Query 001466
Match_columns 1073
No_of_seqs 427 out of 1404
Neff 7.4
Searched_HMMs 29240
Date Tue Mar 26 15:49:40 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001466.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_769-773//hhsearch_pdb/001466hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f3t_A Protein argonaute-2; hy 1.0 1 1 1616.4 76.3 833 193-1073 19-861 (861)
2 4f1n_A Kpago; argonaute, RNAI, 1.0 1 1 1498.7 56.9 838 192-1073 10-1046(1046)
3 2yhb_A QDE-2, post-transcripti 1.0 1 1 872.0 22.2 413 613-1073 2-437 (437)
4 1yvu_A Hypothetical protein AQ 1.0 1 1 864.7 37.5 659 217-1021 6-696 (706)
5 1u04_A Argonaute, hypothetical 1.0 1 1 764.6 38.5 661 213-1021 3-759 (771)
6 2yha_A Post-transcriptional ge 1.0 1 1 716.6 24.1 365 613-1073 2-388 (388)
7 3ho1_A Argonaute; argonaute, p 1.0 1 1 697.4 49.4 641 212-1016 5-669 (685)
8 2w42_A PIWI, putative uncharac 1.0 1 1 473.6 13.4 365 587-1020 5-407 (427)
9 4g0x_A Protein argonaute 1; MI 1.0 1 1 226.6 15.0 146 615-760 2-147 (147)
10 1vyn_A Argonaute2; nucleic aci 1.0 1 1 222.4 10.1 138 406-546 2-143 (143)
No 1
>4f3t_A Protein argonaute-2; hydrolase/gene regulation, RNAI, slicer, hydrolase-RNA; 2.25A {Homo sapiens} PDB: 4ei1_A 4ei3_A* 1r4k_A 1si2_A 1si3_A
Probab=1.00 E-value=1 Score=1616.41 Aligned_cols=833 Identities=44% Similarity=0.762 Sum_probs=728.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEC
Q ss_conf 99987756878999999998336971147856499852665689728765302229999999999985004984215616
Q 001466 193 PPSSKSVRFPLRPGRGSTGTRCIVKANHFFAELPDKDLHQYDVTITPEVTSRGVNRAVMEQLVKLYRESHLGKRLPAYDG 272 (1073)
Q Consensus 193 p~~~~~~~~p~RP~~Gt~G~~v~l~tN~f~v~~~~~~iy~YdV~i~pe~~~k~~~r~i~~~l~~~~~~~~~~~~~~~yDG 272 (1073)
|.+.+...+|+||++||.|++|.|+||||++++++..+|||||+|+|+..+++++|++++++++.++...|++..+||||
T Consensus 19 ~~~~~~~~~p~RPg~Gt~G~~i~l~aN~F~v~~~~~~ly~Y~V~i~p~~~~~~~~r~i~~~l~~~~~~~~~~~~~~afDG 98 (861)
T 4f3t_A 19 PIQGYAFKPPPRPDFGTSGRTIKLQANFFEMDIPKIDIYHYELDIKPEKCPRRVNREIVEHMVQHFKTQIFGDRKPVFDG 98 (861)
T ss_dssp ------CCCCBCCCCCCCSEEEEEEESEEEEECCSCEEEEEEEEEESCSCCHHHHHHHHHHHHHHSCCCCCTTCCCEECS
T ss_pred CCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECC
T ss_conf 54454566798997898884789995569987788862650378478767677999999999987556650686078758
Q ss_pred CCEEEECCCCCCCCCEEEEEEECCCCCCCCCCCCCEEEEEEEEEEEECHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 63278417789996308999815999999988784899999993540746489875168999937899999999804998
Q 001466 273 RKSLYTAGPLPFLSKEFRITLLDDDDGQGGQRREREFKVVIKLAARADLHHLGLFLQGRQADAPQEALQVLDIVLRELPT 352 (1073)
Q Consensus 273 ~~~lys~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~v~i~~~~~~~l~~l~~~l~~~~~~~~~~~lq~Lniilr~~~~ 352 (1073)
+++|||+.+||+++..+++.+....+ .+++.|+|+|++++++++.+|.+||.+.....+.++||+||||||+.++
T Consensus 99 ~~~l~s~~~L~~~~~~~~~~v~~~~~-----~~~~~~~V~I~~~~~i~l~~L~~~l~g~~~~~~~~~iq~Lniilr~~~~ 173 (861)
T 4f3t_A 99 RKNLYTAMPLPIGRDKVELEVTLPGE-----GKDRIFKVSIKWVSCVSLQALHDALSGRLPSVPFETIQALDVVMRHLPS 173 (861)
T ss_dssp SSEEEESSCCSCSSCEEEEECCC------------CEEEEEEEEEEEEHHHHHHHHHTCSSSCCHHHHHHHHHHHHHHHH
T ss_pred CCEEEECCCCCCCCCCEEEEEECCCC-----CCCCEEEEEEEEEEECCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 63178887678778636999863788-----9872799999990243889999996499878828999999999976221
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCEEEEEECCEEEEECCCCHHHHHHHHHCCCCC---CCCCC
Q ss_conf 873455654459999996458997599830012100147805875405333474475199999998427999---99999
Q 001466 353 TRYCPVGRSFYSPDLGRRQPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVQQLLNRDVS---SRPLS 429 (1073)
Q Consensus 353 ~~~~~iGr~ff~~~~~~~~~lg~Gle~~~G~~~Svr~~~~~l~LniD~s~~~F~~~~~l~d~i~~~~~~~~~---~~~~~ 429 (1073)
.++..+||+||++..+...++++|+|+|+||++|||+++++|+||+|+++++|+++++|+|++.++++..+. .+.++
T Consensus 174 ~~~~~vGR~Ff~~~~~~~~~lg~Gle~w~G~~~Svr~~~~~l~LnvDvs~~~F~~~~~v~d~~~~~~~~~~~~~~~~~~~ 253 (861)
T 4f3t_A 174 MRYTPVGRSFFTASEGCSNPLGGGREVWFGFHQSVRPSLWKMMLNIDVSATAFYKAQPVIEFVCEVLDFKSIEEQQKPLT 253 (861)
T ss_dssp HHSEEETTEEECCC---CCEEETTEEEEEEEEEEEEECSSSEEEEEEEEEEEEECCEEHHHHHHHHHTCSSCC---CCCC
T ss_pred CCCCCCCCCCCCCCCCCEECCCCCEEEEECEEEEEEECCCCCEEEECCCCEEEEECCCHHHHHHHHHCCCCHHHHCCCCC
T ss_conf 24642687755898775011689879984506789851785278541431027607709999999863455022035657
Q ss_pred HHHHHHHHHHHCCCEEEEEECCCCCCEEEEECCCCCCCCCEEEEEC-CCC--CEEEHHHHHHHHCCCCCCCCCCCEEEEC
Q ss_conf 6789999998159599993259877339994357899875045415-999--2742999999881976678998379924
Q 001466 430 DADRVKIKKALRGVRVEVTHRGNMRRKYRISGLTSQTTGELTFPVD-ESG--TLKSVVEYFYETYGFVIQHTQWPCLQVG 506 (1073)
Q Consensus 430 ~~~~~~i~~~Lkgl~V~~~~~~~~~r~~~I~gi~~~~a~~~~F~~~-~~g--~~itV~~Yf~~~Y~i~L~~p~lP~v~~g 506 (1073)
+.++.+++++|+|++|.++|.+..+|+|+|.+|++.++.+.+|.++ ++| ++|||+|||+++|||+|+||+||||++|
T Consensus 254 ~~~~~~~~k~LkGl~V~~t~~~~~~r~yrI~~i~~~pa~~~~F~~~~~~g~~~~iSV~dYFk~kYni~L~~p~lPll~~g 333 (861)
T 4f3t_A 254 DSQRVKFTKEIKGLKVEITHCGQMKRKYRVCNVTRRPASHQTFPLQQESGQTVECTVAQYFKDRHKLVLRYPHLPCLQVG 333 (861)
T ss_dssp HHHHHHHHHHHTTCEEEESCC---CCEEEEEEEEEEETTTCEEEEECSSSCEEEEEHHHHHHHHHCCCCSCTTSEEEEES
T ss_pred HHHHHHHHHHHCCCEEEEEECCCCCCEEEEEECCCCCCCCCEEEEECCCCCCEEEEHHHHHHHHCCCCCCCCCCCEEEEC
T ss_conf 78999999985793899830377886599953788998776787652789841688899998753952479997638834
Q ss_pred CCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCEEEEEE
Q ss_conf 58877322454267406843335699999999999823992678999999998325999821232263872652287637
Q 001466 507 NQQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPHERERDIMQTVHHNAYHEDPYAREFGIKISEKLASVEAR 586 (1073)
Q Consensus 507 ~~~~~~ylP~Elc~i~~gQ~~~~kl~~~q~~~mik~a~~~P~~R~~~I~~~~~~~~~~~~~~l~~fGi~i~~~~~~v~gR 586 (1073)
++++++|||||||.|+|||+|.++|+++|+++||++++..|.+|.+.|.++++.+.++.+++|++|||+|+++|++|+||
T Consensus 334 ~~~~~~ylP~Elc~i~~gQ~~~~~Lt~~q~s~mik~~~~~P~~R~~~I~~~~~~l~~~~~~~l~~fGi~i~~~~~~v~gR 413 (861)
T 4f3t_A 334 QEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIRATARSAPDRQEEISKLMRSASFNTDPYVREFGIMVKDEMTDVTGR 413 (861)
T ss_dssp CTTTTEEEEGGGEEECTTCBCCSCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCGGGCHHHHHTTCEECSSCEEEEEE
T ss_pred CCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCEEECCEEEEEEE
T ss_conf 88887525656689407844556689899999999875497999999999998716897568997797883875689779
Q ss_pred ECCCCCEEECCCCCCCCCCCCCCCEECCCCEEEECCEECEEEEEEECC--CCCHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 818994330589984335996750001273353072205269999468--855689999999999998842954589992
Q 001466 587 ILPAPWLKYHDTGKEKDCLPQVGQWNMMNKKMVNGGTVNHWICINFSR--HVQDSIARGFCFELAQMCYISGMAFNPEPV 664 (1073)
Q Consensus 587 vL~~P~i~y~~~~~~~~~~p~~G~Wn~~~~kf~~~~~i~~W~~v~~~~--~~~~~~~~~f~~~l~~~~~~~Gi~i~~~p~ 664 (1073)
|||||+|.|+++.+ ..+.|.+|+||+++++|+++++|++|++++|.. ...++.++.|++.|.+.|+.+||.+..+|.
T Consensus 414 vL~~P~I~y~~~~~-~~~~~~~g~W~~~~~~f~~~~~l~~W~vv~~~~~~~~~~~~~~~f~~~L~~~~~~~G~~i~~~p~ 492 (861)
T 4f3t_A 414 VLQPPSILYGGRNK-AIATPVQGVWDMRNKQFHTGIEIKVWAIACFAPQRQCTEVHLKSFTEQLRKISRDAGMPIQGQPC 492 (861)
T ss_dssp ECCCCCEECCSSSC-CEECCBTTBCCCTTCCCTBCCCBCCEEEEECSCTTTSCHHHHHHHHHHHHHHHHHHTCCBCSCCS
T ss_pred EECCCEEEECCCCC-CCCCCCCCCEECCCCEECCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCE
T ss_conf 82586488568764-33378878513569887027544405999845754445899999999999998507865479973
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHH
Q ss_conf 06899990559999999999998650699985099999508998404455576211347101333102102343668999
Q 001466 665 IPPISARPEHVEKVLKTRYHDAMTKLGQGKELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYMAN 744 (1073)
Q Consensus 665 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~lvlvilp~~~~~~Y~~iK~~~d~~~GI~TQci~~~~~~k~~~q~~~N 744 (1073)
+.......+.++..++.+.+. . .++||||||||++ .++|+.||++||+++||+||||+.+++.|.++||+.|
T Consensus 493 ~~~~~~~~~~~~~~~~~l~~~----~---~~~qlvl~Ilp~~-~~~Y~~IK~~~~~~~gI~TQcv~~~~~~k~~~q~~~n 564 (861)
T 4f3t_A 493 FCKYAQGADSVEPMFRHLKNT----Y---AGLQLVVVILPGK-TPVYAEVKRVGDTVLGMATQCVQMKNVQRTTPQTLSN 564 (861)
T ss_dssp EEEECCSSSSHHHHHHHHHHH----S---TTCCEEEEEESSS-CTHHHHHHHHHHHTSCCEEEEEETHHHHSCCHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHH----C---CCCCEEEEEECCC-CCHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHH
T ss_conf 777258457899999999852----6---8983899995898-4289999997430678422899721225556789999
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEEECCCCHHH
Q ss_conf 99999851396233232110147776589991999996228999999998277999630688865337799971686276
Q 001466 745 VALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQEL 824 (1073)
Q Consensus 745 i~lKiN~KlGG~N~~l~~~~~~~~p~~~~~~tmiiG~DVsHp~~g~~~~pSiaavVaS~d~~~~~ky~~~~~~Q~~~~E~ 824 (1073)
|+||||+||||+||.+.+. ..|.+...+|||||+||+||++++...|||||||||+| .++++|.+.+++|.+++|+
T Consensus 565 i~lKiN~KlGG~n~~l~~~---~~~~~~~~~tmiiG~DV~H~~~~~~~~pSiaa~vaS~d-~~~~~y~~~~~~Q~~~~E~ 640 (861)
T 4f3t_A 565 LCLKINVKLGGVNNILLPQ---GRPPVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMD-AHPNRYCATVRVQQHRQEI 640 (861)
T ss_dssp HHHHHHHHTTCBCCEECST---TSCGGGGSCEEEEEEEEECCC----CCCEEEEEEEECS-SSSCCEEEEEEEESTTCCS
T ss_pred HHHHHHHHCCCCCEECCCC---CCCCCCCCCEEEEEEEECCCCCCCCCCCEEEEEEEECC-CCCCEEEEEEEECCCCCCH
T ss_conf 9999988619833044665---46534689658998772146888778865999999847-9856587899975899558
Q ss_pred HHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 55211003689766540579999999999980999944999825779157999999999999999995099999989999
Q 001466 825 IQDLFKTWQDPVRGAVSGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFV 904 (1073)
Q Consensus 825 i~dl~~~~~~p~~~~~~~~mi~e~L~~f~~~~~~~P~~IIiyRDGVSEgQf~~Vl~~El~~Ik~a~~~~~~~y~P~it~I 904 (1073)
|++| .+|++++|+.|++.++.+|++|||||||||||||.+|+++|+++|++||.+++.+|+|+||||
T Consensus 641 i~~l-------------~~~~~~~L~~~~~~~~~~P~~IiiyRDGVsegq~~~v~~~Ev~~i~~a~~~~~~~~~P~it~I 707 (861)
T 4f3t_A 641 IQDL-------------AAMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFQQVLHHELLAIREACIKLEKDYQPGITFI 707 (861)
T ss_dssp CTTH-------------HHHHHHHHHHHHHHHSCCCSEEEEEEESCCGGGHHHHHHHHHHHHHHHHHHHCTTCCCEEEEE
T ss_pred HHHH-------------HHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEE
T ss_conf 9989-------------999999999999982899845999926877688999999999999999998544779857999
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCEEECCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHH
Q ss_conf 99312223222248999887778888867304205666788562670235785454468637999439988988899999
Q 001466 905 VVQKRHHTRLFANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLT 984 (1073)
Q Consensus 905 vv~KRHhtRff~~~~~~~~~~~~~~N~~pGTVVD~~It~p~~~DFyL~Sh~~~qGTarPthY~VL~De~~~~~d~lq~lT 984 (1073)
||+||||||||+.+.++ ..++.+|++||||||++||||.+||||||||.++|||||||||+||+||+++++|+||+||
T Consensus 708 vv~Krh~tRff~~~~~~--~~~~~~N~~pGTvVD~~it~p~~~dFyL~Sh~~~qGTarPthY~Vl~d~~~~~~d~lq~lt 785 (861)
T 4f3t_A 708 VVQKRHHTRLFCTDKNE--RVGKSGNIPAGTTVDTKITHPTEFDFYLCSHAGIQGTSRPSHYHVLWDDNRFSSDELQILT 785 (861)
T ss_dssp EEECCSCCCEEESSGGG--CBTTTTBCCTTEEECSSSSCSSBCEEEEECSCCCSSCCCCEEEEEEEETTCCCHHHHHHHH
T ss_pred EEECCCCCEEEECCCCC--CCCCCCCCCCCEECCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHH
T ss_conf 99725663562258753--3344689898401157502588777999888514136667668998379999999999999
Q ss_pred HHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 995205642367644673678799999997530276768999--875577788898888777667899988778999001
Q 001466 985 NNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSG--SMTSGTIGRGGMGGGVGARSTRGPGVGAAVRPLPAL 1062 (1073)
Q Consensus 985 ~~LCy~y~r~t~sVSip~P~yYA~l~a~Rar~~~~~~~~~~~--s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1062 (1073)
|+|||+|+|||++||||+||||||++|+|||+|+.+...+++ |+.|+.+. . ....+...++.|
T Consensus 786 y~Lc~~y~~~t~~vsvpaP~yYA~~~a~R~r~~l~~~~~~~~~~~~~~~~~~-------------~--~~~~~~~~~~~v 850 (861)
T 4f3t_A 786 YQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHTSGQSN-------------G--RDHQALAKAVQV 850 (861)
T ss_dssp HHHTTCCTTSSBCCSSCHHHHHHHHHHHHHHHHHCCC-------------------------------CCSTTHHHHTCC
T ss_pred HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC-------------C--CCHHHHHHHHHH
T ss_conf 9986552104788877628899999999999751101356776654468876-------------6--553555445343
Q ss_pred CCCCCCCEEEC
Q ss_conf 11023680419
Q 001466 1063 KENVKRVMFYC 1073 (1073)
Q Consensus 1063 h~~~~~~M~y~ 1073 (1073)
|++++++||||
T Consensus 851 h~~~~~~M~y~ 861 (861)
T 4f3t_A 851 HQDTLRTMYFA 861 (861)
T ss_dssp CHHHHTTTTTC
T ss_pred HHHHCCCCEEC
T ss_conf 16551583039
No 2
>4f1n_A Kpago; argonaute, RNAI, RNAse H, RNA binding protein-RNA complex; 3.19A {Vanderwaltozyma polyspora}
Probab=1.00 E-value=1 Score=1498.68 Aligned_cols=838 Identities=24% Similarity=0.377 Sum_probs=676.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCC---------------------CEEEEEEEECCCCCC-------
Q ss_conf 9999877568789999999983369711478564998---------------------526656897287653-------
Q 001466 192 APPSSKSVRFPLRPGRGSTGTRCIVKANHFFAELPDK---------------------DLHQYDVTITPEVTS------- 243 (1073)
Q Consensus 192 ~p~~~~~~~~p~RP~~Gt~G~~v~l~tN~f~v~~~~~---------------------~iy~YdV~i~pe~~~------- 243 (1073)
.+.++....+|.||+|||.|++|.|+||||.+.+.+. .||+|+|+|.|+...
