Query 001464
Match_columns 1073
No_of_seqs 621 out of 2908
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 01:29:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001464.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001464hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0239 Kinesin (KAR3 subfamil 100.0 3.6E-97 8E-102 888.6 45.0 594 225-851 71-668 (670)
2 KOG4280 Kinesin-like protein [ 100.0 2.3E-84 5E-89 755.8 26.2 353 493-850 4-364 (574)
3 KOG0243 Kinesin-like protein [ 100.0 3.2E-82 6.9E-87 763.4 30.3 356 494-852 49-421 (1041)
4 KOG0245 Kinesin-like protein [ 100.0 3.7E-81 8.1E-86 739.8 25.4 355 494-853 4-379 (1221)
5 PLN03188 kinesin-12 family pro 100.0 7.4E-78 1.6E-82 730.7 38.7 361 482-863 82-467 (1320)
6 cd01370 KISc_KIP3_like Kinesin 100.0 3.6E-77 7.9E-82 674.3 34.9 320 495-823 1-338 (338)
7 cd01373 KISc_KLP2_like Kinesin 100.0 5.4E-76 1.2E-80 664.5 35.9 320 494-823 1-337 (337)
8 KOG0240 Kinesin (SMY1 subfamil 100.0 4.6E-77 9.9E-82 678.0 26.2 327 493-828 6-336 (607)
9 KOG0242 Kinesin-like protein [ 100.0 5.9E-76 1.3E-80 707.9 27.9 351 494-853 6-363 (675)
10 cd01368 KISc_KIF23_like Kinesi 100.0 2E-74 4.4E-79 653.6 35.3 316 494-821 1-345 (345)
11 cd01365 KISc_KIF1A_KIF1B Kines 100.0 2.3E-73 4.9E-78 647.5 37.7 328 494-828 1-354 (356)
12 cd01364 KISc_BimC_Eg5 Kinesin 100.0 1.8E-72 3.9E-77 639.1 37.5 334 494-830 2-350 (352)
13 cd01367 KISc_KIF2_like Kinesin 100.0 9.2E-73 2E-77 634.6 34.3 315 494-821 1-322 (322)
14 cd01371 KISc_KIF3 Kinesin moto 100.0 5.8E-72 1.3E-76 630.8 36.7 326 494-823 1-333 (333)
15 cd01376 KISc_KID_like Kinesin 100.0 4.9E-72 1.1E-76 628.0 35.8 314 495-821 1-319 (319)
16 KOG0241 Kinesin-like protein [ 100.0 4.5E-73 9.8E-78 657.9 27.5 353 494-853 4-382 (1714)
17 cd01366 KISc_C_terminal Kinesi 100.0 1.2E-71 2.6E-76 626.7 38.1 325 493-826 1-329 (329)
18 cd01372 KISc_KIF4 Kinesin moto 100.0 8.2E-72 1.8E-76 631.0 36.3 321 495-824 2-341 (341)
19 cd01369 KISc_KHC_KIF5 Kinesin 100.0 1.4E-71 3E-76 625.5 36.7 320 494-823 2-325 (325)
20 cd01374 KISc_CENP_E Kinesin mo 100.0 1.8E-71 3.8E-76 623.8 35.4 315 495-823 1-321 (321)
21 cd01375 KISc_KIF9_like Kinesin 100.0 9.6E-71 2.1E-75 621.1 35.6 320 495-821 1-334 (334)
22 cd00106 KISc Kinesin motor dom 100.0 1.9E-67 4.1E-72 591.6 38.0 322 495-821 1-328 (328)
23 smart00129 KISc Kinesin motor, 100.0 1E-66 2.3E-71 587.7 37.6 326 495-829 1-334 (335)
24 PF00225 Kinesin: Kinesin moto 100.0 1.4E-67 3.1E-72 594.2 26.7 321 501-823 1-335 (335)
25 KOG0246 Kinesin-like protein [ 100.0 3.9E-63 8.5E-68 561.8 28.9 325 494-826 208-544 (676)
26 KOG0247 Kinesin-like protein [ 100.0 1.3E-63 2.8E-68 579.3 25.5 331 491-827 28-440 (809)
27 KOG0244 Kinesin-like protein [ 100.0 4.8E-63 1.1E-67 589.4 8.7 342 502-854 1-349 (913)
28 COG5059 KIP1 Kinesin-like prot 100.0 1.2E-58 2.6E-63 552.8 29.7 310 538-854 55-369 (568)
29 cd01363 Motor_domain Myosin an 100.0 2.6E-49 5.6E-54 412.3 19.3 176 556-802 8-186 (186)
30 KOG2046 Calponin [Cytoskeleton 99.9 3.9E-24 8.5E-29 220.0 10.8 123 8-135 3-133 (193)
31 COG5199 SCP1 Calponin [Cytoske 99.7 4.2E-18 9.2E-23 167.2 7.2 108 23-135 6-120 (178)
32 cd00014 CH Calponin homology d 99.5 7.9E-15 1.7E-19 138.5 7.4 98 31-131 2-106 (107)
33 KOG2128 Ras GTPase-activating 99.4 2.9E-13 6.4E-18 168.9 7.9 97 31-133 43-148 (1401)
34 COG5261 IQG1 Protein involved 99.4 5.6E-13 1.2E-17 158.9 8.9 102 30-137 44-154 (1054)
35 PF00307 CH: Calponin homology 99.3 2.2E-12 4.7E-17 121.9 5.2 99 32-132 1-108 (108)
36 smart00033 CH Calponin homolog 99.3 3.7E-12 8.1E-17 119.1 5.6 93 32-127 2-103 (103)
37 KOG2996 Rho guanine nucleotide 99.0 2.5E-10 5.4E-15 132.0 7.5 101 31-131 3-119 (865)
38 COG5059 KIP1 Kinesin-like prot 99.0 1.6E-12 3.4E-17 157.2 -11.9 271 479-767 291-566 (568)
39 KOG0532 Leucine-rich repeat (L 99.0 5.8E-10 1.3E-14 130.4 5.7 100 30-131 572-686 (722)
40 KOG0046 Ca2+-binding actin-bun 97.8 1.6E-05 3.4E-10 92.9 4.0 109 8-116 97-220 (627)
41 PF11971 CAMSAP_CH: CAMSAP CH 97.3 0.00029 6.2E-09 65.6 4.6 65 48-112 7-81 (85)
42 PHA02562 46 endonuclease subun 97.0 0.57 1.2E-05 57.3 30.9 164 307-471 213-394 (562)
43 PF00038 Filament: Intermediat 96.9 0.74 1.6E-05 52.2 28.1 48 329-376 97-151 (312)
44 TIGR02169 SMC_prok_A chromosom 96.8 0.68 1.5E-05 61.2 30.5 12 670-681 625-636 (1164)
45 KOG2129 Uncharacterized conser 96.7 0.13 2.9E-06 59.5 19.9 36 312-347 134-170 (552)
46 PF09726 Macoilin: Transmembra 96.7 0.46 9.9E-06 60.0 26.6 32 269-300 422-453 (697)
47 KOG0161 Myosin class II heavy 96.7 0.69 1.5E-05 63.6 29.4 9 32-40 578-586 (1930)
48 PF07888 CALCOCO1: Calcium bin 96.7 1.6 3.4E-05 53.4 29.4 34 309-342 201-234 (546)
49 KOG0977 Nuclear envelope prote 96.6 0.56 1.2E-05 57.1 25.4 132 259-397 97-261 (546)
50 TIGR02169 SMC_prok_A chromosom 96.6 1.1 2.4E-05 59.2 30.5 13 813-825 1139-1151(1164)
51 PF07888 CALCOCO1: Calcium bin 96.5 1.7 3.8E-05 53.0 28.4 22 346-367 280-301 (546)
52 COG1196 Smc Chromosome segrega 96.5 1.5 3.3E-05 58.7 30.5 63 754-827 1072-1145(1163)
53 PF12128 DUF3584: Protein of u 96.4 1.2 2.7E-05 59.8 29.2 12 755-766 1126-1137(1201)
54 KOG4673 Transcription factor T 96.4 1.4 3E-05 54.2 26.0 56 291-346 479-534 (961)
55 PF09726 Macoilin: Transmembra 96.3 0.46 9.9E-06 60.0 23.2 27 378-404 545-571 (697)
56 TIGR02168 SMC_prok_B chromosom 96.3 2 4.3E-05 56.7 30.4 12 814-825 1155-1166(1179)
57 KOG0250 DNA repair protein RAD 96.3 1.5 3.2E-05 56.8 27.2 31 334-364 322-352 (1074)
58 TIGR00606 rad50 rad50. This fa 96.2 1.4 3E-05 59.8 28.8 44 413-456 884-927 (1311)
59 COG1196 Smc Chromosome segrega 96.2 1.6 3.4E-05 58.6 28.7 10 599-608 588-597 (1163)
60 KOG0995 Centromere-associated 96.1 5 0.00011 49.0 29.4 90 31-133 71-173 (581)
61 PRK11637 AmiB activator; Provi 96.1 3.3 7.2E-05 49.5 28.3 13 700-712 405-417 (428)
62 PRK11637 AmiB activator; Provi 96.1 2.1 4.5E-05 51.2 26.4 21 568-592 356-377 (428)
63 PRK02224 chromosome segregatio 96.1 3.6 7.9E-05 53.3 30.3 14 31-44 110-123 (880)
64 PF15397 DUF4618: Domain of un 96.0 3 6.4E-05 46.7 25.0 94 287-394 46-147 (258)
65 PF05667 DUF812: Protein of un 96.0 4.3 9.2E-05 50.7 29.0 30 271-300 327-356 (594)
66 KOG1029 Endocytic adaptor prot 96.0 1.6 3.5E-05 54.3 24.5 11 260-270 333-343 (1118)
67 KOG0161 Myosin class II heavy 96.0 3 6.4E-05 57.8 29.3 79 325-404 1066-1144(1930)
68 KOG0996 Structural maintenance 95.9 2.5 5.5E-05 55.0 26.7 42 92-134 91-138 (1293)
69 PF10498 IFT57: Intra-flagella 95.9 1 2.2E-05 52.7 21.9 44 91-134 72-116 (359)
70 PF15397 DUF4618: Domain of un 95.8 4.1 9E-05 45.6 25.0 117 258-394 49-165 (258)
71 TIGR00606 rad50 rad50. This fa 95.7 3.4 7.3E-05 56.2 28.8 28 379-406 882-909 (1311)
72 KOG0971 Microtubule-associated 95.7 6.1 0.00013 50.3 27.8 43 56-100 30-72 (1243)
73 PRK03918 chromosome segregatio 95.6 9.7 0.00021 49.4 31.4 10 231-240 146-155 (880)
74 PF12128 DUF3584: Protein of u 95.6 1.5 3.3E-05 59.0 24.5 127 334-463 634-768 (1201)
75 PF05010 TACC: Transforming ac 95.6 2.7 5.8E-05 45.8 21.9 84 315-398 70-156 (207)
76 COG1340 Uncharacterized archae 95.6 5.8 0.00013 45.2 26.1 24 308-331 63-86 (294)
77 PF09755 DUF2046: Uncharacteri 95.5 2.8 6.1E-05 47.9 22.6 146 311-459 110-257 (310)
78 KOG0977 Nuclear envelope prote 95.5 5.4 0.00012 48.9 26.3 17 627-643 439-455 (546)
79 KOG0996 Structural maintenance 95.5 6.8 0.00015 51.3 28.0 35 258-292 292-326 (1293)
80 PRK02224 chromosome segregatio 95.4 7.9 0.00017 50.3 29.8 15 195-209 128-142 (880)
81 KOG0976 Rho/Rac1-interacting s 95.4 8.1 0.00018 48.6 27.1 17 805-821 906-922 (1265)
82 PHA02562 46 endonuclease subun 95.3 7.8 0.00017 47.5 27.6 17 601-617 509-525 (562)
83 KOG4643 Uncharacterized coiled 95.2 1.8 3.9E-05 55.4 21.5 109 294-407 185-293 (1195)
84 KOG0933 Structural maintenance 95.2 8 0.00017 49.9 26.8 34 288-321 253-286 (1174)
85 PF06395 CDC24: CDC24 Calponin 95.2 0.048 1E-06 51.4 6.2 73 55-127 4-88 (89)
86 PF15070 GOLGA2L5: Putative go 95.0 11 0.00024 47.3 27.7 16 473-488 244-259 (617)
87 KOG0250 DNA repair protein RAD 95.0 11 0.00024 49.3 27.8 17 668-684 599-615 (1074)
88 KOG0243 Kinesin-like protein [ 94.8 6.6 0.00014 51.2 25.3 30 229-264 320-352 (1041)
89 PF05667 DUF812: Protein of un 94.8 5.2 0.00011 49.9 24.0 25 471-495 503-527 (594)
90 KOG0964 Structural maintenance 94.8 9.2 0.0002 49.3 25.7 18 258-275 188-205 (1200)
91 KOG0612 Rho-associated, coiled 94.8 9.1 0.0002 50.4 26.2 17 55-71 217-236 (1317)
92 PRK04863 mukB cell division pr 94.7 6.9 0.00015 53.7 26.7 51 445-495 438-488 (1486)
93 KOG0994 Extracellular matrix g 94.7 20 0.00042 47.2 28.2 17 483-499 1738-1754(1758)
94 KOG0971 Microtubule-associated 94.7 6.3 0.00014 50.2 23.8 32 333-364 394-425 (1243)
95 KOG4674 Uncharacterized conser 94.7 4.7 0.0001 55.2 24.5 82 316-401 740-821 (1822)
96 COG1579 Zn-ribbon protein, pos 94.6 2.2 4.8E-05 47.2 18.2 94 307-406 52-145 (239)
97 KOG1937 Uncharacterized conser 94.5 6 0.00013 47.0 21.9 78 325-402 283-362 (521)
98 PRK01156 chromosome segregatio 94.3 22 0.00047 46.5 29.4 24 481-505 434-457 (895)
99 PF08317 Spc7: Spc7 kinetochor 94.2 10 0.00022 43.9 23.4 27 287-313 136-162 (325)
100 PRK03918 chromosome segregatio 94.1 11 0.00025 48.8 26.2 11 34-44 112-122 (880)
101 KOG0963 Transcription factor/C 94.0 21 0.00046 44.2 26.9 161 319-489 187-349 (629)
102 PF05911 DUF869: Plant protein 94.0 2.5 5.3E-05 54.0 19.1 96 311-407 593-688 (769)
103 KOG4807 F-actin binding protei 94.0 9.2 0.0002 44.6 21.6 104 347-452 419-540 (593)
104 PF10174 Cast: RIM-binding pro 94.0 8.6 0.00019 49.4 23.8 60 432-498 665-724 (775)
105 PF15070 GOLGA2L5: Putative go 93.9 24 0.00051 44.5 28.7 50 349-399 87-136 (617)
106 PRK04778 septation ring format 93.8 10 0.00022 47.2 23.9 57 310-366 285-341 (569)
107 PF12325 TMF_TATA_bd: TATA ele 93.8 1.3 2.7E-05 44.3 12.9 61 315-375 31-94 (120)
108 KOG0995 Centromere-associated 93.7 23 0.00049 43.7 29.0 10 119-128 129-138 (581)
109 KOG1029 Endocytic adaptor prot 93.7 23 0.0005 44.8 25.5 14 456-469 563-576 (1118)
110 PF15035 Rootletin: Ciliary ro 93.6 7.2 0.00016 41.7 19.2 53 409-461 119-171 (182)
111 PRK09039 hypothetical protein; 93.6 5.5 0.00012 46.5 20.0 13 232-244 36-48 (343)
112 PF00038 Filament: Intermediat 93.6 16 0.00034 41.5 30.9 31 270-300 73-103 (312)
113 PF10473 CENP-F_leu_zip: Leuci 93.5 6.6 0.00014 40.3 17.7 65 338-410 41-105 (140)
114 PF05483 SCP-1: Synaptonemal c 93.5 27 0.00059 43.8 28.1 69 334-402 526-604 (786)
115 KOG4674 Uncharacterized conser 93.5 29 0.00062 48.2 28.1 46 434-479 1028-1073(1822)
116 PF07926 TPR_MLP1_2: TPR/MLP1/ 93.4 7.4 0.00016 39.2 18.0 56 434-492 76-131 (132)
117 smart00787 Spc7 Spc7 kinetocho 93.4 13 0.00027 43.0 22.1 28 286-313 130-157 (312)
118 PRK04778 septation ring format 93.3 12 0.00027 46.4 23.4 18 27-44 26-43 (569)
119 KOG0964 Structural maintenance 93.0 18 0.0004 46.8 23.8 66 433-498 330-408 (1200)
120 PF10481 CENP-F_N: Cenp-F N-te 93.0 3.9 8.5E-05 45.7 16.3 26 468-493 164-189 (307)
121 PF05622 HOOK: HOOK protein; 93.0 0.13 2.8E-06 65.2 5.8 43 30-79 7-49 (713)
122 PF06818 Fez1: Fez1; InterPro 93.0 7.5 0.00016 42.1 18.0 97 246-361 7-106 (202)
123 PRK04863 mukB cell division pr 92.9 53 0.0012 45.5 30.2 21 836-856 1212-1232(1486)
124 KOG4643 Uncharacterized coiled 92.9 40 0.00086 44.0 28.5 13 481-493 545-557 (1195)
125 PF15619 Lebercilin: Ciliary p 92.9 16 0.00035 39.4 23.9 97 347-461 66-162 (194)
126 PF14662 CCDC155: Coiled-coil 92.8 14 0.0003 39.7 19.5 93 263-366 34-126 (193)
127 KOG0612 Rho-associated, coiled 92.7 14 0.00029 48.9 22.5 27 378-404 667-693 (1317)
128 PF00308 Bac_DnaA: Bacterial d 92.6 0.043 9.4E-07 59.5 0.8 50 540-591 4-53 (219)
129 COG4372 Uncharacterized protei 92.6 26 0.00057 41.2 27.6 27 564-593 384-411 (499)
130 COG1579 Zn-ribbon protein, pos 92.4 21 0.00046 39.7 21.0 35 304-338 28-62 (239)
131 KOG0980 Actin-binding protein 92.1 31 0.00067 44.4 24.0 22 306-327 385-406 (980)
132 PF13851 GAS: Growth-arrest sp 92.1 16 0.00035 39.5 19.5 11 308-318 56-66 (201)
133 PF05701 WEMBL: Weak chloropla 92.1 38 0.00082 41.9 28.9 21 344-364 174-194 (522)
134 COG0556 UvrB Helicase subunit 92.1 0.29 6.2E-06 59.0 6.6 94 540-638 4-101 (663)
135 PF10174 Cast: RIM-binding pro 91.9 43 0.00094 43.3 25.7 22 484-505 532-553 (775)
136 PF12718 Tropomyosin_1: Tropom 91.9 10 0.00022 39.0 16.8 20 383-402 78-97 (143)
137 KOG0933 Structural maintenance 91.6 55 0.0012 42.9 27.9 20 56-75 480-499 (1174)
138 KOG0999 Microtubule-associated 91.6 24 0.00053 43.0 21.4 31 837-867 600-631 (772)
139 TIGR01005 eps_transp_fam exopo 91.6 32 0.00069 44.2 24.7 28 271-298 200-227 (754)
140 COG5185 HEC1 Protein involved 91.4 40 0.00086 40.7 24.5 28 256-283 255-282 (622)
141 PRK01156 chromosome segregatio 91.4 59 0.0013 42.6 30.2 21 339-359 222-242 (895)
142 COG4372 Uncharacterized protei 91.3 36 0.00079 40.1 22.5 31 463-493 259-289 (499)
143 COG5185 HEC1 Protein involved 91.0 43 0.00094 40.4 25.0 22 53-74 101-122 (622)
144 PF14988 DUF4515: Domain of un 91.0 27 0.00059 38.0 21.2 18 380-397 80-97 (206)
145 PLN03188 kinesin-12 family pro 90.8 20 0.00043 47.8 21.3 76 293-368 877-959 (1320)
146 KOG1850 Myosin-like coiled-coi 90.7 37 0.00079 39.1 22.7 115 352-499 218-332 (391)
147 PF00261 Tropomyosin: Tropomyo 90.4 32 0.0007 38.0 26.2 27 382-408 138-164 (237)
148 TIGR01843 type_I_hlyD type I s 90.2 11 0.00024 44.0 17.6 20 431-450 253-272 (423)
149 COG3883 Uncharacterized protei 90.1 26 0.00057 39.5 19.1 67 308-374 46-112 (265)
150 PRK06893 DNA replication initi 90.0 0.17 3.7E-06 55.1 2.1 48 539-591 11-58 (229)
151 KOG4593 Mitotic checkpoint pro 89.9 65 0.0014 40.7 32.0 65 425-489 245-315 (716)
152 KOG0979 Structural maintenance 89.9 78 0.0017 41.6 24.9 17 967-983 946-962 (1072)
153 PRK14086 dnaA chromosomal repl 89.8 0.16 3.5E-06 62.8 1.9 51 539-591 283-333 (617)
154 PRK06620 hypothetical protein; 89.5 0.13 2.8E-06 55.8 0.7 50 539-591 11-63 (214)
155 KOG1899 LAR transmembrane tyro 89.4 21 0.00046 44.1 18.6 57 262-318 108-164 (861)
156 COG4942 Membrane-bound metallo 89.3 57 0.0012 39.2 22.7 50 308-357 60-109 (420)
157 PF06785 UPF0242: Uncharacteri 89.0 9.2 0.0002 43.9 14.5 68 259-328 87-162 (401)
158 KOG0980 Actin-binding protein 88.7 87 0.0019 40.6 28.7 9 758-766 795-803 (980)
159 PRK10361 DNA recombination pro 88.6 65 0.0014 39.4 22.2 41 433-473 142-182 (475)
160 PRK12377 putative replication 88.6 0.25 5.5E-06 54.8 2.2 50 541-591 71-120 (248)
161 KOG0946 ER-Golgi vesicle-tethe 88.6 77 0.0017 40.7 23.0 18 346-363 696-713 (970)
162 PF09730 BicD: Microtubule-ass 88.5 38 0.00082 43.3 20.9 26 837-862 585-610 (717)
163 PF10168 Nup88: Nuclear pore c 88.2 16 0.00034 46.8 17.7 7 107-113 342-348 (717)
164 cd07651 F-BAR_PombeCdc15_like 88.2 34 0.00074 37.6 18.4 40 328-374 100-139 (236)
165 COG2805 PilT Tfp pilus assembl 88.1 0.23 5.1E-06 56.3 1.5 31 561-591 114-144 (353)
166 TIGR03007 pepcterm_ChnLen poly 87.8 74 0.0016 38.7 23.7 17 231-247 135-151 (498)
167 PRK08084 DNA replication initi 87.7 0.28 6.1E-06 53.7 1.8 47 540-591 18-64 (235)
168 KOG0240 Kinesin (SMY1 subfamil 87.6 83 0.0018 39.0 22.3 39 250-288 330-368 (607)
169 PRK07952 DNA replication prote 87.5 0.32 7E-06 53.9 2.2 50 541-591 69-118 (244)
170 PF05701 WEMBL: Weak chloropla 87.5 83 0.0018 39.0 28.5 32 420-451 277-308 (522)
171 PF09744 Jnk-SapK_ap_N: JNK_SA 87.5 19 0.00042 37.7 14.9 13 254-266 23-35 (158)
172 KOG0976 Rho/Rac1-interacting s 87.4 98 0.0021 39.7 28.2 14 256-269 87-100 (1265)
173 PRK08116 hypothetical protein; 87.1 0.35 7.5E-06 54.3 2.1 51 540-591 81-133 (268)
174 COG2804 PulE Type II secretory 87.0 0.27 5.8E-06 59.2 1.2 32 560-591 246-277 (500)
175 PRK14088 dnaA chromosomal repl 86.8 0.28 6E-06 58.8 1.3 50 539-591 100-149 (440)
176 PF09789 DUF2353: Uncharacteri 86.7 31 0.00068 40.0 17.3 48 445-492 157-208 (319)
177 PRK06835 DNA replication prote 86.6 0.28 6.1E-06 56.7 1.1 38 553-591 165-202 (329)
178 TIGR01843 type_I_hlyD type I s 86.5 27 0.0006 40.8 17.6 7 569-575 326-332 (423)
179 PF12718 Tropomyosin_1: Tropom 86.5 42 0.00091 34.5 18.2 39 319-357 5-43 (143)
180 PRK05642 DNA replication initi 86.4 0.41 8.8E-06 52.5 2.1 49 540-591 15-64 (234)
181 TIGR02680 conserved hypothetic 86.3 1.6E+02 0.0034 40.9 27.3 10 773-782 839-848 (1353)
182 PF06160 EzrA: Septation ring 86.2 56 0.0012 40.7 20.7 62 332-398 303-364 (560)
183 PRK10865 protein disaggregatio 86.1 23 0.0005 46.3 18.0 44 543-590 567-616 (857)
184 KOG3000 Microtubule-binding pr 86.1 1.6 3.5E-05 49.6 6.7 103 29-139 14-123 (295)
185 PF10473 CENP-F_leu_zip: Leuci 86.1 39 0.00084 34.8 15.9 20 386-405 95-114 (140)
186 PRK09039 hypothetical protein; 86.0 78 0.0017 37.1 21.5 18 254-271 39-56 (343)
187 PF09730 BicD: Microtubule-ass 86.0 85 0.0018 40.3 22.0 24 839-862 672-695 (717)
188 TIGR00362 DnaA chromosomal rep 85.9 0.36 7.7E-06 57.0 1.5 52 538-591 104-155 (405)
189 PF09787 Golgin_A5: Golgin sub 85.9 98 0.0021 38.2 26.1 47 350-396 275-324 (511)
190 PF15254 CCDC14: Coiled-coil d 85.8 78 0.0017 40.5 20.9 54 417-470 455-508 (861)
191 COG3883 Uncharacterized protei 85.6 70 0.0015 36.3 23.0 47 314-360 38-84 (265)
192 PF08317 Spc7: Spc7 kinetochor 85.6 78 0.0017 36.7 28.5 36 226-271 50-85 (325)
193 PF15619 Lebercilin: Ciliary p 85.6 58 0.0013 35.2 21.2 31 380-410 120-150 (194)
194 KOG1103 Predicted coiled-coil 85.4 76 0.0017 36.9 19.1 27 353-379 171-197 (561)
195 PRK00149 dnaA chromosomal repl 85.4 0.38 8.3E-06 57.6 1.5 52 538-591 116-167 (450)
196 PRK12704 phosphodiesterase; Pr 85.2 1.1E+02 0.0023 38.1 22.8 11 552-562 283-293 (520)
197 cd07647 F-BAR_PSTPIP The F-BAR 85.2 40 0.00087 37.2 17.0 27 348-374 112-138 (239)
198 PF13851 GAS: Growth-arrest sp 85.2 61 0.0013 35.2 25.6 27 382-408 97-123 (201)
199 PF04849 HAP1_N: HAP1 N-termin 85.1 70 0.0015 37.0 18.9 52 306-360 173-224 (306)
200 COG1340 Uncharacterized archae 85.0 80 0.0017 36.3 22.8 21 382-402 135-155 (294)
201 PF09731 Mitofilin: Mitochondr 84.9 1.1E+02 0.0024 38.0 22.8 17 598-614 491-507 (582)
202 COG4477 EzrA Negative regulato 84.9 73 0.0016 39.2 19.6 52 345-401 319-370 (570)
203 KOG4809 Rab6 GTPase-interactin 84.4 1.1E+02 0.0025 37.7 28.0 29 256-284 245-273 (654)
204 PRK09087 hypothetical protein; 84.4 0.57 1.2E-05 51.2 2.1 48 539-591 16-63 (226)
205 PF10168 Nup88: Nuclear pore c 84.3 25 0.00053 45.1 16.6 27 339-365 569-595 (717)
206 TIGR03185 DNA_S_dndD DNA sulfu 84.3 79 0.0017 40.1 21.1 19 256-274 318-336 (650)
207 KOG0804 Cytoplasmic Zn-finger 84.1 42 0.00092 40.3 16.9 9 91-99 87-95 (493)
208 PF06548 Kinesin-related: Kine 84.1 1.1E+02 0.0023 37.1 20.3 22 473-494 448-469 (488)
209 PF04949 Transcrip_act: Transc 84.0 36 0.00078 35.2 14.3 70 228-320 28-97 (159)
210 PF12325 TMF_TATA_bd: TATA ele 84.0 26 0.00057 35.1 13.3 26 435-460 93-118 (120)
211 KOG4673 Transcription factor T 83.9 1.3E+02 0.0029 38.0 26.7 32 329-360 410-441 (961)
212 COG1484 DnaC DNA replication p 83.2 0.75 1.6E-05 51.2 2.5 49 541-591 76-124 (254)
213 TIGR03420 DnaA_homol_Hda DnaA 83.1 0.76 1.6E-05 49.1 2.4 47 540-591 11-57 (226)
214 KOG0046 Ca2+-binding actin-bun 83.0 3.8 8.3E-05 49.5 8.1 42 32-79 390-431 (627)
215 TIGR01242 26Sp45 26S proteasom 82.7 3 6.4E-05 48.7 7.2 19 572-590 156-174 (364)
216 PRK08903 DnaA regulatory inact 82.6 0.81 1.8E-05 49.3 2.4 49 539-591 13-61 (227)
217 PF13870 DUF4201: Domain of un 82.5 69 0.0015 33.7 20.5 89 272-366 6-94 (177)
218 PRK03992 proteasome-activating 82.4 17 0.00036 43.1 13.3 18 572-589 165-182 (389)
219 PF00261 Tropomyosin: Tropomyo 81.5 91 0.002 34.5 24.4 10 483-492 225-234 (237)
220 PF10212 TTKRSYEDQ: Predicted 81.5 1.1E+02 0.0024 37.7 19.5 46 432-477 463-508 (518)
221 PLN02939 transferase, transfer 81.5 1.1E+02 0.0023 40.8 20.6 17 289-305 166-182 (977)
222 PRK14087 dnaA chromosomal repl 81.4 0.67 1.5E-05 55.8 1.3 50 540-591 111-160 (450)
223 TIGR02928 orc1/cdc6 family rep 81.3 0.92 2E-05 52.2 2.3 39 552-590 19-58 (365)
224 KOG1937 Uncharacterized conser 81.2 1.4E+02 0.003 36.2 27.3 104 297-401 284-405 (521)
225 PF06548 Kinesin-related: Kine 81.2 1.4E+02 0.003 36.3 20.3 28 297-324 116-143 (488)
226 KOG0804 Cytoplasmic Zn-finger 81.1 31 0.00068 41.3 14.4 16 378-393 428-443 (493)
227 COG0593 DnaA ATPase involved i 80.9 0.71 1.5E-05 54.7 1.3 51 539-591 82-132 (408)
228 COG4942 Membrane-bound metallo 80.6 1.4E+02 0.003 36.0 26.0 26 424-449 217-242 (420)
229 KOG0982 Centrosomal protein Nu 80.5 1.4E+02 0.003 35.9 20.2 13 428-440 346-358 (502)
230 TIGR03319 YmdA_YtgF conserved 80.4 1.6E+02 0.0035 36.5 23.0 7 554-560 279-285 (514)
231 PRK06526 transposase; Provisio 80.4 0.64 1.4E-05 51.8 0.6 40 547-591 77-117 (254)
232 PTZ00454 26S protease regulato 80.3 5.1 0.00011 47.7 8.1 51 540-590 141-197 (398)
233 KOG0962 DNA repair protein RAD 80.3 2.4E+02 0.0052 38.5 27.8 15 601-615 1127-1141(1294)
234 PF04849 HAP1_N: HAP1 N-termin 80.2 62 0.0013 37.4 16.1 25 381-405 163-187 (306)
235 TIGR03185 DNA_S_dndD DNA sulfu 79.6 1.4E+02 0.003 37.9 20.9 22 724-745 536-557 (650)
236 PRK08181 transposase; Validate 79.5 1 2.2E-05 50.7 1.9 21 569-591 105-125 (269)
237 PF04111 APG6: Autophagy prote 79.2 20 0.00044 41.4 12.3 37 326-362 55-91 (314)
238 KOG0249 LAR-interacting protei 79.1 87 0.0019 39.7 17.7 70 327-402 118-187 (916)
239 COG2433 Uncharacterized conser 78.8 23 0.00049 44.0 12.7 24 55-78 57-80 (652)
240 PRK08727 hypothetical protein; 78.7 1.1 2.5E-05 48.9 1.9 45 540-591 15-60 (233)
241 COG2433 Uncharacterized conser 78.7 21 0.00045 44.3 12.4 21 384-404 480-500 (652)
242 PRK08939 primosomal protein Dn 78.7 0.85 1.8E-05 52.2 1.0 51 541-591 124-175 (306)
243 PF04851 ResIII: Type III rest 78.7 0.88 1.9E-05 46.1 1.0 29 563-591 15-44 (184)
244 PF05483 SCP-1: Synaptonemal c 78.3 2E+02 0.0044 36.5 26.9 74 226-299 150-239 (786)
245 PF08581 Tup_N: Tup N-terminal 77.9 38 0.00083 31.6 11.2 46 420-465 28-73 (79)
246 TIGR02903 spore_lon_C ATP-depe 77.8 10 0.00022 47.7 9.9 28 563-590 166-193 (615)
247 KOG4403 Cell surface glycoprot 77.7 1.5E+02 0.0033 35.6 18.3 18 231-248 222-239 (575)
248 PF07798 DUF1640: Protein of u 77.3 1E+02 0.0022 32.6 18.8 15 231-245 23-37 (177)
249 cd07672 F-BAR_PSTPIP2 The F-BA 77.2 1.3E+02 0.0028 33.6 18.8 37 331-374 103-139 (240)
250 KOG1853 LIS1-interacting prote 77.0 1.3E+02 0.0029 33.7 19.2 67 337-407 54-120 (333)
251 cd07671 F-BAR_PSTPIP1 The F-BA 77.0 1.3E+02 0.0028 33.6 20.9 39 329-374 100-138 (242)
252 PF10212 TTKRSYEDQ: Predicted 76.9 32 0.0007 42.1 13.3 26 347-372 467-492 (518)
253 KOG3631 Alpha-parvin and relat 76.5 4.3 9.3E-05 45.3 5.4 97 31-132 91-196 (365)
254 PF09731 Mitofilin: Mitochondr 76.5 2.1E+02 0.0045 35.7 21.5 31 465-495 407-442 (582)
255 TIGR02680 conserved hypothetic 76.4 3.3E+02 0.0071 37.9 26.6 11 262-272 743-753 (1353)
256 PRK00411 cdc6 cell division co 76.4 1.7 3.8E-05 50.6 2.7 37 554-590 36-73 (394)
257 COG1474 CDC6 Cdc6-related prot 76.3 1.5 3.3E-05 51.4 2.2 30 560-589 29-59 (366)
258 PF15290 Syntaphilin: Golgi-lo 76.3 65 0.0014 36.6 14.4 59 346-413 86-145 (305)
259 COG5069 SAC6 Ca2+-binding acti 76.3 2.2 4.8E-05 50.8 3.4 79 32-112 127-215 (612)
260 PF01576 Myosin_tail_1: Myosin 76.2 0.84 1.8E-05 59.2 0.0 58 348-405 291-348 (859)
261 PRK10884 SH3 domain-containing 76.1 25 0.00053 38.4 11.0 21 383-403 137-157 (206)
262 PLN02939 transferase, transfer 75.8 1.4E+02 0.0029 39.8 19.1 52 292-344 149-210 (977)
263 KOG0978 E3 ubiquitin ligase in 75.7 2.4E+02 0.0053 36.2 31.1 20 561-580 671-690 (698)
264 PF06160 EzrA: Septation ring 75.6 2.2E+02 0.0048 35.6 28.2 21 434-454 316-336 (560)
265 PF07926 TPR_MLP1_2: TPR/MLP1/ 75.5 95 0.0021 31.3 17.4 16 387-402 61-76 (132)
266 cd00046 DEXDc DEAD-like helica 75.4 0.96 2.1E-05 42.7 0.1 17 575-591 3-19 (144)
267 PRK12704 phosphodiesterase; Pr 75.4 1.2E+02 0.0026 37.7 18.0 13 482-494 191-203 (520)
268 PF15066 CAGE1: Cancer-associa 75.3 87 0.0019 37.9 15.8 156 243-402 342-527 (527)
269 PF07058 Myosin_HC-like: Myosi 74.8 51 0.0011 37.8 13.2 65 275-339 3-84 (351)
270 PF10186 Atg14: UV radiation r 74.8 1.5E+02 0.0032 33.1 18.7 10 482-491 146-155 (302)
271 cd00009 AAA The AAA+ (ATPases 74.2 1.7 3.6E-05 41.5 1.5 20 571-590 18-37 (151)
272 PRK06921 hypothetical protein; 74.1 1.8 4E-05 48.5 2.0 38 554-591 96-136 (266)
273 TIGR03017 EpsF chain length de 74.1 2E+02 0.0043 34.4 26.0 29 270-298 176-204 (444)
274 PRK10436 hypothetical protein; 73.3 1.4 3E-05 53.3 0.9 29 563-591 209-237 (462)
275 TIGR03319 YmdA_YtgF conserved 73.1 1.5E+02 0.0032 36.9 17.9 13 482-494 185-197 (514)
276 PRK00106 hypothetical protein; 72.8 2.6E+02 0.0055 35.0 23.0 6 554-559 300-305 (535)
277 PF13401 AAA_22: AAA domain; P 72.7 1 2.2E-05 43.6 -0.4 19 572-590 4-22 (131)
278 TIGR02538 type_IV_pilB type IV 72.5 1.5 3.3E-05 54.3 0.9 30 562-591 306-335 (564)
279 TIGR02533 type_II_gspE general 72.1 1.7 3.8E-05 52.8 1.3 30 562-591 232-261 (486)
280 KOG0963 Transcription factor/C 71.9 2.8E+02 0.006 35.0 27.7 62 433-494 287-351 (629)
281 KOG0979 Structural maintenance 71.8 3.4E+02 0.0074 36.1 26.1 6 74-79 17-22 (1072)
282 PRK12422 chromosomal replicati 71.7 2.1 4.6E-05 51.5 1.9 52 538-591 105-160 (445)
283 PF06008 Laminin_I: Laminin Do 71.5 1.8E+02 0.0038 32.6 21.9 18 252-269 19-36 (264)
284 PF00270 DEAD: DEAD/DEAH box h 71.3 1.9 4.1E-05 43.4 1.2 27 563-591 7-33 (169)
285 PF05911 DUF869: Plant protein 71.1 3.3E+02 0.0071 35.6 24.9 50 326-375 125-174 (769)
286 PF04012 PspA_IM30: PspA/IM30 70.9 1.6E+02 0.0035 31.9 19.1 34 232-270 6-39 (221)
287 PF15294 Leu_zip: Leucine zipp 70.9 81 0.0018 36.0 13.8 151 274-441 127-277 (278)
288 PF07798 DUF1640: Protein of u 70.9 1.5E+02 0.0032 31.4 17.3 17 433-449 140-156 (177)
289 PF13245 AAA_19: Part of AAA d 70.9 1.7 3.7E-05 39.6 0.7 27 564-591 3-29 (76)
290 PF11802 CENP-K: Centromere-as 70.8 2E+02 0.0042 32.8 18.8 43 287-330 31-75 (268)
291 KOG0517 Beta-spectrin [Cytoske 70.7 4.7E+02 0.01 37.2 33.3 85 17-105 30-122 (2473)
292 PLN03229 acetyl-coenzyme A car 70.6 3.2E+02 0.007 35.3 24.6 71 219-289 421-494 (762)
293 smart00382 AAA ATPases associa 70.5 1.4 3E-05 41.4 -0.0 19 573-591 3-21 (148)
294 PTZ00112 origin recognition co 70.4 1.5 3.2E-05 56.4 0.2 33 558-590 765-799 (1164)
295 KOG0999 Microtubule-associated 70.3 2.8E+02 0.0061 34.5 24.0 21 273-293 58-78 (772)
296 PF12846 AAA_10: AAA-like doma 70.3 1.4 3.1E-05 48.4 -0.0 19 572-590 1-19 (304)
297 PF01935 DUF87: Domain of unkn 70.3 1.5 3.2E-05 47.3 0.1 17 574-590 25-41 (229)
298 PRK12402 replication factor C 69.8 1.9 4.1E-05 48.9 0.9 44 541-591 12-55 (337)
299 TIGR01420 pilT_fam pilus retra 69.8 2 4.3E-05 49.9 1.1 29 563-591 113-141 (343)
300 cd01131 PilT Pilus retraction 69.3 1.5 3.4E-05 46.7 0.0 19 572-590 1-19 (198)
301 PF05557 MAD: Mitotic checkpoi 68.7 75 0.0016 40.8 14.8 21 385-405 566-586 (722)
302 KOG4593 Mitotic checkpoint pro 68.6 3.4E+02 0.0074 34.7 26.7 17 226-242 57-73 (716)
303 PF12004 DUF3498: Domain of un 68.3 1.7 3.6E-05 52.8 0.0 58 342-403 369-426 (495)
304 PF06294 DUF1042: Domain of Un 68.3 4.1 8.8E-05 42.5 2.8 86 35-128 1-99 (158)
305 cd07658 F-BAR_NOSTRIN The F-BA 68.1 2E+02 0.0044 31.9 18.0 38 330-374 104-141 (239)
306 TIGR02525 plasmid_TraJ plasmid 67.8 2.3 5.1E-05 50.0 1.1 28 563-591 141-168 (372)
307 TIGR02524 dot_icm_DotB Dot/Icm 66.7 2.6 5.6E-05 49.4 1.1 21 571-591 133-153 (358)
308 PF14988 DUF4515: Domain of un 66.7 2E+02 0.0044 31.4 23.5 48 345-392 81-128 (206)
309 PF09728 Taxilin: Myosin-like 66.2 2.6E+02 0.0056 32.5 23.6 121 288-416 148-268 (309)
310 KOG0018 Structural maintenance 66.2 4.5E+02 0.0098 35.3 27.1 30 93-122 39-75 (1141)
311 KOG0018 Structural maintenance 66.2 4.5E+02 0.0098 35.3 24.5 29 261-289 269-297 (1141)
312 PF15272 BBP1_C: Spindle pole 65.9 2.1E+02 0.0045 31.3 15.0 120 261-394 9-148 (196)
313 PF00437 T2SE: Type II/IV secr 65.9 2.2 4.9E-05 47.2 0.4 29 561-590 117-145 (270)
314 cd01129 PulE-GspE PulE/GspE Th 65.7 2.9 6.3E-05 46.8 1.3 30 562-591 70-99 (264)
315 PF04111 APG6: Autophagy prote 65.6 63 0.0014 37.4 12.0 53 307-359 43-95 (314)
316 TIGR03015 pepcterm_ATPase puta 65.5 3.6 7.9E-05 45.1 2.0 25 566-590 37-61 (269)
317 KOG2129 Uncharacterized conser 65.4 3.1E+02 0.0066 33.1 25.1 33 433-465 255-287 (552)
318 PF12252 SidE: Dot/Icm substra 65.3 4.7E+02 0.01 35.2 20.9 39 325-363 1135-1174(1439)
319 PF09789 DUF2353: Uncharacteri 65.0 2.8E+02 0.006 32.5 20.3 39 302-340 74-112 (319)
320 PF15290 Syntaphilin: Golgi-lo 65.0 1.6E+02 0.0034 33.7 14.2 20 432-451 118-137 (305)
321 PF15233 SYCE1: Synaptonemal c 65.0 1.4E+02 0.0031 30.4 12.5 20 340-359 39-58 (134)
322 TIGR01000 bacteriocin_acc bact 64.5 2.6E+02 0.0055 33.9 17.5 17 563-579 368-384 (457)
323 PF05673 DUF815: Protein of un 64.2 2.8 6E-05 46.7 0.8 130 541-706 24-155 (249)
324 PF13604 AAA_30: AAA domain; P 64.2 3 6.5E-05 44.5 1.0 29 562-590 8-36 (196)
325 PRK11281 hypothetical protein; 64.1 5.2E+02 0.011 35.3 22.1 13 561-573 413-425 (1113)
326 TIGR03346 chaperone_ClpB ATP-d 63.8 3.2E+02 0.0069 36.1 19.2 38 553-590 570-613 (852)
327 KOG0978 E3 ubiquitin ligase in 63.3 4.3E+02 0.0094 34.1 24.3 26 336-361 483-508 (698)
328 PF09755 DUF2046: Uncharacteri 63.2 2.9E+02 0.0064 32.1 25.8 9 481-489 193-201 (310)
329 PF01637 Arch_ATPase: Archaeal 63.0 2.5 5.3E-05 44.5 0.1 29 562-590 10-38 (234)
330 PF10267 Tmemb_cc2: Predicted 63.0 2.3E+02 0.0049 34.1 16.0 25 421-445 266-290 (395)
331 PF13191 AAA_16: AAA ATPase do 62.9 2.1 4.5E-05 43.7 -0.5 28 562-589 14-41 (185)
332 PF06818 Fez1: Fez1; InterPro 62.6 2.4E+02 0.0052 30.9 17.2 22 343-364 25-46 (202)
333 PF00448 SRP54: SRP54-type pro 62.4 2.4 5.1E-05 45.5 -0.2 18 574-591 3-20 (196)
334 KOG1854 Mitochondrial inner me 61.8 4.3E+02 0.0093 33.6 23.3 24 483-506 471-497 (657)
335 KOG0946 ER-Golgi vesicle-tethe 61.8 4.8E+02 0.01 34.1 22.0 19 116-134 383-401 (970)
336 PF13479 AAA_24: AAA domain 61.7 3.2 7E-05 44.7 0.7 20 572-591 3-22 (213)
337 KOG4677 Golgi integral membran 61.6 3.7E+02 0.0081 32.7 24.2 29 264-292 216-244 (554)
338 KOG1853 LIS1-interacting prote 61.5 2.8E+02 0.0061 31.3 20.5 9 311-319 49-57 (333)
339 smart00806 AIP3 Actin interact 61.4 2.7E+02 0.0059 33.7 16.2 21 350-370 156-176 (426)
340 PF11559 ADIP: Afadin- and alp 61.3 2E+02 0.0043 29.4 16.3 26 337-362 61-86 (151)
341 PRK13894 conjugal transfer ATP 61.1 3.9 8.5E-05 47.2 1.3 29 561-590 138-166 (319)
342 TIGR01005 eps_transp_fam exopo 61.0 4.7E+02 0.01 33.7 22.0 18 250-267 164-181 (754)
343 TIGR03545 conserved hypothetic 61.0 58 0.0012 40.7 11.2 30 777-806 472-501 (555)
344 PF01695 IstB_IS21: IstB-like 60.8 4.5 9.7E-05 42.7 1.5 19 573-591 48-66 (178)
345 KOG2412 Nuclear-export-signal 60.6 4.2E+02 0.0091 33.0 18.6 16 483-498 358-373 (591)
346 TIGR02782 TrbB_P P-type conjug 60.5 4.1 8.8E-05 46.6 1.2 29 561-590 122-150 (299)
347 PF13207 AAA_17: AAA domain; P 60.3 3.4 7.3E-05 39.6 0.5 16 574-589 1-16 (121)
348 PF11932 DUF3450: Protein of u 60.1 2.3E+02 0.0051 31.5 14.9 14 486-499 158-171 (251)
349 PF10267 Tmemb_cc2: Predicted 59.7 1.6E+02 0.0034 35.4 14.0 45 347-405 274-318 (395)
350 PF05557 MAD: Mitotic checkpoi 59.5 3 6.6E-05 53.1 0.0 40 839-878 603-643 (722)
351 COG1842 PspA Phage shock prote 59.4 2.9E+02 0.0062 30.7 16.4 130 358-493 4-133 (225)
352 TIGR00631 uvrb excinuclease AB 59.3 10 0.00022 48.0 4.6 93 541-638 2-98 (655)
353 PRK00409 recombination and DNA 59.2 1.7E+02 0.0037 38.2 15.4 19 117-135 271-289 (782)
354 COG5008 PilU Tfp pilus assembl 59.0 5.9 0.00013 44.7 2.1 30 561-590 116-145 (375)
355 PF03904 DUF334: Domain of unk 58.7 1.6E+02 0.0034 32.8 12.6 97 306-404 42-150 (230)
356 KOG4603 TBP-1 interacting prot 58.6 1.8E+02 0.0039 31.0 12.4 21 471-491 160-180 (201)
357 PF00004 AAA: ATPase family as 57.6 3.5 7.5E-05 39.6 0.0 16 575-590 1-16 (132)
358 PF15450 DUF4631: Domain of un 57.3 4.7E+02 0.01 32.5 25.2 42 325-366 341-382 (531)
359 PRK10929 putative mechanosensi 57.2 6.7E+02 0.014 34.3 26.2 27 453-479 401-427 (1109)
360 cd07655 F-BAR_PACSIN The F-BAR 57.2 3.2E+02 0.007 30.6 18.7 25 350-374 127-151 (258)
361 TIGR03545 conserved hypothetic 57.1 2.4E+02 0.0052 35.4 15.6 18 540-557 356-373 (555)
362 KOG2072 Translation initiation 56.9 5.8E+02 0.013 33.5 23.7 42 32-74 292-333 (988)
363 PF02562 PhoH: PhoH-like prote 56.7 7.2 0.00016 42.4 2.3 27 563-591 12-38 (205)
364 smart00487 DEXDc DEAD-like hel 56.2 6.3 0.00014 39.6 1.7 28 563-591 16-43 (201)
365 PRK13833 conjugal transfer pro 56.1 4.9 0.00011 46.6 0.9 28 562-590 135-162 (323)
366 KOG1760 Molecular chaperone Pr 56.1 1.2E+02 0.0026 30.7 10.1 36 371-406 81-116 (131)
367 PF00769 ERM: Ezrin/radixin/mo 56.0 3.4E+02 0.0073 30.5 16.4 27 321-347 47-73 (246)
368 PF14662 CCDC155: Coiled-coil 55.7 3.1E+02 0.0066 29.9 22.1 11 307-317 43-53 (193)
369 KOG0247 Kinesin-like protein [ 55.6 2.5E+02 0.0053 36.2 15.0 22 254-275 490-511 (809)
370 PF09738 DUF2051: Double stran 55.5 1.7E+02 0.0037 33.9 13.0 17 348-364 111-127 (302)
371 KOG4460 Nuclear pore complex, 55.5 4.2E+02 0.0092 33.1 16.4 25 450-474 656-680 (741)
372 PRK00106 hypothetical protein; 55.5 5.2E+02 0.011 32.5 22.5 13 482-494 206-218 (535)
373 PRK12723 flagellar biosynthesi 55.3 7.7 0.00017 46.1 2.4 20 572-591 174-193 (388)
374 KOG0727 26S proteasome regulat 55.2 78 0.0017 35.8 9.8 81 541-621 152-251 (408)
375 PRK09183 transposase/IS protei 55.0 5.9 0.00013 44.3 1.3 21 569-591 101-121 (259)
376 COG1201 Lhr Lhr-like helicases 55.0 9 0.00019 49.4 3.1 26 563-590 30-55 (814)
377 COG4962 CpaF Flp pilus assembl 54.9 5.6 0.00012 46.3 1.1 30 560-590 162-191 (355)
378 PF13086 AAA_11: AAA domain; P 54.7 5.2 0.00011 42.0 0.8 28 563-591 9-36 (236)
379 PF10211 Ax_dynein_light: Axon 54.6 2.6E+02 0.0056 30.1 13.5 122 229-373 65-187 (189)
380 KOG3091 Nuclear pore complex, 54.6 2.4E+02 0.0053 34.6 14.4 16 264-279 337-352 (508)
381 TIGR00635 ruvB Holliday juncti 54.4 6.8 0.00015 44.1 1.7 40 551-590 7-48 (305)
382 cd01130 VirB11-like_ATPase Typ 54.2 6.2 0.00014 41.5 1.3 29 561-590 15-43 (186)
383 TIGR03007 pepcterm_ChnLen poly 53.6 4.9E+02 0.011 31.7 22.4 18 250-267 131-148 (498)
384 COG1223 Predicted ATPase (AAA+ 53.3 8.2 0.00018 43.5 2.0 47 572-618 151-210 (368)
385 PF10498 IFT57: Intra-flagella 53.2 3.4E+02 0.0073 32.3 15.2 112 286-408 213-324 (359)
386 TIGR01000 bacteriocin_acc bact 53.2 4.9E+02 0.011 31.5 19.6 6 623-628 412-417 (457)
387 PF00063 Myosin_head: Myosin h 52.9 6.6 0.00014 49.8 1.5 36 554-589 66-102 (689)
388 KOG1265 Phospholipase C [Lipid 52.4 3.1E+02 0.0067 36.0 15.2 135 257-396 1041-1175(1189)
389 PLN03229 acetyl-coenzyme A car 52.3 1.9E+02 0.0042 37.2 13.6 68 333-400 460-543 (762)
390 PF15450 DUF4631: Domain of un 52.0 5.6E+02 0.012 31.9 25.8 17 63-79 60-76 (531)
391 KOG0972 Huntingtin interacting 51.9 2.6E+02 0.0057 32.2 13.2 43 284-326 218-260 (384)
392 KOG4572 Predicted DNA-binding 51.8 6.8E+02 0.015 32.8 22.4 24 841-864 1355-1378(1424)
393 COG0419 SbcC ATPase involved i 51.6 7.2E+02 0.016 33.0 29.9 14 194-207 132-145 (908)
394 PF07106 TBPIP: Tat binding pr 51.6 1.8E+02 0.004 30.3 11.7 20 468-487 150-169 (169)
395 PF06309 Torsin: Torsin; Inte 51.5 5.7 0.00012 40.1 0.4 15 575-589 56-70 (127)
396 cd00268 DEADc DEAD-box helicas 51.5 8.2 0.00018 40.4 1.7 25 563-589 29-53 (203)
397 PTZ00424 helicase 45; Provisio 51.2 7.5 0.00016 45.3 1.4 27 562-590 57-83 (401)
398 TIGR03017 EpsF chain length de 51.0 5E+02 0.011 31.0 23.9 20 439-458 343-362 (444)
399 PF00580 UvrD-helicase: UvrD/R 50.7 5.5 0.00012 44.1 0.2 21 571-591 12-32 (315)
400 PF01580 FtsK_SpoIIIE: FtsK/Sp 50.6 4.6 0.0001 42.8 -0.4 18 574-591 40-57 (205)
401 KOG0989 Replication factor C, 50.5 10 0.00022 43.7 2.2 43 548-590 31-75 (346)
402 KOG1103 Predicted coiled-coil 50.5 4.8E+02 0.011 30.7 17.7 22 381-402 241-262 (561)
403 PF01576 Myosin_tail_1: Myosin 50.5 5.2 0.00011 52.1 0.0 27 381-407 457-483 (859)
404 PRK11519 tyrosine kinase; Prov 50.5 3.5E+02 0.0075 34.9 16.1 21 571-591 526-546 (719)
405 PRK10361 DNA recombination pro 50.3 5.8E+02 0.013 31.5 22.5 13 756-768 284-296 (475)
406 PF05970 PIF1: PIF1-like helic 50.2 8.3 0.00018 45.1 1.6 37 550-589 3-39 (364)
407 PRK13342 recombination factor 50.0 8.3 0.00018 45.9 1.6 39 552-590 16-54 (413)
408 KOG0239 Kinesin (KAR3 subfamil 50.0 4.2E+02 0.009 34.1 16.3 27 57-83 22-48 (670)
409 PF10234 Cluap1: Clusterin-ass 49.8 4.5E+02 0.0097 30.1 17.2 32 101-132 2-34 (267)
410 PRK11776 ATP-dependent RNA hel 49.7 8.5 0.00018 46.2 1.6 26 562-589 33-58 (460)
411 PF03962 Mnd1: Mnd1 family; I 49.7 2.2E+02 0.0047 30.7 12.0 40 433-472 112-151 (188)
412 PF00910 RNA_helicase: RNA hel 49.7 4.6 9.9E-05 38.8 -0.5 16 575-590 1-16 (107)
413 TIGR03499 FlhF flagellar biosy 49.6 5.6 0.00012 45.0 0.1 18 574-591 196-213 (282)
414 PF13671 AAA_33: AAA domain; P 49.4 6.2 0.00013 38.8 0.3 15 575-589 2-16 (143)
415 COG0497 RecN ATPase involved i 49.3 6.2E+02 0.013 31.9 17.1 148 226-394 237-387 (557)
416 PRK09841 cryptic autophosphory 49.3 6.3E+02 0.014 32.7 18.2 20 572-591 532-551 (726)
417 PF03215 Rad17: Rad17 cell cyc 49.1 8.3 0.00018 47.5 1.4 32 559-590 30-63 (519)
418 KOG0962 DNA repair protein RAD 49.0 9.1E+02 0.02 33.4 26.5 18 784-803 1200-1217(1294)
419 TIGR01069 mutS2 MutS2 family p 49.0 2.8E+02 0.006 36.3 14.9 19 116-134 265-283 (771)
420 PF00804 Syntaxin: Syntaxin; 49.0 1.8E+02 0.0039 26.9 10.1 66 341-407 6-71 (103)
421 PF07111 HCR: Alpha helical co 48.7 7.1E+02 0.015 32.1 26.4 43 353-395 137-179 (739)
422 KOG0335 ATP-dependent RNA heli 48.7 5.8 0.00013 48.0 -0.0 66 564-635 105-189 (482)
423 PRK13851 type IV secretion sys 48.6 5.8 0.00013 46.3 -0.0 30 561-591 152-181 (344)
424 PF06785 UPF0242: Uncharacteri 48.5 5.2E+02 0.011 30.5 16.5 13 604-616 282-294 (401)
425 PF09738 DUF2051: Double stran 48.4 3.1E+02 0.0067 31.9 13.6 16 351-366 79-94 (302)
426 PRK13900 type IV secretion sys 47.9 8.3 0.00018 44.8 1.1 29 561-590 150-178 (332)
427 KOG0982 Centrosomal protein Nu 47.8 6E+02 0.013 30.9 19.8 42 420-461 321-362 (502)
428 PF05496 RuvB_N: Holliday junc 47.2 17 0.00036 40.3 3.2 42 547-588 23-66 (233)
429 PF13238 AAA_18: AAA domain; P 47.1 7 0.00015 37.3 0.3 15 575-589 1-15 (129)
430 cd07676 F-BAR_FBP17 The F-BAR 46.5 4.7E+02 0.01 29.4 21.8 28 349-376 121-148 (253)
431 PF07724 AAA_2: AAA domain (Cd 46.3 7.5 0.00016 40.8 0.4 17 573-589 4-20 (171)
432 PTZ00361 26 proteosome regulat 46.2 16 0.00034 44.2 3.1 95 496-590 127-235 (438)
433 PRK11192 ATP-dependent RNA hel 46.0 10 0.00022 45.1 1.5 26 562-589 30-55 (434)
434 KOG0249 LAR-interacting protei 46.0 7.9E+02 0.017 31.8 21.6 31 540-573 348-378 (916)
435 PRK00409 recombination and DNA 46.0 3.6E+02 0.0079 35.3 15.3 36 559-612 720-756 (782)
436 PRK04195 replication factor C 45.8 13 0.00027 45.3 2.3 33 558-590 24-57 (482)
437 PRK13764 ATPase; Provisional 45.6 8.7 0.00019 48.1 0.8 20 572-591 257-276 (602)
438 TIGR00763 lon ATP-dependent pr 45.6 57 0.0012 42.2 8.2 16 574-589 349-364 (775)
439 PF05266 DUF724: Protein of un 45.5 4.3E+02 0.0093 28.6 15.4 18 344-361 154-171 (190)
440 COG4717 Uncharacterized conser 45.5 8.7E+02 0.019 32.2 24.0 40 433-476 813-852 (984)
441 PF07728 AAA_5: AAA domain (dy 45.4 6.2 0.00014 38.9 -0.3 16 575-590 2-17 (139)
442 cd01383 MYSc_type_VIII Myosin 45.1 15 0.00033 46.7 2.9 36 554-589 73-109 (677)
443 PF05622 HOOK: HOOK protein; 44.4 7.4 0.00016 49.7 0.0 14 31-44 75-88 (713)
444 PF03915 AIP3: Actin interacti 44.4 5.5E+02 0.012 31.3 15.4 140 350-489 152-315 (424)
445 PF04912 Dynamitin: Dynamitin 44.3 6.2E+02 0.013 30.1 17.9 32 439-470 351-382 (388)
446 COG4026 Uncharacterized protei 44.3 3.4E+02 0.0074 30.2 12.2 18 383-400 182-199 (290)
447 TIGR03752 conj_TIGR03752 integ 44.3 1.6E+02 0.0036 35.9 11.0 12 539-550 194-205 (472)
448 PHA00729 NTP-binding motif con 44.2 15 0.00032 40.7 2.2 30 562-591 7-36 (226)
449 KOG4572 Predicted DNA-binding 43.9 8.8E+02 0.019 31.8 21.0 19 481-499 1100-1118(1424)
450 KOG0728 26S proteasome regulat 43.6 1.8E+02 0.004 33.0 10.4 16 572-587 181-196 (404)
451 KOG0579 Ste20-like serine/thre 43.5 8.5E+02 0.018 31.5 23.8 194 259-465 817-1021(1187)
452 TIGR00348 hsdR type I site-spe 43.5 13 0.00029 47.1 2.1 31 560-591 247-282 (667)
453 COG1222 RPT1 ATP-dependent 26S 43.5 13 0.00027 43.8 1.6 80 542-621 149-247 (406)
454 PRK04837 ATP-dependent RNA hel 43.4 12 0.00025 44.6 1.4 25 563-589 38-62 (423)
455 PF05700 BCAS2: Breast carcino 43.4 4.8E+02 0.01 28.6 15.6 23 382-404 140-162 (221)
456 PF09321 DUF1978: Domain of un 43.3 4.6E+02 0.0099 29.6 13.3 35 117-151 13-47 (241)
457 cd01385 MYSc_type_IX Myosin mo 43.3 16 0.00035 46.6 2.7 36 554-589 75-111 (692)
458 PF10146 zf-C4H2: Zinc finger- 43.2 5.1E+02 0.011 28.9 13.9 14 433-446 90-103 (230)
459 cd00124 MYSc Myosin motor doma 43.0 16 0.00034 46.6 2.6 36 554-589 67-103 (679)
460 PHA02544 44 clamp loader, smal 43.0 11 0.00025 42.5 1.2 23 569-591 39-62 (316)
461 KOG3850 Predicted membrane pro 43.0 6.7E+02 0.014 30.1 17.3 48 316-366 262-309 (455)
462 PF06414 Zeta_toxin: Zeta toxi 43.0 9.1 0.0002 40.7 0.4 21 570-590 13-33 (199)
463 KOG0926 DEAH-box RNA helicase 42.9 16 0.00034 46.7 2.4 18 572-589 271-288 (1172)
464 PRK10590 ATP-dependent RNA hel 42.9 13 0.00028 44.8 1.7 26 562-589 30-55 (456)
465 PRK06547 hypothetical protein; 42.8 16 0.00035 38.4 2.2 27 563-589 6-32 (172)
466 cd01381 MYSc_type_VII Myosin m 42.7 18 0.00038 46.1 2.9 36 554-589 67-103 (671)
467 PF03962 Mnd1: Mnd1 family; I 42.6 4.6E+02 0.01 28.2 15.0 16 227-242 27-42 (188)
468 PRK14722 flhF flagellar biosyn 42.6 8.6 0.00019 45.4 0.2 19 573-591 138-156 (374)
469 cd01384 MYSc_type_XI Myosin mo 42.5 17 0.00037 46.2 2.8 35 555-589 70-105 (674)
470 PF07106 TBPIP: Tat binding pr 42.5 2E+02 0.0044 30.0 10.3 39 306-344 71-109 (169)
471 PRK11448 hsdR type I restricti 42.3 13 0.00028 49.8 1.8 41 557-608 419-459 (1123)
472 PF11932 DUF3450: Protein of u 42.2 5.3E+02 0.011 28.7 16.2 25 322-346 43-67 (251)
473 TIGR00634 recN DNA repair prot 42.1 7.9E+02 0.017 30.7 22.6 177 307-484 168-374 (563)
474 TIGR02881 spore_V_K stage V sp 41.8 9 0.00019 42.5 0.2 19 573-591 43-61 (261)
475 PF11172 DUF2959: Protein of u 41.8 5.1E+02 0.011 28.4 16.0 40 384-423 70-109 (201)
476 smart00242 MYSc Myosin. Large 41.8 18 0.00038 46.1 2.7 36 554-589 73-109 (677)
477 KOG4403 Cell surface glycoprot 41.6 7.3E+02 0.016 30.2 18.5 34 461-494 395-428 (575)
478 cd01378 MYSc_type_I Myosin mot 41.4 19 0.00041 45.8 2.9 35 555-589 68-103 (674)
479 PRK11281 hypothetical protein; 41.1 1.1E+03 0.024 32.3 29.5 10 963-972 1032-1041(1113)
480 KOG1655 Protein involved in va 41.0 5.1E+02 0.011 28.4 12.7 48 432-479 98-149 (218)
481 PRK10869 recombination and rep 40.8 8.3E+02 0.018 30.6 26.9 22 596-617 459-480 (553)
482 KOG4807 F-actin binding protei 40.6 7.2E+02 0.016 29.9 20.0 46 256-310 347-399 (593)
483 cd01387 MYSc_type_XV Myosin mo 40.6 20 0.00043 45.7 2.9 36 554-589 68-104 (677)
484 PF08614 ATG16: Autophagy prot 40.5 4.1E+02 0.0088 28.5 12.4 12 266-277 72-83 (194)
485 KOG0992 Uncharacterized conser 40.4 8.2E+02 0.018 30.4 25.8 14 483-496 406-419 (613)
486 COG1219 ClpX ATP-dependent pro 40.3 12 0.00025 43.5 0.7 17 572-588 97-113 (408)
487 KOG4360 Uncharacterized coiled 40.2 8.3E+02 0.018 30.4 16.8 18 599-616 355-372 (596)
488 COG0419 SbcC ATPase involved i 40.1 1E+03 0.023 31.6 30.1 9 968-976 850-858 (908)
489 PF05529 Bap31: B-cell recepto 39.8 1.2E+02 0.0026 32.2 8.3 7 278-284 99-105 (192)
490 PRK10536 hypothetical protein; 39.6 13 0.00028 41.9 1.0 42 541-591 52-93 (262)
491 cd01377 MYSc_type_II Myosin mo 39.5 19 0.00042 45.9 2.6 36 554-589 72-108 (693)
492 PRK11889 flhF flagellar biosyn 39.4 18 0.00038 43.4 2.1 38 552-589 215-258 (436)
493 KOG2077 JNK/SAPK-associated pr 39.3 6E+02 0.013 31.9 14.4 140 264-431 301-440 (832)
494 PF08614 ATG16: Autophagy prot 39.2 2.9E+02 0.0063 29.6 11.1 124 263-390 69-192 (194)
495 PRK00080 ruvB Holliday junctio 38.9 16 0.00036 41.9 1.7 41 547-587 24-66 (328)
496 PF12761 End3: Actin cytoskele 38.7 1.8E+02 0.0038 31.7 9.1 98 315-419 97-194 (195)
497 KOG1899 LAR transmembrane tyro 38.7 9.5E+02 0.021 30.7 18.4 211 291-512 109-323 (861)
498 cd01380 MYSc_type_V Myosin mot 38.7 21 0.00045 45.6 2.7 33 556-588 69-102 (691)
499 cd01382 MYSc_type_VI Myosin mo 38.6 20 0.00044 45.9 2.6 33 556-588 74-107 (717)
500 PRK00771 signal recognition pa 38.6 25 0.00055 42.5 3.2 45 544-588 58-111 (437)
No 1
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=100.00 E-value=3.6e-97 Score=888.64 Aligned_cols=594 Identities=37% Similarity=0.502 Sum_probs=508.3
Q ss_pred CCCCcchHHHHHHHHHhHhhhhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHhhhhhHHHhhHHHHHHHHHHHhhhhcc
Q 001464 225 DNASTKSLFNIVNRILDECVERKNGDAPHRVACLLRKVVPLIERRTATQYQNFKNQNNLFRAREEKYKSRIRVLETLTVG 304 (1073)
Q Consensus 225 ~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~l~kvv~e~e~ris~q~~~~~~q~~~~~~~~~~~~~~~~~le~l~~~ 304 (1073)
.+.+...+..+...+++...+++...+.......++..+.++..+++.+...+.+....++..++.+.+.+..+.+++.+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~ 150 (670)
T KOG0239|consen 71 SNQPGGLLARLFKELIDLANSDKTSNVVEAYNERLRDLLSELQSNLSELNMALLESVEELSQAEEDNPSIFVSLLELAQE 150 (670)
T ss_pred hcCcchhHHHhhhhcccccccCCCchhHHHHHHHHhhhccccccchhhhhhhhhhhhHhhhhhhcccccHHHHHHHHHhh
Confidence 36788788888888888888888877777778899999999999999999999999999999999999999999998877
Q ss_pred chhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001464 305 TTEENQVVANQLERIKTEKTNIAQKEKLEEQNALRLKKENDDRDIEISTLKQDLELAKRTHELHCLQLEEQIYETKIESQ 384 (1073)
Q Consensus 305 ~~ee~~~~~~~l~~l~~e~~k~eek~~~~e~~~~~l~ke~e~~~~e~~~Lk~ele~~k~~~e~~~~~le~~~~~~k~ele 384 (1073)
+........+. .-....+ .+....++......++..+.++|+..+..++..+.+++. ....+..|+
T Consensus 151 ~~~~~~~~~~~------------~~~~~~~-~~~~~~k~~~~~~~~~~~~~~~l~~v~~~~~~~~~~l~~-~~~~~~~l~ 216 (670)
T KOG0239|consen 151 NRGLYLDLSKV------------TPENSLS-LLDLALKESLKLESDLGDLVTELEHVTNSISELESVLKS-AQEERRVLA 216 (670)
T ss_pred hcccccccccc------------chhhhHH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHH
Confidence 76544332211 0000011 233345566667778999999999999999998888877 233334444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHhHHHhhHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHhhhhh
Q 001464 385 KKLQELERLLTVSKKKVEELESLSESKSQRWKRIEHSYQSFMGCQLGVIQDLRVAFESTKHEVLETKKNYSKEFDCLGLN 464 (1073)
Q Consensus 385 ~~l~e~e~~l~~~~~~v~~le~~~~~~~~~~~~~~~~~~~~l~~Q~~~l~el~~~~~~~k~ei~~~~~~~~~e~~~l~~~ 464 (1073)
..+. .+...+..++.++.......+ .++..+..+++|+.....++.++...++.+.+.+..++..
T Consensus 217 ~~~~----~~~~~~~~~~~l~~~~~~~~~-----------~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 281 (670)
T KOG0239|consen 217 DSLG----NYADLRRNIKPLEGLESTIKK-----------KIQALQQELEELKAELKELNDQVSLLTREVQEALKESNTL 281 (670)
T ss_pred HHhh----hhhhHHHhhhhhhhhhhHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4433 333445555555554433332 2555667788999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHH---HHhhhhhhhhhhccCCEEEEeecCCCCCcccCC-CccEEEEccCCEEEEeCCCCCCCCCcee
Q 001464 465 LKRLIDAAEKYHVIL---AENRRLYNEVQDLKGNIRVYCRIRPFLPGQSKK-QTTIEYIGENGELVVSNPLKQGKDNHRL 540 (1073)
Q Consensus 465 ~~~l~~~~~~y~~~l---~erRkL~N~vqeLKGnIRV~~RVRP~l~~e~~~-~~~v~~~~~~~~l~v~~p~~~~~~~~k~ 540 (1073)
+..|.+....|+... .+||+|||+|+||||||||||||||+++++... ...+...++.+++.+..|....+...+.
T Consensus 282 ~~~L~~~~~~l~~~~~e~~~r~kL~N~i~eLkGnIRV~CRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (670)
T KOG0239|consen 282 QSDLESLEENLVEKKKEKEERRKLHNEILELKGNIRVFCRVRPLLPSEKQRLQSKVIDTEEQGEVQVDSPDKGDKLEPQS 361 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCceEEEEecCCCccccccccccccccCCcceeEeecCCCCCCCcccc
Confidence 999999998888777 899999999999999999999999999998764 4555555555778899998877777778
Q ss_pred eeeceeeCCCCChHHHHhchHHHHHHhhcCcceeEEeecccCCCCCeeeecCCCCCCCccchhHHHHHHHHHHHHhccCC
Q 001464 541 FKFNKVFGPEASQEEVFLDTRPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPCISSTEDWGVNYRALNDLFEISESRKNS 620 (1073)
Q Consensus 541 F~FD~VF~~~atQeeVf~~~~pLV~svLdGyN~~IfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~~~~~ 620 (1073)
|.||+||+|.++|++||.++.|+|+++|||||+||||||||||||||||.|| +++++|||||++++||..+.....+
T Consensus 362 f~fdkVf~p~~sQ~~VF~e~~~lv~S~lDGYnVCIFAYGQTGSGKTyTM~G~---~~~~~Giipral~~lF~~~~~~~~g 438 (670)
T KOG0239|consen 362 FKFDKVFGPLASQDDVFEEVSPLVQSALDGYNVCIFAYGQTGSGKTYTMSGP---TPEDPGIIPRALEKLFRTITSLKSG 438 (670)
T ss_pred ceeeeecCCcccHHHHHHHHHHHHHHHhcCcceeEEEecccCCCccccccCC---CcccCCccHHHHHHHHHHHHhhccC
Confidence 9999999999999999999999999999999999999999999999999996 5688999999999999999998889
Q ss_pred ceEEEEEEEEEEecceeeeccCCCCCCcccccccccCCCceecCCcEEEEecCHHHHHHHHHhhhcccccccCCCcCCCC
Q 001464 621 ILYEVGVQMVEIYNEQVRDLLSSDGPQRRLGIWNATLPNGLAVPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSS 700 (1073)
Q Consensus 621 ~~~~V~vS~lEIYnE~V~DLL~~~~~~~~l~i~~~~~~g~~vv~~~~~~vvss~eev~~lL~~G~~nR~~~sT~~N~~SS 700 (1073)
|.|.+.++|+|||||+|+|||.+.....++.|..+. .+...+.+++...|.+.+++..+++.|..||++++|++|++||
T Consensus 439 ~~y~~~~s~~EIYNe~i~DlL~~~~~~~k~~I~~~~-~~~~~V~~~t~~~V~s~~~v~~ll~~g~~nRsv~~T~~Ne~SS 517 (670)
T KOG0239|consen 439 WKYDKTVSMLEIYNEAIRDLLSDESYVGKLEIVDDA-EGNLMVPLLTVIKVGSSEEVDILLEIGLSNRSVASTASNERSS 517 (670)
T ss_pred ceEEeeeehhHHHHHHHHHhccccccccceeEEEcC-CCceecccceEEecCCHHHHHHHHHHhhccccccccccchhhh
Confidence 999999999999999999999877534455555444 4558888888889999999999999999999999999999999
Q ss_pred CCccEEEEEEEeEecCCCcEEEeeeEEEecCCCccccCCcchhhhHHHHHHHhhhHHHHHHHHHHHhcCCCCccCcCchh
Q 001464 701 RSHSILTIHVRGTDLKNGAILRGSLHLIDLAGSERVDRSEATGDRLREAQHINKSLSALGDVIFALAHKNPHVPYRNSKL 780 (1073)
Q Consensus 701 RSH~IftI~V~~~~~~~~~~~~skL~LVDLAGSER~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~k~~hVPYRdSKL 780 (1073)
|||+||+|+|.+.+..++..+.|+|+|||||||||+++++++|+|++|+++||+||++||+||.||+.++.|||||||||
T Consensus 518 RSH~v~~v~v~g~~~~t~~~~~g~l~LVDLAGSER~~~s~~tG~RlkE~Q~INkSLS~LgdVi~AL~~k~~HiPyRNSKL 597 (670)
T KOG0239|consen 518 RSHLVFRVRIRGINELTGIRVTGVLNLVDLAGSERVSKSGVTGERLKEAQNINKSLSALGDVISALASKRSHIPYRNSKL 597 (670)
T ss_pred ccceEEEEEEeccccCcccccccceeEeecccCcccCcCCCchhhhHHHHHhchhhhhhHHHHHHHhhcCCCCcccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccCCCcceeeEEecCCCCCCHHHHHHHHHHHhHhccccccccccCCCcchHHHHHHHHHHHHHHH
Q 001464 781 TQVLQSSLGGQAKTLMMVQLNPDVDSYSETISTLKFAERVSGVELGAARSNKEGSDVRELMEQVGSLKDII 851 (1073)
Q Consensus 781 TrLLqdSLGGnsKTlmI~~ISP~~~~~~ETlsTLrFA~Rak~I~~~~~k~~~~~~~v~eL~~qv~~Lk~~i 851 (1073)
|+|||+||||++||+|||+|||...++.||+++|+||+||+.+++++++..........++..++.++..+
T Consensus 598 T~lLq~sLGG~sKTLmfv~isP~~~~~~Etl~sL~FA~rv~~~~lG~a~~~~~~~~~~~~~~~~~~~~~~~ 668 (670)
T KOG0239|consen 598 TQLLQDSLGGDSKTLMFVNISPAAAALFETLCSLRFATRVRSVELGSARKQVSTSDDVSLKRFGQLEKLST 668 (670)
T ss_pred HHHhHhhhCCccceeeEEEeCccHHHHhhhhhccchHHHhhceecccccccccccchhhhhhhhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999988888888877777766543
No 2
>KOG4280 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2.3e-84 Score=755.75 Aligned_cols=353 Identities=41% Similarity=0.653 Sum_probs=309.7
Q ss_pred cCCEEEEeecCCCCCcccCC--CccEEEEccCCEEEEeCCCCCCCCCceeeeeceeeCCCCChHHHHhc-hHHHHHHhhc
Q 001464 493 KGNIRVYCRIRPFLPGQSKK--QTTIEYIGENGELVVSNPLKQGKDNHRLFKFNKVFGPEASQEEVFLD-TRPLIRSVLD 569 (1073)
Q Consensus 493 KGnIRV~~RVRP~l~~e~~~--~~~v~~~~~~~~l~v~~p~~~~~~~~k~F~FD~VF~~~atQeeVf~~-~~pLV~svLd 569 (1073)
.-+|+|++||||+.+.+... ...+.+....+.+.+.+|..+.....++|+||+||+++++|++||.. +.|+|++||+
T Consensus 4 ~~~v~vvvr~rPl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ftfD~vf~~~stQ~dvy~~~~~~lV~svl~ 83 (574)
T KOG4280|consen 4 ACKVKVVVRVRPLSAAERSELLKSILSVDPAHGRVSLKNPVAGIEGKPKSFTFDAVFDSDSTQDDVYQETVAPLVESVLE 83 (574)
T ss_pred ccceeEEEeecCCCchhhhhhhccccccccccceeeecCCcccccCCCCCceeeeeecCCCCHHHHHHHHhHHHHHHHhc
Confidence 35799999999998755432 23445555667788888776656667889999999999999999998 5999999999
Q ss_pred CcceeEEeecccCCCCCeeeecCCCCCCCccchhHHHHHHHHHHHHhccCCceEEEEEEEEEEecceeeeccCCCCCCcc
Q 001464 570 GYNVCIFAYGQTGSGKTYTMSGPCISSTEDWGVNYRALNDLFEISESRKNSILYEVGVQMVEIYNEQVRDLLSSDGPQRR 649 (1073)
Q Consensus 570 GyN~~IfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~V~DLL~~~~~~~~ 649 (1073)
|||+||||||||||||||||.|+ +++..|||||++.+||..++.+.+...|.|+|||+|||||+|+|||++..+ +.
T Consensus 84 GyNgtvFaYGQTGsGKTyTM~G~---~~~~~GiiPraf~~LF~~I~~~~~~~~f~vrvS~lEiYnE~i~DLL~~~~~-~~ 159 (574)
T KOG4280|consen 84 GYNGTVFAYGQTGSGKTYTMIGP---DPELRGLIPRAFEHLFRHIDERKEKTRFLVRVSYLEIYNESIRDLLSPVNP-KG 159 (574)
T ss_pred ccCceEEEeccCCCCCceEeeCC---ChhhCCchhHHHHHHHHHHHhccccceEEEEeehHHHHhHHHHHHhCccCc-CC
Confidence 99999999999999999999997 378899999999999999998887779999999999999999999998764 45
Q ss_pred cccccccCCCceecCCcEEEEecCHHHHHHHHHhhhcccccccCCCcCCCCCCccEEEEEEEeEec-C--CCcEEEeeeE
Q 001464 650 LGIWNATLPNGLAVPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSILTIHVRGTDL-K--NGAILRGSLH 726 (1073)
Q Consensus 650 l~i~~~~~~g~~vv~~~~~~vvss~eev~~lL~~G~~nR~~~sT~~N~~SSRSH~IftI~V~~~~~-~--~~~~~~skL~ 726 (1073)
+.++.+. ..|+++.+++...+.+++|++.+|..|.++|.+++|.||..|||||+||||+|+.... . .....+|+||
T Consensus 160 l~lre~p-~~Gv~V~nlse~~v~s~~d~~~~l~~G~~nR~vgat~mn~~SsRSH~ift~~i~~~~~~~~~~~~~~~~rln 238 (574)
T KOG4280|consen 160 LELREDP-KCGVYVENLSEMDVESAEDAQQLLVVGLANRRVGATSMNEESSRSHAIFTIHIESSEKSDGGLMSGRSSKLN 238 (574)
T ss_pred ceeeEcC-CCceEecCcceeecCCHHHHHHHHHHHHhhcchhhccCCcccccceEEEEEEEEeecccCCCccccccceee
Confidence 6666655 6788999999999999999999999999999999999999999999999999998321 2 2346789999
Q ss_pred EEecCCCccccCCcchhhhHHHHHHHhhhHHHHHHHHHHHhcCCC-CccCcCchhhhhhhhccCCCcceeeEEecCCCCC
Q 001464 727 LIDLAGSERVDRSEATGDRLREAQHINKSLSALGDVIFALAHKNP-HVPYRNSKLTQVLQSSLGGQAKTLMMVQLNPDVD 805 (1073)
Q Consensus 727 LVDLAGSER~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~k~~-hVPYRdSKLTrLLqdSLGGnsKTlmI~~ISP~~~ 805 (1073)
|||||||||..++++.|+|++||.+||+||++||+||.+|++..+ ||||||||||+||||||||||||+|||||+|+..
T Consensus 239 lvDLagsEr~~~tga~G~rlkEa~~IN~SLs~LG~vI~aLvd~~~~HIPYRdSkLT~LLqdSLGGN~kT~mianvsp~~~ 318 (574)
T KOG4280|consen 239 LVDLAGSERQSKTGAEGERLKEATNINLSLSALGNVISALVDGSKTHIPYRDSKLTRLLQDSLGGNSKTTMIANVSPSSD 318 (574)
T ss_pred eeeccchhhhcccCccchhhhhhcccchhHHHHHHHHHHHhccccCCCCcchhHHHHHHHHHcCCCceEEEEEecCchhh
Confidence 999999999999999999999999999999999999999998876 9999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhHhccccccccccCCCc-chHHHHHHHHHHHHHH
Q 001464 806 SYSETISTLKFAERVSGVELGAARSNKEG-SDVRELMEQVGSLKDI 850 (1073)
Q Consensus 806 ~~~ETlsTLrFA~Rak~I~~~~~k~~~~~-~~v~eL~~qv~~Lk~~ 850 (1073)
+++||++||+||+|++.|++.+..+.... ..+++|++++..|+..
T Consensus 319 ~~~ETlsTLrfA~Rak~I~nk~~ined~~~~~~~~lq~ei~~Lk~~ 364 (574)
T KOG4280|consen 319 NYEETLSTLRFAQRAKAIKNKPVINEDPKDALLRELQEEIERLKKE 364 (574)
T ss_pred hhHHHHHHHHHHHHHHHhhccccccCCcchhhHHHHHHHHHHHHHh
Confidence 99999999999999999999987755444 3455555554444443
No 3
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=3.2e-82 Score=763.41 Aligned_cols=356 Identities=38% Similarity=0.593 Sum_probs=308.5
Q ss_pred CCEEEEeecCCCCCcccCCCccEEE--EccCCEEEEeCCCCCCCCCceeeeeceeeCCCCChHHHHhc-hHHHHHHhhcC
Q 001464 494 GNIRVYCRIRPFLPGQSKKQTTIEY--IGENGELVVSNPLKQGKDNHRLFKFNKVFGPEASQEEVFLD-TRPLIRSVLDG 570 (1073)
Q Consensus 494 GnIRV~~RVRP~l~~e~~~~~~v~~--~~~~~~l~v~~p~~~~~~~~k~F~FD~VF~~~atQeeVf~~-~~pLV~svLdG 570 (1073)
-||+|+|||||++..|....+.+.+ .+...+|.|... ..++...++|+||+||||.+.|.+||.. +.|+|..|+.|
T Consensus 49 ~NIqVivRcRp~n~~E~~~~s~~VVs~~~~~kEV~v~~~-~~sk~~~k~ftFDkVFGpes~Q~d~Y~~~v~p~i~eVl~G 127 (1041)
T KOG0243|consen 49 VNIQVIVRCRPRNDRERKSKSSVVVSCDGIRKEVAVRQT-IASKQIDKTFTFDKVFGPESQQEDLYDQAVSPIIKEVLEG 127 (1041)
T ss_pred CceEEEEEeCCCCchhhhcCCCeEEecCCCcceEEEecc-cccccccceeecceeeCcchhHHHHHHHHHHHHHHHHhcc
Confidence 5999999999999888765544333 322345777654 2233357899999999999999999987 69999999999
Q ss_pred cceeEEeecccCCCCCeeeecCC----CCCCCccchhHHHHHHHHHHHHhccCCceEEEEEEEEEEecceeeeccCCCCC
Q 001464 571 YNVCIFAYGQTGSGKTYTMSGPC----ISSTEDWGVNYRALNDLFEISESRKNSILYEVGVQMVEIYNEQVRDLLSSDGP 646 (1073)
Q Consensus 571 yN~~IfAYGQTGSGKTyTM~G~~----~~~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~V~DLL~~~~~ 646 (1073)
||||||||||||+||||||+|.. +..+.+.||||||+.+||+.++.. +..|.|.|||+|+|||.|+|||++...
T Consensus 128 yNCTIFAYGQTGTGKTyTMeG~~~~~~g~l~~~aGIIPRal~~IFd~Le~~--~~EYsvKVSfLELYNEEl~DLLa~~~~ 205 (1041)
T KOG0243|consen 128 YNCTIFAYGQTGTGKTYTMEGGERKKNGELPSEAGIIPRALRQIFDTLEAQ--GAEYSVKVSFLELYNEELTDLLASEDT 205 (1041)
T ss_pred CCceEEEecCCCCCceeeeecCcccccCCCCccCCcchHHHHHHHHHHHhc--CCeEEEEEEehhhhhHHHHHhcCCccc
Confidence 99999999999999999999953 335678899999999999998864 378999999999999999999998765
Q ss_pred C-ccccccccc----CCCceecCCcEEEEecCHHHHHHHHHhhhcccccccCCCcCCCCCCccEEEEEEEeEecCC-C--
Q 001464 647 Q-RRLGIWNAT----LPNGLAVPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSILTIHVRGTDLKN-G-- 718 (1073)
Q Consensus 647 ~-~~l~i~~~~----~~g~~vv~~~~~~vvss~eev~~lL~~G~~nR~~~sT~~N~~SSRSH~IftI~V~~~~~~~-~-- 718 (1073)
. +.+.+..+. ..|++++.++.+.+|+++.|++.+|..|...|.+++|.||.+|||||+||+|+|....... |
T Consensus 206 ~~~~~~~k~~~~~~~~kggV~vkGlEEi~V~~A~ei~klLekGs~kRrtAaTl~N~~SSRSHsIFsItvhike~t~~gee 285 (1041)
T KOG0243|consen 206 SDKKLRIKDDSTIVDGKGGVIVKGLEEIIVTNADEIYKLLEKGSKKRRTAATLMNDQSSRSHSIFSITVHIKENTPEGEE 285 (1041)
T ss_pred cccccccccCCcccCCcCcEEEecceeeeecchhHHHHHHHhhhhHhHHHHHHhhhhccccceEEEEEEEEecCCCcchh
Confidence 4 555555444 4589999999999999999999999999999999999999999999999999996543322 2
Q ss_pred cEEEeeeEEEecCCCccccCCcchhhhHHHHHHHhhhHHHHHHHHHHHhcCCCCccCcCchhhhhhhhccCCCcceeeEE
Q 001464 719 AILRGSLHLIDLAGSERVDRSEATGDRLREAQHINKSLSALGDVIFALAHKNPHVPYRNSKLTQVLQSSLGGQAKTLMMV 798 (1073)
Q Consensus 719 ~~~~skL~LVDLAGSER~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~k~~hVPYRdSKLTrLLqdSLGGnsKTlmI~ 798 (1073)
-+..|+|+||||||||.++++|+.+.|.+|+..||+||.+||+||+||..+..|||||+|||||||||||||.+||+||+
T Consensus 286 lvK~GKLNLVDLAGSENI~RSGA~~~RArEAG~INqSLLTLGRVInALVe~s~HIPYRESKLTRLLQDSLGGkTKT~iIA 365 (1041)
T KOG0243|consen 286 LVKIGKLNLVDLAGSENISRSGARNGRAREAGEINQSLLTLGRVINALVEHSGHIPYRESKLTRLLQDSLGGKTKTCIIA 365 (1041)
T ss_pred hHhhcccceeeccccccccccccccchhHHhhhhhHHHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhCCCceeEEEE
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHhHhccccccccccCCCcch--HHHHHHHHHHHHHHHH
Q 001464 799 QLNPDVDSYSETISTLKFAERVSGVELGAARSNKEGSD--VRELMEQVGSLKDIIT 852 (1073)
Q Consensus 799 ~ISP~~~~~~ETlsTLrFA~Rak~I~~~~~k~~~~~~~--v~eL~~qv~~Lk~~i~ 852 (1073)
||||+..+++||++||.||.||++|+++|..+.+-... ++++..++..||..+.
