BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001468
(1073 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CB6|A Chain A, Crystal Structure Of The S. Pombe Peptidase Homology
Domain Of Fact Complex Subunit Spt16 (Form B)
Length = 444
Score = 275 bits (703), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 164/456 (35%), Positives = 252/456 (55%), Gaps = 23/456 (5%)
Query: 20 AAANTYAINLDNFSKRLKMLYSHWT--EHNSDLWGDSNALAVATPPVSEDLRYLKSSALN 77
A Y I+ F KRL +L + W E L+ D +++ V + Y KS+AL+
Sbjct: 1 GAMAEYEIDEITFHKRLGILLTSWKNEEDGKTLFQDCDSILVTVGAHDDTNPYQKSTALH 60
Query: 78 VWLVGYEFPETIMVFLKKQIHFLCSQKKASLLEVIKKSAKEAVGIEVVIHVKGKTDDGSG 137
WL+GYEFP T+++ K +I L S KA++L + ++ A + ++ K ++
Sbjct: 61 TWLLGYEFPSTLILLEKHRITILTSVNKANMLTKLAETKGAAADVNILKRTK-DAEENKK 119
Query: 138 LMDKIFGAVNDQSKSGGQNSPVVGHISREAPEGKLLETWNEKLK--KANFALSDVSNGFS 195
L +KI + +K VG ++ +GK + W+ + K+ F L D S G +
Sbjct: 120 LFEKIIEYIRATNKK-------VGVFPKDKTQGKFINEWDSIFEPVKSEFNLVDASLGLA 172
Query: 196 DLFAIKDDTELTNIKKAAFLSSSVMKQFVVPKLEKVIDEEKKVSHSSLMDETEKAILEPA 255
AIKD+ EL NIK A+ +S +VM ++ V +L ID+ KK++HS D+ E I A
Sbjct: 173 KCLAIKDEQELANIKGASRVSVAVMSKYFVDELSTYIDQGKKITHSKFSDQMESLIDNEA 232
Query: 256 RIKVK-LKAENVDI-----CYPPIFQSGGEFDLKPSASSNDNYLYYDSTSVIICAVGSRY 309
+ K LK ++D+ CY PI QSGG +DLKPSA ++D L+ D V++C++G RY
Sbjct: 233 FFQTKSLKLGDIDLDQLEWCYTPIIQSGGSYDLKPSAITDDRNLHGD---VVLCSLGFRY 289
Query: 310 NSYCSNVARTFLIDANTVQSKAYEVLLKAHEAAISALKSGNKVSAAYKAASTVVEKDAPE 369
SYCSNV RT+L D ++ Q K Y L+ + + G + Y ++ P+
Sbjct: 290 KSYCSNVGRTYLFDPDSEQQKNYSFLVALQKKLFEYCRDGAVIGDIYTKILGLIRAKRPD 349
Query: 370 LAANLTRNAGTGIGLEFRESGLSLNAKNDRILKAGMVFNVSLGFQNLQTEN-KNPKTQKF 428
L N RN G GIG+EFRES L +NAKN R+L+AGM N+S+GF NL + KN +++++
Sbjct: 350 LEPNFVRNLGAGIGIEFRESSLLVNAKNPRVLQAGMTLNLSIGFGNLINPHPKNSQSKEY 409
Query: 429 SVLLADTVIVGEKVPDIVTSKSSKAVKDVAYSFNED 464
++LL DT+ + P IV + S KA D++Y F ED
Sbjct: 410 ALLLIDTIQITRSDP-IVFTDSPKAQGDISYFFGED 444
>pdb|3CB5|A Chain A, Crystal Structure Of The S. Pombe Peptidase Homology
Domain Of Fact Complex Subunit Spt16 (form A)
pdb|3CB5|B Chain B, Crystal Structure Of The S. Pombe Peptidase Homology
Domain Of Fact Complex Subunit Spt16 (form A)
Length = 444
Score = 268 bits (685), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 162/456 (35%), Positives = 249/456 (54%), Gaps = 23/456 (5%)
Query: 20 AAANTYAINLDNFSKRLKMLYSHWT--EHNSDLWGDSNALAVATPPVSEDLRYLKSSALN 77
A Y I+ F KRL +L + W E L+ D +++ V + Y KS+AL+
Sbjct: 1 GAXAEYEIDEITFHKRLGILLTSWKNEEDGKTLFQDCDSILVTVGAHDDTNPYQKSTALH 60
Query: 78 VWLVGYEFPETIMVFLKKQIHFLCSQKKASLLEVIKKSAKEAVGIEVVIHVKGKTDDGSG 137
WL+GYEFP T+++ K +I L S KA+ L + ++ A + ++ K ++
Sbjct: 61 TWLLGYEFPSTLILLEKHRITILTSVNKANXLTKLAETKGAAADVNILKRTK-DAEENKK 119
Query: 138 LMDKIFGAVNDQSKSGGQNSPVVGHISREAPEGKLLETWNEKLK--KANFALSDVSNGFS 195
L +KI + +K VG ++ +GK + W+ + K+ F L D S G +
Sbjct: 120 LFEKIIEYIRATNKK-------VGVFPKDKTQGKFINEWDSIFEPVKSEFNLVDASLGLA 172
Query: 196 DLFAIKDDTELTNIKKAAFLSSSVMKQFVVPKLEKVIDEEKKVSHSSLMDETEKAILEPA 255
AIKD+ EL NIK A+ +S +V ++ V +L ID+ KK++HS D+ E I A
Sbjct: 173 KCLAIKDEQELANIKGASRVSVAVXSKYFVDELSTYIDQGKKITHSKFSDQXESLIDNEA 232
Query: 256 RIKVK-LKAENVDI-----CYPPIFQSGGEFDLKPSASSNDNYLYYDSTSVIICAVGSRY 309
+ K LK ++D+ CY PI QSGG +DLKPSA ++D L+ D V++C++G RY
Sbjct: 233 FFQTKSLKLGDIDLDQLEWCYTPIIQSGGSYDLKPSAITDDRNLHGD---VVLCSLGFRY 289
Query: 310 NSYCSNVARTFLIDANTVQSKAYEVLLKAHEAAISALKSGNKVSAAYKAASTVVEKDAPE 369
SYCSNV RT+L D ++ Q K Y L+ + + G + Y ++ P+
Sbjct: 290 KSYCSNVGRTYLFDPDSEQQKNYSFLVALQKKLFEYCRDGAVIGDIYTKILGLIRAKRPD 349
Query: 370 LAANLTRNAGTGIGLEFRESGLSLNAKNDRILKAGMVFNVSLGFQNLQTEN-KNPKTQKF 428
L N RN G GIG+EFRES L +NAKN R+L+AG N+S+GF NL + KN +++++
Sbjct: 350 LEPNFVRNLGAGIGIEFRESSLLVNAKNPRVLQAGXTLNLSIGFGNLINPHPKNSQSKEY 409
Query: 429 SVLLADTVIVGEKVPDIVTSKSSKAVKDVAYSFNED 464
++LL DT+ + P IV + S KA D++Y F ED
Sbjct: 410 ALLLIDTIQITRSDP-IVFTDSPKAQGDISYFFGED 444
>pdb|4IOY|X Chain X, Structure Of The Spt16 Middle Domain Reveals Functional
Features Of The Histone Chaperone Fact
Length = 285
Score = 209 bits (531), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 115/280 (41%), Positives = 172/280 (61%), Gaps = 17/280 (6%)
Query: 682 KLFDLWIRPPFGGRGRKLTGSLEAHTNGFRY-STSRPDERVDVMYGNIKHAFFQPAEREM 740
+L +++RP +++ ++ H NG R+ S R D R+D+++ NIK+ FQ + E+
Sbjct: 13 RLDQIFVRP--NPDTKRVPSTVFIHENGIRFQSPLRTDSRIDILFSNIKNLIFQSCKGEL 70