T Consensus 10 ~~~~~~~~~~p~Rp~yGt~G~~v~l~aN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~i~~~~~~~~~~~~~~~ 89 (1046)
T 4f1n_A 10 KEDTHAIYKVENRHDYGTKGTKVDILTNHILLAVGNDVPTEKIDKELVPKLDGWWKTAFIFTYHIDFKPQQKGPPRRGKP 89 (1046)
T ss_dssp --CCCCCCCCCBCCCCCCCSEEEEEEESEEEEECCTTSCTTTSCTTTSCCCCSTTTSCEEEEEEEEEC------------
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCC
T ss_conf 87761135478999889899678999637998547775433221112334443335415899889975645665444566
Q ss_pred -------CHHHHHHHHHHHHHHH-HHCCCCCCCEEECCCEEEECCCCC---CCCCEEEEEEE-----CCCCC--------
Q ss_conf -------0222999999999998-500498421561663278417789---99630899981-----59999--------
Q 001466 244 -------RGVNRAVMEQLVKLYR-ESHLGKRLPAYDGRKSLYTAGPLP---FLSKEFRITLL-----DDDDG-------- 299 (1073)
Q Consensus 244 -------k~~~r~i~~~l~~~~~-~~~~~~~~~~yDG~~~lys~~~L~---~~~~~~~v~~~-----~~~~~-------- 299 (1073)
+...++|+.+|+++.. ...+... +||||+++|||+.+|| +....+.|.+. +++++
T Consensus 90 ~~~~~~~~~k~~~ii~~ll~e~~~~~~~~~~-ia~d~~~~L~s~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 168 (1046)
T 4f1n_A 90 VPPQELSKPKKYELIEALLDEDEILYKYRDR-IAFNGEDTIYSHVPLEEFTLFDGCWEVSNKQKKKVVPGMGAPSNKASL 168 (1046)
T ss_dssp -----CCHHHHHHHHHHHHHSCTTTGGGTTS-EEECSSSEEEESSCGGGSTTCTTCCC----------------------
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCHHHHCCCC-EEECCCCCEEECCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCC
T ss_conf 7653221237999999999726135642886-046472216878767765357776698655334466776654433222
Q ss_pred ---CCCCCCCCEEEEEEEEEEEECHHHHHHHHCCCCCCCH-----HHHHHHHHHHHCCCCCCC---CCCCCC-CCCCCCC
Q ss_conf ---9998878489999999354074648987516899993-----789999999980499887---345565-4459999
Q 001466 300 ---QGGQRREREFKVVIKLAARADLHHLGLFLQGRQADAP-----QEALQVLDIVLRELPTTR---YCPVGR-SFYSPDL 367 (1073)
Q Consensus 300 ---~~~~~~~~~~~v~i~~~~~~~l~~l~~~l~~~~~~~~-----~~~lq~Lniilr~~~~~~---~~~iGr-~ff~~~~ 367 (1073)
.....++++|+|+|++++++++.+|.+||.+...+.+ .+++++|++||++.+... ..++|+ +||..+.
T Consensus 169 ~~~~~~~~~~~~~~V~i~~~~~i~l~dL~~~l~~~~~~~~~~~~~~~~i~aL~~il~~~~~~~~~~i~~vg~nkFF~~~~ 248 (1046)
T 4f1n_A 169 QKKIDPELEEMVSQITLKFSGKVGLKDIYNDTTTQDTEVQESRMSAIDKTCLLSLLGAKFMSTDDLIFQVQGNKFFIFNN 248 (1046)
T ss_dssp ---------CGGGGEEEEEEEEEEGGGGGSCSSCCCTTHHHHHHTCHHHHHHHHHHHHHHHCSSSCEEEETTTEEEECST
T ss_pred CCCCCCCCCCCEEEEEEEEEEECCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCC
T ss_conf 34555556684599999871051799999997289855443334167899999997556553589648757843046798
Q ss_pred -CCCCCCCCCEEEEEEEEEEEECCCCCEEEEEECCEEEEECC-----------------CCHHHHHHHHHCCCC------
Q ss_conf -99645899759983001210014780587540533347447-----------------519999999842799------
Q 001466 368 -GRRQPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEP-----------------LPVIDFVQQLLNRDV------ 423 (1073)
Q Consensus 368 -~~~~~lg~Gle~~~G~~~Svr~~~~~l~LniD~s~~~F~~~-----------------~~l~d~i~~~~~~~~------ 423 (1073)
....+|++|+|+|+|||+|||+++++|+||||+++++||++ ++|+|++.++++..+
T Consensus 249 ~~~~~~Lg~Gle~wrGffqSvRpa~~rLlLNvdvs~~aF~k~~~~~~~~~~~~~~~~~p~~lid~l~~~~~~~~~~~~~~ 328 (1046)
T 4f1n_A 249 FAKAIPFQIGGYLLQGFTVSLTHVYGGVALNTVSVPAPFIKHTKYLPGDPRFKNNEKEQFTLMDWIIECYHQSKAIRDIR 328 (1046)
T ss_dssp TCCEEECSSSEEEEEEEEEEEEEETTEEEEEEEEEEEEEECCSSSCTTSHHHHHCTTCCCCHHHHHHHHHHHHHHHHSSS
T ss_pred CCCCCCCCCCEEEEEEEEEEEEECCCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCC
T ss_conf 77510378817999767666785189408997255111784666676531000135688609999999863333322222
Q ss_pred ----CCCCCCHHHH-------HHHHHHHCCCEEEEEECC-------C-----CCCEEEEECCCCCCCCCEEEEECCC---
Q ss_conf ----9999996789-------999998159599993259-------8-----7733999435789987504541599---
Q 001466 424 ----SSRPLSDADR-------VKIKKALRGVRVEVTHRG-------N-----MRRKYRISGLTSQTTGELTFPVDES--- 477 (1073)
Q Consensus 424 ----~~~~~~~~~~-------~~i~~~Lkgl~V~~~~~~-------~-----~~r~~~I~gi~~~~a~~~~F~~~~~--- 477 (1073)
..+.++..++ .+++++|+||+|+++|.+ + ..+.++|.||+..++.+++|++++.
T Consensus 329 ~~~~~~~~~~~~d~~~f~~~~~kl~k~LKgLkV~vth~~~~~~~~g~~~~~~~~r~k~I~GLs~~~a~~~~F~~~~~~~~ 408 (1046)
T 4f1n_A 329 YNPKTAPPPSVKDLNYFVEKNTDISALLKGLKVYRPYINYSINKDGTPKPPRKRSSKGIVGFTRESAVSMRFNVLESSLK 408 (1046)
T ss_dssp CTTTTSCCCCSSHHHHHHHHCHHHHHHHTTCEECCTTCC--------------CCCEECCEECSSCSSSCC---------
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEECCCCCCC
T ss_conf 23223578755665445678899999848978999866754455665244346664698634689977319961687544
Q ss_pred -------C---CEEEHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf -------9---274299999988197667899837992458877322454267406843335699999999999823992
Q 001466 478 -------G---TLKSVVEYFYETYGFVIQHTQWPCLQVGNQQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRP 547 (1073)
Q Consensus 478 -------g---~~itV~~Yf~~~Y~i~L~~p~lP~v~~g~~~~~~ylP~Elc~i~~gQ~~~~kl~~~q~~~mik~a~~~P 547 (1073)
| +++||+|||+++|||+|+||+||||++|++ .+|||||||.|+|||+|+++|++ +++||++||++|
T Consensus 409 ~~~~~~~g~~~~~iTVadYFk~kYni~LkyP~LPcV~VG~~--~~ylPmElC~I~pGQr~~kKL~~--ts~MIKfAa~rP 484 (1046)
T 4f1n_A 409 KNSAPKPNEKPININTIDYFKRKYDITLKYPDMKLVNLGGK--NDVVPPECLTIVPGQKLKGQIFD--TKTYIDFSAIRP 484 (1046)
T ss_dssp --------------CHHHHHHHHSCCCCSCTTSCCEECSTT--TCEECGGGCCBCTTCBCCSCCCC--HHHHHHHHCCCH
T ss_pred CCCCCCCCCCCEEEEHHHHHHHHHCCCCCCCCCCEEEECCC--CCCCCCCEEEECCCCCCCCCCCC--HHHHHHHHCCCC
T ss_conf 45666677675278899999987394047999877997897--74213104796689624512351--789999875694
Q ss_pred HHHHHHHHHHHHH-----CCCCCCCCCCCCCEEECCCCEEEEEEECCCCCEEECCCCCC-------CCCCCCCCCEECCC
Q ss_conf 6789999999983-----25999821232263872652287637818994330589984-------33599675000127
Q 001466 548 HERERDIMQTVHH-----NAYHEDPYAREFGIKISEKLASVEARILPAPWLKYHDTGKE-------KDCLPQVGQWNMMN 615 (1073)
Q Consensus 548 ~~R~~~I~~~~~~-----~~~~~~~~l~~fGi~i~~~~~~v~gRvL~~P~i~y~~~~~~-------~~~~p~~G~Wn~~~ 615 (1073)
.+|++.|.+.... +.++.+++|++|| +|+.+|++|+|||||||.|+|+++... ..+.|++|+|||++
T Consensus 485 ~eR~~~I~~~~~~~~~~~l~~~~~~~l~~FG-~I~~~m~~V~gRVLppP~L~Yg~~~~~~~~~p~~~~~~p~~G~Wnm~~ 563 (1046)
T 4f1n_A 485 TEKFDLISRLSMPAIKRGLTDSEKEESSAPH-NSAYQFMRVPSRILDAPVVQFKESTFEYKDKSYGTKHEESKGNWNMKG 563 (1046)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCCC---------CCSSSCCEEEEEECCCCCEECSSCEECCCCCCSSSSGGGGTTBCCCTT
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCHHHHHCC-CCCCCEEEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 9999999999887541024666557678628-756850367788748975761687545555654344576678526888
Q ss_pred CEEEECCE-ECEEEEEEEC-C-C----CCHHHHHHHHHHHHHHHHHCCCCCCCC--CCCCC------C--CC--------
Q ss_conf 33530722-0526999946-8-8----556899999999999988429545899--92068------9--99--------
Q 001466 616 KKMVNGGT-VNHWICINFS-R-H----VQDSIARGFCFELAQMCYISGMAFNPE--PVIPP------I--SA-------- 670 (1073)
Q Consensus 616 ~kf~~~~~-i~~W~~v~~~-~-~----~~~~~~~~f~~~l~~~~~~~Gi~i~~~--p~~~~------~--~~-------- 670 (1073)
++|++++. +.+|.++++. . + ...+.+..|+..|++.|+.+||.+..+ |.+.. . ..