T Consensus 366 TiSPa~~~lEETlSTLEYA~RAKnIkNKPevNQkl~K~~llKd~~~EIerLK~dl~ 421 (1041)
T KOG0243|consen 366 TISPAKHNLEETLSTLEYAHRAKNIKNKPEVNQKLMKKTLLKDLYEEIERLKRDLA 421 (1041)
T ss_pred EeCCCcccHHHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998776554333 5677777777776654
No 4
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=3.7e-81 Score=739.84 Aligned_cols=355 Identities=37% Similarity=0.572 Sum_probs=304.7
Q ss_pred CCEEEEeecCCCCCcccCCCccEEEEccCCEEEEeCCCCCCCCCceeeeeceeeCC-------CCChHHHHhc-hHHHHH
Q 001464 494 GNIRVYCRIRPFLPGQSKKQTTIEYIGENGELVVSNPLKQGKDNHRLFKFNKVFGP-------EASQEEVFLD-TRPLIR 565 (1073)
Q Consensus 494 GnIRV~~RVRP~l~~e~~~~~~v~~~~~~~~l~v~~p~~~~~~~~k~F~FD~VF~~-------~atQeeVf~~-~~pLV~ 565 (1073)
.+|.|.||||||+..|........+...+.++.|.+|.. .+ ....|+||+.|+. -++|..||++ +.++++
T Consensus 4 ssv~VAVRVRPfn~rE~s~~~k~Vvqm~gn~ttii~~~~-~k-~~~~FtfD~SYWS~d~edPhfAsQ~qVYedlg~~mL~ 81 (1221)
T KOG0245|consen 4 SSVKVAVRVRPFNAREKSRDAKCVVQMQGNTTTIINPKG-SK-DAPKFTFDYSYWSHDSEDPHFASQKQVYEDLGREMLD 81 (1221)
T ss_pred CceEEEEEeccchhhhhhcccceEEEecCCceeeecCCC-cc-cCCceecceeeecCCCCCCchhhHHHHHHHHhHHHHH
Confidence 479999999999998876544333333445566666642 22 2345999999964 3889999999 699999
Q ss_pred HhhcCcceeEEeecccCCCCCeeeecCCCCCCCccchhHHHHHHHHHHHHhc-cCCceEEEEEEEEEEecceeeeccCCC
Q 001464 566 SVLDGYNVCIFAYGQTGSGKTYTMSGPCISSTEDWGVNYRALNDLFEISESR-KNSILYEVGVQMVEIYNEQVRDLLSSD 644 (1073)
Q Consensus 566 svLdGyN~~IfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~~-~~~~~~~V~vS~lEIYnE~V~DLL~~~ 644 (1073)
.+++|||+||||||||||||||||+|.. .++++|||||+|++||..+... .....|.|.|||+|||||.|+|||+..
T Consensus 82 ~AfEGYN~ClFAYGQTGSGKSYTMMG~~--~~~e~GIIPrlCEeLF~ri~~nq~~~~sy~VevSymEIYcErVrDLL~~p 159 (1221)
T KOG0245|consen 82 HAFEGYNVCLFAYGQTGSGKSYTMMGFQ--EPDEPGIIPRLCEELFSRIADNQSQQMSYSVEVSYMEIYCERVRDLLNAP 159 (1221)
T ss_pred HHhcccceEEEEeccCCCCcceeeeccC--CCCCCCchhHHHHHHHHHHhhcccccceEEEEEeehhHHHHHHHHHhhCC
Confidence 9999999999999999999999999953 5689999999999999987653 456889999999999999999999954
Q ss_pred CCCcccccccccCCCceecCCcEEEEecCHHHHHHHHHhhhcccccccCCCcCCCCCCccEEEEEEEeEecCC--C--cE
Q 001464 645 GPQRRLGIWNATLPNGLAVPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSILTIHVRGTDLKN--G--AI 720 (1073)
Q Consensus 645 ~~~~~l~i~~~~~~g~~vv~~~~~~vvss~eev~~lL~~G~~nR~~~sT~~N~~SSRSH~IftI~V~~~~~~~--~--~~ 720 (1073)
.+...+.+++.+. .|++|.+++...|++..|+..+|..|++.|++++|+||+.|||||+||||.+.+..... + ..
T Consensus 160 ~~kg~LRVREHP~-lGPYVedLS~~aV~Sy~dI~~~md~GNkqRTtAATnMNdtSSRSHaVFtIvftQk~~~~~~~l~se 238 (1221)
T KOG0245|consen 160 KSKGGLRVREHPI-LGPYVEDLSKLAVTSYADIQDLMDEGNKQRTTAATNMNDTSSRSHAVFTIVFTQKKHDQDTGLDSE 238 (1221)
T ss_pred CCCCCceeeccCc-cChhHhHhhhcccccHHHHHHHHHhcchhhhhhhhccccccccceeEEEEEEEeeeccccCCCcce
Confidence 4445566665544 45667777888888899999999999999999999999999999999999999876543 3 56
Q ss_pred EEeeeEEEecCCCccccCCcchhhhHHHHHHHhhhHHHHHHHHHHHhcC-------CCCccCcCchhhhhhhhccCCCcc
Q 001464 721 LRGSLHLIDLAGSERVDRSEATGDRLREAQHINKSLSALGDVIFALAHK-------NPHVPYRNSKLTQVLQSSLGGQAK 793 (1073)
Q Consensus 721 ~~skL~LVDLAGSER~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~k-------~~hVPYRdSKLTrLLqdSLGGnsK 793 (1073)
.+|+|+|||||||||++.+++.|+|||||.+|||||.+||+||+||++. ..+||||||.|||||+++||||||
T Consensus 239 k~SKIsLVDLAGSERasstGa~G~RLKEGa~INKSLtTLGkVISALAe~~~~k~~ks~fIPYRDSVLTWLLkEnLGGNSK 318 (1221)
T KOG0245|consen 239 KVSKISLVDLAGSERASSTGANGDRLKEGANINKSLTTLGKVISALAESQKGKKKKSDFIPYRDSVLTWLLKENLGGNSK 318 (1221)
T ss_pred eeeeeeEEeccCcccccccCCCccchhcccccchHHHHHHHHHHHHHHHhccCCCCCccccchHHHHHHHHHHhcCCcch
Confidence 7899999999999999999999999999999999999999999999853 348999999999999999999999
Q ss_pred eeeEEecCCCCCCHHHHHHHHHHHhHhccccccccccCC-CcchHHHHHHHHHHHHHHHHH
Q 001464 794 TLMMVQLNPDVDSYSETISTLKFAERVSGVELGAARSNK-EGSDVRELMEQVGSLKDIITK 853 (1073)
Q Consensus 794 TlmI~~ISP~~~~~~ETlsTLrFA~Rak~I~~~~~k~~~-~~~~v~eL~~qv~~Lk~~i~~ 853 (1073)
|+||++|||++.||+|||+|||||.|||.|.++++.+.. ..+-+|+|++||..||..+..
T Consensus 319 TaMIAAlSPAdiNyeETLSTLRYAdRAK~Iv~~avVNEdpnaKLIRELreEv~rLksll~~ 379 (1221)
T KOG0245|consen 319 TAMIAALSPADINYEETLSTLRYADRAKQIVNNAVVNEDPNAKLIRELREEVARLKSLLRA 379 (1221)
T ss_pred hhhhhccChhhcChHHHHHHHHHhhHhhhhhccceeCCCccHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999998876543 345689999999999988754
No 5
>PLN03188 kinesin-12 family protein; Provisional
Probab=100.00 E-value=7.4e-78 Score=730.72 Aligned_cols=361 Identities=37% Similarity=0.595 Sum_probs=301.4
Q ss_pred hhhhhhhhhhc----cCCEEEEeecCCCCCcccCCCccEEEEccCCEEEEeCCCCCCCCCceeeeeceeeCCCCChHHHH
Q 001464 482 NRRLYNEVQDL----KGNIRVYCRIRPFLPGQSKKQTTIEYIGENGELVVSNPLKQGKDNHRLFKFNKVFGPEASQEEVF 557 (1073)
Q Consensus 482 rRkL~N~vqeL----KGnIRV~~RVRP~l~~e~~~~~~v~~~~~~~~l~v~~p~~~~~~~~k~F~FD~VF~~~atQeeVf 557 (1073)
+|+|..+...- .++|+|||||||+.+.+.. ...+... .++.+.+. .+.|.||+||+++++|++||
T Consensus 82 ~rk~~~~~~~en~~~ds~VkV~VRVRPl~~~E~g-~~iV~~~-s~dsl~I~---------~qtFtFD~VFdp~aTQedVF 150 (1320)
T PLN03188 82 KRKLSAETAPENGVSDSGVKVIVRMKPLNKGEEG-EMIVQKM-SNDSLTIN---------GQTFTFDSIADPESTQEDIF 150 (1320)
T ss_pred hccccccccccccCCCCCeEEEEEcCCCCCccCC-CeeEEEc-CCCeEEEe---------CcEEeCCeeeCCCCCHHHHH
Confidence 35666544333 5799999999999887532 2233333 34455542 25799999999999999999
Q ss_pred hc-hHHHHHHhhcCcceeEEeecccCCCCCeeeecCCCC------CCCccchhHHHHHHHHHHHHhc-----cCCceEEE
Q 001464 558 LD-TRPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPCIS------STEDWGVNYRALNDLFEISESR-----KNSILYEV 625 (1073)
Q Consensus 558 ~~-~~pLV~svLdGyN~~IfAYGQTGSGKTyTM~G~~~~------~~~~~GIipRal~~LF~~~~~~-----~~~~~~~V 625 (1073)
.. +.|+|+++|+|||+||||||||||||||||+|+... ...++|||||++++||..+... ...+.|.|
T Consensus 151 e~vv~PLV~svLdGyNaTIFAYGQTGSGKTYTM~G~~~~~~de~~s~~e~GIIPRaledLF~~I~e~q~k~~d~~~~y~V 230 (1320)
T PLN03188 151 QLVGAPLVENCLAGFNSSVFAYGQTGSGKTYTMWGPANGLLEEHLSGDQQGLTPRVFERLFARINEEQIKHADRQLKYQC 230 (1320)
T ss_pred HHHHHHHHHHHhcCCcceeecCCCCCCCCCEeeCCCCCcccccccccccCCchHHHHHHHHHHHHhhhhhccccccceEE
Confidence 98 589999999999999999999999999999997432 3467899999999999987642 23568999
Q ss_pred EEEEEEEecceeeeccCCCCCCcccccccccCCCceecCCcEEEEecCHHHHHHHHHhhhcccccccCCCcCCCCCCccE
Q 001464 626 GVQMVEIYNEQVRDLLSSDGPQRRLGIWNATLPNGLAVPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSI 705 (1073)
Q Consensus 626 ~vS~lEIYnE~V~DLL~~~~~~~~l~i~~~~~~g~~vv~~~~~~vvss~eev~~lL~~G~~nR~~~sT~~N~~SSRSH~I 705 (1073)
+|||+|||||+|+|||++.. +.+.++.+. .+++++.++++..|.+++|++.+|..|..+|++++|.+|..|||||+|
T Consensus 231 ~vSyLEIYNEkI~DLLsp~~--k~L~IRED~-kgGv~VeGLTEv~V~S~ED~l~LL~~G~~nR~tasT~mN~~SSRSHaI 307 (1320)
T PLN03188 231 RCSFLEIYNEQITDLLDPSQ--KNLQIREDV-KSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSV 307 (1320)
T ss_pred EEEEEeeecCcceecccccc--CCceEEEcC-CCCeEeCCCeEEeCCCHHHHHHHHHHHhccceeccCCCCCccCCCcee
Confidence 99999999999999998754 345555443 466888999999999999999999999999999999999999999999
Q ss_pred EEEEEEeEecC--C--CcEEEeeeEEEecCCCccccCCcchhhhHHHHHHHhhhHHHHHHHHHHHhc-----CCCCccCc
Q 001464 706 LTIHVRGTDLK--N--GAILRGSLHLIDLAGSERVDRSEATGDRLREAQHINKSLSALGDVIFALAH-----KNPHVPYR 776 (1073)
Q Consensus 706 ftI~V~~~~~~--~--~~~~~skL~LVDLAGSER~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~-----k~~hVPYR 776 (1073)
|+|+|...... . .....|+|+|||||||||+.++++.|.+++|+.+||+||++||+||.+|+. +..|||||
T Consensus 308 FtI~Ves~~k~~~dg~ss~r~SkLnLVDLAGSER~kkTga~G~RLkEA~~INKSLsaLGnVI~ALae~Sq~gk~~HIPYR 387 (1320)
T PLN03188 308 FTCVVESRCKSVADGLSSFKTSRINLVDLAGSERQKLTGAAGDRLKEAGNINRSLSQLGNLINILAEISQTGKQRHIPYR 387 (1320)
T ss_pred EEEEEEEeecccCCCCcceEEEEEEEEECCCchhccccCcccHHHHHHHHHhHHHHHHHHHHHHHHHhhccCCCCcCCCC
Confidence 99999865432 2 235679999999999999999999999999999999999999999999985 45799999
Q ss_pred CchhhhhhhhccCCCcceeeEEecCCCCCCHHHHHHHHHHHhHhccccccccccCCCcchHHHHHHHHHHHHHHHHHHHH
Q 001464 777 NSKLTQVLQSSLGGQAKTLMMVQLNPDVDSYSETISTLKFAERVSGVELGAARSNKEGSDVRELMEQVGSLKDIITKKDE 856 (1073)
Q Consensus 777 dSKLTrLLqdSLGGnsKTlmI~~ISP~~~~~~ETlsTLrFA~Rak~I~~~~~k~~~~~~~v~eL~~qv~~Lk~~i~~~~e 856 (1073)
+||||+||||+|||||+|+|||||||...+++||++||+||+||+.|++.+..+..... .+..|+..|.++++
T Consensus 388 DSKLTrLLQDSLGGNSKTvMIa~VSPs~~~~eETLSTLrFAsRAK~IKNkpvvNe~~~~-------~vn~LrelIr~Lk~ 460 (1320)
T PLN03188 388 DSRLTFLLQESLGGNAKLAMVCAISPSQSCKSETFSTLRFAQRAKAIKNKAVVNEVMQD-------DVNFLREVIRQLRD 460 (1320)
T ss_pred cchHHHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHHHHHHHhhcCccceeccchhh-------hHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998866543332 34455566666666
Q ss_pred HHHHHHH
Q 001464 857 EIERLQV 863 (1073)
Q Consensus 857 eie~Lq~ 863 (1073)
|+.+|+.
T Consensus 461 EL~rLK~ 467 (1320)
T PLN03188 461 ELQRVKA 467 (1320)
T ss_pred HHHHHHH
Confidence 6666653
No 6
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=100.00 E-value=3.6e-77 Score=674.30 Aligned_cols=320 Identities=40% Similarity=0.664 Sum_probs=285.2
Q ss_pred CEEEEeecCCCCCcccCC--CccEEEEccCCEEEEeCCCCC---------CCCCceeeeeceeeCCCCChHHHHhc-hHH
Q 001464 495 NIRVYCRIRPFLPGQSKK--QTTIEYIGENGELVVSNPLKQ---------GKDNHRLFKFNKVFGPEASQEEVFLD-TRP 562 (1073)
Q Consensus 495 nIRV~~RVRP~l~~e~~~--~~~v~~~~~~~~l~v~~p~~~---------~~~~~k~F~FD~VF~~~atQeeVf~~-~~p 562 (1073)
+|+|||||||+.+.|... ..++.+. ++ .+++.+|... .....+.|.||+||+++++|++||+. +.|
T Consensus 1 ~i~V~vRvRP~~~~E~~~~~~~~v~~~-~~-~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~~q~~vf~~~~~p 78 (338)
T cd01370 1 SLTVAVRVRPFNEKEKQEGTRRVVKVV-DD-RMLVFDPKDEEDAFRNLRARRNKELKYSFDRVFDETSTQEEVYENTTKP 78 (338)
T ss_pred CeEEEEEcCCCChhhhhcCCceEEEEc-CC-CEEEEcCCcccccccchhcccCCceEEEeccccCCCCCHHHHHHHHHHH
Confidence 699999999999877433 2334443 33 4445555432 12346789999999999999999998 589
Q ss_pred HHHHhhcCcceeEEeecccCCCCCeeeecCCCCCCCccchhHHHHHHHHHHHHhccCCceEEEEEEEEEEecceeeeccC
Q 001464 563 LIRSVLDGYNVCIFAYGQTGSGKTYTMSGPCISSTEDWGVNYRALNDLFEISESRKNSILYEVGVQMVEIYNEQVRDLLS 642 (1073)
Q Consensus 563 LV~svLdGyN~~IfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~V~DLL~ 642 (1073)
+|+++++|||+||||||||||||||||+|+ ..++|||||++++||+.++...+.+.|.|++||+|||||+|+|||+
T Consensus 79 lv~~~~~G~n~~i~ayGqtGSGKTyTm~G~----~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIyne~v~DLL~ 154 (338)
T cd01370 79 LVDGVLNGYNATVFAYGATGAGKTHTMLGT----DSDPGLMVLTMKDLFDKIEERKDDKEFEVSLSYLEIYNETIRDLLS 154 (338)
T ss_pred HHHHHHCCCCceEEeeCCCCCCCeEEEcCC----CCCCchHHHHHHHHHHhhhhcccCceEEEEEEEEEEECCEEEECCC
Confidence 999999999999999999999999999995 3789999999999999998887789999999999999999999998
Q ss_pred CCCCCcccccccccCCCceecCCcEEEEecCHHHHHHHHHhhhcccccccCCCcCCCCCCccEEEEEEEeEecC---CCc
Q 001464 643 SDGPQRRLGIWNATLPNGLAVPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSILTIHVRGTDLK---NGA 719 (1073)
Q Consensus 643 ~~~~~~~l~i~~~~~~g~~vv~~~~~~vvss~eev~~lL~~G~~nR~~~sT~~N~~SSRSH~IftI~V~~~~~~---~~~ 719 (1073)
+.. ..+.++.+. .+++++.++++..+.+++|++.+|..|.++|++++|.+|..|||||+||+|+|.+.+.. ...
T Consensus 155 ~~~--~~l~i~ed~-~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~i~~~~~~~~~~~~ 231 (338)
T cd01370 155 PSS--GPLELREDP-NQGIVVAGLTEHQPKSAEEILELLMKGNRNRTQEPTEANATSSRSHAVLQITVRQKDRTASINQQ 231 (338)
T ss_pred CCC--CCceEEEcC-CCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccccccCccCcceEEEEEEEEEEecCCCCCCc
Confidence 752 345555443 47788899999999999999999999999999999999999999999999999988775 456
Q ss_pred EEEeeeEEEecCCCccccCCcchhhhHHHHHHHhhhHHHHHHHHHHHhcCC---CCccCcCchhhhhhhhccCCCcceee
Q 001464 720 ILRGSLHLIDLAGSERVDRSEATGDRLREAQHINKSLSALGDVIFALAHKN---PHVPYRNSKLTQVLQSSLGGQAKTLM 796 (1073)
Q Consensus 720 ~~~skL~LVDLAGSER~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~k~---~hVPYRdSKLTrLLqdSLGGnsKTlm 796 (1073)
...|+|+|||||||||..+++..|.+++|+.+||+||.+|++||.+|+.++ .|||||+||||+||||+|||||+|+|
T Consensus 232 ~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~~L~~~~~~~~~ipyR~SkLT~lL~d~Lggn~~t~~ 311 (338)
T cd01370 232 VRIGKLSLIDLAGSERASATNNRGQRLKEGANINRSLLALGNCINALVDGKKKNKHIPYRDSKLTRLLKDSLGGNCKTVM 311 (338)
T ss_pred EEEEEEEEEECCCCccccccCCCCccccccchhhHHHHHHHHHHHHHHhccCCCCcCCCcCCHHHHHHHHhcCCCCeEEE
Confidence 788999999999999999999999999999999999999999999999887 89999999999999999999999999
Q ss_pred EEecCCCCCCHHHHHHHHHHHhHhccc
Q 001464 797 MVQLNPDVDSYSETISTLKFAERVSGV 823 (1073)
Q Consensus 797 I~~ISP~~~~~~ETlsTLrFA~Rak~I 823 (1073)
|+||||+..+++||++||+||+||++|
T Consensus 312 I~~vsp~~~~~~eTl~TL~fa~ra~~I 338 (338)
T cd01370 312 IANISPSSSHYEETHNTLKYANRAKNI 338 (338)
T ss_pred EEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 999999999999999999999999976
No 7
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=100.00 E-value=5.4e-76 Score=664.49 Aligned_cols=320 Identities=41% Similarity=0.615 Sum_probs=276.7
Q ss_pred CCEEEEeecCCCCCcccCCC--ccEEEEccCCEEEEeCCCCCCCCCceeeeeceeeCCCCChHHHHhc-hHHHHHHhhcC
Q 001464 494 GNIRVYCRIRPFLPGQSKKQ--TTIEYIGENGELVVSNPLKQGKDNHRLFKFNKVFGPEASQEEVFLD-TRPLIRSVLDG 570 (1073)
Q Consensus 494 GnIRV~~RVRP~l~~e~~~~--~~v~~~~~~~~l~v~~p~~~~~~~~k~F~FD~VF~~~atQeeVf~~-~~pLV~svLdG 570 (1073)
.+|||||||||+.+.|.... .++... .++.+++... ..+.|.||+||+++++|++||+. +.|+|+++++|
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~v~~~-~~~~~~~~~~------~~~~f~FD~vf~~~~~q~~vy~~~~~p~v~~~~~G 73 (337)
T cd01373 1 PAVKVVVRIRPPNEIEADGGQGQCLKKL-SSDTLVWHSH------PPRMFTFDHVADSNTNQEDVFQSVGKPLVEDCLSG 73 (337)
T ss_pred CCeEEEEEcCcCChhhcccCCCeEEEEc-CCCcEEeeCC------CCcEEeCCeEeCCCCCHHHHHHHHHHHHHHHHhCC
Confidence 48999999999998775432 223322 3334443321 14689999999999999999998 59999999999
Q ss_pred cceeEEeecccCCCCCeeeecCCCC----CCCccchhHHHHHHHHHHHHhc----cCCceEEEEEEEEEEecceeeeccC
Q 001464 571 YNVCIFAYGQTGSGKTYTMSGPCIS----STEDWGVNYRALNDLFEISESR----KNSILYEVGVQMVEIYNEQVRDLLS 642 (1073)
Q Consensus 571 yN~~IfAYGQTGSGKTyTM~G~~~~----~~~~~GIipRal~~LF~~~~~~----~~~~~~~V~vS~lEIYnE~V~DLL~ 642 (1073)
||+||||||||||||||||+|+... ...++||+||++++||..++.. .....|.|.+||+|||||+|+|||+
T Consensus 74 ~n~ti~aYGqTGSGKTyTm~G~~~~~~~~~~~~~Giipr~~~~Lf~~i~~~~~~~~~~~~~~v~~S~~EIyne~v~DLL~ 153 (337)
T cd01373 74 YNGSIFAYGQTGSGKTYTMMGPSSSDDESPHGLQGVIPRIFEYLFSLIQREEEKRGDGLKFLCKCSFLEIYNEQITDLLD 153 (337)
T ss_pred CceeEEEeCCCCCCceEEecCCCCccccccccCCCHHHHHHHHHHHHHHhhhhhcccCceEEEEEEEEeecCCEeeeCCC
Confidence 9999999999999999999997532 2357899999999999977543 2457899999999999999999998
Q ss_pred CCCCCcccccccccCCCceecCCcEEEEecCHHHHHHHHHhhhcccccccCCCcCCCCCCccEEEEEEEeEecCCC--cE
Q 001464 643 SDGPQRRLGIWNATLPNGLAVPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSILTIHVRGTDLKNG--AI 720 (1073)
Q Consensus 643 ~~~~~~~l~i~~~~~~g~~vv~~~~~~vvss~eev~~lL~~G~~nR~~~sT~~N~~SSRSH~IftI~V~~~~~~~~--~~ 720 (1073)
+... .+.++.+ ..+++++.++++..+.+++|+++++..|.++|++++|.+|..|||||+||+|+|...+...+ ..
T Consensus 154 ~~~~--~l~i~e~-~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~~~~~ 230 (337)
T cd01373 154 PTSR--NLKIRED-IKKGVYVENLTEEYVSSYEDVYQVLLKGLSNRKVAATSMNSESSRSHAVFTCTIESWEKKASSTNI 230 (337)
T ss_pred CCCC--CceEEEC-CCCCEEeCCCEEEEeCCHHHHHHHHHHHHhccCcccCcCCCCCCCccEEEEEEEEEeecCCCCCcE
Confidence 7543 3455443 34668889999999999999999999999999999999999999999999999987665443 35
Q ss_pred EEeeeEEEecCCCccccCCcchhhhHHHHHHHhhhHHHHHHHHHHHhc----CCCCccCcCchhhhhhhhccCCCcceee
Q 001464 721 LRGSLHLIDLAGSERVDRSEATGDRLREAQHINKSLSALGDVIFALAH----KNPHVPYRNSKLTQVLQSSLGGQAKTLM 796 (1073)
Q Consensus 721 ~~skL~LVDLAGSER~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~----k~~hVPYRdSKLTrLLqdSLGGnsKTlm 796 (1073)
..|+|+|||||||||..++++.|.+++|+.+||+||++|++||.+|++ +..|||||+||||+||||+|||||+|+|
T Consensus 231 ~~s~l~~VDLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~aL~~~~~~~~~~ipyR~SkLT~lL~dsLggns~t~~ 310 (337)
T cd01373 231 RTSRLNLVDLAGSERQKDDGAEGVRLKEAKNINKSLSTLGHVIMALVDVAHGKQRHVPYRDSKLTFLLRDSLGGNAKTTI 310 (337)
T ss_pred EEEEEEEEECCCCCcccccCCccHhhhhhccccHHHHHHHHHHHHHHhhccCCCCccCCcccHHHHHHHHhcCCCceEEE
Confidence 679999999999999999999999999999999999999999999984 4689999999999999999999999999
Q ss_pred EEecCCCCCCHHHHHHHHHHHhHhccc
Q 001464 797 MVQLNPDVDSYSETISTLKFAERVSGV 823 (1073)
Q Consensus 797 I~~ISP~~~~~~ETlsTLrFA~Rak~I 823 (1073)
||||||+..+++||++||+||+||+.|
T Consensus 311 I~~vsP~~~~~~eTl~TL~fa~rak~I 337 (337)
T cd01373 311 IANVSPSSKCFGETLSTLKFAQRAKLI 337 (337)
T ss_pred EEEECCCcccHHHHHHHHHHHHHhhcC
Confidence 999999999999999999999999876
No 8
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=100.00 E-value=4.6e-77 Score=677.95 Aligned_cols=327 Identities=40% Similarity=0.627 Sum_probs=291.8
Q ss_pred cCCEEEEeecCCCCCcccCCCcc-EEEE-ccCCEEEEeCCCCCCCCCceeeeeceeeCCCCChHHHHhc-hHHHHHHhhc
Q 001464 493 KGNIRVYCRIRPFLPGQSKKQTT-IEYI-GENGELVVSNPLKQGKDNHRLFKFNKVFGPEASQEEVFLD-TRPLIRSVLD 569 (1073)
Q Consensus 493 KGnIRV~~RVRP~l~~e~~~~~~-v~~~-~~~~~l~v~~p~~~~~~~~k~F~FD~VF~~~atQeeVf~~-~~pLV~svLd 569 (1073)
-++|+|+||+||....|...... +... +....+++.. ++.. ++|.||+||.|+++|++||.. +.|+|++||.
T Consensus 6 ~~~IkV~cR~rP~n~~E~~~~~~~i~~~~~~~~~v~~~~----~~~~-~~y~FDrVF~pnatQe~Vy~~~a~~Iv~dVL~ 80 (607)
T KOG0240|consen 6 ECSIKVVCRFRPLNGLENNLGSKFIDCFENGENTVVLET----TKET-KTYVFDRVFSPNATQEDVYEFAAKPIVDDVLL 80 (607)
T ss_pred CCceEEEEEeecCCchhhhcCCcCccCCCCCcceEEEec----cccc-ccceeeeecCCCccHHHHHHHHHHHHHHHHhc
Confidence 48999999999998766433222 2222 2133444432 2233 789999999999999999998 6999999999
Q ss_pred CcceeEEeecccCCCCCeeeecCCCCCCCccchhHHHHHHHHHHHHhccCCceEEEEEEEEEEecceeeeccCCCCCCcc
Q 001464 570 GYNVCIFAYGQTGSGKTYTMSGPCISSTEDWGVNYRALNDLFEISESRKNSILYEVGVQMVEIYNEQVRDLLSSDGPQRR 649 (1073)
Q Consensus 570 GyN~~IfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~V~DLL~~~~~~~~ 649 (1073)
|||+||||||||||||||||.|... ++...||+||++++||..+........|.|+|||+|||+|+|+|||++... .
T Consensus 81 GYNGTvfaYGqT~sGKTytm~G~~~-d~~~~GIipRi~~diF~~Iys~~~n~efhVkVsy~EIYmEKi~DLL~~~k~--n 157 (607)
T KOG0240|consen 81 GYNGTVFAYGQTGSGKTYTMEGIGH-DPEEMGIIPRILNDIFDHIYSMEENLEFHVKVSYFEIYMEKIRDLLDPEKT--N 157 (607)
T ss_pred ccceeEEEecCCCCCcceeecccCC-ChhhcCcHHHHHHHHHHHHhcCcccceEEEEEEeehhhhhHHHHHhCcccC--C
Confidence 9999999999999999999999643 556779999999999999999888899999999999999999999997543 3
Q ss_pred cccccccCCCceecCCcEEEEecCHHHHHHHHHhhhcccccccCCCcCCCCCCccEEEEEEEeEecCCCcEEEeeeEEEe
Q 001464 650 LGIWNATLPNGLAVPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSILTIHVRGTDLKNGAILRGSLHLID 729 (1073)
Q Consensus 650 l~i~~~~~~g~~vv~~~~~~vvss~eev~~lL~~G~~nR~~~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~~skL~LVD 729 (1073)
+.+..+ ...++++.+++...|.++++++++++.|..+|+++.|.||.+|||||+||+|+|.+.+.++.....|+|.|||
T Consensus 158 lsvheD-K~~v~~vkG~t~~~v~s~d~v~~~i~~g~~nr~va~t~mn~~sSRSHsIF~i~VkQ~n~e~~~~~~gkLyLVD 236 (607)
T KOG0240|consen 158 LSVHED-KNRVPYVKGVTERFVSSPDEVLDVIDEGKSNRHVAVTNMNEHSSRSHSIFLIHVKQENVEDKRKLSGKLYLVD 236 (607)
T ss_pred ceeecc-cCCCceecCceeEEecCHHHHHHHHhcccccchhhhccccccccccceEEEEEEEeccccchhhccccEEEEE
Confidence 444444 6678899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccccCCcchhhhHHHHHHHhhhHHHHHHHHHHHhcC-CCCccCcCchhhhhhhhccCCCcceeeEEecCCCCCCHH
Q 001464 730 LAGSERVDRSEATGDRLREAQHINKSLSALGDVIFALAHK-NPHVPYRNSKLTQVLQSSLGGQAKTLMMVQLNPDVDSYS 808 (1073)
Q Consensus 730 LAGSER~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~k-~~hVPYRdSKLTrLLqdSLGGnsKTlmI~~ISP~~~~~~ 808 (1073)
|||||+++++++.|.-+.|+.+||+||+|||+||+||+.+ ..|||||||||||+|||||||||+|.+|+|++|+..+..
T Consensus 237 LaGSEkvsKtga~g~vleEaK~INkSLsaLgnvI~aLa~g~~shipYRDSKLTRILqdSLGGNsRTtlIi~csPss~n~~ 316 (607)
T KOG0240|consen 237 LAGSEKVSKTGAEGAVLEEAKNINKSLSALGNVINALAEGPKSHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSLNEA 316 (607)
T ss_pred cccccccCCCCccchhHHHHhhhhhhHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhCCCcceEEEEecCCcccccc
Confidence 9999999999999999999999999999999999999988 789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHhcccccccc
Q 001464 809 ETISTLKFAERVSGVELGAA 828 (1073)
Q Consensus 809 ETlsTLrFA~Rak~I~~~~~ 828 (1073)
||.+||+|+.||+.|++.+.
T Consensus 317 ET~STl~fg~rak~ikN~v~ 336 (607)
T KOG0240|consen 317 ETKSTLRFGNRAKTIKNTVW 336 (607)
T ss_pred ccccchhhccccccccchhh
Confidence 99999999999999986543
No 9
>KOG0242 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=5.9e-76 Score=707.88 Aligned_cols=351 Identities=40% Similarity=0.611 Sum_probs=295.0
Q ss_pred CCEEEEeecCCCCCcccCCCccEEEEc-cCCEEEEeC-CCCCCCCCceeeeeceeeCCCCChHHHHhc-hHHHHHHhhcC
Q 001464 494 GNIRVYCRIRPFLPGQSKKQTTIEYIG-ENGELVVSN-PLKQGKDNHRLFKFNKVFGPEASQEEVFLD-TRPLIRSVLDG 570 (1073)
Q Consensus 494 GnIRV~~RVRP~l~~e~~~~~~v~~~~-~~~~l~v~~-p~~~~~~~~k~F~FD~VF~~~atQeeVf~~-~~pLV~svLdG 570 (1073)
.+|.|+|||||+.+.+........+.. .+..+.... +..........|.||+||+++++|++||+. ++|+|.+||.|
T Consensus 6 ~~i~V~vrvRP~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~y~FD~VF~~~~t~~~VYe~~tkpiv~~~l~G 85 (675)
T KOG0242|consen 6 EKILVSVRVRPLNEREDARGDRSDWHCINDTTLFKRVTKSLPEKSKPEKYEFDRVFGEESTQEDVYERTTKPLLLSVLEG 85 (675)
T ss_pred ceeEEEEEeCCCCccccccCCccceEecCCceeEeeccccccccccccceeeeeecCCCCCHHHHHHhccHHHHHHHhcC
Confidence 589999999999987433232222222 233322221 111111114789999999999999999998 79999999999
Q ss_pred cceeEEeecccCCCCCeeeecCCCCCCCccchhHHHHHHHHHHHHhccCCceEEEEEEEEEEecceeeeccCCCCCCccc
Q 001464 571 YNVCIFAYGQTGSGKTYTMSGPCISSTEDWGVNYRALNDLFEISESRKNSILYEVGVQMVEIYNEQVRDLLSSDGPQRRL 650 (1073)
Q Consensus 571 yN~~IfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~V~DLL~~~~~~~~l 650 (1073)
||++|||||||||||||||.| ...+|||||+|+.+||+.+.... ...|.|.|||+|||||.|+|||+++++. +
T Consensus 86 ~N~TVFAYG~TgSGKTyTM~G----~~~~PGii~la~~dif~~I~~~~-~r~f~v~vSYlEIYNE~I~DLL~~~~~~--L 158 (675)
T KOG0242|consen 86 FNATVFAYGQTGSGKTYTMSG----SEDDPGIIPLAMKDIFEKIDKSG-EREFSVRVSYLEIYNERIRDLLNPDGGD--L 158 (675)
T ss_pred cccceeeecCCCCCCceEEec----cCCCCCeeehHHHHHHHHHHhcC-CceeEEEEEEEEEeccccccccCCCCCC--c
Confidence 999999999999999999999 56789999999999999998766 7889999999999999999999988754 4
Q ss_pred ccccccCCCceecCCcEEEEecCHHHHHHHHHhhhcccccccCCCcCCCCCCccEEEEEEEeEecCCCcEEEeeeEEEec
Q 001464 651 GIWNATLPNGLAVPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSILTIHVRGTDLKNGAILRGSLHLIDL 730 (1073)
Q Consensus 651 ~i~~~~~~g~~vv~~~~~~vvss~eev~~lL~~G~~nR~~~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~~skL~LVDL 730 (1073)
.++.+ ..+++++.+++..++.++++++.+|..|.++|+++.|.+|..|||||+||+|.|.......+. ..++|+||||
T Consensus 159 ~irED-~~~gi~V~gL~e~~v~s~e~~~~ll~~g~~~R~~g~T~~N~~SSRSHaIl~i~i~s~~~~~~~-~~s~L~lIDL 236 (675)
T KOG0242|consen 159 RLRED-SEGGIVVPGLTEETVSSREELLELLQKGNKNRTTGETNLNEQSSRSHAILRITVESRGREASS-RVSKLNLIDL 236 (675)
T ss_pred eEeEc-CCCCEEecCCeeecCCCHHHHHHHHHHhhccCcccccccccccchhhheeeEEEEeccccccc-hhheehhhhh
Confidence 55544 455889999999999999999999999999999999999999999999999999887655443 6789999999
Q ss_pred CCCccccCCcchhhhHHHHHHHhhhHHHHHHHHHHHhcC--CCCccCcCchhhhhhhhccCCCcceeeEEecCCCCCCHH
Q 001464 731 AGSERVDRSEATGDRLREAQHINKSLSALGDVIFALAHK--NPHVPYRNSKLTQVLQSSLGGQAKTLMMVQLNPDVDSYS 808 (1073)
Q Consensus 731 AGSER~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~k--~~hVPYRdSKLTrLLqdSLGGnsKTlmI~~ISP~~~~~~ 808 (1073)
|||||+.++++.|.|++||.+||+||.+||+||.+|+.+ ..||||||||||||||++|||||+|+|||||+|+..+|+
T Consensus 237 AGSERas~T~~~G~RlkEG~~INrSLlaLgtVI~~Ls~~~~~~hipYRDSKLTRiLq~sLgGn~rt~~I~tisp~~~~~~ 316 (675)
T KOG0242|consen 237 AGSERASRTGNEGVRLKEGAHINRSLLALGTVINKLSEGKRPRHIPYRDSKLTRLLQDSLGGNARTAIIATISPSSSHYE 316 (675)
T ss_pred hhhhhhhhhhccceeccccchhhHHHHHHHHHHHHHccccccCCCCccccHHHHhchhhcCCCccEEEEEEeCchhhHHH
Confidence 999999999999999999999999999999999999976 568999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHhccccccccccCC--CcchHHHHHHHHHHHHHHHHH
Q 001464 809 ETISTLKFAERVSGVELGAARSNK--EGSDVRELMEQVGSLKDIITK 853 (1073)
Q Consensus 809 ETlsTLrFA~Rak~I~~~~~k~~~--~~~~v~eL~~qv~~Lk~~i~~ 853 (1073)
||.+||+||+|++.|.+.+..+.. +...+..++.++..|+..+..
T Consensus 317 eT~nTL~fAsrak~i~~~~~~n~~~~~~~~~~~~~~~i~~l~~e~~~ 363 (675)
T KOG0242|consen 317 ETKNTLKFASRAKEITTKAQVNVILSDKALLKYLQREIAELEAELER 363 (675)
T ss_pred HHHHHHHHHHHhhhcccccccceecchhhhhHHHHHHHHHHHHHHHh
Confidence 999999999999999988765422 222333344555555555544
No 10
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=100.00 E-value=2e-74 Score=653.57 Aligned_cols=316 Identities=38% Similarity=0.584 Sum_probs=279.1
Q ss_pred CCEEEEeecCCCCCcccC--CCccEEEEccCCEEEEeCCCCC--------CCCCceeeeeceeeCCCCChHHHHhc-hHH
Q 001464 494 GNIRVYCRIRPFLPGQSK--KQTTIEYIGENGELVVSNPLKQ--------GKDNHRLFKFNKVFGPEASQEEVFLD-TRP 562 (1073)
Q Consensus 494 GnIRV~~RVRP~l~~e~~--~~~~v~~~~~~~~l~v~~p~~~--------~~~~~k~F~FD~VF~~~atQeeVf~~-~~p 562 (1073)
.+|+|||||||+.+.|.. ...++.+ .+++.+.+..|... +....+.|.||+||+++++|++||+. +.|
T Consensus 1 ~~i~V~vRvRP~~~~E~~~~~~~~v~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~tq~~vy~~~~~p 79 (345)
T cd01368 1 DPVKVYLRVRPLSKDELESEDEGCIEV-INSTTIQLHPPKGSAARKSERNGGQKETKFSFSKVFGPNTTQKEFFEGTALP 79 (345)
T ss_pred CCEEEEEEeCcCCchhhccCCCceEEE-cCCCEEEEeCCccccccccccccCCCceEeecCeEECCCCCHHHHHHHHHHH
Confidence 379999999999987653 2344444 35667777666431 22356789999999999999999998 589
Q ss_pred HHHHhhcCcceeEEeecccCCCCCeeeecCCCCCCCccchhHHHHHHHHHHHHhccCCceEEEEEEEEEEecceeeeccC
Q 001464 563 LIRSVLDGYNVCIFAYGQTGSGKTYTMSGPCISSTEDWGVNYRALNDLFEISESRKNSILYEVGVQMVEIYNEQVRDLLS 642 (1073)
Q Consensus 563 LV~svLdGyN~~IfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~V~DLL~ 642 (1073)
+|+++++|||+||||||||||||||||+|+ ..++|||||++++||+.+.. |.|.|||+|||||+|+|||+
T Consensus 80 ~v~~~l~G~n~ti~aYGqtGSGKTyTm~G~----~~~~Gli~r~~~~lF~~~~~------~~v~~S~~EIyne~v~DLL~ 149 (345)
T cd01368 80 LVQDLLKGKNSLLFTYGVTNSGKTYTMQGS----PGDGGILPRSLDVIFNSIGG------YSVFVSYVEIYNNYIYDLLE 149 (345)
T ss_pred HHHHHhCCCceEEEEeCCCCCCCeEEecCC----CCCCchHHHHHHHHHHHHHh------eeEEEEEEEEeCCEeEeCCC
Confidence 999999999999999999999999999995 47899999999999998865 89999999999999999998
Q ss_pred CCCC----CcccccccccCCCceecCCcEEEEecCHHHHHHHHHhhhcccccccCCCcCCCCCCccEEEEEEEeEecCC-
Q 001464 643 SDGP----QRRLGIWNATLPNGLAVPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSILTIHVRGTDLKN- 717 (1073)
Q Consensus 643 ~~~~----~~~l~i~~~~~~g~~vv~~~~~~vvss~eev~~lL~~G~~nR~~~sT~~N~~SSRSH~IftI~V~~~~~~~- 717 (1073)
+... ...+.++.+ ..+++++.++++..+.+++|++.+|..|.++|.+++|.+|.+|||||+||+|+|.+.+...
T Consensus 150 ~~~~~~~~~~~l~i~ed-~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~i~~i~v~~~~~~~~ 228 (345)
T cd01368 150 DSPSSTKKRQSLRLRED-HNGNMYVAGLTEVEVSSTEEAREVFKRGQKNRRVAGTKLNRESSRSHSVFTIKLVQAPGDSD 228 (345)
T ss_pred CccccccCCCceEEEEC-CCCCEEecCCEEEEeCCHHHHHHHHHHhhccceeccccCcCCCCCceEEEEEEEEEeccCcc
Confidence 7653 234555543 3478889999999999999999999999999999999999999999999999998765432
Q ss_pred -------CcEEEeeeEEEecCCCccccCCcchhhhHHHHHHHhhhHHHHHHHHHHHhc------CCCCccCcCchhhhhh
Q 001464 718 -------GAILRGSLHLIDLAGSERVDRSEATGDRLREAQHINKSLSALGDVIFALAH------KNPHVPYRNSKLTQVL 784 (1073)
Q Consensus 718 -------~~~~~skL~LVDLAGSER~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~------k~~hVPYRdSKLTrLL 784 (1073)
+....|+|+|||||||||..++++.|++++|+.+||+||++|++||.+|++ +..|||||+||||+||
T Consensus 229 ~~~~~~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~aL~~vi~aL~~~~~~~~~~~~iPyR~SkLT~lL 308 (345)
T cd01368 229 GDVDQDKDQITVSQLSLVDLAGSERTSRTQNTGERLKEAGNINTSLMTLGKCIEVLRENQLSGSTNKMVPYRDSKLTHLF 308 (345)
T ss_pred cccccCCCceEEEEEEEEecccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhcccCCCCcCCCcCCHHHHHH
Confidence 456789999999999999999999999999999999999999999999986 5689999999999999
Q ss_pred hhccCCCcceeeEEecCCCCCCHHHHHHHHHHHhHhc
Q 001464 785 QSSLGGQAKTLMMVQLNPDVDSYSETISTLKFAERVS 821 (1073)
Q Consensus 785 qdSLGGnsKTlmI~~ISP~~~~~~ETlsTLrFA~Rak 821 (1073)
||+|||||+|+||+||||+..+++||++||+||.+|+
T Consensus 309 ~~~l~g~s~t~~I~~vsp~~~~~~eTl~tL~fa~~a~ 345 (345)
T cd01368 309 QNYFDGEGKARMIVNVNPCASDYDETLHVMKFSAIAQ 345 (345)
T ss_pred HHhcCCCCeEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999974
No 11
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=100.00 E-value=2.3e-73 Score=647.54 Aligned_cols=328 Identities=40% Similarity=0.618 Sum_probs=288.5
Q ss_pred CCEEEEeecCCCCCcccCCC--ccEEEEccCCEEEEeCCCCCC--CCCceeeeeceeeCCC-------CChHHHHhc-hH
Q 001464 494 GNIRVYCRIRPFLPGQSKKQ--TTIEYIGENGELVVSNPLKQG--KDNHRLFKFNKVFGPE-------ASQEEVFLD-TR 561 (1073)
Q Consensus 494 GnIRV~~RVRP~l~~e~~~~--~~v~~~~~~~~l~v~~p~~~~--~~~~k~F~FD~VF~~~-------atQeeVf~~-~~ 561 (1073)
++|+|||||||+...|.... ..+.+ .+..+.+.+|.... ....+.|.||+||++. ++|++||+. +.
T Consensus 1 ~~i~V~vRvRP~~~~E~~~~~~~~~~~--~~~~v~v~~~~~~~~~~~~~~~f~FD~vf~~~~~~~~~~~tq~~vf~~~~~ 78 (356)
T cd01365 1 ANVKVAVRVRPFNSREKNRGSKCIVQM--PGKVTTLKNPKAADATRKKPKSFSFDHSYWSHDSEDPHYASQEDVFEDLGR 78 (356)
T ss_pred CCEEEEEEeCcCChhhhccCCceEEEE--CCCEEEEEcCCcccccccCceEEECCeEecccCCCCCCCCCHHHHHHHHHH
Confidence 68999999999998765433 23333 33677777775311 2345789999999999 999999998 58
Q ss_pred HHHHHhhcCcceeEEeecccCCCCCeeeecCCCCCCCccchhHHHHHHHHHHHHhccC-CceEEEEEEEEEEecceeeec
Q 001464 562 PLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPCISSTEDWGVNYRALNDLFEISESRKN-SILYEVGVQMVEIYNEQVRDL 640 (1073)
Q Consensus 562 pLV~svLdGyN~~IfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~~~~-~~~~~V~vS~lEIYnE~V~DL 640 (1073)
|+|+++++|||+||||||||||||||||+|+ ..++|||||++++||+.+..... ...|.|.|||+|||||+|+||
T Consensus 79 p~v~~~l~G~n~~i~ayGqtGSGKT~Tm~G~----~~~~Gli~r~~~~Lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DL 154 (356)
T cd01365 79 ELLDHAFEGYNVCLFAYGQTGSGKSYTMMGY----KEEKGIIPRLCEELFQRIESKKEQNLSYEVEVSYMEIYNEKVRDL 154 (356)
T ss_pred HHHHHHhCCCceEEEEecCCCCCCeEEecCC----CCCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCeeeeC
Confidence 9999999999999999999999999999995 35789999999999998876554 678999999999999999999
Q ss_pred cCCCC-CCcccccccccCCCceecCCcEEEEecCHHHHHHHHHhhhcccccccCCCcCCCCCCccEEEEEEEeEecC---
Q 001464 641 LSSDG-PQRRLGIWNATLPNGLAVPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSILTIHVRGTDLK--- 716 (1073)
Q Consensus 641 L~~~~-~~~~l~i~~~~~~g~~vv~~~~~~vvss~eev~~lL~~G~~nR~~~sT~~N~~SSRSH~IftI~V~~~~~~--- 716 (1073)
|++.. ....+.++.+ ..+++++.++++..+.+++|++.++..|.++|.+++|.+|..|||||+||+|+|.+.+..
T Consensus 155 L~~~~~~~~~l~i~~~-~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~l~v~~~~~~~~~ 233 (356)
T cd01365 155 LNPKKKNKGNLKVREH-PVLGPYVEDLSKVAVTSYEDIQNLLEEGNKSRTTASTNMNDTSSRSHAVFTIVLTQKKLDKET 233 (356)
T ss_pred CCCCccCCcCceEEEC-CCCCEEeCCCEEEEeCCHHHHHHHHHHHHhcccccCCCCCCCcCCceEEEEEEEEEEecccCC
Confidence 99775 2334555543 346678899999999999999999999999999999999999999999999999887654
Q ss_pred -CCcEEEeeeEEEecCCCccccCCcchhhhHHHHHHHhhhHHHHHHHHHHHhcC--------CCCccCcCchhhhhhhhc
Q 001464 717 -NGAILRGSLHLIDLAGSERVDRSEATGDRLREAQHINKSLSALGDVIFALAHK--------NPHVPYRNSKLTQVLQSS 787 (1073)
Q Consensus 717 -~~~~~~skL~LVDLAGSER~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~k--------~~hVPYRdSKLTrLLqdS 787 (1073)
......|+|+|||||||||..+++..|++++|+.+||+||++|++||.+|+.. +.|||||+||||+||||+
T Consensus 234 ~~~~~~~s~l~~VDLAGsEr~~~~~~~~~~~~E~~~IN~SL~aL~~vi~~l~~~~~~~~~~~~~~ipyR~SkLT~lL~~~ 313 (356)
T cd01365 234 DLTTEKVSKISLVDLAGSERASSTGAEGDRLKEGSNINKSLTTLGKVISALADNSSAKSKKKSSFIPYRDSVLTWLLKEN 313 (356)
T ss_pred CCCceEEEEEEeeecccccccccccccchhhHHHHHHhHHHHHHHHHHHHHHhcccccccCCCCcCCCcCcHHHHHHHHh
Confidence 34678899999999999999999999999999999999999999999999853 489999999999999999
Q ss_pred cCCCcceeeEEecCCCCCCHHHHHHHHHHHhHhcccccccc
Q 001464 788 LGGQAKTLMMVQLNPDVDSYSETISTLKFAERVSGVELGAA 828 (1073)
Q Consensus 788 LGGnsKTlmI~~ISP~~~~~~ETlsTLrFA~Rak~I~~~~~ 828 (1073)
||||++|+||+||||...+++||++||+||+|++.|++.|.
T Consensus 314 lgg~s~t~~I~~vsp~~~~~~eTl~tL~fa~~~~~i~~~~~ 354 (356)
T cd01365 314 LGGNSKTAMIATISPADINYEETLSTLRYADRAKKIVNVAV 354 (356)
T ss_pred cCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCccc
Confidence 99999999999999999999999999999999999998764
No 12
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=100.00 E-value=1.8e-72 Score=639.10 Aligned_cols=334 Identities=41% Similarity=0.624 Sum_probs=292.4
Q ss_pred CCEEEEeecCCCCCcccCC--CccEEEEccCCEEEEeCCCCCCCCCceeeeeceeeCCCCChHHHHhc-hHHHHHHhhcC
Q 001464 494 GNIRVYCRIRPFLPGQSKK--QTTIEYIGENGELVVSNPLKQGKDNHRLFKFNKVFGPEASQEEVFLD-TRPLIRSVLDG 570 (1073)
Q Consensus 494 GnIRV~~RVRP~l~~e~~~--~~~v~~~~~~~~l~v~~p~~~~~~~~k~F~FD~VF~~~atQeeVf~~-~~pLV~svLdG 570 (1073)
+||+|+|||||+.+.|... ...+.+.+.+..+.+.++.. .....+.|.||+||+++++|++||+. +.|+|+++++|
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~i~~~~~~~~i~~~~~~~-~~~~~~~f~Fd~vf~~~~~q~~vy~~~~~plv~~~~~G 80 (352)
T cd01364 2 SNIQVVVRCRPRNSRERKEKSSVVVEVSGSSKEIIVSTGGA-DKQSTKTYTFDKVFGPEADQIEVYSQVVSPILDEVLMG 80 (352)
T ss_pred CCEEEEEEcCcCCccccccCCCeEEEEcCCCcEEEEcCCCc-ccccceeEeccccCCCCCCHHHHHHHHHHHHHHHHhCC
Confidence 6999999999998877543 23344444446666655432 23356789999999999999999988 69999999999
Q ss_pred cceeEEeecccCCCCCeeeecCCCC-------CCCccchhHHHHHHHHHHHHhccCCceEEEEEEEEEEecceeeeccCC
Q 001464 571 YNVCIFAYGQTGSGKTYTMSGPCIS-------STEDWGVNYRALNDLFEISESRKNSILYEVGVQMVEIYNEQVRDLLSS 643 (1073)
Q Consensus 571 yN~~IfAYGQTGSGKTyTM~G~~~~-------~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~V~DLL~~ 643 (1073)
||+||||||||||||||||+|+... ...++|||||++.+||+.++.. ...|.|.|||+|||||+|+|||++
T Consensus 81 ~n~~i~ayG~tgSGKTyTl~G~~~~~~~~~~~~~~~~Glipr~~~~Lf~~~~~~--~~~~~v~~S~~EIy~e~v~DLL~~ 158 (352)
T cd01364 81 YNCTIFAYGQTGTGKTYTMEGDRTDNKGSTWELSPHAGIIPRALYQLFEKLESQ--NTEYSVKVSYLELYNEELFDLLSS 158 (352)
T ss_pred CeEEEEECCCCCCCCcEEecCCCcccccccccccccCCchHHHHHHHHHHHHhc--cceeEEEEEEEEeeCCeeeeCCCC
Confidence 9999999999999999999996432 2457899999999999988765 567999999999999999999997
Q ss_pred CC-CCccccccccc-CCCceecCCcEEEEecCHHHHHHHHHhhhcccccccCCCcCCCCCCccEEEEEEEeEecCC---C
Q 001464 644 DG-PQRRLGIWNAT-LPNGLAVPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSILTIHVRGTDLKN---G 718 (1073)
Q Consensus 644 ~~-~~~~l~i~~~~-~~g~~vv~~~~~~vvss~eev~~lL~~G~~nR~~~sT~~N~~SSRSH~IftI~V~~~~~~~---~ 718 (1073)
.. ..+.+.+..+. ..+++++.++++..+.+++|++.++..|.++|++++|.+|..|||||+||+|+|.+..... .
T Consensus 159 ~~~~~~~l~i~e~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRSH~i~~i~i~~~~~~~~~~~ 238 (352)
T cd01364 159 ESDLNKPLRIFDDTNNKGGVVIQGLEEITVNNANEGLKLLEKGSAKRKTAATLMNDQSSRSHSIFSITIHIKETTISGEE 238 (352)
T ss_pred ccccCccceEEeccCcCCCEEeCCcEEEEeCCHHHHHHHHHHHhhhcccccCcCCCCCCCCceEEEEEEEEeccCCCCCc
Confidence 65 23455565553 4578899999999999999999999999999999999999999999999999998765432 3
Q ss_pred cEEEeeeEEEecCCCccccCCcchhhhHHHHHHHhhhHHHHHHHHHHHhcCCCCccCcCchhhhhhhhccCCCcceeeEE
Q 001464 719 AILRGSLHLIDLAGSERVDRSEATGDRLREAQHINKSLSALGDVIFALAHKNPHVPYRNSKLTQVLQSSLGGQAKTLMMV 798 (1073)
Q Consensus 719 ~~~~skL~LVDLAGSER~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~k~~hVPYRdSKLTrLLqdSLGGnsKTlmI~ 798 (1073)
....|+|+|||||||||..+.++.+.+++|+..||+||.+|++||.+|+.++.|||||+||||+||+|+|||||+|+||+
T Consensus 239 ~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~iN~SL~~L~~vi~al~~~~~~vpyR~S~LT~lL~~~Lgg~s~t~~I~ 318 (352)
T cd01364 239 LVKIGKLNLVDLAGSENIGRSGAENKRAREAGNINQSLLTLGRVINALVEKSPHIPYRESKLTRLLQDSLGGRTKTSIIA 318 (352)
T ss_pred cEEEEEEEEEECCCccccccccCcchhhHHHhhhhHHHHHHHHHHHHHHcCCCCCCCcccHHHHHHHHhcCCCceEEEEE
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHhHhcccccccccc
Q 001464 799 QLNPDVDSYSETISTLKFAERVSGVELGAARS 830 (1073)
Q Consensus 799 ~ISP~~~~~~ETlsTLrFA~Rak~I~~~~~k~ 830 (1073)
||||...+++||++||+||+|++.|.+.|..+
T Consensus 319 ~vsp~~~~~~eTl~TL~~a~~~~~i~n~P~~n 350 (352)
T cd01364 319 TISPASINLEETLSTLEYAHRAKNIKNKPEVN 350 (352)
T ss_pred EeCCCcccHHHHHHHHHHHHHHhhccCccccC
Confidence 99999999999999999999999999888543
No 13
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=100.00 E-value=9.2e-73 Score=634.60 Aligned_cols=315 Identities=37% Similarity=0.520 Sum_probs=277.1
Q ss_pred CCEEEEeecCCCCCcccCCC-ccEEEEccCCEEEEeCCCCCC----CCCceeeeeceeeCCCCChHHHHhc-hHHHHHHh
Q 001464 494 GNIRVYCRIRPFLPGQSKKQ-TTIEYIGENGELVVSNPLKQG----KDNHRLFKFNKVFGPEASQEEVFLD-TRPLIRSV 567 (1073)
Q Consensus 494 GnIRV~~RVRP~l~~e~~~~-~~v~~~~~~~~l~v~~p~~~~----~~~~k~F~FD~VF~~~atQeeVf~~-~~pLV~sv 567 (1073)
++|+|||||||+.+.|.... ..+..+..++.+.+..|...- ....+.|.||+||+++++|++||+. +.|+|+++
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vf~~~~~plv~~~ 80 (322)
T cd01367 1 MKITVAVRKRPLNDKELSKGETDVVSCESNPTVTVHEPKTKVDLTKYIEKHTFRFDYVFDEAVTNEEVYRSTVKPLIPHV 80 (322)
T ss_pred CCeEEEEEcCcCChhhhccCCceEEEECCCCEEEEecCccccccccccCCceEecceEECCCCCHHHHHHHHHHHHHHHH
Confidence 58999999999998775332 233333444577776553211 1125789999999999999999998 69999999
Q ss_pred hcCcceeEEeecccCCCCCeeeecCCCCCCCccchhHHHHHHHHHHHHhccCCceEEEEEEEEEEecceeeeccCCCCCC
Q 001464 568 LDGYNVCIFAYGQTGSGKTYTMSGPCISSTEDWGVNYRALNDLFEISESRKNSILYEVGVQMVEIYNEQVRDLLSSDGPQ 647 (1073)
Q Consensus 568 LdGyN~~IfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~V~DLL~~~~~~ 647 (1073)
++|||+||||||||||||||||+|+ ..++||+||++++||+.++... ..|.|++||+|||||+|+|||++.
T Consensus 81 ~~G~n~~i~ayGqtGSGKTyTm~G~----~~~~Glipr~~~~lf~~~~~~~--~~~~v~~S~~EIy~e~v~DLL~~~--- 151 (322)
T cd01367 81 FEGGVATCFAYGQTGSGKTYTMLGD----ENQEGLYALAARDIFRLLAQPN--DDLGVTVSFFEIYGGKLFDLLNDR--- 151 (322)
T ss_pred hCCCceEEEeccCCCCCCceEecCc----CCcCccHHHHHHHHHHHHhccc--cccEEEEEEEeeecCchhhhccCc---
Confidence 9999999999999999999999995 4789999999999999987654 679999999999999999999873
Q ss_pred cccccccccCCCceecCCcEEEEecCHHHHHHHHHhhhcccccccCCCcCCCCCCccEEEEEEEeEecCCCcEEEeeeEE
Q 001464 648 RRLGIWNATLPNGLAVPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSILTIHVRGTDLKNGAILRGSLHL 727 (1073)
Q Consensus 648 ~~l~i~~~~~~g~~vv~~~~~~vvss~eev~~lL~~G~~nR~~~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~~skL~L 727 (1073)
+.+.++. +..+++++.++++..+.+++|++.++..|.++|.+++|.+|..|||||+||+|+|.+.+. ....|+|+|
T Consensus 152 ~~l~i~~-~~~~~~~v~~l~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~---~~~~s~l~~ 227 (322)
T cd01367 152 KRLSVLE-DGKGNVQIVGLTEKPVTSVDELLELIESGNSLRTTGSTGANDQSSRSHAILQIILKNKKL---NKLLGKLSF 227 (322)
T ss_pred cceeEEE-cCCCCEEeCCCEEEEeCCHHHHHHHHHHHhcccccccCcCCCCcccceEEEEEEEEEecC---CeeEEEEEE
Confidence 3455544 445778899999999999999999999999999999999999999999999999987754 567899999
Q ss_pred EecCCCccccCCc-chhhhHHHHHHHhhhHHHHHHHHHHHhcCCCCccCcCchhhhhhhhccCCCcceeeEEecCCCCCC
Q 001464 728 IDLAGSERVDRSE-ATGDRLREAQHINKSLSALGDVIFALAHKNPHVPYRNSKLTQVLQSSLGGQAKTLMMVQLNPDVDS 806 (1073)
Q Consensus 728 VDLAGSER~~ks~-~~g~rlkEa~~INkSLsaLg~VI~aLa~k~~hVPYRdSKLTrLLqdSLGGnsKTlmI~~ISP~~~~ 806 (1073)
||||||||...+. ..+++++|+.+||+||++|++||.+|++++.||||||||||+||||+|||||+|+|||||||...+
T Consensus 228 vDLAGsE~~~~~~~~~~~~~~e~~~IN~SL~~L~~vi~al~~~~~~iPyRdSkLT~lL~~~L~g~~~t~~I~~vsp~~~~ 307 (322)
T cd01367 228 IDLAGSERGADTSEHDRQTRKEGAEINKSLLALKECIRALASNKAHVPFRGSKLTQVLRDSFIGNSKTVMIATISPSASS 307 (322)
T ss_pred eecCCccccccccccchhhHHhHhHHhHHHHHHHHHHHHHhcCCCcCCCccCHHHHHHHHhhCCCCeEEEEEEeCCchhh
Confidence 9999999987765 568999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHhc
Q 001464 807 YSETISTLKFAERVS 821 (1073)
Q Consensus 807 ~~ETlsTLrFA~Rak 821 (1073)
++||++||+||+|+|
T Consensus 308 ~~eTl~tL~fa~r~k 322 (322)
T cd01367 308 CEHTLNTLRYADRVK 322 (322)
T ss_pred HHHHHHHHHHHHhhC
Confidence 999999999999985
No 14
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=100.00 E-value=5.8e-72 Score=630.76 Aligned_cols=326 Identities=42% Similarity=0.681 Sum_probs=289.6
Q ss_pred CCEEEEeecCCCCCcccCC--CccEEEEccCCEEEEeCCCCCCCCCceeeeeceeeCCCCChHHHHhc-hHHHHHHhhcC
Q 001464 494 GNIRVYCRIRPFLPGQSKK--QTTIEYIGENGELVVSNPLKQGKDNHRLFKFNKVFGPEASQEEVFLD-TRPLIRSVLDG 570 (1073)
Q Consensus 494 GnIRV~~RVRP~l~~e~~~--~~~v~~~~~~~~l~v~~p~~~~~~~~k~F~FD~VF~~~atQeeVf~~-~~pLV~svLdG 570 (1073)
.||+|+|||||+++.|... ...+.....++.+.+.+|........+.|.||+||+++++|++||+. +.|+|+++++|
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~vy~~~~~plv~~~~~G 80 (333)
T cd01371 1 ENVKVVVRCRPLNKREKSEGAPEIVGVDENRGQVTVHNPKADAKEPPKVFTFDAVYDPNSTQEDVYNETARPLVDSVLEG 80 (333)
T ss_pred CCeEEEEEcCcCChhhhhcCCCeEEEEcCCCCEEEEeCCcccccCCCceeeeccccCCCccHHHHHHHHHHHHHHHHhCC
Confidence 3899999999999877543 33455556677888887754444567899999999999999999988 69999999999
Q ss_pred cceeEEeecccCCCCCeeeecCCCCCCCccchhHHHHHHHHHHHHhccCCceEEEEEEEEEEecceeeeccCCCCCCccc
Q 001464 571 YNVCIFAYGQTGSGKTYTMSGPCISSTEDWGVNYRALNDLFEISESRKNSILYEVGVQMVEIYNEQVRDLLSSDGPQRRL 650 (1073)
Q Consensus 571 yN~~IfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~V~DLL~~~~~~~~l 650 (1073)
||+||||||||||||||||+|+.. ...++|||||++++||+.+....+ ..|.|.|||+|||||+|+|||++... ..+
T Consensus 81 ~n~~i~ayG~tgSGKTyTm~G~~~-~~~~~Glipr~~~~Lf~~~~~~~~-~~~~v~~S~~Eiy~e~v~DLL~~~~~-~~l 157 (333)
T cd01371 81 YNGTIFAYGQTGTGKTFTMEGVRE-PPELRGIIPNSFAHIFGHIAKAEN-VQFLVRVSYLEIYNEEVRDLLGKDQK-KKL 157 (333)
T ss_pred CceeEEecCCCCCCCcEeecCCCC-cccccchHHHHHHHHHHHHhhccC-ccEEEEEEEEEeeCCeeeeCCCCCCC-Cce
Confidence 999999999999999999999642 456899999999999998876554 78999999999999999999987542 345
Q ss_pred ccccccCCCceecCCcEEEEecCHHHHHHHHHhhhcccccccCCCcCCCCCCccEEEEEEEeEecC---CCcEEEeeeEE
Q 001464 651 GIWNATLPNGLAVPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSILTIHVRGTDLK---NGAILRGSLHL 727 (1073)
Q Consensus 651 ~i~~~~~~g~~vv~~~~~~vvss~eev~~lL~~G~~nR~~~sT~~N~~SSRSH~IftI~V~~~~~~---~~~~~~skL~L 727 (1073)
.+..+ ..+++++.++++..+.+++|+..++..|.++|.+++|.+|..|||||+||+|+|...+.. .+....|+|+|
T Consensus 158 ~i~~~-~~~~~~v~~l~~~~v~s~~~~~~~l~~g~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~~s~L~~ 236 (333)
T cd01371 158 ELKER-PDRGVYVKDLSMFVVKNAEEMDKLMTLGNKNRSVGATNMNEDSSRSHSIFTITIECSEKGEDGENHIRVGKLNL 236 (333)
T ss_pred eEEEc-CCCCEEeCCCEEEEeCCHHHHHHHHHHHHhhCccccccccCCCCCCcEEEEEEEEEEeccCCCCCcEEEEEEEE
Confidence 55544 345678889999999999999999999999999999999999999999999999987664 34567899999
Q ss_pred EecCCCccccCCcchhhhHHHHHHHhhhHHHHHHHHHHHhcCCC-CccCcCchhhhhhhhccCCCcceeeEEecCCCCCC
Q 001464 728 IDLAGSERVDRSEATGDRLREAQHINKSLSALGDVIFALAHKNP-HVPYRNSKLTQVLQSSLGGQAKTLMMVQLNPDVDS 806 (1073)
Q Consensus 728 VDLAGSER~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~k~~-hVPYRdSKLTrLLqdSLGGnsKTlmI~~ISP~~~~ 806 (1073)
||||||||..+++..|++++|+..||+||.+|++||.+|+.+.. |||||+||||+||+|+|||||+|+||+||+|...+
T Consensus 237 VDLAGsEr~~~~~~~~~~~~E~~~iN~sL~~L~~vi~al~~~~~~~ipyR~SkLT~lL~~~l~g~s~t~~I~~vsP~~~~ 316 (333)
T cd01371 237 VDLAGSERQSKTGATGDRLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGNSKTVMCANIGPADYN 316 (333)
T ss_pred EECCCCCcccccCCchhhhHhHhhhhhHHHHHHHHHHHHHhCCCCcCCCccCHHHHHHHHhcCCCceEEEEEEeCCcccc
Confidence 99999999999999999999999999999999999999998775 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHhccc
Q 001464 807 YSETISTLKFAERVSGV 823 (1073)
Q Consensus 807 ~~ETlsTLrFA~Rak~I 823 (1073)
++||++||+||+|++.|
T Consensus 317 ~~eTl~TL~fa~r~r~I 333 (333)
T cd01371 317 YDETLSTLRYANRAKNI 333 (333)
T ss_pred HHHHHHHHHHHHHhhcC
Confidence 99999999999999876
No 15
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=100.00 E-value=4.9e-72 Score=627.96 Aligned_cols=314 Identities=36% Similarity=0.581 Sum_probs=281.3
Q ss_pred CEEEEeecCCCCCcccCCCccEEEEccC----CEEEEeCCCCCCCCCceeeeeceeeCCCCChHHHHhc-hHHHHHHhhc
Q 001464 495 NIRVYCRIRPFLPGQSKKQTTIEYIGEN----GELVVSNPLKQGKDNHRLFKFNKVFGPEASQEEVFLD-TRPLIRSVLD 569 (1073)
Q Consensus 495 nIRV~~RVRP~l~~e~~~~~~v~~~~~~----~~l~v~~p~~~~~~~~k~F~FD~VF~~~atQeeVf~~-~~pLV~svLd 569 (1073)
||+|||||||+.+.|.....++...+.+ ..+.+.+|... ...+.|.||+||+++++|++||+. +.|+|+++++
T Consensus 1 ~i~V~vRvRP~~~~e~~~~~~v~~~~~~~~~~~~v~~~~~~~~--~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~ 78 (319)
T cd01376 1 NVRVVVRVRPFLDCEEDSSSCVRGIDSDQGQAKSVEIENPRNR--GETKKYQFDAFYGTECTQEDIFSREVKPIVPHLLS 78 (319)
T ss_pred CcEEEEEeCcCCccccCCCceEEEeCCCCCcceEEEEeCCCCC--CCccEEecCeEECCCCCHHHHHHHHHHHHHHHHhC
Confidence 7999999999998886666666665443 36777776422 235789999999999999999998 7999999999
Q ss_pred CcceeEEeecccCCCCCeeeecCCCCCCCccchhHHHHHHHHHHHHhccCCceEEEEEEEEEEecceeeeccCCCCCCcc
Q 001464 570 GYNVCIFAYGQTGSGKTYTMSGPCISSTEDWGVNYRALNDLFEISESRKNSILYEVGVQMVEIYNEQVRDLLSSDGPQRR 649 (1073)
Q Consensus 570 GyN~~IfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~V~DLL~~~~~~~~ 649 (1073)
|||+||||||||||||||||+|+ ..++||+||++++||+.++.. .+.|.|.+||+|||||.|+|||++... .
T Consensus 79 G~n~~i~ayG~tgSGKTyTm~G~----~~~~Glipr~~~~Lf~~~~~~--~~~~~v~~S~~EIy~e~v~DLL~~~~~--~ 150 (319)
T cd01376 79 GQNATVFAYGSTGAGKTHTMLGD----PNEPGLIPRTLSDLLRMGRKQ--AWTGAFSMSYYEIYNEKVYDLLEPAKK--E 150 (319)
T ss_pred CCceEEEEECCCCCCCcEEEeCC----cCccchHHHHHHHHHHHHhhc--cccceEEEEEEEEECCEeeEccCCCCC--C
Confidence 99999999999999999999995 458899999999999987654 367999999999999999999987532 3
Q ss_pred cccccccCCCceecCCcEEEEecCHHHHHHHHHhhhcccccccCCCcCCCCCCccEEEEEEEeEecCCCcEEEeeeEEEe
Q 001464 650 LGIWNATLPNGLAVPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSILTIHVRGTDLKNGAILRGSLHLID 729 (1073)
Q Consensus 650 l~i~~~~~~g~~vv~~~~~~vvss~eev~~lL~~G~~nR~~~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~~skL~LVD 729 (1073)
+.++. +..+++++.+++...+.+++|+..++..|.++|.+++|.+|..|||||+||+|+|.+.+. +....|+|+|||
T Consensus 151 l~i~~-~~~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~--~~~~~s~l~~VD 227 (319)
T cd01376 151 LPIRE-DKDGNILIVGLTSKPIKSMAEFEEAYIPASKNRTVAATKLNDNSSRSHAVLRIKVTQPAS--NIQLEGKLNLID 227 (319)
T ss_pred ceEEE-cCCCCEEeeCCEEEEeCCHHHHHHHHHHHHhhhccccCcCCCccCCCeEEEEEEEEEECC--CceEEEEEEEEE
Confidence 44543 345778889999999999999999999999999999999999999999999999987754 346789999999
Q ss_pred cCCCccccCCcchhhhHHHHHHHhhhHHHHHHHHHHHhcCCCCccCcCchhhhhhhhccCCCcceeeEEecCCCCCCHHH
Q 001464 730 LAGSERVDRSEATGDRLREAQHINKSLSALGDVIFALAHKNPHVPYRNSKLTQVLQSSLGGQAKTLMMVQLNPDVDSYSE 809 (1073)
Q Consensus 730 LAGSER~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~k~~hVPYRdSKLTrLLqdSLGGnsKTlmI~~ISP~~~~~~E 809 (1073)
||||||..+++..|.+++|+.+||+||++|++||.+|+.+..|||||+|+||+||+|+|||||+|+||+||||...+++|
T Consensus 228 LAGsE~~~~~~~~g~~~~e~~~iN~Sl~~L~~vi~aL~~~~~~ipyr~S~LT~lL~~~L~g~s~t~~i~~vsp~~~~~~e 307 (319)
T cd01376 228 LAGSEDNRRTGNEGIRLKESAAINSSLFVLSKVVDALNKGLPRIPYRESKLTRLLQDSLGGGSRCIMVANIAPERSFYQD 307 (319)
T ss_pred CCCCCcccccCCccchhhhhhhhhhhHHHHHHHHHHHhcCCCcCCCccCHHHHHHHHhcCCCccEEEEEEeCCchhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHhc
Q 001464 810 TISTLKFAERVS 821 (1073)
Q Consensus 810 TlsTLrFA~Rak 821 (1073)
|++||+||+|++
T Consensus 308 Tl~TL~fa~r~~ 319 (319)
T cd01376 308 TLSTLNFASRSK 319 (319)
T ss_pred HHHHHHHHHhhC
Confidence 999999999986
No 16
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=4.5e-73 Score=657.93 Aligned_cols=353 Identities=39% Similarity=0.602 Sum_probs=306.4
Q ss_pred CCEEEEeecCCCCCcccCCCc--cEEEEccCCEEEEeCCC-CCC---CCCceeeeeceeeCCC-------CChHHHHhch
Q 001464 494 GNIRVYCRIRPFLPGQSKKQT--TIEYIGENGELVVSNPL-KQG---KDNHRLFKFNKVFGPE-------ASQEEVFLDT 560 (1073)
Q Consensus 494 GnIRV~~RVRP~l~~e~~~~~--~v~~~~~~~~l~v~~p~-~~~---~~~~k~F~FD~VF~~~-------atQeeVf~~~ 560 (1073)
.+|||.|||||++..|.+... .+.+. ....++..|+ ..+ ..+.++|.||++|.+. +.|+.||..+
T Consensus 4 ~kVkVaVRVRP~nrREl~l~tk~vv~vd--~~q~vl~~~pp~~~~~~~k~pktFAFDhcF~s~dpes~n~agQE~Vf~~l 81 (1714)
T KOG0241|consen 4 AKVKVAVRVRPMNRRELELSTKCVVEVD--KNQTVLHPPPPNHKIGESKGPKTFAFDHCFWSMDPESKNYAGQETVFKCL 81 (1714)
T ss_pred cceEEEEEecccchhhhcccccceEEec--cCceeecCCCccccccccCCCceeecccccccCCccccccccchhHHHhc
Confidence 689999999999988865443 33332 3333444332 211 2467899999999763 7899999884
Q ss_pred -HHHHHHhhcCcceeEEeecccCCCCCeeeecCCCCCCCccchhHHHHHHHHHHHHhcc-CCceEEEEEEEEEEecceee
Q 001464 561 -RPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPCISSTEDWGVNYRALNDLFEISESRK-NSILYEVGVQMVEIYNEQVR 638 (1073)
Q Consensus 561 -~pLV~svLdGyN~~IfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~~~-~~~~~~V~vS~lEIYnE~V~ 638 (1073)
.-+|+++|+|||+||||||||||||||||+| ..+.+|||||++..||..+.... ....|.|.|||+|||||++|
T Consensus 82 G~~il~naf~GyNaCifaYGQtGsGKsYsmmG----t~~QpGiIPrlc~~lFe~I~k~~n~~~tfkVeVSymEIynEkv~ 157 (1714)
T KOG0241|consen 82 GEGILENAFQGYNACIFAYGQTGSGKSYSMMG----TAEQPGIIPRLCESLFERIDKESNPSQTFKVEVSYMEIYNEKVR 157 (1714)
T ss_pred chHHHHHHhhccceeeEEecccCCCceeEeec----cCCCCCchhHHHHHHHHHHHhccCCCceEEEEEEHHHHhhcchh
Confidence 7789999999999999999999999999999 46789999999999999877544 56789999999999999999
Q ss_pred eccCCCCCCcccccccccCCCceecCCcEEEEecCHHHHHHHHHhhhcccccccCCCcCCCCCCccEEEEEEEeE--ecC
Q 001464 639 DLLSSDGPQRRLGIWNATLPNGLAVPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSILTIHVRGT--DLK 716 (1073)
Q Consensus 639 DLL~~~~~~~~l~i~~~~~~g~~vv~~~~~~vvss~eev~~lL~~G~~nR~~~sT~~N~~SSRSH~IftI~V~~~--~~~ 716 (1073)
|||.|.+....+.++.... -++++++++...|++++|+-.+|..|+++|++++|+||..|||||+||.|.|.+. |..
T Consensus 158 DLLdPk~ssqtlkVrehsv-lGp~vdGLS~laV~S~qdId~lm~egnKsrtvaatnmn~EssrsHaVFslvvtQ~l~D~k 236 (1714)
T KOG0241|consen 158 DLLDPKGSSQTLKVREHSV-LGPYVDGLSQLAVTSFQDIDSLMSEGNKSRTVAATNMNEESSRSHAVFSLVVTQTLYDLK 236 (1714)
T ss_pred hhhCCCCCcceeEEeeccc-ccccccchhhhhcccHHHHHHHHHhccccceeeeecccccccccceeEEEEEeeEEeccc
Confidence 9999998887777766543 5678999999999999999999999999999999999999999999999999875 444
Q ss_pred CCc--EEEeeeEEEecCCCccccCCcchhhhHHHHHHHhhhHHHHHHHHHHHhcC------CCCccCcCchhhhhhhhcc
Q 001464 717 NGA--ILRGSLHLIDLAGSERVDRSEATGDRLREAQHINKSLSALGDVIFALAHK------NPHVPYRNSKLTQVLQSSL 788 (1073)
Q Consensus 717 ~~~--~~~skL~LVDLAGSER~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~k------~~hVPYRdSKLTrLLqdSL 788 (1073)
+|. ...|+|.|||||||||+.++++.|+|++|+.+||+||++||.||.||+.+ +++||||||.||+||||+|
T Consensus 237 tg~SgeKvsklslVDLAgserasktga~g~rlkegsNinkSLttLglVIsaLadq~n~kgkdKfvPYrDSVLTwLLkD~L 316 (1714)
T KOG0241|consen 237 TGHSGEKVSKLSLVDLAGSERASKTGAAGSRLKEGSNINKSLTTLGLVISALADQKNGKGKDKFVPYRDSVLTWLLKDNL 316 (1714)
T ss_pred cCcchhheeeeeEEEeccccccccccchhhhhhhcCCcchhhHHHHHHHHHHHHhhcCCCccccccchhHHHHHHHHhhc
Confidence 443 35689999999999999999999999999999999999999999999953 4699999999999999999
Q ss_pred CCCcceeeEEecCCCCCCHHHHHHHHHHHhHhccccccccccCCC-cchHHHHHHHHHHHHHHHHH
Q 001464 789 GGQAKTLMMVQLNPDVDSYSETISTLKFAERVSGVELGAARSNKE-GSDVRELMEQVGSLKDIITK 853 (1073)
Q Consensus 789 GGnsKTlmI~~ISP~~~~~~ETlsTLrFA~Rak~I~~~~~k~~~~-~~~v~eL~~qv~~Lk~~i~~ 853 (1073)
||||+|+||+||||+.++|+||++|||||.||+.|.+.+..+.++ .+.+++|.+++..|+.++..
T Consensus 317 GGNsrTvMiatvSPaAdnyeeTlStLRYadrAkrIvN~avvNedpnarvirElReEve~lr~qL~~ 382 (1714)
T KOG0241|consen 317 GGNSRTVMIATVSPAADNYEETLSTLRYADRAKRIVNHAVVNEDPNARVIRELREEVEKLREQLEQ 382 (1714)
T ss_pred CCCceeEEEEEecccccchHHHHHHHHHHHHHHHhhccccccCCchHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999988776554 45689999999999888876
No 17
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=100.00 E-value=1.2e-71 Score=626.74 Aligned_cols=325 Identities=53% Similarity=0.862 Sum_probs=292.8
Q ss_pred cCCEEEEeecCCCCCcccCC-CccEEEEccC-CEEEEeCCCCCCCCCceeeeeceeeCCCCChHHHHhchHHHHHHhhcC
Q 001464 493 KGNIRVYCRIRPFLPGQSKK-QTTIEYIGEN-GELVVSNPLKQGKDNHRLFKFNKVFGPEASQEEVFLDTRPLIRSVLDG 570 (1073)
Q Consensus 493 KGnIRV~~RVRP~l~~e~~~-~~~v~~~~~~-~~l~v~~p~~~~~~~~k~F~FD~VF~~~atQeeVf~~~~pLV~svLdG 570 (1073)
||+|+|||||||+.+.+... ...+.+.+.+ ..+.+.++ ....+.|.||+||+++++|++||+.+.|+|+++++|
T Consensus 1 ~~~i~V~vRirP~~~~e~~~~~~~~~~~~~~~~~i~~~~~----~~~~~~f~fD~vf~~~~~q~~v~~~v~p~v~~~~~G 76 (329)
T cd01366 1 KGNIRVFCRVRPLLPSESTEYSSVISFPDEDGGTIELSKG----TGKKKSFSFDRVFDPDASQEDVFEEVSPLVQSALDG 76 (329)
T ss_pred CCCEEEEEEcCcCCccccCCCccEEEEcCCCceEEEEeCC----CCCceEEecCEEECCCCCHHHHHHHHHHHHHHHhCC
Confidence 69999999999998887533 3344454443 55555443 234578999999999999999999899999999999
Q ss_pred cceeEEeecccCCCCCeeeecCCCCCCCccchhHHHHHHHHHHHHhccC-CceEEEEEEEEEEecceeeeccCCCC-CCc
Q 001464 571 YNVCIFAYGQTGSGKTYTMSGPCISSTEDWGVNYRALNDLFEISESRKN-SILYEVGVQMVEIYNEQVRDLLSSDG-PQR 648 (1073)
Q Consensus 571 yN~~IfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~~~~-~~~~~V~vS~lEIYnE~V~DLL~~~~-~~~ 648 (1073)
+|+||||||||||||||||+|+ ..++||+||++++||..++...+ +..|.|.+||+|||||+|+|||++.. ...
T Consensus 77 ~~~~i~ayG~tgSGKT~tl~G~----~~~~Gli~r~~~~lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~~~ 152 (329)
T cd01366 77 YNVCIFAYGQTGSGKTYTMEGP----PENPGIIPRALEQLFNTAEELKEKGWSYTITASMLEIYNETIRDLLATKPAPKK 152 (329)
T ss_pred CceEEEEeCCCCCCCcEEecCC----CCCCCcHHHHHHHHHHHHHhhhccCceEEEEEEEEEEECCEeEECCCCCcCCCC
Confidence 9999999999999999999995 47889999999999998877654 78899999999999999999999763 233
Q ss_pred ccccccccCCCceecCCcEEEEecCHHHHHHHHHhhhcccccccCCCcCCCCCCccEEEEEEEeEecCCCcEEEeeeEEE
Q 001464 649 RLGIWNATLPNGLAVPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSILTIHVRGTDLKNGAILRGSLHLI 728 (1073)
Q Consensus 649 ~l~i~~~~~~g~~vv~~~~~~vvss~eev~~lL~~G~~nR~~~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~~skL~LV 728 (1073)
.+.++.+. .+++++.+++...+.+++|+..++..|.++|.+++|.+|..|||||+||+|+|.+.+...+....|+|+||
T Consensus 153 ~l~i~~~~-~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~~~~~s~l~~V 231 (329)
T cd01366 153 KLEIKHDS-KGETYVTNLTEVPVSSPEEVTRLLNLGSKNRSVASTNMNEHSSRSHAVFQLKIRGTNLQTGEQTRGKLNLV 231 (329)
T ss_pred ceEEEECC-CCCEEecCCEEEEeCCHHHHHHHHHHHHhhcccccccccCCCCCccEEEEEEEEEEcCCCCcEEEEEEEEE
Confidence 45555444 67888999999999999999999999999999999999999999999999999998888888899999999
Q ss_pred ecCCCccccCCcchhhhHHHHHHHhhhHHHHHHHHHHHhcCCCCccCcCchhhhhhhhccCCCcceeeEEecCCCCCCHH
Q 001464 729 DLAGSERVDRSEATGDRLREAQHINKSLSALGDVIFALAHKNPHVPYRNSKLTQVLQSSLGGQAKTLMMVQLNPDVDSYS 808 (1073)
Q Consensus 729 DLAGSER~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~k~~hVPYRdSKLTrLLqdSLGGnsKTlmI~~ISP~~~~~~ 808 (1073)
||||||+..+.++.+.+++|+..||+||.+|++||.+|+.+..|||||+||||+||+++|||+++|+||+||||...+++
T Consensus 232 DLaGsE~~~~~~~~~~~~~e~~~in~Sl~~L~~vl~~l~~~~~~ipyr~S~LT~lL~~~l~g~~~t~~i~~vsp~~~~~~ 311 (329)
T cd01366 232 DLAGSERLKKSGATGDRLKEAQAINKSLSALGDVISALRSKDSHVPYRNSKLTYLLQDSLGGNSKTLMFVNISPLESNLS 311 (329)
T ss_pred ECCCCcccccccccchhhHhHhhhhhHHHHHHHHHHHHhcCCCcCCCcccHhHHHHHHhcCCCceEEEEEEeCCchhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHhcccccc
Q 001464 809 ETISTLKFAERVSGVELG 826 (1073)
Q Consensus 809 ETlsTLrFA~Rak~I~~~ 826 (1073)
||++||+||+|++.|++|
T Consensus 312 etl~tL~~a~~~~~i~~~ 329 (329)
T cd01366 312 ETLCSLRFASRVRSVELG 329 (329)
T ss_pred HHHHHHHHHHHhhcccCC
Confidence 999999999999999764
No 18
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=100.00 E-value=8.2e-72 Score=630.96 Aligned_cols=321 Identities=39% Similarity=0.664 Sum_probs=286.5
Q ss_pred CEEEEeecCCCCCcccCC--CccEEEEccCCEEEEeCCCCCCCCCceeeeeceeeCCCCChHHHHhc-hHHHHHHhhcCc
Q 001464 495 NIRVYCRIRPFLPGQSKK--QTTIEYIGENGELVVSNPLKQGKDNHRLFKFNKVFGPEASQEEVFLD-TRPLIRSVLDGY 571 (1073)
Q Consensus 495 nIRV~~RVRP~l~~e~~~--~~~v~~~~~~~~l~v~~p~~~~~~~~k~F~FD~VF~~~atQeeVf~~-~~pLV~svLdGy 571 (1073)
+|+|||||||+.+.|... ..++.+.+.+..+++.+ .+.|.||+||+++++|++||+. +.|+|+++++||
T Consensus 2 ~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~--------~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~G~ 73 (341)
T cd01372 2 SVRVAVRVRPLLPKELLEGCQVCVSVVPGEPQVTVGT--------DKSFTFDYVFDPSTSQEEVYNTCVAPLVDGLFEGY 73 (341)
T ss_pred CeEEEEECCCCCchhcccCCCeEEEEeCCCCEEEecC--------CcEEeccccCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 699999999999877543 34455555555555533 4689999999999999999998 589999999999
Q ss_pred ceeEEeecccCCCCCeeeecCCC--CCCCccchhHHHHHHHHHHHHhccCCceEEEEEEEEEEecceeeeccCCCC-CCc
Q 001464 572 NVCIFAYGQTGSGKTYTMSGPCI--SSTEDWGVNYRALNDLFEISESRKNSILYEVGVQMVEIYNEQVRDLLSSDG-PQR 648 (1073)
Q Consensus 572 N~~IfAYGQTGSGKTyTM~G~~~--~~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~V~DLL~~~~-~~~ 648 (1073)
|+||||||||||||||||+|+.. ....++|||||++++||..++.......|.|.|||+|||||+|+|||.+.. ...