Query: 741 ITLLHFHLHNHIMVGNKKTKDVQFYIEVMDVVQTLGGGKRSAYDPDEVEEEQRERARKNK 800
I ++H HL N I++G KK +DVQFY E D+ G R D DE+E+EQ ER ++
Sbjct: 71 IVVIHIHLKNPILMGKKKIQDVQFYREASDMSVDETGRFRRYGDEDELEQEQEERRKRAA 130
Query: 801 INMDFQNFVNRV----NDLWGQPQFKAFDLEFDQPLRELGFHGVPHKASAFIVPTSSCLV 856
++ +F+ F + + N L L + R+LGF GVP++++ F +PT+ CLV
Sbjct: 131 LDKEFKYFADAIAEASNGL----------LTVENTFRDLGFQGVPNRSAVFCMPTTDCLV 180
Query: 857 ELIETPFVVITLSEIEIVNLERVGLGQKNFDMTIVFKDFKRDVLRIDSIPSSSLDGIKEW 916
+LIE PF+VI L E+EI LERV G KNFDM V+KDF + V I+++P SLD +K+W
Sbjct: 181 QLIEPPFLVINLEEVEICILERVQFGLKNFDMVFVYKDFNKPVTHINTVPIESLDFLKQW 240
Query: 917 LDTTDLKYYESRLNLNWRPILKTITDDPEKFIEDGGWEFL 956
L D+ Y S +NLNW I+K++ DDP +F DGGW FL
Sbjct: 241 LTDMDIPYTVSTINLNWATIMKSLQDDPYQFFLDGGWNFL 280
>pdb|3BIP|A Chain A, Crystal Structure Of Yeast Spt16 N-Terminal Domain
pdb|3BIP|B Chain B, Crystal Structure Of Yeast Spt16 N-Terminal Domain
pdb|3BIQ|A Chain A, Crystal Structure Of Yeast Spt16 N-Terminal Domain
Length = 467
Score = 200 bits (509), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 142/475 (29%), Positives = 234/475 (49%), Gaps = 51/475 (10%)
Query: 27 INLDNFSKRLKMLYSHWTEHNSDLWGDSNALAVATPPVSEDLRYLKSSALNVWLVGYEFP 86
I+ D F KR+++LYS + E G N+L + + Y K++ L+ WL+ YEFP
Sbjct: 8 IDFDVFKKRIELLYSKYNEFE----GSPNSLLFVLGSSNAENPYQKTTILHNWLLSYEFP 63
Query: 87 ETIMVFLKKQIHFLCSQKKASLLEV---IKKSAKEAVGIEVVIHVKGKTDDGSGLMDKIF 143
T++ + ++ + S KA L+ + K + + +E+ + + L D +
Sbjct: 64 ATLIALVPGKVIIITSSAKAKHLQKAIDLFKDPESKITLELWQRNNKEPELNKKLFDDVI 123
Query: 144 GAVNDQSKSGGQNSPVVGHISREAPEGKLLETWN----EKLKKANFALSDVSNGFSDLFA 199
+N K+ VG +++ +GK + WN +K+ F + D+S G S ++
Sbjct: 124 ALINSAGKT-------VGIPEKDSYQGKFMTEWNPVWEAAVKENEFNVIDISLGLSKVWE 176
Query: 200 IKDDTELTNIKKAAFLS-----SSVMKQFVVPKLEKVIDEEKKVSHSSLMDETEKAILEP 254
+KD + + AFLS S + ++ + +DEE K++++ L D+ E I +
Sbjct: 177 VKD------VNEQAFLSVSSKGSDKFMDLLSNEMVRAVDEELKITNAKLSDKIENKIDDV 230
Query: 255 ARIK-------------VKLKAENVDICYPPIFQSGGEFDLKPSASSNDNYLYYDSTSVI 301
+K K + +D Y PI QSG +FDL+ SA S ++ LY I
Sbjct: 231 KFLKQLSPDLSALCPPNYKFNFDLLDWTYSPIIQSGKKFDLRVSARSTNDQLY--GNGCI 288
Query: 302 ICAVGSRYNSYCSNVARTFLIDANTVQSKAYEVLLKAH-EAAISALKSGNKVSAAYKAAS 360
+ + G RYN+YCSN+ RTFLID + + Y+ LL E + LK G Y++
Sbjct: 289 LASCGIRYNNYCSNITRTFLIDPSEEMANNYDFLLTLQKEIVTNILKPGRTPKEVYESVI 348
Query: 361 TVVEKDAPELAANLTRNAGTGIGLEFRESGLSLNAKND-RILKAGMVFNVSLGFQNLQTE 419
+EK PEL N T+N G+ IGLEFR+S LN KND R ++ G FN+S GF NL+
Sbjct: 349 EYIEKTKPELVPNFTKNIGSLIGLEFRDSNFILNVKNDYRKIQRGDCFNISFGFNNLKDS 408
Query: 420 NKNPKTQKFSVLLADTVIV--GEKVPDIVTSKSSKAVKDVAYSFNEDDEEEEQPK 472
+++ LADTV + E P + +KA +++ FN ++E+ + K
Sbjct: 409 Q---SANNYALQLADTVQIPLDETEPPRFLTNYTKAKSQISFYFNNEEEDNNKKK 460
>pdb|3BIT|A Chain A, Crystal Structure Of Yeast Spt16 N-Terminal Domain
pdb|3BIT|B Chain B, Crystal Structure Of Yeast Spt16 N-Terminal Domain
Length = 453
Score = 194 bits (494), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 140/468 (29%), Positives = 228/468 (48%), Gaps = 51/468 (10%)
Query: 27 INLDNFSKRLKMLYSHWTEHNSDLWGDSNALAVATPPVSEDLRYLKSSALNVWLVGYEFP 86
I+ D F KR+++LYS + E G N+L + + Y K++ L+ WL+ YEFP
Sbjct: 8 IDFDVFKKRIELLYSKYNEFE----GSPNSLLFVLGSSNAENPYQKTTILHNWLLSYEFP 63
Query: 87 ETIMVFLKKQIHFLCSQKKASLLEV---IKKSAKEAVGIEVVIHVKGKTDDGSGLMDKIF 143
T++ + ++ + S KA L+ + K + + +E+ + + L D +
Sbjct: 64 ATLIALVPGKVIIITSSAKAKHLQKAIDLFKDPESKITLELWQRNNKEPELNKKLFDDVI 123
Query: 144 GAVNDQSKSGGQNSPVVGHISREAPEGKLLETWN----EKLKKANFALSDVSNGFSDLFA 199
+N K+ VG +++ +GK WN +K+ F + D+S G S ++
Sbjct: 124 ALINSAGKT-------VGIPEKDSYQGKFXTEWNPVWEAAVKENEFNVIDISLGLSKVWE 176
Query: 200 IKDDTELTNIKKAAFLS-----SSVMKQFVVPKLEKVIDEEKKVSHSSLMDETEKAILEP 254
+KD + + AFLS S + + + +DEE K++++ L D+ E I +
Sbjct: 177 VKD------VNEQAFLSVSSKGSDKFXDLLSNEXVRAVDEELKITNAKLSDKIENKIDDV 230
Query: 255 ARIK-------------VKLKAENVDICYPPIFQSGGEFDLKPSASSNDNYLYYDSTSVI 301
+K K + +D Y PI QSG +FDL+ SA S ++ LY I
Sbjct: 231 KFLKQLSPDLSALCPPNYKFNFDLLDWTYSPIIQSGKKFDLRVSARSTNDQLY--GNGCI 288
Query: 302 ICAVGSRYNSYCSNVARTFLIDANTVQSKAYEVLLKAH-EAAISALKSGNKVSAAYKAAS 360
+ + G RYN+YCSN+ RTFLID + + Y+ LL E + LK G Y++
Sbjct: 289 LASCGIRYNNYCSNITRTFLIDPSEEXANNYDFLLTLQKEIVTNILKPGRTPKEVYESVI 348
Query: 361 TVVEKDAPELAANLTRNAGTGIGLEFRESGLSLNAKND-RILKAGMVFNVSLGFQNLQTE 419
+EK PEL N T+N G+ IGLEFR+S LN KND R ++ G FN+S GF NL+
Sbjct: 349 EYIEKTKPELVPNFTKNIGSLIGLEFRDSNFILNVKNDYRKIQRGDCFNISFGFNNLKDS 408
