Query 001468
Match_columns 1073
No_of_seqs 397 out of 1860
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 01:35:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001468.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001468hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1189 Global transcriptional 100.0 1E-245 2E-250 2074.9 62.5 942 59-1041 2-955 (960)
2 COG5406 Nucleosome binding fac 100.0 6E-215 1E-219 1783.8 57.1 975 22-1032 1-996 (1001)
3 PF08644 SPT16: FACT complex s 100.0 1.8E-58 3.8E-63 459.8 16.4 152 558-712 1-152 (152)
4 PRK09795 aminopeptidase; Provi 100.0 2.8E-55 6.1E-60 505.1 37.9 350 34-456 2-357 (361)
5 TIGR02993 ectoine_eutD ectoine 100.0 5.8E-53 1.3E-57 490.3 36.6 373 25-456 4-389 (391)
6 COG0006 PepP Xaa-Pro aminopept 100.0 4.8E-51 1E-55 473.8 38.6 369 27-457 5-383 (384)
7 PRK10879 proline aminopeptidas 100.0 1.8E-51 3.8E-56 483.3 34.1 388 27-461 1-432 (438)
8 PRK14575 putative peptidase; P 100.0 2.2E-50 4.8E-55 470.5 36.8 363 32-455 9-403 (406)
9 PRK14576 putative endopeptidas 100.0 1.1E-48 2.4E-53 456.1 38.8 363 32-455 9-402 (405)
10 cd01091 CDC68-like Related to 100.0 8.7E-48 1.9E-52 419.0 24.7 240 206-448 1-243 (243)
11 PRK15173 peptidase; Provisiona 100.0 1.6E-45 3.5E-50 417.4 30.4 277 140-456 42-321 (323)
12 PRK13607 proline dipeptidase; 100.0 2.5E-44 5.5E-49 422.0 29.4 373 30-448 6-438 (443)
13 KOG2414 Putative Xaa-Pro amino 100.0 4.8E-44 1E-48 392.4 24.8 389 25-458 60-481 (488)
14 PRK07281 methionine aminopepti 100.0 8E-42 1.7E-46 379.5 26.5 241 198-453 2-283 (286)
15 PRK12897 methionine aminopepti 100.0 3.8E-41 8.2E-46 368.7 25.6 233 198-448 2-247 (248)
16 PRK12318 methionine aminopepti 100.0 1.8E-40 4E-45 370.5 27.0 244 192-452 34-291 (291)
17 TIGR00500 met_pdase_I methioni 100.0 3.6E-40 7.8E-45 360.5 27.1 232 199-448 2-246 (247)
18 PRK05716 methionine aminopepti 100.0 4.6E-40 1E-44 360.5 26.8 238 197-453 2-252 (252)
19 PRK12896 methionine aminopepti 100.0 3.8E-39 8.3E-44 353.8 26.4 235 196-448 6-254 (255)
20 cd01090 Creatinase Creatine am 100.0 4.3E-39 9.4E-44 348.1 24.2 221 206-447 1-227 (228)
21 PLN03158 methionine aminopepti 100.0 9.1E-39 2E-43 367.8 27.9 250 193-460 130-392 (396)
22 cd01087 Prolidase Prolidase. E 100.0 1.2E-38 2.7E-43 347.6 24.2 222 206-448 1-243 (243)
23 KOG2737 Putative metallopeptid 100.0 2.1E-38 4.4E-43 344.4 21.4 397 26-462 11-479 (492)
24 cd01092 APP-like Similar to Pr 100.0 1E-36 2.2E-41 323.5 24.1 207 206-443 1-208 (208)
25 cd01086 MetAP1 Methionine Amin 100.0 4.1E-36 8.9E-41 326.6 25.8 222 206-448 1-238 (238)
26 PF00557 Peptidase_M24: Metall 100.0 4.6E-35 9.9E-40 311.3 23.3 204 207-440 1-207 (207)
27 KOG0526 Nucleosome-binding fac 100.0 4.4E-35 9.5E-40 329.7 21.8 210 701-926 216-432 (615)
28 cd01085 APP X-Prolyl Aminopept 100.0 1.3E-34 2.7E-39 312.3 23.1 208 207-446 5-222 (224)
29 cd01066 APP_MetAP A family inc 100.0 9.4E-33 2E-37 290.5 23.3 206 206-443 1-207 (207)
30 cd01089 PA2G4-like Related to 100.0 6.7E-31 1.5E-35 284.4 22.2 214 206-448 1-228 (228)
31 COG5165 POB3 Nucleosome-bindin 100.0 1.3E-30 2.7E-35 281.1 17.3 210 701-925 225-440 (508)
32 COG0024 Map Methionine aminope 100.0 9.1E-29 2E-33 267.0 25.7 233 199-448 4-251 (255)
33 KOG2738 Putative methionine am 100.0 5E-28 1.1E-32 257.1 21.6 240 196-452 112-363 (369)
34 PTZ00053 methionine aminopepti 99.9 2.5E-26 5.5E-31 267.0 24.5 198 196-414 148-360 (470)
35 TIGR00495 crvDNA_42K 42K curve 99.9 6.4E-26 1.4E-30 262.1 27.3 202 198-414 11-232 (389)
36 KOG2413 Xaa-Pro aminopeptidase 99.9 1E-26 2.3E-31 268.4 18.7 373 25-466 167-568 (606)
37 PRK08671 methionine aminopepti 99.9 5.2E-26 1.1E-30 254.7 23.0 183 205-414 1-189 (291)
38 TIGR00501 met_pdase_II methion 99.9 1.2E-25 2.7E-30 251.9 21.9 185 203-414 2-192 (295)
39 cd01088 MetAP2 Methionine Amin 99.9 4.2E-25 9.2E-30 247.3 21.1 182 206-414 1-188 (291)
40 PF14826 FACT-Spt16_Nlob: FACT 99.9 3.7E-25 8.1E-30 226.4 4.4 159 27-193 1-162 (163)
41 PF08512 Rtt106: Histone chape 99.9 9.3E-23 2E-27 190.9 8.3 90 837-926 1-94 (95)
42 PF03531 SSrecog: Structure-sp 99.2 1.6E-11 3.5E-16 130.9 6.8 66 701-768 151-218 (222)
43 PF01321 Creatinase_N: Creatin 98.9 4.1E-09 8.9E-14 103.4 9.8 128 35-200 1-132 (132)
44 KOG2776 Metallopeptidase [Gene 98.6 9E-07 2E-11 98.5 15.2 158 199-367 14-181 (398)
45 KOG2775 Metallopeptidase [Gene 98.5 1.8E-06 4E-11 93.6 16.2 190 204-412 83-285 (397)
46 PF05195 AMP_N: Aminopeptidase 97.3 0.00019 4.2E-09 71.9 3.3 70 27-104 1-77 (134)
47 KOG1832 HIV-1 Vpr-binding prot 96.8 0.00093 2E-08 81.5 3.8 30 545-581 879-908 (1516)
48 PF04931 DNA_pol_phi: DNA poly 96.6 0.0016 3.6E-08 83.2 5.0 6 142-147 42-47 (784)
49 PLN03158 methionine aminopepti 96.6 0.0089 1.9E-07 70.4 10.6 112 311-439 126-246 (396)
50 cd01086 MetAP1 Methionine Amin 96.6 0.017 3.7E-07 63.1 11.5 100 326-440 2-105 (238)
51 KOG2413 Xaa-Pro aminopeptidase 96.4 0.013 2.9E-07 70.2 10.0 131 35-190 11-142 (606)
52 PF04931 DNA_pol_phi: DNA poly 96.4 0.0021 4.7E-08 82.2 3.7 7 910-916 625-631 (784)
53 KOG1832 HIV-1 Vpr-binding prot 96.3 0.0029 6.2E-08 77.4 3.5 41 869-919 1324-1368(1516)
54 PRK05716 methionine aminopepti 96.1 0.036 7.9E-07 61.1 11.0 98 326-439 12-114 (252)
55 KOG3064 RNA-binding nuclear pr 95.9 0.0058 1.3E-07 65.7 3.1 44 833-877 30-73 (303)
56 PRK12896 methionine aminopepti 95.5 0.068 1.5E-06 59.1 10.2 109 316-439 4-119 (255)
57 cd01088 MetAP2 Methionine Amin 95.4 0.11 2.3E-06 59.1 11.3 95 327-439 3-99 (291)
58 KOG2738 Putative methionine am 95.0 0.081 1.7E-06 58.6 8.4 98 326-440 123-226 (369)
59 COG0024 Map Methionine aminope 95.0 0.15 3.2E-06 56.6 10.5 86 327-414 13-100 (255)
60 KOG0526 Nucleosome-binding fac 94.8 0.014 3.1E-07 68.5 2.0 137 788-959 291-434 (615)
61 KOG1189 Global transcriptional 94.6 0.019 4.2E-07 69.8 2.7 96 209-323 259-367 (960)
62 PF10446 DUF2457: Protein of u 93.9 0.021 4.6E-07 66.3 0.8 19 912-932 11-29 (458)
63 PF05764 YL1: YL1 nuclear prot 93.7 0.14 3E-06 56.5 6.9 8 934-941 11-18 (240)
64 TIGR00495 crvDNA_42K 42K curve 93.7 0.45 9.8E-06 56.2 11.4 104 327-440 21-130 (389)
65 PRK08671 methionine aminopepti 93.1 0.78 1.7E-05 52.1 11.7 97 327-439 4-100 (291)
66 TIGR00501 met_pdase_II methion 93.0 0.77 1.7E-05 52.3 11.6 97 327-439 7-103 (295)
67 PF00557 Peptidase_M24: Metall 92.2 0.85 1.8E-05 48.5 10.1 96 327-438 2-98 (207)
68 TIGR00500 met_pdase_I methioni 92.0 1.2 2.5E-05 49.1 11.1 100 327-439 11-112 (247)
69 KOG3064 RNA-binding nuclear pr 91.8 0.12 2.5E-06 56.1 2.8 15 800-814 81-95 (303)
70 PF06524 NOA36: NOA36 protein; 91.6 0.22 4.9E-06 54.1 4.6 24 867-890 122-147 (314)
71 PF04147 Nop14: Nop14-like fam 91.5 0.14 3.1E-06 66.0 3.8 13 783-795 271-283 (840)
72 PTZ00053 methionine aminopepti 91.4 1.3 2.8E-05 53.3 11.3 92 328-438 161-261 (470)
73 KOG2038 CAATT-binding transcri 91.3 0.11 2.4E-06 63.8 2.2 19 326-344 296-314 (988)
74 cd01089 PA2G4-like Related to 90.6 2.1 4.6E-05 46.7 11.3 101 327-439 3-111 (228)
75 cd01087 Prolidase Prolidase. E 90.6 2.1 4.5E-05 47.0 11.4 95 327-438 3-97 (243)
76 cd01092 APP-like Similar to Pr 90.6 1.6 3.6E-05 46.2 10.2 98 327-440 3-100 (208)
77 PF04147 Nop14: Nop14-like fam 90.4 0.2 4.3E-06 64.8 3.4 15 798-812 211-225 (840)
78 PRK12897 methionine aminopepti 90.4 2.2 4.8E-05 47.1 11.3 98 327-439 12-113 (248)
79 KOG2038 CAATT-binding transcri 90.2 0.17 3.7E-06 62.2 2.4 13 946-958 834-846 (988)
80 COG5406 Nucleosome binding fac 89.2 0.21 4.5E-06 60.0 2.1 69 223-307 313-385 (1001)
81 cd01066 APP_MetAP A family inc 87.5 3.3 7.2E-05 43.2 9.8 97 327-440 3-99 (207)
82 PF02724 CDC45: CDC45-like pro 86.4 0.19 4E-06 62.9 -0.5 21 886-907 74-94 (622)
83 PTZ00007 (NAP-L) nucleosome as 85.0 4.1 8.8E-05 47.2 9.4 94 786-894 54-152 (337)
84 KOG0943 Predicted ubiquitin-pr 85.0 0.64 1.4E-05 59.2 3.0 29 189-217 585-615 (3015)
85 PF06524 NOA36: NOA36 protein; 84.9 1 2.2E-05 49.2 4.2 13 847-859 208-220 (314)
86 PF05285 SDA1: SDA1; InterPro 84.0 0.89 1.9E-05 52.5 3.6 17 902-920 65-81 (324)
87 KOG0943 Predicted ubiquitin-pr 83.9 0.78 1.7E-05 58.5 3.1 38 843-880 1555-1593(3015)
88 PF13104 DUF3956: Protein of u 83.5 1.3 2.8E-05 34.7 3.0 27 852-878 2-28 (45)
89 PRK12318 methionine aminopepti 83.4 8.4 0.00018 43.9 11.1 101 326-439 50-154 (291)
90 PF09026 CENP-B_dimeris: Centr 82.5 0.43 9.4E-06 44.5 0.2 8 1016-1023 40-47 (101)
91 PRK07281 methionine aminopepti 81.9 11 0.00024 42.8 11.3 83 327-413 12-101 (286)
92 cd01085 APP X-Prolyl Aminopept 81.3 8.2 0.00018 42.2 9.6 98 327-438 5-106 (224)
93 PRK09795 aminopeptidase; Provi 80.9 12 0.00025 43.8 11.4 96 327-439 135-231 (361)
94 cd01090 Creatinase Creatine am 80.3 14 0.00031 40.3 11.1 99 327-439 3-105 (228)
95 PF05764 YL1: YL1 nuclear prot 80.3 0.85 1.8E-05 50.4 1.6 7 972-978 41-47 (240)
96 PF02724 CDC45: CDC45-like pro 79.6 0.68 1.5E-05 58.0 0.6 19 901-919 29-47 (622)
97 KOG2775 Metallopeptidase [Gene 78.9 7.4 0.00016 43.7 8.1 83 326-414 86-174 (397)
98 KOG2776 Metallopeptidase [Gene 78.7 7.8 0.00017 44.6 8.4 101 329-441 25-133 (398)
99 PRK10879 proline aminopeptidas 75.7 20 0.00043 43.3 11.4 95 327-438 181-276 (438)
100 PRK14576 putative endopeptidas 73.5 23 0.00049 42.3 11.1 96 327-439 185-280 (405)
101 PHA02664 hypothetical protein; 71.8 5.4 0.00012 44.7 4.8 28 574-601 179-214 (534)
102 PF03115 Astro_capsid: Astrovi 70.9 1.3 2.9E-05 56.1 0.0 8 300-307 244-251 (787)
103 PRK15173 peptidase; Provisiona 70.9 36 0.00078 39.3 11.6 96 327-439 103-198 (323)
104 COG5165 POB3 Nucleosome-bindin 70.4 3.7 8E-05 46.9 3.2 133 788-957 300-441 (508)
105 KOG2773 Apoptosis antagonizing 68.3 3.3 7.1E-05 48.8 2.3 11 1017-1027 139-149 (483)
106 COG0006 PepP Xaa-Pro aminopept 67.8 25 0.00054 41.4 9.7 98 326-439 161-258 (384)
107 COG5129 MAK16 Nuclear protein 67.6 2.7 5.8E-05 44.9 1.4 40 836-876 32-71 (303)
108 PRK14575 putative peptidase; P 67.2 38 0.00082 40.4 11.1 96 327-439 186-281 (406)
109 PHA02664 hypothetical protein; 67.1 4.4 9.6E-05 45.4 2.9 18 427-444 208-226 (534)
110 KOG0127 Nucleolar protein fibr 65.9 4.2 9.1E-05 48.8 2.6 14 829-842 114-127 (678)
111 KOG0127 Nucleolar protein fibr 64.8 4.1 8.9E-05 48.9 2.3 16 726-741 97-112 (678)
112 PF08553 VID27: VID27 cytoplas 64.5 6.4 0.00014 50.4 4.1 31 909-939 337-367 (794)
113 PF03344 Daxx: Daxx Family; I 64.1 2.2 4.9E-05 53.9 0.0 22 581-604 251-272 (713)
114 PF11705 RNA_pol_3_Rpc31: DNA- 61.8 8.9 0.00019 42.2 4.1 11 803-813 56-66 (233)
115 KOG2141 Protein involved in hi 61.2 5.8 0.00013 49.3 2.7 9 771-779 108-116 (822)
116 PF09073 BUD22: BUD22; InterP 60.1 5.7 0.00012 47.8 2.5 12 861-872 81-92 (432)
117 PF04050 Upf2: Up-frameshift s 60.0 3.3 7.2E-05 43.3 0.4 7 1020-1026 63-69 (170)
118 PF08567 TFIIH_BTF_p62_N: TFII 60.0 21 0.00045 32.8 5.5 62 696-760 9-74 (79)
119 KOG2393 Transcription initiati 59.7 15 0.00033 44.3 5.8 34 909-949 175-209 (555)
120 KOG1980 Uncharacterized conser 58.2 6.3 0.00014 48.3 2.3 23 498-520 48-70 (754)
121 KOG1834 Calsyntenin [Extracell 57.3 5.4 0.00012 48.7 1.6 23 930-952 869-891 (952)
122 KOG0699 Serine/threonine prote 57.2 7.2 0.00016 44.7 2.4 20 572-591 18-37 (542)
123 KOG0262 RNA polymerase I, larg 56.9 9.9 0.00021 49.8 3.8 31 882-912 1237-1272(1640)
124 KOG2051 Nonsense-mediated mRNA 56.8 15 0.00033 47.6 5.3 44 874-918 806-852 (1128)
125 KOG1991 Nuclear transport rece 55.5 7.5 0.00016 49.9 2.4 21 875-895 809-829 (1010)
126 KOG2141 Protein involved in hi 55.2 6.2 0.00013 49.0 1.6 6 913-918 191-196 (822)
127 PF03115 Astro_capsid: Astrovi 52.8 4.6 9.9E-05 51.5 0.0 13 269-281 121-133 (787)
128 COG5593 Nucleic-acid-binding p 52.4 5.8 0.00013 47.5 0.7 19 637-655 495-513 (821)
129 PF04889 Cwf_Cwc_15: Cwf15/Cwc 48.0 9.5 0.00021 42.3 1.6 7 1018-1024 151-157 (244)
130 PTZ00415 transmission-blocking 47.9 14 0.00031 49.8 3.2 11 882-892 123-133 (2849)
131 KOG0262 RNA polymerase I, larg 47.5 19 0.00041 47.4 4.1 28 537-564 879-907 (1640)
132 KOG1834 Calsyntenin [Extracell 46.4 13 0.00028 45.7 2.4 10 624-633 508-517 (952)
133 KOG1991 Nuclear transport rece 44.9 14 0.0003 47.7 2.4 14 69-82 60-73 (1010)
134 PF06213 CobT: Cobalamin biosy 44.3 24 0.00052 40.0 4.1 10 910-919 167-176 (282)
135 KOG3241 Uncharacterized conser 42.9 16 0.00035 38.0 2.1 6 706-711 16-21 (227)
136 PF05470 eIF-3c_N: Eukaryotic 42.0 12 0.00025 46.8 1.2 38 901-947 101-138 (595)
137 COG5137 Histone chaperone invo 40.1 12 0.00027 40.0 0.8 18 748-765 12-29 (279)
138 cd01091 CDC68-like Related to 40.0 1.7E+02 0.0038 32.3 9.9 98 208-323 120-233 (243)
139 KOG0772 Uncharacterized conser 38.6 21 0.00045 43.0 2.4 16 877-892 25-40 (641)
140 PF03066 Nucleoplasmin: Nucleo 37.0 11 0.00025 38.6 0.0 9 851-859 27-35 (149)
141 KOG0772 Uncharacterized conser 35.4 23 0.0005 42.7 2.1 9 873-881 41-49 (641)
142 PF11705 RNA_pol_3_Rpc31: DNA- 35.3 32 0.00069 37.9 3.1 9 803-811 59-67 (233)
143 PF03985 Paf1: Paf1 ; InterPr 35.1 41 0.00088 40.6 4.3 13 734-746 293-305 (436)
144 KOG3540 Beta amyloid precursor 35.0 30 0.00066 41.3 3.0 8 874-881 138-145 (615)
145 KOG2652 RNA polymerase II tran 34.8 33 0.00071 39.5 3.1 10 644-653 35-44 (348)
146 PF07305 DUF1454: Protein of u 34.6 1.7E+02 0.0037 31.2 8.0 74 325-412 114-187 (200)
147 KOG1354 Serine/threonine prote 34.3 66 0.0014 37.3 5.3 62 541-606 122-193 (433)
148 COG4547 CobT Cobalamin biosynt 33.8 34 0.00074 40.7 3.1 10 746-755 43-52 (620)
149 TIGR02993 ectoine_eutD ectoine 32.8 2.5E+02 0.0053 33.4 10.3 100 208-323 271-373 (391)
150 KOG2051 Nonsense-mediated mRNA 31.1 69 0.0015 42.0 5.4 14 168-181 100-113 (1128)
151 PRK13607 proline dipeptidase; 30.9 2.1E+02 0.0046 34.7 9.4 95 326-437 168-263 (443)
152 KOG2652 RNA polymerase II tran 29.8 41 0.00089 38.7 2.9 15 862-876 202-216 (348)
153 KOG2393 Transcription initiati 29.3 44 0.00096 40.6 3.2 19 727-745 140-158 (555)
154 KOG1980 Uncharacterized conser 29.3 27 0.00058 43.2 1.4 36 643-678 45-80 (754)
155 KOG4364 Chromatin assembly fac 29.2 37 0.0008 42.1 2.5 13 913-925 483-495 (811)
156 PTZ00007 (NAP-L) nucleosome as 27.6 58 0.0013 37.9 3.7 37 727-764 130-167 (337)
157 COG5593 Nucleic-acid-binding p 26.3 61 0.0013 39.3 3.5 11 842-852 610-620 (821)
158 PF03985 Paf1: Paf1 ; InterPr 26.2 64 0.0014 39.0 3.9 8 645-652 158-165 (436)
159 KOG2321 WD40 repeat protein [G 26.2 39 0.00084 41.4 1.9 15 400-414 212-226 (703)
160 PF14470 bPH_3: Bacterial PH d 26.1 2.6E+02 0.0057 25.5 7.3 70 843-918 21-95 (96)
161 PF04006 Mpp10: Mpp10 protein; 25.8 78 0.0017 39.9 4.6 14 1018-1031 190-203 (600)
162 KOG3130 Uncharacterized conser 25.5 45 0.00098 39.0 2.2 20 637-656 91-110 (514)
163 KOG3130 Uncharacterized conser 25.4 41 0.00088 39.4 1.8 9 566-574 46-54 (514)
164 KOG1060 Vesicle coat complex A 24.0 1.7E+02 0.0036 37.6 6.7 137 922-1072 594-742 (968)
165 COG5167 VID27 Protein involved 21.5 84 0.0018 38.2 3.4 50 844-893 245-301 (776)
166 PF05793 TFIIF_alpha: Transcri 20.3 34 0.00074 42.3 0.0 9 697-705 110-118 (527)
No 1
>KOG1189 consensus Global transcriptional regulator, cell division control protein [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-245 Score=2074.90 Aligned_cols=942 Identities=50% Similarity=0.820 Sum_probs=859.5
Q ss_pred EeCCCCCCcccccccccceEeecCCcCCcEEEEEeCCcEEEEEeCCccchHHHHHhh---cccccceEEEEEeCCCCCCC
Q 001468 59 VATPPVSEDLRYLKSSALNVWLVGYEFPETIMVFLKKQIHFLCSQKKASLLEVIKKS---AKEAVGIEVVIHVKGKTDDG 135 (1073)
Q Consensus 59 i~~g~~~~~~~Y~ks~al~~wLtGye~p~tlll~t~~~~~ll~s~kK~~~le~~~~~---~~~~~~vei~~~~kd~~d~~ 135 (1073)
++.|..+++++|+|++|++.||+||++|+|++|++++.++|+|+.+|+.+++.+... ....+.+.++++.+ .+.+
T Consensus 2 v~~G~s~dd~~Y~KssAL~~WLlGYEfpdTilv~~~~~i~iltSkkKa~~l~~~~~~~~~~~~~~~v~llvR~k--~d~n 79 (960)
T KOG1189|consen 2 VVVGVSEDDNPYQKSSALFTWLLGYEFPDTILVLCKDKIYILTSKKKAEFLQKVTNLAQSSEGKPTVNLLVRDK--NDDN 79 (960)
T ss_pred eeecccccccchhHHHHHHHHHhccccCceEEEEecCcEEEEecchhHHHHHhhcccccCcccCcceEEEeccc--Cccc
Confidence 344544678999999999999999999999999999999999999999999886432 22356788888843 3333
Q ss_pred CChHHHHHHHhhhcccCCCCCCCEEEEeCCCCCcHHHHHHHHHHHhhcCceEEeCCcccccccccCCHHHHHHHHHHHHH
Q 001468 136 SGLMDKIFGAVNDQSKSGGQNSPVVGHISREAPEGKLLETWNEKLKKANFALSDVSNGFSDLFAIKDDTELTNIKKAAFL 215 (1073)
Q Consensus 136 ~~~~~~l~~~Lk~~~~~~~~~~~rIGv~~kd~~~g~~~~~l~~~l~~~~~e~vDvs~~l~~lR~VKd~~EI~~iR~Aa~i 215 (1073)
+.+|++|+++|+ .++++||+..++.++|.|+..|...|...++..+|++..|+.+.+||++.||++||+|+++
T Consensus 80 ~~~fdkii~~ik-------~~gk~vGvf~ke~~~G~F~~~W~~~l~~~~fn~vDis~~ls~l~avKDd~Ei~~irksa~~ 152 (960)
T KOG1189|consen 80 KGLFDKIIKAIK-------SAGKKVGVFAKEKFQGEFMESWNKRLEAGGFNKVDISLGLSKLFAVKDDEEIANIRKSAAA 152 (960)
T ss_pred cccHHHHHHHHH-------hcCCeeeeecccccchhHHHHHHHHhhhcCCceeehhhhhhhheeeccHHHHHHHHHHHHH
Confidence 488999999999 3799999999999999999999999988899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcccccCCCCHHHHHHHHHHHHHccchhhhhcccCCCCCCCCCeEEeCCCCCCCCCCcCCCccccc
Q 001468 216 SSSVMKQFVVPKLEKVIDEEKKVSHSSLMDETEKAILEPARIKVKLKAENVDICYPPIFQSGGEFDLKPSASSNDNYLYY 295 (1073)
Q Consensus 216 a~~a~~~~~~~~i~~iid~e~GvtE~eLa~~ie~~l~~~gk~~~~~g~~~~~~~y~piV~SG~n~~l~~h~~~~dr~L~~ 295 (1073)
+..+|.+++.+.+..+||+++.|||+.|+..++.++.+ .++..++++..++|||+||+|||++|+|+|++.++++.|
T Consensus 153 s~~vm~k~~~~~~~~aiD~ekkvthskLsD~~e~~I~~-~k~s~~l~~~~~d~cY~PIiqSGg~ydlk~sa~s~~~~L-- 229 (960)
T KOG1189|consen 153 SSAVMNKYLVDELVEAIDEEKKVTHSKLSDLMESAIED-KKYSPGLDPDLLDMCYPPIIQSGGKYDLKPSAVSDDNHL-- 229 (960)
T ss_pred HHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhc-cccCcccCccccccccChhhhcCCccccccccccccccc--
Confidence 99999999999999999999999999999999999975 366667788888999999999999999999999999999
Q ss_pred CCcceEEEeeceeeCCeEeeeEEEEEecCChHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCccccccC
Q 001468 296 DSTSVIICAVGSRYNSYCSNVARTFLIDANTVQSKAYEVLLKAHEAAISALKSGNKVSAAYKAASTVVEKDAPELAANLT 375 (1073)
Q Consensus 296 G~~dvI~vdlG~~y~GY~sditRT~~VgPs~eq~~~y~~llea~~a~i~~lkPGvt~~dV~~aa~~~l~~~Gp~l~~~~~ 375 (1073)
| +|+|++|+||++||||++|||+|+|+.+|+++|++++.||.++++.||||++.++||.++.+++++.+|+|.+.|+
T Consensus 230 ~---~I~cs~G~RynsYCSNv~RT~Lidpssemq~nY~fLl~aqe~il~~lrpG~ki~dVY~~~l~~v~k~~Pel~~~~~ 306 (960)
T KOG1189|consen 230 H---VILCSLGIRYNSYCSNVSRTYLIDPSSEMQENYEFLLAAQEEILKLLRPGTKIGDVYEKALDYVEKNKPELVPNFT 306 (960)
T ss_pred c---eEEeeccchhhhhhccccceeeecchHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHhcCcchhhhhh
Confidence 4 9999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccccccccCCCcccCCCCceecCCcEEEEeeccccccCCCCCCCCCeeeEEEEEEEEEeCCCc-eecccccccch
Q 001468 376 RNAGTGIGLEFRESGLSLNAKNDRILKAGMVFNVSLGFQNLQTENKNPKTQKFSVLLADTVIVGEKVP-DIVTSKSSKAV 454 (1073)
Q Consensus 376 h~~GHgIGle~~E~p~~l~~~~~~~L~~GMVf~IEpG~~~l~~~~~~~~~~~~gvriEDTVlVte~G~-evLT~~~pk~l 454 (1073)
+++|+||||+|+|+.++|+++|+++|++||||+|..||.+|+++... +.|++.|.|||+|+++++ ++||. +++..
T Consensus 307 k~lG~~iGlEFREssl~inaKnd~~lk~gmvFni~lGf~nl~n~~~~---~~yaL~l~DTvlv~e~~p~~vLT~-~~K~~ 382 (960)
T KOG1189|consen 307 KNLGFGIGLEFRESSLVINAKNDRVLKKGMVFNISLGFSNLTNPESK---NSYALLLSDTVLVGEDPPAEVLTD-SAKAV 382 (960)
T ss_pred hhcccccceeeecccccccccchhhhccCcEEEEeeccccccCcccc---cchhhhccceeeecCCCcchhhcc-cchhh
Confidence 99999999999999999999999999999999999999999886642 349999999999999998 99996 99999
Q ss_pred hhhccccCCchhh-hc-cc--ccc-ccccCCCccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Q 001468 455 KDVAYSFNEDDEE-EE-QP--KVK-AEVKGGEPTLSKATLRSDHQEMSKEELRRQHQAELARQKNEETARRLAGGGSSTA 529 (1073)
Q Consensus 455 ~~I~~~~~d~~~~-~~-~~--~~~-~~~~~~~~~~~~~~~r~~~~~~~~e~~r~~~Q~eL~~~~~~e~~~r~~~~~~~~~ 529 (1073)
.+|+|+|++++++ +. ++ ..+ ++.+.+.. ++..++|++. ++|++|++|||||++|+|+|+++||+++ ++
T Consensus 383 ~dv~~~f~~eeeE~~~~~k~~~~~~~~r~~r~a-~l~~k~R~e~---~~ee~RKehQkeLa~qlnee~~~Rls~~---s~ 455 (960)
T KOG1189|consen 383 KDVSYFFKDEEEEEELEKKDPATKVLGRGTRTA-LLTDKTRNET---SAEEKRKEHQKELADQLNEEALRRLSNQ---SG 455 (960)
T ss_pred cccceeeccchhhhhhhhccccccccCccccch-hccccccccc---cHHHHHHHHHHHHHHHHHHHHHHHHhhc---CC
Confidence 9999999988775 22 11 111 22234444 8999999998 8999999999999999999999999987 45
Q ss_pred CCCCceeeccceeecCCCCCCCCCC-CceEEEeccCCEEEEeeCccccceeeeeeeeeeccccCCCeeEEEEEeecCCCC
Q 001468 530 DNRGSVKTIGDLVAYKNVNDLPPPR-DLMIQVDQKNEAILLPIYGSMVPFHVATVKSVSSQQDTNRSCYIRIIFNVPGTS 608 (1073)
Q Consensus 530 ~~~~~~~~~~~~~sy~~~~~~P~~~-~~~i~vD~~~~~vilPi~G~~vPfHi~tiKn~s~~~e~~~~~~lrinF~~pg~~ 608 (1073)
.++.++|..++++||++++|||+++ +|+||||++++||||||||+||||||+||||+|+++| |+||||||||++||++
T Consensus 456 ~s~~~~ks~k~~vsYk~~s~mP~~i~el~i~VD~k~esvilPI~g~~VPFHistikn~s~~~e-g~~tYLRinF~~pg~~ 534 (960)
T KOG1189|consen 456 DSKDEEKSRKRIVSYKRESQMPREIRELRIYVDKKYESVILPIFGIPVPFHISTIKNASQNVE-GDYTYLRINFNTPGSP 534 (960)
T ss_pred CccchhhhhhccccccchhhcchhhhheEEEEecccceEEEeecCcccceehhhhhccccccc-CceeEEEEEecCCCCC
Confidence 5556668899999999999999999 9999999999999999999999999999999999999 9999999999999999
Q ss_pred CCCCCCCCcCCCCcceEEEEEeeeCCcchHHHHHHHHHHHHHHHhhhHHHHHHhhccccccceeeccCCCCccccccccc
Q 001468 609 FTPHDSNSLKFQGSIYLKEVSLRSKDSRHISEVVQQIKTLRRQVTSRESERAERATLVTQEKLQLASAKFKPLKLFDLWI 688 (1073)
Q Consensus 609 ~~~~~~~~~~~~~~~fikelt~rs~d~~~~~~~~~~I~~l~k~~~~re~e~~e~~~~v~q~~L~~~~~~~~~~~L~~~~~ 688 (1073)
.|+.+..+|++|+|+|||||||||+|++|++++||+||+|||++++||+|+++++++|+||+|++++++++| +|+||||
T Consensus 535 ~g~~e~~~~~~~~a~flkeit~rs~~~~~~s~~f~~ik~l~k~~~~re~e~~eke~~v~qdkL~~~kn~~~p-~L~dlyi 613 (960)
T KOG1189|consen 535 GGKNEELPFENPGAQFLKEITFRSSNGKRSSEAFRQIKELQKRFKSREAERKEKEDLVKQDKLIESKNKSNP-KLKDLYI 613 (960)
T ss_pred CCCCCCCcCCCchhhhhhheeeeecCCcchHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhHHHHhhccCCC-chhheEe
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred cCCCCCCcccccceEEEEecceeeecCCCCceeeeeccccceeeeccCCCccEEEEEEEcccceeeCceecceeeEEEEe
Q 001468 689 RPPFGGRGRKLTGSLEAHTNGFRYSTSRPDERVDVMYGNIKHAFFQPAEREMITLLHFHLHNHIMVGNKKTKDVQFYIEV 768 (1073)
Q Consensus 689 rP~~~g~~kr~~G~le~h~ng~r~~~~~~~~~~dily~nIk~~ffqp~~~e~~v~~h~~L~~pi~~Gkkk~~dvQF~~e~ 768 (1073)
||+|.| ||++|+||||+|||||+| .|+++|||||+||||+|||||++|||+||||||++|||+||||+.|||||+||
T Consensus 614 Rp~i~~--Kr~~G~lEaH~NGfRy~s-~R~~~vdiLfsNIKhafFqpc~~Emi~llHfHLknpIm~GkkK~~dVQFY~Ev 690 (960)
T KOG1189|consen 614 RPNIDT--KRIPGSLEAHENGFRYQS-LRDERVDILFSNIKHAFFQPCEGEMIILLHFHLKNPIMVGKKKTKDVQFYREV 690 (960)
T ss_pred cCCccc--cccccceeeecCceeeee-ccccchhhhhhhhhhhhcCccccceeeEeeehhccceeecccceeeeeeeehh
Confidence 999999 999999999999999999 67999999999999999999999999999999999999999999999999999
Q ss_pred eeeEeecCCCcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcccCCCceeeccCcccceeecccCceeee
Q 001468 769 MDVVQTLGGGKRSAYDPDEVEEEQRERARKNKINMDFQNFVNRVNDLWGQPQFKAFDLEFDQPLRELGFHGVPHKASAFI 848 (1073)
Q Consensus 769 ~~~~~~~~~~r~~~~d~de~~~eq~e~~~~~~ln~~f~~f~~~v~~~~~~~~~~~~~~~f~~p~~~l~f~g~~~~~~~~l 848 (1073)
++++.|++++| ||+|+|||++||+||++|++||.+|+.||.+|.+++ ...++|++|||+|||+|||+|++|+|
T Consensus 691 ~div~dlg~~~-~~~D~del~~EQ~Er~rr~~ln~~FksF~~kv~~~~------~~~~efd~pfr~lGF~GvP~rssv~i 763 (960)
T KOG1189|consen 691 GDIVTDLGKRR-RMGDRDELEQEQEERDRRAKLNMAFKSFAEKVAEAT------ESELEFDVPFRELGFNGVPFRSSVFI 763 (960)
T ss_pred hhHHHhhccCc-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh------ccceeeccchhhcCcCCCCccceeee
Confidence 99977777665 479999999999999999999999999999997743 35699999999999999999999999
Q ss_pred eeCcccceeeccCCcEEEEcCceeEEEEEeecCCCcceeEEEEEecCCCCeEEEecccCCChhhHHHHhhcCCceeeecc
Q 001468 849 VPTSSCLVELIETPFVVITLSEIEIVNLERVGLGQKNFDMTIVFKDFKRDVLRIDSIPSSSLDGIKEWLDTTDLKYYESR 928 (1073)
Q Consensus 849 ~pt~~clv~l~e~P~~vi~l~eie~v~feRv~~~~k~FD~~~v~kd~~~~~~~i~~I~~~~l~~ik~wl~~~~i~~~e~~ 928 (1073)
+||++|||+|+|||||||||+|||+||||||||++|||||+||||||+++|++|++||+++||.||+||++|||+|+||+
T Consensus 764 ~pTs~cLV~LtE~P~~VvtL~eVEiv~~ERV~f~lKnfDmvfIfKd~~k~v~~i~svp~~sLd~iKEWLdscDI~y~Eg~ 843 (960)
T KOG1189|consen 764 QPTSSCLVNLTEWPFFVVTLEEVEIVNLERVQFGLKNFDMVFIFKDFKKKVTMINSVPMESLDKLKEWLDSCDIKYTEGV 843 (960)
T ss_pred ecchhhhhccccCCceEEeecceeeeeeeeeeeccccceEEEEeccccccceeeeccchhhhhHHHHhhhcccceeeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCChhhhhhhhccCchhhhhcCCcccccCCCCCC--CCCCCCCccCCCCCCCCCCCCCCCCCCCCcccccccCCCcccc
Q 001468 929 LNLNWRPILKTITDDPEKFIEDGGWEFLNMEASDS--ESENSQDSDQGYEPSDVQSDSVSDDENDDSESLVESEDDEEED 1006 (1073)
Q Consensus 929 ~nlnW~~i~k~i~~d~~~f~~~ggw~fl~~~~~~~--~~~~~e~~d~~~e~~~~e~~~~~~~~~~~~d~~~~~~~~~~e~ 1006 (1073)
+||||++|||||++||.+||++|||+||+.+++|+ +.++++++++.|+++|+|.++++++|+++++ ++++|++++
T Consensus 844 ~sLNW~~ImKTI~dDP~~Ffe~GgW~fL~~~~sdsee~~~ese~e~~~y~psd~~v~~eS~ed~e~sE---~s~~de~~d 920 (960)
T KOG1189|consen 844 QSLNWTKIMKTITDDPIAFFEDGGWSFLNVESSDSEEGGDESEEEDSAYEPSDDDVSDESDEDEEESE---ESEEDEEDD 920 (960)
T ss_pred ccccHHHHhhhhccCHHHHHhcCCeeeecCCCCcccccccccccccccCCccccCccccccccccccc---ccccccccc
Confidence 99999999999999999999999999999987543 3345566789999998877666554443333 222222233
Q ss_pred CcCCcccccCCChHHHHHHHhHHhhhcCCCCCchh
Q 001468 1007 SEEDSEEDKGKTWEELEREASYADREKGADSDSED 1041 (1073)
Q Consensus 1007 ~~~~~~~~~g~~wdele~~a~~~d~~~~~~~~~~~ 1041 (1073)
++.+||||+|+||||||+||+++|++++.+++...
T Consensus 921 e~~~sdEE~gkdwdele~ea~~~dr~~~~~~e~~s 955 (960)
T KOG1189|consen 921 EDLESDEESGKDWDELEREARNADREHGAEEERES 955 (960)
T ss_pred ccccchhhhccchhhhHHHHhhcchhhchhhhcch
Confidence 44455789999999999999999998876554443
No 2
>COG5406 Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]
Probab=100.00 E-value=6.4e-215 Score=1783.79 Aligned_cols=975 Identities=34% Similarity=0.592 Sum_probs=869.9
Q ss_pred cccccCCHHHHHHHHHHHHHHHhccCCCCCCCccEEEEeCCCCCCcccccccccceEeecCCcCCcEEEEEeCCcEEEEE
Q 001468 22 ANTYAINLDNFSKRLKMLYSHWTEHNSDLWGDSNALAVATPPVSEDLRYLKSSALNVWLVGYEFPETIMVFLKKQIHFLC 101 (1073)
Q Consensus 22 M~~~~i~~~~f~~Rl~rL~~~m~~~~~~~~~glDaLli~~g~~~~~~~Y~ks~al~~wLtGye~p~tlll~t~~~~~ll~ 101 (1073)
|+++.|+...|++|+..|+..|.+.. .++|+||++.|..++.++|+|+++++.||+||+||.|++++.+..+++++
T Consensus 1 M~e~~ide~~F~kR~~~l~~~~ne~d----G~p~sllv~lG~s~d~npyqk~taLh~wLLgYEFP~Tli~l~~~~~~I~t 76 (1001)
T COG5406 1 MPEIRIDEERFEKRSRDLRKHLNEED----GGPDSLLVMLGKSQDVNPYQKNTALHIWLLGYEFPETLIILDDVCTAITT 76 (1001)
T ss_pred CCcccccHHHHHHHHHHHHHhhhhcc----CCCceEEEEeccccccChhhhhhHHHHHHHhccCcceEEEEecceEEEEe
Confidence 78899999999999999999997643 68999999999977889999999999999999999999999999999999
Q ss_pred eCCccchHHH-HHhhcccccceEEEEEeCCCCCCCCChHHHHHHHhhhcccCCCCCCCEEEEeCCCCCcHHHHHHHHHHH
Q 001468 102 SQKKASLLEV-IKKSAKEAVGIEVVIHVKGKTDDGSGLMDKIFGAVNDQSKSGGQNSPVVGHISREAPEGKLLETWNEKL 180 (1073)
Q Consensus 102 s~kK~~~le~-~~~~~~~~~~vei~~~~kd~~d~~~~~~~~l~~~Lk~~~~~~~~~~~rIGv~~kd~~~g~~~~~l~~~l 180 (1073)
+.+||.+++. +..........+++-++|++..+. ..|+.++..|+ ..+++||+..+|.+.|+|+.+|...+
T Consensus 77 s~~kA~~lqk~l~~~~~~~v~~n~~~r~k~~eenk-KlF~~~i~~i~-------s~~k~VG~f~kD~~qgkfi~ew~~i~ 148 (1001)
T COG5406 77 SKKKAILLQKGLAETSLNIVVRNKDNRTKNMEENK-KLFKGSIYVIG-------SENKIVGDFCKDVLQGKFINEWDSIF 148 (1001)
T ss_pred chhhHHHHHhhhccCcchhhhhhhhhcccCHHHHH-HHHhhhheecc-------cCCcccCccchhhhhcccccccchhh
Confidence 9988887766 332211123344555555555544 77788888887 46899999999999999999999888
Q ss_pred hh--cCceEEeCCcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCHHHHHHHHHHHHHccchhh
Q 001468 181 KK--ANFALSDVSNGFSDLFAIKDDTELTNIKKAAFLSSSVMKQFVVPKLEKVIDEEKKVSHSSLMDETEKAILEPARIK 258 (1073)
Q Consensus 181 ~~--~~~e~vDvs~~l~~lR~VKd~~EI~~iR~Aa~ia~~a~~~~~~~~i~~iid~e~GvtE~eLa~~ie~~l~~~gk~~ 258 (1073)
.. +.+..+|++..|+.+..+|+.+||+.+|.+++.++..|. ++++.|...+|.+..+||..|...++..+.+. ++.
T Consensus 149 e~vk~efN~~DvslgLsk~~~~KD~~E~an~~~ss~~s~~~M~-~~~~em~~~~D~~~kit~~KlsD~mes~iddv-~f~ 226 (1001)
T COG5406 149 EPVKSEFNASDVSLGLSKMFLTKDAEEIANCRASSAASSVLMR-YFVKEMEMLWDGAFKITHGKLSDLMESLIDDV-EFF 226 (1001)
T ss_pred hhhhhhcchhhhhhhhhHHhccccHHHHhhccccchHHHHHHH-HHHHHHHHHHhhhhhhccchHHHHhhhhcchh-hhh
Confidence 64 367889999999999999999999999999999999999 99999999999999999999999999977543 221
Q ss_pred -------hhcccCCCCCCCCCeEEeCCCCCCCCCCcCCCcccccCCcceEEEeeceeeCCeEeeeEEEEEecCChHHHHH
Q 001468 259 -------VKLKAENVDICYPPIFQSGGEFDLKPSASSNDNYLYYDSTSVIICAVGSRYNSYCSNVARTFLIDANTVQSKA 331 (1073)
Q Consensus 259 -------~~~g~~~~~~~y~piV~SG~n~~l~~h~~~~dr~L~~G~~dvI~vdlG~~y~GY~sditRT~~VgPs~eq~~~ 331 (1073)
.+++.+..+|||.||||||+.++++|++.+.++.|.. |+|++++|.||+||||+++||++++|+.+|+++
T Consensus 227 q~~s~~l~~~~~d~lew~ytpiiqsg~~~Dl~psa~s~~~~l~g---d~vl~s~GiRYn~YCSn~~RT~l~dp~~e~~~N 303 (1001)
T COG5406 227 QTKSLKLGDIDLDQLEWCYTPIIQSGGSIDLTPSAFSFPMELTG---DVVLLSIGIRYNGYCSNMSRTILTDPDSEQQKN 303 (1001)
T ss_pred hhcCccccccchhhhhhhcchhhccCceeecccccccCchhhcC---ceEEEEeeeeeccccccccceEEeCCchHhhhh
Confidence 2345677899999999999999999999999999875 899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCccccccCCccccccccccccCCCcccCCCCceecCCcEEEEee
Q 001468 332 YEVLLKAHEAAISALKSGNKVSAAYKAASTVVEKDAPELAANLTRNAGTGIGLEFRESGLSLNAKNDRILKAGMVFNVSL 411 (1073)
Q Consensus 332 y~~llea~~a~i~~lkPGvt~~dV~~aa~~~l~~~Gp~l~~~~~h~~GHgIGle~~E~p~~l~~~~~~~L~~GMVf~IEp 411 (1073)
|++++.+|..++..+|||++.++||..+..++.+.||++++.|..++|-+|||+++++.+.++.++.++|+.||+|+|..
T Consensus 304 y~fl~~lQk~i~~~~rpG~~~g~iY~~~~~yi~~~~pel~pnF~~nvG~~igiefR~s~~~~nvkn~r~lq~g~~fnis~ 383 (1001)
T COG5406 304 YEFLYMLQKYILGLVRPGTDSGIIYSEAEKYISSNGPELGPNFIYNVGLMIGIEFRSSQKPFNVKNGRVLQAGCIFNISL 383 (1001)
T ss_pred HHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHhcCCccCchHhhhhhhhccccccccccceeccCCceeccccEEEEee
Confidence 99999999999999999999999999999999999999999999999999999999999888999999999999999999
Q ss_pred ccccccCCCCCCCCCeeeEEEEEEEEEeCCCceecccccccchhhhccccCCchhh-h-cccccc-ccc-cCCCcccccc
Q 001468 412 GFQNLQTENKNPKTQKFSVLLADTVIVGEKVPDIVTSKSSKAVKDVAYSFNEDDEE-E-EQPKVK-AEV-KGGEPTLSKA 487 (1073)
Q Consensus 412 G~~~l~~~~~~~~~~~~gvriEDTVlVte~G~evLT~~~pk~l~~I~~~~~d~~~~-~-~~~~~~-~~~-~~~~~~~~~~ 487 (1073)
||.++.+|... ..|++.+.||+.|+-+.|.+||. +|+.-.+|+|+|.++++. + ..++.+ +.. .++.. +.++
T Consensus 384 gf~nl~~~~~~---Nnyal~l~dt~qi~ls~p~~~t~-~~kaq~~isf~fgedd~~~e~~~~~~k~P~~~d~~~~-~~r~ 458 (1001)
T COG5406 384 GFGNLINPHPK---NNYALLLIDTEQISLSNPIVFTD-SPKAQGDISFLFGEDDETPEYLTLQDKAPDFLDKTIS-SHRS 458 (1001)
T ss_pred cccccCCCCcc---cchhhhhccceEeecCCceeccc-CcccccceeEEecCCCCChhhcccccCCCCccccchh-hhhh
Confidence 99999887642 45999999999999888999996 999999999999966553 1 111111 122 23333 6899
Q ss_pred ccccccccc--cHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCceeeccceeecCCCCCCCCCC-CceEEEeccC
Q 001468 488 TLRSDHQEM--SKEELRRQHQAELARQKNEETARRLAGGGSSTADNRGSVKTIGDLVAYKNVNDLPPPR-DLMIQVDQKN 564 (1073)
Q Consensus 488 ~~r~~~~~~--~~e~~r~~~Q~eL~~~~~~e~~~r~~~~~~~~~~~~~~~~~~~~~~sy~~~~~~P~~~-~~~i~vD~~~ 564 (1073)
|+|.++++. +++++|.||||+|++++++|++.||.++ +..|....+++.+++++||++++|+|+.+ +|+|+||.+.
T Consensus 459 k~R~etr~~~~~a~k~r~EhQK~L~~k~~~egL~rf~~a-~~~gpds~~~~~~kr~esY~rdSqlP~~i~elRi~VD~~~ 537 (1001)
T COG5406 459 KFRDETREHELNARKKRVEHQKELLDKIIEEGLERFRNA-SDAGPDSIEEKSEKRIESYSRDSQLPRQIGELRIIVDFAR 537 (1001)
T ss_pred hhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhh-cccCCccccchhhhhhccccccccccccccceEEEEEecc
Confidence 999998753 4688888999999999999999999775 11222233458899999999999999999 9999999999
Q ss_pred CEEEEeeCccccceeeeeeeeeeccccCCCeeEEEEEeecCCCCCCCCCCCCcCCCCcceEEEEEeeeCCcchHHHHHHH
Q 001468 565 EAILLPIYGSMVPFHVATVKSVSSQQDTNRSCYIRIIFNVPGTSFTPHDSNSLKFQGSIYLKEVSLRSKDSRHISEVVQQ 644 (1073)
Q Consensus 565 ~~vilPi~G~~vPfHi~tiKn~s~~~e~~~~~~lrinF~~pg~~~~~~~~~~~~~~~~~fikelt~rs~d~~~~~~~~~~ 644 (1073)
++|||||+|+|||||||+|||+|+++| |+|+||||||++||++.|+.+..|++++++.|||++|+||.++.+|.++|++
T Consensus 538 qsIilPI~grpVPFHiss~Knasknde-g~~~yLRlNF~spg~~ggk~eElp~E~~~~qF~rsit~rS~~g~rms~~fk~ 616 (1001)
T COG5406 538 QSIILPIGGRPVPFHISSIKNASKNDE-GNFVYLRLNFKSPGKGGGKTEELPCEQRGEQFLRSITSRSIRGNRMSDLFKE 616 (1001)
T ss_pred ceEEEeecCcccceeehhhccccccCC-CceEEEEEeccCCCCCCCccccCcccccchhhhhheeeeeccCccHHHHHHH
Confidence 999999999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhHHHHHHhhccccccceeeccCCCCccccccccccCCCCCCcccccceEEEEecceeeecCCCCc-eeee
Q 001468 645 IKTLRRQVTSRESERAERATLVTQEKLQLASAKFKPLKLFDLWIRPPFGGRGRKLTGSLEAHTNGFRYSTSRPDE-RVDV 723 (1073)
Q Consensus 645 I~~l~k~~~~re~e~~e~~~~v~q~~L~~~~~~~~~~~L~~~~~rP~~~g~~kr~~G~le~h~ng~r~~~~~~~~-~~di 723 (1073)
|++|||.+++||+||++-|++++|+||++++.+++. ++.+++|||+++| ||++|+||+|+|||||+|+.|++ +|||
T Consensus 617 I~dlKK~atkrEterke~adv~eqdKlie~k~~rt~-~~~~~~vRp~~d~--KR~pg~~eiHeNGiRfqsplrsds~idi 693 (1001)
T COG5406 617 INDLKKGATKRETERKEDADVLEQDKLIERKLSRTD-VYMKTDVRPGSDG--KRKPGNLEIHENGIRFQSPLRSDSHIDI 693 (1001)
T ss_pred HHHHHhhhhhhhhhhHHHHHHHhhhhhhhccccccc-hhhhcccccCCCc--CccCccEEEecCceeecCCcccCceeEE
Confidence 999999999999999999999999999999999988 9999999999999 99999999999999999996665 8999
Q ss_pred eccccceeeeccCCCccEEEEEEEcccceeeCceecceeeEEEEeeeeEeecCCCcCC---CCChhHHHHHHHHHHHHHH
Q 001468 724 MYGNIKHAFFQPAEREMITLLHFHLHNHIMVGNKKTKDVQFYIEVMDVVQTLGGGKRS---AYDPDEVEEEQRERARKNK 800 (1073)
Q Consensus 724 ly~nIk~~ffqp~~~e~~v~~h~~L~~pi~~Gkkk~~dvQF~~e~~~~~~~~~~~r~~---~~d~de~~~eq~e~~~~~~ 800 (1073)
||+||||+|||||.+|+||+|||||++|||+||+|++|||||||++++.+|.+|+|+| |+|+||+++||+||++|+.
T Consensus 694 LFSNikhlfFq~c~gEliviiH~HLk~PIl~GkrKvqdVQFYREasd~~vdeTg~~~rk~~ygdedElEqEqeerrrraa 773 (1001)
T COG5406 694 LFSNIKHLFFQECNGELIVIIHFHLKSPILTGKRKVQDVQFYREASDTMVDETGKRGRKEHYGDEDELEQEQEERRRRAA 773 (1001)
T ss_pred eeccchhheeccCCceEEEEEEEeecCceecCCceeeeeeeeecccccchhhhccccchhhccchHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998877 7899999999999999999
Q ss_pred HHHHHHHHHHHHhhccCCCcccCCCceeeccCcccceeecccCceeeeeeCcccceeeccCCcEEEEcCceeEEEEEeec
Q 001468 801 INMDFQNFVNRVNDLWGQPQFKAFDLEFDQPLRELGFHGVPHKASAFIVPTSSCLVELIETPFVVITLSEIEIVNLERVG 880 (1073)
Q Consensus 801 ln~~f~~f~~~v~~~~~~~~~~~~~~~f~~p~~~l~f~g~~~~~~~~l~pt~~clv~l~e~P~~vi~l~eie~v~feRv~ 880 (1073)
|+++|+.|+..|++ ++ +..++|++|||+|||+|||+|++|+|+||++|||+|+|.|||||||+|||||||||||
T Consensus 774 ld~eFksFa~~Iae----as--~gri~~~~~fr~lgF~GVPfRs~V~~~pTtdCLVqL~e~Pf~VitLeevEi~~lERVq 847 (1001)
T COG5406 774 LDQEFKSFASSIAE----AS--EGRIEFKVQFRKLGFYGVPFRSSVMIKPTTDCLVQLDEAPFFVITLEEVEIVNLERVQ 847 (1001)
T ss_pred HHHHHHHHHHHHHH----hh--cCceEEeeechhccccCCccccceeeecchhheeeccCCceEEEEecceeEEeeeeEE
Confidence 99999999999977 44 3669999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceeEEEEEecCCCCeEEEecccCCChhhHHHHhhcCCceeeecccCCChhhhhhhhccCchhhhhcCCcccccCCC
Q 001468 881 LGQKNFDMTIVFKDFKRDVLRIDSIPSSSLDGIKEWLDTTDLKYYESRLNLNWRPILKTITDDPEKFIEDGGWEFLNMEA 960 (1073)
Q Consensus 881 ~~~k~FD~~~v~kd~~~~~~~i~~I~~~~l~~ik~wl~~~~i~~~e~~~nlnW~~i~k~i~~d~~~f~~~ggw~fl~~~~ 960 (1073)
||+||||||||||||.++++||++||+++|+.||+||+||||+|+|++.||||++|||+|++||.+||++|||+||..++
T Consensus 848 fglKnfD~vFi~~df~rp~vhIntvpvesld~lKewLds~di~f~e~~~nlnW~timksi~~DPi~FfedGgW~fL~~gs 927 (1001)
T COG5406 848 FGLKNFDVVFILRDFYRPLVHINTVPVESLDKLKEWLDSNDILFMETSANLNWNTIMKSIMKDPISFFEDGGWSFLMVGS 927 (1001)
T ss_pred eecccceEEEEeccccCCcceeccccHHHHHHHHHHhhhcCceeEeccccccHHHHHHHHhcCcHHHhhcCcceeeecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCcccccccCCCccccCcCCcccccCCChHHHHHHHhHHhhh
Q 001468 961 SDSESENSQDSDQGYEPSDVQSDSVSDDENDDSESLVESEDDEEEDSEEDSEEDKGKTWEELEREASYADRE 1032 (1073)
Q Consensus 961 ~~~~~~~~e~~d~~~e~~~~e~~~~~~~~~~~~d~~~~~~~~~~e~~~~~~~~~~g~~wdele~~a~~~d~~ 1032 (1073)
||+. ++++++-|+|+.|++++.++.++||+.+++++|-++|+ ++ ++.+|||+|+||||||+||+.+++-
T Consensus 928 ddE~-deseeEvSEyeaS~dd~sdet~edees~e~seD~sede-Se-~~~~DeE~gEDwdele~kaa~~~rp 996 (1001)
T COG5406 928 DDES-DESEEEVSEYEASSDDESDETDEDEESDESSEDLSEDE-SE-NDSSDEEDGEDWDELESKAAYDSRP 996 (1001)
T ss_pred cccc-cccchhhhhhhccCCCcccccccccccccccccccccc-cc-ccccccccccchhhHhhhhhhhccC
Confidence 6544 55666678898887776555444443333433332222 22 2234678999999999999888763
No 3
>PF08644 SPT16: FACT complex subunit (SPT16/CDC68); InterPro: IPR013953 Proteins in this entry are subunits the FACT complex; the FACT complex is a stable heterodimer in Saccharomyces cerevisiae (Baker's yeast) comprising Spt16p and Pob3p. The complex plays a role in transcription initiation and promotes binding of TATA-binding protein (TBP) to a TATA box in chromatin []; it also facilitates RNA Polymerase II transcription elongation through nucleosomes by destabilising and then reassembling nucleosome structure [, ]. The proteins in this entry are non-peptidase homologues belonging to MEROPS peptidase family M24 (clan MG).