T Consensus 564 ~kf~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~Gm~i~~~~~p~~~~~~~~~~~~~~~~~~~~r~~ 643 (1046)
T 4f1n_A 564 HQFISTPAKQVNLRAIFINNANTAPPASMESELDISMDKFASDVKQLGVDFNVSGKPILINQFGPPIKKFQGGGRGGRGG 643 (1046)
T ss_dssp CCCSBCCSSCEEEEEEEEECSSSCCCGGGHHHHHHHHHHHHHHHHTTTCCEECCSCCEEEESCCSCBC------------
T ss_pred CEEECCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 87713786664079999727876665423899999999999999866985478778741213455431112334333233
Q ss_pred -------------------CHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECC-CCCCHHHHHHHHHCCCCCEEEEEE
Q ss_conf -------------------905599999999999986506999850999995089-984044555762113471013331
Q 001466 671 -------------------RPEHVEKVLKTRYHDAMTKLGQGKELDLLIVILPDN-NGSLYGDLKRICETDLGLVSQCCL 730 (1073)
Q Consensus 671 -------------------~~~~~~~~l~~~~~~~~~~~~~~~~~~lvlvilp~~-~~~~Y~~iK~~~d~~~GI~TQci~ 730 (1073)
..++.+..|..++++ . ..++|||||||++ +.++|..||++||+++||+||||+
T Consensus 644 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~---~~~~lvl~Ilp~~~~~~~Y~~IK~~~d~~~gV~TQcv~ 716 (1046)
T 4f1n_A 644 RGSRGGRGGRGAPSGPPTFETSPGEISLLNLLEN----I---PSNTYILYVLRRGNDSAVYDRLKYITDLKFGALNSCVV 716 (1046)
T ss_dssp ----------------CCCBCCTTHHHHHHHHHT----C---CTTEEEEEEESSSCCHHHHHHHHHHHTTTTCCCEEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH----C---CCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEE
T ss_conf 3333333333344443211123179999999974----5---89978999966888716899999976135781448984
Q ss_pred ECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC----CCCCEEEEEEEECCCCCCCCCCCCEEEEEEEECCC
Q ss_conf 02102343668999999998513962332321101477765----89991999996228999999998277999630688
Q 001466 731 TKHVFKMSKQYMANVALKINVKVGGRNTVLVDAISRRIPLV----SDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWP 806 (1073)
Q Consensus 731 ~~~~~k~~~q~~~Ni~lKiN~KlGG~N~~l~~~~~~~~p~~----~~~~tmiiG~DVsHp~~g~~~~pSiaavVaS~d~~ 806 (1073)
.+++.|.++||++||+||||+||||+||.|++.. ++.+ +..+|||||+||+|++++. .+||||||||+| .
T Consensus 717 ~~t~~k~~~q~~~NI~lKiN~KLGG~n~~l~~~~---~~~l~~~~~~~ptMiiG~DVtH~p~~~--~~SiaavVaS~d-~ 790 (1046)
T 4f1n_A 717 WDNFKKNSIQYNSNVVMKMNLKLLGSNHSLSIEN---NKLLIDKESNLPILVLGSDVTHYPEKD--QNSIASLVGSYD-D 790 (1046)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHTTCBCCEECTTG---GGGGEETTTTEECEEEEEEEECCSSTT--CEEEEEEEECCS-S
T ss_pred HHHHCCCCHHHHHHHHHHHHHHCCCEEEECCCCC---CCCCCCCCCCCCEEEEEEEEECCCCCC--CCEEEEEEEEEC-C
T ss_conf 2351354278999999999986098511436654---432344456773499853111179899--872669999987-9
Q ss_pred CCCCEEEEEEECCC-CHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH-CCCCCCEEEEEECCCCHHHHHHHHHHHHH
Q ss_conf 86533779997168-62765521100368976654057999999999998-09999449998257791579999999999
Q 001466 807 EVTKYAGLVCAQAH-RQELIQDLFKTWQDPVRGAVSGGMIKELLISFRRA-TGQKPQRIIFYRDGVSEGQFYQVLLYELD 884 (1073)
Q Consensus 807 ~~~ky~~~~~~Q~~-~~E~i~dl~~~~~~p~~~~~~~~mi~e~L~~f~~~-~~~~P~~IIiyRDGVSEgQf~~Vl~~El~ 884 (1073)
++++|.+.+++|.+ ++|+|++| ++|++++|+.|++. ++.+|++|||||||||||||.+|+++|++
T Consensus 791 ~~t~y~s~~~~Q~~~~~Eii~~L-------------~~~~~~~L~~y~~~n~~~lP~~IIiYRDGVSEGQf~~Vl~~Ev~ 857 (1046)
T 4f1n_A 791 KFTQFPGDYMLQDGPGEEIITNV-------------GSLMLNRLKIYQKHNNGKLPTKIMYFRDGVSVDQFSQVVKIEVK 857 (1046)
T ss_dssp SCCCCCEEEEEEEEETCCSCTTG-------------GGGHHHHHHHHHHTTTTCCCSSEEEEEESCCGGGHHHHHHTHHH
T ss_pred CCCEEEEEEEEECCCCCCHHHHH-------------HHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHH
T ss_conf 85858359998458872489889-------------99999999999986379998579998068765778999999999
Q ss_pred HHHHHHHHHC------CCCCCCEEEEEEEECCCCCCCCCCCCCCCC------CCCCCCCCCCEEECCCCCCCCCCCEEEC
Q ss_conf 9999999509------999998999999312223222248999887------7788888673042056667885626702
Q 001466 885 AIRKACASLE------PNYQPPVTFVVVQKRHHTRLFANNHHDRNA------VDRSGNILPGTVVDSKICHPTEFDFYLC 952 (1073)
Q Consensus 885 ~Ik~a~~~~~------~~y~P~it~Ivv~KRHhtRff~~~~~~~~~------~~~~~N~~pGTVVD~~It~p~~~DFyL~ 952 (1073)
+|++||.++. ++|+|+||||||+||||||||+.+.++.+. .++++|++||||||++||||.+||||||
T Consensus 858 ~Ik~a~~~~~~~~~~~~~y~Pkit~IVV~KRhhtRfF~~~~~~~d~~g~~~~~~~~~N~~pGTVVD~~It~p~~~DFyL~ 937 (1046)
T 4f1n_A 858 SIKESVRKFGPQLNGGNKYDPPVTCIATVKRNQVRFIPIQENAKNEKGEEVAVQSMGNVMPGTVVDRGITSVAHFDFFIQ 937 (1046)
T ss_dssp HHHHHHHHHTHHHHTSCCCCCCEEEEEEECSCSCCEEECCSEEECTTSCEEECEETTEECTTEEECSSSSCSSBEEEEEE
T ss_pred HHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCEEEEE
T ss_conf 99999998543003455779877999996576423511455543333443234566799997286466456674128997
Q ss_pred CCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 35785454468637999439988988899999995205642367644673678799999997530276768999875577
Q 001466 953 SHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSMTSGT 1032 (1073)
Q Consensus 953 Sh~~~qGTarPthY~VL~De~~~~~d~lq~lT~~LCy~y~r~t~sVSip~P~yYA~l~a~Rar~~~~~~~~~~~s~~~~~ 1032 (1073)
||.++|||||||||+|||||+++++|+||+|||+|||+|+|||++||||+||||||++|+|||+|+.....+..+..++
T Consensus 938 Sh~~~qGTarPthY~VL~De~~~~~d~lQ~LTy~LC~~y~r~t~sVsvPaP~yYAhlla~R~r~~~~~~~~~~~~~~~~- 1016 (1046)
T 4f1n_A 938 SHQALKGTGVPCHYWCLYDENQSTSDYLQEICNNLCYIFGRSTTSVKVPAPVYYADLLCTRATCFFKAGFELNMAQAPK- 1016 (1046)
T ss_dssp CSCCCSSSCCCEEEEEEEESSCCCHHHHHHHHHHTTSCCTTSSBCCSSCHHHHHHHHHHHHHHHHHHHTSHHHHHCC---
T ss_pred CCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC-
T ss_conf 0334777665737999967999998999999999865533517886255789999999999999998641202222455-
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf 78889888877766789998877899900111023680419
Q 001466 1033 IGRGGMGGGVGARSTRGPGVGAAVRPLPALKENVKRVMFYC 1073 (1073)
Q Consensus 1033 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~M~y~ 1073 (1073)
++.+ +. ......+++|+.||++|+++||||
T Consensus 1017 ~~~~----------~~-~~~~~~~~~~~~~~~~~~~~mf~i 1046 (1046)
T 4f1n_A 1017 EKGS----------KD-QPTVSKNVLLPQVNDNIKSVMYYI 1046 (1046)
T ss_dssp -------------------CCCHHHHSCCCCGGGTTSCTTC
T ss_pred CCCC----------CC-CCCCCCCCCCCHHHHHHCCCEEEC
T ss_conf 6677----------66-555676654511335540152359
No 3
>2yhb_A QDE-2, post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; 3.65A {Neurospora crassa}
Probab=1.00 E-value=1 Score=871.99 Aligned_cols=413 Identities=31% Similarity=0.516 Sum_probs=352.3
Q ss_pred CCCCEEEE-CCEECEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 12733530-72205269999468855689999999999998842954589992-06899990559999999999998650
Q 001466 613 MMNKKMVN-GGTVNHWICINFSRHVQDSIARGFCFELAQMCYISGMAFNPEPV-IPPISARPEHVEKVLKTRYHDAMTKL 690 (1073)
Q Consensus 613 ~~~~kf~~-~~~i~~W~~v~~~~~~~~~~~~~f~~~l~~~~~~~Gi~i~~~p~-~~~~~~~~~~~~~~l~~~~~~~~~~~ 690 (1073)
+++++|++ +++|++|+++++..+.+.+.++.|++.|.+.|+.+||.++.+.. +... .. ++.+..+ .+++..+.
T Consensus 2 ~~~~~f~~p~~~l~~W~vv~~~~~~~~~~~~~f~~~l~~~~~~~G~~i~~p~~~~~~~-~~-~~~~~~~--~~~~~~~~- 76 (437)
T 2yhb_A 2 AMAVKVARPCRKIEKWTYLELKGSKANEGVPQAMTAFAEFLNRTGIPINPRFSPGMSM-SV-PGSEKEF--FAKVKELM- 76 (437)
T ss_dssp ---CCCSBCCCCBCSEEEEEEECSSCCCCHHHHHHHHHHHHHHTTCCBCSCCCCCEEE-EC-CSSHHHH--HHHHHHHH-
T ss_pred CCCCEECCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEECCCCCCCEEC-CC-CCHHHHH--HHHHHHCC-
T ss_conf 9888862699727779999912777879999999999999987697717998764103-77-8658887--99875045-
Q ss_pred CCCCCCEEEEEEEECCCCCCHHHHHHHHHCCCCCEEEEEEECCCCCCCHH--HHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 69998509999950899840445557621134710133310210234366--8999999998513962332321101477
Q 001466 691 GQGKELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQ--YMANVALKINVKVGGRNTVLVDAISRRI 768 (1073)
Q Consensus 691 ~~~~~~~lvlvilp~~~~~~Y~~iK~~~d~~~GI~TQci~~~~~~k~~~q--~~~Ni~lKiN~KlGG~N~~l~~~~~~~~ 768 (1073)
.++||||||||+++.++|..||++||+++||+||||+.+++.|.++| |++||+||||+||||+||.|++. +
T Consensus 77 ---~~~~lvl~ilp~~~~~~Y~~iK~~~~~~~gI~TQcv~~~~~~k~~~q~s~~~Ni~lKiN~KlGG~n~~l~~~----~ 149 (437)
T 2yhb_A 77 ---SSHQFVVVLLPRKDVAIYNMVKRAADITFGVHTVCCVAEKFLSTKGQLGYFANVGLKVNLKFGGTNHNIKTP----I 149 (437)
T ss_dssp ---HTCSEEEEEESSCCHHHHHHHHHHHHTTSCCEEEEEEHHHHHCSTTHHHHHHHHHHHHHHHTTCBCCCCSSC----C
T ss_pred ---CCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCEEEEHHHHCCCCCHHHHHHHHHHHHHHHHCCCCEECCCC----C
T ss_conf ---898389999788983489999998701568541897266724766289999999999999849924023666----4
Q ss_pred CCCCCCCEEEEEEEECCCC---CC--CCCCCCEEEEEEEECCCCCCCEEEEEEECC-CCHHHHHHHHHCCCCCCCCCCHH
Q ss_conf 7658999199999622899---99--999982779996306888653377999716-86276552110036897665405
Q 001466 769 PLVSDRPTIIFGADVTHPH---PG--EDSSPSIAAVVASQDWPEVTKYAGLVCAQA-HRQELIQDLFKTWQDPVRGAVSG 842 (1073)
Q Consensus 769 p~~~~~~tmiiG~DVsHp~---~g--~~~~pSiaavVaS~d~~~~~ky~~~~~~Q~-~~~E~i~dl~~~~~~p~~~~~~~ 842 (1073)
|++.+.+|||||+||+||+ +| ....|||||||||+| .++++|.+.+++|. +++|+|++| +
T Consensus 150 ~~~~~~~tmiiG~DV~H~~~~~~g~~~~~~pSiaa~vaS~d-~~~~~y~~~~~~Q~~~~~E~i~~l-------------~ 215 (437)
T 2yhb_A 150 PLLAKGKTMVVGYDVTHPTNLAAGQSPASAPSIVGLVSTID-QHLGQWPAMVWNNPHGQESMTEQF-------------T 215 (437)
T ss_dssp HHHHTTCEEEEEEEECCCSCCCTTCCSTTSCEEEEEEECCS-TTCCCCCEEEEEETTTHHHHHHHH-------------H
T ss_pred CCCCCCCEEEEEEEEECCCCCCCCCCCCCCCEEEEEEEECC-CCCCEEEEEEEECCCCCHHHHHHH-------------H
T ss_conf 54577877999888752565567776789997999987349-996744027898677644489999-------------9
Q ss_pred HHHHHHHHHHHH---HCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCEEEEEEEECCCCCCCCCC
Q ss_conf 799999999999---8099994499982577915799999999999999999509999-998999999312223222248
Q 001466 843 GMIKELLISFRR---ATGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNY-QPPVTFVVVQKRHHTRLFANN 918 (1073)
Q Consensus 843 ~mi~e~L~~f~~---~~~~~P~~IIiyRDGVSEgQf~~Vl~~El~~Ik~a~~~~~~~y-~P~it~Ivv~KRHhtRff~~~ 918 (1073)
+|++++|+.|++ +++.+|++|||||||||||||.+|+++|+++|++||.+++++| +|+||||||+||||||||+.+
T Consensus 216 ~~~~~~L~~~~~~~~~~~~~P~rIiiyRDGVseGqf~~V~~~El~~i~~a~~~~~~~~~~p~it~Ivv~Krh~tRff~~~ 295 (437)
T 2yhb_A 216 DKFKTRLELWRSNPANNRSLPENILIFRDGVSEGQFQMVIKDELPLVRAACKLVYPAGKLPRITLIVSVKRHQTRFFPTD 295 (437)
T ss_dssp HHHHHHHHHHHTCGGGTTCCCSEEEEEEESCCTTTHHHHHHHTHHHHHHHHHHHSCTTCCCEEEEEEEC-----------
T ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCEECCCC
T ss_conf 99999999998655433799863899917756677999999999999999998504367987799999714553254677
Q ss_pred CCCCCCCC-CCCCCCCCEEECCCCCCCCCCCEEECCCCCCCCCCCCCEEEEEECCC------CCCHHHHHHHHHHHHCCC
Q ss_conf 99988777-88888673042056667885626702357854544686379994399------889888999999952056
Q 001466 919 HHDRNAVD-RSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDEN------KFTADGLQSLTNNLCYTY 991 (1073)
Q Consensus 919 ~~~~~~~~-~~~N~~pGTVVD~~It~p~~~DFyL~Sh~~~qGTarPthY~VL~De~------~~~~d~lq~lT~~LCy~y 991 (1073)
..+ .+ +++||+||||||++||||.+||||||||.++|||+|||||+||+||+ ++++|+||+|||+|||+|
T Consensus 296 ~~~---~~~~~~N~~pGTvVD~~it~p~~~dFyL~Sh~~~qGTarPthY~Vl~de~f~~~~~~~~~d~lq~lTy~Lc~~y 372 (437)
T 2yhb_A 296 PKH---IHFKSKSPKEGTVVDRGVTNVRYWDFFLQAHASLQGTARSAHYTVLVDEIFRADYGNKAADTLEQLTHDMCYLF 372 (437)
T ss_dssp -----------------------------------------------CEEEEEESSHHHHHGGGHHHHHHHHHHHHHTC-
T ss_pred CCC---CCCCCCCCCCCEEECCCCCCCCCCEEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 543---34466899985571564467777328997331210468763899993785432357999899999999987752
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 423676446736787999999975302767689--998755777888988887776678999887789990011102368
Q 001466 992 ARCTRSVSIVPPAYYAHLAAFRARFYMEPETSD--SGSMTSGTIGRGGMGGGVGARSTRGPGVGAAVRPLPALKENVKRV 1069 (1073)
Q Consensus 992 ~r~t~sVSip~P~yYA~l~a~Rar~~~~~~~~~--~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 1069 (1073)
+|||++||||||+||||++|+|||+|+.+...+ ++|+.++++ + .+...++++|++|+++
T Consensus 373 ~r~t~sVsipaP~yYAh~~a~R~r~~l~~~~~~~~~~~~~~~~~-------------~------~~~~~~~~~~~~l~~~ 433 (437)
T 2yhb_A 373 GRATKAVSICPPAYYADLVCDRARIHQKELFDALDENDSVKTDD-------------F------ARWGNSGAVHPNLRNS 433 (437)
T ss_dssp ---------CHHHHHHHHHHHHHHHHCHHHHHHHHHTSCCCHHH-------------H------HHHHHHTSCCGGGTTS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC-------------C------CCCCCCCCCCHHHCCC
T ss_conf 03158877487899999999999987454115777777667777-------------4------3222346659766378
Q ss_pred EEEC
Q ss_conf 0419
Q 001466 1070 MFYC 1073 (1073)
Q Consensus 1070 M~y~ 1073 (1073)
||||
T Consensus 434 mfyl 437 (437)
T 2yhb_A 434 MYYI 437 (437)
T ss_dssp CTTC
T ss_pred CEEC
T ss_conf 3569
No 4
>1yvu_A Hypothetical protein AQ_1447; RNAse H fold, RNA binding protein, gene regulation; 2.90A {Aquifex aeolicus} SCOP: b.34.14.1 c.55.3.10 PDB: 2f8s_A 2f8t_A 2nub_A
Probab=1.00 E-value=1 Score=864.69 Aligned_cols=659 Identities=14% Similarity=0.144 Sum_probs=496.4
Q ss_pred EEEEEEEECC-CCCEE-EEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEECCCEEEECCCCCCCCCEEEEEEE
Q ss_conf 7114785649-98526-656897287653022299999999999850049842156166327841778999630899981
Q 001466 217 KANHFFAELP-DKDLH-QYDVTITPEVTSRGVNRAVMEQLVKLYRESHLGKRLPAYDGRKSLYTAGPLPFLSKEFRITLL 294 (1073)
Q Consensus 217 ~tN~f~v~~~-~~~iy-~YdV~i~pe~~~k~~~r~i~~~l~~~~~~~~~~~~~~~yDG~~~lys~~~L~~~~~~~~v~~~ 294 (1073)
..|.|++... ..+-| .+ .-+-|+...++++.-|+..+. ..++.|......|++.+...+ .+-....