Query: 420 NKNPKTQKFSVLLADTVIV--GEKVPDIVTSKSSKAVKDVAYSFNEDD 465
+++ LADTV + E P + +KA +++ FN ++
Sbjct: 409 Q---SANNYALQLADTVQIPLDETEPPRFLTNYTKAKSQISFYFNNEE 453
>pdb|4FKC|A Chain A, Recombinant Prolidase From Thermococcus Sibiricus
Length = 377
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/261 (24%), Positives = 111/261 (42%), Gaps = 37/261 (14%)
Query: 185 FALSDVSNGFSDLFAIKDDTELTNIKKAAFLSSSVMKQFVVPKLEKVIDEEKKVSHSSLM 244
++L +S S+L IKD E+ KKAA + V +F+ KLE
Sbjct: 135 YSLHPISPVISELREIKDKDEIKAHKKAAEIVDKVFYRFIEGKLE--------------- 179
Query: 245 DETEKAILEPARIKVKLKAENVDICYPPIFQSGGEFDLKPSASS---NDNYLYYDSTSVI 301
++E+ + +K + D+ + PI SG P+ ++ ++ V+
Sbjct: 180 GKSERELANRIEYMIKNEFGADDVSFEPIVASG------PNGANPHHRPSHRKIRKGDVV 233
Query: 302 ICAVGSRYNSYCSNVARTFLIDANTVQ-SKAYEVLLKAHEAAISALKSGNKVSAAYKAAS 360
I G++Y YCS+V RT ++ + + K YE++ +A E A+ + G A
Sbjct: 234 IFDYGAKYLGYCSDVTRTVVVGPPSEEVKKVYEIVKEAQETAVQKVAEGIPAEVVDATAR 293
Query: 361 TVVEKDAPELAANLTRNAGTGIGLEFRESGLSLNAKNDRILKAGMVFNVSLGFQNLQTEN 420
++ K G G+G++ E ++ N +ILK GMVF + G LQ
Sbjct: 294 GIISKYG--YGEYFIHRTGHGLGIDVHEEPY-ISPGNKKILKDGMVFTIEPGIY-LQG-- 347
Query: 421 KNPKTQKFSVLLADTVIVGEK 441
KF V + D V + +K
Sbjct: 348 ------KFGVRIEDDVALVDK 362
>pdb|1WN1|A Chain A, Crystal Structure Of Dipeptiase From Pyrococcus Horikoshii
Ot3
pdb|1WN1|B Chain B, Crystal Structure Of Dipeptiase From Pyrococcus Horikoshii
Ot3
pdb|2HOW|A Chain A, Dipeptidase (Ph0974) From Pyrococcus Horikoshii Ot3
pdb|2HOW|B Chain B, Dipeptidase (Ph0974) From Pyrococcus Horikoshii Ot3
Length = 356
Score = 55.8 bits (133), Expect = 1e-07, Method: Composition-based stats.
Identities = 58/234 (24%), Positives = 98/234 (41%), Gaps = 24/234 (10%)
Query: 180 LKKANFALSDVSNGFSDLFAIKDDTELTNIKKAAFLSSSVMKQFVVPKLEKVIDEEKKVS 239
+K F +S+ +L IKD E+ ++ A+ ++ V ++ + L
Sbjct: 111 MKLGKFTFQPLSSLIKELRMIKDKEEVKMMEHASRIADKVFEEILTWDLIG--------- 161
Query: 240 HSSLMDETEKAILEPARIKVKLKAENVDICYPPIFQSGGEFDLKPSASSNDNYLYYDSTS 299
M E E A+ +I++ ++ + I + PI SG E P + +
Sbjct: 162 ----MKERELAL----KIELLIRELSDGIAFEPIVASG-ENAANPHHEPGERKI--RKGD 210
Query: 300 VIICAVGSRYNSYCSNVARTF-LIDANTVQSKAYEVLLKAHEAAISALKSGNKVSAAYKA 358
+II G+R+ YCS++ RT L + + K YEV+ A E+A A++ G K
Sbjct: 211 IIILDYGARWKGYCSDITRTIGLGELDERLVKIYEVVKDAQESAFKAVREGIKAKDVDSR 270
Query: 359 ASTVVEKDAPELAANLTRNAGTGIGLEFRESGLSLNAKNDRILKAGMVFNVSLG 412
A V+ K G G+GL+ E + + ILK GM F + G
Sbjct: 271 AREVISKAG--YGEYFIHRTGHGLGLDVHEEPY-IGPDGEVILKNGMTFTIEPG 321
>pdb|2ZSG|A Chain A, Crystal Structure Of X-Pro Aminopeptidase From Thermotoga
Maritima Msb8
pdb|2ZSG|B Chain B, Crystal Structure Of X-Pro Aminopeptidase From Thermotoga
Maritima Msb8
Length = 359
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 96/205 (46%), Gaps = 21/205 (10%)
Query: 247 TEKAILEPARIKVKLKAENVD-ICYPPIFQSGGEFDLKPSASSNDNYLYYDSTSVIICAV 305
TEK I A ++ ++ E + + + I SG L P ++D + + VI+
Sbjct: 165 TEKEI--AALLEYTMRKEGAEGVAFDTIVASGCRSAL-PHGKASDKVV--ERGDVIVIDF 219
Query: 306 GSRYNSYCSNVARTFLIDANTVQSK-AYEVLLKAHEAAISALKSGNKVSAAYKAASTVV- 363
G+ Y +YC+++ R I + + K + ++L+A E A+ K+G A +
Sbjct: 220 GATYENYCADITRVVSIGEPSDEVKEVHSIVLEAQERALKIAKAGVTGKLLDSVAREFIR 279
Query: 364 EKDAPELAANLTRNAGTGIGLEFRESGLSLNAKNDRILKAGMVFNVSLGFQNLQTENKNP 423
EK E + + G GIGLE E G +++ +ND L +VF V G + E
Sbjct: 280 EKGYGEFFGH---SLGHGIGLEVHE-GPAISFRNDSPLPENVVFTVEPG---IYLEG--- 329
Query: 424 KTQKFSVLLADTVIVGEKVPDIVTS 448
KF + + + V++ E+ +I+T+
Sbjct: 330 ---KFGIRIEEDVVLKEQGCEILTT 351
>pdb|2BWT|A Chain A, Asp260ala Escherichia Coli Aminopeptidase P
Length = 440
Score = 38.1 bits (87), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 31/176 (17%), Positives = 72/176 (40%), Gaps = 19/176 (10%)
Query: 300 VIICAVGSRYNSYCSNVARTFLIDANTVQSK--AYEVLLKAHEAAISALKSGN------- 350
+++ A G Y Y ++ RTF ++ Q++ Y+++L++ E ++ + G
Sbjct: 256 LVLIAAGCEYKGYAGDITRTFPVNGKFTQAQREIYDIVLESLETSLRLYRPGTSILEVTG 315
Query: 351 ---KVSAAYKAASTVVEKDAPELAAN------LTRNAGTGIGLEFRESGLSLNAKNDRIL 401
++ + +++ D EL A +GL+ + G+ RIL
Sbjct: 316 EVVRIMVSGLVKLGILKGDVDELIAQNAHRPFFMHGLSHWLGLDVHDVGV-YGQDRSRIL 374
Query: 402 KAGMVFNVSLGFQNLQTENKNPKTQKFSVLLADTVIVGEKVPDIVTSKSSKAVKDV 457
+ GMV V G + + + + D +++ E + +T+ K +++
Sbjct: 375 EPGMVLTVEPGLYIAPDAEVPEQYRGIGIRIEDDIVITETGNENLTASVVKKPEEI 430
>pdb|1QXW|A Chain A, Crystal Structure Of Staphyloccocus Aureus In Complex With
An Aminoketone Inhibitor 54135.
