Query 001469
Match_columns 1073
No_of_seqs 479 out of 1399
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 01:36:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001469.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001469hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03202 protein argonaute; Pr 100.0 3E-173 7E-178 1613.6 87.7 833 195-1073 27-900 (900)
2 KOG1041 Translation initiation 100.0 4E-153 8E-158 1419.1 76.1 825 199-1073 43-876 (876)
3 KOG1042 Germ-line stem cell di 100.0 1E-124 3E-129 1053.5 55.1 725 206-1020 87-832 (845)
4 cd04657 Piwi_ago-like Piwi_ago 100.0 9E-104 2E-108 924.2 42.7 420 567-1018 1-426 (426)
5 cd04658 Piwi_piwi-like_Euk Piw 100.0 2.2E-96 5E-101 870.2 46.8 439 535-1015 2-447 (448)
6 cd02826 Piwi-like Piwi-like: P 100.0 1.8E-89 3.8E-94 796.9 42.5 384 580-1016 2-393 (393)
7 PF02171 Piwi: Piwi domain; I 100.0 2.3E-73 5E-78 642.7 26.6 299 698-1019 1-302 (302)
8 cd04659 Piwi_piwi-like_ProArk 100.0 5.2E-47 1.1E-51 443.6 27.5 275 694-1015 109-401 (404)
9 PF02170 PAZ: PAZ domain; Int 99.9 7.8E-23 1.7E-27 203.1 10.6 133 409-546 1-135 (135)
10 cd02846 PAZ_argonaute_like PAZ 99.8 1.8E-20 3.8E-25 180.6 13.5 113 409-522 2-114 (114)
11 cd02825 PAZ PAZ domain, named 99.8 5.4E-20 1.2E-24 177.1 11.9 112 408-522 1-115 (115)
12 cd02845 PAZ_piwi_like PAZ doma 99.7 1.2E-17 2.5E-22 160.4 9.4 106 409-523 2-115 (117)
13 PF08699 DUF1785: Domain of un 99.5 1.3E-14 2.8E-19 117.9 2.4 52 356-408 1-52 (52)
14 cd02844 PAZ_CAF_like PAZ domai 99.4 1.9E-13 4.1E-18 134.1 6.6 84 436-523 27-133 (135)
15 PF12764 Gly-rich_Ago1: Glycin 99.2 2.3E-11 5E-16 108.5 8.6 100 86-193 2-103 (104)
16 COG1431 Argonaute homolog, imp 99.1 4.7E-09 1E-13 120.3 18.6 299 639-1016 356-668 (685)
17 cd02843 PAZ_dicer_like PAZ dom 98.5 2.4E-07 5.1E-12 88.1 5.8 67 438-507 39-106 (122)
18 PF12764 Gly-rich_Ago1: Glycin 96.9 0.00092 2E-08 60.6 4.1 50 125-174 40-93 (104)
19 KOG1596 Fibrillarin and relate 94.2 0.18 4E-06 53.6 8.4 10 306-315 217-226 (317)
20 KOG1596 Fibrillarin and relate 93.9 0.22 4.8E-06 53.0 8.3 6 308-313 184-189 (317)
21 PF13032 DUF3893: Domain of un 88.1 0.86 1.9E-05 45.4 5.4 56 961-1020 67-122 (138)
22 COG4371 Predicted membrane pro 85.4 1.4 3.1E-05 46.9 5.4 16 165-180 155-170 (334)
23 smart00157 PRP Major prion pro 80.7 9.4 0.0002 39.2 8.8 11 227-237 158-168 (217)