T Consensus 6 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 73 (706)
T 1yvu_A 6 LLNLYRIEYRPKDTTFTVF--KPTHEIQKEKLNKVRWRVFLQ--------TGLPTFRREDEFWCAGKVEKD--TLYLTLS 73 (706)
T ss_dssp EESEEEEEECCSSCEEBCC--EESSCCCHHHHHHHHHHHHHH--------HCSCEEEETTEEEESSCCTTC--CCEEEEC
T ss_pred HHHHHEEEECCCCCEEEEE--CCHHHHHHHHHHHEEEEEEEE--------CCCCCCCCCCCCEECCCCCCC--EEEEECC
T ss_conf 5354425513677336763--450788787641201476510--------178652015310343520132--4899817
Q ss_pred CCCCCCCCCCCCCEEEEEEEEEEEECHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC-
Q ss_conf 5999999988784899999993540746489875168999937899999999804998873455654459999996458-
Q 001466 295 DDDDGQGGQRREREFKVVIKLAARADLHHLGLFLQGRQADAPQEALQVLDIVLRELPTTRYCPVGRSFYSPDLGRRQPL- 373 (1073)
Q Consensus 295 ~~~~~~~~~~~~~~~~v~i~~~~~~~l~~l~~~l~~~~~~~~~~~lq~Lniilr~~~~~~~~~iGr~ff~~~~~~~~~l- 373 (1073)
++ . +|+|++++++..- .-..+.+++|+++++|+.. ..++..+||+||++. ....+
T Consensus 74 ~~----------~--~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~-~l~~~~igr~~~~~~--~~~~i~ 129 (706)
T 1yvu_A 74 NG----------E--IVELKRVGEEEFR---------GFQNERECQELFRDFLTKT-KVKDKFISDFYKKFR--DKITVQ 129 (706)
T ss_dssp SS----------S--CEEEEECCCEECC---------CCSCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHH--HHHEEE
T ss_pred CC----------C--EEEEEEEEEEECC---------CCCCCHHHHHHHHHHHHHC-CCHHHHHCCCCCCCC--CCCCCC
T ss_conf 99----------7--8999999886156---------7899989999999999975-774755172445833--562056
Q ss_pred --CCCEEEEEEEEEEEECCC-CCEEEEEECCEEEEECCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEC
Q ss_conf --997599830012100147-80587540533347447519999999842799999999678999999815959999325
Q 001466 374 --GEGLESWRGFYQSIRPTQ-MGLSLNIDMSSTAFIEPLPVIDFVQQLLNRDVSSRPLSDADRVKIKKALRGVRVEVTHR 450 (1073)
Q Consensus 374 --g~Gle~~~G~~~Svr~~~-~~l~LniD~s~~~F~~~~~l~d~i~~~~~~~~~~~~~~~~~~~~i~~~Lkgl~V~~~~~ 450 (1073)
.+++|+|+||..||+..+ ++++||+|++|+ |.+..+|+|+|.+ ... .. ..+..+|.
T Consensus 130 ~~~~~l~iwPG~~tsi~~~e~~~~~L~~DvshK-vlr~~Tvld~l~~-~~~------~~-------------~~~~~~y~ 188 (706)
T 1yvu_A 130 GKNRKIALIPEVNEKVLKSEEGYFLLHLDLKFR-IQPFETLQTLLER-NDF------NP-------------KRIRVKPI 188 (706)
T ss_dssp CSSCEEEEEEEEEEEEEEBSSSCEEEEEEEEEE-EEESSCHHHHHHH-CCC------CC-------------TTCEEEET
T ss_pred CCCCCEEECCCEEEEEEECCCCCEEEEEEEEEE-ECCCCHHHHHHHH-HHH------CC-------------HHHHHHCC
T ss_conf 778767981686889885267875999973404-5566539999997-230------46-------------56886432
Q ss_pred CCCCCEE--EEECC-CCCCCCCEEEEECCCCCEEEHHHHHHHHCCCC--------CCCCCCCEEEECCCCCCCCCCCCCE
Q ss_conf 9877339--99435-78998750454159992742999999881976--------6789983799245887732245426
Q 001466 451 GNMRRKY--RISGL-TSQTTGELTFPVDESGTLKSVVEYFYETYGFV--------IQHTQWPCLQVGNQQRPNYLPMEVC 519 (1073)
Q Consensus 451 ~~~~r~~--~I~gi-~~~~a~~~~F~~~~~g~~itV~~Yf~~~Y~i~--------L~~p~lP~v~~g~~~~~~ylP~Elc 519 (1073)
+++| +|.++ ++...+..+|. + |..+| ||+++|+++ .+.+.+|++..+. +. .|+++|
T Consensus 189 ---n~ty~~riddi~~~~~~P~~~f~-~--g~~iS---Yyk~~~~~~q~ll~~r~~~~~~~~~~v~~~--~~--~p~~lL 255 (706)
T 1yvu_A 189 ---GIDFVGRVQDVFKAKEKGEEFFR-L--CMERS---THKSSKKAWEELLKNRELREKAFLVVLEKG--YT--YPATIL 255 (706)
T ss_dssp ---TCCCCEEEEEEEESTTSCHHHHH-H--HHHTC---SSHHHHHHHHHHHHCHHHHHHCEEEEETTS--CE--EEGGGE
T ss_pred ---CCEECCCCCCCCCCCCCCCEEEC-C--CCCCC---EEECCCCCCHHHHHCCCCCCCCCEEEECCC--CC--CCCEEE
T ss_conf ---55633365740046889513842-8--99755---585146754144430244567724884268--87--786443
Q ss_pred EECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCEEEEEEECCCCCEEECCCC
Q ss_conf 74068433356999999999998239926789999999983259998212322638726522876378189943305899
Q 001466 520 KIVEGQRYSKRLNERQITALLKVTCQRPHERERDIMQTVHHNAYHEDPYAREFGIKISEKLASVEARILPAPWLKYHDTG 599 (1073)
Q Consensus 520 ~i~~gQ~~~~kl~~~q~~~mik~a~~~P~~R~~~I~~~~~~~~~~~~~~l~~fGi~i~~~~~~v~gRvL~~P~i~y~~~~ 599 (1073)
.. --+..+|+++|+++|+++++.+|.+|.+.|.++++.+ +++|+.|||+|+++|++|+|||||+|+|.+..+.
T Consensus 256 ~p---lc~~t~Ltd~q~~~mik~t~~~P~~R~~~i~~~~~~~----~~~L~~fGi~i~~~~~~v~gRVLp~P~i~~~~g~ 328 (706)
T 1yvu_A 256 KP---VLTYENLEDEERNEVADIVRMEPGKRLNLIRYILRRY----VKALRDYGWYISPEEERAKGKLNFKDTVLDAKGK 328 (706)
T ss_dssp EE---CCCCC------HHHHTSTTSCCHHHHHHHHHHHHHHH----HHHHHTTTEEECSSCEECCEECCCCCCEECSSCC
T ss_pred CC---CCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHH----HHHHHHCCCEECCCEEECCCEECCCCEEECCCCC
T ss_conf 00---1213799999999999998259999999999999998----9999976988888642213687389506647897
Q ss_pred CCCCCCCCCCCEECCCCEEEECCEECE---EEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 843359967500012733530722052---69999468855689999999999998842954589992068999905599
Q 001466 600 KEKDCLPQVGQWNMMNKKMVNGGTVNH---WICINFSRHVQDSIARGFCFELAQMCYISGMAFNPEPVIPPISARPEHVE 676 (1073)
Q Consensus 600 ~~~~~~p~~G~Wn~~~~kf~~~~~i~~---W~~v~~~~~~~~~~~~~f~~~l~~~~~~~Gi~i~~~p~~~~~~~~~~~~~ 676 (1073)
......+..+.|+++ .+|+.++.++. |.++ +..+ +..++.|++.|.+.|+.+||.++.++...... +.++
T Consensus 329 ~~~~~~~~~~~~~~~-~~~~~~~~l~~~~lW~~i-~~~~--~~~~~~f~~~L~~~~~~~G~~i~~p~~~~~~~---~~~~ 401 (706)
T 1yvu_A 329 NTKVITNLRKFLELC-RPFVKKDVLSVEIISVSV-YKKL--EWRKEEFLKELINFLKNKGIKLKIKGKSLILA---QTRE 401 (706)
T ss_dssp EECCSSCCHHHHHHC-CCCCSCSEEEEEEEEEEC--------CHHHHHHHHHHHHHHTTTCEEEEEEEEEEEC---SSTT
T ss_pred CCEECCCCCCCCCCC-CCEECCCCCCCCEEEEEE-ECCH--HHHHHHHHHHHHHHHHHCCCEECCCCCCCCCC---HHHH
T ss_conf 430236875430003-741114325643389998-1661--68999999999999987496206874223340---0199
Q ss_pred HHHHHHHHHHHHHCCCCCCCEEEEEEEECC-------CCCCHHHHHHHHHCCCCCEEEEEEECCCCCC-CHHHHHHHHHH
Q ss_conf 999999999986506999850999995089-------9840445557621134710133310210234-36689999999
Q 001466 677 KVLKTRYHDAMTKLGQGKELDLLIVILPDN-------NGSLYGDLKRICETDLGLVSQCCLTKHVFKM-SKQYMANVALK 748 (1073)
Q Consensus 677 ~~l~~~~~~~~~~~~~~~~~~lvlvilp~~-------~~~~Y~~iK~~~d~~~GI~TQci~~~~~~k~-~~q~~~Ni~lK 748 (1073)
..++.+.....+ ..+++|+|||+|++ +.++|..||++|+ ++||+||||+.+++.+. ..|++.||+||
T Consensus 402 ~~~~~l~~~~~~----~~~~qlvlvIlp~~~~~~~~~~~~~Y~~IK~~~~-~~GI~TQcv~~~tl~~~~~~q~~~NI~lk 476 (706)
T 1yvu_A 402 EAKEKLIPVINK----IKDVDLVIVFLEEYPKVDPYKSFLLYDFVKRELL-KKMIPSQVILNRTLKNENLKFVLLNVAEQ 476 (706)
T ss_dssp HHHHHHHHHHTT----TSSCSEEEEEEC----------CHHHHHHHHHHH-HTTCCCEEEEHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC----CCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHH-CCCCCEEEEEHHHCCCCCHHHHHHHHHHH
T ss_conf 999999987500----5899589999777444455567547999999985-28985499801021665307899999999
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEEEEECCCC--CCCEEEEEEECCCCHHHHH
Q ss_conf 98513962332321101477765899919999962289999999982779996306888--6533779997168627655
Q 001466 749 INVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPE--VTKYAGLVCAQAHRQELIQ 826 (1073)
Q Consensus 749 iN~KlGG~N~~l~~~~~~~~p~~~~~~tmiiG~DVsHp~~g~~~~pSiaavVaS~d~~~--~~ky~~~~~~Q~~~~E~i~ 826 (1073)
||+||||+||.|... .+.+|||||+||+||+.+. ..||++|+|||+| .. .++|.+....| .++|+++
T Consensus 477 iN~KLGG~nw~L~~~--------~~~~tmiIGiDVsH~~~~~-~~pSv~g~vas~d-~~g~~~~~~~~~~~q-~~~ei~~ 545 (706)
T 1yvu_A 477 VLAKTGNIPYKLKEI--------EGKVDAFVGIDISRITRDG-KTVNAVAFTKIFN-SKGELVRYYLTSYPA-FGEKLTE 545 (706)
T ss_dssp HHHHTTCCSCEESCC--------TTCCSEEEEECEEECCCSS-SCCCEEEEEEEEC-TTSCEEEEEEEEECS-CTTHHHH
T ss_pred HHHHHCCEEEEECCC--------CCCCEEEEEEEEECCCCCC-CCCEEEEEEEEEC-CCCCEEEEEEEECCC-CCCHHHH
T ss_conf 999849861560258--------8885599999886168788-8856999999985-899889999873366-6426999
Q ss_pred HHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEE
Q ss_conf 21100368976654057999999999998099994499982577915799999999999999999509999998999999
Q 001466 827 DLFKTWQDPVRGAVSGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVV 906 (1073)
Q Consensus 827 dl~~~~~~p~~~~~~~~mi~e~L~~f~~~~~~~P~~IIiyRDGVSEgQf~~Vl~~El~~Ik~a~~~~~~~y~P~it~Ivv 906 (1073)
++ +..+|+.|.++++.+|++|||||||||| ++|+++|++||.+ |.|+||||||
T Consensus 546 ~l----------------~~~~l~~~~~~~~~~P~rIIiyRDGVse-------~~El~~Ik~A~~~----~~pkit~IvV 598 (706)
T 1yvu_A 546 KA----------------IGDVFSLLEKLGFKKGSKIVVHRDGRLY-------RDEVAAFKKYGEL----YGYSLELLEI 598 (706)
T ss_dssp HH----------------HHHHHHHHHHTTCCTTCEEEEEESSCCC-------HHHHHHHHHHHHH----HTCEEEEEEE
T ss_pred HH----------------HHHHHHHHHHHCCCCCCEEEEEECCCCC-------HHHHHHHHHHHHH----CCCCEEEEEE
T ss_conf 99----------------9999999998649998379999688885-------8999999999997----2994799999
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCEEECCCCC-CCCCCCCCEEE-EEECCCCCCHHHHHHHH
Q ss_conf 31222322224899988777888886730420566678856267023578-54544686379-99439988988899999
Q 001466 907 QKRHHTRLFANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAG-IQGTSRPAHYH-VLWDENKFTADGLQSLT 984 (1073)
Q Consensus 907 ~KRHhtRff~~~~~~~~~~~~~~N~~pGTVVD~~It~p~~~DFyL~Sh~~-~qGTarPthY~-VL~De~~~~~d~lq~lT 984 (1073)
+||||||||+.+ ||+||||||. ..+||||++|.+ +|||+||+||+ |++|+ ++|+||+||
T Consensus 599 ~Krh~tRfF~~~-----------np~pGTvVD~-----~~~~ffL~ss~~~~qGT~rPthY~vv~~D~---~~d~Lq~lt 659 (706)
T 1yvu_A 599 IKRNNPRFFSNE-----------KFIKGYFYKL-----SEDSVILATYNQVYEGTHQPIKVRKVYGEL---PVEVLCSQI 659 (706)
T ss_dssp ECSSCCCEECSC-----------SCCTTEEEEB-----SSSEEEECCSCCCSTTCCCCEEEEEEECSS---CHHHHHHHH
T ss_pred EECCCEEEECCC-----------CCCCEEEEEC-----CCCEEEEEECCCCCCCCCCCEEEEEEECCC---CHHHHHHHH
T ss_conf 704671587889-----------9997389972-----797699994477667887887999991899---999999999
Q ss_pred HHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf 9952056423676446736787999999975302767
Q 001466 985 NNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPE 1021 (1073)
Q Consensus 985 ~~LCy~y~r~t~sVSip~P~yYA~l~a~Rar~~~~~~ 1021 (1073)
|+|||+|+|||++||||+|+||||++|+|++.+++++
T Consensus 660 y~Lc~ly~r~t~svslPaPiyYAhllA~r~~~~~~p~ 696 (706)
T 1yvu_A 660 LSLTLMNYSSFQPIKLPATVHYSDKITKLMLRGIEPI 696 (706)
T ss_dssp HHGGGGGCCSSSCCCSCTTTTTHHHHHHHHHTCSSCC
T ss_pred HHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC
T ss_conf 9989860164899604758999999999997427811
No 5
>1u04_A Argonaute, hypothetical protein PF0537; RNAI, silencing, PIWI, PAZ, RISC, slicer, RNAse H hydrolase-gene regulation complex; 2.25A {Pyrococcus furiosus} SCOP: b.34.14.1 c.55.3.10 PDB: 1z25_A 1z26_A
Probab=1.00 E-value=1 Score=764.64 Aligned_cols=661 Identities=15% Similarity=0.095 Sum_probs=484.2
Q ss_pred CCEEEEEEEEEEC---CCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEECCCE-EEECCCCCCCCCE
Q ss_conf 3369711478564---99852665689728765302229999999999985004984215616632-7841778999630
Q 001466 213 RCIVKANHFFAEL---PDKDLHQYDVTITPEVTSRGVNRAVMEQLVKLYRESHLGKRLPAYDGRKS-LYTAGPLPFLSKE 288 (1073)
Q Consensus 213 ~v~l~tN~f~v~~---~~~~iy~YdV~i~pe~~~k~~~r~i~~~l~~~~~~~~~~~~~~~yDG~~~-lys~~~L~~~~~~ 288 (1073)
++.|.+|||++.. |+ .+|+|+|++.|++..+ ....++. .+++. +| ..+|||..- ||+.++|+.