pdb|1QXY|A Chain A, Crystal Structure Of S. Aureus Methionine Aminopeptidase
In Complex With A Ketoheterocycle 618
pdb|1QXZ|A Chain A, Crystal Structure Of S. Aureus Methionine Aminopeptidase
In Complex With A Ketoheterocycle Inhibitor 119
Length = 252
Score = 37.7 bits (86), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 72/159 (45%), Gaps = 18/159 (11%)
Query: 305 VGSRYNSYCSNVARTFLIDA--NTVQSKAYEVLLKAHEAAISALKSGNKVSAAYKAASTV 362
V + N Y ++ +F++ + ++ K +V A E AI+ +K G K+S KA
Sbjct: 94 VSALKNGYYADTGISFVVGESDDPMKQKVCDVATMAFENAIAKVKPGTKLSNIGKAVHNT 153
Query: 363 VEKDAPELAANLTRNAGTGIGLEFRESGLSL----NAKNDRILKAGMVFNVSLGFQ---N 415
++ ++ NLT G G+GL E+ + + K+ +L GMV + +
Sbjct: 154 ARQNDLKVIKNLT---GHGVGLSLHEAPAHVLNYFDPKDKTLLTEGMVLAIEPFISSNAS 210
Query: 416 LQTENKN-----PKTQKFSVLLADTVIVGEKVPDIVTSK 449
TE KN + F + TVIV + P I+T+K
Sbjct: 211 FVTEGKNEWAFETSDKSFVAQIEHTVIVTKDGP-ILTTK 248
>pdb|2V3Z|A Chain A, Glu383ala Escherichia Coli Aminopeptidase P In Complex
With Substrate
Length = 440
Score = 36.2 bits (82), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 30/176 (17%), Positives = 72/176 (40%), Gaps = 19/176 (10%)
Query: 300 VIICAVGSRYNSYCSNVARTFLIDANTVQSK--AYEVLLKAHEAAISALKSGN------- 350
+++ G Y Y ++ RTF ++ Q++ Y+++L++ E ++ + G
Sbjct: 256 LVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDIVLESLETSLRLYRPGTSILEVTG 315
Query: 351 ---KVSAAYKAASTVVEKDAPELAAN------LTRNAGTGIGLEFRESGLSLNAKNDRIL 401
++ + +++ D EL A +GL+ + G+ RIL
Sbjct: 316 EVVRIMVSGLVKLGILKGDVDELIAQNAHRPFFMHGLSHWLGLDVHDVGV-YGQDRSRIL 374
Query: 402 KAGMVFNVSLGFQNLQTENKNPKTQKFSVLLADTVIVGEKVPDIVTSKSSKAVKDV 457
+ GMV V+ G + + + + D +++ E + +T+ K +++
Sbjct: 375 EPGMVLTVAPGLYIAPDAEVPEQYRGIGIRIEDDIVITETGNENLTASVVKKPEEI 430
>pdb|2BWY|A Chain A, Glu383ala Escherichia Coli Aminopeptidase P
Length = 440
Score = 36.2 bits (82), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 30/176 (17%), Positives = 72/176 (40%), Gaps = 19/176 (10%)
Query: 300 VIICAVGSRYNSYCSNVARTFLIDANTVQSK--AYEVLLKAHEAAISALKSGN------- 350
+++ G Y Y ++ RTF ++ Q++ Y+++L++ E ++ + G
Sbjct: 256 LVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDIVLESLETSLRLYRPGTSILEVTG 315
Query: 351 ---KVSAAYKAASTVVEKDAPELAAN------LTRNAGTGIGLEFRESGLSLNAKNDRIL 401
++ + +++ D EL A +GL+ + G+ RIL
Sbjct: 316 EVVRIMVSGLVKLGILKGDVDELIAQNAHRPFFMHGLSHWLGLDVHDVGV-YGQDRSRIL 374
Query: 402 KAGMVFNVSLGFQNLQTENKNPKTQKFSVLLADTVIVGEKVPDIVTSKSSKAVKDV 457
+ GMV V+ G + + + + D +++ E + +T+ K +++
Sbjct: 375 EPGMVLTVAPGLYIAPDAEVPEQYRGIGIRIEDDIVITETGNENLTASVVKKPEEI 430
>pdb|2BWX|A Chain A, His354ala Escherichia Coli Aminopeptidase P
Length = 441
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/176 (17%), Positives = 71/176 (40%), Gaps = 19/176 (10%)
Query: 300 VIICAVGSRYNSYCSNVARTFLIDANTVQSK--AYEVLLKAHEAAISALKSGN------- 350
+++ G Y Y ++ RTF ++ Q++ Y+++L++ E ++ + G
Sbjct: 257 LVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDIVLESLETSLRLYRPGTSILEVTG 316
Query: 351 ---KVSAAYKAASTVVEKDAPELAAN------LTRNAGTGIGLEFRESGLSLNAKNDRIL 401
++ + +++ D EL A +GL+ + G+ RIL
Sbjct: 317 EVVRIMVSGLVKLGILKGDVDELIAQNAHRPFFMHGLSAWLGLDVHDVGV-YGQDRSRIL 375
Query: 402 KAGMVFNVSLGFQNLQTENKNPKTQKFSVLLADTVIVGEKVPDIVTSKSSKAVKDV 457
+ GMV V G + + + + D +++ E + +T+ K +++
Sbjct: 376 EPGMVLTVEPGLYIAPDAEVPEQYRGIGIRIEDDIVITETGNENLTASVVKKPEEI 431
>pdb|1WL9|A Chain A, Structure Of Aminopeptidase P From E. Coli
pdb|1W2M|A Chain A, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|B Chain B, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|C Chain C, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|D Chain D, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|E Chain E, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|F Chain F, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W7V|A Chain A, Znmg Substituted Aminopeptidase P From E. Coli
pdb|1W7V|B Chain B, Znmg Substituted Aminopeptidase P From E. Coli
pdb|1W7V|C Chain C, Znmg Substituted Aminopeptidase P From E. Coli
pdb|1W7V|D Chain D, Znmg Substituted Aminopeptidase P From E. Coli
pdb|1WBQ|A Chain A, Zn Mg Substituted Aminopeptidase P From E. Coli
pdb|1WBQ|B Chain B, Zn Mg Substituted Aminopeptidase P From E. Coli
pdb|1WBQ|C Chain C, Zn Mg Substituted Aminopeptidase P From E. Coli
pdb|1WBQ|D Chain D, Zn Mg Substituted Aminopeptidase P From E. Coli
Length = 440
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/176 (17%), Positives = 71/176 (40%), Gaps = 19/176 (10%)