T Consensus 74 n~~i~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~ 153 (341)
T cd01372 74 NATVLAYGQTGSGKTYTMGTAFTASEDEEEVGIIPRAIQHIFKKIDEKKDEPDFQLKVSFLELYNEEVRDLLSPSTSEKS 153 (341)
T ss_pred ccceeeecCCCCCCcEEecCCCccccccccCChHHHHHHHHHHHHHhccccceEEEEEEEEEeECCeeecCCCCcccCCC
Confidence 99999999999999999999643 236789999999999999998877778999999999999999999998764 223
Q ss_pred ccccccccCCCceecCCcEEEEecCHHHHHHHHHhhhcccccccCCCcCCCCCCccEEEEEEEeEecC----------CC
Q 001464 649 RLGIWNATLPNGLAVPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSILTIHVRGTDLK----------NG 718 (1073)
Q Consensus 649 ~l~i~~~~~~g~~vv~~~~~~vvss~eev~~lL~~G~~nR~~~sT~~N~~SSRSH~IftI~V~~~~~~----------~~ 718 (1073)
.+.++. +..+++++.++++..+.+++|++.+|..|.++|.+++|.+|..|||||+||+|+|.+.+.. ..
T Consensus 154 ~l~i~e-~~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~~~~~~~~~~~ 232 (341)
T cd01372 154 PIQIRE-DSKGNIIIVGLTEVTVNSAQEVMSCLEQGSLSRTTASTAMNSQSSRSHAIFTITLEQTRKNGPIAPMSGDDKN 232 (341)
T ss_pred CceEEE-CCCCCEecCCCEEEEECCHHHHHHHHHHHHHhcccccccCCCccCcCcEEEEEEEEEEecCCccccccccCCC
Confidence 444443 4458889999999999999999999999999999999999999999999999999988763 34
Q ss_pred cEEEeeeEEEecCCCccccCCcchhhhHHHHHHHhhhHHHHHHHHHHHhcCC---CCccCcCchhhhhhhhccCCCccee
Q 001464 719 AILRGSLHLIDLAGSERVDRSEATGDRLREAQHINKSLSALGDVIFALAHKN---PHVPYRNSKLTQVLQSSLGGQAKTL 795 (1073)
Q Consensus 719 ~~~~skL~LVDLAGSER~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~k~---~hVPYRdSKLTrLLqdSLGGnsKTl 795 (1073)
....|+|+||||||||+..++++.|++++|+..||+||.+|++||.+|+.++ .|||||+||||+||+|+||||++|+
T Consensus 233 ~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~in~sl~aL~~vi~al~~~~~~~~~ipyR~S~LT~lL~~~Lgg~s~t~ 312 (341)
T cd01372 233 STLTSKFHFVDLAGSERLKKTGATGDRLKEGISINSGLLALGNVISALGDESKKGSHVPYRDSKLTRLLQDSLGGNSHTL 312 (341)
T ss_pred ceeeEEEEEEECCCCcccccccCchhHhHHHHHHhHHHHHHHHHHHHHHhcCCCCCCCCCcccHHHHHHHHhcCCCceEE
Confidence 5788999999999999999999999999999999999999999999999876 7999999999999999999999999
Q ss_pred eEEecCCCCCCHHHHHHHHHHHhHhcccc
Q 001464 796 MMVQLNPDVDSYSETISTLKFAERVSGVE 824 (1073)
Q Consensus 796 mI~~ISP~~~~~~ETlsTLrFA~Rak~I~ 824 (1073)
||+||||...+++||++||+||+|++.|+
T Consensus 313 ~I~~vsp~~~~~~eTl~tL~~a~~~~~ik 341 (341)
T cd01372 313 MIACVSPADSNFEETLNTLKYANRARNIK 341 (341)
T ss_pred EEEEeCCChhhHHHHHHHHHHHHHhccCC
Confidence 99999999999999999999999999885
No 19
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=100.00 E-value=1.4e-71 Score=625.47 Aligned_cols=320 Identities=43% Similarity=0.681 Sum_probs=287.2
Q ss_pred CCEEEEeecCCCCCcccC--CCccEEEEccCCEEEEeCCCCCCCCCceeeeeceeeCCCCChHHHHhc-hHHHHHHhhcC
Q 001464 494 GNIRVYCRIRPFLPGQSK--KQTTIEYIGENGELVVSNPLKQGKDNHRLFKFNKVFGPEASQEEVFLD-TRPLIRSVLDG 570 (1073)
Q Consensus 494 GnIRV~~RVRP~l~~e~~--~~~~v~~~~~~~~l~v~~p~~~~~~~~k~F~FD~VF~~~atQeeVf~~-~~pLV~svLdG 570 (1073)
.+|+|+|||||+.+.|.. ...++.+ .++..+.+.++ ...+.|.||+||+++++|++||+. +.|+|+++++|
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~v~~-~~~~~v~~~~~-----~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~~~G 75 (325)
T cd01369 2 CNIKVVCRFRPLNEKEELRGSKSIVKF-PGEDTVSIAGS-----DDGKTFSFDRVFPPNTTQEDVYNFVAKPIVDDVLNG 75 (325)
T ss_pred CCeEEEEEcCcCChhhhccCCceEEEE-cCCCEEEecCC-----CCceEEEcCeEECCCCCHHHHHHHHHHHHHHHHHcC
Confidence 489999999999887632 2333443 44456766654 245789999999999999999998 59999999999
Q ss_pred cceeEEeecccCCCCCeeeecCCCCCCCccchhHHHHHHHHHHHHhccCCceEEEEEEEEEEecceeeeccCCCCCCccc
Q 001464 571 YNVCIFAYGQTGSGKTYTMSGPCISSTEDWGVNYRALNDLFEISESRKNSILYEVGVQMVEIYNEQVRDLLSSDGPQRRL 650 (1073)
Q Consensus 571 yN~~IfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~V~DLL~~~~~~~~l 650 (1073)
||+||||||||||||||||+|+.. ...++||+||++++||+.+........|.|.+||+|||||+|+|||++... .+
T Consensus 76 ~n~~i~ayG~tgSGKT~Tm~G~~~-~~~~~Giipr~~~~Lf~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~--~l 152 (325)
T cd01369 76 YNGTIFAYGQTGSGKTYTMEGPPG-DPELKGIIPRIVHDIFEHISSMDENLEFHVKVSYLEIYMEKIRDLLDVSKD--NL 152 (325)
T ss_pred ccceEEEeCCCCCCceEEecCCCC-ccccCChHHHHHHHHHHHHhhccCCceEEEEEEEEEEECCChhhcccCccC--Cc
Confidence 999999999999999999999643 245889999999999999988777788999999999999999999987643 34
Q ss_pred ccccccCCCceecCCcEEEEecCHHHHHHHHHhhhcccccccCCCcCCCCCCccEEEEEEEeEecCCCcEEEeeeEEEec
Q 001464 651 GIWNATLPNGLAVPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSILTIHVRGTDLKNGAILRGSLHLIDL 730 (1073)
Q Consensus 651 ~i~~~~~~g~~vv~~~~~~vvss~eev~~lL~~G~~nR~~~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~~skL~LVDL 730 (1073)
.++. +..+++++.++++..+.+++|++.+|..|.++|++++|.+|..|||||+||+|+|.+.+...+....|+|+||||
T Consensus 153 ~i~~-~~~~~~~v~gl~~~~v~s~~e~~~~i~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~s~l~~VDL 231 (325)
T cd01369 153 QVHE-DKNRGVYVKGLTERFVSSPEEVLEVINEGKSNRAVASTNMNEESSRSHSIFLITLKQENVETGSKKRGKLFLVDL 231 (325)
T ss_pred eEEE-cCCCCEEEcCCEEEEcCCHHHHHHHHHHHHhhcccccCcCCCccccccEEEEEEEEEEecCCCCEEEEEEEEEEC
Confidence 4443 345778889999999999999999999999999999999999999999999999999888888889999999999
Q ss_pred CCCccccCCcchhhhHHHHHHHhhhHHHHHHHHHHHhcCC-CCccCcCchhhhhhhhccCCCcceeeEEecCCCCCCHHH
Q 001464 731 AGSERVDRSEATGDRLREAQHINKSLSALGDVIFALAHKN-PHVPYRNSKLTQVLQSSLGGQAKTLMMVQLNPDVDSYSE 809 (1073)
Q Consensus 731 AGSER~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~k~-~hVPYRdSKLTrLLqdSLGGnsKTlmI~~ISP~~~~~~E 809 (1073)
|||||..++++.|.+++|+..||+||++|++||.+|++++ .|||||+|+||+||+|+|||+|+|+||+||||...+++|
T Consensus 232 AGsE~~~~~~~~~~~~~e~~~in~sl~~L~~vi~aL~~~~~~~vpyR~S~LT~lL~~~L~g~s~t~~I~~vsp~~~~~~e 311 (325)
T cd01369 232 AGSEKVSKTGAEGQTLEEAKKINKSLSALGNVINALTDGKSTHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSYNESE 311 (325)
T ss_pred CCCCcccccCCcchhHHHHHHHhHHHHHHHHHHHHHHcCCCCcCCCccCHHHHHHHHhcCCCCeEEEEEEeCCccccHHH
Confidence 9999999999999999999999999999999999999887 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHhccc
Q 001464 810 TISTLKFAERVSGV 823 (1073)
Q Consensus 810 TlsTLrFA~Rak~I 823 (1073)
|++||+||+|+++|
T Consensus 312 Tl~TL~~a~r~~~i 325 (325)
T cd01369 312 TLSTLRFGARAKTI 325 (325)
T ss_pred HHHHHHHHHHhhcC
Confidence 99999999999876
No 20
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=100.00 E-value=1.8e-71 Score=623.77 Aligned_cols=315 Identities=39% Similarity=0.631 Sum_probs=282.5
Q ss_pred CEEEEeecCCCCCcccCCCccEEEEccCCEEEEeCCCCCCCCCceeeeeceeeCCCCChHHHHhc-hHHHHHHhhcCcce
Q 001464 495 NIRVYCRIRPFLPGQSKKQTTIEYIGENGELVVSNPLKQGKDNHRLFKFNKVFGPEASQEEVFLD-TRPLIRSVLDGYNV 573 (1073)
Q Consensus 495 nIRV~~RVRP~l~~e~~~~~~v~~~~~~~~l~v~~p~~~~~~~~k~F~FD~VF~~~atQeeVf~~-~~pLV~svLdGyN~ 573 (1073)
||+|||||||+...|......+..+.+++.+++.+| ...+.|.||+||+++++|++||+. +.|+|+++++|||+
T Consensus 1 ~V~V~vRvRP~~~~e~~~~~~~~~~~~~~~v~~~~~-----~~~~~f~fd~vf~~~~~q~~vy~~~~~p~v~~~l~G~n~ 75 (321)
T cd01374 1 KIKVSVRVRPLNPRESDNEQVAWSIDNDNTISLEES-----TPGQSFTFDRVFGGESTNREVYERIAKPVVRSALEGYNG 75 (321)
T ss_pred CeEEEEEcCcCCcccccCCcceEEECCCCEEEEcCC-----CCCeEEecCeEECCCCCHHHHHHHHHHHHHHHHHCCCce
Confidence 699999999999887654444444555556666654 345789999999999999999998 59999999999999
Q ss_pred eEEeecccCCCCCeeeecCCCCCCCccchhHHHHHHHHHHHHhccCCceEEEEEEEEEEecceeeeccCCCCCCcccccc
Q 001464 574 CIFAYGQTGSGKTYTMSGPCISSTEDWGVNYRALNDLFEISESRKNSILYEVGVQMVEIYNEQVRDLLSSDGPQRRLGIW 653 (1073)
Q Consensus 574 ~IfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~V~DLL~~~~~~~~l~i~ 653 (1073)
||||||||||||||||+|+ ..++||+||++++||..+.... ...|.|++||+|||||+|+|||++.. ..+.+.
T Consensus 76 ~i~ayG~tgSGKT~T~~G~----~~~~Gli~r~~~~lf~~~~~~~-~~~~~v~~S~~Eiy~e~v~DLL~~~~--~~l~i~ 148 (321)
T cd01374 76 TIFAYGQTSSGKTFTMSGD----EQEPGIIPLAVRDIFQRIQDTP-DREFLLRVSYLEIYNEKIKDLLSPSP--QELRIR 148 (321)
T ss_pred eEEeecCCCCCCceeccCC----CCCCchHHHHHHHHHHHHhccc-CceEEEEEEEEEEEcCEeEEccCCCC--CCceEE
Confidence 9999999999999999995 4788999999999999887654 56899999999999999999998875 344555
Q ss_pred cccCCCceecCCcEEEEecCHHHHHHHHHhhhcccccccCCCcCCCCCCccEEEEEEEeEecCC---CcEEEeeeEEEec
Q 001464 654 NATLPNGLAVPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSILTIHVRGTDLKN---GAILRGSLHLIDL 730 (1073)
Q Consensus 654 ~~~~~g~~vv~~~~~~vvss~eev~~lL~~G~~nR~~~sT~~N~~SSRSH~IftI~V~~~~~~~---~~~~~skL~LVDL 730 (1073)
.+. .+++++.++++..+.+++|++.+|..|.++|++++|.+|.+|||||+||+|+|.+.+... +....|+|+||||
T Consensus 149 ~~~-~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~~s~l~~vDL 227 (321)
T cd01374 149 EDP-NKGVVVAGLTEEIVTSPEHLLQLIARGEKNRHVGETDFNERSSRSHTIFQLTIESRERGDSESGTVRVSTLNLIDL 227 (321)
T ss_pred ECC-CCCEEeCCceEEEeCCHHHHHHHHHHHHhccccccCcCCCccccccEEEEEEEEEEecCCCCCCcEEEEEEEEEEC
Confidence 433 467889999999999999999999999999999999999999999999999999887655 6778899999999
Q ss_pred CCCccccCCcchhhhHHHHHHHhhhHHHHHHHHHHHhcCC--CCccCcCchhhhhhhhccCCCcceeeEEecCCCCCCHH
Q 001464 731 AGSERVDRSEATGDRLREAQHINKSLSALGDVIFALAHKN--PHVPYRNSKLTQVLQSSLGGQAKTLMMVQLNPDVDSYS 808 (1073)
Q Consensus 731 AGSER~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~k~--~hVPYRdSKLTrLLqdSLGGnsKTlmI~~ISP~~~~~~ 808 (1073)
|||||..+.+ .+.+++|+.+||+||.+|++||.+|+.++ .|||||+||||+||+++|||||+|+|||||||...+++
T Consensus 228 AGsE~~~~~~-~~~~~~e~~~iN~Sl~~L~~vi~al~~~~~~~~vpyR~SkLT~lL~~~L~g~s~t~~i~~vsp~~~~~~ 306 (321)
T cd01374 228 AGSERASQTG-AGERRKEGSFINKSLLTLGTVISKLSEGKNSGHIPYRDSKLTRILQPSLSGNARTAIICTISPASSHVE 306 (321)
T ss_pred CCCCccccCC-CCccccccchhhhHHHHHHHHHHHHHhcCCCCcCCCcCCHHHHHHHHhcCCCceEEEEEEeCCccccHH
Confidence 9999999888 89999999999999999999999999885 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHhccc
Q 001464 809 ETISTLKFAERVSGV 823 (1073)
Q Consensus 809 ETlsTLrFA~Rak~I 823 (1073)
||++||+||+|++.|
T Consensus 307 eTl~TL~~a~r~~~i 321 (321)
T cd01374 307 ETLNTLKFASRAKKV 321 (321)
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999999875
No 21
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=100.00 E-value=9.6e-71 Score=621.12 Aligned_cols=320 Identities=42% Similarity=0.620 Sum_probs=279.4
Q ss_pred CEEEEeecCCCCCcccCCCccEEEEccCCEEEEeCCCCC------CCCCceeeeeceeeCCCCChHHHHhc-hHHHHHHh
Q 001464 495 NIRVYCRIRPFLPGQSKKQTTIEYIGENGELVVSNPLKQ------GKDNHRLFKFNKVFGPEASQEEVFLD-TRPLIRSV 567 (1073)
Q Consensus 495 nIRV~~RVRP~l~~e~~~~~~v~~~~~~~~l~v~~p~~~------~~~~~k~F~FD~VF~~~atQeeVf~~-~~pLV~sv 567 (1073)
.|+|+|||||+...+. ..+.+..++..+.+..|... .....+.|.||+||++ ++|++||+. +.|+|+++
T Consensus 1 ~i~V~vRvRP~~~~~~---~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~f~FD~vf~~-~~q~~vy~~~~~p~v~~~ 76 (334)
T cd01375 1 TIQVFVRVRPTPTKQG---SSIKLGPDGKSVSSNLPKDLVRGVVNNQQEDFSFKFDGVFHN-ASQEEVYETVAKPVVDSA 76 (334)
T ss_pred CeEEEEECCCCCCCCC---ccEEEcCCCCEEEEecccccccccccCCcCceEEEcCcccCC-CCHHHHHHHHHHHHHHHH
Confidence 4899999999987433 23445555555566554321 1123567999999999 999999998 58999999
Q ss_pred hcCcceeEEeecccCCCCCeeeecCCCCCCCccchhHHHHHHHHHHHHhccCCceEEEEEEEEEEecceeeeccCCCC--
Q 001464 568 LDGYNVCIFAYGQTGSGKTYTMSGPCISSTEDWGVNYRALNDLFEISESRKNSILYEVGVQMVEIYNEQVRDLLSSDG-- 645 (1073)
Q Consensus 568 LdGyN~~IfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~V~DLL~~~~-- 645 (1073)
++|||+||||||||||||||||+|+.. ...++||+||++++||+.++... +..|.|.+||+|||||+|+|||++..
T Consensus 77 ~~G~n~~i~ayG~tgSGKTyTm~G~~~-~~~~~Glipr~~~~lf~~~~~~~-~~~~~v~~S~~Eiy~e~v~DLL~~~~~~ 154 (334)
T cd01375 77 LDGYNGTIFAYGQTGAGKTFTMTGGTE-SYKDRGLIPRALEQVFREVAMRA-TKTYTVHVSYLEIYNEQLYDLLGDTPEA 154 (334)
T ss_pred hCCCccceeeecCCCCCCeEEccCCCC-cccCCchHHHHHHHHHHHHHhcc-CcceEEEEEEEEEECCEeecCCCCCccc
Confidence 999999999999999999999999743 45689999999999999987654 56799999999999999999999874
Q ss_pred --CCcccccccccCCCceecCCcEEEEecCHHHHHHHHHhhhcccccccCCCcCCCCCCccEEEEEEEeEe--cCCCcEE
Q 001464 646 --PQRRLGIWNATLPNGLAVPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSILTIHVRGTD--LKNGAIL 721 (1073)
Q Consensus 646 --~~~~l~i~~~~~~g~~vv~~~~~~vvss~eev~~lL~~G~~nR~~~sT~~N~~SSRSH~IftI~V~~~~--~~~~~~~ 721 (1073)
....+.+..+ ..+++++.++++..+.+++|++.++..|.++|.+++|.+|..|||||+||+|+|.+.+ ..++...
T Consensus 155 ~~~~~~l~i~e~-~~~~~~v~gl~~~~v~s~~e~~~~~~~g~~~R~~~~t~~n~~sSRSH~i~~l~v~~~~~~~~~~~~~ 233 (334)
T cd01375 155 LESLPAVTILED-SEQNIHVKGLSLHSATTEEEALNLLFLGETNRTIAETSMNQASSRSHCIFTIHLESRSREAGSEVVR 233 (334)
T ss_pred cccCCceEEEEc-CCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccCcCcCCcCcCeEEEEEEEEEEecCCCCCceE
Confidence 2234455443 3577889999999999999999999999999999999999999999999999999873 3445678
Q ss_pred EeeeEEEecCCCccccCCcchhhhHHHHHHHhhhHHHHHHHHHHHhcCC-CCccCcCchhhhhhhhccCCCcceeeEEec
Q 001464 722 RGSLHLIDLAGSERVDRSEATGDRLREAQHINKSLSALGDVIFALAHKN-PHVPYRNSKLTQVLQSSLGGQAKTLMMVQL 800 (1073)
Q Consensus 722 ~skL~LVDLAGSER~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~k~-~hVPYRdSKLTrLLqdSLGGnsKTlmI~~I 800 (1073)
.|+|+|||||||||..+++..+.+++|+..||+||++|++||.+|+.++ .|||||+||||+||+|+|||||+|+||+||
T Consensus 234 ~s~l~~VDLAGsEr~~~~~~~~~~~~e~~~iN~SL~~L~~vi~~l~~~~~~~ipyRdSkLT~lL~d~Lgg~~~t~~I~~v 313 (334)
T cd01375 234 LSKLNLVDLAGSERVSKTGVSGQVLKEAKYINKSLSFLEQVINALSEKARTHVPYRNSKLTHVLRDSLGGNCKTVMLATI 313 (334)
T ss_pred EEEEEEEECCCCCccccccCchhhhhhhhhhhhhHHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHhcCCCceEEEEEEe
Confidence 8999999999999999999999999999999999999999999999988 999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhHhc
Q 001464 801 NPDVDSYSETISTLKFAERVS 821 (1073)
Q Consensus 801 SP~~~~~~ETlsTLrFA~Rak 821 (1073)
||...+++||++||+||+|++
T Consensus 314 sp~~~~~~eTl~TL~fa~r~~ 334 (334)
T cd01375 314 WVEPSNLDETLSTLRFAQRVA 334 (334)
T ss_pred CCchhhHHHHHHHHHHHHhcC
Confidence 999999999999999999984
No 22
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=100.00 E-value=1.9e-67 Score=591.59 Aligned_cols=322 Identities=48% Similarity=0.755 Sum_probs=287.3
Q ss_pred CEEEEeecCCCCCcccCCCccEEEEccCCEEEEeCCCCCCCCCceeeeeceeeCCCCChHHHHhc-hHHHHHHhhcCcce
Q 001464 495 NIRVYCRIRPFLPGQSKKQTTIEYIGENGELVVSNPLKQGKDNHRLFKFNKVFGPEASQEEVFLD-TRPLIRSVLDGYNV 573 (1073)
Q Consensus 495 nIRV~~RVRP~l~~e~~~~~~v~~~~~~~~l~v~~p~~~~~~~~k~F~FD~VF~~~atQeeVf~~-~~pLV~svLdGyN~ 573 (1073)
+|+|||||||+.+.+......+..+.+++.+.+.+|........+.|.||+||+++++|++||+. +.|+|+++++|+|+
T Consensus 1 ~i~V~vRvrP~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~v~~~~~~~~v~~~~~G~~~ 80 (328)
T cd00106 1 NIRVVVRIRPLNGRESKSEESCITVDDNKTVTLTPPKDGRKAGPKSFTFDHVFDPNSTQEDVYETTAKPLVESVLEGYNG 80 (328)
T ss_pred CeEEEEEcCCCCcccccCCCcEEEECCCCEEEEecCccccCcCceEEECCeEEcCCCCHHHHHHHHHHHHHHHHhCCCce
Confidence 69999999999877643444444444557788877654334456899999999999999999998 58999999999999
Q ss_pred eEEeecccCCCCCeeeecCCCCCCCccchhHHHHHHHHHHHHhccC-CceEEEEEEEEEEecceeeeccCCCCCCccccc
Q 001464 574 CIFAYGQTGSGKTYTMSGPCISSTEDWGVNYRALNDLFEISESRKN-SILYEVGVQMVEIYNEQVRDLLSSDGPQRRLGI 652 (1073)
Q Consensus 574 ~IfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~~~~-~~~~~V~vS~lEIYnE~V~DLL~~~~~~~~l~i 652 (1073)
||||||||||||||||+|+ ..++||+||++++||..+..... ...|.|.+||+|||+|+|+|||++......+.+
T Consensus 81 ~i~~yG~tgSGKT~tl~G~----~~~~Gli~~~~~~Lf~~~~~~~~~~~~~~v~~S~~Ei~~e~v~DLL~~~~~~~~l~i 156 (328)
T cd00106 81 TIFAYGQTGSGKTYTMFGS----PKDPGIIPRALEDLFNLIDERKEKNKSFSVSVSYLEIYNEKVYDLLSPEPPSKPLSL 156 (328)
T ss_pred eEEEecCCCCCCeEEecCC----CCCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCEeEECCCCCCCCCCcEE
Confidence 9999999999999999995 47899999999999998876653 567999999999999999999998643445555
Q ss_pred ccccCCCceecCCcEEEEecCHHHHHHHHHhhhcccccccCCCcCCCCCCccEEEEEEEeEecCCCc--EEEeeeEEEec
Q 001464 653 WNATLPNGLAVPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSILTIHVRGTDLKNGA--ILRGSLHLIDL 730 (1073)
Q Consensus 653 ~~~~~~g~~vv~~~~~~vvss~eev~~lL~~G~~nR~~~sT~~N~~SSRSH~IftI~V~~~~~~~~~--~~~skL~LVDL 730 (1073)
+.+. .++.++.+++...+.+++|++.++..|.++|.+++|.+|..|||||+||+|+|...+..... ...|+|+||||
T Consensus 157 ~~~~-~~~~~v~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~s~l~~VDL 235 (328)
T cd00106 157 REDP-KGGVYVKGLTEVEVGSAEDALSLLQKGLKNRTTASTAMNERSSRSHAIFTIHVEQRNTTNDGRSIKSSKLNLVDL 235 (328)
T ss_pred EEcC-CCCEEEeCCEEEEeCCHHHHHHHHHHHHhhcCcccCcCCCCcCcCcEEEEEEEEEEecCCCCccEEEEEEEEEEC
Confidence 5433 37788999999999999999999999999999999999999999999999999998876654 88999999999
Q ss_pred CCCccccCCcchhhhHHHHHHHhhhHHHHHHHHHHHhcCC--CCccCcCchhhhhhhhccCCCcceeeEEecCCCCCCHH
Q 001464 731 AGSERVDRSEATGDRLREAQHINKSLSALGDVIFALAHKN--PHVPYRNSKLTQVLQSSLGGQAKTLMMVQLNPDVDSYS 808 (1073)
Q Consensus 731 AGSER~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~k~--~hVPYRdSKLTrLLqdSLGGnsKTlmI~~ISP~~~~~~ 808 (1073)
||+|+....+..+.+++|+..||+||.+|++||.+|+.++ .|||||+||||+||||+|||+++|+||+||+|...+++
T Consensus 236 aGse~~~~~~~~~~~~~e~~~in~sl~~L~~vl~~l~~~~~~~~ip~r~SkLT~lL~~~l~g~~~t~~I~~vsp~~~~~~ 315 (328)
T cd00106 236 AGSERAKKTGAEGDRLKEAKNINKSLSALGNVISALSSGQKKKHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSSENYD 315 (328)
T ss_pred CCCCcccccCCchhhhHhHHhhhhhHHHHHHHHHHHHhcCCCCcCCCcCcHHHHHHHHhcCCCCeEEEEEEeCCchhhHH
Confidence 9999999999999999999999999999999999999988 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHhc
Q 001464 809 ETISTLKFAERVS 821 (1073)
Q Consensus 809 ETlsTLrFA~Rak 821 (1073)
||++||+||+|++
T Consensus 316 eTl~tL~~a~r~~ 328 (328)
T cd00106 316 ETLSTLRFASRAK 328 (328)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999999985
No 23
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=100.00 E-value=1e-66 Score=587.65 Aligned_cols=326 Identities=46% Similarity=0.722 Sum_probs=290.5
Q ss_pred CEEEEeecCCCCCcccC--CCccEEEEccCC-EEEEeCCCCCCCCCceeeeeceeeCCCCChHHHHhc-hHHHHHHhhcC
Q 001464 495 NIRVYCRIRPFLPGQSK--KQTTIEYIGENG-ELVVSNPLKQGKDNHRLFKFNKVFGPEASQEEVFLD-TRPLIRSVLDG 570 (1073)
Q Consensus 495 nIRV~~RVRP~l~~e~~--~~~~v~~~~~~~-~l~v~~p~~~~~~~~k~F~FD~VF~~~atQeeVf~~-~~pLV~svLdG 570 (1073)
+|+|+|||||+...+.. ....+.+.+.++ .+++.++.. ....+.|.||+||+++++|++||+. +.|+|+++++|
T Consensus 1 ~v~v~vRvrP~~~~e~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~f~fD~vf~~~~~q~~v~~~~~~p~v~~~~~G 78 (335)
T smart00129 1 NIRVVVRVRPLNKREKSRKSPSVVPFDDKDGKTLNVNSPKN--RKEEKKFTFDKVFGATASQEDVFEETAAPLVDSVLEG 78 (335)
T ss_pred CcEEEEEcCcCCccchhcCCceEEEEcCCCCCEEEEeCCCC--CCCCeEEecCEEECCCCChHHHHHHHHHHHHHHHhcC
Confidence 69999999999887643 344555554443 566665532 2345789999999999999999998 58999999999
Q ss_pred cceeEEeecccCCCCCeeeecCCCCCCCccchhHHHHHHHHHHHHhccCCceEEEEEEEEEEecceeeeccCCCCCCccc
Q 001464 571 YNVCIFAYGQTGSGKTYTMSGPCISSTEDWGVNYRALNDLFEISESRKNSILYEVGVQMVEIYNEQVRDLLSSDGPQRRL 650 (1073)
Q Consensus 571 yN~~IfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~V~DLL~~~~~~~~l 650 (1073)
+|+||||||+|||||||||+|+ ..++||+||++++||..+........|.|+|||+|||+|+|+|||++.. ..+
T Consensus 79 ~~~~i~~yG~tgSGKT~tl~G~----~~~~Gli~~~~~~Lf~~~~~~~~~~~~~v~~S~~ei~~e~v~DLL~~~~--~~l 152 (335)
T smart00129 79 YNATIFAYGQTGSGKTYTMSGT----PDSPGIIPRALKDLFEKIDKLEEGWQFQVKVSYLEIYNEKIRDLLNPSP--KKL 152 (335)
T ss_pred CceeEEEeCCCCCCCceEecCC----CCCCCHHHHHHHHHHHHhhhcccCceEEEEEEEEEEECCEEEECcCCCC--CCc
Confidence 9999999999999999999995 4678999999999999988777678899999999999999999998763 344
Q ss_pred ccccccCCCceecCCcEEEEecCHHHHHHHHHhhhcccccccCCCcCCCCCCccEEEEEEEeE--ecCCCcEEEeeeEEE
Q 001464 651 GIWNATLPNGLAVPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSILTIHVRGT--DLKNGAILRGSLHLI 728 (1073)
Q Consensus 651 ~i~~~~~~g~~vv~~~~~~vvss~eev~~lL~~G~~nR~~~sT~~N~~SSRSH~IftI~V~~~--~~~~~~~~~skL~LV 728 (1073)
.+.. +..+++++.++++..+.+++|+..++..|.++|.+++|.+|..|||||+||+|+|.+. +...+....|+|+||
T Consensus 153 ~i~~-~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRsH~i~~l~v~~~~~~~~~~~~~~s~l~~V 231 (335)
T smart00129 153 EIRE-DKKGGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVESKIKNSSSGSGKASKLNLV 231 (335)
T ss_pred EEEE-CCCCCEEecCCEEEEeCCHHHHHHHHHHHHhccccccCCCCCCCCcceEEEEEEEEEEecCCCCCCEEEEEEEEE
Confidence 5544 3457889999999999999999999999999999999999999999999999999976 455667889999999
Q ss_pred ecCCCccccCCcchhhhHHHHHHHhhhHHHHHHHHHHHhc--CCCCccCcCchhhhhhhhccCCCcceeeEEecCCCCCC
Q 001464 729 DLAGSERVDRSEATGDRLREAQHINKSLSALGDVIFALAH--KNPHVPYRNSKLTQVLQSSLGGQAKTLMMVQLNPDVDS 806 (1073)
Q Consensus 729 DLAGSER~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~--k~~hVPYRdSKLTrLLqdSLGGnsKTlmI~~ISP~~~~ 806 (1073)
||||+||..+.++.|.+++|+..||+||.+|++||.+|++ +..|||||+|+||+||+++|||+++|+||+||||...+
T Consensus 232 DLaGse~~~~~~~~~~~~~e~~~in~sl~~L~~~l~~l~~~~~~~~ip~r~S~LT~lL~~~L~g~~~~~~i~~vsp~~~~ 311 (335)
T smart00129 232 DLAGSERASKTGAEGDRLKEAGNINKSLSALGNVINALADGQKSRHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSLSN 311 (335)
T ss_pred ECCCCCccccccChhHHHHhhchhhhHHHHHHHHHHHHHhcCCCCCCCCcCcHhHHHHHHHcCCCCeEEEEEEcCCCccc
Confidence 9999999999999999999999999999999999999998 67799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHhccccccccc
Q 001464 807 YSETISTLKFAERVSGVELGAAR 829 (1073)
Q Consensus 807 ~~ETlsTLrFA~Rak~I~~~~~k 829 (1073)
++||++||+||+++++|+++|.+
T Consensus 312 ~~eTl~tL~~a~~~~~i~~~p~~ 334 (335)
T smart00129 312 LEETLSTLRFASRAKEIKNKAIV 334 (335)
T ss_pred hHHHHHHHHHHHHHhhcccCCCc
Confidence 99999999999999999988764
No 24
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=100.00 E-value=1.4e-67 Score=594.18 Aligned_cols=321 Identities=43% Similarity=0.678 Sum_probs=275.8
Q ss_pred ecCCCCCcccCCCccE--EEEccCCEEEEeCCCCCCCCCceeeeeceeeCCCCChHHHHhc-hHHHHHHhhcCcceeEEe
Q 001464 501 RIRPFLPGQSKKQTTI--EYIGENGELVVSNPLKQGKDNHRLFKFNKVFGPEASQEEVFLD-TRPLIRSVLDGYNVCIFA 577 (1073)
Q Consensus 501 RVRP~l~~e~~~~~~v--~~~~~~~~l~v~~p~~~~~~~~k~F~FD~VF~~~atQeeVf~~-~~pLV~svLdGyN~~IfA 577 (1073)
||||+++.|....... ......................+.|.||+||+++++|++||+. +.|+|+++|+|||+||||
T Consensus 1 RvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~l~G~n~~i~a 80 (335)
T PF00225_consen 1 RVRPLNESEKESSAESIVSVDNQDSNQNKQSVNSNNSQKEKSFRFDRVFDEDATQEDVYEEVVSPLVDSVLDGYNATIFA 80 (335)
T ss_dssp EEES-CHHHHHTTTEBCEEEETTETEEEEEETTEEETTEEEEEEESEEEETTSTHHHHHHHHTHHHHHHHHTT-EEEEEE
T ss_pred CcCCCCHHHHhCCCcEEEEecCCccccccccccccCCCCceEEEcCeEECCCCCHHHHHHHHHHHHHHHhhcCCceEEEe
Confidence 8999998876544332 2221111111111111223356789999999999999999998 699999999999999999
Q ss_pred ecccCCCCCeeeecCCCCCCCccchhHHHHHHHHHHHHhccCC--ceEEEEEEEEEEecceeeeccCCCC--CCcccccc
Q 001464 578 YGQTGSGKTYTMSGPCISSTEDWGVNYRALNDLFEISESRKNS--ILYEVGVQMVEIYNEQVRDLLSSDG--PQRRLGIW 653 (1073)
Q Consensus 578 YGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~~~~~--~~~~V~vS~lEIYnE~V~DLL~~~~--~~~~l~i~ 653 (1073)
||||||||||||+|+ ....++||+||++++||..+...... +.|.|+|||+|||||+|+|||++.. ....+.++
T Consensus 81 yG~tgSGKT~Tm~G~--~~~~~~Gli~~~~~~lf~~~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~~l~i~ 158 (335)
T PF00225_consen 81 YGQTGSGKTYTMFGS--NDPSEPGLIPRALRDLFSQIEERKEKSGYEFSVSVSYLEIYNEKVYDLLSPNNSKSRKPLKIR 158 (335)
T ss_dssp EESTTSSHHHHHTBS--TSTTTBSHHHHHHHHHHHHHHHHTTTSTEEEEEEEEEEEEETTEEEETTSTTSSSTTSEBEEE
T ss_pred ecccccccccccccc--ccccccchhhhHHHHHhhhhccccccccccccccccchhhhhhhhhhhcCcccccccccccee
Confidence 999999999999995 23678999999999999998876654 7899999999999999999999874 33456777
Q ss_pred cccCCCceecCCcEEEEecCHHHHHHHHHhhhcccccccCCCcCCCCCCccEEEEEEEeEecCCCc----EEEeeeEEEe
Q 001464 654 NATLPNGLAVPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSILTIHVRGTDLKNGA----ILRGSLHLID 729 (1073)
Q Consensus 654 ~~~~~g~~vv~~~~~~vvss~eev~~lL~~G~~nR~~~sT~~N~~SSRSH~IftI~V~~~~~~~~~----~~~skL~LVD 729 (1073)
.+...|.+.+.++....+.++++++.+|..|.++|.+++|.+|..|||||+||+|+|.+.+...+. ...|+|+|||
T Consensus 159 ~~~~~g~~~i~~l~~~~v~s~~~~~~~l~~~~~~R~~~~t~~n~~sSRSH~i~~i~v~~~~~~~~~~~~~~~~s~l~~vD 238 (335)
T PF00225_consen 159 EDSNKGSVYIKGLTEVEVKSAEEALQLLKKGQKNRRTASTKMNARSSRSHAIFTIHVEQKDRDPSDDEESVKHSRLTFVD 238 (335)
T ss_dssp EETTTEEEEETTSEEEEESSHHHHHHHHHHHHHHHTCTSSSCTHHGGGSEEEEEEEEEEEETTTTTEEEEEEEEEEEEEE
T ss_pred eccccccceeeccccccccccccccccccchhhccccccccccccccccccccccccccccccccccccceeecceeeee
Confidence 666555689999999999999999999999999999999999999999999999999998876654 4789999999
Q ss_pred cCCCccccCCcch-hhhHHHHHHHhhhHHHHHHHHHHHhcC--CCCccCcCchhhhhhhhccCCCcceeeEEecCCCCCC
Q 001464 730 LAGSERVDRSEAT-GDRLREAQHINKSLSALGDVIFALAHK--NPHVPYRNSKLTQVLQSSLGGQAKTLMMVQLNPDVDS 806 (1073)
Q Consensus 730 LAGSER~~ks~~~-g~rlkEa~~INkSLsaLg~VI~aLa~k--~~hVPYRdSKLTrLLqdSLGGnsKTlmI~~ISP~~~~ 806 (1073)
|||+|+..+.... +.+++|+..||+||.+|++||.+|+.+ ..|||||+||||+||+|+|||||+|+||+||||...+
T Consensus 239 LaGsE~~~~~~~~~~~~~~e~~~in~Sl~~L~~vi~~L~~~~~~~~vpyr~SkLT~lL~d~l~g~s~t~~I~~vsp~~~~ 318 (335)
T PF00225_consen 239 LAGSERLKKSGASDGQRLKESSNINKSLSALGNVIRALAQGSKQSHVPYRDSKLTRLLKDSLGGNSKTILIVCVSPSSED 318 (335)
T ss_dssp EEESTGGCGCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTSTSSSCGGGSHHHHHTGGGTSSSSEEEEEEEE-SBGGG
T ss_pred cccccccccccccccccccccceecchhhhhhhhHhhhhccccchhhhhhcccccceecccccccccceeEEEcCCcccc
Confidence 9999999988864 889999999999999999999999998 8999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHhccc
Q 001464 807 YSETISTLKFAERVSGV 823 (1073)
Q Consensus 807 ~~ETlsTLrFA~Rak~I 823 (1073)
++||++||+||++++.|
T Consensus 319 ~~eTl~tL~fa~~~~~I 335 (335)
T PF00225_consen 319 YEETLSTLRFASRAREI 335 (335)
T ss_dssp HHHHHHHHHHHHHHTTE
T ss_pred HHHHHHHHHHHHHHcCC
Confidence 99999999999999976
No 25
>KOG0246 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=3.9e-63 Score=561.78 Aligned_cols=325 Identities=35% Similarity=0.500 Sum_probs=279.1
Q ss_pred CCEEEEeecCCCCCcccCC-CccEEEEccCCEEEEeCCCCCCCC-----CceeeeeceeeCCCCChHHHHhc-hHHHHHH
Q 001464 494 GNIRVYCRIRPFLPGQSKK-QTTIEYIGENGELVVSNPLKQGKD-----NHRLFKFNKVFGPEASQEEVFLD-TRPLIRS 566 (1073)
Q Consensus 494 GnIRV~~RVRP~l~~e~~~-~~~v~~~~~~~~l~v~~p~~~~~~-----~~k~F~FD~VF~~~atQeeVf~~-~~pLV~s 566 (1073)
..|-|+||-||++..|... ...|..++..+.++|..|. ...+ ..+.|.||++||..++++.||.. ++|||..
T Consensus 208 hrI~VCVRKRPLnkkE~~~keiDvisvps~~~l~vHEpk-~kVDLtkYlEn~~F~FDyaFDe~~sNe~VYrfTa~PlV~~ 286 (676)
T KOG0246|consen 208 HRICVCVRKRPLNKKELTKKEIDVISVPSKNVLVVHEPK-LKVDLTKYLENQKFRFDYAFDESASNELVYRFTAKPLVKT 286 (676)
T ss_pred ceEEEEeecCCCCchhccccccceEeccccceEEeeccc-cccchHHHHhhceEEEeeecccccchHHHHHHhhhHHHHH
Confidence 4699999999999877543 3344455556666666653 2221 34679999999999999999987 6999999
Q ss_pred hhcCcceeEEeecccCCCCCeeeecCCCCCC--CccchhHHHHHHHHHHHHhc-cCCceEEEEEEEEEEecceeeeccCC
Q 001464 567 VLDGYNVCIFAYGQTGSGKTYTMSGPCISST--EDWGVNYRALNDLFEISESR-KNSILYEVGVQMVEIYNEQVRDLLSS 643 (1073)
Q Consensus 567 vLdGyN~~IfAYGQTGSGKTyTM~G~~~~~~--~~~GIipRal~~LF~~~~~~-~~~~~~~V~vS~lEIYnE~V~DLL~~ 643 (1073)
+|+|--+|+||||||||||||||-|...+.. ...||..++.+|+|..+... -....+.|+++|+|||+.+|||||+.
T Consensus 287 IF~~G~ATCFAYGQTGSGKT~TMggdfsgk~q~~s~giya~aa~Dvf~~L~~p~Y~~~~l~v~~tFFEIYgGKvfDLL~~ 366 (676)
T KOG0246|consen 287 IFEGGMATCFAYGQTGSGKTYTMGGDFSGKAQDCSKGIYALAARDVFRLLRQPTYRKLDLKVYVTFFEIYGGKVYDLLND 366 (676)
T ss_pred HHhCCceeeeeeccCCCCceeecccccCcccccccccchhhhhhHHHHHhcccchhhcceEEEEEEEEEeCcchhhhhcc
Confidence 9999999999999999999999999765433 34599999999999987652 34567899999999999999999987
Q ss_pred CCCCcccccccccCCCceecCCcEEEEecCHHHHHHHHHhhhcccccccCCCcCCCCCCccEEEEEEEeEecCCCcEEEe
Q 001464 644 DGPQRRLGIWNATLPNGLAVPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSILTIHVRGTDLKNGAILRG 723 (1073)
Q Consensus 644 ~~~~~~l~i~~~~~~g~~vv~~~~~~vvss~eev~~lL~~G~~nR~~~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~~s 723 (1073)
.. ++.+. ++....+.+.++.+..|...+||++||+.|+.-|+.+.|..|+.|||||+||+|.+... .+...+|
T Consensus 367 k~---KLrvL-EDg~QQVqVVGLqE~~v~~~eeVl~lIe~Gns~RtsG~TsANs~SSRSHAvfQIilr~~---~~~k~hG 439 (676)
T KOG0246|consen 367 KK---KLRVL-EDGNQQVQVVGLQEEEVSGVEEVLELIEKGNSCRTSGQTSANSNSSRSHAVFQIILRKH---GEFKLHG 439 (676)
T ss_pred cc---ceEEe-ecCCceEEEeeceeeeccCHHHHHHHHHhcccccccCcccCcccccccceeEeeeeecC---CcceeEe
Confidence 43 34443 34456778889999999999999999999999999999999999999999999999643 2357899
Q ss_pred eeEEEecCCCcc-ccCCcchhhhHHHHHHHhhhHHHHHHHHHHHhcCCCCccCcCchhhhhhhhccCC-CcceeeEEecC
Q 001464 724 SLHLIDLAGSER-VDRSEATGDRLREAQHINKSLSALGDVIFALAHKNPHVPYRNSKLTQVLQSSLGG-QAKTLMMVQLN 801 (1073)
Q Consensus 724 kL~LVDLAGSER-~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~k~~hVPYRdSKLTrLLqdSLGG-nsKTlmI~~IS 801 (1073)
++.||||||+|| ++.+.+..++..||+.|||||+||..||.||.+.+.|+|||.||||++|+|||-| |++|+||+|||
T Consensus 440 KfSlIDLAGnERGaDts~adRqtRlEGAEINKSLLALKECIRaLg~nk~H~PFR~SKLTqVLRDSFIGenSrTcMIA~IS 519 (676)
T KOG0246|consen 440 KFSLIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGRNKSHLPFRGSKLTQVLRDSFIGENSRTCMIATIS 519 (676)
T ss_pred EEEEEEccCCccCCcccccchhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhHHHHHHHhhcCCCCceEEEEEeC
Confidence 999999999999 5666777788899999999999999999999999999999999999999999988 99999999999
Q ss_pred CCCCCHHHHHHHHHHHhHhcccccc
Q 001464 802 PDVDSYSETISTLKFAERVSGVELG 826 (1073)
Q Consensus 802 P~~~~~~ETlsTLrFA~Rak~I~~~ 826 (1073)
|...+++.||+|||||.|||.....
T Consensus 520 Pg~~ScEhTLNTLRYAdRVKeLsv~ 544 (676)
T KOG0246|consen 520 PGISSCEHTLNTLRYADRVKELSVD 544 (676)
T ss_pred CCcchhhhhHHHHHHHHHHHhhcCC
Confidence 9999999999999999999987544
No 26
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.3e-63 Score=579.25 Aligned_cols=331 Identities=38% Similarity=0.614 Sum_probs=287.6
Q ss_pred hccCCEEEEeecCCCCCcccCCCccEEEEccCCEEEEeCCCC-------CCCCCceeeeeceeeCCCCChHHHHhc-hHH
Q 001464 491 DLKGNIRVYCRIRPFLPGQSKKQTTIEYIGENGELVVSNPLK-------QGKDNHRLFKFNKVFGPEASQEEVFLD-TRP 562 (1073)
Q Consensus 491 eLKGnIRV~~RVRP~l~~e~~~~~~v~~~~~~~~l~v~~p~~-------~~~~~~k~F~FD~VF~~~atQeeVf~~-~~p 562 (1073)
+++..|.|||||||+.+ ..+...++.++ ++.++++..|.. .+....+.|.|.+||+|+++|.+||.. +.|
T Consensus 28 ~~~d~v~v~~rvrP~~~-~~~~~g~l~v~-n~~tivL~~P~d~~~~~~~n~~q~e~~fsFt~VF~p~~tQ~dvF~~~~~p 105 (809)
T KOG0247|consen 28 ESKDPVLVVCRVRPLSD-ASEDEGCLRVI-NEETIVLETPEDSFARRSVNGGQMEKKFSFTKVFGPSVTQADVFDTTVAP 105 (809)
T ss_pred hhhcchheeEeecCCCC-CccccceEEEe-ccceeEeeCcHHHHhhhccCccceeeEeeeeeecCCCccHHHHHHHHhHH
Confidence 45789999999999986 33445566655 445666655532 233345789999999999999999998 599
Q ss_pred HHHHhhcCcceeEEeecccCCCCCeeeecCCCCCCCccchhHHHHHHHHHHHHhc-------------------------
Q 001464 563 LIRSVLDGYNVCIFAYGQTGSGKTYTMSGPCISSTEDWGVNYRALNDLFEISESR------------------------- 617 (1073)
Q Consensus 563 LV~svLdGyN~~IfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~~------------------------- 617 (1073)
+|.+++.|-|..+|+||.|||||||||+|+ +.++||+||+++-||..++.+
T Consensus 106 lV~dlLkgqn~LlFTyGVTgSGKTYTm~G~----~~~~GIlPR~Ld~iF~siq~~~~~k~~~kp~~s~~~e~~~~~~alL 181 (809)
T KOG0247|consen 106 LVKDLLKGQNSLLFTYGVTGSGKTYTMTGT----PDRPGILPRALDVIFNSIQGRQAKKPVFKPLRSNLFEIKAEEDALL 181 (809)
T ss_pred HHHHHHcccceeEEEeeccCCCceEEeecC----CCCCCchHHHHHHHHHHhhceeccCceeccccchHHHHHHHHHHHH
Confidence 999999999999999999999999999994 578899999999999765531
Q ss_pred ---------------------------------------cCCceEEEEEEEEEEecceeeeccCCCCCCcc---cccccc
Q 001464 618 ---------------------------------------KNSILYEVGVQMVEIYNEQVRDLLSSDGPQRR---LGIWNA 655 (1073)
Q Consensus 618 ---------------------------------------~~~~~~~V~vS~lEIYnE~V~DLL~~~~~~~~---l~i~~~ 655 (1073)
..+..|.|+|||+|||||-|||||.+.+.+.. +.+...
T Consensus 182 ~lkr~~~~nd~~~ts~~~~~~~~e~~e~~~~~e~~~~~l~~d~~ysV~VSf~EIYN~~iYDLLe~~s~q~~~~~~~ll~~ 261 (809)
T KOG0247|consen 182 QLKREAMLNDRKSTSKAHRQSTPEYAEHIHVIEQPALELDEDIVYSVFVSFVEIYNNYIYDLLEDASFQGKLQKLKLLRE 261 (809)
T ss_pred hhhhhhccccccCcchhhccccHHHHhhcchhcccccccCcCcEEEEEeeHHHHHHHHHHHhhccccccchhhhhhhhhh
Confidence 02356999999999999999999987654332 234555
Q ss_pred cCCCceecCCcEEEEecCHHHHHHHHHhhhcccccccCCCcCCCCCCccEEEEEEEeEecC--CCcEEEeeeEEEecCCC
Q 001464 656 TLPNGLAVPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSILTIHVRGTDLK--NGAILRGSLHLIDLAGS 733 (1073)
Q Consensus 656 ~~~g~~vv~~~~~~vvss~eev~~lL~~G~~nR~~~sT~~N~~SSRSH~IftI~V~~~~~~--~~~~~~skL~LVDLAGS 733 (1073)
+..+..++.+++++.|++.+|+++++..|.++|.+++|.+|..|||||+||+|.|.+.... ++.+..|.|.|||||||
T Consensus 262 d~~~~~~Vkgl~~V~VssseEA~~l~~lGqk~r~~asT~lN~~SSRSHsVFtIkl~q~~~~~~s~~i~vSqlsLvDLAGS 341 (809)
T KOG0247|consen 262 DTNGNMYVKGLTEVEVSSSEEALELFQLGQKRRRVASTKLNANSSRSHSVFTIKLVQAPRSQDSNQITVSQLSLVDLAGS 341 (809)
T ss_pred ccCCCeeeccccEEEeccHHHHHHHHHHHHhhhhhhheeccccccccceeEEEEeeecccccccCceeEEeeeeeecccc
Confidence 6678889999999999999999999999999999999999999999999999999876655 56788999999999999
Q ss_pred ccccCCcchhhhHHHHHHHhhhHHHHHHHHHHHhcC-----CCCccCcCchhhhhhhhccCCCcceeeEEecCCCCCCHH
Q 001464 734 ERVDRSEATGDRLREAQHINKSLSALGDVIFALAHK-----NPHVPYRNSKLTQVLQSSLGGQAKTLMMVQLNPDVDSYS 808 (1073)
Q Consensus 734 ER~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~k-----~~hVPYRdSKLTrLLqdSLGGnsKTlmI~~ISP~~~~~~ 808 (1073)
||..++++.|.||+||.+||.||.+||.||.+|..+ +.+||||+||||+++|.+|.|..+.+||+||+|...+|+
T Consensus 342 ERt~rtq~sG~RLrEagNINtSLmTLg~Cie~LR~nqk~ks~~~VPyRdSKLThlfq~~f~G~gki~MIV~vnp~~e~Yd 421 (809)
T KOG0247|consen 342 ERTNRTQNSGERLREAGNINTSLMTLRRCIDVLRENQKSKSQKIVPYRDSKLTHLFKNYFDGKGKIRMIVCVNPKAEDYD 421 (809)
T ss_pred hhcccccchhHHHHhhccccHHHHHHHHHHHHHHHHhhhhccccCcchHHHHHHHHHHhcCCCCcEEEEEecCCchhhHH
Confidence 999999999999999999999999999999999853 368999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHhccccccc
Q 001464 809 ETISTLKFAERVSGVELGA 827 (1073)
Q Consensus 809 ETlsTLrFA~Rak~I~~~~ 827 (1073)
|+++.|+||+-+..|.+..
T Consensus 422 Enl~vlkFaeiaq~v~v~~ 440 (809)
T KOG0247|consen 422 ENLNVLKFAEIAQEVEVAR 440 (809)
T ss_pred HHHHHHHHHHhcccccccC
Confidence 9999999999999987543
No 27
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=4.8e-63 Score=589.42 Aligned_cols=342 Identities=34% Similarity=0.540 Sum_probs=288.7
Q ss_pred cCCCCCcccCC--CccEEEEccCCEEEEeCCCCCCCCCceeeeeceeeCCCCChHHHHhc-hHHHHHHhhcCcceeEEee
Q 001464 502 IRPFLPGQSKK--QTTIEYIGENGELVVSNPLKQGKDNHRLFKFNKVFGPEASQEEVFLD-TRPLIRSVLDGYNVCIFAY 578 (1073)
Q Consensus 502 VRP~l~~e~~~--~~~v~~~~~~~~l~v~~p~~~~~~~~k~F~FD~VF~~~atQeeVf~~-~~pLV~svLdGyN~~IfAY 578 (1073)
|||+...+... ..++.+.+.+.++++. +..+|+||+||+....|.++|+. ++|+++.+|+|||+|++||
T Consensus 1 vRpl~~~e~~~g~~~c~~~~~~~pqv~ig--------~~~s~t~d~v~~~~~~Q~~~~e~~V~~l~~~lf~gynatvlay 72 (913)
T KOG0244|consen 1 VRPLKQMEEEQGCRRCTEVSPRTPQVAIG--------KDASFTYDKVFLDLESQKEVYESCVRPLREKLFAGYNATVLAY 72 (913)
T ss_pred CCCccchHHHhcchhhcccCCCCCceeec--------CCcceeeeeeccCchHHHHHHHHHHHHHHHHHhhhhcceeeee
Confidence 68987766543 3345555555555543 34689999999999999999998 6999999999999999999
Q ss_pred cccCCCCCeeeecCCCCCCCccchhHHHHHHHHHHHHhccCCceEEEEEEEEEEecceeeeccCCCCCCcccccccccCC
Q 001464 579 GQTGSGKTYTMSGPCISSTEDWGVNYRALNDLFEISESRKNSILYEVGVQMVEIYNEQVRDLLSSDGPQRRLGIWNATLP 658 (1073)
Q Consensus 579 GQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~V~DLL~~~~~~~~l~i~~~~~~ 658 (1073)
|||||||||||.+.+.....+.|||||++.++|..+..... ..|.|.|+|+|||+|.|+|||.|......+.+. ...
T Consensus 73 gQtgsgkTytmgt~~~~~~~~~Gvipr~v~~~f~~i~~~~~-~~f~i~vs~vely~e~v~dl~~~~~~~~~i~~~--e~~ 149 (913)
T KOG0244|consen 73 GQTGSGKTYTMGTNDAPAQDTVGVIPRAVSTLFTRIGKTES-FVFRITVSFVELYNEEVLDLLKPSRLKANIKLR--EPK 149 (913)
T ss_pred cccCCCceeecccccccccccCCcCcchHHHHHHHHHhhhc-cceeeeeeeeeccchhhhhhcChhhhhhceecc--ccC
Confidence 99999999999886544444479999999999999887654 789999999999999999999965443333332 345
Q ss_pred CceecCCcEEEEecCHHHHHHHHHhhhcccccccCCCcCCCCCCccEEEEEEEeEec-CCCcEEEeeeEEEecCCCcccc
Q 001464 659 NGLAVPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSILTIHVRGTDL-KNGAILRGSLHLIDLAGSERVD 737 (1073)
Q Consensus 659 g~~vv~~~~~~vvss~eev~~lL~~G~~nR~~~sT~~N~~SSRSH~IftI~V~~~~~-~~~~~~~skL~LVDLAGSER~~ 737 (1073)
|.+.+.+++...+....+++..|..|...|++++|+||..|||||+|||+.+.+... .....++++|||||||||||.+
T Consensus 150 g~it~~glte~tv~~~~q~~~~L~~g~~~RtvasTnMN~qssRshAifti~lkq~kk~~~~s~~~sKlhlVDLAGSER~k 229 (913)
T KOG0244|consen 150 GEITIRGLTEKTVRMKLQLLSRLEKGSLERTVASTNMNAQSSRSHAIFTITLKQRKKLSKRSSFCSKLHLVDLAGSERVK 229 (913)
T ss_pred CceEEEeehHHHHHHHHHHHHHHHhchHHHHHHHHhcchhhhhhhHHHHHHHHHHHHhhccchhhhhhheeecccccccc
Confidence 778888889989999999999999999999999999999999999999999976432 3344678999999999999999
Q ss_pred CCcchhhhHHHHHHHhhhHHHHHHHHHHHhcCCC--CccCcCchhhhhhhhccCCCcceeeEEecCCCCCCHHHHHHHHH
Q 001464 738 RSEATGDRLREAQHINKSLSALGDVIFALAHKNP--HVPYRNSKLTQVLQSSLGGQAKTLMMVQLNPDVDSYSETISTLK 815 (1073)
Q Consensus 738 ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~k~~--hVPYRdSKLTrLLqdSLGGnsKTlmI~~ISP~~~~~~ETlsTLr 815 (1073)
++++.|+|++|+.+||.+|++||+||+||..... |||||+|||||||||+||||++|+||+||||+..+++||++||+
T Consensus 230 kT~a~gdrlKEgInIN~gLL~LgnVIsaLg~~kk~~~vpyRdSkltrlLQdslgGns~tlmiaCiSpadsn~~EtlnTl~ 309 (913)
T KOG0244|consen 230 KTKAEGDRLKEGININGGLLALGNVISALGEAKKGGEVPYRDSKLTRLLQDSLGGNSDTLMIACISPADSNAQETLNTLR 309 (913)
T ss_pred ccccchhhhhhccCcchHHHHHHHHHHHHHhhhcCCcccchHHHHHHHHHHHhcCCcceeeeeecChhhhhhhhHHHHHH
Confidence 9999999999999999999999999999997665 99999999999999999999999999999999999999999999
Q ss_pred HHhHhccccccccccCCC-cchHHHHHHHHHHHHHHHHHH
Q 001464 816 FAERVSGVELGAARSNKE-GSDVRELMEQVGSLKDIITKK 854 (1073)
Q Consensus 816 FA~Rak~I~~~~~k~~~~-~~~v~eL~~qv~~Lk~~i~~~ 854 (1073)
||.|++.|++.++.++.. ...+..|+.|+..|+..+..+
T Consensus 310 ya~Rak~iknk~vvN~d~~~~~~~~lK~ql~~l~~ell~~ 349 (913)
T KOG0244|consen 310 YADRAKQIKNKPVVNQDPKSFEMLKLKAQLEPLQVELLSK 349 (913)
T ss_pred HhhHHHHhcccccccccHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999998876622 223455555555555555443
No 28
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.2e-58 Score=552.78 Aligned_cols=310 Identities=40% Similarity=0.613 Sum_probs=275.3
Q ss_pred ceeeeeceeeCCCCChHHHHhc-hHHHHHHhhcCcceeEEeecccCCCCCeeeecCCCCCCCccchhHHHHHHHHHHHHh
Q 001464 538 HRLFKFNKVFGPEASQEEVFLD-TRPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPCISSTEDWGVNYRALNDLFEISES 616 (1073)
Q Consensus 538 ~k~F~FD~VF~~~atQeeVf~~-~~pLV~svLdGyN~~IfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~ 616 (1073)
..+|.||+||++.++|++||+. +.|+++++++|||+||||||||||||||||.|. ..++||||+++.+||+.+..
T Consensus 55 ~~~~~fdkvf~~~~~q~~v~e~~~~~l~~~~l~g~N~TvfayGqTgsgKtyt~~G~----~~~~Gii~~~l~~lf~~l~~ 130 (568)
T COG5059 55 EGTYAFDKVFGPSATQEDVYEETIKPLIDSLLLGYNCTVFAYGQTGSGKTYTMSGT----EEEPGIIPLSLKELFSKLED 130 (568)
T ss_pred ceEEEEeeccCCCCcHHHHHHHhhhhHHHHHHhcccceEEEEcccCCCceeEeecC----ccccchHHHHHHHHHHHHHh
Confidence 5679999999999999999988 699999999999999999999999999999994 47899999999999999988
Q ss_pred ccCCceEEEEEEEEEEecceeeeccCCCCCCcccccccccCCCceecCCcEEEEecCHHHHHHHHHhhhcccccccCCCc
Q 001464 617 RKNSILYEVGVQMVEIYNEQVRDLLSSDGPQRRLGIWNATLPNGLAVPEASMYSVQSTADVLELMNIGLMNRAVCSTALN 696 (1073)
Q Consensus 617 ~~~~~~~~V~vS~lEIYnE~V~DLL~~~~~~~~l~i~~~~~~g~~vv~~~~~~vvss~eev~~lL~~G~~nR~~~sT~~N 696 (1073)
......|.|.|||+|||||+++|||.+.... .....+..+++++.+++...+.+.++++.+|..|..+|.+++|.+|
T Consensus 131 ~~~~~~~~v~is~lEiYnEk~~DLl~~~~~~---~~~~~~~~~~v~v~~l~~~~~~s~ee~l~~l~~~~~nr~~~~te~n 207 (568)
T COG5059 131 LSMTKDFAVSISYLEIYNEKIYDLLSPNEES---LNIREDSLLGVKVAGLTEKHVSSKEEILDLLRKGEKNRTTASTEIN 207 (568)
T ss_pred cccCcceeeEeehhHHHhhHHHhhccCcccc---ccccccCCCceEeecceEEecCChHHHHHHHHHhhhhcccccchhc
Confidence 7777789999999999999999999976543 2233455677888889999999999999999999999999999999
Q ss_pred CCCCCCccEEEEEEEeEecCCCcEEEeeeEEEecCCCccccCCcchhhhHHHHHHHhhhHHHHHHHHHHHhc--CCCCcc
Q 001464 697 ERSSRSHSILTIHVRGTDLKNGAILRGSLHLIDLAGSERVDRSEATGDRLREAQHINKSLSALGDVIFALAH--KNPHVP 774 (1073)
Q Consensus 697 ~~SSRSH~IftI~V~~~~~~~~~~~~skL~LVDLAGSER~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~--k~~hVP 774 (1073)
..|||||+||++++.+.+...+....++|+||||||||++..++..+.|++|+..||+||.+||+||.+|.. +..|||
T Consensus 208 ~~ssRshsi~~i~~~~~~~~~~~~~~~~l~lvDLagSE~~~~~~~~~~r~~E~~~iN~sLl~Lg~vI~~L~~~~~~~~ip 287 (568)
T COG5059 208 DESSRSHSIFQIELASKNKVSGTSETSKLSLVDLAGSERAARTGNRGTRLKEGASINKSLLTLGNVINALGDKKKSGHIP 287 (568)
T ss_pred cccccceEEEEEEEEEeccCccceecceEEEEeeccccccchhhcccchhhhhhhhHhhHHHHHHHHHHHhccccCCccc
Confidence 999999999999999988877777778999999999999999999999999999999999999999999997 788999
Q ss_pred CcCchhhhhhhhccCCCcceeeEEecCCCCCCHHHHHHHHHHHhHhccccccccccC--CCcchHHHHHHHHHHHHHHHH
Q 001464 775 YRNSKLTQVLQSSLGGQAKTLMMVQLNPDVDSYSETISTLKFAERVSGVELGAARSN--KEGSDVRELMEQVGSLKDIIT 852 (1073)
Q Consensus 775 YRdSKLTrLLqdSLGGnsKTlmI~~ISP~~~~~~ETlsTLrFA~Rak~I~~~~~k~~--~~~~~v~eL~~qv~~Lk~~i~ 852 (1073)
||+||||||||++|||+++|+|||||+|...+++||.+||+||.|+++|.+.+..+. .....+.++..++...++.+.
T Consensus 288 yReskLTRlLq~sLgG~~~~~~i~~Isp~~~~~~et~~tL~~a~rak~I~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 367 (568)
T COG5059 288 YRESKLTRLLQDSLGGNCNTRVICTISPSSNSFEETINTLKFASRAKSIKNKIQVNSSSDSSREIEEIKFDLSEDRSEIE 367 (568)
T ss_pred hhhhHHHHHHHHhcCCCccEEEEEEEcCCCCchHHHHHHHHHHHHHhhcCCcccccCcCcchHHHHHHHhhhhhhhhhhh
Confidence 999999999999999999999999999999999999999999999999987765542 123334444444444444444
Q ss_pred HH
Q 001464 853 KK 854 (1073)
Q Consensus 853 ~~ 854 (1073)
.+
T Consensus 368 ~~ 369 (568)
T COG5059 368 IL 369 (568)
T ss_pred hH
Confidence 33
No 29
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=100.00 E-value=2.6e-49 Score=412.26 Aligned_cols=176 Identities=57% Similarity=0.881 Sum_probs=167.5
Q ss_pred HHhchHHHHHHhhcCcceeEEeecccCCCCCeeeecCCCCCCCccchhHHHHHHHHHHHHhccCCceEEEEEEEEEEecc
Q 001464 556 VFLDTRPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPCISSTEDWGVNYRALNDLFEISESRKNSILYEVGVQMVEIYNE 635 (1073)
Q Consensus 556 Vf~~~~pLV~svLdGyN~~IfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE 635 (1073)
||+.+.|+|+.+++|||+||||||||||||||||+|+ ..++||+||++++
T Consensus 8 vf~~~~~~v~~~~~G~n~~i~~yG~tGsGKT~Tm~G~----~~~~Giip~~~~~-------------------------- 57 (186)
T cd01363 8 VFRDVGPLLQSALDGYNVCIFAYGQTGSGKTYTMEGK----REGAGIIPRTVTD-------------------------- 57 (186)
T ss_pred HHHHHHHHHHHHhCCcceeEEEECCCCCcceEecCCC----CCCCCcchHHHHH--------------------------
Confidence 9998669999999999999999999999999999995 3788999999987
Q ss_pred eeeeccCCCCCCcccccccccCCCceecCCcEEEEecCHHHHHHHHHhhhcccccccCCCcCCCCCCccEEEEEEEeEec
Q 001464 636 QVRDLLSSDGPQRRLGIWNATLPNGLAVPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSILTIHVRGTDL 715 (1073)
Q Consensus 636 ~V~DLL~~~~~~~~l~i~~~~~~g~~vv~~~~~~vvss~eev~~lL~~G~~nR~~~sT~~N~~SSRSH~IftI~V~~~~~ 715 (1073)
++.++..|.++|.++.|.+|+.|||||+||+|+|.+.+.
T Consensus 58 -----------------------------------------~~~ll~~g~~~R~~~~t~~N~~SSRsH~i~~i~v~~~~~ 96 (186)
T cd01363 58 -----------------------------------------VIDLMDKGNANRTTAATAMNEHSSRSHSVFRIHFGGKNA 96 (186)
T ss_pred -----------------------------------------HHHHHhhccccccccccCCCCccCcccEEEEEEEEEeec
Confidence 788999999999999999999999999999999998776
Q ss_pred CC---CcEEEeeeEEEecCCCccccCCcchhhhHHHHHHHhhhHHHHHHHHHHHhcCCCCccCcCchhhhhhhhccCCCc
Q 001464 716 KN---GAILRGSLHLIDLAGSERVDRSEATGDRLREAQHINKSLSALGDVIFALAHKNPHVPYRNSKLTQVLQSSLGGQA 792 (1073)
Q Consensus 716 ~~---~~~~~skL~LVDLAGSER~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~k~~hVPYRdSKLTrLLqdSLGGns 792 (1073)
.. +....++|+||||||||+.++++..+++++|+..||+||++|++||.+|++++.|||||+||||+||||+|||||
T Consensus 97 ~~~~~~~~~~s~l~lVDLAGsE~~~~~~~~~~~~~e~~~in~sl~~L~~~i~~l~~~~~~vpyr~SkLT~lL~~~L~g~~ 176 (186)
T cd01363 97 LASATEQPKVGKINLVDLAGSERIDFSGAEGSRLTETANINKSLSTLGNVISALAERDSHVPYRESKLTRLLQDSLGGNS 176 (186)
T ss_pred CCCCccceeeeeEEEEEccccccccccCCchhhHHHHHHHhhHHHHHHHHHHHHhcCCCCCCCcccHHHHHHHHhcCCCC
Confidence 55 567789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeEEecCC
Q 001464 793 KTLMMVQLNP 802 (1073)
Q Consensus 793 KTlmI~~ISP 802 (1073)
+|+||+||||
T Consensus 177 ~t~~i~~vsP 186 (186)
T cd01363 177 RTLMVACISP 186 (186)
T ss_pred eEEEEEEeCc
Confidence 9999999998
No 30
>KOG2046 consensus Calponin [Cytoskeleton]
Probab=99.90 E-value=3.9e-24 Score=220.04 Aligned_cols=123 Identities=27% Similarity=0.413 Sum_probs=110.5
Q ss_pred CccCCCCCcHhhhhHhhhccChhhHHHHHHHHHHhcCCCCCCCCccHHHHHHHchhhHHHHHHHhhhcCCCccCC----C
Q 001464 8 VFDHSTGTPAENIEALDNMAEGNQLSTLVEWLNEMIPHIHLPFEASEEKLRACLVDGTVLCLVLNKLSPDSVEMG----A 83 (1073)
Q Consensus 8 ~~~~s~~~s~~~~~~~~~~~~~~r~~e~~~Wie~vlg~~~lp~~~s~edl~~~LrDGviLC~L~N~l~Pgsv~k~----~ 83 (1073)
+-+|+||++++...+.+++++++.+.+++.||+.++. ..++ ...+|.++|+||+|||+|+|+|.||++++. +
T Consensus 3 n~~~~~gl~~~v~~k~~~k~~~~~~~el~~WI~~~~~-~~~~---~~~~f~~~LKDG~iLCkl~N~l~p~~~~~~~~s~~ 78 (193)
T KOG2046|consen 3 NRGPSYGLSREVQQKIESKYDDELEKELREWIENVVL-TELP---ARGDFQDLLKDGVILCKLINKLYPGVVKKINESKM 78 (193)
T ss_pred CCCCccchHHHHHHHhhcccCHHHHHHHHHHHHHhhc-cCCC---cccCHHHHHcchHHHHHHHHHhCcCcccccccccc
Confidence 5689999999999999999999999999999999754 2232 234699999999999999999999888543 4
Q ss_pred CCCCCcccHHHHHHHHHhCCCCC---Cccccc-cCCCchhHHHHHHHHHhhhhccC
Q 001464 84 NFEPGPANVKRFLAAMDDMGLPR---FELSDL-EQGNMAPVLQCLRSLRASFSFCD 135 (1073)
Q Consensus 84 ~~~~~~eNI~~FL~ac~~~Gvp~---Fe~~DL-E~~n~~~Vv~cL~aL~~~~~~k~ 135 (1073)
+|.+ ||||++|+.||+.|||++ |+++|| |.+|+.+|+.||++|.+++..++
T Consensus 79 ~f~q-mEnIs~Fi~a~~~ygv~~~d~FqtvDLfE~kd~~~V~vtL~aLa~~a~~~~ 133 (193)
T KOG2046|consen 79 AFVQ-MENISNFIKAAKKYGVPEVDLFQTVDLFEGKDMAQVQVTLLALARKAQKKG 133 (193)
T ss_pred cHHH-HHHHHHHHHHHHhcCCChhhcccccccccCCCHHHHHHHHHHHHHHHhhcc
Confidence 6667 999999999999999999 999999 99999999999999999999886
No 31
>COG5199 SCP1 Calponin [Cytoskeleton]
Probab=99.73 E-value=4.2e-18 Score=167.24 Aligned_cols=108 Identities=24% Similarity=0.382 Sum_probs=96.7
Q ss_pred hhhccChhhHHHHHHHHHHhcCCCCCCCCccHHHHHHHchhhHHHHHHHhhhcCCCc---cCCCCCCCCcccHHHHHHHH
Q 001464 23 LDNMAEGNQLSTLVEWLNEMIPHIHLPFEASEEKLRACLVDGTVLCLVLNKLSPDSV---EMGANFEPGPANVKRFLAAM 99 (1073)
Q Consensus 23 ~~~~~~~~r~~e~~~Wie~vlg~~~lp~~~s~edl~~~LrDGviLC~L~N~l~Pgsv---~k~~~~~~~~eNI~~FL~ac 99 (1073)
.+...-++.++|+..||+.+++ ..+.+. .||.++|+|||+||+++|...|+.| .++++|.| ||||..|+...
T Consensus 6 ~~~~~~~~~~kev~~Wie~~l~-~k~~pp---gdll~~lkdGv~lCril~ea~~~~I~yKeSkmpFVQ-menIs~Fin~~ 80 (178)
T COG5199 6 NRCPGMDKQQKEVTLWIETVLG-EKFEPP---GDLLSLLKDGVRLCRILNEASPLDIKYKESKMPFVQ-MENISSFINGL 80 (178)
T ss_pred ccCCCCHHHHHHHHHHHHHHHH-hhhCCc---ccHHHHHhcchHHHHHHhhcCcccceecccCCceee-HHHHHHHHHHH
Confidence 4566778899999999999999 655332 2699999999999999999999999 35678888 99999999999
Q ss_pred HhCCCCC---Cccccc-cCCCchhHHHHHHHHHhhhhccC
Q 001464 100 DDMGLPR---FELSDL-EQGNMAPVLQCLRSLRASFSFCD 135 (1073)
Q Consensus 100 ~~~Gvp~---Fe~~DL-E~~n~~~Vv~cL~aL~~~~~~k~ 135 (1073)
+.++||. |+++|| |.+|..+|+.||++|.+|+..+-
T Consensus 81 ~k~~vpe~elFQT~DLFE~kd~~qV~~~l~slSRya~K~~ 120 (178)
T COG5199 81 KKLRVPEYELFQTNDLFEAKDLRQVVICLYSLSRYAQKER 120 (178)
T ss_pred HHhCCCHHHHHHhhhHHhhcCHHHHHHHHHHHHHHHHHhc
Confidence 9999999 999999 99999999999999999998764
No 32
>cd00014 CH Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like spectrin, alpha-actinin, dystrophin, utrophin, and fimbrin, proteins essential for regulation of cell shape (cortexillins), and signaling proteins (Vav).
Probab=99.55 E-value=7.9e-15 Score=138.51 Aligned_cols=98 Identities=32% Similarity=0.486 Sum_probs=85.1
Q ss_pred hHHHHHHHHHHhcCCCCCCCCccHHHHHHHchhhHHHHHHHhhhcCCCccCCC----CCCCCcccHHHHHHHHHhCCCCC
Q 001464 31 QLSTLVEWLNEMIPHIHLPFEASEEKLRACLVDGTVLCLVLNKLSPDSVEMGA----NFEPGPANVKRFLAAMDDMGLPR 106 (1073)
Q Consensus 31 r~~e~~~Wie~vlg~~~lp~~~s~edl~~~LrDGviLC~L~N~l~Pgsv~k~~----~~~~~~eNI~~FL~ac~~~Gvp~ 106 (1073)
+++++.+||+.+++ ...+ +...+|...|+||++||+|+|.+.|+.++... ..+..++||..||.+|+.+|+|.
T Consensus 2 ~~~~l~~Win~~l~-~~~~--~~v~~~~~~l~dG~~L~~Ll~~~~p~~~~~~~~~~~~~~~~~~Ni~~~l~~~~~~gi~~ 78 (107)
T cd00014 2 QKEELLRWINKVLG-EYGP--VTINNFSTDLKDGIALCKLLNSLSPDLIDKKKINPLSRFKRLENINLALNFAEKLGVPV 78 (107)
T ss_pred hHHHHHHHHHHHhc-cCCC--ccHHHHHHHHhchHHHHHHHHHHCccccccccccccchhhHHHHHHHHHHHHHHcCCce
Confidence 46799999999999 4333 35678999999999999999999999996432 23445789999999999999999
Q ss_pred --Cccccc-cCCCchhHHHHHHHHHhhh
Q 001464 107 --FELSDL-EQGNMAPVLQCLRSLRASF 131 (1073)
Q Consensus 107 --Fe~~DL-E~~n~~~Vv~cL~aL~~~~ 131 (1073)
|++.|| +.+|+.+|+.||++|..++
T Consensus 79 ~~~~~~Dl~~~~n~~~vl~~l~~l~~~~ 106 (107)
T cd00014 79 VNFDAEDLVEDGDEKLVLGLLWSLIRKF 106 (107)
T ss_pred eccCHHHHhhCCCceeeHHHHHHHHHhh
Confidence 999999 8999999999999999876
No 33
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=99.40 E-value=2.9e-13 Score=168.88 Aligned_cols=97 Identities=26% Similarity=0.469 Sum_probs=83.6
Q ss_pred hHHHHHHHHHHhcCCCCCCCCccHHHHHHHchhhHHHHHHHhhhcCCCccC-----CCCCCCCcccHHHHHHHHHhCCCC
Q 001464 31 QLSTLVEWLNEMIPHIHLPFEASEEKLRACLVDGTVLCLVLNKLSPDSVEM-----GANFEPGPANVKRFLAAMDDMGLP 105 (1073)
Q Consensus 31 r~~e~~~Wie~vlg~~~lp~~~s~edl~~~LrDGviLC~L~N~l~Pgsv~k-----~~~~~~~~eNI~~FL~ac~~~Gvp 105 (1073)
|-.||+.||++|+| ++||++ .||.++|||||+|++|.|.+.|..-.. ...|.+ .+||..||.|++.+|||
T Consensus 43 r~eE~k~W~e~cl~-edL~pt---tele~~LRNGV~LAkL~~~f~PD~~~~~~~~~~~~frH-tdNi~q~~~~me~iglP 117 (1401)
T KOG2128|consen 43 RVEEAKRWIEECLG-EDLPPT---TELEEGLRNGVYLAKLGQFFAPDLEQTIYKANDLHFRH-TDNINQWLRAMESIGLP 117 (1401)
T ss_pred hHHHHHHHHHHHhc-ccCCCc---hHHHHHhhhhhHHHHHHhhcCCcceeeeeecCCceeec-chhHHHHHHHHhhcCCC
Confidence 56699999999999 778765 469999999999999999999954421 123555 89999999999999999
Q ss_pred C---Cccccc-cCCCchhHHHHHHHHHhhhhc
Q 001464 106 R---FELSDL-EQGNMAPVLQCLRSLRASFSF 133 (1073)
Q Consensus 106 ~---Fe~~DL-E~~n~~~Vv~cL~aL~~~~~~ 133 (1073)
+ |++.|+ |++||+ |+.|||||..|.-.
T Consensus 118 ~iF~~E~~Dvy~~kN~p-~i~cihaLs~~l~k 148 (1401)
T KOG2128|consen 118 EIFYPETTDVYEGKNIP-VIYCIHALSLYLFK 148 (1401)
T ss_pred cccccchhhhhcCCCCc-eeeHHHHHHHHHhc
Confidence 9 999999 999999 99999999777654
No 34
>COG5261 IQG1 Protein involved in regulation of cellular morphogenesis/cytokinesis [Cell division and chromosome partitioning / Signal transduction mechanisms]
Probab=99.39 E-value=5.6e-13 Score=158.85 Aligned_cols=102 Identities=29% Similarity=0.565 Sum_probs=92.4
Q ss_pred hhHHHHHHHHHHhcCCCCCCCCccHHHHHHHchhhHHHHHHHhhhcCCCccC-----CCCCCCCcccHHHHHHHHHhCCC
Q 001464 30 NQLSTLVEWLNEMIPHIHLPFEASEEKLRACLVDGTVLCLVLNKLSPDSVEM-----GANFEPGPANVKRFLAAMDDMGL 104 (1073)
Q Consensus 30 ~r~~e~~~Wie~vlg~~~lp~~~s~edl~~~LrDGviLC~L~N~l~Pgsv~k-----~~~~~~~~eNI~~FL~ac~~~Gv 104 (1073)
=|-.||+.||+++++ ..+| +..|.+.||+||+|.+|..+++|..+.. ..+|.+ .+||+.||..+..+||
T Consensus 44 CRv~EaK~WIee~~~-~~l~----~~~fe~slRnGV~La~l~q~f~pd~~~~iF~~~~LQfrH-tdNIN~Fld~i~~vGl 117 (1054)
T COG5261 44 CRVSEAKIWIEEVIE-EALP----ELCFEDSLRNGVFLAKLTQRFNPDLTTVIFPADKLQFRH-TDNINAFLDLIEHVGL 117 (1054)
T ss_pred HhHHHHHHHHHHHhc-cCCc----hhhHHHHHhccchHHHHHHHhCCCceeEeeecccceeec-cccHHHHHhHhhhcCC
Confidence 588899999999999 7776 5579999999999999999999998843 345666 8999999999999999
Q ss_pred CC---Cccccc-cCCCchhHHHHHHHHHhhhhccCCC
Q 001464 105 PR---FELSDL-EQGNMAPVLQCLRSLRASFSFCDEE 137 (1073)
Q Consensus 105 p~---Fe~~DL-E~~n~~~Vv~cL~aL~~~~~~k~~~ 137 (1073)
|+ |+..|| |++|+++|+.|||||..+..|+|-.
T Consensus 118 Pe~FhFEl~DlYekKN~pkViyciHaL~~~ls~~g~t 154 (1054)
T COG5261 118 PESFHFELQDLYEKKNIPKVIYCIHALISMLSWPGKT 154 (1054)
T ss_pred cceeeeehHhhhccCCcchhHHHHHHHHHHhcCCCCC
Confidence 99 999999 9999999999999999999999744
No 35
>PF00307 CH: Calponin homology (CH) domain; InterPro: IPR001715 The calponin homology domain (also known as CH-domain) is a superfamily of actin-binding domains found in both cytoskeletal proteins and signal transduction proteins []. It comprises the following groups of actin-binding domains: Actinin-type (including spectrin, fimbrin, ABP-280) (see IPR001589 from INTERPRO). Calponin-type (see IPR000557 from INTERPRO). A comprehensive review of proteins containing this type of actin-binding domains is given in []. The CH domain is involved in actin binding in some members of the family. However in calponins there is evidence that the CH domain is not involved in its actin binding activity []. Most proteins have two copies of the CH domain, however some proteins such as calponin and the human vav proto-oncogene (P15498 from SWISSPROT) have only a single copy. The structure of an example CH-domain has recently been solved []. This entry represents the calponin-homology (CH) domain, a superfamily of actin-binding domains found in cytoskeletal proteins (contain two CH domain in tandem repeat), in regulatory proteins from muscle, and in signal transduction proteins. This domain has a core structure consisting of a 4-helical bundle. This domain is found in: Calponin, which is involved in the regulation of contractility and organisation of the actin cytoskeleton in smooth muscle cells []. Beta-spectrin, a major component of a submembrane cytoskeletal network connecting actin filaments to integral plasma membrane proteins []. The actin-cross-linking domain of the fimbrin/plastin family of actin filament bundling or cross-linking proteins []. Utrophin,a close homologue of dystrophin []. Dystrophin, the protein found to be defective in Duchenne muscular dystrophy; this protein contains a tandem repeat of two CH domains []. Actin-binding domain of plectin, a large and widely expressed cytolinker protein []. The N-terminal microtubule-binding domain of microtubule-associated protein eb1 (end-binding protein), a member of a conserved family of proteins that localise to the plus-ends of microtubules []. Ras GTPase-activating-like protein rng2, an IQGAP protein that is essential for the assembly of an actomyosin ring during cytokinesis []. Transgelin, which suppresses androgen receptor transactivation []. ; GO: 0005515 protein binding; PDB: 2DK9_A 1WYL_A 1WKU_B 1TJT_A 3FER_A 2WA7_A 2WA5_A 2WA6_A 2R0O_A 1PXY_A ....