24 KOG4307 RNA binding protein RB 78.7 27 0.00058 42.8 13.0 12 215-226 869-880 (944)
25 PF08459 UvrC_HhH_N: UvrC Heli 78.6 14 0.0003 37.7 9.5 105 773-913 9-120 (155)
26 PRK11617 endonuclease V; Provi 75.7 91 0.002 33.8 15.1 39 973-1018 179-217 (224)
27 TIGR00194 uvrC excinuclease AB 68.9 34 0.00075 42.4 11.4 108 776-918 382-498 (574)
28 PHA00370 III attachment protei 60.6 26 0.00057 37.8 7.0 6 309-314 256-261 (297)
29 PRK14672 uvrC excinuclease ABC 60.3 74 0.0016 40.0 11.9 109 773-916 452-564 (691)
30 cd06559 Endonuclease_V Endonuc 57.7 48 0.001 35.6 8.6 33 973-1012 175-207 (208)
31 COG1515 Nfi Deoxyinosine 3'end 56.7 1.4E+02 0.0031 31.9 11.7 49 959-1014 163-211 (212)
32 KOG3915 Transcription regulato 55.5 48 0.001 38.8 8.5 11 225-235 182-192 (641)
33 PRK12306 uvrC excinuclease ABC 51.6 1.3E+02 0.0028 37.0 11.9 107 774-917 365-476 (519)
34 PRK14670 uvrC excinuclease ABC 49.2 1.6E+02 0.0034 36.7 12.3 109 774-915 357-470 (574)
35 PRK14667 uvrC excinuclease ABC 46.3 1.5E+02 0.0033 36.8 11.5 106 774-916 360-470 (567)
36 PF04493 Endonuclease_5: Endon 46.0 1.5E+02 0.0032 31.9 10.0 31 974-1011 175-206 (206)
37 PRK14671 uvrC excinuclease ABC 44.9 1.8E+02 0.0039 36.6 12.1 106 774-917 414-525 (621)
38 PF05642 Sporozoite_P67: Sporo 44.2 6E+02 0.013 31.2 15.1 20 530-549 587-606 (727)
39 KOG3875 Peroxisomal biogenesis 40.2 1.1E+02 0.0025 34.2 8.1 18 510-527 318-335 (362)
40 PRK00558 uvrC excinuclease ABC 37.7 2.7E+02 0.0059 34.9 12.1 99 774-909 382-486 (598)
41 PRK14666 uvrC excinuclease ABC 37.5 2.4E+02 0.0052 35.7 11.4 100 774-908 471-571 (694)
42 PRK14669 uvrC excinuclease ABC 35.9 2.8E+02 0.006 35.0 11.7 107 774-916 395-506 (624)
43 KOG3915 Transcription regulato 34.9 1.6E+02 0.0035 34.6 8.6 9 511-519 371-379 (641)
44 PF05387 Chorion_3: Chorion fa 28.4 2.2E+02 0.0047 30.8 7.6 38 186-231 145-183 (277)
45 PLN03138 Protein TOC75; Provis 26.9 46 0.001 42.5 2.9 20 510-529 364-384 (796)
46 PF07555 NAGidase: beta-N-acet 25.4 5.7E+02 0.012 29.2 11.0 104 646-754 18-146 (306)
47 cd01457 vWA_ORF176_type VWA OR 23.7 3.6E+02 0.0078 28.2 8.7 69 835-908 78-151 (199)
48 KOG0037 Ca2+-binding protein, 22.7 1.7E+02 0.0037 31.4 5.7 8 342-349 161-168 (221)
49 PRK14668 uvrC excinuclease ABC 22.1 5.1E+02 0.011 32.4 10.5 99 774-910 374-479 (577)
50 PF09373 PMBR: Pseudomurein-bi 21.8 93 0.002 23.0 2.6 19 847-865 15-33 (33)