Query: 300 VIICAVGSRYNSYCSNVARTFLIDANTVQSK--AYEVLLKAHEAAISALKSGN------- 350
+++ G Y Y ++ RTF ++ Q++ Y+++L++ E ++ + G
Sbjct: 256 LVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDIVLESLETSLRLYRPGTSILEVTG 315
Query: 351 ---KVSAAYKAASTVVEKDAPELAAN------LTRNAGTGIGLEFRESGLSLNAKNDRIL 401
++ + +++ D EL A +GL+ + G+ RIL
Sbjct: 316 EVVRIMVSGLVKLGILKGDVDELIAQNAHRPFFMHGLSHWLGLDVHDVGV-YGQDRSRIL 374
Query: 402 KAGMVFNVSLGFQNLQTENKNPKTQKFSVLLADTVIVGEKVPDIVTSKSSKAVKDV 457
+ GMV V G + + + + D +++ E + +T+ K +++
Sbjct: 375 EPGMVLTVEPGLYIAPDAEVPEQYRGIGIRIEDDIVITETGNENLTASVVKKPEEI 430
>pdb|1M35|A Chain A, Aminopeptidase P From Escherichia Coli
pdb|1M35|B Chain B, Aminopeptidase P From Escherichia Coli
pdb|1M35|C Chain C, Aminopeptidase P From Escherichia Coli
pdb|1M35|D Chain D, Aminopeptidase P From Escherichia Coli
pdb|1M35|E Chain E, Aminopeptidase P From Escherichia Coli
pdb|1M35|F Chain F, Aminopeptidase P From Escherichia Coli
pdb|1N51|A Chain A, Aminopeptidase P In Complex With The Inhibitor Apstatin
pdb|1WL6|A Chain A, Mg-Substituted Form Of E. Coli Aminopeptidase P
pdb|1WLR|A Chain A, Apo Aminopeptidase P From E. Coli
pdb|2BHA|A Chain A, E. Coli Aminopeptidase P In Complex With Substrate
pdb|2BHB|A Chain A, Zn Substituted E. Coli Aminopeptidase P
pdb|2BHC|A Chain A, Na Substituted E. Coli Aminopeptidase P
pdb|2BHD|A Chain A, Mg Substituted E. Coli Aminopeptidase P In Complex With
Product
pdb|1A16|A Chain A, Aminopeptidase P From E. Coli With The Inhibitor Pro-Leu
pdb|2BH3|A Chain A, Zn Substituted E.Coli Aminopeptidase P In Complex With
Product
pdb|2BN7|A Chain A, Mn Substituted E. Coli Aminopeptidase P In Complex With
Product And Zn
Length = 440
Score = 35.8 bits (81), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/176 (17%), Positives = 71/176 (40%), Gaps = 19/176 (10%)
Query: 300 VIICAVGSRYNSYCSNVARTFLIDANTVQSK--AYEVLLKAHEAAISALKSGN------- 350
+++ G Y Y ++ RTF ++ Q++ Y+++L++ E ++ + G
Sbjct: 256 LVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDIVLESLETSLRLYRPGTSILEVTG 315
Query: 351 ---KVSAAYKAASTVVEKDAPELAAN------LTRNAGTGIGLEFRESGLSLNAKNDRIL 401
++ + +++ D EL A +GL+ + G+ RIL
Sbjct: 316 EVVRIMVSGLVKLGILKGDVDELIAQNAHRPFFMHGLSHWLGLDVHDVGV-YGQDRSRIL 374
Query: 402 KAGMVFNVSLGFQNLQTENKNPKTQKFSVLLADTVIVGEKVPDIVTSKSSKAVKDV 457
+ GMV V G + + + + D +++ E + +T+ K +++
Sbjct: 375 EPGMVLTVEPGLYIAPDAEVPEQYRGIGIRIEDDIVITETGNENLTASVVKKPEEI 430
>pdb|1JAW|A Chain A, Aminopeptidase P From E. Coli Low Ph Form
Length = 440
Score = 35.8 bits (81), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/176 (17%), Positives = 71/176 (40%), Gaps = 19/176 (10%)
Query: 300 VIICAVGSRYNSYCSNVARTFLIDANTVQSK--AYEVLLKAHEAAISALKSGN------- 350
+++ G Y Y ++ RTF ++ Q++ Y+++L++ E ++ + G
Sbjct: 256 LVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDIVLESLETSLRLYRPGTSILEVTG 315
Query: 351 ---KVSAAYKAASTVVEKDAPELAAN------LTRNAGTGIGLEFRESGLSLNAKNDRIL 401
++ + +++ D EL A +GL+ + G+ RIL
Sbjct: 316 EVVRIMVSGLVKLGILKGDVDELIAQNAHRPFFMHGLSHWLGLDVHDVGV-YGQDRSRIL 374
Query: 402 KAGMVFNVSLGFQNLQTENKNPKTQKFSVLLADTVIVGEKVPDIVTSKSSKAVKDV 457
+ GMV V G + + + + D +++ E + +T+ K +++
Sbjct: 375 EPGMVLTVEPGLYIAPDAEVPEQYRGIGIRIEDDIVITETGNENLTASVVKKPEEI 430
>pdb|2BWS|A Chain A, His243ala Escherichia Coli Aminopeptidase P
pdb|2V3X|A Chain A, His243ala Escherichia Coli Aminopeptidase P In Complex
With Substrate
Length = 440
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/176 (17%), Positives = 71/176 (40%), Gaps = 19/176 (10%)
Query: 300 VIICAVGSRYNSYCSNVARTFLIDANTVQSK--AYEVLLKAHEAAISALKSGN------- 350
+++ G Y Y ++ RTF ++ Q++ Y+++L++ E ++ + G
Sbjct: 256 LVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDIVLESLETSLRLYRPGTSILEVTG 315
Query: 351 ---KVSAAYKAASTVVEKDAPELAAN------LTRNAGTGIGLEFRESGLSLNAKNDRIL 401
++ + +++ D EL A +GL+ + G+ RIL
Sbjct: 316 EVVRIMVSGLVKLGILKGDVDELIAQNAHRPFFMHGLSHWLGLDVHDVGV-YGQDRSRIL 374
Query: 402 KAGMVFNVSLGFQNLQTENKNPKTQKFSVLLADTVIVGEKVPDIVTSKSSKAVKDV 457
+ GMV V G + + + + D +++ E + +T+ K +++
Sbjct: 375 EPGMVLTVEPGLYIAPDAEVPEQYRGIGIRIEDDIVITETGNENLTASVVKKPEEI 430
>pdb|2BWW|A Chain A, His350ala Escherichia Coli Aminopeptidase P
Length = 440
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 34/176 (19%), Positives = 75/176 (42%), Gaps = 19/176 (10%)
Query: 300 VIICAVGSRYNSYCSNVARTFLIDANTVQSK--AYEVLLKAHEAAISALKSGN------- 350
+++ G Y Y ++ RTF ++ Q++ Y+++L++ E ++ + G