Probab=100.00 E-value=1.8e-58 Score=459.77 Aligned_cols=152 Identities=52% Similarity=0.880 Sum_probs=149.3
Q ss_pred EEEeccCCEEEEeeCccccceeeeeeeeeeccccCCCeeEEEEEeecCCCCCCCCCCCCcCCCCcceEEEEEeeeCCcch
Q 001468 558 IQVDQKNEAILLPIYGSMVPFHVATVKSVSSQQDTNRSCYIRIIFNVPGTSFTPHDSNSLKFQGSIYLKEVSLRSKDSRH 637 (1073)
Q Consensus 558 i~vD~~~~~vilPi~G~~vPfHi~tiKn~s~~~e~~~~~~lrinF~~pg~~~~~~~~~~~~~~~~~fikelt~rs~d~~~ 637 (1073)
||||++++||||||||+|||||||||||||+++| |+|+||||||++||++.|++++.|+.+|+++|||||||||+|.+|
T Consensus 1 I~VD~k~esvllPI~G~~VPFHIstIKnvs~~~e-g~~~ylRINF~~Pg~~~~k~~~~~~~~~~~~fiKeltfRs~d~~~ 79 (152)
T PF08644_consen 1 IYVDKKNESVLLPINGRPVPFHISTIKNVSKSDE-GDYTYLRINFNTPGSTTGKKDDNPFEDPDAIFIKELTFRSKDSRH 79 (152)
T ss_pred CeEeccCCEEEEEeCCcccceEeeeEEcceeccC-CCeEEEEEEEeCCCcccccccccccCCCCCeEEEEEEEEeCCchH
Confidence 7999999999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHhhccccccceeeccCCCCccccccccccCCCCCCcccccceEEEEecceee
Q 001468 638 ISEVVQQIKTLRRQVTSRESERAERATLVTQEKLQLASAKFKPLKLFDLWIRPPFGGRGRKLTGSLEAHTNGFRY 712 (1073)
Q Consensus 638 ~~~~~~~I~~l~k~~~~re~e~~e~~~~v~q~~L~~~~~~~~~~~L~~~~~rP~~~g~~kr~~G~le~h~ng~r~ 712 (1073)
|++++++||+|||++++||+|++|++++|+||+|++++++++| +|+||||||++.|+ ||++|+||||+|||||
T Consensus 80 ~~~v~~~Ikel~k~~~~re~E~~e~~~~v~QekL~~~~~~~~~-~L~dl~iRP~~~g~-kr~~G~LEaH~NGfRy 152 (152)
T PF08644_consen 80 LQEVFRQIKELQKRVKQREQERREKADLVEQEKLILSKNRRPP-RLKDLYIRPAIGGR-KRVPGTLEAHTNGFRY 152 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccccceEEccCCCCC-ccCCceECCCCccc-cccCceEEEecCcccC
Confidence 9999999999999999999999999999999999999988988 99999999999887 9999999999999998
No 4
>PRK09795 aminopeptidase; Provisional
Probab=100.00 E-value=2.8e-55 Score=505.10 Aligned_cols=350 Identities=20% Similarity=0.297 Sum_probs=298.2
Q ss_pred HHHHHHHHHHhccCCCCCCCccEEEEeCCCCCCcccccccccceEeecCCcCCcEEEEEeCCcEEEEEeCCccchHHHHH
Q 001468 34 KRLKMLYSHWTEHNSDLWGDSNALAVATPPVSEDLRYLKSSALNVWLVGYEFPETIMVFLKKQIHFLCSQKKASLLEVIK 113 (1073)
Q Consensus 34 ~Rl~rL~~~m~~~~~~~~~glDaLli~~g~~~~~~~Y~ks~al~~wLtGye~p~tlll~t~~~~~ll~s~kK~~~le~~~ 113 (1073)
.|+++|++.|++ .++||++|+.+. | ++|||||....+++|++.++.+|+++. +|.+++.
T Consensus 2 ~Rl~~l~~~m~~------~~lDa~lI~~~~-n-----------~~YLTGf~g~~g~llIt~~~~~l~td~---ry~~qa~ 60 (361)
T PRK09795 2 TLLASLRDWLKA------QQLDAVLLSSRQ-N-----------KQPHLGISTGSGYVVISRESAHILVDS---RYYADVE 60 (361)
T ss_pred cHHHHHHHHHHH------CCCCEEEECCcc-c-----------cccccCccCCCeEEEEECCCCEEEcCc---chHHHHH
Confidence 589999999999 899999999987 4 789999998777788888887888875 5777765
Q ss_pred hhcccccceEEEEEeCCCCCCCCChHHHHHHHhhhcccCCCCCCCEEEEeCCCCCcHHHHHHHHHHHhhcCceEEeCCcc
Q 001468 114 KSAKEAVGIEVVIHVKGKTDDGSGLMDKIFGAVNDQSKSGGQNSPVVGHISREAPEGKLLETWNEKLKKANFALSDVSNG 193 (1073)
Q Consensus 114 ~~~~~~~~vei~~~~kd~~d~~~~~~~~l~~~Lk~~~~~~~~~~~rIGv~~kd~~~g~~~~~l~~~l~~~~~e~vDvs~~ 193 (1073)
.. ..+.+++.+. +.. ...+.+.+.|+. ...++||++.. .++...+..|.+.+ ...++|++
T Consensus 61 ~~---~~~~~v~~~~----~~~-~~~~~L~~~L~~------~~~~~Ig~e~~-~~s~~~~~~L~~~l---~~~~~~~~-- 120 (361)
T PRK09795 61 AR---AQGYQLHLLD----ATN-TLTTIVNQIIAD------EQLQTLGFEGQ-QVSWETAHRWQSEL---NAKLVSAT-- 120 (361)
T ss_pred hh---CCCceEEEec----CCc-cHHHHHHHHHHh------cCCcEEEEecC-cccHHHHHHHHHhc---Cccccccc--
Confidence 44 2345555442 111 334566677763 23478999965 56777777776654 24556554
Q ss_pred cccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCHHHHHHHHHHHHHccchhhhhcccCCCCCCCCCe
Q 001468 194 FSDLFAIKDDTELTNIKKAAFLSSSVMKQFVVPKLEKVIDEEKKVSHSSLMDETEKAILEPARIKVKLKAENVDICYPPI 273 (1073)
Q Consensus 194 l~~lR~VKd~~EI~~iR~Aa~ia~~a~~~~~~~~i~~iid~e~GvtE~eLa~~ie~~l~~~gk~~~~~g~~~~~~~y~pi 273 (1073)
+..+|+|||++||++||+|+++++.++. .+.+.++ +|+||.+|++.++..+.. .|+. ..+|++|
T Consensus 121 ~~~lR~iKs~~Ei~~~r~a~~i~~~~~~-~~~~~i~------~G~tE~e~~~~~~~~~~~-------~G~~--~~~f~~i 184 (361)
T PRK09795 121 PDVLRQIKTPEEVEKIRLACGIADRGAE-HIRRFIQ------AGMSEREIAAELEWFMRQ-------QGAE--KASFDTI 184 (361)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHH-HHHHhcc------CCCcHHHHHHHHHHHHHH-------CCCC--cCCCCeE
Confidence 8999999999999999999999999999 8888888 599999999999999875 3443 5688999
Q ss_pred EEeCCCCCCCCCCcCCCcccccCCcceEEEeeceeeCCeEeeeEEEEEec-C--Ch---HHHHHHHHHHHHHHHHHHHcC
Q 001468 274 FQSGGEFDLKPSASSNDNYLYYDSTSVIICAVGSRYNSYCSNVARTFLID-A--NT---VQSKAYEVLLKAHEAAISALK 347 (1073)
Q Consensus 274 V~SG~n~~l~~h~~~~dr~L~~G~~dvI~vdlG~~y~GY~sditRT~~Vg-P--s~---eq~~~y~~llea~~a~i~~lk 347 (1073)
|+||.|+++ ||+.|+++.|+.| |+|++|+|++|+|||||++|||++| + ++ +++++|+++++||.++++++|
T Consensus 185 v~sG~~~~~-ph~~~~~~~l~~g--d~v~~d~g~~~~gY~sd~tRt~~~g~~~~~~~~~~~~~~~~~v~~a~~~~~~~~r 261 (361)
T PRK09795 185 VASGWRGAL-PHGKASDKIVAAG--EFVTLDFGALYQGYCSDMTRTLLVNGEGVSAESHPLFNVYQIVLQAQLAAISAIR 261 (361)
T ss_pred EEEeccccc-cCCCCCCceecCC--CEEEEEeccccCCEeecceEEEEeCCcCCchhHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999886 9999999999999 9999999999999999999999996 2 33 378999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcCCccccccCCccccccccccccCCCcccCCCCceecCCcEEEEeeccccccCCCCCCCCCe
Q 001468 348 SGNKVSAAYKAASTVVEKDAPELAANLTRNAGTGIGLEFRESGLSLNAKNDRILKAGMVFNVSLGFQNLQTENKNPKTQK 427 (1073)
Q Consensus 348 PGvt~~dV~~aa~~~l~~~Gp~l~~~~~h~~GHgIGle~~E~p~~l~~~~~~~L~~GMVf~IEpG~~~l~~~~~~~~~~~ 427 (1073)
||++++||++++++++.+.| |..+|.|++|||||+++||.| .++++++.+|++||||+||||+| + ++.
T Consensus 262 pG~~~~~v~~~~~~~~~~~g--~~~~~~h~~GHgiGl~~he~p-~i~~~~~~~l~~gmv~~iEpgiy-~--------~~~ 329 (361)
T PRK09795 262 PGVRCQQVDDAARRVITEAG--YGDYFGHNTGHAIGIEVHEDP-RFSPRDTTTLQPGMLLTVEPGIY-L--------PGQ 329 (361)
T ss_pred CCCcHHHHHHHHHHHHHHcC--CCccCCCCCCccCCccccCCC-CcCCCCCCCcCCCCEEEECCEEE-e--------CCC
Confidence 99999999999999999999 999999999999999999999 58899999999999999999999 5 567
Q ss_pred eeEEEEEEEEEeCCCceecccccccchhh
Q 001468 428 FSVLLADTVIVGEKVPDIVTSKSSKAVKD 456 (1073)
Q Consensus 428 ~gvriEDTVlVte~G~evLT~~~pk~l~~ 456 (1073)
+|++|||||+||++|+++||. +|++|..
T Consensus 330 ~gvriEd~v~vt~~G~e~Lt~-~~~~l~~ 357 (361)
T PRK09795 330 GGVRIEDVVLVTPQGAEVLYA-MPKTVLL 357 (361)
T ss_pred CEEEEeeEEEECCCCcEeCcC-CCceEEE
Confidence 899999999999999999997 9988743
No 5
>TIGR02993 ectoine_eutD ectoine utilization protein EutD. Members of this family are putative peptidases or hydrolases similar to Xaa-Pro aminopeptidase (pfam00557). They belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. The exact function is unknown.
Probab=100.00 E-value=5.8e-53 Score=490.35 Aligned_cols=373 Identities=17% Similarity=0.240 Sum_probs=298.6
Q ss_pred ccCCHHHHHHHHHHHHHHHhccCCCCCCCccEEEEeCCCCCCcccccccccceEeecCCcCCc----EEEEE-eCCcEEE
Q 001468 25 YAINLDNFSKRLKMLYSHWTEHNSDLWGDSNALAVATPPVSEDLRYLKSSALNVWLVGYEFPE----TIMVF-LKKQIHF 99 (1073)
Q Consensus 25 ~~i~~~~f~~Rl~rL~~~m~~~~~~~~~glDaLli~~g~~~~~~~Y~ks~al~~wLtGye~p~----tlll~-t~~~~~l 99 (1073)
..|+.++|++|+++|++.|++ +++|++|++.+. | ++|||||.... .++|+ ..+.+++
T Consensus 4 ~~f~~~E~~~Rl~rl~~~m~~------~~lDalli~~~~-n-----------i~YltG~~~~~~~~~~~l~v~~~~~~~l 65 (391)
T TIGR02993 4 LFFTRAEYQARLDKTRAAMEA------RGIDLLIVTDPS-N-----------MAWLTGYDGWSFYVHQCVLLPPEGEPIW 65 (391)
T ss_pred CCCCHHHHHHHHHHHHHHHHH------cCCCEEEEcCcc-c-----------ceeeccCCCCceEEEEEEEEcCCCceEE
Confidence 349999999999999999999 899999999987 4 78999998532 23444 4667777
Q ss_pred EEeCCccchHHHHHhhcccccceEEEEEeCCC--CCCCCChHHHHHHHhhhcccCCCCCCCEEEEeCCC-CCcHHHHHHH
Q 001468 100 LCSQKKASLLEVIKKSAKEAVGIEVVIHVKGK--TDDGSGLMDKIFGAVNDQSKSGGQNSPVVGHISRE-APEGKLLETW 176 (1073)
Q Consensus 100 l~s~kK~~~le~~~~~~~~~~~vei~~~~kd~--~d~~~~~~~~l~~~Lk~~~~~~~~~~~rIGv~~kd-~~~g~~~~~l 176 (1073)
+++.. + ...+.... .....++..|.... .... ..++.+.+.|++. +...++||++... .++...+..|
T Consensus 66 ~~~~~--~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~----g~~~~~ig~e~~~~~~~~~~~~~l 136 (391)
T TIGR02993 66 YGRGQ--D-ANGAKRTA-FMDHDNIVGYPDHYVQSTER-HPMDYLSEILQDR----GWDSLTIGVEMDNYYFSAAAFASL 136 (391)
T ss_pred Eehhh--h-hhhHhhee-eccccceeecccccccCCCC-CHHHHHHHHHHhc----CCCCCcEEEecCCCccCHHHHHHH
Confidence 77531 1 12222110 00011233332100 0111 5577788888752 2345689999653 3678888888
Q ss_pred HHHHhhcCceEEeCCcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCHHHHHHHHHHHHHccch
Q 001468 177 NEKLKKANFALSDVSNGFSDLFAIKDDTELTNIKKAAFLSSSVMKQFVVPKLEKVIDEEKKVSHSSLMDETEKAILEPAR 256 (1073)
Q Consensus 177 ~~~l~~~~~e~vDvs~~l~~lR~VKd~~EI~~iR~Aa~ia~~a~~~~~~~~i~~iid~e~GvtE~eLa~~ie~~l~~~gk 256 (1073)
.+.++ +++++|++.++.++|+|||++||++||+|+++++.+|. ++.+.++ +|+||.||++.+.......
T Consensus 137 ~~~l~--~~~~~d~~~~~~~lR~iKs~~EI~~lr~A~~i~~~~~~-~~~~~i~------pG~tE~ei~~~~~~~~~~~-- 205 (391)
T TIGR02993 137 QKHLP--NARFVDATALVNWQRAVKSETEISYMRVAARIVEKMHQ-RIFERIE------PGMRKCDLVADIYDAGIRG-- 205 (391)
T ss_pred HHhCC--CCEEEehHHHHHHHHccCCHHHHHHHHHHHHHHHHHHH-HHHHHhc------CCCCHHHHHHHHHHhhhhc--
Confidence 88887 78999999999999999999999999999999999999 8888888 5999999999886543210
Q ss_pred hhhhcccCCCCCCCCCeEEeCCCCCCCCCCcCCCcccccCCcceEEEeeceeeCCeEeeeEEEEEec-CChHHHHHHHHH
Q 001468 257 IKVKLKAENVDICYPPIFQSGGEFDLKPSASSNDNYLYYDSTSVIICAVGSRYNSYCSNVARTFLID-ANTVQSKAYEVL 335 (1073)
Q Consensus 257 ~~~~~g~~~~~~~y~piV~SG~n~~l~~h~~~~dr~L~~G~~dvI~vdlG~~y~GY~sditRT~~Vg-Ps~eq~~~y~~l 335 (1073)
. .+.+....+|.||++||.|+++ ||+.|+++.|+.| |+|++|+|++|+|||||++|||++| |+++|+++|+++
T Consensus 206 ~---~~~g~~~~~~~~iv~sG~~~a~-pH~~~~~~~l~~g--d~v~iD~g~~~~GY~sD~tRT~~vG~p~~~~~~~~~~~ 279 (391)
T TIGR02993 206 V---DGFGGDYPAIVPLLPSGADASA-PHLTWDDSPMKVG--EGTFFEIAGCYKRYHCPLSRTVFLGKPTQAFLDAEKAV 279 (391)
T ss_pred c---cCcCCCcCCcccccccCccccC-CCCCCCCCcccCC--CEEEEEeeeecccCccceeEEEEcCCCCHHHHHHHHHH
Confidence 0 1112224567789999999987 9999999999999 9999999999999999999999998 899999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCccccccCCccccccccccccC----CCcccCCCCceecCCcEEEEee
Q 001468 336 LKAHEAAISALKSGNKVSAAYKAASTVVEKDAPELAANLTRNAGTGIGLEFRES----GLSLNAKNDRILKAGMVFNVSL 411 (1073)
Q Consensus 336 lea~~a~i~~lkPGvt~~dV~~aa~~~l~~~Gp~l~~~~~h~~GHgIGle~~E~----p~~l~~~~~~~L~~GMVf~IEp 411 (1073)
++||.++++++|||+++++|++++++++++.| +.. .|++|||||+++|+. +..|++++..+|++||||+|||
T Consensus 280 ~~a~~~~i~~ikpG~~~~dv~~~~~~~~~~~G--~~~--~h~~GhgiGl~~~~~~~e~~~~l~~~~~~~L~~GMv~tvEp 355 (391)
T TIGR02993 280 LEGMEAGLEAAKPGNTCEDIANAFFAVLKKYG--IHK--DSRTGYPIGLSYPPDWGERTMSLRPGDNTVLKPGMTFHFMT 355 (391)
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcC--Ccc--CCCceeeeccCcCCCCCCccccccCCCCceecCCCEEEEcc
Confidence 99999999999999999999999999999999 643 589999999998742 3368899999999999999999
Q ss_pred ccccccCCCCCCCCCeeeEEEEEEEEEeCCCceecccccccchhh
Q 001468 412 GFQNLQTENKNPKTQKFSVLLADTVIVGEKVPDIVTSKSSKAVKD 456 (1073)
Q Consensus 412 G~~~l~~~~~~~~~~~~gvriEDTVlVte~G~evLT~~~pk~l~~ 456 (1073)
|+| + ++ +|++|||||+||++|+++||. +|++|..
T Consensus 356 giy-~--------~~-~Gvried~v~VT~~G~e~Lt~-~p~~l~~ 389 (391)
T TIGR02993 356 GLW-M--------ED-WGLEITESILITETGVECLSS-VPRKLFV 389 (391)
T ss_pred eeE-e--------CC-CCeEEeeEEEECCCcceeccc-CCcccEe
Confidence 999 4 33 589999999999999999997 9998854
No 6
>COG0006 PepP Xaa-Pro aminopeptidase [Amino acid transport and metabolism]
Probab=100.00 E-value=4.8e-51 Score=473.80 Aligned_cols=369 Identities=24% Similarity=0.353 Sum_probs=307.0
Q ss_pred CCHHHHHHHHHHHHHHHhccCCCCCCCccEEEEeCCCCCCcccccccccceEeecCCcC-C----cEEEEEeCCcEEEEE
Q 001468 27 INLDNFSKRLKMLYSHWTEHNSDLWGDSNALAVATPPVSEDLRYLKSSALNVWLVGYEF-P----ETIMVFLKKQIHFLC 101 (1073)
Q Consensus 27 i~~~~f~~Rl~rL~~~m~~~~~~~~~glDaLli~~g~~~~~~~Y~ks~al~~wLtGye~-p----~tlll~t~~~~~ll~ 101 (1073)
+...++..|+.+++..|.. .++|++++..+. | ++|||||.. + ..+++...+.++|++
T Consensus 5 ~~~~~~~~rl~~~~~~~~~------~~~~~~~~~~~~-n-----------~~yltg~~~~~~~~~~~~~~~~~~~~~l~~ 66 (384)
T COG0006 5 FADEEYRARLARLRELMEE------AGLDALLLTSPS-N-----------FYYLTGFDAFGFERLQALLVPAEGEPVLFV 66 (384)
T ss_pred cchHHHHHHHHHHHHHHHH------cCCcEEEecCCC-c-----------eEEEeCCCCCcccceEEEEEcCCCceEEEE
Confidence 6677899999999999998 899999999987 4 899999984 1 233444455689999
Q ss_pred eCCccchHHHHHhhcccccc-eEEEEEeCCCCCCCCChHHHHHHHhhhcccCCCCCCCEEEEeCCCC-CcHHHHHHHHHH
Q 001468 102 SQKKASLLEVIKKSAKEAVG-IEVVIHVKGKTDDGSGLMDKIFGAVNDQSKSGGQNSPVVGHISREA-PEGKLLETWNEK 179 (1073)
Q Consensus 102 s~kK~~~le~~~~~~~~~~~-vei~~~~kd~~d~~~~~~~~l~~~Lk~~~~~~~~~~~rIGv~~kd~-~~g~~~~~l~~~ 179 (1073)
+.. +.+...... ... ..+..+..+. ... ..++.+...+... +....++|++.... .+...+..++..
T Consensus 67 ~~~---~~~~~~~~~--~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~----~~~~~~~g~~~~~~~~~~~~~~~l~~~ 135 (384)
T COG0006 67 RGR---DEEAAKETS--WIKLENVEVYEDDE-DPA-APLDLLGALLEEL----GLAGKRIGIESASIFLTLAAFERLQAA 135 (384)
T ss_pred cch---hHHHHHhhc--ccccCceEEEecCC-ccc-cHHHHHHHHHHhc----cccccceEEEeccCccCHHHHHHHHhh
Confidence 764 233332221 111 1333342111 110 1345566666531 23467899996532 566777777777
Q ss_pred HhhcCceEEeCCcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCHHHHHHHHHHHHHccchhhh
Q 001468 180 LKKANFALSDVSNGFSDLFAIKDDTELTNIKKAAFLSSSVMKQFVVPKLEKVIDEEKKVSHSSLMDETEKAILEPARIKV 259 (1073)
Q Consensus 180 l~~~~~e~vDvs~~l~~lR~VKd~~EI~~iR~Aa~ia~~a~~~~~~~~i~~iid~e~GvtE~eLa~~ie~~l~~~gk~~~ 259 (1073)
++ ..+++|++..+..+|+|||+.||+.||+|+.+++.+|. .+.+.++ +|+||.+|++.++..+..
T Consensus 136 ~~--~~~~~~~~~~i~~lR~iKs~~EI~~ir~A~~i~~~a~~-~~~~~~~------~g~tE~ev~a~l~~~~~~------ 200 (384)
T COG0006 136 LP--RAELVDASDLVDRLRLIKSPAEIAKIRKAAEIADAALE-AALEAIR------PGMTEAEIAAELEYALRK------ 200 (384)
T ss_pred CC--CCEEeccHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH-HHHHhcc------CCCcHHHHHHHHHHHHHH------
Confidence 76 45899999999999999999999999999999999999 8999888 599999999999999975
Q ss_pred hcccCCCCCCCCCeEEeCCCCCCCCCCcCCCcccccCCcceEEEeeceeeCCeEeeeEEEEEec-CChHHHHHHHHHHHH
Q 001468 260 KLKAENVDICYPPIFQSGGEFDLKPSASSNDNYLYYDSTSVIICAVGSRYNSYCSNVARTFLID-ANTVQSKAYEVLLKA 338 (1073)
Q Consensus 260 ~~g~~~~~~~y~piV~SG~n~~l~~h~~~~dr~L~~G~~dvI~vdlG~~y~GY~sditRT~~Vg-Ps~eq~~~y~~llea 338 (1073)
.|+. ..+|++||++|.|+++ ||+.++++.++.| |+|++|+|+.|+|||||+||||++| |+++|+++|+.+++|
T Consensus 201 -~G~~--~~sf~~iv~~G~n~a~-pH~~~~~~~~~~g--d~vliD~G~~~~gY~sDiTRT~~~G~~~~~~~~iy~~V~~a 274 (384)
T COG0006 201 -GGAE--GPSFDTIVASGENAAL-PHYTPSDRKLRDG--DLVLIDLGGVYNGYCSDITRTFPIGKPSDEQREIYEAVLEA 274 (384)
T ss_pred -cCCC--ccCcCcEEeccccccC-cCCCCCcccccCC--CEEEEEeeeEECCccccceeEEecCCCCHHHHHHHHHHHHH
Confidence 3433 4589999999999997 9999999999999 9999999999999999999999999 999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHhcCCccccccCCccccccc--cccccCCCcccCCCCceecCCcEEEEeeccccc
Q 001468 339 HEAAISALKSGNKVSAAYKAASTVVEKDAPELAANLTRNAGTGIG--LEFRESGLSLNAKNDRILKAGMVFNVSLGFQNL 416 (1073)
Q Consensus 339 ~~a~i~~lkPGvt~~dV~~aa~~~l~~~Gp~l~~~~~h~~GHgIG--le~~E~p~~l~~~~~~~L~~GMVf~IEpG~~~l 416 (1073)
|.++++++|||+++++|+.++++++.+.| +..+|.|++|||+| +++||.|..+.+++..+|++||||++|||+| +
T Consensus 275 q~aa~~~~rpG~~~~~vd~~ar~~i~~~g--~~~~~~h~~GHgvG~~l~vhE~p~~~~~~~~~~L~~GMv~t~Epg~y-~ 351 (384)
T COG0006 275 QEAAIAAIRPGVTGGEVDAAARQVLEKAG--YGLYFLHGTGHGVGFVLDVHEHPQYLSPGSDTTLEPGMVFSIEPGIY-I 351 (384)
T ss_pred HHHHHHHhCCCCcHHHHHHHHHHHHHhcC--CcccccCCccccCCCCcccCcCccccCCCCCccccCCcEEEeccccc-c
Confidence 99999999999999999999999999999 89999999999999 9999999558899999999999999999998 4
Q ss_pred cCCCCCCCCCeeeEEEEEEEEEeCCCceecccccccchhhh
Q 001468 417 QTENKNPKTQKFSVLLADTVIVGEKVPDIVTSKSSKAVKDV 457 (1073)
Q Consensus 417 ~~~~~~~~~~~~gvriEDTVlVte~G~evLT~~~pk~l~~I 457 (1073)
++.+|+||||+|+||++|+++|| ..|+.+..+
T Consensus 352 --------~g~~GirIEd~vlVte~G~e~LT-~~~~~~~~~ 383 (384)
T COG0006 352 --------PGGGGVRIEDTVLVTEDGFEVLT-RVPKELLVI 383 (384)
T ss_pred --------CCCceEEEEEEEEEcCCCceecc-cCCcceeec
Confidence 68899999999999999999999 599887654
No 7
>PRK10879 proline aminopeptidase P II; Provisional
Probab=100.00 E-value=1.8e-51 Score=483.28 Aligned_cols=388 Identities=17% Similarity=0.265 Sum_probs=295.5
Q ss_pred CCHHHHHHHHHHHHHHHhccCCCCCCCccEEEEeCCC---CCCccccc-ccccceEeecCCcCCcEEEEEeCC-----cE
Q 001468 27 INLDNFSKRLKMLYSHWTEHNSDLWGDSNALAVATPP---VSEDLRYL-KSSALNVWLVGYEFPETIMVFLKK-----QI 97 (1073)
Q Consensus 27 i~~~~f~~Rl~rL~~~m~~~~~~~~~glDaLli~~g~---~~~~~~Y~-ks~al~~wLtGye~p~tlll~t~~-----~~ 97 (1073)
++.++|..|+++|.+.|... + ++||.++. ++.++.|+ +|.+.|+||||+..|++++|+.++ ..
T Consensus 1 ~~~~~~~~rR~~l~~~~~~~------~--~~v~~~~~~~~~~~d~~y~Frq~s~F~YltG~~ep~~~lv~~~~~~~~~~~ 72 (438)
T PRK10879 1 MTQQEFQRRRQALLAKMQPG------S--AALIFAAPEATRSADSEYPYRQNSDFWYFTGFNEPEAVLVLIKSDDTHNHS 72 (438)
T ss_pred CChHHHHHHHHHHHhhCCCC------c--EEEEeCCCccccCCCCCCCccCCCceeeeeCCCCCCeEEEEecCCCCCCeE
Confidence 46789999999999999861 1 45556555 34567787 999999999999999998887542 36
Q ss_pred EEEEeCCccchHHHHHhhc------ccccceE-EEEEeCCCCCCCCChHHHHHHHhhhcccCCCCCCCEEEEeCCCC---
Q 001468 98 HFLCSQKKASLLEVIKKSA------KEAVGIE-VVIHVKGKTDDGSGLMDKIFGAVNDQSKSGGQNSPVVGHISREA--- 167 (1073)
Q Consensus 98 ~ll~s~kK~~~le~~~~~~------~~~~~ve-i~~~~kd~~d~~~~~~~~l~~~Lk~~~~~~~~~~~rIGv~~kd~--- 167 (1073)
+||+.++... .+.|.+.. ....+++ +..+ +.+...+..+.. ....+.......
T Consensus 73 ~Lf~~~~d~~-~e~W~G~~~~~~~a~~~~g~d~v~~~---------~~l~~~l~~~~~-------~~~~~~~~~~~~~~~ 135 (438)
T PRK10879 73 VLFNRVRDLT-AEIWFGRRLGQDAAPEKLGVDRALPF---------SEINQQLYQLLN-------GLDVVYHAQGEYAYA 135 (438)
T ss_pred EEEeCCCCCC-ccEEcCcCCCHHHHHHHhCCCEEeeH---------HHHHHHHHHHhc-------CCceEEecCCccccc
Confidence 8888775322 33343220 0012222 2211 233444433321 233344332211
Q ss_pred --CcHHHHHHHHHHHhh---cCceEEeCCcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCHHH
Q 001468 168 --PEGKLLETWNEKLKK---ANFALSDVSNGFSDLFAIKDDTELTNIKKAAFLSSSVMKQFVVPKLEKVIDEEKKVSHSS 242 (1073)
Q Consensus 168 --~~g~~~~~l~~~l~~---~~~e~vDvs~~l~~lR~VKd~~EI~~iR~Aa~ia~~a~~~~~~~~i~~iid~e~GvtE~e 242 (1073)
.....+..+...... ....++|++++|.++|+|||++||++||+|++++..++. .+++.++ +|+||.+
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~lR~iKs~~EI~~~r~A~~i~~~a~~-~~~~~~~------pG~tE~e 208 (438)
T PRK10879 136 DEIVFSALEKLRKGSRQNLTAPATLTDWRPWVHEMRLFKSPEEIAVLRRAGEISALAHT-RAMEKCR------PGMFEYQ 208 (438)
T ss_pred hhHHHHHHHHHHhhhccccCCcccchHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH-HHHHhcC------CCCcHHH
Confidence 112223333322211 135688999999999999999999999999999999999 8888887 6999999
Q ss_pred HHHHHHHHHHccchhhhhcccCCCCCCCCCeEEeCCCCCCCCCCcCCCcccccCCcceEEEeeceeeCCeEeeeEEEEEe
Q 001468 243 LMDETEKAILEPARIKVKLKAENVDICYPPIFQSGGEFDLKPSASSNDNYLYYDSTSVIICAVGSRYNSYCSNVARTFLI 322 (1073)
Q Consensus 243 La~~ie~~l~~~gk~~~~~g~~~~~~~y~piV~SG~n~~l~~h~~~~dr~L~~G~~dvI~vdlG~~y~GY~sditRT~~V 322 (1073)
|++.+.+.+.. .|+. ..+|++||++|.|.+. +|+.++++.|+.| |+|++|+|+.|+|||||+||||+|
T Consensus 209 i~a~~~~~~~~-------~G~~--~~~~~~iv~~G~na~~-~H~~~~~~~l~~G--DlVliD~G~~~~GY~sDitRT~~v 276 (438)
T PRK10879 209 LEGEIHHEFNR-------HGAR--YPSYNTIVGSGENGCI-LHYTENESEMRDG--DLVLIDAGCEYKGYAGDITRTFPV 276 (438)
T ss_pred HHHHHHHHHHH-------CCCC--CCCCCcEEEEcCcccc-ccCCCCccccCCC--CEEEEEeCeEECCEEEEeEEEEEE
Confidence 99999888864 2332 4678999999999886 9999999999999 999999999999999999999999
Q ss_pred -c-CChHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH------------------hcCCccccccCCcccccc
Q 001468 323 -D-ANTVQSKAYEVLLKAHEAAISALKSGNKVSAAYKAASTVVE------------------KDAPELAANLTRNAGTGI 382 (1073)
Q Consensus 323 -g-Ps~eq~~~y~~llea~~a~i~~lkPGvt~~dV~~aa~~~l~------------------~~Gp~l~~~~~h~~GHgI 382 (1073)
| |+++|+++|++++++++++++++|||+++++|+.++.+++. +.+ +..+|+|++||+|
T Consensus 277 ~G~~s~~q~~~y~~vl~a~~aai~~~kpG~~~~~v~~~~~~~~~~~l~~~Gl~~~~~~~~~~~~~--~~~~~~Hg~GH~i 354 (438)
T PRK10879 277 NGKFTPAQREIYDIVLESLETSLRLYRPGTSIREVTGEVVRIMVSGLVKLGILKGDVDQLIAENA--HRPFFMHGLSHWL 354 (438)
T ss_pred CCcCCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHhCCcCCCHHHHHHhcc--CccccCCCCcccc
Confidence 5 79999999999999999999999999999999999987654 334 6678999999999
Q ss_pred ccccccCCCcccCCCCceecCCcEEEEeeccccccCCCCCCCCCeeeEEEEEEEEEeCCCceecccccccchhhhcccc
Q 001468 383 GLEFRESGLSLNAKNDRILKAGMVFNVSLGFQNLQTENKNPKTQKFSVLLADTVIVGEKVPDIVTSKSSKAVKDVAYSF 461 (1073)
Q Consensus 383 Gle~~E~p~~l~~~~~~~L~~GMVf~IEpG~~~l~~~~~~~~~~~~gvriEDTVlVte~G~evLT~~~pk~l~~I~~~~ 461 (1073)
|+++||.|. +.+++.++|++||||+||||+|..++..+......+|+||||||+||++|+++||..+|+++.+|+-.+
T Consensus 355 GldvHd~~~-~~~~~~~~L~~GmV~tvEPgiY~~~~~~~~~~~~~~GiRiED~VlVT~~G~e~LT~~~pk~~~~iE~~m 432 (438)
T PRK10879 355 GLDVHDVGV-YGQDRSRILEPGMVLTVEPGLYIAPDADVPEQYRGIGIRIEDDIVITETGNENLTASVVKKPDEIEALM 432 (438)
T ss_pred CcCcCcCCC-cCCCCCCcCCCCCEEEECCEEEECCCcCcccccCccEEEeccEEEECCCcCeEcCccCCCCHHHHHHHH
Confidence 999999984 666778999999999999999942222222223347999999999999999999988999999986444
No 8
>PRK14575 putative peptidase; Provisional
Probab=100.00 E-value=2.2e-50 Score=470.52 Aligned_cols=363 Identities=15% Similarity=0.216 Sum_probs=288.8
Q ss_pred HHHHHHHHHHHHhccCCCCCCCccEEEEeCCCCCCcccccccccceEeecCCcCCc---------EEEEEeCC--cEE-E
Q 001468 32 FSKRLKMLYSHWTEHNSDLWGDSNALAVATPPVSEDLRYLKSSALNVWLVGYEFPE---------TIMVFLKK--QIH-F 99 (1073)
Q Consensus 32 f~~Rl~rL~~~m~~~~~~~~~glDaLli~~g~~~~~~~Y~ks~al~~wLtGye~p~---------tlll~t~~--~~~-l 99 (1073)
+..=++++++.|++ +|+|+|||+.+. | ++|||||.... +++|++.+ .++ +
T Consensus 9 ~~~~~~rlr~~m~~------~glD~lvl~~p~-n-----------~~ylTG~~~~~~~~~r~~~~~~lvv~~~~~~p~~~ 70 (406)
T PRK14575 9 LNTVSRKLRTIMER------DNIDAVIVTTCD-N-----------FYHVTGILSFFMYTFRNTGTAIAVVFRDVKIPSLI 70 (406)
T ss_pred HHHHHHHHHHHHHH------cCCCEEeecCcc-h-----------heeecccccccceecccCCceEEEEEcCCCCCceE
Confidence 33457889999999 899999999988 4 89999987522 23455543 355 6
Q ss_pred EEeCCccchHHHHHhhcccc--cceEEEEEeCCCCC-----------CCCChHH----HHHHHhhhcccCCCCCCCEEEE
Q 001468 100 LCSQKKASLLEVIKKSAKEA--VGIEVVIHVKGKTD-----------DGSGLMD----KIFGAVNDQSKSGGQNSPVVGH 162 (1073)
Q Consensus 100 l~s~kK~~~le~~~~~~~~~--~~vei~~~~kd~~d-----------~~~~~~~----~l~~~Lk~~~~~~~~~~~rIGv 162 (1073)
+++.. + ...+....... ..+.++....++.. ...+..+ .+.+.|+++ +..+++||+
T Consensus 71 i~p~~--E-~~~~~~~~~~~~~~~~~~~~d~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~igv 143 (406)
T PRK14575 71 IMNEF--E-AASLTLDMPNAELKTFPVWVDVDDPFNMRDSANNNKERPIGPPIESVCNILKDALNDA----RVLNKKIAI 143 (406)
T ss_pred Eechh--h-hhhhcccccccccccCCceEeeeccccccchhhhhhcCCCCCCHHHHHHHHHHHHHhc----CCcCCEEEE
Confidence 65442 2 11222110000 01222222111111 0001223 445666532 246789999
Q ss_pred eCCCCCcHHHHHHHHHHHhhcCceEEeCCcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCHHH
Q 001468 163 ISREAPEGKLLETWNEKLKKANFALSDVSNGFSDLFAIKDDTELTNIKKAAFLSSSVMKQFVVPKLEKVIDEEKKVSHSS 242 (1073)
Q Consensus 163 ~~kd~~~g~~~~~l~~~l~~~~~e~vDvs~~l~~lR~VKd~~EI~~iR~Aa~ia~~a~~~~~~~~i~~iid~e~GvtE~e 242 (1073)
+.. .++...+..+...++ +++++|++.+|..+|+|||++||++||+|++++++++. ++.+.++ +|+||.+
T Consensus 144 e~~-~~~~~~~~~l~~~lp--~~~~~d~~~~l~~lR~iKs~~EI~~~r~A~~i~~~a~~-~~~~~i~------pG~tE~e 213 (406)
T PRK14575 144 DLN-IMSNGGKRVIDAVMP--NVDFVDSSSIFNELRVIKSPWEIKRLRKSAEITEYGIT-EASKLIR------VGCTSAE 213 (406)
T ss_pred ccC-CCCHHHHHHHHHhCC--CCeEEEcHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH-HHHHhcc------CCCCHHH
Confidence 965 567777888887776 78999999999999999999999999999999999999 8888888 5999999
Q ss_pred HHHHHHHHHHccchhhhhcccCCCCCCCCCeEEeCCCCCCCCCCcCCCcccccCCcceEEEeeceeeCCeEeeeEEEEEe
Q 001468 243 LMDETEKAILEPARIKVKLKAENVDICYPPIFQSGGEFDLKPSASSNDNYLYYDSTSVIICAVGSRYNSYCSNVARTFLI 322 (1073)
Q Consensus 243 La~~ie~~l~~~gk~~~~~g~~~~~~~y~piV~SG~n~~l~~h~~~~dr~L~~G~~dvI~vdlG~~y~GY~sditRT~~V 322 (1073)
|++.+...+... |.. ..++.++|++|+++ .+|+.+++++|+.| |+|++|+|++|+|||||++|||++
T Consensus 214 laa~~~~~~~~~-------g~~--~~~~~~~v~~G~~~--~~h~~~~~~~l~~G--d~v~iD~g~~~~GY~sditRT~~v 280 (406)
T PRK14575 214 LTAAYKAAVMSK-------SET--HFSRFHLISVGADF--SPKLIPSNTKACSG--DLIKFDCGVDVDGYGADIARTFVV 280 (406)
T ss_pred HHHHHHHHHHHc-------CCC--cCCcCceEEECCCc--ccCCCCCCCcCCCC--CEEEEEeceEECCEeeeeEEEEEC
Confidence 999998877542 221 23445789999985 37999999999999 999999999999999999999999
Q ss_pred c-CChHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCccccccCCccccccc--cccccCCCcccCCCCc
Q 001468 323 D-ANTVQSKAYEVLLKAHEAAISALKSGNKVSAAYKAASTVVEKDAPELAANLTRNAGTGIG--LEFRESGLSLNAKNDR 399 (1073)
Q Consensus 323 g-Ps~eq~~~y~~llea~~a~i~~lkPGvt~~dV~~aa~~~l~~~Gp~l~~~~~h~~GHgIG--le~~E~p~~l~~~~~~ 399 (1073)
| |+++|+++|+++++++.++++++|||+++++|++++++++++.| |.+++.|++|||+| +.+||.|. +.++++.
T Consensus 281 G~~~~~~~~~~~~~~~a~~~~~~~~rpG~~~~dv~~a~~~~~~~~G--~~~~~~~~~GHGiG~~lg~~e~P~-i~~~~~~ 357 (406)
T PRK14575 281 GEPPEITRKIYQTIRTGHEHMLSMVAPGVKMKDVFDSTMEVIKKSG--LPNYNRGHLGHGNGVFLGLEESPF-VSTHATE 357 (406)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcC--CccccCCCCCCcccCCCCCccCCC-CCCCCCC
Confidence 9 89999999999999999999999999999999999999999999 88889999999999 58999994 7788899
Q ss_pred eecCCcEEEEeeccccccCCCCCCCCCeeeEEEEEEEEEeCCCceecccccccchh
Q 001468 400 ILKAGMVFNVSLGFQNLQTENKNPKTQKFSVLLADTVIVGEKVPDIVTSKSSKAVK 455 (1073)
Q Consensus 400 ~L~~GMVf~IEpG~~~l~~~~~~~~~~~~gvriEDTVlVte~G~evLT~~~pk~l~ 455 (1073)
+|++||||+||||+| + ++.+|+++||||+||++|+++||. +|++|.
T Consensus 358 ~Le~GMv~tiEpgiy-~--------~g~gGvriEDtvlVT~~G~e~LT~-~p~~l~ 403 (406)
T PRK14575 358 SFTSGMVLSLETPYY-G--------YNLGSIMIEDMILINKEGIEFLSK-LPRDLV 403 (406)
T ss_pred CcCCCCEEEECCeee-c--------CCCcEEEEEeEEEEcCCCcccCCC-CCcccc
Confidence 999999999999999 3 467899999999999999999996 998875
No 9
>PRK14576 putative endopeptidase; Provisional
Probab=100.00 E-value=1.1e-48 Score=456.14 Aligned_cols=363 Identities=15% Similarity=0.239 Sum_probs=287.3
Q ss_pred HHHHHHHHHHHHhccCCCCCCCccEEEEeCCCCCCcccccccccceEeecCCcCC-------cE--EEEEeCC--cE-EE
Q 001468 32 FSKRLKMLYSHWTEHNSDLWGDSNALAVATPPVSEDLRYLKSSALNVWLVGYEFP-------ET--IMVFLKK--QI-HF 99 (1073)
Q Consensus 32 f~~Rl~rL~~~m~~~~~~~~~glDaLli~~g~~~~~~~Y~ks~al~~wLtGye~p-------~t--lll~t~~--~~-~l 99 (1073)
+..=.+++++.|++ +|+|+||++.+. | ++|||||... .. +.|++.+ .+ ++
T Consensus 9 ~~~~~~r~r~~M~~------~gldalll~~p~-n-----------i~YlTG~~~~~~~~~r~~~~~v~v~~~d~~~p~~~ 70 (405)
T PRK14576 9 LEAVSRKARVVMER------EGIDALVVTVCD-N-----------FYYLTGFASFFMYTFRHTGAAVAIMFRDANIPSQI 70 (405)
T ss_pred HHHHHHHHHHHHHH------cCCCEEEecccc-c-----------eeeeccccccceeeeccCCeEEEEecCCCCCCcEE
Confidence 33445789999999 899999999988 4 8999999843 12 2223333 34 66
Q ss_pred EEeCCccchHHHHHhhcccc--cceEEEEEeCCCCC--------------CCCChHHHHHHHhhhcccCCCCCCCEEEEe
Q 001468 100 LCSQKKASLLEVIKKSAKEA--VGIEVVIHVKGKTD--------------DGSGLMDKIFGAVNDQSKSGGQNSPVVGHI 163 (1073)
Q Consensus 100 l~s~kK~~~le~~~~~~~~~--~~vei~~~~kd~~d--------------~~~~~~~~l~~~Lk~~~~~~~~~~~rIGv~ 163 (1073)
+++..... .+....... ..+.++....++.. .....++.+.+.|++. +..+++||++
T Consensus 71 i~~~~e~~---~~~~~~~~~~~~~~~~~~d~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----g~~~~rigve 143 (405)
T PRK14576 71 IMNEFEAA---STHFDMPNSVLKTFPVWVDVDDPRNPHHHYKKRDRPIGPPVEAVFSLVKNALEDA----GVLDKTIAIE 143 (405)
T ss_pred Eechhhhh---hhhccccccccccCCceEeecCCcccchhhhccccCCCCcHHHHHHHHHHHHHHh----CCCCCEEEEc
Confidence 66542111 111000000 01222222111110 0001225566777653 4567899999
Q ss_pred CCCCCcHHHHHHHHHHHhhcCceEEeCCcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCHHHH
Q 001468 164 SREAPEGKLLETWNEKLKKANFALSDVSNGFSDLFAIKDDTELTNIKKAAFLSSSVMKQFVVPKLEKVIDEEKKVSHSSL 243 (1073)
Q Consensus 164 ~kd~~~g~~~~~l~~~l~~~~~e~vDvs~~l~~lR~VKd~~EI~~iR~Aa~ia~~a~~~~~~~~i~~iid~e~GvtE~eL 243 (1073)
.. .++...+..+...++ +++++|++.+|..+|+|||++||++||+|+++++.+|. .+.+.++ +|+||.||
T Consensus 144 ~~-~~~~~~~~~l~~~~~--~~~~vd~~~~l~~lR~iKs~~EI~~~r~A~~i~~~~~~-~~~~~i~------pG~tE~el 213 (405)
T PRK14576 144 LQ-AMSNGGKGVLDKVAP--GLKLVDSTALFNEIRMIKSPWEIEHLRKSAEITEYGIA-SAAKKIR------VGCTAAEL 213 (405)
T ss_pred cC-CCCHHHHHHHHhhCC--CCeEEEcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH-HHHHhcc------CCCCHHHH
Confidence 65 455656666776666 79999999999999999999999999999999999999 8899888 59999999
Q ss_pred HHHHHHHHHccchhhhhcccCCCCCCCCCeEEeCCCCCCCCCCcCCCcccccCCcceEEEeeceeeCCeEeeeEEEEEec
Q 001468 244 MDETEKAILEPARIKVKLKAENVDICYPPIFQSGGEFDLKPSASSNDNYLYYDSTSVIICAVGSRYNSYCSNVARTFLID 323 (1073)
Q Consensus 244 a~~ie~~l~~~gk~~~~~g~~~~~~~y~piV~SG~n~~l~~h~~~~dr~L~~G~~dvI~vdlG~~y~GY~sditRT~~Vg 323 (1073)
++.++..+.. .|.. ..++.++|++|+++ . +|..|+++.|+.| |+|++|+|++|+|||||++|||++|
T Consensus 214 aa~~~~~~~~-------~g~~--~~~~~~~v~~G~~~-~-~h~~~~~~~l~~G--d~v~~d~g~~~~GY~sd~tRT~~~G 280 (405)
T PRK14576 214 TAAFKAAVMS-------FPET--NFSRFNLISVGDNF-S-PKIIADTTPAKVG--DLIKFDCGIDVAGYGADLARTFVLG 280 (405)
T ss_pred HHHHHHHHHH-------cCCC--cCCCCCEEEECCcc-c-CCCCCCCcccCCC--CEEEEEeceeECCEEeeeeEEEECC
Confidence 9999888864 2322 23445899999995 3 7888999999999 9999999999999999999999998
Q ss_pred -CChHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCccccccCCccccccc--cccccCCCcccCCCCce
Q 001468 324 -ANTVQSKAYEVLLKAHEAAISALKSGNKVSAAYKAASTVVEKDAPELAANLTRNAGTGIG--LEFRESGLSLNAKNDRI 400 (1073)
Q Consensus 324 -Ps~eq~~~y~~llea~~a~i~~lkPGvt~~dV~~aa~~~l~~~Gp~l~~~~~h~~GHgIG--le~~E~p~~l~~~~~~~ 400 (1073)
|+++|+++|++++++++++++++|||++++||+.++.+++++.| |..++.|++|||+| +.+||.|. +.++++.+
T Consensus 281 ~p~~~~~~~~~~~~~a~~a~~~~~rPG~~~~dv~~a~~~~~~~~G--~~~~~~~~~GHgiG~~l~~~e~P~-i~~~~~~~ 357 (405)
T PRK14576 281 EPDKLTQQIYDTIRTGHEHMLSMVAPGVKLKAVFDSTMAVIKTSG--LPHYNRGHLGHGDGVFLGLEEVPF-VSTQATET 357 (405)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcC--CccccCCCCCCCCCCCCCcCcCCC-cCCCCCCc
Confidence 89999999999999999999999999999999999999999999 88888999999999 89999995 88899999
Q ss_pred ecCCcEEEEeeccccccCCCCCCCCCeeeEEEEEEEEEeCCCceecccccccchh
Q 001468 401 LKAGMVFNVSLGFQNLQTENKNPKTQKFSVLLADTVIVGEKVPDIVTSKSSKAVK 455 (1073)
Q Consensus 401 L~~GMVf~IEpG~~~l~~~~~~~~~~~~gvriEDTVlVte~G~evLT~~~pk~l~ 455 (1073)
|++||||+|||++|. ++.+|+++||||+||++|+++||. .|++|.
T Consensus 358 Le~GMv~~vEp~~y~---------~g~ggvriEDtvlVTe~G~e~LT~-~p~~l~ 402 (405)
T PRK14576 358 FCPGMVLSLETPYYG---------IGVGSIMLEDMILITDSGFEFLSK-LDRDLR 402 (405)
T ss_pred cCCCCEEEECCceee---------cCCCEEEEeeEEEECCCccccCCC-CCcccc
Confidence 999999999999994 567999999999999999999997 898864
No 10
>cd01091 CDC68-like Related to aminopeptidase P and aminopeptidase M, a member of this domain family is present in cell division control protein 68, a transcription factor.
Probab=100.00 E-value=8.7e-48 Score=419.00 Aligned_cols=240 Identities=51% Similarity=0.832 Sum_probs=220.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCHHHHHHHHHHHHHccchhhhhcccCCCCCCCCCeEEeCCCC-CCCC
Q 001468 206 LTNIKKAAFLSSSVMKQFVVPKLEKVIDEEKKVSHSSLMDETEKAILEPARIKVKLKAENVDICYPPIFQSGGEF-DLKP 284 (1073)
Q Consensus 206 I~~iR~Aa~ia~~a~~~~~~~~i~~iid~e~GvtE~eLa~~ie~~l~~~gk~~~~~g~~~~~~~y~piV~SG~n~-~l~~ 284 (1073)
|++||+||++++.+|++.+.+.|+.+||++..+||.+|+..++..|.+.++...+++++.+++||+|||+||+++ .+ +
T Consensus 1 ~~~~~~a~~~~~~~~~~~~~~~~~~~id~~~~~t~~~l~~~~e~~~~~~~~~~~~~~~~~~~~~y~~iv~sG~~~~~l-~ 79 (243)
T cd01091 1 LNNIKKASDATVDVLKKFFVDEVEEIIDQEKKVTHSKLSDKVEKAIEDKKKYKAKLDPEQLDWCYPPIIQSGGNYDLL-K 79 (243)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhCchhhhcCCCHHHcCcccCCeEeECcCcccC-C
Confidence 468999999999999879999999999999999999999999999988754433477778899999999999999 66 8
Q ss_pred CCcCCCcccccCCcceEEEeeceeeCCeEeeeEEEEEecCChHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 001468 285 SASSNDNYLYYDSTSVIICAVGSRYNSYCSNVARTFLIDANTVQSKAYEVLLKAHEAAISALKSGNKVSAAYKAASTVVE 364 (1073)
Q Consensus 285 h~~~~dr~L~~G~~dvI~vdlG~~y~GY~sditRT~~VgPs~eq~~~y~~llea~~a~i~~lkPGvt~~dV~~aa~~~l~ 364 (1073)
|+.++++.+..| ++|++|+|++|+|||||++|||+++|+++|+++|++++++++++++++|||+++++||+++.++++
T Consensus 80 h~~~s~~~~~~~--~~vl~d~G~~y~gY~sditRT~~v~p~~~~~~~y~~~~~a~~~~i~~lkpG~~~~dv~~~a~~~i~ 157 (243)
T cd01091 80 SSSSSDKLLYHF--GVIICSLGARYKSYCSNIARTFLIDPTSEQQKNYNFLLALQEEILKELKPGAKLSDVYQKTLDYIK 157 (243)
T ss_pred CCCCCccccCCC--CEEEEEeCcccCCEeecceEEEEcCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHH
Confidence 888888899988 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCccccccCCccccccccccccCCCcccCCCCceecCCcEEEEeeccccccCCC-CCCCCCeeeEEEEEEEEEeCCCc
Q 001468 365 KDAPELAANLTRNAGTGIGLEFRESGLSLNAKNDRILKAGMVFNVSLGFQNLQTEN-KNPKTQKFSVLLADTVIVGEKVP 443 (1073)
Q Consensus 365 ~~Gp~l~~~~~h~~GHgIGle~~E~p~~l~~~~~~~L~~GMVf~IEpG~~~l~~~~-~~~~~~~~gvriEDTVlVte~G~ 443 (1073)
+.+|++..+|+|++||||||++||+|++++++++++|++||||+||||||+++++. ++.+.+.||++|||||+||++|+
T Consensus 158 ~~~~~~~~~~~~~~GHgiGle~hE~~~~l~~~~~~~L~~GMvf~vepGi~~~~~~~~~~~~~~~~gv~ieDtV~Vt~~G~ 237 (243)
T cd01091 158 KKKPELEPNFTKNLGFGIGLEFRESSLIINAKNDRKLKKGMVFNLSIGFSNLQNPEPKDKESKTYALLLSDTILVTEDEP 237 (243)
T ss_pred HhChhHHHhCcCCcccccCcccccCccccCCCCCCCcCCCCEEEEeCCcccccCccccCccCCeeEEEEEEEEEEcCCCC
Confidence 99988999999999999999999998778999999999999999999999876542 22346789999999999999999
Q ss_pred -eeccc
Q 001468 444 -DIVTS 448 (1073)
Q Consensus 444 -evLT~ 448 (1073)
++||.