51 PRK12330 oxaloacetate decarbox 21.6 4.7E+02 0.01 32.0 9.9 98 644-754 98-198 (499)
52 KOG1924 RhoA GTPase effector D 20.5 3.9E+02 0.0086 33.9 8.8 23 203-226 627-649 (1102)
No 1
>PLN03202 protein argonaute; Provisional
Probab=100.00 E-value=3.3e-173 Score=1613.59 Aligned_cols=833 Identities=38% Similarity=0.649 Sum_probs=709.6
Q ss_pred CCCCccCCCCCCCCCCCCcceEEeeeEEeecC--CCceeeeeEEEcCC----ccchhhhHHHHHHHHHHHHhhccCCccc
Q 001469 195 SSKSVRFPLRPGRGSTGTRCIVKANHFFAELP--DKDLHQYDVTITPE----VTSRGVNRAVMEQLVKLYRESHLGKRLP 268 (1073)
Q Consensus 195 ~~~~~~~p~RP~~Gt~G~~v~l~tN~f~v~~~--~~~iy~YdV~i~p~----~~~k~~~r~i~~~l~~~~~~~~~~~~~~ 268 (1073)
..+...+|+||+|||.|++|.|+||||+|+++ +..||||||+|+|+ +.+++++++|++++++++... +.+..+
T Consensus 27 ~~~~~~~~~RPg~Gt~G~~i~l~aN~f~v~~~~~~~~ly~Y~V~i~p~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~ 105 (900)
T PLN03202 27 SKPKRLPMARRGFGSKGQKIQLLTNHFKVSVNNPDGHFFHYSVSLTYEDGRPVDGKGIGRKVIDKVQETYSSD-LAGKDF 105 (900)
T ss_pred cccccccCCCCCCCCCCCEEEEEeeEEEEeccCCCCcEEEEEEEeccCCCCcccchhhhHHHHHHHHHhhHHh-hCCCce
Confidence 34444678899999999999999999999974 67899999999963 445678889999998876443 444467
Q ss_pred eeeccceEEecCCCCCCcceEEEEEecCCCC------------CC---------CCCCCcEEEEEEEEeeeeChhhHHHH
Q 001469 269 AYDGRKSLYTAGPLPFLSKEFRITLLDDDDG------------QG---------GQRREREFKVVIKLAARADLHHLGLF 327 (1073)
Q Consensus 269 ~yDG~~~lys~~~Lp~~~~~~~v~~~~~~~~------------~~---------~~~~~~~~~v~i~~~~~~~l~~l~~~ 327 (1073)
||||+++|||+.+||+++.+|.|++.+++++ .. ...+.+.|+|+|++++++++.+|.+|
T Consensus 106 ~~Dg~~~l~s~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~i~~~~L~~~ 185 (900)
T PLN03202 106 AYDGEKSLFTVGALPQNKLEFTVVLEDVSSNRNNGNGSPVGNGSPNGGDRKRSRRPYQSKTFKVEISFAAKIPMQAIANA 185 (900)
T ss_pred eecCccceEECccCCCCCceEEEEecccccccccccccccccCCccccccccccccCCCceEEEEEEEccccCHHHHHHH
Confidence 9999999999999998777788887643111 00 01246889999999999999999999
Q ss_pred hccCCCCChHHHHHHHHHHHccCCCCC-cccccccccCCCCCCcccCCCCeEEEecceeeeeccCCceEEeeecceeeEe
Q 001469 328 LQGRQADAPQEALQVLDIVLRELPTTR-YCPVGRSFYSPDLGRRQPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFI 406 (1073)
Q Consensus 328 l~~~~~~~~~~~iq~Lniilr~~~~~~-~~~~gr~ff~~~~~~~~~lg~Gle~~~G~~~Svr~~~~~l~LniDvs~~~F~ 406 (1073)
|.+.....+.++||+||||||+.++.. ++.+||+||++......+++.|+|+|+||++|||+++++|+||||+++++||