Sbjct: 256 LVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDIVLESLETSLRLYRPGTSILEVTG 315
Query: 351 ---KVSAAYKAASTVVEKDAPELAA-NLTR---NAGTG--IGLEFRESGLSLNAKNDRIL 401
++ + +++ D EL A N R AG +GL+ + G+ RIL
Sbjct: 316 EVVRIMVSGLVKLGILKGDVDELIAQNAHRPFFMAGLSHWLGLDVHDVGV-YGQDRSRIL 374
Query: 402 KAGMVFNVSLGFQNLQTENKNPKTQKFSVLLADTVIVGEKVPDIVTSKSSKAVKDV 457
+ GMV V G + + + + D +++ E + +T+ K +++
Sbjct: 375 EPGMVLTVEPGLYIAPDAEVPEQYRGIGIRIEDDIVITETGNENLTASVVKKPEEI 430
>pdb|2BWV|A Chain A, His361ala Escherichia Coli Aminopeptidase P
pdb|2V3Y|A Chain A, His361ala Escherichia Coli Aminopeptidase P In Complex
With Product
Length = 440
Score = 35.0 bits (79), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 30/176 (17%), Positives = 71/176 (40%), Gaps = 19/176 (10%)
Query: 300 VIICAVGSRYNSYCSNVARTFLIDANTVQSK--AYEVLLKAHEAAISALKSGN------- 350
+++ G Y Y ++ RTF ++ Q++ Y+++L++ E ++ + G
Sbjct: 256 LVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDIVLESLETSLRLYRPGTSILEVTG 315
Query: 351 ---KVSAAYKAASTVVEKDAPELAAN------LTRNAGTGIGLEFRESGLSLNAKNDRIL 401
++ + +++ D EL A +GL+ + G+ RIL
Sbjct: 316 EVVRIMVSGLVKLGILKGDVDELIAQNAHRPFFMHGLSHWLGLDVADVGV-YGQDRSRIL 374
Query: 402 KAGMVFNVSLGFQNLQTENKNPKTQKFSVLLADTVIVGEKVPDIVTSKSSKAVKDV 457
+ GMV V G + + + + D +++ E + +T+ K +++
Sbjct: 375 EPGMVLTVEPGLYIAPDAEVPEQYRGIGIRIEDDIVITETGNENLTASVVKKPEEI 430
>pdb|2BWU|A Chain A, Asp271ala Escherichia Coli Aminopeptidase P
Length = 440
Score = 34.7 bits (78), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 30/176 (17%), Positives = 70/176 (39%), Gaps = 19/176 (10%)
Query: 300 VIICAVGSRYNSYCSNVARTFLIDANTVQSK--AYEVLLKAHEAAISALKSGN------- 350
+++ G Y Y + RTF ++ Q++ Y+++L++ E ++ + G
Sbjct: 256 LVLIDAGCEYKGYAGAITRTFPVNGKFTQAQREIYDIVLESLETSLRLYRPGTSILEVTG 315
Query: 351 ---KVSAAYKAASTVVEKDAPELAAN------LTRNAGTGIGLEFRESGLSLNAKNDRIL 401
++ + +++ D EL A +GL+ + G+ RIL
Sbjct: 316 EVVRIMVSGLVKLGILKGDVDELIAQNAHRPFFMHGLSHWLGLDVHDVGV-YGQDRSRIL 374
Query: 402 KAGMVFNVSLGFQNLQTENKNPKTQKFSVLLADTVIVGEKVPDIVTSKSSKAVKDV 457
+ GMV V G + + + + D +++ E + +T+ K +++
Sbjct: 375 EPGMVLTVEPGLYIAPDAEVPEQYRGIGIRIEDDIVITETGNENLTASVVKKPEEI 430
>pdb|3D8X|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Nadph
Dependent Thioredoxin Reductase 1
pdb|3D8X|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Nadph
Dependent Thioredoxin Reductase 1
Length = 326
Score = 33.5 bits (75), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 556 LMIQVDQKNEAILLPIYGSMVPF-HVATVKSVSSQQDTNRSCYIRIIFNVPGTSFT 610
L I+ +KNE LP+ G H K V+ Q DT+ + YI+ VPG+S T
Sbjct: 233 LRIKNTKKNEETDLPVSGLFYAIGHTPATKIVAGQVDTDEAGYIK---TVPGSSLT 285
>pdb|3ITJ|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Thioredoxin
Reductase 1 (trr1)
pdb|3ITJ|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Thioredoxin
Reductase 1 (trr1)
pdb|3ITJ|C Chain C, Crystal Structure Of Saccharomyces Cerevisiae Thioredoxin
Reductase 1 (trr1)
pdb|3ITJ|D Chain D, Crystal Structure Of Saccharomyces Cerevisiae Thioredoxin
Reductase 1 (trr1)
Length = 338
Score = 33.5 bits (75), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 556 LMIQVDQKNEAILLPIYGSMVPF-HVATVKSVSSQQDTNRSCYIRIIFNVPGTSFT 610
L I+ +KNE LP+ G H K V+ Q DT+ + YI+ VPG+S T
Sbjct: 245 LRIKNTKKNEETDLPVSGLFYAIGHTPATKIVAGQVDTDEAGYIK---TVPGSSLT 297
>pdb|2Q8K|A Chain A, The Crystal Structure Of Ebp1
Length = 401
Score = 31.6 bits (70), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 7/81 (8%)
Query: 288 SNDNYLYYDSTSVIICAVGSRYNSYCSNVARTFLID---ANTVQSKAYEVLLKAH---EA 341
S+ +Y+ + V I +G + + +NVA TF++D V + +V+ AH EA
Sbjct: 101 SDQDYILKEGDLVKI-DLGVHVDGFIANVAHTFVVDVAQGTQVTGRKADVIKAAHLCAEA 159
Query: 342 AISALKSGNKVSAAYKAASTV 362
A+ +K GN+ + +A + V
Sbjct: 160 ALRLVKPGNQNTQVTEAWNKV 180
>pdb|3J2I|A Chain A, Structure Of Late Pre-60s Ribosomal Subunits With Nuclear
Export Factor Arx1 Bound At The Peptide Exit Tunnel
Length = 394
Score = 31.6 bits (70), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 7/81 (8%)
Query: 288 SNDNYLYYDSTSVIICAVGSRYNSYCSNVARTFLID---ANTVQSKAYEVLLKAH---EA 341
S+ +Y+ + V I +G + + +NVA TF++D V + +V+ AH EA
Sbjct: 94 SDQDYILKEGDLVKI-DLGVHVDGFIANVAHTFVVDVAQGTQVTGRKADVIKAAHLCAEA 152
Query: 342 AISALKSGNKVSAAYKAASTV 362
A+ +K GN+ + +A + V
Sbjct: 153 ALRLVKPGNQNTQVTEAWNKV 173
>pdb|1CHM|B Chain B, Enzymatic Mechanism Of Creatine Amidinohydrolase As
Deduced From Crystal Structures
Length = 401
Score = 30.4 bits (67), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 48/108 (44%), Gaps = 15/108 (13%)