Probab=99.29 E-value=2.2e-12 Score=121.90 Aligned_cols=99 Identities=28% Similarity=0.441 Sum_probs=79.4
Q ss_pred HHHHHHHHHHhcCCCCCCCCccHHHHHHHchhhHHHHHHHhhhcCCCcc-CCCCC-----CCCcccHHHHHHHHHh-CCC
Q 001464 32 LSTLVEWLNEMIPHIHLPFEASEEKLRACLVDGTVLCLVLNKLSPDSVE-MGANF-----EPGPANVKRFLAAMDD-MGL 104 (1073)
Q Consensus 32 ~~e~~~Wie~vlg~~~lp~~~s~edl~~~LrDGviLC~L~N~l~Pgsv~-k~~~~-----~~~~eNI~~FL~ac~~-~Gv 104 (1073)
+.++..||+.+++... ......+|...|+||++||+|+|.+.|+.++ +..+. ++.++||..|+.+|+. +|+
T Consensus 1 e~~ll~Win~~l~~~~--~~~~v~~~~~~l~dG~~L~~Li~~l~p~~i~~~~~~~~~~~~~~~~~Ni~~~l~~~~~~lg~ 78 (108)
T PF00307_consen 1 EKELLKWINSHLEKYG--KGRRVTNFSEDLRDGVVLCKLINKLFPGTIDLKKINPNLKSPFDKLENIELALEAAEKKLGI 78 (108)
T ss_dssp HHHHHHHHHHHHTTST--TTSTCSSTSGGGTTSHHHHHHHHHHSTTSSSGGGSSTSSSSHHHHHHHHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHccccc--CCCCcCcHHHHhcCHHHHHHHHHHHhhccchhhhccccchhhhHHHHHHHHHHHHHHHHcCC
Confidence 4689999999998431 1112236999999999999999999999883 22211 2347899999999988 999
Q ss_pred CC-Cccccc-cCCCchhHHHHHHHHHhhhh
Q 001464 105 PR-FELSDL-EQGNMAPVLQCLRSLRASFS 132 (1073)
Q Consensus 105 p~-Fe~~DL-E~~n~~~Vv~cL~aL~~~~~ 132 (1073)
|. +.+.|| +.+|...|+.||.+|..+|+
T Consensus 79 ~~~~~~~dl~~~~~~~~vl~~l~~l~~~~e 108 (108)
T PF00307_consen 79 PPLLSPEDLVEKGDEKSVLSFLWQLFRYFE 108 (108)
T ss_dssp SCTS-HHHHHSTT-HHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 99 999999 79999999999999999985
No 36
>smart00033 CH Calponin homology domain. Actin binding domains present in duplicate at the N-termini of spectrin-like proteins (including dystrophin, alpha-actinin). These domains cross-link actin filaments into bundles and networks. A calponin homology domain is predicted in yeasst Cdc24p.
Probab=99.28 E-value=3.7e-12 Score=119.13 Aligned_cols=93 Identities=29% Similarity=0.355 Sum_probs=76.1
Q ss_pred HHHHHHHHHHhcCCCCCCCCccHHHHHHHchhhHHHHHHHhhhcCCCccCCCC-----CCCCcccHHHHHHHHHhCCCCC
Q 001464 32 LSTLVEWLNEMIPHIHLPFEASEEKLRACLVDGTVLCLVLNKLSPDSVEMGAN-----FEPGPANVKRFLAAMDDMGLPR 106 (1073)
Q Consensus 32 ~~e~~~Wie~vlg~~~lp~~~s~edl~~~LrDGviLC~L~N~l~Pgsv~k~~~-----~~~~~eNI~~FL~ac~~~Gvp~ 106 (1073)
+.++..|++.+++ ... ....++|..+|+||++||+|+|.+.|+.+++... .++.++||+.||.+|+++|...
T Consensus 2 ~~~l~~Win~~l~-~~~--~~~v~~~~~~l~dG~~L~~L~~~l~p~~i~~~~~~~~~~~~~~~~Ni~~~l~~~~~~g~~~ 78 (103)
T smart00033 2 EKTLLRWVNSLLA-EYG--KPPVTNFSSDLSDGVALCKLLNSLSPGSVDKKKVNASLSRFKKIENINLALSFAEKLGGKL 78 (103)
T ss_pred hHHHHHHHHHHcc-cCC--CCcHHHHHHHHccHHHHHHHHHHHCCCcCChhhccccccHHHHHHhHHHHHHHHHHcCCee
Confidence 5789999999999 332 2345789999999999999999999999964321 1334689999999999999533
Q ss_pred --Cccccc-cC-CCchhHHHHHHHH
Q 001464 107 --FELSDL-EQ-GNMAPVLQCLRSL 127 (1073)
Q Consensus 107 --Fe~~DL-E~-~n~~~Vv~cL~aL 127 (1073)
|++.|| ++ +++..|+.||+.|
T Consensus 79 ~~~~~~Dl~~~~k~~~~v~~~l~~~ 103 (103)
T smart00033 79 VLFEPEDLVEGNKLILGVIWTLILL 103 (103)
T ss_pred eccCHHHHhhcchHHHHHHHHHHhC
Confidence 999999 77 5899999999864
No 37
>KOG2996 consensus Rho guanine nucleotide exchange factor VAV3 [Signal transduction mechanisms]
Probab=99.05 E-value=2.5e-10 Score=131.96 Aligned_cols=101 Identities=30% Similarity=0.517 Sum_probs=80.3
Q ss_pred hHHHHHHHHHH--hcCCCC-CC-CCccHHHHHHHchhhHHHHHHHhhhcCCCcc-CCCCCCCCcc------cHHHHHHHH
Q 001464 31 QLSTLVEWLNE--MIPHIH-LP-FEASEEKLRACLVDGTVLCLVLNKLSPDSVE-MGANFEPGPA------NVKRFLAAM 99 (1073)
Q Consensus 31 r~~e~~~Wie~--vlg~~~-lp-~~~s~edl~~~LrDGviLC~L~N~l~Pgsv~-k~~~~~~~~e------NI~~FL~ac 99 (1073)
....+..||.. |++... .. ..+..-||+.+|||||+||.|+|.|.|++|. |.+++.++|. ||+.||.+|
T Consensus 3 lWrqCarWLidckVLptnhrvtw~~a~v~dlAq~LRDGvLLCqLlnnL~p~sIdlkeIn~rpQmSqFLClkNIrtFl~~C 82 (865)
T KOG2996|consen 3 LWRQCARWLIDCKVLPTNHRVTWDSAQVFDLAQALRDGVLLCQLLNNLVPHSIDLKEINLRPQMSQFLCLKNIRTFLMFC 82 (865)
T ss_pred HHHHHHHHHhhccccCCCcccccCcchHHHHHHHHhhhhHHHHHHhhcCCCcccHHHhhcCCCccchhhHhhHHHHHHHH
Confidence 45678999986 444111 11 1345568999999999999999999999994 5555544443 999999999
Q ss_pred -HhCCCCC---Cccccc-cCCCchhHHHHHHHHHhhh
Q 001464 100 -DDMGLPR---FELSDL-EQGNMAPVLQCLRSLRASF 131 (1073)
Q Consensus 100 -~~~Gvp~---Fe~~DL-E~~n~~~Vv~cL~aL~~~~ 131 (1073)
+.+||.+ |++.|| +-.++.+|+.+|..|....
T Consensus 83 ~~~Fglr~seLF~afDLfdv~dFgKVi~tlS~LS~t~ 119 (865)
T KOG2996|consen 83 CEKFGLRDSELFEAFDLFDVRDFGKVIKTLSRLSHTP 119 (865)
T ss_pred HHHhCCchhhhcchhhhhhhhhHHHHHHHHHHhccCh
Confidence 8899999 999999 9999999999999885443
No 38
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=99.03 E-value=1.6e-12 Score=157.16 Aligned_cols=271 Identities=28% Similarity=0.301 Sum_probs=178.2
Q ss_pred HHHhhhhhhhhhhccCCEEEEeecCCCCCcccCCCccEEEEccCC----EEEEeCCCCCCCCCceeeeeceeeCCCCChH
Q 001464 479 LAENRRLYNEVQDLKGNIRVYCRIRPFLPGQSKKQTTIEYIGENG----ELVVSNPLKQGKDNHRLFKFNKVFGPEASQE 554 (1073)
Q Consensus 479 l~erRkL~N~vqeLKGnIRV~~RVRP~l~~e~~~~~~v~~~~~~~----~l~v~~p~~~~~~~~k~F~FD~VF~~~atQe 554 (1073)
...+|.|++.++..+ +++|+|+|+|......+...+..+..... .+.+..+ .+.......|.||.+|.+...+.
T Consensus 291 skLTRlLq~sLgG~~-~~~~i~~Isp~~~~~~et~~tL~~a~rak~I~~~~~~~~~-~~~~~~~~~~~~d~~~~~~~~~~ 368 (568)
T COG5059 291 SKLTRLLQDSLGGNC-NTRVICTISPSSNSFEETINTLKFASRAKSIKNKIQVNSS-SDSSREIEEIKFDLSEDRSEIEI 368 (568)
T ss_pred hHHHHHHHHhcCCCc-cEEEEEEEcCCCCchHHHHHHHHHHHHHhhcCCcccccCc-CcchHHHHHHHhhhhhhhhhhhh
Confidence 346899999999998 99999999998765333222222221111 1111111 11112335699999999999999
Q ss_pred HHHhchHHHHHHhhcCcceeEEeecccCCCCCeeeecCCCCCCCccchhHHHHHHHHHHHHhc-cCCceEEEEEEEEEEe
Q 001464 555 EVFLDTRPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPCISSTEDWGVNYRALNDLFEISESR-KNSILYEVGVQMVEIY 633 (1073)
Q Consensus 555 eVf~~~~pLV~svLdGyN~~IfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~~-~~~~~~~V~vS~lEIY 633 (1073)
.++..+..+++..++| +++||++++|+++||.- ...++..-.+...|...... ...|.|...+.++++|
T Consensus 369 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 438 (568)
T COG5059 369 LVFREQSQLSQSSLSG----IFAYMQSLKKETETLKS------RIDLIMKSIISGTFERKKLLKEEGWKYKSTLQFLRIE 438 (568)
T ss_pred HHHHHHHhhhhhhhhh----HHHHHhhhhhhhhcccc------hhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 9999999999999999 99999999999999964 34466666667777655432 3456677777777777
Q ss_pred cceeeeccCCCCCCcccccccccCCCceecCCcEEEEecCHHHHHHHHHhhhcccccccCCCcCCCCCCccEEEEEEEeE
Q 001464 634 NEQVRDLLSSDGPQRRLGIWNATLPNGLAVPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSILTIHVRGT 713 (1073)
Q Consensus 634 nE~V~DLL~~~~~~~~l~i~~~~~~g~~vv~~~~~~vvss~eev~~lL~~G~~nR~~~sT~~N~~SSRSH~IftI~V~~~ 713 (1073)
-....++.....+.....+.....-........+...- ...+..... .+...+..+++..|.+++++|++|..+..+.
T Consensus 439 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~ 516 (568)
T COG5059 439 IDRLLLLREEELSKKKTKIHKLNKLRHDLSSLLSSIPE-ETSDRVESE-KASKLRSSASTKLNLRSSRSHSKFRDHLNGS 516 (568)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhhhhcch-hhhhhhhhh-hhccchhhcccchhhhhcccchhhhhcccch
Confidence 33333333221111110000000000000001111110 112222222 5678888999999999999999999888665
Q ss_pred ecCCCcEEEeeeEEEecCCCccccCCcchhhhHHHHHHHhhhHHHHHHHHHHHh
Q 001464 714 DLKNGAILRGSLHLIDLAGSERVDRSEATGDRLREAQHINKSLSALGDVIFALA 767 (1073)
Q Consensus 714 ~~~~~~~~~skL~LVDLAGSER~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa 767 (1073)
....+... ++.|||||+||. -+...|.++++...+|++|..+|++|.++.
T Consensus 517 ~~~~~~~~---~n~~~~~~~e~~-~s~~~~~~l~~~~~~~k~l~~~~d~~~~~~ 566 (568)
T COG5059 517 NSSTKELS---LNQVDLAGSERK-VSQSVGELLRETQSLNKSLSSLGDVIHALG 566 (568)
T ss_pred hhhhHHHH---hhhhhccccccc-hhhhhHHHHHhhHhhhhccccchhhhhhcc
Confidence 44333332 899999999999 999999999999999999999999998864
No 39
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.95 E-value=5.8e-10 Score=130.43 Aligned_cols=100 Identities=27% Similarity=0.363 Sum_probs=75.6
Q ss_pred hhHHHHHHHHHHhcCCCCCCCCccHHHHHHHchhhHHHHHHHhhhcCCCccCCCC-----CCCCc----ccHHHHHHHHH
Q 001464 30 NQLSTLVEWLNEMIPHIHLPFEASEEKLRACLVDGTVLCLVLNKLSPDSVEMGAN-----FEPGP----ANVKRFLAAMD 100 (1073)
Q Consensus 30 ~r~~e~~~Wie~vlg~~~lp~~~s~edl~~~LrDGviLC~L~N~l~Pgsv~k~~~-----~~~~~----eNI~~FL~ac~ 100 (1073)
+.+.|++.-+++++. ..+-. .-.+||.++|.||||||+|+|.|+|.+|+.+.. .+-.| -||.+||.||+
T Consensus 572 ~eE~eL~~QLRk~iE-tRLk~-sLp~Dl~aALtDGViLChLaN~lRPRSV~SIHVPSPaV~klsmarcrrNVdnFLeaCR 649 (722)
T KOG0532|consen 572 REEKELMLQLRKLIE-TRLKV-SLPEDLAAALTDGVILCHLANHLRPRSVASIHVPSPAVPKLSMARCRRNVDNFLEACR 649 (722)
T ss_pred hHHHHHHHHHHHHHH-HHhcc-cCchhHHHHhhcchhhHhhhcccCCCCccceecCCCccchhHHHHHHHhHHHHHHHHH
Confidence 455677777777776 22211 123579999999999999999999999854421 11112 29999999999
Q ss_pred hCCCCC---Cccccc-cC--CCchhHHHHHHHHHhhh
Q 001464 101 DMGLPR---FELSDL-EQ--GNMAPVLQCLRSLRASF 131 (1073)
Q Consensus 101 ~~Gvp~---Fe~~DL-E~--~n~~~Vv~cL~aL~~~~ 131 (1073)
+||||+ +...|+ .+ ++..+|+.+++++...+
T Consensus 650 kiGVpEa~lCS~~Dilq~~~r~~rk~~~t~~~~~~~a 686 (722)
T KOG0532|consen 650 KIGVPEADLCSPMDILQKIERNPRKVARTVLTVGKKA 686 (722)
T ss_pred HcCCChHhhcCHHHhhhhhcccchhHHHHHHhhcccc
Confidence 999999 889999 54 79999999999875544
No 40
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=97.78 E-value=1.6e-05 Score=92.86 Aligned_cols=109 Identities=19% Similarity=0.270 Sum_probs=89.3
Q ss_pred CccCCCCCcHhhhhHhhhccChhhHHHHHHHHHHhcCCC-----CCCCCccHHHHHHHchhhHHHHHHHhhhcCCCcc--
Q 001464 8 VFDHSTGTPAENIEALDNMAEGNQLSTLVEWLNEMIPHI-----HLPFEASEEKLRACLVDGTVLCLVLNKLSPDSVE-- 80 (1073)
Q Consensus 8 ~~~~s~~~s~~~~~~~~~~~~~~r~~e~~~Wie~vlg~~-----~lp~~~s~edl~~~LrDGviLC~L~N~l~Pgsv~-- 80 (1073)
+...+-|.+.-+.++....+.+..+.+-+.||+..++.. -+|.+|...+|.+..+||++||+|+|--.||.|.
T Consensus 97 g~~~~~~~~~~sst~~~Hti~eeEk~~fv~hIN~~L~~Dpdl~~~lPinp~t~~lf~~vkDGvlLcKlIN~svPdTIDER 176 (627)
T KOG0046|consen 97 GIKAASGTLKGSSTGTQHTINEEEKRAFVNHINSYLEGDPDLKHLLPINPNTNDLFDLVKDGVLLCKLINLSVPDTIDER 176 (627)
T ss_pred CcccccceeecccccceeeecHHHHHHHHHHHHHHhcCCcchhhcCCCCCchHHHHHHhccceeeehhhcccCCCchhhh
Confidence 333445556666677788889999999999999999844 3578888999999999999999999999999993
Q ss_pred -----CCCCCCCCcccHHHHHHHHHhCCCCC--Cccccc-cCCC
Q 001464 81 -----MGANFEPGPANVKRFLAAMDDMGLPR--FELSDL-EQGN 116 (1073)
Q Consensus 81 -----k~~~~~~~~eNI~~FL~ac~~~Gvp~--Fe~~DL-E~~n 116 (1073)
|..+.+...||.+.-|..++.+|+.- +-+.|| |++.
T Consensus 177 aiN~kk~Lnp~~~~EN~~l~lnSAkAiGc~VvNIga~Dl~eGrp 220 (627)
T KOG0046|consen 177 AINTKKKLNPFERNENLNLALNSAKAIGCTVVNIGAQDLAEGRP 220 (627)
T ss_pred hhccCCcCChhhhccchhhHHhhcccccceEEecCchhhhcCCc
Confidence 33344555899999999999999887 999999 7763
No 41
>PF11971 CAMSAP_CH: CAMSAP CH domain; InterPro: IPR022613 This domain is the N-terminal CH domain from calmodulin-regulated spectrin-associated proteins - CAMSAP proteins.
Probab=97.29 E-value=0.00029 Score=65.64 Aligned_cols=65 Identities=22% Similarity=0.381 Sum_probs=50.3
Q ss_pred CCCCccHHHHHHHchhhHHHHHHHhhhcCCCccC-CCCCCC------CcccHHHHHHHHH-hCCCCC--Cccccc
Q 001464 48 LPFEASEEKLRACLVDGTVLCLVLNKLSPDSVEM-GANFEP------GPANVKRFLAAMD-DMGLPR--FELSDL 112 (1073)
Q Consensus 48 lp~~~s~edl~~~LrDGviLC~L~N~l~Pgsv~k-~~~~~~------~~eNI~~FL~ac~-~~Gvp~--Fe~~DL 112 (1073)
.|..+..+||...|+||.+||.|++...|+.++. .+.+.. .+.|+..|..+|. .+|... |++.||
T Consensus 7 ~~~~~~v~dl~~~l~DG~~Lc~Lih~Y~P~~l~~~~I~~~~~mS~~~~l~N~~ll~~~c~~~l~~~~~~l~~edl 81 (85)
T PF11971_consen 7 APYFPPVEDLTQDLSDGRALCALIHFYCPQLLPLEDICLKTTMSQADSLYNLQLLNSFCQSHLGFSCCHLEPEDL 81 (85)
T ss_pred CCCCcchhhhhhhhccHHHHHHHHHHhCcceecHhHcccccchHHHHhhhhHHHHHHHHHHHcCCCcCcCCHHHH
Confidence 3455677899999999999999999999999962 233222 2349999999995 578777 666665
No 42
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.04 E-value=0.57 Score=57.31 Aligned_cols=164 Identities=15% Similarity=0.146 Sum_probs=78.1
Q ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
Q 001464 307 EENQVVANQLERIKTEKTNIAQKEKLEEQNALRLKKENDDRDIEISTLKQDLELAKRTHELHCLQLEEQ----------- 375 (1073)
Q Consensus 307 ee~~~~~~~l~~l~~e~~k~eek~~~~e~~~~~l~ke~e~~~~e~~~Lk~ele~~k~~~e~~~~~le~~----------- 375 (1073)
..++.+.++++.+..+...++.+....++++..+..+.+.+...+..++.++..++..++......+.-
T Consensus 213 ~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~~~L~~l~~~~~~~~~~l~~~~~~~~~~~~~~~Cp~C~~ 292 (562)
T PHA02562 213 ENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMYEKGGVCPTCTQ 292 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCC
Confidence 345566666666666666666666666667777776666655555555555555444333222111100
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHhHHHhhHHHHHHHHHHHHHhHHHHHHHH
Q 001464 376 ----IYETKIESQKKLQELERLLTVSKKKVEELESLSESKSQRWKRIEHSYQSFMGCQLGVIQDLRVAFESTKHEVLETK 451 (1073)
Q Consensus 376 ----~~~~k~ele~~l~e~e~~l~~~~~~v~~le~~~~~~~~~~~~~~~~~~~~l~~Q~~~l~el~~~~~~~k~ei~~~~ 451 (1073)
....-..++..+.+++..+..+...+.+++..... ......+-..++..+......+.++......++.++....
T Consensus 293 ~~~~~~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~-~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~ 371 (562)
T PHA02562 293 QISEGPDRITKIKDKLKELQHSLEKLDTAIDELEEIMDE-FNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQ 371 (562)
T ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01222344445555555555555544444333321 2222223333334444444445555555555555555554
Q ss_pred HhhH---HHHHhhhhhHHHHHHH
Q 001464 452 KNYS---KEFDCLGLNLKRLIDA 471 (1073)
Q Consensus 452 ~~~~---~e~~~l~~~~~~l~~~ 471 (1073)
.... +++..+..++..+...
T Consensus 372 ~~~~~~~~~l~~l~~~l~~~~~~ 394 (562)
T PHA02562 372 AEFVDNAEELAKLQDELDKIVKT 394 (562)
T ss_pred hhhhchHHHHHHHHHHHHHHHHH
Confidence 4332 3333343444444333
No 43
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=96.89 E-value=0.74 Score=52.23 Aligned_cols=48 Identities=38% Similarity=0.480 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHhhhccc-------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001464 329 KEKLEEQNALRLKKEND-------DRDIEISTLKQDLELAKRTHELHCLQLEEQI 376 (1073)
Q Consensus 329 k~~~~e~~~~~l~ke~e-------~~~~e~~~Lk~ele~~k~~~e~~~~~le~~~ 376 (1073)
..+..+.++..|.+..+ +.+.++.+|+++|.-++..|++....+..+.
T Consensus 97 ~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~heeEi~~L~~~~ 151 (312)
T PF00038_consen 97 ERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHEEEIEELREQI 151 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT-
T ss_pred HHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcc
Confidence 34455666666666664 3456788999999999999998877777655
No 44
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=96.77 E-value=0.68 Score=61.17 Aligned_cols=12 Identities=25% Similarity=0.288 Sum_probs=6.8
Q ss_pred EecCHHHHHHHH
Q 001464 670 SVQSTADVLELM 681 (1073)
Q Consensus 670 vvss~eev~~lL 681 (1073)
+|.+.+.+..+.
T Consensus 625 v~~~l~~a~~~~ 636 (1164)
T TIGR02169 625 VVEDIEAARRLM 636 (1164)
T ss_pred EEcCHHHHHHHh
Confidence 555656665553
No 45
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=96.72 E-value=0.13 Score=59.46 Aligned_cols=36 Identities=17% Similarity=0.193 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHH-HHHHHhhhcccch
Q 001464 312 VANQLERIKTEKTNIAQKEKLEE-QNALRLKKENDDR 347 (1073)
Q Consensus 312 ~~~~l~~l~~e~~k~eek~~~~e-~~~~~l~ke~e~~ 347 (1073)
|...++||+.|+-++|.....+. --+.+||+.....
T Consensus 134 Lsrkl~qLr~ek~~lEq~leqeqef~vnKlm~ki~Kl 170 (552)
T KOG2129|consen 134 LSRKLKQLRHEKLPLEQLLEQEQEFFVNKLMNKIRKL 170 (552)
T ss_pred hhHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44456777777777665433221 2245666655443
No 46
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.71 E-value=0.46 Score=59.97 Aligned_cols=32 Identities=19% Similarity=0.308 Sum_probs=23.3
Q ss_pred HhhhhhHHHhhhhhHHHhhHHHHHHHHHHHhh
Q 001464 269 RTATQYQNFKNQNNLFRAREEKYKSRIRVLET 300 (1073)
Q Consensus 269 ris~q~~~~~~q~~~~~~~~~~~~~~~~~le~ 300 (1073)
|+..-..-|+....-.|..|..+++.|..|..
T Consensus 422 rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~ 453 (697)
T PF09726_consen 422 RLEADVKKLRAELQSSRQSEQELRSQISSLTN 453 (697)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHhhccc
Confidence 44555555777777888889999888776665
No 47
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=96.68 E-value=0.69 Score=63.56 Aligned_cols=9 Identities=22% Similarity=0.438 Sum_probs=3.8
Q ss_pred HHHHHHHHH
Q 001464 32 LSTLVEWLN 40 (1073)
Q Consensus 32 ~~e~~~Wie 40 (1073)
++.+-.|++
T Consensus 578 ~Y~~~~WL~ 586 (1930)
T KOG0161|consen 578 DYNVDGWLE 586 (1930)
T ss_pred ccCccchhh
Confidence 334444444
No 48
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=96.65 E-value=1.6 Score=53.40 Aligned_cols=34 Identities=15% Similarity=0.211 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhh
Q 001464 309 NQVVANQLERIKTEKTNIAQKEKLEEQNALRLKK 342 (1073)
Q Consensus 309 ~~~~~~~l~~l~~e~~k~eek~~~~e~~~~~l~k 342 (1073)
.+.+..+.+.|+.+..+..++...+++++..+..
T Consensus 201 ~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~l~q 234 (546)
T PF07888_consen 201 SEELKEERESLKEQLAEARQRIRELEEDIKTLTQ 234 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555555555555555555544433
No 49
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=96.62 E-value=0.56 Score=57.10 Aligned_cols=132 Identities=20% Similarity=0.225 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHhh---hhhHHHhhhhhHHHhhHHHHHHHHHHHhhhhccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 001464 259 LRKVVPLIERRTA---TQYQNFKNQNNLFRAREEKYKSRIRVLETLTVGTTEENQVVANQLERIKTEKTNIAQKEKLEEQ 335 (1073)
Q Consensus 259 l~kvv~e~e~ris---~q~~~~~~q~~~~~~~~~~~~~~~~~le~l~~~~~ee~~~~~~~l~~l~~e~~k~eek~~~~e~ 335 (1073)
++++|.|..++.+ ....-|+.+++-++.+.++-. -.+.++++.+....+.+.++.+|..-+.-+.+..|+
T Consensus 97 ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~-------k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~ 169 (546)
T KOG0977|consen 97 ARKLLDETARERAKLEIEITKLREELKELRKKLEKAE-------KERRGAREKLDDYLSRLSELEAEINTLKRRIKALED 169 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-------HHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHH
Confidence 4556666654433 223334445555555555532 245677777777777777777777766666666666
Q ss_pred HHHHhhhcccchh---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHH
Q 001464 336 NALRLKKENDDRD---------------------IEISTLKQDLELAKRTHELHCLQLEEQIY---------ETKIESQK 385 (1073)
Q Consensus 336 ~~~~l~ke~e~~~---------------------~e~~~Lk~ele~~k~~~e~~~~~le~~~~---------~~k~ele~ 385 (1073)
++.+|.++..... ..+.+|.++|+-++..|+....+...... ..+.+|..
T Consensus 170 e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t~~~r~~F~~eL~~ 249 (546)
T KOG0977|consen 170 ELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDTTADNREYFKNELAL 249 (546)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhcccccchHHHHHHHHH
Confidence 6666666664333 34456667777777767665555444322 34556666
Q ss_pred HHHHHHHHHHHH
Q 001464 386 KLQELERLLTVS 397 (1073)
Q Consensus 386 ~l~e~e~~l~~~ 397 (1073)
-++|++...+..
T Consensus 250 Ai~eiRaqye~~ 261 (546)
T KOG0977|consen 250 AIREIRAQYEAI 261 (546)
T ss_pred HHHHHHHHHHHH
Confidence 666666555443
No 50
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=96.59 E-value=1.1 Score=59.19 Aligned_cols=13 Identities=31% Similarity=0.751 Sum_probs=9.5
Q ss_pred HHHHHhHhccccc
Q 001464 813 TLKFAERVSGVEL 825 (1073)
Q Consensus 813 TLrFA~Rak~I~~ 825 (1073)
++.+|+++-.|..
T Consensus 1139 ~~~~~d~~~~~~~ 1151 (1164)
T TIGR02169 1139 MIEYADRAIGVTM 1151 (1164)
T ss_pred HHHhcceeEeEEE
Confidence 5578888877754
No 51
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=96.50 E-value=1.7 Score=53.02 Aligned_cols=22 Identities=23% Similarity=0.219 Sum_probs=12.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHH
Q 001464 346 DRDIEISTLKQDLELAKRTHEL 367 (1073)
Q Consensus 346 ~~~~e~~~Lk~ele~~k~~~e~ 367 (1073)
....++..|+++|..++...+.
T Consensus 280 ~~~~e~e~LkeqLr~~qe~lqa 301 (546)
T PF07888_consen 280 QLQQENEALKEQLRSAQEQLQA 301 (546)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566666666665555443
No 52
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=96.45 E-value=1.5 Score=58.71 Aligned_cols=63 Identities=17% Similarity=0.303 Sum_probs=37.5
Q ss_pred hhHHHHHHHHHHHhcC-CCCc----------cCcCchhhhhhhhccCCCcceeeEEecCCCCCCHHHHHHHHHHHhHhcc
Q 001464 754 KSLSALGDVIFALAHK-NPHV----------PYRNSKLTQVLQSSLGGQAKTLMMVQLNPDVDSYSETISTLKFAERVSG 822 (1073)
Q Consensus 754 kSLsaLg~VI~aLa~k-~~hV----------PYRdSKLTrLLqdSLGGnsKTlmI~~ISP~~~~~~ETlsTLrFA~Rak~ 822 (1073)
|||+||.-++.-+.-+ .++. ++--+.+..+|+... +++..++|-+=. -|+.+|.+.-+
T Consensus 1072 KsLtAlAllFAi~~~~PaPf~vLDEVDAaLD~~Nv~r~~~~i~e~s-~~sQFIvIThr~----------~~m~~ad~l~G 1140 (1163)
T COG1196 1072 KSLTALALLFAIQKYRPAPFYVLDEVDAALDDANVERVARLIKEMS-KETQFIVITHRK----------GTMEAADRLVG 1140 (1163)
T ss_pred HHHHHHHHHHHHHhhCCCCeeeeccchhhccHHHHHHHHHHHHHhC-cCCeEEEEEcCh----------HHHHHHHHHee
Confidence 4788887766555432 2210 122346677777776 666655554332 47888888888
Q ss_pred ccccc
Q 001464 823 VELGA 827 (1073)
Q Consensus 823 I~~~~ 827 (1073)
|....
T Consensus 1141 Vtm~~ 1145 (1163)
T COG1196 1141 VTMQE 1145 (1163)
T ss_pred eEeec
Confidence 86543
No 53
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=96.40 E-value=1.2 Score=59.76 Aligned_cols=12 Identities=33% Similarity=0.191 Sum_probs=6.5
Q ss_pred hHHHHHHHHHHH
Q 001464 755 SLSALGDVIFAL 766 (1073)
Q Consensus 755 SLsaLg~VI~aL 766 (1073)
|..++..+..+|
T Consensus 1126 syLi~~~~~i~l 1137 (1201)
T PF12128_consen 1126 SYLILCMFFIAL 1137 (1201)
T ss_pred HHHHHHHHHHHH
Confidence 455555555554
No 54
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=96.35 E-value=1.4 Score=54.19 Aligned_cols=56 Identities=18% Similarity=0.194 Sum_probs=25.9
Q ss_pred HHHHHHHHhhhhccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhcccc
Q 001464 291 YKSRIRVLETLTVGTTEENQVVANQLERIKTEKTNIAQKEKLEEQNALRLKKENDD 346 (1073)
Q Consensus 291 ~~~~~~~le~l~~~~~ee~~~~~~~l~~l~~e~~k~eek~~~~e~~~~~l~ke~e~ 346 (1073)
.+-.++--++|.....+.+-.|.++++.||.-+.--+|-.++..+.+.++..+++.
T Consensus 479 LRAk~ke~etl~~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ae~~r 534 (961)
T KOG4673|consen 479 LRAKIKEAETLEEKKGELITKLQSEENKLKSILRDKEETEKLLQETIEKHQAELTR 534 (961)
T ss_pred HHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555555554432222222233344445555555443
No 55
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.32 E-value=0.46 Score=59.97 Aligned_cols=27 Identities=22% Similarity=0.434 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001464 378 ETKIESQKKLQELERLLTVSKKKVEEL 404 (1073)
Q Consensus 378 ~~k~ele~~l~e~e~~l~~~~~~v~~l 404 (1073)
..+.+||.+++.++.+|....+++..+
T Consensus 545 ~r~~~lE~E~~~lr~elk~kee~~~~~ 571 (697)
T PF09726_consen 545 QRRRQLESELKKLRRELKQKEEQIREL 571 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444333333333
No 56
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=96.32 E-value=2 Score=56.72 Aligned_cols=12 Identities=25% Similarity=0.648 Sum_probs=7.9
Q ss_pred HHHHhHhccccc
Q 001464 814 LKFAERVSGVEL 825 (1073)
Q Consensus 814 LrFA~Rak~I~~ 825 (1073)
+.+|.++-+|..
T Consensus 1155 ~~~~d~~~~~~~ 1166 (1179)
T TIGR02168 1155 MEVADQLYGVTM 1166 (1179)
T ss_pred HHHhhhHeeeee
Confidence 346888877653
No 57
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=96.30 E-value=1.5 Score=56.83 Aligned_cols=31 Identities=35% Similarity=0.438 Sum_probs=18.0
Q ss_pred HHHHHHhhhcccchhHHHHHHHHHHHHHHHH
Q 001464 334 EQNALRLKKENDDRDIEISTLKQDLELAKRT 364 (1073)
Q Consensus 334 e~~~~~l~ke~e~~~~e~~~Lk~ele~~k~~ 364 (1073)
|..+..+..+.+..+.|+..+++.+..+++.
T Consensus 322 ea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re 352 (1074)
T KOG0250|consen 322 EAKIGELKDEVDAQDEEIEEARKDLDDLRRE 352 (1074)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 3444555555556666666666666665553
No 58
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.25 E-value=1.4 Score=59.78 Aligned_cols=44 Identities=7% Similarity=0.037 Sum_probs=26.1
Q ss_pred HHHHHHHHhHHhHHHhhHHHHHHHHHHHHHhHHHHHHHHHhhHH
Q 001464 413 QRWKRIEHSYQSFMGCQLGVIQDLRVAFESTKHEVLETKKNYSK 456 (1073)
Q Consensus 413 ~~~~~~~~~~~~~l~~Q~~~l~el~~~~~~~k~ei~~~~~~~~~ 456 (1073)
..|+..-..+...+..+...+++++..+..+..++...+..+.+
T Consensus 884 ~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 927 (1311)
T TIGR00606 884 QQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEE 927 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 44555555555566666666666666666666666665555543
No 59
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=96.22 E-value=1.6 Score=58.61 Aligned_cols=10 Identities=20% Similarity=-0.174 Sum_probs=4.7
Q ss_pred ccchhHHHHH
Q 001464 599 DWGVNYRALN 608 (1073)
Q Consensus 599 ~~GIipRal~ 608 (1073)
.+|.++.+++
T Consensus 588 ~~g~~~~a~d 597 (1163)
T COG1196 588 APGFLGLASD 597 (1163)
T ss_pred ccchhHHHHH
Confidence 3455554443
No 60
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.15 E-value=5 Score=49.04 Aligned_cols=90 Identities=18% Similarity=0.173 Sum_probs=42.3
Q ss_pred hHHHHHHHHHHhcCCCCCC--------CCccHHHHHHHchhhHHHHHHHhhhcCCCccCCCCCCCCcccHHHHHHHHHhC
Q 001464 31 QLSTLVEWLNEMIPHIHLP--------FEASEEKLRACLVDGTVLCLVLNKLSPDSVEMGANFEPGPANVKRFLAAMDDM 102 (1073)
Q Consensus 31 r~~e~~~Wie~vlg~~~lp--------~~~s~edl~~~LrDGviLC~L~N~l~Pgsv~k~~~~~~~~eNI~~FL~ac~~~ 102 (1073)
=++++.+-|...|-.-.++ ..|+.-||.+. +--|-+.|.|+.--. ...=|-|-+||+. +
T Consensus 71 ~~s~c~~~I~~fL~engf~~~iS~k~l~~PS~KdF~~i------FkfLY~~Ldp~y~f~----~r~EeEV~~ilK~---L 137 (581)
T KOG0995|consen 71 YRSQCIRQIYNFLVENGFSHPISIKLLMKPSVKDFIAI------FKFLYGFLDPDYEFP----ERIEEEVVQILKN---L 137 (581)
T ss_pred HHHHHHHHHHHHHHHcCCCCChhhhhcCCCccccHHHH------HHHHHhccCCCcccc----hhHHHHHHHHHHh---C
Confidence 3667777777666422222 23455556542 335556666654410 1111244444443 4
Q ss_pred CCCC-Cccccc-cC---CCchhHHHHHHHHHhhhhc
Q 001464 103 GLPR-FELSDL-EQ---GNMAPVLQCLRSLRASFSF 133 (1073)
Q Consensus 103 Gvp~-Fe~~DL-E~---~n~~~Vv~cL~aL~~~~~~ 133 (1073)
|-|= -.-+-+ -. .+-+.++..|+.|-+....
T Consensus 138 ~YPf~~siSs~~a~gspH~WP~iL~mlhWlvdlI~~ 173 (581)
T KOG0995|consen 138 KYPFLLSISSLQAAGSPHNWPHILGMLHWLVDLIRI 173 (581)
T ss_pred CCCcccchhhhccCCCCCccHHHHHHHHHHHHHHHH
Confidence 4443 111222 11 1556666666666655543
No 61
>PRK11637 AmiB activator; Provisional
Probab=96.14 E-value=3.3 Score=49.46 Aligned_cols=13 Identities=23% Similarity=0.388 Sum_probs=8.7
Q ss_pred CCCccEEEEEEEe
Q 001464 700 SRSHSILTIHVRG 712 (1073)
Q Consensus 700 SRSH~IftI~V~~ 712 (1073)
...|+.|.|+..+
T Consensus 405 ~~~~l~fei~~~~ 417 (428)
T PRK11637 405 GRPSLYFEIRRQG 417 (428)
T ss_pred CCCeEEEEEEECC
Confidence 3568888777643
No 62
>PRK11637 AmiB activator; Provisional
Probab=96.11 E-value=2.1 Score=51.18 Aligned_cols=21 Identities=33% Similarity=0.653 Sum_probs=9.8
Q ss_pred hcCc-ceeEEeecccCCCCCeeeecC
Q 001464 568 LDGY-NVCIFAYGQTGSGKTYTMSGP 592 (1073)
Q Consensus 568 LdGy-N~~IfAYGQTGSGKTyTM~G~ 592 (1073)
+.|| |+.|+-.|. | .+|++|.
T Consensus 356 ~~~~G~~vii~hg~---g-~~t~Y~~ 377 (428)
T PRK11637 356 LQGYGLVVVVEHGK---G-DMSLYGY 377 (428)
T ss_pred cCCcccEEEEEeCC---C-cEEEccC
Confidence 3444 344444442 2 5666663
No 63
>PRK02224 chromosome segregation protein; Provisional
Probab=96.06 E-value=3.6 Score=53.35 Aligned_cols=14 Identities=14% Similarity=0.176 Sum_probs=11.1
Q ss_pred hHHHHHHHHHHhcC
Q 001464 31 QLSTLVEWLNEMIP 44 (1073)
Q Consensus 31 r~~e~~~Wie~vlg 44 (1073)
...++..||..++|
T Consensus 110 ~~~~~~~~i~~llg 123 (880)
T PRK02224 110 GARDVREEVTELLR 123 (880)
T ss_pred ChHHHHHHHHHHHC
Confidence 44578889999988
No 64
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=96.03 E-value=3 Score=46.72 Aligned_cols=94 Identities=24% Similarity=0.354 Sum_probs=54.0
Q ss_pred hHHHHHHHHHHHhhhhccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHH
Q 001464 287 REEKYKSRIRVLETLTVGTTEENQVVANQLERIKTEKTNIAQKEKLEEQNALRLKKENDDRDIEISTLKQDLELAKRTHE 366 (1073)
Q Consensus 287 ~~~~~~~~~~~le~l~~~~~ee~~~~~~~l~~l~~e~~k~eek~~~~e~~~~~l~ke~e~~~~e~~~Lk~ele~~k~~~e 366 (1073)
+-+.|..=+.+|+. .. .+++++.+.|.+.|+++. +.++..|.++.+..+..|....+||..+. +|.
T Consensus 46 qy~~~~~~i~~le~---~~-------~~~l~~ak~eLqe~eek~---e~~l~~Lq~ql~~l~akI~k~~~el~~L~-TYk 111 (258)
T PF15397_consen 46 QYDIYRTAIDILEY---SN-------HKQLQQAKAELQEWEEKE---ESKLSKLQQQLEQLDAKIQKTQEELNFLS-TYK 111 (258)
T ss_pred HHHHHHHHHHHHHc---cC-------hHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHh
Confidence 44555555555554 11 134555666777787754 56677788888887777777777777655 233
Q ss_pred H--------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001464 367 L--------HCLQLEEQIYETKIESQKKLQELERLL 394 (1073)
Q Consensus 367 ~--------~~~~le~~~~~~k~ele~~l~e~e~~l 394 (1073)
. ++..|..+....+...+..+.++....
T Consensus 112 D~EYPvK~vqIa~L~rqlq~lk~~qqdEldel~e~~ 147 (258)
T PF15397_consen 112 DHEYPVKAVQIANLVRQLQQLKDSQQDELDELNEMR 147 (258)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 244444444444444444444444433
No 65
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=96.02 E-value=4.3 Score=50.66 Aligned_cols=30 Identities=13% Similarity=0.364 Sum_probs=15.2
Q ss_pred hhhhHHHhhhhhHHHhhHHHHHHHHHHHhh
Q 001464 271 ATQYQNFKNQNNLFRAREEKYKSRIRVLET 300 (1073)
Q Consensus 271 s~q~~~~~~q~~~~~~~~~~~~~~~~~le~ 300 (1073)
....++|..|++-++...+.+...++.+..
T Consensus 327 ~~el~~l~~~l~~l~~~i~~~~~~~~~l~~ 356 (594)
T PF05667_consen 327 EQELEELQEQLDELESQIEELEAEIKMLKS 356 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555444443333
No 66
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.02 E-value=1.6 Score=54.31 Aligned_cols=11 Identities=18% Similarity=0.326 Sum_probs=6.0
Q ss_pred HHHHHHHHHHh
Q 001464 260 RKVVPLIERRT 270 (1073)
Q Consensus 260 ~kvv~e~e~ri 270 (1073)
|++++|=++|=
T Consensus 333 Rq~leeqqqre 343 (1118)
T KOG1029|consen 333 RQALEEQQQRE 343 (1118)
T ss_pred HHHHHHHHHHH
Confidence 55555555553
No 67
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=95.97 E-value=3 Score=57.77 Aligned_cols=79 Identities=16% Similarity=0.262 Sum_probs=39.2
Q ss_pred hHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001464 325 NIAQKEKLEEQNALRLKKENDDRDIEISTLKQDLELAKRTHELHCLQLEEQIYETKIESQKKLQELERLLTVSKKKVEEL 404 (1073)
Q Consensus 325 k~eek~~~~e~~~~~l~ke~e~~~~e~~~Lk~ele~~k~~~e~~~~~le~~~~~~k~ele~~l~e~e~~l~~~~~~v~~l 404 (1073)
.++...+-.+.++.++..+.++...++..|..++..+.....+-..+++.. +...++++++..|+..+++.++.++++.
T Consensus 1066 el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~e-r~~r~K~ek~r~dL~~ele~l~~~Lee~ 1144 (1930)
T KOG0161|consen 1066 ELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAE-RASRAKAERQRRDLSEELEELKEELEEQ 1144 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444555555555555555555555544444444434444433 2334555666666666666665555543
No 68
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.93 E-value=2.5 Score=55.00 Aligned_cols=42 Identities=14% Similarity=0.081 Sum_probs=25.9
Q ss_pred HHHHHHHHHhCCCCC----Cccccc-cCC-CchhHHHHHHHHHhhhhcc
Q 001464 92 VKRFLAAMDDMGLPR----FELSDL-EQG-NMAPVLQCLRSLRASFSFC 134 (1073)
Q Consensus 92 I~~FL~ac~~~Gvp~----Fe~~DL-E~~-n~~~Vv~cL~aL~~~~~~k 134 (1073)
+.||=..+-.-=|-+ |.+. + -+| .=..||+.++=.++|-..|
T Consensus 91 ~~NFKSYaG~~ilGPFHksFtaI-vGPNGSGKSNVIDsmLFVFGfRA~k 138 (1293)
T KOG0996|consen 91 VENFKSYAGKQILGPFHKSFTAI-VGPNGSGKSNVIDSMLFVFGFRASK 138 (1293)
T ss_pred hhhhhhhcCceeecCCCCCceee-ECCCCCCchHHHHHHHHHhhhhHhH
Confidence 367777774333444 5544 3 334 4678999988777776554
No 69
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=95.90 E-value=1 Score=52.71 Aligned_cols=44 Identities=25% Similarity=0.332 Sum_probs=37.3
Q ss_pred cHHHHHHHHHhCCCCC-CccccccCCCchhHHHHHHHHHhhhhcc
Q 001464 91 NVKRFLAAMDDMGLPR-FELSDLEQGNMAPVLQCLRSLRASFSFC 134 (1073)
Q Consensus 91 NI~~FL~ac~~~Gvp~-Fe~~DLE~~n~~~Vv~cL~aL~~~~~~k 134 (1073)
=|.+-|.+|+.+|+|. |.++=|-.|.-..|+..|-.|...+-.+
T Consensus 72 ~~~~Il~~lr~~g~~~df~p~kLk~G~Ge~vc~VLd~Lad~AL~~ 116 (359)
T PF10498_consen 72 TISNILDELRKLGVPVDFPPSKLKQGSGEHVCYVLDQLADEALKR 116 (359)
T ss_pred HHHHHHHHHHccCCCCCCChHHhhCCCCHHHHHHHHHHHHHHHHh
Confidence 4678899999999999 9999998888888888888887777653
No 70
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=95.83 E-value=4.1 Score=45.61 Aligned_cols=117 Identities=17% Similarity=0.211 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHhhhhhHHHhhhhhHHHhhHHHHHHHHHHHhhhhccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 001464 258 LLRKVVPLIERRTATQYQNFKNQNNLFRAREEKYKSRIRVLETLTVGTTEENQVVANQLERIKTEKTNIAQKEKLEEQNA 337 (1073)
Q Consensus 258 ~l~kvv~e~e~ris~q~~~~~~q~~~~~~~~~~~~~~~~~le~l~~~~~ee~~~~~~~l~~l~~e~~k~eek~~~~e~~~ 337 (1073)
.+..+|.-||.+-.++.+..+..++-++.++++ ++..|..++++|+....+..+....+.-..
T Consensus 49 ~~~~~i~~le~~~~~~l~~ak~eLqe~eek~e~-----------------~l~~Lq~ql~~l~akI~k~~~el~~L~TYk 111 (258)
T PF15397_consen 49 IYRTAIDILEYSNHKQLQQAKAELQEWEEKEES-----------------KLSKLQQQLEQLDAKIQKTQEELNFLSTYK 111 (258)
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHHHHh-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455555556666666665555543333333222 334455555555555444444333222111
Q ss_pred HHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001464 338 LRLKKENDDRDIEISTLKQDLELAKRTHELHCLQLEEQIYETKIESQKKLQELERLL 394 (1073)
Q Consensus 338 ~~l~ke~e~~~~e~~~Lk~ele~~k~~~e~~~~~le~~~~~~k~ele~~l~e~e~~l 394 (1073)
+ +|---....|..|..+|+.++..++.+..++...++.....++.+.+.-+..+
T Consensus 112 D---~EYPvK~vqIa~L~rqlq~lk~~qqdEldel~e~~~~el~~l~~~~q~k~~~i 165 (258)
T PF15397_consen 112 D---HEYPVKAVQIANLVRQLQQLKDSQQDELDELNEMRQMELASLSRKIQEKKEEI 165 (258)
T ss_pred h---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 22223456889999999999999999888888877766666666666554443
No 71
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.73 E-value=3.4 Score=56.23 Aligned_cols=28 Identities=11% Similarity=0.227 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001464 379 TKIESQKKLQELERLLTVSKKKVEELES 406 (1073)
Q Consensus 379 ~k~ele~~l~e~e~~l~~~~~~v~~le~ 406 (1073)
.+..++.++.++..+++.+...+++++.
T Consensus 882 ~r~~le~~L~el~~el~~l~~~~~~~~~ 909 (1311)
T TIGR00606 882 RRQQFEEQLVELSTEVQSLIREIKDAKE 909 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666655555555555433
No 72
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=95.69 E-value=6.1 Score=50.32 Aligned_cols=43 Identities=19% Similarity=0.078 Sum_probs=24.0
Q ss_pred HHHHHchhhHHHHHHHhhhcCCCccCCCCCCCCcccHHHHHHHHH
Q 001464 56 KLRACLVDGTVLCLVLNKLSPDSVEMGANFEPGPANVKRFLAAMD 100 (1073)
Q Consensus 56 dl~~~LrDGviLC~L~N~l~Pgsv~k~~~~~~~~eNI~~FL~ac~ 100 (1073)
.|..+.==||||=...-+ .-|+|... .||..-+|-+.|...-.
T Consensus 30 ~FA~G~WvGVvLDep~GK-NnGsVqg~-qYF~Cd~ncG~FVr~sq 72 (1243)
T KOG0971|consen 30 QFAEGKWVGVVLDEPKGK-NNGSVQGV-QYFECDENCGVFVRSSQ 72 (1243)
T ss_pred ccccCceEEEEeccccCC-CCCcccce-eeEecCCCcceEeehhh
Confidence 466666666666543333 23666333 33333668888877654
No 73
>PRK03918 chromosome segregation protein; Provisional
Probab=95.61 E-value=9.7 Score=49.39 Aligned_cols=10 Identities=40% Similarity=0.441 Sum_probs=5.4
Q ss_pred hHHHHHHHHH
Q 001464 231 SLFNIVNRIL 240 (1073)
Q Consensus 231 ~l~~~~~~~l 240 (1073)
....++..|+
T Consensus 146 ~r~~~~~~~~ 155 (880)
T PRK03918 146 SREKVVRQIL 155 (880)
T ss_pred HHHHHHHHHh
Confidence 4455555555
No 74
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=95.58 E-value=1.5 Score=58.95 Aligned_cols=127 Identities=24% Similarity=0.311 Sum_probs=62.3
Q ss_pred HHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------
Q 001464 334 EQNALRLKKENDDRDIEISTLKQDLELAKRTHELHCLQLEEQIYETKIESQKKLQELERLLTVSKKKVEELESL------ 407 (1073)
Q Consensus 334 e~~~~~l~ke~e~~~~e~~~Lk~ele~~k~~~e~~~~~le~~~~~~k~ele~~l~e~e~~l~~~~~~v~~le~~------ 407 (1073)
...+..+.++......+....+.+++.++........+.+...++.+...++++.+++..+.....+++.+.+.
T Consensus 634 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~e~~~~~~~~~~~~~ 713 (1201)
T PF12128_consen 634 NKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAKEERKEQIEEQLNELEEELKQLKQELEELLEELKEQLK 713 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444445555555555555544444555555555556666666666666665555555543222
Q ss_pred --hhhhhHHHHHHHHhHHhHHHhhHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHhhhh
Q 001464 408 --SESKSQRWKRIEHSYQSFMGCQLGVIQDLRVAFESTKHEVLETKKNYSKEFDCLGL 463 (1073)
Q Consensus 408 --~~~~~~~~~~~~~~~~~~l~~Q~~~l~el~~~~~~~k~ei~~~~~~~~~e~~~l~~ 463 (1073)
.......|......+...++.....++..+.. .+.++..+.+.|..++...|.
T Consensus 714 e~~~e~~~~~~~~~~~~d~~i~~i~~~i~~~~~~---~~~~~~~le~~~~~eL~~~Gv 768 (1201)
T PF12128_consen 714 ELRNELKAQWQELEAELDEQIEQIKQEIAAAKQE---AKEQLKELEQQYNQELAGKGV 768 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhCCC
Confidence 11223445555555555544444444444333 344444445555555544443
No 75
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=95.58 E-value=2.7 Score=45.75 Aligned_cols=84 Identities=15% Similarity=0.179 Sum_probs=44.7
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001464 315 QLERIKTEKTNIAQKEKLEEQNALRLKKENDDRDIEISTLKQDLELAKRT---HELHCLQLEEQIYETKIESQKKLQELE 391 (1073)
Q Consensus 315 ~l~~l~~e~~k~eek~~~~e~~~~~l~ke~e~~~~e~~~Lk~ele~~k~~---~e~~~~~le~~~~~~k~ele~~l~e~e 391 (1073)
.+.++..|+....+.....|.-+..|++.-+.....+..++..=+.++++ |.....+.+.....++...+.+|.-..
T Consensus 70 ~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~hAeekL~~AN 149 (207)
T PF05010_consen 70 EIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALKAHAEEKLEKAN 149 (207)
T ss_pred HHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555566666666666666666666666655555544 334444444444455555555555444
Q ss_pred HHHHHHH
Q 001464 392 RLLTVSK 398 (1073)
Q Consensus 392 ~~l~~~~ 398 (1073)
.++..++
T Consensus 150 eei~~v~ 156 (207)
T PF05010_consen 150 EEIAQVR 156 (207)
T ss_pred HHHHHHH
Confidence 4444333
No 76
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=95.56 E-value=5.8 Score=45.17 Aligned_cols=24 Identities=17% Similarity=0.394 Sum_probs=11.9
Q ss_pred hHHHHHHHHHHHHHHhhhHHHHHH
Q 001464 308 ENQVVANQLERIKTEKTNIAQKEK 331 (1073)
Q Consensus 308 e~~~~~~~l~~l~~e~~k~eek~~ 331 (1073)
+...+.+++++++.++..+-.+..
T Consensus 63 ~rdeineev~elK~kR~ein~kl~ 86 (294)
T COG1340 63 ERDEINEEVQELKEKRDEINAKLQ 86 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555554444433
No 77
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=95.53 E-value=2.8 Score=47.88 Aligned_cols=146 Identities=17% Similarity=0.156 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHH-HHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001464 311 VVANQLERIKTEKTNIAQKEKLEE-QNALRLKKENDDRDIEISTLKQDLELAKRTHELHCLQLEEQIYETKIESQKKLQE 389 (1073)
Q Consensus 311 ~~~~~l~~l~~e~~k~eek~~~~e-~~~~~l~ke~e~~~~e~~~Lk~ele~~k~~~e~~~~~le~~~~~~k~ele~~l~e 389 (1073)
.|...|.+|..||..++....-+. --|.+|++.......+...+..+|+.++..--.+...||..-+-....|-+++..
T Consensus 110 ~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~ 189 (310)
T PF09755_consen 110 DLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEELERLRREKVDLENTLEQEQEALVNRLWKQMDK 189 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556667777766655444322 2266777777777777777777777666543334445555444455556666666
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHH-HHHHHhHHhHHHhhHHHHHHHHHHHHHhHHHHHHHHHhhHHHHH
Q 001464 390 LERLLTVSKKKVEELESLSESKSQRW-KRIEHSYQSFMGCQLGVIQDLRVAFESTKHEVLETKKNYSKEFD 459 (1073)
Q Consensus 390 ~e~~l~~~~~~v~~le~~~~~~~~~~-~~~~~~~~~~l~~Q~~~l~el~~~~~~~k~ei~~~~~~~~~e~~ 459 (1073)
+..+...+..++..--+.-.+..+.. ..... ...+.=...++.|+..+..+++.+...+..+.....
T Consensus 190 l~~eKr~Lq~~l~~~~s~~~s~~d~~~~~~~~---Dt~e~~~shI~~Lr~EV~RLR~qL~~sq~e~~~k~~ 257 (310)
T PF09755_consen 190 LEAEKRRLQEKLEQPVSAPPSPRDTVNVSEEN---DTAERLSSHIRSLRQEVSRLRQQLAASQQEHSEKMA 257 (310)
T ss_pred HHHHHHHHHHHHccccCCCCCcchHHhhcccC---CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66655555554432111101111100 00000 011111234667777777777777777666555443
No 78
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=95.50 E-value=5.4 Score=48.93 Aligned_cols=17 Identities=24% Similarity=0.003 Sum_probs=8.9
Q ss_pred EEEEEEecceeeeccCC
Q 001464 627 VQMVEIYNEQVRDLLSS 643 (1073)
Q Consensus 627 vS~lEIYnE~V~DLL~~ 643 (1073)
|.+.|+|-+--+=++..
T Consensus 439 v~i~e~d~~gk~i~~~n 455 (546)
T KOG0977|consen 439 VAIHECDPEGKFIRLNN 455 (546)
T ss_pred cceeecccccceeeecc
Confidence 34556665555545543
No 79
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.49 E-value=6.8 Score=51.33 Aligned_cols=35 Identities=23% Similarity=0.363 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHhhhhhHHHhhhhhHHHhhHHHHH
Q 001464 258 LLRKVVPLIERRTATQYQNFKNQNNLFRAREEKYK 292 (1073)
Q Consensus 258 ~l~kvv~e~e~ris~q~~~~~~q~~~~~~~~~~~~ 292 (1073)
+-.+-..-||+..-.-.+-|...|++++.+...+|
T Consensus 292 ~~e~ek~~lE~~k~~al~fL~kenel~~~~~~~~q 326 (1293)
T KOG0996|consen 292 LVEKEKKALEGPKNEALEFLKKENELFRKKNKLCQ 326 (1293)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555677766666666666677665555543
No 80
>PRK02224 chromosome segregation protein; Provisional
Probab=95.44 E-value=7.9 Score=50.33 Aligned_cols=15 Identities=13% Similarity=0.363 Sum_probs=7.8
Q ss_pred cchhhhhcccCCCCC
Q 001464 195 TFHDVLHLKEGGYTD 209 (1073)
Q Consensus 195 ~~~~~~~~~~~~~~~ 209 (1073)
.|...+-+.||....
T Consensus 128 ~f~~~~~i~Qge~~~ 142 (880)
T PRK02224 128 AFVNCAYVRQGEVNK 142 (880)
T ss_pred HhcceeEeeccChHH
Confidence 344444456666544
No 81
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=95.41 E-value=8.1 Score=48.60 Aligned_cols=17 Identities=24% Similarity=0.104 Sum_probs=7.3
Q ss_pred CCHHHHHHHHHHHhHhc
Q 001464 805 DSYSETISTLKFAERVS 821 (1073)
Q Consensus 805 ~~~~ETlsTLrFA~Rak 821 (1073)
...++=--.|.=|++++
T Consensus 906 ~saerwA~CLq~aqk~r 922 (1265)
T KOG0976|consen 906 KSAERWALCLQDAQKVR 922 (1265)
T ss_pred ccHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 82
>PHA02562 46 endonuclease subunit; Provisional
Probab=95.27 E-value=7.8 Score=47.53 Aligned_cols=17 Identities=18% Similarity=0.261 Sum_probs=9.6
Q ss_pred chhHHHHHHHHHHHHhc
Q 001464 601 GVNYRALNDLFEISESR 617 (1073)
Q Consensus 601 GIipRal~~LF~~~~~~ 617 (1073)
|+-+.....++..+...
T Consensus 509 ~ld~~~~~~~~~~l~~~ 525 (562)
T PHA02562 509 ALDAEGTKALLSILDSL 525 (562)
T ss_pred ccchhHHHHHHHHHHhC
Confidence 45555666666655543
No 83
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=95.24 E-value=1.8 Score=55.40 Aligned_cols=109 Identities=17% Similarity=0.163 Sum_probs=45.1
Q ss_pred HHHHHhhhhccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001464 294 RIRVLETLTVGTTEENQVVANQLERIKTEKTNIAQKEKLEEQNALRLKKENDDRDIEISTLKQDLELAKRTHELHCLQLE 373 (1073)
Q Consensus 294 ~~~~le~l~~~~~ee~~~~~~~l~~l~~e~~k~eek~~~~e~~~~~l~ke~e~~~~e~~~Lk~ele~~k~~~e~~~~~le 373 (1073)
.|+.|+.=.....+.+..++++|+.+++|-+++.+ +.++......-..++.-|+..|++..+..-.+|.....+.+
T Consensus 185 kir~LrqElEEK~enll~lr~eLddleae~~klrq----e~~e~l~ea~ra~~yrdeldalre~aer~d~~ykerlmDs~ 260 (1195)
T KOG4643|consen 185 KIRTLRQELEEKFENLLRLRNELDDLEAEISKLRQ----EIEEFLDEAHRADRYRDELDALREQAERPDTTYKERLMDSD 260 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhhhhhhHHHHHHHhhhcCCCccchhhhhhH
Confidence 34444443333333344444455544444443322 22222233333334444444455444444444444443332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001464 374 EQIYETKIESQKKLQELERLLTVSKKKVEELESL 407 (1073)
Q Consensus 374 ~~~~~~k~ele~~l~e~e~~l~~~~~~v~~le~~ 407 (1073)
. +++.-.+|++..+-+-.+.+.++.++..+++.
T Consensus 261 f-ykdRveelkedN~vLleekeMLeeQLq~lrar 293 (1195)
T KOG4643|consen 261 F-YKDRVEELKEDNRVLLEEKEMLEEQLQKLRAR 293 (1195)
T ss_pred H-HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhc
Confidence 2 22333344444444444445555555544443
No 84
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.16 E-value=8 Score=49.94 Aligned_cols=34 Identities=21% Similarity=0.275 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHhhhhccchhhHHHHHHHHHHHHH
Q 001464 288 EEKYKSRIRVLETLTVGTTEENQVVANQLERIKT 321 (1073)
Q Consensus 288 ~~~~~~~~~~le~l~~~~~ee~~~~~~~l~~l~~ 321 (1073)
.+..+.+|.-+..-...+..|++.++.+++.++.
T Consensus 253 i~e~~~~i~~l~e~~~k~~~ei~~le~~ikei~~ 286 (1174)
T KOG0933|consen 253 IEEMKDKIAKLDESLGKTDKEIESLEKEIKEIEQ 286 (1174)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3444555555555455555666666666665543
No 85
>PF06395 CDC24: CDC24 Calponin; InterPro: IPR010481 This is a calponin homology domain.
Probab=95.16 E-value=0.048 Score=51.37 Aligned_cols=73 Identities=22% Similarity=0.475 Sum_probs=54.7
Q ss_pred HHHHHHchhhHHHHHHHhhhcCCCccCCCCCCC-----CcccHHHHHHHH-HhCCCCC---Cccccc--cCC-CchhHHH
Q 001464 55 EKLRACLVDGTVLCLVLNKLSPDSVEMGANFEP-----GPANVKRFLAAM-DDMGLPR---FELSDL--EQG-NMAPVLQ 122 (1073)
Q Consensus 55 edl~~~LrDGviLC~L~N~l~Pgsv~k~~~~~~-----~~eNI~~FL~ac-~~~Gvp~---Fe~~DL--E~~-n~~~Vv~ 122 (1073)
..|-..+|-|.=||-|-|.++|..--.+..... .-..|-.|+.|| .++|+|+ |..+|| +.. .+.+|+.
T Consensus 4 t~LW~~fr~G~PLc~lfNal~p~~~L~v~~~~~~~~k~~K~ai~~Fi~ack~~L~~~~~e~FtIsdl~~~dT~gfvKVi~ 83 (89)
T PF06395_consen 4 TQLWKLFRQGYPLCVLFNALQPEEPLPVDPVSSDDLKVCKKAIYKFIQACKQELGFPDEELFTISDLYGDDTNGFVKVIK 83 (89)
T ss_pred HHHHHHHhCcCcHHHHHHccCCccCCCCCCCCcchHHHHHHHHHHHHHHHHHhcCCCccceeeeeccccCCCcchhhHHH
Confidence 357889999999999999999975322211111 012678999999 6799998 999999 433 6999999
Q ss_pred HHHHH
Q 001464 123 CLRSL 127 (1073)
Q Consensus 123 cL~aL 127 (1073)
.+..|
T Consensus 84 ~V~~v 88 (89)
T PF06395_consen 84 VVNRV 88 (89)
T ss_pred HHHhh
Confidence 88654
No 86
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=95.01 E-value=11 Score=47.30 Aligned_cols=16 Identities=19% Similarity=0.403 Sum_probs=8.0
Q ss_pred HHHHHHHHHhhhhhhh
Q 001464 473 EKYHVILAENRRLYNE 488 (1073)
Q Consensus 473 ~~y~~~l~erRkL~N~ 488 (1073)
..|+....++-.||++
T Consensus 244 a~~q~l~~e~e~L~~q 259 (617)
T PF15070_consen 244 AAYQQLASEKEELHKQ 259 (617)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455555555555544
No 87
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=94.99 E-value=11 Score=49.30 Aligned_cols=17 Identities=12% Similarity=0.276 Sum_probs=11.3
Q ss_pred EEEecCHHHHHHHHHhh
Q 001464 668 MYSVQSTADVLELMNIG 684 (1073)
Q Consensus 668 ~~vvss~eev~~lL~~G 684 (1073)
...+.+-.++..+|..+
T Consensus 599 ~lLiEdk~Ea~~~m~s~ 615 (1074)
T KOG0250|consen 599 VLLIEDKKEAREFMQSD 615 (1074)
T ss_pred EEEecchHHHHHHHhcC
Confidence 34455557888888766
No 88
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=94.81 E-value=6.6 Score=51.20 Aligned_cols=30 Identities=23% Similarity=0.588 Sum_probs=17.4
Q ss_pred cchHH---HHHHHHHhHhhhhcCCCCchHHHHHHHHHHH
Q 001464 229 TKSLF---NIVNRILDECVERKNGDAPHRVACLLRKVVP 264 (1073)
Q Consensus 229 ~~~l~---~~~~~~l~~~~~~~~~~~~~~~~~~l~kvv~ 264 (1073)
-|||+ .|+|++.+ +-++||+| ++-|-...|
T Consensus 320 NqSLLTLGRVInALVe-----~s~HIPYR-ESKLTRLLQ 352 (1041)
T KOG0243|consen 320 NQSLLTLGRVINALVE-----HSGHIPYR-ESKLTRLLQ 352 (1041)
T ss_pred hHHHHHHHHHHHHHHc-----cCCCCCch-HHHHHHHHH
Confidence 35666 45555554 46799997 444444433
No 89
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=94.78 E-value=5.2 Score=49.91 Aligned_cols=25 Identities=32% Similarity=0.562 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHhhhhhhhhhhccCC
Q 001464 471 AAEKYHVILAENRRLYNEVQDLKGN 495 (1073)
Q Consensus 471 ~~~~y~~~l~erRkL~N~vqeLKGn 495 (1073)
..+...+++..-|.|-.++..+.|.
T Consensus 503 Qk~eI~KIl~DTr~lQkeiN~l~gk 527 (594)
T PF05667_consen 503 QKEEIEKILSDTRELQKEINSLTGK 527 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555666677777777666653
No 90
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=94.76 E-value=9.2 Score=49.30 Aligned_cols=18 Identities=17% Similarity=0.248 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHhhhhhH
Q 001464 258 LLRKVVPLIERRTATQYQ 275 (1073)
Q Consensus 258 ~l~kvv~e~e~ris~q~~ 275 (1073)
-+..+++.||-|+.+--+
T Consensus 188 kI~ell~yieerLreLEe 205 (1200)
T KOG0964|consen 188 KINELLKYIEERLRELEE 205 (1200)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456677778888776544
No 91
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=94.76 E-value=9.1 Score=50.41 Aligned_cols=17 Identities=41% Similarity=0.620 Sum_probs=13.5
Q ss_pred HHHHHHch---hhHHHHHHH
Q 001464 55 EKLRACLV---DGTVLCLVL 71 (1073)
Q Consensus 55 edl~~~Lr---DGviLC~L~ 71 (1073)
.||..||+ ||+|.|..+
T Consensus 217 ADFGsClkm~~dG~V~s~~a 236 (1317)
T KOG0612|consen 217 ADFGSCLKMDADGTVRSSVA 236 (1317)
T ss_pred ccchhHHhcCCCCcEEeccc
Confidence 47888875 999999765
No 92
>PRK04863 mukB cell division protein MukB; Provisional
Probab=94.72 E-value=6.9 Score=53.66 Aligned_cols=51 Identities=10% Similarity=0.083 Sum_probs=21.9
Q ss_pred HHHHHHHHhhHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhccCC
Q 001464 445 HEVLETKKNYSKEFDCLGLNLKRLIDAAEKYHVILAENRRLYNEVQDLKGN 495 (1073)
Q Consensus 445 ~ei~~~~~~~~~e~~~l~~~~~~l~~~~~~y~~~l~erRkL~N~vqeLKGn 495 (1073)
.++..+...|......+...+..+..........+..-++-++.+.-..|.
T Consensus 438 EeLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l~~~~Gk 488 (1486)
T PRK04863 438 DNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGE 488 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 334444444444444444444444333333333333334444555445554
No 93
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=94.69 E-value=20 Score=47.16 Aligned_cols=17 Identities=12% Similarity=0.380 Sum_probs=7.5
Q ss_pred hhhhhhhhhccCCEEEE
Q 001464 483 RRLYNEVQDLKGNIRVY 499 (1073)
Q Consensus 483 RkL~N~vqeLKGnIRV~ 499 (1073)
+++-.-++++++.+.+|
T Consensus 1738 ~r~~~vl~~I~~rv~~y 1754 (1758)
T KOG0994|consen 1738 KRVESVLDHINERVLYY 1754 (1758)
T ss_pred HHHHHHHHHHhhhhhhh
Confidence 33333344445544444
No 94
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=94.68 E-value=6.3 Score=50.20 Aligned_cols=32 Identities=28% Similarity=0.459 Sum_probs=22.8
Q ss_pred HHHHHHHhhhcccchhHHHHHHHHHHHHHHHH
Q 001464 333 EEQNALRLKKENDDRDIEISTLKQDLELAKRT 364 (1073)
Q Consensus 333 ~e~~~~~l~ke~e~~~~e~~~Lk~ele~~k~~ 364 (1073)
+.++..++.||+|..+.|++.|+..-|.+++.
T Consensus 394 ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~ 425 (1243)
T KOG0971|consen 394 EKQDHQKLQKELEKKNSELEELRRQKERLSRE 425 (1243)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 44566778888888888888777766666544
No 95
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=94.67 E-value=4.7 Score=55.23 Aligned_cols=82 Identities=30% Similarity=0.373 Sum_probs=35.0
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001464 316 LERIKTEKTNIAQKEKLEEQNALRLKKENDDRDIEISTLKQDLELAKRTHELHCLQLEEQIYETKIESQKKLQELERLLT 395 (1073)
Q Consensus 316 l~~l~~e~~k~eek~~~~e~~~~~l~ke~e~~~~e~~~Lk~ele~~k~~~e~~~~~le~~~~~~k~ele~~l~e~e~~l~ 395 (1073)
+..+..|.+.+.+.++++...-.+|..+.+..-.|...|..-+..++-.++. ++....+.+..++.++++++..++
T Consensus 740 ~~~le~ev~~LKqE~~ll~~t~~rL~~e~~~l~~e~~~L~~~l~~lQt~~~~----~e~s~~~~k~~~e~~i~eL~~el~ 815 (1822)
T KOG4674|consen 740 LEKLEAELSNLKQEKLLLKETEERLSQELEKLSAEQESLQLLLDNLQTQKNE----LEESEMATKDKCESRIKELERELQ 815 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444445555555544444555555544444444433333332222211 112222334445555555555555
Q ss_pred HHHHHH
Q 001464 396 VSKKKV 401 (1073)
Q Consensus 396 ~~~~~v 401 (1073)
.++.++
T Consensus 816 ~lk~kl 821 (1822)
T KOG4674|consen 816 KLKKKL 821 (1822)
T ss_pred HHHHHH
Confidence 544443
No 96
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=94.63 E-value=2.2 Score=47.22 Aligned_cols=94 Identities=21% Similarity=0.272 Sum_probs=42.8
Q ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001464 307 EENQVVANQLERIKTEKTNIAQKEKLEEQNALRLKKENDDRDIEISTLKQDLELAKRTHELHCLQLEEQIYETKIESQKK 386 (1073)
Q Consensus 307 ee~~~~~~~l~~l~~e~~k~eek~~~~e~~~~~l~ke~e~~~~e~~~Lk~ele~~k~~~e~~~~~le~~~~~~k~ele~~ 386 (1073)
.+.+.+.++..++..+..++.++.+-.+..+. .....+|..+|..++..+++.-.....++.. ..+...+++++
T Consensus 52 ~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~-----~v~~~~e~~aL~~E~~~ak~r~~~le~el~~-l~~~~~~l~~~ 125 (239)
T COG1579 52 IELEDLENQVSQLESEIQEIRERIKRAEEKLS-----AVKDERELRALNIEIQIAKERINSLEDELAE-LMEEIEKLEKE 125 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----ccccHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 34555566666666565566555554443221 1122344555555554444332222111111 12334455555
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001464 387 LQELERLLTVSKKKVEELES 406 (1073)
Q Consensus 387 l~e~e~~l~~~~~~v~~le~ 406 (1073)
+.++...+..+.+.+.++++
T Consensus 126 i~~l~~~~~~~e~~~~e~~~ 145 (239)
T COG1579 126 IEDLKERLERLEKNLAEAEA 145 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555554443
No 97
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.47 E-value=6 Score=47.00 Aligned_cols=78 Identities=21% Similarity=0.249 Sum_probs=43.9
Q ss_pred hHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Q 001464 325 NIAQKEKLEEQNALRLKKENDDRDIEISTLKQDLELAKRTHELHCLQLEEQIYETKIES--QKKLQELERLLTVSKKKVE 402 (1073)
Q Consensus 325 k~eek~~~~e~~~~~l~ke~e~~~~e~~~Lk~ele~~k~~~e~~~~~le~~~~~~k~el--e~~l~e~e~~l~~~~~~v~ 402 (1073)
++-+.+.-.+.++.+|+......+..+.+|+++-+..+........+|....+....+- =.++++++..|+....+++
T Consensus 283 rl~e~l~dgeayLaKL~~~l~~~~~~~~~ltqqwed~R~pll~kkl~Lr~~l~~~e~e~~e~~~IqeleqdL~a~~eei~ 362 (521)
T KOG1937|consen 283 RLIEALDDGEAYLAKLMGKLAELNKQMEELTQQWEDTRQPLLQKKLQLREELKNLETEDEEIRRIQELEQDLEAVDEEIE 362 (521)
T ss_pred HHHHhcCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344566778888888777777888888877777665544444433322211111 1345555555555555444
No 98
>PRK01156 chromosome segregation protein; Provisional
Probab=94.30 E-value=22 Score=46.52 Aligned_cols=24 Identities=13% Similarity=0.062 Sum_probs=14.0
Q ss_pred HhhhhhhhhhhccCCEEEEeecCCC
Q 001464 481 ENRRLYNEVQDLKGNIRVYCRIRPF 505 (1073)
Q Consensus 481 erRkL~N~vqeLKGnIRV~~RVRP~ 505 (1073)
+.+.-.+++....|.+. .|=++|.
T Consensus 434 ~l~~~~~el~~~~~~l~-~~~~Cp~ 457 (895)
T PRK01156 434 ALRENLDELSRNMEMLN-GQSVCPV 457 (895)
T ss_pred HHHHHHHHHHHHHHhhc-cCCCCCC
Confidence 33444455665556666 4777774
No 99
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=94.21 E-value=10 Score=43.90 Aligned_cols=27 Identities=26% Similarity=0.434 Sum_probs=12.8
Q ss_pred hHHHHHHHHHHHhhhhccchhhHHHHH
Q 001464 287 REEKYKSRIRVLETLTVGTTEENQVVA 313 (1073)
Q Consensus 287 ~~~~~~~~~~~le~l~~~~~ee~~~~~ 313 (1073)
+..=|.=|.+.++.|..+..+..+.+.
T Consensus 136 K~~WYeWR~~ll~gl~~~L~~~~~~L~ 162 (325)
T PF08317_consen 136 KKMWYEWRMQLLEGLKEGLEENLELLQ 162 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555544444444333
No 100
>PRK03918 chromosome segregation protein; Provisional
Probab=94.09 E-value=11 Score=48.77 Aligned_cols=11 Identities=36% Similarity=1.108 Sum_probs=6.1
Q ss_pred HHHHHHHHhcC
Q 001464 34 TLVEWLNEMIP 44 (1073)
Q Consensus 34 e~~~Wie~vlg 44 (1073)
++..||..+++
T Consensus 112 ~~~~~i~~~~~ 122 (880)
T PRK03918 112 SVREWVERLIP 122 (880)
T ss_pred HHHHHHHHhcC
Confidence 45556666555
No 101
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=94.01 E-value=21 Score=44.24 Aligned_cols=161 Identities=19% Similarity=0.215 Sum_probs=76.9
Q ss_pred HHHHhhhHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001464 319 IKTEKTNIAQKEKLEEQNALRLKKENDDRDIEISTLKQDLELAK-RTHELHCLQLEEQIYETKIESQKKLQELERLLTVS 397 (1073)
Q Consensus 319 l~~e~~k~eek~~~~e~~~~~l~ke~e~~~~e~~~Lk~ele~~k-~~~e~~~~~le~~~~~~k~ele~~l~e~e~~l~~~ 397 (1073)
|+.+...+.++....+..+..|..-.++.+.+...++...+.-- -.+.+ ...-..+. +.-++++.+++.+.+.+
T Consensus 187 L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~ae----v~lim~eL-e~aq~ri~~lE~e~e~L 261 (629)
T KOG0963|consen 187 LKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAE----VSLIMTEL-EDAQQRIVFLEREVEQL 261 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHH----HHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 56666677777777777777766666666555555544421100 00000 00000000 12244555566666666
Q ss_pred HHHHHHHHHhh-hhhhHHHHHHHHhHHhHHHhhHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHhhhhhHHHHHHHHHHHH
Q 001464 398 KKKVEELESLS-ESKSQRWKRIEHSYQSFMGCQLGVIQDLRVAFESTKHEVLETKKNYSKEFDCLGLNLKRLIDAAEKYH 476 (1073)
Q Consensus 398 ~~~v~~le~~~-~~~~~~~~~~~~~~~~~l~~Q~~~l~el~~~~~~~k~ei~~~~~~~~~e~~~l~~~~~~l~~~~~~y~ 476 (1073)
+.++....+-. ..+.... ...-..+.+=.+.|+.|-..++.++.-+.+....+..+++.|..+++......+...
T Consensus 262 ~~ql~~~N~~~~~~~~~~i----~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~ 337 (629)
T KOG0963|consen 262 REQLAKANSSKKLAKIDDI----DALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHKAQISALEKELKAKISELEELK 337 (629)
T ss_pred HHHHHhhhhhhhhccCCch----HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65554432211 1111111 111122222234466666666666666666666666666666666666655555554
Q ss_pred HHHHHhhhhhhhh
Q 001464 477 VILAENRRLYNEV 489 (1073)
Q Consensus 477 ~~l~erRkL~N~v 489 (1073)
..+.. |..|++|
T Consensus 338 ~kL~~-~sDYeeI 349 (629)
T KOG0963|consen 338 EKLNS-RSDYEEI 349 (629)
T ss_pred HHHhh-hccHHHH
Confidence 44433 3455544
No 102
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=93.98 E-value=2.5 Score=54.01 Aligned_cols=96 Identities=22% Similarity=0.294 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001464 311 VVANQLERIKTEKTNIAQKEKLEEQNALRLKKENDDRDIEISTLKQDLELAKRTHELHCLQLEEQIYETKIESQKKLQEL 390 (1073)
Q Consensus 311 ~~~~~l~~l~~e~~k~eek~~~~e~~~~~l~ke~e~~~~e~~~Lk~ele~~k~~~e~~~~~le~~~~~~k~ele~~l~e~ 390 (1073)
.+..+++.++.++.+++.......+++..++......+..+..|+.+|+.+++.-..-..+++.. +.....++-++.++
T Consensus 593 el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~-~e~~e~le~~~~~~ 671 (769)
T PF05911_consen 593 ELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAM-KESYESLETRLKDL 671 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhhHH
Confidence 34455666666666665555445555555666666666677788888887776655544444443 34455667777777
Q ss_pred HHHHHHHHHHHHHHHHh
Q 001464 391 ERLLTVSKKKVEELESL 407 (1073)
Q Consensus 391 e~~l~~~~~~v~~le~~ 407 (1073)
+.++..+..++..|+.-
T Consensus 672 e~E~~~l~~Ki~~Le~E 688 (769)
T PF05911_consen 672 EAEAEELQSKISSLEEE 688 (769)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77777777777766543
No 103
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=93.97 E-value=9.2 Score=44.62 Aligned_cols=104 Identities=18% Similarity=0.208 Sum_probs=56.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H---HHHHHHHHHHHHHHHHHHH----HHHHhhhhh-----
Q 001464 347 RDIEISTLKQDLELAKRTHELHCLQLEEQIYETKIE---S---QKKLQELERLLTVSKKKVE----ELESLSESK----- 411 (1073)
Q Consensus 347 ~~~e~~~Lk~ele~~k~~~e~~~~~le~~~~~~k~e---l---e~~l~e~e~~l~~~~~~v~----~le~~~~~~----- 411 (1073)
+..|+.+++.||+.+.+.|...|+++-.-+..++++ | ....+++....+++-+++. .|..+..+.
T Consensus 419 yleelqsvqRELeVLSEQYSQKCLEnahLaqalEaerqaLRqCQrEnQELnaHNQELnnRLaaEItrLRtlltgdGgGtG 498 (593)
T KOG4807|consen 419 YLEELQSVQRELEVLSEQYSQKCLENAHLAQALEAERQALRQCQRENQELNAHNQELNNRLAAEITRLRTLLTGDGGGTG 498 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHhccCCCCCC
Confidence 556888999999999999999998865544333221 1 2222333333333333322 232222110
Q ss_pred ---hHHHHHHHHhHHhHHHhhHHHHHHHHHHHHHhHHHHHHHHH
Q 001464 412 ---SQRWKRIEHSYQSFMGCQLGVIQDLRVAFESTKHEVLETKK 452 (1073)
Q Consensus 412 ---~~~~~~~~~~~~~~l~~Q~~~l~el~~~~~~~k~ei~~~~~ 452 (1073)
.+.-... .+.-+|..-...||-|+..+..+|.++..+++
T Consensus 499 splaqgkday--ELEVLLRVKEsEiQYLKqEissLkDELQtalr 540 (593)
T KOG4807|consen 499 SPLAQGKDAY--ELEVLLRVKESEIQYLKQEISSLKDELQTALR 540 (593)
T ss_pred CccccCcchh--hHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0000001 12223444455677888888888888877654
No 104
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=93.95 E-value=8.6 Score=49.37 Aligned_cols=60 Identities=20% Similarity=0.352 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhhHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCEEE
Q 001464 432 VIQDLRVAFESTKHEVLETKKNYSKEFDCLGLNLKRLIDAAEKYHVILAENRRLYNEVQDLKGNIRV 498 (1073)
Q Consensus 432 ~l~el~~~~~~~k~ei~~~~~~~~~e~~~l~~~~~~l~~~~~~y~~~l~erRkL~N~vqeLKGnIRV 498 (1073)
.+.+|...+..++.++-.+..... .-...|.+.-........+||+.-.++-+||.--.+
T Consensus 665 qleeL~~~l~k~~~Eld~l~~qL~-------ssq~~L~e~d~~L~~le~Errk~lEE~l~mKqeal~ 724 (775)
T PF10174_consen 665 QLEELEAALEKLRQELDQLKAQLE-------SSQQSLMERDQELNALEAERRKQLEEVLEMKQEALL 724 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 455666666655555544432111 111123333333444557889988999999954443
No 105
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=93.91 E-value=24 Score=44.49 Aligned_cols=50 Identities=22% Similarity=0.282 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001464 349 IEISTLKQDLELAKRTHELHCLQLEEQIYETKIESQKKLQELERLLTVSKK 399 (1073)
Q Consensus 349 ~e~~~Lk~ele~~k~~~e~~~~~le~~~~~~k~ele~~l~e~e~~l~~~~~ 399 (1073)
.|+..|+.+++.+...++.+...++. ......+.+.+|.+++..++.+..
T Consensus 87 ~E~~~L~kElE~L~~qlqaqv~~ne~-Ls~L~~EqEerL~ELE~~le~~~e 136 (617)
T PF15070_consen 87 AEAEHLRKELESLEEQLQAQVENNEQ-LSRLNQEQEERLAELEEELERLQE 136 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555544443332221 122223334444444444444333
No 106
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=93.82 E-value=10 Score=47.17 Aligned_cols=57 Identities=12% Similarity=0.173 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHH
Q 001464 310 QVVANQLERIKTEKTNIAQKEKLEEQNALRLKKENDDRDIEISTLKQDLELAKRTHE 366 (1073)
Q Consensus 310 ~~~~~~l~~l~~e~~k~eek~~~~e~~~~~l~ke~e~~~~e~~~Lk~ele~~k~~~e 366 (1073)
+.+..++++|-.-.++-...++.-+++..++.+-..+....+..|+.+++.+++.|.
T Consensus 285 ~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~ 341 (569)
T PRK04778 285 EEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYT 341 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 334444444433333334444555666777777777888888888888888888765
No 107
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=93.80 E-value=1.3 Score=44.28 Aligned_cols=61 Identities=20% Similarity=0.292 Sum_probs=41.5
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHhhhcccch---hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001464 315 QLERIKTEKTNIAQKEKLEEQNALRLKKENDDR---DIEISTLKQDLELAKRTHELHCLQLEEQ 375 (1073)
Q Consensus 315 ~l~~l~~e~~k~eek~~~~e~~~~~l~ke~e~~---~~e~~~Lk~ele~~k~~~e~~~~~le~~ 375 (1073)
++..++.+...++..+....+++.+|+.+.+.. ..++..|+.+++.+...|..-..-+-.+
T Consensus 31 E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK 94 (120)
T PF12325_consen 31 ELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEK 94 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 444455555566666677777888888888544 4567788888888888777755555443
No 108
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=93.74 E-value=23 Score=43.65 Aligned_cols=10 Identities=40% Similarity=0.687 Sum_probs=7.2
Q ss_pred hHHHHHHHHH
Q 001464 119 PVLQCLRSLR 128 (1073)
Q Consensus 119 ~Vv~cL~aL~ 128 (1073)
-|++|+-+|+
T Consensus 129 EV~~ilK~L~ 138 (581)
T KOG0995|consen 129 EVVQILKNLK 138 (581)
T ss_pred HHHHHHHhCC
Confidence 4788887775
No 109
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.70 E-value=23 Score=44.80 Aligned_cols=14 Identities=36% Similarity=0.444 Sum_probs=6.9
Q ss_pred HHHHhhhhhHHHHH
Q 001464 456 KEFDCLGLNLKRLI 469 (1073)
Q Consensus 456 ~e~~~l~~~~~~l~ 469 (1073)
.+++.+..++++|.
T Consensus 563 ~eidi~n~qlkelk 576 (1118)
T KOG1029|consen 563 NEIDIFNNQLKELK 576 (1118)
T ss_pred HhhhhHHHHHHHHH
Confidence 34444555555543
No 110
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=93.65 E-value=7.2 Score=41.65 Aligned_cols=53 Identities=11% Similarity=0.342 Sum_probs=32.8
Q ss_pred hhhhHHHHHHHHhHHhHHHhhHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHhh
Q 001464 409 ESKSQRWKRIEHSYQSFMGCQLGVIQDLRVAFESTKHEVLETKKNYSKEFDCL 461 (1073)
Q Consensus 409 ~~~~~~~~~~~~~~~~~l~~Q~~~l~el~~~~~~~k~ei~~~~~~~~~e~~~l 461 (1073)
..+...|...+..+..++......+-.|=..+..++.....++.....++..+
T Consensus 119 ~~ke~~~~~ee~~~~~y~~~eh~rll~LWr~v~~lRr~f~elr~~TerdL~~~ 171 (182)
T PF15035_consen 119 EQKEAEWREEEENFNQYLSSEHSRLLSLWREVVALRRQFAELRTATERDLSDM 171 (182)
T ss_pred HHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 34455677777777777777666666666666666666666555554444444
No 111
>PRK09039 hypothetical protein; Validated
Probab=93.64 E-value=5.5 Score=46.46 Aligned_cols=13 Identities=15% Similarity=0.342 Sum_probs=6.9
Q ss_pred HHHHHHHHHhHhh
Q 001464 232 LFNIVNRILDECV 244 (1073)
Q Consensus 232 l~~~~~~~l~~~~ 244 (1073)
+|+|+.-.|++-|
T Consensus 36 ~f~~~q~fLs~~i 48 (343)
T PRK09039 36 VFVVAQFFLSREI 48 (343)
T ss_pred HHHHHHHHHHHHH
Confidence 4455555565543
No 112
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=93.63 E-value=16 Score=41.55 Aligned_cols=31 Identities=19% Similarity=0.188 Sum_probs=17.3
Q ss_pred hhhhhHHHhhhhhHHHhhHHHHHHHHHHHhh
Q 001464 270 TATQYQNFKNQNNLFRAREEKYKSRIRVLET 300 (1073)
Q Consensus 270 is~q~~~~~~q~~~~~~~~~~~~~~~~~le~ 300 (1073)
+-.+.+.++...+-|+.+.+.-...+..++.