T Consensus 186 l~~~~~~~~~~~iq~lnivlr~~~~~~~~~~~gr~ff~~~~~~~~~l~~gle~~~G~~~Svr~~~~~l~LnvDvs~~~F~ 265 (900)
T PLN03202 186 LRGQESENSQDALRVLDIILRQHAAKQGCLLVRQSFFHNDPKNFVDLGGGVLGCRGFHSSFRTTQGGLSLNIDVSTTMIV 265 (900)
T ss_pred HcCCCCCCcHHHHHHHHHHHhhhhhhCCCceeccccCCCCCcccccCCCceEEeeeeeeEeeeccCceEEeeeeeeeeee
Confidence 999988788999999999999988765 8899999998654445678999999999999999999999999999999999
Q ss_pred cCccHHHHHHHHhcCCCCCCCCChHHHHHHHHHhcCcEEEEeecCCccceEEEeccCCCCCCceeeeecCC--------C
Q 001469 407 EPLPVIDFVQQLLNRDVSSRPLSDADRVKIKKALRGVRVEVTHRGNMRRKYRISGLTSQTTGELTFPVDES--------G 478 (1073)
Q Consensus 407 ~~~~l~d~~~~~~~~~~~~~~~~~~~~~~l~~~L~gl~V~~~~~~~~~r~~~I~~i~~~~a~~~~F~~~~~--------g 478 (1073)
+++||+|+|.++.+... ....++.++.++|+|++|.++|+ +++|+|.+|++.++++.+|++++. +
T Consensus 266 ~~~~l~~~l~~~~~~~~----~~~~~~~~~~~~lkGl~V~t~~~---~k~yrI~~i~~~~a~~~~F~~~~~~~~~~~~~~ 338 (900)
T PLN03202 266 QPGPVVDFLIANQNVRD----PFQIDWSKAKRMLKNLRVKVSPS---NQEYKITGLSEKPCKEQTFSLKQRNGNGNEVET 338 (900)
T ss_pred cCCcHHHHHHHhcCcCC----ccchhHHHHHHHhcCCEEEEecC---CceEEEeeccCCCCcceEEEcccCCcccccCCc
Confidence 99999999998765322 11234567999999999999998 579999999999999999986521 3
Q ss_pred cEeeHHHHHHHHcCCccCCC-CCcEEEeccCCccccccccceEeccCccccccCCHHHHHHHHHHhcCCchHHHHHHHHH
Q 001469 479 TLKSVVEYFYETYGFVIQHT-QWPCLQVGNQQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPHERERDIMQT 557 (1073)
Q Consensus 479 ~~isV~~Yf~~~Y~i~L~~p-~lP~v~vg~~~~~~ylP~Elc~i~~gQ~~~~kl~~~q~~~mik~a~~~P~~R~~~I~~~ 557 (1073)
++|||+|||+++|||+|+|| +||||++|+..+++|||||||.|++||+++++|++.|+++||++|+.+|.+|.+.|.++
T Consensus 339 ~~iSv~dYfk~~Yni~l~~p~~lPlv~~g~~~~~~ylP~ElC~i~~~Q~~~~~l~~~q~~~mik~a~~~P~~R~~~i~~~ 418 (900)
T PLN03202 339 VEITVYDYFVKHRGIELRYSGDLPCINVGKPKRPTYFPIELCSLVSLQRYTKALSTLQRSSLVEKSRQKPQERMKVLTDA 418 (900)
T ss_pred ceEEHHHHHHHHcCccccCCCCCCEEEcCCCCCCeEEcceeeEccCCceechhCCHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 58999999999999999996 99999999988999999999999999999999999999999999999999999999999
Q ss_pred HHhccCCCCccccccCeEEcccceEEeeEEcCCCceeecCCCCccccCCcccceeccCceeeeCceeceeEEEEecCCcc
Q 001469 558 VHHNAYHEDPYAREFGIKISEKLASVEARILPAPWLKYHDTGKEKDCLPQVGQWNMMNKKMVNGGTVNHWICINFSRHVQ 637 (1073)
Q Consensus 558 ~~~~~~~~~~~l~~fGi~i~~~~~~v~gRvL~~P~i~y~~~~~~~~~~p~~G~Wnl~~~kf~~~~~l~~W~vv~~~~~~~ 637 (1073)
++.++++.+++|++|||+|+++|++|+|||||+|+|.|+++. .+.|++|+|||++++|+.++.+++|+|++|.++