Query: 311 SYCSNVARTFLID-ANTVQSKAYEVLLKAHEAAISALKSGNKVSAAYKAASTVVEKDAPE 369
Y + + RT +D + + ++V ++ HEA + +K G + S + + +
Sbjct: 255 GYYTALERTLFLDHCSDDHLRLWQVNVEVHEAGLKLIKPGARCSDIARELNEIF------ 308
Query: 370 LAANLTRNAGTGIGLEF--------RESGLSLNAKNDRILKAGMVFNV 409
L ++ + G G F RE+GL L D +L+ GMV ++
Sbjct: 309 LKHDVLQYRTFGYGHSFGTLSHYYGREAGLELREDIDTVLEPGMVVSM 356
>pdb|1CHM|A Chain A, Enzymatic Mechanism Of Creatine Amidinohydrolase As
Deduced From Crystal Structures
Length = 401
Score = 30.4 bits (67), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 48/108 (44%), Gaps = 15/108 (13%)
Query: 311 SYCSNVARTFLID-ANTVQSKAYEVLLKAHEAAISALKSGNKVSAAYKAASTVVEKDAPE 369
Y + + RT +D + + ++V ++ HEA + +K G + S + + +
Sbjct: 255 GYYTALERTLFLDHCSDDHLRLWQVNVEVHEAGLKLIKPGARCSDIARELNEIF------ 308
Query: 370 LAANLTRNAGTGIGLEF--------RESGLSLNAKNDRILKAGMVFNV 409
L ++ + G G F RE+GL L D +L+ GMV ++
Sbjct: 309 LKHDVLQYRTFGYGHSFGTLSHYYGREAGLELREDIDTVLEPGMVVSM 356
>pdb|2DBU|B Chain B, Crystal Structure Of Gamma-Glutamyltranspeptidase From
Escherichia Coli
pdb|2DBU|D Chain D, Crystal Structure Of Gamma-Glutamyltranspeptidase From
Escherichia Coli
pdb|2DBX|B Chain B, Crystal Structure Of Gamma-glutamyltranspeptidase From
Escherichia Coli Complexed With L-glutamate
pdb|2DBX|D Chain D, Crystal Structure Of Gamma-glutamyltranspeptidase From
Escherichia Coli Complexed With L-glutamate
pdb|2DG5|B Chain B, Crystal Structure Of Gamma-Glutamyl Transpeptidase From
Escherichia Coli In Complex With Hydrolyzed Glutathione
pdb|2DG5|D Chain D, Crystal Structure Of Gamma-Glutamyl Transpeptidase From
Escherichia Coli In Complex With Hydrolyzed Glutathione
pdb|2E0X|B Chain B, Crystal Structure Of Gamma-Glutamyltranspeptidase From
Escherichia Coli (Monoclinic Form)
pdb|2E0X|D Chain D, Crystal Structure Of Gamma-Glutamyltranspeptidase From
Escherichia Coli (Monoclinic Form)
pdb|2E0Y|B Chain B, Crystal Structure Of The Samarium Derivative Of Mature
Gamma- Glutamyltranspeptidase From Escherichia Coli
pdb|2E0Y|D Chain D, Crystal Structure Of The Samarium Derivative Of Mature
Gamma- Glutamyltranspeptidase From Escherichia Coli
pdb|2DBW|B Chain B, Crystal Structure Of Gamma-Glutamyltranspeptidase From
Escherichia Coli Acyl-Enzyme Intermediate
pdb|2DBW|D Chain D, Crystal Structure Of Gamma-Glutamyltranspeptidase From
Escherichia Coli Acyl-Enzyme Intermediate
Length = 190
Score = 30.4 bits (67), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 361 TVVEKDAPELAANLTRNAGTGIGLEFRESGLSLNAKNDRI-LKAGM--VFNVSLGFQNLQ 417
+VV+KD +A T N G G+ ESG+ LN + D K G+ V+ + G N
Sbjct: 5 SVVDKDGNAVAVTYTLNTTFGTGIVAGESGILLNNQXDDFSAKPGVPNVYGLVGGDANAV 64
Query: 418 TENKNP 423
NK P
Sbjct: 65 GPNKRP 70
>pdb|1JJ2|G Chain G, Fully Refined Crystal Structure Of The Haloarcula
Marismortui Large Ribosomal Subunit At 2.4 Angstrom
Resolution
pdb|1KQS|G Chain G, The Haloarcula Marismortui 50s Complexed With A
Pretranslocational Intermediate In Protein Synthesis
pdb|1K8A|I Chain I, Co-Crystal Structure Of Carbomycin A Bound To The 50s
Ribosomal Subunit Of Haloarcula Marismortui
pdb|1K9M|I Chain I, Co-Crystal Structure Of Tylosin Bound To The 50s Ribosomal
Subunit Of Haloarcula Marismortui
pdb|1KD1|I Chain I, Co-crystal Structure Of Spiramycin Bound To The 50s
Ribosomal Subunit Of Haloarcula Marismortui
pdb|1M1K|I Chain I, Co-Crystal Structure Of Azithromycin Bound To The 50s
Ribosomal Subunit Of Haloarcula Marismortui
pdb|1M90|I Chain I, Co-Crystal Structure Of Cca-Phe-Caproic Acid-Biotin And
Sparsomycin Bound To The 50s Ribosomal Subunit
pdb|1K73|I Chain I, Co-Crystal Structure Of Anisomycin Bound To The 50s
Ribosomal Subunit
pdb|1KC8|I Chain I, Co-Crystal Structure Of Blasticidin S Bound To The 50s
Ribosomal Subunit
pdb|1N8R|I Chain I, Structure Of Large Ribosomal Subunit In Complex With
Virginiamycin M
pdb|1NJI|I Chain I, Structure Of Chloramphenicol Bound To The 50s Ribosomal
Subunit
pdb|1Q7Y|I Chain I, Crystal Structure Of Ccdap-puromycin Bound At The Peptidyl
Transferase Center Of The 50s Ribosomal Subunit
pdb|1Q81|I Chain I, Crystal Structure Of Minihelix With 3' Puromycin Bound To
A- Site Of The 50s Ribosomal Subunit.
pdb|1Q82|I Chain I, Crystal Structure Of Cc-Puromycin Bound To The A-Site Of
The 50s Ribosomal Subunit
pdb|1Q86|I Chain I, Crystal Structure Of Cca-Phe-Cap-Biotin Bound
Simultaneously At Half Occupancy To Both The A-Site And
P- Site Of The The 50s Ribosomal Subunit.