T Consensus 73 l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~ 103 (312)
T PF00038_consen 73 LELEIDNLKEELEDLRRKYEEELAERKDLEE 103 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666655444444443
No 113
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=93.51 E-value=6.6 Score=40.30 Aligned_cols=65 Identities=29% Similarity=0.363 Sum_probs=38.5
Q ss_pred HHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001464 338 LRLKKENDDRDIEISTLKQDLELAKRTHELHCLQLEEQIYETKIESQKKLQELERLLTVSKKKVEELESLSES 410 (1073)
Q Consensus 338 ~~l~ke~e~~~~e~~~Lk~ele~~k~~~e~~~~~le~~~~~~k~ele~~l~e~e~~l~~~~~~v~~le~~~~~ 410 (1073)
..+..+.+....++.+|+.+++.+...-.....+|.+- .....++...++..+.+|.+|+.....
T Consensus 41 e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l--------~sEk~~L~k~lq~~q~kv~eLE~~~~~ 105 (140)
T PF10473_consen 41 ECLILDAENSKAEIETLEEELEELTSELNQLELELDTL--------RSEKENLDKELQKKQEKVSELESLNSS 105 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 34445556667778888888877665544444443331 233445566667777777777765533
No 114
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=93.49 E-value=27 Score=43.77 Aligned_cols=69 Identities=16% Similarity=0.237 Sum_probs=41.6
Q ss_pred HHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHH
Q 001464 334 EQNALRLKKENDDRDIEISTLKQDLELAKRTHELHCLQLEEQIYETKI----------ESQKKLQELERLLTVSKKKVE 402 (1073)
Q Consensus 334 e~~~~~l~ke~e~~~~e~~~Lk~ele~~k~~~e~~~~~le~~~~~~k~----------ele~~l~e~e~~l~~~~~~v~ 402 (1073)
.....+++++.++...+...|+.+|+.++...+..-.+++.+..+... ..+++++-+++.+..++++|+
T Consensus 526 k~qee~~~kqie~Lee~~~~Lrneles~~eel~~k~~Ev~~kl~ksEen~r~~e~e~~~k~kq~k~lenk~~~LrKqvE 604 (786)
T PF05483_consen 526 KKQEEKMLKQIENLEETNTQLRNELESVKEELKQKGEEVKCKLDKSEENARSIECEILKKEKQMKILENKCNNLRKQVE 604 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 334457777777777778888888888887766666665554433211 223444445555555555444
No 115
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=93.47 E-value=29 Score=48.17 Aligned_cols=46 Identities=15% Similarity=0.240 Sum_probs=24.3
Q ss_pred HHHHHHHHHhHHHHHHHHHhhHHHHHhhhhhHHHHHHHHHHHHHHH
Q 001464 434 QDLRVAFESTKHEVLETKKNYSKEFDCLGLNLKRLIDAAEKYHVIL 479 (1073)
Q Consensus 434 ~el~~~~~~~k~ei~~~~~~~~~e~~~l~~~~~~l~~~~~~y~~~l 479 (1073)
..++..+......+...+..|..++-....-...|....+.|+...
T Consensus 1028 ~~~k~dl~~~~~~~~~a~~~Ye~el~~ha~~~q~l~kl~ee~~~~~ 1073 (1822)
T KOG4674|consen 1028 EDLQNDLKTETEQLRKAQSKYESELVQHADLTQKLIKLREEFAKCN 1073 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444555566777766555555555555555555443
No 116
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=93.43 E-value=7.4 Score=39.21 Aligned_cols=56 Identities=20% Similarity=0.339 Sum_probs=31.4
Q ss_pred HHHHHHHHHhHHHHHHHHHhhHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhc
Q 001464 434 QDLRVAFESTKHEVLETKKNYSKEFDCLGLNLKRLIDAAEKYHVILAENRRLYNEVQDL 492 (1073)
Q Consensus 434 ~el~~~~~~~k~ei~~~~~~~~~e~~~l~~~~~~l~~~~~~y~~~l~erRkL~N~vqeL 492 (1073)
.+|+....+.+..+......|.++=..|... +.+...++...-..|+-||++|+.+
T Consensus 76 ~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e---~~~~~~r~~dL~~QN~lLh~QlE~l 131 (132)
T PF07926_consen 76 NELKAEAESAKAELEESEASWEEQKEQLEKE---LSELEQRIEDLNEQNKLLHDQLESL 131 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444444455555555555555444333332 3344444555557899999999865
No 117
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=93.42 E-value=13 Score=43.04 Aligned_cols=28 Identities=29% Similarity=0.400 Sum_probs=14.3
Q ss_pred hhHHHHHHHHHHHhhhhccchhhHHHHH
Q 001464 286 AREEKYKSRIRVLETLTVGTTEENQVVA 313 (1073)
Q Consensus 286 ~~~~~~~~~~~~le~l~~~~~ee~~~~~ 313 (1073)
++..=|.=|.+.++.|..+-.+..+.+.
T Consensus 130 ak~~WYeWR~kllegLk~~L~~~~~~l~ 157 (312)
T smart00787 130 AKKMWYEWRMKLLEGLKEGLDENLEGLK 157 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455566666665555544444333
No 118
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=93.29 E-value=12 Score=46.42 Aligned_cols=18 Identities=17% Similarity=0.137 Sum_probs=13.2
Q ss_pred cChhhHHHHHHHHHHhcC
Q 001464 27 AEGNQLSTLVEWLNEMIP 44 (1073)
Q Consensus 27 ~~~~r~~e~~~Wie~vlg 44 (1073)
...++-.++-.|-..+..
T Consensus 26 ~~~~~i~~Le~~k~~l~~ 43 (569)
T PRK04778 26 RNYKRIDELEERKQELEN 43 (569)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 344566788889888887
No 119
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=93.04 E-value=18 Score=46.75 Aligned_cols=66 Identities=20% Similarity=0.250 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHhhHHHH---HhhhhhHHHHHH-HHHHHHHH--------HHHhh-hhhhhhhhccCCEEE
Q 001464 433 IQDLRVAFESTKHEVLETKKNYSKEF---DCLGLNLKRLID-AAEKYHVI--------LAENR-RLYNEVQDLKGNIRV 498 (1073)
Q Consensus 433 l~el~~~~~~~k~ei~~~~~~~~~e~---~~l~~~~~~l~~-~~~~y~~~--------l~erR-kL~N~vqeLKGnIRV 498 (1073)
+++++..+...+.++.++.-.|.... +.+...+..|.. +.+.|.+- ..+|- =++|++.++++.|.=
T Consensus 330 l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~eRDkwir~ei~~l~~~i~~ 408 (1200)
T KOG0964|consen 330 LQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSKEERDKWIRSEIEKLKRGIND 408 (1200)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHHHHHHHHHHHhh
Confidence 45666666666677766665554322 222233333322 11112110 12343 377888888877643
No 120
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=93.04 E-value=3.9 Score=45.71 Aligned_cols=26 Identities=35% Similarity=0.486 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhcc
Q 001464 468 LIDAAEKYHVILAENRRLYNEVQDLK 493 (1073)
Q Consensus 468 l~~~~~~y~~~l~erRkL~N~vqeLK 493 (1073)
+.+..++|.+++++|++|.-+|.-|.
T Consensus 164 ~e~L~ekynkeveerkrle~e~k~lq 189 (307)
T PF10481_consen 164 YEELQEKYNKEVEERKRLEAEVKALQ 189 (307)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHh
Confidence 45667899999999999999888776
No 121
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=93.01 E-value=0.13 Score=65.23 Aligned_cols=43 Identities=28% Similarity=0.530 Sum_probs=27.4
Q ss_pred hhHHHHHHHHHHhcCCCCCCCCccHHHHHHHchhhHHHHHHHhhhcCCCc
Q 001464 30 NQLSTLVEWLNEMIPHIHLPFEASEEKLRACLVDGTVLCLVLNKLSPDSV 79 (1073)
Q Consensus 30 ~r~~e~~~Wie~vlg~~~lp~~~s~edl~~~LrDGviLC~L~N~l~Pgsv 79 (1073)
..-.-++.||.. ++ ..-|. .+ ..-|.|||+|..++..|.|...
T Consensus 7 ~l~~~Lv~Wv~t-f~-~~~~~-~~----~~dL~DGv~L~evL~qIDp~~F 49 (713)
T PF05622_consen 7 ELCDSLVTWVQT-FN-LSAPC-SS----YEDLSDGVALAEVLHQIDPEYF 49 (713)
T ss_dssp HHHHHHHHHHTT-----SS----S----HHHHTTSHHHHHHHHHH-TTTS
T ss_pred hHHHHHHHHHHH-CC-CCCCc-CC----HHHccchHHHHHHHHHhCcccc
Confidence 445578999987 44 22222 22 3456799999999999999754
No 122
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=92.97 E-value=7.5 Score=42.09 Aligned_cols=97 Identities=23% Similarity=0.288 Sum_probs=66.1
Q ss_pred hcCCCCchHHHHHHHHHHHHHHHHhhhh---hHHHhhhhhHHHhhHHHHHHHHHHHhhhhccchhhHHHHHHHHHHHHHH
Q 001464 246 RKNGDAPHRVACLLRKVVPLIERRTATQ---YQNFKNQNNLFRAREEKYKSRIRVLETLTVGTTEENQVVANQLERIKTE 322 (1073)
Q Consensus 246 ~~~~~~~~~~~~~l~kvv~e~e~ris~q---~~~~~~q~~~~~~~~~~~~~~~~~le~l~~~~~ee~~~~~~~l~~l~~e 322 (1073)
-|+||| +||+--..|.-..++.. ...|++|+.-.++....-.+++.-|..-....+-|+++..++|++.+.|
T Consensus 7 qk~GEI-----sLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~E 81 (202)
T PF06818_consen 7 QKSGEI-----SLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNE 81 (202)
T ss_pred hhhhhH-----HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCH
Confidence 478888 46777777766666644 4567888888888877777777777776666777888888888886666
Q ss_pred hhhHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHH
Q 001464 323 KTNIAQKEKLEEQNALRLKKENDDRDIEISTLKQDLELA 361 (1073)
Q Consensus 323 ~~k~eek~~~~e~~~~~l~ke~e~~~~e~~~Lk~ele~~ 361 (1073)
.+-+.++.-. .+.|+..|++++..+
T Consensus 82 a~lLrekl~~--------------le~El~~Lr~~l~~~ 106 (202)
T PF06818_consen 82 AELLREKLGQ--------------LEAELAELREELACA 106 (202)
T ss_pred HHHhhhhhhh--------------hHHHHHHHHHHHHhh
Confidence 6555554332 334566666666554
No 123
>PRK04863 mukB cell division protein MukB; Provisional
Probab=92.92 E-value=53 Score=45.54 Aligned_cols=21 Identities=10% Similarity=0.371 Sum_probs=11.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 001464 836 DVRELMEQVGSLKDIITKKDE 856 (1073)
Q Consensus 836 ~v~eL~~qv~~Lk~~i~~~~e 856 (1073)
.+..|..++..++..|.+.+.
T Consensus 1212 t~e~Le~ei~rl~~~L~e~Er 1232 (1486)
T PRK04863 1212 AIEQMEIELSRLTEELTSREQ 1232 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555555556555555444
No 124
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=92.91 E-value=40 Score=44.04 Aligned_cols=13 Identities=46% Similarity=0.703 Sum_probs=7.6
Q ss_pred Hhhhhhhhhhhcc
Q 001464 481 ENRRLYNEVQDLK 493 (1073)
Q Consensus 481 erRkL~N~vqeLK 493 (1073)
||..|..+|+-|+
T Consensus 545 ENa~LlkqI~~Lk 557 (1195)
T KOG4643|consen 545 ENAHLLKQIQSLK 557 (1195)
T ss_pred HHHHHHHHHHHHH
Confidence 4555666666655
No 125
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=92.87 E-value=16 Score=39.44 Aligned_cols=97 Identities=16% Similarity=0.246 Sum_probs=48.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHhHH
Q 001464 347 RDIEISTLKQDLELAKRTHELHCLQLEEQIYETKIESQKKLQELERLLTVSKKKVEELESLSESKSQRWKRIEHSYQSFM 426 (1073)
Q Consensus 347 ~~~e~~~Lk~ele~~k~~~e~~~~~le~~~~~~k~ele~~l~e~e~~l~~~~~~v~~le~~~~~~~~~~~~~~~~~~~~l 426 (1073)
.+.|+..|++.|...+. ....+++++++.+.++......++.|..+.+.+.-.- ...++.-|
T Consensus 66 h~eEvr~Lr~~LR~~q~---------------~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~e---ReeL~~kL 127 (194)
T PF15619_consen 66 HNEEVRVLRERLRKSQE---------------QERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAE---REELQRKL 127 (194)
T ss_pred HHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchh---HHHHHHHH
Confidence 44566666666543332 2234566677777777777777777766654333110 11222223
Q ss_pred HhhHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHhh
Q 001464 427 GCQLGVIQDLRVAFESTKHEVLETKKNYSKEFDCL 461 (1073)
Q Consensus 427 ~~Q~~~l~el~~~~~~~k~ei~~~~~~~~~e~~~l 461 (1073)
+.-...+++-...+..+...+.-..+.|..++..-
T Consensus 128 ~~~~~~l~~~~~ki~~Lek~leL~~k~~~rql~~e 162 (194)
T PF15619_consen 128 SQLEQKLQEKEKKIQELEKQLELENKSFRRQLASE 162 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 32233334444444444445555555565555433
No 126
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=92.82 E-value=14 Score=39.72 Aligned_cols=93 Identities=13% Similarity=0.113 Sum_probs=42.2
Q ss_pred HHHHHHHhhhhhHHHhhhhhHHHhhHHHHHHHHHHHhhhhccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhh
Q 001464 263 VPLIERRTATQYQNFKNQNNLFRAREEKYKSRIRVLETLTVGTTEENQVVANQLERIKTEKTNIAQKEKLEEQNALRLKK 342 (1073)
Q Consensus 263 v~e~e~ris~q~~~~~~q~~~~~~~~~~~~~~~~~le~l~~~~~ee~~~~~~~l~~l~~e~~k~eek~~~~e~~~~~l~k 342 (1073)
++|..+++......|+.|.....-.-.. ++--.+|++.+...+..|..+..++-...+.+|.+--+|.+
T Consensus 34 ~ee~na~L~~e~~~L~~q~~s~Qqal~~-----------aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~ 102 (193)
T PF14662_consen 34 AEEGNAQLAEEITDLRKQLKSLQQALQK-----------AKALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVA 102 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666666666653333222222 22233455544444444444444444444444444444444
Q ss_pred cccchhHHHHHHHHHHHHHHHHHH
Q 001464 343 ENDDRDIEISTLKQDLELAKRTHE 366 (1073)
Q Consensus 343 e~e~~~~e~~~Lk~ele~~k~~~e 366 (1073)
+++..+.|+..|..+.+-+++.++
T Consensus 103 ~i~~Lqeen~kl~~e~~~lk~~~~ 126 (193)
T PF14662_consen 103 EIETLQEENGKLLAERDGLKKRSK 126 (193)
T ss_pred HHHHHHHHHhHHHHhhhhHHHHHH
Confidence 444444444444444444444333
No 127
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=92.68 E-value=14 Score=48.92 Aligned_cols=27 Identities=22% Similarity=0.302 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001464 378 ETKIESQKKLQELERLLTVSKKKVEEL 404 (1073)
Q Consensus 378 ~~k~ele~~l~e~e~~l~~~~~~v~~l 404 (1073)
..+.+++.+++.+.++++....+.+.+
T Consensus 667 ~~e~~~e~~lk~~q~~~eq~~~E~~~~ 693 (1317)
T KOG0612|consen 667 ALEIKLERKLKMLQNELEQENAEHHRL 693 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666665555444433
No 128
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=92.60 E-value=0.043 Score=59.49 Aligned_cols=50 Identities=24% Similarity=0.462 Sum_probs=33.5
Q ss_pred eeeeceeeCCCCChHHHHhchHHHHHHhhcCcceeEEeecccCCCCCeeeec
Q 001464 540 LFKFNKVFGPEASQEEVFLDTRPLIRSVLDGYNVCIFAYGQTGSGKTYTMSG 591 (1073)
Q Consensus 540 ~F~FD~VF~~~atQeeVf~~~~pLV~svLdGyN~~IfAYGQTGSGKTyTM~G 591 (1073)
.|+||.-+.. ..++..|..+..+.+.--..||. +|-||++|+||||-|.+
T Consensus 4 ~~tFdnfv~g-~~N~~a~~~~~~ia~~~~~~~~~-l~l~G~~G~GKTHLL~A 53 (219)
T PF00308_consen 4 KYTFDNFVVG-ESNELAYAAAKAIAENPGERYNP-LFLYGPSGLGKTHLLQA 53 (219)
T ss_dssp T-SCCCS--T-TTTHHHHHHHHHHHHSTTTSSSE-EEEEESTTSSHHHHHHH
T ss_pred CCccccCCcC-CcHHHHHHHHHHHHhcCCCCCCc-eEEECCCCCCHHHHHHH
Confidence 5999997653 44667776666665552233455 78899999999998765
No 129
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=92.58 E-value=26 Score=41.17 Aligned_cols=27 Identities=37% Similarity=0.695 Sum_probs=17.4
Q ss_pred HHHhhc-CcceeEEeecccCCCCCeeeecCC
Q 001464 564 IRSVLD-GYNVCIFAYGQTGSGKTYTMSGPC 593 (1073)
Q Consensus 564 V~svLd-GyN~~IfAYGQTGSGKTyTM~G~~ 593 (1073)
|.-++| --|.|+|+-| .|-+.+-.||.
T Consensus 384 i~~f~d~a~nr~vf~~~---e~~at~~~~ps 411 (499)
T COG4372 384 IPRFCDRATNRCVFATG---EGRATPRCGPS 411 (499)
T ss_pred hHHHHhhccceeeeccc---cccccCccCCC
Confidence 443343 3589999855 56777777764
No 130
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=92.36 E-value=21 Score=39.72 Aligned_cols=35 Identities=9% Similarity=0.025 Sum_probs=14.3
Q ss_pred cchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 001464 304 GTTEENQVVANQLERIKTEKTNIAQKEKLEEQNAL 338 (1073)
Q Consensus 304 ~~~ee~~~~~~~l~~l~~e~~k~eek~~~~e~~~~ 338 (1073)
...+++..+.+++..++......+.+..-.++.+.
T Consensus 28 ~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~ 62 (239)
T COG1579 28 EIRKALKKAKAELEALNKALEALEIELEDLENQVS 62 (239)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444443333333333333333
No 131
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=92.10 E-value=31 Score=44.40 Aligned_cols=22 Identities=23% Similarity=0.460 Sum_probs=11.3
Q ss_pred hhhHHHHHHHHHHHHHHhhhHH
Q 001464 306 TEENQVVANQLERIKTEKTNIA 327 (1073)
Q Consensus 306 ~ee~~~~~~~l~~l~~e~~k~e 327 (1073)
.+|.|.+.+++.++...++..+
T Consensus 385 ~~e~eqLr~elaql~a~r~q~e 406 (980)
T KOG0980|consen 385 REEQEQLRNELAQLLASRTQLE 406 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666665554444433
No 132
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=92.10 E-value=16 Score=39.55 Aligned_cols=11 Identities=27% Similarity=0.558 Sum_probs=4.2
Q ss_pred hHHHHHHHHHH
Q 001464 308 ENQVVANQLER 318 (1073)
Q Consensus 308 e~~~~~~~l~~ 318 (1073)
|+..+..-|.+
T Consensus 56 eN~~L~epL~~ 66 (201)
T PF13851_consen 56 ENKRLSEPLKK 66 (201)
T ss_pred HHHHHhHHHHH
Confidence 33333333333
No 133
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=92.09 E-value=38 Score=41.87 Aligned_cols=21 Identities=38% Similarity=0.393 Sum_probs=13.6
Q ss_pred ccchhHHHHHHHHHHHHHHHH
Q 001464 344 NDDRDIEISTLKQDLELAKRT 364 (1073)
Q Consensus 344 ~e~~~~e~~~Lk~ele~~k~~ 364 (1073)
.+....||..||+.|+.++-.
T Consensus 174 ve~L~~Ei~~lke~l~~~~~a 194 (522)
T PF05701_consen 174 VEELSKEIIALKESLESAKLA 194 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777777776543
No 134
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=92.08 E-value=0.29 Score=58.99 Aligned_cols=94 Identities=22% Similarity=0.255 Sum_probs=60.0
Q ss_pred eeeeceeeCCCCChHHHHhchHHHHHHhhcCcceeEEeecccCCCCCeeeecCCCCCCCccchh----HHHHHHHHHHHH
Q 001464 540 LFKFNKVFGPEASQEEVFLDTRPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPCISSTEDWGVN----YRALNDLFEISE 615 (1073)
Q Consensus 540 ~F~FD~VF~~~atQeeVf~~~~pLV~svLdGyN~~IfAYGQTGSGKTyTM~G~~~~~~~~~GIi----pRal~~LF~~~~ 615 (1073)
.|....-|.|.-.|-. .+..||+.+-.|.-.- .-.|.|||||||||---- .....|-++ --...+||...+
T Consensus 4 ~F~l~s~f~PaGDQP~---AI~~Lv~gi~~g~~~Q-tLLGvTGSGKTfT~AnVI-~~~~rPtLV~AhNKTLAaQLy~Efk 78 (663)
T COG0556 4 PFKLHSPFKPAGDQPE---AIAELVEGIENGLKHQ-TLLGVTGSGKTFTMANVI-AKVQRPTLVLAHNKTLAAQLYSEFK 78 (663)
T ss_pred ceEeccCCCCCCCcHH---HHHHHHHHHhcCceee-EEeeeccCCchhHHHHHH-HHhCCCeEEEecchhHHHHHHHHHH
Confidence 4777777888888854 2466777766665443 457999999999996410 000111111 124567777666
Q ss_pred hccCCceEEEEEEEEEEecceee
Q 001464 616 SRKNSILYEVGVQMVEIYNEQVR 638 (1073)
Q Consensus 616 ~~~~~~~~~V~vS~lEIYnE~V~ 638 (1073)
.--........|||+.-|.-.-|
T Consensus 79 ~fFP~NaVEYFVSYYDYYQPEAY 101 (663)
T COG0556 79 EFFPENAVEYFVSYYDYYQPEAY 101 (663)
T ss_pred HhCcCcceEEEeeeccccCcccc
Confidence 65566677889999999976533
No 135
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=91.87 E-value=43 Score=43.28 Aligned_cols=22 Identities=23% Similarity=0.454 Sum_probs=11.6
Q ss_pred hhhhhhhhccCCEEEEeecCCC
Q 001464 484 RLYNEVQDLKGNIRVYCRIRPF 505 (1073)
Q Consensus 484 kL~N~vqeLKGnIRV~~RVRP~ 505 (1073)
+|.++++-++.+-....|++++
T Consensus 532 kl~~ql~k~~~~~e~~~r~~~L 553 (775)
T PF10174_consen 532 KLEKQLEKLRANAELRDRIQQL 553 (775)
T ss_pred HHHHHHHHHHhCHhhcchHHHH
Confidence 4556665544444444455554
No 136
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=91.87 E-value=10 Score=38.96 Aligned_cols=20 Identities=30% Similarity=0.428 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001464 383 SQKKLQELERLLTVSKKKVE 402 (1073)
Q Consensus 383 le~~l~e~e~~l~~~~~~v~ 402 (1073)
|..+++-++.+|......++
T Consensus 78 l~rriq~LEeele~ae~~L~ 97 (143)
T PF12718_consen 78 LNRRIQLLEEELEEAEKKLK 97 (143)
T ss_pred HHhhHHHHHHHHHHHHHHHH
Confidence 34444444444444444443
No 137
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=91.64 E-value=55 Score=42.86 Aligned_cols=20 Identities=20% Similarity=-0.041 Sum_probs=12.6
Q ss_pred HHHHHchhhHHHHHHHhhhc
Q 001464 56 KLRACLVDGTVLCLVLNKLS 75 (1073)
Q Consensus 56 dl~~~LrDGviLC~L~N~l~ 75 (1073)
.......|+.=||.-...+.
T Consensus 480 ~~~~l~~~~~~lk~~~~~l~ 499 (1174)
T KOG0933|consen 480 RRAKLHEDIGRLKDELDRLL 499 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34456677777776666554
No 138
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.58 E-value=24 Score=43.03 Aligned_cols=31 Identities=48% Similarity=0.658 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhh
Q 001464 837 VRELMEQVGSLKDIITKKDEEIERLQ-VLKAN 867 (1073)
Q Consensus 837 v~eL~~qv~~Lk~~i~~~~eeie~Lq-~l~~~ 867 (1073)
...|++++-.||..+.-+.+.|..|+ .|+++
T Consensus 600 ~e~l~~~ilklksllstkreqi~tlrtvlkan 631 (772)
T KOG0999|consen 600 KEALMEQILKLKSLLSTKREQITTLRTVLKAN 631 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45577777777777777777777765 33433
No 139
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=91.56 E-value=32 Score=44.18 Aligned_cols=28 Identities=18% Similarity=0.284 Sum_probs=14.3
Q ss_pred hhhhHHHhhhhhHHHhhHHHHHHHHHHH
Q 001464 271 ATQYQNFKNQNNLFRAREEKYKSRIRVL 298 (1073)
Q Consensus 271 s~q~~~~~~q~~~~~~~~~~~~~~~~~l 298 (1073)
..|.+.++.+..--....+.|+....++
T Consensus 200 ~~ql~~l~~~l~~aE~~l~~fk~~~~l~ 227 (754)
T TIGR01005 200 APEIADLSKQSRDAEAEVAAYRAQSDLL 227 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 4444445555444555566666554443
No 140
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=91.36 E-value=40 Score=40.65 Aligned_cols=28 Identities=21% Similarity=0.094 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHhhhhhH
Q 001464 256 ACLLRKVVPLIERRTATQYQNFKNQNNL 283 (1073)
Q Consensus 256 ~~~l~kvv~e~e~ris~q~~~~~~q~~~ 283 (1073)
+.=|.--+.+|-+-|-++.+.+++||.-
T Consensus 255 e~Elk~~f~~~~~~i~~~i~~lk~~n~~ 282 (622)
T COG5185 255 EQELKLGFEKFVHIINTDIANLKTQNDN 282 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666788888888888754
No 141
>PRK01156 chromosome segregation protein; Provisional
Probab=91.35 E-value=59 Score=42.62 Aligned_cols=21 Identities=29% Similarity=0.339 Sum_probs=8.1
Q ss_pred HhhhcccchhHHHHHHHHHHH
Q 001464 339 RLKKENDDRDIEISTLKQDLE 359 (1073)
Q Consensus 339 ~l~ke~e~~~~e~~~Lk~ele 359 (1073)
.+..+.+....++..|+.+++
T Consensus 222 ~~~~el~~~~~~l~~l~~~l~ 242 (895)
T PRK01156 222 RLSIEYNNAMDDYNNLKSALN 242 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444443333
No 142
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=91.29 E-value=36 Score=40.07 Aligned_cols=31 Identities=23% Similarity=0.282 Sum_probs=13.8
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhhhhhcc
Q 001464 463 LNLKRLIDAAEKYHVILAENRRLYNEVQDLK 493 (1073)
Q Consensus 463 ~~~~~l~~~~~~y~~~l~erRkL~N~vqeLK 493 (1073)
.++++|..+.+..+.+.++=.++|-..++++
T Consensus 259 ~~lq~lEt~q~~leqeva~le~yyQ~y~~lr 289 (499)
T COG4372 259 RQLQRLETAQARLEQEVAQLEAYYQAYVRLR 289 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444443
No 143
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=90.96 E-value=43 Score=40.36 Aligned_cols=22 Identities=9% Similarity=0.051 Sum_probs=12.5
Q ss_pred cHHHHHHHchhhHHHHHHHhhh
Q 001464 53 SEEKLRACLVDGTVLCLVLNKL 74 (1073)
Q Consensus 53 s~edl~~~LrDGviLC~L~N~l 74 (1073)
.+..++.+-.+||+=.-+-|.+
T Consensus 101 rdk~yqq~c~~~I~~yL~engf 122 (622)
T COG5185 101 RDKNYQQACQEEIYDYLKENGF 122 (622)
T ss_pred ccchHHHHHHHHHHHHHHHcCC
Confidence 3445666666666655555554
No 144
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=90.96 E-value=27 Score=38.05 Aligned_cols=18 Identities=28% Similarity=0.361 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001464 380 KIESQKKLQELERLLTVS 397 (1073)
Q Consensus 380 k~ele~~l~e~e~~l~~~ 397 (1073)
+...+.+|++++.++...
T Consensus 80 k~~qe~eI~~Le~e~~~~ 97 (206)
T PF14988_consen 80 KEQQEREIQTLEEELEKM 97 (206)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444455555555444443
No 145
>PLN03188 kinesin-12 family protein; Provisional
Probab=90.77 E-value=20 Score=47.82 Aligned_cols=76 Identities=22% Similarity=0.227 Sum_probs=49.5
Q ss_pred HHHHHHhhhhccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhccc-------chhHHHHHHHHHHHHHHHHH
Q 001464 293 SRIRVLETLTVGTTEENQVVANQLERIKTEKTNIAQKEKLEEQNALRLKKEND-------DRDIEISTLKQDLELAKRTH 365 (1073)
Q Consensus 293 ~~~~~le~l~~~~~ee~~~~~~~l~~l~~e~~k~eek~~~~e~~~~~l~ke~e-------~~~~e~~~Lk~ele~~k~~~ 365 (1073)
.|-..||.+....-.+++.+..-++|-|.|++------..-|+.+.||+.-++ -.+.|..+|-.+-..+|++|
T Consensus 877 ~re~~le~~c~~qa~~i~ql~~lv~qyk~e~~~~~~~~~~~~~ki~~l~~~~dg~l~~~~~~~~~~~~~~~~~~~~~~~y 956 (1320)
T PLN03188 877 RREMALEEFCTKQASEITQLNRLVQQYKHERECNAIIGQTREDKIIRLESLMDGVLSKEDFLEEELASLMHEHKLLKEKY 956 (1320)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhHHHhhhhhhhHHHHhhhcccccchhhhhhhhhhhhhhhHHHHHHHh
Confidence 34556666666666677777766777676665221112245666777777663 34677888888888888888
Q ss_pred HHH
Q 001464 366 ELH 368 (1073)
Q Consensus 366 e~~ 368 (1073)
+.|
T Consensus 957 ~~~ 959 (1320)
T PLN03188 957 ENH 959 (1320)
T ss_pred hcC
Confidence 876
No 146
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=90.72 E-value=37 Score=39.12 Aligned_cols=115 Identities=19% Similarity=0.319 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHhHHHhhHH
Q 001464 352 STLKQDLELAKRTHELHCLQLEEQIYETKIESQKKLQELERLLTVSKKKVEELESLSESKSQRWKRIEHSYQSFMGCQLG 431 (1073)
Q Consensus 352 ~~Lk~ele~~k~~~e~~~~~le~~~~~~k~ele~~l~e~e~~l~~~~~~v~~le~~~~~~~~~~~~~~~~~~~~l~~Q~~ 431 (1073)
-.||+++..--..|++....|... .+-.-.++.+++.+.+.++.+|.-.-.|.+.|..-.... |
T Consensus 218 ~qlK~ql~lY~aKyeefq~tl~KS--------NE~F~~fK~E~ekmtKk~kklEKE~l~wr~K~e~aNk~v---L----- 281 (391)
T KOG1850|consen 218 GQLKEQLALYMAKYEEFQTTLAKS--------NELFTKFKQEMEKMTKKIKKLEKETLIWRTKWENANKAV---L----- 281 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH---H-----
Confidence 356677665555566655554332 334556777888888888888877777887775432211 1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhhHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCEEEE
Q 001464 432 VIQDLRVAFESTKHEVLETKKNYSKEFDCLGLNLKRLIDAAEKYHVILAENRRLYNEVQDLKGNIRVY 499 (1073)
Q Consensus 432 ~l~el~~~~~~~k~ei~~~~~~~~~e~~~l~~~~~~l~~~~~~y~~~l~erRkL~N~vqeLKGnIRV~ 499 (1073)
++......|.+++..+..+++.|...+ .....+|..|+..+++++++|.+-
T Consensus 282 --------------~la~ekt~~~k~~~~lq~kiq~LekLc---RALq~ernel~~~~~~~e~~v~~k 332 (391)
T KOG1850|consen 282 --------------QLAEEKTVRDKEYETLQKKIQRLEKLC---RALQTERNELNKKLEDLEAQVSAK 332 (391)
T ss_pred --------------HHHHHhHHHHHHHHHHHHHHHHHHHHH---HHHHhccccHHHHHHHHhcccchh
Confidence 122223334455555666666554433 333457888999999999998873
No 147
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=90.44 E-value=32 Score=38.00 Aligned_cols=27 Identities=26% Similarity=0.394 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001464 382 ESQKKLQELERLLTVSKKKVEELESLS 408 (1073)
Q Consensus 382 ele~~l~e~e~~l~~~~~~v~~le~~~ 408 (1073)
.++.++.+++..|....+.++.|+...
T Consensus 138 ~~E~ki~eLE~el~~~~~~lk~lE~~~ 164 (237)
T PF00261_consen 138 AAESKIKELEEELKSVGNNLKSLEASE 164 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhchhHHHHHHHHHHHHHHHHHhhhhh
Confidence 456777777777777777777766544
No 148
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=90.22 E-value=11 Score=44.03 Aligned_cols=20 Identities=10% Similarity=0.275 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHhHHHHHHH
Q 001464 431 GVIQDLRVAFESTKHEVLET 450 (1073)
Q Consensus 431 ~~l~el~~~~~~~k~ei~~~ 450 (1073)
..+.+++..+..++..+..+
T Consensus 253 ~~l~~~~~~l~~~~~~l~~~ 272 (423)
T TIGR01843 253 ARLAELRERLNKARDRLQRL 272 (423)
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 34555566666666666553
No 149
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.13 E-value=26 Score=39.55 Aligned_cols=67 Identities=16% Similarity=0.191 Sum_probs=44.7
Q ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001464 308 ENQVVANQLERIKTEKTNIAQKEKLEEQNALRLKKENDDRDIEISTLKQDLELAKRTHELHCLQLEE 374 (1073)
Q Consensus 308 e~~~~~~~l~~l~~e~~k~eek~~~~e~~~~~l~ke~e~~~~e~~~Lk~ele~~k~~~e~~~~~le~ 374 (1073)
+...+.++++.|...-+.+..+.....+++.++..++...+.+|..+++.+..-+..++++.+-|..
T Consensus 46 ~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq~ 112 (265)
T COG3883 46 EKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQV 112 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666666666677777777777777777777777776666666666555544
No 150
>PRK06893 DNA replication initiation factor; Validated
Probab=89.99 E-value=0.17 Score=55.09 Aligned_cols=48 Identities=13% Similarity=0.213 Sum_probs=33.2
Q ss_pred eeeeeceeeCCCCChHHHHhchHHHHHHhhcCcceeEEeecccCCCCCeeeec
Q 001464 539 RLFKFNKVFGPEASQEEVFLDTRPLIRSVLDGYNVCIFAYGQTGSGKTYTMSG 591 (1073)
Q Consensus 539 k~F~FD~VF~~~atQeeVf~~~~pLV~svLdGyN~~IfAYGQTGSGKTyTM~G 591 (1073)
..++||..++.... .-+ ..+.+.+-.++|.+++-||++|+||||.+.+
T Consensus 11 ~~~~fd~f~~~~~~-~~~----~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a 58 (229)
T PRK06893 11 DDETLDNFYADNNL-LLL----DSLRKNFIDLQQPFFYIWGGKSSGKSHLLKA 58 (229)
T ss_pred CcccccccccCChH-HHH----HHHHHHhhccCCCeEEEECCCCCCHHHHHHH
Confidence 35889999965532 211 2222333457888899999999999999875
No 151
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=89.93 E-value=65 Score=40.73 Aligned_cols=65 Identities=22% Similarity=0.208 Sum_probs=42.0
Q ss_pred HHHhhHHHHHHHHHHHHHhHHHHHHH------HHhhHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhh
Q 001464 425 FMGCQLGVIQDLRVAFESTKHEVLET------KKNYSKEFDCLGLNLKRLIDAAEKYHVILAENRRLYNEV 489 (1073)
Q Consensus 425 ~l~~Q~~~l~el~~~~~~~k~ei~~~------~~~~~~e~~~l~~~~~~l~~~~~~y~~~l~erRkL~N~v 489 (1073)
.++.|...+.++..+..+.+.++... -..+.+|.+.|..++..+....+.|-....++-.|-..+
T Consensus 245 ~~~dqlqel~~l~~a~~q~~ee~~~~re~~~tv~~LqeE~e~Lqskl~~~~~l~~~~~~LELeN~~l~tkL 315 (716)
T KOG4593|consen 245 NMKDQLQELEELERALSQLREELATLRENRETVGLLQEELEGLQSKLGRLEKLQSTLLGLELENEDLLTKL 315 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34456666777778888887777643 234677888888888877776666655444554444443
No 152
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=89.87 E-value=78 Score=41.59 Aligned_cols=17 Identities=18% Similarity=0.198 Sum_probs=9.4
Q ss_pred cCCCCCCcccccccCCC
Q 001464 967 LGFGDEVSEERLSDISD 983 (1073)
Q Consensus 967 ~~~~~~~~~~~~~~~~~ 983 (1073)
+.|.+.+.=.+|..=+-
T Consensus 946 VkFR~s~~L~~L~sh~Q 962 (1072)
T KOG0979|consen 946 VKFRDSEGLKVLDSHRQ 962 (1072)
T ss_pred EEEccCccccccccccc
Confidence 34666666666654433
No 153
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=89.78 E-value=0.16 Score=62.80 Aligned_cols=51 Identities=20% Similarity=0.358 Sum_probs=37.4
Q ss_pred eeeeeceeeCCCCChHHHHhchHHHHHHhhcCcceeEEeecccCCCCCeeeec
Q 001464 539 RLFKFNKVFGPEASQEEVFLDTRPLIRSVLDGYNVCIFAYGQTGSGKTYTMSG 591 (1073)
Q Consensus 539 k~F~FD~VF~~~atQeeVf~~~~pLV~svLdGyN~~IfAYGQTGSGKTyTM~G 591 (1073)
..|+||..+-... +..+|..+..+++..-.+||. ||-||.+|+||||-+..
T Consensus 283 ~~~TFDnFvvG~s-N~~A~aaa~avae~~~~~~Np-L~LyG~sGsGKTHLL~A 333 (617)
T PRK14086 283 PKYTFDTFVIGAS-NRFAHAAAVAVAEAPAKAYNP-LFIYGESGLGKTHLLHA 333 (617)
T ss_pred CCCCHhhhcCCCc-cHHHHHHHHHHHhCccccCCc-EEEECCCCCCHHHHHHH
Confidence 4699998664443 445666666666654457786 89999999999999875
No 154
>PRK06620 hypothetical protein; Validated
Probab=89.55 E-value=0.13 Score=55.78 Aligned_cols=50 Identities=16% Similarity=0.226 Sum_probs=34.9
Q ss_pred eeeeeceeeCCCCChHHHHhchHHHHHHhhcCcc---eeEEeecccCCCCCeeeec
Q 001464 539 RLFKFNKVFGPEASQEEVFLDTRPLIRSVLDGYN---VCIFAYGQTGSGKTYTMSG 591 (1073)
Q Consensus 539 k~F~FD~VF~~~atQeeVf~~~~pLV~svLdGyN---~~IfAYGQTGSGKTyTM~G 591 (1073)
..|+||..+-..++ ...|..++.+.+. -|+| -.++-||++||||||.+..
T Consensus 11 ~~~tfd~Fvvg~~N-~~a~~~~~~~~~~--~~~~~~~~~l~l~Gp~G~GKThLl~a 63 (214)
T PRK06620 11 SKYHPDEFIVSSSN-DQAYNIIKNWQCG--FGVNPYKFTLLIKGPSSSGKTYLTKI 63 (214)
T ss_pred CCCCchhhEecccH-HHHHHHHHHHHHc--cccCCCcceEEEECCCCCCHHHHHHH
Confidence 35899997765444 5577766555432 1444 3589999999999999864
No 155
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=89.39 E-value=21 Score=44.14 Aligned_cols=57 Identities=16% Similarity=0.112 Sum_probs=34.1
Q ss_pred HHHHHHHHhhhhhHHHhhhhhHHHhhHHHHHHHHHHHhhhhccchhhHHHHHHHHHH
Q 001464 262 VVPLIERRTATQYQNFKNQNNLFRAREEKYKSRIRVLETLTVGTTEENQVVANQLER 318 (1073)
Q Consensus 262 vv~e~e~ris~q~~~~~~q~~~~~~~~~~~~~~~~~le~l~~~~~ee~~~~~~~l~~ 318 (1073)
+.||==+|+..--|.|.-|-.+.--+-+--..+|+-||++--++++.+...+..|++
T Consensus 108 ~yQerLaRLe~dkesL~LQvsvLteqVeaQgEKIrDLE~cie~kr~kLnatEEmLQq 164 (861)
T KOG1899|consen 108 EYQERLARLEMDKESLQLQVSVLTEQVEAQGEKIRDLETCIEEKRNKLNATEEMLQQ 164 (861)
T ss_pred HHHHHHHHHhcchhhheehHHHHHHHHHHhhhhHHHHHHHHHHHHhhhchHHHHHHH
Confidence 344444555555555555544444444444556888998887777776666666655
No 156
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=89.28 E-value=57 Score=39.19 Aligned_cols=50 Identities=16% Similarity=0.271 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhcccchhHHHHHHHHH
Q 001464 308 ENQVVANQLERIKTEKTNIAQKEKLEEQNALRLKKENDDRDIEISTLKQD 357 (1073)
Q Consensus 308 e~~~~~~~l~~l~~e~~k~eek~~~~e~~~~~l~ke~e~~~~e~~~Lk~e 357 (1073)
+.+.++.+|++++.+...++....--+.+..++.+..++.+..+..|..+
T Consensus 60 ~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q 109 (420)
T COG4942 60 QRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQ 109 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHH
Confidence 44455555555555555555554444444555555544444444444433
No 157
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=89.01 E-value=9.2 Score=43.95 Aligned_cols=68 Identities=40% Similarity=0.469 Sum_probs=46.5
Q ss_pred HHHHHHHHHHH------hhhhhHHHhhhhhHHHhhH--HHHHHHHHHHhhhhccchhhHHHHHHHHHHHHHHhhhHHH
Q 001464 259 LRKVVPLIERR------TATQYQNFKNQNNLFRARE--EKYKSRIRVLETLTVGTTEENQVVANQLERIKTEKTNIAQ 328 (1073)
Q Consensus 259 l~kvv~e~e~r------is~q~~~~~~q~~~~~~~~--~~~~~~~~~le~l~~~~~ee~~~~~~~l~~l~~e~~k~ee 328 (1073)
||++-+-+|.| +-+|.+.|++| |+.+++ -+...++.-||.+.....||++.+.-+|+.+..|.-+.+|
T Consensus 87 lr~i~es~~e~q~e~~qL~~qnqkL~nq--L~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekee 162 (401)
T PF06785_consen 87 LRKIRESVEERQQESEQLQSQNQKLKNQ--LFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEE 162 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHH--HHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHH
Confidence 45554445444 77788888877 455544 3446678889999999999999888888887655443333
No 158
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=88.73 E-value=87 Score=40.60 Aligned_cols=9 Identities=56% Similarity=0.656 Sum_probs=4.7
Q ss_pred HHHHHHHHH
Q 001464 758 ALGDVIFAL 766 (1073)
Q Consensus 758 aLg~VI~aL 766 (1073)
+|-.||.+|
T Consensus 795 ~lm~aI~~L 803 (980)
T KOG0980|consen 795 ALMEAIMAL 803 (980)
T ss_pred HHHHHHHHH
Confidence 445555555
No 159
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=88.61 E-value=65 Score=39.39 Aligned_cols=41 Identities=15% Similarity=0.247 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHhhHHHHHhhhhhHHHHHHHHH
Q 001464 433 IQDLRVAFESTKHEVLETKKNYSKEFDCLGLNLKRLIDAAE 473 (1073)
Q Consensus 433 l~el~~~~~~~k~ei~~~~~~~~~e~~~l~~~~~~l~~~~~ 473 (1073)
++=++..++..+..|.+....-.++...|..+++.|.+...
T Consensus 142 l~Pl~e~l~~f~~~v~~~~~~~~~~~~~L~~qi~~L~~~n~ 182 (475)
T PRK10361 142 LSPLREQLDGFRRQVQDSFGKEAQERHTLAHEIRNLQQLNA 182 (475)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555556666655554444455556666666655443
No 160
>PRK12377 putative replication protein; Provisional
Probab=88.61 E-value=0.25 Score=54.84 Aligned_cols=50 Identities=14% Similarity=0.250 Sum_probs=38.0
Q ss_pred eeeceeeCCCCChHHHHhchHHHHHHhhcCcceeEEeecccCCCCCeeeec
Q 001464 541 FKFNKVFGPEASQEEVFLDTRPLIRSVLDGYNVCIFAYGQTGSGKTYTMSG 591 (1073)
Q Consensus 541 F~FD~VF~~~atQeeVf~~~~pLV~svLdGyN~~IfAYGQTGSGKTyTM~G 591 (1073)
.+||........|..++..+..+++.+..+. ..++-||++|+||||.+.+
T Consensus 71 ~tFdnf~~~~~~~~~a~~~a~~~a~~~~~~~-~~l~l~G~~GtGKThLa~A 120 (248)
T PRK12377 71 CSFANYQVQNDGQRYALSQAKSIADELMTGC-TNFVFSGKPGTGKNHLAAA 120 (248)
T ss_pred CCcCCcccCChhHHHHHHHHHHHHHHHHhcC-CeEEEECCCCCCHHHHHHH
Confidence 3566554445667778888888888877654 4688999999999999875
No 161
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.56 E-value=77 Score=40.73 Aligned_cols=18 Identities=44% Similarity=0.399 Sum_probs=8.4
Q ss_pred chhHHHHHHHHHHHHHHH
Q 001464 346 DRDIEISTLKQDLELAKR 363 (1073)
Q Consensus 346 ~~~~e~~~Lk~ele~~k~ 363 (1073)
+...+.+.|+.++..+|-
T Consensus 696 ~~~s~hsql~~q~~~Lk~ 713 (970)
T KOG0946|consen 696 DFISEHSQLKDQLDLLKN 713 (970)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444455555555443
No 162
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=88.45 E-value=38 Score=43.31 Aligned_cols=26 Identities=38% Similarity=0.549 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001464 837 VRELMEQVGSLKDIITKKDEEIERLQ 862 (1073)
Q Consensus 837 v~eL~~qv~~Lk~~i~~~~eeie~Lq 862 (1073)
+..|++||-.||..+.-+.++|..|+
T Consensus 585 ~e~l~eqilKLKSLLSTKREQIaTLR 610 (717)
T PF09730_consen 585 KEELQEQILKLKSLLSTKREQIATLR 610 (717)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444
No 163
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=88.23 E-value=16 Score=46.82 Aligned_cols=7 Identities=43% Similarity=0.648 Sum_probs=4.0
Q ss_pred Ccccccc
Q 001464 107 FELSDLE 113 (1073)
Q Consensus 107 Fe~~DLE 113 (1073)
||++|||
T Consensus 342 ~E~VeLe 348 (717)
T PF10168_consen 342 LETVELE 348 (717)
T ss_pred EEEEeec
Confidence 5555554
No 164
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=88.23 E-value=34 Score=37.58 Aligned_cols=40 Identities=25% Similarity=0.303 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001464 328 QKEKLEEQNALRLKKENDDRDIEISTLKQDLELAKRTHELHCLQLEE 374 (1073)
Q Consensus 328 ek~~~~e~~~~~l~ke~e~~~~e~~~Lk~ele~~k~~~e~~~~~le~ 374 (1073)
.+++..+.++.++.+. .......|+.+|+.|+..|.+++.
T Consensus 100 ~~rK~~~~~~~k~~k~-------~~~~~~~l~KaK~~Y~~~c~~~e~ 139 (236)
T cd07651 100 QKRKKIQSHMEKLLKK-------KQDQEKYLEKAREKYEADCSKINS 139 (236)
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3344444445544444 334456778888889888888774
No 165
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=88.05 E-value=0.23 Score=56.30 Aligned_cols=31 Identities=32% Similarity=0.558 Sum_probs=27.3
Q ss_pred HHHHHHhhcCcceeEEeecccCCCCCeeeec
Q 001464 561 RPLIRSVLDGYNVCIFAYGQTGSGKTYTMSG 591 (1073)
Q Consensus 561 ~pLV~svLdGyN~~IfAYGQTGSGKTyTM~G 591 (1073)
-|++..+++--++.|+.-|+||||||+||--
T Consensus 114 P~i~~~~~~~~~GLILVTGpTGSGKSTTlAa 144 (353)
T COG2805 114 PPIVRELAESPRGLILVTGPTGSGKSTTLAA 144 (353)
T ss_pred CHHHHHHHhCCCceEEEeCCCCCcHHHHHHH
Confidence 5677888899999999999999999999853
No 166
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=87.76 E-value=74 Score=38.66 Aligned_cols=17 Identities=24% Similarity=0.264 Sum_probs=10.5
Q ss_pred hHHHHHHHHHhHhhhhc
Q 001464 231 SLFNIVNRILDECVERK 247 (1073)
Q Consensus 231 ~l~~~~~~~l~~~~~~~ 247 (1073)
---.++|.+.+.+++..
T Consensus 135 ~Aa~i~n~l~~~yi~~~ 151 (498)
T TIGR03007 135 LAKDVVQTLLTIFVEET 151 (498)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 33457777777766543
No 167
>PRK08084 DNA replication initiation factor; Provisional
Probab=87.69 E-value=0.28 Score=53.70 Aligned_cols=47 Identities=11% Similarity=0.285 Sum_probs=32.4
Q ss_pred eeeeceeeCCCCChHHHHhchHHHHHHhhcCcceeEEeecccCCCCCeeeec
Q 001464 540 LFKFNKVFGPEASQEEVFLDTRPLIRSVLDGYNVCIFAYGQTGSGKTYTMSG 591 (1073)
Q Consensus 540 ~F~FD~VF~~~atQeeVf~~~~pLV~svLdGyN~~IfAYGQTGSGKTyTM~G 591 (1073)
.|+||..+.. .+...+..++.++. ......++-||++|+||||.+.+
T Consensus 18 ~~~fd~f~~~--~n~~a~~~l~~~~~---~~~~~~l~l~Gp~G~GKThLl~a 64 (235)
T PRK08084 18 DETFASFYPG--DNDSLLAALQNALR---QEHSGYIYLWSREGAGRSHLLHA 64 (235)
T ss_pred cCCccccccC--ccHHHHHHHHHHHh---CCCCCeEEEECCCCCCHHHHHHH
Confidence 4788876654 55556665554433 22234789999999999999875
No 168
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=87.57 E-value=83 Score=39.02 Aligned_cols=39 Identities=8% Similarity=-0.043 Sum_probs=29.0
Q ss_pred CCchHHHHHHHHHHHHHHHHhhhhhHHHhhhhhHHHhhH
Q 001464 250 DAPHRVACLLRKVVPLIERRTATQYQNFKNQNNLFRARE 288 (1073)
Q Consensus 250 ~~~~~~~~~l~kvv~e~e~ris~q~~~~~~q~~~~~~~~ 288 (1073)
-||..|--=+.+-++++.|++..+.|++..+-+..++..
T Consensus 330 ~ikN~v~~n~e~~~e~~~r~~e~~kd~~~~~~~~~~~~~ 368 (607)
T KOG0240|consen 330 TIKNTVWVNLELTAEEWKRKLEKKKDKNVALKEELEKLR 368 (607)
T ss_pred cccchhhhhhHhhHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 466666556777789999999999999988766554433
No 169
>PRK07952 DNA replication protein DnaC; Validated
Probab=87.53 E-value=0.32 Score=53.90 Aligned_cols=50 Identities=14% Similarity=0.173 Sum_probs=36.3
Q ss_pred eeeceeeCCCCChHHHHhchHHHHHHhhcCcceeEEeecccCCCCCeeeec
Q 001464 541 FKFNKVFGPEASQEEVFLDTRPLIRSVLDGYNVCIFAYGQTGSGKTYTMSG 591 (1073)
Q Consensus 541 F~FD~VF~~~atQeeVf~~~~pLV~svLdGyN~~IfAYGQTGSGKTyTM~G 591 (1073)
.+||........|..++..+..+++....|++ .++-||.+|+||||.+.+
T Consensus 69 ~tFdnf~~~~~~q~~al~~a~~~~~~~~~~~~-~~~l~G~~GtGKThLa~a 118 (244)
T PRK07952 69 CSFENYRVECEGQMNALSKARQYVEEFDGNIA-SFIFSGKPGTGKNHLAAA 118 (244)
T ss_pred CccccccCCCchHHHHHHHHHHHHHhhccCCc-eEEEECCCCCCHHHHHHH
Confidence 45665444445677788777777777655543 689999999999999875
No 170
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=87.50 E-value=83 Score=38.95 Aligned_cols=32 Identities=16% Similarity=0.213 Sum_probs=17.6
Q ss_pred HhHHhHHHhhHHHHHHHHHHHHHhHHHHHHHH
Q 001464 420 HSYQSFMGCQLGVIQDLRVAFESTKHEVLETK 451 (1073)
Q Consensus 420 ~~~~~~l~~Q~~~l~el~~~~~~~k~ei~~~~ 451 (1073)
..++..+..+...|.+.+..+..++.++..++
T Consensus 277 ~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~ 308 (522)
T PF05701_consen 277 SELQSSLASAKKELEEAKKELEKAKEEASSLR 308 (522)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555556666666665655555444
No 171
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=87.46 E-value=19 Score=37.69 Aligned_cols=13 Identities=38% Similarity=0.514 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHH
Q 001464 254 RVACLLRKVVPLI 266 (1073)
Q Consensus 254 ~~~~~l~kvv~e~ 266 (1073)
.|..|+=|||.-+
T Consensus 23 ~v~~LmP~VV~vL 35 (158)
T PF09744_consen 23 AVKGLMPKVVRVL 35 (158)
T ss_pred HHHHHHHHHHHHH
Confidence 4556666665444
No 172
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=87.43 E-value=98 Score=39.70 Aligned_cols=14 Identities=29% Similarity=0.430 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHH
Q 001464 256 ACLLRKVVPLIERR 269 (1073)
Q Consensus 256 ~~~l~kvv~e~e~r 269 (1073)
+.++|.+|-++|-.
T Consensus 87 triyRrdv~llEdd 100 (1265)
T KOG0976|consen 87 TRIYRRDVNLLEDD 100 (1265)
T ss_pred HHHHHHHHHHhHHH
Confidence 45667777666654
No 173
>PRK08116 hypothetical protein; Validated
Probab=87.05 E-value=0.35 Score=54.25 Aligned_cols=51 Identities=22% Similarity=0.394 Sum_probs=38.0
Q ss_pred eeeeceeeCCCCChHHHHhchHHHHHHhhc--CcceeEEeecccCCCCCeeeec
Q 001464 540 LFKFNKVFGPEASQEEVFLDTRPLIRSVLD--GYNVCIFAYGQTGSGKTYTMSG 591 (1073)
Q Consensus 540 ~F~FD~VF~~~atQeeVf~~~~pLV~svLd--GyN~~IfAYGQTGSGKTyTM~G 591 (1073)
.++||... .+..+...|..+..+++.+.. ..|..++-||++|+||||.+..
T Consensus 81 ~~tFdnf~-~~~~~~~a~~~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~a 133 (268)
T PRK08116 81 NSTFENFL-FDKGSEKAYKIARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAAC 133 (268)
T ss_pred hcchhccc-CChHHHHHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHH
Confidence 45677644 456667778778888887654 3466799999999999999864
No 174
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=86.96 E-value=0.27 Score=59.20 Aligned_cols=32 Identities=31% Similarity=0.338 Sum_probs=28.0
Q ss_pred hHHHHHHhhcCcceeEEeecccCCCCCeeeec
Q 001464 560 TRPLIRSVLDGYNVCIFAYGQTGSGKTYTMSG 591 (1073)
Q Consensus 560 ~~pLV~svLdGyN~~IfAYGQTGSGKTyTM~G 591 (1073)
....+..++..-++-|+.-|+||||||.||+.
T Consensus 246 ~~~~~~~~~~~p~GliLvTGPTGSGKTTTLY~ 277 (500)
T COG2804 246 QLARLLRLLNRPQGLILVTGPTGSGKTTTLYA 277 (500)
T ss_pred HHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHH
Confidence 34567788889999999999999999999986
No 175
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=86.85 E-value=0.28 Score=58.80 Aligned_cols=50 Identities=20% Similarity=0.356 Sum_probs=35.8
Q ss_pred eeeeeceeeCCCCChHHHHhchHHHHHHhhcCcceeEEeecccCCCCCeeeec
Q 001464 539 RLFKFNKVFGPEASQEEVFLDTRPLIRSVLDGYNVCIFAYGQTGSGKTYTMSG 591 (1073)
Q Consensus 539 k~F~FD~VF~~~atQeeVf~~~~pLV~svLdGyN~~IfAYGQTGSGKTyTM~G 591 (1073)
..|+||.-+.. ..+...|..+..+... -..||. +|-||++|+||||.|..
T Consensus 100 ~~~tFdnFv~g-~~n~~a~~~~~~~~~~-~~~~n~-l~lyG~~G~GKTHLl~a 149 (440)
T PRK14088 100 PDYTFENFVVG-PGNSFAYHAALEVAKN-PGRYNP-LFIYGGVGLGKTHLLQS 149 (440)
T ss_pred CCCcccccccC-CchHHHHHHHHHHHhC-cCCCCe-EEEEcCCCCcHHHHHHH
Confidence 45899997743 4555667666555543 123675 99999999999999865
No 176
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=86.69 E-value=31 Score=39.98 Aligned_cols=48 Identities=21% Similarity=0.400 Sum_probs=22.2
Q ss_pred HHHHHHHHhhHHHHHhhhhhHHHHHHHHH----HHHHHHHHhhhhhhhhhhc
Q 001464 445 HEVLETKKNYSKEFDCLGLNLKRLIDAAE----KYHVILAENRRLYNEVQDL 492 (1073)
Q Consensus 445 ~ei~~~~~~~~~e~~~l~~~~~~l~~~~~----~y~~~l~erRkL~N~vqeL 492 (1073)
+|+....-.|..-..+|...+.-+...-+ ....++.|||-|+.+|..+
T Consensus 157 eEl~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~ 208 (319)
T PF09789_consen 157 EELVTERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERLKQL 208 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555443332211100 1234567888777655544
No 177
>PRK06835 DNA replication protein DnaC; Validated
Probab=86.62 E-value=0.28 Score=56.68 Aligned_cols=38 Identities=24% Similarity=0.430 Sum_probs=29.3
Q ss_pred hHHHHhchHHHHHHhhcCcceeEEeecccCCCCCeeeec
Q 001464 553 QEEVFLDTRPLIRSVLDGYNVCIFAYGQTGSGKTYTMSG 591 (1073)
Q Consensus 553 QeeVf~~~~pLV~svLdGyN~~IfAYGQTGSGKTyTM~G 591 (1073)
...++..+...|+.+-.+. -.|+-||++|+||||.+.+
T Consensus 165 ~~~~~~~~~~f~~~f~~~~-~~Lll~G~~GtGKThLa~a 202 (329)
T PRK06835 165 MEKILEKCKNFIENFDKNN-ENLLFYGNTGTGKTFLSNC 202 (329)
T ss_pred HHHHHHHHHHHHHHHhccC-CcEEEECCCCCcHHHHHHH
Confidence 3456666677888876554 5699999999999998865
No 178
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=86.50 E-value=27 Score=40.82 Aligned_cols=7 Identities=29% Similarity=0.107 Sum_probs=3.4
Q ss_pred cCcceeE
Q 001464 569 DGYNVCI 575 (1073)
Q Consensus 569 dGyN~~I 575 (1073)
.|-.+.|
T Consensus 326 ~G~~v~v 332 (423)
T TIGR01843 326 VGQPAEI 332 (423)
T ss_pred CCCceEE
Confidence 4555544
No 179
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=86.49 E-value=42 Score=34.51 Aligned_cols=39 Identities=26% Similarity=0.453 Sum_probs=17.7
Q ss_pred HHHHhhhHHHHHHHHHHHHHHhhhcccchhHHHHHHHHH
Q 001464 319 IKTEKTNIAQKEKLEEQNALRLKKENDDRDIEISTLKQD 357 (1073)
Q Consensus 319 l~~e~~k~eek~~~~e~~~~~l~ke~e~~~~e~~~Lk~e 357 (1073)
|+.|+..|.++....+..+..|..+....+.||.+|...
T Consensus 5 lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K 43 (143)
T PF12718_consen 5 LKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKK 43 (143)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555544444444444444444444444444433
No 180
>PRK05642 DNA replication initiation factor; Validated
Probab=86.35 E-value=0.41 Score=52.47 Aligned_cols=49 Identities=14% Similarity=0.301 Sum_probs=29.8
Q ss_pred eeeeceeeCCCCChHHHHhchHHHHHHhhcCc-ceeEEeecccCCCCCeeeec
Q 001464 540 LFKFNKVFGPEASQEEVFLDTRPLIRSVLDGY-NVCIFAYGQTGSGKTYTMSG 591 (1073)
Q Consensus 540 ~F~FD~VF~~~atQeeVf~~~~pLV~svLdGy-N~~IfAYGQTGSGKTyTM~G 591 (1073)
.|+||.-+... +..++..+..+.+.. .++ +-.++-||++|+||||-+..
T Consensus 15 ~~tfdnF~~~~--~~~a~~~~~~~~~~~-~~~~~~~l~l~G~~G~GKTHLl~a 64 (234)
T PRK05642 15 DATFANYYPGA--NAAALGYVERLCEAD-AGWTESLIYLWGKDGVGRSHLLQA 64 (234)
T ss_pred cccccccCcCC--hHHHHHHHHHHhhcc-ccCCCCeEEEECCCCCCHHHHHHH
Confidence 48899977432 333333333332211 122 34688999999999999765
No 181
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=86.34 E-value=1.6e+02 Score=40.91 Aligned_cols=10 Identities=20% Similarity=0.338 Sum_probs=4.6
Q ss_pred ccCcCchhhh
Q 001464 773 VPYRNSKLTQ 782 (1073)
Q Consensus 773 VPYRdSKLTr 782 (1073)
+||....|..
T Consensus 839 L~a~~~~l~~ 848 (1353)
T TIGR02680 839 LPTDPDALEA 848 (1353)
T ss_pred CCCChhHHHH
Confidence 4444444444
No 182
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=86.20 E-value=56 Score=40.75 Aligned_cols=62 Identities=26% Similarity=0.235 Sum_probs=35.3
Q ss_pred HHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001464 332 LEEQNALRLKKENDDRDIEISTLKQDLELAKRTHELHCLQLEEQIYETKIESQKKLQELERLLTVSK 398 (1073)
Q Consensus 332 ~~e~~~~~l~ke~e~~~~e~~~Lk~ele~~k~~~e~~~~~le~~~~~~k~ele~~l~e~e~~l~~~~ 398 (1073)
.-+++...+..-.++....+..|..+++.++..|.....+++.. ..++++++.+...+....
T Consensus 303 ~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~-----~~l~~~l~~l~~~~~~~~ 364 (560)
T PF06160_consen 303 YVEKNLKELYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIV-----RELEKQLKELEKRYEDLE 364 (560)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHH-----HHHHHHHHHHHHHHHHHH
Confidence 33444555555566677777788888888887776544443321 334444554444444333
No 183
>PRK10865 protein disaggregation chaperone; Provisional
Probab=86.10 E-value=23 Score=46.30 Aligned_cols=44 Identities=27% Similarity=0.349 Sum_probs=26.8
Q ss_pred eceeeCCCCChHHHHhchHHHHHHhhcCcc------eeEEeecccCCCCCeeee
Q 001464 543 FNKVFGPEASQEEVFLDTRPLIRSVLDGYN------VCIFAYGQTGSGKTYTMS 590 (1073)
Q Consensus 543 FD~VF~~~atQeeVf~~~~pLV~svLdGyN------~~IfAYGQTGSGKTyTM~ 590 (1073)
+.+|+|. ...-..+...|..+..|.. ++++-+|+||+|||++..
T Consensus 567 ~~~viGQ----~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~ 616 (857)
T PRK10865 567 HHRVIGQ----NEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCK 616 (857)
T ss_pred CCeEeCC----HHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHH
Confidence 4556653 3443444444444444432 578888999999999763
No 184
>KOG3000 consensus Microtubule-binding protein involved in cell cycle control [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=86.09 E-value=1.6 Score=49.63 Aligned_cols=103 Identities=17% Similarity=0.380 Sum_probs=77.9
Q ss_pred hhhHHHHHHHHHHhcCCCCCCCCccHHHHHHHchhhHHHHHHHhhhcCCCcc-CCCCCCCC-----cccHHHHHHHHHhC
Q 001464 29 GNQLSTLVEWLNEMIPHIHLPFEASEEKLRACLVDGTVLCLVLNKLSPDSVE-MGANFEPG-----PANVKRFLAAMDDM 102 (1073)
Q Consensus 29 ~~r~~e~~~Wie~vlg~~~lp~~~s~edl~~~LrDGviLC~L~N~l~Pgsv~-k~~~~~~~-----~eNI~~FL~ac~~~ 102 (1073)
.--|.|+..|+..++. .++. -.+-|.-|-.-|.++.-+.||.|+ +++.|... .-|-..+-.+-..+
T Consensus 14 ~~sR~E~laW~N~~l~-~n~~-------kIEe~~tGaaycqlmd~l~p~~i~lkkVkf~A~~Ehe~i~Nfk~lQ~~f~kl 85 (295)
T KOG3000|consen 14 NESRLEILAWINDLLQ-LNLT-------KIEELCTGAAYCQLMDMLFPPDIPLKKVKFAARLEHEYIPNFKVLQTCFNKL 85 (295)
T ss_pred ccchHHHHHHHHhhhh-cchh-------hhhhhcccchhhhhhhhccCCccccccccccccccchhhhhhHHHHHHHHhc
Confidence 3456799999999998 6652 345566999999999999999996 45555432 33777777777999
Q ss_pred CCCC-CccccccCCCchhHHHHHHHHHhhhhccCCCCc
Q 001464 103 GLPR-FELSDLEQGNMAPVLQCLRSLRASFSFCDEEDT 139 (1073)
Q Consensus 103 Gvp~-Fe~~DLE~~n~~~Vv~cL~aL~~~~~~k~~~~~ 139 (1073)
|+-. -...+|=++-+.-=+.-+..++.|+....+|..
T Consensus 86 gi~k~v~vdkLvKg~~qDNlEF~qWfkkffd~~~~g~~ 123 (295)
T KOG3000|consen 86 GIDKVVDVDKLVKGPFQDNLEFLQWFKKFFDANYGGKG 123 (295)
T ss_pred CCcccccHHHHhcccccchHHHHHHHHHHhhccCCccc
Confidence 9999 777777666666666678899999988866644
No 185
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=86.09 E-value=39 Score=34.81 Aligned_cols=20 Identities=35% Similarity=0.403 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001464 386 KLQELERLLTVSKKKVEELE 405 (1073)
Q Consensus 386 ~l~e~e~~l~~~~~~v~~le 405 (1073)
++.+|+....+..+.|+.++
T Consensus 95 kv~eLE~~~~~~~~~l~~~E 114 (140)
T PF10473_consen 95 KVSELESLNSSLENLLQEKE 114 (140)
T ss_pred HHHHHHHHhHHHHHHHHHHH
Confidence 34444444444444444433
No 186
>PRK09039 hypothetical protein; Validated
Probab=86.01 E-value=78 Score=37.13 Aligned_cols=18 Identities=6% Similarity=0.021 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 001464 254 RVACLLRKVVPLIERRTA 271 (1073)
Q Consensus 254 ~~~~~l~kvv~e~e~ris 271 (1073)
++-..|+..|..++..|.
T Consensus 39 ~~q~fLs~~i~~~~~eL~ 56 (343)
T PRK09039 39 VAQFFLSREISGKDSALD 56 (343)
T ss_pred HHHHHHHHHHhhHHHHHH
Confidence 345566666655555543
No 187
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=85.98 E-value=85 Score=40.32 Aligned_cols=24 Identities=17% Similarity=0.379 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001464 839 ELMEQVGSLKDIITKKDEEIERLQ 862 (1073)
Q Consensus 839 eL~~qv~~Lk~~i~~~~eeie~Lq 862 (1073)
++.-|+..|+..++..++|-..|.
T Consensus 672 EYvtQldemqrqL~aAEdEKKTLN 695 (717)
T PF09730_consen 672 EYVTQLDEMQRQLAAAEDEKKTLN 695 (717)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHH
Confidence 334445555555555555544443
No 188
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=85.92 E-value=0.36 Score=56.96 Aligned_cols=52 Identities=21% Similarity=0.330 Sum_probs=34.6
Q ss_pred ceeeeeceeeCCCCChHHHHhchHHHHHHhhcCcceeEEeecccCCCCCeeeec
Q 001464 538 HRLFKFNKVFGPEASQEEVFLDTRPLIRSVLDGYNVCIFAYGQTGSGKTYTMSG 591 (1073)
Q Consensus 538 ~k~F~FD~VF~~~atQeeVf~~~~pLV~svLdGyN~~IfAYGQTGSGKTyTM~G 591 (1073)
...|+||.... ...+...|..+..+...--..|| .++-||++|+||||.+..
T Consensus 104 ~~~~tfd~fi~-g~~n~~a~~~~~~~~~~~~~~~n-~l~l~G~~G~GKThL~~a 155 (405)
T TIGR00362 104 NPKYTFDNFVV-GKSNRLAHAAALAVAENPGKAYN-PLFIYGGVGLGKTHLLHA 155 (405)
T ss_pred CCCCccccccc-CCcHHHHHHHHHHHHhCcCccCC-eEEEECCCCCcHHHHHHH
Confidence 35689998443 34556677666666554212245 478899999999999864
No 189
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=85.91 E-value=98 Score=38.20 Aligned_cols=47 Identities=13% Similarity=0.172 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 001464 350 EISTLKQDLELAKRTHELHCLQL---EEQIYETKIESQKKLQELERLLTV 396 (1073)
Q Consensus 350 e~~~Lk~ele~~k~~~e~~~~~l---e~~~~~~k~ele~~l~e~e~~l~~ 396 (1073)
|+..|++|.+.++......+.++ ..+..+.+.++..+...++...+.
T Consensus 275 el~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~~~~~~~~~~~~~ 324 (511)
T PF09787_consen 275 ELEELKQERDHLQEEIQLLERQIEQLRAELQDLEAQLEGEQESFREQPQE 324 (511)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 45666666666665443333333 333344444444433333333333
No 190
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=85.81 E-value=78 Score=40.53 Aligned_cols=54 Identities=17% Similarity=0.249 Sum_probs=37.9
Q ss_pred HHHHhHHhHHHhhHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHhhhhhHHHHHH
Q 001464 417 RIEHSYQSFMGCQLGVIQDLRVAFESTKHEVLETKKNYSKEFDCLGLNLKRLID 470 (1073)
Q Consensus 417 ~~~~~~~~~l~~Q~~~l~el~~~~~~~k~ei~~~~~~~~~e~~~l~~~~~~l~~ 470 (1073)
.+...+...++.|..+.+.+...+.....++.+.++.|.-|..++...+.+...
T Consensus 455 ~kneellk~~e~q~~Enk~~~~~~~ekd~~l~~~kq~~d~e~~rik~ev~eal~ 508 (861)
T PF15254_consen 455 SKNEELLKVIENQKEENKRLRKMFQEKDQELLENKQQFDIETTRIKIEVEEALV 508 (861)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 344556667777777778888777777788888888887777776655554433
No 191
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.59 E-value=70 Score=36.25 Aligned_cols=47 Identities=19% Similarity=0.304 Sum_probs=25.1
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHH
Q 001464 314 NQLERIKTEKTNIAQKEKLEEQNALRLKKENDDRDIEISTLKQDLEL 360 (1073)
Q Consensus 314 ~~l~~l~~e~~k~eek~~~~e~~~~~l~ke~e~~~~e~~~Lk~ele~ 360 (1073)
+.+..+..++..++.+...+...+..+....+..+.++..+++++..
T Consensus 38 s~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~ 84 (265)
T COG3883 38 SKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKK 84 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555565555555555555555555555555555555433
No 192
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=85.56 E-value=78 Score=36.72 Aligned_cols=36 Identities=14% Similarity=0.026 Sum_probs=22.4
Q ss_pred CCCcchHHHHHHHHHhHhhhhcCCCCchHHHHHHHHHHHHHHHHhh
Q 001464 226 NASTKSLFNIVNRILDECVERKNGDAPHRVACLLRKVVPLIERRTA 271 (1073)
Q Consensus 226 ~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~l~kvv~e~e~ris 271 (1073)
+.+.-+|-.+|.+.... +|.. .|..-+++|+.++|+
T Consensus 50 ~~~~~sl~~~~~A~~~~--------~P~L--ely~~~c~EL~~~I~ 85 (325)
T PF08317_consen 50 DEEPPSLEDYVVAGYCT--------VPML--ELYQFSCRELKKYIS 85 (325)
T ss_pred CCCCCCHHHHHHHhccC--------ChHH--HHHHHHHHHHHHHHH
Confidence 34555777777776544 7764 455566666666655
No 193
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=85.56 E-value=58 Score=35.25 Aligned_cols=31 Identities=42% Similarity=0.503 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001464 380 KIESQKKLQELERLLTVSKKKVEELESLSES 410 (1073)
Q Consensus 380 k~ele~~l~e~e~~l~~~~~~v~~le~~~~~ 410 (1073)
+.+|..++..++..++....++..|+...+.
T Consensus 120 ReeL~~kL~~~~~~l~~~~~ki~~Lek~leL 150 (194)
T PF15619_consen 120 REELQRKLSQLEQKLQEKEKKIQELEKQLEL 150 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777777777777654433
No 194
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=85.37 E-value=76 Score=36.90 Aligned_cols=27 Identities=30% Similarity=0.290 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001464 353 TLKQDLELAKRTHELHCLQLEEQIYET 379 (1073)
Q Consensus 353 ~Lk~ele~~k~~~e~~~~~le~~~~~~ 379 (1073)
.|.-+|+..|+.|+...+.|--+++++
T Consensus 171 Kl~~qLeeEk~RHeqis~mLilEcKka 197 (561)
T KOG1103|consen 171 KLEMQLEEEKKRHEQISLMLILECKKA 197 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567777888887766665555544
No 195
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=85.36 E-value=0.38 Score=57.60 Aligned_cols=52 Identities=21% Similarity=0.330 Sum_probs=35.1
Q ss_pred ceeeeeceeeCCCCChHHHHhchHHHHHHhhcCcceeEEeecccCCCCCeeeec
Q 001464 538 HRLFKFNKVFGPEASQEEVFLDTRPLIRSVLDGYNVCIFAYGQTGSGKTYTMSG 591 (1073)
Q Consensus 538 ~k~F~FD~VF~~~atQeeVf~~~~pLV~svLdGyN~~IfAYGQTGSGKTyTM~G 591 (1073)
...|+||.... ...+...|..+..+.+.--..|| .+|-||++|+||||.+..
T Consensus 116 ~~~~tfd~fv~-g~~n~~a~~~~~~~~~~~~~~~~-~l~l~G~~G~GKThL~~a 167 (450)
T PRK00149 116 NPKYTFDNFVV-GKSNRLAHAAALAVAENPGKAYN-PLFIYGGVGLGKTHLLHA 167 (450)
T ss_pred CCCCccccccc-CCCcHHHHHHHHHHHhCcCccCC-eEEEECCCCCCHHHHHHH
Confidence 35688988443 23555567666666554323455 478899999999999865
No 196
>PRK12704 phosphodiesterase; Provisional
Probab=85.23 E-value=1.1e+02 Score=38.06 Aligned_cols=11 Identities=27% Similarity=0.280 Sum_probs=5.4
Q ss_pred ChHHHHhchHH
Q 001464 552 SQEEVFLDTRP 562 (1073)
Q Consensus 552 tQeeVf~~~~p 562 (1073)
.-++++..+..
T Consensus 283 ~iee~~~~~~~ 293 (520)
T PRK12704 283 RIEEMVEKARK 293 (520)
T ss_pred CHHHHHHHHHH
Confidence 34555555433
No 197
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=85.23 E-value=40 Score=37.23 Aligned_cols=27 Identities=19% Similarity=0.238 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001464 348 DIEISTLKQDLELAKRTHELHCLQLEE 374 (1073)
Q Consensus 348 ~~e~~~Lk~ele~~k~~~e~~~~~le~ 374 (1073)
......+-..++.+|+.|+..|.++|.
T Consensus 112 qk~~~~~~~~l~KaKk~Y~~~C~e~e~ 138 (239)
T cd07647 112 QKNKKELYKKTMKAKKSYEQKCREKDK 138 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333455567788889999999999875
No 198
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=85.17 E-value=61 Score=35.18 Aligned_cols=27 Identities=30% Similarity=0.384 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001464 382 ESQKKLQELERLLTVSKKKVEELESLS 408 (1073)
Q Consensus 382 ele~~l~e~e~~l~~~~~~v~~le~~~ 408 (1073)
.+++++++++-+-+.+..++..++.-+
T Consensus 97 ~~ek~l~~Lk~e~evL~qr~~kle~Er 123 (201)
T PF13851_consen 97 ELEKELKDLKWEHEVLEQRFEKLEQER 123 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555554444
No 199
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=85.12 E-value=70 Score=37.00 Aligned_cols=52 Identities=23% Similarity=0.334 Sum_probs=31.3
Q ss_pred hhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHH
Q 001464 306 TEENQVVANQLERIKTEKTNIAQKEKLEEQNALRLKKENDDRDIEISTLKQDLEL 360 (1073)
Q Consensus 306 ~ee~~~~~~~l~~l~~e~~k~eek~~~~e~~~~~l~ke~e~~~~e~~~Lk~ele~ 360 (1073)
++||..++.+..+|+.|....+++...+-.+ -.++....+..+..|.++|..
T Consensus 173 EeEN~~LR~Ea~~L~~et~~~EekEqqLv~d---cv~QL~~An~qia~LseELa~ 224 (306)
T PF04849_consen 173 EEENEQLRSEASQLKTETDTYEEKEQQLVLD---CVKQLSEANQQIASLSEELAR 224 (306)
T ss_pred HHHHHHHHHHHHHhhHHHhhccHHHHHHHHH---HHHHhhhcchhHHHHHHHHHH
Confidence 3477777777777776666666654433322 234555566667777777654
No 200
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=84.96 E-value=80 Score=36.32 Aligned_cols=21 Identities=38% Similarity=0.483 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001464 382 ESQKKLQELERLLTVSKKKVE 402 (1073)
Q Consensus 382 ele~~l~e~e~~l~~~~~~v~ 402 (1073)
++-+++.+++..++..++..+
T Consensus 135 ~lvq~I~~L~k~le~~~k~~e 155 (294)
T COG1340 135 ELVQKIKELRKELEDAKKALE 155 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555554444433
No 201
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=84.94 E-value=1.1e+02 Score=38.04 Aligned_cols=17 Identities=29% Similarity=0.294 Sum_probs=12.0
Q ss_pred CccchhHHHHHHHHHHH
Q 001464 598 EDWGVNYRALNDLFEIS 614 (1073)
Q Consensus 598 ~~~GIipRal~~LF~~~ 614 (1073)
++.|++-+++..||..+
T Consensus 491 ~~~g~~~~~~s~~~S~l 507 (582)
T PF09731_consen 491 EGAGLLGHLLSYLFSLL 507 (582)
T ss_pred CCCCHHHHHHHHHHhee
Confidence 34578888888887644
No 202
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=84.89 E-value=73 Score=39.23 Aligned_cols=52 Identities=23% Similarity=0.281 Sum_probs=33.9
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001464 345 DDRDIEISTLKQDLELAKRTHELHCLQLEEQIYETKIESQKKLQELERLLTVSKKKV 401 (1073)
Q Consensus 345 e~~~~e~~~Lk~ele~~k~~~e~~~~~le~~~~~~k~ele~~l~e~e~~l~~~~~~v 401 (1073)
++....+.+|+.|.+.++++|-.-..++-. -..++++|++++..+......+
T Consensus 319 ~k~ke~n~~L~~Eie~V~~sY~l~e~e~~~-----vr~~e~eL~el~~~~~~i~~~~ 370 (570)
T COG4477 319 EKAKENNEHLKEEIERVKESYRLAETELGS-----VRKFEKELKELESVLDEILENI 370 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccChhHHHH-----HHHHHHHHHHHHHHHHHHHHHh
Confidence 445556678889998888888764444332 3456777777777776555443
No 203
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.42 E-value=1.1e+02 Score=37.65 Aligned_cols=29 Identities=31% Similarity=0.359 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHhhhhhHH
Q 001464 256 ACLLRKVVPLIERRTATQYQNFKNQNNLF 284 (1073)
Q Consensus 256 ~~~l~kvv~e~e~ris~q~~~~~~q~~~~ 284 (1073)
-+||++-+.+.|.||-||.--|..--.-+
T Consensus 245 ~~llr~t~~~~e~riEtqkqtl~ardesI 273 (654)
T KOG4809|consen 245 QFLLRSTDPSGEQRIETQKQTLDARDESI 273 (654)
T ss_pred HHHHHhcCchHHHHHHHHHhhhhhHHHHH
Confidence 37999999999999999987665543333
No 204
>PRK09087 hypothetical protein; Validated
Probab=84.36 E-value=0.57 Score=51.19 Aligned_cols=48 Identities=17% Similarity=0.091 Sum_probs=32.4
Q ss_pred eeeeeceeeCCCCChHHHHhchHHHHHHhhcCcceeEEeecccCCCCCeeeec
Q 001464 539 RLFKFNKVFGPEASQEEVFLDTRPLIRSVLDGYNVCIFAYGQTGSGKTYTMSG 591 (1073)
Q Consensus 539 k~F~FD~VF~~~atQeeVf~~~~pLV~svLdGyN~~IfAYGQTGSGKTyTM~G 591 (1073)
..|+||..+...++. .+|..+ +....-.|..++-||++||||||-+..
T Consensus 16 ~~~~~~~Fi~~~~N~-~a~~~l----~~~~~~~~~~l~l~G~~GsGKThLl~~ 63 (226)
T PRK09087 16 PAYGRDDLLVTESNR-AAVSLV----DHWPNWPSPVVVLAGPVGSGKTHLASI 63 (226)
T ss_pred CCCChhceeecCchH-HHHHHH----HhcccCCCCeEEEECCCCCCHHHHHHH
Confidence 358899988655443 366533 332222355689999999999999864
No 205
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=84.32 E-value=25 Score=45.13 Aligned_cols=27 Identities=15% Similarity=0.297 Sum_probs=12.3
Q ss_pred HhhhcccchhHHHHHHHHHHHHHHHHH
Q 001464 339 RLKKENDDRDIEISTLKQDLELAKRTH 365 (1073)
Q Consensus 339 ~l~ke~e~~~~e~~~Lk~ele~~k~~~ 365 (1073)
.|+.++++--.++..++++.+.++...
T Consensus 569 ~Lk~~~e~Ql~~L~~l~e~~~~l~~~a 595 (717)
T PF10168_consen 569 LLKQQKEQQLKELQELQEERKSLRESA 595 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444555555555444433
No 206
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=84.26 E-value=79 Score=40.07 Aligned_cols=19 Identities=5% Similarity=0.008 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHhhhhh
Q 001464 256 ACLLRKVVPLIERRTATQY 274 (1073)
Q Consensus 256 ~~~l~kvv~e~e~ris~q~ 274 (1073)
...+..++.+..+||....
T Consensus 318 ~~~~~~~l~~~~~~i~~~~ 336 (650)
T TIGR03185 318 NQLTQEELEERDKELLESL 336 (650)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555444
No 207
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=84.11 E-value=42 Score=40.30 Aligned_cols=9 Identities=11% Similarity=0.076 Sum_probs=3.9
Q ss_pred cHHHHHHHH
Q 001464 91 NVKRFLAAM 99 (1073)
Q Consensus 91 NI~~FL~ac 99 (1073)
+..-||.+|
T Consensus 87 t~~Dll~F~ 95 (493)
T KOG0804|consen 87 TSHDLLRFC 95 (493)
T ss_pred cHHHHHHHH
Confidence 344444444
No 208
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=84.08 E-value=1.1e+02 Score=37.09 Aligned_cols=22 Identities=23% Similarity=0.264 Sum_probs=15.5
Q ss_pred HHHHHHHHHhhhhhhhhhhccC
Q 001464 473 EKYHVILAENRRLYNEVQDLKG 494 (1073)
Q Consensus 473 ~~y~~~l~erRkL~N~vqeLKG 494 (1073)
+++-.+..++-++|-++..||.
T Consensus 448 ~r~~~~eqe~ek~~kqiekLK~ 469 (488)
T PF06548_consen 448 ERAMDAEQENEKAKKQIEKLKR 469 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556677888888888774
No 209
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=84.04 E-value=36 Score=35.24 Aligned_cols=70 Identities=21% Similarity=0.290 Sum_probs=48.5
Q ss_pred CcchHHHHHHHHHhHhhhhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHhhhhhHHHhhHHHHHHHHHHHhhhhccchh
Q 001464 228 STKSLFNIVNRILDECVERKNGDAPHRVACLLRKVVPLIERRTATQYQNFKNQNNLFRAREEKYKSRIRVLETLTVGTTE 307 (1073)
Q Consensus 228 ~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~l~kvv~e~e~ris~q~~~~~~q~~~~~~~~~~~~~~~~~le~l~~~~~e 307 (1073)
.+.+-++.+++- ++-||+|--||-..|...|.+| +|-.+|++...+ .||.++-.++.
T Consensus 28 ~s~sals~f~Ak-EeeIErkKmeVrekVq~~Lgrv-eEetkrLa~ire---------------------eLE~l~dP~Rk 84 (159)
T PF04949_consen 28 MSRSALSAFRAK-EEEIERKKMEVREKVQAQLGRV-EEETKRLAEIRE---------------------ELEVLADPMRK 84 (159)
T ss_pred hhHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHH---------------------HHHhhccchHH
Confidence 344556666665 4457888888888888888877 455677766554 46677888888
Q ss_pred hHHHHHHHHHHHH
Q 001464 308 ENQVVANQLERIK 320 (1073)
Q Consensus 308 e~~~~~~~l~~l~ 320 (1073)
|++.+...++.++
T Consensus 85 Ev~~vRkkID~vN 97 (159)
T PF04949_consen 85 EVEMVRKKIDSVN 97 (159)
T ss_pred HHHHHHHHHHHHH
Confidence 8888777766633
No 210
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=84.04 E-value=26 Score=35.08 Aligned_cols=26 Identities=19% Similarity=0.321 Sum_probs=14.4
Q ss_pred HHHHHHHHhHHHHHHHHHhhHHHHHh
Q 001464 435 DLRVAFESTKHEVLETKKNYSKEFDC 460 (1073)
Q Consensus 435 el~~~~~~~k~ei~~~~~~~~~e~~~ 460 (1073)
+....+..++.+|..++.-|..+++.