T Consensus 3 ~~~~~~n~~~~~~~~~~~-~~y~y~v~~~p~~~~~-~~~~~~~----~~~~~-~g--~~~fdg~~~~l~~~~~l~~---- 69 (771)
T 1u04_A 3 KAIVVINLVKINKKIIPD-KIYVYRLFNDPEEELQ-KEGYSIY----RLAYE-NV--GIVIDPENLIIATTKELEY---- 69 (771)
T ss_dssp EEEEEBSEEEBCGGGSCS-CEEEEEC-------------CCHH----HHHHH-TT--EEEEETTTTEEEESSCCCC----
T ss_pred CEEEEEEEEEEECCCCCC-EEEEEEEECCCHHHHH-HHHHHHH----HHHHH-CC--CEEECCCCEEEECCCEECC----
T ss_conf 069994068873246887-0599986238758889-9998999----87865-37--1896475203222532146----
Q ss_pred EEEEEECCCCCCCCCCCCCEEEEEEEEEEEECHHHHHHHHCCCCCCCHHHHHHHHHHHHCCC-CCCC-----CCCCCCCC
Q ss_conf 89998159999999887848999999935407464898751689999378999999998049-9887-----34556544
Q 001466 289 FRITLLDDDDGQGGQRREREFKVVIKLAARADLHHLGLFLQGRQADAPQEALQVLDIVLREL-PTTR-----YCPVGRSF 362 (1073)
Q Consensus 289 ~~v~~~~~~~~~~~~~~~~~~~v~i~~~~~~~l~~l~~~l~~~~~~~~~~~lq~Lniilr~~-~~~~-----~~~iGr~f 362 (1073)
....++++++.+++++ +|++|+++|.. ...+ +..+||+|
T Consensus 70 ----------------~~~~~~~~~~~~~~~~-------------------~~~~n~i~r~~l~~~~~~~~~l~~~~r~~ 114 (771)
T 1u04_A 70 ----------------EGEFIPEGEISFSELR-------------------NDYQSKLVLRLLKENGIGEYELSKLLRKF 114 (771)
T ss_dssp ----------------SSCCEEEEEECGGGSC-------------------HHHHHHHHHHHHHHTTCSHHHHHHHHTTT
T ss_pred ----------------CCCEEEEEEEECCEEC-------------------HHHHHHHHHHHHHHCCCCHHHHHHHHHHC
T ss_conf ----------------8973789999904402-------------------99999999999987462058899976620
Q ss_pred CCCCCCCCCCCCCCEEEEEEEEEEEECCCCCEEEEEECCEEEEECCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 59999996458997599830012100147805875405333474475199999998427999999996789999998159
Q 001466 363 YSPDLGRRQPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVQQLLNRDVSSRPLSDADRVKIKKALRG 442 (1073)
Q Consensus 363 f~~~~~~~~~lg~Gle~~~G~~~Svr~~~~~l~LniD~s~~~F~~~~~l~d~i~~~~~~~~~~~~~~~~~~~~i~~~Lkg 442 (1073)
|++ ..+ ..+++|.|+..|||..+++++||+|++|++ .+..+|+|++.+.. .....+...+.|
T Consensus 115 ~~~-----~~~-~~~~~~~~~~tsi~~~e~~~ll~~di~hkv-~r~~t~~d~~~~~~-----------~~~~~~~~~~~g 176 (771)
T 1u04_A 115 RKP-----KTF-GDYKVIPSVEMSVIKHDEDFYLVIHIIHQI-QSMKTLWELVNKDP-----------KELEEFLMTHKE 176 (771)
T ss_dssp SCC-----EEE-TTEEEEEEEEEEEEECSSCEEEEEEEEEEE-EESSCHHHHTTTCH-----------HHHHHHHHHSTT
T ss_pred CCC-----CCC-CCCEEEECCEEEEEECCCCEEEEEEEEEEE-EEHHHHHHHHHHHH-----------HHHHHHHHHCCC
T ss_conf 798-----334-662799873466885378438999866567-55567999999999-----------999988873567
Q ss_pred CEEEEE--------ECCCCCCEEEEECCCCCCCCCE--EE---EECCCC-CEEEHHHHHHHHCCCCCCCCCCCEEEECCC
Q ss_conf 599993--------2598773399943578998750--45---415999-274299999988197667899837992458
Q 001466 443 VRVEVT--------HRGNMRRKYRISGLTSQTTGEL--TF---PVDESG-TLKSVVEYFYETYGFVIQHTQWPCLQVGNQ 508 (1073)
Q Consensus 443 l~V~~~--------~~~~~~r~~~I~gi~~~~a~~~--~F---~~~~~g-~~itV~~Yf~~~Y~i~L~~p~lP~v~~g~~ 508 (1073)
..|.+. |.-+ +.+|+|+. .+...+.. +| ..+ ++ ..+++.+||+++|+| ++++||+|....+
T Consensus 177 ~~~~~~~~~~~~~vy~~n-~~~Y~~~~-~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~y~~~y~i--~d~~QPllvs~~~ 251 (771)
T 1u04_A 177 NLMLKDIASPLKTVYKPC-FEEYTKKP-KLDHNQEIVKYWYNYHIE-RYWNTPEAKLEFYRKFGQ--VDLKQPAILAKFA 251 (771)
T ss_dssp TCEEEETTSTTCCEEEEC-BCTTSSCB-CEECCHHHHHHHHHHHHH-HHCCSHHHHHHHHHHHCS--CCTTSCEEEEEES
T ss_pred CEEEEECCCCCEEEEECC-CCEEECCC-CCCCCCCCHHHEECEEEC-CCCCCCCHHHHHHHHCCC--CCCCCCEEEECCH
T ss_conf 378531134442686046-62441588-512378985440130213-778874116878876486--7678876985144
Q ss_pred C-------CCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHC-----CCC--CCCCCCCCCE
Q ss_conf 8-------7732245426740684333569999999999982399267899999999832-----599--9821232263
Q 001466 509 Q-------RPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPHERERDIMQTVHHN-----AYH--EDPYAREFGI 574 (1073)
Q Consensus 509 ~-------~~~ylP~Elc~i~~gQ~~~~kl~~~q~~~mik~a~~~P~~R~~~I~~~~~~~-----~~~--~~~~l~~fGi 574 (1073)
+ +.+||.||||.++. ...+++.+.+++|..++...|.+|.+.+.++.+.+ .-+ ....|+.|+
T Consensus 252 ~~~~~~~~~~i~LiPELc~~TG---~~~~~~~~~MK~la~~trl~P~~R~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~- 327 (771)
T 1u04_A 252 SKIKKNKNYKIYLLPQLVVPTY---NAEQLESDVAKEILEYTKLMPEERKELLENILAEVDSDIIDKSLSEIEVEKIAQ- 327 (771)
T ss_dssp CC-----CCCEEECTTTEEEEE---EGGGC----CCHHHHHHCCCHHHHHHHHHHHHHHCCCSSBCSSCCEEEEEECCG-
T ss_pred HHCCCCCCCEEEECHHHHHHCC---CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH-
T ss_conf 3246788960364247653367---435666899999999877798999999999999861544307988999975554-
Q ss_pred EECCCCEEEEEEECCCCCEEECCCCCCCCCCCCCCCEE--CCCCEEEECC----------EECEEEEEEECCCCCHHHHH
Q ss_conf 87265228763781899433058998433599675000--1273353072----------20526999946885568999
Q 001466 575 KISEKLASVEARILPAPWLKYHDTGKEKDCLPQVGQWN--MMNKKMVNGG----------TVNHWICINFSRHVQDSIAR 642 (1073)
Q Consensus 575 ~i~~~~~~v~gRvL~~P~i~y~~~~~~~~~~p~~G~Wn--~~~~kf~~~~----------~i~~W~~v~~~~~~~~~~~~ 642 (1073)
.++.. +.|.++++.+-.|...+. ..+..+.|. +++.+++.+. .|+.|.++ ..+. .+.+.
T Consensus 328 ~l~~~-~~v~~~~~~~~~i~~~~~-----~~~~~adW~~~~~~~~~~~~~~~p~~l~~~~~i~~wil~-~~~~--~~~~~ 398 (771)
T 1u04_A 328 ELENK-IRVRDDKGNSVPISQLNV-----QKSQLLLWTNYSRKYPVILPYEVPEKFRKIREIPMFIIL-DSGL--LADIQ 398 (771)
T ss_dssp GGGSS-EEEECSSSCEEESCCC-------------CGGGGSCCCCCCCCSBCCTHHHHCCCCCEEEEE-ETTS--CHHHH
T ss_pred CCCCC-CCCCCCCCCCCCEEECCC-----CCCCCCCCCHHHCCCCCEECCCCHHHHHCCCCCCEEEEE-ECCC--HHHHH
T ss_conf 11767-500254566453263276-----777667760553778511046542655043555359999-5771--68899
Q ss_pred HHH---------HHHHHHHHHCC-----------CCCCCC-----CC-CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 999---------99999988429-----------545899-----92-06899990559999999999998650699985
Q 001466 643 GFC---------FELAQMCYISG-----------MAFNPE-----PV-IPPISARPEHVEKVLKTRYHDAMTKLGQGKEL 696 (1073)
Q Consensus 643 ~f~---------~~l~~~~~~~G-----------i~i~~~-----p~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 696 (1073)
+|+ ..|.+.+..++ +.+... +. +.....+.+.++..++.+.++.. ...+
T Consensus 399 ~f~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~p~~~~~~~~~~i~~dl~~~~~i~~~l~~~~~~~~-----~~~~ 473 (771)
T 1u04_A 399 NFATNEFRELVKSMYYSLAKKYNSLAKKARSTNEIGLPFLDFRGKEKVITEDLNSDKGIIEVVEQVSSFMK-----GKEL 473 (771)
T ss_dssp HHHHHHHHHHHHHHCC-----------------------------CEEEEECTTSHHHHHHHHHHHHHHHT-----TCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHCC-----CCCC
T ss_conf 88888766677899998753223101103566422578733346751431565534779999999997515-----7898
Q ss_pred EEEEEEEE-CCCCCCHHHHHHHHHCCCCCEEEEEEECCCCCC----C-----HHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 09999950-899840445557621134710133310210234----3-----6689999999985139623323211014
Q 001466 697 DLLIVILP-DNNGSLYGDLKRICETDLGLVSQCCLTKHVFKM----S-----KQYMANVALKINVKVGGRNTVLVDAISR 766 (1073)
Q Consensus 697 ~lvlvilp-~~~~~~Y~~iK~~~d~~~GI~TQci~~~~~~k~----~-----~q~~~Ni~lKiN~KlGG~N~~l~~~~~~ 766 (1073)
+|+||+++ .++.+.|..||+.| ++.||+||||..+|+.+. + .+++.||+||||+||||+||.|+.