T Consensus 238 ~~~LT~ 243 (243)
T cd01091 238 AIVLTN 243 (243)
T ss_pred ceecCC
Confidence 99983
No 11
>PRK15173 peptidase; Provisional
Probab=100.00 E-value=1.6e-45 Score=417.36 Aligned_cols=277 Identities=16% Similarity=0.273 Sum_probs=243.3
Q ss_pred HHHHHHhhhcccCCCCCCCEEEEeCCCCCcHHHHHHHHHHHhhcCceEEeCCcccccccccCCHHHHHHHHHHHHHHHHH
Q 001468 140 DKIFGAVNDQSKSGGQNSPVVGHISREAPEGKLLETWNEKLKKANFALSDVSNGFSDLFAIKDDTELTNIKKAAFLSSSV 219 (1073)
Q Consensus 140 ~~l~~~Lk~~~~~~~~~~~rIGv~~kd~~~g~~~~~l~~~l~~~~~e~vDvs~~l~~lR~VKd~~EI~~iR~Aa~ia~~a 219 (1073)
+.|.+.|..+ +..+++||++.. .++...+..+.+.++ +++++|++.++..+|+|||++||++||+|+++++.+
T Consensus 42 ~~l~~~l~~~----g~~~~rigve~~-~~~~~~~~~l~~~l~--~~~~~d~~~~i~~lR~iKs~~EI~~mr~A~~i~~~~ 114 (323)
T PRK15173 42 NILKDALNDA----RVLNKKIAIDLN-IMSNGGKRVIDAVMP--NVDFVDSSSIFNELRVIKSPWEIKRLRKSAEITEYG 114 (323)
T ss_pred HHHHHHHHHc----CccCCEEEEecC-ccCHHHHHHHHhhCC--CCeEEEhHHHHHHHHccCCHHHHHHHHHHHHHHHHH
Confidence 3344555432 456789999965 567778888888887 789999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcccccCCCCHHHHHHHHHHHHHccchhhhhcccCCCCCCCCCeEEeCCCCCCCCCCcCCCcccccCCcc
Q 001468 220 MKQFVVPKLEKVIDEEKKVSHSSLMDETEKAILEPARIKVKLKAENVDICYPPIFQSGGEFDLKPSASSNDNYLYYDSTS 299 (1073)
Q Consensus 220 ~~~~~~~~i~~iid~e~GvtE~eLa~~ie~~l~~~gk~~~~~g~~~~~~~y~piV~SG~n~~l~~h~~~~dr~L~~G~~d 299 (1073)
+. .+.+.++ +|+||.||++.+...+... +.. ..++.+++++|+++. +|..++++.|+.| |
T Consensus 115 ~~-~~~~~i~------~G~tE~el~a~~~~~~~~~-------g~~--~~~~~~~i~~G~~~~--~h~~~~~~~l~~G--d 174 (323)
T PRK15173 115 IT-EASKLIR------VGCTSAELTAAYKAAVMSK-------SET--HFSRFHLISVGADFS--PKLIPSNTKACSG--D 174 (323)
T ss_pred HH-HHHHHcc------CCCCHHHHHHHHHHHHHHc-------CCC--CCCCCcEEEECCCCc--cCCCCCCCccCCC--C
Confidence 99 8888888 5999999999998777542 221 234557899999863 7888999999999 9
Q ss_pred eEEEeeceeeCCeEeeeEEEEEec-CChHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCccccccCCcc
Q 001468 300 VIICAVGSRYNSYCSNVARTFLID-ANTVQSKAYEVLLKAHEAAISALKSGNKVSAAYKAASTVVEKDAPELAANLTRNA 378 (1073)
Q Consensus 300 vI~vdlG~~y~GY~sditRT~~Vg-Ps~eq~~~y~~llea~~a~i~~lkPGvt~~dV~~aa~~~l~~~Gp~l~~~~~h~~ 378 (1073)
+|++|+|+.|+|||+|++|||++| |+++|+++|+++++++.++++++|||+++++|++++++++++.| +..++.|++
T Consensus 175 ~V~iD~g~~~~GY~aDitRT~~vG~p~~~~~~~y~~v~ea~~~~~~~irPG~~~~dv~~a~~~~~~~~G--~~~~~~~~~ 252 (323)
T PRK15173 175 LIKFDCGVDVDGYGADIARTFVVGEPPEITRKIYQTIRTGHEHMLSMVAPGVKMKDVFDSTMEVIKKSG--LPNYNRGHL 252 (323)
T ss_pred EEEEEeCccCCCEeeeeEEEEEcCCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcC--CccccCCCC
Confidence 999999999999999999999999 89999999999999999999999999999999999999999999 888888999
Q ss_pred cccccc--ccccCCCcccCCCCceecCCcEEEEeeccccccCCCCCCCCCeeeEEEEEEEEEeCCCceecccccccchhh
Q 001468 379 GTGIGL--EFRESGLSLNAKNDRILKAGMVFNVSLGFQNLQTENKNPKTQKFSVLLADTVIVGEKVPDIVTSKSSKAVKD 456 (1073)
Q Consensus 379 GHgIGl--e~~E~p~~l~~~~~~~L~~GMVf~IEpG~~~l~~~~~~~~~~~~gvriEDTVlVte~G~evLT~~~pk~l~~ 456 (1073)
|||||+ .+||.|. +.++++.+|++||||+||||+|. ++.+|+++||||+||++|+++||. +|++|..
T Consensus 253 GHGiG~~lg~~E~P~-i~~~~~~~Le~GMV~tiEPgiy~---------~g~ggvriEDtvlVTe~G~e~LT~-~p~~l~~ 321 (323)
T PRK15173 253 GHGNGVFLGLEESPF-VSTHATESFTSGMVLSLETPYYG---------YNLGSIMIEDMILINKEGIEFLSK-LPRDLVS 321 (323)
T ss_pred CCcCCCCCCcCCCCC-CCCCCCCccCCCCEEEECCEEEc---------CCCcEEEEeeEEEEcCCcceeCCC-CCcccee
Confidence 999996 8999995 77788899999999999999993 466899999999999999999997 9988753
No 12
>PRK13607 proline dipeptidase; Provisional
Probab=100.00 E-value=2.5e-44 Score=422.05 Aligned_cols=373 Identities=14% Similarity=0.113 Sum_probs=261.6
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCCccEEEEeCCCC----CCccccc-ccccceEeecCCc-CCcEEEEEeC--C-cEEEE
Q 001468 30 DNFSKRLKMLYSHWTEHNSDLWGDSNALAVATPPV----SEDLRYL-KSSALNVWLVGYE-FPETIMVFLK--K-QIHFL 100 (1073)
Q Consensus 30 ~~f~~Rl~rL~~~m~~~~~~~~~glDaLli~~g~~----~~~~~Y~-ks~al~~wLtGye-~p~tlll~t~--~-~~~ll 100 (1073)
..|.+.++++.+.+++.- .-.+.+++|+..|.. +.++.|+ +|.+.|+||||+. .|++++++.. + ..+|+
T Consensus 6 ~~~~~~~~~~~~r~~~~~--~~~~~~~i~l~~g~~~~~~~~D~~~~Frq~s~F~yl~G~~~~p~~~~~i~~~~~~~~~l~ 83 (443)
T PRK13607 6 SLYKEHIATLQQRTRDAL--AREGLDALLIHSGELHRVFLDDHDYPFKVNPQFKAWVPVTQVPNCWLLVDGVNKPKLWFY 83 (443)
T ss_pred HHHHHHHHHHHHHHHHHH--hccCCCEEEEECCCcccccCCCCCCCcCcCCCcchhcCCCCCCCeEEEEEeCCCCEEEEE
Confidence 345666665555553210 004567888888872 2456677 9999999999996 7999888853 3 44555
Q ss_pred EeCCccchHHHHHhhcccccceEEE--EEeCCCCCCCCChHHHHHHHhhhcccCCCCCCCEEEEeCCCCCcHHHHHHHHH
Q 001468 101 CSQKKASLLEVIKKSAKEAVGIEVV--IHVKGKTDDGSGLMDKIFGAVNDQSKSGGQNSPVVGHISREAPEGKLLETWNE 178 (1073)
Q Consensus 101 ~s~kK~~~le~~~~~~~~~~~vei~--~~~kd~~d~~~~~~~~l~~~Lk~~~~~~~~~~~rIGv~~kd~~~g~~~~~l~~ 178 (1073)
. +. ++ |.+... ..-+.+ .+. .+.. .....+...|.. ....+.+.+.......+ ..
T Consensus 84 ~-~~--d~---W~g~~~--~~~~~~~~~~~---~~~~-~~~~~~~~~l~~-------~~~~~~~~~~~~~~~~~----~~ 140 (443)
T PRK13607 84 Q-PV--DY---WHNVEP--LPESFWTEEVD---IKAL-TKADGIASLLPA-------DRGNVAYIGEVPERALA----LG 140 (443)
T ss_pred e-cC--cc---ccCCCC--CchHHHHHhcC---hHhc-ccHHHHHHhhcc-------CCCceEEeccccccccc----cc
Confidence 5 42 32 322100 000000 010 0111 334566666652 23334443221110000 00
Q ss_pred HHhhcCceEEeCCcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCHHHHHHHHHHHHHccchhh
Q 001468 179 KLKKANFALSDVSNGFSDLFAIKDDTELTNIKKAAFLSSSVMKQFVVPKLEKVIDEEKKVSHSSLMDETEKAILEPARIK 258 (1073)
Q Consensus 179 ~l~~~~~e~vDvs~~l~~lR~VKd~~EI~~iR~Aa~ia~~a~~~~~~~~i~~iid~e~GvtE~eLa~~ie~~l~~~gk~~ 258 (1073)
+........++...|..+|+|||++||++||+|+++++.++. ++++.++ +|+||.+|++.+.....
T Consensus 141 -~~~~~~~~~~l~~~l~~lR~iKs~~EI~~mr~A~~i~~~a~~-~~~~~i~------pG~tE~ei~~~~~~~~~------ 206 (443)
T PRK13607 141 -FEASNINPKGVLDYLHYHRAYKTDYELACMREAQKIAVAGHR-AAKEAFR------AGMSEFDINLAYLTATG------ 206 (443)
T ss_pred -CcccccChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH-HHHHHhh------cCCCHHHHHHHHHHHhC------
Confidence 010123455677888999999999999999999999999999 8999888 59999999876543321
Q ss_pred hhcccCCCCCCCCCeEEeCCCCCCCCCCcCCCc-ccccCCcceEEEeeceeeCCeEeeeEEEEEecCChHHHHHHHHHHH
Q 001468 259 VKLKAENVDICYPPIFQSGGEFDLKPSASSNDN-YLYYDSTSVIICAVGSRYNSYCSNVARTFLIDANTVQSKAYEVLLK 337 (1073)
Q Consensus 259 ~~~g~~~~~~~y~piV~SG~n~~l~~h~~~~dr-~L~~G~~dvI~vdlG~~y~GY~sditRT~~VgPs~eq~~~y~~lle 337 (1073)
.++ ..++|++||++|.|++. +|+.++++ .++.| |+|++|+|+.|+|||||+||||+.+|+++++++|+++++
T Consensus 207 --~~~--~~~~y~~iva~G~naa~-~H~~~~~~~~~~~G--d~vliD~Ga~~~GY~sDiTRTf~g~~~~~~~~ly~~v~~ 279 (443)
T PRK13607 207 --QRD--NDVPYGNIVALNEHAAV-LHYTKLDHQAPAEM--RSFLIDAGAEYNGYAADITRTYAAKEDNDFAALIKDVNK 279 (443)
T ss_pred --CCC--cCCCCCcEEEecCcceE-ecCCccCCCCCCCC--CEEEEEeeEEECCEEecceEEEecCCCHHHHHHHHHHHH
Confidence 122 35789999999999887 89988875 68899 999999999999999999999994478999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHH----hcCCc------------c-ccccCCccccccccccccCCCcc-------
Q 001468 338 AHEAAISALKSGNKVSAAYKAASTVVE----KDAPE------------L-AANLTRNAGTGIGLEFRESGLSL------- 393 (1073)
Q Consensus 338 a~~a~i~~lkPGvt~~dV~~aa~~~l~----~~Gp~------------l-~~~~~h~~GHgIGle~~E~p~~l------- 393 (1073)
||+++++++|||++++||+.++++++. +.|.. + ..+|+|++||+|||++||.+...
T Consensus 280 aq~aai~~ikPG~~~~dv~~aa~~~i~~~L~~~Gl~~g~~~~~~~~~g~~~~~f~HglGH~iGldvHd~~~~~~~~~~~~ 359 (443)
T PRK13607 280 EQLALIATMKPGVSYVDLHIQMHQRIAKLLRKFQIVTGLSEEAMVEQGITSPFFPHGLGHPLGLQVHDVAGFMQDDRGTH 359 (443)
T ss_pred HHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHhCCCceEecCCCccCccCcccccCCCccccccccc
Confidence 999999999999999999999987764 34410 1 24789999999999999985210
Q ss_pred --------cCCCCceecCCcEEEEeeccccccC--CC-----------CC---CCCCeeeEEEEEEEEEeCCCceeccc
Q 001468 394 --------NAKNDRILKAGMVFNVSLGFQNLQT--EN-----------KN---PKTQKFSVLLADTVIVGEKVPDIVTS 448 (1073)
Q Consensus 394 --------~~~~~~~L~~GMVf~IEpG~~~l~~--~~-----------~~---~~~~~~gvriEDTVlVte~G~evLT~ 448 (1073)
.-.+.++|++||||+||||+|..+. .. |. .-.+.||+||||+|+||++|+++||.
T Consensus 360 ~~~~~~~~~l~~~~~L~~GmV~TvEPGiY~~~~ll~~~~~~~~~~~in~~~i~~~~~~GGvRIED~vlVT~~G~e~Lt~ 438 (443)
T PRK13607 360 LAAPEKHPYLRCTRVLEPGMVLTIEPGLYFIDSLLAPLREGPFSKHFNWQKIDALKPFGGIRIEDNVVVHENGVENMTR 438 (443)
T ss_pred ccccccccccccCCcCCCCcEEEECCeeeeChhhhchhhhhhhhhhccHHHHHhhcCCCEEeecceEEEcCCCCeECCh
Confidence 0135689999999999999994320 00 11 11246899999999999999999997
No 13
>KOG2414 consensus Putative Xaa-Pro aminopeptidase [Amino acid transport and metabolism]
Probab=100.00 E-value=4.8e-44 Score=392.39 Aligned_cols=389 Identities=17% Similarity=0.260 Sum_probs=293.1
Q ss_pred ccCCHHHHHHHHHHHHHHHhccCCCCCCCccEEEEeCCC----CCCccccc-ccccceEeecCCcCCcEEEEEeC-C---
Q 001468 25 YAINLDNFSKRLKMLYSHWTEHNSDLWGDSNALAVATPP----VSEDLRYL-KSSALNVWLVGYEFPETIMVFLK-K--- 95 (1073)
Q Consensus 25 ~~i~~~~f~~Rl~rL~~~m~~~~~~~~~glDaLli~~g~----~~~~~~Y~-ks~al~~wLtGye~p~tlll~t~-~--- 95 (1073)
+.|+..+|..|+.+|.+.+.+. +++|+.+. ++...+|. +|++.++||||+..|++++++.+ +
T Consensus 60 Pgis~~Ey~~RR~rl~~ll~~~---------a~~il~sap~~~msg~ipY~f~Qd~df~YLtGc~EP~~vl~l~~~d~~s 130 (488)
T KOG2414|consen 60 PGISATEYKERRSRLMSLLPAN---------AMVILGSAPVKYMSGAIPYTFRQDNDFYYLTGCLEPDAVLLLLKGDERS 130 (488)
T ss_pred CCccHHHHHHHHHHHHHhCCcc---------cEEEEccCchhhhcCccceeeecCCCeEEEeccCCCCeeEEEeeccccc
Confidence 5699999999999999999883 34444444 35678888 89999999999999999888853 2
Q ss_pred -cEEEEEeCCccchHHHHHhhcccccceE--EEEEeCCCCCCCCChHHHHHHHhhhcccCCCCCCCEEEEeCCCC---Cc
Q 001468 96 -QIHFLCSQKKASLLEVIKKSAKEAVGIE--VVIHVKGKTDDGSGLMDKIFGAVNDQSKSGGQNSPVVGHISREA---PE 169 (1073)
Q Consensus 96 -~~~ll~s~kK~~~le~~~~~~~~~~~ve--i~~~~kd~~d~~~~~~~~l~~~Lk~~~~~~~~~~~rIGv~~kd~---~~ 169 (1073)
...+|..++ ..+.+.|.+.. .+.. +.+++.+.+ .....+...|.+. +.....|-...... ..
T Consensus 131 ~~~~lf~p~k-dP~~e~WeG~r---tG~~~a~~if~v~ea----~~~s~l~~~L~k~----~~~~~~i~~d~~ss~a~s~ 198 (488)
T KOG2414|consen 131 VAYDLFMPPK-DPTAELWEGPR---TGTDGASEIFGVDEA----YPLSGLAVFLPKM----SALLYKIWQDKASSKASSA 198 (488)
T ss_pred ceeeEecCCC-CccHHhhcCcc---ccchhhhhhhcchhh----cchhhHHHHHHHH----HhhhhhhhhhhccchhhhH
Confidence 246666554 55567776542 2222 112222222 2334444333321 00112233222110 11
Q ss_pred HHHHHHHHHHHhhcCceEEeCCcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCHHHHHHHHHH
Q 001468 170 GKLLETWNEKLKKANFALSDVSNGFSDLFAIKDDTELTNIKKAAFLSSSVMKQFVVPKLEKVIDEEKKVSHSSLMDETEK 249 (1073)
Q Consensus 170 g~~~~~l~~~l~~~~~e~vDvs~~l~~lR~VKd~~EI~~iR~Aa~ia~~a~~~~~~~~i~~iid~e~GvtE~eLa~~ie~ 249 (1073)
..++..+..... ..-.+..++.++.++|.||||.||++||.||.|++.++. ..+-.=+ +...|..|.+.++.
T Consensus 199 ~~~~~dl~~~~~-~~~~~~~~~~li~~lRlIKSpaEl~~Mr~a~~I~sq~~~-~~m~~sr------~~~~E~~l~a~~ey 270 (488)
T KOG2414|consen 199 LKNMQDLLGFQS-KSSTVRPVSNLIERLRLIKSPAELELMREACNIASQTFS-ETMFGSR------DFHNEAALSALLEY 270 (488)
T ss_pred HHHHHhhhhhcc-cCcccccHHHHHHHHHccCCHHHHHHHHHHhhhhhHHHH-HHHhhcc------CCcchhhHhhhhhh
Confidence 122333322211 133578899999999999999999999999999999776 3333333 48899999999999
Q ss_pred HHHccchhhhhcccCCCCCCCCCeEEeCCCCCCCCCCcCCCcccccCCcceEEEeeceeeCCeEeeeEEEEEec--CChH
Q 001468 250 AILEPARIKVKLKAENVDICYPPIFQSGGEFDLKPSASSNDNYLYYDSTSVIICAVGSRYNSYCSNVARTFLID--ANTV 327 (1073)
Q Consensus 250 ~l~~~gk~~~~~g~~~~~~~y~piV~SG~n~~l~~h~~~~dr~L~~G~~dvI~vdlG~~y~GY~sditRT~~Vg--Ps~e 327 (1073)
.++. .|++ ..+|+|+|+.|.|+.. .|+.-++..|.+| ++|++|.||.+.||+|||||||.+. =+..
T Consensus 271 e~r~-------rGad--~~AYpPVVAgG~na~t-IHY~~Nnq~l~d~--emVLvDaGcelgGYvSDITRTWP~sGkFs~~ 338 (488)
T KOG2414|consen 271 ECRR-------RGAD--RLAYPPVVAGGKNANT-IHYVRNNQLLKDD--EMVLVDAGCELGGYVSDITRTWPISGKFSDA 338 (488)
T ss_pred heee-------cCcc--ccccCCeeecCcccce-EEEeecccccCCC--cEEEEecCcccCceEccceeccCCCCccCcH
Confidence 8874 3554 6789999999999875 9999999999999 9999999999999999999999996 3999
Q ss_pred HHHHHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHhc----CC---------ccccccCCccccccccccccCCCc
Q 001468 328 QSKAYEVLLKAHEAAISALKS--GNKVSAAYKAASTVVEKD----AP---------ELAANLTRNAGTGIGLEFRESGLS 392 (1073)
Q Consensus 328 q~~~y~~llea~~a~i~~lkP--Gvt~~dV~~aa~~~l~~~----Gp---------~l~~~~~h~~GHgIGle~~E~p~~ 392 (1073)
|+++|++++.+|+.+|+.++| |.++.++|......+.+. |. ......+|++||-+|+++|+.|-
T Consensus 339 Qr~LYeavL~vq~ecik~c~~~~g~sL~~l~~~s~~Ll~~~Lk~lGI~kt~~ee~~~~~klcPHhVgHyLGmDVHD~p~- 417 (488)
T KOG2414|consen 339 QRDLYEAVLQVQEECIKYCKPSNGTSLSQLFERSNELLGQELKELGIRKTDREEMIQAEKLCPHHVGHYLGMDVHDCPT- 417 (488)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHhCcccchHHHHHhhhhcCCcccchhcCcccccCCC-
Confidence 999999999999999999999 999999999988766543 41 12235699999999999999984
Q ss_pred ccCCCCceecCCcEEEEeeccccccCCC-CCCCCCeeeEEEEEEEEEeCCCceecccccccchhhhc
Q 001468 393 LNAKNDRILKAGMVFNVSLGFQNLQTEN-KNPKTQKFSVLLADTVIVGEKVPDIVTSKSSKAVKDVA 458 (1073)
Q Consensus 393 l~~~~~~~L~~GMVf~IEpG~~~l~~~~-~~~~~~~~gvriEDTVlVte~G~evLT~~~pk~l~~I~ 458 (1073)
+ ..+.+|+|||||+||||+| +|... |+....+.|+||||.|+|+++|+++||..+||++.+|.
T Consensus 418 v--~r~~pL~pg~ViTIEPGvY-IP~d~d~P~~FrGIGiRIEDDV~i~edg~evLT~a~pKei~~ie 481 (488)
T KOG2414|consen 418 V--SRDIPLQPGMVITIEPGVY-IPEDDDPPEEFRGIGIRIEDDVAIGEDGPEVLTAACPKEIIEIE 481 (488)
T ss_pred C--CCCccCCCCceEEecCcee-cCccCCCchHhcCceEEeecceEeccCCceeehhcccCCHHHHH
Confidence 2 3568899999999999999 77543 55555679999999999999999999999999999885
No 14
>PRK07281 methionine aminopeptidase; Reviewed
Probab=100.00 E-value=8e-42 Score=379.53 Aligned_cols=241 Identities=14% Similarity=0.160 Sum_probs=210.8
Q ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCHHHHHHHHHHHHHccchhhhhcccCCCCCCCCCeEEeC
Q 001468 198 FAIKDDTELTNIKKAAFLSSSVMKQFVVPKLEKVIDEEKKVSHSSLMDETEKAILEPARIKVKLKAENVDICYPPIFQSG 277 (1073)
Q Consensus 198 R~VKd~~EI~~iR~Aa~ia~~a~~~~~~~~i~~iid~e~GvtE~eLa~~ie~~l~~~gk~~~~~g~~~~~~~y~piV~SG 277 (1073)
..|||++||++||+|++++.+++. ++.+.++ ||+||.+|++.++..+...|.+...+|.......|++++++|
T Consensus 2 ~~iKs~~EI~~mr~A~~i~~~~~~-~~~~~i~------pG~te~ei~~~~~~~~~~~g~~~~~~G~~~~~~~f~~~v~~G 74 (286)
T PRK07281 2 ITLKSAREIEAMDRAGDFLASIHI-GLRDLIK------PGVDMWEVEEYVRRRCKEENVLPLQIGVDGAMMDYPYATCCG 74 (286)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHH-HHHHHCc------CCCcHHHHHHHHHHHHHHcCCcccccCCCCcccCCCcceEEe
Confidence 579999999999999999999998 8888888 699999999999999886654433345443356899999999
Q ss_pred CCCCCCCCCcCCCcccccCCcceEEEeece---------------------------eeCCeEeeeEEEEEec-CChHHH
Q 001468 278 GEFDLKPSASSNDNYLYYDSTSVIICAVGS---------------------------RYNSYCSNVARTFLID-ANTVQS 329 (1073)
Q Consensus 278 ~n~~l~~h~~~~dr~L~~G~~dvI~vdlG~---------------------------~y~GY~sditRT~~Vg-Ps~eq~ 329 (1073)
.|... +|+.|+++.|++| |+|++|+|+ .|+|||+|++|||++| |+++|+
T Consensus 75 ~n~~~-~H~~p~~~~l~~G--d~v~iD~g~~~~~~~y~~d~~~~~~~~~~~~~~~~~~~~gy~~D~~rT~~vG~~~~~~~ 151 (286)
T PRK07281 75 LNDEV-AHAFPRHYILKEG--DLLKVDMVLSEPLDKSIVDVSKLNFDNVEQMKKYTESYRGGLADSCWAYAVGTPSDEVK 151 (286)
T ss_pred ccccc-cCCCCCCcCcCCC--CEEEEEecccccccccccccccccccccccccccccccCCEEeeeEEEEECCCCCHHHH
Confidence 99987 9999999999999 999999997 4999999999999998 899999
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCccccccCCccccccccccccCCCcc---cCCCCceecCCcE
Q 001468 330 KAYEVLLKAHEAAISALKSGNKVSAAYKAASTVVEKDAPELAANLTRNAGTGIGLEFRESGLSL---NAKNDRILKAGMV 406 (1073)
Q Consensus 330 ~~y~~llea~~a~i~~lkPGvt~~dV~~aa~~~l~~~Gp~l~~~~~h~~GHgIGle~~E~p~~l---~~~~~~~L~~GMV 406 (1073)
++|+++++||.++++++|||++++||++++++++++.| |.. +.|.+|||||+++||.|.+. .+++..+|++|||
T Consensus 152 ~l~~~~~ea~~~ai~~~kpG~~~~di~~a~~~~~~~~G--~~~-~~~~~GHGIGl~~hE~P~i~~~~~~~~~~~Le~GMV 228 (286)
T PRK07281 152 NLMDVTKEAMYRGIEQAVVGNRIGDIGAAIQEYAESRG--YGV-VRDLVGHGVGPTMHEEPMVPNYGTAGRGLRLREGMV 228 (286)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcC--Ccc-CCCeeeeeCCCccCCCCcCCCcccCCCCCEECCCCE
Confidence 99999999999999999999999999999999999999 775 78999999999999999532 2567789999999
Q ss_pred EEEeeccccccC--------CCCC--CCCCeeeEEEEEEEEEeCCCceecccccccc
Q 001468 407 FNVSLGFQNLQT--------ENKN--PKTQKFSVLLADTVIVGEKVPDIVTSKSSKA 453 (1073)
Q Consensus 407 f~IEpG~~~l~~--------~~~~--~~~~~~gvriEDTVlVte~G~evLT~~~pk~ 453 (1073)
|+|||++| +.. ..|. ..++.+|+++||||+||++|+++||. .+++
T Consensus 229 ~tiEPgiy-~~~~~~~~~~~~gw~~~~~~g~~gvr~EdtvlVT~~G~e~LT~-~~~~ 283 (286)
T PRK07281 229 LTIEPMIN-TGTWEIDTDMKTGWAHKTLDGGLSCQYEHQFVITKDGPVILTS-QGEE 283 (286)
T ss_pred EEECCeeE-cCCcceecccCCCceEEecCCCcEEEeccEEEEeCCcceECCC-CCcc
Confidence 99999998 421 1243 34677899999999999999999996 5543
No 15
>PRK12897 methionine aminopeptidase; Reviewed
Probab=100.00 E-value=3.8e-41 Score=368.71 Aligned_cols=233 Identities=17% Similarity=0.161 Sum_probs=203.5
Q ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCHHHHHHHHHHHHHccchhhhhcccCCCCCCCCCeEEeC
Q 001468 198 FAIKDDTELTNIKKAAFLSSSVMKQFVVPKLEKVIDEEKKVSHSSLMDETEKAILEPARIKVKLKAENVDICYPPIFQSG 277 (1073)
Q Consensus 198 R~VKd~~EI~~iR~Aa~ia~~a~~~~~~~~i~~iid~e~GvtE~eLa~~ie~~l~~~gk~~~~~g~~~~~~~y~piV~SG 277 (1073)
..||||+||++||+||++++.++. ++.+.++ +|+||.||++.++..+...|... ......+|+++|++|
T Consensus 2 ~~iKs~~EI~~~r~A~~i~~~~~~-~~~~~~~------~G~tE~el~~~~~~~~~~~G~~~----~~~~~~~~~~~i~~g 70 (248)
T PRK12897 2 ITIKTKNEIDLMHESGKLLASCHR-EIAKIMK------PGITTKEINTFVEAYLEKHGATS----EQKGYNGYPYAICAS 70 (248)
T ss_pred ceeCCHHHHHHHHHHHHHHHHHHH-HHHhhcC------CCCcHHHHHHHHHHHHHHcCCcc----cccccCCCCcceEec
Confidence 479999999999999999999999 8888888 69999999999999997643211 000134688889999
Q ss_pred CCCCCCCCCcCCCcccccCCcceEEEeeceeeCCeEeeeEEEEEec-CChHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Q 001468 278 GEFDLKPSASSNDNYLYYDSTSVIICAVGSRYNSYCSNVARTFLID-ANTVQSKAYEVLLKAHEAAISALKSGNKVSAAY 356 (1073)
Q Consensus 278 ~n~~l~~h~~~~dr~L~~G~~dvI~vdlG~~y~GY~sditRT~~Vg-Ps~eq~~~y~~llea~~a~i~~lkPGvt~~dV~ 356 (1073)
.|..+ +|+.|+++.|+.| |+|++|+|+.|.|||||++|||++| |+++|+++|+++++|+++++++++||++++||+
T Consensus 71 ~n~~~-~H~~p~~~~l~~G--d~V~iD~g~~~~GY~sD~tRT~~vG~~s~~~~~~~~~~~~a~~~~i~~~kpG~~~~dv~ 147 (248)
T PRK12897 71 VNDEM-CHAFPADVPLTEG--DIVTIDMVVNLNGGLSDSAWTYRVGKVSDEAEKLLLVAENALYKGIDQAVIGNRVGDIG 147 (248)
T ss_pred cCCEe-ecCCCCCcccCCC--CEEEEEeeEEECCEEEEEEEEEEcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCccchHH
Confidence 99886 8999999999999 9999999999999999999999999 899999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCccccccCCccccccccccccCCCcc---cCCCCceecCCcEEEEeeccccccC-------CCCC--CC
Q 001468 357 KAASTVVEKDAPELAANLTRNAGTGIGLEFRESGLSL---NAKNDRILKAGMVFNVSLGFQNLQT-------ENKN--PK 424 (1073)
Q Consensus 357 ~aa~~~l~~~Gp~l~~~~~h~~GHgIGle~~E~p~~l---~~~~~~~L~~GMVf~IEpG~~~l~~-------~~~~--~~ 424 (1073)
.++.+++++.| |.. +.|.+|||||+.+||.|.+. .+++..+|++||||++|||+| +.. +.|. ..
T Consensus 148 ~a~~~~~~~~g--~~~-~~~~~GHgiGl~~hE~P~i~~~~~~~~~~~l~~Gmv~tiEP~~~-~~~~~~~~~~~~~~~~~~ 223 (248)
T PRK12897 148 YAIESYVANEG--FSV-ARDFTGHGIGKEIHEEPAIFHFGKQGQGPELQEGMVITIEPIVN-VGMRYSKVDLNGWTARTM 223 (248)
T ss_pred HHHHHHHHHcC--Ccc-CCCeEECccCCcccCCCccCCCCCCCCCCCcCCCCEEEECCeEe-cCCCceEECCCCcEEEcC
Confidence 99999999999 763 47899999999999999643 245678999999999999998 311 3343 24
Q ss_pred CCeeeEEEEEEEEEeCCCceeccc
Q 001468 425 TQKFSVLLADTVIVGEKVPDIVTS 448 (1073)
Q Consensus 425 ~~~~gvriEDTVlVte~G~evLT~ 448 (1073)
++.+|+++||||+||++|+++||.
T Consensus 224 ~g~~g~r~edtv~Vt~~G~e~lt~ 247 (248)
T PRK12897 224 DGKLSAQYEHTIAITKDGPIILTK 247 (248)
T ss_pred CCCeEeecceEEEEeCCccEEeec
Confidence 677999999999999999999995
No 16
>PRK12318 methionine aminopeptidase; Provisional
Probab=100.00 E-value=1.8e-40 Score=370.46 Aligned_cols=244 Identities=18% Similarity=0.217 Sum_probs=205.2
Q ss_pred cccccccc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCHHHHHHHHHHHHHccchhhhhcccCCCCCCC
Q 001468 192 NGFSDLFA-IKDDTELTNIKKAAFLSSSVMKQFVVPKLEKVIDEEKKVSHSSLMDETEKAILEPARIKVKLKAENVDICY 270 (1073)
Q Consensus 192 ~~l~~lR~-VKd~~EI~~iR~Aa~ia~~a~~~~~~~~i~~iid~e~GvtE~eLa~~ie~~l~~~gk~~~~~g~~~~~~~y 270 (1073)
+.++.++. |||++||++||+|+++++.+|. ++.+.++ +|+||.||++.++..+...|.....++. ...+|
T Consensus 34 ~~~~~~~i~IKs~~EIe~~R~Aa~I~~~a~~-a~~~~ir------pG~tE~Eiaa~~~~~~~~~G~~~~~~~~--~~~~f 104 (291)
T PRK12318 34 LYASQYDIIIKTPEQIEKIRKACQVTARILD-ALCEAAK------EGVTTNELDELSRELHKEYNAIPAPLNY--GSPPF 104 (291)
T ss_pred hccCCCceEECCHHHHHHHHHHHHHHHHHHH-HHHHhcc------CCCCHHHHHHHHHHHHHHcCCCcccccc--CCCCC
Confidence 34455665 9999999999999999999999 8999998 5999999999888777654322111111 13468
Q ss_pred CCeEEeCCCCCCCCCCcCCCcccccCCcceEEEeeceeeCCeEeeeEEEEEec-CChHHHHHHHHHHHHHHHHHHHcCCC
Q 001468 271 PPIFQSGGEFDLKPSASSNDNYLYYDSTSVIICAVGSRYNSYCSNVARTFLID-ANTVQSKAYEVLLKAHEAAISALKSG 349 (1073)
Q Consensus 271 ~piV~SG~n~~l~~h~~~~dr~L~~G~~dvI~vdlG~~y~GY~sditRT~~Vg-Ps~eq~~~y~~llea~~a~i~~lkPG 349 (1073)
++++++|.|..+ +|+.|++++|+.| |+|++|+|+.|.||++|++|||++| |+++|+++|++++++++++++++|||
T Consensus 105 ~~~v~~g~n~~~-~H~~p~~~~l~~G--D~V~vD~g~~~~GY~aDitRT~~vG~~~~~~~~~~~~~~~a~~~~i~~~rpG 181 (291)
T PRK12318 105 PKTICTSLNEVI-CHGIPNDIPLKNG--DIMNIDVSCIVDGYYGDCSRMVMIGEVSEIKKKVCQASLECLNAAIAILKPG 181 (291)
T ss_pred CcceEeecccee-ecCCCCCCccCCC--CEEEEEEeEEECcEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 889999999876 8999999999999 9999999999999999999999999 89999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhcCCccccccCCccccccccccccCCCccc--CCCCceecCCcEEEEeeccccccC--------C
Q 001468 350 NKVSAAYKAASTVVEKDAPELAANLTRNAGTGIGLEFRESGLSLN--AKNDRILKAGMVFNVSLGFQNLQT--------E 419 (1073)
Q Consensus 350 vt~~dV~~aa~~~l~~~Gp~l~~~~~h~~GHgIGle~~E~p~~l~--~~~~~~L~~GMVf~IEpG~~~l~~--------~ 419 (1073)
+++++|++++.+++++.| +.. ..|.+|||||+++||.|.+.+ +.+..+|++||||+|||++| ++. .
T Consensus 182 ~~~~dv~~a~~~~~~~~G--~~~-~~~~~GHgIGl~~hE~P~i~~~~~~~~~~L~~GMV~~iEP~i~-~~~~~g~~~~~~ 257 (291)
T PRK12318 182 IPLYEIGEVIENCADKYG--FSV-VDQFVGHGVGIKFHENPYVPHHRNSSKIPLAPGMIFTIEPMIN-VGKKEGVIDPIN 257 (291)
T ss_pred CCHHHHHHHHHHHHHHcC--Ccc-CCCcccCCcCccccCCCcccCcCCCCCCEeCCCCEEEECCEEE-cCCCceEEecCC
Confidence 999999999999999999 543 357799999999999996433 35568999999999999998 532 1
Q ss_pred CCC--CCCCeeeEEEEEEEEEeCCCceeccccccc
Q 001468 420 NKN--PKTQKFSVLLADTVIVGEKVPDIVTSKSSK 452 (1073)
Q Consensus 420 ~~~--~~~~~~gvriEDTVlVte~G~evLT~~~pk 452 (1073)
.|. ..++..++++||||+||++|+|+||. +|+
T Consensus 258 ~~~~~~~~g~~~~~~edtv~VTe~G~e~LT~-~~~ 291 (291)
T PRK12318 258 HWEARTCDNQPSAQWEHTILITETGYEILTL-LDK 291 (291)
T ss_pred CcEEEecCCCeeeeeeeEEEEcCCcceeCCC-CCC
Confidence 122 23455778899999999999999997 764
No 17
>TIGR00500 met_pdase_I methionine aminopeptidase, type I. Methionine aminopeptidase is a cobalt-binding enzyme. Bacterial and organellar examples (type I) differ from eukaroytic and archaeal (type II) examples in lacking a region of approximately 60 amino acids between the 4th and 5th cobalt-binding ligands. This model describes type I. The role of this protein in general is to produce the mature form of cytosolic proteins by removing the N-terminal methionine.
Probab=100.00 E-value=3.6e-40 Score=360.53 Aligned_cols=232 Identities=22% Similarity=0.270 Sum_probs=201.1
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCHHHHHHHHHHHHHccchhhhhcccCCCCCCCCCeEEeCC
Q 001468 199 AIKDDTELTNIKKAAFLSSSVMKQFVVPKLEKVIDEEKKVSHSSLMDETEKAILEPARIKVKLKAENVDICYPPIFQSGG 278 (1073)
Q Consensus 199 ~VKd~~EI~~iR~Aa~ia~~a~~~~~~~~i~~iid~e~GvtE~eLa~~ie~~l~~~gk~~~~~g~~~~~~~y~piV~SG~ 278 (1073)
+|||++||++||+|+++++.+|. ++.+.++ +|+||.||++.+...+...|... +......|++++++|.
T Consensus 2 ~iKs~~Ei~~~r~A~~i~~~~~~-~~~~~i~------~G~tE~el~~~~~~~~~~~G~~~----~~~~~~~~~~~~~~~~ 70 (247)
T TIGR00500 2 SLKSPDEIEKIRKAGRLAAEVLE-ELEREVK------PGVSTKELDRIAKDFIEKHGAKP----AFLGYYGFPGSVCISV 70 (247)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHH-HHHHhcc------CCCCHHHHHHHHHHHHHHCCCCc----cccCCCCCCceeEecc
Confidence 79999999999999999999999 8888888 59999999999998887643211 0011236788899999
Q ss_pred CCCCCCCCcCCCcccccCCcceEEEeeceeeCCeEeeeEEEEEec-CChHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHH
Q 001468 279 EFDLKPSASSNDNYLYYDSTSVIICAVGSRYNSYCSNVARTFLID-ANTVQSKAYEVLLKAHEAAISALKSGNKVSAAYK 357 (1073)
Q Consensus 279 n~~l~~h~~~~dr~L~~G~~dvI~vdlG~~y~GY~sditRT~~Vg-Ps~eq~~~y~~llea~~a~i~~lkPGvt~~dV~~ 357 (1073)
|... +|+.|+++.|+.| |+|++|+|+.|+|||+|++|||++| |+++|+++|++++++++++++++|||+++++|++
T Consensus 71 n~~~-~H~~~~~~~l~~G--d~v~iD~g~~~~gY~aD~~RT~~vG~~~~~~~~~~~~~~~a~~~~~~~~kpG~~~~~v~~ 147 (247)
T TIGR00500 71 NEVV-IHGIPDKKVLKDG--DIVNIDVGVIYDGYHGDTAKTFLVGKISPEAEKLLECTEESLYKAIEEAKPGNRIGEIGA 147 (247)
T ss_pred ccEE-EecCCCCcccCCC--CEEEEEEEEEECCEEEEEEEEEEcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 9765 8999999999999 9999999999999999999999998 7999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCccccccCCccccccccccccCCCccc---CCCCceecCCcEEEEeeccccccC-------CCCC--CCC
Q 001468 358 AASTVVEKDAPELAANLTRNAGTGIGLEFRESGLSLN---AKNDRILKAGMVFNVSLGFQNLQT-------ENKN--PKT 425 (1073)
Q Consensus 358 aa~~~l~~~Gp~l~~~~~h~~GHgIGle~~E~p~~l~---~~~~~~L~~GMVf~IEpG~~~l~~-------~~~~--~~~ 425 (1073)
++++++++.| +.. +.+.+|||||+.+||.|.+.+ +.++.+|++||||+|||++| ++. +.|. .++
T Consensus 148 ~~~~~~~~~g--~~~-~~~~~GHgiG~~~~e~p~i~~~~~~~~~~~l~~gmv~~iEp~i~-~~~~~~~~~~~~~~~~~~~ 223 (247)
T TIGR00500 148 AIQKYAEAKG--FSV-VREYCGHGIGRKFHEEPQIPNYGKKFTNVRLKEGMVFTIEPMVN-TGTEEITTAADGWTVKTKD 223 (247)
T ss_pred HHHHHHHHcC--CEe-ccCccCCccCcccCCCCccCCcCcCCCCCEecCCCEEEEeeEEE-cCCCcEEECCCCCEEEccC
Confidence 9999999999 554 457799999999999995332 45689999999999999998 321 1232 345
Q ss_pred CeeeEEEEEEEEEeCCCceeccc
Q 001468 426 QKFSVLLADTVIVGEKVPDIVTS 448 (1073)
Q Consensus 426 ~~~gvriEDTVlVte~G~evLT~ 448 (1073)
+.+|+++||||+||++|+++||.
T Consensus 224 ~~~g~ried~v~Vt~~G~e~Lt~ 246 (247)
T TIGR00500 224 GSLSAQFEHTIVITDNGPEILTE 246 (247)
T ss_pred CCeEEEEeEEEEEcCCccEEccC
Confidence 67999999999999999999985
No 18
>PRK05716 methionine aminopeptidase; Validated
Probab=100.00 E-value=4.6e-40 Score=360.50 Aligned_cols=238 Identities=21% Similarity=0.262 Sum_probs=205.4
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCHHHHHHHHHHHHHccchhhhhcccCCCCCCCCCeEEe
Q 001468 197 LFAIKDDTELTNIKKAAFLSSSVMKQFVVPKLEKVIDEEKKVSHSSLMDETEKAILEPARIKVKLKAENVDICYPPIFQS 276 (1073)
Q Consensus 197 lR~VKd~~EI~~iR~Aa~ia~~a~~~~~~~~i~~iid~e~GvtE~eLa~~ie~~l~~~gk~~~~~g~~~~~~~y~piV~S 276 (1073)
+.+|||++||++||+|++++..++. ++.+.++ +|+||.+|++.+...+...|.. ... ....+|++++++
T Consensus 2 ~~~iKs~~Ei~~~r~A~~i~~~~~~-~a~~~i~------pG~se~ela~~~~~~~~~~G~~---~~~-~~~~~~~~~~~~ 70 (252)
T PRK05716 2 AITIKTPEEIEKMRVAGRLAAEVLD-EIEPHVK------PGVTTKELDRIAEEYIRDQGAI---PAP-LGYHGFPKSICT 70 (252)
T ss_pred ceeeCCHHHHHHHHHHHHHHHHHHH-HHHHHcc------CCCCHHHHHHHHHHHHHHCCCE---ecc-cCCCCCCcCeEe
Confidence 5689999999999999999999998 8999988 5999999999998888754311 000 012467788999
Q ss_pred CCCCCCCCCCcCCCcccccCCcceEEEeeceeeCCeEeeeEEEEEec-CChHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Q 001468 277 GGEFDLKPSASSNDNYLYYDSTSVIICAVGSRYNSYCSNVARTFLID-ANTVQSKAYEVLLKAHEAAISALKSGNKVSAA 355 (1073)
Q Consensus 277 G~n~~l~~h~~~~dr~L~~G~~dvI~vdlG~~y~GY~sditRT~~Vg-Ps~eq~~~y~~llea~~a~i~~lkPGvt~~dV 355 (1073)
|.|+.. +|+.++++.|+.| |+|++|+|+.|.||++|++||+++| |+++|+++|++++++++++++++|||++++||
T Consensus 71 g~~~~~-~h~~~~~~~l~~G--d~v~id~g~~~~gY~~d~~RT~~vG~~~~~~~~~~~~~~~~~~~~~~~~~pG~~~~dv 147 (252)
T PRK05716 71 SVNEVV-CHGIPSDKVLKEG--DIVNIDVTVIKDGYHGDTSRTFGVGEISPEDKRLCEVTKEALYLGIAAVKPGARLGDI 147 (252)
T ss_pred ccccee-ecCCCCCcccCCC--CEEEEEEEEEECCEEEEeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 999765 8999999999999 9999999999999999999999998 89999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCccccccCCccccccccccccCCCcc---cCCCCceecCCcEEEEeeccccccC-------CCCC--C
Q 001468 356 YKAASTVVEKDAPELAANLTRNAGTGIGLEFRESGLSL---NAKNDRILKAGMVFNVSLGFQNLQT-------ENKN--P 423 (1073)
Q Consensus 356 ~~aa~~~l~~~Gp~l~~~~~h~~GHgIGle~~E~p~~l---~~~~~~~L~~GMVf~IEpG~~~l~~-------~~~~--~ 423 (1073)
++++.+++++.| +.. +.+.+|||||+.+||.|.++ .++++.+|++||||+|||++| ++. ..|. .
T Consensus 148 ~~~~~~~~~~~g--~~~-~~~~~GHgiG~~~~e~p~~~~~~~~~~~~~le~Gmv~~vEp~i~-~~~~~~~~~~~~~~~~~ 223 (252)
T PRK05716 148 GHAIQKYAEAEG--FSV-VREYCGHGIGRKFHEEPQIPHYGAPGDGPVLKEGMVFTIEPMIN-AGKREVKTLKDGWTVVT 223 (252)
T ss_pred HHHHHHHHHHcC--Cee-ecCccccccCCccCCCCccCcCCCCCCCCEecCCCEEEEccEEE-cCCCceEEcCCCCEEEc
Confidence 999999999999 554 46779999999999999643 457789999999999999998 421 1232 3
Q ss_pred CCCeeeEEEEEEEEEeCCCceecccccccc
Q 001468 424 KTQKFSVLLADTVIVGEKVPDIVTSKSSKA 453 (1073)
Q Consensus 424 ~~~~~gvriEDTVlVte~G~evLT~~~pk~ 453 (1073)
+++.+|+++||||+||++|+++||. .|++
T Consensus 224 ~~g~~g~~~ed~v~Vt~~G~e~Lt~-~~~~ 252 (252)
T PRK05716 224 KDGSLSAQYEHTVAVTEDGPEILTL-RPEE 252 (252)
T ss_pred cCCCcEEeeeeEEEEcCCccEEeeC-CCCC
Confidence 4678999999999999999999997 7753
No 19
>PRK12896 methionine aminopeptidase; Reviewed
Probab=100.00 E-value=3.8e-39 Score=353.85 Aligned_cols=235 Identities=18% Similarity=0.244 Sum_probs=204.3
Q ss_pred cccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCHHHHHHHHHHHHHccchhhhhcccCCCCCCCCCeEE
Q 001468 196 DLFAIKDDTELTNIKKAAFLSSSVMKQFVVPKLEKVIDEEKKVSHSSLMDETEKAILEPARIKVKLKAENVDICYPPIFQ 275 (1073)
Q Consensus 196 ~lR~VKd~~EI~~iR~Aa~ia~~a~~~~~~~~i~~iid~e~GvtE~eLa~~ie~~l~~~gk~~~~~g~~~~~~~y~piV~ 275 (1073)
++++|||++||++||+|+++++.++. ++.+.++ +|+||.+|++.+.+.+...|... ......+|+++++
T Consensus 6 ~~~~vKs~~Ei~~~r~a~~i~~~~~~-~~~~~i~------pG~te~el~~~~~~~~~~~G~~~----~~~~~~~~~~~~~ 74 (255)
T PRK12896 6 RGMEIKSPRELEKMRKIGRIVATALK-EMGKAVE------PGMTTKELDRIAEKRLEEHGAIP----SPEGYYGFPGSTC 74 (255)
T ss_pred CceeECCHHHHHHHHHHHHHHHHHHH-HHHhhcc------CCCCHHHHHHHHHHHHHHCCCEe----CcccCCCCCcceE
Confidence 56789999999999999999999999 8888888 59999999999998887543110 1111346888899
Q ss_pred eCCCCCCCCCCcCCCcccccCCcceEEEeeceeeCCeEeeeEEEEEec-CChHHHHHHHHHHHHHHHHHHHcCCCCCHHH
Q 001468 276 SGGEFDLKPSASSNDNYLYYDSTSVIICAVGSRYNSYCSNVARTFLID-ANTVQSKAYEVLLKAHEAAISALKSGNKVSA 354 (1073)
Q Consensus 276 SG~n~~l~~h~~~~dr~L~~G~~dvI~vdlG~~y~GY~sditRT~~Vg-Ps~eq~~~y~~llea~~a~i~~lkPGvt~~d 354 (1073)
+|.|..+ +|+.|+++.|+.| |+|++|+|+.|.||++|++|||++| |+++|+++|+++++++.++++++|||+++++
T Consensus 75 ~~~n~~~-~h~~p~~~~l~~G--d~v~iD~g~~~~gY~aD~~RT~~vG~~~~~~~~~~~~~~~a~~~~~~~~kpG~~~~~ 151 (255)
T PRK12896 75 ISVNEEV-AHGIPGPRVIKDG--DLVNIDVSAYLDGYHGDTGITFAVGPVSEEAEKLCRVAEEALWAGIKQVKAGRPLND 151 (255)
T ss_pred ecCCCee-EecCCCCccCCCC--CEEEEEEeEEECcEEEeeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 9999876 8999999999999 9999999999999999999999998 7999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCccccccCCccccccccccccCCCcc----cCCCCceecCCcEEEEeeccccccC-------CCCC-
Q 001468 355 AYKAASTVVEKDAPELAANLTRNAGTGIGLEFRESGLSL----NAKNDRILKAGMVFNVSLGFQNLQT-------ENKN- 422 (1073)
Q Consensus 355 V~~aa~~~l~~~Gp~l~~~~~h~~GHgIGle~~E~p~~l----~~~~~~~L~~GMVf~IEpG~~~l~~-------~~~~- 422 (1073)
|++++.+++++.| +.. +.|.+|||||+.+||.|..+ .++++.+|++||||+|||+++ +.. ..|.
T Consensus 152 v~~~~~~~~~~~G--~~~-~~~~~GHgiG~~~he~p~~~~~~~~~~~~~~le~GmV~~iEp~i~-~g~~~~~~~~~~~~~ 227 (255)
T PRK12896 152 IGRAIEDFAKKNG--YSV-VRDLTGHGVGRSLHEEPSVILTYTDPLPNRLLRPGMTLAVEPFLN-LGAKDAETLDDGWTV 227 (255)
T ss_pred HHHHHHHHHHHcC--CEe-ccCcccCCcCcccccCCCccccCCCCCCCCEecCCcEEEEeceEE-cCCCceEEcCCCCEE
Confidence 9999999999999 543 57889999999999999533 256789999999999999997 221 2243
Q ss_pred -CCCCeeeEEEEEEEEEeCCCceeccc
Q 001468 423 -PKTQKFSVLLADTVIVGEKVPDIVTS 448 (1073)
Q Consensus 423 -~~~~~~gvriEDTVlVte~G~evLT~ 448 (1073)
..++.+|+++||||+||++|+++||.
T Consensus 228 ~~~~~~~~~~~edtv~vt~~G~e~Lt~ 254 (255)
T PRK12896 228 VTPDKSLSAQFEHTVVVTRDGPEILTD 254 (255)
T ss_pred EecCCCeEEEEEEEEEEcCCcceecCC
Confidence 35788999999999999999999995
No 20
>cd01090 Creatinase Creatine amidinohydrolase. E.C.3.5.3.3. Hydrolyzes creatine to sarcosine and urea.
Probab=100.00 E-value=4.3e-39 Score=348.10 Aligned_cols=221 Identities=17% Similarity=0.185 Sum_probs=193.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCHHHHHHHHHHHHHccchhhhhcccCCCC-CCCCCeEEeCCCCCCCC
Q 001468 206 LTNIKKAAFLSSSVMKQFVVPKLEKVIDEEKKVSHSSLMDETEKAILEPARIKVKLKAENVD-ICYPPIFQSGGEFDLKP 284 (1073)
Q Consensus 206 I~~iR~Aa~ia~~a~~~~~~~~i~~iid~e~GvtE~eLa~~ie~~l~~~gk~~~~~g~~~~~-~~y~piV~SG~n~~l~~ 284 (1073)
|++||+|+++++.+|. ++.+.++ ||+||.||++.+...+...+.. +..... ..+.|+|+||.|... +
T Consensus 1 I~~ir~Aa~i~d~~~~-~~~~~i~------pG~tE~ei~a~~~~~~~~~ga~----~~~~~~~~~~~~~v~~G~~~~~-~ 68 (228)
T cd01090 1 IALIRHGARIADIGGA-AVVEAIR------EGVPEYEVALAGTQAMVREIAK----TFPEVELMDTWTWFQSGINTDG-A 68 (228)
T ss_pred CHHHHHHHHHHHHHHH-HHHHHhc------CCCCHHHHHHHHHHHHHHcCCc----cCCcccccCcceEEEeeccccc-c
Confidence 5799999999999999 8899898 6999999999998888653211 011000 112378999999886 9
Q ss_pred CCcCCCcccccCCcceEEEeeceeeCCeEeeeEEEEEec-CChHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 001468 285 SASSNDNYLYYDSTSVIICAVGSRYNSYCSNVARTFLID-ANTVQSKAYEVLLKAHEAAISALKSGNKVSAAYKAASTVV 363 (1073)
Q Consensus 285 h~~~~dr~L~~G~~dvI~vdlG~~y~GY~sditRT~~Vg-Ps~eq~~~y~~llea~~a~i~~lkPGvt~~dV~~aa~~~l 363 (1073)
|+.++++.|++| |+|++|+|++|+|||+|++|||++| |+++|+++|+++++|++++++++|||+++++|++++++++
T Consensus 69 H~~~~~r~l~~G--D~v~~d~g~~~~GY~ad~~RT~~vG~~~~~~~~~~~~~~ea~~~~~~~~rpG~~~~~v~~a~~~~~ 146 (228)
T cd01090 69 HNPVTNRKVQRG--DILSLNCFPMIAGYYTALERTLFLDEVSDAHLKIWEANVAVHERGLELIKPGARCKDIAAELNEMY 146 (228)
T ss_pred CCCCCCcccCCC--CEEEEEEeEEECCEeeeeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Confidence 999999999999 9999999999999999999999998 8999999999999999999999999999999999999999
Q ss_pred HhcCCccccccCCccccccccccccCCC----cccCCCCceecCCcEEEEeeccccccCCCCCCCCCeeeEEEEEEEEEe
Q 001468 364 EKDAPELAANLTRNAGTGIGLEFRESGL----SLNAKNDRILKAGMVFNVSLGFQNLQTENKNPKTQKFSVLLADTVIVG 439 (1073)
Q Consensus 364 ~~~Gp~l~~~~~h~~GHgIGle~~E~p~----~l~~~~~~~L~~GMVf~IEpG~~~l~~~~~~~~~~~~gvriEDTVlVt 439 (1073)
+++| |..++.|++|||||+.+||.|. .+..+++.+|++||||+|||++| ++. ..++.+|+++||||+||
T Consensus 147 ~~~G--~~~~~~~~~GHgiGl~~he~~~~~g~~~~~~~~~~Le~GMV~~iEP~i~-~~~----~~~g~gG~ried~v~Vt 219 (228)
T cd01090 147 REHD--LLRYRTFGYGHSFGVLSHYYGREAGLELREDIDTVLEPGMVVSMEPMIM-LPE----GQPGAGGYREHDILVIN 219 (228)
T ss_pred HHcC--CCcccccccCcccccccccCCCccccccCCCCCCccCCCCEEEECCEEe-ecc----cCCCCcEEEeeeEEEEC
Confidence 9999 9999999999999999999862 35667789999999999999999 431 01367899999999999
Q ss_pred CCCceecc
Q 001468 440 EKVPDIVT 447 (1073)
Q Consensus 440 e~G~evLT 447 (1073)
++|+++||
T Consensus 220 ~~G~e~Lt 227 (228)
T cd01090 220 ENGAENIT 227 (228)
T ss_pred CCccccCc
Confidence 99999998
No 21
>PLN03158 methionine aminopeptidase; Provisional
Probab=100.00 E-value=9.1e-39 Score=367.85 Aligned_cols=250 Identities=14% Similarity=0.195 Sum_probs=213.5
Q ss_pred ccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCHHHHHHHHHHHHHccchhhhhcccCCCCCCCCC
Q 001468 193 GFSDLFAIKDDTELTNIKKAAFLSSSVMKQFVVPKLEKVIDEEKKVSHSSLMDETEKAILEPARIKVKLKAENVDICYPP 272 (1073)
Q Consensus 193 ~l~~lR~VKd~~EI~~iR~Aa~ia~~a~~~~~~~~i~~iid~e~GvtE~eLa~~ie~~l~~~gk~~~~~g~~~~~~~y~p 272 (1073)
.+...|+|||++||+.||+|++++..+|. ++.+.++ +|+|+.+|++.+...+...|.+...+ .+..|+.