T Consensus 93 EK~E~veEL~~Dv~DlK~myr~Qi~~ 118 (120)
T PF12325_consen 93 EKSEEVEELRADVQDLKEMYREQIDQ 118 (120)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445556666666666665543
No 211
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=83.93 E-value=1.3e+02 Score=38.03 Aligned_cols=32 Identities=28% Similarity=0.296 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHhhhcccchhHHHHHHHHHHHH
Q 001464 329 KEKLEEQNALRLKKENDDRDIEISTLKQDLEL 360 (1073)
Q Consensus 329 k~~~~e~~~~~l~ke~e~~~~e~~~Lk~ele~ 360 (1073)
+.-.+|+.|--+.||.+...+|+..||.+|.+
T Consensus 410 Rva~lEkKvqa~~kERDalr~e~kslk~ela~ 441 (961)
T KOG4673|consen 410 RVATLEKKVQALTKERDALRREQKSLKKELAA 441 (961)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 33356666777777777777888888877765
No 212
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=83.18 E-value=0.75 Score=51.25 Aligned_cols=49 Identities=20% Similarity=0.175 Sum_probs=35.9
Q ss_pred eeeceeeCCCCChHHHHhchHHHHHHhhcCcceeEEeecccCCCCCeeeec
Q 001464 541 FKFNKVFGPEASQEEVFLDTRPLIRSVLDGYNVCIFAYGQTGSGKTYTMSG 591 (1073)
Q Consensus 541 F~FD~VF~~~atQeeVf~~~~pLV~svLdGyN~~IfAYGQTGSGKTyTM~G 591 (1073)
|.|..+-.....+..+|..+..++..+-.|.|. +-||++|+||||-..+
T Consensus 76 ~~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~nl--~l~G~~G~GKThLa~A 124 (254)
T COG1484 76 FEEFDFEFQPGIDKKALEDLASLVEFFERGENL--VLLGPPGVGKTHLAIA 124 (254)
T ss_pred cccccccCCcchhHHHHHHHHHHHHHhccCCcE--EEECCCCCcHHHHHHH
Confidence 444333345567888888888888777766554 6699999999999875
No 213
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=83.07 E-value=0.76 Score=49.09 Aligned_cols=47 Identities=19% Similarity=0.386 Sum_probs=32.5
Q ss_pred eeeeceeeCCCCChHHHHhchHHHHHHhhcCcceeEEeecccCCCCCeeeec
Q 001464 540 LFKFNKVFGPEASQEEVFLDTRPLIRSVLDGYNVCIFAYGQTGSGKTYTMSG 591 (1073)
Q Consensus 540 ~F~FD~VF~~~atQeeVf~~~~pLV~svLdGyN~~IfAYGQTGSGKTyTM~G 591 (1073)
.|+||....+ .+..++...+.++. .+....|+-||++|+||||....
T Consensus 11 ~~~~~~~~~~--~~~~~~~~l~~~~~---~~~~~~lll~G~~G~GKT~la~~ 57 (226)
T TIGR03420 11 DPTFDNFYAG--GNAELLAALRQLAA---GKGDRFLYLWGESGSGKSHLLQA 57 (226)
T ss_pred chhhcCcCcC--CcHHHHHHHHHHHh---cCCCCeEEEECCCCCCHHHHHHH
Confidence 4778776632 44555555544432 45677899999999999998753
No 214
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=83.05 E-value=3.8 Score=49.47 Aligned_cols=42 Identities=33% Similarity=0.411 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhcCCCCCCCCccHHHHHHHchhhHHHHHHHhhhcCCCc
Q 001464 32 LSTLVEWLNEMIPHIHLPFEASEEKLRACLVDGTVLCLVLNKLSPDSV 79 (1073)
Q Consensus 32 ~~e~~~Wie~vlg~~~lp~~~s~edl~~~LrDGviLC~L~N~l~Pgsv 79 (1073)
++-.+-||+.+-. .|....+.+-|+||.||-.+..+|.||.|
T Consensus 390 er~fr~WmNSlgv------~p~vn~~f~Dl~dglVllq~~dki~pg~V 431 (627)
T KOG0046|consen 390 ERTFRLWMNSLGV------NPYVNNLFEDLRDGLVLLQLYDKVSPGSV 431 (627)
T ss_pred HHHHHHHHHhcCC------cHHHHHHHHhhhhhhHHHHHHHHccCCcc
Confidence 3456789987654 45667899999999999999999999999
No 215
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=82.68 E-value=3 Score=48.66 Aligned_cols=19 Identities=32% Similarity=0.564 Sum_probs=15.8
Q ss_pred ceeEEeecccCCCCCeeee
Q 001464 572 NVCIFAYGQTGSGKTYTMS 590 (1073)
Q Consensus 572 N~~IfAYGQTGSGKTyTM~ 590 (1073)
...|+-||++|+|||++.-
T Consensus 156 p~gvLL~GppGtGKT~lak 174 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLAK 174 (364)
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 3458899999999998864
No 216
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=82.63 E-value=0.81 Score=49.34 Aligned_cols=49 Identities=16% Similarity=0.304 Sum_probs=31.8
Q ss_pred eeeeeceeeCCCCChHHHHhchHHHHHHhhcCcceeEEeecccCCCCCeeeec
Q 001464 539 RLFKFNKVFGPEASQEEVFLDTRPLIRSVLDGYNVCIFAYGQTGSGKTYTMSG 591 (1073)
Q Consensus 539 k~F~FD~VF~~~atQeeVf~~~~pLV~svLdGyN~~IfAYGQTGSGKTyTM~G 591 (1073)
..|+||.+++ ... ..++..++.++.. .+.+..|+-||++|+||||.+..
T Consensus 13 ~~~~~d~f~~-~~~-~~~~~~l~~~~~~--~~~~~~~~l~G~~G~GKT~La~a 61 (227)
T PRK08903 13 PPPTFDNFVA-GEN-AELVARLRELAAG--PVADRFFYLWGEAGSGRSHLLQA 61 (227)
T ss_pred Chhhhccccc-CCc-HHHHHHHHHHHhc--cCCCCeEEEECCCCCCHHHHHHH
Confidence 3588999873 222 3344444444442 23456789999999999998754
No 217
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=82.55 E-value=69 Score=33.72 Aligned_cols=89 Identities=19% Similarity=0.281 Sum_probs=43.5
Q ss_pred hhhHHHhhhhhHHHhhHHHHHHHHHHHhhhhccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhcccchhHHH
Q 001464 272 TQYQNFKNQNNLFRAREEKYKSRIRVLETLTVGTTEENQVVANQLERIKTEKTNIAQKEKLEEQNALRLKKENDDRDIEI 351 (1073)
Q Consensus 272 ~q~~~~~~q~~~~~~~~~~~~~~~~~le~l~~~~~ee~~~~~~~l~~l~~e~~k~eek~~~~e~~~~~l~ke~e~~~~e~ 351 (1073)
++.+.++-.+...+....+.+.+++..|.+.-|-. .-...||+.|.....++...-..++.+|..-.......+
T Consensus 6 ~~i~~~Rl~~~~lk~~l~k~~~ql~~ke~lge~L~------~iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L 79 (177)
T PF13870_consen 6 NEISKLRLKNITLKHQLAKLEEQLRQKEELGEGLH------LIDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQIL 79 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555556666666666666666666554432 123445555555444443333344444444433333444
Q ss_pred HHHHHHHHHHHHHHH
Q 001464 352 STLKQDLELAKRTHE 366 (1073)
Q Consensus 352 ~~Lk~ele~~k~~~e 366 (1073)
.+.|+.|..+.....
T Consensus 80 ~h~keKl~~~~~~~~ 94 (177)
T PF13870_consen 80 THVKEKLHFLSEELE 94 (177)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555544444333
No 218
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=82.40 E-value=17 Score=43.11 Aligned_cols=18 Identities=33% Similarity=0.593 Sum_probs=15.1
Q ss_pred ceeEEeecccCCCCCeee
Q 001464 572 NVCIFAYGQTGSGKTYTM 589 (1073)
Q Consensus 572 N~~IfAYGQTGSGKTyTM 589 (1073)
...|+-||++|+|||+..
T Consensus 165 p~gvLL~GppGtGKT~lA 182 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLLA 182 (389)
T ss_pred CCceEEECCCCCChHHHH
Confidence 345899999999999875
No 219
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=81.55 E-value=91 Score=34.48 Aligned_cols=10 Identities=20% Similarity=0.395 Sum_probs=4.9
Q ss_pred hhhhhhhhhc
Q 001464 483 RRLYNEVQDL 492 (1073)
Q Consensus 483 RkL~N~vqeL 492 (1073)
+.|...+.+|
T Consensus 225 ~eld~~l~el 234 (237)
T PF00261_consen 225 EELDQTLNEL 234 (237)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHh
Confidence 4455555554
No 220
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=81.51 E-value=1.1e+02 Score=37.72 Aligned_cols=46 Identities=13% Similarity=0.271 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhhHHHHHhhhhhHHHHHHHHHHHHH
Q 001464 432 VIQDLRVAFESTKHEVLETKKNYSKEFDCLGLNLKRLIDAAEKYHV 477 (1073)
Q Consensus 432 ~l~el~~~~~~~k~ei~~~~~~~~~e~~~l~~~~~~l~~~~~~y~~ 477 (1073)
+++++...+..++.|+..+++.|.++++.|-.++..|.+....-+.
T Consensus 463 eL~~a~~~i~~LqDEL~TTr~NYE~QLs~MSEHLasmNeqL~~Q~e 508 (518)
T PF10212_consen 463 ELKEANQNISRLQDELETTRRNYEEQLSMMSEHLASMNEQLAKQRE 508 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666777788889999999999999999999998888776554443
No 221
>PLN02939 transferase, transferring glycosyl groups
Probab=81.46 E-value=1.1e+02 Score=40.77 Aligned_cols=17 Identities=29% Similarity=0.382 Sum_probs=10.4
Q ss_pred HHHHHHHHHHhhhhccc
Q 001464 289 EKYKSRIRVLETLTVGT 305 (1073)
Q Consensus 289 ~~~~~~~~~le~l~~~~ 305 (1073)
|..|..|++||.-.+++
T Consensus 166 ~~~~~~~~~~~~~~~~~ 182 (977)
T PLN02939 166 EALQGKINILEMRLSET 182 (977)
T ss_pred HHHHhhHHHHHHHhhhh
Confidence 34466777777655554
No 222
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=81.36 E-value=0.67 Score=55.78 Aligned_cols=50 Identities=26% Similarity=0.422 Sum_probs=34.1
Q ss_pred eeeeceeeCCCCChHHHHhchHHHHHHhhcCcceeEEeecccCCCCCeeeec
Q 001464 540 LFKFNKVFGPEASQEEVFLDTRPLIRSVLDGYNVCIFAYGQTGSGKTYTMSG 591 (1073)
Q Consensus 540 ~F~FD~VF~~~atQeeVf~~~~pLV~svLdGyN~~IfAYGQTGSGKTyTM~G 591 (1073)
.|+||..+... +++..|..+..++..-=..|| .+|-||.+|+||||.|..
T Consensus 111 ~~tFdnFv~g~-~n~~A~~aa~~~a~~~~~~~n-pl~i~G~~G~GKTHLl~A 160 (450)
T PRK14087 111 ENTFENFVIGS-SNEQAFIAVQTVSKNPGISYN-PLFIYGESGMGKTHLLKA 160 (450)
T ss_pred ccchhcccCCC-cHHHHHHHHHHHHhCcCcccC-ceEEECCCCCcHHHHHHH
Confidence 48999976544 455567656555543212345 488999999999999865
No 223
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=81.26 E-value=0.92 Score=52.23 Aligned_cols=39 Identities=28% Similarity=0.499 Sum_probs=26.3
Q ss_pred ChHHHHhchHHHHHHhhc-CcceeEEeecccCCCCCeeee
Q 001464 552 SQEEVFLDTRPLIRSVLD-GYNVCIFAYGQTGSGKTYTMS 590 (1073)
Q Consensus 552 tQeeVf~~~~pLV~svLd-GyN~~IfAYGQTGSGKTyTM~ 590 (1073)
..++-++.....+..++. +...+++-||++|+|||+++.
T Consensus 19 gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~ 58 (365)
T TIGR02928 19 HRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTK 58 (365)
T ss_pred CcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHH
Confidence 344444444445555554 455689999999999999864
No 224
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.17 E-value=1.4e+02 Score=36.24 Aligned_cols=104 Identities=18% Similarity=0.251 Sum_probs=53.9
Q ss_pred HHhhhhccchhhHHHHHHHHHHHH----HHhhhHHHHHHHHHHHHHHhhhccc-----chh-HHHHHHHHHHHHHHHHHH
Q 001464 297 VLETLTVGTTEENQVVANQLERIK----TEKTNIAQKEKLEEQNALRLKKEND-----DRD-IEISTLKQDLELAKRTHE 366 (1073)
Q Consensus 297 ~le~l~~~~~ee~~~~~~~l~~l~----~e~~k~eek~~~~e~~~~~l~ke~e-----~~~-~e~~~Lk~ele~~k~~~e 366 (1073)
.++.|+-|. .-++.+...+..+. .-...|+.-+.-+.+...+|.++++ +.. .+|..|.++|+.+-+.++
T Consensus 284 l~e~l~dge-ayLaKL~~~l~~~~~~~~~ltqqwed~R~pll~kkl~Lr~~l~~~e~e~~e~~~IqeleqdL~a~~eei~ 362 (521)
T KOG1937|consen 284 LIEALDDGE-AYLAKLMGKLAELNKQMEELTQQWEDTRQPLLQKKLQLREELKNLETEDEEIRRIQELEQDLEAVDEEIE 362 (521)
T ss_pred HHHhcCChH-hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666554 23344444443322 2334566666655555555555542 233 567778888888776666
Q ss_pred HHH-------HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 001464 367 LHC-------LQLEEQIYET-KIESQKKLQELERLLTVSKKKV 401 (1073)
Q Consensus 367 ~~~-------~~le~~~~~~-k~ele~~l~e~e~~l~~~~~~v 401 (1073)
... .+++....+. +..+.++++|+.....+.+.+|
T Consensus 363 ~~eel~~~Lrsele~lp~dv~rk~ytqrikEi~gniRKq~~DI 405 (521)
T KOG1937|consen 363 SNEELAEKLRSELEKLPDDVQRKVYTQRIKEIDGNIRKQEQDI 405 (521)
T ss_pred hhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHHHHHH
Confidence 332 2222221111 3455677777665555444443
No 225
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=81.16 E-value=1.4e+02 Score=36.25 Aligned_cols=28 Identities=14% Similarity=0.228 Sum_probs=14.5
Q ss_pred HHhhhhccchhhHHHHHHHHHHHHHHhh
Q 001464 297 VLETLTVGTTEENQVVANQLERIKTEKT 324 (1073)
Q Consensus 297 ~le~l~~~~~ee~~~~~~~l~~l~~e~~ 324 (1073)
.||.+.....-+++.|..-++|.|.|++
T Consensus 116 eLEe~C~eQAakIeQLNrLVqQyK~ErE 143 (488)
T PF06548_consen 116 ELEEVCAEQAAKIEQLNRLVQQYKHERE 143 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 4455555555555555555555554443
No 226
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=81.07 E-value=31 Score=41.34 Aligned_cols=16 Identities=19% Similarity=0.277 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 001464 378 ETKIESQKKLQELERL 393 (1073)
Q Consensus 378 ~~k~ele~~l~e~e~~ 393 (1073)
++....++++.||+..
T Consensus 428 ~~~~s~d~~I~dLqEQ 443 (493)
T KOG0804|consen 428 EALGSKDEKITDLQEQ 443 (493)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333334444444333
No 227
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=80.87 E-value=0.71 Score=54.75 Aligned_cols=51 Identities=22% Similarity=0.397 Sum_probs=31.9
Q ss_pred eeeeeceeeCCCCChHHHHhchHHHHHHhhcCcceeEEeecccCCCCCeeeec
Q 001464 539 RLFKFNKVFGPEASQEEVFLDTRPLIRSVLDGYNVCIFAYGQTGSGKTYTMSG 591 (1073)
Q Consensus 539 k~F~FD~VF~~~atQeeVf~~~~pLV~svLdGyN~~IfAYGQTGSGKTyTM~G 591 (1073)
..|+||...... ++.-.|..+..+-+..-.-||. ||-||.+|+||||-|..
T Consensus 82 ~~ytFdnFv~g~-~N~~A~aa~~~va~~~g~~~np-lfi~G~~GlGKTHLl~A 132 (408)
T COG0593 82 PKYTFDNFVVGP-SNRLAYAAAKAVAENPGGAYNP-LFIYGGVGLGKTHLLQA 132 (408)
T ss_pred CCCchhheeeCC-chHHHHHHHHHHHhccCCcCCc-EEEECCCCCCHHHHHHH
Confidence 359999966444 4444444333222222122554 78999999999999964
No 228
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=80.63 E-value=1.4e+02 Score=36.03 Aligned_cols=26 Identities=19% Similarity=0.247 Sum_probs=12.1
Q ss_pred hHHHhhHHHHHHHHHHHHHhHHHHHH
Q 001464 424 SFMGCQLGVIQDLRVAFESTKHEVLE 449 (1073)
Q Consensus 424 ~~l~~Q~~~l~el~~~~~~~k~ei~~ 449 (1073)
.-+..++..+++|+..-..++.+|..
T Consensus 217 ~~l~~~q~~l~eL~~~~~~L~~~Ias 242 (420)
T COG4942 217 SELSADQKKLEELRANESRLKNEIAS 242 (420)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 33344444455555544444444433
No 229
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=80.48 E-value=1.4e+02 Score=35.92 Aligned_cols=13 Identities=46% Similarity=0.368 Sum_probs=5.6
Q ss_pred hhHHHHHHHHHHH
Q 001464 428 CQLGVIQDLRVAF 440 (1073)
Q Consensus 428 ~Q~~~l~el~~~~ 440 (1073)
.|....|+++...
T Consensus 346 lql~~eq~l~~rm 358 (502)
T KOG0982|consen 346 LQLICEQKLRVRM 358 (502)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444433
No 230
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=80.40 E-value=1.6e+02 Score=36.55 Aligned_cols=7 Identities=29% Similarity=0.344 Sum_probs=3.5
Q ss_pred HHHHhch
Q 001464 554 EEVFLDT 560 (1073)
Q Consensus 554 eeVf~~~ 560 (1073)
++||..+
T Consensus 279 ee~~~~~ 285 (514)
T TIGR03319 279 EEMVEKA 285 (514)
T ss_pred HHHHHHH
Confidence 4555544
No 231
>PRK06526 transposase; Provisional
Probab=80.37 E-value=0.64 Score=51.84 Aligned_cols=40 Identities=20% Similarity=0.244 Sum_probs=25.8
Q ss_pred eCCCCChHHHHhc-hHHHHHHhhcCcceeEEeecccCCCCCeeeec
Q 001464 547 FGPEASQEEVFLD-TRPLIRSVLDGYNVCIFAYGQTGSGKTYTMSG 591 (1073)
Q Consensus 547 F~~~atQeeVf~~-~~pLV~svLdGyN~~IfAYGQTGSGKTyTM~G 591 (1073)
+.+.-++..+..- +.+.|+ .+.| |+.||++|+||||.+.+
T Consensus 77 ~~~~~~~~~~~~l~~~~fi~---~~~n--lll~Gp~GtGKThLa~a 117 (254)
T PRK06526 77 HQRSLKRDTIAHLGTLDFVT---GKEN--VVFLGPPGTGKTHLAIG 117 (254)
T ss_pred cCCCcchHHHHHHhcCchhh---cCce--EEEEeCCCCchHHHHHH
Confidence 3344445444432 234443 4555 68899999999999875
No 232
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=80.32 E-value=5.1 Score=47.69 Aligned_cols=51 Identities=22% Similarity=0.374 Sum_probs=31.0
Q ss_pred eeeeceeeCCCCChHHHHhch-HHHHH-Hhhc--C--cceeEEeecccCCCCCeeee
Q 001464 540 LFKFNKVFGPEASQEEVFLDT-RPLIR-SVLD--G--YNVCIFAYGQTGSGKTYTMS 590 (1073)
Q Consensus 540 ~F~FD~VF~~~atQeeVf~~~-~pLV~-svLd--G--yN~~IfAYGQTGSGKTyTM~ 590 (1073)
.++|+.|-+.+..-+++-+.+ .|+.. ..+. | ....|+-||++|+|||+..-
T Consensus 141 ~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAk 197 (398)
T PTZ00454 141 DVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAK 197 (398)
T ss_pred CCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHH
Confidence 366777766555444454433 34432 2333 2 24568899999999998763
No 233
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=80.25 E-value=2.4e+02 Score=38.52 Aligned_cols=15 Identities=13% Similarity=0.169 Sum_probs=10.5
Q ss_pred chhHHHHHHHHHHHH
Q 001464 601 GVNYRALNDLFEISE 615 (1073)
Q Consensus 601 GIipRal~~LF~~~~ 615 (1073)
|-|-+++.+|+....
T Consensus 1127 eeiN~iI~elW~~tY 1141 (1294)
T KOG0962|consen 1127 EEINRIIRELWRKTY 1141 (1294)
T ss_pred HHHHHHHHHHHHhcc
Confidence 667777777777554
No 234
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=80.17 E-value=62 Score=37.42 Aligned_cols=25 Identities=24% Similarity=0.238 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001464 381 IESQKKLQELERLLTVSKKKVEELE 405 (1073)
Q Consensus 381 ~ele~~l~e~e~~l~~~~~~v~~le 405 (1073)
..|.+|++.++.+...++.+...|.
T Consensus 163 e~Lq~Klk~LEeEN~~LR~Ea~~L~ 187 (306)
T PF04849_consen 163 EALQEKLKSLEEENEQLRSEASQLK 187 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4567777777777777777666654
No 235
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=79.65 E-value=1.4e+02 Score=37.90 Aligned_cols=22 Identities=23% Similarity=0.347 Sum_probs=11.8
Q ss_pred eeEEEecCCCccccCCcchhhh
Q 001464 724 SLHLIDLAGSERVDRSEATGDR 745 (1073)
Q Consensus 724 kL~LVDLAGSER~~ks~~~g~r 745 (1073)
.+.++|-.|.+.....-+.|++
T Consensus 536 ~~~l~~~~g~~~~~~~lS~Ge~ 557 (650)
T TIGR03185 536 AVSLYDNNGKHIDKERLSAGER 557 (650)
T ss_pred eEEEEcCCCCCcCCCCCCHHHH
Confidence 4556666666554444455543
No 236
>PRK08181 transposase; Validated
Probab=79.51 E-value=1 Score=50.66 Aligned_cols=21 Identities=29% Similarity=0.629 Sum_probs=18.0
Q ss_pred cCcceeEEeecccCCCCCeeeec
Q 001464 569 DGYNVCIFAYGQTGSGKTYTMSG 591 (1073)
Q Consensus 569 dGyN~~IfAYGQTGSGKTyTM~G 591 (1073)
.|.| |+-||++|+||||-+.+
T Consensus 105 ~~~n--lll~Gp~GtGKTHLa~A 125 (269)
T PRK08181 105 KGAN--LLLFGPPGGGKSHLAAA 125 (269)
T ss_pred cCce--EEEEecCCCcHHHHHHH
Confidence 4665 78999999999999876
No 237
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=79.20 E-value=20 Score=41.36 Aligned_cols=37 Identities=30% Similarity=0.376 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHH
Q 001464 326 IAQKEKLEEQNALRLKKENDDRDIEISTLKQDLELAK 362 (1073)
Q Consensus 326 ~eek~~~~e~~~~~l~ke~e~~~~e~~~Lk~ele~~k 362 (1073)
++++...+.+++..|.++.+..+.|+..|+.+++.++
T Consensus 55 le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~ 91 (314)
T PF04111_consen 55 LEQEEEELLQELEELEKEREELDQELEELEEELEELD 91 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444455555555555555555555554443
No 238
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=79.06 E-value=87 Score=39.75 Aligned_cols=70 Identities=16% Similarity=0.160 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001464 327 AQKEKLEEQNALRLKKENDDRDIEISTLKQDLELAKRTHELHCLQLEEQIYETKIESQKKLQELERLLTVSKKKVE 402 (1073)
Q Consensus 327 eek~~~~e~~~~~l~ke~e~~~~e~~~Lk~ele~~k~~~e~~~~~le~~~~~~k~ele~~l~e~e~~l~~~~~~v~ 402 (1073)
++...+.|++.-.-.+ .+....-.+.|.+.++++...++.+.. .+ +...+++..++++-.+|+..+.+.+
T Consensus 118 qerLelaE~~l~qs~r-ae~lpeveael~qr~~al~~aee~~~~-~e----er~~kl~~~~qe~naeL~rarqree 187 (916)
T KOG0249|consen 118 QERLELAEPKLQQSLR-AETLPEVEAELAQRNAALTKAEEHSGN-IE----ERTRKLEEQLEELNAELQRARQREK 187 (916)
T ss_pred hHHHHHhhHhhHhHHh-hhhhhhhHHHHHHHHHHHHHHHHhhcc-HH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444554444444 333322234555555555444333221 22 2233444555555555555444443
No 239
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=78.81 E-value=23 Score=43.98 Aligned_cols=24 Identities=17% Similarity=0.210 Sum_probs=17.6
Q ss_pred HHHHHHchhhHHHHHHHhhhcCCC
Q 001464 55 EKLRACLVDGTVLCLVLNKLSPDS 78 (1073)
Q Consensus 55 edl~~~LrDGviLC~L~N~l~Pgs 78 (1073)
|++.+...|+-=|.+++..+-||.
T Consensus 57 DnvyEL~~~~~~li~il~~lP~~t 80 (652)
T COG2433 57 DNVYELGADKRDLIRILKRLPEGT 80 (652)
T ss_pred ccHHHHhcChhHHHHHHHhCCCCc
Confidence 457777778888888888876654
No 240
>PRK08727 hypothetical protein; Validated
Probab=78.74 E-value=1.1 Score=48.93 Aligned_cols=45 Identities=18% Similarity=0.291 Sum_probs=27.9
Q ss_pred eeeeceeeCCCCChHHHHhchHHHHHHhhcCc-ceeEEeecccCCCCCeeeec
Q 001464 540 LFKFNKVFGPEASQEEVFLDTRPLIRSVLDGY-NVCIFAYGQTGSGKTYTMSG 591 (1073)
Q Consensus 540 ~F~FD~VF~~~atQeeVf~~~~pLV~svLdGy-N~~IfAYGQTGSGKTyTM~G 591 (1073)
.|+||.-+...+ + ....+.++ ..|+ .-.|+-||++|+||||.+..
T Consensus 15 ~~~f~~f~~~~~-n--~~~~~~~~----~~~~~~~~l~l~G~~G~GKThL~~a 60 (233)
T PRK08727 15 DQRFDSYIAAPD-G--LLAQLQAL----AAGQSSDWLYLSGPAGTGKTHLALA 60 (233)
T ss_pred cCChhhccCCcH-H--HHHHHHHH----HhccCCCeEEEECCCCCCHHHHHHH
Confidence 478888664433 2 22222222 2233 24599999999999999865
No 241
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=78.72 E-value=21 Score=44.29 Aligned_cols=21 Identities=43% Similarity=0.707 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001464 384 QKKLQELERLLTVSKKKVEEL 404 (1073)
Q Consensus 384 e~~l~e~e~~l~~~~~~v~~l 404 (1073)
+.++..|+..|++.+..+++|
T Consensus 480 ~~~I~~L~~~L~e~~~~ve~L 500 (652)
T COG2433 480 DRRIERLEKELEEKKKRVEEL 500 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443
No 242
>PRK08939 primosomal protein DnaI; Reviewed
Probab=78.71 E-value=0.85 Score=52.23 Aligned_cols=51 Identities=14% Similarity=0.316 Sum_probs=34.0
Q ss_pred eeeceeeCCCCChHHHHhchHHHHHHhhcC-cceeEEeecccCCCCCeeeec
Q 001464 541 FKFNKVFGPEASQEEVFLDTRPLIRSVLDG-YNVCIFAYGQTGSGKTYTMSG 591 (1073)
Q Consensus 541 F~FD~VF~~~atQeeVf~~~~pLV~svLdG-yN~~IfAYGQTGSGKTyTM~G 591 (1073)
.+||.+-.....+..++..+...++....| ..-.|+-||++|+||||-+.+
T Consensus 124 atf~~~~~~~~~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~A 175 (306)
T PRK08939 124 ASLADIDLDDRDRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAA 175 (306)
T ss_pred CcHHHhcCCChHHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHH
Confidence 455554333335666666666667665543 234689999999999999876
No 243
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=78.65 E-value=0.88 Score=46.12 Aligned_cols=29 Identities=28% Similarity=0.303 Sum_probs=20.1
Q ss_pred HHHHhhcC-cceeEEeecccCCCCCeeeec
Q 001464 563 LIRSVLDG-YNVCIFAYGQTGSGKTYTMSG 591 (1073)
Q Consensus 563 LV~svLdG-yN~~IfAYGQTGSGKTyTM~G 591 (1073)
+++.+-.+ .+.-++..++||||||++|..
T Consensus 15 i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~ 44 (184)
T PF04851_consen 15 IINSLENKKEERRVLLNAPTGSGKTIIALA 44 (184)
T ss_dssp HHHHHHTTSGCSEEEEEESTTSSHHHHHHH
T ss_pred HHHHHHhcCCCCCEEEEECCCCCcChhhhh
Confidence 33333333 355567788999999999986
No 244
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=78.27 E-value=2e+02 Score=36.54 Aligned_cols=74 Identities=20% Similarity=0.316 Sum_probs=40.5
Q ss_pred CCCcchHHHHHHHHHhHhhhhcCC------CCchHHHHH---HHHHHHHHHHH----hhhhhHH---HhhhhhHHHhhHH
Q 001464 226 NASTKSLFNIVNRILDECVERKNG------DAPHRVACL---LRKVVPLIERR----TATQYQN---FKNQNNLFRAREE 289 (1073)
Q Consensus 226 ~~~~~~l~~~~~~~l~~~~~~~~~------~~~~~~~~~---l~kvv~e~e~r----is~q~~~---~~~q~~~~~~~~~ 289 (1073)
|..|+-|-.++..-...+.|+..- |--+++..+ +.|.|..||-= =..|.++ ++.+..-|.-.++
T Consensus 150 nnaTR~lCNlLKeT~~rsaEK~~~yE~EREET~qly~~l~~niekMi~aFEeLR~qAEn~r~EM~fKlKE~~~k~~~lee 229 (786)
T PF05483_consen 150 NNATRHLCNLLKETCQRSAEKMKKYEYEREETRQLYMDLNENIEKMIAAFEELRVQAENDRQEMHFKLKEDYEKFEDLEE 229 (786)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888888777766665432 333333333 34555556421 1222222 4555556666677
Q ss_pred HHHHHHHHHh
Q 001464 290 KYKSRIRVLE 299 (1073)
Q Consensus 290 ~~~~~~~~le 299 (1073)
.|+..+++-|
T Consensus 230 ey~~E~n~kE 239 (786)
T PF05483_consen 230 EYKKEVNDKE 239 (786)
T ss_pred HHHHHhhhHH
Confidence 7766655544
No 245
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=77.90 E-value=38 Score=31.57 Aligned_cols=46 Identities=20% Similarity=0.302 Sum_probs=36.8
Q ss_pred HhHHhHHHhhHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHhhhhhH
Q 001464 420 HSYQSFMGCQLGVIQDLRVAFESTKHEVLETKKNYSKEFDCLGLNL 465 (1073)
Q Consensus 420 ~~~~~~l~~Q~~~l~el~~~~~~~k~ei~~~~~~~~~e~~~l~~~~ 465 (1073)
..+...+..|...++.++..+..+...-.+++..|.+++..|...+
T Consensus 28 ~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~eL 73 (79)
T PF08581_consen 28 DEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQYEEEIARLRREL 73 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667788888999999998888888889999999987765443
No 246
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=77.78 E-value=10 Score=47.74 Aligned_cols=28 Identities=32% Similarity=0.508 Sum_probs=22.1
Q ss_pred HHHHhhcCcceeEEeecccCCCCCeeee
Q 001464 563 LIRSVLDGYNVCIFAYGQTGSGKTYTMS 590 (1073)
Q Consensus 563 LV~svLdGyN~~IfAYGQTGSGKTyTM~ 590 (1073)
++..+..++...|+-||++|+|||+..-
T Consensus 166 l~~~ia~~~~~~vlL~Gp~GtGKTTLAr 193 (615)
T TIGR02903 166 LLAKVASPFPQHIILYGPPGVGKTTAAR 193 (615)
T ss_pred HHHHHhcCCCCeEEEECCCCCCHHHHHH
Confidence 4555566778788999999999998753
No 247
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=77.66 E-value=1.5e+02 Score=35.60 Aligned_cols=18 Identities=11% Similarity=-0.082 Sum_probs=8.6
Q ss_pred hHHHHHHHHHhHhhhhcC
Q 001464 231 SLFNIVNRILDECVERKN 248 (1073)
Q Consensus 231 ~l~~~~~~~l~~~~~~~~ 248 (1073)
+++..|-++.-.+.+.|+
T Consensus 222 lili~v~gcw~ay~Qnk~ 239 (575)
T KOG4403|consen 222 LILIGVGGCWFAYRQNKK 239 (575)
T ss_pred HHHHHhhhhhhhhhhhhH
Confidence 334445555555554443
No 248
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=77.35 E-value=1e+02 Score=32.61 Aligned_cols=15 Identities=13% Similarity=0.567 Sum_probs=8.6
Q ss_pred hHHHHHHHHHhHhhh
Q 001464 231 SLFNIVNRILDECVE 245 (1073)
Q Consensus 231 ~l~~~~~~~l~~~~~ 245 (1073)
.+..++..+|.++++
T Consensus 23 ~i~~~l~~~l~~~~~ 37 (177)
T PF07798_consen 23 AIMKALREVLNDSLE 37 (177)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455566666666543
No 249
>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 2 (PSTPIP2), also known as Macrophage Actin-associated tYrosine Phosphorylated protein (MAYP), is mostly expressed in hematopoietic cells but is also expressed in the brain. It is involved in regulating cell adhesion and motility. Mutations in the gene encoding murine PSTPIP2 can cause autoinflammatory disorders such as chronic multifocal osteomyelitis and macrophage autoinflammatory disease. PSTPIP2 contains an N-terminal F-BAR domain and lacks the PEST motifs and SH3 domain that are found in PSTPIP1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They ca
Probab=77.17 E-value=1.3e+02 Score=33.62 Aligned_cols=37 Identities=19% Similarity=0.110 Sum_probs=22.4
Q ss_pred HHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001464 331 KLEEQNALRLKKENDDRDIEISTLKQDLELAKRTHELHCLQLEE 374 (1073)
Q Consensus 331 ~~~e~~~~~l~ke~e~~~~e~~~Lk~ele~~k~~~e~~~~~le~ 374 (1073)
+..++.+.++.+. ...+-..++..|+.|+..|.+.+.
T Consensus 103 Kk~e~~~ek~~K~-------~~~~~k~~~ksKk~Ye~~Cke~~~ 139 (240)
T cd07672 103 KKIELIMDAIHKQ-------RAMQFKKTMESKKNYEQKCRDKDE 139 (240)
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555553 233445677788888888887554
No 250
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=77.01 E-value=1.3e+02 Score=33.74 Aligned_cols=67 Identities=21% Similarity=0.271 Sum_probs=32.3
Q ss_pred HHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001464 337 ALRLKKENDDRDIEISTLKQDLELAKRTHELHCLQLEEQIYETKIESQKKLQELERLLTVSKKKVEELESL 407 (1073)
Q Consensus 337 ~~~l~ke~e~~~~e~~~Lk~ele~~k~~~e~~~~~le~~~~~~k~ele~~l~e~e~~l~~~~~~v~~le~~ 407 (1073)
+..+...+-+...++..|+.|++..|.+.+.+..+- ......|+..+.-.....+.+++-|++||..
T Consensus 54 L~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~----y~q~s~Leddlsqt~aikeql~kyiReLEQa 120 (333)
T KOG1853|consen 54 LDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQF----YQQESQLEDDLSQTHAIKEQLRKYIRELEQA 120 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444445555566666666665555443332 1222344444444444455555555555543
No 251
>cd07671 F-BAR_PSTPIP1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 1 (PSTPIP1), also known as CD2 Binding Protein 1 (CD2BP1), is mainly expressed in hematopoietic cells. It is a binding partner of the cell surface receptor CD2 and PTP-PEST, a tyrosine phosphatase which functions in cell motility and Rac1 regulation. It also plays a role in the activation of the Wiskott-Aldrich syndrome protein (WASP), which couples actin rearrangement and T cell activation. Mutations in the gene encoding PSTPIP1 cause the autoinflammatory disorder known as PAPA (pyogenic sterile arthritis, pyoderma gangrenosum, and acne) syndrome. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain. F-BAR
Probab=76.98 E-value=1.3e+02 Score=33.61 Aligned_cols=39 Identities=26% Similarity=0.296 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001464 329 KEKLEEQNALRLKKENDDRDIEISTLKQDLELAKRTHELHCLQLEE 374 (1073)
Q Consensus 329 k~~~~e~~~~~l~ke~e~~~~e~~~Lk~ele~~k~~~e~~~~~le~ 374 (1073)
+++..+..+.++.+.. ..+-..++..|+.|+..|.+.+.
T Consensus 100 ~rK~~e~~~eK~qk~~-------~~~~k~l~ksKk~Ye~~Cke~~~ 138 (242)
T cd07671 100 QRKKYEAVMERVQKSK-------VSLYKKTMESKKTYEQRCREADE 138 (242)
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555544443 33456777888889988888765
No 252
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=76.89 E-value=32 Score=42.08 Aligned_cols=26 Identities=27% Similarity=0.367 Sum_probs=14.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001464 347 RDIEISTLKQDLELAKRTHELHCLQL 372 (1073)
Q Consensus 347 ~~~e~~~Lk~ele~~k~~~e~~~~~l 372 (1073)
....+..|++||+.+++-||.+...|
T Consensus 467 a~~~i~~LqDEL~TTr~NYE~QLs~M 492 (518)
T PF10212_consen 467 ANQNISRLQDELETTRRNYEEQLSMM 492 (518)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 33445555555555555555555544
No 253
>KOG3631 consensus Alpha-parvin and related focal adhesion proteins [Cytoskeleton]
Probab=76.52 E-value=4.3 Score=45.32 Aligned_cols=97 Identities=20% Similarity=0.403 Sum_probs=69.4
Q ss_pred hHHHHHHHHHHhcCCCCCCCCccHHHHHHHchhhHHHHHHHhhhcCCCc--cCCCC--CCCCcccHHHHHHHH-HhCCCC
Q 001464 31 QLSTLVEWLNEMIPHIHLPFEASEEKLRACLVDGTVLCLVLNKLSPDSV--EMGAN--FEPGPANVKRFLAAM-DDMGLP 105 (1073)
Q Consensus 31 r~~e~~~Wie~vlg~~~lp~~~s~edl~~~LrDGviLC~L~N~l~Pgsv--~k~~~--~~~~~eNI~~FL~ac-~~~Gvp 105 (1073)
...-+..||++++-.+.+-. ..|.+-|-||.||-+|..++.-=-+ +.+.. .-| -.-+.--|.++ +.+++|
T Consensus 91 l~kvLi~WiN~~L~~erIvV----r~LeEDlfDGqilqkL~ekL~~~klev~evtqse~~Q-kqKLq~Vleavnr~L~~~ 165 (365)
T KOG3631|consen 91 LVKVLIDWINDVLVPERIVV----RSLEEDLFDGQILQKLFEKLAALKLEVAEVTQSEIGQ-KQKLQTVLEAVNRSLQLP 165 (365)
T ss_pred HHHHHHHHHHHhhcchhhhH----HhhHHhhhhhHHHHHHHHHHHhhhccchhhhhhhHHH-HHHHHHHHHHHHHHhcCc
Confidence 44467899999987565533 3577888899999999999853222 11110 001 22567778888 789999
Q ss_pred CCcc---ccc-cCCCchhHHHHHHHHHhhhh
Q 001464 106 RFEL---SDL-EQGNMAPVLQCLRSLRASFS 132 (1073)
Q Consensus 106 ~Fe~---~DL-E~~n~~~Vv~cL~aL~~~~~ 132 (1073)
..++ +|+ -++|+..++.-|.+|..||.
T Consensus 166 ~~q~kWsvdsIh~Kdl~ailhLLVaLa~~fr 196 (365)
T KOG3631|consen 166 EWQAKWSVDSIHNKDLVAILHLLVALAKHFR 196 (365)
T ss_pred hhhhccchhhhccchHHHHHHHHHHHHHHcC
Confidence 9443 566 99999999999999998885
No 254
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=76.45 E-value=2.1e+02 Score=35.72 Aligned_cols=31 Identities=23% Similarity=0.251 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHh-----hhhhhhhhhccCC
Q 001464 465 LKRLIDAAEKYHVILAEN-----RRLYNEVQDLKGN 495 (1073)
Q Consensus 465 ~~~l~~~~~~y~~~l~er-----RkL~N~vqeLKGn 495 (1073)
.+.|.-++......+..- +-|..+|.-|+.-
T Consensus 407 ~~~l~~a~~~l~~~l~~~~~~~~~p~~~el~~l~~~ 442 (582)
T PF09731_consen 407 AQQLWLAVDALKSALDSGNAGSPRPFEDELRALKEL 442 (582)
T ss_pred HHHHHHHHHHHHHHHHcCCCcCCCCHHHHHHHHHHh
Confidence 334444444444444433 5666666666653
No 255
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=76.41 E-value=3.3e+02 Score=37.93 Aligned_cols=11 Identities=18% Similarity=0.302 Sum_probs=5.9
Q ss_pred HHHHHHHHhhh
Q 001464 262 VVPLIERRTAT 272 (1073)
Q Consensus 262 vv~e~e~ris~ 272 (1073)
-|.|++++|..
T Consensus 743 ri~el~~~Iae 753 (1353)
T TIGR02680 743 RIAELDARLAA 753 (1353)
T ss_pred HHHHHHHHHHH
Confidence 45566666543
No 256
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=76.37 E-value=1.7 Score=50.59 Aligned_cols=37 Identities=30% Similarity=0.455 Sum_probs=24.6
Q ss_pred HHHHhchHHHHHHhhc-CcceeEEeecccCCCCCeeee
Q 001464 554 EEVFLDTRPLIRSVLD-GYNVCIFAYGQTGSGKTYTMS 590 (1073)
Q Consensus 554 eeVf~~~~pLV~svLd-GyN~~IfAYGQTGSGKTyTM~ 590 (1073)
++-+......+..++. +...+++-||++|+|||+++.
T Consensus 36 e~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~ 73 (394)
T PRK00411 36 EEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVK 73 (394)
T ss_pred HHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHH
Confidence 3344444444555554 445678999999999999864
No 257
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=76.34 E-value=1.5 Score=51.41 Aligned_cols=30 Identities=37% Similarity=0.585 Sum_probs=22.3
Q ss_pred hHHHHHHhhcCccee-EEeecccCCCCCeee
Q 001464 560 TRPLIRSVLDGYNVC-IFAYGQTGSGKTYTM 589 (1073)
Q Consensus 560 ~~pLV~svLdGyN~~-IfAYGQTGSGKTyTM 589 (1073)
+...+..++.|.-.. ++.||.||+|||.|+
T Consensus 29 l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~ 59 (366)
T COG1474 29 LASFLAPALRGERPSNIIIYGPTGTGKTATV 59 (366)
T ss_pred HHHHHHHHhcCCCCccEEEECCCCCCHhHHH
Confidence 344566666665444 999999999999886
No 258
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=76.32 E-value=65 Score=36.62 Aligned_cols=59 Identities=29% Similarity=0.440 Sum_probs=38.1
Q ss_pred chhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Q 001464 346 DRDIEISTLKQDLELAKRTH-ELHCLQLEEQIYETKIESQKKLQELERLLTVSKKKVEELESLSESKSQ 413 (1073)
Q Consensus 346 ~~~~e~~~Lk~ele~~k~~~-e~~~~~le~~~~~~k~ele~~l~e~e~~l~~~~~~v~~le~~~~~~~~ 413 (1073)
+.+.||..||-+|.-+++.| |+.|...|.+. -|||.+.++..++.-|+.+.+-...|++
T Consensus 86 dRetEI~eLksQL~RMrEDWIEEECHRVEAQL---------ALKEARkEIkQLkQvieTmrssL~ekDk 145 (305)
T PF15290_consen 86 DRETEIDELKSQLARMREDWIEEECHRVEAQL---------ALKEARKEIKQLKQVIETMRSSLAEKDK 145 (305)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHhhhchhhh
Confidence 36789999999999999885 56677766653 3555555555555555554444333433
No 259
>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
Probab=76.32 E-value=2.2 Score=50.81 Aligned_cols=79 Identities=15% Similarity=0.164 Sum_probs=52.5
Q ss_pred HHHHHHHHHHhcCCCCCCCCccHHHHHHHchhhHHHHHHHhhhcCCCc-cCCC---------CCCCCcccHHHHHHHHHh
Q 001464 32 LSTLVEWLNEMIPHIHLPFEASEEKLRACLVDGTVLCLVLNKLSPDSV-EMGA---------NFEPGPANVKRFLAAMDD 101 (1073)
Q Consensus 32 ~~e~~~Wie~vlg~~~lp~~~s~edl~~~LrDGviLC~L~N~l~Pgsv-~k~~---------~~~~~~eNI~~FL~ac~~ 101 (1073)
+..++.|=...+| .-.| +.+.-||...-|||.++|+|+|...|..+ +.+. +.++.++|-+.|+...+.
T Consensus 127 ~~~lllwc~~~t~-~y~p-~vd~~df~rswrdGLaf~aLIh~~rPDtld~n~ld~qkknk~~n~~qafe~a~k~Igi~rl 204 (612)
T COG5069 127 HINLLLWCDEDTG-GYKP-EVDTFDFFRSWRDGLAFSALIHDSRPDTLDPNVLDLQKKNKALNNFQAFENANKVIGIARL 204 (612)
T ss_pred hhhhheecccccc-CcCC-CccHHHHHHHhhhhHHHHHHHhhcCCcccCccccchhhcccchhHHHHHHHHHHhhchHhh
Confidence 3355566666666 3334 55677899999999999999999999966 2221 223446677777777777
Q ss_pred CCCCCCccccc
Q 001464 102 MGLPRFELSDL 112 (1073)
Q Consensus 102 ~Gvp~Fe~~DL 112 (1073)
+|+-+-.-++.
T Consensus 205 i~vedivnV~~ 215 (612)
T COG5069 205 IGVEDIVNVSI 215 (612)
T ss_pred cCcceeeecCC
Confidence 77665333333
No 260
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=76.16 E-value=0.84 Score=59.15 Aligned_cols=58 Identities=34% Similarity=0.405 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001464 348 DIEISTLKQDLELAKRTHELHCLQLEEQIYETKIESQKKLQELERLLTVSKKKVEELE 405 (1073)
Q Consensus 348 ~~e~~~Lk~ele~~k~~~e~~~~~le~~~~~~k~ele~~l~e~e~~l~~~~~~v~~le 405 (1073)
...++.+..+|..++..|+......-....+++..|..++.++...++.....+..|+
T Consensus 291 ~~qlsk~~~El~~~k~K~e~e~~~~~EelEeaKKkL~~~L~el~e~le~~~~~~~~Le 348 (859)
T PF01576_consen 291 ERQLSKLNAELEQWKKKYEEEAEQRTEELEEAKKKLERKLQELQEQLEEANAKVSSLE 348 (859)
T ss_dssp ----------------------------------------------------------
T ss_pred HHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777777777777665554444456667777777777776666655555444
No 261
>PRK10884 SH3 domain-containing protein; Provisional
Probab=76.05 E-value=25 Score=38.42 Aligned_cols=21 Identities=33% Similarity=0.453 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001464 383 SQKKLQELERLLTVSKKKVEE 403 (1073)
Q Consensus 383 le~~l~e~e~~l~~~~~~v~~ 403 (1073)
|+++.++++.+++.++++++.
T Consensus 137 L~~~n~~L~~~l~~~~~~~~~ 157 (206)
T PRK10884 137 LKEENQKLKNQLIVAQKKVDA 157 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444333
No 262
>PLN02939 transferase, transferring glycosyl groups
Probab=75.80 E-value=1.4e+02 Score=39.82 Aligned_cols=52 Identities=19% Similarity=0.311 Sum_probs=23.5
Q ss_pred HHHHHHHhhhhccchhhHHHHHHHHHHHHHHhhhHHHHHH----------HHHHHHHHhhhcc
Q 001464 292 KSRIRVLETLTVGTTEENQVVANQLERIKTEKTNIAQKEK----------LEEQNALRLKKEN 344 (1073)
Q Consensus 292 ~~~~~~le~l~~~~~ee~~~~~~~l~~l~~e~~k~eek~~----------~~e~~~~~l~ke~ 344 (1073)
+-|..+|+-+..--. |-+.+..+++-|.+...+.+++.| +.|+.+.+|..|+
T Consensus 149 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (977)
T PLN02939 149 QARLQALEDLEKILT-EKEALQGKINILEMRLSETDARIKLAAQEKIHVEILEEQLEKLRNEL 210 (977)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHhhHHHHHHHhhhhhhhhhhhhhccccchhhHHHHHHHhhhh
Confidence 555555555443222 223344444444444333333322 3455566666665
No 263
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=75.73 E-value=2.4e+02 Score=36.16 Aligned_cols=20 Identities=15% Similarity=0.215 Sum_probs=10.0
Q ss_pred HHHHHHhhcCcceeEEeecc
Q 001464 561 RPLIRSVLDGYNVCIFAYGQ 580 (1073)
Q Consensus 561 ~pLV~svLdGyN~~IfAYGQ 580 (1073)
++.++.=-.-+..|=-|||+
T Consensus 671 q~r~etRqRKCP~Cn~aFga 690 (698)
T KOG0978|consen 671 QTRYETRQRKCPKCNAAFGA 690 (698)
T ss_pred HHHHHHhcCCCCCCCCCCCc
Confidence 44544444455555445554
No 264
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=75.56 E-value=2.2e+02 Score=35.61 Aligned_cols=21 Identities=14% Similarity=0.246 Sum_probs=9.7
Q ss_pred HHHHHHHHHhHHHHHHHHHhh
Q 001464 434 QDLRVAFESTKHEVLETKKNY 454 (1073)
Q Consensus 434 ~el~~~~~~~k~ei~~~~~~~ 454 (1073)
..++.....+..++...+..|
T Consensus 316 ~~~~~~~~~l~~e~~~v~~sY 336 (560)
T PF06160_consen 316 EHAKEQNKELKEELERVSQSY 336 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 344444444445554444444
No 265
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=75.47 E-value=95 Score=31.29 Aligned_cols=16 Identities=25% Similarity=0.389 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 001464 387 LQELERLLTVSKKKVE 402 (1073)
Q Consensus 387 l~e~e~~l~~~~~~v~ 402 (1073)
|..++..+...+.++.
T Consensus 61 L~~lr~e~~~~~~~~~ 76 (132)
T PF07926_consen 61 LQQLREELQELQQEIN 76 (132)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 266
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=75.39 E-value=0.96 Score=42.72 Aligned_cols=17 Identities=35% Similarity=0.374 Sum_probs=15.3
Q ss_pred EEeecccCCCCCeeeec
Q 001464 575 IFAYGQTGSGKTYTMSG 591 (1073)
Q Consensus 575 IfAYGQTGSGKTyTM~G 591 (1073)
++.+|+||+|||+++..
T Consensus 3 ~~i~~~~G~GKT~~~~~ 19 (144)
T cd00046 3 VLLAAPTGSGKTLAALL 19 (144)
T ss_pred EEEECCCCCchhHHHHH
Confidence 57899999999999976
No 267
>PRK12704 phosphodiesterase; Provisional
Probab=75.37 E-value=1.2e+02 Score=37.67 Aligned_cols=13 Identities=15% Similarity=0.140 Sum_probs=7.8
Q ss_pred hhhhhhhhhhccC
Q 001464 482 NRRLYNEVQDLKG 494 (1073)
Q Consensus 482 rRkL~N~vqeLKG 494 (1073)
|+-+-..+|..-+
T Consensus 191 ~~i~~~a~qr~a~ 203 (520)
T PRK12704 191 KEILAQAIQRCAA 203 (520)
T ss_pred HHHHHHHHHhhcc
Confidence 4556666776654
No 268
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=75.26 E-value=87 Score=37.90 Aligned_cols=156 Identities=19% Similarity=0.238 Sum_probs=0.0
Q ss_pred hhhhcCCCCch------HHHHHHHHHHHHHHHHhhhhhHHHhhhhhHHHhhHHHHHHHHHHHhhhhccchh---hHHHHH
Q 001464 243 CVERKNGDAPH------RVACLLRKVVPLIERRTATQYQNFKNQNNLFRAREEKYKSRIRVLETLTVGTTE---ENQVVA 313 (1073)
Q Consensus 243 ~~~~~~~~~~~------~~~~~l~kvv~e~e~ris~q~~~~~~q~~~~~~~~~~~~~~~~~le~l~~~~~e---e~~~~~ 313 (1073)
++|+|..|+-+ ++..+++|.-+-||.=|--.+.-+=..|.+-+..--. ..+|....+.-.| |.+.+.
T Consensus 342 yLe~kvkeLQ~k~~kQqvfvDiinkLk~niEeLIedKY~viLEKnd~~k~lqnL----qe~la~tqk~LqEsr~eKetLq 417 (527)
T PF15066_consen 342 YLEKKVKELQMKITKQQVFVDIINKLKENIEELIEDKYRVILEKNDIEKTLQNL----QEALANTQKHLQESRNEKETLQ 417 (527)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHhHhhhhhhhHHHHHHHH----HHHHHHHHHHHHHHHhhHHHHH
Q ss_pred HHHHHHHHHhhhHHHHHHHHHH----------HHHHhhhcccchhHHHHHHHHHHHH-----------HHHHHHHHHHHH
Q 001464 314 NQLERIKTEKTNIAQKEKLEEQ----------NALRLKKENDDRDIEISTLKQDLEL-----------AKRTHELHCLQL 372 (1073)
Q Consensus 314 ~~l~~l~~e~~k~eek~~~~e~----------~~~~l~ke~e~~~~e~~~Lk~ele~-----------~k~~~e~~~~~l 372 (1073)
-+++.+|..--.++|+-+.+-+ +|++..-.++..-..+..||.+|+. .|++-|...+.|
T Consensus 418 lelkK~k~nyv~LQEry~~eiQqKnksvsqclEmdk~LskKeeeverLQ~lkgelEkat~SALdlLkrEKe~~EqefLsl 497 (527)
T PF15066_consen 418 LELKKIKANYVHLQERYMTEIQQKNKSVSQCLEMDKTLSKKEEEVERLQQLKGELEKATTSALDLLKREKETREQEFLSL 497 (527)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001464 373 EEQIYETKIESQKKLQELERLLTVSKKKVE 402 (1073)
Q Consensus 373 e~~~~~~k~ele~~l~e~e~~l~~~~~~v~ 402 (1073)
+..-.+.+.+..+..+.|+..++++-.+|+
T Consensus 498 qeEfQk~ekenl~ERqkLKs~leKLvaqvk 527 (527)
T PF15066_consen 498 QEEFQKHEKENLEERQKLKSRLEKLVAQVK 527 (527)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHhcC
No 269
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=74.82 E-value=51 Score=37.82 Aligned_cols=65 Identities=12% Similarity=0.248 Sum_probs=41.5
Q ss_pred HHHhhhhhHHHhhHHHHHHHHHHHhhhhccchhhHHHHHHHHHHHH-----------------HHhhhHHHHHHHHHHHH
Q 001464 275 QNFKNQNNLFRAREEKYKSRIRVLETLTVGTTEENQVVANQLERIK-----------------TEKTNIAQKEKLEEQNA 337 (1073)
Q Consensus 275 ~~~~~q~~~~~~~~~~~~~~~~~le~l~~~~~ee~~~~~~~l~~l~-----------------~e~~k~eek~~~~e~~~ 337 (1073)
|.+.+||.-++...|-|+...++|+.+..+.--|++.|...+.+|. ...+++.|+++.+|-++
T Consensus 3 dd~QN~N~EL~kQiEIcqEENkiLdK~hRQKV~EVEKLsqTi~ELEEaiLagGaaaNavrdYqrq~~elneEkrtLeREL 82 (351)
T PF07058_consen 3 DDVQNQNQELMKQIEICQEENKILDKMHRQKVLEVEKLSQTIRELEEAILAGGAAANAVRDYQRQVQELNEEKRTLEREL 82 (351)
T ss_pred hhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666777777777787777777667777666555543 13345666677666665
Q ss_pred HH
Q 001464 338 LR 339 (1073)
Q Consensus 338 ~~ 339 (1073)
.|
T Consensus 83 AR 84 (351)
T PF07058_consen 83 AR 84 (351)
T ss_pred HH
Confidence 54
No 270
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=74.76 E-value=1.5e+02 Score=33.14 Aligned_cols=10 Identities=30% Similarity=0.627 Sum_probs=4.3
Q ss_pred hhhhhhhhhh
Q 001464 482 NRRLYNEVQD 491 (1073)
Q Consensus 482 rRkL~N~vqe 491 (1073)
|+.+..++..
T Consensus 146 r~~l~~~l~~ 155 (302)
T PF10186_consen 146 RRQLIQELSE 155 (302)
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 271
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=74.25 E-value=1.7 Score=41.52 Aligned_cols=20 Identities=30% Similarity=0.446 Sum_probs=16.1
Q ss_pred cceeEEeecccCCCCCeeee
Q 001464 571 YNVCIFAYGQTGSGKTYTMS 590 (1073)
Q Consensus 571 yN~~IfAYGQTGSGKTyTM~ 590 (1073)
....++.+|++|+|||+++.
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~ 37 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLAR 37 (151)
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 44568899999999997653
No 272
>PRK06921 hypothetical protein; Provisional
Probab=74.12 E-value=1.8 Score=48.52 Aligned_cols=38 Identities=21% Similarity=0.308 Sum_probs=26.7
Q ss_pred HHHHhchHHHHHHhhc---CcceeEEeecccCCCCCeeeec
Q 001464 554 EEVFLDTRPLIRSVLD---GYNVCIFAYGQTGSGKTYTMSG 591 (1073)
Q Consensus 554 eeVf~~~~pLV~svLd---GyN~~IfAYGQTGSGKTyTM~G 591 (1073)
..++..+...++.+-. +..-.|+-||++|+||||.+..
T Consensus 96 ~~~~~~~~~~~~~f~~~~~~~~~~l~l~G~~G~GKThLa~a 136 (266)
T PRK06921 96 KDAYECAVEYVKDFEKIQESRKNSIALLGQPGSGKTHLLTA 136 (266)
T ss_pred HHHHHHHHHHHHHHHHhcccCCCeEEEECCCCCcHHHHHHH
Confidence 3455556667776542 2345688999999999999875
No 273
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=74.12 E-value=2e+02 Score=34.37 Aligned_cols=29 Identities=7% Similarity=0.141 Sum_probs=14.9
Q ss_pred hhhhhHHHhhhhhHHHhhHHHHHHHHHHH
Q 001464 270 TATQYQNFKNQNNLFRAREEKYKSRIRVL 298 (1073)
Q Consensus 270 is~q~~~~~~q~~~~~~~~~~~~~~~~~l 298 (1073)
+..|.+.++.+..--..+...|+.+.+++
T Consensus 176 l~~ql~~~~~~l~~ae~~l~~fr~~~~i~ 204 (444)
T TIGR03017 176 FVQQIAALREDLARAQSKLSAYQQEKGIV 204 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 34444444444444555556666654444
No 274
>PRK10436 hypothetical protein; Provisional
Probab=73.30 E-value=1.4 Score=53.29 Aligned_cols=29 Identities=38% Similarity=0.438 Sum_probs=24.0
Q ss_pred HHHHhhcCcceeEEeecccCCCCCeeeec
Q 001464 563 LIRSVLDGYNVCIFAYGQTGSGKTYTMSG 591 (1073)
Q Consensus 563 LV~svLdGyN~~IfAYGQTGSGKTyTM~G 591 (1073)
.+..++..-++.|+..|+||||||.||.-
T Consensus 209 ~l~~~~~~~~GliLvtGpTGSGKTTtL~a 237 (462)
T PRK10436 209 QFRQALQQPQGLILVTGPTGSGKTVTLYS 237 (462)
T ss_pred HHHHHHHhcCCeEEEECCCCCChHHHHHH
Confidence 45566667788999999999999999964
No 275
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=73.11 E-value=1.5e+02 Score=36.88 Aligned_cols=13 Identities=23% Similarity=0.330 Sum_probs=8.3
Q ss_pred hhhhhhhhhhccC
Q 001464 482 NRRLYNEVQDLKG 494 (1073)
Q Consensus 482 rRkL~N~vqeLKG 494 (1073)
|+-+-..+|..-+
T Consensus 185 ~~i~~~aiqr~a~ 197 (514)
T TIGR03319 185 KEILATAIQRYAG 197 (514)
T ss_pred HHHHHHHHHhccc
Confidence 4556677776654
No 276
>PRK00106 hypothetical protein; Provisional
Probab=72.82 E-value=2.6e+02 Score=35.03 Aligned_cols=6 Identities=33% Similarity=0.379 Sum_probs=2.5
Q ss_pred HHHHhc
Q 001464 554 EEVFLD 559 (1073)
Q Consensus 554 eeVf~~ 559 (1073)
++||..
T Consensus 300 Ee~v~k 305 (535)
T PRK00106 300 EELVEK 305 (535)
T ss_pred HHHHHH
Confidence 444443
No 277
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=72.72 E-value=1 Score=43.64 Aligned_cols=19 Identities=32% Similarity=0.436 Sum_probs=13.4
Q ss_pred ceeEEeecccCCCCCeeee
Q 001464 572 NVCIFAYGQTGSGKTYTMS 590 (1073)
Q Consensus 572 N~~IfAYGQTGSGKTyTM~ 590 (1073)
+.+++.||++|+|||.++.
T Consensus 4 ~~~~~i~G~~G~GKT~~~~ 22 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIK 22 (131)
T ss_dssp ---EEEEE-TTSSHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHH
Confidence 4578999999999998763
No 278
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=72.53 E-value=1.5 Score=54.30 Aligned_cols=30 Identities=27% Similarity=0.361 Sum_probs=24.9
Q ss_pred HHHHHhhcCcceeEEeecccCCCCCeeeec
Q 001464 562 PLIRSVLDGYNVCIFAYGQTGSGKTYTMSG 591 (1073)
Q Consensus 562 pLV~svLdGyN~~IfAYGQTGSGKTyTM~G 591 (1073)
..+..++..-++.|+..|+||||||.||..
T Consensus 306 ~~l~~~~~~~~Glilv~G~tGSGKTTtl~a 335 (564)
T TIGR02538 306 ALFLEAIHKPQGMVLVTGPTGSGKTVSLYT 335 (564)
T ss_pred HHHHHHHHhcCCeEEEECCCCCCHHHHHHH
Confidence 345666777788999999999999999865
No 279
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=72.10 E-value=1.7 Score=52.85 Aligned_cols=30 Identities=30% Similarity=0.364 Sum_probs=24.6
Q ss_pred HHHHHhhcCcceeEEeecccCCCCCeeeec
Q 001464 562 PLIRSVLDGYNVCIFAYGQTGSGKTYTMSG 591 (1073)
Q Consensus 562 pLV~svLdGyN~~IfAYGQTGSGKTyTM~G 591 (1073)
..+..++..-++.|+..|+||||||.||..
T Consensus 232 ~~l~~~~~~~~GlilitGptGSGKTTtL~a 261 (486)
T TIGR02533 232 SRFERLIRRPHGIILVTGPTGSGKTTTLYA 261 (486)
T ss_pred HHHHHHHhcCCCEEEEEcCCCCCHHHHHHH
Confidence 355666777778899999999999999964
No 280
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=71.89 E-value=2.8e+02 Score=35.04 Aligned_cols=62 Identities=10% Similarity=0.112 Sum_probs=36.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHhhHHHHHhhhhhHHHHHHHHHHHHHHHHHh-hhh--hhhhhhccC
Q 001464 433 IQDLRVAFESTKHEVLETKKNYSKEFDCLGLNLKRLIDAAEKYHVILAEN-RRL--YNEVQDLKG 494 (1073)
Q Consensus 433 l~el~~~~~~~k~ei~~~~~~~~~e~~~l~~~~~~l~~~~~~y~~~l~er-RkL--~N~vqeLKG 494 (1073)
+-.+...+..+-.+|...+....++.+....++..|......|..++++= ++| ++.+.++|-
T Consensus 287 L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~sDYeeIK~ 351 (629)
T KOG0963|consen 287 LNQKDSEIAQLSNDIERLEASLVEEREKHKAQISALEKELKAKISELEELKEKLNSRSDYEEIKK 351 (629)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHH
Confidence 33455556666666666666667777666667777776666676666543 333 233445543
No 281
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=71.82 E-value=3.4e+02 Score=36.10 Aligned_cols=6 Identities=17% Similarity=0.396 Sum_probs=3.7
Q ss_pred hcCCCc
Q 001464 74 LSPDSV 79 (1073)
Q Consensus 74 l~Pgsv 79 (1073)
+.||+|
T Consensus 17 f~~GsI 22 (1072)
T KOG0979|consen 17 FPDGSI 22 (1072)
T ss_pred CCCCce
Confidence 456666
No 282
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=71.73 E-value=2.1 Score=51.53 Aligned_cols=52 Identities=23% Similarity=0.375 Sum_probs=35.3
Q ss_pred ceeeeeceeeCCCCChHHHHhchHHHHHHh--hcC--cceeEEeecccCCCCCeeeec
Q 001464 538 HRLFKFNKVFGPEASQEEVFLDTRPLIRSV--LDG--YNVCIFAYGQTGSGKTYTMSG 591 (1073)
Q Consensus 538 ~k~F~FD~VF~~~atQeeVf~~~~pLV~sv--LdG--yN~~IfAYGQTGSGKTyTM~G 591 (1073)
...|+||.-+-. .++...|..+..+.+.. ..| ||. +|-||++|+||||.+..
T Consensus 105 ~~~~tFdnFv~g-~~N~~a~~~a~~~a~~~~~~~~~~~np-l~L~G~~G~GKTHLl~A 160 (445)
T PRK12422 105 DPLMTFANFLVT-PENDLPHRILQEFTKVSEQGKGFPFNP-IYLFGPEGSGKTHLMQA 160 (445)
T ss_pred CccccccceeeC-CcHHHHHHHHHHHHhccccccCCCCce-EEEEcCCCCCHHHHHHH
Confidence 346999997753 35556666666665433 223 454 67899999999999865
No 283
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=71.53 E-value=1.8e+02 Score=32.64 Aligned_cols=18 Identities=6% Similarity=0.204 Sum_probs=7.9
Q ss_pred chHHHHHHHHHHHHHHHH
Q 001464 252 PHRVACLLRKVVPLIERR 269 (1073)
Q Consensus 252 ~~~~~~~l~kvv~e~e~r 269 (1073)
|+.+.+-+.....++...
T Consensus 19 ~~~l~~~~e~~~~~L~~~ 36 (264)
T PF06008_consen 19 PYKLLSSIEDLTNQLRSY 36 (264)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444433
No 284
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=71.35 E-value=1.9 Score=43.36 Aligned_cols=27 Identities=33% Similarity=0.489 Sum_probs=21.9
Q ss_pred HHHHhhcCcceeEEeecccCCCCCeeeec
Q 001464 563 LIRSVLDGYNVCIFAYGQTGSGKTYTMSG 591 (1073)
Q Consensus 563 LV~svLdGyN~~IfAYGQTGSGKTyTM~G 591 (1073)
++..++.|.| ++..|+||||||+....
T Consensus 7 ~~~~i~~~~~--~li~aptGsGKT~~~~~ 33 (169)
T PF00270_consen 7 AIEAIISGKN--VLISAPTGSGKTLAYIL 33 (169)
T ss_dssp HHHHHHTTSE--EEEECSTTSSHHHHHHH
T ss_pred HHHHHHcCCC--EEEECCCCCccHHHHHH
Confidence 4566667777 78899999999999875
No 285
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=71.06 E-value=3.3e+02 Score=35.57 Aligned_cols=50 Identities=18% Similarity=0.213 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001464 326 IAQKEKLEEQNALRLKKENDDRDIEISTLKQDLELAKRTHELHCLQLEEQ 375 (1073)
Q Consensus 326 ~eek~~~~e~~~~~l~ke~e~~~~e~~~Lk~ele~~k~~~e~~~~~le~~ 375 (1073)
+.+.+--.+.++..|+...+..++|+..||-|+..+.+..+.+..+.+-.
T Consensus 125 l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~keleir~~E~~~~ 174 (769)
T PF05911_consen 125 LSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELEIRNEEREYS 174 (769)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444456677788888888888888888888888777766655554443
No 286
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=70.93 E-value=1.6e+02 Score=31.91 Aligned_cols=34 Identities=18% Similarity=0.376 Sum_probs=20.6
Q ss_pred HHHHHHHHHhHhhhhcCCCCchHHHHHHHHHHHHHHHHh
Q 001464 232 LFNIVNRILDECVERKNGDAPHRVACLLRKVVPLIERRT 270 (1073)
Q Consensus 232 l~~~~~~~l~~~~~~~~~~~~~~~~~~l~kvv~e~e~ri 270 (1073)
|..+|.+-+.+.+++.- =|. .+|.-.|.|.+.-|
T Consensus 6 l~~~~~a~~~~~ld~~E--DP~---~~l~q~ird~e~~l 39 (221)
T PF04012_consen 6 LKTLVKANINELLDKAE--DPE---KMLEQAIRDMEEQL 39 (221)
T ss_pred HHHHHHHHHHHHHHhhc--CHH---HHHHHHHHHHHHHH
Confidence 45677777777666432 254 56777776665543
No 287
>PF15294 Leu_zip: Leucine zipper
Probab=70.90 E-value=81 Score=36.03 Aligned_cols=151 Identities=19% Similarity=0.219 Sum_probs=0.0
Q ss_pred hHHHhhhhhHHHhhHHHHHHHHHHHhhhhccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhcccchhHHHHH
Q 001464 274 YQNFKNQNNLFRAREEKYKSRIRVLETLTVGTTEENQVVANQLERIKTEKTNIAQKEKLEEQNALRLKKENDDRDIEIST 353 (1073)
Q Consensus 274 ~~~~~~q~~~~~~~~~~~~~~~~~le~l~~~~~ee~~~~~~~l~~l~~e~~k~eek~~~~e~~~~~l~ke~e~~~~e~~~ 353 (1073)
.+.|.....-++.-.++.+.|...++..+...-+|...+.++|+.++.+.....-+..+.-. ..++..
T Consensus 127 ~~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~~~------------~q~l~d 194 (278)
T PF15294_consen 127 SELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKGKKDLSFK------------AQDLSD 194 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccc------------ccchhh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHhHHHhhHHHH
Q 001464 354 LKQDLELAKRTHELHCLQLEEQIYETKIESQKKLQELERLLTVSKKKVEELESLSESKSQRWKRIEHSYQSFMGCQLGVI 433 (1073)
Q Consensus 354 Lk~ele~~k~~~e~~~~~le~~~~~~k~ele~~l~e~e~~l~~~~~~v~~le~~~~~~~~~~~~~~~~~~~~l~~Q~~~l 433 (1073)
|.+.+..++..+++-....+...+.. +..+..-+..+-..+.++...++-.+.+.+. ......++.++......|
T Consensus 195 LE~k~a~lK~e~ek~~~d~~~~~k~L----~e~L~~~KhelL~~QeqL~~aekeLekKfqq-T~ay~NMk~~ltkKn~Qi 269 (278)
T PF15294_consen 195 LENKMAALKSELEKALQDKESQQKAL----EETLQSCKHELLRVQEQLSLAEKELEKKFQQ-TAAYRNMKEILTKKNEQI 269 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhcchhhhcchhhHHHHhCc-cHHHHHhHHHHHhccHHH
Q ss_pred HHHHHHHH
Q 001464 434 QDLRVAFE 441 (1073)
Q Consensus 434 ~el~~~~~ 441 (1073)
++||..+.
T Consensus 270 KeLRkrl~ 277 (278)
T PF15294_consen 270 KELRKRLA 277 (278)
T ss_pred HHHHHHhc
No 288
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=70.88 E-value=1.5e+02 Score=31.44 Aligned_cols=17 Identities=41% Similarity=0.583 Sum_probs=10.4
Q ss_pred HHHHHHHHHHhHHHHHH
Q 001464 433 IQDLRVAFESTKHEVLE 449 (1073)
Q Consensus 433 l~el~~~~~~~k~ei~~ 449 (1073)
+..|+..+++.|-++.+
T Consensus 140 i~~lr~~iE~~K~~~lr 156 (177)
T PF07798_consen 140 IANLRTEIESLKWDTLR 156 (177)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45566666666666553
No 289
>PF13245 AAA_19: Part of AAA domain
Probab=70.88 E-value=1.7 Score=39.64 Aligned_cols=27 Identities=30% Similarity=0.450 Sum_probs=18.8
Q ss_pred HHHhhcCcceeEEeecccCCCCCeeeec
Q 001464 564 IRSVLDGYNVCIFAYGQTGSGKTYTMSG 591 (1073)
Q Consensus 564 V~svLdGyN~~IfAYGQTGSGKTyTM~G 591 (1073)
|..++. -+..+...|+.|||||+|+..
T Consensus 3 v~~al~-~~~~~vv~g~pGtGKT~~~~~ 29 (76)
T PF13245_consen 3 VRRALA-GSPLFVVQGPPGTGKTTTLAA 29 (76)
T ss_pred HHHHHh-hCCeEEEECCCCCCHHHHHHH
Confidence 455555 333344599999999999864
No 290
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=70.80 E-value=2e+02 Score=32.85 Aligned_cols=43 Identities=14% Similarity=0.265 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHH--hhhhccchhhHHHHHHHHHHHHHHhhhHHHHH
Q 001464 287 REEKYKSRIRVL--ETLTVGTTEENQVVANQLERIKTEKTNIAQKE 330 (1073)
Q Consensus 287 ~~~~~~~~~~~l--e~l~~~~~ee~~~~~~~l~~l~~e~~k~eek~ 330 (1073)
--++|++|+..+ |++.... ..+..+..+++.|.+|...|+.+.
T Consensus 31 ~me~~q~kL~l~~~e~l~~s~-~ql~ll~~~~k~L~aE~~qwqk~~ 75 (268)
T PF11802_consen 31 DMEECQNKLSLIGTETLTDSD-AQLSLLMMRVKCLTAELEQWQKRT 75 (268)
T ss_pred HHHHHHHHHhhcCCCCCCCcc-hhHHHHHHHHHHHHHHHHHHHhcC
Confidence 344566666555 3333222 234466677777888888888753
No 291
>KOG0517 consensus Beta-spectrin [Cytoskeleton]
Probab=70.72 E-value=4.7e+02 Score=37.24 Aligned_cols=85 Identities=19% Similarity=0.206 Sum_probs=58.3
Q ss_pred HhhhhHhhhccChhhHHH-----HHHHHHHhcCCCCCCCCccHHHHHHHchhhHHHHHHHhhhcCCCccCCCC---CCCC
Q 001464 17 AENIEALDNMAEGNQLST-----LVEWLNEMIPHIHLPFEASEEKLRACLVDGTVLCLVLNKLSPDSVEMGAN---FEPG 88 (1073)
Q Consensus 17 ~~~~~~~~~~~~~~r~~e-----~~~Wie~vlg~~~lp~~~s~edl~~~LrDGviLC~L~N~l~Pgsv~k~~~---~~~~ 88 (1073)
+..|..+|=+.....|.. --.|++..++.... -..||..-|+||+.|.+|+..|.--..||+.. -.+.
T Consensus 30 a~lFErsRIKaLadERe~vQKKTFTKWvNShL~rv~c----~I~DLy~DlrDG~~LlkLLEvlSGE~LpkPtrGRMRIH~ 105 (2473)
T KOG0517|consen 30 ARLFERSRIKALADEREAVQKKTFTKWVNSHLARVSC----RIGDLYTDLRDGIMLLKLLEVLSGERLPKPTRGRMRIHC 105 (2473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcc----hhHHHHHHHhhhHHHHHHHHHHccccCCCCCCCceeehh
Confidence 444555555544444433 34799999974443 34589999999999999999997655655432 1345
Q ss_pred cccHHHHHHHHHhCCCC
Q 001464 89 PANVKRFLAAMDDMGLP 105 (1073)
Q Consensus 89 ~eNI~~FL~ac~~~Gvp 105 (1073)
.||+..-|.+.+.-.|+
T Consensus 106 LENvdKaLqFLkeqkVh 122 (2473)
T KOG0517|consen 106 LENVDKALQFLKEQKVH 122 (2473)
T ss_pred HhhhHHHHHHHHhcccc
Confidence 79999999999764443
No 292
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=70.59 E-value=3.2e+02 Score=35.31 Aligned_cols=71 Identities=14% Similarity=0.162 Sum_probs=40.2
Q ss_pred hcccCCCCCCcchHHHHHHHHHhHhhhhc--CCCCch-HHHHHHHHHHHHHHHHhhhhhHHHhhhhhHHHhhHH
Q 001464 219 VNSSCMDNASTKSLFNIVNRILDECVERK--NGDAPH-RVACLLRKVVPLIERRTATQYQNFKNQNNLFRAREE 289 (1073)
Q Consensus 219 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~~--~~~~~~-~~~~~l~kvv~e~e~ris~q~~~~~~q~~~~~~~~~ 289 (1073)
||-....-.|+--|-.=|-.+=.+..+-| ..+.|+ ....++.|..+||++++|.-.....-|..|-.-|+|
T Consensus 421 ~~~~~~~~~~~~~Le~elekLk~eilKAk~s~~~~~~~~L~e~IeKLk~E~d~e~S~A~~~~gLk~kL~~Lr~E 494 (762)
T PLN03229 421 MKKREAVKTPVRELEGEVEKLKEQILKAKESSSKPSELALNEMIEKLKKEIDLEYTEAVIAMGLQERLENLREE 494 (762)
T ss_pred cchhccCCCCCccHHHHHHHHHHHHHhcccccCCCCChHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 44444444555555443433333333333 235555 456788899999999999765554444444444443
No 293
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=70.48 E-value=1.4 Score=41.45 Aligned_cols=19 Identities=37% Similarity=0.461 Sum_probs=16.5
Q ss_pred eeEEeecccCCCCCeeeec
Q 001464 573 VCIFAYGQTGSGKTYTMSG 591 (1073)
Q Consensus 573 ~~IfAYGQTGSGKTyTM~G 591 (1073)
..++-+|++|||||+++..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~ 21 (148)
T smart00382 3 EVILIVGPPGSGKTTLARA 21 (148)
T ss_pred CEEEEECCCCCcHHHHHHH
Confidence 4678899999999999865
No 294
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=70.43 E-value=1.5 Score=56.37 Aligned_cols=33 Identities=27% Similarity=0.447 Sum_probs=23.9
Q ss_pred hchHHHHHHhhc--CcceeEEeecccCCCCCeeee
Q 001464 558 LDTRPLIRSVLD--GYNVCIFAYGQTGSGKTYTMS 590 (1073)
Q Consensus 558 ~~~~pLV~svLd--GyN~~IfAYGQTGSGKTyTM~ 590 (1073)
..+..+|..++. |-+.|||.||++|+|||.|+-
T Consensus 765 eeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK 799 (1164)
T PTZ00112 765 KEVHGFLESGIKQSGSNQILYISGMPGTGKTATVY 799 (1164)
T ss_pred HHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHH
Confidence 334455566664 445678999999999999874
No 295
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.35 E-value=2.8e+02 Score=34.50 Aligned_cols=21 Identities=14% Similarity=0.289 Sum_probs=9.8
Q ss_pred hhHHHhhhhhHHHhhHHHHHH
Q 001464 273 QYQNFKNQNNLFRAREEKYKS 293 (1073)
Q Consensus 273 q~~~~~~q~~~~~~~~~~~~~ 293 (1073)
.+|.+++.....+-..-+|++
T Consensus 58 eyd~~R~Eldqtkeal~q~~s 78 (772)
T KOG0999|consen 58 EYDLARTELDQTKEALGQYRS 78 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444
No 296
>PF12846 AAA_10: AAA-like domain
Probab=70.33 E-value=1.4 Score=48.43 Aligned_cols=19 Identities=42% Similarity=0.574 Sum_probs=16.6
Q ss_pred ceeEEeecccCCCCCeeee
Q 001464 572 NVCIFAYGQTGSGKTYTMS 590 (1073)
Q Consensus 572 N~~IfAYGQTGSGKTyTM~ 590 (1073)
|..++..|.||||||++|.
T Consensus 1 n~h~~i~G~tGsGKT~~~~ 19 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLK 19 (304)
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 5678899999999999885
No 297
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=70.31 E-value=1.5 Score=47.34 Aligned_cols=17 Identities=47% Similarity=0.720 Sum_probs=14.6
Q ss_pred eEEeecccCCCCCeeee
Q 001464 574 CIFAYGQTGSGKTYTMS 590 (1073)
Q Consensus 574 ~IfAYGQTGSGKTyTM~ 590 (1073)
-+..+|.||||||+|+-
T Consensus 25 H~~I~G~TGsGKS~~~~ 41 (229)
T PF01935_consen 25 HIAIFGTTGSGKSNTVK 41 (229)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 45678999999999985
No 298
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=69.81 E-value=1.9 Score=48.91 Aligned_cols=44 Identities=23% Similarity=0.318 Sum_probs=27.8
Q ss_pred eeeceeeCCCCChHHHHhchHHHHHHhhcCcceeEEeecccCCCCCeeeec
Q 001464 541 FKFNKVFGPEASQEEVFLDTRPLIRSVLDGYNVCIFAYGQTGSGKTYTMSG 591 (1073)
Q Consensus 541 F~FD~VF~~~atQeeVf~~~~pLV~svLdGyN~~IfAYGQTGSGKTyTM~G 591 (1073)
-+||.+.+ |+++......++. .|-...++-||++|+|||++...
T Consensus 12 ~~~~~~~g----~~~~~~~L~~~~~---~~~~~~lll~Gp~GtGKT~la~~ 55 (337)
T PRK12402 12 ALLEDILG----QDEVVERLSRAVD---SPNLPHLLVQGPPGSGKTAAVRA 55 (337)
T ss_pred CcHHHhcC----CHHHHHHHHHHHh---CCCCceEEEECCCCCCHHHHHHH
Confidence 45777764 4445444333332 34433588899999999998743
No 299
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=69.81 E-value=2 Score=49.86 Aligned_cols=29 Identities=31% Similarity=0.487 Sum_probs=21.6
Q ss_pred HHHHhhcCcceeEEeecccCCCCCeeeec
Q 001464 563 LIRSVLDGYNVCIFAYGQTGSGKTYTMSG 591 (1073)
Q Consensus 563 LV~svLdGyN~~IfAYGQTGSGKTyTM~G 591 (1073)
.+..++.--.+.|+-.|+||||||+||..
T Consensus 113 ~l~~~~~~~~g~ili~G~tGSGKTT~l~a 141 (343)
T TIGR01420 113 VLRELAERPRGLILVTGPTGSGKSTTLAS 141 (343)
T ss_pred HHHHHHhhcCcEEEEECCCCCCHHHHHHH
Confidence 44444543357799999999999999854
No 300
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=69.33 E-value=1.5 Score=46.66 Aligned_cols=19 Identities=37% Similarity=0.567 Sum_probs=16.6
Q ss_pred ceeEEeecccCCCCCeeee
Q 001464 572 NVCIFAYGQTGSGKTYTMS 590 (1073)
Q Consensus 572 N~~IfAYGQTGSGKTyTM~ 590 (1073)
++.|+-.|+||||||+|+.
T Consensus 1 ~GlilI~GptGSGKTTll~ 19 (198)
T cd01131 1 RGLVLVTGPTGSGKSTTLA 19 (198)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 3578899999999999985
No 301
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=68.73 E-value=75 Score=40.82 Aligned_cols=21 Identities=19% Similarity=0.166 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001464 385 KKLQELERLLTVSKKKVEELE 405 (1073)
Q Consensus 385 ~~l~e~e~~l~~~~~~v~~le 405 (1073)
..+..|+.+.+.++.+++.|+
T Consensus 566 ~~l~~L~~En~~L~~~l~~le 586 (722)
T PF05557_consen 566 STLEALQAENEDLLARLRSLE 586 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 334444444444444444443
No 302
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=68.58 E-value=3.4e+02 Score=34.74 Aligned_cols=17 Identities=29% Similarity=0.309 Sum_probs=12.3
Q ss_pred CCCcchHHHHHHHHHhH
Q 001464 226 NASTKSLFNIVNRILDE 242 (1073)
Q Consensus 226 ~~~~~~l~~~~~~~l~~ 242 (1073)
|...+|+.+.+..-|.-
T Consensus 57 n~~~~s~~~~~~~~l~~ 73 (716)
T KOG4593|consen 57 NITSKSLLMQLEDELMQ 73 (716)
T ss_pred cchhHHHHHHHHHHHHH
Confidence 56777888887776654
No 303
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=68.32 E-value=1.7 Score=52.83 Aligned_cols=58 Identities=28% Similarity=0.322 Sum_probs=0.0
Q ss_pred hcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001464 342 KENDDRDIEISTLKQDLELAKRTHELHCLQLEEQIYETKIESQKKLQELERLLTVSKKKVEE 403 (1073)
Q Consensus 342 ke~e~~~~e~~~Lk~ele~~k~~~e~~~~~le~~~~~~k~ele~~l~e~e~~l~~~~~~v~~ 403 (1073)
++.+.++.||..||+.|....++.|+...+|..+ +.+..+-+.++...|++..++++.
T Consensus 369 ~~~e~YEqEI~~LkErL~~S~rkLeEyErrLl~Q----Eqqt~Kll~qyq~RLedSE~RLr~ 426 (495)
T PF12004_consen 369 KEVEKYEQEIQSLKERLRMSHRKLEEYERRLLSQ----EQQTQKLLLQYQARLEDSEERLRR 426 (495)
T ss_dssp --------------------------------------------------------------
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----HHHHHHHHHHHHHhhhhhHHHHHH
Confidence 3444588899999999999888766655555443 233455566666666666655554
No 304
>PF06294 DUF1042: Domain of Unknown Function (DUF1042); InterPro: IPR010441 This is a family of proteins of unknown function.; PDB: 2EE7_A.
Probab=68.26 E-value=4.1 Score=42.51 Aligned_cols=86 Identities=21% Similarity=0.419 Sum_probs=51.3
Q ss_pred HHHHHHHhcCCCCCCCCccHHHHHHHchhhHHHHHHHhhhcCCCccCCCCC------CCCcccHHHH-HHHHHhCCCCCC
Q 001464 35 LVEWLNEMIPHIHLPFEASEEKLRACLVDGTVLCLVLNKLSPDSVEMGANF------EPGPANVKRF-LAAMDDMGLPRF 107 (1073)
Q Consensus 35 ~~~Wie~vlg~~~lp~~~s~edl~~~LrDGviLC~L~N~l~Pgsv~k~~~~------~~~~eNI~~F-L~ac~~~Gvp~F 107 (1073)
+..||.. ++ ...+.. .++..+.||++++.++.+..|..|. ..+| ...+.|-..| .+.+..+|++ |
T Consensus 1 l~~WL~~-l~-ls~~~~----n~~rDfsdG~lvAEIl~~y~p~~vd-lh~y~~~~s~~~Kl~NW~~Ln~kvl~kl~~~-l 72 (158)
T PF06294_consen 1 LLKWLQS-LD-LSRPPK----NIRRDFSDGYLVAEILSRYYPKLVD-LHNYSNGNSVAQKLNNWETLNEKVLKKLGIK-L 72 (158)
T ss_dssp HHHHHHH-S---S--SS-----HHHHHTTSHHHHHHHHHH-TTT----SS----SSHHHHHHHHHHHHHHTTGGGT----
T ss_pred ChHHHhc-CC-CCCCCC----chHHHcccccHHHHHHHHHCCCCcc-ccccCCCCCHHHHHHHHHHHHHHHHHHcCCC-C
Confidence 4679999 55 444333 5777888999999999999999982 2222 2234588888 7788889886 5
Q ss_pred cccccc------CCCchhHHHHHHHHH
Q 001464 108 ELSDLE------QGNMAPVLQCLRSLR 128 (1073)
Q Consensus 108 e~~DLE------~~n~~~Vv~cL~aL~ 128 (1073)
...+++ .|-...++.+|+..-
T Consensus 73 ~~~~i~~i~~~~~Gaae~lL~~L~~~l 99 (158)
T PF06294_consen 73 DKEDIEGIINCKPGAAESLLYQLYTKL 99 (158)
T ss_dssp -HHHHHHHHTT-TTTTHHHHHHHHHHH
T ss_pred CHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 555442 344666766666554
No 305
>cd07658 F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Nitric Oxide Synthase TRaffic INducer (NOSTRIN). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Nitric Oxide Synthase TRaffic INducer (NOSTRIN) is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). NOSTRIN facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of NOSTRIN may be correlated to preeclampsia. NOSTRIN contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. The F-BAR domain of NOSTRIN is necessary and sufficient fo
Probab=68.05 E-value=2e+02 Score=31.93 Aligned_cols=38 Identities=13% Similarity=-0.004 Sum_probs=18.7
Q ss_pred HHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001464 330 EKLEEQNALRLKKENDDRDIEISTLKQDLELAKRTHELHCLQLEE 374 (1073)
Q Consensus 330 ~~~~e~~~~~l~ke~e~~~~e~~~Lk~ele~~k~~~e~~~~~le~ 374 (1073)
++..+.++.++.+.+ ..+..++..+++.|...|.+.+.