T Consensus 474 ~lvlv~l~~~~~~d~Y~~IK~~~-~~~gIpTQcV~~~Tl~~~~~k~~~~~l~~sia~NIalqIn~KLGG~pW~L~~---- 548 (771)
T 1u04_A 474 GLAFIAARNKLSSEKFEEIKRRL-FNLNVISQVVNEDTLKNKRDKYDRNRLDLFVRHNLLFQVLSKLGVKYYVLDY---- 548 (771)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH-HHTTEEEEEEEHHHHHHCEETTEEEEECHHHHHHHHHHHHHHTTCBCCEESC----
T ss_pred CEEEEEECCCCCCCHHHHHHHHH-HCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECC----
T ss_conf 78999975898866689999998-5489663998435006765443323132899999999999985983326068----
Q ss_pred CCCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEEECCCCHHHHHHHHHCCCCCCCCCCHHHHHH
Q ss_conf 77765899919999962289999999982779996306888653377999716862765521100368976654057999
Q 001466 767 RIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIK 846 (1073)
Q Consensus 767 ~~p~~~~~~tmiiG~DVsHp~~g~~~~pSiaavVaS~d~~~~~ky~~~~~~Q~~~~E~i~dl~~~~~~p~~~~~~~~mi~ 846 (1073)
| ..+|||||+||+|++++. .++|++|+|+|.| ....+|.+.+..|.++ |+|. + ..|++
T Consensus 549 --p---~~~tmiIGiDV~H~~~~~-~svs~~A~V~s~d-g~~~~~~s~~~~~~~~-E~i~-l-------------~~~l~ 606 (771)
T 1u04_A 549 --R---FNYDYIIGIDVAPMKRSE-GYIGGSAVMFDSQ-GYIRKIVPIKIGEQRG-ESVD-M-------------NEFFK 606 (771)
T ss_dssp --C---CSSSEEEEEEEEEECCTT-TCEEEEEEEEETT-SCEEEEEEEECCCCSS-SSCC-H-------------HHHHH
T ss_pred --C---CCCEEEEEEEEECCCCCC-CCEEEEEEEECCC-CCEEEEEEEEEECCCC-CEEC-H-------------HHHHH
T ss_conf --9---998799999987479899-7469999997799-9789998887303776-3773-9-------------99999
Q ss_pred HHHHHHHHH-CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 999999998-0999944999825779157999999999999999995099999989999993122232222489998877
Q 001466 847 ELLISFRRA-TGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHHDRNAV 925 (1073)
Q Consensus 847 e~L~~f~~~-~~~~P~~IIiyRDGVSEgQf~~Vl~~El~~Ik~a~~~~~~~y~P~it~Ivv~KRHhtRff~~~~~~~~~~ 925 (1073)
++|..|++. ++.+|++|||||||+ |+++|+++|++||.+. .|+||||+|+|||||||| .+
T Consensus 607 ~~L~~y~~~n~~~lP~RIIiyRDG~-------v~~~El~~i~ea~~~~----~p~itfIvV~Krh~tRfF-~~------- 667 (771)
T 1u04_A 607 EMVDKFKEFNIKLDNKKILLLRDGR-------ITNNEEEGLKYISEMF----DIEVVTMDVIKNHPVRAF-AN------- 667 (771)
T ss_dssp HHHHHHHHTTCCCTTCEEEEECSBC-------CCHHHHHHHHHHHHHH----TCEEEEEEEESCCCCCBS-SC-------
T ss_pred HHHHHHHHHHCCCCCCEEEEECCCC-------CCHHHHHHHHHHHHHC----CCCEEEEEEEECCCEEEE-CC-------
T ss_conf 9999999970799997799991888-------8789999999999855----998899999945751564-69-------
Q ss_pred CCCCCCCCCEEECCCCCCCCCCCEEECCCC--CCCCCCCCCEE--EEEECCCCCC----HHHHHHHHHHHHCCCCCCCC-
Q ss_conf 788888673042056667885626702357--85454468637--9994399889----88899999995205642367-
Q 001466 926 DRSGNILPGTVVDSKICHPTEFDFYLCSHA--GIQGTSRPAHY--HVLWDENKFT----ADGLQSLTNNLCYTYARCTR- 996 (1073)
Q Consensus 926 ~~~~N~~pGTVVD~~It~p~~~DFyL~Sh~--~~qGTarPthY--~VL~De~~~~----~d~lq~lT~~LCy~y~r~t~- 996 (1073)
.+|||||| . ||||+||. ++|||+||+|| +|++|+++++ +|+||.|||+|||+|+||++
T Consensus 668 -----~~pGTVV~-------~-DFyL~Sh~v~~~qGTprPthY~~~Vi~D~~~~~~~~~~D~lq~lty~Lchlyyn~~~~ 734 (771)
T 1u04_A 668 -----MKMYFNLG-------G-AIYLIPHKLKQAKGTPIPIKLAKKRIIKNGKVEKQSITRQDVLDIFILTRLNYGSISA 734 (771)
T ss_dssp -----SCEEEEET-------T-EEEEECSCCSSSCSCCCCEEEEEEEEEETTEEEECCCCHHHHHHHHHHHTCCTTCSSC
T ss_pred -----CCCEEEEE-------C-CEEEEECCCCCCCCCCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC
T ss_conf -----99804996-------8-8899834545888888878999788752788787778999999999865501457999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf 6446736787999999975302767
Q 001466 997 SVSIVPPAYYAHLAAFRARFYMEPE 1021 (1073)
Q Consensus 997 sVSip~P~yYA~l~a~Rar~~~~~~ 1021 (1073)
+||+|+||||||++|++++.++..+
T Consensus 735 svrvPAP~~YAhklA~lvgq~~~~~ 759 (771)
T 1u04_A 735 DMRLPAPVHYAHKFANAIRNEWKIK 759 (771)
T ss_dssp CCCSCHHHHHHHHHHHHHHTTCCCC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 9647812799999999997662457
No 6
>2yha_A Post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; HET: GOL; 1.85A {Neurospora crassa} PDB: 2xdy_A
Probab=1.00 E-value=1 Score=716.63 Aligned_cols=365 Identities=30% Similarity=0.486 Sum_probs=308.6
Q ss_pred CCCCEEEE-CCEECEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 12733530-72205269999468855689999999999998842954589992-06899990559999999999998650
Q 001466 613 MMNKKMVN-GGTVNHWICINFSRHVQDSIARGFCFELAQMCYISGMAFNPEPV-IPPISARPEHVEKVLKTRYHDAMTKL 690 (1073)
Q Consensus 613 ~~~~kf~~-~~~i~~W~~v~~~~~~~~~~~~~f~~~l~~~~~~~Gi~i~~~p~-~~~~~~~~~~~~~~l~~~~~~~~~~~ 690 (1073)
|++++|++ ++++++|++++|..+.+.+.++.|++.|.+.|+.+||.++.+.. +... . .++.+..+ .++++.+.
T Consensus 2 ~~~~~f~~p~~~l~~W~vv~~~~~~~~~~~~~f~~~l~~~~~~~G~~i~~p~~~~~~~-~-~~~~~~~~--~~~~~~~~- 76 (388)
T 2yha_A 2 AMAVKVARPCRKIEKWTYLELKGSKANEGVPQAMTAFAEFLNRTGIPINPRFSPGMSM-S-VPGSEKEF--FAKVKELM- 76 (388)
T ss_dssp ---CCCSBCCSCBCSEEEEEEECSSCCCCHHHHHHHHHHHHHHTTCCBCSCCCCCEEE-E-CCSSHHHH--HHHHHHHH-
T ss_pred CCCCEECCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEECCCCCCCEEC-C-CCCHHHHH--HHHHHHCC-
T ss_conf 9888851699727789999902777879999999999999987697747998754103-7-78638785--89875045-
Q ss_pred CCCCCCEEEEEEEECCCCCCHHHHHHHHHCCCCCEEEEEEECCCCCCCHH--HHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 69998509999950899840445557621134710133310210234366--8999999998513962332321101477
Q 001466 691 GQGKELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQ--YMANVALKINVKVGGRNTVLVDAISRRI 768 (1073)
Q Consensus 691 ~~~~~~~lvlvilp~~~~~~Y~~iK~~~d~~~GI~TQci~~~~~~k~~~q--~~~Ni~lKiN~KlGG~N~~l~~~~~~~~ 768 (1073)
.++||||||||+++.++|..||++||+++||+||||+.+++.|.++| |++||+||||+||||+||.|++. +
T Consensus 77 ---~~~~lvl~ilp~~~~~~Y~~iK~~~~~~~GI~TQcv~~~~~~k~~~q~s~~~NI~lKiN~KlGG~n~~l~~~----~ 149 (388)
T 2yha_A 77 ---SSHQFVVVLLPRKDVAIYNMVKRAADITFGVHTVCCVAEKFLSTKGQLGYFANVGLKVNLKFGGTNHNIKTP----I 149 (388)
T ss_dssp ---HTCSEEEEEESSSCHHHHHHHHHHHHTTTCCEEEEEEHHHHHCSTTHHHHHHHHHHHHHHHTTCBCCCCCSC----C
T ss_pred ---CCCEEEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEHHHHCCCCCHHHHHHHHHHHHHHHHCCCCEECCCC----C
T ss_conf ---898299999789983489999998710579750898345605767489999999999999718933122566----5
Q ss_pred CCCCCCCEEEEEEEECCCC---CC--CCCCCCEEEEEEEECCCCCCCEEEEEEECC-CCHHHHHHHHHCCCCCCCCCCHH
Q ss_conf 7658999199999622899---99--999982779996306888653377999716-86276552110036897665405
Q 001466 769 PLVSDRPTIIFGADVTHPH---PG--EDSSPSIAAVVASQDWPEVTKYAGLVCAQA-HRQELIQDLFKTWQDPVRGAVSG 842 (1073)
Q Consensus 769 p~~~~~~tmiiG~DVsHp~---~g--~~~~pSiaavVaS~d~~~~~ky~~~~~~Q~-~~~E~i~dl~~~~~~p~~~~~~~ 842 (1073)
|++.+.+|||||+||+||+ || ....|||||||||+| .++++|.+.+++|. +++|+|++| +
T Consensus 150 ~~~~~~~tmiiG~DV~H~~~~~~g~~~~~~pSiaavVaS~d-~~~~~y~~~~~~Q~~~~~E~i~~l-------------~ 215 (388)
T 2yha_A 150 PLLAKGKTMVVGYDVTHPTNLAAGQSPASAPSIVGLVSTID-QHLGQWPAMVWNNPHGQESMTEQF-------------T 215 (388)
T ss_dssp HHHHTSCEEEEEEEEECSCCCSSSSCCTTSCEEEEEEECCS-TTCCCCCEEEEEETTTHHHHHHHH-------------H
T ss_pred CCCCCCCEEEEEEEEECCCCCCCCCCCCCCCEEEEEEEECC-CCCCEEEEEEEECCCCCCCHHHHH-------------H
T ss_conf 54577877999877751565677776789987999877759-997779789998688862579999-------------9
Q ss_pred HHHHHHHHHHHH---HCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCEEEEEEEECCCCCCCCCC
Q ss_conf 799999999999---8099994499982577915799999999999999999509999-998999999312223222248
Q 001466 843 GMIKELLISFRR---ATGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNY-QPPVTFVVVQKRHHTRLFANN 918 (1073)
Q Consensus 843 ~mi~e~L~~f~~---~~~~~P~~IIiyRDGVSEgQf~~Vl~~El~~Ik~a~~~~~~~y-~P~it~Ivv~KRHhtRff~~~ 918 (1073)
+|++++|+.|++ +++.+|++|||||||||||||.+|+++|+++|++||.+++.+| .|+||||||+||
T Consensus 216 ~~~~~~L~~~~~~~~~~~~~P~rIiiyRDGVseGQf~~V~~~El~~i~~a~~~~~~~~~~P~it~Ivv~Kr--------- 286 (388)
T 2yha_A 216 DKFKTRLELWRSNPANNRSLPENILIFRDGVSEGQFQMVIKDELPLVRAACKLVYPAGKLPRITLIVSVKG--------- 286 (388)
T ss_dssp HHHHHHHHHHHHSGGGTTCCCSEEEEEEESCCGGGHHHHHHHTHHHHHHHHHHHSCTTCCCEEEEEEEC-----------
T ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCC---------
T ss_conf 99999999998756543789752899946867257999999999999999998514467986799996466---------
Q ss_pred CCCCCCCCCCCCCCCCEEECCCCCCCCCCCEEECCCCCCCCCCCCCEEEEEECCC------CCCHHHHHHHHHHHHCCCC
Q ss_conf 9998877788888673042056667885626702357854544686379994399------8898889999999520564
Q 001466 919 HHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDEN------KFTADGLQSLTNNLCYTYA 992 (1073)
Q Consensus 919 ~~~~~~~~~~~N~~pGTVVD~~It~p~~~DFyL~Sh~~~qGTarPthY~VL~De~------~~~~d~lq~lT~~LCy~y~ 992 (1073)
+|||||+||+||+ ++++|+||+|||+|||+|+
T Consensus 287 ------------------------------------------arPthY~Vl~De~f~~~~~~~~~d~lq~lty~Lc~~y~ 324 (388)
T 2yha_A 287 ------------------------------------------SGSAHYTVLVDEIFRADYGNKAADTLEQLTHDMCYLFG 324 (388)
T ss_dssp ----------------------------------------------CEEEEEESSHHHHHGGGHHHHHHHHHHHHHHC--
T ss_pred ------------------------------------------CCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf ------------------------------------------68826999827864334579999999999999977753
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 23676446736787999999975302767689--9987557778889888877766789998877899900111023680
Q 001466 993 RCTRSVSIVPPAYYAHLAAFRARFYMEPETSD--SGSMTSGTIGRGGMGGGVGARSTRGPGVGAAVRPLPALKENVKRVM 1070 (1073)
Q Consensus 993 r~t~sVSip~P~yYA~l~a~Rar~~~~~~~~~--~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~M 1070 (1073)
|||++||||+|+||||++|+|||.|+.+..++ ++|+.++++ ..+...++++|++|+++|
T Consensus 325 r~t~sVsipaP~yYAh~~a~R~r~~l~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~l~~~m 385 (388)
T 2yha_A 325 RATKAVSICPPAYYADLVCDRARIHQKELFDALDENDSVKTDD-------------------FARWGNSGAVHPNLRNSM 385 (388)
T ss_dssp --------CHHHHHHHHHHHHHHHHCHHHHHHHTTCSCCCHHH-------------------HHHHHHHTCCCGGGTTSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC-------------------CCCCCCCCCCCHHHCCCC
T ss_conf 3258877575899999999999998554126777666667776-------------------433223466597763784
Q ss_pred EEC
Q ss_conf 419
Q 001466 1071 FYC 1073 (1073)
Q Consensus 1071 ~y~ 1073 (1073)
|||
T Consensus 386 fyl 388 (388)
T 2yha_A 386 YYI 388 (388)
T ss_dssp TTC
T ss_pred EEC
T ss_conf 369
No 7
>3ho1_A Argonaute; argonaute, protein-DNA-RNA complex, nucleic acid binding Pro RNA complex; 2.60A {Thermus thermophilus} PDB: 3dlb_A* 3dlh_A* 3f73_A* 3hm9_A 3hvr_A 3hxm_A* 3hk2_A 3hjf_A
Probab=1.00 E-value=1 Score=697.44 Aligned_cols=641 Identities=17% Similarity=0.162 Sum_probs=468.6
Q ss_pred CCCEEEEEEEEEE-CC--CCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEECCCEEEECCCCCCCCCE
Q ss_conf 8336971147856-49--98526656897287653022299999999999850049842156166327841778999630
Q 001466 212 TRCIVKANHFFAE-LP--DKDLHQYDVTITPEVTSRGVNRAVMEQLVKLYRESHLGKRLPAYDGRKSLYTAGPLPFLSKE 288 (1073)
Q Consensus 212 ~~v~l~tN~f~v~-~~--~~~iy~YdV~i~pe~~~k~~~r~i~~~l~~~~~~~~~~~~~~~yDG~~~lys~~~L~~~~~~ 288 (1073)
.++.|.-|-|.++ +. +.+.|.|+|.+.|.+..... ..++..++. . +|.. +--....|.|..+ |. ...