T Consensus 130 ~~~~~~~IKsp~EIe~mR~A~~ia~~al~-~a~~~ir------pGvTe~EI~~~v~~~~~~~Ga~ps~l----~y~~fp~ 198 (396)
T PLN03158 130 DLQHSVEIKTPEQIQRMRETCRIAREVLD-AAARAIK------PGVTTDEIDRVVHEATIAAGGYPSPL----NYHFFPK 198 (396)
T ss_pred ccccceeeCCHHHHHHHHHHHHHHHHHHH-HHHHHcc------CCCCHHHHHHHHHHHHHHcCCccccc----cccCCCc
Confidence 45678999999999999999999999999 8999998 59999999999999987654332111 1346788
Q ss_pred eEEeCCCCCCCCCCcCCCcccccCCcceEEEeeceeeCCeEeeeEEEEEec-CChHHHHHHHHHHHHHHHHHHHcCCCCC
Q 001468 273 IFQSGGEFDLKPSASSNDNYLYYDSTSVIICAVGSRYNSYCSNVARTFLID-ANTVQSKAYEVLLKAHEAAISALKSGNK 351 (1073)
Q Consensus 273 iV~SG~n~~l~~h~~~~dr~L~~G~~dvI~vdlG~~y~GY~sditRT~~Vg-Ps~eq~~~y~~llea~~a~i~~lkPGvt 351 (1073)
++++|.|..+ +|+.|++++|+.| |+|.+|+|+.|+||++|++|||+|| ++++|+++|++++++++++++++|||++
T Consensus 199 svcts~N~~i-~Hgip~~r~L~~G--DiV~iDvg~~~~GY~aD~tRT~~VG~~~~e~~~l~e~~~eal~~aI~~vkPGv~ 275 (396)
T PLN03158 199 SCCTSVNEVI-CHGIPDARKLEDG--DIVNVDVTVYYKGCHGDLNETFFVGNVDEASRQLVKCTYECLEKAIAIVKPGVR 275 (396)
T ss_pred eeeecccccc-cCCCCCCccCCCC--CEEEEEEeEEECCEEEeEEeEEEcCCCCHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 8999999776 8999999999999 9999999999999999999999998 8999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCccccccCCccccccccccccCCCccc-CCC--CceecCCcEEEEeeccccccC-------CCC
Q 001468 352 VSAAYKAASTVVEKDAPELAANLTRNAGTGIGLEFRESGLSLN-AKN--DRILKAGMVFNVSLGFQNLQT-------ENK 421 (1073)
Q Consensus 352 ~~dV~~aa~~~l~~~Gp~l~~~~~h~~GHgIGle~~E~p~~l~-~~~--~~~L~~GMVf~IEpG~~~l~~-------~~~ 421 (1073)
++||++++.+++.+.| |.. +.+.+|||||+.+||.|.+.. .++ ..+|++||||+|||+++ +.. ++|
T Consensus 276 ~~dI~~~i~~~~~~~G--~~~-v~~~~GHGIG~~~He~P~i~~~~~~~~~~~l~~GMVfTIEP~i~-~g~~~~~~~~d~w 351 (396)
T PLN03158 276 YREVGEVINRHATMSG--LSV-VKSYCGHGIGELFHCAPNIPHYARNKAVGVMKAGQVFTIEPMIN-AGVWRDRMWPDGW 351 (396)
T ss_pred HHHHHHHHHHHHHHcC--CCc-cCCccCCccccccCCCCCCCcccCCCCCCEecCCcEEEECCeec-cCcccceecCCCc
Confidence 9999999999999999 653 567899999999999995322 233 37999999999999998 321 234
Q ss_pred C--CCCCeeeEEEEEEEEEeCCCceecccccccchhhhccc
Q 001468 422 N--PKTQKFSVLLADTVIVGEKVPDIVTSKSSKAVKDVAYS 460 (1073)
Q Consensus 422 ~--~~~~~~gvriEDTVlVte~G~evLT~~~pk~l~~I~~~ 460 (1073)
. ..+|.+++++||||+||++|+|+||...|+....+.++
T Consensus 352 t~~t~dG~~~aq~E~tvlVTe~G~EiLT~~~~~~~~~~~~~ 392 (396)
T PLN03158 352 TAVTADGKRSAQFEHTLLVTETGVEVLTARLPSSPDVFPWL 392 (396)
T ss_pred eEEecCCceeeEeeeEEEEeCCcceECCCCCCCCccccccc
Confidence 3 34677899999999999999999998677776654433
No 22
>cd01087 Prolidase Prolidase. E.C. 3.4.13.9. Also known as Xaa-Pro dipeptidase, X-Pro dipeptidase, proline dipeptidase., imidodipeptidase, peptidase D, gamma-peptidase. Catalyses hydrolysis of Xaa-Pro dipeptides; also acts on aminoacyl-hydroxyproline analogs. No action on Pro-Pro.
Probab=100.00 E-value=1.2e-38 Score=347.63 Aligned_cols=222 Identities=23% Similarity=0.302 Sum_probs=193.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCHHHHHHHHHHHHHccchhhhhcccCCCCCCCCCeEEeCCCCCCCCC
Q 001468 206 LTNIKKAAFLSSSVMKQFVVPKLEKVIDEEKKVSHSSLMDETEKAILEPARIKVKLKAENVDICYPPIFQSGGEFDLKPS 285 (1073)
Q Consensus 206 I~~iR~Aa~ia~~a~~~~~~~~i~~iid~e~GvtE~eLa~~ie~~l~~~gk~~~~~g~~~~~~~y~piV~SG~n~~l~~h 285 (1073)
|++||+|+++++.+|. ++.+.++ ||+||.+|++.+.+.+.. .|+. .+|+++|++|.|..+ +|
T Consensus 1 i~~lr~A~~i~~~~~~-~~~~~i~------pG~tE~ei~~~~~~~~~~-------~G~~---~~~~~~v~~g~~~~~-~H 62 (243)
T cd01087 1 IELMRKACDISAEAHR-AAMKASR------PGMSEYELEAEFEYEFRS-------RGAR---LAYSYIVAAGSNAAI-LH 62 (243)
T ss_pred CHHHHHHHHHHHHHHH-HHHHHCc------CCCcHHHHHHHHHHHHHH-------cCCC---cCCCCeEEECCCccc-cC
Confidence 5799999999999999 8888888 599999999999988875 3432 568899999999876 89
Q ss_pred CcCCCcccccCCcceEEEeeceeeCCeEeeeEEEEEe-c-CChHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 001468 286 ASSNDNYLYYDSTSVIICAVGSRYNSYCSNVARTFLI-D-ANTVQSKAYEVLLKAHEAAISALKSGNKVSAAYKAASTVV 363 (1073)
Q Consensus 286 ~~~~dr~L~~G~~dvI~vdlG~~y~GY~sditRT~~V-g-Ps~eq~~~y~~llea~~a~i~~lkPGvt~~dV~~aa~~~l 363 (1073)
+.|++++|+.| |+|++|+|++|+|||+|++|||++ + |+++|+++|++++++++++++++|||+++++|++++.+++
T Consensus 63 ~~~~~~~l~~G--d~v~vD~g~~~~GY~ad~~Rt~~vgg~~~~~~~~~~~~~~~a~~~~i~~~rpG~~~~~v~~a~~~~~ 140 (243)
T cd01087 63 YVHNDQPLKDG--DLVLIDAGAEYGGYASDITRTFPVNGKFTDEQRELYEAVLAAQKAAIAACKPGVSYEDIHLLAHRVL 140 (243)
T ss_pred CCcCCCcCCCC--CEEEEEeCceECCEeeeeeEEEEeCCcCCHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHH
Confidence 99999999999 999999999999999999999999 4 7999999999999999999999999999999999999999
Q ss_pred HhcCCc----------------cccccCCccccccccccccCCCc-ccCCCCceecCCcEEEEeeccccccCCCC--CCC
Q 001468 364 EKDAPE----------------LAANLTRNAGTGIGLEFRESGLS-LNAKNDRILKAGMVFNVSLGFQNLQTENK--NPK 424 (1073)
Q Consensus 364 ~~~Gp~----------------l~~~~~h~~GHgIGle~~E~p~~-l~~~~~~~L~~GMVf~IEpG~~~l~~~~~--~~~ 424 (1073)
++.+.. +..+++|++|||||+++||.|.. ..+++..+|++||||+||||+| +++... ...
T Consensus 141 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~h~~GhgiGl~~~e~p~~~~~~~~~~~l~~GMv~~iEp~iy-~~~~~~~~~~~ 219 (243)
T cd01087 141 AEGLKELGILKGDVDEIVESGAYAKFFPHGLGHYLGLDVHDVGGYLRYLRRARPLEPGMVITIEPGIY-FIPDLLDVPEY 219 (243)
T ss_pred HHHHHhcCcccCchHhhhhhhhhhhhcCCCCccccCcccccCccccccCCCCCCCCCCCEEEECCEEE-eCCcccccccc
Confidence 876421 23678999999999999999953 2678889999999999999999 432100 012
Q ss_pred CCeeeEEEEEEEEEeCCCceeccc
Q 001468 425 TQKFSVLLADTVIVGEKVPDIVTS 448 (1073)
Q Consensus 425 ~~~~gvriEDTVlVte~G~evLT~ 448 (1073)
.+.+|+++||||+||++|+++||.
T Consensus 220 ~~~~g~~ied~v~Vt~~G~e~Lt~ 243 (243)
T cd01087 220 FRGGGIRIEDDVLVTEDGPENLTR 243 (243)
T ss_pred cceeEEEeeeEEEEcCCcceeCcC
Confidence 347999999999999999999984
No 23
>KOG2737 consensus Putative metallopeptidase [General function prediction only]
Probab=100.00 E-value=2.1e-38 Score=344.37 Aligned_cols=397 Identities=17% Similarity=0.205 Sum_probs=284.9
Q ss_pred cCCHHHHHHHHHHHHHHHhccCCCCCCCccE--EEEeCCCCCCcccc-------cccccceEeecCCcCCcEEEEE--eC
Q 001468 26 AINLDNFSKRLKMLYSHWTEHNSDLWGDSNA--LAVATPPVSEDLRY-------LKSSALNVWLVGYEFPETIMVF--LK 94 (1073)
Q Consensus 26 ~i~~~~f~~Rl~rL~~~m~~~~~~~~~glDa--Lli~~g~~~~~~~Y-------~ks~al~~wLtGye~p~tlll~--t~ 94 (1073)
.+|.+.|...+.|+..+++..-......+|+ ++++.|. .+.++| .+|.+.++||+|...|+++.+| ..
T Consensus 11 ~vP~~lf~~nr~rl~~~lr~k~~~~nr~~~~~s~vllqgG-eE~nrYctD~~~lFrQesYF~~lfGV~ep~~yg~idv~t 89 (492)
T KOG2737|consen 11 LVPMELFAGNRKRLLEALRKKLLSSNRSLDGGSFVLLQGG-EEKNRYCTDTTELFRQESYFAYLFGVREPGFYGAIDVGT 89 (492)
T ss_pred eecHHHhhcchHHHHHHHHhhcccccccccCceEEEEecc-hhhcccccchHHHHhhhhHHHHhhcCCCccceEEEEecC
Confidence 4889999988888888887732222233454 5555554 234555 2789999999999999976665 34
Q ss_pred CcEEEEEeCCccchHHHHHhhc------ccccceEEEEEeCCCCCCCCChHHHHHHHhhhcccCCCCCCCEEEEeCC-CC
Q 001468 95 KQIHFLCSQKKASLLEVIKKSA------KEAVGIEVVIHVKGKTDDGSGLMDKIFGAVNDQSKSGGQNSPVVGHISR-EA 167 (1073)
Q Consensus 95 ~~~~ll~s~kK~~~le~~~~~~------~~~~~vei~~~~kd~~d~~~~~~~~l~~~Lk~~~~~~~~~~~rIGv~~k-d~ 167 (1073)
++.+||++.-..+| ..|.+.. .....|+-+.| .+++...++. ...+-+-...- ..
T Consensus 90 gKstLFvPrlp~~y-a~W~G~i~~l~~fke~y~VDev~y-----------vde~~~~~~~------~~~k~l~~l~g~nT 151 (492)
T KOG2737|consen 90 GKSTLFVPRLPDSY-ATWMGEILSLQHFKEKYAVDEVFY-----------VDEIIQVLKG------SKPKLLYLLRGLNT 151 (492)
T ss_pred CceEEEecCCChhh-ceeccccCCHHHHHHHhhhhheee-----------hHhHHHHhhc------cCccceeeeecccc
Confidence 68899886532222 1121110 00122332333 3455566653 23333333311 11
Q ss_pred CcHHHHHHHHHHHhhcCceEEe---CCcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCHHHHH
Q 001468 168 PEGKLLETWNEKLKKANFALSD---VSNGFSDLFAIKDDTELTNIKKAAFLSSSVMKQFVVPKLEKVIDEEKKVSHSSLM 244 (1073)
Q Consensus 168 ~~g~~~~~l~~~l~~~~~e~vD---vs~~l~~lR~VKd~~EI~~iR~Aa~ia~~a~~~~~~~~i~~iid~e~GvtE~eLa 244 (1073)
-++.+.+.- .+.+.+.-.+| .-+.++++|.|||+.||+.||.|++|++.++. +++.+++ ||+.|.++.
T Consensus 152 Dsg~v~~e~--~f~g~~kf~~D~~~lyp~m~E~RviKs~~EieviRya~kISseaH~-~vM~~~~------pg~~Eyq~e 222 (492)
T KOG2737|consen 152 DSGNVLKEA--SFAGISKFETDLTLLYPILAECRVIKSSLEIEVIRYANKISSEAHI-EVMRAVR------PGMKEYQLE 222 (492)
T ss_pred CcccccCcc--cccchhhcccCchhhhHHHhhheeeCCHHHHHHHHHHHhhccHHHH-HHHHhCC------chHhHHhHH
Confidence 122211100 00000000123 34578899999999999999999999999999 9999999 599999998
Q ss_pred HHHHHHHHccchhhhhcccCCCCCCCCCeEEeCCCCCCCCCC----cCCCcccccCCcceEEEeeceeeCCeEeeeEEEE
Q 001468 245 DETEKAILEPARIKVKLKAENVDICYPPIFQSGGEFDLKPSA----SSNDNYLYYDSTSVIICAVGSRYNSYCSNVARTF 320 (1073)
Q Consensus 245 ~~ie~~l~~~gk~~~~~g~~~~~~~y~piV~SG~n~~l~~h~----~~~dr~L~~G~~dvI~vdlG~~y~GY~sditRT~ 320 (1073)
..++......| | ....+|++|++||.|++. .|+ .|+++.++.| |.+++|+|+.|.+|.||||++|
T Consensus 223 slF~hh~y~~G------G--cRh~sYtcIc~sG~ns~v-LHYgha~apNd~~iqdg--d~cLfDmGaey~~yaSDITcsF 291 (492)
T KOG2737|consen 223 SLFLHHSYSYG------G--CRHLSYTCICASGDNSAV-LHYGHAGAPNDRTIQDG--DLCLFDMGAEYHFYASDITCSF 291 (492)
T ss_pred HHHHHhhhccC------C--ccccccceeeecCCCcce-eeccccCCCCCcccCCC--CEEEEecCcceeeeecccceec
Confidence 88877765432 2 246789999999999986 777 8999999999 9999999999999999999999
Q ss_pred EecC--ChHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc----CC---c--------cc-cccCCcccccc
Q 001468 321 LIDA--NTVQSKAYEVLLKAHEAAISALKSGNKVSAAYKAASTVVEKD----AP---E--------LA-ANLTRNAGTGI 382 (1073)
Q Consensus 321 ~VgP--s~eq~~~y~~llea~~a~i~~lkPGvt~~dV~~aa~~~l~~~----Gp---~--------l~-~~~~h~~GHgI 382 (1073)
..+. +++|+.+|++++.++.++++++|||+.+.|++..+..++-+. |. + +. .++||++||-|
T Consensus 292 P~nGKFTadqk~VYnaVLda~navm~a~KpGv~W~Dmh~La~kvlle~laq~gIl~gdvd~m~~ar~~~vF~PHGLGH~l 371 (492)
T KOG2737|consen 292 PVNGKFTADQKLVYNAVLDASNAVMEAMKPGVWWVDMHKLAEKVLLEHLAQMGILKGDVDEMVEARLGAVFMPHGLGHFL 371 (492)
T ss_pred cCCCccchhHHHHHHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHhcCceeccHHHHHHhccCeeeccccccccc
Confidence 9973 999999999999999999999999999999999988765433 31 0 11 24699999999
Q ss_pred ccccccCCCccc------------CCCCceecCCcEEEEeecccccc--------CCCC----C-----CCCCeeeEEEE
Q 001468 383 GLEFRESGLSLN------------AKNDRILKAGMVFNVSLGFQNLQ--------TENK----N-----PKTQKFSVLLA 433 (1073)
Q Consensus 383 Gle~~E~p~~l~------------~~~~~~L~~GMVf~IEpG~~~l~--------~~~~----~-----~~~~~~gvriE 433 (1073)
||++|+...+.. -...+.|++|||+++|||+|.+. +|.. + .-.+.||||||
T Consensus 372 GlDvHDvGGyp~~~~rp~~P~l~~LR~aR~L~e~MviTvEPGcYFi~~Ll~ealadp~~~~f~n~e~~~rfr~~GGVRIE 451 (492)
T KOG2737|consen 372 GLDVHDVGGYPEGVERPDEPGLRSLRTARHLKEGMVITVEPGCYFIDFLLDEALADPARAEFLNREVLQRFRGFGGVRIE 451 (492)
T ss_pred cccccccCCCCCCCCCCCcchhhhhhhhhhhhcCcEEEecCChhHHHHHHHHHhcChHhhhhhhHHHHHHhhccCceEee
Confidence 999998653331 13467899999999999999642 1210 0 23578999999
Q ss_pred EEEEEeCCCceecccccccchhhhccccC
Q 001468 434 DTVIVGEKVPDIVTSKSSKAVKDVAYSFN 462 (1073)
Q Consensus 434 DTVlVte~G~evLT~~~pk~l~~I~~~~~ 462 (1073)
|.|+||.+|+|.||. .|+...+|+-.+.
T Consensus 452 dDv~vt~~G~enlt~-vprtveeIEa~ma 479 (492)
T KOG2737|consen 452 DDVVVTKSGIENLTC-VPRTVEEIEACMA 479 (492)
T ss_pred ccEEEeccccccccC-CCCCHHHHHHHHh
Confidence 999999999999997 9999999876554
No 24
>cd01092 APP-like Similar to Prolidase and Aminopeptidase P. The members of this subfamily presumably catalyse hydrolysis of Xaa-Pro dipeptides and/or release of any N-terminal amino acid, including proline, that is linked with proline.
Probab=100.00 E-value=1e-36 Score=323.54 Aligned_cols=207 Identities=27% Similarity=0.442 Sum_probs=191.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCHHHHHHHHHHHHHccchhhhhcccCCCCCCCCCeEEeCCCCCCCCC
Q 001468 206 LTNIKKAAFLSSSVMKQFVVPKLEKVIDEEKKVSHSSLMDETEKAILEPARIKVKLKAENVDICYPPIFQSGGEFDLKPS 285 (1073)
Q Consensus 206 I~~iR~Aa~ia~~a~~~~~~~~i~~iid~e~GvtE~eLa~~ie~~l~~~gk~~~~~g~~~~~~~y~piV~SG~n~~l~~h 285 (1073)
|++||+||++++.++. ++...++ +|+||.+|++.++..+.+ .|.. .++|+++|+||.+... +|
T Consensus 1 i~~~r~a~~i~~~~~~-~~~~~~~------~G~te~ei~~~~~~~~~~-------~g~~--~~~~~~~v~~g~~~~~-~h 63 (208)
T cd01092 1 IELLRKAARIADKAFE-ELLEFIK------PGMTEREVAAELEYFMRK-------LGAE--GPSFDTIVASGPNSAL-PH 63 (208)
T ss_pred CHHHHHHHHHHHHHHH-HHHHHCc------CCCCHHHHHHHHHHHHHH-------cCCC--CCCCCcEEEECccccc-cC
Confidence 5799999999999999 8888888 599999999999988864 2332 5689999999999765 89
Q ss_pred CcCCCcccccCCcceEEEeeceeeCCeEeeeEEEEEec-CChHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 001468 286 ASSNDNYLYYDSTSVIICAVGSRYNSYCSNVARTFLID-ANTVQSKAYEVLLKAHEAAISALKSGNKVSAAYKAASTVVE 364 (1073)
Q Consensus 286 ~~~~dr~L~~G~~dvI~vdlG~~y~GY~sditRT~~Vg-Ps~eq~~~y~~llea~~a~i~~lkPGvt~~dV~~aa~~~l~ 364 (1073)
..|+++.|+.| |+|++|+|++|+|||+|++||+++| |+++|+++|++++++++++++++|||++++|||+++.++++
T Consensus 64 ~~~~~~~l~~g--d~v~id~g~~~~gy~~d~~RT~~~g~~~~~~~~~~~~~~~~~~~~~~~~~pG~~~~di~~~~~~~~~ 141 (208)
T cd01092 64 GVPSDRKIEEG--DLVLIDFGAIYDGYCSDITRTVAVGEPSDELKEIYEIVLEAQQAAIKAVKPGVTAKEVDKAARDVIE 141 (208)
T ss_pred CCCCCcCcCCC--CEEEEEeeeeECCEeccceeEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHH
Confidence 99999999999 9999999999999999999999998 89999999999999999999999999999999999999999
Q ss_pred hcCCccccccCCccccccccccccCCCcccCCCCceecCCcEEEEeeccccccCCCCCCCCCeeeEEEEEEEEEeCCCc
Q 001468 365 KDAPELAANLTRNAGTGIGLEFRESGLSLNAKNDRILKAGMVFNVSLGFQNLQTENKNPKTQKFSVLLADTVIVGEKVP 443 (1073)
Q Consensus 365 ~~Gp~l~~~~~h~~GHgIGle~~E~p~~l~~~~~~~L~~GMVf~IEpG~~~l~~~~~~~~~~~~gvriEDTVlVte~G~ 443 (1073)
+.| +..+|+|++|||||+.+||.|+ +.++++++|++||||+|||+++ + ++.+|+++||||+||++|+
T Consensus 142 ~~g--~~~~~~~~~Gh~iG~~~~e~p~-i~~~~~~~l~~gmv~~iep~~~-~--------~~~~g~~~ed~v~vt~~g~ 208 (208)
T cd01092 142 EAG--YGEYFIHRTGHGVGLEVHEAPY-ISPGSDDVLEEGMVFTIEPGIY-I--------PGKGGVRIEDDVLVTEDGC 208 (208)
T ss_pred HcC--ccccCCCCCccccCcccCcCCC-cCCCCCCCcCCCCEEEECCeEE-e--------cCCCEEEeeeEEEECCCCC
Confidence 999 7788999999999999999995 8888999999999999999998 4 4669999999999999985
No 25
>cd01086 MetAP1 Methionine Aminopeptidase 1. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and Peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.
Probab=100.00 E-value=4.1e-36 Score=326.56 Aligned_cols=222 Identities=23% Similarity=0.296 Sum_probs=192.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCHHHHHHHHHHHHHccchhhhhcccCC---CCCCCCCeEEeCCCCCC
Q 001468 206 LTNIKKAAFLSSSVMKQFVVPKLEKVIDEEKKVSHSSLMDETEKAILEPARIKVKLKAEN---VDICYPPIFQSGGEFDL 282 (1073)
Q Consensus 206 I~~iR~Aa~ia~~a~~~~~~~~i~~iid~e~GvtE~eLa~~ie~~l~~~gk~~~~~g~~~---~~~~y~piV~SG~n~~l 282 (1073)
|++||+|+++++.++. ++.+.++ +|+||.+|++.+.+.+...| ... ....|++.+++|.+..+
T Consensus 1 I~~lr~A~~i~~~~~~-~~~~~~~------pG~tE~ev~~~~~~~~~~~G-------~~~~~~~~~~~~~~~~~~~~~~~ 66 (238)
T cd01086 1 IEGMREAGRIVAEVLD-ELAKAIK------PGVTTKELDQIAHEFIEEHG-------AYPAPLGYYGFPKSICTSVNEVV 66 (238)
T ss_pred CHHHHHHHHHHHHHHH-HHHHHcc------CCCCHHHHHHHHHHHHHHcC-------CCcccccCCCCCcceecCCCCce
Confidence 5789999999999999 8999998 59999999999998887543 211 12346677888988775
Q ss_pred CCCCcCCCcccccCCcceEEEeeceeeCCeEeeeEEEEEec-CChHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 001468 283 KPSASSNDNYLYYDSTSVIICAVGSRYNSYCSNVARTFLID-ANTVQSKAYEVLLKAHEAAISALKSGNKVSAAYKAAST 361 (1073)
Q Consensus 283 ~~h~~~~dr~L~~G~~dvI~vdlG~~y~GY~sditRT~~Vg-Ps~eq~~~y~~llea~~a~i~~lkPGvt~~dV~~aa~~ 361 (1073)
+|+.|+++.|++| |+|++|+|++|+|||+|++|||++| |+++|+++|+.++++++++++++|||+++++|++++++
T Consensus 67 -~h~~~~~~~l~~G--d~v~id~g~~~~GY~ad~~RT~~~G~~~~~~~~~~~~~~~~~~~~~~~~~pG~~~~~v~~~~~~ 143 (238)
T cd01086 67 -CHGIPDDRVLKDG--DIVNIDVGVELDGYHGDSARTFIVGEVSEEAKKLVEVTEEALYKGIEAVKPGNRIGDIGHAIEK 143 (238)
T ss_pred -eCCCCCCcccCCC--CEEEEEEEEEECCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 8999999999999 9999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred HHHhcCCccccccCCccccccccccccCCCcc---cCCCCceecCCcEEEEeeccccccC-------CCCC--CCCCeee
Q 001468 362 VVEKDAPELAANLTRNAGTGIGLEFRESGLSL---NAKNDRILKAGMVFNVSLGFQNLQT-------ENKN--PKTQKFS 429 (1073)
Q Consensus 362 ~l~~~Gp~l~~~~~h~~GHgIGle~~E~p~~l---~~~~~~~L~~GMVf~IEpG~~~l~~-------~~~~--~~~~~~g 429 (1073)
++++.| +.. +.+.+|||||+.+||.|..+ .++++.+|++||||++||++| +.. ..|. .+++.+|
T Consensus 144 ~~~~~G--~~~-~~~~~GHgiG~~~~e~p~~~~~~~~~~~~~le~Gmv~~iep~i~-~~~~~~~~~~~~~~~~~~~g~~g 219 (238)
T cd01086 144 YAEKNG--YSV-VREFGGHGIGRKFHEEPQIPNYGRPGTGPKLKPGMVFTIEPMIN-LGTYEVVTLPDGWTVVTKDGSLS 219 (238)
T ss_pred HHHHcC--cce-ecCccccCCCCccccCCCcCCccCCCCCCEecCCCEEEEeeEEE-CCCCceEECCCCCEEEcCCCCEE
Confidence 999999 544 56889999999999999533 267889999999999999998 321 1122 2467899
Q ss_pred EEEEEEEEEeCCCceeccc
Q 001468 430 VLLADTVIVGEKVPDIVTS 448 (1073)
Q Consensus 430 vriEDTVlVte~G~evLT~ 448 (1073)
+++||||+||++|+++||.
T Consensus 220 ~~~edtv~Vte~G~e~Lt~ 238 (238)
T cd01086 220 AQFEHTVLITEDGPEILTL 238 (238)
T ss_pred EeeeeEEEEcCCcceeCCC
Confidence 9999999999999999983
No 26
>PF00557 Peptidase_M24: Metallopeptidase family M24 This Prosite entry corresponds to sub-family M24B This Prosite entry corresponds to sub-families M24A and M24C; InterPro: IPR000994 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This entry contains proteins that belong to MEROPS peptidase family M24 (clan MG), which share a common structural-fold, the "pita-bread" fold. The fold contains both alpha helices and an anti-parallel beta sheet within two structurally similar domains that are thought to be derived from an ancient gene duplication. The active site, where conserved, is located between the two domains. The fold is common to methionine aminopeptidase (3.4.11.18 from EC), aminopeptidase P (3.4.11.9 from EC), prolidase (3.4.13.9 from EC), agropine synthase and creatinase (3.5.3.3 from EC). Though many of these peptidases require a divalent cation, creatinase is not a metal-dependent enzyme [, , ]. The entry also contains proteins that have lost catalytic activity, for example Spt16, which is a component of the FACT complex. The crystal structure of the N-terminal domain of Spt16, determined to 2.1A, reveals an aminopeptidase P fold whose enzymatic activity has been lost. This fold binds directly to histones H3-H4 through a interaction with their globular core domains, as well as with their N-terminal tails []. The FACT complex is a stable heterodimer in Saccharomyces cerevisiae (Baker's yeast) comprising Spt16p (P32558 from SWISSPROT, IPR013953 from INTERPRO) and Pob3p (Q04636 from SWISSPROT, IPR000969 from INTERPRO). The complex plays a role in transcription initiation and promotes binding of TATA-binding protein (TBP) to a TATA box in chromatin []; it also facilitates RNA Polymerase II transcription elongation through nucleosomes by destabilising and then reassembling nucleosome structure [, , ]. ; GO: 0009987 cellular process; PDB: 4A6V_B 4A6W_A 3CTZ_A 3IG4_B 2B3H_A 2NQ6_A 2NQ7_A 2GZ5_A 2G6P_A 2B3L_A ....
Probab=100.00 E-value=4.6e-35 Score=311.29 Aligned_cols=204 Identities=32% Similarity=0.498 Sum_probs=183.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCHHHHHHHHHHH-HHccchhhhhcccCCCCCCCCCeEEeCCCCCCCCC
Q 001468 207 TNIKKAAFLSSSVMKQFVVPKLEKVIDEEKKVSHSSLMDETEKA-ILEPARIKVKLKAENVDICYPPIFQSGGEFDLKPS 285 (1073)
Q Consensus 207 ~~iR~Aa~ia~~a~~~~~~~~i~~iid~e~GvtE~eLa~~ie~~-l~~~gk~~~~~g~~~~~~~y~piV~SG~n~~l~~h 285 (1073)
++||+|+++++.++. ++.+.++ +|+||.+|++.+... +.. .|. .+++|+++++||.++.+ +|
T Consensus 1 e~~R~a~~i~~~~~~-~~~~~~~------~G~te~ei~~~~~~~~~~~-------~g~--~~~~~~~~~~~g~~~~~-~~ 63 (207)
T PF00557_consen 1 ECMRKAARIADAAME-AAMEALR------PGMTEYEIAAAIERAMLRR-------HGG--EEPAFPPIVGSGPNTDL-PH 63 (207)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHS------TTCBHHHHHHHHHHHHHHH-------TTT--TEESSESEEEECCCCGE-TT
T ss_pred CHHHHHHHHHHHHHH-HHHHHcc------CCCcHHHHHHHHHHHHHHH-------cCC--CcccCCceEecCCccee-cc
Confidence 579999999999999 8999988 599999999999988 433 232 36889999999999986 88
Q ss_pred CcCCCcccccCCcceEEEeeceeeCCeEeeeEEEEEecCChHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 001468 286 ASSNDNYLYYDSTSVIICAVGSRYNSYCSNVARTFLIDANTVQSKAYEVLLKAHEAAISALKSGNKVSAAYKAASTVVEK 365 (1073)
Q Consensus 286 ~~~~dr~L~~G~~dvI~vdlG~~y~GY~sditRT~~VgPs~eq~~~y~~llea~~a~i~~lkPGvt~~dV~~aa~~~l~~ 365 (1073)
..|++++|+.| |+|++|+|++|+|||+|++||+++||+++|+++|+.++++++++++.+|||++++|||+++.+++.+
T Consensus 64 ~~~~~~~l~~g--d~v~id~~~~~~gy~~d~~Rt~~~G~~~~~~~~~~~~~~~~~~~~~~~~pG~~~~~v~~~~~~~~~~ 141 (207)
T PF00557_consen 64 YTPTDRRLQEG--DIVIIDFGPRYDGYHADIARTFVVGPTPEQRRAYEAAREALEAAIEALRPGVTGSDVYEAVREVLEE 141 (207)
T ss_dssp TBCCSSBESTT--EEEEEEEEEEETTEEEEEEEEEESSSHHHHHHHHHHHHHHHHHHHHH-STTSBHHHHHHHHHHHHHH
T ss_pred eeccceeeecC--CcceeeccceeeeeEeeeeeEEEEeecccccchhhhhHHHHHhHhhhcccccccchhhHHHHHHHHh
Confidence 89999999999 9999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred cCCccccccCCccccccccccccC-CCccc-CCCCceecCCcEEEEeeccccccCCCCCCCCCeeeEEEEEEEEEeC
Q 001468 366 DAPELAANLTRNAGTGIGLEFRES-GLSLN-AKNDRILKAGMVFNVSLGFQNLQTENKNPKTQKFSVLLADTVIVGE 440 (1073)
Q Consensus 366 ~Gp~l~~~~~h~~GHgIGle~~E~-p~~l~-~~~~~~L~~GMVf~IEpG~~~l~~~~~~~~~~~~gvriEDTVlVte 440 (1073)
.| +...++|.+|||||+++||. |. |. ++++.+|++||||+|+|++++. ++.+|+++||||+||+
T Consensus 142 ~g--~~~~~~~~~GH~iG~~~~~~~P~-i~~~~~~~~l~~gmv~~iep~~~~~--------~~~~g~~~ed~v~Vte 207 (207)
T PF00557_consen 142 YG--LEEPYPHGLGHGIGLEFHEPGPN-IARPGDDTVLEPGMVFAIEPGLYFI--------PGWGGVRFEDTVLVTE 207 (207)
T ss_dssp TT--EGEEBTSSSEEEESSSSSEEEEE-ESSTTTSSB--TTBEEEEEEEEEEE--------TTSEEEEEBEEEEEES
T ss_pred hc--ccceeeeccccccccccccccee-eecccccceecCCCceeEeeeEEcc--------CCCcEEEEEEEEEECc
Confidence 99 76778999999999999997 85 65 7899999999999999999854 4668999999999996
No 27
>KOG0526 consensus Nucleosome-binding factor SPN, POB3 subunit [Transcription; Replication, recombination and repair; Chromatin structure and dynamics]
Probab=100.00 E-value=4.4e-35 Score=329.74 Aligned_cols=210 Identities=19% Similarity=0.236 Sum_probs=186.9
Q ss_pred ceEEEEecceeeecCCCCceeeeeccccceeeeccCCCccEEEEEEEcccceeeCceeccee--eEE-EEeeeeEeecCC
Q 001468 701 GSLEAHTNGFRYSTSRPDERVDVMYGNIKHAFFQPAEREMITLLHFHLHNHIMVGNKKTKDV--QFY-IEVMDVVQTLGG 777 (1073)
Q Consensus 701 G~le~h~ng~r~~~~~~~~~~dily~nIk~~ffqp~~~e~~v~~h~~L~~pi~~Gkkk~~dv--QF~-~e~~~~~~~~~~ 777 (1073)
=.|.+|.+.||+.+ +++++.|.|+.|+++|++|..++.|+.+++.|+|||+||||+|+++ ||- .|.+++.+.++
T Consensus 216 YdI~iy~t~lrL~G--kTyDyKI~y~SI~rLflLPk~d~rh~~fVisldPPIRQGQTrY~~LV~qF~kDee~e~eLsls- 292 (615)
T KOG0526|consen 216 YDIKIYPTFLRLHG--KTYDYKIPYKSINRLFLLPKKDQRHVYFVISLDPPIRQGQTRYPFLVLQFGKDEEVELELSLS- 292 (615)
T ss_pred ceeEEehhhhhhcc--cccceecchhheeeeEeccCCCCceEEEEEecCCccccCccccceEEEEeccccceeEeeccc-
Confidence 37999999999998 8999999999999999999999999999999999999999999966 998 45556555333
Q ss_pred CcCCCCChhHHHHHHHHHHHHHHHH-HHHHHHHHHHhhccCCCcccCCCceeeccCcccceeecccCceeeeeeCcccce
Q 001468 778 GKRSAYDPDEVEEEQRERARKNKIN-MDFQNFVNRVNDLWGQPQFKAFDLEFDQPLRELGFHGVPHKASAFIVPTSSCLV 856 (1073)
Q Consensus 778 ~r~~~~d~de~~~eq~e~~~~~~ln-~~f~~f~~~v~~~~~~~~~~~~~~~f~~p~~~l~f~g~~~~~~~~l~pt~~clv 856 (1073)
||..++..+-++++.+. ..|..|.+.++.|++...+ .|.+|.....-.+..|...++.++|||+.+|++
T Consensus 293 --------dE~l~~k~~~kL~k~ysg~i~Ev~s~V~k~L~~rKit--~Pg~F~s~~g~~av~CS~KAneG~LYPLekgFl 362 (615)
T KOG0526|consen 293 --------DEELEEKYKGKLKKEYSGPIYEVFSIVMKALCGRKIT--VPGEFLSHSGTAAVKCSFKANEGLLYPLEKGFL 362 (615)
T ss_pred --------HHHHhhhhcchhhhhcCccHHHHHHHHHHHHhCceee--ccccccccCCCceeeeeecccCceEeecccceE
Confidence 33334455666666666 7888999999998877765 789999999999999999999999999999999
Q ss_pred eeccCCcEEEEcCceeEEEEEeec---CCCcceeEEEEEecCCCCeEEEecccCCChhhHHHHhhcCCceeee
Q 001468 857 ELIETPFVVITLSEIEIVNLERVG---LGQKNFDMTIVFKDFKRDVLRIDSIPSSSLDGIKEWLDTTDLKYYE 926 (1073)
Q Consensus 857 ~l~e~P~~vi~l~eie~v~feRv~---~~~k~FD~~~v~kd~~~~~~~i~~I~~~~l~~ik~wl~~~~i~~~e 926 (1073)
+|+ +|+++|.++||..|+|+|++ ...|+|||.|.+| +..+++|++|.++++..|-+||++++|++.+
T Consensus 363 Fl~-KP~l~I~f~EIS~V~fsR~~~s~t~trtFD~ei~lk--~g~~~tFs~i~keE~~~L~~fl~sK~lki~N 432 (615)
T KOG0526|consen 363 FLP-KPPLYIRFEEISSVNFSRSGLSGTSTRTFDFEITLK--SGTSYTFSNISKEEYGKLFDFLNSKGLKIRN 432 (615)
T ss_pred eec-CCceEeeccceeeEEEEeccCCccceeeEEEEEEEc--CCCeeeecccCHHHHHHHHHHHhhcCceeec
Confidence 999 99999999999999999994 4899999999999 7899999999999999999999999999764
No 28
>cd01085 APP X-Prolyl Aminopeptidase 2. E.C. 3.4.11.9. Also known as X-Pro aminopeptidase, proline aminopeptidase, aminopeptidase P, and aminoacylproline aminopeptidase. Catalyses release of any N-terminal amino acid, including proline, that is linked with proline, even from a dipeptide or tripeptide.
Probab=100.00 E-value=1.3e-34 Score=312.34 Aligned_cols=208 Identities=22% Similarity=0.299 Sum_probs=181.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccccCC--CCHHHHHHHHHHHHHccchhhhhcccCCCCCCCCCeEEeCCCCCCCC
Q 001468 207 TNIKKAAFLSSSVMKQFVVPKLEKVIDEEKK--VSHSSLMDETEKAILEPARIKVKLKAENVDICYPPIFQSGGEFDLKP 284 (1073)
Q Consensus 207 ~~iR~Aa~ia~~a~~~~~~~~i~~iid~e~G--vtE~eLa~~ie~~l~~~gk~~~~~g~~~~~~~y~piV~SG~n~~l~~ 284 (1073)
+.||.+..++ .++. .+.+.++ +| +||.||++.+++.+... + +....+|+++|++|.|.++ +
T Consensus 5 ~~~~~~~~~~-~~~~-~~~~~i~------~G~~~tE~eiaa~~~~~~~~~-------g-~~~~~~f~~~v~~g~n~~~-~ 67 (224)
T cd01085 5 AHIRDGVALV-EFLA-WLEQEVP------KGETITELSAADKLEEFRRQQ-------K-GYVGLSFDTISGFGPNGAI-V 67 (224)
T ss_pred HHHHHHHHHH-HHHH-HHHHHhc------cCCCEeHHHHHHHHHHHHHHc-------C-CCcCCCcceEEEecCccCc-C
Confidence 3566666664 7777 6777777 59 99999999999877532 1 1124578999999999887 9
Q ss_pred CCcCC---CcccccCCcceEEEeeceeeCCeEeeeEEEEEec-CChHHHHHHHHHHHHHHHHHHHcC-CCCCHHHHHHHH
Q 001468 285 SASSN---DNYLYYDSTSVIICAVGSRYNSYCSNVARTFLID-ANTVQSKAYEVLLKAHEAAISALK-SGNKVSAAYKAA 359 (1073)
Q Consensus 285 h~~~~---dr~L~~G~~dvI~vdlG~~y~GY~sditRT~~Vg-Ps~eq~~~y~~llea~~a~i~~lk-PGvt~~dV~~aa 359 (1073)
|+.|+ ++.|+.| |+|++|+|+.|+|||+|++|||++| |+++|+++|+.+++++.++++.++ ||+++.+|++++
T Consensus 68 H~~p~~~~~r~l~~G--D~V~iD~g~~~~gY~aD~~RT~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~v~~~~ 145 (224)
T cd01085 68 HYSPTEESNRKISPD--GLYLIDSGGQYLDGTTDITRTVHLGEPTAEQKRDYTLVLKGHIALARAKFPKGTTGSQLDALA 145 (224)
T ss_pred CCCcCcccCcccCCC--CEEEEEeCccCCCcccccEEeecCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 99998 8999999 9999999999999999999999998 899999999999999999999884 999999999999
Q ss_pred HHHHHhcCCccccccCCccccccc--cccccCCCcc-cCCCCceecCCcEEEEeeccccccCCCCCCCCCeeeEEEEEEE
Q 001468 360 STVVEKDAPELAANLTRNAGTGIG--LEFRESGLSL-NAKNDRILKAGMVFNVSLGFQNLQTENKNPKTQKFSVLLADTV 436 (1073)
Q Consensus 360 ~~~l~~~Gp~l~~~~~h~~GHgIG--le~~E~p~~l-~~~~~~~L~~GMVf~IEpG~~~l~~~~~~~~~~~~gvriEDTV 436 (1073)
++++.+.| + .|.|++||||| +.+||.|.++ .+++..+|++||||+|||++| + ++.+|+++||||
T Consensus 146 ~~~~~~~g--~--~~~h~~GHgIG~~l~~hE~P~i~~~~~~~~~L~~GmvftiEP~iy-~--------~g~~gvried~v 212 (224)
T cd01085 146 RQPLWKAG--L--DYGHGTGHGVGSFLNVHEGPQSISPAPNNVPLKAGMILSNEPGYY-K--------EGKYGIRIENLV 212 (224)
T ss_pred HHHHHHhC--C--CCCCCCCCCCCCCCcCCCCCCcCCcCCCCCCcCCCCEEEECCEeE-e--------CCCeEEEeeEEE
Confidence 99999999 4 37899999999 6889999654 677889999999999999999 4 567999999999
Q ss_pred EEeCCCceec
Q 001468 437 IVGEKVPDIV 446 (1073)
Q Consensus 437 lVte~G~evL 446 (1073)
+||++|+.-+
T Consensus 213 ~Vt~~G~~~~ 222 (224)
T cd01085 213 LVVEAETTEF 222 (224)
T ss_pred EEeeCCcCCC
Confidence 9999998543
No 29
>cd01066 APP_MetAP A family including aminopeptidase P, aminopeptidase M, and prolidase. Also known as metallopeptidase family M24. This family of enzymes is able to cleave amido-, imido- and amidino-containing bonds. Members exibit relatively narrow substrate specificity compared to other metallo-aminopeptidases, suggesting they play roles in regulation of biological processes rather than general protein degradation.
Probab=100.00 E-value=9.4e-33 Score=290.45 Aligned_cols=206 Identities=30% Similarity=0.470 Sum_probs=188.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCHHHHHHHHHHHHHccchhhhhcccCCCCCCCCCeEEeCCCCCCCCC
Q 001468 206 LTNIKKAAFLSSSVMKQFVVPKLEKVIDEEKKVSHSSLMDETEKAILEPARIKVKLKAENVDICYPPIFQSGGEFDLKPS 285 (1073)
Q Consensus 206 I~~iR~Aa~ia~~a~~~~~~~~i~~iid~e~GvtE~eLa~~ie~~l~~~gk~~~~~g~~~~~~~y~piV~SG~n~~l~~h 285 (1073)
|+.||+|+++++.++. .+...++ ||+||.+|++.+...+... |. .+.+++++++|.+... +|
T Consensus 1 i~~~r~a~~i~~~~~~-~~~~~~~------~G~te~ei~~~~~~~~~~~-------g~---~~~~~~~v~~g~~~~~-~h 62 (207)
T cd01066 1 IARLRKAAEIAEAAMA-AAAEAIR------PGVTEAEVAAAIEQALRAA-------GG---YPAGPTIVGSGARTAL-PH 62 (207)
T ss_pred CHHHHHHHHHHHHHHH-HHHHHCc------CCCCHHHHHHHHHHHHHHc-------CC---CCCCCcEEEECccccC-cC
Confidence 4789999999999999 8898888 5999999999999988753 33 4667899999998654 89
Q ss_pred CcCCCcccccCCcceEEEeeceeeCCeEeeeEEEEEec-CChHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 001468 286 ASSNDNYLYYDSTSVIICAVGSRYNSYCSNVARTFLID-ANTVQSKAYEVLLKAHEAAISALKSGNKVSAAYKAASTVVE 364 (1073)
Q Consensus 286 ~~~~dr~L~~G~~dvI~vdlG~~y~GY~sditRT~~Vg-Ps~eq~~~y~~llea~~a~i~~lkPGvt~~dV~~aa~~~l~ 364 (1073)
+.++++.|+.| |+|++|+|++|+|||+|++||+++| |+++|+++|+.+.++++++++.++||+++.+|++++.++++
T Consensus 63 ~~~~~~~i~~g--d~v~~d~g~~~~gy~~d~~rt~~~g~~~~~~~~~~~~~~~~~~~~~~~i~pG~~~~ei~~~~~~~~~ 140 (207)
T cd01066 63 YRPDDRRLQEG--DLVLVDLGGVYDGYHADLTRTFVIGEPSDEQRELYEAVREAQEAALAALRPGVTAEEVDAAAREVLE 140 (207)
T ss_pred CCCCCCCcCCC--CEEEEEeceeECCCccceeceeEcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 99999999999 9999999999999999999999999 78999999999999999999999999999999999999999
Q ss_pred hcCCccccccCCccccccccccccCCCcccCCCCceecCCcEEEEeeccccccCCCCCCCCCeeeEEEEEEEEEeCCCc
Q 001468 365 KDAPELAANLTRNAGTGIGLEFRESGLSLNAKNDRILKAGMVFNVSLGFQNLQTENKNPKTQKFSVLLADTVIVGEKVP 443 (1073)
Q Consensus 365 ~~Gp~l~~~~~h~~GHgIGle~~E~p~~l~~~~~~~L~~GMVf~IEpG~~~l~~~~~~~~~~~~gvriEDTVlVte~G~ 443 (1073)
+.| +...+.|.+|||||+.+||.|. +.+.+..+|++||||+|||+++. ++.+|+++||||+||++|+
T Consensus 141 ~~g--~~~~~~~~~Gh~iG~~~~e~~~-~~~~~~~~l~~gmv~~iep~~~~---------~~~~g~~~ed~v~vt~~g~ 207 (207)
T cd01066 141 EHG--LGPNFGHRTGHGIGLEIHEPPV-LKAGDDTVLEPGMVFAVEPGLYL---------PGGGGVRIEDTVLVTEDGP 207 (207)
T ss_pred HcC--ccccCCCCCccccCcccCCCCC-cCCCCCCCcCCCCEEEECCEEEE---------CCCcEEEeeeEEEEeCCCC
Confidence 999 6567889999999999999995 88889999999999999999983 3468999999999999985
No 30
>cd01089 PA2G4-like Related to aminopepdidase M, this family contains proliferation-associated protein 2G4. Family members have been implicated in cell cycle control.
Probab=99.97 E-value=6.7e-31 Score=284.36 Aligned_cols=214 Identities=19% Similarity=0.201 Sum_probs=175.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCHHHHHHHHHHHHHccch-hhhh--cccCCCCCCCCCeEEeCCCCCC
Q 001468 206 LTNIKKAAFLSSSVMKQFVVPKLEKVIDEEKKVSHSSLMDETEKAILEPAR-IKVK--LKAENVDICYPPIFQSGGEFDL 282 (1073)
Q Consensus 206 I~~iR~Aa~ia~~a~~~~~~~~i~~iid~e~GvtE~eLa~~ie~~l~~~gk-~~~~--~g~~~~~~~y~piV~SG~n~~l 282 (1073)
+..||+|++|++.++. ++.+.++ +|+|+.+|+..++..+..... +... .+. ..++|+++|++ |...
T Consensus 1 ~~~~r~A~~I~~~~~~-~~~~~i~------pG~te~ei~~~~e~~i~~~~~~~~~~~~~g~--~g~~~~~~v~~--n~~~ 69 (228)
T cd01089 1 VTKYKTAGQIANKVLK-QVISLCV------PGAKVVDLCEKGDKLILEELGKVYKKEKKLE--KGIAFPTCISV--NNCV 69 (228)
T ss_pred CHHHHHHHHHHHHHHH-HHHHhcc------CCCcHHHHHHHHHHHHHHhhcccccCccccc--CCCCcCeEecc--Ccee
Confidence 3689999999999999 8888888 599999999888877765211 1111 222 25678888875 4433
Q ss_pred CCCCc----CCCcccccCCcceEEEeeceeeCCeEeeeEEEEEec-CCh-----HHHHHHHHHHHHHHHHHHHcCCCCCH
Q 001468 283 KPSAS----SNDNYLYYDSTSVIICAVGSRYNSYCSNVARTFLID-ANT-----VQSKAYEVLLKAHEAAISALKSGNKV 352 (1073)
Q Consensus 283 ~~h~~----~~dr~L~~G~~dvI~vdlG~~y~GY~sditRT~~Vg-Ps~-----eq~~~y~~llea~~a~i~~lkPGvt~ 352 (1073)
+|+. +++++|+.| |+|++|+|+.|+||++|++|||++| |++ +++++|++++++++++++++|||+++
T Consensus 70 -~H~~p~~~~~~~~l~~G--d~v~iD~g~~~~GY~sD~tRT~~vG~~~~~~~~~~~~~~~~~~~ea~~~~~~~~kpG~~~ 146 (228)
T cd01089 70 -CHFSPLKSDATYTLKDG--DVVKIDLGCHIDGYIAVVAHTIVVGAEAETPVTGKKADVIAAAHYALEAALRLLRPGNQN 146 (228)
T ss_pred -ecCCCCCCCCCcccCCC--CEEEEEEEEEECCEEEEEEEEEEeCCcCccccchHHHHHHHHHHHHHHHHHHHhCCCCcH
Confidence 6666 478899999 9999999999999999999999998 553 89999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCc-cccccCCccccccccccccCCCcccCCCCceecCCcEEEEeeccccccCCCCCCCCCeeeEE
Q 001468 353 SAAYKAASTVVEKDAPE-LAANLTRNAGTGIGLEFRESGLSLNAKNDRILKAGMVFNVSLGFQNLQTENKNPKTQKFSVL 431 (1073)
Q Consensus 353 ~dV~~aa~~~l~~~Gp~-l~~~~~h~~GHgIGle~~E~p~~l~~~~~~~L~~GMVf~IEpG~~~l~~~~~~~~~~~~gvr 431 (1073)
+||++++++++.+.|.. +..++.|++||++| +++.+. +-..+|++||||++||+++ + ++.++++
T Consensus 147 ~dv~~a~~~~~~~~G~~~~~~~~~h~~g~~~~--~~~~~~----~~~~~l~~gmvf~~ep~~~-~--------~g~~~~~ 211 (228)
T cd01089 147 SDITEAIQKVIVDYGCTPVEGVLSHQLKRVVS--SGEGKA----KLVECVKHGLLFPYPVLYE-K--------EGEVVAQ 211 (228)
T ss_pred HHHHHHHHHHHHHcCCEEecCccccCcCceEe--cCCCCc----cchhhccCCcccccceeEc-c--------CCCeEEE
Confidence 99999999999999921 34566788888554 455441 1268899999999999998 3 6789999
Q ss_pred EEEEEEEeCCCceeccc
Q 001468 432 LADTVIVGEKVPDIVTS 448 (1073)
Q Consensus 432 iEDTVlVte~G~evLT~ 448 (1073)
++|||+||++|+++||.
T Consensus 212 ~~~Tv~vt~~G~e~lt~ 228 (228)
T cd01089 212 FKLTVLLTPNGVTVLTG 228 (228)
T ss_pred EEEEEEEcCCCCeeCCC
Confidence 99999999999999983
No 31
>COG5165 POB3 Nucleosome-binding factor SPN, POB3 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]
Probab=99.97 E-value=1.3e-30 Score=281.13 Aligned_cols=210 Identities=18% Similarity=0.248 Sum_probs=186.2
Q ss_pred ceEEEEecceeeecCCCCceeeeeccccceeeeccCCCccEEEEEEEcccceeeCceeccee--eEEEEeeeeEeecCCC
Q 001468 701 GSLEAHTNGFRYSTSRPDERVDVMYGNIKHAFFQPAEREMITLLHFHLHNHIMVGNKKTKDV--QFYIEVMDVVQTLGGG 778 (1073)
Q Consensus 701 G~le~h~ng~r~~~~~~~~~~dily~nIk~~ffqp~~~e~~v~~h~~L~~pi~~Gkkk~~dv--QF~~e~~~~~~~~~~~ 778 (1073)
=.+.++.|.+|+++ +++.++|.|+.||.+|.+|+.++.|+++++++.+||+||||+||++ ||.++. ++.++|+
T Consensus 225 ydid~y~~~lRLrG--ktYdyKi~y~sI~~l~~LpK~dd~h~~~Vig~ePPlRQGQTrYpflV~qF~kde-d~Ev~Ln-- 299 (508)
T COG5165 225 YDIDFYRDYLRLRG--KTYDYKIYYKSIKMLYVLPKIDDGHRYVVIGAEPPLRQGQTRYPFLVVQFQKDE-DVEVELN-- 299 (508)
T ss_pred ccchhhhhhhhhcc--cccceeeeeeeeeEEEEeccCCCccEEEEEecCCcccCCCccCCeEEEEEeccc-ceeeeec--
Confidence 36899999999998 7999999999999999999999999999999999999999999955 998544 3444444
Q ss_pred cCCCCChhHHHHHHHHHHHHHHHH-HHHHHHHHHHhhccCCCcccCCCceeeccCcccceeecccCceeeeeeCccccee
Q 001468 779 KRSAYDPDEVEEEQRERARKNKIN-MDFQNFVNRVNDLWGQPQFKAFDLEFDQPLRELGFHGVPHKASAFIVPTSSCLVE 857 (1073)
Q Consensus 779 r~~~~d~de~~~eq~e~~~~~~ln-~~f~~f~~~v~~~~~~~~~~~~~~~f~~p~~~l~f~g~~~~~~~~l~pt~~clv~ 857 (1073)
=+||-.+|.+..+++..+. ..|..|.+.++.|+..... .|.+|.+.+...+..|..+...+.|||+-+|+++
T Consensus 300 -----vede~~~e~y~dklK~~Yd~~~~ev~s~v~~gLt~rkvv--~p~ef~S~~g~~av~Cs~KAnEGqLYpLD~~flF 372 (508)
T COG5165 300 -----VEDEDYEENYKDKLKGEYDGLLSEVFSEVMEGLTVRKVV--RPSEFESRDGMRAVRCSMKANEGQLYPLDDCFLF 372 (508)
T ss_pred -----cchhhhhhhHHHhhhhhccchHHHHHHHHHHhhcceeee--cchhhcccCCceeeeeeeeccCceEeeccceEEe
Confidence 1344455556666666666 7788899999999877665 7899999999999999999999999999999999
Q ss_pred eccCCcEEEEcCceeEEEEEeecC---CCcceeEEEEEecCCCCeEEEecccCCChhhHHHHhhcCCceee
Q 001468 858 LIETPFVVITLSEIEIVNLERVGL---GQKNFDMTIVFKDFKRDVLRIDSIPSSSLDGIKEWLDTTDLKYY 925 (1073)
Q Consensus 858 l~e~P~~vi~l~eie~v~feRv~~---~~k~FD~~~v~kd~~~~~~~i~~I~~~~l~~ik~wl~~~~i~~~ 925 (1073)
|+ +|.+.+.++||..|+|+|++. +.|||||+|+++ +..+++|++|.+.++..|.+||.|++|+..