T Consensus 104 rK~~~~~~~k~qk~~-------~~~~~~~~k~kk~y~~~~kE~e~ 141 (239)
T cd07658 104 RKPVENEVDKAAKLL-------TDWRSEQIKVKKKLHGLARENEK 141 (239)
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455444443 33334444566666666655543
No 306
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=67.84 E-value=2.3 Score=50.05 Aligned_cols=28 Identities=32% Similarity=0.358 Sum_probs=20.4
Q ss_pred HHHHhhcCcceeEEeecccCCCCCeeeec
Q 001464 563 LIRSVLDGYNVCIFAYGQTGSGKTYTMSG 591 (1073)
Q Consensus 563 LV~svLdGyN~~IfAYGQTGSGKTyTM~G 591 (1073)
+++.++. .++.|+..|+||||||+||..
T Consensus 141 ~~~~l~~-~~GlilI~G~TGSGKTT~l~a 168 (372)
T TIGR02525 141 LFNSLLP-AAGLGLICGETGSGKSTLAAS 168 (372)
T ss_pred HHHHHHh-cCCEEEEECCCCCCHHHHHHH
Confidence 4444443 455788899999999999853
No 307
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=66.71 E-value=2.6 Score=49.45 Aligned_cols=21 Identities=33% Similarity=0.515 Sum_probs=18.3
Q ss_pred cceeEEeecccCCCCCeeeec
Q 001464 571 YNVCIFAYGQTGSGKTYTMSG 591 (1073)
Q Consensus 571 yN~~IfAYGQTGSGKTyTM~G 591 (1073)
-.+.|+..|+||||||.||..
T Consensus 133 ~~glilI~GpTGSGKTTtL~a 153 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLLAA 153 (358)
T ss_pred cCCEEEEECCCCCCHHHHHHH
Confidence 467899999999999999854
No 308
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=66.71 E-value=2e+02 Score=31.44 Aligned_cols=48 Identities=27% Similarity=0.380 Sum_probs=38.9
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001464 345 DDRDIEISTLKQDLELAKRTHELHCLQLEEQIYETKIESQKKLQELER 392 (1073)
Q Consensus 345 e~~~~e~~~Lk~ele~~k~~~e~~~~~le~~~~~~k~ele~~l~e~e~ 392 (1073)
+.-+.||.+|+.++..++..|.....+++.+.-..++.|++++.+..-
T Consensus 81 ~~qe~eI~~Le~e~~~~~~e~~~~l~~~~~qfl~EK~~LEke~~e~~i 128 (206)
T PF14988_consen 81 EQQEREIQTLEEELEKMRAEHAEKLQEAESQFLQEKARLEKEASELKI 128 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 345678999999999999999998899888888888888887755543
No 309
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=66.24 E-value=2.6e+02 Score=32.49 Aligned_cols=121 Identities=21% Similarity=0.260 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHhhhhccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHH
Q 001464 288 EEKYKSRIRVLETLTVGTTEENQVVANQLERIKTEKTNIAQKEKLEEQNALRLKKENDDRDIEISTLKQDLELAKRTHEL 367 (1073)
Q Consensus 288 ~~~~~~~~~~le~l~~~~~ee~~~~~~~l~~l~~e~~k~eek~~~~e~~~~~l~ke~e~~~~e~~~Lk~ele~~k~~~e~ 367 (1073)
.+.|..|-.-++.+.....-|++-+...+++.......-.++.+.+.+-+..=...+......-..|+.+|..--..|+.
T Consensus 148 ~eQye~rE~~~~~~~k~keLE~Ql~~AKl~q~~~~~~~e~~k~~~~~~~~l~~~~~~~~~~~~E~~Lr~QL~~Y~~Kf~e 227 (309)
T PF09728_consen 148 IEQYELREEHFEKLLKQKELEVQLAEAKLEQQQEEAEQEKEKAKQEKEILLEEAAQVQTLKETEKELREQLNLYSEKFEE 227 (309)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555555555555553322222222222111100000001112222223455555443333433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Q 001464 368 HCLQLEEQIYETKIESQKKLQELERLLTVSKKKVEELESLSESKSQRWK 416 (1073)
Q Consensus 368 ~~~~le~~~~~~k~ele~~l~e~e~~l~~~~~~v~~le~~~~~~~~~~~ 416 (1073)
...-|. +-+.-...++.+++.+.+.++.||.-...+...|.
T Consensus 228 fq~tL~--------kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e 268 (309)
T PF09728_consen 228 FQDTLN--------KSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWE 268 (309)
T ss_pred HHHHHH--------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332222 22444566777778888888888776655555553
No 310
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=66.24 E-value=4.5e+02 Score=35.30 Aligned_cols=30 Identities=17% Similarity=0.160 Sum_probs=16.4
Q ss_pred HHHHHHH-HhCCCCC-----Cccccc-cCCCchhHHH
Q 001464 93 KRFLAAM-DDMGLPR-----FELSDL-EQGNMAPVLQ 122 (1073)
Q Consensus 93 ~~FL~ac-~~~Gvp~-----Fe~~DL-E~~n~~~Vv~ 122 (1073)
+|+..|+ =.||+.. =...|| .+.++..++.
T Consensus 39 SNlMDAISFVLGekss~LR~~~lkdLIyg~~i~~~v~ 75 (1141)
T KOG0018|consen 39 SNLMDAISFVLGEKSSHLRVSHLKDLIYGKPIRKPVT 75 (1141)
T ss_pred HHHHHHHHHHhcCCCcccccchHHHHhcCCccCCchh
Confidence 3444444 2466655 445677 6556665555
No 311
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=66.21 E-value=4.5e+02 Score=35.30 Aligned_cols=29 Identities=7% Similarity=0.371 Sum_probs=15.0
Q ss_pred HHHHHHHHHhhhhhHHHhhhhhHHHhhHH
Q 001464 261 KVVPLIERRTATQYQNFKNQNNLFRAREE 289 (1073)
Q Consensus 261 kvv~e~e~ris~q~~~~~~q~~~~~~~~~ 289 (1073)
+-+..+++.|+-+-..+..+-.++++.++
T Consensus 269 re~~~~Dk~i~~ke~~l~erp~li~~ke~ 297 (1141)
T KOG0018|consen 269 RELQKVDKKISEKEEKLAERPELIKVKEN 297 (1141)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHhhcchh
Confidence 33445566666665555554445544443
No 312
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal
Probab=65.93 E-value=2.1e+02 Score=31.27 Aligned_cols=120 Identities=21% Similarity=0.358 Sum_probs=0.0
Q ss_pred HHHHHHHHH---hhhhhHHHhhhhhHHHhhHHHHHHHHHHHhhhhccchhhHHHHHHHHHHHH-------------HHhh
Q 001464 261 KVVPLIERR---TATQYQNFKNQNNLFRAREEKYKSRIRVLETLTVGTTEENQVVANQLERIK-------------TEKT 324 (1073)
Q Consensus 261 kvv~e~e~r---is~q~~~~~~q~~~~~~~~~~~~~~~~~le~l~~~~~ee~~~~~~~l~~l~-------------~e~~ 324 (1073)
.++.++.+. |+.-...+...+..+...+..|+++-..|+. .+.++|.+.+ .+.-
T Consensus 9 ~lld~l~~Nnr~L~~L~~dl~~~~~~~~~~e~~~~~KY~~lR~----------ElI~ELkqsKklydnYYkL~~KY~~LK 78 (196)
T PF15272_consen 9 ELLDQLDQNNRALSDLNQDLRERDERYELQETSYKEKYQQLRQ----------ELINELKQSKKLYDNYYKLYSKYQELK 78 (196)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHHHHHHHHHHHHHHhhhcc----cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001464 325 NIAQKEKLEEQNALRLKKEN----DDRDIEISTLKQDLELAKRTHELHCLQLEEQIYETKIESQKKLQELERLL 394 (1073)
Q Consensus 325 k~eek~~~~e~~~~~l~ke~----e~~~~e~~~Lk~ele~~k~~~e~~~~~le~~~~~~k~ele~~l~e~e~~l 394 (1073)
+.-.+.......+..|.++. ...+.+|..+.++| -..+.++.+++.+.+.-+...|.+|.|++..|
T Consensus 79 ~~~~~~~~l~~~i~~le~~lvd~~~~kd~~i~~~~~~l----~~~~~r~~el~~~r~~e~~~YesRI~dLE~~L 148 (196)
T PF15272_consen 79 KSSKQSEDLQSRISNLEKQLVDQMIEKDREIRTLQDEL----LSLELRNKELQNERERERIAYESRIADLERQL 148 (196)
T ss_pred HHhHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH----HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
No 313
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=65.88 E-value=2.2 Score=47.24 Aligned_cols=29 Identities=38% Similarity=0.550 Sum_probs=19.8
Q ss_pred HHHHHHhhcCcceeEEeecccCCCCCeeee
Q 001464 561 RPLIRSVLDGYNVCIFAYGQTGSGKTYTMS 590 (1073)
Q Consensus 561 ~pLV~svLdGyN~~IfAYGQTGSGKTyTM~ 590 (1073)
..++..++.+ .+.|+..|.||||||.+|.
T Consensus 117 ~~~l~~~v~~-~~~ili~G~tGSGKTT~l~ 145 (270)
T PF00437_consen 117 AEFLRSAVRG-RGNILISGPTGSGKTTLLN 145 (270)
T ss_dssp HHHHHHCHHT-TEEEEEEESTTSSHHHHHH
T ss_pred HHHHhhcccc-ceEEEEECCCccccchHHH
Confidence 3344443333 4567788999999999984
No 314
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=65.65 E-value=2.9 Score=46.84 Aligned_cols=30 Identities=37% Similarity=0.504 Sum_probs=23.2
Q ss_pred HHHHHhhcCcceeEEeecccCCCCCeeeec
Q 001464 562 PLIRSVLDGYNVCIFAYGQTGSGKTYTMSG 591 (1073)
Q Consensus 562 pLV~svLdGyN~~IfAYGQTGSGKTyTM~G 591 (1073)
..+..++..-.+.|+-.|+||||||.||..
T Consensus 70 ~~l~~~~~~~~GlilisG~tGSGKTT~l~a 99 (264)
T cd01129 70 EIFRKLLEKPHGIILVTGPTGSGKTTTLYS 99 (264)
T ss_pred HHHHHHHhcCCCEEEEECCCCCcHHHHHHH
Confidence 345666665566789999999999999853
No 315
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=65.61 E-value=63 Score=37.44 Aligned_cols=53 Identities=21% Similarity=0.347 Sum_probs=30.0
Q ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHH
Q 001464 307 EENQVVANQLERIKTEKTNIAQKEKLEEQNALRLKKENDDRDIEISTLKQDLE 359 (1073)
Q Consensus 307 ee~~~~~~~l~~l~~e~~k~eek~~~~e~~~~~l~ke~e~~~~e~~~Lk~ele 359 (1073)
++...+..+++.++.|.....++.+.+|++...+.++......|...|+++-+
T Consensus 43 ~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~ 95 (314)
T PF04111_consen 43 EDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEE 95 (314)
T ss_dssp H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555666666555555555555566666666666666666666655433
No 316
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=65.54 E-value=3.6 Score=45.12 Aligned_cols=25 Identities=28% Similarity=0.321 Sum_probs=18.6
Q ss_pred HhhcCcceeEEeecccCCCCCeeee
Q 001464 566 SVLDGYNVCIFAYGQTGSGKTYTMS 590 (1073)
Q Consensus 566 svLdGyN~~IfAYGQTGSGKTyTM~ 590 (1073)
..+......++-+|++|+|||+++.
T Consensus 37 ~~~~~~~~~~~l~G~~G~GKTtl~~ 61 (269)
T TIGR03015 37 YGLSQREGFILITGEVGAGKTTLIR 61 (269)
T ss_pred HHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 3344445578889999999998764
No 317
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=65.38 E-value=3.1e+02 Score=33.06 Aligned_cols=33 Identities=15% Similarity=0.225 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHhhHHHHHhhhhhH
Q 001464 433 IQDLRVAFESTKHEVLETKKNYSKEFDCLGLNL 465 (1073)
Q Consensus 433 l~el~~~~~~~k~ei~~~~~~~~~e~~~l~~~~ 465 (1073)
++-|+.++..+|..+...++.|.+.+.++...-
T Consensus 255 i~~l~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee 287 (552)
T KOG2129|consen 255 IDKLQAEVERLRTYLSRAQKSYQEKLMQYRAEE 287 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566778888888888888888877766554433
No 318
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=65.27 E-value=4.7e+02 Score=35.15 Aligned_cols=39 Identities=26% Similarity=0.446 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHHHHhhhcccchh-HHHHHHHHHHHHHHH
Q 001464 325 NIAQKEKLEEQNALRLKKENDDRD-IEISTLKQDLELAKR 363 (1073)
Q Consensus 325 k~eek~~~~e~~~~~l~ke~e~~~-~e~~~Lk~ele~~k~ 363 (1073)
.++|+.+++.++-.|+....+..+ ..|..|.++|+.+..
T Consensus 1135 nlqqElklLRnEK~Rmh~~~dkVDFSDIEkLE~qLq~~~~ 1174 (1439)
T PF12252_consen 1135 NLQQELKLLRNEKIRMHSGTDKVDFSDIEKLEKQLQVIHT 1174 (1439)
T ss_pred HHHHHHHHHHhHHHhhccCCCcccHHHHHHHHHHHHHhhh
Confidence 355666666666666666655543 345677777766553
No 319
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=65.04 E-value=2.8e+02 Score=32.47 Aligned_cols=39 Identities=15% Similarity=0.230 Sum_probs=20.2
Q ss_pred hccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Q 001464 302 TVGTTEENQVVANQLERIKTEKTNIAQKEKLEEQNALRL 340 (1073)
Q Consensus 302 ~~~~~ee~~~~~~~l~~l~~e~~k~eek~~~~e~~~~~l 340 (1073)
-..+++++..+..+++.|+.....++..-+++.+.+.+.
T Consensus 74 L~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~ 112 (319)
T PF09789_consen 74 LSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQ 112 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhh
Confidence 344555555555555555555555555555544444433
No 320
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=65.02 E-value=1.6e+02 Score=33.73 Aligned_cols=20 Identities=10% Similarity=0.248 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHhHHHHHHHH
Q 001464 432 VIQDLRVAFESTKHEVLETK 451 (1073)
Q Consensus 432 ~l~el~~~~~~~k~ei~~~~ 451 (1073)
+|+|.|.+++++|+-|..++
T Consensus 118 ALKEARkEIkQLkQvieTmr 137 (305)
T PF15290_consen 118 ALKEARKEIKQLKQVIETMR 137 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666555544
No 321
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=65.01 E-value=1.4e+02 Score=30.41 Aligned_cols=20 Identities=30% Similarity=0.297 Sum_probs=8.7
Q ss_pred hhhcccchhHHHHHHHHHHH
Q 001464 340 LKKENDDRDIEISTLKQDLE 359 (1073)
Q Consensus 340 l~ke~e~~~~e~~~Lk~ele 359 (1073)
|.+|.+..+.|-.+|++=|.
T Consensus 39 L~~ELDsL~~EkvhLeeiln 58 (134)
T PF15233_consen 39 LQRELDSLNGEKVHLEEILN 58 (134)
T ss_pred HHHHHHHHhhhHHHHHHHHH
Confidence 34444444444444444443
No 322
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=64.48 E-value=2.6e+02 Score=33.93 Aligned_cols=17 Identities=18% Similarity=-0.021 Sum_probs=10.7
Q ss_pred HHHHhhcCcceeEEeec
Q 001464 563 LIRSVLDGYNVCIFAYG 579 (1073)
Q Consensus 563 LV~svLdGyN~~IfAYG 579 (1073)
-|..+-.|-.+.|...+
T Consensus 368 di~~v~~Gq~V~v~~~a 384 (457)
T TIGR01000 368 DISGIKVGQKVRFKLTQ 384 (457)
T ss_pred HHhhcCCCCeEEEEEec
Confidence 34555668877776554
No 323
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=64.22 E-value=2.8 Score=46.74 Aligned_cols=130 Identities=18% Similarity=0.290 Sum_probs=71.0
Q ss_pred eeeceeeCCCCChHHHHhchHHHHHHhhcCccee-EEeecccCCCCCeeeecCCCCCCCccchhHHHHHHHHHHHHhccC
Q 001464 541 FKFNKVFGPEASQEEVFLDTRPLIRSVLDGYNVC-IFAYGQTGSGKTYTMSGPCISSTEDWGVNYRALNDLFEISESRKN 619 (1073)
Q Consensus 541 F~FD~VF~~~atQeeVf~~~~pLV~svLdGyN~~-IfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~~~~ 619 (1073)
..+|...+-+...+.+...+ ..++.|..+- ++-||..|+|||.++-. |+......
T Consensus 24 ~~l~~L~Gie~Qk~~l~~Nt----~~Fl~G~pannvLL~G~rGtGKSSlVka------------------ll~~y~~~-- 79 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIENT----EQFLQGLPANNVLLWGARGTGKSSLVKA------------------LLNEYADQ-- 79 (249)
T ss_pred CCHHHhcCHHHHHHHHHHHH----HHHHcCCCCcceEEecCCCCCHHHHHHH------------------HHHHHhhc--
Confidence 45666666666555555555 4466666432 56699999999887653 22211111
Q ss_pred CceEEEEEEEEEEecceeeeccCCCCCCcccccccccCCCceecCCcEEEEe-cCHHHHHHHHHhhhcccccccCCCcCC
Q 001464 620 SILYEVGVQMVEIYNEQVRDLLSSDGPQRRLGIWNATLPNGLAVPEASMYSV-QSTADVLELMNIGLMNRAVCSTALNER 698 (1073)
Q Consensus 620 ~~~~~V~vS~lEIYnE~V~DLL~~~~~~~~l~i~~~~~~g~~vv~~~~~~vv-ss~eev~~lL~~G~~nR~~~sT~~N~~ 698 (1073)
.+-.+||..+.+.||-.--. .+...+..-.++++.++...- .....+..+|+-|...| .....+...
T Consensus 80 ------GLRlIev~k~~L~~l~~l~~-----~l~~~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~-P~NvliyAT 147 (249)
T PF05673_consen 80 ------GLRLIEVSKEDLGDLPELLD-----LLRDRPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEAR-PDNVLIYAT 147 (249)
T ss_pred ------CceEEEECHHHhccHHHHHH-----HHhcCCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccC-CCcEEEEEe
Confidence 16688998888777642000 000011111233344332221 22355666776665544 455556777
Q ss_pred CCCCccEE
Q 001464 699 SSRSHSIL 706 (1073)
Q Consensus 699 SSRSH~If 706 (1073)
|.|-|.|=
T Consensus 148 SNRRHLv~ 155 (249)
T PF05673_consen 148 SNRRHLVP 155 (249)
T ss_pred cchhhccc
Confidence 88888764
No 324
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=64.19 E-value=3 Score=44.50 Aligned_cols=29 Identities=24% Similarity=0.385 Sum_probs=21.9
Q ss_pred HHHHHhhcCcceeEEeecccCCCCCeeee
Q 001464 562 PLIRSVLDGYNVCIFAYGQTGSGKTYTMS 590 (1073)
Q Consensus 562 pLV~svLdGyN~~IfAYGQTGSGKTyTM~ 590 (1073)
..|+.++...+-.++..|+.|+||||+|.
T Consensus 8 ~a~~~~l~~~~~~~~l~G~aGtGKT~~l~ 36 (196)
T PF13604_consen 8 EAVRAILTSGDRVSVLQGPAGTGKTTLLK 36 (196)
T ss_dssp HHHHHHHHCTCSEEEEEESTTSTHHHHHH
T ss_pred HHHHHHHhcCCeEEEEEECCCCCHHHHHH
Confidence 45666776655556679999999999874
No 325
>PRK11281 hypothetical protein; Provisional
Probab=64.11 E-value=5.2e+02 Score=35.29 Aligned_cols=13 Identities=23% Similarity=0.278 Sum_probs=7.6
Q ss_pred HHHHHHhhcCcce
Q 001464 561 RPLIRSVLDGYNV 573 (1073)
Q Consensus 561 ~pLV~svLdGyN~ 573 (1073)
+.+++.+..++|.
T Consensus 413 ~~LL~~l~~~~~~ 425 (1113)
T PRK11281 413 RELLDQLNKQLNN 425 (1113)
T ss_pred HHHHHHHHHHHHH
Confidence 4566666666554
No 326
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=63.82 E-value=3.2e+02 Score=36.06 Aligned_cols=38 Identities=29% Similarity=0.287 Sum_probs=24.2
Q ss_pred hHHHHhchHHHHHHhhcCc------ceeEEeecccCCCCCeeee
Q 001464 553 QEEVFLDTRPLIRSVLDGY------NVCIFAYGQTGSGKTYTMS 590 (1073)
Q Consensus 553 QeeVf~~~~pLV~svLdGy------N~~IfAYGQTGSGKTyTM~ 590 (1073)
|...-..+...|..+..|. .+.++-+|+||+|||++..
T Consensus 570 Q~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~ 613 (852)
T TIGR03346 570 QDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAK 613 (852)
T ss_pred ChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHH
Confidence 3444444444455555553 3567789999999998753
No 327
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=63.30 E-value=4.3e+02 Score=34.06 Aligned_cols=26 Identities=12% Similarity=0.155 Sum_probs=13.4
Q ss_pred HHHHhhhcccchhHHHHHHHHHHHHH
Q 001464 336 NALRLKKENDDRDIEISTLKQDLELA 361 (1073)
Q Consensus 336 ~~~~l~ke~e~~~~e~~~Lk~ele~~ 361 (1073)
.-..||.+....+.+...|++++..+
T Consensus 483 ~nfklm~e~~~~~q~~k~L~~ek~~l 508 (698)
T KOG0978|consen 483 KNFKLMSERIKANQKHKLLREEKSKL 508 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555555555554443
No 328
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=63.22 E-value=2.9e+02 Score=32.11 Aligned_cols=9 Identities=44% Similarity=0.741 Sum_probs=4.1
Q ss_pred Hhhhhhhhh
Q 001464 481 ENRRLYNEV 489 (1073)
Q Consensus 481 erRkL~N~v 489 (1073)
++|.|--.+
T Consensus 193 eKr~Lq~~l 201 (310)
T PF09755_consen 193 EKRRLQEKL 201 (310)
T ss_pred HHHHHHHHH
Confidence 445544443
No 329
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=63.05 E-value=2.5 Score=44.53 Aligned_cols=29 Identities=34% Similarity=0.464 Sum_probs=20.7
Q ss_pred HHHHHhhcCcceeEEeecccCCCCCeeee
Q 001464 562 PLIRSVLDGYNVCIFAYGQTGSGKTYTMS 590 (1073)
Q Consensus 562 pLV~svLdGyN~~IfAYGQTGSGKTyTM~ 590 (1073)
.+.+.+-.|.+.+|+-||+.|+|||+.|.
T Consensus 10 ~l~~~l~~~~~~~~~l~G~rg~GKTsLl~ 38 (234)
T PF01637_consen 10 KLKELLESGPSQHILLYGPRGSGKTSLLK 38 (234)
T ss_dssp HHHHCHHH--SSEEEEEESTTSSHHHHHH
T ss_pred HHHHHHHhhcCcEEEEEcCCcCCHHHHHH
Confidence 34343445668899999999999999874
No 330
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=62.98 E-value=2.3e+02 Score=34.14 Aligned_cols=25 Identities=12% Similarity=0.182 Sum_probs=12.5
Q ss_pred hHHhHHHhhHHHHHHHHHHHHHhHH
Q 001464 421 SYQSFMGCQLGVIQDLRVAFESTKH 445 (1073)
Q Consensus 421 ~~~~~l~~Q~~~l~el~~~~~~~k~ 445 (1073)
.+..+++.++.++..|+..+..+..
T Consensus 266 qlNd~~elHq~Ei~~LKqeLa~~EE 290 (395)
T PF10267_consen 266 QLNDLTELHQNEIYNLKQELASMEE 290 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3444455555555555555444433
No 331
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=62.92 E-value=2.1 Score=43.75 Aligned_cols=28 Identities=29% Similarity=0.455 Sum_probs=15.1
Q ss_pred HHHHHhhcCcceeEEeecccCCCCCeee
Q 001464 562 PLIRSVLDGYNVCIFAYGQTGSGKTYTM 589 (1073)
Q Consensus 562 pLV~svLdGyN~~IfAYGQTGSGKTyTM 589 (1073)
.++.....|-.-+|+-+|.+|+|||+.+
T Consensus 14 ~~l~~~~~~~~~~~ll~G~~G~GKT~ll 41 (185)
T PF13191_consen 14 DLLDAAQSGSPRNLLLTGESGSGKTSLL 41 (185)
T ss_dssp HTTGGTSS-----EEE-B-TTSSHHHHH
T ss_pred HHHHHHHcCCCcEEEEECCCCCCHHHHH
Confidence 3333233566778999999999999875
No 332
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=62.59 E-value=2.4e+02 Score=30.91 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=11.8
Q ss_pred cccchhHHHHHHHHHHHHHHHH
Q 001464 343 ENDDRDIEISTLKQDLELAKRT 364 (1073)
Q Consensus 343 e~e~~~~e~~~Lk~ele~~k~~ 364 (1073)
|.....-||-+||.+|..++..
T Consensus 25 E~~~K~~Eiv~Lr~ql~e~~~~ 46 (202)
T PF06818_consen 25 EVNQKDSEIVSLRAQLRELRAE 46 (202)
T ss_pred HHHHHHhHHHHHHHHHHHHHHH
Confidence 3334455666666666555543
No 333
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=62.39 E-value=2.4 Score=45.51 Aligned_cols=18 Identities=44% Similarity=0.543 Sum_probs=15.5
Q ss_pred eEEeecccCCCCCeeeec
Q 001464 574 CIFAYGQTGSGKTYTMSG 591 (1073)
Q Consensus 574 ~IfAYGQTGSGKTyTM~G 591 (1073)
.|+-.|+||+|||.|+.-
T Consensus 3 vi~lvGptGvGKTTt~aK 20 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAK 20 (196)
T ss_dssp EEEEEESTTSSHHHHHHH
T ss_pred EEEEECCCCCchHhHHHH
Confidence 578899999999999753
No 334
>KOG1854 consensus Mitochondrial inner membrane protein (mitofilin) [Cell wall/membrane/envelope biogenesis]
Probab=61.82 E-value=4.3e+02 Score=33.56 Aligned_cols=24 Identities=21% Similarity=0.342 Sum_probs=19.0
Q ss_pred hhhhhhhhhccCCEEEE---eecCCCC
Q 001464 483 RRLYNEVQDLKGNIRVY---CRIRPFL 506 (1073)
Q Consensus 483 RkL~N~vqeLKGnIRV~---~RVRP~l 506 (1073)
..|+--.+-++|+++-- -|.+|+.
T Consensus 471 ~q~w~ac~nlk~s~~~g~~e~r~~pLg 497 (657)
T KOG1854|consen 471 KQLWLACSNLKDSLNKGHYEMRRHPLG 497 (657)
T ss_pred HHHHHHHHHHHHhhhccccccccCchh
Confidence 36788888899988887 7888864
No 335
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.75 E-value=4.8e+02 Score=34.09 Aligned_cols=19 Identities=11% Similarity=-0.036 Sum_probs=9.0
Q ss_pred CchhHHHHHHHHHhhhhcc
Q 001464 116 NMAPVLQCLRSLRASFSFC 134 (1073)
Q Consensus 116 n~~~Vv~cL~aL~~~~~~k 134 (1073)
.+.-=+-|++.|++|+-..
T Consensus 383 ~~~lRcAv~ycf~s~l~dN 401 (970)
T KOG0946|consen 383 PFSLRCAVLYCFRSYLYDN 401 (970)
T ss_pred CchHHHHHHHHHHHHHhcc
Confidence 3333344555555555443
No 336
>PF13479 AAA_24: AAA domain
Probab=61.72 E-value=3.2 Score=44.75 Aligned_cols=20 Identities=40% Similarity=0.627 Sum_probs=16.9
Q ss_pred ceeEEeecccCCCCCeeeec
Q 001464 572 NVCIFAYGQTGSGKTYTMSG 591 (1073)
Q Consensus 572 N~~IfAYGQTGSGKTyTM~G 591 (1073)
+..|+.||++|+|||++...
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~ 22 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAAS 22 (213)
T ss_pred ceEEEEECCCCCCHHHHHHh
Confidence 46788999999999998754
No 337
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=61.56 E-value=3.7e+02 Score=32.73 Aligned_cols=29 Identities=17% Similarity=0.141 Sum_probs=20.5
Q ss_pred HHHHHHhhhhhHHHhhhhhHHHhhHHHHH
Q 001464 264 PLIERRTATQYQNFKNQNNLFRAREEKYK 292 (1073)
Q Consensus 264 ~e~e~ris~q~~~~~~q~~~~~~~~~~~~ 292 (1073)
++.+.-++.|-+...+.++.|++|.-+..
T Consensus 216 ~la~~~~~~~~e~~i~~~~~f~~r~~~~E 244 (554)
T KOG4677|consen 216 QLAEEAVSMHDENVITAVLIFLKRTLSKE 244 (554)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHhhHH
Confidence 45566677777777888888877765543
No 338
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=61.54 E-value=2.8e+02 Score=31.32 Aligned_cols=9 Identities=22% Similarity=0.538 Sum_probs=4.1
Q ss_pred HHHHHHHHH
Q 001464 311 VVANQLERI 319 (1073)
Q Consensus 311 ~~~~~l~~l 319 (1073)
+++++|+++
T Consensus 49 elesqL~q~ 57 (333)
T KOG1853|consen 49 ELESQLDQL 57 (333)
T ss_pred HHHHHHHHH
Confidence 444444443
No 339
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=61.40 E-value=2.7e+02 Score=33.70 Aligned_cols=21 Identities=24% Similarity=0.502 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001464 350 EISTLKQDLELAKRTHELHCL 370 (1073)
Q Consensus 350 e~~~Lk~ele~~k~~~e~~~~ 370 (1073)
|+..|+.+|..+|+.|-....
T Consensus 156 el~~lrrdLavlRQ~~~~~~~ 176 (426)
T smart00806 156 ELKSLQRELAVLRQTHNSFFT 176 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444555554444444333
No 340
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=61.25 E-value=2e+02 Score=29.45 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=11.0
Q ss_pred HHHhhhcccchhHHHHHHHHHHHHHH
Q 001464 337 ALRLKKENDDRDIEISTLKQDLELAK 362 (1073)
Q Consensus 337 ~~~l~ke~e~~~~e~~~Lk~ele~~k 362 (1073)
+.++..+.+.....+..|+.+++.+.
T Consensus 61 ~~~l~~d~~~l~~~~~rL~~~~~~~e 86 (151)
T PF11559_consen 61 LRRLRSDIERLQNDVERLKEQLEELE 86 (151)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444333
No 341
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=61.11 E-value=3.9 Score=47.20 Aligned_cols=29 Identities=34% Similarity=0.450 Sum_probs=20.6
Q ss_pred HHHHHHhhcCcceeEEeecccCCCCCeeee
Q 001464 561 RPLIRSVLDGYNVCIFAYGQTGSGKTYTMS 590 (1073)
Q Consensus 561 ~pLV~svLdGyN~~IfAYGQTGSGKTyTM~ 590 (1073)
..++..++.+ ...|+..|.||||||++|.
T Consensus 138 ~~~L~~~v~~-~~~ilI~G~tGSGKTTll~ 166 (319)
T PRK13894 138 REAIIAAVRA-HRNILVIGGTGSGKTTLVN 166 (319)
T ss_pred HHHHHHHHHc-CCeEEEECCCCCCHHHHHH
Confidence 3456666665 3556677999999997764
No 342
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=60.99 E-value=4.7e+02 Score=33.75 Aligned_cols=18 Identities=11% Similarity=0.189 Sum_probs=14.0
Q ss_pred CCchHHHHHHHHHHHHHH
Q 001464 250 DAPHRVACLLRKVVPLIE 267 (1073)
Q Consensus 250 ~~~~~~~~~l~kvv~e~e 267 (1073)
.-|...+.+++.+++.|-
T Consensus 164 ~dP~~Aa~iaN~la~~Y~ 181 (754)
T TIGR01005 164 EDPKLAAAIPDAIAAAYI 181 (754)
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 347778888898888884
No 343
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=60.96 E-value=58 Score=40.69 Aligned_cols=30 Identities=7% Similarity=-0.003 Sum_probs=20.7
Q ss_pred CchhhhhhhhccCCCcceeeEEecCCCCCC
Q 001464 777 NSKLTQVLQSSLGGQAKTLMMVQLNPDVDS 806 (1073)
Q Consensus 777 dSKLTrLLqdSLGGnsKTlmI~~ISP~~~~ 806 (1073)
++++|++|...|++=.+..+=+.++-...+
T Consensus 472 ~~~~~~~i~~~l~~i~~~~v~~~~~G~~~~ 501 (555)
T TIGR03545 472 SFEATKYILQVLKKIDVLTVDADIKGILED 501 (555)
T ss_pred ccHHHHHHHHHHhhCCeeEEEEeeccccCC
Confidence 477888888888886666666666554333
No 344
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=60.80 E-value=4.5 Score=42.70 Aligned_cols=19 Identities=32% Similarity=0.508 Sum_probs=16.1
Q ss_pred eeEEeecccCCCCCeeeec
Q 001464 573 VCIFAYGQTGSGKTYTMSG 591 (1073)
Q Consensus 573 ~~IfAYGQTGSGKTyTM~G 591 (1073)
-.|+-||++|+||||...+
T Consensus 48 ~~l~l~G~~G~GKThLa~a 66 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVA 66 (178)
T ss_dssp -EEEEEESTTSSHHHHHHH
T ss_pred eEEEEEhhHhHHHHHHHHH
Confidence 3588999999999999875
No 345
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=60.60 E-value=4.2e+02 Score=33.05 Aligned_cols=16 Identities=25% Similarity=0.596 Sum_probs=9.4
Q ss_pred hhhhhhhhhccCCEEE
Q 001464 483 RRLYNEVQDLKGNIRV 498 (1073)
Q Consensus 483 RkL~N~vqeLKGnIRV 498 (1073)
++.++.+..+-|.+++
T Consensus 358 ~qI~dkl~s~~~~~~~ 373 (591)
T KOG2412|consen 358 RQIFDKLDSLFGGIPD 373 (591)
T ss_pred HHHHHHHHHHhcCCCC
Confidence 5566666666655544
No 346
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=60.53 E-value=4.1 Score=46.59 Aligned_cols=29 Identities=34% Similarity=0.460 Sum_probs=21.8
Q ss_pred HHHHHHhhcCcceeEEeecccCCCCCeeee
Q 001464 561 RPLIRSVLDGYNVCIFAYGQTGSGKTYTMS 590 (1073)
Q Consensus 561 ~pLV~svLdGyN~~IfAYGQTGSGKTyTM~ 590 (1073)
..++..++.+ ...|+-.|.||||||++|.
T Consensus 122 ~~~L~~~v~~-~~~ilI~G~tGSGKTTll~ 150 (299)
T TIGR02782 122 RDVLREAVLA-RKNILVVGGTGSGKTTLAN 150 (299)
T ss_pred HHHHHHHHHc-CCeEEEECCCCCCHHHHHH
Confidence 4556666654 4567899999999999874
No 347
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=60.31 E-value=3.4 Score=39.60 Aligned_cols=16 Identities=38% Similarity=0.522 Sum_probs=14.1
Q ss_pred eEEeecccCCCCCeee
Q 001464 574 CIFAYGQTGSGKTYTM 589 (1073)
Q Consensus 574 ~IfAYGQTGSGKTyTM 589 (1073)
+|+-.|++|||||+..
T Consensus 1 vI~I~G~~gsGKST~a 16 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLA 16 (121)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred CEEEECCCCCCHHHHH
Confidence 5889999999999864
No 348
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=60.09 E-value=2.3e+02 Score=31.46 Aligned_cols=14 Identities=29% Similarity=0.468 Sum_probs=7.6
Q ss_pred hhhhhhccCCEEEE
Q 001464 486 YNEVQDLKGNIRVY 499 (1073)
Q Consensus 486 ~N~vqeLKGnIRV~ 499 (1073)
|..-.+.-+.|-||
T Consensus 158 ~~~E~~yg~~i~~~ 171 (251)
T PF11932_consen 158 YQIEMEYGRTIEVY 171 (251)
T ss_pred HHHHHHhCCceeEE
Confidence 33334455667666
No 349
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=59.72 E-value=1.6e+02 Score=35.41 Aligned_cols=45 Identities=20% Similarity=0.342 Sum_probs=25.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001464 347 RDIEISTLKQDLELAKRTHELHCLQLEEQIYETKIESQKKLQELERLLTVSKKKVEELE 405 (1073)
Q Consensus 347 ~~~e~~~Lk~ele~~k~~~e~~~~~le~~~~~~k~ele~~l~e~e~~l~~~~~~v~~le 405 (1073)
...||..|||+|..+.++. .=...++.+|+.+.++...++|..||
T Consensus 274 Hq~Ei~~LKqeLa~~EEK~--------------~Yqs~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 274 HQNEIYNLKQELASMEEKM--------------AYQSYERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHHHHHHHhHHHHH--------------HHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4567777777765433221 11224456666666666666666655
No 350
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=59.49 E-value=3 Score=53.14 Aligned_cols=40 Identities=25% Similarity=0.339 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhhhhhhhhccc
Q 001464 839 ELMEQVGSLKDIITKKDEEIERLQV-LKANISGVRHRVRSL 878 (1073)
Q Consensus 839 eL~~qv~~Lk~~i~~~~eeie~Lq~-l~~~~~~~~~~~~~~ 878 (1073)
....++..|+..+..++..+.||+. ..+.+...|.-+.++
T Consensus 603 ~~~~e~~~l~~~~~~~ekr~~RLkevf~~ks~eFr~av~~l 643 (722)
T PF05557_consen 603 SQEKEIAELKAELASAEKRNQRLKEVFKAKSQEFREAVYSL 643 (722)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677777777777777777753 344455666666554
No 351
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=59.36 E-value=2.9e+02 Score=30.74 Aligned_cols=130 Identities=15% Similarity=0.169 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHhHHHhhHHHHHHHH
Q 001464 358 LELAKRTHELHCLQLEEQIYETKIESQKKLQELERLLTVSKKKVEELESLSESKSQRWKRIEHSYQSFMGCQLGVIQDLR 437 (1073)
Q Consensus 358 le~~k~~~e~~~~~le~~~~~~k~ele~~l~e~e~~l~~~~~~v~~le~~~~~~~~~~~~~~~~~~~~l~~Q~~~l~el~ 437 (1073)
+.-+..-+.........+..+-+.-|++-+.|.+..|.+.+ ..+........+...+........-+.|.++..-|.
T Consensus 4 ~~r~~~~~~a~~~~~~dk~EDp~~~l~Q~ird~~~~l~~ar---~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~ 80 (225)
T COG1842 4 FSRLKDLVKANINELLDKAEDPEKMLEQAIRDMESELAKAR---QALAQAIARQKQLERKLEEAQARAEKLEEKAELALQ 80 (225)
T ss_pred HHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhHHHHHHHHHhhHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhcc
Q 001464 438 VAFESTKHEVLETKKNYSKEFDCLGLNLKRLIDAAEKYHVILAENRRLYNEVQDLK 493 (1073)
Q Consensus 438 ~~~~~~k~ei~~~~~~~~~e~~~l~~~~~~l~~~~~~y~~~l~erRkL~N~vqeLK 493 (1073)
..-..+-.+.+.....|.+.+..+...+..+.+..+.....+ ..|...|.+++
T Consensus 81 ~g~E~LAr~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~---~~Le~Ki~e~~ 133 (225)
T COG1842 81 AGNEDLAREALEEKQSLEDLAKALEAELQQAEEQVEKLKKQL---AALEQKIAELR 133 (225)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
No 352
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=59.30 E-value=10 Score=47.98 Aligned_cols=93 Identities=23% Similarity=0.259 Sum_probs=54.6
Q ss_pred eeeceeeCCCCChHHHHhchHHHHHHhhcCcceeEEeecccCCCCCeeeecCCCCCCCccchh----HHHHHHHHHHHHh
Q 001464 541 FKFNKVFGPEASQEEVFLDTRPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPCISSTEDWGVN----YRALNDLFEISES 616 (1073)
Q Consensus 541 F~FD~VF~~~atQeeVf~~~~pLV~svLdGyN~~IfAYGQTGSGKTyTM~G~~~~~~~~~GIi----pRal~~LF~~~~~ 616 (1073)
|....=|.|.-.|..-|.. +++.+-+|...- ..+|.|||||||||-.-.. ....+-|+ -....+|+..+..
T Consensus 2 f~~~~~~~~~~~Q~~ai~~---l~~~~~~~~~~~-~l~Gvtgs~kt~~~a~~~~-~~~~p~Lvi~~n~~~A~ql~~el~~ 76 (655)
T TIGR00631 2 FKLHSPFQPAGDQPKAIAK---LVEGLTDGEKHQ-TLLGVTGSGKTFTMANVIA-QVNRPTLVIAHNKTLAAQLYNEFKE 76 (655)
T ss_pred ceeccCCCCChHHHHHHHH---HHHhhhcCCCcE-EEECCCCcHHHHHHHHHHH-HhCCCEEEEECCHHHHHHHHHHHHH
Confidence 3444457788888776654 555555664222 3789999999999975211 00111111 1234556655544
Q ss_pred ccCCceEEEEEEEEEEecceee
Q 001464 617 RKNSILYEVGVQMVEIYNEQVR 638 (1073)
Q Consensus 617 ~~~~~~~~V~vS~lEIYnE~V~ 638 (1073)
--........|||+.-|.-..|
T Consensus 77 f~p~~~V~~f~sy~d~y~pe~y 98 (655)
T TIGR00631 77 FFPENAVEYFVSYYDYYQPEAY 98 (655)
T ss_pred hCCCCeEEEEeeecccCCcccc
Confidence 4344447788999999966543
No 353
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=59.15 E-value=1.7e+02 Score=38.17 Aligned_cols=19 Identities=5% Similarity=-0.145 Sum_probs=14.4
Q ss_pred chhHHHHHHHHHhhhhccC
Q 001464 117 MAPVLQCLRSLRASFSFCD 135 (1073)
Q Consensus 117 ~~~Vv~cL~aL~~~~~~k~ 135 (1073)
.-.-++|+.|+..|+.+.+
T Consensus 271 ~l~~lD~l~a~a~~a~~~~ 289 (782)
T PRK00409 271 IFDELDFIFARARYAKALK 289 (782)
T ss_pred HHHHHHHHHHHHHHHHHCC
Confidence 4456789999999887654
No 354
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=58.95 E-value=5.9 Score=44.72 Aligned_cols=30 Identities=27% Similarity=0.380 Sum_probs=24.8
Q ss_pred HHHHHHhhcCcceeEEeecccCCCCCeeee
Q 001464 561 RPLIRSVLDGYNVCIFAYGQTGSGKTYTMS 590 (1073)
Q Consensus 561 ~pLV~svLdGyN~~IfAYGQTGSGKTyTM~ 590 (1073)
-++++.+.--.-+.|+..|.|||||+.||-
T Consensus 116 Pevlk~la~~kRGLviiVGaTGSGKSTtmA 145 (375)
T COG5008 116 PEVLKDLALAKRGLVIIVGATGSGKSTTMA 145 (375)
T ss_pred cHHHHHhhcccCceEEEECCCCCCchhhHH
Confidence 456777766777889999999999999984
No 355
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=58.73 E-value=1.6e+02 Score=32.78 Aligned_cols=97 Identities=19% Similarity=0.195 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhcccc------------hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001464 306 TEENQVVANQLERIKTEKTNIAQKEKLEEQNALRLKKENDD------------RDIEISTLKQDLELAKRTHELHCLQLE 373 (1073)
Q Consensus 306 ~ee~~~~~~~l~~l~~e~~k~eek~~~~e~~~~~l~ke~e~------------~~~e~~~Lk~ele~~k~~~e~~~~~le 373 (1073)
++|++.|.++-+=+-...+.++++...-+++..++....+. .+.=+..|+.+|+.+ .-+.....+.
T Consensus 42 nee~~eLk~qnkli~K~l~ei~~~qd~reK~~~~I~ssL~eTtkdf~~~~~k~~~dF~~~Lq~~Lk~V--~tde~k~~~~ 119 (230)
T PF03904_consen 42 NEEIQELKRQNKLIIKYLSEIEEKQDIREKNLKEIKSSLEETTKDFIDKTEKVHNDFQDILQDELKDV--DTDELKNIAQ 119 (230)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--chHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001464 374 EQIYETKIESQKKLQELERLLTVSKKKVEEL 404 (1073)
Q Consensus 374 ~~~~~~k~ele~~l~e~e~~l~~~~~~v~~l 404 (1073)
...++.+.+++.-++|.+...++.++..+.+
T Consensus 120 ~ei~k~r~e~~~ml~evK~~~E~y~k~~k~~ 150 (230)
T PF03904_consen 120 NEIKKVREENKSMLQEVKQSHEKYQKRQKSM 150 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 356
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=58.60 E-value=1.8e+02 Score=31.05 Aligned_cols=21 Identities=24% Similarity=0.479 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHhhhhhhhhhh
Q 001464 471 AAEKYHVILAENRRLYNEVQD 491 (1073)
Q Consensus 471 ~~~~y~~~l~erRkL~N~vqe 491 (1073)
.-++|+..-..||+.||+|.|
T Consensus 160 ~y~~~~~~wrk~krmf~ei~d 180 (201)
T KOG4603|consen 160 EYQKYCKEWRKRKRMFREIID 180 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345666666778889998876
No 357
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=57.65 E-value=3.5 Score=39.60 Aligned_cols=16 Identities=38% Similarity=0.530 Sum_probs=13.7
Q ss_pred EEeecccCCCCCeeee
Q 001464 575 IFAYGQTGSGKTYTMS 590 (1073)
Q Consensus 575 IfAYGQTGSGKTyTM~ 590 (1073)
|+-||+.|+|||+...
T Consensus 1 ill~G~~G~GKT~l~~ 16 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLAR 16 (132)
T ss_dssp EEEESSTTSSHHHHHH
T ss_pred CEEECcCCCCeeHHHH
Confidence 5789999999998764
No 358
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=57.34 E-value=4.7e+02 Score=32.53 Aligned_cols=42 Identities=24% Similarity=0.299 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHH
Q 001464 325 NIAQKEKLEEQNALRLKKENDDRDIEISTLKQDLELAKRTHE 366 (1073)
Q Consensus 325 k~eek~~~~e~~~~~l~ke~e~~~~e~~~Lk~ele~~k~~~e 366 (1073)
.++|+...+++.+..+++..-+.+--+..|...+..-.++..
T Consensus 341 ~LqEksqile~sv~~l~~~lkDLd~~~~aLs~rld~qEqtL~ 382 (531)
T PF15450_consen 341 LLQEKSQILEDSVAELMRQLKDLDDHILALSWRLDLQEQTLN 382 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 345555566666666666665555555555544443333333
No 359
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=57.21 E-value=6.7e+02 Score=34.29 Aligned_cols=27 Identities=19% Similarity=0.102 Sum_probs=14.5
Q ss_pred hhHHHHHhhhhhHHHHHHHHHHHHHHH
Q 001464 453 NYSKEFDCLGLNLKRLIDAAEKYHVIL 479 (1073)
Q Consensus 453 ~~~~e~~~l~~~~~~l~~~~~~y~~~l 479 (1073)
.|-.+...|....+.|.++.+.++..+
T Consensus 401 ~~l~~l~~L~~~q~QL~~~~~~l~~~L 427 (1109)
T PRK10929 401 TLILELTKLKVANSQLEDALKEVNEAT 427 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555666666665544
No 360
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=57.17 E-value=3.2e+02 Score=30.63 Aligned_cols=25 Identities=20% Similarity=0.255 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001464 350 EISTLKQDLELAKRTHELHCLQLEE 374 (1073)
Q Consensus 350 e~~~Lk~ele~~k~~~e~~~~~le~ 374 (1073)
....+-.+++.+|+.|+..|.+.+.
T Consensus 127 ~~~~~~~~l~kaKk~Y~~~cke~e~ 151 (258)
T cd07655 127 PWAKLLKKVEKAKKAYHAACKAEKS 151 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444456788888999998888765
No 361
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=57.10 E-value=2.4e+02 Score=35.43 Aligned_cols=18 Identities=0% Similarity=0.054 Sum_probs=11.5
Q ss_pred eeeeceeeCCCCChHHHH
Q 001464 540 LFKFNKVFGPEASQEEVF 557 (1073)
Q Consensus 540 ~F~FD~VF~~~atQeeVf 557 (1073)
.+.|+..+..=+++.+++
T Consensus 356 ~~~~~~~~~niT~~~~~~ 373 (555)
T TIGR03545 356 VGEIKGEVSNITNDHDLL 373 (555)
T ss_pred cceEEEEEEecCCChhhh
Confidence 466777766666666665
No 362
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=56.87 E-value=5.8e+02 Score=33.48 Aligned_cols=42 Identities=12% Similarity=0.203 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhcCCCCCCCCccHHHHHHHchhhHHHHHHHhhh
Q 001464 32 LSTLVEWLNEMIPHIHLPFEASEEKLRACLVDGTVLCLVLNKL 74 (1073)
Q Consensus 32 ~~e~~~Wie~vlg~~~lp~~~s~edl~~~LrDGviLC~L~N~l 74 (1073)
-..|..|+.-..=..++....+.+||. -...-|+|..|---|
T Consensus 292 LfHAaAw~k~f~l~k~~~K~~Tqde~q-~~as~VlLaaLSIP~ 333 (988)
T KOG2072|consen 292 LFHAAAWLKLFKLYKNMNKNLTQDELQ-RMASRVLLAALSIPI 333 (988)
T ss_pred HHHHHHHHHHHHHHHHhcccccHHHHH-HHHHHHHHHHhcCCC
Confidence 345566665433222333344555544 334556666654443
No 363
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=56.74 E-value=7.2 Score=42.39 Aligned_cols=27 Identities=26% Similarity=0.469 Sum_probs=17.7
Q ss_pred HHHHhhcCcceeEEeecccCCCCCeeeec
Q 001464 563 LIRSVLDGYNVCIFAYGQTGSGKTYTMSG 591 (1073)
Q Consensus 563 LV~svLdGyN~~IfAYGQTGSGKTyTM~G 591 (1073)
+++.++ .+-.+++.|+.||||||.-..
T Consensus 12 ~~~al~--~~~~v~~~G~AGTGKT~LA~a 38 (205)
T PF02562_consen 12 ALDALL--NNDLVIVNGPAGTGKTFLALA 38 (205)
T ss_dssp HHHHHH--H-SEEEEE--TTSSTTHHHHH
T ss_pred HHHHHH--hCCeEEEECCCCCcHHHHHHH
Confidence 344444 566899999999999987543
No 364
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=56.24 E-value=6.3 Score=39.63 Aligned_cols=28 Identities=32% Similarity=0.358 Sum_probs=19.3
Q ss_pred HHHHhhcCcceeEEeecccCCCCCeeeec
Q 001464 563 LIRSVLDGYNVCIFAYGQTGSGKTYTMSG 591 (1073)
Q Consensus 563 LV~svLdGyN~~IfAYGQTGSGKTyTM~G 591 (1073)
++..++++. ..++..|+||||||.++..
T Consensus 16 ~~~~~~~~~-~~~~i~~~~GsGKT~~~~~ 43 (201)
T smart00487 16 AIEALLSGL-RDVILAAPTGSGKTLAALL 43 (201)
T ss_pred HHHHHHcCC-CcEEEECCCCCchhHHHHH
Confidence 344455442 3456788999999998865
No 365
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=56.13 E-value=4.9 Score=46.56 Aligned_cols=28 Identities=43% Similarity=0.559 Sum_probs=20.2
Q ss_pred HHHHHhhcCcceeEEeecccCCCCCeeee
Q 001464 562 PLIRSVLDGYNVCIFAYGQTGSGKTYTMS 590 (1073)
Q Consensus 562 pLV~svLdGyN~~IfAYGQTGSGKTyTM~ 590 (1073)
.++..++.+- ..|+-.|.||||||++|-
T Consensus 135 ~~L~~~v~~~-~nilI~G~tGSGKTTll~ 162 (323)
T PRK13833 135 SVIRSAIDSR-LNIVISGGTGSGKTTLAN 162 (323)
T ss_pred HHHHHHHHcC-CeEEEECCCCCCHHHHHH
Confidence 4555555432 347889999999999984
No 366
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=56.11 E-value=1.2e+02 Score=30.74 Aligned_cols=36 Identities=31% Similarity=0.466 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001464 371 QLEEQIYETKIESQKKLQELERLLTVSKKKVEELES 406 (1073)
Q Consensus 371 ~le~~~~~~k~ele~~l~e~e~~l~~~~~~v~~le~ 406 (1073)
.++.+.++.+..+++.+..++..++....++.+|.+
T Consensus 81 ~~~~~LEe~ke~l~k~i~~les~~e~I~~~m~~LK~ 116 (131)
T KOG1760|consen 81 KLQDQLEEKKETLEKEIEELESELESISARMDELKK 116 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555666666666666666655555555443
No 367
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=56.05 E-value=3.4e+02 Score=30.48 Aligned_cols=27 Identities=26% Similarity=0.390 Sum_probs=9.1
Q ss_pred HHhhhHHHHHHHHHHHHHHhhhcccch
Q 001464 321 TEKTNIAQKEKLEEQNALRLKKENDDR 347 (1073)
Q Consensus 321 ~e~~k~eek~~~~e~~~~~l~ke~e~~ 347 (1073)
.++..++.+....++...+|.......
T Consensus 47 eea~~Le~k~~eaee~~~rL~~~~~~~ 73 (246)
T PF00769_consen 47 EEAEELEQKRQEAEEEKQRLEEEAEMQ 73 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444443444444444444333
No 368
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=55.69 E-value=3.1e+02 Score=29.91 Aligned_cols=11 Identities=36% Similarity=0.347 Sum_probs=4.5
Q ss_pred hhHHHHHHHHH
Q 001464 307 EENQVVANQLE 317 (1073)
Q Consensus 307 ee~~~~~~~l~ 317 (1073)
+++..+..++.
T Consensus 43 ~e~~~L~~q~~ 53 (193)
T PF14662_consen 43 EEITDLRKQLK 53 (193)
T ss_pred HHHHHHHHHHH
Confidence 34444444433
No 369
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=55.59 E-value=2.5e+02 Score=36.18 Aligned_cols=22 Identities=14% Similarity=0.153 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhH
Q 001464 254 RVACLLRKVVPLIERRTATQYQ 275 (1073)
Q Consensus 254 ~~~~~l~kvv~e~e~ris~q~~ 275 (1073)
-.+..|..+++|.++|+..+..
T Consensus 490 ~~~~~l~~llee~~~~~~~~~~ 511 (809)
T KOG0247|consen 490 NDKETLDQLLEELEKRILLRTK 511 (809)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 3466888899999999988766
No 370
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=55.50 E-value=1.7e+02 Score=33.94 Aligned_cols=17 Identities=29% Similarity=0.327 Sum_probs=7.5
Q ss_pred hHHHHHHHHHHHHHHHH
Q 001464 348 DIEISTLKQDLELAKRT 364 (1073)
Q Consensus 348 ~~e~~~Lk~ele~~k~~ 364 (1073)
..++-.||..|+.+.+.
T Consensus 111 ~yqvd~Lkd~lee~eE~ 127 (302)
T PF09738_consen 111 MYQVDLLKDKLEELEET 127 (302)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444433
No 371
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=55.50 E-value=4.2e+02 Score=33.06 Aligned_cols=25 Identities=24% Similarity=0.432 Sum_probs=13.6
Q ss_pred HHHhhHHHHHhhhhhHHHHHHHHHH
Q 001464 450 TKKNYSKEFDCLGLNLKRLIDAAEK 474 (1073)
Q Consensus 450 ~~~~~~~e~~~l~~~~~~l~~~~~~ 474 (1073)
..+.|..|+..++..+..|....+-
T Consensus 656 AErdFk~Elq~~~~~~~~L~~~iET 680 (741)
T KOG4460|consen 656 AERDFKKELQLIPDQLRHLGNAIET 680 (741)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3345556666666666655544433
No 372
>PRK00106 hypothetical protein; Provisional
Probab=55.47 E-value=5.2e+02 Score=32.46 Aligned_cols=13 Identities=31% Similarity=0.386 Sum_probs=7.2
Q ss_pred hhhhhhhhhhccC
Q 001464 482 NRRLYNEVQDLKG 494 (1073)
Q Consensus 482 rRkL~N~vqeLKG 494 (1073)
|+-+-..+|..-+
T Consensus 206 ~~ii~~aiqr~a~ 218 (535)
T PRK00106 206 KDLLAQAMQRLAG 218 (535)
T ss_pred HHHHHHHHHHhcc
Confidence 4445566666554
No 373
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=55.31 E-value=7.7 Score=46.08 Aligned_cols=20 Identities=35% Similarity=0.474 Sum_probs=17.1
Q ss_pred ceeEEeecccCCCCCeeeec
Q 001464 572 NVCIFAYGQTGSGKTYTMSG 591 (1073)
Q Consensus 572 N~~IfAYGQTGSGKTyTM~G 591 (1073)
...|+.+|+||+|||+|+.-
T Consensus 174 ~~vi~lvGptGvGKTTT~aK 193 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAK 193 (388)
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 45788999999999999853
No 374
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=55.16 E-value=78 Score=35.83 Aligned_cols=81 Identities=22% Similarity=0.374 Sum_probs=48.6
Q ss_pred eeeceeeCCCCChHHHHhch-HHHHHHhh---cCcc--eeEEeecccCCCCCeeeecCCCCC-------------CCccc
Q 001464 541 FKFNKVFGPEASQEEVFLDT-RPLIRSVL---DGYN--VCIFAYGQTGSGKTYTMSGPCISS-------------TEDWG 601 (1073)
Q Consensus 541 F~FD~VF~~~atQeeVf~~~-~pLV~svL---dGyN--~~IfAYGQTGSGKTyTM~G~~~~~-------------~~~~G 601 (1073)
.+|.-|=+-+..-++|-+.+ -||.+.=| =|++ --|+.||+.|+|||...-.-...+ ..-.|
T Consensus 152 vsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylg 231 (408)
T KOG0727|consen 152 VSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLG 231 (408)
T ss_pred ccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhc
Confidence 44555555555556666655 46655433 1443 348999999999974332110000 11246
Q ss_pred hhHHHHHHHHHHHHhccCCc
Q 001464 602 VNYRALNDLFEISESRKNSI 621 (1073)
Q Consensus 602 IipRal~~LF~~~~~~~~~~ 621 (1073)
--||.++++|....+....+
T Consensus 232 egprmvrdvfrlakenapsi 251 (408)
T KOG0727|consen 232 EGPRMVRDVFRLAKENAPSI 251 (408)
T ss_pred cCcHHHHHHHHHHhccCCcE
Confidence 77999999999887665543
No 375
>PRK09183 transposase/IS protein; Provisional
Probab=55.05 E-value=5.9 Score=44.26 Aligned_cols=21 Identities=33% Similarity=0.389 Sum_probs=16.8
Q ss_pred cCcceeEEeecccCCCCCeeeec
Q 001464 569 DGYNVCIFAYGQTGSGKTYTMSG 591 (1073)
Q Consensus 569 dGyN~~IfAYGQTGSGKTyTM~G 591 (1073)
.|.| |+-||++|+||||.+.+
T Consensus 101 ~~~~--v~l~Gp~GtGKThLa~a 121 (259)
T PRK09183 101 RNEN--IVLLGPSGVGKTHLAIA 121 (259)
T ss_pred cCCe--EEEEeCCCCCHHHHHHH
Confidence 4665 45699999999998865
No 376
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=55.00 E-value=9 Score=49.38 Aligned_cols=26 Identities=46% Similarity=0.496 Sum_probs=21.3
Q ss_pred HHHHhhcCcceeEEeecccCCCCCeeee
Q 001464 563 LIRSVLDGYNVCIFAYGQTGSGKTYTMS 590 (1073)
Q Consensus 563 LV~svLdGyN~~IfAYGQTGSGKTyTM~ 590 (1073)
.+..+.+|.|+.|.| +||||||-+-|
T Consensus 30 a~~~i~~G~nvLiiA--PTGsGKTeAAf 55 (814)
T COG1201 30 AIPEIHSGENVLIIA--PTGSGKTEAAF 55 (814)
T ss_pred HHHHHhCCCceEEEc--CCCCChHHHHH
Confidence 556678999998876 89999998744
No 377
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=54.95 E-value=5.6 Score=46.33 Aligned_cols=30 Identities=30% Similarity=0.397 Sum_probs=23.5
Q ss_pred hHHHHHHhhcCcceeEEeecccCCCCCeeee
Q 001464 560 TRPLIRSVLDGYNVCIFAYGQTGSGKTYTMS 590 (1073)
Q Consensus 560 ~~pLV~svLdGyN~~IfAYGQTGSGKTyTM~ 590 (1073)
+..++..++.+. +.|+-.|-||||||+++-
T Consensus 162 ~a~~L~~av~~r-~NILisGGTGSGKTTlLN 191 (355)
T COG4962 162 AAKFLRRAVGIR-CNILISGGTGSGKTTLLN 191 (355)
T ss_pred HHHHHHHHHhhc-eeEEEeCCCCCCHHHHHH
Confidence 345666777666 778999999999998863
No 378
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=54.73 E-value=5.2 Score=42.01 Aligned_cols=28 Identities=32% Similarity=0.478 Sum_probs=18.3
Q ss_pred HHHHhhcCcceeEEeecccCCCCCeeeec
Q 001464 563 LIRSVLDGYNVCIFAYGQTGSGKTYTMSG 591 (1073)
Q Consensus 563 LV~svLdGyN~~IfAYGQTGSGKTyTM~G 591 (1073)
.|..++.--. ..+..|+.|||||+|+..
T Consensus 9 Ai~~~~~~~~-~~~i~GpPGTGKT~~l~~ 36 (236)
T PF13086_consen 9 AIQSALSSNG-ITLIQGPPGTGKTTTLAS 36 (236)
T ss_dssp HHHHHCTSSE--EEEE-STTSSHHHHHHH
T ss_pred HHHHHHcCCC-CEEEECCCCCChHHHHHH
Confidence 4555554333 456799999999998865
No 379
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=54.62 E-value=2.6e+02 Score=30.14 Aligned_cols=122 Identities=18% Similarity=0.285 Sum_probs=0.0
Q ss_pred cchHHHHHHHHHhHhhhhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHhhhhhHHHhhHHHHHHHHHHHhhhhccchhh
Q 001464 229 TKSLFNIVNRILDECVERKNGDAPHRVACLLRKVVPLIERRTATQYQNFKNQNNLFRAREEKYKSRIRVLETLTVGTTEE 308 (1073)
Q Consensus 229 ~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~l~kvv~e~e~ris~q~~~~~~q~~~~~~~~~~~~~~~~~le~l~~~~~ee 308 (1073)
++-+.-|++.|=-+|.||-- ||.+|-.|+ ..++.+-...|.|.+..--.-+...+..
T Consensus 65 ~~~F~ELIRQVTi~C~ERGl---------LL~rvrde~--------------~~~l~~y~~l~~s~~~f~~rk~l~~e~~ 121 (189)
T PF10211_consen 65 SQCFDELIRQVTIDCPERGL---------LLLRVRDEY--------------RMTLDAYQTLYESSIAFGMRKALQAEQG 121 (189)
T ss_pred HHHHHHHHHHHHhCcHHHhH---------HHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001464 309 NQVVANQLERIKTEKTNIAQKEKLEEQNALRLKKENDD-RDIEISTLKQDLELAKRTHELHCLQLE 373 (1073)
Q Consensus 309 ~~~~~~~l~~l~~e~~k~eek~~~~e~~~~~l~ke~e~-~~~e~~~Lk~ele~~k~~~e~~~~~le 373 (1073)
...+..++..|+.++..++.+..........+.+..+. .+.+......|+..+|+..+..-.+++
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~~~ql~~~l~ 187 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQNQQLKAQLE 187 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 380
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=54.57 E-value=2.4e+02 Score=34.59 Aligned_cols=16 Identities=25% Similarity=0.225 Sum_probs=11.0
Q ss_pred HHHHHHhhhhhHHHhh
Q 001464 264 PLIERRTATQYQNFKN 279 (1073)
Q Consensus 264 ~e~e~ris~q~~~~~~ 279 (1073)
+++-+|+-.|-++.+.
T Consensus 337 ~dL~~R~K~Q~q~~~~ 352 (508)
T KOG3091|consen 337 EDLRQRLKVQDQEVKQ 352 (508)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5667777777776655
No 381
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=54.42 E-value=6.8 Score=44.10 Aligned_cols=40 Identities=25% Similarity=0.218 Sum_probs=25.0
Q ss_pred CChHHHHhchHHHHHHhhcC--cceeEEeecccCCCCCeeee
Q 001464 551 ASQEEVFLDTRPLIRSVLDG--YNVCIFAYGQTGSGKTYTMS 590 (1073)
Q Consensus 551 atQeeVf~~~~pLV~svLdG--yN~~IfAYGQTGSGKTyTM~ 590 (1073)
..|+++......+++....+ ....++-||+.|+|||+...
T Consensus 7 iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~ 48 (305)
T TIGR00635 7 IGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAH 48 (305)
T ss_pred cCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHH
Confidence 34666665555555544322 22336779999999998764
No 382
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=54.21 E-value=6.2 Score=41.50 Aligned_cols=29 Identities=28% Similarity=0.389 Sum_probs=20.5
Q ss_pred HHHHHHhhcCcceeEEeecccCCCCCeeee
Q 001464 561 RPLIRSVLDGYNVCIFAYGQTGSGKTYTMS 590 (1073)
Q Consensus 561 ~pLV~svLdGyN~~IfAYGQTGSGKTyTM~ 590 (1073)
.+++..++.. ...|.-.|+||||||.+|.
T Consensus 15 ~~~l~~~v~~-g~~i~I~G~tGSGKTTll~ 43 (186)
T cd01130 15 AAYLWLAVEA-RKNILISGGTGSGKTTLLN 43 (186)
T ss_pred HHHHHHHHhC-CCEEEEECCCCCCHHHHHH
Confidence 4556555543 3456778999999999874
No 383
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=53.60 E-value=4.9e+02 Score=31.66 Aligned_cols=18 Identities=6% Similarity=0.248 Sum_probs=12.9
Q ss_pred CCchHHHHHHHHHHHHHH
Q 001464 250 DAPHRVACLLRKVVPLIE 267 (1073)
Q Consensus 250 ~~~~~~~~~l~kvv~e~e 267 (1073)
.=|...+.+++.+++.|-
T Consensus 131 ~dP~~Aa~i~n~l~~~yi 148 (498)
T TIGR03007 131 KDPELAKDVVQTLLTIFV 148 (498)
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 347777788888877773
No 384
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=53.27 E-value=8.2 Score=43.53 Aligned_cols=47 Identities=23% Similarity=0.355 Sum_probs=31.3
Q ss_pred ceeEEeecccCCCCCeeeecCCCC-------------CCCccchhHHHHHHHHHHHHhcc
Q 001464 572 NVCIFAYGQTGSGKTYTMSGPCIS-------------STEDWGVNYRALNDLFEISESRK 618 (1073)
Q Consensus 572 N~~IfAYGQTGSGKTyTM~G~~~~-------------~~~~~GIipRal~~LF~~~~~~~ 618 (1073)
--.|+-||++|+|||++--.-.+. -.+.-|=-.|-+++||+......
T Consensus 151 PknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehVGdgar~Ihely~rA~~~a 210 (368)
T COG1223 151 PKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVGDGARRIHELYERARKAA 210 (368)
T ss_pred cceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHhhhHHHHHHHHHHHHHhcC
Confidence 446788999999999864321100 12345677788999998876543
No 385
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=53.24 E-value=3.4e+02 Score=32.30 Aligned_cols=112 Identities=15% Similarity=0.169 Sum_probs=64.9
Q ss_pred hhHHHHHHHHHHHhhhhccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHH
Q 001464 286 AREEKYKSRIRVLETLTVGTTEENQVVANQLERIKTEKTNIAQKEKLEEQNALRLKKENDDRDIEISTLKQDLELAKRTH 365 (1073)
Q Consensus 286 ~~~~~~~~~~~~le~l~~~~~ee~~~~~~~l~~l~~e~~k~eek~~~~e~~~~~l~ke~e~~~~e~~~Lk~ele~~k~~~ 365 (1073)
+-..++++++-....+..+..........+|+.|-.+.++.-||...-|+.+. ...+..-.+..+++.+|..+++.|
T Consensus 213 ~d~kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN---~qle~l~~eYr~~~~~ls~~~~~y 289 (359)
T PF10498_consen 213 ADAKDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYIN---NQLEPLIQEYRSAQDELSEVQEKY 289 (359)
T ss_pred CCcchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHH
Confidence 33456666666666666666666677777777777776666665555554222 222333333444445555454444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001464 366 ELHCLQLEEQIYETKIESQKKLQELERLLTVSKKKVEELESLS 408 (1073)
Q Consensus 366 e~~~~~le~~~~~~k~ele~~l~e~e~~l~~~~~~v~~le~~~ 408 (1073)
... .....++...|.++-.+|+..+.++++..+..
T Consensus 290 ~~~--------s~~V~~~t~~L~~IseeLe~vK~emeerg~~m 324 (359)
T PF10498_consen 290 KQA--------SEGVSERTRELAEISEELEQVKQEMEERGSSM 324 (359)
T ss_pred HHH--------hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 432 22344556667777777877777777765544
No 386
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=53.23 E-value=4.9e+02 Score=31.54 Aligned_cols=6 Identities=33% Similarity=0.445 Sum_probs=2.6
Q ss_pred EEEEEE
Q 001464 623 YEVGVQ 628 (1073)
Q Consensus 623 ~~V~vS 628 (1073)
|.|.+.
T Consensus 412 y~v~v~ 417 (457)
T TIGR01000 412 YKVIAT 417 (457)
T ss_pred EEEEEE
Confidence 444443
No 387
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=52.92 E-value=6.6 Score=49.81 Aligned_cols=36 Identities=31% Similarity=0.379 Sum_probs=27.4
Q ss_pred HHHHhchHHHHHHh-hcCcceeEEeecccCCCCCeee
Q 001464 554 EEVFLDTRPLIRSV-LDGYNVCIFAYGQTGSGKTYTM 589 (1073)
Q Consensus 554 eeVf~~~~pLV~sv-LdGyN~~IfAYGQTGSGKTyTM 589 (1073)
--||.-+......+ -.|-|-||+..|.+|||||+|+
T Consensus 66 PHif~~a~~A~~~m~~~~~~Q~IiisGeSGsGKTe~~ 102 (689)
T PF00063_consen 66 PHIFAVAQRAYRQMLRTRQNQSIIISGESGSGKTETS 102 (689)
T ss_dssp SSHHHHHHHHHHHHHHHTSEEEEEEEESTTSSHHHHH
T ss_pred Cccchhhhcccccccccccccceeeccccccccccch
Confidence 34776654444444 3689999999999999999985
No 388
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=52.43 E-value=3.1e+02 Score=36.05 Aligned_cols=135 Identities=15% Similarity=0.135 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhhhHHHhhhhhHHHhhHHHHHHHHHHHhhhhccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 001464 257 CLLRKVVPLIERRTATQYQNFKNQNNLFRAREEKYKSRIRVLETLTVGTTEENQVVANQLERIKTEKTNIAQKEKLEEQN 336 (1073)
Q Consensus 257 ~~l~kvv~e~e~ris~q~~~~~~q~~~~~~~~~~~~~~~~~le~l~~~~~ee~~~~~~~l~~l~~e~~k~eek~~~~e~~ 336 (1073)
.+++-+=+-.+...--+-+|++.|+.+++.-....+ .+.+..|..-.+.|-..+...++..+.|..+. ++..-...+
T Consensus 1041 el~~~~~~~~~~e~e~k~~hl~~~~~~l~kl~~eaq--~~Q~k~LK~~~e~e~kElk~~l~kkr~e~ik~-~~~~kdK~e 1117 (1189)
T KOG1265|consen 1041 ELLEMRREQYEEEFELKEEHLKEQISLLRKLLSEAQ--TNQTKALKESLEKETKELKKKLDKKRMEDIKV-DKVIKDKAE 1117 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-ccccccHHH
Q ss_pred HHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001464 337 ALRLKKENDDRDIEISTLKQDLELAKRTHELHCLQLEEQIYETKIESQKKLQELERLLTV 396 (1073)
Q Consensus 337 ~~~l~ke~e~~~~e~~~Lk~ele~~k~~~e~~~~~le~~~~~~k~ele~~l~e~e~~l~~ 396 (1073)
..+..+|+... -|....++...+.+..+++..+|+.+-.+..+.|.+.-+.+..++..
T Consensus 1118 ~er~~rE~n~s--~i~~~V~e~krL~~~~~k~~e~L~k~~~~~leql~e~~kal~~e~~~ 1175 (1189)
T KOG1265|consen 1118 RERRKRELNSS--NIKEFVEERKRLAEKQSKRQEQLVKKHLEVLEQLAEEEKALDAEAEQ 1175 (1189)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
No 389
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=52.35 E-value=1.9e+02 Score=37.21 Aligned_cols=68 Identities=26% Similarity=0.190 Sum_probs=41.0
Q ss_pred HHHHHHHhhhcccchhHH---HHHHHHHHHHHH-HHHHHHHH------HHHHHHHHHHHHHHHHHHH------HHHHHHH
Q 001464 333 EEQNALRLKKENDDRDIE---ISTLKQDLELAK-RTHELHCL------QLEEQIYETKIESQKKLQE------LERLLTV 396 (1073)
Q Consensus 333 ~e~~~~~l~ke~e~~~~e---~~~Lk~ele~~k-~~~e~~~~------~le~~~~~~k~ele~~l~e------~e~~l~~ 396 (1073)
+.+.+.+|+.|.++.-.+ -..|++.|..++ +-++.... .|..+..+.+.++++++.+ ++..++.
T Consensus 460 L~e~IeKLk~E~d~e~S~A~~~~gLk~kL~~Lr~E~sKa~~~~~~~~~~L~eK~~kLk~Efnkkl~ea~n~p~lk~Kle~ 539 (762)
T PLN03229 460 LNEMIEKLKKEIDLEYTEAVIAMGLQERLENLREEFSKANSQDQLMHPVLMEKIEKLKDEFNKRLSRAPNYLSLKYKLDM 539 (762)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHH
Confidence 345566666665543222 247888888888 44444321 2555677888888888887 4444444
Q ss_pred HHHH
Q 001464 397 SKKK 400 (1073)
Q Consensus 397 ~~~~ 400 (1073)
++..
T Consensus 540 Lk~~ 543 (762)
T PLN03229 540 LNEF 543 (762)
T ss_pred HHHH
Confidence 4443
No 390
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=52.03 E-value=5.6e+02 Score=31.87 Aligned_cols=17 Identities=6% Similarity=0.092 Sum_probs=9.9
Q ss_pred hhHHHHHHHhhhcCCCc
Q 001464 63 DGTVLCLVLNKLSPDSV 79 (1073)
Q Consensus 63 DGviLC~L~N~l~Pgsv 79 (1073)
-+.=|-.|-+-+++.+.
T Consensus 60 Q~seL~~l~~ev~~~~~ 76 (531)
T PF15450_consen 60 QDSELMQLRQEVKQRAQ 76 (531)
T ss_pred HHHHHHHHHHHHHhhcc
Confidence 35556667776665444
No 391
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=51.94 E-value=2.6e+02 Score=32.18 Aligned_cols=43 Identities=9% Similarity=0.268 Sum_probs=27.3
Q ss_pred HHhhHHHHHHHHHHHhhhhccchhhHHHHHHHHHHHHHHhhhH
Q 001464 284 FRAREEKYKSRIRVLETLTVGTTEENQVVANQLERIKTEKTNI 326 (1073)
Q Consensus 284 ~~~~~~~~~~~~~~le~l~~~~~ee~~~~~~~l~~l~~e~~k~ 326 (1073)
+|+-..+++--+..++++.++..+.+....-+|+.|-.|-++.
T Consensus 218 ~k~DakDWR~H~~QM~s~~~nIe~~~~~~~~~Ldklh~eit~~ 260 (384)
T KOG0972|consen 218 LKQDAKDWRLHLEQMNSMHKNIEQKVGNVGPYLDKLHKEITKA 260 (384)
T ss_pred hccccHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Confidence 4445556666666677777777766666777777765554433
No 392
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=51.83 E-value=6.8e+02 Score=32.77 Aligned_cols=24 Identities=21% Similarity=0.248 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001464 841 MEQVGSLKDIITKKDEEIERLQVL 864 (1073)
Q Consensus 841 ~~qv~~Lk~~i~~~~eeie~Lq~l 864 (1073)
+.++.++++.+...-+...+|-..
T Consensus 1355 ~qq~eRd~dlienaaedRariiae 1378 (1424)
T KOG4572|consen 1355 EQQIERDGDLIENAAEDRARIIAE 1378 (1424)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHH
Confidence 445666777776666666655433
No 393
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=51.63 E-value=7.2e+02 Score=33.01 Aligned_cols=14 Identities=29% Similarity=0.570 Sum_probs=6.6
Q ss_pred ccchhhhhcccCCC
Q 001464 194 HTFHDVLHLKEGGY 207 (1073)
Q Consensus 194 ~~~~~~~~~~~~~~ 207 (1073)
.-|....=+.||-+
T Consensus 132 ~~f~~~v~l~QGe~ 145 (908)
T COG0419 132 DTFTRSVYLPQGEF 145 (908)
T ss_pred HHHhHHheeccHhH
Confidence 33444444566643
No 394
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=51.60 E-value=1.8e+02 Score=30.27 Aligned_cols=20 Identities=15% Similarity=0.255 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHhhhhhh
Q 001464 468 LIDAAEKYHVILAENRRLYN 487 (1073)
Q Consensus 468 l~~~~~~y~~~l~erRkL~N 487 (1073)
+...-..|+.....||+++|
T Consensus 150 ~~~~~~~~~k~w~kRKri~k 169 (169)
T PF07106_consen 150 LEKEYKKWRKEWKKRKRICK 169 (169)
T ss_pred HHHHHHHHHHHHHHHHHHhC
Confidence 44444556666677888764
No 395
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=51.53 E-value=5.7 Score=40.12 Aligned_cols=15 Identities=33% Similarity=0.534 Sum_probs=12.2
Q ss_pred EEeecccCCCCCeee
Q 001464 575 IFAYGQTGSGKTYTM 589 (1073)
Q Consensus 575 IfAYGQTGSGKTyTM 589 (1073)
+--.|+||+||||+-
T Consensus 56 lSfHG~tGtGKn~v~ 70 (127)
T PF06309_consen 56 LSFHGWTGTGKNFVS 70 (127)
T ss_pred EEeecCCCCcHHHHH
Confidence 446799999999973
No 396
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=51.51 E-value=8.2 Score=40.40 Aligned_cols=25 Identities=40% Similarity=0.604 Sum_probs=19.1
Q ss_pred HHHHhhcCcceeEEeecccCCCCCeee
Q 001464 563 LIRSVLDGYNVCIFAYGQTGSGKTYTM 589 (1073)
Q Consensus 563 LV~svLdGyN~~IfAYGQTGSGKTyTM 589 (1073)
.++.++.|.| ++..++||+|||.+.
T Consensus 29 ~~~~~~~~~~--~li~~~TG~GKT~~~ 53 (203)
T cd00268 29 AIPPLLSGRD--VIGQAQTGSGKTAAF 53 (203)
T ss_pred HHHHHhcCCc--EEEECCCCCcHHHHH
Confidence 4455666877 578899999999873
No 397
>PTZ00424 helicase 45; Provisional
Probab=51.16 E-value=7.5 Score=45.34 Aligned_cols=27 Identities=41% Similarity=0.692 Sum_probs=21.3
Q ss_pred HHHHHhhcCcceeEEeecccCCCCCeeee
Q 001464 562 PLIRSVLDGYNVCIFAYGQTGSGKTYTMS 590 (1073)
Q Consensus 562 pLV~svLdGyN~~IfAYGQTGSGKTyTM~ 590 (1073)
..|..+++|.|+ +..++||||||.+..
T Consensus 57 ~ai~~i~~~~d~--ii~apTGsGKT~~~~ 83 (401)
T PTZ00424 57 RGIKPILDGYDT--IGQAQSGTGKTATFV 83 (401)
T ss_pred HHHHHHhCCCCE--EEECCCCChHHHHHH
Confidence 456778899986 467899999998654
No 398
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=50.96 E-value=5e+02 Score=30.99 Aligned_cols=20 Identities=10% Similarity=0.331 Sum_probs=10.1
Q ss_pred HHHHhHHHHHHHHHhhHHHH
Q 001464 439 AFESTKHEVLETKKNYSKEF 458 (1073)
Q Consensus 439 ~~~~~k~ei~~~~~~~~~e~ 458 (1073)
....++.++...+..|..-+
T Consensus 343 ~~~~L~r~~~~~~~~y~~ll 362 (444)
T TIGR03017 343 EMSVLQRDVENAQRAYDAAM 362 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555433
No 399
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=50.65 E-value=5.5 Score=44.07 Aligned_cols=21 Identities=29% Similarity=0.284 Sum_probs=16.5
Q ss_pred cceeEEeecccCCCCCeeeec
Q 001464 571 YNVCIFAYGQTGSGKTYTMSG 591 (1073)
Q Consensus 571 yN~~IfAYGQTGSGKTyTM~G 591 (1073)
.+..++..|..|||||+||..
T Consensus 12 ~~~~~lV~a~AGSGKT~~l~~ 32 (315)
T PF00580_consen 12 TEGPLLVNAGAGSGKTTTLLE 32 (315)
T ss_dssp -SSEEEEEE-TTSSHHHHHHH
T ss_pred CCCCEEEEeCCCCCchHHHHH
Confidence 667788889999999999865
No 400
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=50.59 E-value=4.6 Score=42.83 Aligned_cols=18 Identities=33% Similarity=0.516 Sum_probs=14.0
Q ss_pred eEEeecccCCCCCeeeec
Q 001464 574 CIFAYGQTGSGKTYTMSG 591 (1073)
Q Consensus 574 ~IfAYGQTGSGKTyTM~G 591 (1073)
.++.+|+||||||.++..
T Consensus 40 h~li~G~tgsGKS~~l~~ 57 (205)
T PF01580_consen 40 HLLIAGATGSGKSTLLRT 57 (205)
T ss_dssp SEEEE--TTSSHHHHHHH
T ss_pred eEEEEcCCCCCccHHHHH
Confidence 679999999999999864
No 401
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=50.54 E-value=10 Score=43.74 Aligned_cols=43 Identities=23% Similarity=0.300 Sum_probs=25.1
Q ss_pred CCCCChHHHHhc-hHHHHHH-hhcCcceeEEeecccCCCCCeeee
Q 001464 548 GPEASQEEVFLD-TRPLIRS-VLDGYNVCIFAYGQTGSGKTYTMS 590 (1073)
Q Consensus 548 ~~~atQeeVf~~-~~pLV~s-vLdGyN~~IfAYGQTGSGKTyTM~ 590 (1073)
-|-+.-+-++++ +..++.. +..+.---.+-||+.|+|||.|..
T Consensus 31 rPkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStal 75 (346)
T KOG0989|consen 31 RPKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTAL 75 (346)
T ss_pred CCCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHH
Confidence 333333444443 3333344 344344456789999999999974
No 402
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=50.54 E-value=4.8e+02 Score=30.70 Aligned_cols=22 Identities=14% Similarity=0.228 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001464 381 IESQKKLQELERLLTVSKKKVE 402 (1073)
Q Consensus 381 ~ele~~l~e~e~~l~~~~~~v~ 402 (1073)
++.|+.+.|++-+.+-++.+++
T Consensus 241 aqvek~i~EfdiEre~LRAel~ 262 (561)
T KOG1103|consen 241 AQVEKLIEEFDIEREFLRAELE 262 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666555555554443
No 403
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=50.54 E-value=5.2 Score=52.10 Aligned_cols=27 Identities=26% Similarity=0.231 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001464 381 IESQKKLQELERLLTVSKKKVEELESL 407 (1073)
Q Consensus 381 ~ele~~l~e~e~~l~~~~~~v~~le~~ 407 (1073)
.+|++..+.|+..+.+++..+++++..
T Consensus 457 ~eLek~kr~LE~e~~El~~~leE~E~~ 483 (859)
T PF01576_consen 457 HELEKAKRRLEQEKEELQEQLEEAEDA 483 (859)
T ss_dssp ---------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566666666666665555543
No 404
>PRK11519 tyrosine kinase; Provisional
Probab=50.48 E-value=3.5e+02 Score=34.93 Aligned_cols=21 Identities=24% Similarity=0.297 Sum_probs=13.9
Q ss_pred cceeEEeecccCCCCCeeeec
Q 001464 571 YNVCIFAYGQTGSGKTYTMSG 591 (1073)
Q Consensus 571 yN~~IfAYGQTGSGKTyTM~G 591 (1073)
.++.+++-...|.|||++-..
T Consensus 526 ~kvi~vts~~~geGKTt~a~n 546 (719)
T PRK11519 526 NNVLMMTGVSPSIGKTFVCAN 546 (719)
T ss_pred ceEEEEECCCCCCCHHHHHHH
Confidence 345555555779999988653
No 405
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=50.26 E-value=5.8e+02 Score=31.53 Aligned_cols=13 Identities=15% Similarity=0.276 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHhc
Q 001464 756 LSALGDVIFALAH 768 (1073)
Q Consensus 756 LsaLg~VI~aLa~ 768 (1073)
..++.+-|..|+.
T Consensus 284 ~~svr~HI~~Ls~ 296 (475)
T PRK10361 284 IASVRNHIRLLGR 296 (475)
T ss_pred HHHHHHHHHHHhh
Confidence 3344444444443
No 406
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=50.23 E-value=8.3 Score=45.15 Aligned_cols=37 Identities=27% Similarity=0.520 Sum_probs=26.7
Q ss_pred CCChHHHHhchHHHHHHhhcCcceeEEeecccCCCCCeee
Q 001464 550 EASQEEVFLDTRPLIRSVLDGYNVCIFAYGQTGSGKTYTM 589 (1073)
Q Consensus 550 ~atQeeVf~~~~pLV~svLdGyN~~IfAYGQTGSGKTyTM 589 (1073)
+..|..+|..+-..+.. .+| ..+|.-|+-|+||||.+
T Consensus 3 n~eQ~~~~~~v~~~~~~-~~~--~~~fv~G~~GtGKs~l~ 39 (364)
T PF05970_consen 3 NEEQRRVFDTVIEAIEN-EEG--LNFFVTGPAGTGKSFLI 39 (364)
T ss_pred CHHHHHHHHHHHHHHHc-cCC--cEEEEEcCCCCChhHHH
Confidence 35688899886433333 344 56688999999999986
No 407
>PRK13342 recombination factor protein RarA; Reviewed
Probab=50.00 E-value=8.3 Score=45.88 Aligned_cols=39 Identities=28% Similarity=0.428 Sum_probs=25.1
Q ss_pred ChHHHHhchHHHHHHhhcCcceeEEeecccCCCCCeeee
Q 001464 552 SQEEVFLDTRPLIRSVLDGYNVCIFAYGQTGSGKTYTMS 590 (1073)
Q Consensus 552 tQeeVf~~~~pLV~svLdGyN~~IfAYGQTGSGKTyTM~ 590 (1073)
.|+.+.....++...+-.+.-..++-||++|+|||++..