pdb|1QVF|G Chain G, Structure Of A Deacylated Trna Minihelix Bound To The E
Site Of The Large Ribosomal Subunit Of Haloarcula
Marismortui
pdb|1QVG|G Chain G, Structure Of Cca Oligonucleotide Bound To The Trna Binding
Sites Of The Large Ribosomal Subunit Of Haloarcula
Marismortui
pdb|1S72|G Chain G, Refined Crystal Structure Of The Haloarcula Marismortui
Large Ribosomal Subunit At 2.4 Angstrom Resolution
pdb|1W2B|G Chain G, Trigger Factor Ribosome Binding Domain In Complex With 50s
pdb|1YHQ|G Chain G, Crystal Structure Of Azithromycin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YI2|G Chain G, Crystal Structure Of Erythromycin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YIJ|G Chain G, Crystal Structure Of Telithromycin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YIT|G Chain G, Crystal Structure Of Virginiamycin M And S Bound To The
50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YJ9|G Chain G, Crystal Structure Of The Mutant 50s Ribosomal Subunit Of
Haloarcula Marismortui Containing A Three Residue
Deletion In L22
pdb|1YJN|G Chain G, Crystal Structure Of Clindamycin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YJW|G Chain G, Crystal Structure Of Quinupristin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQ4|G Chain G, The Structure Of The Transition State Analogue "daa" Bound
To The Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQ5|G Chain G, The Structure Of The Transition State Analogue "raa" Bound
To The Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQ6|G Chain G, The Structure Of C-Hpmn And Cca-Phe-Cap-Bio Bound To The
Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQ7|G Chain G, The Structure Of The Transition State Analogue "dca" Bound
To The Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQ8|G Chain G, The Structure Of Ccda-Phe-Cap-Bio And The Antibiotic
Sparsomycin Bound To The Large Ribosomal Subunit Of
Haloarcula Marismortui
pdb|1VQ9|G Chain G, The Structure Of Cca-Phe-Cap-Bio And The Antibiotic
Sparsomycin Bound To The Large Ribosomal Subunit Of
Haloarcula Marismortui
pdb|1VQK|G Chain G, The Structure Of Ccda-Phe-Cap-Bio Bound To The A Site Of
The Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQL|G Chain G, The Structure Of The Transition State Analogue "dcsn"
Bound To The Large Ribosomal Subunit Of Haloarcula
Marismortui
pdb|1VQM|G Chain G, The Structure Of The Transition State Analogue "dan" Bound
To The Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQN|G Chain G, The Structure Of Cc-hpmn And Cca-phe-cap-bio Bound To The
Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQO|G Chain G, The Structure Of Ccpmn Bound To The Large Ribosomal
Subunit Haloarcula Marismortui
pdb|1VQP|G Chain G, The Structure Of The Transition State Analogue "rap" Bound
To The Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|2OTJ|G Chain G, 13-Deoxytedanolide Bound To The Large Subunit Of
Haloarcula Marismortui
pdb|2OTL|G Chain G, Girodazole Bound To The Large Subunit Of Haloarcula
Marismortui
pdb|2QA4|G Chain G, A More Complete Structure Of The The L7L12 STALK OF THE
Haloarcula Marismortui 50s Large Ribosomal Subunit
pdb|3CME|G Chain G, The Structure Of Ca And Cca-Phe-Cap-Bio Bound To The Large
Ribosomal Subunit Of Haloarcula Marismortui
pdb|2QEX|G Chain G, Negamycin Binds To The Wall Of The Nascent Chain Exit
Tunnel Of The 50s Ribosomal Subunit
pdb|3CXC|G Chain G, The Structure Of An Enhanced Oxazolidinone Inhibitor Bound
To The 50s Ribosomal Subunit Of H. Marismortui
Length = 348
Score = 30.0 bits (66), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 56/134 (41%), Gaps = 39/134 (29%)
Query: 382 IGLEFRESGLSLNA--------------------KNDRILKAGMVFNVSLGFQ------- 414
+G+E +E GL L A ++D AG FN+S+
Sbjct: 182 LGIEPKEVGLDLRAVFADGVLFEPEELELDIDEYRSDIQAAAGRAFNLSVNADYPTATTA 241
Query: 415 --NLQTENKNPKTQKFSVLLADTVIVGEKVPDIVTSKSSKAVKDVAYSFNEDDEE---EE 469
LQ++ N K+ + D E VPD+V SK+ V+ +A DDEE EE
Sbjct: 242 PTMLQSDRGNAKSLALQAAIEDP----EVVPDLV-SKADAQVRALASQI--DDEEALPEE 294
Query: 470 QPKVKAEVKGGEPT 483
V+A+V EPT
Sbjct: 295 LQGVEADVATEEPT 308
>pdb|2E0W|A Chain A, T391a Precursor Mutant Protein Of
Gamma-Glutamyltranspeptidase From Escherichia Coli
pdb|2E0W|B Chain B, T391a Precursor Mutant Protein Of
Gamma-Glutamyltranspeptidase From Escherichia Coli
Length = 556
Score = 30.0 bits (66), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 361 TVVEKDAPELAANLTRNAGTGIGLEFRESGLSLNAKNDRI-LKAGM--VFNVSLGFQNLQ 417
+VV+KD +A T N G G+ ESG+ LN + D K G+ V+ + G N
Sbjct: 371 SVVDKDGNAVAVTYTLNTTFGTGIVAGESGILLNNQMDDFSAKPGVPNVYGLVGGDANAV 430
Query: 418 TENKNP 423
NK P
Sbjct: 431 GPNKRP 436
>pdb|2Z8J|B Chain B, Crystal Structure Of Escherichia Coli
Gamma-Glutamyltranspeptidase In Complex With Azaserine
Prepared In The Dark
Length = 190
Score = 29.6 bits (65), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 361 TVVEKDAPELAANLTRNAGTGIGLEFRESGLSLNAKNDRI-LKAGM--VFNVSLGFQNLQ 417
+VV+KD +A T N G G+ ESG+ LN + D K G+ V+ + G N
Sbjct: 5 SVVDKDGNAVAVTYTLNTTFGTGIVAGESGILLNNQMDDFSAKPGVPNVYGLVGGDANAV 64
Query: 418 TENKNP 423
NK P
Sbjct: 65 GPNKRP 70
>pdb|2Z8I|B Chain B, Crystal Structure Of Escherichia Coli
Gamma-Glutamyltranspeptidase In Complex With Azaserine
pdb|2Z8I|D Chain D, Crystal Structure Of Escherichia Coli
Gamma-Glutamyltranspeptidase In Complex With Azaserine
pdb|2Z8J|D Chain D, Crystal Structure Of Escherichia Coli
Gamma-Glutamyltranspeptidase In Complex With Azaserine
Prepared In The Dark
pdb|2Z8K|B Chain B, Crystal Structure Of Escherichia Coli
Gamma-Glutamyltranspeptidase In Complex With Acivicin
pdb|2Z8K|D Chain D, Crystal Structure Of Escherichia Coli
Gamma-Glutamyltranspeptidase In Complex With Acivicin
Length = 190
Score = 29.6 bits (65), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 361 TVVEKDAPELAANLTRNAGTGIGLEFRESGLSLNAKNDRI-LKAGM--VFNVSLGFQNLQ 417
+VV+KD +A T N G G+ ESG+ LN + D K G+ V+ + G N
Sbjct: 5 SVVDKDGNAVAVTYTLNTTFGTGIVAGESGILLNNQMDDFSAKPGVPNVYGLVGGDANAV 64
Query: 418 TENKNP 423
NK P
Sbjct: 65 GPNKRP 70
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.131 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,887,894
Number of Sequences: 62578
Number of extensions: 1230679
Number of successful extensions: 2522
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 2495
Number of HSP's gapped (non-prelim): 39
length of query: 1073
length of database: 14,973,337
effective HSP length: 109
effective length of query: 964
effective length of database: 8,152,335
effective search space: 7858850940
effective search space used: 7858850940
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 57 (26.6 bits)