T Consensus 373 lp-Kptl~l~~sdis~V~~SRig~ss~~arTFDlt~~lr--s~~sytF~nisk~Eq~aLeqfl~sK~ik~~ 440 (508)
T COG5165 373 LP-KPTLRLDLSDISLVEFSRIGLSSMQARTFDLTLFLR--SPGSYTFNNISKDEQGALEQFLHSKGIKAR 440 (508)
T ss_pred cc-CceEEeecccceEEEEeecccchhhhceeeEEEEEe--cCCceeecCcCHHHHHHHHHHHhccCceec
Confidence 99 999999999999999999987 889999999999 668999999999999999999999999965
No 32
>COG0024 Map Methionine aminopeptidase [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=9.1e-29 Score=266.96 Aligned_cols=233 Identities=22% Similarity=0.253 Sum_probs=195.8
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCHHHHHHHHHHHHHccchhhhhcccCCCCCCCCCeEEeCC
Q 001468 199 AIKDDTELTNIKKAAFLSSSVMKQFVVPKLEKVIDEEKKVSHSSLMDETEKAILEPARIKVKLKAENVDICYPPIFQSGG 278 (1073)
Q Consensus 199 ~VKd~~EI~~iR~Aa~ia~~a~~~~~~~~i~~iid~e~GvtE~eLa~~ie~~l~~~gk~~~~~g~~~~~~~y~piV~SG~ 278 (1073)
.+|+++||+.||+|++|+..+++ .+.+.++ ||+|-.||...+++.+.+.+.+...+|.. .+.|+ ++..-
T Consensus 4 ~ikt~~eiek~r~Ag~i~a~~l~-~~~~~v~------pGvtt~Eld~~~~~~i~~~ga~pa~~gy~--g~~~~--~ciSv 72 (255)
T COG0024 4 SIKTPEEIEKMREAGKIAAKALK-EVASLVK------PGVTTLELDEIAEEFIREKGAYPAFLGYK--GFPFP--TCISV 72 (255)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHH-HHHHHcC------CCCCHHHHHHHHHHHHHHcCceehhccCc--CCCcc--eEeeh
Confidence 38999999999999999999998 8888877 69999999999999999866665555543 23443 44444
Q ss_pred CCCCCCCCcCC-CcccccCCcceEEEeeceeeCCeEeeeEEEEEecC-C-hHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Q 001468 279 EFDLKPSASSN-DNYLYYDSTSVIICAVGSRYNSYCSNVARTFLIDA-N-TVQSKAYEVLLKAHEAAISALKSGNKVSAA 355 (1073)
Q Consensus 279 n~~l~~h~~~~-dr~L~~G~~dvI~vdlG~~y~GY~sditRT~~VgP-s-~eq~~~y~~llea~~a~i~~lkPGvt~~dV 355 (1073)
|-.. .|+.|+ ++.|+.| |+|.+|+|+.++||.+|.++||.||+ + ...+++.+++.+|+.++++.+|||+++++|
T Consensus 73 Ne~v-~HgiP~d~~vlk~G--Div~IDvg~~~dG~~~Dsa~T~~vg~~~~~~~~~L~~~t~eal~~~I~~vkpG~~l~~I 149 (255)
T COG0024 73 NEVV-AHGIPGDKKVLKEG--DIVKIDVGAHIDGYIGDTAITFVVGEVSDEDAKRLLEATKEALYAGIEAVKPGARLGDI 149 (255)
T ss_pred hhee-eecCCCCCcccCCC--CEEEEEEEEEECCeeeeEEEEEECCCCChHHHHHHHHHHHHHHHHHHHhccCCCCHHHH
Confidence 5444 788887 5689999 99999999999999999999999993 4 477779999999999999999999999999
Q ss_pred HHHHHHHHHhcCCccccccCCccccccccccccCCCcccCCC---CceecCCcEEEEeeccccccC-------CCCC--C
Q 001468 356 YKAASTVVEKDAPELAANLTRNAGTGIGLEFRESGLSLNAKN---DRILKAGMVFNVSLGFQNLQT-------ENKN--P 423 (1073)
Q Consensus 356 ~~aa~~~l~~~Gp~l~~~~~h~~GHgIGle~~E~p~~l~~~~---~~~L~~GMVf~IEpG~~~l~~-------~~~~--~ 423 (1073)
-+++.+++++.| |.. ....+|||||..+|+.|.+++... ..+|++||||+|||.+..-.. +.|. +
T Consensus 150 g~aIq~~~~~~G--~~v-Vr~~~GHgig~~~He~p~ip~y~~~~~~~~l~~Gmv~aIEPmi~~G~~~~~~~~~d~Wt~~t 226 (255)
T COG0024 150 GRAIQEYAESRG--FSV-VRNLTGHGIGRELHEEPSIPNYGKDGTGVRLKEGMVFAIEPMINTGSGEVVEGPSDRWTLVT 226 (255)
T ss_pred HHHHHHHHHHcC--CEE-eecccCCccCcccCCCCeeccccCCCCCcccCCCCEEEEeeEEEcCCCceEecCCCCeEEEe
Confidence 999999999999 432 244589999999999998776332 479999999999999873211 2255 6
Q ss_pred CCCeeeEEEEEEEEEeCCCceeccc
Q 001468 424 KTQKFSVLLADTVIVGEKVPDIVTS 448 (1073)
Q Consensus 424 ~~~~~gvriEDTVlVte~G~evLT~ 448 (1073)
+++....+.|+||+||++|+++||.
T Consensus 227 ~d~~~~aq~EHTv~Vt~~g~eilT~ 251 (255)
T COG0024 227 KDGSLSAQFEHTVIVTEDGCEILTL 251 (255)
T ss_pred CCCCEEeEEEEEEEEeCCCcEEeeC
Confidence 7888999999999999999999996
No 33
>KOG2738 consensus Putative methionine aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=5e-28 Score=257.08 Aligned_cols=240 Identities=18% Similarity=0.207 Sum_probs=207.7
Q ss_pred cccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCHHHHHHHHHHHHHccchhhhhcccCCCCCCCCCeEE
Q 001468 196 DLFAIKDDTELTNIKKAAFLSSSVMKQFVVPKLEKVIDEEKKVSHSSLMDETEKAILEPARIKVKLKAENVDICYPPIFQ 275 (1073)
Q Consensus 196 ~lR~VKd~~EI~~iR~Aa~ia~~a~~~~~~~~i~~iid~e~GvtE~eLa~~ie~~l~~~gk~~~~~g~~~~~~~y~piV~ 275 (1073)
.-..|.++++|+.||+||+++..++. ++...++ ||+|..||...+..++.+.|.|++.++. ..||-.++
T Consensus 112 ~~i~i~~~e~ie~mR~ac~LarevLd-~Aa~~v~------PgvTTdEiD~~VH~a~Ierg~YPSPLnY----y~FPKS~C 180 (369)
T KOG2738|consen 112 NEIKILDPEGIEGMRKACRLAREVLD-YAATLVR------PGVTTDEIDRAVHNAIIERGAYPSPLNY----YGFPKSVC 180 (369)
T ss_pred cceeccCHHHHHHHHHHHHHHHHHHH-HHhhhcC------CCccHHHHHHHHHHHHHhcCCcCCCccc----CCCchhhh
Confidence 35678999999999999999999999 8888888 6999999999999998887777665553 46777788
Q ss_pred eCCCCCCCCCCcCCCcccccCCcceEEEeeceeeCCeEeeeEEEEEec-CChHHHHHHHHHHHHHHHHHHHcCCCCCHHH
Q 001468 276 SGGEFDLKPSASSNDNYLYYDSTSVIICAVGSRYNSYCSNVARTFLID-ANTVQSKAYEVLLKAHEAAISALKSGNKVSA 354 (1073)
Q Consensus 276 SG~n~~l~~h~~~~dr~L~~G~~dvI~vdlG~~y~GY~sditRT~~Vg-Ps~eq~~~y~~llea~~a~i~~lkPGvt~~d 354 (1073)
..-|-.+ .|+.|+.|+|+.| |+|.+|+..-|+||++|+.+||+|| .++..+++-+...++++.+|+.+|||+++.+
T Consensus 181 TSVNEvi-CHGIPD~RpLedG--DIvNiDVtvY~~GyHGDlneTffvG~Vde~~k~LVkvT~EcL~kaI~~~kpGv~fre 257 (369)
T KOG2738|consen 181 TSVNEVI-CHGIPDSRPLEDG--DIVNIDVTVYLNGYHGDLNETFFVGNVDEKAKKLVKVTRECLEKAIAIVKPGVSFRE 257 (369)
T ss_pred cchhhee-ecCCCCcCcCCCC--CEEeEEEEEEeccccCccccceEeeccCHHHHHHHHHHHHHHHHHHHHhCCchhHHH
Confidence 8888776 8999999999999 9999999999999999999999998 7999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCccccccCCccccccccccccCCCccc-CC--CCceecCCcEEEEeecccccc-----CC-CCC--C
Q 001468 355 AYKAASTVVEKDAPELAANLTRNAGTGIGLEFRESGLSLN-AK--NDRILKAGMVFNVSLGFQNLQ-----TE-NKN--P 423 (1073)
Q Consensus 355 V~~aa~~~l~~~Gp~l~~~~~h~~GHgIGle~~E~p~~l~-~~--~~~~L~~GMVf~IEpG~~~l~-----~~-~~~--~ 423 (1073)
|-+.+.+...+.| |. .....+|||||--||-.|.+.. ++ ...++++||+|+|||.+..-. .| +|. .
T Consensus 258 iG~iI~kha~~~g--~s-VVr~ycGHGig~~FH~~PnipHya~n~a~GvM~~G~tFTIEPmit~G~~~d~tWPD~WT~vT 334 (369)
T KOG2738|consen 258 IGNIIQKHATKNG--YS-VVRSYCGHGIGRVFHCAPNIPHYAKNKAPGVMKPGQTFTIEPMITIGTWEDITWPDDWTAVT 334 (369)
T ss_pred HHHHHHHHhhhcC--ce-eehhhhccccccccccCCCchhhcccCCcceeecCceEEeeeeecccccccccCCCCceEEe
Confidence 9999999999999 43 2345699999999999995433 22 347899999999999987211 12 254 5
Q ss_pred CCCeeeEEEEEEEEEeCCCceeccccccc
Q 001468 424 KTQKFSVLLADTVIVGEKVPDIVTSKSSK 452 (1073)
Q Consensus 424 ~~~~~gvriEDTVlVte~G~evLT~~~pk 452 (1073)
.+|..+.++|+|+|||++|+|+||...|.
T Consensus 335 aDG~~sAQFEhTlLVT~tG~EILT~r~~~ 363 (369)
T KOG2738|consen 335 ADGKRSAQFEHTLLVTETGCEILTKRLPN 363 (369)
T ss_pred cCCceecceeeEEEEecccceehhcccCC
Confidence 78889999999999999999999974443
No 34
>PTZ00053 methionine aminopeptidase 2; Provisional
Probab=99.95 E-value=2.5e-26 Score=266.97 Aligned_cols=198 Identities=14% Similarity=0.134 Sum_probs=167.6
Q ss_pred cccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCHHHHHHHHHHHHHccchhhhhcccCCCCCCCCCeEE
Q 001468 196 DLFAIKDDTELTNIKKAAFLSSSVMKQFVVPKLEKVIDEEKKVSHSSLMDETEKAILEPARIKVKLKAENVDICYPPIFQ 275 (1073)
Q Consensus 196 ~lR~VKd~~EI~~iR~Aa~ia~~a~~~~~~~~i~~iid~e~GvtE~eLa~~ie~~l~~~gk~~~~~g~~~~~~~y~piV~ 275 (1073)
+.+..+|++||+.||+||+|+..+++ ++...|+ ||+|+.+|++.++..+.... ...|.. ..++||++|
T Consensus 148 ~~~~~~s~~EI~~~R~AaeIa~~vl~-~~~~~Ik------pG~se~EIa~~ie~~ir~~~---~~~G~~-~g~aFPt~v- 215 (470)
T PTZ00053 148 RELEKLSEEQYQDLRRAAEVHRQVRR-YAQSVIK------PGVKLIDICERIESKSRELI---EADGLK-CGWAFPTGC- 215 (470)
T ss_pred CccccCCHHHHHHHHHHHHHHHHHHH-HHHHHhh------CCCCHHHHHHHHHHHHHHHH---HhcCCc-ccCCCCcee-
Confidence 34455899999999999999999999 8999888 69999999999998776420 111321 247788755
Q ss_pred eCCCCCCCCCCcCC---CcccccCCcceEEEeeceeeCCeEeeeEEEEEecCChHHHHHHHHHHHHHHHHHHHcCCCCCH
Q 001468 276 SGGEFDLKPSASSN---DNYLYYDSTSVIICAVGSRYNSYCSNVARTFLIDANTVQSKAYEVLLKAHEAAISALKSGNKV 352 (1073)
Q Consensus 276 SG~n~~l~~h~~~~---dr~L~~G~~dvI~vdlG~~y~GY~sditRT~~VgPs~eq~~~y~~llea~~a~i~~lkPGvt~ 352 (1073)
+.|... +|+.|+ ++.|+.| |+|.+|+|+.|+|||+|++||++++ ++++++|+++++|+.+++++++||+++
T Consensus 216 -S~N~~a-aH~tP~~gd~~vLk~G--DvVkID~G~~vdGYiaD~ArTv~vg--~~~~~L~eAv~eA~~aaI~~~kpGv~~ 289 (470)
T PTZ00053 216 -SLNHCA-AHYTPNTGDKTVLTYD--DVCKLDFGTHVNGRIIDCAFTVAFN--PKYDPLLQATKDATNTGIKEAGIDVRL 289 (470)
T ss_pred -ecCccc-cCCCCCCCCCcEecCC--CeEEEEEeEEECCEEEeEEEEEEeC--HHHHHHHHHHHHHHHHHHHHhcCCCcH
Confidence 345554 788886 6789999 9999999999999999999999997 689999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCccc---cc-----cCCcccccccc-cccc---CCCcccCCCCceecCCcEEEEeeccc
Q 001468 353 SAAYKAASTVVEKDAPELA---AN-----LTRNAGTGIGL-EFRE---SGLSLNAKNDRILKAGMVFNVSLGFQ 414 (1073)
Q Consensus 353 ~dV~~aa~~~l~~~Gp~l~---~~-----~~h~~GHgIGl-e~~E---~p~~l~~~~~~~L~~GMVf~IEpG~~ 414 (1073)
+||.+++++++++.| |. .+ +.|.+|||||+ .+|+ .| .+.+++..+|++||||+|||.+.
T Consensus 290 ~dI~~AIqevies~G--~e~~Gk~f~~k~I~nltGHgIG~y~iHe~k~iP-~v~~~~~~~LeeGmVfaIEPf~s 360 (470)
T PTZ00053 290 SDIGAAIQEVIESYE--VEIKGKTYPIKSIRNLNGHSIGPYIIHGGKSVP-IVKGGENTRMEEGELFAIETFAS 360 (470)
T ss_pred HHHHHHHHHHHHHcC--CcccCcccccccccCCcccCCCCccccCCCcCC-eeCCCCCCEecCCCEEEEcceee
Confidence 999999999999999 53 33 37899999997 8998 45 35677889999999999999876
No 35
>TIGR00495 crvDNA_42K 42K curved DNA binding protein. Proteins identified by this model have been identified in a number of species as a nuclear (but not nucleolar) protein with a cell cycle dependence. Various names given to members of this family have included cell cycle protein p38-2G4, DNA-binding protein GBP16, and proliferation-associated protein 1. This protein is closely related to methionine aminopeptidase, a cobolt-binding protein.
Probab=99.95 E-value=6.4e-26 Score=262.14 Aligned_cols=202 Identities=17% Similarity=0.204 Sum_probs=167.1
Q ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCHHHHHHHHHHHHHccchhhhhc-ccCCCCCCCCCeEEe
Q 001468 198 FAIKDDTELTNIKKAAFLSSSVMKQFVVPKLEKVIDEEKKVSHSSLMDETEKAILEPARIKVKL-KAENVDICYPPIFQS 276 (1073)
Q Consensus 198 R~VKd~~EI~~iR~Aa~ia~~a~~~~~~~~i~~iid~e~GvtE~eLa~~ie~~l~~~gk~~~~~-g~~~~~~~y~piV~S 276 (1073)
-.+|+++||+.||+||+|+..+++ ++.+.++ ||+|+.+|++.++..+.+.+...... .....+++|+++|.
T Consensus 11 ~~i~~~~eI~~~r~Aa~Ia~~~l~-~~~~~ik------pG~t~~el~~~~~~~i~~~~a~~~~~~~~~~~g~afpt~vS- 82 (389)
T TIGR00495 11 YSLSNPEVVTKYKMAGEIANNVLK-SVVEACS------PGAKVVDICEKGDAFIMEETAKIFKKEKEMEKGIAFPTCIS- 82 (389)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHH-HHHHhCC------CCCCHHHHHHHHHHHHHHhhhhhhcccccccCCCCCCeEEe-
Confidence 468999999999999999999999 8999988 69999999999988887543211100 01123678888776
Q ss_pred CCCCCCCCCCcC--C--CcccccCCcceEEEeeceeeCCeEeeeEEEEEec------CChHHHHHHHHHHHHHHHHHHHc
Q 001468 277 GGEFDLKPSASS--N--DNYLYYDSTSVIICAVGSRYNSYCSNVARTFLID------ANTVQSKAYEVLLKAHEAAISAL 346 (1073)
Q Consensus 277 G~n~~l~~h~~~--~--dr~L~~G~~dvI~vdlG~~y~GY~sditRT~~Vg------Ps~eq~~~y~~llea~~a~i~~l 346 (1073)
.|... +|+.| + ++.|+.| |+|.+|+|+.|+|||+|++||++|| +++++.++|+++.+|++++++++
T Consensus 83 -vN~~v-~H~~P~~~d~~~~Lk~G--DvVkIDlG~~idGY~aD~arTv~vG~~~~~~~t~~~~~l~~aa~~A~~aai~~v 158 (389)
T TIGR00495 83 -VNNCV-GHFSPLKSDQDYILKEG--DVVKIDLGCHIDGFIALVAHTFVVGVAQEEPVTGRKADVIAAAHLAAEAALRLV 158 (389)
T ss_pred -cCCee-eCCCCCCCCCCcCcCCC--CEEEEEEEEEECCEEEEEEEEEEECCcccccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 44444 78887 2 4789999 9999999999999999999999998 35789999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCccccccCCcccccccccccc-CCCc-ccCC-------CCceecCCcEEEEeeccc
Q 001468 347 KSGNKVSAAYKAASTVVEKDAPELAANLTRNAGTGIGLEFRE-SGLS-LNAK-------NDRILKAGMVFNVSLGFQ 414 (1073)
Q Consensus 347 kPGvt~~dV~~aa~~~l~~~Gp~l~~~~~h~~GHgIGle~~E-~p~~-l~~~-------~~~~L~~GMVf~IEpG~~ 414 (1073)
|||++++||+.+++++++++| +.. ....+|||||..+|+ .|.+ .++. ....|++||||+|||++.
T Consensus 159 kPG~~~~dI~~ai~~v~~~~G--~~~-v~~~~gH~igr~~~~g~~~Ii~~~~~~~~~~~~~~~le~gev~aIEp~vs 232 (389)
T TIGR00495 159 KPGNTNTQVTEAINKVAHSYG--CTP-VEGMLSHQLKQHVIDGEKVIISNPSDSQKKDHDTAEFEENEVYAVDILVS 232 (389)
T ss_pred CCCCcHHHHHHHHHHHHHHcC--Cee-cCCceeecccceeccCCCeeeecCCccccCCCCCCEecCCCEEEEeeeec
Confidence 999999999999999999999 543 456799999999998 5642 2322 356899999999999886
No 36
>KOG2413 consensus Xaa-Pro aminopeptidase [Amino acid transport and metabolism]
Probab=99.94 E-value=1e-26 Score=268.37 Aligned_cols=373 Identities=18% Similarity=0.221 Sum_probs=276.9
Q ss_pred ccCCHHHHHHHHHHHHHHHhccCCCCCCCccEEEEeCCCCCCcccccccccceEeecCCcCCc--------EEEEEeCCc
Q 001468 25 YAINLDNFSKRLKMLYSHWTEHNSDLWGDSNALAVATPPVSEDLRYLKSSALNVWLVGYEFPE--------TIMVFLKKQ 96 (1073)
Q Consensus 25 ~~i~~~~f~~Rl~rL~~~m~~~~~~~~~glDaLli~~g~~~~~~~Y~ks~al~~wLtGye~p~--------tlll~t~~~ 96 (1073)
..+........+..||..|+. .+++|+|++.-. + +.||++....+ ++++++.++
T Consensus 167 ~~~~G~~~~~Kv~~LR~~l~~------~~~~a~Vvs~Ld---e---------IaWllNLRGsDipynPv~~sY~~it~de 228 (606)
T KOG2413|consen 167 LEFAGLSVDDKVDNLRKKLKE------KKCDAFVVTALD---E---------IAWLLNLRGSDIPYNPVFYSYAIITMDE 228 (606)
T ss_pred ccccCcchhHHHHHHHHHHhh------cCCcEEehhhHH---H---------HHHHHhcccCcCCCCchhhhhhhhhhhh
Confidence 446666778888999999998 899999988866 3 67998766532 577888999
Q ss_pred EEEEEeCCccchHHHHHhhcccccceEEEEEeCCCCCCCCChHHHHHHHhhhcccCCCCCCCEEEEeCCCCCcHHHHHHH
Q 001468 97 IHFLCSQKKASLLEVIKKSAKEAVGIEVVIHVKGKTDDGSGLMDKIFGAVNDQSKSGGQNSPVVGHISREAPEGKLLETW 176 (1073)
Q Consensus 97 ~~ll~s~kK~~~le~~~~~~~~~~~vei~~~~kd~~d~~~~~~~~l~~~Lk~~~~~~~~~~~rIGv~~kd~~~g~~~~~l 176 (1073)
+.|++..+|.. .+....- ....+++..|. ..+..+...... ....+|.+.+.-.+ . .
T Consensus 229 i~lfvd~~k~~-~~~~~~~--~~~~v~i~pY~--------~i~~~i~~~~~~------~~~~~i~ia~~~~~--~----i 285 (606)
T KOG2413|consen 229 IFLFVDNSKLS-DESKKHL--REDGVEIRPYD--------QIWSDIKNWASA------FADKKIWISPETNY--G----I 285 (606)
T ss_pred hheeecCcccC-chhHHHH--hhCceeeeeHH--------HHHHHHHHHhcc------cCceeEeeccccee--e----e
Confidence 99999887654 2222211 02457777763 334444443331 23455665542110 0 1
Q ss_pred HHHHhhcCceEEeCCcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCHHHHHHHHHHHHHccch
Q 001468 177 NEKLKKANFALSDVSNGFSDLFAIKDDTELTNIKKAAFLSSSVMKQFVVPKLEKVIDEEKKVSHSSLMDETEKAILEPAR 256 (1073)
Q Consensus 177 ~~~l~~~~~e~vDvs~~l~~lR~VKd~~EI~~iR~Aa~ia~~a~~~~~~~~i~~iid~e~GvtE~eLa~~ie~~l~~~gk 256 (1073)
...++ .-..+.....+..++++|.+.|++.||.|----..|+. .+...+..-+..+..+||.+++..++..-...
T Consensus 286 ~~~i~--~~~~~~~~Spi~~~kAiKN~~E~~gmr~shirD~~Alv-e~~~wle~~~~~g~~itE~~~A~kle~fR~~~-- 360 (606)
T KOG2413|consen 286 GELIG--EDHSMIDPSPISRAKAIKNDDELKGMRNSHIRDGAALV-EYFAWLEKELHKGYTITEYDAADKLEEFRSRQ-- 360 (606)
T ss_pred ccccc--ccccccccCHHHHHHHhcChHHhhhhhhcchhhHHHHH-HHHHHHhhhhhcCcccchhhHHHHHHHHHHhh--
Confidence 11112 22335566778899999999999999887655555555 55555554444444599999999999876542
Q ss_pred hhhhcccCCCCCCCCCeEEe-CCCCCCCCCCcCCC---cccccCCcceEEEeeceeeCCeEeeeEEEEEec-CChHHHHH
Q 001468 257 IKVKLKAENVDICYPPIFQS-GGEFDLKPSASSND---NYLYYDSTSVIICAVGSRYNSYCSNVARTFLID-ANTVQSKA 331 (1073)
Q Consensus 257 ~~~~~g~~~~~~~y~piV~S-G~n~~l~~h~~~~d---r~L~~G~~dvI~vdlG~~y~GY~sditRT~~Vg-Ps~eq~~~ 331 (1073)
....+.+|++|.+| |+|.++ +|+.|.. +.+.+. .+.+||-|+.|.--.+|+|||+.+| ||+++++.
T Consensus 361 ------~~fmglSFeTIS~s~G~NgAv-iHYsP~~e~n~~i~~~--kiyL~DSGaQY~DGTTDvTRT~HfgePs~eek~~ 431 (606)
T KOG2413|consen 361 ------DHFMGLSFETISSSVGPNGAV-IHYSPPAETNRIVSPD--KIYLCDSGAQYLDGTTDVTRTVHFGEPTAEEKEA 431 (606)
T ss_pred ------ccccCcCcceeeccCCCCcee-eecCCCccccceecCc--eEEEEccCcccccCccceeEEEecCCCCHHHHHH
Confidence 12346789999978 999998 8887764 477777 8999999999999999999999998 99999999
Q ss_pred HHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhcCCccccccCCccccccc--cccccCCCcccC---CCCceecCCc
Q 001468 332 YEVLLKAHEAAISALKS-GNKVSAAYKAASTVVEKDAPELAANLTRNAGTGIG--LEFRESGLSLNA---KNDRILKAGM 405 (1073)
Q Consensus 332 y~~llea~~a~i~~lkP-Gvt~~dV~~aa~~~l~~~Gp~l~~~~~h~~GHgIG--le~~E~p~~l~~---~~~~~L~~GM 405 (1073)
|..++..+-++..+.-| |+...-+...|+..+.+.| ..|.|.+|||+| +.+||+|..++. .++..|++||
T Consensus 432 yT~VLkGhi~la~~vFP~~t~g~~lD~laR~~LW~~g----LDy~HgTGHGVG~fLnVhE~P~~is~r~~~~~~~l~ag~ 507 (606)
T KOG2413|consen 432 YTLVLKGHIALARAVFPKGTKGSVLDALARSALWKAG----LDYGHGTGHGVGSFLNVHEGPIGIGYRPYSSNFPLQAGM 507 (606)
T ss_pred HHHHHHhhhHhhhcccCCCCCcchhHHHHHHHHHhhc----cccCCCCCcccccceEeccCCceeeeeecCCCchhcCce
Confidence 99999999999988876 8999999999999999999 467899999999 789999977764 3567899999
Q ss_pred EEEEeeccccccCCCCCCCCCeeeEEEEEEEEEeCCCc----------eecccccccchhhhccccCCchh
Q 001468 406 VFNVSLGFQNLQTENKNPKTQKFSVLLADTVIVGEKVP----------DIVTSKSSKAVKDVAYSFNEDDE 466 (1073)
Q Consensus 406 Vf~IEpG~~~l~~~~~~~~~~~~gvriEDTVlVte~G~----------evLT~~~pk~l~~I~~~~~d~~~ 466 (1073)
|+++|||+|. .+.||+|||+.++|.+.+. +.||- +|.....|.-.+-.++|
T Consensus 508 ~~s~EPGYY~---------dg~fGIRienv~~vvd~~~~~~~~~~L~fe~lT~-vP~q~klid~~LLs~eE 568 (606)
T KOG2413|consen 508 VFSIEPGYYK---------DGEFGIRIENVVEVVDAGTKHNFRGFLTFEPLTL-VPYQTKLIDKSLLSEEE 568 (606)
T ss_pred EeccCCcccc---------cCcceEEEeeEEEEEeccccccccceeeecccee-cceecccCChhhCCHHH
Confidence 9999999994 6889999999999975442 44564 67766666655555444
No 37
>PRK08671 methionine aminopeptidase; Provisional
Probab=99.94 E-value=5.2e-26 Score=254.71 Aligned_cols=183 Identities=16% Similarity=0.156 Sum_probs=161.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCHHHHHHHHHHHHHccchhhhhcccCCCCCCCCCeEEeCCCCCCCC
Q 001468 205 ELTNIKKAAFLSSSVMKQFVVPKLEKVIDEEKKVSHSSLMDETEKAILEPARIKVKLKAENVDICYPPIFQSGGEFDLKP 284 (1073)
Q Consensus 205 EI~~iR~Aa~ia~~a~~~~~~~~i~~iid~e~GvtE~eLa~~ie~~l~~~gk~~~~~g~~~~~~~y~piV~SG~n~~l~~ 284 (1073)
+|+.||+|++|+..++. .+.+.++ +|+|+.||++.++..+.+. |. +++|+++|.+|... +
T Consensus 1 ~i~~~r~A~~I~~~~~~-~~~~~i~------pG~se~ei~~~~~~~i~~~-------g~---~~afp~~vs~n~~~---~ 60 (291)
T PRK08671 1 ELEKYLEAGKIASKVRE-EAAKLIK------PGAKLLDVAEFVENRIREL-------GA---KPAFPCNISINEVA---A 60 (291)
T ss_pred CHHHHHHHHHHHHHHHH-HHHHhcc------CCCcHHHHHHHHHHHHHHc-------CC---ccCCCCEEeeCCCc---c
Confidence 48899999999999999 8888888 5999999999999999753 33 46788888887764 5
Q ss_pred CCcCC---CcccccCCcceEEEeeceeeCCeEeeeEEEEEecCChHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 001468 285 SASSN---DNYLYYDSTSVIICAVGSRYNSYCSNVARTFLIDANTVQSKAYEVLLKAHEAAISALKSGNKVSAAYKAAST 361 (1073)
Q Consensus 285 h~~~~---dr~L~~G~~dvI~vdlG~~y~GY~sditRT~~VgPs~eq~~~y~~llea~~a~i~~lkPGvt~~dV~~aa~~ 361 (1073)
|+.|+ ++.|+.| |+|.+|+|+.|+||++|++||+++| +.++++|+++.+|++++++++|||++++||++++.+
T Consensus 61 H~~p~~~d~~~l~~G--DvV~iD~G~~~dGY~aD~arT~~vG--~~~~~l~~a~~~a~~aai~~ikpG~~~~dv~~~i~~ 136 (291)
T PRK08671 61 HYTPSPGDERVFPEG--DVVKLDLGAHVDGYIADTAVTVDLG--GKYEDLVEASEEALEAAIEVVRPGVSVGEIGRVIEE 136 (291)
T ss_pred CCCCCCCCCcccCCC--CEEEEEEeEEECCEEEEEEEEEEeC--hhHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 66654 6789999 9999999999999999999999999 478999999999999999999999999999999999
Q ss_pred HHHhcCCccccccCCcccccccc-ccccCCCc--ccCCCCceecCCcEEEEeeccc
Q 001468 362 VVEKDAPELAANLTRNAGTGIGL-EFRESGLS--LNAKNDRILKAGMVFNVSLGFQ 414 (1073)
Q Consensus 362 ~l~~~Gp~l~~~~~h~~GHgIGl-e~~E~p~~--l~~~~~~~L~~GMVf~IEpG~~ 414 (1073)
++++.| +.. +.+.+|||||+ .+|+.|.+ +..+++.+|++||||+|||++.
T Consensus 137 vi~~~G--~~~-~~~~~GHgiG~~~~he~p~ip~~~~~~~~~le~GmV~aIEp~~t 189 (291)
T PRK08671 137 TIRSYG--FKP-IRNLTGHGLERYELHAGPSIPNYDEGGGVKLEEGDVYAIEPFAT 189 (291)
T ss_pred HHHHcC--Ccc-cCCCcccCcCCCcccCCCccCccCCCCCceeCCCCEEEEcceEE
Confidence 999999 665 46889999996 88998743 2456789999999999999875
No 38
>TIGR00501 met_pdase_II methionine aminopeptidase, type II. Methionine aminopeptidase (map) is a cobalt-binding enzyme. Bacterial and organellar examples (type I) differ from eukaroytic and archaeal (type II) examples in lacking a region of approximately 60 amino acids between the 4th and 5th cobalt-binding ligands. The role of this protein in general is to produce the mature amino end of cytosolic proteins by removing the N-terminal methionine. This model describes type II, among which the eukaryotic members typically have an N-terminal extension not present in archaeal members. It can act cotranslationally. The enzyme from rat has been shown to associate with translation initiation factor 2 (IF-2) and may have a role in translational regulation.
Probab=99.94 E-value=1.2e-25 Score=251.91 Aligned_cols=185 Identities=15% Similarity=0.153 Sum_probs=160.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCHHHHHHHHHHHHHccchhhhhcccCCCCCCCCCeEEeCCCCCC
Q 001468 203 DTELTNIKKAAFLSSSVMKQFVVPKLEKVIDEEKKVSHSSLMDETEKAILEPARIKVKLKAENVDICYPPIFQSGGEFDL 282 (1073)
Q Consensus 203 ~~EI~~iR~Aa~ia~~a~~~~~~~~i~~iid~e~GvtE~eLa~~ie~~l~~~gk~~~~~g~~~~~~~y~piV~SG~n~~l 282 (1073)
-+||+.||+|++|+..+++ .+.+.++ +|+++.||++.++..+.+. |+ ..+||++|..+...
T Consensus 2 ~~~i~~~r~A~~I~~~~~~-~~~~~i~------~G~se~el~~~~e~~~~~~-------g~---~~aFp~~vs~n~~~-- 62 (295)
T TIGR00501 2 IERAEKWIEAGKIHSKVRR-EAADRIV------PGVKLLEVAEFVENRIREL-------GA---EPAFPCNISINECA-- 62 (295)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHCc------CCCCHHHHHHHHHHHHHHc-------CC---CCCCCcceecCCEe--
Confidence 3789999999999999999 8888888 5999999999999999753 33 36888888765432
Q ss_pred CCCCcCC---CcccccCCcceEEEeeceeeCCeEeeeEEEEEecCChHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 001468 283 KPSASSN---DNYLYYDSTSVIICAVGSRYNSYCSNVARTFLIDANTVQSKAYEVLLKAHEAAISALKSGNKVSAAYKAA 359 (1073)
Q Consensus 283 ~~h~~~~---dr~L~~G~~dvI~vdlG~~y~GY~sditRT~~VgPs~eq~~~y~~llea~~a~i~~lkPGvt~~dV~~aa 359 (1073)
+|+.|. ++.|+.| |+|.+|+|+.|+||++|++||+++|+. ++++|+++.+|++++++.+|||++++||++++
T Consensus 63 -~H~~p~~~d~~~l~~G--DvV~iD~G~~~dGY~aD~arT~~vG~~--~~~l~~a~~~A~~aai~~~kPGv~~~dV~~ai 137 (295)
T TIGR00501 63 -AHFTPKAGDKTVFKDG--DVVKLDLGAHVDGYIADTAITVDLGDQ--YDNLVKAAKDALYTAIKEIRAGVRVGEIGKAI 137 (295)
T ss_pred -eCCCCCCCcCccCCCC--CEEEEEEeEEECCEEEEEEEEEEeCcH--HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 566664 5789999 999999999999999999999999953 78999999999999999999999999999999
Q ss_pred HHHHHhcCCccccccCCccccccc-cccccCCC--cccCCCCceecCCcEEEEeeccc
Q 001468 360 STVVEKDAPELAANLTRNAGTGIG-LEFRESGL--SLNAKNDRILKAGMVFNVSLGFQ 414 (1073)
Q Consensus 360 ~~~l~~~Gp~l~~~~~h~~GHgIG-le~~E~p~--~l~~~~~~~L~~GMVf~IEpG~~ 414 (1073)
.+++++.| +.. +.|.+||||| +.+|+.+. .+.+++..+|++||||+|||++.
T Consensus 138 ~~vi~~~G--~~~-i~~~~GHgig~~~~h~g~~ip~i~~~~~~~le~GmV~aIEP~~~ 192 (295)
T TIGR00501 138 QEVIESYG--VKP-ISNLTGHSMAPYRLHGGKSIPNVKERDTTKLEEGDVVAIEPFAT 192 (295)
T ss_pred HHHHHHcC--Cee-ecCCCCcceecccccCCCccCeecCCCCCEeCCCCEEEEceeEE
Confidence 99999999 765 5789999999 57787631 35667789999999999999754
No 39
>cd01088 MetAP2 Methionine Aminopeptidase 2. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.
Probab=99.93 E-value=4.2e-25 Score=247.35 Aligned_cols=182 Identities=17% Similarity=0.177 Sum_probs=156.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCHHHHHHHHHHHHHccchhhhhcccCCCCCCCCCeEEeCCCCCCCCC
Q 001468 206 LTNIKKAAFLSSSVMKQFVVPKLEKVIDEEKKVSHSSLMDETEKAILEPARIKVKLKAENVDICYPPIFQSGGEFDLKPS 285 (1073)
Q Consensus 206 I~~iR~Aa~ia~~a~~~~~~~~i~~iid~e~GvtE~eLa~~ie~~l~~~gk~~~~~g~~~~~~~y~piV~SG~n~~l~~h 285 (1073)
++.||+|++++..++. ++.+.++ +|+|+.+|++.+++.+.+. |. +++|++++. .|... +|
T Consensus 1 ~~~~r~Aa~I~~~a~~-~~~~~i~------pG~te~ei~~~~~~~i~~~-------G~---~~afp~~is--~n~~~-~H 60 (291)
T cd01088 1 LEKYREAGEIHRQVRK-YAQSLIK------PGMTLLEIAEFVENRIREL-------GA---GPAFPVNLS--INECA-AH 60 (291)
T ss_pred CHHHHHHHHHHHHHHH-HHHHHcc------CCCcHHHHHHHHHHHHHHc-------CC---CCCCCceec--cCCEe-eC
Confidence 3689999999999999 8998888 6999999999999998753 33 467876543 34333 67
Q ss_pred CcCC---CcccccCCcceEEEeeceeeCCeEeeeEEEEEecCChHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 001468 286 ASSN---DNYLYYDSTSVIICAVGSRYNSYCSNVARTFLIDANTVQSKAYEVLLKAHEAAISALKSGNKVSAAYKAASTV 362 (1073)
Q Consensus 286 ~~~~---dr~L~~G~~dvI~vdlG~~y~GY~sditRT~~VgPs~eq~~~y~~llea~~a~i~~lkPGvt~~dV~~aa~~~ 362 (1073)
+.|+ ++.|++| |+|.+|+|+.|+||++|++||+++|+ .++++|+++++|++++++++|||++++||++++.++
T Consensus 61 ~~p~~~d~~~l~~G--DvV~iD~G~~~dGY~sD~arT~~vg~--~~~~l~ea~~~A~~~ai~~ikPG~~~~dV~~ai~~~ 136 (291)
T cd01088 61 YTPNAGDDTVLKEG--DVVKLDFGAHVDGYIADSAFTVDFDP--KYDDLLEAAKEALNAAIKEAGPDVRLGEIGEAIEEV 136 (291)
T ss_pred CCCCCCCCcccCCC--CEEEEEEEEEECCEEEEEEEEEecCh--hHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 7775 3789999 99999999999999999999999985 788999999999999999999999999999999999
Q ss_pred HHhcCCccccccCCccccccc-cccccCCC--cccCCCCceecCCcEEEEeeccc
Q 001468 363 VEKDAPELAANLTRNAGTGIG-LEFRESGL--SLNAKNDRILKAGMVFNVSLGFQ 414 (1073)
Q Consensus 363 l~~~Gp~l~~~~~h~~GHgIG-le~~E~p~--~l~~~~~~~L~~GMVf~IEpG~~ 414 (1073)
+++.| +.. +.+.+||||| +.+|+.|. .+..+++.+|++||||+|||++.
T Consensus 137 i~~~G--~~~-~~~~~GHgig~~~~h~~~~ip~~~~~~~~~le~gmV~aIEp~~s 188 (291)
T cd01088 137 IESYG--FKP-IRNLTGHSIERYRLHAGKSIPNVKGGEGTRLEEGDVYAIEPFAT 188 (291)
T ss_pred HHHcC--CEE-eecCCccCccCccccCCCccCccCCCCCCEeCCCCEEEEceeEE
Confidence 99999 765 5788999999 57888753 24566789999999999999765
No 40
>PF14826 FACT-Spt16_Nlob: FACT complex subunit SPT16 N-terminal lobe domain; PDB: 3BIQ_A 3BIT_A 3BIP_A 3CB6_A 3CB5_A.
Probab=99.91 E-value=3.7e-25 Score=226.43 Aligned_cols=159 Identities=45% Similarity=0.803 Sum_probs=125.1
Q ss_pred CCHHHHHHHHHHHHHHHhccCCCCCCCccEEEEeCCCCCCcccccccccceEeecCCcCCcEEEEEeCCcEEEEEeCCcc
Q 001468 27 INLDNFSKRLKMLYSHWTEHNSDLWGDSNALAVATPPVSEDLRYLKSSALNVWLVGYEFPETIMVFLKKQIHFLCSQKKA 106 (1073)
Q Consensus 27 i~~~~f~~Rl~rL~~~m~~~~~~~~~glDaLli~~g~~~~~~~Y~ks~al~~wLtGye~p~tlll~t~~~~~ll~s~kK~ 106 (1073)
||.+.|.+||++|++.|++++...|+++|||+|..|.++++++|.|++++|.||+||++|+|+||||++.++++|+++|+
T Consensus 1 iD~~~F~~RL~~L~~~W~~~~~~~~~~~dal~i~~G~~~e~~~Y~Ks~aLq~WLlGYEfpdTiiv~tk~~i~~ltS~KKa 80 (163)
T PF14826_consen 1 IDKETFHKRLKRLYSSWKEHKDDLWGGADALVIAVGKADEDNPYSKSTALQTWLLGYEFPDTIIVFTKKKIHFLTSKKKA 80 (163)
T ss_dssp --HHHHHHHHHHHHHHHHCCCHHTSTT-SEEEEEE-S--TTSTT-HHHHHHHHHHSS--SSEEEEEETTEEEEEEEHHHH
T ss_pred CCHHHHHHHHHHHHHHHhccCccccCCCCEEEEEeCCcccCccchhHHHHHHHHhcccHhhhhhhhcCCEEEEEeCHHHH
Confidence 68899999999999999997655899999999999987789999999999999999999999999999999999999999
Q ss_pred chHHHHHhhc--ccccceEEEEEeC-CCCCCCCChHHHHHHHhhhcccCCCCCCCEEEEeCCCCCcHHHHHHHHHHHhhc
Q 001468 107 SLLEVIKKSA--KEAVGIEVVIHVK-GKTDDGSGLMDKIFGAVNDQSKSGGQNSPVVGHISREAPEGKLLETWNEKLKKA 183 (1073)
Q Consensus 107 ~~le~~~~~~--~~~~~vei~~~~k-d~~d~~~~~~~~l~~~Lk~~~~~~~~~~~rIGv~~kd~~~g~~~~~l~~~l~~~ 183 (1073)
++|+++.... ...++++++++.+ +++.+. .+|+++++.|+ ..+++||+..++.+.|+|++.|.+++...
T Consensus 81 ~~L~~l~~~~~~~~~~~v~ll~R~k~d~~~~~-~~f~kl~~~ik-------~~g~~vG~~~Kd~~~G~f~~~w~~~l~~~ 152 (163)
T PF14826_consen 81 KFLEPLKKPAKEGGSIPVELLVRNKKDPEKNK-ANFEKLIEAIK-------KAGKKVGVLAKDKFEGKFVDEWKEALKKS 152 (163)
T ss_dssp HCCCCHCCCTTTT-SSEEEEEEE-TT-HHHHH-HHHHHHHHHHH-------CCTSEEEE-TT----SHHHHHHHHHHCHH
T ss_pred HHHHHHhhccccCCCceEEEEEeCCCCccchH-HHHHHHHHHHH-------hcCCeEeEecCCCCCCchHHHHHHHHhhc
Confidence 9999988531 2356788888873 322344 89999999999 37899999999999999999999999877
Q ss_pred CceEEeCCcc
Q 001468 184 NFALSDVSNG 193 (1073)
Q Consensus 184 ~~e~vDvs~~ 193 (1073)
+++.|||+..
T Consensus 153 ~~~~vDvs~~ 162 (163)
T PF14826_consen 153 GFEKVDVSSG 162 (163)
T ss_dssp CSEEEE-HHH
T ss_pred CCceeeccCC
Confidence 9999999864
No 41
>PF08512 Rtt106: Histone chaperone Rttp106-like; InterPro: IPR013719 This is a domain of unknown function that is associated with a number of different protein families. It is found in Rtt106p, which is a histone chaperone involved in heterochromatin-mediated silencing []. It is also found in genes annotated as transcription factors/regulators. This domain is the C-terminal domain of yeast Spt16p P32558 from SWISSPROT, which is a subunit of the heterodimeric yeast FACT complex (Spt16p-Pob3p, IPR000969 from INTERPRO) []. In addition Spt16p and its relatives, in this entry, are described as non-peptidase homologues belonging to the MEROPS peptidase family M24. The FACT complex facilitates RNA Polymerase II transcription elongation through nucleosomes by destabilising and then reassembling nucleosome structure [, ]. ; PDB: 3TW1_A 3GYO_A 3TO1_A 3FSS_A 3TVV_B 3GYP_A 2GCJ_D 2GCL_A.
Probab=99.87 E-value=9.3e-23 Score=190.89 Aligned_cols=90 Identities=32% Similarity=0.599 Sum_probs=79.5
Q ss_pred eeeccc---CceeeeeeCcccceeeccCCcEEEEcCceeEEEEEee-cCCCcceeEEEEEecCCCCeEEEecccCCChhh
Q 001468 837 FHGVPH---KASAFIVPTSSCLVELIETPFVVITLSEIEIVNLERV-GLGQKNFDMTIVFKDFKRDVLRIDSIPSSSLDG 912 (1073)
Q Consensus 837 f~g~~~---~~~~~l~pt~~clv~l~e~P~~vi~l~eie~v~feRv-~~~~k~FD~~~v~kd~~~~~~~i~~I~~~~l~~ 912 (1073)
|+||+. +++++|+|+.+||+++.++|+++|+++||+.|+|||| +.++|||||+|++|||++++++|++||+++++.
T Consensus 1 f~~V~c~~ka~~g~L~pl~~~l~f~~~kP~~~i~~~dI~~v~feRv~~~~~ktFDl~v~~k~~~~~~~~fs~I~~~e~~~ 80 (95)
T PF08512_consen 1 FYGVKCSYKANEGFLYPLEKCLLFGLEKPPFVIPLDDIESVEFERVSSFSSKTFDLVVILKDYEGPPHEFSSIDREEYDN 80 (95)
T ss_dssp -EEEEEEETTEEEEEEEESSEEEEECSSS-EEEEGGGEEEEEEE--ESSSSSEEEEEEEETT-TS-EEEEEEEEGGGHHH
T ss_pred CCceeEeccccCEEEEEccceEEEecCCCeEEEEhhHeeEEEEEecccCcceEEEEEEEEecCCCCcEEEeeECHHHHHH
Confidence 455555 4999999999999999999999999999999999999 889999999999999999999999999999999
Q ss_pred HHHHhhcCCceeee
Q 001468 913 IKEWLDTTDLKYYE 926 (1073)
Q Consensus 913 ik~wl~~~~i~~~e 926 (1073)
|++||++++|+|++
T Consensus 81 l~~~l~~~~i~~~~ 94 (95)
T PF08512_consen 81 LKDFLKSKNIKIKN 94 (95)
T ss_dssp HHHHHHHCCHHCCC
T ss_pred HHHHHHHCCCEeec
Confidence 99999999999875
No 42
>PF03531 SSrecog: Structure-specific recognition protein (SSRP1); InterPro: IPR000969 Human structure-specific recognition protein, SSRP1, [] binds specifically to DNA modified with the anti-cancer drug cisplatin. An 81kDa protein is predicted, containing several highly-charged domains and a stretch of 75 residues that share 47% identity with a portion of the high mobility group (HMG) protein HMG1. This HMG box probably constitutes the structure recognition element for cisplatin-modified DNA, the probable recognition motif being the local duplex unwinding and bending that occurs on formation of intra-strand cross-links []. SSRP1 is the human homologue of a recently identified mouse protein that binds to recombination signal sequences []. These sequences have been postulated to form stem-loop structures, further implicating local bends and unwinding in DNA as a recognition target for HMG-box proteins. A Drosophila melanogaster cDNA encoding an HMG-box-containing protein has also been isolated [, ]. This protein shares 50% sequence identity with human SSRP1. In vitro binding studies using Drosophila SSRP showed that the protein binds to single-stranded DNA and RNA, with highest affinity for nucleotides G and U. Comparison of the predicted amino acid sequences among SSRP family members reveals 48% identity, with structural conservation in the C terminus of the HMG box, as well as domains of highly charged residues. The most highly conserved regions lie in the poorly understood N terminus, suggesting that this portion of the protein is critical for its function []. This entry contains Pob3 Q04636 from SWISSPROT, which is a subunit of the heterodimeric yeast FACT complex (Spt16p (IPR013953 from INTERPRO)-Pob3p) []. The FACT complex facilitates RNA Polymerase II transcription elongation through nucleosomes by destabilising and then reassembling nucleosome structure [, ].; GO: 0003677 DNA binding, 0005634 nucleus; PDB: 3F5R_A 2GCL_B 2GCJ_D.
Probab=99.21 E-value=1.6e-11 Score=130.87 Aligned_cols=66 Identities=17% Similarity=0.210 Sum_probs=59.4
Q ss_pred ceEEEEecceeeecCCCCceeeeeccccceeeeccCCCccEEEEEEEcccceeeCceeccee--eEEEEe
Q 001468 701 GSLEAHTNGFRYSTSRPDERVDVMYGNIKHAFFQPAEREMITLLHFHLHNHIMVGNKKTKDV--QFYIEV 768 (1073)
Q Consensus 701 G~le~h~ng~r~~~~~~~~~~dily~nIk~~ffqp~~~e~~v~~h~~L~~pi~~Gkkk~~dv--QF~~e~ 768 (1073)
=.+++|.+.||+.+ +++++.|+|+||+++|++|++++.|+.++++|++||+||||+||.| ||-+|.
T Consensus 151 ydi~~y~~~lrl~G--ktyDykI~y~~I~rlflLpk~d~~~~~~Vi~LdpPiRQGQT~Y~~lV~qf~~de 218 (222)
T PF03531_consen 151 YDIEMYPTFLRLHG--KTYDYKIQYSSISRLFLLPKPDDRHVFFVISLDPPIRQGQTRYPFLVMQFSKDE 218 (222)
T ss_dssp EEEEE-SSEEEEEE--SSBEEEEEGGGEEEEEEEE-TTSSEEEEEEEEEEEEEETTEEEEEEEEEEETT-
T ss_pred cccccccccccccc--cccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 37999999999998 8999999999999999999999999999999999999999999966 998544
No 43
>PF01321 Creatinase_N: Creatinase/Prolidase N-terminal domain; InterPro: IPR000587 Creatinase or creatine amidinohydrolase (3.5.3.3 from EC) catalyses the conversion of creatine and water to sarcosine and urea. The enzyme works as a homodimer, and is induced by choline chloride. Each monomer of creatinase has two clearly defined domains, a small N-terminal domain, and a large C-terminal domain. The structure of the C-terminal region represents the "pita-bread" fold. The fold contains both alpha helices and an anti-parallel beta sheet within two structurally similar domains that are thought to be derived from an ancient gene duplication. The active site, where conserved, is located between the two domains. The fold is common to methionine aminopeptidase (3.4.11.18 from EC), aminopeptidase P (3.4.11.9 from EC), prolidase (3.4.13.9 from EC), agropine synthase and creatinase (3.5.3.3 from EC). Though many of these peptidases require a divalent cation, creatinase is not a metal-dependent enzyme [, , ]. ; GO: 0016787 hydrolase activity; PDB: 1PV9_A 3CTZ_A 3IL0_B 3PN9_A 2HOW_A 1WN1_B 3I7M_A 1CHM_B 3QOC_D 1KP0_B ....
Probab=98.92 E-value=4.1e-09 Score=103.44 Aligned_cols=128 Identities=19% Similarity=0.210 Sum_probs=93.2
Q ss_pred HHHHHHHHHhccCCCCCCCccEEEEeCCCCCCcccccccccceEeecCC---cCCcEEEE-EeCCcEEEEEeCCccchHH
Q 001468 35 RLKMLYSHWTEHNSDLWGDSNALAVATPPVSEDLRYLKSSALNVWLVGY---EFPETIMV-FLKKQIHFLCSQKKASLLE 110 (1073)
Q Consensus 35 Rl~rL~~~m~~~~~~~~~glDaLli~~g~~~~~~~Y~ks~al~~wLtGy---e~p~tlll-~t~~~~~ll~s~kK~~~le 110 (1073)
|+++|++.|++ .|+|++|++.+. | ++||||| .....+++ ++.++.+++++.. ++..
T Consensus 1 Rl~rl~~~m~~------~gid~lll~~~~-n-----------i~YltG~~~~~~~~~~~l~i~~~~~~l~~~~~--~~~~ 60 (132)
T PF01321_consen 1 RLERLRAAMAE------AGIDALLLTSPE-N-----------IRYLTGFRWQPGERPVLLVITADGAVLFVPKG--EYER 60 (132)
T ss_dssp HHHHHHHHHHH------TT-SEEEEESHH-H-----------HHHHHS--ST-TSSEEEEEEESSSEEEEEEGG--GHHH
T ss_pred CHHHHHHHHHH------CCCCEEEEcChh-h-----------ceEecCCCcCCCcceEEEEecccCcEEEeccc--cHHH
Confidence 89999999999 899999999987 3 7899999 44445544 7777668888743 3323
Q ss_pred HHHhhcccccceEEEEEeCCCCCCCCChHHHHHHHhhhcccCCCCCCCEEEEeCCCCCcHHHHHHHHHHHhhcCceEEeC
Q 001468 111 VIKKSAKEAVGIEVVIHVKGKTDDGSGLMDKIFGAVNDQSKSGGQNSPVVGHISREAPEGKLLETWNEKLKKANFALSDV 190 (1073)
Q Consensus 111 ~~~~~~~~~~~vei~~~~kd~~d~~~~~~~~l~~~Lk~~~~~~~~~~~rIGv~~kd~~~g~~~~~l~~~l~~~~~e~vDv 190 (1073)
..... .+..+++.+. +..+.+.+.|++. +..+++||++.. .++...+..+.+.++ +.+++|+
T Consensus 61 ~~~~~---~~~~~v~~~~--------~~~~~~~~~l~~~----~~~~~~igve~~-~~~~~~~~~l~~~~~--~~~~v~~ 122 (132)
T PF01321_consen 61 AAEES---APDDEVVEYE--------DPYEAIAEALKKL----GPEGKRIGVEPD-SLSAAEYQRLQEALP--GAEFVDA 122 (132)
T ss_dssp HHHHH---TTSSEEEEES--------THHHHHHHHHHHH----TTTTSEEEEETT-TSBHHHHHHHHHHST--TSEEEEE
T ss_pred HHHhh---cCCceEEEEe--------cccchHHHHHHHh----CCCCCEEEEcCC-cChHHHHHHHHHhCC--CCEEEEc
Confidence 22221 2557787773 1355666666653 234589999975 578999999999997 8899999
Q ss_pred Cccccccccc
Q 001468 191 SNGFSDLFAI 200 (1073)
Q Consensus 191 s~~l~~lR~V 200 (1073)
++.|..+|+|
T Consensus 123 ~~~i~~~R~I 132 (132)
T PF01321_consen 123 SPLIEELRMI 132 (132)
T ss_dssp HHHHHHHHTS
T ss_pred HHHHHHcCcC
Confidence 9999999986
No 44
>KOG2776 consensus Metallopeptidase [General function prediction only]
Probab=98.58 E-value=9e-07 Score=98.46 Aligned_cols=158 Identities=22% Similarity=0.244 Sum_probs=123.5
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCHHHHHHHHHHHHHcc-chhhhh-cccCCCCCCCCCeEEe
Q 001468 199 AIKDDTELTNIKKAAFLSSSVMKQFVVPKLEKVIDEEKKVSHSSLMDETEKAILEP-ARIKVK-LKAENVDICYPPIFQS 276 (1073)
Q Consensus 199 ~VKd~~EI~~iR~Aa~ia~~a~~~~~~~~i~~iid~e~GvtE~eLa~~ie~~l~~~-gk~~~~-~g~~~~~~~y~piV~S 276 (1073)
.|-++.-+..+|-|+.|+..+++ .+...+. +|.+-.+|+..-...+.+. +++..+ -... .+++||+.|.-
T Consensus 14 tia~~~vvtKYk~AgeI~n~~lk-~V~~~~~------~gasv~eiC~~GD~~i~E~t~kiYK~eK~~~-KGIAfPT~Isv 85 (398)
T KOG2776|consen 14 TIANDSVVTKYKMAGEIVNKVLK-SVVELCQ------PGASVREICEKGDSLILEETGKIYKKEKDFE-KGIAFPTSISV 85 (398)
T ss_pred ccccHHHHhhhhhHHHHHHHHHH-HHHHHhc------CCchHHHHHHhhhHHHHHHHHHHHhhhhhhh-ccccccceecc
Confidence 34566677899999999999999 8999998 5999999998887776542 232221 1111 25788876644
Q ss_pred CCCCCCCCCCcCC--CcccccCCcceEEEeeceeeCCeEeeeEEEEEecC------ChHHHHHHHHHHHHHHHHHHHcCC
Q 001468 277 GGEFDLKPSASSN--DNYLYYDSTSVIICAVGSRYNSYCSNVARTFLIDA------NTVQSKAYEVLLKAHEAAISALKS 348 (1073)
Q Consensus 277 G~n~~l~~h~~~~--dr~L~~G~~dvI~vdlG~~y~GY~sditRT~~VgP------s~eq~~~y~~llea~~a~i~~lkP 348 (1073)
. |+.-.++...+ +..|+.| |+|.+|+|+.++||.|.++.|++|+| +....++..++..|.++++..|+|
T Consensus 86 n-ncv~h~sPlksd~~~~Lk~G--DvVKIdLG~HiDGfiA~vaHT~VV~~~~~~~vtG~kADvI~AAh~A~eaa~rllkp 162 (398)
T KOG2776|consen 86 N-NCVCHFSPLKSDADYTLKEG--DVVKIDLGVHIDGFIALVAHTIVVGPAPDTPVTGRKADVIAAAHLAAEAALRLLKP 162 (398)
T ss_pred c-ceeeccCcCCCCCcccccCC--CEEEEEeeeeeccceeeeeeeEEeccCCCCcccCchhHHHHHHHHHHHHHHHHhCC
Confidence 3 22211222222 5689999 99999999999999999999999984 347888999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhcC
Q 001468 349 GNKVSAAYKAASTVVEKDA 367 (1073)
Q Consensus 349 Gvt~~dV~~aa~~~l~~~G 367 (1073)
|.+-..|-+++.+.+.+.+
T Consensus 163 gn~n~~vT~~i~k~aas~~ 181 (398)
T KOG2776|consen 163 GNTNTQVTRAIVKTAASYG 181 (398)
T ss_pred CCCCchhhHHHHHHHHHhC
Confidence 9999999999999999887
No 45
>KOG2775 consensus Metallopeptidase [General function prediction only]
Probab=98.55 E-value=1.8e-06 Score=93.64 Aligned_cols=190 Identities=14% Similarity=0.176 Sum_probs=139.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCHHHHHHHHHHHHHccchhhhhcccCCCCCCCCCeEEeCCCCCCC
Q 001468 204 TELTNIKKAAFLSSSVMKQFVVPKLEKVIDEEKKVSHSSLMDETEKAILEPARIKVKLKAENVDICYPPIFQSGGEFDLK 283 (1073)
Q Consensus 204 ~EI~~iR~Aa~ia~~a~~~~~~~~i~~iid~e~GvtE~eLa~~ie~~l~~~gk~~~~~g~~~~~~~y~piV~SG~n~~l~ 283 (1073)
+...-+|+||.+..++-+ ++...|+ ||||-.+|+..++...+. +...-|. ..+++||+ -+|=.+++
T Consensus 83 ~i~~d~rraAE~HRqvR~-yv~s~ik------PGmtm~ei~e~iEnttR~---li~e~gl-~aGi~FPt-G~SlN~cA-- 148 (397)
T KOG2775|consen 83 DIYQDLRRAAEAHRQVRK-YVQSIIK------PGMTMIEICETIENTTRK---LILENGL-NAGIGFPT-GCSLNHCA-- 148 (397)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHhcc------CcccHHHHHHHHHHHHHH---HHHhccc-cccccCCC-cccccchh--
Confidence 445667888888777776 6777766 799999999999877652 1111122 12566754 23333333
Q ss_pred CCCcCCC---cccccCCcceEEEeeceeeCCeEeeeEEEEEecCChHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 001468 284 PSASSND---NYLYYDSTSVIICAVGSRYNSYCSNVARTFLIDANTVQSKAYEVLLKAHEAAISALKSGNKVSAAYKAAS 360 (1073)
Q Consensus 284 ~h~~~~d---r~L~~G~~dvI~vdlG~~y~GY~sditRT~~VgPs~eq~~~y~~llea~~a~i~~lkPGvt~~dV~~aa~ 360 (1073)
.|+.|+. -.|+.+ |++.+|+|...+|--.|.+-|+.++|. ...+..++.+|-..+|+.+--.|+++||-+++.