T Consensus 16 Gq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~ 54 (413)
T PRK13342 16 GQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLAR 54 (413)
T ss_pred CcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHH
Confidence 345555543334444445555567779999999998764
No 408
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=49.96 E-value=4.2e+02 Score=34.15 Aligned_cols=27 Identities=4% Similarity=-0.312 Sum_probs=17.8
Q ss_pred HHHHchhhHHHHHHHhhhcCCCccCCC
Q 001464 57 LRACLVDGTVLCLVLNKLSPDSVEMGA 83 (1073)
Q Consensus 57 l~~~LrDGviLC~L~N~l~Pgsv~k~~ 83 (1073)
+...++-|...|.-.+..+|+..++..
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 48 (670)
T KOG0239|consen 22 SNPKKRFELARVYSPSVGQPSLFSDVQ 48 (670)
T ss_pred cccccccCccccccccccccccCCccc
Confidence 455666777777777777776665443
No 409
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=49.79 E-value=4.5e+02 Score=30.09 Aligned_cols=32 Identities=25% Similarity=0.489 Sum_probs=22.7
Q ss_pred hCCCCC-CccccccCCCchhHHHHHHHHHhhhh
Q 001464 101 DMGLPR-FELSDLEQGNMAPVLQCLRSLRASFS 132 (1073)
Q Consensus 101 ~~Gvp~-Fe~~DLE~~n~~~Vv~cL~aL~~~~~ 132 (1073)
.+|-|. +...-+-.-||.-|-+||+.|-..++
T Consensus 2 ~LGypr~iSmenFrtPNF~LVAeiL~WLv~ryd 34 (267)
T PF10234_consen 2 ALGYPRLISMENFRTPNFELVAEILRWLVKRYD 34 (267)
T ss_pred CCCCCCCCcHHHcCCCChHHHHHHHHHHHHHcC
Confidence 467777 33333334589999999999987776
No 410
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=49.75 E-value=8.5 Score=46.20 Aligned_cols=26 Identities=35% Similarity=0.572 Sum_probs=20.1
Q ss_pred HHHHHhhcCcceeEEeecccCCCCCeee
Q 001464 562 PLIRSVLDGYNVCIFAYGQTGSGKTYTM 589 (1073)
Q Consensus 562 pLV~svLdGyN~~IfAYGQTGSGKTyTM 589 (1073)
..|..+++|.| +++.++||||||.+.
T Consensus 33 ~ai~~~l~g~d--vi~~a~TGsGKT~a~ 58 (460)
T PRK11776 33 QSLPAILAGKD--VIAQAKTGSGKTAAF 58 (460)
T ss_pred HHHHHHhcCCC--EEEECCCCCcHHHHH
Confidence 34566788988 677889999999763
No 411
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=49.67 E-value=2.2e+02 Score=30.69 Aligned_cols=40 Identities=20% Similarity=0.292 Sum_probs=16.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHhhHHHHHhhhhhHHHHHHHH
Q 001464 433 IQDLRVAFESTKHEVLETKKNYSKEFDCLGLNLKRLIDAA 472 (1073)
Q Consensus 433 l~el~~~~~~~k~ei~~~~~~~~~e~~~l~~~~~~l~~~~ 472 (1073)
+++|+.....++.++......--+.+..+...+..+.+++
T Consensus 112 l~~l~~~~~~l~~el~~~~~~Dp~~i~~~~~~~~~~~~~a 151 (188)
T PF03962_consen 112 LEELKKELKELKKELEKYSENDPEKIEKLKEEIKIAKEAA 151 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 4444444444555544333322233333333333344444
No 412
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=49.67 E-value=4.6 Score=38.79 Aligned_cols=16 Identities=38% Similarity=0.696 Sum_probs=13.9
Q ss_pred EEeecccCCCCCeeee
Q 001464 575 IFAYGQTGSGKTYTMS 590 (1073)
Q Consensus 575 IfAYGQTGSGKTyTM~ 590 (1073)
|+-||++|.|||+.+.
T Consensus 1 I~i~G~~G~GKS~l~~ 16 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAK 16 (107)
T ss_pred CEEECCCCCCHHHHHH
Confidence 5789999999998764
No 413
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=49.63 E-value=5.6 Score=44.95 Aligned_cols=18 Identities=44% Similarity=0.549 Sum_probs=14.6
Q ss_pred eEEeecccCCCCCeeeec
Q 001464 574 CIFAYGQTGSGKTYTMSG 591 (1073)
Q Consensus 574 ~IfAYGQTGSGKTyTM~G 591 (1073)
.|.-.|+||+|||+|+..
T Consensus 196 vi~~vGptGvGKTTt~~k 213 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLAK 213 (282)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 445569999999999865
No 414
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=49.40 E-value=6.2 Score=38.82 Aligned_cols=15 Identities=40% Similarity=0.578 Sum_probs=13.4
Q ss_pred EEeecccCCCCCeee
Q 001464 575 IFAYGQTGSGKTYTM 589 (1073)
Q Consensus 575 IfAYGQTGSGKTyTM 589 (1073)
|+.+|.+|||||+..
T Consensus 2 ii~~G~pgsGKSt~a 16 (143)
T PF13671_consen 2 IILCGPPGSGKSTLA 16 (143)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 789999999999864
No 415
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=49.34 E-value=6.2e+02 Score=31.90 Aligned_cols=148 Identities=15% Similarity=0.177 Sum_probs=0.0
Q ss_pred CCCcchHHHHHHHHHhHhhhhcCCCCc---hHHHHHHHHHHHHHHHHhhhhhHHHhhhhhHHHhhHHHHHHHHHHHhhhh
Q 001464 226 NASTKSLFNIVNRILDECVERKNGDAP---HRVACLLRKVVPLIERRTATQYQNFKNQNNLFRAREEKYKSRIRVLETLT 302 (1073)
Q Consensus 226 ~~~~~~l~~~~~~~l~~~~~~~~~~~~---~~~~~~l~kvv~e~e~ris~q~~~~~~q~~~~~~~~~~~~~~~~~le~l~ 302 (1073)
...+-+++..+...+... ..-.+++ .-+..+|....-++ ..++.+..+.-..++.--.+-+...+|+..|..|+
T Consensus 237 e~~~~~~~~~l~~a~~~l--~~~~~~d~~l~~~~~~l~ea~~~l-~ea~~el~~~~~~le~Dp~~L~~ve~Rl~~L~~l~ 313 (557)
T COG0497 237 EDDTVSALSLLGRALEAL--EDLSEYDGKLSELAELLEEALYEL-EEASEELRAYLDELEFDPNRLEEVEERLFALKSLA 313 (557)
T ss_pred CCCchhHHHHHHHHHHHH--HHhhccChhHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Q ss_pred ccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001464 303 VGTTEENQVVANQLERIKTEKTNIAQKEKLEEQNALRLKKENDDRDIEISTLKQDLELAKRTHELHCLQLEEQIYETKIE 382 (1073)
Q Consensus 303 ~~~~ee~~~~~~~l~~l~~e~~k~eek~~~~e~~~~~l~ke~e~~~~e~~~Lk~ele~~k~~~e~~~~~le~~~~~~k~e 382 (1073)
......++.+..+.++++.|.+.++. .+....+|..++..++..|.+.+..|-..+++.=.+
T Consensus 314 RKY~~~~~~l~~~~~~~~~el~~L~~------------------~~~~~~~Le~~~~~l~~~~~~~A~~Ls~~R~~~A~~ 375 (557)
T COG0497 314 RKYGVTIEDLLEYLDKIKEELAQLDN------------------SEESLEALEKEVKKLKAELLEAAEALSAIRKKAAKE 375 (557)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhhh------------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHH
Q 001464 383 SQKKLQELERLL 394 (1073)
Q Consensus 383 le~~l~e~e~~l 394 (1073)
|++.+...=..|
T Consensus 376 L~~~v~~eL~~L 387 (557)
T COG0497 376 LEKEVTAELKAL 387 (557)
T ss_pred HHHHHHHHHHhc
No 416
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=49.34 E-value=6.3e+02 Score=32.67 Aligned_cols=20 Identities=30% Similarity=0.426 Sum_probs=12.4
Q ss_pred ceeEEeecccCCCCCeeeec
Q 001464 572 NVCIFAYGQTGSGKTYTMSG 591 (1073)
Q Consensus 572 N~~IfAYGQTGSGKTyTM~G 591 (1073)
.+..++-...|.|||++-..
T Consensus 532 kvI~vtS~~~g~GKTtva~n 551 (726)
T PRK09841 532 NILMITGATPDSGKTFVSST 551 (726)
T ss_pred eEEEEecCCCCCCHHHHHHH
Confidence 33334444559999988654
No 417
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=49.06 E-value=8.3 Score=47.48 Aligned_cols=32 Identities=25% Similarity=0.501 Sum_probs=25.0
Q ss_pred chHHHHHHhhcCcc--eeEEeecccCCCCCeeee
Q 001464 559 DTRPLIRSVLDGYN--VCIFAYGQTGSGKTYTMS 590 (1073)
Q Consensus 559 ~~~pLV~svLdGyN--~~IfAYGQTGSGKTyTM~ 590 (1073)
+++..++..+.|.. ..++.+||+|+|||.|+.
T Consensus 30 eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~ 63 (519)
T PF03215_consen 30 EVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVK 63 (519)
T ss_pred HHHHHHHHHhccCCCcceEEEECCCCCCHHHHHH
Confidence 35777887776654 457889999999999984
No 418
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=49.00 E-value=9.1e+02 Score=33.43 Aligned_cols=18 Identities=17% Similarity=0.379 Sum_probs=12.3
Q ss_pred hhhccCCCcceeeEEecCCC
Q 001464 784 LQSSLGGQAKTLMMVQLNPD 803 (1073)
Q Consensus 784 LqdSLGGnsKTlmI~~ISP~ 803 (1073)
|-++||+||.. |+-.-|.
T Consensus 1200 LAEtf~snCgv--LALDEPT 1217 (1294)
T KOG0962|consen 1200 LAETFGSNCGV--LALDEPT 1217 (1294)
T ss_pred HHHHHhhcccc--ccccCCc
Confidence 77899999984 4444454
No 419
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=48.98 E-value=2.8e+02 Score=36.26 Aligned_cols=19 Identities=11% Similarity=-0.038 Sum_probs=12.4
Q ss_pred CchhHHHHHHHHHhhhhcc
Q 001464 116 NMAPVLQCLRSLRASFSFC 134 (1073)
Q Consensus 116 n~~~Vv~cL~aL~~~~~~k 134 (1073)
+.-.-++|+.|+..|+...
T Consensus 265 ~~l~~lD~l~a~a~~a~~~ 283 (771)
T TIGR01069 265 KEFDFLDSLQARARYAKAV 283 (771)
T ss_pred HHHHHHHHHHHHHHHHHHC
Confidence 3444567888887777653
No 420
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=48.97 E-value=1.8e+02 Score=26.85 Aligned_cols=66 Identities=20% Similarity=0.243 Sum_probs=40.8
Q ss_pred hhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001464 341 KKENDDRDIEISTLKQDLELAKRTHELHCLQLEEQIYETKIESQKKLQELERLLTVSKKKVEELESL 407 (1073)
Q Consensus 341 ~ke~e~~~~e~~~Lk~ele~~k~~~e~~~~~le~~~~~~k~ele~~l~e~e~~l~~~~~~v~~le~~ 407 (1073)
+.+.+.....|..++..++.++..|.......... ...+.+++.-..+........+.+|+.+++.
T Consensus 6 ~~~v~~i~~~i~~i~~~~~~l~~l~~~~l~~~~~d-~~~~~el~~l~~~i~~~~~~~~~~lk~l~~~ 71 (103)
T PF00804_consen 6 FDEVQEIREDIDKIKEKLNELRKLHKKILSSPDQD-SELKRELDELTDEIKQLFQKIKKRLKQLSKD 71 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555667777777777777777665544422 3455666666666666666677777666554
No 421
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=48.72 E-value=7.1e+02 Score=32.11 Aligned_cols=43 Identities=28% Similarity=0.294 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001464 353 TLKQDLELAKRTHELHCLQLEEQIYETKIESQKKLQELERLLT 395 (1073)
Q Consensus 353 ~Lk~ele~~k~~~e~~~~~le~~~~~~k~ele~~l~e~e~~l~ 395 (1073)
..++||+.+.+.|+.+...|...-.+.-..|..+..+++..|.
T Consensus 137 ~~q~ELee~q~~Hqeql~~Lt~aHq~~l~sL~~k~~~Le~~L~ 179 (739)
T PF07111_consen 137 GSQRELEEAQRLHQEQLSSLTQAHQEALASLTSKAEELEKSLE 179 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777766666655544444444444444444443
No 422
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=48.67 E-value=5.8 Score=47.98 Aligned_cols=66 Identities=29% Similarity=0.442 Sum_probs=41.2
Q ss_pred HHHhhcCcceeEEeecccCCCCCeeeecCCC---------C-CCCccchhHH---------HHHHHHHHHHhccCCceEE
Q 001464 564 IRSVLDGYNVCIFAYGQTGSGKTYTMSGPCI---------S-STEDWGVNYR---------ALNDLFEISESRKNSILYE 624 (1073)
Q Consensus 564 V~svLdGyN~~IfAYGQTGSGKTyTM~G~~~---------~-~~~~~GIipR---------al~~LF~~~~~~~~~~~~~ 624 (1073)
|..+.+|.+. +|++|||||||+...+|-. . .....|..|+ .+.+||.... ...|.
T Consensus 105 ip~i~~Grdl--~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~----k~~~~ 178 (482)
T KOG0335|consen 105 IPIISGGRDL--MACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNEAR----KFSYL 178 (482)
T ss_pred cceeecCCce--EEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHHHH----hhccc
Confidence 4555667665 8999999999999987510 0 0011111222 3566776554 34566
Q ss_pred EEEEEEEEecc
Q 001464 625 VGVQMVEIYNE 635 (1073)
Q Consensus 625 V~vS~lEIYnE 635 (1073)
-.+-.+.+|+.
T Consensus 179 s~~~~~~~ygg 189 (482)
T KOG0335|consen 179 SGMKSVVVYGG 189 (482)
T ss_pred ccceeeeeeCC
Confidence 77778888976
No 423
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=48.63 E-value=5.8 Score=46.33 Aligned_cols=30 Identities=27% Similarity=0.470 Sum_probs=21.1
Q ss_pred HHHHHHhhcCcceeEEeecccCCCCCeeeec
Q 001464 561 RPLIRSVLDGYNVCIFAYGQTGSGKTYTMSG 591 (1073)
Q Consensus 561 ~pLV~svLdGyN~~IfAYGQTGSGKTyTM~G 591 (1073)
..++..++.+ ...|+..|+||||||++|-.
T Consensus 152 ~~~l~~~v~~-~~nilI~G~tGSGKTTll~a 181 (344)
T PRK13851 152 EAFLHACVVG-RLTMLLCGPTGSGKTTMSKT 181 (344)
T ss_pred HHHHHHHHHc-CCeEEEECCCCccHHHHHHH
Confidence 4555555532 34477899999999999854
No 424
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=48.53 E-value=5.2e+02 Score=30.46 Aligned_cols=13 Identities=15% Similarity=0.117 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHh
Q 001464 604 YRALNDLFEISES 616 (1073)
Q Consensus 604 pRal~~LF~~~~~ 616 (1073)
...++.||+.+.+
T Consensus 282 sLdcRrLfDsLre 294 (401)
T PF06785_consen 282 SLDCRRLFDSLRE 294 (401)
T ss_pred hHHHHHHHhhhcc
Confidence 3456667765543
No 425
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=48.41 E-value=3.1e+02 Score=31.86 Aligned_cols=16 Identities=19% Similarity=0.260 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 001464 351 ISTLKQDLELAKRTHE 366 (1073)
Q Consensus 351 ~~~Lk~ele~~k~~~e 366 (1073)
+..||.+|..+..+|.
T Consensus 79 ~r~lk~~l~evEekyr 94 (302)
T PF09738_consen 79 LRDLKDSLAEVEEKYR 94 (302)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444555555554444
No 426
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=47.95 E-value=8.3 Score=44.82 Aligned_cols=29 Identities=21% Similarity=0.242 Sum_probs=20.6
Q ss_pred HHHHHHhhcCcceeEEeecccCCCCCeeee
Q 001464 561 RPLIRSVLDGYNVCIFAYGQTGSGKTYTMS 590 (1073)
Q Consensus 561 ~pLV~svLdGyN~~IfAYGQTGSGKTyTM~ 590 (1073)
..++..++.+. ..|+..|.||||||.+|-
T Consensus 150 ~~~L~~~v~~~-~nili~G~tgSGKTTll~ 178 (332)
T PRK13900 150 KEFLEHAVISK-KNIIISGGTSTGKTTFTN 178 (332)
T ss_pred HHHHHHHHHcC-CcEEEECCCCCCHHHHHH
Confidence 45555555432 347789999999999884
No 427
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=47.76 E-value=6e+02 Score=30.93 Aligned_cols=42 Identities=14% Similarity=0.014 Sum_probs=20.6
Q ss_pred HhHHhHHHhhHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHhh
Q 001464 420 HSYQSFMGCQLGVIQDLRVAFESTKHEVLETKKNYSKEFDCL 461 (1073)
Q Consensus 420 ~~~~~~l~~Q~~~l~el~~~~~~~k~ei~~~~~~~~~e~~~l 461 (1073)
.+++...+.+....|.+...++.++..+...|+.|......|
T Consensus 321 arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~L 362 (502)
T KOG0982|consen 321 ARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDIL 362 (502)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444555555555555555554443333
No 428
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=47.18 E-value=17 Score=40.34 Aligned_cols=42 Identities=29% Similarity=0.309 Sum_probs=28.6
Q ss_pred eCCCCChHHHHhchHHHHHHhhc-C-cceeEEeecccCCCCCee
Q 001464 547 FGPEASQEEVFLDTRPLIRSVLD-G-YNVCIFAYGQTGSGKTYT 588 (1073)
Q Consensus 547 F~~~atQeeVf~~~~pLV~svLd-G-yN~~IfAYGQTGSGKTyT 588 (1073)
|+.-..|+.+-...+.+++.+.. | .=..++-||+.|.|||..
T Consensus 23 L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTL 66 (233)
T PF05496_consen 23 LDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTL 66 (233)
T ss_dssp CCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHH
T ss_pred HHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHH
Confidence 34456688888888888888764 2 234578899999999754
No 429
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=47.15 E-value=7 Score=37.29 Aligned_cols=15 Identities=47% Similarity=0.419 Sum_probs=13.1
Q ss_pred EEeecccCCCCCeee
Q 001464 575 IFAYGQTGSGKTYTM 589 (1073)
Q Consensus 575 IfAYGQTGSGKTyTM 589 (1073)
|+-.|.+|||||+..
T Consensus 1 I~i~G~~GsGKtTia 15 (129)
T PF13238_consen 1 IGISGIPGSGKTTIA 15 (129)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred CEEECCCCCCHHHHH
Confidence 678999999999875
No 430
>cd07676 F-BAR_FBP17 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Formin Binding Protein 17 (FBP17), also called FormiN Binding Protein 1 (FNBP1), is involved in dynamin-mediated endocytosis. It is recruited to clathrin-coated pits late in the endocytosis process and may play a role in the invagination and scission steps. FBP17 binds in vivo to tankyrase, a protein involved in telomere maintenance and mitogen activated protein kinase (MAPK) signaling. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=46.52 E-value=4.7e+02 Score=29.43 Aligned_cols=28 Identities=29% Similarity=0.353 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001464 349 IEISTLKQDLELAKRTHELHCLQLEEQI 376 (1073)
Q Consensus 349 ~e~~~Lk~ele~~k~~~e~~~~~le~~~ 376 (1073)
......-.+|+.+|+.|..-|.+.|...
T Consensus 121 k~~~~~~~~lekaKk~Y~~acke~E~A~ 148 (253)
T cd07676 121 QHIETCWKQLESSKRRFERDCKEADRAQ 148 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555667777777887777766543
No 431
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=46.29 E-value=7.5 Score=40.84 Aligned_cols=17 Identities=29% Similarity=0.352 Sum_probs=14.7
Q ss_pred eeEEeecccCCCCCeee
Q 001464 573 VCIFAYGQTGSGKTYTM 589 (1073)
Q Consensus 573 ~~IfAYGQTGSGKTyTM 589 (1073)
+.++-+|+||+|||++.
T Consensus 4 ~~~ll~GpsGvGKT~la 20 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELA 20 (171)
T ss_dssp EEEEEESSTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 46889999999999965
No 432
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=46.19 E-value=16 Score=44.19 Aligned_cols=95 Identities=20% Similarity=0.257 Sum_probs=44.0
Q ss_pred EEEEeecCCCCCccc-CCCccEEEEccCCEEEEeCCCCCC-------CCCceeeeeceeeCCCCChHHHHhch-HHHHHH
Q 001464 496 IRVYCRIRPFLPGQS-KKQTTIEYIGENGELVVSNPLKQG-------KDNHRLFKFNKVFGPEASQEEVFLDT-RPLIRS 566 (1073)
Q Consensus 496 IRV~~RVRP~l~~e~-~~~~~v~~~~~~~~l~v~~p~~~~-------~~~~k~F~FD~VF~~~atQeeVf~~~-~pLV~s 566 (1073)
-..+++|.++...+. ...+.+......+.++-.-|.... ......-+|+-|.+-+..-+++.+.+ .|+...
T Consensus 127 ~~~~~~~~~~~~~~~l~~~~~v~l~~~~~~~~~~~~~~~d~~~~~~~~~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p 206 (438)
T PTZ00361 127 PEYYVNILSFVDKEQLEPGCSVLLHNKTHSVVGILLDEVDPLVSVMKVDKAPLESYADIGGLEQQIQEIKEAVELPLTHP 206 (438)
T ss_pred CEEEEeccCcCCHhhCCCCCEEEEcCCCCceEecCccccchhhhhcccccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCH
Confidence 467889888876543 334444444333433322221110 00111134444433333333333332 233221
Q ss_pred -hhc--Cc--ceeEEeecccCCCCCeeee
Q 001464 567 -VLD--GY--NVCIFAYGQTGSGKTYTMS 590 (1073)
Q Consensus 567 -vLd--Gy--N~~IfAYGQTGSGKTyTM~ 590 (1073)
.+. |. ...|+-||++|+|||++.-
T Consensus 207 ~~~~~~gi~~p~gVLL~GPPGTGKT~LAr 235 (438)
T PTZ00361 207 ELYDDIGIKPPKGVILYGPPGTGKTLLAK 235 (438)
T ss_pred HHHHhcCCCCCcEEEEECCCCCCHHHHHH
Confidence 111 22 2347789999999998763
No 433
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=45.98 E-value=10 Score=45.06 Aligned_cols=26 Identities=35% Similarity=0.571 Sum_probs=20.8
Q ss_pred HHHHHhhcCcceeEEeecccCCCCCeee
Q 001464 562 PLIRSVLDGYNVCIFAYGQTGSGKTYTM 589 (1073)
Q Consensus 562 pLV~svLdGyN~~IfAYGQTGSGKTyTM 589 (1073)
..|..+++|-| +++.++||||||.+.
T Consensus 30 ~ai~~~~~g~d--~l~~apTGsGKT~~~ 55 (434)
T PRK11192 30 EAIPPALDGRD--VLGSAPTGTGKTAAF 55 (434)
T ss_pred HHHHHHhCCCC--EEEECCCCChHHHHH
Confidence 34566788887 788899999999873
No 434
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=45.98 E-value=7.9e+02 Score=31.84 Aligned_cols=31 Identities=16% Similarity=0.313 Sum_probs=15.0
Q ss_pred eeeeceeeCCCCChHHHHhchHHHHHHhhcCcce
Q 001464 540 LFKFNKVFGPEASQEEVFLDTRPLIRSVLDGYNV 573 (1073)
Q Consensus 540 ~F~FD~VF~~~atQeeVf~~~~pLV~svLdGyN~ 573 (1073)
.|.|+.+.+|..-+.. ...-+++.-|+|.|.
T Consensus 348 ~hs~~dl~~psG~~a~---~lAmmlq~~ldain~ 378 (916)
T KOG0249|consen 348 LHSSADLLSPSGASAQ---TLAMMLQEQLDAINK 378 (916)
T ss_pred hhccccccCcchhhhh---hhhhhcccCCCcccc
Confidence 4666666666554411 113344444555554
No 435
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=45.95 E-value=3.6e+02 Score=35.25 Aligned_cols=36 Identities=17% Similarity=0.398 Sum_probs=23.3
Q ss_pred chHHHHHHh-hcCcceeEEeecccCCCCCeeeecCCCCCCCccchhHHHHHHHHH
Q 001464 559 DTRPLIRSV-LDGYNVCIFAYGQTGSGKTYTMSGPCISSTEDWGVNYRALNDLFE 612 (1073)
Q Consensus 559 ~~~pLV~sv-LdGyN~~IfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~ 612 (1073)
.+...|+.+ +.|+.+..+-.|- | .|++-+++.+.+.
T Consensus 720 ~l~~fl~~a~~~g~~~v~IIHGk----------G--------tG~Lr~~v~~~L~ 756 (782)
T PRK00409 720 RLDKYLDDALLAGYGEVLIIHGK----------G--------TGKLRKGVQEFLK 756 (782)
T ss_pred HHHHHHHHHHHcCCCEEEEEcCC----------C--------hhHHHHHHHHHHc
Confidence 334445444 4788888877763 3 2788888877665
No 436
>PRK04195 replication factor C large subunit; Provisional
Probab=45.84 E-value=13 Score=45.29 Aligned_cols=33 Identities=33% Similarity=0.452 Sum_probs=23.6
Q ss_pred hchHHHHHHhhcCc-ceeEEeecccCCCCCeeee
Q 001464 558 LDTRPLIRSVLDGY-NVCIFAYGQTGSGKTYTMS 590 (1073)
Q Consensus 558 ~~~~pLV~svLdGy-N~~IfAYGQTGSGKTyTM~ 590 (1073)
.....++.....|. .-.++-||++|+|||++..
T Consensus 24 ~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ 57 (482)
T PRK04195 24 EQLREWIESWLKGKPKKALLLYGPPGVGKTSLAH 57 (482)
T ss_pred HHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHH
Confidence 33455566655665 4568889999999998763
No 437
>PRK13764 ATPase; Provisional
Probab=45.57 E-value=8.7 Score=48.08 Aligned_cols=20 Identities=25% Similarity=0.338 Sum_probs=16.7
Q ss_pred ceeEEeecccCCCCCeeeec
Q 001464 572 NVCIFAYGQTGSGKTYTMSG 591 (1073)
Q Consensus 572 N~~IfAYGQTGSGKTyTM~G 591 (1073)
...|+..|+||||||+++..
T Consensus 257 ~~~ILIsG~TGSGKTTll~A 276 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQA 276 (602)
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 34489999999999999854
No 438
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=45.55 E-value=57 Score=42.25 Aligned_cols=16 Identities=31% Similarity=0.341 Sum_probs=13.5
Q ss_pred eEEeecccCCCCCeee
Q 001464 574 CIFAYGQTGSGKTYTM 589 (1073)
Q Consensus 574 ~IfAYGQTGSGKTyTM 589 (1073)
.++-||++|+|||+..
T Consensus 349 ~lll~GppG~GKT~lA 364 (775)
T TIGR00763 349 ILCLVGPPGVGKTSLG 364 (775)
T ss_pred eEEEECCCCCCHHHHH
Confidence 4777999999999765
No 439
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=45.54 E-value=4.3e+02 Score=28.64 Aligned_cols=18 Identities=39% Similarity=0.523 Sum_probs=8.1
Q ss_pred ccchhHHHHHHHHHHHHH
Q 001464 344 NDDRDIEISTLKQDLELA 361 (1073)
Q Consensus 344 ~e~~~~e~~~Lk~ele~~ 361 (1073)
++..+.||+.|+-..+.+
T Consensus 154 ke~~~~ei~~lks~~~~l 171 (190)
T PF05266_consen 154 KEAKDKEISRLKSEAEAL 171 (190)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444555544444333
No 440
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=45.54 E-value=8.7e+02 Score=32.20 Aligned_cols=40 Identities=25% Similarity=0.402 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHhhHHHHHhhhhhHHHHHHHHHHHH
Q 001464 433 IQDLRVAFESTKHEVLETKKNYSKEFDCLGLNLKRLIDAAEKYH 476 (1073)
Q Consensus 433 l~el~~~~~~~k~ei~~~~~~~~~e~~~l~~~~~~l~~~~~~y~ 476 (1073)
..+|+....+++.++..+-+.|.. |..-.+-+.++.+.|+
T Consensus 813 ~a~lr~~~~slk~~l~e~ar~Was----l~~~~~vl~e~l~~~k 852 (984)
T COG4717 813 VAELRQRRESLKEDLEEKARKWAS----LRLAVQVLEEALRLFK 852 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 346777777788888887777753 3333344455555554
No 441
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=45.40 E-value=6.2 Score=38.94 Aligned_cols=16 Identities=31% Similarity=0.534 Sum_probs=13.9
Q ss_pred EEeecccCCCCCeeee
Q 001464 575 IFAYGQTGSGKTYTMS 590 (1073)
Q Consensus 575 IfAYGQTGSGKTyTM~ 590 (1073)
|+-+|++|+|||+.+.
T Consensus 2 vlL~G~~G~GKt~l~~ 17 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLAR 17 (139)
T ss_dssp EEEEESSSSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6889999999998764
No 442
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=45.10 E-value=15 Score=46.69 Aligned_cols=36 Identities=28% Similarity=0.401 Sum_probs=27.9
Q ss_pred HHHHhchHHHHHHhh-cCcceeEEeecccCCCCCeee
Q 001464 554 EEVFLDTRPLIRSVL-DGYNVCIFAYGQTGSGKTYTM 589 (1073)
Q Consensus 554 eeVf~~~~pLV~svL-dGyN~~IfAYGQTGSGKTyTM 589 (1073)
--||.-+......++ .|.|-||+.-|.+|||||.|.
T Consensus 73 PHifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 109 (677)
T cd01383 73 PHVYAIADTAYNEMMRDEVNQSIIISGESGAGKTETA 109 (677)
T ss_pred CCHHHHHHHHHHHHHHcCCCceEEEecCCCCCcchHH
Confidence 347766554455544 599999999999999999986
No 443
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=44.44 E-value=7.4 Score=49.67 Aligned_cols=14 Identities=14% Similarity=0.278 Sum_probs=9.2
Q ss_pred hHHHHHHHHHHhcC
Q 001464 31 QLSTLVEWLNEMIP 44 (1073)
Q Consensus 31 r~~e~~~Wie~vlg 44 (1073)
.-.-+..++..++|
T Consensus 75 l~~~i~~yy~e~L~ 88 (713)
T PF05622_consen 75 LLRNIKSYYQEELG 88 (713)
T ss_dssp HHHHHHHHHHTTT-
T ss_pred HHHHHHHHHHHHcC
Confidence 44567778888887
No 444
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=44.42 E-value=5.5e+02 Score=31.30 Aligned_cols=140 Identities=12% Similarity=0.107 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHhh-h
Q 001464 350 EISTLKQDLELAKRTHELHCLQLEEQIYETKIES-------------------QKKLQELERLLTVSKKKVEELESLS-E 409 (1073)
Q Consensus 350 e~~~Lk~ele~~k~~~e~~~~~le~~~~~~k~el-------------------e~~l~e~e~~l~~~~~~v~~le~~~-~ 409 (1073)
|+..|+.+|..+++.|.....+........+.+. +.-.+.+...-..+-.+|.+|+..- +
T Consensus 152 Ev~~LRreLavLRQl~~~~~~~~~~~i~~i~~ki~~~k~~s~~~~~~~~R~~~~~~k~~L~~~sd~Ll~kVdDLQD~VE~ 231 (424)
T PF03915_consen 152 EVQSLRRELAVLRQLYSEFQSEVKESISSIREKIKKVKSASTNASGDSNRAYMESGKKKLSEESDRLLTKVDDLQDLVED 231 (424)
T ss_dssp ------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhHHHHHHHHhHHhHHHhhHHHHHHHHHHHHHhHHHHHHH----HHhhHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhh
Q 001464 410 SKSQRWKRIEHSYQSFMGCQLGVIQDLRVAFESTKHEVLET----KKNYSKEFDCLGLNLKRLIDAAEKYHVILAENRRL 485 (1073)
Q Consensus 410 ~~~~~~~~~~~~~~~~l~~Q~~~l~el~~~~~~~k~ei~~~----~~~~~~e~~~l~~~~~~l~~~~~~y~~~l~erRkL 485 (1073)
.+.+..+....--...|+.=...+..+...+..++.-|... ++.|..|++..-..-+-|....+........-+++
T Consensus 232 LRkDV~~RgvRp~~~qle~v~kdi~~a~~~L~~m~~~i~~~kp~WkKiWE~EL~~V~eEQqfL~~QedL~~DL~eDl~k~ 311 (424)
T PF03915_consen 232 LRKDVVQRGVRPSPKQLETVAKDISRASKELKKMKEYIKTEKPIWKKIWESELQKVCEEQQFLKLQEDLLSDLKEDLKKA 311 (424)
T ss_dssp HHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhh
Q 001464 486 YNEV 489 (1073)
Q Consensus 486 ~N~v 489 (1073)
-+.+
T Consensus 312 ~etf 315 (424)
T PF03915_consen 312 SETF 315 (424)
T ss_dssp HHHH
T ss_pred HHHH
No 445
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=44.30 E-value=6.2e+02 Score=30.13 Aligned_cols=32 Identities=9% Similarity=0.294 Sum_probs=13.9
Q ss_pred HHHHhHHHHHHHHHhhHHHHHhhhhhHHHHHH
Q 001464 439 AFESTKHEVLETKKNYSKEFDCLGLNLKRLID 470 (1073)
Q Consensus 439 ~~~~~k~ei~~~~~~~~~e~~~l~~~~~~l~~ 470 (1073)
.+..++.-|..++..+.+-...+...++.|..
T Consensus 351 ~l~~~~~~L~~ve~~~~~N~~~i~~n~~~le~ 382 (388)
T PF04912_consen 351 QLKKWEELLNKVEEKFKENMETIEKNVKKLEE 382 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444443
No 446
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=44.28 E-value=3.4e+02 Score=30.17 Aligned_cols=18 Identities=22% Similarity=0.183 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001464 383 SQKKLQELERLLTVSKKK 400 (1073)
Q Consensus 383 le~~l~e~e~~l~~~~~~ 400 (1073)
|++.++-+..+..+++++
T Consensus 182 LeE~~~~l~~ev~~L~~r 199 (290)
T COG4026 182 LEEMLKKLPGEVYDLKKR 199 (290)
T ss_pred HHHHHHhchhHHHHHHHH
Confidence 333333333333333333
No 447
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=44.26 E-value=1.6e+02 Score=35.92 Aligned_cols=12 Identities=25% Similarity=0.451 Sum_probs=7.8
Q ss_pred eeeeeceeeCCC
Q 001464 539 RLFKFNKVFGPE 550 (1073)
Q Consensus 539 k~F~FD~VF~~~ 550 (1073)
..|.|-.-|++.
T Consensus 194 ~~~~fpt~f~~~ 205 (472)
T TIGR03752 194 SKFSFPTSFDNA 205 (472)
T ss_pred CcccCccccccc
Confidence 457777777644
No 448
>PHA00729 NTP-binding motif containing protein
Probab=44.15 E-value=15 Score=40.67 Aligned_cols=30 Identities=23% Similarity=0.293 Sum_probs=21.2
Q ss_pred HHHHHhhcCcceeEEeecccCCCCCeeeec
Q 001464 562 PLIRSVLDGYNVCIFAYGQTGSGKTYTMSG 591 (1073)
Q Consensus 562 pLV~svLdGyN~~IfAYGQTGSGKTyTM~G 591 (1073)
.+++.+..|-=..|+.+|.+|+||||....
T Consensus 7 ~~~~~l~~~~f~nIlItG~pGvGKT~LA~a 36 (226)
T PHA00729 7 KIVSAYNNNGFVSAVIFGKQGSGKTTYALK 36 (226)
T ss_pred HHHHHHhcCCeEEEEEECCCCCCHHHHHHH
Confidence 345555433334799999999999997654
No 449
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=43.90 E-value=8.8e+02 Score=31.82 Aligned_cols=19 Identities=21% Similarity=0.242 Sum_probs=10.5
Q ss_pred HhhhhhhhhhhccCCEEEE
Q 001464 481 ENRRLYNEVQDLKGNIRVY 499 (1073)
Q Consensus 481 erRkL~N~vqeLKGnIRV~ 499 (1073)
|+-+|-..|++-.|+-+|-
T Consensus 1100 EieklndkIkdnne~~QVg 1118 (1424)
T KOG4572|consen 1100 EIEKLNDKIKDNNEGDQVG 1118 (1424)
T ss_pred HHHHHHHHhhcCCCcchHH
Confidence 4455555566666655553
No 450
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=43.55 E-value=1.8e+02 Score=32.97 Aligned_cols=16 Identities=38% Similarity=0.708 Sum_probs=13.2
Q ss_pred ceeEEeecccCCCCCe
Q 001464 572 NVCIFAYGQTGSGKTY 587 (1073)
Q Consensus 572 N~~IfAYGQTGSGKTy 587 (1073)
---++.||+.|+|||.
T Consensus 181 PKGvlLygppgtGktL 196 (404)
T KOG0728|consen 181 PKGVLLYGPPGTGKTL 196 (404)
T ss_pred CcceEEecCCCCchhH
Confidence 3458999999999984
No 451
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=43.50 E-value=8.5e+02 Score=31.48 Aligned_cols=194 Identities=18% Similarity=0.178 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhhhHHHhhhhhHHHhhHHHHHHHHHHHhhhhccchhhHHHHHHHHHH-HHHHhhhH---HHHHHHHH
Q 001464 259 LRKVVPLIERRTATQYQNFKNQNNLFRAREEKYKSRIRVLETLTVGTTEENQVVANQLER-IKTEKTNI---AQKEKLEE 334 (1073)
Q Consensus 259 l~kvv~e~e~ris~q~~~~~~q~~~~~~~~~~~~~~~~~le~l~~~~~ee~~~~~~~l~~-l~~e~~k~---eek~~~~e 334 (1073)
+-+.++++=||.....-.++.+-.+- +|+|-.....+++.++..-.. |+.|.-++ +||-...=
T Consensus 817 ~~~q~Eq~~rrFeqE~~~kkr~~d~E-------------menlErqQkq~iE~~Eq~h~~rlR~eakRir~EQekd~~~F 883 (1187)
T KOG0579|consen 817 GIKQVEQQARRFEQEQTNKKRTSDLE-------------MENLERQQKQEIEDTEQAHEHRLRNEAKRIRIEQEKDMRAF 883 (1187)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q ss_pred HHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhh-hhhh
Q 001464 335 QNALRLKKENDDRDIEISTLKQDLELAKRTHELHCLQLEEQIYETKIESQKKLQE-LERLLTVSKKKVEELESLS-ESKS 412 (1073)
Q Consensus 335 ~~~~~l~ke~e~~~~e~~~Lk~ele~~k~~~e~~~~~le~~~~~~k~ele~~l~e-~e~~l~~~~~~v~~le~~~-~~~~ 412 (1073)
++..+.++.....+.+.-.-.|.-+.+|+.-|++..+-+-+.++.-.++.+.+.- ++...++.+.++...|... -.|.
T Consensus 884 qe~LK~~kKe~k~e~~~l~k~qrkdalkqr~eq~~~~~ql~ekdFv~kqqq~le~~lkrm~~~~k~ema~iErecLm~Kq 963 (1187)
T KOG0579|consen 884 QERLKQEKKEFKQELTMLSKVQRKDALKQRKEQIEIEHQLKEKDFVMKQQQNLEAMLKRMAEKHKEEMASIERECLMQKQ 963 (1187)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q ss_pred HHHHHHHHhHHhHHHhhHHH-----HHHHHHHHHHhHHHHHHHHHhhHHHHHhhhhhH
Q 001464 413 QRWKRIEHSYQSFMGCQLGV-----IQDLRVAFESTKHEVLETKKNYSKEFDCLGLNL 465 (1073)
Q Consensus 413 ~~~~~~~~~~~~~l~~Q~~~-----l~el~~~~~~~k~ei~~~~~~~~~e~~~l~~~~ 465 (1073)
+.+...+..+-.+=+.|.+. -|.|+...--.++++++....-.+++.++...+
T Consensus 964 ~LlRarEaaiWElEe~qlqEkhqL~kqqlKDqYflqRhqlL~rHekE~eQmqrynQr~ 1021 (1187)
T KOG0579|consen 964 NLLRAREAAIWELEEKQLQEKHQLHKQQLKDQYFLQRHQLLARHEKEMEQMQRYNQRE 1021 (1187)
T ss_pred HHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 452
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=43.47 E-value=13 Score=47.06 Aligned_cols=31 Identities=26% Similarity=0.250 Sum_probs=21.8
Q ss_pred hHHHHHHhhc-----CcceeEEeecccCCCCCeeeec
Q 001464 560 TRPLIRSVLD-----GYNVCIFAYGQTGSGKTYTMSG 591 (1073)
Q Consensus 560 ~~pLV~svLd-----GyN~~IfAYGQTGSGKTyTM~G 591 (1073)
+..+++++.. |.+..|+.. +||||||+||..
T Consensus 247 v~~~~~~~~~~~~~~~~~~gli~~-~TGsGKT~t~~~ 282 (667)
T TIGR00348 247 VKKIVESITRKTWGKDERGGLIWH-TQGSGKTLTMLF 282 (667)
T ss_pred HHHHHHHHHhcccCCCCceeEEEE-ecCCCccHHHHH
Confidence 5666777665 344555444 999999999975
No 453
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=43.46 E-value=13 Score=43.76 Aligned_cols=80 Identities=23% Similarity=0.407 Sum_probs=43.9
Q ss_pred eeceeeCCCCChHHHHhch-HHHHHH-hhc--Ccc--eeEEeecccCCCCCeeeecCCCCC-------------CCccch
Q 001464 542 KFNKVFGPEASQEEVFLDT-RPLIRS-VLD--GYN--VCIFAYGQTGSGKTYTMSGPCISS-------------TEDWGV 602 (1073)
Q Consensus 542 ~FD~VF~~~atQeeVf~~~-~pLV~s-vLd--GyN--~~IfAYGQTGSGKTyTM~G~~~~~-------------~~~~GI 602 (1073)
+|+-|=|-+..=++|.+.+ -||.+- .+. |.. --|+-||+.|+|||-.----...+ ..--|=
T Consensus 149 tY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGE 228 (406)
T COG1222 149 TYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGE 228 (406)
T ss_pred ChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhcc
Confidence 3444433333334455443 354432 222 543 348999999999985321100000 011255
Q ss_pred hHHHHHHHHHHHHhccCCc
Q 001464 603 NYRALNDLFEISESRKNSI 621 (1073)
Q Consensus 603 ipRal~~LF~~~~~~~~~~ 621 (1073)
=+|.+++||.....+...+
T Consensus 229 GaRlVRelF~lArekaPsI 247 (406)
T COG1222 229 GARLVRELFELAREKAPSI 247 (406)
T ss_pred chHHHHHHHHHHhhcCCeE
Confidence 5899999999988766544
No 454
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=43.42 E-value=12 Score=44.55 Aligned_cols=25 Identities=36% Similarity=0.498 Sum_probs=19.5
Q ss_pred HHHHhhcCcceeEEeecccCCCCCeee
Q 001464 563 LIRSVLDGYNVCIFAYGQTGSGKTYTM 589 (1073)
Q Consensus 563 LV~svLdGyN~~IfAYGQTGSGKTyTM 589 (1073)
.|..++.|.|+ ++-++||||||.+.
T Consensus 38 aip~il~g~dv--i~~ApTGsGKTla~ 62 (423)
T PRK04837 38 ALPLTLAGRDV--AGQAQTGTGKTMAF 62 (423)
T ss_pred HHHHHhCCCcE--EEECCCCchHHHHH
Confidence 45667899885 55679999999864
No 455
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=43.41 E-value=4.8e+02 Score=28.64 Aligned_cols=23 Identities=35% Similarity=0.485 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001464 382 ESQKKLQELERLLTVSKKKVEEL 404 (1073)
Q Consensus 382 ele~~l~e~e~~l~~~~~~v~~l 404 (1073)
.|+.-++.++..+..++++|.++
T Consensus 140 ~Le~~~~~le~~l~~~k~~ie~v 162 (221)
T PF05700_consen 140 QLEAMLKRLEKELAKLKKEIEEV 162 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444
No 456
>PF09321 DUF1978: Domain of unknown function (DUF1978); InterPro: IPR015400 This domain is found in various hypothetical proteins produced by the bacterium Chlamydia pneumoniae. Their exact function has not, as yet, been identified. This entry includes the IncA proteins
Probab=43.32 E-value=4.6e+02 Score=29.56 Aligned_cols=35 Identities=20% Similarity=0.439 Sum_probs=22.1
Q ss_pred chhHHHHHHHHHhhhhccCCCCccccccccccccC
Q 001464 117 MAPVLQCLRSLRASFSFCDEEDTIQDHYRKRWNVS 151 (1073)
Q Consensus 117 ~~~Vv~cL~aL~~~~~~k~~~~~~~~~~~~~~~~~ 151 (1073)
+.-+..|+.-|+.-+-|-.-.|.+-+...+.|+..
T Consensus 13 f~e~~~~w~~~~k~~FWv~Ed~~Idit~~~~W~~~ 47 (241)
T PF09321_consen 13 FREILERWEDFRKTFFWVKEDGVIDITDPGSWDLS 47 (241)
T ss_pred HHHHHHHHHHHHHHheeeccCCccccCCccccccc
Confidence 44567788888887877765555433444566543
No 457
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=43.29 E-value=16 Score=46.56 Aligned_cols=36 Identities=31% Similarity=0.454 Sum_probs=26.9
Q ss_pred HHHHhchHHHHHHhh-cCcceeEEeecccCCCCCeee
Q 001464 554 EEVFLDTRPLIRSVL-DGYNVCIFAYGQTGSGKTYTM 589 (1073)
Q Consensus 554 eeVf~~~~pLV~svL-dGyN~~IfAYGQTGSGKTyTM 589 (1073)
--||.-+......++ .|.|-||+.-|.+|||||.|.
T Consensus 75 PHiy~iA~~Ay~~m~~~~~~QsIiisGESGAGKTet~ 111 (692)
T cd01385 75 PHIFAIADVAYYNMLRKKVNQCIVISGESGSGKTEST 111 (692)
T ss_pred CCHHHHHHHHHHHHHhcCCCceEEEecCCCCCchHHH
Confidence 346765543344433 689999999999999999986
No 458
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=43.23 E-value=5.1e+02 Score=28.92 Aligned_cols=14 Identities=14% Similarity=0.278 Sum_probs=6.9
Q ss_pred HHHHHHHHHHhHHH
Q 001464 433 IQDLRVAFESTKHE 446 (1073)
Q Consensus 433 l~el~~~~~~~k~e 446 (1073)
..-|+..+..++.+
T Consensus 90 y~~Lk~~in~~R~e 103 (230)
T PF10146_consen 90 YKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHH
Confidence 34445555555555
No 459
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=43.03 E-value=16 Score=46.58 Aligned_cols=36 Identities=33% Similarity=0.442 Sum_probs=28.1
Q ss_pred HHHHhchHHHHHHhh-cCcceeEEeecccCCCCCeee
Q 001464 554 EEVFLDTRPLIRSVL-DGYNVCIFAYGQTGSGKTYTM 589 (1073)
Q Consensus 554 eeVf~~~~pLV~svL-dGyN~~IfAYGQTGSGKTyTM 589 (1073)
--||.-+......++ .|.|-||+.-|.+|||||.|.
T Consensus 67 PHifavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 103 (679)
T cd00124 67 PHVFAIADRAYRNMLRDRRNQSIIISGESGAGKTENT 103 (679)
T ss_pred CCHHHHHHHHHHHHHhcCCCceEEEecCCCCCchHHH
Confidence 447766655555554 599999999999999999986
No 460
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=43.01 E-value=11 Score=42.51 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=17.5
Q ss_pred cCc-ceeEEeecccCCCCCeeeec
Q 001464 569 DGY-NVCIFAYGQTGSGKTYTMSG 591 (1073)
Q Consensus 569 dGy-N~~IfAYGQTGSGKTyTM~G 591 (1073)
.|- ...++-||++|+|||+.+..
T Consensus 39 ~~~~~~~lll~G~~G~GKT~la~~ 62 (316)
T PHA02544 39 KGRIPNMLLHSPSPGTGKTTVAKA 62 (316)
T ss_pred cCCCCeEEEeeCcCCCCHHHHHHH
Confidence 453 45677799999999998753
No 461
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=42.99 E-value=6.7e+02 Score=30.13 Aligned_cols=48 Identities=23% Similarity=0.275 Sum_probs=28.4
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHH
Q 001464 316 LERIKTEKTNIAQKEKLEEQNALRLKKENDDRDIEISTLKQDLELAKRTHE 366 (1073)
Q Consensus 316 l~~l~~e~~k~eek~~~~e~~~~~l~ke~e~~~~e~~~Lk~ele~~k~~~e 366 (1073)
++.|..|...+.+-..++++.+.+|+ +++.+++.-+-|-|+..|-.|+
T Consensus 262 l~aileeL~eIk~~q~~Leesye~Lk---e~~krdy~fi~etLQEERyR~e 309 (455)
T KOG3850|consen 262 LDAILEELREIKETQALLEESYERLK---EQIKRDYKFIAETLQEERYRYE 309 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 66677777777777777777666554 3455555555555544443333
No 462
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=42.96 E-value=9.1 Score=40.66 Aligned_cols=21 Identities=33% Similarity=0.352 Sum_probs=15.4
Q ss_pred CcceeEEeecccCCCCCeeee
Q 001464 570 GYNVCIFAYGQTGSGKTYTMS 590 (1073)
Q Consensus 570 GyN~~IfAYGQTGSGKTyTM~ 590 (1073)
..-..||..||.|||||+.+.
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~ 33 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLAR 33 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHH
T ss_pred cCCEEEEEeCCCCCCHHHHHH
Confidence 344678999999999988764
No 463
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=42.93 E-value=16 Score=46.69 Aligned_cols=18 Identities=44% Similarity=0.674 Sum_probs=15.7
Q ss_pred ceeEEeecccCCCCCeee
Q 001464 572 NVCIFAYGQTGSGKTYTM 589 (1073)
Q Consensus 572 N~~IfAYGQTGSGKTyTM 589 (1073)
|-.|+.+|+||||||+-+
T Consensus 271 n~vvIIcGeTGsGKTTQv 288 (1172)
T KOG0926|consen 271 NPVVIICGETGSGKTTQV 288 (1172)
T ss_pred CCeEEEecCCCCCccccc
Confidence 566888999999999877
No 464
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=42.91 E-value=13 Score=44.78 Aligned_cols=26 Identities=42% Similarity=0.631 Sum_probs=20.9
Q ss_pred HHHHHhhcCcceeEEeecccCCCCCeee
Q 001464 562 PLIRSVLDGYNVCIFAYGQTGSGKTYTM 589 (1073)
Q Consensus 562 pLV~svLdGyN~~IfAYGQTGSGKTyTM 589 (1073)
..|..+++|.| |++-.+||||||.+.
T Consensus 30 ~ai~~il~g~d--vlv~apTGsGKTla~ 55 (456)
T PRK10590 30 QAIPAVLEGRD--LMASAQTGTGKTAGF 55 (456)
T ss_pred HHHHHHhCCCC--EEEECCCCCcHHHHH
Confidence 34667788988 677889999999874
No 465
>PRK06547 hypothetical protein; Provisional
Probab=42.84 E-value=16 Score=38.38 Aligned_cols=27 Identities=26% Similarity=0.407 Sum_probs=18.4
Q ss_pred HHHHhhcCcceeEEeecccCCCCCeee
Q 001464 563 LIRSVLDGYNVCIFAYGQTGSGKTYTM 589 (1073)
Q Consensus 563 LV~svLdGyN~~IfAYGQTGSGKTyTM 589 (1073)
.+..+..+.---|..+|.+|||||+.-
T Consensus 6 ~~~~~~~~~~~~i~i~G~~GsGKTt~a 32 (172)
T PRK06547 6 IAARLCGGGMITVLIDGRSGSGKTTLA 32 (172)
T ss_pred HHHHhhcCCCEEEEEECCCCCCHHHHH
Confidence 344444444555667799999999864
No 466
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=42.72 E-value=18 Score=46.08 Aligned_cols=36 Identities=25% Similarity=0.443 Sum_probs=27.1
Q ss_pred HHHHhchHHHHHHhh-cCcceeEEeecccCCCCCeee
Q 001464 554 EEVFLDTRPLIRSVL-DGYNVCIFAYGQTGSGKTYTM 589 (1073)
Q Consensus 554 eeVf~~~~pLV~svL-dGyN~~IfAYGQTGSGKTyTM 589 (1073)
--||.-+......++ .|.|-||+.-|.+|||||.|.
T Consensus 67 PHifavA~~Ay~~m~~~~~~QsIiisGESGaGKTes~ 103 (671)
T cd01381 67 PHIFAISDNAYTNMQREKKNQCIIISGESGAGKTEST 103 (671)
T ss_pred CCHHHHHHHHHHHHHHcCCCceEEEEcCCCCCeehHH
Confidence 346765544444433 589999999999999999986
No 467
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=42.61 E-value=4.6e+02 Score=28.21 Aligned_cols=16 Identities=13% Similarity=0.389 Sum_probs=9.3
Q ss_pred CCcchHHHHHHHHHhH
Q 001464 227 ASTKSLFNIVNRILDE 242 (1073)
Q Consensus 227 ~~~~~l~~~~~~~l~~ 242 (1073)
...++.-.+|..++||
T Consensus 27 I~~~~VKdvlq~LvDD 42 (188)
T PF03962_consen 27 IVSMSVKDVLQSLVDD 42 (188)
T ss_pred CchhhHHHHHHHHhcc
Confidence 4455555666666655
No 468
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=42.56 E-value=8.6 Score=45.45 Aligned_cols=19 Identities=37% Similarity=0.366 Sum_probs=16.0
Q ss_pred eeEEeecccCCCCCeeeec
Q 001464 573 VCIFAYGQTGSGKTYTMSG 591 (1073)
Q Consensus 573 ~~IfAYGQTGSGKTyTM~G 591 (1073)
..|.-+|+||+|||+|+..
T Consensus 138 ~ii~lvGptGvGKTTtiak 156 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAK 156 (374)
T ss_pred cEEEEECCCCCCHHHHHHH
Confidence 4667899999999999854
No 469
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=42.54 E-value=17 Score=46.18 Aligned_cols=35 Identities=31% Similarity=0.521 Sum_probs=26.5
Q ss_pred HHHhchHHHHHHhh-cCcceeEEeecccCCCCCeee
Q 001464 555 EVFLDTRPLIRSVL-DGYNVCIFAYGQTGSGKTYTM 589 (1073)
Q Consensus 555 eVf~~~~pLV~svL-dGyN~~IfAYGQTGSGKTyTM 589 (1073)
-||.-+......++ .|.|-||+.-|.+|||||.|.
T Consensus 70 HifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 105 (674)
T cd01384 70 HVFAIADAAYRAMINEGKSQSILVSGESGAGKTETT 105 (674)
T ss_pred CHHHHHHHHHHHHHHcCCCceEEEECCCCCCchhHH
Confidence 46765543344433 689999999999999999986
No 470
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=42.54 E-value=2e+02 Score=29.97 Aligned_cols=39 Identities=18% Similarity=0.241 Sum_probs=17.8
Q ss_pred hhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhcc
Q 001464 306 TEENQVVANQLERIKTEKTNIAQKEKLEEQNALRLKKEN 344 (1073)
Q Consensus 306 ~ee~~~~~~~l~~l~~e~~k~eek~~~~e~~~~~l~ke~ 344 (1073)
.+++..+..++.+|+.+...++...+.++.++..|.+..
T Consensus 71 ~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~ 109 (169)
T PF07106_consen 71 PEELAELDAEIKELREELAELKKEVKSLEAELASLSSEP 109 (169)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 445555555555555444444444444444444443333
No 471
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=42.34 E-value=13 Score=49.84 Aligned_cols=41 Identities=27% Similarity=0.379 Sum_probs=0.0
Q ss_pred HhchHHHHHHhhcCcceeEEeecccCCCCCeeeecCCCCCCCccchhHHHHH
Q 001464 557 FLDTRPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPCISSTEDWGVNYRALN 608 (1073)
Q Consensus 557 f~~~~pLV~svLdGyN~~IfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~ 608 (1073)
+..+..+++.+-+|...+++. .+||||||+||.+ ++.+.+.
T Consensus 419 ~~AI~ai~~a~~~g~r~~Ll~-maTGSGKT~tai~----------li~~L~~ 459 (1123)
T PRK11448 419 EDAIQAVEKAIVEGQREILLA-MATGTGKTRTAIA----------LMYRLLK 459 (1123)
T ss_pred HHHHHHHHHHHHhccCCeEEE-eCCCCCHHHHHHH----------HHHHHHh
No 472
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=42.20 E-value=5.3e+02 Score=28.71 Aligned_cols=25 Identities=8% Similarity=0.065 Sum_probs=10.8
Q ss_pred HhhhHHHHHHHHHHHHHHhhhcccc
Q 001464 322 EKTNIAQKEKLEEQNALRLKKENDD 346 (1073)
Q Consensus 322 e~~k~eek~~~~e~~~~~l~ke~e~ 346 (1073)
...+|.+++..+.+++..+.++.+.
T Consensus 43 ~id~~~~e~~~L~~e~~~l~~e~e~ 67 (251)
T PF11932_consen 43 RIDQWDDEKQELLAEYRQLEREIEN 67 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555444444444444444333
No 473
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=42.15 E-value=7.9e+02 Score=30.74 Aligned_cols=177 Identities=15% Similarity=0.146 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Q 001464 307 EENQVVANQLERIKTEKTNIAQKEKLEEQNALRLKKEN--DDRDIEISTLKQDLELAKRTHELHCLQLEEQIYE------ 378 (1073)
Q Consensus 307 ee~~~~~~~l~~l~~e~~k~eek~~~~e~~~~~l~ke~--e~~~~e~~~Lk~ele~~k~~~e~~~~~le~~~~~------ 378 (1073)
.+...+..++++++.+...++++....+..+..|.+-. ...+.++......|....+..+.-..-++.-..+
T Consensus 168 ~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~~~l~~~E~e~L~~e~~~L~n~e~i~~~~~~~~~~L~~~~~~~~~ 247 (563)
T TIGR00634 168 QAWLKARQQLKDRQQKEQELAQRLDFLQFQLEELEEADLQPGEDEALEAEQQRLSNLEKLRELSQNALAALRGDVDVQEG 247 (563)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCCcCCCcHHHHHHHHHHHhCHHHHHHHHHHHHHHHhCCcccccc
Q ss_pred -------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHhHHHhhHHH---HHHH
Q 001464 379 -------------------TKIESQKKLQELERLLTVSKKKVEELESLSESKSQRWKRIEHSYQSFMGCQLGV---IQDL 436 (1073)
Q Consensus 379 -------------------~k~ele~~l~e~e~~l~~~~~~v~~le~~~~~~~~~~~~~~~~~~~~l~~Q~~~---l~el 436 (1073)
.-.++.+.+.+....+++....+...-+..+.....+...+.++..+-+...+. +.++
T Consensus 248 ~~~~~l~~~~~~l~~~~d~~~~~~~~~l~~~~~~l~d~~~~l~~~~~~l~~dp~~L~ele~RL~~l~~LkrKyg~s~e~l 327 (563)
T TIGR00634 248 SLLEGLGEAQLALASVIDGSLRELAEQVGNALTEVEEATRELQNYLDELEFDPERLNEIEERLAQIKRLKRKYGASVEEV 327 (563)
T ss_pred CHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHH
Q ss_pred HHHHHHhHHHHHHHHHhhHHHHHhhhhhHHHHHHHHHHHHHHHHHhhh
Q 001464 437 RVAFESTKHEVLETKKNYSKEFDCLGLNLKRLIDAAEKYHVILAENRR 484 (1073)
Q Consensus 437 ~~~~~~~k~ei~~~~~~~~~e~~~l~~~~~~l~~~~~~y~~~l~erRk 484 (1073)
....+.++.++.... .+.+++..|..++..+.+....+...+...|+
T Consensus 328 ~~~~~~l~~eL~~l~-~~~~~le~L~~el~~l~~~l~~~a~~Ls~~R~ 374 (563)
T TIGR00634 328 LEYAEKIKEELDQLD-DSDESLEALEEEVDKLEEELDKAAVALSLIRR 374 (563)
T ss_pred HHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 474
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=41.84 E-value=9 Score=42.53 Aligned_cols=19 Identities=26% Similarity=0.354 Sum_probs=15.4
Q ss_pred eeEEeecccCCCCCeeeec
Q 001464 573 VCIFAYGQTGSGKTYTMSG 591 (1073)
Q Consensus 573 ~~IfAYGQTGSGKTyTM~G 591 (1073)
..|+-||++|+|||++...
T Consensus 43 ~~vll~GppGtGKTtlA~~ 61 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARI 61 (261)
T ss_pred ceEEEEcCCCCCHHHHHHH
Confidence 4477899999999998643
No 475
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=41.80 E-value=5.1e+02 Score=28.44 Aligned_cols=40 Identities=10% Similarity=0.320 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHH
Q 001464 384 QKKLQELERLLTVSKKKVEELESLSESKSQRWKRIEHSYQ 423 (1073)
Q Consensus 384 e~~l~e~e~~l~~~~~~v~~le~~~~~~~~~~~~~~~~~~ 423 (1073)
..+...-+..-..++.+|..+|...++-..+|+.....|.
T Consensus 70 n~~ye~s~~~A~~V~~RI~~vE~Va~ALF~EWe~EL~~Y~ 109 (201)
T PF11172_consen 70 NDEYESSEDAAEEVSDRIDAVEDVADALFDEWEQELDQYS 109 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3334444555566777888888888888888887766665
No 476
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=41.77 E-value=18 Score=46.12 Aligned_cols=36 Identities=33% Similarity=0.433 Sum_probs=27.4
Q ss_pred HHHHhchHHHHHHhh-cCcceeEEeecccCCCCCeee
Q 001464 554 EEVFLDTRPLIRSVL-DGYNVCIFAYGQTGSGKTYTM 589 (1073)
Q Consensus 554 eeVf~~~~pLV~svL-dGyN~~IfAYGQTGSGKTyTM 589 (1073)
--||.-+......++ .|.|-||+.-|.+|||||.|.
T Consensus 73 PHifavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 109 (677)
T smart00242 73 PHVFAIADNAYRNMLNDKENQSIIISGESGAGKTENT 109 (677)
T ss_pred CCHHHHHHHHHHHHHhcCCCceEEEecCCCCcchHHH
Confidence 447766544444433 689999999999999999986
No 477
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=41.65 E-value=7.3e+02 Score=30.22 Aligned_cols=34 Identities=15% Similarity=0.259 Sum_probs=22.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhccC
Q 001464 461 LGLNLKRLIDAAEKYHVILAENRRLYNEVQDLKG 494 (1073)
Q Consensus 461 l~~~~~~l~~~~~~y~~~l~erRkL~N~vqeLKG 494 (1073)
...++-.+..+.+..+..+.||-.=+-||+-+-|
T Consensus 395 VD~kIleak~al~evtt~lrErl~RWqQIE~lcG 428 (575)
T KOG4403|consen 395 VDHKILEAKSALSEVTTLLRERLHRWQQIESLCG 428 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3344444555666677777677666778877766
No 478
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=41.35 E-value=19 Score=45.83 Aligned_cols=35 Identities=26% Similarity=0.476 Sum_probs=27.0
Q ss_pred HHHhchHHHHHHhh-cCcceeEEeecccCCCCCeee
Q 001464 555 EVFLDTRPLIRSVL-DGYNVCIFAYGQTGSGKTYTM 589 (1073)
Q Consensus 555 eVf~~~~pLV~svL-dGyN~~IfAYGQTGSGKTyTM 589 (1073)
-||.-+......++ .|.|-||+.-|.+|||||.|.
T Consensus 68 HifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 103 (674)
T cd01378 68 HIYALADNAYRSMKSENENQCVIISGESGAGKTEAA 103 (674)
T ss_pred CHHHHHHHHHHHHHHcCCCceEEEEcCCCCCcchHH
Confidence 47765544444444 689999999999999999986
No 479
>PRK11281 hypothetical protein; Provisional
Probab=41.08 E-value=1.1e+03 Score=32.25 Aligned_cols=10 Identities=30% Similarity=0.700 Sum_probs=4.6
Q ss_pred cccccCCCCC
Q 001464 963 DFVLLGFGDE 972 (1073)
Q Consensus 963 ~~~~~~~~~~ 972 (1073)
.+-+.+||+.
T Consensus 1032 ~V~~~~fgds 1041 (1113)
T PRK11281 1032 QVFFLNFGAS 1041 (1113)
T ss_pred EEEEEeccCc
Confidence 3444455543
No 480
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.97 E-value=5.1e+02 Score=28.39 Aligned_cols=48 Identities=23% Similarity=0.387 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhhH----HHHHhhhhhHHHHHHHHHHHHHHH
Q 001464 432 VIQDLRVAFESTKHEVLETKKNYS----KEFDCLGLNLKRLIDAAEKYHVIL 479 (1073)
Q Consensus 432 ~l~el~~~~~~~k~ei~~~~~~~~----~e~~~l~~~~~~l~~~~~~y~~~l 479 (1073)
.++....++.++|....+++..|. +.++.|.-.+..+.+.+...+.+|
T Consensus 98 ~LKdtq~Tv~AmK~~~k~mK~~ykkvnId~IedlQDem~Dlmd~a~EiQE~L 149 (218)
T KOG1655|consen 98 SLKDTQATVAAMKDTNKEMKKQYKKVNIDKIEDLQDEMEDLMDQADEIQEVL 149 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666667777777777777663 355566666666666666655555
No 481
>PRK10869 recombination and repair protein; Provisional
Probab=40.83 E-value=8.3e+02 Score=30.63 Aligned_cols=22 Identities=9% Similarity=-0.007 Sum_probs=15.2
Q ss_pred CCCccchhHHHHHHHHHHHHhc
Q 001464 596 STEDWGVNYRALNDLFEISESR 617 (1073)
Q Consensus 596 ~~~~~GIipRal~~LF~~~~~~ 617 (1073)
+..+.|+=+.....+.+.+...
T Consensus 459 DEpd~gld~~~~~~v~~~l~~l 480 (553)
T PRK10869 459 DEVDVGISGPTAAVVGKLLRQL 480 (553)
T ss_pred ECCCCCCCHHHHHHHHHHHHHH
Confidence 3456688888888777766654
No 482
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=40.64 E-value=7.2e+02 Score=29.85 Aligned_cols=46 Identities=26% Similarity=0.309 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHhhhhhHHHhhHHHH-------HHHHHHHhhhhccchhhHH
Q 001464 256 ACLLRKVVPLIERRTATQYQNFKNQNNLFRAREEKY-------KSRIRVLETLTVGTTEENQ 310 (1073)
Q Consensus 256 ~~~l~kvv~e~e~ris~q~~~~~~q~~~~~~~~~~~-------~~~~~~le~l~~~~~ee~~ 310 (1073)
+.---|+|+++-|.- |..|-|-++||- -.-|.++|++...+.||.+
T Consensus 347 EetHQkkiEdLQRqH---------qRELekLreEKdrLLAEETAATiSAIEAMKnAhrEEme 399 (593)
T KOG4807|consen 347 EETHQKKIEDLQRQH---------QRELEKLREEKDRLLAEETAATISAIEAMKNAHREEME 399 (593)
T ss_pred HHHHHHHHHHHHHHH---------HHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 455567777774432 233445555542 2336667777777766654
No 483
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=40.56 E-value=20 Score=45.66 Aligned_cols=36 Identities=28% Similarity=0.441 Sum_probs=27.7
Q ss_pred HHHHhchHHHHHHhh-cCcceeEEeecccCCCCCeee
Q 001464 554 EEVFLDTRPLIRSVL-DGYNVCIFAYGQTGSGKTYTM 589 (1073)
Q Consensus 554 eeVf~~~~pLV~svL-dGyN~~IfAYGQTGSGKTyTM 589 (1073)
--||.-+......++ .|.|-||+.-|.+|||||.|.
T Consensus 68 PHifavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 104 (677)
T cd01387 68 PHLFAIANLAFAKMLDAKQNQCVIISGESGSGKTEAT 104 (677)
T ss_pred CCHHHHHHHHHHHHHhcCCCceEEEEcCCCCCeehHH
Confidence 347766544444444 699999999999999999986
No 484
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=40.47 E-value=4.1e+02 Score=28.48 Aligned_cols=12 Identities=17% Similarity=0.365 Sum_probs=0.0
Q ss_pred HHHHhhhhhHHH
Q 001464 266 IERRTATQYQNF 277 (1073)
Q Consensus 266 ~e~ris~q~~~~ 277 (1073)
.+..+....++|
T Consensus 72 le~~~~~l~~EL 83 (194)
T PF08614_consen 72 LEQKLAKLQEEL 83 (194)
T ss_dssp ------------
T ss_pred cccccccccccc
Confidence 444444444333
No 485
>KOG0992 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.41 E-value=8.2e+02 Score=30.43 Aligned_cols=14 Identities=21% Similarity=0.401 Sum_probs=7.4
Q ss_pred hhhhhhhhhccCCE
Q 001464 483 RRLYNEVQDLKGNI 496 (1073)
Q Consensus 483 RkL~N~vqeLKGnI 496 (1073)
+.|+-++++.+.+|
T Consensus 406 keL~~El~~yrr~i 419 (613)
T KOG0992|consen 406 KELEIELEEYRRAI 419 (613)
T ss_pred HHHHHHHHHHHHhc
Confidence 44555565555444
No 486
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=40.34 E-value=12 Score=43.47 Aligned_cols=17 Identities=47% Similarity=0.604 Sum_probs=14.0
Q ss_pred ceeEEeecccCCCCCee
Q 001464 572 NVCIFAYGQTGSGKTYT 588 (1073)
Q Consensus 572 N~~IfAYGQTGSGKTyT 588 (1073)
.+-|+..|+||||||+.
T Consensus 97 KSNILLiGPTGsGKTlL 113 (408)
T COG1219 97 KSNILLIGPTGSGKTLL 113 (408)
T ss_pred eccEEEECCCCCcHHHH
Confidence 34678899999999963
No 487
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=40.19 E-value=8.3e+02 Score=30.44 Aligned_cols=18 Identities=11% Similarity=0.198 Sum_probs=10.8
Q ss_pred ccchhHHHHHHHHHHHHh
Q 001464 599 DWGVNYRALNDLFEISES 616 (1073)
Q Consensus 599 ~~GIipRal~~LF~~~~~ 616 (1073)
+.=.|+-+++.+|+....
T Consensus 355 eq~~I~e~ve~i~~ts~q 372 (596)
T KOG4360|consen 355 EQKRIFETVEQINETSQQ 372 (596)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345566677777765543
No 488
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=40.07 E-value=1e+03 Score=31.55 Aligned_cols=9 Identities=33% Similarity=0.390 Sum_probs=4.7
Q ss_pred CCCCCCccc
Q 001464 968 GFGDEVSEE 976 (1073)
Q Consensus 968 ~~~~~~~~~ 976 (1073)
|||..|.+.
T Consensus 850 pf~~LD~e~ 858 (908)
T COG0419 850 PFGTLDEER 858 (908)
T ss_pred CCCCCCHHH
Confidence 555555543
No 489
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=39.82 E-value=1.2e+02 Score=32.25 Aligned_cols=7 Identities=29% Similarity=0.814 Sum_probs=2.9
Q ss_pred hhhhhHH
Q 001464 278 KNQNNLF 284 (1073)
Q Consensus 278 ~~q~~~~ 284 (1073)
++|.|++
T Consensus 99 raQRN~Y 105 (192)
T PF05529_consen 99 RAQRNMY 105 (192)
T ss_pred HHHHhHH
Confidence 3444444
No 490
>PRK10536 hypothetical protein; Provisional
Probab=39.57 E-value=13 Score=41.91 Aligned_cols=42 Identities=21% Similarity=0.373 Sum_probs=27.6
Q ss_pred eeeceeeCCCCChHHHHhchHHHHHHhhcCcceeEEeecccCCCCCeeeec
Q 001464 541 FKFNKVFGPEASQEEVFLDTRPLIRSVLDGYNVCIFAYGQTGSGKTYTMSG 591 (1073)
Q Consensus 541 F~FD~VF~~~atQeeVf~~~~pLV~svLdGyN~~IfAYGQTGSGKTyTM~G 591 (1073)
|.|-.|-+-+..|..... .+.+ +.-|+..|++||||||....
T Consensus 52 ~~~~~i~p~n~~Q~~~l~-------al~~--~~lV~i~G~aGTGKT~La~a 93 (262)
T PRK10536 52 RDTSPILARNEAQAHYLK-------AIES--KQLIFATGEAGCGKTWISAA 93 (262)
T ss_pred cCCccccCCCHHHHHHHH-------HHhc--CCeEEEECCCCCCHHHHHHH
Confidence 555556665555554333 2333 34889999999999998643
No 491
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=39.54 E-value=19 Score=45.88 Aligned_cols=36 Identities=33% Similarity=0.452 Sum_probs=27.6
Q ss_pred HHHHhchHHHHHHhh-cCcceeEEeecccCCCCCeee
Q 001464 554 EEVFLDTRPLIRSVL-DGYNVCIFAYGQTGSGKTYTM 589 (1073)
Q Consensus 554 eeVf~~~~pLV~svL-dGyN~~IfAYGQTGSGKTyTM 589 (1073)
--||.-+......++ .|.|-||+.-|.+|||||.|.
T Consensus 72 PHiyaiA~~Ay~~m~~~~~~QsIiiSGESGAGKTes~ 108 (693)
T cd01377 72 PHIFAIADNAYRSMLQDRENQSILITGESGAGKTENT 108 (693)
T ss_pred CCHHHHHHHHHHHHHhcCCCceEEEEcCCCCCchHHH
Confidence 447766544444444 599999999999999999885
No 492
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=39.43 E-value=18 Score=43.43 Aligned_cols=38 Identities=37% Similarity=0.365 Sum_probs=0.0
Q ss_pred ChHHHHhchHHHHHHhhcCcc------eeEEeecccCCCCCeee
Q 001464 552 SQEEVFLDTRPLIRSVLDGYN------VCIFAYGQTGSGKTYTM 589 (1073)
Q Consensus 552 tQeeVf~~~~pLV~svLdGyN------~~IfAYGQTGSGKTyTM 589 (1073)
+..++...+...+...+.... ..|+-.|++|+|||+|+
T Consensus 215 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~vI~LVGptGvGKTTTi 258 (436)
T PRK11889 215 TEEEVIEYILEDMRSHFNTENVFEKEVQTIALIGPTGVGKTTTL 258 (436)
T ss_pred CHHHHHHHHHHHHHHHhccccccccCCcEEEEECCCCCcHHHHH
No 493
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=39.32 E-value=6e+02 Score=31.94 Aligned_cols=140 Identities=17% Similarity=0.162 Sum_probs=0.0
Q ss_pred HHHHHHhhhhhHHHhhhhhHHHhhHHHHHHHHHHHhhhhccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhc
Q 001464 264 PLIERRTATQYQNFKNQNNLFRAREEKYKSRIRVLETLTVGTTEENQVVANQLERIKTEKTNIAQKEKLEEQNALRLKKE 343 (1073)
Q Consensus 264 ~e~e~ris~q~~~~~~q~~~~~~~~~~~~~~~~~le~l~~~~~ee~~~~~~~l~~l~~e~~k~eek~~~~e~~~~~l~ke 343 (1073)
.|.|+=|----..|.+.|-|--++.+..-. .-+-+-|..+|.-++...++-+.|++|+.+.+|+
T Consensus 301 rEVeNLilENsqLLetKNALNiVKNDLIak--------VDeL~~E~~vLrgElea~kqak~Klee~i~elEE-------- 364 (832)
T KOG2077|consen 301 REVENLILENSQLLETKNALNIVKNDLIAK--------VDELTCEKDVLRGELEAVKQAKLKLEEKIRELEE-------- 364 (832)
T ss_pred HHHHHHHHhhHHHHhhhhHHHHHHHHHHHH--------HHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHH--------
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHH
Q 001464 344 NDDRDIEISTLKQDLELAKRTHELHCLQLEEQIYETKIESQKKLQELERLLTVSKKKVEELESLSESKSQRWKRIEHSYQ 423 (1073)
Q Consensus 344 ~e~~~~e~~~Lk~ele~~k~~~e~~~~~le~~~~~~k~ele~~l~e~e~~l~~~~~~v~~le~~~~~~~~~~~~~~~~~~ 423 (1073)
|+..+|++++.+++.+...... ..=....|.--.-.....--+-...+.++-+|++.- +|.++..--+
T Consensus 365 ------Elk~~k~ea~~ar~~~~~~e~d-diPmAqRkRFTRvEMaRVLMeRNqYKErLMELqEav-----rWTEMiRAsr 432 (832)
T KOG2077|consen 365 ------ELKKAKAEAEDARQKAKDDEDD-DIPMAQRKRFTRVEMARVLMERNQYKERLMELQEAV-----RWTEMIRASR 432 (832)
T ss_pred ------HHHHHHHHHHHHHHhhcccccc-cccHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHH-----hHHHHHHHhh
Q ss_pred hHHHhhHH
Q 001464 424 SFMGCQLG 431 (1073)
Q Consensus 424 ~~l~~Q~~ 431 (1073)
..-..|.+
T Consensus 433 e~p~vqeK 440 (832)
T KOG2077|consen 433 ENPAVQEK 440 (832)
T ss_pred cCchhhhh
No 494
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=39.24 E-value=2.9e+02 Score=29.60 Aligned_cols=124 Identities=15% Similarity=0.157 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhhHHHhhhhhHHHhhHHHHHHHHHHHhhhhccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhh
Q 001464 263 VPLIERRTATQYQNFKNQNNLFRAREEKYKSRIRVLETLTVGTTEENQVVANQLERIKTEKTNIAQKEKLEEQNALRLKK 342 (1073)
Q Consensus 263 v~e~e~ris~q~~~~~~q~~~~~~~~~~~~~~~~~le~l~~~~~ee~~~~~~~l~~l~~e~~k~eek~~~~e~~~~~l~k 342 (1073)
+.+.+..+....++|.. +.+.+.+. ..++..+..-......++......+..+..+...++++.+..+.++....+
T Consensus 69 ~~~le~~~~~l~~ELae---l~r~~~el-~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k 144 (194)
T PF08614_consen 69 ISSLEQKLAKLQEELAE---LYRSKGEL-AQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNK 144 (194)
T ss_dssp -------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccc---cccccccc-cccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001464 343 ENDDRDIEISTLKQDLELAKRTHELHCLQLEEQIYETKIESQKKLQEL 390 (1073)
Q Consensus 343 e~e~~~~e~~~Lk~ele~~k~~~e~~~~~le~~~~~~k~ele~~l~e~ 390 (1073)
-.+..+-|+.+|.-++..+......-..+...-..---....+.-..+
T Consensus 145 ~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~k~~eAe~m 192 (194)
T PF08614_consen 145 ANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQRKAQEAERM 192 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 495
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=38.91 E-value=16 Score=41.87 Aligned_cols=41 Identities=24% Similarity=0.302 Sum_probs=0.0
Q ss_pred eCCCCChHHHHhchHHHHHHhhcCcce--eEEeecccCCCCCe
Q 001464 547 FGPEASQEEVFLDTRPLIRSVLDGYNV--CIFAYGQTGSGKTY 587 (1073)
Q Consensus 547 F~~~atQeeVf~~~~pLV~svLdGyN~--~IfAYGQTGSGKTy 587 (1073)
|+.-..|+++-.....++......-.. .++-||++|+|||+
T Consensus 24 ~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~ 66 (328)
T PRK00080 24 LDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTT 66 (328)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHH
No 496
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=38.72 E-value=1.8e+02 Score=31.73 Aligned_cols=98 Identities=27% Similarity=0.285 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001464 315 QLERIKTEKTNIAQKEKLEEQNALRLKKENDDRDIEISTLKQDLELAKRTHELHCLQLEEQIYETKIESQKKLQELERLL 394 (1073)
Q Consensus 315 ~l~~l~~e~~k~eek~~~~e~~~~~l~ke~e~~~~e~~~Lk~ele~~k~~~e~~~~~le~~~~~~k~ele~~l~e~e~~l 394 (1073)
+...|+.|...++++..-.++....- ..........+|.|++.+=.=-+.+..+++. -...-...++.+++.+
T Consensus 97 EevrLkrELa~Le~~l~~~~~~~~~~---~~~~~~~~~lvk~e~EqLL~YK~~ql~~~~~----~~~~~~~~l~~v~~Dl 169 (195)
T PF12761_consen 97 EEVRLKRELAELEEKLSKVEQAAESR---RSDTDSKPALVKREFEQLLDYKERQLRELEE----GRSKSGKNLKSVREDL 169 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc---ccCCcchHHHHHHHHHHHHHHHHHHHHhhhc----cCCCCCCCHHHHHHHH
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHH
Q 001464 395 TVSKKKVEELESLSESKSQRWKRIE 419 (1073)
Q Consensus 395 ~~~~~~v~~le~~~~~~~~~~~~~~ 419 (1073)
..+..+|..||++...+.+.++...
T Consensus 170 ~~ie~QV~~Le~~L~~k~~eL~~L~ 194 (195)
T PF12761_consen 170 DTIEEQVDGLESHLSSKKQELQQLR 194 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
No 497
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=38.71 E-value=9.5e+02 Score=30.68 Aligned_cols=211 Identities=18% Similarity=0.201 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHH
Q 001464 291 YKSRIRVLETLTVGTTEENQVVANQLERIKTEKTNIAQKEKLEEQNALRLKKENDDRDIEISTLKQDLELAKRTHELHCL 370 (1073)
Q Consensus 291 ~~~~~~~le~l~~~~~ee~~~~~~~l~~l~~e~~k~eek~~~~e~~~~~l~ke~e~~~~e~~~Lk~ele~~k~~~e~~~~ 370 (1073)
||.|..-|+.=.-+-.-.+.+|..++.. ..+||.+-.-..+..-.+|..--|-.+.|+-.- ++||.-|-..-....
T Consensus 109 yQerLaRLe~dkesL~LQvsvLteqVea---QgEKIrDLE~cie~kr~kLnatEEmLQqellsr-tsLETqKlDLmaevS 184 (861)
T KOG1899|consen 109 YQERLARLEMDKESLQLQVSVLTEQVEA---QGEKIRDLETCIEEKRNKLNATEEMLQQELLSR-TSLETQKLDLMAEVS 184 (861)
T ss_pred HHHHHHHHhcchhhheehHHHHHHHHHH---hhhhHHHHHHHHHHHHhhhchHHHHHHHHHHhh-hhHHHHHhHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHhHHHhhHHHHHHHHHHHHHhHHHHHHH
Q 001464 371 QLEEQIYETKIESQKKLQELERLLTVSKKKVEELESLSESKSQRWKRIEHSYQSFMGCQLGVIQDLRVAFESTKHEVLET 450 (1073)
Q Consensus 371 ~le~~~~~~k~ele~~l~e~e~~l~~~~~~v~~le~~~~~~~~~~~~~~~~~~~~l~~Q~~~l~el~~~~~~~k~ei~~~ 450 (1073)
+|.-+. .-+|++-.|.|..+....+.+.++. ..+-.........|...+..-...+..|+.....-..|+...
T Consensus 185 eLKLkl----talEkeq~e~E~K~R~se~l~qevn---~~kv~e~~~erlqye~klkstk~e~a~L~Eq~~eK~~e~~rl 257 (861)
T KOG1899|consen 185 ELKLKL----TALEKEQNETEKKLRLSENLMQEVN---QSKVGEVVQERLQYETKLKSTKGEMAPLREQRSEKNDEEMRL 257 (861)
T ss_pred HhHHHH----HHHHHHhhhHHHHHHhHHHHHHHHH---HHHHHHHHHHHHHHHhhcccccchhhhHHHHHhhhhhHHHHH
Q ss_pred HHhhHHHHHhhhh----hHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCEEEEeecCCCCCcccCC
Q 001464 451 KKNYSKEFDCLGL----NLKRLIDAAEKYHVILAENRRLYNEVQDLKGNIRVYCRIRPFLPGQSKK 512 (1073)
Q Consensus 451 ~~~~~~e~~~l~~----~~~~l~~~~~~y~~~l~erRkL~N~vqeLKGnIRV~~RVRP~l~~e~~~ 512 (1073)
++.....+.-=+. ....|..+.+..-..-++..+.+..+-.+-.|.++..-|+-++.++...
T Consensus 258 ~~~lv~~~~~d~e~~~~rd~~lk~a~eslm~ane~kdr~ie~lr~~ln~y~k~~~iv~i~qg~~~~ 323 (861)
T KOG1899|consen 258 LRTLVQRLMADGEHKSLRDNTLKNALESLMRANEQKDRFIESLRNYLNNYDKNAQIVRILQGEPSD 323 (861)
T ss_pred HHHHHHHHhhcccchhhHHHHHHHHHHHHHhhchhhhhHHHHHHHHhhhhhhhhhhhhhhcCCCcc
No 498
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=38.67 E-value=21 Score=45.60 Aligned_cols=33 Identities=27% Similarity=0.450 Sum_probs=0.0
Q ss_pred HHhchHHHHHHhh-cCcceeEEeecccCCCCCee
Q 001464 556 VFLDTRPLIRSVL-DGYNVCIFAYGQTGSGKTYT 588 (1073)
Q Consensus 556 Vf~~~~pLV~svL-dGyN~~IfAYGQTGSGKTyT 588 (1073)
||.-+......++ .|.|-||+.-|.+|||||.|
T Consensus 69 ifaiA~~Ay~~m~~~~~~QsIiiSGESGaGKTes 102 (691)
T cd01380 69 IFAIAEEAYKQMTRDEKNQSIIVSGESGAGKTVS 102 (691)
T ss_pred HHHHHHHHHHHHHhcCCCceEEEEcCCCCCchHH
No 499
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=38.62 E-value=20 Score=45.90 Aligned_cols=33 Identities=27% Similarity=0.334 Sum_probs=0.0
Q ss_pred HHhchHHHHHHhh-cCcceeEEeecccCCCCCee
Q 001464 556 VFLDTRPLIRSVL-DGYNVCIFAYGQTGSGKTYT 588 (1073)
Q Consensus 556 Vf~~~~pLV~svL-dGyN~~IfAYGQTGSGKTyT 588 (1073)
||.-+......++ .|.|-||+.-|.+|||||.|
T Consensus 74 ifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTes 107 (717)
T cd01382 74 VFAIADKAYRDMKVLKMSQSIIVSGESGAGKTEN 107 (717)
T ss_pred HHHHHHHHHHHHHhcCCCCeEEEecCCCCChhHH
No 500
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=38.55 E-value=25 Score=42.47 Aligned_cols=45 Identities=24% Similarity=0.160 Sum_probs=0.0
Q ss_pred ceeeCCCCChHHHHhchHHHHHHhhcCc---------ceeEEeecccCCCCCee
Q 001464 544 NKVFGPEASQEEVFLDTRPLIRSVLDGY---------NVCIFAYGQTGSGKTYT 588 (1073)
Q Consensus 544 D~VF~~~atQeeVf~~~~pLV~svLdGy---------N~~IfAYGQTGSGKTyT 588 (1073)
..+-..-...+.+...+..-+..++.|. -..|+-+|.+|+|||+|
T Consensus 58 ~~~~~~~~~~~~~~~~v~~~L~~~l~~~~~~~~~~~~p~vI~lvG~~GsGKTTt 111 (437)
T PRK00771 58 EEPPKGLTPREHVIKIVYEELVKLLGEETEPLVLPLKPQTIMLVGLQGSGKTTT 111 (437)
T ss_pred ccccccCCcHHHHHHHHHHHHHHHhCCCccccccCCCCeEEEEECCCCCcHHHH
Done!