T Consensus 419 ~~~~~~~~~~~l~~fGi~i~~~~~~V~gRvL~~P~I~y~~~~---~~~p~~g~Wn~~~~kf~~~~~l~~W~vv~~~~~-- 493 (900)
T PLN03202 419 LKSSNYDADPMLRSCGISISSQFTQVEGRVLPAPKLKVGNGE---DFFPRNGRWNFNNKKLVEPTKIERWAVVNFSAR-- 493 (900)
T ss_pred HHHhCCCCchHHHHCCcEecCCceEEeEEEcCCceeecCCCc---ccCCCCCceecCCCEecCCCccceEEEEEecCc--
Confidence 988888888999999999999999999999999999998743 245789999999999999999999999988654
Q ss_pred hHHHHHHHHHHHHHHHhcCcccCCCCcccCCCCCh--hhHHHHHHHHHHHHHhhccCCCCceEEEEEeeCC-CCcchhhh
Q 001469 638 DSIARGFCFELAQMCYISGMAFNPEPVIPPISARP--EHVEKVLKTRYHDAMTKLGQGKELDLLIVILPDN-NGSLYGDL 714 (1073)
Q Consensus 638 ~~~~~~f~~~L~~~~~~~Gm~i~~~p~~~~~~~~~--~~~~~~l~~~~~~a~~~~~~~~~~~lvlvilp~~-~~~~Y~~I 714 (1073)
..++.|++.|.+.|+.+||.+..++.+.....+. ...+..++..++.+.++++ ..++|||||||++ +.++|+.|
T Consensus 494 -~~~~~f~~~l~~~~~~~G~~i~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~qlv~vIlp~~~~~~~Y~~I 570 (900)
T PLN03202 494 -CDIRHLVRDLIKCGEMKGINIEPPFDVFEENPQFRRAPPPVRVEKMFEQIQSKLP--GPPQFLLCILPERKNSDIYGPW 570 (900)
T ss_pred -hhHHHHHHHHHHHHHHCCceeCCCccccccccccccccchHHHHHHHHHHHHhcc--CCCeEEEEEEcCCCCcchHHHH
Confidence 2578999999999999999997643221111000 1112334555554444432 4689999999974 67899999
Q ss_pred hHhhhcccCceeeeeeeccccccchhHHHHHHHHHHhhcCccccccccccccCCCccCCCCeEEEEEEecCCCCCCCCCC
Q 001469 715 KRICETDLGLVSQCCLTKHVFKMSKQYMANVALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSP 794 (1073)
Q Consensus 715 K~~~d~~~GI~TQcv~~~~~~k~~~q~~~Nv~lKiN~KlGG~N~~l~~~~~~~~p~~~~~~tmiiG~DVsHp~~g~~~~p 794 (1073)
|++||+++||+||||... +.++||++|||||||+||||+||.+..+....+|++.+.+|||||+||+||+++....|
T Consensus 571 K~~~~~~~gV~TQcv~~~---~~~~q~~~NIalKiN~KLGG~n~~~~~~~~~~i~~~~~~~tMivG~DVtHp~~g~~~~p 647 (900)
T PLN03202 571 KKKNLSEFGIVTQCIAPT---RVNDQYLTNVLLKINAKLGGLNSLLAIEHSPSIPLVSKVPTIILGMDVSHGSPGQSDVP 647 (900)
T ss_pred HHHHhhccCcccEEeCcc---ccchHHHHHHHHHHhhhhCCcceeecccccccCccccCCCeEEEEEEeecCCCCCCCCC
Confidence 999999999999999654 35789999999999999999999887554455788888899999999999999865579
Q ss_pred cEEEEEeeeCCCCccceeEEEEEccCChhhhhhhhhcccCCCcccchhHHHHHHHHHHHHHc-CCCCceEEEEecCCChh
Q 001469 795 SIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISFRRAT-GQKPQRIIFYRDGVSEG 873 (1073)
Q Consensus 795 SiaavVaS~d~~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~p~~~~~~~~mi~~~L~~f~~~~-~~~P~~IIiyRDGVSEG 873 (1073)