T Consensus 149 AHyTpNaGd~tVLqyd--DV~KiDfGthi~GrIiDsAFTv~F~p~--~d~Ll~AvreaT~tGIkeaGiDvRlcdiG~aiq 224 (397)
T KOG2775|consen 149 AHYTPNAGDKTVLKYD--DVMKIDFGTHIDGRIIDSAFTVAFNPK--YDPLLAAVREATNTGIKEAGIDVRLCDIGEAIQ 224 (397)
T ss_pred hhcCCCCCCceeeeec--ceEEEeccccccCeEeeeeeEEeeCcc--ccHHHHHHHHHHhhhhhhcCceeeehhhhHHHH
Confidence 4666652 478999 999999999999999999999999863 445778888999999999999999999999999
Q ss_pred HHHHhcCCcccc------ccCCcccccccc-cccc---CCCcccCCCCceecCCcEEEEeec
Q 001468 361 TVVEKDAPELAA------NLTRNAGTGIGL-EFRE---SGLSLNAKNDRILKAGMVFNVSLG 412 (1073)
Q Consensus 361 ~~l~~~Gp~l~~------~~~h~~GHgIGl-e~~E---~p~~l~~~~~~~L~~GMVf~IEpG 412 (1073)
+++.++-.++.. ....-.||+||- .+|- -| ++..+..+.+++|.+++||..
T Consensus 225 EVmeSyEvEi~Gk~~~VKpIrnLnGHSI~~yrIH~gksVP-iVkgge~trmee~e~yAIETF 285 (397)
T KOG2775|consen 225 EVMESYEVEINGKTYQVKPIRNLNGHSIAQYRIHGGKSVP-IVKGGEQTRMEEGEIYAIETF 285 (397)
T ss_pred HHhhheEEEeCCceecceeccccCCCcccceEeecCcccc-eecCCcceeecCCeeEEEEee
Confidence 999998533221 123347999984 3343 24 456778899999999999973
No 46
>PF05195 AMP_N: Aminopeptidase P, N-terminal domain; InterPro: IPR007865 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This N-terminal domain is associated with N-terminal region of aminopeptidase P (X-Pro aminopeptidase I and II, 3.4.11.9 from EC) and related sequences. It is not found associated with methionyl aminopeptidase 1 (IPR002467 from INTERPRO) or methionyl aminopeptidase 2 (IPR002468 from INTERPRO) families. The domain is structurally very similar [] to the creatinase N-terminal domain (IPR000587 from INTERPRO), however, little or no sequence similarity exists between the two domains. The sequences belong to MEROPS peptidase family M24B, clan MG.; GO: 0004177 aminopeptidase activity, 0030145 manganese ion binding; PDB: 3IG4_B 2OKN_A 2IW2_B 1WBQ_A 2BH3_A 1WLR_A 2V3Z_A 1W2M_B 2BWT_A 2BWW_A ....
Probab=97.25 E-value=0.00019 Score=71.87 Aligned_cols=70 Identities=19% Similarity=0.394 Sum_probs=43.0
Q ss_pred CCHHHHHHHHHHHHHHHhccCCCCCCCccEEEEeCCC---CCCccccc-ccccceEeecCCcCCcEEEEE-eC--CcEEE
Q 001468 27 INLDNFSKRLKMLYSHWTEHNSDLWGDSNALAVATPP---VSEDLRYL-KSSALNVWLVGYEFPETIMVF-LK--KQIHF 99 (1073)
Q Consensus 27 i~~~~f~~Rl~rL~~~m~~~~~~~~~glDaLli~~g~---~~~~~~Y~-ks~al~~wLtGye~p~tlll~-t~--~~~~l 99 (1073)
|+.++|.+|+++|.+.|... .++||.++. ++.++.|+ +|.+.++||||+..|++++|+ .. ++.+|
T Consensus 1 i~~~~~~~RR~~l~~~l~~~--------~~vil~~~~~~~~~~D~~y~FrQ~s~F~YLTG~~ep~~~lvl~~~~~~~~~L 72 (134)
T PF05195_consen 1 IPAEEYAERRKKLAEKLPDN--------SIVILPGGPEKYRSNDIEYPFRQDSNFYYLTGFNEPDAVLVLKDGESGKSTL 72 (134)
T ss_dssp -EHHHHHHHHHHHHHHSHSS--------EEEEEE----EEEETTEEE-----HHHHHHH---STT-EEEEEECTTEEEEE
T ss_pred CCHHHHHHHHHHHHHhcCCC--------cEEEEECCCeeeecCCCccccccCCcEEEEeCCCCCCEEEEEecCCCCeEEE
Confidence 57899999999999999861 134444444 23466787 999999999999999999988 33 47889
Q ss_pred EEeCC
Q 001468 100 LCSQK 104 (1073)
Q Consensus 100 l~s~k 104 (1073)
|+.+.
T Consensus 73 F~~~~ 77 (134)
T PF05195_consen 73 FVPPK 77 (134)
T ss_dssp EE---
T ss_pred EeCCC
Confidence 99765
No 47
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.79 E-value=0.00093 Score=81.50 Aligned_cols=30 Identities=20% Similarity=0.382 Sum_probs=21.1
Q ss_pred CCCCCCCCCCCceEEEeccCCEEEEeeCccccceeee
Q 001468 545 KNVNDLPPPRDLMIQVDQKNEAILLPIYGSMVPFHVA 581 (1073)
Q Consensus 545 ~~~~~~P~~~~~~i~vD~~~~~vilPi~G~~vPfHi~ 581 (1073)
+.+..+|.-. ..++++.-||+..+.||.-.
T Consensus 879 ~~ea~LP~~~-------As~~s~fTP~~~~~~p~S~~ 908 (1516)
T KOG1832|consen 879 QQEAPLPKIN-------ASKQSTFTPSFSSKQPFSHD 908 (1516)
T ss_pred hccCCCCCcc-------cccccccCccccCCCCCCCC
Confidence 4455566532 22689999999999999654
No 48
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=96.65 E-value=0.0016 Score=83.21 Aligned_cols=6 Identities=0% Similarity=0.368 Sum_probs=2.2
Q ss_pred HHHHhh
Q 001468 142 IFGAVN 147 (1073)
Q Consensus 142 l~~~Lk 147 (1073)
+++.+.
T Consensus 42 vl~ll~ 47 (784)
T PF04931_consen 42 VLDLLK 47 (784)
T ss_pred HHHHHH
Confidence 333333
No 49
>PLN03158 methionine aminopeptidase; Provisional
Probab=96.64 E-value=0.0089 Score=70.36 Aligned_cols=112 Identities=15% Similarity=0.173 Sum_probs=80.5
Q ss_pred CeEeeeEEEEEec-CC--hHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCcccc-----ccCCcccccc
Q 001468 311 SYCSNVARTFLID-AN--TVQSKAYEVLLKAHEAAISALKSGNKVSAAYKAASTVVEKDAPELAA-----NLTRNAGTGI 382 (1073)
Q Consensus 311 GY~sditRT~~Vg-Ps--~eq~~~y~~llea~~a~i~~lkPGvt~~dV~~aa~~~l~~~Gp~l~~-----~~~h~~GHgI 382 (1073)
..++++.|+..|. |. +.++++.+.+.+++++++++++||++-.||.+++...+.+.|. +.. .|++.+ .+
T Consensus 126 ~~~~~~~~~~~IKsp~EIe~mR~A~~ia~~al~~a~~~irpGvTe~EI~~~v~~~~~~~Ga-~ps~l~y~~fp~sv--ct 202 (396)
T PLN03158 126 EPNSDLQHSVEIKTPEQIQRMRETCRIAREVLDAAARAIKPGVTTDEIDRVVHEATIAAGG-YPSPLNYHFFPKSC--CT 202 (396)
T ss_pred ccccccccceeeCCHHHHHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHcCC-ccccccccCCCcee--ee
Confidence 4456777888886 43 5778888899999999999999999999999999999888772 211 122211 12
Q ss_pred ccccccCCCcc-cCCCCceecCCcEEEEeeccccccCCCCCCCCCeeeEEEEEEEEEe
Q 001468 383 GLEFRESGLSL-NAKNDRILKAGMVFNVSLGFQNLQTENKNPKTQKFSVLLADTVIVG 439 (1073)
Q Consensus 383 Gle~~E~p~~l-~~~~~~~L~~GMVf~IEpG~~~l~~~~~~~~~~~~gvriEDTVlVt 439 (1073)
|+. +. +. ...+.++|++|++++|.+|.+ + .+|..-+..|++|+
T Consensus 203 s~N--~~--i~Hgip~~r~L~~GDiV~iDvg~~-~---------~GY~aD~tRT~~VG 246 (396)
T PLN03158 203 SVN--EV--ICHGIPDARKLEDGDIVNVDVTVY-Y---------KGCHGDLNETFFVG 246 (396)
T ss_pred ccc--cc--ccCCCCCCccCCCCCEEEEEEeEE-E---------CCEEEeEEeEEEcC
Confidence 221 10 00 112568999999999999987 3 33777999999995
No 50
>cd01086 MetAP1 Methionine Aminopeptidase 1. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and Peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.
Probab=96.56 E-value=0.017 Score=63.14 Aligned_cols=100 Identities=21% Similarity=0.234 Sum_probs=71.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCccccccCCcccc----ccccccccCCCcccCCCCcee
Q 001468 326 TVQSKAYEVLLKAHEAAISALKSGNKVSAAYKAASTVVEKDAPELAANLTRNAGT----GIGLEFRESGLSLNAKNDRIL 401 (1073)
Q Consensus 326 ~eq~~~y~~llea~~a~i~~lkPGvt~~dV~~aa~~~l~~~Gp~l~~~~~h~~GH----gIGle~~E~p~~l~~~~~~~L 401 (1073)
+.++++.+.+.+++.+++++++||++..||..++.+.+.+.| ....+....++ ..|..- ..| -...++++|
T Consensus 2 ~~lr~A~~i~~~~~~~~~~~~~pG~tE~ev~~~~~~~~~~~G--~~~~~~~~~~~~~~~~~~~~~-~~~--h~~~~~~~l 76 (238)
T cd01086 2 EGMREAGRIVAEVLDELAKAIKPGVTTKELDQIAHEFIEEHG--AYPAPLGYYGFPKSICTSVNE-VVC--HGIPDDRVL 76 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHcC--CCcccccCCCCCcceecCCCC-cee--CCCCCCccc
Confidence 357899999999999999999999999999999999999998 33222111111 112110 001 011247899
Q ss_pred cCCcEEEEeeccccccCCCCCCCCCeeeEEEEEEEEEeC
Q 001468 402 KAGMVFNVSLGFQNLQTENKNPKTQKFSVLLADTVIVGE 440 (1073)
Q Consensus 402 ~~GMVf~IEpG~~~l~~~~~~~~~~~~gvriEDTVlVte 440 (1073)
++|+++.+++|.. + +.|..-++.|+.|++
T Consensus 77 ~~Gd~v~id~g~~-~---------~GY~ad~~RT~~~G~ 105 (238)
T cd01086 77 KDGDIVNIDVGVE-L---------DGYHGDSARTFIVGE 105 (238)
T ss_pred CCCCEEEEEEEEE-E---------CCEEEEEEEEEECCC
Confidence 9999999999975 3 347789999999953
No 51
>KOG2413 consensus Xaa-Pro aminopeptidase [Amino acid transport and metabolism]
Probab=96.41 E-value=0.013 Score=70.19 Aligned_cols=131 Identities=10% Similarity=0.097 Sum_probs=95.3
Q ss_pred HHHHHHHHHhccCCCCCCCccEEEEeCCCCCCccccc-ccccceEeecCCcCCcEEEEEeCCcEEEEEeCCccchHHHHH
Q 001468 35 RLKMLYSHWTEHNSDLWGDSNALAVATPPVSEDLRYL-KSSALNVWLVGYEFPETIMVFLKKQIHFLCSQKKASLLEVIK 113 (1073)
Q Consensus 35 Rl~rL~~~m~~~~~~~~~glDaLli~~g~~~~~~~Y~-ks~al~~wLtGye~p~tlll~t~~~~~ll~s~kK~~~le~~~ 113 (1073)
|+.++++.|+. .+++|.|+.+.+ ...+.|. -.+.-..||+||..+.++.++|..+..|+++. +|+.++.
T Consensus 11 ~~~~~~~~~~~------~~i~aYi~Ps~D-aH~sEy~~~~D~R~~flsGFsGsag~Avit~~~a~lwtD~---RY~~QA~ 80 (606)
T KOG2413|consen 11 ELMRLRELMKS------PPIDAYILPSTD-AHQSEYIADRDERRAFLSGFSGSAGTAVITEEEAALWTDG---RYFQQAE 80 (606)
T ss_pred HHHHHHHHhcC------CCceEEEccCCc-hhhhhhhcchhhhhhhhcccCCCcceEEEecCcceEEEcc---HHHHHHH
Confidence 78889999999 799999998887 4467786 45666789999999999999999999999987 5888877
Q ss_pred hhcccccceEEEEEeCCCCCCCCChHHHHHHHhhhcccCCCCCCCEEEEeCCCCCcHHHHHHHHHHHhhcCceEEeC
Q 001468 114 KSAKEAVGIEVVIHVKGKTDDGSGLMDKIFGAVNDQSKSGGQNSPVVGHISREAPEGKLLETWNEKLKKANFALSDV 190 (1073)
Q Consensus 114 ~~~~~~~~vei~~~~kd~~d~~~~~~~~l~~~Lk~~~~~~~~~~~rIGv~~kd~~~g~~~~~l~~~l~~~~~e~vDv 190 (1073)
.+. ..+.... +...+.. ..-+.+++.+. .+.+||+++. -.+...+..|.+.|.+++.+.|.+
T Consensus 81 ~ql----d~~W~l~-k~~~~~~-~v~~wl~~~l~--------~~~~vG~Dp~-Lis~~~~~~~~~~l~s~~~~Lv~i 142 (606)
T KOG2413|consen 81 QQL----DSNWTLM-KMGEDVP-TVEEWLAKVLP--------EGSRVGIDPT-LISFDAWKQLEKSLTSKGLELVPI 142 (606)
T ss_pred hhh----cccceee-eccCCCc-cHHHHHHHhCC--------CccccccCcc-eechhHHHhHHHHHhhCCCeEeec
Confidence 652 1121111 1112212 44455666665 5789999987 556777788888887667776654
No 52
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=96.39 E-value=0.0021 Score=82.18 Aligned_cols=7 Identities=14% Similarity=0.064 Sum_probs=2.5
Q ss_pred hhhHHHH
Q 001468 910 LDGIKEW 916 (1073)
Q Consensus 910 l~~ik~w 916 (1073)
|+.|-+.
T Consensus 625 l~~ll~v 631 (784)
T PF04931_consen 625 LQLLLDV 631 (784)
T ss_pred HHHHHHH
Confidence 3333333
No 53
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.27 E-value=0.0029 Score=77.44 Aligned_cols=41 Identities=22% Similarity=0.346 Sum_probs=25.1
Q ss_pred CceeEEEEEeecC----CCcceeEEEEEecCCCCeEEEecccCCChhhHHHHhhc
Q 001468 869 SEIEIVNLERVGL----GQKNFDMTIVFKDFKRDVLRIDSIPSSSLDGIKEWLDT 919 (1073)
Q Consensus 869 ~eie~v~feRv~~----~~k~FD~~~v~kd~~~~~~~i~~I~~~~l~~ik~wl~~ 919 (1073)
+++.-||-+||-. +-||||-. ||+ -|.+||.. -.|-+++.+
T Consensus 1324 d~~sdvh~~r~k~p~fSSFRTf~a~----dYs----~iaTi~v~--R~~~Dlct~ 1368 (1516)
T KOG1832|consen 1324 DVMSDVHTRRVKHPLFSSFRTFDAI----DYS----DIATIPVD--RCLLDLCTE 1368 (1516)
T ss_pred hhhhhhcccccccchhhhhcccccc----ccc----cceeeecc--cchhhhhcC
Confidence 4566789999854 77888843 443 35566654 244555544
No 54
>PRK05716 methionine aminopeptidase; Validated
Probab=96.10 E-value=0.036 Score=61.06 Aligned_cols=98 Identities=14% Similarity=0.119 Sum_probs=70.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCccccccCCccccc----cccccccCCCcc-cCCCCce
Q 001468 326 TVQSKAYEVLLKAHEAAISALKSGNKVSAAYKAASTVVEKDAPELAANLTRNAGTG----IGLEFRESGLSL-NAKNDRI 400 (1073)
Q Consensus 326 ~eq~~~y~~llea~~a~i~~lkPGvt~~dV~~aa~~~l~~~Gp~l~~~~~h~~GHg----IGle~~E~p~~l-~~~~~~~ 400 (1073)
..++++.+.+..++.++++.++||++..+|..++...+.+.| ....+....++. .|.. . . .+ ...++++
T Consensus 12 ~~~r~A~~i~~~~~~~a~~~i~pG~se~ela~~~~~~~~~~G--~~~~~~~~~~~~~~~~~g~~--~-~-~~h~~~~~~~ 85 (252)
T PRK05716 12 EKMRVAGRLAAEVLDEIEPHVKPGVTTKELDRIAEEYIRDQG--AIPAPLGYHGFPKSICTSVN--E-V-VCHGIPSDKV 85 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHCC--CEecccCCCCCCcCeEeccc--c-e-eecCCCCCcc
Confidence 457788999999999999999999999999999999999988 333222111221 1211 0 0 11 1135689
Q ss_pred ecCCcEEEEeeccccccCCCCCCCCCeeeEEEEEEEEEe
Q 001468 401 LKAGMVFNVSLGFQNLQTENKNPKTQKFSVLLADTVIVG 439 (1073)
Q Consensus 401 L~~GMVf~IEpG~~~l~~~~~~~~~~~~gvriEDTVlVt 439 (1073)
|++||+|.+++|.. + ..|..-+.-|+.|.
T Consensus 86 l~~Gd~v~id~g~~-~---------~gY~~d~~RT~~vG 114 (252)
T PRK05716 86 LKEGDIVNIDVTVI-K---------DGYHGDTSRTFGVG 114 (252)
T ss_pred cCCCCEEEEEEEEE-E---------CCEEEEeEEEEECC
Confidence 99999999999986 3 44888899999883
No 55
>KOG3064 consensus RNA-binding nuclear protein (MAK16) containing a distinct C4 Zn-finger [RNA processing and modification]
Probab=95.86 E-value=0.0058 Score=65.73 Aligned_cols=44 Identities=14% Similarity=0.187 Sum_probs=31.9
Q ss_pred cccceeecccCceeeeeeCcccceeeccCCcEEEEcCceeEEEEE
Q 001468 833 RELGFHGVPHKASAFIVPTSSCLVELIETPFVVITLSEIEIVNLE 877 (1073)
Q Consensus 833 ~~l~f~g~~~~~~~~l~pt~~clv~l~e~P~~vi~l~eie~v~fe 877 (1073)
.+....|+.+|+||.|--..-.-|.-. .-.+++-+-.||-+||=
T Consensus 30 NeyNvTGLCnR~SCPLANSrYATVre~-~g~~yLymKt~ERaH~P 73 (303)
T KOG3064|consen 30 NEYNVTGLCNRSSCPLANSRYATVREE-NGVLYLYMKTIERAHMP 73 (303)
T ss_pred cccccceeeccccCcCccccceeEeec-CCEEEEEEechhhhcCc
Confidence 355788999999998866555555554 56777888888888873
No 56
>PRK12896 methionine aminopeptidase; Reviewed
Probab=95.53 E-value=0.068 Score=59.05 Aligned_cols=109 Identities=17% Similarity=0.167 Sum_probs=75.5
Q ss_pred eEEEEEec-CC--hHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCccccccCCcccc----cccccccc
Q 001468 316 VARTFLID-AN--TVQSKAYEVLLKAHEAAISALKSGNKVSAAYKAASTVVEKDAPELAANLTRNAGT----GIGLEFRE 388 (1073)
Q Consensus 316 itRT~~Vg-Ps--~eq~~~y~~llea~~a~i~~lkPGvt~~dV~~aa~~~l~~~Gp~l~~~~~h~~GH----gIGle~~E 388 (1073)
-+|++.|. |. +..+++.+.+..++.++++.++||++-.||...+...+.+.| ....+....++ +.|.. ..
T Consensus 4 ~~~~~~vKs~~Ei~~~r~a~~i~~~~~~~~~~~i~pG~te~el~~~~~~~~~~~G--~~~~~~~~~~~~~~~~~~~n-~~ 80 (255)
T PRK12896 4 EGRGMEIKSPRELEKMRKIGRIVATALKEMGKAVEPGMTTKELDRIAEKRLEEHG--AIPSPEGYYGFPGSTCISVN-EE 80 (255)
T ss_pred cCCceeECCHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHCC--CEeCcccCCCCCcceEecCC-Ce
Confidence 36888886 43 367788888899999999999999999999999999999988 33222111111 12221 00
Q ss_pred CCCcccCCCCceecCCcEEEEeeccccccCCCCCCCCCeeeEEEEEEEEEe
Q 001468 389 SGLSLNAKNDRILKAGMVFNVSLGFQNLQTENKNPKTQKFSVLLADTVIVG 439 (1073)
Q Consensus 389 ~p~~l~~~~~~~L~~GMVf~IEpG~~~l~~~~~~~~~~~~gvriEDTVlVt 439 (1073)
.+ -...++++|++|.++.++.|.. + ..|..-+.-|++|.
T Consensus 81 ~~--h~~p~~~~l~~Gd~v~iD~g~~-~---------~gY~aD~~RT~~vG 119 (255)
T PRK12896 81 VA--HGIPGPRVIKDGDLVNIDVSAY-L---------DGYHGDTGITFAVG 119 (255)
T ss_pred eE--ecCCCCccCCCCCEEEEEEeEE-E---------CcEEEeeEEEEECC
Confidence 01 1112458899999999999976 3 33777888888874
No 57
>cd01088 MetAP2 Methionine Aminopeptidase 2. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.
Probab=95.39 E-value=0.11 Score=59.08 Aligned_cols=95 Identities=20% Similarity=0.211 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCccccccCCccccccccccccCC--CcccCCCCceecCC
Q 001468 327 VQSKAYEVLLKAHEAAISALKSGNKVSAAYKAASTVVEKDAPELAANLTRNAGTGIGLEFRESG--LSLNAKNDRILKAG 404 (1073)
Q Consensus 327 eq~~~y~~llea~~a~i~~lkPGvt~~dV~~aa~~~l~~~Gp~l~~~~~h~~GHgIGle~~E~p--~~l~~~~~~~L~~G 404 (1073)
.++++.+.+..+++++++.++||++..||.+.+...+.+.| ....|+ +++...+.. +..+.+++++|++|
T Consensus 3 ~~r~Aa~I~~~a~~~~~~~i~pG~te~ei~~~~~~~i~~~G--~~~afp------~~is~n~~~~H~~p~~~d~~~l~~G 74 (291)
T cd01088 3 KYREAGEIHRQVRKYAQSLIKPGMTLLEIAEFVENRIRELG--AGPAFP------VNLSINECAAHYTPNAGDDTVLKEG 74 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHcC--CCCCCC------ceeccCCEeeCCCCCCCCCcccCCC
Confidence 57888899999999999999999999999999999999988 222232 222222211 11123456899999
Q ss_pred cEEEEeeccccccCCCCCCCCCeeeEEEEEEEEEe
Q 001468 405 MVFNVSLGFQNLQTENKNPKTQKFSVLLADTVIVG 439 (1073)
Q Consensus 405 MVf~IEpG~~~l~~~~~~~~~~~~gvriEDTVlVt 439 (1073)
+++.+.+|.. + .| |..-+.-|+.|.
T Consensus 75 DvV~iD~G~~-~--------dG-Y~sD~arT~~vg 99 (291)
T cd01088 75 DVVKLDFGAH-V--------DG-YIADSAFTVDFD 99 (291)
T ss_pred CEEEEEEEEE-E--------CC-EEEEEEEEEecC
Confidence 9999999986 3 22 555566666653
No 58
>KOG2738 consensus Putative methionine aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=95.03 E-value=0.081 Score=58.62 Aligned_cols=98 Identities=15% Similarity=0.229 Sum_probs=71.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCcccc-----ccCCccccccc-cccccCCCcccCCCCc
Q 001468 326 TVQSKAYEVLLKAHEAAISALKSGNKVSAAYKAASTVVEKDAPELAA-----NLTRNAGTGIG-LEFRESGLSLNAKNDR 399 (1073)
Q Consensus 326 ~eq~~~y~~llea~~a~i~~lkPGvt~~dV~~aa~~~l~~~Gp~l~~-----~~~h~~GHgIG-le~~E~p~~l~~~~~~ 399 (1073)
+.++.+.....+++++|..+++||+|..+|+.++++.+-+.|. |.. .|++++--++- .-+|--| +.+
T Consensus 123 e~mR~ac~LarevLd~Aa~~v~PgvTTdEiD~~VH~a~Ierg~-YPSPLnYy~FPKS~CTSVNEviCHGIP------D~R 195 (369)
T KOG2738|consen 123 EGMRKACRLAREVLDYAATLVRPGVTTDEIDRAVHNAIIERGA-YPSPLNYYGFPKSVCTSVNEVICHGIP------DSR 195 (369)
T ss_pred HHHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHhcCC-cCCCcccCCCchhhhcchhheeecCCC------CcC
Confidence 4567777888899999999999999999999999998888872 332 24555433332 1123223 679
Q ss_pred eecCCcEEEEeeccccccCCCCCCCCCeeeEEEEEEEEEeC
Q 001468 400 ILKAGMVFNVSLGFQNLQTENKNPKTQKFSVLLADTVIVGE 440 (1073)
Q Consensus 400 ~L~~GMVf~IEpG~~~l~~~~~~~~~~~~gvriEDTVlVte 440 (1073)
+|+.|.+++|.+.+| + .| |---+.+|++|.+
T Consensus 196 pLedGDIvNiDVtvY-~--------~G-yHGDlneTffvG~ 226 (369)
T KOG2738|consen 196 PLEDGDIVNIDVTVY-L--------NG-YHGDLNETFFVGN 226 (369)
T ss_pred cCCCCCEEeEEEEEE-e--------cc-ccCccccceEeec
Confidence 999999999999999 3 12 3334677888854
No 59
>COG0024 Map Methionine aminopeptidase [Translation, ribosomal structure and biogenesis]
Probab=94.99 E-value=0.15 Score=56.56 Aligned_cols=86 Identities=14% Similarity=0.131 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCcccccc--CCccccccccccccCCCcccCCCCceecCC
Q 001468 327 VQSKAYEVLLKAHEAAISALKSGNKVSAAYKAASTVVEKDAPELAANL--TRNAGTGIGLEFRESGLSLNAKNDRILKAG 404 (1073)
Q Consensus 327 eq~~~y~~llea~~a~i~~lkPGvt~~dV~~aa~~~l~~~Gp~l~~~~--~h~~GHgIGle~~E~p~~l~~~~~~~L~~G 404 (1073)
.++++-+.+..+++++.+.++||++..||...+.+++.++| ..+.+ .+++...+.+.+.|.-.--.|++..+|++|
T Consensus 13 k~r~Ag~i~a~~l~~~~~~v~pGvtt~Eld~~~~~~i~~~g--a~pa~~gy~g~~~~~ciSvNe~v~HgiP~d~~vlk~G 90 (255)
T COG0024 13 KMREAGKIAAKALKEVASLVKPGVTTLELDEIAEEFIREKG--AYPAFLGYKGFPFPTCISVNEVVAHGIPGDKKVLKEG 90 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcC--ceehhccCcCCCcceEeehhheeeecCCCCCcccCCC
Confidence 45666677788888888999999999999999999999877 22222 223445566554443211123488999999
Q ss_pred cEEEEeeccc
Q 001468 405 MVFNVSLGFQ 414 (1073)
Q Consensus 405 MVf~IEpG~~ 414 (1073)
.+++|..|+.
T Consensus 91 Div~IDvg~~ 100 (255)
T COG0024 91 DIVKIDVGAH 100 (255)
T ss_pred CEEEEEEEEE
Confidence 9999999997
No 60
>KOG0526 consensus Nucleosome-binding factor SPN, POB3 subunit [Transcription; Replication, recombination and repair; Chromatin structure and dynamics]
Probab=94.76 E-value=0.014 Score=68.54 Aligned_cols=137 Identities=17% Similarity=0.184 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcccCCCceeeccCcccceeecccCceeeeeeCcccceeeccCCcEEEE
Q 001468 788 VEEEQRERARKNKINMDFQNFVNRVNDLWGQPQFKAFDLEFDQPLRELGFHGVPHKASAFIVPTSSCLVELIETPFVVIT 867 (1073)
Q Consensus 788 ~~~eq~e~~~~~~ln~~f~~f~~~v~~~~~~~~~~~~~~~f~~p~~~l~f~g~~~~~~~~l~pt~~clv~l~e~P~~vi~ 867 (1073)
|.+|+.+.+...+|.++|...++.|=..+=+. =++.+.-+|-+=+|= .-+|...|.....++- .-+
T Consensus 291 lsdE~l~~k~~~kL~k~ysg~i~Ev~s~V~k~---L~~rKit~Pg~F~s~---------~g~~av~CS~KAneG~--LYP 356 (615)
T KOG0526|consen 291 LSDEELEEKYKGKLKKEYSGPIYEVFSIVMKA---LCGRKITVPGEFLSH---------SGTAAVKCSFKANEGL--LYP 356 (615)
T ss_pred ccHHHHhhhhcchhhhhcCccHHHHHHHHHHH---HhCceeecccccccc---------CCCceeeeeecccCce--Eee
Confidence 57899999999999999999999885522111 134566666553333 3356777888888651 111
Q ss_pred cCceeEEEEEeecCCCcceeEEEEEecCCCCeEEEe--cccCCChhhHH---HHhhc--CCceeeecccCCChhhhhhhh
Q 001468 868 LSEIEIVNLERVGLGQKNFDMTIVFKDFKRDVLRID--SIPSSSLDGIK---EWLDT--TDLKYYESRLNLNWRPILKTI 940 (1073)
Q Consensus 868 l~eie~v~feRv~~~~k~FD~~~v~kd~~~~~~~i~--~I~~~~l~~ik---~wl~~--~~i~~~e~~~nlnW~~i~k~i 940 (1073)
+|| + +.|+ .+|+++|. -|.+-++..+- -=-.+ .-|. ..+...+...+|-|..
T Consensus 357 --------Lek-g-------FlFl----~KP~l~I~f~EIS~V~fsR~~~s~t~trtFD~ei~-lk~g~~~tFs~i~keE 415 (615)
T KOG0526|consen 357 --------LEK-G-------FLFL----PKPPLYIRFEEISSVNFSRSGLSGTSTRTFDFEIT-LKSGTSYTFSNISKEE 415 (615)
T ss_pred --------ccc-c-------eEee----cCCceEeeccceeeEEEEeccCCccceeeEEEEEE-EcCCCeeeecccCHHH
Confidence 222 1 1222 22222221 11111111110 00000 1111 2334567788888888
Q ss_pred ccCchhhhhcCCcccccCC
Q 001468 941 TDDPEKFIEDGGWEFLNME 959 (1073)
Q Consensus 941 ~~d~~~f~~~ggw~fl~~~ 959 (1073)
...-..|+..-|-..-+.+
T Consensus 416 ~~~L~~fl~sK~lki~N~~ 434 (615)
T KOG0526|consen 416 YGKLFDFLNSKGLKIRNEG 434 (615)
T ss_pred HHHHHHHHhhcCceeecCC
Confidence 8888889988777766553
No 61
>KOG1189 consensus Global transcriptional regulator, cell division control protein [Amino acid transport and metabolism]
Probab=94.63 E-value=0.019 Score=69.83 Aligned_cols=96 Identities=15% Similarity=0.146 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCHHHHHHHHHHHHHccchhhhhcccCCCCCCCCCeEEeC------CCCCC
Q 001468 209 IKKAAFLSSSVMKQFVVPKLEKVIDEEKKVSHSSLMDETEKAILEPARIKVKLKAENVDICYPPIFQSG------GEFDL 282 (1073)
Q Consensus 209 iR~Aa~ia~~a~~~~~~~~i~~iid~e~GvtE~eLa~~ie~~l~~~gk~~~~~g~~~~~~~y~piV~SG------~n~~l 282 (1073)
|.+|-..--++.. +++..++ ||..-.+|...+...+...+ ..+.+ .|+-.+++| .+ .+
T Consensus 259 mq~nY~fLl~aqe-~il~~lr------pG~ki~dVY~~~l~~v~k~~---Pel~~-----~~~k~lG~~iGlEFREs-sl 322 (960)
T KOG1189|consen 259 MQENYEFLLAAQE-EILKLLR------PGTKIGDVYEKALDYVEKNK---PELVP-----NFTKNLGFGIGLEFRES-SL 322 (960)
T ss_pred HHHHHHHHHHHHH-HHHHhhc------CCCchhHHHHHHHHHHHhcC---cchhh-----hhhhhcccccceeeecc-cc
Confidence 3555555555665 7777888 69999999998888887532 11111 111111211 11 22
Q ss_pred CCCCcCCCcccccCCcceEEEeeceee-------CCeEeeeEEEEEec
Q 001468 283 KPSASSNDNYLYYDSTSVIICAVGSRY-------NSYCSNVARTFLID 323 (1073)
Q Consensus 283 ~~h~~~~dr~L~~G~~dvI~vdlG~~y-------~GY~sditRT~~Vg 323 (1073)
... .-+++.|+.| .++.+.+|..- +.|.--++-|++|+
T Consensus 323 ~in-aKnd~~lk~g--mvFni~lGf~nl~n~~~~~~yaL~l~DTvlv~ 367 (960)
T KOG1189|consen 323 VIN-AKNDRVLKKG--MVFNISLGFSNLTNPESKNSYALLLSDTVLVG 367 (960)
T ss_pred ccc-ccchhhhccC--cEEEEeeccccccCcccccchhhhccceeeec
Confidence 122 2356899999 99999999632 45777799999996
No 62
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=93.87 E-value=0.021 Score=66.27 Aligned_cols=19 Identities=21% Similarity=0.637 Sum_probs=10.6
Q ss_pred hHHHHhhcCCceeeecccCCC
Q 001468 912 GIKEWLDTTDLKYYESRLNLN 932 (1073)
Q Consensus 912 ~ik~wl~~~~i~~~e~~~nln 932 (1073)
-..+|++.- ..+..++.||
T Consensus 11 e~ddWi~~~--~~~~~KlTi~ 29 (458)
T PF10446_consen 11 EEDDWIRQD--TDYKRKLTIN 29 (458)
T ss_pred chhhhhhcc--ccccccccHH
Confidence 356888877 3334444444
No 63
>PF05764 YL1: YL1 nuclear protein; InterPro: IPR008895 The proteins in this family are designated YL1 []. They have been shown to be DNA-binding and may be transcription factors [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=93.72 E-value=0.14 Score=56.54 Aligned_cols=8 Identities=13% Similarity=0.140 Sum_probs=4.1
Q ss_pred hhhhhhhc
Q 001468 934 RPILKTIT 941 (1073)
Q Consensus 934 ~~i~k~i~ 941 (1073)
++-|+.++
T Consensus 11 Gnrm~~LL 18 (240)
T PF05764_consen 11 GNRMKKLL 18 (240)
T ss_pred hHHHHHHH
Confidence 44555554
No 64
>TIGR00495 crvDNA_42K 42K curved DNA binding protein. Proteins identified by this model have been identified in a number of species as a nuclear (but not nucleolar) protein with a cell cycle dependence. Various names given to members of this family have included cell cycle protein p38-2G4, DNA-binding protein GBP16, and proliferation-associated protein 1. This protein is closely related to methionine aminopeptidase, a cobolt-binding protein.
Probab=93.67 E-value=0.45 Score=56.23 Aligned_cols=104 Identities=19% Similarity=0.293 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCc-ccc--ccCCccccccccccccCCCcccC--C-CCce
Q 001468 327 VQSKAYEVLLKAHEAAISALKSGNKVSAAYKAASTVVEKDAPE-LAA--NLTRNAGTGIGLEFRESGLSLNA--K-NDRI 400 (1073)
Q Consensus 327 eq~~~y~~llea~~a~i~~lkPGvt~~dV~~aa~~~l~~~Gp~-l~~--~~~h~~GHgIGle~~E~p~~l~~--~-~~~~ 400 (1073)
..+++-+.+..++.++++.++||++..||.+.+.+++.+.+.. |.. ...+.+++.+.+.+.+.-.-..| + +.++
T Consensus 21 ~~r~Aa~Ia~~~l~~~~~~ikpG~t~~el~~~~~~~i~~~~a~~~~~~~~~~~g~afpt~vSvN~~v~H~~P~~~d~~~~ 100 (389)
T TIGR00495 21 KYKMAGEIANNVLKSVVEACSPGAKVVDICEKGDAFIMEETAKIFKKEKEMEKGIAFPTCISVNNCVGHFSPLKSDQDYI 100 (389)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhhhhcccccccCCCCCCeEEecCCeeeCCCCCCCCCCcC
Confidence 4556666777888888999999999999999999999886521 000 01122333333322211100112 2 3489
Q ss_pred ecCCcEEEEeeccccccCCCCCCCCCeeeEEEEEEEEEeC
Q 001468 401 LKAGMVFNVSLGFQNLQTENKNPKTQKFSVLLADTVIVGE 440 (1073)
Q Consensus 401 L~~GMVf~IEpG~~~l~~~~~~~~~~~~gvriEDTVlVte 440 (1073)
|++|.++.|..|.. + .+|..-+..||+|..
T Consensus 101 Lk~GDvVkIDlG~~-i---------dGY~aD~arTv~vG~ 130 (389)
T TIGR00495 101 LKEGDVVKIDLGCH-I---------DGFIALVAHTFVVGV 130 (389)
T ss_pred cCCCCEEEEEEEEE-E---------CCEEEEEEEEEEECC
Confidence 99999999999987 4 348889999999964
No 65
>PRK08671 methionine aminopeptidase; Provisional
Probab=93.06 E-value=0.78 Score=52.11 Aligned_cols=97 Identities=18% Similarity=0.173 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCccccccCCccccccccccccCCCcccCCCCceecCCcE
Q 001468 327 VQSKAYEVLLKAHEAAISALKSGNKVSAAYKAASTVVEKDAPELAANLTRNAGTGIGLEFRESGLSLNAKNDRILKAGMV 406 (1073)
Q Consensus 327 eq~~~y~~llea~~a~i~~lkPGvt~~dV~~aa~~~l~~~Gp~l~~~~~h~~GHgIGle~~E~p~~l~~~~~~~L~~GMV 406 (1073)
..+++-+.+..+..++++.++||++..||.+.+...+.+.| ....|+.+++-+-. ..|-.| .+.++++|++|.+
T Consensus 4 ~~r~A~~I~~~~~~~~~~~i~pG~se~ei~~~~~~~i~~~g--~~~afp~~vs~n~~-~~H~~p---~~~d~~~l~~GDv 77 (291)
T PRK08671 4 KYLEAGKIASKVREEAAKLIKPGAKLLDVAEFVENRIRELG--AKPAFPCNISINEV-AAHYTP---SPGDERVFPEGDV 77 (291)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcC--CccCCCCEEeeCCC-ccCCCC---CCCCCcccCCCCE
Confidence 46778888889999999999999999999999999999988 33334433321111 123333 2345678999999
Q ss_pred EEEeeccccccCCCCCCCCCeeeEEEEEEEEEe
Q 001468 407 FNVSLGFQNLQTENKNPKTQKFSVLLADTVIVG 439 (1073)
Q Consensus 407 f~IEpG~~~l~~~~~~~~~~~~gvriEDTVlVt 439 (1073)
+.|..|.. + .+|..-+.-|+.|.
T Consensus 78 V~iD~G~~-~---------dGY~aD~arT~~vG 100 (291)
T PRK08671 78 VKLDLGAH-V---------DGYIADTAVTVDLG 100 (291)
T ss_pred EEEEEeEE-E---------CCEEEEEEEEEEeC
Confidence 99999986 3 23777778888875
No 66
>TIGR00501 met_pdase_II methionine aminopeptidase, type II. Methionine aminopeptidase (map) is a cobalt-binding enzyme. Bacterial and organellar examples (type I) differ from eukaroytic and archaeal (type II) examples in lacking a region of approximately 60 amino acids between the 4th and 5th cobalt-binding ligands. The role of this protein in general is to produce the mature amino end of cytosolic proteins by removing the N-terminal methionine. This model describes type II, among which the eukaryotic members typically have an N-terminal extension not present in archaeal members. It can act cotranslationally. The enzyme from rat has been shown to associate with translation initiation factor 2 (IF-2) and may have a role in translational regulation.
Probab=93.01 E-value=0.77 Score=52.28 Aligned_cols=97 Identities=16% Similarity=0.145 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCccccccCCccccccccccccCCCcccCCCCceecCCcE
Q 001468 327 VQSKAYEVLLKAHEAAISALKSGNKVSAAYKAASTVVEKDAPELAANLTRNAGTGIGLEFRESGLSLNAKNDRILKAGMV 406 (1073)
Q Consensus 327 eq~~~y~~llea~~a~i~~lkPGvt~~dV~~aa~~~l~~~Gp~l~~~~~h~~GHgIGle~~E~p~~l~~~~~~~L~~GMV 406 (1073)
..+++-+.+..+++.+++.++||++..||.+.+...+.+.|. ...|+..+.-+ ..-.|-.| ++.+.++|++|.+
T Consensus 7 ~~r~A~~I~~~~~~~~~~~i~~G~se~el~~~~e~~~~~~g~--~~aFp~~vs~n-~~~~H~~p---~~~d~~~l~~GDv 80 (295)
T TIGR00501 7 KWIEAGKIHSKVRREAADRIVPGVKLLEVAEFVENRIRELGA--EPAFPCNISIN-ECAAHFTP---KAGDKTVFKDGDV 80 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHCcCCCCHHHHHHHHHHHHHHcCC--CCCCCcceecC-CEeeCCCC---CCCcCccCCCCCE
Confidence 456677777888888999999999999999999999999883 33444433211 01123333 2345678999999
Q ss_pred EEEeeccccccCCCCCCCCCeeeEEEEEEEEEe
Q 001468 407 FNVSLGFQNLQTENKNPKTQKFSVLLADTVIVG 439 (1073)
Q Consensus 407 f~IEpG~~~l~~~~~~~~~~~~gvriEDTVlVt 439 (1073)
+.|..|.. + .+|..-+.-|+.|.
T Consensus 81 V~iD~G~~-~---------dGY~aD~arT~~vG 103 (295)
T TIGR00501 81 VKLDLGAH-V---------DGYIADTAITVDLG 103 (295)
T ss_pred EEEEEeEE-E---------CCEEEEEEEEEEeC
Confidence 99999987 3 33777888888884
No 67
>PF00557 Peptidase_M24: Metallopeptidase family M24 This Prosite entry corresponds to sub-family M24B This Prosite entry corresponds to sub-families M24A and M24C; InterPro: IPR000994 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This entry contains proteins that belong to MEROPS peptidase family M24 (clan MG), which share a common structural-fold, the "pita-bread" fold. The fold contains both alpha helices and an anti-parallel beta sheet within two structurally similar domains that are thought to be derived from an ancient gene duplication. The active site, where conserved, is located between the two domains. The fold is common to methionine aminopeptidase (3.4.11.18 from EC), aminopeptidase P (3.4.11.9 from EC), prolidase (3.4.13.9 from EC), agropine synthase and creatinase (3.5.3.3 from EC). Though many of these peptidases require a divalent cation, creatinase is not a metal-dependent enzyme [, , ]. The entry also contains proteins that have lost catalytic activity, for example Spt16, which is a component of the FACT complex. The crystal structure of the N-terminal domain of Spt16, determined to 2.1A, reveals an aminopeptidase P fold whose enzymatic activity has been lost. This fold binds directly to histones H3-H4 through a interaction with their globular core domains, as well as with their N-terminal tails []. The FACT complex is a stable heterodimer in Saccharomyces cerevisiae (Baker's yeast) comprising Spt16p (P32558 from SWISSPROT, IPR013953 from INTERPRO) and Pob3p (Q04636 from SWISSPROT, IPR000969 from INTERPRO). The complex plays a role in transcription initiation and promotes binding of TATA-binding protein (TBP) to a TATA box in chromatin []; it also facilitates RNA Polymerase II transcription elongation through nucleosomes by destabilising and then reassembling nucleosome structure [, , ]. ; GO: 0009987 cellular process; PDB: 4A6V_B 4A6W_A 3CTZ_A 3IG4_B 2B3H_A 2NQ6_A 2NQ7_A 2GZ5_A 2G6P_A 2B3L_A ....
Probab=92.22 E-value=0.85 Score=48.52 Aligned_cols=96 Identities=23% Similarity=0.241 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHhcCCccccccCCccccccccccccCCCcccCCCCceecCCc
Q 001468 327 VQSKAYEVLLKAHEAAISALKSGNKVSAAYKAASTV-VEKDAPELAANLTRNAGTGIGLEFRESGLSLNAKNDRILKAGM 405 (1073)
Q Consensus 327 eq~~~y~~llea~~a~i~~lkPGvt~~dV~~aa~~~-l~~~Gp~l~~~~~h~~GHgIGle~~E~p~~l~~~~~~~L~~GM 405 (1073)
..|++.+.+.++..++++.++||++-.+|...+... +...|..... |+. --+.|-...= +. ..+ ++++|++|+
T Consensus 2 ~~R~a~~i~~~~~~~~~~~~~~G~te~ei~~~~~~~~~~~~g~~~~~-~~~--~~~~g~~~~~-~~-~~~-~~~~l~~gd 75 (207)
T PF00557_consen 2 CMRKAARIADAAMEAAMEALRPGMTEYEIAAAIERAMLRRHGGEEPA-FPP--IVGSGPNTDL-PH-YTP-TDRRLQEGD 75 (207)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTCBHHHHHHHHHHHHHHHTTTTEES-SES--EEEECCCCGE-TT-TBC-CSSBESTTE
T ss_pred HHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHcCCCccc-CCc--eEecCCccee-cc-eec-cceeeecCC
Confidence 468888999999999999999999999999999987 6666621111 111 1112211110 11 122 578899999
Q ss_pred EEEEeeccccccCCCCCCCCCeeeEEEEEEEEE
Q 001468 406 VFNVSLGFQNLQTENKNPKTQKFSVLLADTVIV 438 (1073)
Q Consensus 406 Vf~IEpG~~~l~~~~~~~~~~~~gvriEDTVlV 438 (1073)
++.++.+.. + ..|..-+.-|++|
T Consensus 76 ~v~id~~~~-~---------~gy~~d~~Rt~~~ 98 (207)
T PF00557_consen 76 IVIIDFGPR-Y---------DGYHADIARTFVV 98 (207)
T ss_dssp EEEEEEEEE-E---------TTEEEEEEEEEES
T ss_pred cceeeccce-e---------eeeEeeeeeEEEE
Confidence 999999876 2 3488888889876
No 68
>TIGR00500 met_pdase_I methionine aminopeptidase, type I. Methionine aminopeptidase is a cobalt-binding enzyme. Bacterial and organellar examples (type I) differ from eukaroytic and archaeal (type II) examples in lacking a region of approximately 60 amino acids between the 4th and 5th cobalt-binding ligands. This model describes type I. The role of this protein in general is to produce the mature form of cytosolic proteins by removing the N-terminal methionine.
Probab=91.97 E-value=1.2 Score=49.14 Aligned_cols=100 Identities=19% Similarity=0.223 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCccccccCCccccc--cccccccCCCcccCCCCceecCC
Q 001468 327 VQSKAYEVLLKAHEAAISALKSGNKVSAAYKAASTVVEKDAPELAANLTRNAGTG--IGLEFRESGLSLNAKNDRILKAG 404 (1073)
Q Consensus 327 eq~~~y~~llea~~a~i~~lkPGvt~~dV~~aa~~~l~~~Gp~l~~~~~h~~GHg--IGle~~E~p~~l~~~~~~~L~~G 404 (1073)
..+++.+.+.++..++++.++||++-.||...+...+.+.|. ...+....++. ++......- .-...++++|++|
T Consensus 11 ~~r~A~~i~~~~~~~~~~~i~~G~tE~el~~~~~~~~~~~G~--~~~~~~~~~~~~~~~~~~n~~~-~H~~~~~~~l~~G 87 (247)
T TIGR00500 11 KIRKAGRLAAEVLEELEREVKPGVSTKELDRIAKDFIEKHGA--KPAFLGYYGFPGSVCISVNEVV-IHGIPDKKVLKDG 87 (247)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHCCC--CccccCCCCCCceeEeccccEE-EecCCCCcccCCC
Confidence 356677777788888889999999999999999999999883 22221111111 111111110 0011257899999
Q ss_pred cEEEEeeccccccCCCCCCCCCeeeEEEEEEEEEe
Q 001468 405 MVFNVSLGFQNLQTENKNPKTQKFSVLLADTVIVG 439 (1073)
Q Consensus 405 MVf~IEpG~~~l~~~~~~~~~~~~gvriEDTVlVt 439 (1073)
.++.+..|.. + ..|..-+.-|+.|.
T Consensus 88 d~v~iD~g~~-~---------~gY~aD~~RT~~vG 112 (247)
T TIGR00500 88 DIVNIDVGVI-Y---------DGYHGDTAKTFLVG 112 (247)
T ss_pred CEEEEEEEEE-E---------CCEEEEEEEEEEcC
Confidence 9999999975 2 34888888899884
No 69
>KOG3064 consensus RNA-binding nuclear protein (MAK16) containing a distinct C4 Zn-finger [RNA processing and modification]
Probab=91.82 E-value=0.12 Score=56.11 Aligned_cols=15 Identities=7% Similarity=0.561 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHhh
Q 001468 800 KINMDFQNFVNRVND 814 (1073)
Q Consensus 800 ~ln~~f~~f~~~v~~ 814 (1073)
+|.+-|..=+++|.+
T Consensus 81 kLSkNyekALeQIde 95 (303)
T KOG3064|consen 81 KLSKNYEKALEQIDE 95 (303)
T ss_pred hcchhHHHHHHHHHH
Confidence 344555555555544
No 70
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=91.57 E-value=0.22 Score=54.06 Aligned_cols=24 Identities=21% Similarity=0.297 Sum_probs=11.4
Q ss_pred EcCceeEEEEEeecC--CCcceeEEE
Q 001468 867 TLSEIEIVNLERVGL--GQKNFDMTI 890 (1073)
Q Consensus 867 ~l~eie~v~feRv~~--~~k~FD~~~ 890 (1073)
+|.|-.-+.-||-.- |.|-|-..|
T Consensus 122 pl~da~C~EC~R~vw~hGGrif~Csf 147 (314)
T PF06524_consen 122 PLQDAVCIECERGVWDHGGRIFKCSF 147 (314)
T ss_pred cCCCcEeeeeecccccCCCeEEEeec
Confidence 444555555555432 445444443
No 71
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=91.53 E-value=0.14 Score=66.01 Aligned_cols=13 Identities=31% Similarity=0.624 Sum_probs=8.6
Q ss_pred CChhHHHHHHHHH
Q 001468 783 YDPDEVEEEQRER 795 (1073)
Q Consensus 783 ~d~de~~~eq~e~ 795 (1073)
-.++|+.+|++||
T Consensus 271 KT~EE~a~ee~er 283 (840)
T PF04147_consen 271 KTEEEIAKEEKER 283 (840)
T ss_pred CCHHHHHHHHHHH
Confidence 3678888775444
No 72
>PTZ00053 methionine aminopeptidase 2; Provisional
Probab=91.43 E-value=1.3 Score=53.34 Aligned_cols=92 Identities=20% Similarity=0.138 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc----CCccccccCCcccc--ccccc---cccCCCcccCCCC
Q 001468 328 QSKAYEVLLKAHEAAISALKSGNKVSAAYKAASTVVEKD----APELAANLTRNAGT--GIGLE---FRESGLSLNAKND 398 (1073)
Q Consensus 328 q~~~y~~llea~~a~i~~lkPGvt~~dV~~aa~~~l~~~----Gp~l~~~~~h~~GH--gIGle---~~E~p~~l~~~~~ 398 (1073)
.+++-+.+..++.++.+.++||++..||...+...+.+. | +. ...|+ ++++. .|-.| ++++.
T Consensus 161 ~R~AaeIa~~vl~~~~~~IkpG~se~EIa~~ie~~ir~~~~~~G--~~----~g~aFPt~vS~N~~aaH~tP---~~gd~ 231 (470)
T PTZ00053 161 LRRAAEVHRQVRRYAQSVIKPGVKLIDICERIESKSRELIEADG--LK----CGWAFPTGCSLNHCAAHYTP---NTGDK 231 (470)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHhcC--Cc----ccCCCCceeecCccccCCCC---CCCCC
Confidence 455555666677777888999999999998777755543 4 21 11233 23322 22222 23456
Q ss_pred ceecCCcEEEEeeccccccCCCCCCCCCeeeEEEEEEEEE
Q 001468 399 RILKAGMVFNVSLGFQNLQTENKNPKTQKFSVLLADTVIV 438 (1073)
Q Consensus 399 ~~L~~GMVf~IEpG~~~l~~~~~~~~~~~~gvriEDTVlV 438 (1073)
++|+.|.++.|..|.. + .+|-.-+.-||.|
T Consensus 232 ~vLk~GDvVkID~G~~-v---------dGYiaD~ArTv~v 261 (470)
T PTZ00053 232 TVLTYDDVCKLDFGTH-V---------NGRIIDCAFTVAF 261 (470)
T ss_pred cEecCCCeEEEEEeEE-E---------CCEEEeEEEEEEe
Confidence 8999999999999987 4 2366677778776
No 73
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=91.27 E-value=0.11 Score=63.76 Aligned_cols=19 Identities=11% Similarity=-0.001 Sum_probs=11.1
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 001468 326 TVQSKAYEVLLKAHEAAIS 344 (1073)
Q Consensus 326 ~eq~~~y~~llea~~a~i~ 344 (1073)
...+.+|...+++.++...
T Consensus 296 ~~LK~ly~rfievLe~lS~ 314 (988)
T KOG2038|consen 296 HELKILYFRFIEVLEELSK 314 (988)
T ss_pred HHHHHHHHHHHHHHHHHcc
Confidence 3456666666666655543
No 74
>cd01089 PA2G4-like Related to aminopepdidase M, this family contains proliferation-associated protein 2G4. Family members have been implicated in cell cycle control.
Probab=90.65 E-value=2.1 Score=46.67 Aligned_cols=101 Identities=20% Similarity=0.271 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCcccc---ccCCcccccccccc-----ccCCCcccCCCC
Q 001468 327 VQSKAYEVLLKAHEAAISALKSGNKVSAAYKAASTVVEKDAPELAA---NLTRNAGTGIGLEF-----RESGLSLNAKND 398 (1073)
Q Consensus 327 eq~~~y~~llea~~a~i~~lkPGvt~~dV~~aa~~~l~~~Gp~l~~---~~~h~~GHgIGle~-----~E~p~~l~~~~~ 398 (1073)
..+++-+.+..+++++++.++||++-.||...+.+.+.+....+.. ......++.+.+.+ |-.|. ...++
T Consensus 3 ~~r~A~~I~~~~~~~~~~~i~pG~te~ei~~~~e~~i~~~~~~~~~~~~~g~~g~~~~~~v~~n~~~~H~~p~--~~~~~ 80 (228)
T cd01089 3 KYKTAGQIANKVLKQVISLCVPGAKVVDLCEKGDKLILEELGKVYKKEKKLEKGIAFPTCISVNNCVCHFSPL--KSDAT 80 (228)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHhhcccccCcccccCCCCcCeEeccCceeecCCCC--CCCCC
Confidence 4678888899999999999999999999988888777774310100 00011222111111 21221 01367
Q ss_pred ceecCCcEEEEeeccccccCCCCCCCCCeeeEEEEEEEEEe
Q 001468 399 RILKAGMVFNVSLGFQNLQTENKNPKTQKFSVLLADTVIVG 439 (1073)
Q Consensus 399 ~~L~~GMVf~IEpG~~~l~~~~~~~~~~~~gvriEDTVlVt 439 (1073)
++|++|.++.|..|.. + ..|..-+.-|+.|.