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~--~~~~--~~~~~~~~~~~~~-~~-~~~ 74 (685)
T 3ho1_A 5 GKTEVFLNRFALRPLNPEELRPWRLEVVLDPPPGREEV-YPLLAQVAR---R--AGGV--TVRMGDGLASWSP-PE-VLV 74 (685)
T ss_dssp CCEEEEEEEEEEEECCTTTSSCEEEEEEEESCCCTTTH-HHHHHHHHH---H--TCSS--EEEETTEEEESSC-TT-TSC
T ss_pred CCEEEEEEEEECCCCCHHHCCEEEEEEECCCCCCCCHH-HHHHHHHHH---H--HCCE--EEEECCCEECCCC-CH-HHH
T ss_conf 52058975003454885348505899850799884147-789999998---7--3874--7863274000467-05-541
Q ss_pred EEEEEECCCCCCCCCCCCCEEEEEEEEEEEECHHHHHHHHCCCCCCCHHHHHHHH-----HHHHCCCCCCCCCCCCCCCC
Q ss_conf 8999815999999988784899999993540746489875168999937899999-----99980499887345565445
Q 001466 289 FRITLLDDDDGQGGQRREREFKVVIKLAARADLHHLGLFLQGRQADAPQEALQVL-----DIVLRELPTTRYCPVGRSFY 363 (1073)
Q Consensus 289 ~~v~~~~~~~~~~~~~~~~~~~v~i~~~~~~~l~~l~~~l~~~~~~~~~~~lq~L-----niilr~~~~~~~~~iGr~ff 363 (1073)
++=.+.. .+....|++.-.-.+.+|...- ..+++|..| +-.|+.. +++..-|.-.+
T Consensus 75 ~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 135 (685)
T 3ho1_A 75 LEGTLAR-------MGQTYAYRLYPKGRRPLDPKDP----------GERSVLSALARRLLQERLRRL--EGVWVEGLAVY 135 (685)
T ss_dssp CEEEEEC-------SSCEEEEEEEEEEECCCCTTSH----------HHHHHHHHHHHHHHHHHHHTC--SSSEEETTEEE
T ss_pred CCCHHCC-------CCCCCCEEEEECCCCCCCCCCH----------HHHHHHHHHHHHHHHHHHHHH--HCEEECCEEEE
T ss_conf 0220002-------3688663653056645788986----------788999999999999998765--33377647898
Q ss_pred CCCCCCCCCCCCCEEEEEEEEEEEECCC-CCEEEEEECCEEEEECCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 9999996458997599830012100147-805875405333474475199999998427999999996789999998159
Q 001466 364 SPDLGRRQPLGEGLESWRGFYQSIRPTQ-MGLSLNIDMSSTAFIEPLPVIDFVQQLLNRDVSSRPLSDADRVKIKKALRG 442 (1073)
Q Consensus 364 ~~~~~~~~~lg~Gle~~~G~~~Svr~~~-~~l~LniD~s~~~F~~~~~l~d~i~~~~~~~~~~~~~~~~~~~~i~~~Lkg 442 (1073)
-.. . .-|.|.|+.+|+...|.++. ++++|.||+.+. |+.+.++.+++.+.. . |.
T Consensus 136 ~~~---~-~~~~~~~~~~g~~~~v~~~~~~~~~l~vd~~~r-~~~~~~~~~~l~~~~------------------~-~~- 190 (685)
T 3ho1_A 136 RRE---H-ARGPGWRVLGGAVLDLWVSDSGAFLLEVDPAYR-ILCEMSLEAWLAQGH------------------P-LP- 190 (685)
T ss_dssp EEE---E-EEETTEEEEEEEEEEEEECSSSEEEEEEEEEEE-EEECSCHHHHHHHSC------------------C-CC-
T ss_pred EEC---C-CCCCCEEEECCEEEEEEECCCCCEEEEEEEHEE-ECCHHHHHHHHHHCC------------------C-CC-
T ss_conf 406---8-877743884366999998778867999740301-147644999998179------------------8-32-
Q ss_pred CEEEEEECCCCCCEEEEECCCCCCCCCEEEEECCCCCEEEHHHHHHHHCCCCCCCCCCCEEEECCC----CC-----CCC
Q ss_conf 599993259877339994357899875045415999274299999988197667899837992458----87-----732
Q 001466 443 VRVEVTHRGNMRRKYRISGLTSQTTGELTFPVDESGTLKSVVEYFYETYGFVIQHTQWPCLQVGNQ----QR-----PNY 513 (1073)
Q Consensus 443 l~V~~~~~~~~~r~~~I~gi~~~~a~~~~F~~~~~g~~itV~~Yf~~~Y~i~L~~p~lP~v~~g~~----~~-----~~y 513 (1073)
..|.++|+ .++|+|.+|+. ..++..|. + + .+|.+||+++||.+ +.-++|.|+...+ .+ .+|
T Consensus 191 ~~v~~~y~---~~~~~~~~~~~-~~p~~~~l-~--~-~~s~~~y~~~k~~~--~~~~~~~vv~~~~~~~~~~~i~~~~~~ 260 (685)
T 3ho1_A 191 KRVRNAYD---RRTWELLRLGE-EDPKELPL-P--G-GLSLLDYHASKGRL--QGREGGRVAWVADPKDPRKPIPHLTGL 260 (685)
T ss_dssp SEEEESSS---CCEECCCEEEC-CCTTCC----------CSTTTTTTTSTT--TTSCCCSEEEECSCC---CCEEEETTS
T ss_pred HHHHHHCC---CCEEEEEECCC-CCCHHEEC-C--C-CCCHHHHHHHCCCC--CCCCCCEEEEEECCCCCCCCCEEEEEE
T ss_conf 77764316---62489863366-89332345-7--8-86599997542653--346786599995544578733244256
Q ss_pred CCCCCEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCEEEEEEECCCCCE
Q ss_conf 24542674068433356999999999998239926789999999983259998212322638726522876378189943
Q 001466 514 LPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPHERERDIMQTVHHNAYHEDPYAREFGIKISEKLASVEARILPAPWL 593 (1073)
Q Consensus 514 lP~Elc~i~~gQ~~~~kl~~~q~~~mik~a~~~P~~R~~~I~~~~~~~~~~~~~~l~~fGi~i~~~~~~v~gRvL~~P~i 593 (1073)
|.|||| .++ |++.+.. .++...|.+|++.+.++++. +++.|||+ +++|++|+|||||||+|
T Consensus 261 l~p~l~--m~~------l~~~~~~---~~trlsP~~R~~~l~~~~~~-------i~~~~Gl~-~~~~i~v~gRvLppp~I 321 (685)
T 3ho1_A 261 LVPVLT--LED------LHEEEGS---LALSLPWEERRRRTREIASW-------IGRRLGLG-TPEAVRAQAYRLSIPKL 321 (685)
T ss_dssp EEEECC--TTT------TSSCSSC---CCCCCCHHHHHHHHHHHHHH-------HHHTTCSC-CCEEEEEEEEECCCCCE
T ss_pred ECHHHH--HHH------HHHHHHH---CCCCCCHHHHHHHHHHHHHH-------HHHHCCCC-CCCCCEEEEEECCHHHH
T ss_conf 322767--877------7666640---62567989999999999999-------88853999-89711687788388995
Q ss_pred EECCCCCCCCCCCCCCCEECCCCEEEECCEECEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHH
Q ss_conf 30589984335996750001273353072205269999468855689999999999998842954589992068999905
Q 001466 594 KYHDTGKEKDCLPQVGQWNMMNKKMVNGGTVNHWICINFSRHVQDSIARGFCFELAQMCYISGMAFNPEPVIPPISARPE 673 (1073)
Q Consensus 594 ~y~~~~~~~~~~p~~G~Wn~~~~kf~~~~~i~~W~~v~~~~~~~~~~~~~f~~~l~~~~~~~Gi~i~~~p~~~~~~~~~~ 673 (1073)
+++. . + ...|++.+.+|+.++.+ .|+++++... ...+..|++.|.+.|+.+||.|+. |.... .++
T Consensus 322 -~g~~-~---~---~~~~d~~~~~~~~~~~~-~~ail~l~~~--~~~~~~f~~~L~~va~~~G~~i~~-~~~~~---~~~ 386 (685)
T 3ho1_A 322 -MGRR-A---V---SKPADALRVGFYRAQET-ALALLRLDGA--QGWPEFLRRALLRAFGASGASLRL-HTLHA---HPS 386 (685)
T ss_dssp -ESSS-B---C---SSGGGHHHHCCSSCCCE-EEEEEECSSC--CSCCHHHHHHHHHHHHSSSSCEEE-EECCC---CGG
T ss_pred -CCCC-C---C---CCCHHHCCCCCEECCCC-EEEEEECCCC--HHHHHHHHHHHHHHHHHCCCEECC-CEEEC---CCC
T ss_conf -5899-7---5---78621114753113673-5999962672--678999999999988767937635-51104---777
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 59999999999998650699985099999508998404455576211347101333102102343668999999998513
Q 001466 674 HVEKVLKTRYHDAMTKLGQGKELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYMANVALKINVKV 753 (1073)
Q Consensus 674 ~~~~~l~~~~~~~~~~~~~~~~~~lvlvilp~~~~~~Y~~iK~~~d~~~GI~TQci~~~~~~k~~~q~~~Ni~lKiN~Kl 753 (1073)
+.. .+...+++..+ .++||||||+|+++.+.|..||++| .+.||+||||. +++.+...+++.||+||||+||
T Consensus 387 d~~-~~~~~l~~~~~-----~~~qlvvvIlp~~~~~~y~~IKk~~-~~~GIpTQcV~-~tl~k~~~~ia~NIaLkINaKL 458 (685)
T 3ho1_A 387 QGL-AFREALRKAKE-----EGVQAVLVLTPPMAWEDRNRLKALL-LREGLPSQILN-VPLREEERHRWENALLGLLAKA 458 (685)
T ss_dssp GTH-HHHHHHHHHHH-----TTCCEEEEEESCCCHHHHHHHHHHH-HHTTCCEEEEE-SSCCTTCHHHHHHHHHHHHHHH
T ss_pred CHH-HHHHHHHHHHH-----CCCCEEEEEECCCCCCHHHHHHHHH-HCCCCCCEEEE-CCCCCCCHHHHHHHHHHHHHHH
T ss_conf 369-99999998642-----3998899997799954789999998-63997638996-1225640719999999998873
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEEEEECC-CCCCCEEEEEEECCCCHHHHHHHHHCC
Q ss_conf 9623323211014777658999199999622899999999827799963068-886533779997168627655211003
Q 001466 754 GGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDW-PEVTKYAGLVCAQAHRQELIQDLFKTW 832 (1073)
Q Consensus 754 GG~N~~l~~~~~~~~p~~~~~~tmiiG~DVsHp~~g~~~~pSiaavVaS~d~-~~~~ky~~~~~~Q~~~~E~i~dl~~~~ 832 (1073)
||+||.|+. | ..+|||||+||+|++. .++++++++++- ....+| +.+..|.+.++.++++
T Consensus 459 GG~pW~L~~------P---~~~tmiIGiDVsH~~~-----~~~~~~aav~~~dg~~~~~-~~~~~Q~~e~l~~~~L---- 519 (685)
T 3ho1_A 459 GLQVVALSG------A---YPAELAVGFDAGGRES-----FRFGGAACAVGGDGGHLLW-TLPEAQAGERIPQEVV---- 519 (685)
T ss_dssp TCCCCEECS------C---CSCSEEEEEEEEETTE-----EEEEEEEEEECC--CCCEE-ECCCCCCSCCCHHHHH----
T ss_pred CCEEEEECC------C---CCCEEEEEEEEECCCC-----CCCCEEEEEEECCCCEEEE-EEEECCCCCEECHHHH----
T ss_conf 983578568------9---9986999999973898-----9612399999788887776-7887267858649999----
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCC-CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCC
Q ss_conf 68976654057999999999998099994499982577-91579999999999999999950999999899999931222
Q 001466 833 QDPVRGAVSGGMIKELLISFRRATGQKPQRIIFYRDGV-SEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHH 911 (1073)
Q Consensus 833 ~~p~~~~~~~~mi~e~L~~f~~~~~~~P~~IIiyRDGV-SEgQf~~Vl~~El~~Ik~a~~~~~~~y~P~it~Ivv~KRHh 911 (1073)
.+|+.++|..|++.++.+|+||||||||| ||+||. +|++||.++ .+++|||||+||||
T Consensus 520 ---------~~~l~eaL~~Y~k~ng~lP~RIIIyRDGV~se~E~~--------~I~eAl~~~----~~~~t~IvVqKRh~ 578 (685)
T 3ho1_A 520 ---------WDLLEETLWAFRRKAGRLPSRVLLLRNGRVPQDEFA--------LALEALARE----GIAYDLVSVRKSGG 578 (685)
T ss_dssp ---------HHHHHHHHHHHHHHHSSCCSEEEEEECSSSCSGGGH--------HHHHHHHHT----TCEEEEEEEESSCC
T ss_pred ---------HHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHH--------HHHHHHHHC----CCCEEEEEEEECCC
T ss_conf ---------999999999999983899848999958989989999--------999999861----99879999991687
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCEEECCC--CCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 3222248999887778888867304205666788562670235--78545446863799943998898889999999520
Q 001466 912 TRLFANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSH--AGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCY 989 (1073)
Q Consensus 912 tRff~~~~~~~~~~~~~~N~~pGTVVD~~It~p~~~DFyL~Sh--~~~qGTarPthY~VL~De~~~~~d~lq~lT~~LCy 989 (1073)
||||+.+ .++.+||+|+ .++||||++| .++|||+||+||+ +|++++++|+||+|||+|||
T Consensus 579 tRfF~~n----------~pp~~Gt~v~------~e~d~flL~s~gsv~qGT~rPthy~--~D~~~~s~D~LQ~ltY~Lch 640 (685)
T 3ho1_A 579 GRVYPVQ----------GRLADGLYVP------LEDKTFLLLTVHRDFRGTPRPLKLV--HEAGDTPLEALAHQIFHLTR 640 (685)
T ss_dssp CCEEESS----------SCCCSSEEEE------CSTTEEEEECCCCCSSSCCCCEEEE--EEEECSCHHHHHHHHHHGGG
T ss_pred CEEECCC----------CCCCCEEEEE------CCCCEEEEEECCCCCCCCCCEEEEE--ECCCCCCHHHHHHHHHHHHH
T ss_conf 1374689----------8998759980------7897899996688876678619999--89899899999999999777
Q ss_pred CCCCCC-CCCCCCCHHHHHHHHH-HHHHH
Q ss_conf 564236-7644673678799999-99753
Q 001466 990 TYARCT-RSVSIVPPAYYAHLAA-FRARF 1016 (1073)
Q Consensus 990 ~y~r~t-~sVSip~P~yYA~l~a-~Rar~ 1016 (1073)
+|+||| ++||+|+||||||++| .|||.