||||||||+||+++++|++.+++|.+++|+|++|+....+ ..+++||+++|+.|++.+ +.+|++|||||||||||
T Consensus 648 Siaa~VaS~d~~~~~~y~s~~~~Q~~~~E~i~~l~~~~~~----~~~~~m~~~~L~~~~~~~~~~~P~~IiiyRDGVseG 723 (900)
T PLN03202 648 SIAAVVSSRQWPLISRYRASVRTQSPKVEMIDSLFKPVGD----KDDDGIIRELLLDFYTSSGKRKPEQIIIFRDGVSES 723 (900)
T ss_pred ceEEEEeccCcccccceeeEEEecCCCceeeeehhccccc----cchHHHHHHHHHHHHHHcCCCCCceeEEEecCCCHH
Confidence 9999999999888999999999999999999987432111 235889999999999875 68999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEEeecccccccccCCCCCCCCCCCCCCcCceeecccccCCCccceeecc
Q 001469 874 QFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCS 953 (1073)
Q Consensus 874 Qf~~Vl~~El~~I~~A~~~~~~~y~P~it~Ivv~KrHhtRff~~~~~~~~~~~~~~N~~pGTVVD~~It~p~~~DFyL~S 953 (1073)
||.+|+++|+++|++||++++++|+|+||||||+||||||||+.+ +.+||+||||||++||||..|||||||
T Consensus 724 Q~~~Vl~~Ev~~i~~a~~~~~~~~~Pkit~Ivv~Krh~tRff~~~--------~~~N~~pGTvVD~~it~p~~~dFyL~S 795 (900)
T PLN03202 724 QFNQVLNIELDQIIEACKFLDESWSPKFTVIVAQKNHHTKFFQAG--------SPDNVPPGTVVDNKICHPRNNDFYMCA 795 (900)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEEeccceeeeeccC--------CCCCCCCceEeccccccCCcceEEEec
Confidence 999999999999999999998899999999999999999999863 358999999999999999999999999
Q ss_pred cCCccccccCceEEEEecCCCCCHHHHHHHHHHhhcccccccCcccccchhHHHHHHHHHHhhhcCcCcCCCCCCccCCC
Q 001469 954 HAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSMTSGTI 1033 (1073)
Q Consensus 954 h~~~qGTarPthY~Vl~De~~~~~d~Lq~lT~~LCy~y~r~t~sVSip~P~yYA~l~a~Rar~~~~~~~~~~~s~~~~~~ 1033 (1073)
|+++|||||||||+||+||+++++|+||+|||+|||+|+|||++||||||||||||+|+|||+||..+.+++++++++++
T Consensus 796 h~~~qGTarPthY~Vl~de~~~~~d~lq~lty~lc~~y~~~t~~VsvpaP~yYAhlla~r~r~~l~~~~~~~~~~~~~~~ 875 (900)
T PLN03202 796 HAGMIGTTRPTHYHVLLDEIGFSADDLQELVHSLSYVYQRSTTAISVVAPVCYAHLAAAQMGQFMKFEDMSETSSSHGGI 875 (900)
T ss_pred ccccccCCcCceEEEEECCCCCCHHHHHHHHHHHhhhhcccCCceecchhHHHHHHHHHHhhhhccccCCcccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999854322222111111
Q ss_pred CCCCCCCCCCCccCCCCCCCCCCCCCcccccccccCeeeC
Q 001469 1034 GRGGMGGGVGARSTRGPGVGAAVRPLPALKENVKRVMFYC 1073 (1073)
Q Consensus 1034 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~M~y~ 1073 (1073)
++ . ...+...+++||++|+++||||
T Consensus 876 ~~-----------~----~~~~~~~~~~~h~~~~~~Mfy~ 900 (900)
T PLN03202 876 TS-----------A----GAVPVPELPRLHENVASSMFFC 900 (900)