T Consensus 81 ~~l~~Gd~v~iD~g~~-~---------~GY~sD~tRT~~vG 111 (228)
T cd01089 81 YTLKDGDVVKIDLGCH-I---------DGYIAVVAHTIVVG 111 (228)
T ss_pred cccCCCCEEEEEEEEE-E---------CCEEEEEEEEEEeC
Confidence 8899999999999986 3 34888889999985
No 75
>cd01087 Prolidase Prolidase. E.C. 3.4.13.9. Also known as Xaa-Pro dipeptidase, X-Pro dipeptidase, proline dipeptidase., imidodipeptidase, peptidase D, gamma-peptidase. Catalyses hydrolysis of Xaa-Pro dipeptides; also acts on aminoacyl-hydroxyproline analogs. No action on Pro-Pro.
Probab=90.64 E-value=2.1 Score=47.02 Aligned_cols=95 Identities=18% Similarity=0.151 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCccccccCCccccccccccccCCCcccCCCCceecCCcE
Q 001468 327 VQSKAYEVLLKAHEAAISALKSGNKVSAAYKAASTVVEKDAPELAANLTRNAGTGIGLEFRESGLSLNAKNDRILKAGMV 406 (1073)
Q Consensus 327 eq~~~y~~llea~~a~i~~lkPGvt~~dV~~aa~~~l~~~Gp~l~~~~~h~~GHgIGle~~E~p~~l~~~~~~~L~~GMV 406 (1073)
..+++.+.+..+..++++.++||++-.+|...+...+.+.|.+ ..|+..++-|.. . ..|. ...++++|++|.+
T Consensus 3 ~lr~A~~i~~~~~~~~~~~i~pG~tE~ei~~~~~~~~~~~G~~--~~~~~~v~~g~~--~-~~~H--~~~~~~~l~~Gd~ 75 (243)
T cd01087 3 LMRKACDISAEAHRAAMKASRPGMSEYELEAEFEYEFRSRGAR--LAYSYIVAAGSN--A-AILH--YVHNDQPLKDGDL 75 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHHcCCC--cCCCCeEEECCC--c-cccC--CCcCCCcCCCCCE
Confidence 4678888999999999999999999999999999999999843 223222222211 1 0111 1124678999999
Q ss_pred EEEeeccccccCCCCCCCCCeeeEEEEEEEEE
Q 001468 407 FNVSLGFQNLQTENKNPKTQKFSVLLADTVIV 438 (1073)
Q Consensus 407 f~IEpG~~~l~~~~~~~~~~~~gvriEDTVlV 438 (1073)
+.+..|.. + ..|-.-+.-|+.|
T Consensus 76 v~vD~g~~-~---------~GY~ad~~Rt~~v 97 (243)
T cd01087 76 VLIDAGAE-Y---------GGYASDITRTFPV 97 (243)
T ss_pred EEEEeCce-E---------CCEeeeeeEEEEe
Confidence 99999876 2 3377777788877
No 76
>cd01092 APP-like Similar to Prolidase and Aminopeptidase P. The members of this subfamily presumably catalyse hydrolysis of Xaa-Pro dipeptides and/or release of any N-terminal amino acid, including proline, that is linked with proline.
Probab=90.55 E-value=1.6 Score=46.19 Aligned_cols=98 Identities=19% Similarity=0.216 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCccccccCCccccccccccccCCCcccCCCCceecCCcE
Q 001468 327 VQSKAYEVLLKAHEAAISALKSGNKVSAAYKAASTVVEKDAPELAANLTRNAGTGIGLEFRESGLSLNAKNDRILKAGMV 406 (1073)
Q Consensus 327 eq~~~y~~llea~~a~i~~lkPGvt~~dV~~aa~~~l~~~Gp~l~~~~~h~~GHgIGle~~E~p~~l~~~~~~~L~~GMV 406 (1073)
..+++.+.+..+..++.+.++||++-.||...+...+.+.|.+ ...|+..++.|. .. ..+ -...++++|++|.+
T Consensus 3 ~~r~a~~i~~~~~~~~~~~~~~G~te~ei~~~~~~~~~~~g~~-~~~~~~~v~~g~--~~-~~~--h~~~~~~~l~~gd~ 76 (208)
T cd01092 3 LLRKAARIADKAFEELLEFIKPGMTEREVAAELEYFMRKLGAE-GPSFDTIVASGP--NS-ALP--HGVPSDRKIEEGDL 76 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHCcCCCCHHHHHHHHHHHHHHcCCC-CCCCCcEEEECc--cc-ccc--CCCCCCcCcCCCCE
Confidence 4677888888999999999999999999999999999888822 112222222222 11 011 11224678999999
Q ss_pred EEEeeccccccCCCCCCCCCeeeEEEEEEEEEeC
Q 001468 407 FNVSLGFQNLQTENKNPKTQKFSVLLADTVIVGE 440 (1073)
Q Consensus 407 f~IEpG~~~l~~~~~~~~~~~~gvriEDTVlVte 440 (1073)
+.++.|.. . ..|..-+.-|++|++
T Consensus 77 v~id~g~~-~---------~gy~~d~~RT~~~g~ 100 (208)
T cd01092 77 VLIDFGAI-Y---------DGYCSDITRTVAVGE 100 (208)
T ss_pred EEEEeeee-E---------CCEeccceeEEECCC
Confidence 99999875 2 347778888998863
No 77
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=90.36 E-value=0.2 Score=64.78 Aligned_cols=15 Identities=20% Similarity=0.594 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHH
Q 001468 798 KNKINMDFQNFVNRV 812 (1073)
Q Consensus 798 ~~~ln~~f~~f~~~v 812 (1073)
+.+|+..|......+
T Consensus 211 ~e~LD~~~~~l~~~l 225 (840)
T PF04147_consen 211 TEKLDEDFKDLMSLL 225 (840)
T ss_pred HHHHHHhHHHHHHHH
Confidence 334444444444433
No 78
>PRK12897 methionine aminopeptidase; Reviewed
Probab=90.35 E-value=2.2 Score=47.13 Aligned_cols=98 Identities=14% Similarity=0.108 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCccc----cccCCccccccccccccCCCcccCCCCceec
Q 001468 327 VQSKAYEVLLKAHEAAISALKSGNKVSAAYKAASTVVEKDAPELA----ANLTRNAGTGIGLEFRESGLSLNAKNDRILK 402 (1073)
Q Consensus 327 eq~~~y~~llea~~a~i~~lkPGvt~~dV~~aa~~~l~~~Gp~l~----~~~~h~~GHgIGle~~E~p~~l~~~~~~~L~ 402 (1073)
..+++-+....++.++++.++||++-.+|...+...+.+.|.... ..|+..+ ..|. +.. ..-...++++|+
T Consensus 12 ~~r~A~~i~~~~~~~~~~~~~~G~tE~el~~~~~~~~~~~G~~~~~~~~~~~~~~i--~~g~--n~~-~~H~~p~~~~l~ 86 (248)
T PRK12897 12 LMHESGKLLASCHREIAKIMKPGITTKEINTFVEAYLEKHGATSEQKGYNGYPYAI--CASV--NDE-MCHAFPADVPLT 86 (248)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccCCCCcce--Eecc--CCE-eecCCCCCcccC
Confidence 456777777888889999999999999999999999999883211 0111111 1121 111 000122467899
Q ss_pred CCcEEEEeeccccccCCCCCCCCCeeeEEEEEEEEEe
Q 001468 403 AGMVFNVSLGFQNLQTENKNPKTQKFSVLLADTVIVG 439 (1073)
Q Consensus 403 ~GMVf~IEpG~~~l~~~~~~~~~~~~gvriEDTVlVt 439 (1073)
+|.++.+..|.. + ..|..-+.-|+.|.
T Consensus 87 ~Gd~V~iD~g~~-~---------~GY~sD~tRT~~vG 113 (248)
T PRK12897 87 EGDIVTIDMVVN-L---------NGGLSDSAWTYRVG 113 (248)
T ss_pred CCCEEEEEeeEE-E---------CCEEEEEEEEEEcC
Confidence 999999999875 3 33777788888873
No 79
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=90.16 E-value=0.17 Score=62.20 Aligned_cols=13 Identities=23% Similarity=0.434 Sum_probs=7.9
Q ss_pred hhhhcCCcccccC
Q 001468 946 KFIEDGGWEFLNM 958 (1073)
Q Consensus 946 ~f~~~ggw~fl~~ 958 (1073)
+=+++--|.|+..
T Consensus 834 Ee~eeel~~~~~~ 846 (988)
T KOG2038|consen 834 EEFEEELWRFEDG 846 (988)
T ss_pred HHHHHHHHHhcCC
Confidence 3346667777754
No 80
>COG5406 Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]
Probab=89.19 E-value=0.21 Score=60.00 Aligned_cols=69 Identities=14% Similarity=0.095 Sum_probs=38.1
Q ss_pred HHHHHhhhcccccCCCCHHHHHHHHHHHHHccchhhhhcccCCCCCCCCCeEEeCC----CCCCCCCCcCCCcccccCCc
Q 001468 223 FVVPKLEKVIDEEKKVSHSSLMDETEKAILEPARIKVKLKAENVDICYPPIFQSGG----EFDLKPSASSNDNYLYYDST 298 (1073)
Q Consensus 223 ~~~~~i~~iid~e~GvtE~eLa~~ie~~l~~~gk~~~~~g~~~~~~~y~piV~SG~----n~~l~~h~~~~dr~L~~G~~ 298 (1073)
.+...++ ||.+-.+|...++..+...+ ..+++ .|.-.|+++- +..-.+-..-++|.|+.|
T Consensus 313 ~i~~~~r------pG~~~g~iY~~~~~yi~~~~---pel~p-----nF~~nvG~~igiefR~s~~~~nvkn~r~lq~g-- 376 (1001)
T COG5406 313 YILGLVR------PGTDSGIIYSEAEKYISSNG---PELGP-----NFIYNVGLMIGIEFRSSQKPFNVKNGRVLQAG-- 376 (1001)
T ss_pred HHHhhcC------CCCCchhHHHHHHHHHHhcC---CccCc-----hHhhhhhhhccccccccccceeccCCceeccc--
Confidence 5555666 58888888888888776532 12232 2221232221 111123334456778887
Q ss_pred ceEEEeece
Q 001468 299 SVIICAVGS 307 (1073)
Q Consensus 299 dvI~vdlG~ 307 (1073)
+++.+++|.
T Consensus 377 ~~fnis~gf 385 (1001)
T COG5406 377 CIFNISLGF 385 (1001)
T ss_pred cEEEEeecc
Confidence 777777763
No 81
>cd01066 APP_MetAP A family including aminopeptidase P, aminopeptidase M, and prolidase. Also known as metallopeptidase family M24. This family of enzymes is able to cleave amido-, imido- and amidino-containing bonds. Members exibit relatively narrow substrate specificity compared to other metallo-aminopeptidases, suggesting they play roles in regulation of biological processes rather than general protein degradation.
Probab=87.48 E-value=3.3 Score=43.24 Aligned_cols=97 Identities=23% Similarity=0.196 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCccccccCCccccccccccccCCCcccCCCCceecCCcE
Q 001468 327 VQSKAYEVLLKAHEAAISALKSGNKVSAAYKAASTVVEKDAPELAANLTRNAGTGIGLEFRESGLSLNAKNDRILKAGMV 406 (1073)
Q Consensus 327 eq~~~y~~llea~~a~i~~lkPGvt~~dV~~aa~~~l~~~Gp~l~~~~~h~~GHgIGle~~E~p~~l~~~~~~~L~~GMV 406 (1073)
..+++-..+..+..++.+.++||++-.|+...+...+.+.| . .+...+--+.|-.. ..+. ...++++|++|.+
T Consensus 3 ~~r~a~~i~~~~~~~~~~~~~~G~te~ei~~~~~~~~~~~g--~--~~~~~~~v~~g~~~-~~~h--~~~~~~~i~~gd~ 75 (207)
T cd01066 3 RLRKAAEIAEAAMAAAAEAIRPGVTEAEVAAAIEQALRAAG--G--YPAGPTIVGSGART-ALPH--YRPDDRRLQEGDL 75 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHCcCCCCHHHHHHHHHHHHHHcC--C--CCCCCcEEEECccc-cCcC--CCCCCCCcCCCCE
Confidence 46778888899999999999999999999999999999998 3 11111112222110 0111 1123679999999
Q ss_pred EEEeeccccccCCCCCCCCCeeeEEEEEEEEEeC
Q 001468 407 FNVSLGFQNLQTENKNPKTQKFSVLLADTVIVGE 440 (1073)
Q Consensus 407 f~IEpG~~~l~~~~~~~~~~~~gvriEDTVlVte 440 (1073)
+.+..|.. . ..|..-+..|+.|.+
T Consensus 76 v~~d~g~~-~---------~gy~~d~~rt~~~g~ 99 (207)
T cd01066 76 VLVDLGGV-Y---------DGYHADLTRTFVIGE 99 (207)
T ss_pred EEEEecee-E---------CCCccceeceeEcCC
Confidence 99999986 2 347778888888853
No 82
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=86.38 E-value=0.19 Score=62.91 Aligned_cols=21 Identities=33% Similarity=0.347 Sum_probs=10.6
Q ss_pred eeEEEEEecCCCCeEEEecccC
Q 001468 886 FDMTIVFKDFKRDVLRIDSIPS 907 (1073)
Q Consensus 886 FD~~~v~kd~~~~~~~i~~I~~ 907 (1073)
.+++|..=|.+|| ++++||-.
T Consensus 74 ~~~~iyViDshRP-~~L~Nv~~ 94 (622)
T PF02724_consen 74 EDVTIYVIDSHRP-WNLDNVFS 94 (622)
T ss_pred CceEEEEEeCCCC-ccHhhccC
Confidence 4555555565664 45444433
No 83
>PTZ00007 (NAP-L) nucleosome assembly protein -L; Provisional
Probab=84.99 E-value=4.1 Score=47.17 Aligned_cols=94 Identities=21% Similarity=0.262 Sum_probs=52.0
Q ss_pred hHHHHH--HHHHHHHHHHHHHHHHHHHHHhhccCCCcccCCCceeeccCcccceeecccC-ceeee-eeCcccceeeccC
Q 001468 786 DEVEEE--QRERARKNKINMDFQNFVNRVNDLWGQPQFKAFDLEFDQPLRELGFHGVPHK-ASAFI-VPTSSCLVELIET 861 (1073)
Q Consensus 786 de~~~e--q~e~~~~~~ln~~f~~f~~~v~~~~~~~~~~~~~~~f~~p~~~l~f~g~~~~-~~~~l-~pt~~clv~l~e~ 861 (1073)
+.|++| .+-.+++++.++.|+-...+=.+|+..... .+.+=.|+|+= -+|+. .|...|++.-.+.
T Consensus 54 ~~le~ef~~ev~~LE~kY~~~~~Ply~kR~eII~G~~~-----------~e~~~~gIP~FWl~vL~Nh~~ls~~I~e~De 122 (337)
T PTZ00007 54 DDLEVEYNAELRKLRSKYEDLYNPIYDKRKEALVQNGG-----------AEIGTPGLPQFWLTAMKNNNTLGSAIEEHDE 122 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcCCcc-----------cccccCCcccHHHHHHHcCccHhhhCCHHHH
Confidence 445544 334466666666666665555554321100 01122344431 11111 2677788887777
Q ss_pred CcEEEEcCceeEEEEEeecCCC-cceeEEEEEec
Q 001468 862 PFVVITLSEIEIVNLERVGLGQ-KNFDMTIVFKD 894 (1073)
Q Consensus 862 P~~vi~l~eie~v~feRv~~~~-k~FD~~~v~kd 894 (1073)
|.| --|.+|++..++ ... +.|-|+|.|+.
T Consensus 123 ~iL-~~L~dI~ve~~~---~~~~~gf~I~F~F~~ 152 (337)
T PTZ00007 123 PIL-SYLSDISCEYTE---PNKQEGFILVFTFAP 152 (337)
T ss_pred HHH-HhhCceEEEEcc---CCCCCceEEEEEeCC
Confidence 886 678888876542 222 78999999975
No 84
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=84.96 E-value=0.64 Score=59.18 Aligned_cols=29 Identities=24% Similarity=0.340 Sum_probs=19.0
Q ss_pred eCCccccccc-ccCCHHHH-HHHHHHHHHHH
Q 001468 189 DVSNGFSDLF-AIKDDTEL-TNIKKAAFLSS 217 (1073)
Q Consensus 189 Dvs~~l~~lR-~VKd~~EI-~~iR~Aa~ia~ 217 (1073)
|+-..-..+| ...+|+|+ ..|.+|+.++.
T Consensus 585 dcWnanDhCRFq~msPee~d~elE~~gfia~ 615 (3015)
T KOG0943|consen 585 DCWNANDHCRFQLMSPEELDKELEKAGFIAE 615 (3015)
T ss_pred hhhccccceeeeecCHHHHhHHHhhhhhhhh
Confidence 4444444555 46788888 77888877664
No 85
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=84.88 E-value=1 Score=49.18 Aligned_cols=13 Identities=23% Similarity=0.289 Sum_probs=6.8
Q ss_pred eeeeCcccceeec
Q 001468 847 FIVPTSSCLVELI 859 (1073)
Q Consensus 847 ~l~pt~~clv~l~ 859 (1073)
.-.|..+|-..++
T Consensus 208 k~~PCPKCg~et~ 220 (314)
T PF06524_consen 208 KPIPCPKCGYETQ 220 (314)
T ss_pred CCCCCCCCCCccc
Confidence 3445566655444
No 86
>PF05285 SDA1: SDA1; InterPro: IPR007949 This domain consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus [].
Probab=84.02 E-value=0.89 Score=52.49 Aligned_cols=17 Identities=29% Similarity=0.698 Sum_probs=10.2
Q ss_pred EecccCCChhhHHHHhhcC
Q 001468 902 IDSIPSSSLDGIKEWLDTT 920 (1073)
Q Consensus 902 i~~I~~~~l~~ik~wl~~~ 920 (1073)
...|| =++.|..|....
T Consensus 65 ~~~i~--G~elL~~~~~~~ 81 (324)
T PF05285_consen 65 ADGIP--GAELLEEWKEEE 81 (324)
T ss_pred ccCCC--hHHHHHHHhhcc
Confidence 45555 455677776554
No 87
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=83.86 E-value=0.78 Score=58.47 Aligned_cols=38 Identities=24% Similarity=0.212 Sum_probs=20.2
Q ss_pred CceeeeeeCcccceeeccC-CcEEEEcCceeEEEEEeec
Q 001468 843 KASAFIVPTSSCLVELIET-PFVVITLSEIEIVNLERVG 880 (1073)
Q Consensus 843 ~~~~~l~pt~~clv~l~e~-P~~vi~l~eie~v~feRv~ 880 (1073)
|+..+-+|-.+|--++.-- ||-|..|.-+--..||-|-
T Consensus 1555 kna~f~amI~k~~qffQaL~~fAV~eLaiaAdaifePVR 1593 (3015)
T KOG0943|consen 1555 KNAFFPAMIGKCKQFFQALLPFAVEELAIAADAIFEPVR 1593 (3015)
T ss_pred cccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhhhhh
Confidence 3555666666675544433 4444455544445566553
No 88
>PF13104 DUF3956: Protein of unknown function (DUF3956)
Probab=83.50 E-value=1.3 Score=34.66 Aligned_cols=27 Identities=41% Similarity=0.705 Sum_probs=25.0
Q ss_pred cccceeeccCCcEEEEcCceeEEEEEe
Q 001468 852 SSCLVELIETPFVVITLSEIEIVNLER 878 (1073)
Q Consensus 852 ~~clv~l~e~P~~vi~l~eie~v~feR 878 (1073)
.+|.++.+-.|++|+++.-||++.+|=
T Consensus 2 ~sc~~fvngqp~lv~svagieiarlei 28 (45)
T PF13104_consen 2 ESCVVFVNGQPFLVVSVAGIEIARLEI 28 (45)
T ss_pred ceEEEEecCCeeEEEEEeeeEEEEEee
Confidence 479999999999999999999999984
No 89
>PRK12318 methionine aminopeptidase; Provisional
Probab=83.44 E-value=8.4 Score=43.86 Aligned_cols=101 Identities=17% Similarity=0.138 Sum_probs=66.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCccccccCC--cccc--ccccccccCCCcccCCCCcee
Q 001468 326 TVQSKAYEVLLKAHEAAISALKSGNKVSAAYKAASTVVEKDAPELAANLTR--NAGT--GIGLEFRESGLSLNAKNDRIL 401 (1073)
Q Consensus 326 ~eq~~~y~~llea~~a~i~~lkPGvt~~dV~~aa~~~l~~~Gp~l~~~~~h--~~GH--gIGle~~E~p~~l~~~~~~~L 401 (1073)
+.++++-..+..++.++++.++||++-.||...+..++.+.|. ...+.. ..++ .+....+..- .-...++++|
T Consensus 50 e~~R~Aa~I~~~a~~a~~~~irpG~tE~Eiaa~~~~~~~~~G~--~~~~~~~~~~~f~~~v~~g~n~~~-~H~~p~~~~l 126 (291)
T PRK12318 50 EKIRKACQVTARILDALCEAAKEGVTTNELDELSRELHKEYNA--IPAPLNYGSPPFPKTICTSLNEVI-CHGIPNDIPL 126 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHcCC--CccccccCCCCCCcceEeecccee-ecCCCCCCcc
Confidence 4556777778888999999999999999999988888887772 111100 0011 1111111110 0112356899
Q ss_pred cCCcEEEEeeccccccCCCCCCCCCeeeEEEEEEEEEe
Q 001468 402 KAGMVFNVSLGFQNLQTENKNPKTQKFSVLLADTVIVG 439 (1073)
Q Consensus 402 ~~GMVf~IEpG~~~l~~~~~~~~~~~~gvriEDTVlVt 439 (1073)
++|-++.++.|.. + ..|..-+.=|++|.
T Consensus 127 ~~GD~V~vD~g~~-~---------~GY~aDitRT~~vG 154 (291)
T PRK12318 127 KNGDIMNIDVSCI-V---------DGYYGDCSRMVMIG 154 (291)
T ss_pred CCCCEEEEEEeEE-E---------CcEEEEEEEEEECC
Confidence 9999999999975 2 33778888888883
No 90
>PF09026 CENP-B_dimeris: Centromere protein B dimerisation domain; InterPro: IPR015115 Centromere protein B (CENP-B) interacts with centromeric heterochromatin in chromosomes and binds to a specific subset of alphoid satellite DNA, called the CENP-B box. CENP-B may organise arrays of centromere satellite DNA into a higher order structure, which then directs centromere formation and kinetochore assembly in mammalian chromosomes. The CENP-B dimerisation domain is composed of two alpha-helices, which are folded into an antiparallel configuration. Dimerisation of CENP-B is mediated by this domain, in which monomers dimerise to form a symmetrical, antiparallel, four-helix bundle structure with a large hydrophobic patch in which 23 residues of one monomer form van der Waals contacts with the other monomer. This CENP-B dimer configuration may be suitable for capturing two distant CENP-B boxes during centromeric heterochromatin formation []. ; GO: 0003677 DNA binding, 0003682 chromatin binding, 0006355 regulation of transcription, DNA-dependent, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 1UFI_A.
Probab=82.46 E-value=0.43 Score=44.53 Aligned_cols=8 Identities=13% Similarity=-0.026 Sum_probs=0.8
Q ss_pred CCChHHHH
Q 001468 1016 GKTWEELE 1023 (1073)
Q Consensus 1016 g~~wdele 1023 (1073)
+.-|-++=
T Consensus 40 e~p~p~fg 47 (101)
T PF09026_consen 40 EVPVPEFG 47 (101)
T ss_dssp ------HH
T ss_pred cccchhHH
Confidence 44555543
No 91
>PRK07281 methionine aminopeptidase; Reviewed
Probab=81.88 E-value=11 Score=42.77 Aligned_cols=83 Identities=13% Similarity=0.121 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCccccccCCccc------cccccccccCCCcc-cCCCCc
Q 001468 327 VQSKAYEVLLKAHEAAISALKSGNKVSAAYKAASTVVEKDAPELAANLTRNAG------TGIGLEFRESGLSL-NAKNDR 399 (1073)
Q Consensus 327 eq~~~y~~llea~~a~i~~lkPGvt~~dV~~aa~~~l~~~Gp~l~~~~~h~~G------HgIGle~~E~p~~l-~~~~~~ 399 (1073)
.++++-+.+.+++.++.+.++||++-.+|...+...+.+.| ....+...-| +-++...+.. ++ ...+++
T Consensus 12 ~mr~A~~i~~~~~~~~~~~i~pG~te~ei~~~~~~~~~~~g--~~~~~~G~~~~~~~f~~~v~~G~n~~--~~H~~p~~~ 87 (286)
T PRK07281 12 AMDRAGDFLASIHIGLRDLIKPGVDMWEVEEYVRRRCKEEN--VLPLQIGVDGAMMDYPYATCCGLNDE--VAHAFPRHY 87 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHHcC--CcccccCCCCcccCCCcceEEecccc--ccCCCCCCc
Confidence 45566777778888889999999999999999999999887 2111100001 1111111111 11 123568
Q ss_pred eecCCcEEEEeecc
Q 001468 400 ILKAGMVFNVSLGF 413 (1073)
Q Consensus 400 ~L~~GMVf~IEpG~ 413 (1073)
+|++|.++.|..|+
T Consensus 88 ~l~~Gd~v~iD~g~ 101 (286)
T PRK07281 88 ILKEGDLLKVDMVL 101 (286)
T ss_pred CcCCCCEEEEEecc
Confidence 99999999999986
No 92
>cd01085 APP X-Prolyl Aminopeptidase 2. E.C. 3.4.11.9. Also known as X-Pro aminopeptidase, proline aminopeptidase, aminopeptidase P, and aminoacylproline aminopeptidase. Catalyses release of any N-terminal amino acid, including proline, that is linked with proline, even from a dipeptide or tripeptide.
Probab=81.26 E-value=8.2 Score=42.17 Aligned_cols=98 Identities=11% Similarity=0.043 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHhcCCccc-cccCCccccccc-cccccCCCcccCCCCceec
Q 001468 327 VQSKAYEVLLKAHEAAISALKSG--NKVSAAYKAASTVVEKDAPELA-ANLTRNAGTGIG-LEFRESGLSLNAKNDRILK 402 (1073)
Q Consensus 327 eq~~~y~~llea~~a~i~~lkPG--vt~~dV~~aa~~~l~~~Gp~l~-~~~~h~~GHgIG-le~~E~p~~l~~~~~~~L~ 402 (1073)
.+.+.-..+.++++.+.+.++|| ++-.||.+.+..++...|. +. ..|+..+.-|.. ...|-.| ++..+++|+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~i~~G~~~tE~eiaa~~~~~~~~~g~-~~~~~f~~~v~~g~n~~~~H~~p---~~~~~r~l~ 80 (224)
T cd01085 5 AHIRDGVALVEFLAWLEQEVPKGETITELSAADKLEEFRRQQKG-YVGLSFDTISGFGPNGAIVHYSP---TEESNRKIS 80 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCEeHHHHHHHHHHHHHHcCC-CcCCCcceEEEecCccCcCCCCc---CcccCcccC
Confidence 34445556668888889999999 9999999999988876541 21 123333332221 1222222 112378999
Q ss_pred CCcEEEEeeccccccCCCCCCCCCeeeEEEEEEEEE
Q 001468 403 AGMVFNVSLGFQNLQTENKNPKTQKFSVLLADTVIV 438 (1073)
Q Consensus 403 ~GMVf~IEpG~~~l~~~~~~~~~~~~gvriEDTVlV 438 (1073)
+|.++.+..|.. + ..|..-+.-|++|
T Consensus 81 ~GD~V~iD~g~~-~---------~gY~aD~~RT~~v 106 (224)
T cd01085 81 PDGLYLIDSGGQ-Y---------LDGTTDITRTVHL 106 (224)
T ss_pred CCCEEEEEeCcc-C---------CCcccccEEeecC
Confidence 999999999976 3 2366666677776
No 93
>PRK09795 aminopeptidase; Provisional
Probab=80.91 E-value=12 Score=43.84 Aligned_cols=96 Identities=16% Similarity=0.181 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCccccccCCcccccc-ccccccCCCcccCCCCceecCCc
Q 001468 327 VQSKAYEVLLKAHEAAISALKSGNKVSAAYKAASTVVEKDAPELAANLTRNAGTGI-GLEFRESGLSLNAKNDRILKAGM 405 (1073)
Q Consensus 327 eq~~~y~~llea~~a~i~~lkPGvt~~dV~~aa~~~l~~~Gp~l~~~~~h~~GHgI-Gle~~E~p~~l~~~~~~~L~~GM 405 (1073)
..+++.+.+..+..++++.++||++=.+|...+...+.+.|.+.. .|...++.|- +...| ...++++|++|.
T Consensus 135 ~~r~a~~i~~~~~~~~~~~i~~G~tE~e~~~~~~~~~~~~G~~~~-~f~~iv~sG~~~~~ph------~~~~~~~l~~gd 207 (361)
T PRK09795 135 KIRLACGIADRGAEHIRRFIQAGMSEREIAAELEWFMRQQGAEKA-SFDTIVASGWRGALPH------GKASDKIVAAGE 207 (361)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHCCCCcC-CCCeEEEEeccccccC------CCCCCceecCCC
Confidence 344555666677777788899999999999999999988884321 2333333321 11111 113568999999
Q ss_pred EEEEeeccccccCCCCCCCCCeeeEEEEEEEEEe
Q 001468 406 VFNVSLGFQNLQTENKNPKTQKFSVLLADTVIVG 439 (1073)
Q Consensus 406 Vf~IEpG~~~l~~~~~~~~~~~~gvriEDTVlVt 439 (1073)
++.+..|.. . +.|..-+.=|+.|.
T Consensus 208 ~v~~d~g~~-~---------~gY~sd~tRt~~~g 231 (361)
T PRK09795 208 FVTLDFGAL-Y---------QGYCSDMTRTLLVN 231 (361)
T ss_pred EEEEEeccc-c---------CCEeecceEEEEeC
Confidence 999999875 2 34777788888884
No 94
>cd01090 Creatinase Creatine amidinohydrolase. E.C.3.5.3.3. Hydrolyzes creatine to sarcosine and urea.
Probab=80.32 E-value=14 Score=40.30 Aligned_cols=99 Identities=10% Similarity=0.110 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCccccccCCccc----cccccccccCCCcccCCCCceec
Q 001468 327 VQSKAYEVLLKAHEAAISALKSGNKVSAAYKAASTVVEKDAPELAANLTRNAG----TGIGLEFRESGLSLNAKNDRILK 402 (1073)
Q Consensus 327 eq~~~y~~llea~~a~i~~lkPGvt~~dV~~aa~~~l~~~Gp~l~~~~~h~~G----HgIGle~~E~p~~l~~~~~~~L~ 402 (1073)
.++++-..+..++.++++.++||++-.||...+...+.+.|..-.. +....+ -+.|.... .| -...++++|+
T Consensus 3 ~ir~Aa~i~d~~~~~~~~~i~pG~tE~ei~a~~~~~~~~~ga~~~~-~~~~~~~~~~v~~G~~~~-~~--H~~~~~r~l~ 78 (228)
T cd01090 3 LIRHGARIADIGGAAVVEAIREGVPEYEVALAGTQAMVREIAKTFP-EVELMDTWTWFQSGINTD-GA--HNPVTNRKVQ 78 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCccCC-cccccCcceEEEeecccc-cc--CCCCCCcccC
Confidence 4677888889999999999999999999999998888887621000 101011 01222111 11 1223668999
Q ss_pred CCcEEEEeeccccccCCCCCCCCCeeeEEEEEEEEEe
Q 001468 403 AGMVFNVSLGFQNLQTENKNPKTQKFSVLLADTVIVG 439 (1073)
Q Consensus 403 ~GMVf~IEpG~~~l~~~~~~~~~~~~gvriEDTVlVt 439 (1073)
+|.++.+..+.. + ..|..-++=|+.|.
T Consensus 79 ~GD~v~~d~g~~-~---------~GY~ad~~RT~~vG 105 (228)
T cd01090 79 RGDILSLNCFPM-I---------AGYYTALERTLFLD 105 (228)
T ss_pred CCCEEEEEEeEE-E---------CCEeeeeEEEEECC
Confidence 999999998864 2 23666777788773
No 95
>PF05764 YL1: YL1 nuclear protein; InterPro: IPR008895 The proteins in this family are designated YL1 []. They have been shown to be DNA-binding and may be transcription factors [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=80.32 E-value=0.85 Score=50.41 Aligned_cols=7 Identities=29% Similarity=0.710 Sum_probs=3.7
Q ss_pred cCCCCCC
Q 001468 972 DQGYEPS 978 (1073)
Q Consensus 972 d~~~e~~ 978 (1073)
|++|+.+
T Consensus 41 D~ef~~~ 47 (240)
T PF05764_consen 41 DEEFESE 47 (240)
T ss_pred CccccCC
Confidence 5556543
No 96
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=79.56 E-value=0.68 Score=57.98 Aligned_cols=19 Identities=11% Similarity=0.258 Sum_probs=8.0
Q ss_pred EEecccCCChhhHHHHhhc
Q 001468 901 RIDSIPSSSLDGIKEWLDT 919 (1073)
Q Consensus 901 ~i~~I~~~~l~~ik~wl~~ 919 (1073)
.++-+|+.-+..|+.-+.+
T Consensus 29 ~~~l~PV~gy~el~~~~~~ 47 (622)
T PF02724_consen 29 QYSLVPVSGYSELERAYEE 47 (622)
T ss_pred CeeEEEeCCHHHHHHHHHH
Confidence 3344444444444444433
No 97
>KOG2775 consensus Metallopeptidase [General function prediction only]
Probab=78.93 E-value=7.4 Score=43.70 Aligned_cols=83 Identities=17% Similarity=0.228 Sum_probs=60.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----HHhcCCccccccCCcccccccccccc--CCCcccCCCCc
Q 001468 326 TVQSKAYEVLLKAHEAAISALKSGNKVSAAYKAASTV----VEKDAPELAANLTRNAGTGIGLEFRE--SGLSLNAKNDR 399 (1073)
Q Consensus 326 ~eq~~~y~~llea~~a~i~~lkPGvt~~dV~~aa~~~----l~~~Gp~l~~~~~h~~GHgIGle~~E--~p~~l~~~~~~ 399 (1073)
.+.++..++-+.+...+.+-+|||+++-+|.+...+. +.+.| +..++|+..|+...- ..+..++++..
T Consensus 86 ~d~rraAE~HRqvR~yv~s~ikPGmtm~ei~e~iEnttR~li~e~g------l~aGi~FPtG~SlN~cAAHyTpNaGd~t 159 (397)
T KOG2775|consen 86 QDLRRAAEAHRQVRKYVQSIIKPGMTMIEICETIENTTRKLILENG------LNAGIGFPTGCSLNHCAAHYTPNAGDKT 159 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHhcc------ccccccCCCcccccchhhhcCCCCCCce
Confidence 3456666667778888889999999999998877654 44445 334577777765421 22345788899
Q ss_pred eecCCcEEEEeeccc
Q 001468 400 ILKAGMVFNVSLGFQ 414 (1073)
Q Consensus 400 ~L~~GMVf~IEpG~~ 414 (1073)
+|+.+.|.-|.-|..
T Consensus 160 VLqydDV~KiDfGth 174 (397)
T KOG2775|consen 160 VLKYDDVMKIDFGTH 174 (397)
T ss_pred eeeecceEEEecccc
Confidence 999999999988876
No 98
>KOG2776 consensus Metallopeptidase [General function prediction only]
Probab=78.68 E-value=7.8 Score=44.62 Aligned_cols=101 Identities=20% Similarity=0.340 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCc-cc--cccCCcccccccccc-----ccCCCcccCCCCce
Q 001468 329 SKAYEVLLKAHEAAISALKSGNKVSAAYKAASTVVEKDAPE-LA--ANLTRNAGTGIGLEF-----RESGLSLNAKNDRI 400 (1073)
Q Consensus 329 ~~~y~~llea~~a~i~~lkPGvt~~dV~~aa~~~l~~~Gp~-l~--~~~~h~~GHgIGle~-----~E~p~~l~~~~~~~ 400 (1073)
+-+=+.+-.+...+++.++||++..++.....++|.+.-.. |. ..|-+++.+.+-|.+ |=+|+ -.+.+.+
T Consensus 25 k~AgeI~n~~lk~V~~~~~~gasv~eiC~~GD~~i~E~t~kiYK~eK~~~KGIAfPT~Isvnncv~h~sPl--ksd~~~~ 102 (398)
T KOG2776|consen 25 KMAGEIVNKVLKSVVELCQPGASVREICEKGDSLILEETGKIYKKEKDFEKGIAFPTSISVNNCVCHFSPL--KSDADYT 102 (398)
T ss_pred hhHHHHHHHHHHHHHHHhcCCchHHHHHHhhhHHHHHHHHHHHhhhhhhhccccccceecccceeeccCcC--CCCCccc
Confidence 34445666778888899999999999999988877664211 11 234445555544433 33442 2334789
Q ss_pred ecCCcEEEEeeccccccCCCCCCCCCeeeEEEEEEEEEeCC
Q 001468 401 LKAGMVFNVSLGFQNLQTENKNPKTQKFSVLLADTVIVGEK 441 (1073)
Q Consensus 401 L~~GMVf~IEpG~~~l~~~~~~~~~~~~gvriEDTVlVte~ 441 (1073)
|++|.|+-|..|+. + .+|...+.+|++|++.
T Consensus 103 Lk~GDvVKIdLG~H-i---------DGfiA~vaHT~VV~~~ 133 (398)
T KOG2776|consen 103 LKEGDVVKIDLGVH-I---------DGFIALVAHTIVVGPA 133 (398)
T ss_pred ccCCCEEEEEeeee-e---------ccceeeeeeeEEeccC
Confidence 99999999999998 4 2388899999999753
No 99
>PRK10879 proline aminopeptidase P II; Provisional
Probab=75.69 E-value=20 Score=43.28 Aligned_cols=95 Identities=15% Similarity=0.170 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCccccccCCccccccc-cccccCCCcccCCCCceecCCc
Q 001468 327 VQSKAYEVLLKAHEAAISALKSGNKVSAAYKAASTVVEKDAPELAANLTRNAGTGIG-LEFRESGLSLNAKNDRILKAGM 405 (1073)
Q Consensus 327 eq~~~y~~llea~~a~i~~lkPGvt~~dV~~aa~~~l~~~Gp~l~~~~~h~~GHgIG-le~~E~p~~l~~~~~~~L~~GM 405 (1073)
.++++.+.+..++.++++.++||++=.+|...+...+.+.|... ..|+..++.|.- ...|- ..++.+|++|.
T Consensus 181 ~~r~A~~i~~~a~~~~~~~~~pG~tE~ei~a~~~~~~~~~G~~~-~~~~~iv~~G~na~~~H~------~~~~~~l~~GD 253 (438)
T PRK10879 181 VLRRAGEISALAHTRAMEKCRPGMFEYQLEGEIHHEFNRHGARY-PSYNTIVGSGENGCILHY------TENESEMRDGD 253 (438)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHCCCCC-CCCCcEEEEcCccccccC------CCCccccCCCC
Confidence 45566677778888999999999999999999988888888322 122222322221 11121 23567899999
Q ss_pred EEEEeeccccccCCCCCCCCCeeeEEEEEEEEE
Q 001468 406 VFNVSLGFQNLQTENKNPKTQKFSVLLADTVIV 438 (1073)
Q Consensus 406 Vf~IEpG~~~l~~~~~~~~~~~~gvriEDTVlV 438 (1073)
++.+..|.. . ..|..-+.=|+.|
T Consensus 254 lVliD~G~~-~---------~GY~sDitRT~~v 276 (438)
T PRK10879 254 LVLIDAGCE-Y---------KGYAGDITRTFPV 276 (438)
T ss_pred EEEEEeCeE-E---------CCEEEEeEEEEEE
Confidence 999999976 2 3377788888877
No 100
>PRK14576 putative endopeptidase; Provisional
Probab=73.49 E-value=23 Score=42.26 Aligned_cols=96 Identities=16% Similarity=0.152 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCccccccCCccccccccccccCCCcccCCCCceecCCcE
Q 001468 327 VQSKAYEVLLKAHEAAISALKSGNKVSAAYKAASTVVEKDAPELAANLTRNAGTGIGLEFRESGLSLNAKNDRILKAGMV 406 (1073)
Q Consensus 327 eq~~~y~~llea~~a~i~~lkPGvt~~dV~~aa~~~l~~~Gp~l~~~~~h~~GHgIGle~~E~p~~l~~~~~~~L~~GMV 406 (1073)
..+++-+.+..+..++++.++||++=.||...+...+.+.|......+ ..++.|--. .|. . ..++++|++|.+
T Consensus 185 ~~r~A~~i~~~~~~~~~~~i~pG~tE~elaa~~~~~~~~~g~~~~~~~-~~v~~G~~~----~~h-~-~~~~~~l~~Gd~ 257 (405)
T PRK14576 185 HLRKSAEITEYGIASAAKKIRVGCTAAELTAAFKAAVMSFPETNFSRF-NLISVGDNF----SPK-I-IADTTPAKVGDL 257 (405)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHcCCCcCCCC-CEEEECCcc----cCC-C-CCCCcccCCCCE
Confidence 455666777788888889999999999999999888877762111111 112222111 121 1 124678999999
Q ss_pred EEEeeccccccCCCCCCCCCeeeEEEEEEEEEe
Q 001468 407 FNVSLGFQNLQTENKNPKTQKFSVLLADTVIVG 439 (1073)
Q Consensus 407 f~IEpG~~~l~~~~~~~~~~~~gvriEDTVlVt 439 (1073)
+.+..|.. . ..|..-+.=|+++.
T Consensus 258 v~~d~g~~-~---------~GY~sd~tRT~~~G 280 (405)
T PRK14576 258 IKFDCGID-V---------AGYGADLARTFVLG 280 (405)
T ss_pred EEEEecee-E---------CCEEeeeeEEEECC
Confidence 99999875 2 33777777787764
No 101
>PHA02664 hypothetical protein; Provisional
Probab=71.75 E-value=5.4 Score=44.75 Aligned_cols=28 Identities=32% Similarity=0.414 Sum_probs=17.2
Q ss_pred cccceeeeeeeeee------ccccC--CCeeEEEEE
Q 001468 574 SMVPFHVATVKSVS------SQQDT--NRSCYIRII 601 (1073)
Q Consensus 574 ~~vPfHi~tiKn~s------~~~e~--~~~~~lrin 601 (1073)
|+||=|+-.-+++| -++.- +..-|+|+.
T Consensus 179 yavpghvvlarsasmlcdc~psdpqrrnvifymrls 214 (534)
T PHA02664 179 YAVPGHVVLARSASMLCDCSPSDPQRRNVIFYMRLS 214 (534)
T ss_pred cccCceEEEecchhhhhcCCCCCccccceEEEEEec
Confidence 68899986666555 34421 334588874
No 102
>PF03115 Astro_capsid: Astrovirus capsid protein precursor; InterPro: IPR004337 The astrovirus genome is apparently organised with nonstructural proteins encoded at the 5' end and structural proteins at the 3' end []. Proteins in this family are encoded by astrovirus ORF2, one of the three astrovirus ORFs (1a, 1b, 2). The proteins contain a viral RNA-dependent RNA polymerase motif []. The 87kDa precursor polyprotein undergoes an intracellular cleavage to form a 79kDa protein. Subsequently, extracellular trypsin cleavage yields the three proteins forming the infectious virion [].; PDB: 3QSQ_A 3TS3_D.
Probab=70.94 E-value=1.3 Score=56.13 Aligned_cols=8 Identities=0% Similarity=0.314 Sum_probs=0.0
Q ss_pred eEEEeece
Q 001468 300 VIICAVGS 307 (1073)
Q Consensus 300 vI~vdlG~ 307 (1073)
+.+|.+-+
T Consensus 244 LflvE~~~ 251 (787)
T PF03115_consen 244 LFLVELRA 251 (787)
T ss_dssp --------
T ss_pred cEEEEEEE
Confidence 33444333
No 103
>PRK15173 peptidase; Provisional
Probab=70.91 E-value=36 Score=39.31 Aligned_cols=96 Identities=16% Similarity=0.177 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCccccccCCccccccccccccCCCcccCCCCceecCCcE
Q 001468 327 VQSKAYEVLLKAHEAAISALKSGNKVSAAYKAASTVVEKDAPELAANLTRNAGTGIGLEFRESGLSLNAKNDRILKAGMV 406 (1073)
Q Consensus 327 eq~~~y~~llea~~a~i~~lkPGvt~~dV~~aa~~~l~~~Gp~l~~~~~h~~GHgIGle~~E~p~~l~~~~~~~L~~GMV 406 (1073)
.++++-..+..+..++++.++||++-.+|..++...+...|..-..++ +.+. .|-.. .|. ...+++.|++|.+
T Consensus 103 ~mr~A~~i~~~~~~~~~~~i~~G~tE~el~a~~~~~~~~~g~~~~~~~-~~i~--~G~~~--~~h--~~~~~~~l~~Gd~ 175 (323)
T PRK15173 103 RLRKSAEITEYGITEASKLIRVGCTSAELTAAYKAAVMSKSETHFSRF-HLIS--VGADF--SPK--LIPSNTKACSGDL 175 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHcCCCCCCCC-cEEE--ECCCC--ccC--CCCCCCccCCCCE
Confidence 455666677778888888999999999999988776666551100111 1111 12111 121 1124678999999
Q ss_pred EEEeeccccccCCCCCCCCCeeeEEEEEEEEEe
Q 001468 407 FNVSLGFQNLQTENKNPKTQKFSVLLADTVIVG 439 (1073)
Q Consensus 407 f~IEpG~~~l~~~~~~~~~~~~gvriEDTVlVt 439 (1073)
+.+..|.. + ..|..-+.=|+.|.
T Consensus 176 V~iD~g~~-~---------~GY~aDitRT~~vG 198 (323)
T PRK15173 176 IKFDCGVD-V---------DGYGADIARTFVVG 198 (323)
T ss_pred EEEEeCcc-C---------CCEeeeeEEEEEcC
Confidence 99998874 2 34788888899884
No 104
>COG5165 POB3 Nucleosome-binding factor SPN, POB3 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]
Probab=70.43 E-value=3.7 Score=46.88 Aligned_cols=133 Identities=21% Similarity=0.278 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcccCCCceeeccCcccceeecccC--------ceeeeeeCcccceeec
Q 001468 788 VEEEQRERARKNKINMDFQNFVNRVNDLWGQPQFKAFDLEFDQPLRELGFHGVPHK--------ASAFIVPTSSCLVELI 859 (1073)
Q Consensus 788 ~~~eq~e~~~~~~ln~~f~~f~~~v~~~~~~~~~~~~~~~f~~p~~~l~f~g~~~~--------~~~~l~pt~~clv~l~ 859 (1073)
+++|-+|..++.||+++|...+..|-. . .|.|+..| .+..-+...+|.+++.
T Consensus 300 vede~~~e~y~dklK~~Yd~~~~ev~s------~--------------v~~gLt~rkvv~p~ef~S~~g~~av~Cs~KAn 359 (508)
T COG5165 300 VEDEDYEENYKDKLKGEYDGLLSEVFS------E--------------VMEGLTVRKVVRPSEFESRDGMRAVRCSMKAN 359 (508)
T ss_pred cchhhhhhhHHHhhhhhccchHHHHHH------H--------------HHHhhcceeeecchhhcccCCceeeeeeeecc
Confidence 678899999999999999999998844 1 35555554 2445677888999999
Q ss_pred cCCcEEEEcCceeEEEEEeecCCCcceeEEEEEecCCCCeEEEecccCCChhhHHHHhhcCCce-eeecccCCChhhhhh
Q 001468 860 ETPFVVITLSEIEIVNLERVGLGQKNFDMTIVFKDFKRDVLRIDSIPSSSLDGIKEWLDTTDLK-YYESRLNLNWRPILK 938 (1073)
Q Consensus 860 e~P~~vi~l~eie~v~feRv~~~~k~FD~~~v~kd~~~~~~~i~~I~~~~l~~ik~wl~~~~i~-~~e~~~nlnW~~i~k 938 (1073)
|+.-. +|++-=+. +=.-...+-.=|+.. +.|+-|-+++... ...++. +-.++-+..+.+|-|
T Consensus 360 EGqLY--pLD~~flF-lpKptl~l~~sdis~---------V~~SRig~ss~~a-----rTFDlt~~lrs~~sytF~nisk 422 (508)
T COG5165 360 EGQLY--PLDDCFLF-LPKPTLRLDLSDISL---------VEFSRIGLSSMQA-----RTFDLTLFLRSPGSYTFNNISK 422 (508)
T ss_pred CceEe--eccceEEe-ccCceEEeecccceE---------EEEeecccchhhh-----ceeeEEEEEecCCceeecCcCH
Confidence 87422 22221000 000000011112222 2344444433221 112222 346667788888888
Q ss_pred hhccCchhhhhcCCccccc
Q 001468 939 TITDDPEKFIEDGGWEFLN 957 (1073)
Q Consensus 939 ~i~~d~~~f~~~ggw~fl~ 957 (1073)
..+.=-++||...|-..-+
T Consensus 423 ~Eq~aLeqfl~sK~ik~~n 441 (508)
T COG5165 423 DEQGALEQFLHSKGIKARN 441 (508)
T ss_pred HHHHHHHHHHhccCceecc
Confidence 8888788999888765443
No 105
>KOG2773 consensus Apoptosis antagonizing transcription factor/protein transport protein [Transcription; Intracellular trafficking, secretion, and vesicular transport]
Probab=68.27 E-value=3.3 Score=48.82 Aligned_cols=11 Identities=9% Similarity=0.148 Sum_probs=5.0
Q ss_pred CChHHHHHHHh
Q 001468 1017 KTWEELEREAS 1027 (1073)
Q Consensus 1017 ~~wdele~~a~ 1027 (1073)
+-||++..-+.
T Consensus 139 e~eDd~~~s~~ 149 (483)
T KOG2773|consen 139 EGEDDLQDSQI 149 (483)
T ss_pred cccchhhhhcc
Confidence 34555544433
No 106
>COG0006 PepP Xaa-Pro aminopeptidase [Amino acid transport and metabolism]
Probab=67.76 E-value=25 Score=41.44 Aligned_cols=98 Identities=20% Similarity=0.200 Sum_probs=68.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCccccccCCccccccccccccCCCcccCCCCceecCCc
Q 001468 326 TVQSKAYEVLLKAHEAAISALKSGNKVSAAYKAASTVVEKDAPELAANLTRNAGTGIGLEFRESGLSLNAKNDRILKAGM 405 (1073)
Q Consensus 326 ~eq~~~y~~llea~~a~i~~lkPGvt~~dV~~aa~~~l~~~Gp~l~~~~~h~~GHgIGle~~E~p~~l~~~~~~~L~~GM 405 (1073)
+..+++.+....|+.++++.++||++-.+|.+.....+.+.|.+.. .|..-++.| .+-..+ -...++.++++|-
T Consensus 161 ~~ir~A~~i~~~a~~~~~~~~~~g~tE~ev~a~l~~~~~~~G~~~~-sf~~iv~~G----~n~a~p-H~~~~~~~~~~gd 234 (384)
T COG0006 161 AKIRKAAEIADAALEAALEAIRPGMTEAEIAAELEYALRKGGAEGP-SFDTIVASG----ENAALP-HYTPSDRKLRDGD 234 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCCcc-CcCcEEecc----ccccCc-CCCCCcccccCCC
Confidence 4578888999999999999999999999999999999999983221 222222222 111111 1123567779999
Q ss_pred EEEEeeccccccCCCCCCCCCeeeEEEEEEEEEe
Q 001468 406 VFNVSLGFQNLQTENKNPKTQKFSVLLADTVIVG 439 (1073)
Q Consensus 406 Vf~IEpG~~~l~~~~~~~~~~~~gvriEDTVlVt 439 (1073)
.+.|..|.. . ..|..-+.=|+.|.
T Consensus 235 ~vliD~G~~-~---------~gY~sDiTRT~~~G 258 (384)
T COG0006 235 LVLIDLGGV-Y---------NGYCSDITRTFPIG 258 (384)
T ss_pred EEEEEeeeE-E---------CCccccceeEEecC
Confidence 999999886 2 22666667777764
No 107
>COG5129 MAK16 Nuclear protein with HMG-like acidic region [General function prediction only]
Probab=67.58 E-value=2.7 Score=44.90 Aligned_cols=40 Identities=10% Similarity=0.072 Sum_probs=17.9
Q ss_pred ceeecccCceeeeeeCcccceeeccCCcEEEEcCceeEEEE
Q 001468 836 GFHGVPHKASAFIVPTSSCLVELIETPFVVITLSEIEIVNL 876 (1073)
Q Consensus 836 ~f~g~~~~~~~~l~pt~~clv~l~e~P~~vi~l~eie~v~f 876 (1073)
...|+..|.+|.|--..-.-|... .--+++-+-.+|-|||
T Consensus 32 NVTGLC~RqSCPLANSrYATVr~d-ngkLyLymKtpERaH~ 71 (303)
T COG5129 32 NVTGLCDRQSCPLANSRYATVRAD-NGKLYLYMKTPERAHV 71 (303)
T ss_pred ccceeeccccCcCccCcceEEEec-CCEEEEEecChhhccC
Confidence 345555555555444333333333 2334444445555554
No 108
>PRK14575 putative peptidase; Provisional
Probab=67.16 E-value=38 Score=40.45 Aligned_cols=96 Identities=16% Similarity=0.163 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCccccccCCccccccccccccCCCcccCCCCceecCCcE
Q 001468 327 VQSKAYEVLLKAHEAAISALKSGNKVSAAYKAASTVVEKDAPELAANLTRNAGTGIGLEFRESGLSLNAKNDRILKAGMV 406 (1073)
Q Consensus 327 eq~~~y~~llea~~a~i~~lkPGvt~~dV~~aa~~~l~~~Gp~l~~~~~h~~GHgIGle~~E~p~~l~~~~~~~L~~GMV 406 (1073)
..+++-+.+.+++.++++.++||++=.+|...+...+...|..-...+ +.++ .|-. ..|. . ..++++|++|.+
T Consensus 186 ~~r~A~~i~~~a~~~~~~~i~pG~tE~elaa~~~~~~~~~g~~~~~~~-~~v~--~G~~--~~~h-~-~~~~~~l~~Gd~ 258 (406)
T PRK14575 186 RLRKSAEITEYGITEASKLIRVGCTSAELTAAYKAAVMSKSETHFSRF-HLIS--VGAD--FSPK-L-IPSNTKACSGDL 258 (406)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHcCCCcCCcC-ceEE--ECCC--cccC-C-CCCCCcCCCCCE
Confidence 455666777788888899999999999999998777766652100111 1121 1221 1221 1 125678999999
Q ss_pred EEEeeccccccCCCCCCCCCeeeEEEEEEEEEe
Q 001468 407 FNVSLGFQNLQTENKNPKTQKFSVLLADTVIVG 439 (1073)
Q Consensus 407 f~IEpG~~~l~~~~~~~~~~~~gvriEDTVlVt 439 (1073)
+.++.|.. . ..|..-+.=|+.|.
T Consensus 259 v~iD~g~~-~---------~GY~sditRT~~vG 281 (406)
T PRK14575 259 IKFDCGVD-V---------DGYGADIARTFVVG 281 (406)
T ss_pred EEEEeceE-E---------CCEeeeeEEEEECC
Confidence 99999874 2 34777888888883
No 109
>PHA02664 hypothetical protein; Provisional
Probab=67.10 E-value=4.4 Score=45.43 Aligned_cols=18 Identities=22% Similarity=0.141 Sum_probs=7.9
Q ss_pred eeeEEEEE-EEEEeCCCce
Q 001468 427 KFSVLLAD-TVIVGEKVPD 444 (1073)
Q Consensus 427 ~~gvriED-TVlVte~G~e 444 (1073)
.+-++++- +|.||--|+|
T Consensus 208 ifymrlsg~mvrvtvpgae 226 (534)
T PHA02664 208 IFYMRLSGTMVRVTVPGAE 226 (534)
T ss_pred EEEEEecCcEEEEEecCce
Confidence 34444433 3344555544
No 110
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=65.87 E-value=4.2 Score=48.82 Aligned_cols=14 Identities=29% Similarity=0.434 Sum_probs=5.6
Q ss_pred eccCcccceeeccc
Q 001468 829 DQPLRELGFHGVPH 842 (1073)
Q Consensus 829 ~~p~~~l~f~g~~~ 842 (1073)
+.|-..|.+.-+|+
T Consensus 114 ~~~k~rLIIRNLPf 127 (678)
T KOG0127|consen 114 DLPKWRLIIRNLPF 127 (678)
T ss_pred cCccceEEeecCCc
Confidence 33333344444443
No 111
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=64.81 E-value=4.1 Score=48.90 Aligned_cols=16 Identities=6% Similarity=0.005 Sum_probs=9.1
Q ss_pred cccceeeeccCCCccE
Q 001468 726 GNIKHAFFQPAEREMI 741 (1073)
Q Consensus 726 ~nIk~~ffqp~~~e~~ 741 (1073)
++|...|=||.+...+
T Consensus 97 ~~veK~~~q~~~~k~~ 112 (678)
T KOG0127|consen 97 KAVEKPIEQKRPTKAK 112 (678)
T ss_pred hhhhcccccCCcchhh
Confidence 4556666666655443
No 112
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=64.48 E-value=6.4 Score=50.42 Aligned_cols=31 Identities=10% Similarity=0.234 Sum_probs=21.5
Q ss_pred ChhhHHHHhhcCCceeeecccCCChhhhhhh
Q 001468 909 SLDGIKEWLDTTDLKYYESRLNLNWRPILKT 939 (1073)
Q Consensus 909 ~l~~ik~wl~~~~i~~~e~~~nlnW~~i~k~ 939 (1073)
..+.+..|....-.+.+|......|..+=..