T Consensus 641 my~nst~~svsvPAP~~YAhklAk~~~r~ 669 (685)
T 3ho1_A 641 LYPASGFAFPRLPAPLHLADRLVKEVGRL 669 (685)
T ss_dssp CCSSCSSSCCSSCHHHHHHHHHHHHHHHT
T ss_pred HHCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 51168999998675789999999999873
No 8
>2w42_A PIWI, putative uncharacterized protein; RNAI, RISC, argonaute, PIWI domain, protein/DNA complex; 1.90A {Archaeoglobus fulgidus} PDB: 1ytu_A 2bgg_A 1w9h_A
Probab=1.00 E-value=1 Score=473.58 Aligned_cols=365 Identities=14% Similarity=0.058 Sum_probs=260.6
Q ss_pred ECCCCCEEECCCCCCC-----CCCCCCCCEECCCCEEEECCEE--CEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 8189943305899843-----3599675000127335307220--52699994688556899999999999988429545
Q 001466 587 ILPAPWLKYHDTGKEK-----DCLPQVGQWNMMNKKMVNGGTV--NHWICINFSRHVQDSIARGFCFELAQMCYISGMAF 659 (1073)
Q Consensus 587 vL~~P~i~y~~~~~~~-----~~~p~~G~Wn~~~~kf~~~~~i--~~W~~v~~~~~~~~~~~~~f~~~l~~~~~~~Gi~i 659 (1073)
-|..|.+.|+.++... ...|..| +++...+....+ .+|++|+-.+.. +.++.|.+.+.... ..++.+
T Consensus 5 ~~~ep~~~~~~~~~~~~~~~~~~~~~~g---l~~~gpy~~~~~~~~~w~vI~~~~~~--~~l~~l~~~~~~~~-g~~f~~ 78 (427)
T 2w42_A 5 KIVENGLTYRIGNGASVPISNTGELIKG---LRNYGPYEVPSLKYNQIALIHNNQFS--SLINQLKSQISSKI-DEVWHI 78 (427)
T ss_dssp ------CEEECGGGCEEESSCHHHHHHH---HHHHCCSBCCCCSSSEEEEEESCTTC--HHHHHHHHHHHHHH-HHTTCC
T ss_pred CCCCCCCEEECCCCCCCCCCCCCCHHHH---HHHCCCCCCCCCCCCEEEEEECCCCH--HHHHHHHHHHHHCC-CCCEEE
T ss_conf 4478753441247973444456787899---98669974677889889999773308--99999987533128-984053
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEE--------ECCCCCCHHHHHHHHHCCCCCEEEEEEE
Q ss_conf 89992068999905599999999999986506999850999995--------0899840445557621134710133310
Q 001466 660 NPEPVIPPISARPEHVEKVLKTRYHDAMTKLGQGKELDLLIVIL--------PDNNGSLYGDLKRICETDLGLVSQCCLT 731 (1073)
Q Consensus 660 ~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~lvlvil--------p~~~~~~Y~~iK~~~d~~~GI~TQci~~ 731 (1073)
.. +. .+.+.+.+.+++... .+++++|||+ |+++...| .+|+ ++++.||+||||..
T Consensus 79 ~~-~~-----~~~~~y~~~i~~~l~---------~~~~lvlvilp~~~~~~~~~~~~~~y-~~K~-~~~~~gvptQ~I~~ 141 (427)
T 2w42_A 79 HN-IN-----ISEFIYDSPHFDSIK---------SQVDNAIDTGVDGIMLVLPEYNTPLY-YKLK-SYLINSIPSQFMRY 141 (427)
T ss_dssp CS-CE-----EEEEECSSSSHHHHH---------HHHHHHHHHCCSEEEEEESSCCHHHH-HHHH-HHHHTTSCEEEEEG
T ss_pred CC-CC-----CCHHHHHHHHHHHHC---------CCCCEEEEEEECCCCCCCCCCCCCHH-HHHH-HHHCCCCCCEEEEH
T ss_conf 57-76-----780789999999743---------79979999997601045898775059-9999-98679967589873
Q ss_pred CCCCCCCHH-HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEEEEECCCCCCC
Q ss_conf 210234366-8999999998513962332321101477765899919999962289999999982779996306888653
Q 001466 732 KHVFKMSKQ-YMANVALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTK 810 (1073)
Q Consensus 732 ~~~~k~~~q-~~~Ni~lKiN~KlGG~N~~l~~~~~~~~p~~~~~~tmiiG~DVsHp~~g~~~~pSiaavVaS~d~~~~~k 810 (1073)
+|+.+.+.+ ++.||++|||+||||+||.|+.. .|. .+|||||+||+|++++ +++|++...| .+...
T Consensus 142 ~tl~~~~~~~~~~nIalqi~~KlGG~pW~l~~~----~~~---~~~miiGidv~h~~~~-----~v~g~a~v~~-~~g~~ 208 (427)
T 2w42_A 142 DILSNRNLTFYVDNLLVQFVSKLGGKPWILNVD----PEK---GSDIIIGTGATRIDNV-----NLFCFAMVFK-KDGTM 208 (427)
T ss_dssp GGCCTTTHHHHHHHHHHHHHHHTTCBCCEECCC----TTS---SCSEEEEEEEEESSSS-----EEEEEEEEEC-TTSCE
T ss_pred HHCCCCCCHHHHHHHHHHHHHHHCCCCEECCCC----CCC---CCEEEEEEEEEECCCC-----CEEEEEEEEC-CCCCE
T ss_conf 354556505699999999978738966064567----898---9869997899876999-----5799999983-89978
Q ss_pred EEEEEEECCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH-HCCCCCC--EEEEEECCCCHHHHHHHHHHHHHHHH
Q ss_conf 37799971686276552110036897665405799999999999-8099994--49998257791579999999999999
Q 001466 811 YAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISFRR-ATGQKPQ--RIIFYRDGVSEGQFYQVLLYELDAIR 887 (1073)
Q Consensus 811 y~~~~~~Q~~~~E~i~dl~~~~~~p~~~~~~~~mi~e~L~~f~~-~~~~~P~--~IIiyRDGVSEgQf~~Vl~~El~~Ik 887 (1073)
+...+..|.+++|++++| ..+++++|+.|++ .++.+|+ ||||| |||.+|+++|+++|+
T Consensus 209 ~~~~~~~~~~~~E~~~~l-------------~~~l~~aL~~y~~~~~~~~P~~~rIii~------gq~~~v~~~Ei~~i~ 269 (427)
T 2w42_A 209 LWNEISPIVTSSEYLTYL-------------KSTIKKVVYGFKKSNPDWDVEKLTLHVS------GKRPKMKDGETKILK 269 (427)
T ss_dssp EEEEECCCEEGGGHHHHH-------------HHHHHHHHHHHHHHCTTCCCSEEEEEEE------SSCCSCHHHHHHHHH
T ss_pred EEEEEEECCCHHHHHHHH-------------HHHHHHHHHHHHHHHCCCCCCCEEEEEE------EECCCCCHHHHHHHH
T ss_conf 999888427706799999-------------9999999999998742789982599999------214111699999999
Q ss_pred HHHHHHCC----CCCCCEEEEEEEECCC-CCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCEEECCCCCCCC---
Q ss_conf 99995099----9999899999931222-322224899988777888886730420566678856267023578545---
Q 001466 888 KACASLEP----NYQPPVTFVVVQKRHH-TRLFANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQG--- 959 (1073)
Q Consensus 888 ~a~~~~~~----~y~P~it~Ivv~KRHh-tRff~~~~~~~~~~~~~~N~~pGTVVD~~It~p~~~DFyL~Sh~~~qG--- 959 (1073)
+||.++.. +|+|+||||+|+|||| +|||..+ ..+||+||||||.+ ++|||++|.+.|+
T Consensus 270 ~a~~~~~~~~~~~~~~~l~~IvV~Kr~~~~r~f~~~--------~~~nP~~GTvVd~~------~~~~l~~~~g~q~~~~ 335 (427)
T 2w42_A 270 ETVEELKKQEMVSRDVKYAILHLNETHPFWVMGDPN--------NRFHPYEGTKVKLS------SKRYLLTLLQPYLKRN 335 (427)
T ss_dssp HHHHHHHHTTSSCTTCEEEEEEEEECCCEEEEC----------------CCSEEEESS------SSEEEEEEEC------
T ss_pred HHHHHHCCCCCCCCCCCEEEEEEECCCCCEEEECCC--------CCCCCCCCEEEECC------CCEEEEEEEEEECCCC
T ss_conf 999871544345788877999998166654665478--------88998996499758------9808999974523656
Q ss_pred ---CC---CCCEEEEEEC----CCCC-CHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf ---44---6863799943----9988-988899999995205642367644673678799999997530276
Q 001466 960 ---TS---RPAHYHVLWD----ENKF-TADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEP 1020 (1073)
Q Consensus 960 ---Ta---rPthY~VL~D----e~~~-~~d~lq~lT~~LCy~y~r~t~sVSip~P~yYA~l~a~Rar~~~~~ 1020 (1073)
+. +||||+|++| |+.+ ++|+||++||+|||+|+|||++||+|+||||||++|+++.....-
T Consensus 336 ~~~~~~~~~Pt~y~vi~d~~~~~~~~~~~d~lq~lty~L~~~nw~~t~~v~vPap~~YAhklA~l~~~~~~~ 407 (427)
T 2w42_A 336 GLEMVTPIKPLSVEIVSDNWTSEEYYHNVHEILDEIYYLSKMNWRGFRSRNLPVTVNYPKLVAGIIANVNRY 407 (427)
T ss_dssp ---CEEEEEEEEEEEEEECCCTTTHHHHHHHHHHHHHHHHTCCTTSSSCCSSCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 656535889879999966876844598999999999985476568888898376507699999998656425
No 9
>4g0x_A Protein argonaute 1; MID domain, small RNA 5' nucleotide recognition, gene regula; 1.35A {Arabidopsis thaliana} PDB: 4g0q_A* 4g0p_A 4g0y_A* 4g0z_A* 3vna_A 3vnb_A
Probab=1.00 E-value=1 Score=226.56 Aligned_cols=146 Identities=88% Similarity=1.424 Sum_probs=129.8
Q ss_pred CCEEEECCEECEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 73353072205269999468855689999999999998842954589992068999905599999999999986506999
Q 001466 615 NKKMVNGGTVNHWICINFSRHVQDSIARGFCFELAQMCYISGMAFNPEPVIPPISARPEHVEKVLKTRYHDAMTKLGQGK 694 (1073)
Q Consensus 615 ~~kf~~~~~i~~W~~v~~~~~~~~~~~~~f~~~l~~~~~~~Gi~i~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 694 (1073)
+++|++|+++++|++++|++..+++.++.|++.|.+.|+.+||.++++|.+.....+++++++.|+.+++++.+++....
T Consensus 2 ~kkf~~~~~l~~Wavv~~~~~~~~~~~~~F~~~L~~~~~~~Gm~i~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 81 (147)
T 4g0x_A 2 NKKMINGGTVNNWICINFSRQVQDNLARTFCQELAQMCYVSGMAFNPEPVLPPVSARPEQVEKVLKTRYHDATSKLSQGK 81 (147)
T ss_dssp CCCEEECCEECSEEEEECCTTCCHHHHHHHHHHHHHHHHHTTCEECSSCSSCCEECCGGGHHHHHHHHHHHHHHTSSTTC
T ss_pred CCEEECCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 88770277467489998468776799999999999999984997799986521478817799999999999986404489
Q ss_pred CCEEEEEEEECCCCCCHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 850999995089984044555762113471013331021023436689999999985139623323
Q 001466 695 ELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYMANVALKINVKVGGRNTVL 760 (1073)
Q Consensus 695 ~~~lvlvilp~~~~~~Y~~iK~~~d~~~GI~TQci~~~~~~k~~~q~~~Ni~lKiN~KlGG~N~~l 760 (1073)
++||||||||+++.++|+.||++||+++||+||||+.+++.|.++||++||+||||+||||+||.|
T Consensus 82 ~~~lv~~il~~~~~~~Y~~iK~~~~~~~gi~tqcv~~~~~~k~~~q~~~nv~lKiN~KlGG~N~~l 147 (147)
T 4g0x_A 82 EIDLLIVILPDNNGSLYGDLKRICETELGIVSQCCLTKHVFKMSKQYMANVALKINVKVGGRNTVL 147 (147)
T ss_dssp CCCEEEEEECSSCTTHHHHHHHHCCCCCCCCEEEEEHHHHHHCCHHHHHHHHHHHHHHTTCEECCC
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEECHHHHCCCCHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 971999996899940789999987327891658854455167778899999999977657545639
No 10
>1vyn_A Argonaute2; nucleic acid binding, RNA interference; NMR {Drosophila melanogaster} SCOP: b.34.14.1
Probab=1.00 E-value=1 Score=222.39 Aligned_cols=138 Identities=25% Similarity=0.500 Sum_probs=121.1
Q ss_pred ECCCCHHHHHHHHHCC-CCCCCCCCHHHHHHHHHHHCCCEEEEEECC---CCCCEEEEECCCCCCCCCEEEEECCCCCEE
Q ss_conf 4475199999998427-999999996789999998159599993259---877339994357899875045415999274
Q 001466 406 IEPLPVIDFVQQLLNR-DVSSRPLSDADRVKIKKALRGVRVEVTHRG---NMRRKYRISGLTSQTTGELTFPVDESGTLK 481 (1073)
Q Consensus 406 ~~~~~l~d~i~~~~~~-~~~~~~~~~~~~~~i~~~Lkgl~V~~~~~~---~~~r~~~I~gi~~~~a~~~~F~~~~~g~~i 481 (1073)
++++||+||++++++. ........+.++.+++++|+|++|.++|.+ ..+|+|+|.+|++.++++.+|+++ |.++
T Consensus 2 ~~~~~vidfl~~~~~~~~~~~~~~~~~~r~~~~k~LkGl~V~~~~~~~~~~~~r~yrI~~i~~~~a~~~~F~~~--g~~i 79 (143)
T 1vyn_A 2 AMAMPMIEYLERFSLKAKINNTTNLDYSRRFLEPFLRGINVVYTPPQSFQSAPRVYRVNGLSRAPASSETFEHD--GKKV 79 (143)
T ss_dssp --CEEHHHHHHHHTTSSCCSSSSCHHHHHHHSHHHHTTEEEEECCCTTSCCCCEEEEEEEEEEEETTTCEEESS--SCEE
T ss_pred CCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEEEECCCCCCCCEEEECC--CCEE
T ss_conf 88634999999986216666557566899999997498399995687766787359981056899521289749--9779
Q ss_pred EHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 29999998819766789983799245887732245426740684333569999999999982399
Q 001466 482 SVVEYFYETYGFVIQHTQWPCLQVGNQQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQR 546 (1073)
Q Consensus 482 tV~~Yf~~~Y~i~L~~p~lP~v~~g~~~~~~ylP~Elc~i~~gQ~~~~kl~~~q~~~mik~a~~~ 546 (1073)
||+|||+++ |++|+||+||||++|++.+++|||||||.|++||+|+++|+++|+++||++||++
T Consensus 80 sv~~Yf~~~-~~~l~~p~lP~l~~g~~~k~~ylP~ElC~i~~gQ~~~~kl~~~q~~~mik~a~~~ 143 (143)
T 1vyn_A 80 TIASYFHSR-NYPLKFPQLHCLNVGSSIKSILLPIELCSIEEGQALNRKDGATQVANMIKYAATS 143 (143)
T ss_dssp EHHHHHHHT-TCCCSSTTSEEEEEECSSSEEEEEGGGEEECC-----------------------
T ss_pred EHHHHHHHC-CCCCCCCCCCEEEECCCCCCEEECCEEEECCCCCCCCCCCCHHHHHHHHHHHHCC
T ss_conf 899999872-9977899987587437889758511858805895224318989999999998359
Done!