T ss_pred CC-----------C----CccccccccccchhhcCCeeeC
Confidence 10 0 0111335788999999999998
No 2
>KOG1041 consensus Translation initiation factor 2C (eIF-2C) and related proteins [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.9e-153 Score=1419.10 Aligned_cols=825 Identities=40% Similarity=0.628 Sum_probs=704.3
Q ss_pred ccCCCCCCCCCCCCcceEEeeeEEeec--CCCc-eeeeeEEEcCCccchhhhH-HHHHHHHHHHHhhccCCccceeeccc
Q 001469 199 VRFPLRPGRGSTGTRCIVKANHFFAEL--PDKD-LHQYDVTITPEVTSRGVNR-AVMEQLVKLYRESHLGKRLPAYDGRK 274 (1073)
Q Consensus 199 ~~~p~RP~~Gt~G~~v~l~tN~f~v~~--~~~~-iy~YdV~i~p~~~~k~~~r-~i~~~l~~~~~~~~~~~~~~~yDG~~ 274 (1073)
...+.||+.|+.|++|.|.||||.+++ ++.. ++||+|++.++...+.+++ .++..+++......+....++|||++
T Consensus 43 ~~~~~rp~~~~~g~~i~~~~n~f~~~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~YDg~~ 122 (876)
T KOG1041|consen 43 RFPMNRPGGGTKGKKIMVLVNHFKVDLKFTEESLFVHYSVGIFNEHGRRKVQCLRFFLDKVKNPELFELKSGGPAYDGQK 122 (876)
T ss_pred cccccCCCCCccceEEEEeeeEEEeccccCCcceEEEeeeeecCCCCchHHHHHHHHHHHHhccccccccCCcccccCCc
Confidence 345579999999999999999999766 4555 9999999999988777764 56665555443333555566799999
Q ss_pred eEEecCCCCCCcceEEEEEecCCCCCCCCCCCcEEEEEEEEeeeeChhhHHHHhccCCCCChHHHHHHHHHHHccCCCCC
Q 001469 275 SLYTAGPLPFLSKEFRITLLDDDDGQGGQRREREFKVVIKLAARADLHHLGLFLQGRQADAPQEALQVLDIVLRELPTTR 354 (1073)
Q Consensus 275 ~lys~~~Lp~~~~~~~v~~~~~~~~~~~~~~~~~~~v~i~~~~~~~l~~l~~~l~~~~~~~~~~~iq~Lniilr~~~~~~ 354 (1073)
+|||..+||....++++.+..+.+ .. .|+++|++++.+.+..+..++.+.....+.+++|+||+++++.++.+
T Consensus 123 ~lyt~~~~~~~~~~~~~~~~~~~~------~~-~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~s~~ 195 (876)
T KOG1041|consen 123 TLYTKLELPEGVVTLDFDVISPKE------WK-KFKVSIKKVSEVVLTKLNGFIYTRGENAPRDANQTLDVVLREIATSQ 195 (876)
T ss_pred eeEeccccccccceEEEEecCCCC------Cc-ceEEEEEecccccccCccccccCccccCchhHHHHHHHHHHhhhchh
Confidence 999977776423333333322211 11 19999999999999999999988877889999999999999999887
Q ss_pred -cccccccccCCCCCCcccCCCCeEEEecceeeeeccCCceEEeeecceeeEecCccHHHHHHHHhcCCCCCCCCChHHH
Q 001469 355 -YCPVGRSFYSPDLGRRQPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVQQLLNRDVSSRPLSDADR 433 (1073)
Q Consensus 355 -~~~~gr~ff~~~~~~~~~lg~Gle~~~G~~~Svr~~~~~l~LniDvs~~~F~~~~~l~d~~~~~~~~~~~~~~~~~~~~ 433 (1073)
+..++++||.........+++|.|+|.||++|+|+++++++||+|+++++||++.+|+++++++++... +.+.....