T Consensus 337 ~~~~~~~F~~~~~~~l~E~~n~~~w~~~k~~ 367 (794)
T PF08553_consen 337 DQEDYERFQEKFMKCLWENLNKMKWSKIKED 367 (794)
T ss_pred CHHHHHHHHHHHHHHHHHHhhcCCcccCcHH
Confidence 4556666666666668898888999765333
No 113
>PF03344 Daxx: Daxx Family; InterPro: IPR005012 Daxx is a ubiquitously expressed protein that functions, in part, as a transcriptional co-repressor through its interaction with a growing number of nuclear, DNA-associated proteins. Human Daxx contains four structural domains commonly found in transcriptional regulatory proteins: two predicted paired amphipathic helices, an acid-rich domain and a Ser/Pro/Thr (SPT)-rich domain. The post-translational modification status of the SPT-domain of hDaxx regulates its association with transcription factors such as Pax3 and ETS-1, effectively bringing hDaxx to sites of active transcription. Through its presence at the site of active transcription, hDaxx could then be able to associate with acetylated histones present in the nucleosomes and Dek that is associated with chromatin. Through its association with the SPT-domain of hDaxx, histone deacetylases may also be brought to the site of active transcription. As a consequence, nucleosomes in the vicinity of the site of active transcription will have the histone tails deacetylated, allowing the deactylated tail to bind to DNA, thereby leading to an inactive chromatin structure and transcriptional repression []. The Daxx protein (also known as the Fas-binding protein) is thought to play a role in apoptosis as a component of nuclear promyelocytic leukemia protein (PML) oncogenic domains (PODS). Daxx associates with PODs through a direct interaction with PML, a critical component of PODs. The interaction is a dynamic, cell cycle regulated event and is dependent on the post-translational modification of PML by the small ubiquitin-related modifier SUMO-1. ; PDB: 2KZS_A 2KZU_A.
Probab=64.06 E-value=2.2 Score=53.92 Aligned_cols=22 Identities=23% Similarity=0.107 Sum_probs=0.0
Q ss_pred eeeeeeeccccCCCeeEEEEEeec
Q 001468 581 ATVKSVSSQQDTNRSCYIRIIFNV 604 (1073)
Q Consensus 581 ~tiKn~s~~~e~~~~~~lrinF~~ 604 (1073)
+-+|+.+... |...--||.|..
T Consensus 251 C~l~~~~~~~--~R~~~~~i~~~~ 272 (713)
T PF03344_consen 251 CELTGESSLT--GRVIEQPIHFRG 272 (713)
T ss_dssp ------------------------
T ss_pred cccccccccc--cccccccccccc
Confidence 4455555433 344445555543
No 114
>PF11705 RNA_pol_3_Rpc31: DNA-directed RNA polymerase III subunit Rpc31; InterPro: IPR024661 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. RNA polymerase III contains seventeen subunits in yeasts and in human cells. Twelve of these are akin to RNA polymerase I or II and the other five are RNA polymerase III-specific, and form the functionally distinct groups: (i) Rpc31-Rpc34-Rpc82, and (ii) Rpc37-Rpc53. Rpc31, Rpc34 and Rpc82 form a cluster of enzyme-specific subunits that contribute to transcription initiation in Saccharomyces cerevisiae and Homo sapiens. There is evidence that these subunits are anchored at or near the N-terminal Zn-fold of Rpc1, itself prolonged by a highly conserved but RNA polymerase III-specific domain []. This entry represents the Rpc31 subunit.
Probab=61.81 E-value=8.9 Score=42.20 Aligned_cols=11 Identities=9% Similarity=0.060 Sum_probs=5.1
Q ss_pred HHHHHHHHHHh
Q 001468 803 MDFQNFVNRVN 813 (1073)
Q Consensus 803 ~~f~~f~~~v~ 813 (1073)
..|..|...+.
T Consensus 56 ~~~~~lr~~~~ 66 (233)
T PF11705_consen 56 ALKRELRERMR 66 (233)
T ss_pred HHHHHHHHHHH
Confidence 33444555553
No 115
>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms]
Probab=61.23 E-value=5.8 Score=49.26 Aligned_cols=9 Identities=11% Similarity=-0.215 Sum_probs=3.6
Q ss_pred eEeecCCCc
Q 001468 771 VVQTLGGGK 779 (1073)
Q Consensus 771 ~~~~~~~~r 779 (1073)
.+.++++.|
T Consensus 108 ~~~e~s~rk 116 (822)
T KOG2141|consen 108 RSVEESKRK 116 (822)
T ss_pred HHHHhcccc
Confidence 334444433
No 116
>PF09073 BUD22: BUD22; InterPro: IPR015158 BUD22 has been shown in yeast to be a nuclear protein involved in bud-site selection. It plays a role in positioning the proximal bud pole signal [].
Probab=60.11 E-value=5.7 Score=47.77 Aligned_cols=12 Identities=17% Similarity=-0.108 Sum_probs=5.3
Q ss_pred CCcEEEEcCcee
Q 001468 861 TPFVVITLSEIE 872 (1073)
Q Consensus 861 ~P~~vi~l~eie 872 (1073)
.|.+.+.-+=++
T Consensus 81 ~k~~~~s~~~~~ 92 (432)
T PF09073_consen 81 TKRIAESPDFPE 92 (432)
T ss_pred CCccccChhHHH
Confidence 445444444333
No 117
>PF04050 Upf2: Up-frameshift suppressor 2 ; InterPro: IPR007193 This entry represents Up-frameshift suppressor 2 (also known as Nonsense-mediated mRNA decay protein 2). Transcripts harbouring premature signals for translation termination are recognised and rapidly degraded by eukaryotic cells through a pathway known as nonsense-mediated mRNA decay. In Saccharomyces cerevisiae, three trans-acting factors (Upf1 to Upf3) are required for nonsense-mediated mRNA decay [].; PDB: 2WJV_D.
Probab=59.98 E-value=3.3 Score=43.34 Aligned_cols=7 Identities=57% Similarity=0.852 Sum_probs=3.3
Q ss_pred HHHHHHH
Q 001468 1020 EELEREA 1026 (1073)
Q Consensus 1020 dele~~a 1026 (1073)
++++++.
T Consensus 63 ~dFeref 69 (170)
T PF04050_consen 63 EDFEREF 69 (170)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3444444
No 118
>PF08567 TFIIH_BTF_p62_N: TFIIH p62 subunit, N-terminal domain; InterPro: IPR013876 The N-terminal region of the TFIIH basal transcription factor complex p62 subunit (BTF2-p62) forms an interaction with the 3' endonuclease XPG, which is essential for activity. The 3' endonuclease XPG is a major component of the nucleotide excision repair machinery. The structure of the N-terminal region reveals that it adopts a pleckstrin homology (PH) fold [, ]. ; PDB: 1Y5O_A 2LOX_A 2GS0_A 2L2I_A 2K2U_A 1PFJ_A 2RNR_B.
Probab=59.95 E-value=21 Score=32.75 Aligned_cols=62 Identities=16% Similarity=0.268 Sum_probs=43.7
Q ss_pred cccccceEEEEecc--eeeecCCCCc--eeeeeccccceeeeccCCCccEEEEEEEcccceeeCceecc
Q 001468 696 GRKLTGSLEAHTNG--FRYSTSRPDE--RVDVMYGNIKHAFFQPAEREMITLLHFHLHNHIMVGNKKTK 760 (1073)
Q Consensus 696 ~kr~~G~le~h~ng--~r~~~~~~~~--~~dily~nIk~~ffqp~~~e~~v~~h~~L~~pi~~Gkkk~~ 760 (1073)
.||..|+|.+.... +.++....+. .+.|.|.+|+.++-=|.- .--|+|-+-++++- |...+.
T Consensus 9 yKK~~G~L~l~~d~~~~~W~~~~~~~~~~v~i~~~~I~~lq~Sp~~-s~Kv~Lki~~~~~~--~~~~~~ 74 (79)
T PF08567_consen 9 YKKKDGTLTLTEDRKPLEWTPKASDGPSTVSIPLNDIKNLQQSPEG-SPKVMLKIVLKDDS--SEESKT 74 (79)
T ss_dssp ETTEEEEEEEETTCSSEEEEECCSSSSSEEEEETTTEEEEEE--TT-SSTEEEEEEETTSC-----CCC
T ss_pred EEcCCcEEEEecCCceEEEeecCCCCCceEEEEHHHhhhhccCCCC-CcceEEEEEEecCC--cccceE
Confidence 48999999999999 9998743333 399999999998766655 46677777777766 444333
No 119
>KOG2393 consensus Transcription initiation factor IIF, large subunit (RAP74) [Transcription]
Probab=59.74 E-value=15 Score=44.33 Aligned_cols=34 Identities=18% Similarity=0.406 Sum_probs=25.0
Q ss_pred ChhhHHHHhhcCCceeeecccCCC-hhhhhhhhccCchhhhh
Q 001468 909 SLDGIKEWLDTTDLKYYESRLNLN-WRPILKTITDDPEKFIE 949 (1073)
Q Consensus 909 ~l~~ik~wl~~~~i~~~e~~~nln-W~~i~k~i~~d~~~f~~ 949 (1073)
.++-..+|+.... --+| |--+|+..+.+++.|++
T Consensus 175 ~~EEaee~~~~r~-------k~~Nt~~s~m~a~~~~~~~~~e 209 (555)
T KOG2393|consen 175 TAEEAEEWFMERF-------KVMNTWFSLMEAGNSDSYVLLE 209 (555)
T ss_pred cHHHHHHHHHHhh-------hhHHHHHHHHHHhccccchhhc
Confidence 4667778876552 2346 99999999999887764
No 120
>KOG1980 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.17 E-value=6.3 Score=48.31 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001468 498 KEELRRQHQAELARQKNEETARR 520 (1073)
Q Consensus 498 ~e~~r~~~Q~eL~~~~~~e~~~r 520 (1073)
.-..||..-++|..+|.++.+++
T Consensus 48 sk~~rrn~akqlr~qk~~~v~e~ 70 (754)
T KOG1980|consen 48 SKLQRRNQAKQLRKQKREDVLEN 70 (754)
T ss_pred hHHHHHhHHHHHHHhHHHHHHHh
Confidence 34455666678888888888776
No 121
>KOG1834 consensus Calsyntenin [Extracellular structures]
Probab=57.33 E-value=5.4 Score=48.73 Aligned_cols=23 Identities=35% Similarity=0.598 Sum_probs=14.5
Q ss_pred CCChhhhhhhhccCchhhhhcCC
Q 001468 930 NLNWRPILKTITDDPEKFIEDGG 952 (1073)
Q Consensus 930 nlnW~~i~k~i~~d~~~f~~~gg 952 (1073)
-+.|-.=-=||.-+|..=+++||
T Consensus 869 ~m~WDDSaltItVNPme~~e~~g 891 (952)
T KOG1834|consen 869 EMDWDDSALTITVNPMEDYEKGG 891 (952)
T ss_pred CCCcccccceEEecchHhcccCC
Confidence 34555555567777777777764
No 122
>KOG0699 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=57.19 E-value=7.2 Score=44.75 Aligned_cols=20 Identities=15% Similarity=0.388 Sum_probs=11.3
Q ss_pred Cccccceeeeeeeeeecccc
Q 001468 572 YGSMVPFHVATVKSVSSQQD 591 (1073)
Q Consensus 572 ~G~~vPfHi~tiKn~s~~~e 591 (1073)
+|..+|+-.+|..---.++|
T Consensus 18 ~g~lL~yg~s~MQGWRvsqE 37 (542)
T KOG0699|consen 18 SGNLLSYGCSTMQGWRVSQE 37 (542)
T ss_pred cCccchhchhhhhccccchh
Confidence 35556666666665555554
No 123
>KOG0262 consensus RNA polymerase I, large subunit [Transcription]
Probab=56.90 E-value=9.9 Score=49.79 Aligned_cols=31 Identities=19% Similarity=0.213 Sum_probs=17.9
Q ss_pred CCcceeEEEEEecCC-----CCeEEEecccCCChhh
Q 001468 882 GQKNFDMTIVFKDFK-----RDVLRIDSIPSSSLDG 912 (1073)
Q Consensus 882 ~~k~FD~~~v~kd~~-----~~~~~i~~I~~~~l~~ 912 (1073)
-+++|++.-.+--+. .-.++|+-.|++++..
T Consensus 1237 vlk~v~vte~~t~~~~~~~~~y~lr~~~~~~~~y~~ 1272 (1640)
T KOG0262|consen 1237 VLKKVGVTEKITMVENQSCKKYKLRFDLLPREEYQE 1272 (1640)
T ss_pred HHhheeeeEEEEeeccccceEEEEEEeecCHHHhhh
Confidence 456666655542222 2256778788877665
No 124
>KOG2051 consensus Nonsense-mediated mRNA decay 2 protein [RNA processing and modification]
Probab=56.82 E-value=15 Score=47.64 Aligned_cols=44 Identities=32% Similarity=0.414 Sum_probs=23.7
Q ss_pred EEEEeecCCCc---ceeEEEEEecCCCCeEEEecccCCChhhHHHHhh
Q 001468 874 VNLERVGLGQK---NFDMTIVFKDFKRDVLRIDSIPSSSLDGIKEWLD 918 (1073)
Q Consensus 874 v~feRv~~~~k---~FD~~~v~kd~~~~~~~i~~I~~~~l~~ik~wl~ 918 (1073)
++|+|..+--+ .-||-+-|.|+.. -++-++++-..++.-.+=|+
T Consensus 806 ~~fq~Y~~iKk~~~Pld~~~~f~d~~~-~~rp~~k~y~~~ee~~eal~ 852 (1128)
T KOG2051|consen 806 VAFQRYILIKKSQQPLDMEYEFEDFLE-LVRPEMKNYNTLEEADEALD 852 (1128)
T ss_pred HHHHHHhhcccccCCCchhhhHHhhhh-hccccceecccHHHHHHHHH
Confidence 45666555333 4677777777432 33445555555554444443
No 125
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=55.48 E-value=7.5 Score=49.92 Aligned_cols=21 Identities=24% Similarity=0.264 Sum_probs=15.7
Q ss_pred EEEeecCCCcceeEEEEEecC
Q 001468 875 NLERVGLGQKNFDMTIVFKDF 895 (1073)
Q Consensus 875 ~feRv~~~~k~FD~~~v~kd~ 895 (1073)
.+||.|+....|.+.|-++.+
T Consensus 809 iLe~~~~~~~ff~~wf~~~~~ 829 (1010)
T KOG1991|consen 809 ILENQGFLNNFFTLWFQFINQ 829 (1010)
T ss_pred HHHHcCCcccHHHHHHHHHHH
Confidence 367888888888888777643
No 126
>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms]
Probab=55.23 E-value=6.2 Score=49.03 Aligned_cols=6 Identities=0% Similarity=0.423 Sum_probs=2.2
Q ss_pred HHHHhh
Q 001468 913 IKEWLD 918 (1073)
Q Consensus 913 ik~wl~ 918 (1073)
+.++..
T Consensus 191 ~~~~ke 196 (822)
T KOG2141|consen 191 LLDFKE 196 (822)
T ss_pred hhhhhH
Confidence 333333
No 127
>PF03115 Astro_capsid: Astrovirus capsid protein precursor; InterPro: IPR004337 The astrovirus genome is apparently organised with nonstructural proteins encoded at the 5' end and structural proteins at the 3' end []. Proteins in this family are encoded by astrovirus ORF2, one of the three astrovirus ORFs (1a, 1b, 2). The proteins contain a viral RNA-dependent RNA polymerase motif []. The 87kDa precursor polyprotein undergoes an intracellular cleavage to form a 79kDa protein. Subsequently, extracellular trypsin cleavage yields the three proteins forming the infectious virion [].; PDB: 3QSQ_A 3TS3_D.
Probab=52.79 E-value=4.6 Score=51.54 Aligned_cols=13 Identities=8% Similarity=0.432 Sum_probs=0.0
Q ss_pred CCCCeEEeCCCCC
Q 001468 269 CYPPIFQSGGEFD 281 (1073)
Q Consensus 269 ~y~piV~SG~n~~ 281 (1073)
.|.|+-.-+..|.
T Consensus 121 ~fgPlq~~aaqy~ 133 (787)
T PF03115_consen 121 TFGPLQALAAQYS 133 (787)
T ss_dssp -------------
T ss_pred CcCchhhhhhhhh
Confidence 3445444444444
No 128
>COG5593 Nucleic-acid-binding protein possibly involved in ribosomal biogenesis [Translation, ribosomal structure and biogenesis]
Probab=52.44 E-value=5.8 Score=47.50 Aligned_cols=19 Identities=11% Similarity=0.162 Sum_probs=10.1
Q ss_pred hHHHHHHHHHHHHHHHhhh
Q 001468 637 HISEVVQQIKTLRRQVTSR 655 (1073)
Q Consensus 637 ~~~~~~~~I~~l~k~~~~r 655 (1073)
.|-++......|+.-++..
T Consensus 495 ~l~ql~~a~~~lk~l~tn~ 513 (821)
T COG5593 495 SLLQLEMACGDLKNLLTNT 513 (821)
T ss_pred HHHHHHHHhHHHHHHhcCC
Confidence 3444555555555555544
No 129
>PF04889 Cwf_Cwc_15: Cwf15/Cwc15 cell cycle control protein; InterPro: IPR006973 This family represents Cwf15/Cwc15 (from Schizosaccharomyces pombe and Saccharomyces cerevisiae respectively) and their homologues. The function of these proteins is unknown, but they form part of the spliceosome and are thus thought to be involved in mRNA splicing [].; GO: 0000398 nuclear mRNA splicing, via spliceosome, 0005681 spliceosomal complex
Probab=48.05 E-value=9.5 Score=42.33 Aligned_cols=7 Identities=43% Similarity=0.586 Sum_probs=3.1
Q ss_pred ChHHHHH
Q 001468 1018 TWEELER 1024 (1073)
Q Consensus 1018 ~wdele~ 1024 (1073)
.--||++
T Consensus 151 Ll~ELek 157 (244)
T PF04889_consen 151 LLRELEK 157 (244)
T ss_pred HHHHHHH
Confidence 3345543
No 130
>PTZ00415 transmission-blocking target antigen s230; Provisional
Probab=47.85 E-value=14 Score=49.78 Aligned_cols=11 Identities=27% Similarity=0.383 Sum_probs=8.1
Q ss_pred CCcceeEEEEE
Q 001468 882 GQKNFDMTIVF 892 (1073)
Q Consensus 882 ~~k~FD~~~v~ 892 (1073)
..++-||+++-
T Consensus 123 ~~~~~d~~i~~ 133 (2849)
T PTZ00415 123 EIGDLDMIIIK 133 (2849)
T ss_pred hcCCcceEEee
Confidence 45678998884
No 131
>KOG0262 consensus RNA polymerase I, large subunit [Transcription]
Probab=47.47 E-value=19 Score=47.37 Aligned_cols=28 Identities=25% Similarity=0.325 Sum_probs=14.7
Q ss_pred eccceeecCCCCCCCCCC-CceEEEeccC
Q 001468 537 TIGDLVAYKNVNDLPPPR-DLMIQVDQKN 564 (1073)
Q Consensus 537 ~~~~~~sy~~~~~~P~~~-~~~i~vD~~~ 564 (1073)
..++.++.-=-..||.+. .+.|.--.|.
T Consensus 879 I~~~cvP~GLlk~FP~N~mqlM~~SGAKG 907 (1640)
T KOG0262|consen 879 IVKKCVPDGLLKKFPENNMQLMIQSGAKG 907 (1640)
T ss_pred HHhhhccchhhhcCCcchHHHHHHhcCCc
Confidence 334455555556677764 5544433333
No 132
>KOG1834 consensus Calsyntenin [Extracellular structures]
Probab=46.36 E-value=13 Score=45.68 Aligned_cols=10 Identities=40% Similarity=0.507 Sum_probs=6.2
Q ss_pred eEEEEEeeeC
Q 001468 624 YLKEVSLRSK 633 (1073)
Q Consensus 624 fikelt~rs~ 633 (1073)
++-+||.||-
T Consensus 508 ~LasltlrsG 517 (952)
T KOG1834|consen 508 QLASLTLRSG 517 (952)
T ss_pred ccceeEEecc
Confidence 4556777764
No 133
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=44.90 E-value=14 Score=47.71 Aligned_cols=14 Identities=29% Similarity=0.501 Sum_probs=9.1
Q ss_pred cccccccceEeecC
Q 001468 69 RYLKSSALNVWLVG 82 (1073)
Q Consensus 69 ~Y~ks~al~~wLtG 82 (1073)
-|.|+.-...|=.+
T Consensus 60 IYlKN~I~~~W~~~ 73 (1010)
T KOG1991|consen 60 IYLKNKITKSWSSH 73 (1010)
T ss_pred HHHHHHHHhcCCcc
Confidence 46676666667665
No 134
>PF06213 CobT: Cobalamin biosynthesis protein CobT; InterPro: IPR006538 These proteins are CobT subunits of the aerobic cobalt chelatase (aerobic cobalamin biosynthesis pathway). Pseudomonas denitrificans CobT has been experimentally characterised [, ]. Aerobic cobalt chelatase consists of three subunits, CobT, CobN (IPR003672 from INTERPRO) and CobS (IPR006537 from INTERPRO). Cobalamin (vitamin B12) can be complexed with metal via the ATP-dependent reactions (aerobic pathway) (e.g., in P. denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in Salmonella typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. However, aerobic cobalt chelatase subunits CobN and CobS are homologous to Mg-chelatase subunits BchH and BchI, respectively []. CobT, too, has been found to be remotely related to the third subunit of Mg-chelatase, BchD (involved in bacteriochlorophyll synthesis, e.g., in Rhodobacter capsulatus) []. Nomenclature note: CobT of the aerobic pathway P. denitrificans is not a homologue of CobT of the anaerobic pathway (Salmonella typhimurium, Escherichia coli). Therefore, annotation of any members of this family as nicotinate-mononucleotide--5,6-dimethylbenzimidazole phosphoribosyltransferases is erroneous.
Probab=44.32 E-value=24 Score=39.98 Aligned_cols=10 Identities=20% Similarity=0.710 Sum_probs=5.3
Q ss_pred hhhHHHHhhc
Q 001468 910 LDGIKEWLDT 919 (1073)
Q Consensus 910 l~~ik~wl~~ 919 (1073)
++....||..
T Consensus 167 ~~~~R~~l~~ 176 (282)
T PF06213_consen 167 VELWRPWLEE 176 (282)
T ss_pred HHHHHHHHHH
Confidence 4445555554
No 135
>KOG3241 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.85 E-value=16 Score=38.00 Aligned_cols=6 Identities=50% Similarity=0.839 Sum_probs=2.3
Q ss_pred Eeccee
Q 001468 706 HTNGFR 711 (1073)
Q Consensus 706 h~ng~r 711 (1073)
|+|-|-
T Consensus 16 HqN~f~ 21 (227)
T KOG3241|consen 16 HQNKFA 21 (227)
T ss_pred hcccee
Confidence 333333
No 136
>PF05470 eIF-3c_N: Eukaryotic translation initiation factor 3 subunit 8 N-terminus; InterPro: IPR008905 The largest of the mammalian translation initiation factors, eIF3, consists of at least eight subunits ranging in mass from 35 to 170 kDa. eIF3 binds to the 40 S ribosome in an early step of translation initiation and promotes the binding of methionyl-tRNAi and mRNA [].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation, 0005852 eukaryotic translation initiation factor 3 complex
Probab=41.98 E-value=12 Score=46.83 Aligned_cols=38 Identities=18% Similarity=0.427 Sum_probs=28.9
Q ss_pred EEecccCCChhhHHHHhhcCCceeeecccCCChhhhhhhhccCchhh
Q 001468 901 RIDSIPSSSLDGIKEWLDTTDLKYYESRLNLNWRPILKTITDDPEKF 947 (1073)
Q Consensus 901 ~i~~I~~~~l~~ik~wl~~~~i~~~e~~~nlnW~~i~k~i~~d~~~f 947 (1073)
..+......|..+|+=|...+=.| ...|+.-++||..|
T Consensus 101 kms~~nakaln~lkQklkK~~k~~---------e~~i~~yrenPe~~ 138 (595)
T PF05470_consen 101 KMSKNNAKALNTLKQKLKKYNKEY---------EAQIAKYRENPEAF 138 (595)
T ss_pred hcCHHhHHHHHHHHHHHHhhhhhH---------HHHHHHHHhCCccc
Confidence 455666778999999888875543 46788888999877
No 137
>COG5137 Histone chaperone involved in gene silencing [Transcription / Chromatin structure and dynamics]
Probab=40.11 E-value=12 Score=40.02 Aligned_cols=18 Identities=22% Similarity=0.349 Sum_probs=8.5
Q ss_pred cccceeeCceecceeeEE
Q 001468 748 LHNHIMVGNKKTKDVQFY 765 (1073)
Q Consensus 748 L~~pi~~Gkkk~~dvQF~ 765 (1073)
|.||-..|.----.|.|-
T Consensus 12 lnnpaKf~DPykFeitFe 29 (279)
T COG5137 12 LNNPAKFGDPYKFEITFE 29 (279)
T ss_pred ecChhhcCCCeeeEEEEE
Confidence 455555554422244554
No 138
>cd01091 CDC68-like Related to aminopeptidase P and aminopeptidase M, a member of this domain family is present in cell division control protein 68, a transcription factor.
Probab=39.98 E-value=1.7e+02 Score=32.33 Aligned_cols=98 Identities=15% Similarity=0.163 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccccCCCCHHHHHHHHHHHHHccch-hhh----hcccCCCCCCCCCeEEeCCCCCC
Q 001468 208 NIKKAAFLSSSVMKQFVVPKLEKVIDEEKKVSHSSLMDETEKAILEPAR-IKV----KLKAENVDICYPPIFQSGGEFDL 282 (1073)
Q Consensus 208 ~iR~Aa~ia~~a~~~~~~~~i~~iid~e~GvtE~eLa~~ie~~l~~~gk-~~~----~~g~~~~~~~y~piV~SG~n~~l 282 (1073)
.++++..++..+.. ++++.++ ||++-.+|...+...+.+.+. ++. .+|.+ .++.+.. ...
T Consensus 120 ~~~~~y~~~~~a~~-~~i~~lk------pG~~~~dv~~~a~~~i~~~~~~~~~~~~~~~GHg-iGle~hE-------~~~ 184 (243)
T cd01091 120 EQQKNYNFLLALQE-EILKELK------PGAKLSDVYQKTLDYIKKKKPELEPNFTKNLGFG-IGLEFRE-------SSL 184 (243)
T ss_pred HHHHHHHHHHHHHH-HHHHHcC------CCCcHHHHHHHHHHHHHHhChhHHHhCcCCcccc-cCccccc-------Ccc
Confidence 34556667777777 7777888 699999999999888875320 110 11111 0111100 000
Q ss_pred CCCCcCCCcccccCCcceEEEeecee-e----------CCeEeeeEEEEEec
Q 001468 283 KPSASSNDNYLYYDSTSVIICAVGSR-Y----------NSYCSNVARTFLID 323 (1073)
Q Consensus 283 ~~h~~~~dr~L~~G~~dvI~vdlG~~-y----------~GY~sditRT~~Vg 323 (1073)
.+ ...++++|++| .++.+..|.. + +.|..-++-|++|.
T Consensus 185 ~l-~~~~~~~L~~G--Mvf~vepGi~~~~~~~~~~~~~~~~gv~ieDtV~Vt 233 (243)
T cd01091 185 II-NAKNDRKLKKG--MVFNLSIGFSNLQNPEPKDKESKTYALLLSDTILVT 233 (243)
T ss_pred cc-CCCCCCCcCCC--CEEEEeCCcccccCccccCccCCeeEEEEEEEEEEc
Confidence 01 11235789999 9999999985 2 36888899999995
No 139
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=38.58 E-value=21 Score=43.02 Aligned_cols=16 Identities=25% Similarity=0.505 Sum_probs=9.2
Q ss_pred EeecCCCcceeEEEEE
Q 001468 877 ERVGLGQKNFDMTIVF 892 (1073)
Q Consensus 877 eRv~~~~k~FD~~~v~ 892 (1073)
|=.+...|.||+.=.|
T Consensus 25 ~g~g~~~r~~D~~~m~ 40 (641)
T KOG0772|consen 25 EGIGSKARVMDLENMF 40 (641)
T ss_pred cccccceeeechhhhh
Confidence 3444566777765444
No 140
>PF03066 Nucleoplasmin: Nucleoplasmin; InterPro: IPR004301 The nucleophosmin/nucleoplasmin family of chaperones includes nucleophosmin, nucleoplasmin and nucleoplasmin-like proteins. They function as nuclear chaperones which are needed for the proper assembly of nucleosomes and the attainment of proper higher order chromatin structures [].; GO: 0003676 nucleic acid binding; PDB: 2P1B_E 1XB9_I 1XE0_C 1NLQ_A 2VTX_E 1K5J_D 1EJY_N 1EE5_B 3T30_J.
Probab=37.03 E-value=11 Score=38.64 Aligned_cols=9 Identities=11% Similarity=0.065 Sum_probs=3.8
Q ss_pred Ccccceeec
Q 001468 851 TSSCLVELI 859 (1073)
Q Consensus 851 t~~clv~l~ 859 (1073)
...|-+.|.
T Consensus 27 ~~~h~L~L~ 35 (149)
T PF03066_consen 27 ENEHQLSLR 35 (149)
T ss_dssp SSCEEEEEE
T ss_pred CcccEEEEE
Confidence 344444444
No 141
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=35.37 E-value=23 Score=42.67 Aligned_cols=9 Identities=11% Similarity=0.316 Sum_probs=4.0
Q ss_pred EEEEEeecC
Q 001468 873 IVNLERVGL 881 (1073)
Q Consensus 873 ~v~feRv~~ 881 (1073)
+...|++++
T Consensus 41 ~qti~~~~~ 49 (641)
T KOG0772|consen 41 IQTISDLQF 49 (641)
T ss_pred hhhhhhccc
Confidence 333455544
No 142
>PF11705 RNA_pol_3_Rpc31: DNA-directed RNA polymerase III subunit Rpc31; InterPro: IPR024661 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. RNA polymerase III contains seventeen subunits in yeasts and in human cells. Twelve of these are akin to RNA polymerase I or II and the other five are RNA polymerase III-specific, and form the functionally distinct groups: (i) Rpc31-Rpc34-Rpc82, and (ii) Rpc37-Rpc53. Rpc31, Rpc34 and Rpc82 form a cluster of enzyme-specific subunits that contribute to transcription initiation in Saccharomyces cerevisiae and Homo sapiens. There is evidence that these subunits are anchored at or near the N-terminal Zn-fold of Rpc1, itself prolonged by a highly conserved but RNA polymerase III-specific domain []. This entry represents the Rpc31 subunit.
Probab=35.27 E-value=32 Score=37.91 Aligned_cols=9 Identities=0% Similarity=0.143 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 001468 803 MDFQNFVNR 811 (1073)
Q Consensus 803 ~~f~~f~~~ 811 (1073)
..|..+++.
T Consensus 59 ~~lr~~~~~ 67 (233)
T PF11705_consen 59 RELRERMRD 67 (233)
T ss_pred HHHHHHHHh
Confidence 333333333
No 143
>PF03985 Paf1: Paf1 ; InterPro: IPR007133 Members of this family are components of the RNA polymerase II associated Paf1 complex. The Paf1 complex functions during the elongation phase of transcription in conjunction with Spt4-Spt5 and Spt16-Pob3i [, ].
Probab=35.06 E-value=41 Score=40.63 Aligned_cols=13 Identities=8% Similarity=-0.179 Sum_probs=5.9
Q ss_pred ccCCCccEEEEEE
Q 001468 734 QPAEREMITLLHF 746 (1073)
Q Consensus 734 qp~~~e~~v~~h~ 746 (1073)
.....+..+.|.+
T Consensus 293 ~~~~~e~~i~f~~ 305 (436)
T PF03985_consen 293 ASKGYEENIFFVD 305 (436)
T ss_pred CCCCccceEEEEe
Confidence 3344444444444
No 144
>KOG3540 consensus Beta amyloid precursor protein [General function prediction only]
Probab=34.95 E-value=30 Score=41.25 Aligned_cols=8 Identities=25% Similarity=0.339 Sum_probs=4.5
Q ss_pred EEEEeecC
Q 001468 874 VNLERVGL 881 (1073)
Q Consensus 874 v~feRv~~ 881 (1073)
.||||.-.
T Consensus 138 fh~ermD~ 145 (615)
T KOG3540|consen 138 FHQERMDQ 145 (615)
T ss_pred hhcccccc
Confidence 36676543
No 145
>KOG2652 consensus RNA polymerase II transcription initiation factor TFIIA, large chain [Transcription]
Probab=34.78 E-value=33 Score=39.50 Aligned_cols=10 Identities=10% Similarity=0.136 Sum_probs=5.2
Q ss_pred HHHHHHHHHh
Q 001468 644 QIKTLRRQVT 653 (1073)
Q Consensus 644 ~I~~l~k~~~ 653 (1073)
-+++||+-+.
T Consensus 35 vL~eLk~lWe 44 (348)
T KOG2652|consen 35 VLSELKNLWE 44 (348)
T ss_pred HHHHHHHHHH
Confidence 3455555553
No 146
>PF07305 DUF1454: Protein of unknown function (DUF1454); InterPro: IPR009918 This family consists of several Enterobacterial sequences of around 200 residues in length, which are often known as YiiQ proteins. The function of this family is unknown.
Probab=34.62 E-value=1.7e+02 Score=31.23 Aligned_cols=74 Identities=15% Similarity=0.138 Sum_probs=53.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCccccccCCccccccccccccCCCcccCCCCceecCC
Q 001468 325 NTVQSKAYEVLLKAHEAAISALKSGNKVSAAYKAASTVVEKDAPELAANLTRNAGTGIGLEFRESGLSLNAKNDRILKAG 404 (1073)
Q Consensus 325 s~eq~~~y~~llea~~a~i~~lkPGvt~~dV~~aa~~~l~~~Gp~l~~~~~h~~GHgIGle~~E~p~~l~~~~~~~L~~G 404 (1073)
.++|+..-..+.+-+.+++...-|..+..+.-+.+..++.+.+ =..++ -|-+|- +| ++-.++. +.|
T Consensus 114 ~~e~kaar~~a~~YmaAl~r~F~Ptls~eQs~~kl~~lL~~gk--~~~yy----~q~~GA-iR----YVvad~g---ekg 179 (200)
T PF07305_consen 114 GPEQKAARALAIEYMAALMRQFEPTLSPEQSQEKLQKLLTKGK--GSRYY----SQTEGA-IR----YVVADNG---EKG 179 (200)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHcCC--CCcce----eeccCc-eE----EEEecCC---Cce
Confidence 4778888888888899999999999999999999999888765 12233 344442 11 1223333 469
Q ss_pred cEEEEeec
Q 001468 405 MVFNVSLG 412 (1073)
Q Consensus 405 MVf~IEpG 412 (1073)
++|+|||-
T Consensus 180 lTFAVEPI 187 (200)
T PF07305_consen 180 LTFAVEPI 187 (200)
T ss_pred eEEEeeee
Confidence 99999993
No 147
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=34.26 E-value=66 Score=37.27 Aligned_cols=62 Identities=18% Similarity=0.281 Sum_probs=41.0
Q ss_pred eeecCCCCCCCCC-C-CceEEEeccCCEE----EEeeCccccceeeeeeeeeeccccCCCe----eEEEEEeecCC
Q 001468 541 LVAYKNVNDLPPP-R-DLMIQVDQKNEAI----LLPIYGSMVPFHVATVKSVSSQQDTNRS----CYIRIIFNVPG 606 (1073)
Q Consensus 541 ~~sy~~~~~~P~~-~-~~~i~vD~~~~~v----ilPi~G~~vPfHi~tiKn~s~~~e~~~~----~~lrinF~~pg 606 (1073)
..+|.-+.+.|.. + .|++-|=...+.+ -.-||+.+=|+||+.| |.+-+ ++. -+||||++.|.
T Consensus 122 ~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSI---S~NsD-~Et~lSADdLRINLWnle 193 (433)
T KOG1354|consen 122 KEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSI---SVNSD-KETFLSADDLRINLWNLE 193 (433)
T ss_pred cccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeee---eecCc-cceEeeccceeeeecccc
Confidence 3566666665654 4 7777665555444 4458999999999876 44443 321 17999999994
No 148
>COG4547 CobT Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism]
Probab=33.81 E-value=34 Score=40.72 Aligned_cols=10 Identities=10% Similarity=0.408 Sum_probs=4.1
Q ss_pred EEcccceeeC
Q 001468 746 FHLHNHIMVG 755 (1073)
Q Consensus 746 ~~L~~pi~~G 755 (1073)
|...-|.+-|
T Consensus 43 f~~~~P~l~a 52 (620)
T COG4547 43 FAFDRPVLRA 52 (620)
T ss_pred eeccCcceec
Confidence 3334444444
No 149
>TIGR02993 ectoine_eutD ectoine utilization protein EutD. Members of this family are putative peptidases or hydrolases similar to Xaa-Pro aminopeptidase (pfam00557). They belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. The exact function is unknown.
Probab=32.77 E-value=2.5e+02 Score=33.38 Aligned_cols=100 Identities=11% Similarity=0.107 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccccCCCCHHHHHHHHHHHHHccchhhh--hcccCCCCCCCCCeEEeCCCCCCCCC
Q 001468 208 NIKKAAFLSSSVMKQFVVPKLEKVIDEEKKVSHSSLMDETEKAILEPARIKV--KLKAENVDICYPPIFQSGGEFDLKPS 285 (1073)
Q Consensus 208 ~iR~Aa~ia~~a~~~~~~~~i~~iid~e~GvtE~eLa~~ie~~l~~~gk~~~--~~g~~~~~~~y~piV~SG~n~~l~~h 285 (1073)
.++++..++.++.. ++++.|+ ||++-.+|...+...+.+.| +.. ..|.+ .+..++|... .. .+.
T Consensus 271 ~~~~~~~~~~~a~~-~~i~~ik------pG~~~~dv~~~~~~~~~~~G-~~~~h~~Ghg-iGl~~~~~~~--e~---~~~ 336 (391)
T TIGR02993 271 AFLDAEKAVLEGME-AGLEAAK------PGNTCEDIANAFFAVLKKYG-IHKDSRTGYP-IGLSYPPDWG--ER---TMS 336 (391)
T ss_pred HHHHHHHHHHHHHH-HHHHHcC------CCCcHHHHHHHHHHHHHHcC-CccCCCceee-eccCcCCCCC--Cc---ccc
Confidence 35667778888887 7888888 69999999999988887543 110 01110 1111111000 00 011
Q ss_pred C-cCCCcccccCCcceEEEeeceeeCCeEeeeEEEEEec
Q 001468 286 A-SSNDNYLYYDSTSVIICAVGSRYNSYCSNVARTFLID 323 (1073)
Q Consensus 286 ~-~~~dr~L~~G~~dvI~vdlG~~y~GY~sditRT~~Vg 323 (1073)
. ..++..|++| .++.+.-|.-..|+..-+.=|++|.
T Consensus 337 l~~~~~~~L~~G--Mv~tvEpgiy~~~~Gvried~v~VT 373 (391)
T TIGR02993 337 LRPGDNTVLKPG--MTFHFMTGLWMEDWGLEITESILIT 373 (391)
T ss_pred ccCCCCceecCC--CEEEEcceeEeCCCCeEEeeEEEEC
Confidence 1 1245789999 8999998887677766778888884
No 150
>KOG2051 consensus Nonsense-mediated mRNA decay 2 protein [RNA processing and modification]
Probab=31.15 E-value=69 Score=41.97 Aligned_cols=14 Identities=14% Similarity=0.176 Sum_probs=8.8
Q ss_pred CcHHHHHHHHHHHh
Q 001468 168 PEGKLLETWNEKLK 181 (1073)
Q Consensus 168 ~~g~~~~~l~~~l~ 181 (1073)
++..|+.+|.++|+
T Consensus 100 Fs~~~lg~~~k~l~ 113 (1128)
T KOG2051|consen 100 FSTAFLGAFLKALE 113 (1128)
T ss_pred ccHHHHHHHHHhcC
Confidence 45566666766665
No 151
>PRK13607 proline dipeptidase; Provisional
Probab=30.89 E-value=2.1e+02 Score=34.67 Aligned_cols=95 Identities=12% Similarity=0.059 Sum_probs=55.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCccccccCCcccccc-ccccccCCCcccCCCCceecCC
Q 001468 326 TVQSKAYEVLLKAHEAAISALKSGNKVSAAYKAASTVVEKDAPELAANLTRNAGTGI-GLEFRESGLSLNAKNDRILKAG 404 (1073)
Q Consensus 326 ~eq~~~y~~llea~~a~i~~lkPGvt~~dV~~aa~~~l~~~Gp~l~~~~~h~~GHgI-Gle~~E~p~~l~~~~~~~L~~G 404 (1073)
+.++++-+.+.+++.++++.++||++-.+|........ ..++ ....|+..++.|- +.-.|-. +.+..++++|
T Consensus 168 ~~mr~A~~i~~~a~~~~~~~i~pG~tE~ei~~~~~~~~-~~~~-~~~~y~~iva~G~naa~~H~~-----~~~~~~~~~G 240 (443)
T PRK13607 168 ACMREAQKIAVAGHRAAKEAFRAGMSEFDINLAYLTAT-GQRD-NDVPYGNIVALNEHAAVLHYT-----KLDHQAPAEM 240 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHh-CCCC-cCCCCCcEEEecCcceEecCC-----ccCCCCCCCC
Confidence 34567777778889999999999999999987543221 2221 0111222121111 0111211 2233468999
Q ss_pred cEEEEeeccccccCCCCCCCCCeeeEEEEEEEE
Q 001468 405 MVFNVSLGFQNLQTENKNPKTQKFSVLLADTVI 437 (1073)
Q Consensus 405 MVf~IEpG~~~l~~~~~~~~~~~~gvriEDTVl 437 (1073)
.++.+..|.. + ..|..-+.=|+.
T Consensus 241 d~vliD~Ga~-~---------~GY~sDiTRTf~ 263 (443)
T PRK13607 241 RSFLIDAGAE-Y---------NGYAADITRTYA 263 (443)
T ss_pred CEEEEEeeEE-E---------CCEEecceEEEe
Confidence 9999999865 2 236666777766
No 152
>KOG2652 consensus RNA polymerase II transcription initiation factor TFIIA, large chain [Transcription]
Probab=29.80 E-value=41 Score=38.71 Aligned_cols=15 Identities=20% Similarity=0.202 Sum_probs=6.6
Q ss_pred CcEEEEcCceeEEEE
Q 001468 862 PFVVITLSEIEIVNL 876 (1073)
Q Consensus 862 P~~vi~l~eie~v~f 876 (1073)
|...-+=++++-+.+
T Consensus 202 ~q~~~s~nd~~~~~~ 216 (348)
T KOG2652|consen 202 PQVDGSENDVEQIDG 216 (348)
T ss_pred ccccccccccccccc
Confidence 333444445544444
No 153
>KOG2393 consensus Transcription initiation factor IIF, large subunit (RAP74) [Transcription]
Probab=29.34 E-value=44 Score=40.60 Aligned_cols=19 Identities=5% Similarity=0.032 Sum_probs=10.3
Q ss_pred ccceeeeccCCCccEEEEE
Q 001468 727 NIKHAFFQPAEREMITLLH 745 (1073)
Q Consensus 727 nIk~~ffqp~~~e~~v~~h 745 (1073)
|+-...|.+|++--+..|-
T Consensus 140 ~aayy~~~~~q~~~f~A~p 158 (555)
T KOG2393|consen 140 SAAYYVFTGGQNGKFEAFP 158 (555)
T ss_pred cccceeecCCCcccccccc
Confidence 4444556677765444443
No 154
>KOG1980 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.32 E-value=27 Score=43.20 Aligned_cols=36 Identities=11% Similarity=0.264 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhhhHHHHHHhhccccccceeeccCCC
Q 001468 643 QQIKTLRRQVTSRESERAERATLVTQEKLQLASAKF 678 (1073)
Q Consensus 643 ~~I~~l~k~~~~re~e~~e~~~~v~q~~L~~~~~~~ 678 (1073)
+++.-++++-......++.++++.+|-++-..+|..
T Consensus 45 ~~~sk~~rrn~akqlr~qk~~~v~e~~~~~~g~n~a 80 (754)
T KOG1980|consen 45 KTVSKLQRRNQAKQLRKQKREDVLENTRLLGGQNGA 80 (754)
T ss_pred hhhhHHHHHhHHHHHHHhHHHHHHHhhhhccccccc
Confidence 455555555444444555566666666665555544
No 155
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=29.19 E-value=37 Score=42.12 Aligned_cols=13 Identities=15% Similarity=0.378 Sum_probs=7.3
Q ss_pred HHHHhhcCCceee
Q 001468 913 IKEWLDTTDLKYY 925 (1073)
Q Consensus 913 ik~wl~~~~i~~~ 925 (1073)
|-+|...+-=.||
T Consensus 483 lLqF~~NrRP~Yy 495 (811)
T KOG4364|consen 483 LLQFDKNRRPGYY 495 (811)
T ss_pred HhhhccccCCccc
Confidence 4455555555555
No 156
>PTZ00007 (NAP-L) nucleosome assembly protein -L; Provisional
Probab=27.61 E-value=58 Score=37.92 Aligned_cols=37 Identities=19% Similarity=0.356 Sum_probs=19.6
Q ss_pred ccceeeeccCC-CccEEEEEEEcccceeeCceecceeeE
Q 001468 727 NIKHAFFQPAE-REMITLLHFHLHNHIMVGNKKTKDVQF 764 (1073)
Q Consensus 727 nIk~~ffqp~~-~e~~v~~h~~L~~pi~~Gkkk~~dvQF 764 (1073)
||+--++-+.. ....+.|||. .||-+-.+.-++.++|
T Consensus 130 dI~ve~~~~~~~~gf~I~F~F~-~NpyF~N~vLtK~y~~ 167 (337)
T PTZ00007 130 DISCEYTEPNKQEGFILVFTFA-PNPFFSNTVLTKTYHM 167 (337)
T ss_pred ceEEEEccCCCCCceEEEEEeC-CCCCCCCCeEEEEEEe
Confidence 34433443322 3455566665 6777777665555544
No 157
>COG5593 Nucleic-acid-binding protein possibly involved in ribosomal biogenesis [Translation, ribosomal structure and biogenesis]
Probab=26.25 E-value=61 Score=39.31 Aligned_cols=11 Identities=9% Similarity=0.320 Sum_probs=6.0
Q ss_pred cCceeeeeeCc
Q 001468 842 HKASAFIVPTS 852 (1073)
Q Consensus 842 ~~~~~~l~pt~ 852 (1073)
.|.+..+||+.
T Consensus 610 arg~simqpl~ 620 (821)
T COG5593 610 ARGTSIMQPLF 620 (821)
T ss_pred cccchhhhhhh
Confidence 34555666643
No 158
>PF03985 Paf1: Paf1 ; InterPro: IPR007133 Members of this family are components of the RNA polymerase II associated Paf1 complex. The Paf1 complex functions during the elongation phase of transcription in conjunction with Spt4-Spt5 and Spt16-Pob3i [, ].
Probab=26.18 E-value=64 Score=38.99 Aligned_cols=8 Identities=13% Similarity=0.555 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 001468 645 IKTLRRQV 652 (1073)
Q Consensus 645 I~~l~k~~ 652 (1073)
|+.+.+.|
T Consensus 158 i~~Ie~tF 165 (436)
T PF03985_consen 158 IRAIEKTF 165 (436)
T ss_pred HHHHHHHH
Confidence 33333333
No 159
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=26.18 E-value=39 Score=41.35 Aligned_cols=15 Identities=27% Similarity=0.160 Sum_probs=8.0
Q ss_pred eecCCcEEEEeeccc
Q 001468 400 ILKAGMVFNVSLGFQ 414 (1073)
Q Consensus 400 ~L~~GMVf~IEpG~~ 414 (1073)
.|..+|.++-.||.-
T Consensus 212 ~l~~~~~v~s~pg~~ 226 (703)
T KOG2321|consen 212 TLDAASSVNSHPGGD 226 (703)
T ss_pred eeecccccCCCcccc
Confidence 455555555555543
No 160
>PF14470 bPH_3: Bacterial PH domain
Probab=26.13 E-value=2.6e+02 Score=25.45 Aligned_cols=70 Identities=21% Similarity=0.326 Sum_probs=47.6
Q ss_pred CceeeeeeCcccceeeccC-----CcEEEEcCceeEEEEEeecCCCcceeEEEEEecCCCCeEEEecccCCChhhHHHHh
Q 001468 843 KASAFIVPTSSCLVELIET-----PFVVITLSEIEIVNLERVGLGQKNFDMTIVFKDFKRDVLRIDSIPSSSLDGIKEWL 917 (1073)
Q Consensus 843 ~~~~~l~pt~~clv~l~e~-----P~~vi~l~eie~v~feRv~~~~k~FD~~~v~kd~~~~~~~i~~I~~~~l~~ik~wl 917 (1073)
...+.+.-|.+=|+.+.-. .+..++|++|..|++..--++ .. +.|.+ +...++|.+|+..+++.+-+++
T Consensus 21 ~~~g~l~~TnkRlif~~~~~~~~~~~~~i~y~~I~~v~~~~g~~~-~~--i~i~~---~~~~~~i~~i~k~~~~~~~~~i 94 (96)
T PF14470_consen 21 SFPGVLVLTNKRLIFYSKGMFGGKKFESIPYDDITSVSFKKGILG-GK--ITIET---NGEKIKIDNIQKGDVKEFYEYI 94 (96)
T ss_pred CceeEEEEeCCEEEEEEcccCCCceEEEEEhhheEEEEEEccccc-cE--EEEEE---CCEEEEEEEcCHHHHHHHHHHH
Confidence 4455566666656555433 267899999999999952222 22 33333 6778999999999998888776
Q ss_pred h
Q 001468 918 D 918 (1073)
Q Consensus 918 ~ 918 (1073)
+
T Consensus 95 ~ 95 (96)
T PF14470_consen 95 K 95 (96)
T ss_pred h
Confidence 5
No 161
>PF04006 Mpp10: Mpp10 protein; InterPro: IPR007151 This family includes proteins related to Mpp10 (M phase phosphoprotein 10). The U3 small nucleolar ribonucleoprotein (snoRNP) is required for three cleavage events that generate the mature 18S rRNA from the pre-rRNA. In Saccharomyces cerevisiae, depletion of Mpp10, a U3 snoRNP-specific protein, halts 18S rRNA production and impairs cleavage at the three U3 snoRNP-dependent sites [].
Probab=25.79 E-value=78 Score=39.90 Aligned_cols=14 Identities=14% Similarity=0.406 Sum_probs=8.6
Q ss_pred ChHHHHHHHhHHhh
Q 001468 1018 TWEELEREASYADR 1031 (1073)
Q Consensus 1018 ~wdele~~a~~~d~ 1031 (1073)
+.+++++.....++
T Consensus 190 sidEfnk~~e~~E~ 203 (600)
T PF04006_consen 190 SIDEFNKQLEEEER 203 (600)
T ss_pred CHHHHHHHHHHHHH
Confidence 56777766655444
No 162
>KOG3130 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.49 E-value=45 Score=39.01 Aligned_cols=20 Identities=25% Similarity=0.336 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHHHHHHhhhH
Q 001468 637 HISEVVQQIKTLRRQVTSRE 656 (1073)
Q Consensus 637 ~~~~~~~~I~~l~k~~~~re 656 (1073)
++..+-++|++|+|.++.-+
T Consensus 91 R~~~~r~q~~~l~~~~~n~~ 110 (514)
T KOG3130|consen 91 RKEHVRKQIDDLKKVMKNFE 110 (514)
T ss_pred HHHHHHHHHHHHHHHHHhhH
Confidence 56666677777777776443
No 163
>KOG3130 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.38 E-value=41 Score=39.37 Aligned_cols=9 Identities=33% Similarity=0.427 Sum_probs=5.9
Q ss_pred EEEEeeCcc
Q 001468 566 AILLPIYGS 574 (1073)
Q Consensus 566 ~vilPi~G~ 574 (1073)
-|++||+-.
T Consensus 46 ~Imvpig~~ 54 (514)
T KOG3130|consen 46 NIMVPIGPF 54 (514)
T ss_pred ceeeecccc
Confidence 467888643
No 164
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.95 E-value=1.7e+02 Score=37.59 Aligned_cols=137 Identities=16% Similarity=0.186 Sum_probs=0.0
Q ss_pred ceeeecccCCChhhhhhhhccCchhhhhcCCcccccCCC------CCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCccc
Q 001468 922 LKYYESRLNLNWRPILKTITDDPEKFIEDGGWEFLNMEA------SDSESENSQDSDQGYEPSDVQSDSVSDDENDDSES 995 (1073)
Q Consensus 922 i~~~e~~~nlnW~~i~k~i~~d~~~f~~~ggw~fl~~~~------~~~~~~~~e~~d~~~e~~~~e~~~~~~~~~~~~d~ 995 (1073)
+.|..+ +..-+..--.++.+..++-+=-.|.-..++. ....+.++|+++..++.+.++++.+..++++++++
T Consensus 594 s~f~~~--~~~~gslS~lLn~~a~GY~~lp~~~~~~~d~~~~~~~a~~~~~~~e~~e~~~~~~~s~~~ses~~~~~~~~e 671 (968)
T KOG1060|consen 594 SSFKDR--HYQLGSLSLLLNAPAPGYEPLPNWPAVAPDPFPDSERAKLLDSDSEEEETGDDESWSDPESESGESSNFSRE 671 (968)
T ss_pred ccccCC--CcccchHHHHhcCcCcCCccCCCccccCCCCCcchhhcccccCCccccccccccCCCCCccccccCCccccc
Q ss_pred ccccCCCcccc------CcCCcccccCCChHHHHHHHhHHhhhcCCCCCchhHHHhhhcccCCCCCCCCCCCCCCCCCCC
Q 001468 996 LVESEDDEEED------SEEDSEEDKGKTWEELEREASYADREKGADSDSEDERKRRKMKAFGKARAPEKRNPGGSLPKR 1069 (1073)
Q Consensus 996 ~~~~~~~~~e~------~~~~~~~~~g~~wdele~~a~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1069 (1073)
..|..++.++. +++.+++++.. +|-....+.+.+....+-+.+...+..+.-.. .-.+.+.+
T Consensus 672 ~ge~~dsn~~~~~~~d~sdqss~~~ss~-----------~d~~s~se~e~e~~~e~~k~~pet~~~sl~l~-d~~~~n~~ 739 (968)
T KOG1060|consen 672 GGEENDSNEEKDSEDDFSDQSSYEESSA-----------EDSESSSEAESEPTPEKLKEKPETKDVSLDLN-DFTPQNGK 739 (968)
T ss_pred ccccccccccccccccccccchhccccc-----------cccccccccccccCCCccCCCccccccccccc-ccCCCCCC
Q ss_pred CCC
Q 001468 1070 AKL 1072 (1073)
Q Consensus 1070 ~~~ 1072 (1073)
|..
T Consensus 740 P~~ 742 (968)
T KOG1060|consen 740 PVL 742 (968)
T ss_pred CCC
No 165
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=21.52 E-value=84 Score=38.20 Aligned_cols=50 Identities=20% Similarity=0.369 Sum_probs=28.4
Q ss_pred ceeeeeeCcccceeeccC--CcEEEEcCcee-EEEEEeecC-CCcceeE---EEEEe
Q 001468 844 ASAFIVPTSSCLVELIET--PFVVITLSEIE-IVNLERVGL-GQKNFDM---TIVFK 893 (1073)
Q Consensus 844 ~~~~l~pt~~clv~l~e~--P~~vi~l~eie-~v~feRv~~-~~k~FD~---~~v~k 893 (1073)
+.+|+.--.+.=|.|.+. =.|.|+++-=+ ..+|+-|-. ..-.||. .||+-
T Consensus 245 ~e~Filq~p~Vkv~i~d~G~~~fw~~Iet~d~~~l~~~V~~~~np~f~~~~~tFvwn 301 (776)
T COG5167 245 TERFILQKPHVKVVIVDDGKEVFWIRIETRDDVILFEEVRTETNPYFDQKNTTFVWN 301 (776)
T ss_pred hheeeecCCceEEEEEecCCeEEEEEEecccceeehheeccccCcceecccceeeee
Confidence 344444333444444443 66777777666 777887765 4555663 46653
No 166
>PF05793 TFIIF_alpha: Transcription initiation factor IIF, alpha subunit (TFIIF-alpha); InterPro: IPR008851 Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) or RNA polymerase II-associating protein 74 (RAP74) is the large subunit of transcription factor IIF (TFIIF), which is essential for accurate initiation and stimulates elongation by RNA polymerase II [].; GO: 0003677 DNA binding, 0045893 positive regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1F3U_F 1NHA_A 1I27_A 1J2X_A 2K7L_A 1ONV_A.
Probab=20.25 E-value=34 Score=42.31 Aligned_cols=9 Identities=33% Similarity=0.453 Sum_probs=3.8
Q ss_pred ccccceEEE
Q 001468 697 RKLTGSLEA 705 (1073)
Q Consensus 697 kr~~G~le~ 705 (1073)
++..|+.|.
T Consensus 110 ~~~~G~~eg 118 (527)
T PF05793_consen 110 NKFVGIREG 118 (527)
T ss_dssp -EEEEEE--
T ss_pred ceeeeeecc
Confidence 566666554
Done!