T Consensus 196 ~~~~~~~sff~~~~~~~~~l~~g~e~~~Gf~~s~r~~~~~~~l~id~~~~~F~k~~~~~~~l~~~~~~~~--~~~~~~~~ 273 (876)
T KOG1041|consen 196 GLNNVGYSFFGNDTREPAKLGGGVEIWEGFHKSIRPTQGGLSLNIDVKTTAFYKGTPVIEFLKKILEIKT--RAFHKDRP 273 (876)
T ss_pred cccccchheecCCCCCccccCCCceeeeeeeeeeeeccCceEEeeeeeeeeeecCcchHHHHHhhhcCcc--cccccccc
Confidence 999999999863323445899999999999999999999999999999999999999999999987643 22222222
Q ss_pred HHHHHHhcCcEEEEeecCCccceEEEeccCCCCCCceeeeecCC-CcEeeHHHHHHHHcCCccCCCCCcEEEeccCCccc
Q 001469 434 VKIKKALRGVRVEVTHRGNMRRKYRISGLTSQTTGELTFPVDES-GTLKSVVEYFYETYGFVIQHTQWPCLQVGNQQRPN 512 (1073)
Q Consensus 434 ~~l~~~L~gl~V~~~~~~~~~r~~~I~~i~~~~a~~~~F~~~~~-g~~isV~~Yf~~~Y~i~L~~p~lP~v~vg~~~~~~ 512 (1073)
..++++|+||+|+++| ++..|.|+|.+++..++.+++|++++. +.++||+|||+++||++|+||+||||++|...+.+
T Consensus 274 ~~~~~~lkgL~v~~~h-~~~~r~~~i~~l~~~~a~~~~F~l~~~~~~~~tV~~Yf~~ky~~~Lkyp~LPcv~v~~~~~~~ 352 (876)
T KOG1041|consen 274 LDIKKALKGLKVYVTH-GKRKRKIKIMGLSKKPAKNTTFELKDKKGREITVADYFLEKYNITLKYPDLPCVVVKRPKREN 352 (876)
T ss_pred hhHHHHhhCcEEEEec-ccCcceEEEecccCCcccCceeeccCCCceEEeHHHHHHHhcCccccCCCCccEeecCCCCCc
Confidence 3389999999999999 566899999999999999999997654 57899999999999999999999999999999999
Q ss_pred cccccceEeccCccccc-cCCHHHHHHHHHHhcCCchHHHHHHHHHHHhccCCCCccccccCeEEcccceEEeeEEcCCC
Q 001469 513 YLPMEVCKIVEGQRYSK-RLNERQITALLKVTCQRPHERERDIMQTVHHNAYHEDPYAREFGIKISEKLASVEARILPAP 591 (1073)
Q Consensus 513 ylP~Elc~i~~gQ~~~~-kl~~~q~~~mik~a~~~P~~R~~~I~~~~~~~~~~~~~~l~~fGi~i~~~~~~v~gRvL~~P 591 (1073)
|+|||+|.|++||++.+ +|++.|+++|++.+++.|++|.+.|.++++...++.|++|++|||+|.++|+.|+|||||||
T Consensus 353 ~~PmElc~i~~gQr~~k~kl~~~q~~~m~k~~~~~P~~R~~~i~~~~~~~~~~~d~~l~~fGi~i~~~~~~v~grvL~~P 432 (876)
T KOG1041|consen 353 FYPMELCNIVPGQRITKEKLTPNQQSAMIKASAVKPDQRQKLIKKVLKSSLKLSNPYLKEFGIIVVSEPTQVEGRVLPPP 432 (876)
T ss_pred ccchhheecccCceeecccCCHHHHHHhhhhhcCCHHHHHHHHHHHHHHhccccchhHHhcCeEEecccccccccccCCc
Confidence 99999999999999998 99999999999999999999999999999988888899999999999999999999999999
Q ss_pred ceeecCCCCccccCCcccceeccCceeeeCceeceeEEEEecCCcchHHHHHHHHHHHHHHHhcCcccCCCCcccCCCCC
Q 001469 592 WLKYHDTGKEKDCLPQVGQWNMMNKKMVNGGTVNHWICINFSRHVQDSIARGFCFELAQMCYISGMAFNPEPVIPPISAR 671 (1073)
Q Consensus 592 ~i~y~~~~~~~~~~p~~G~Wnl~~~kf~~~~~l~~W~vv~~~~~~~~~~~~~f~~~L~~~~~~~Gm~i~~~p~~~~~~~~ 671 (1073)
.|.|+++ .....|..|.|++++++|++++.+..|+|++|....+... +.|+++|++.|+..||.|.. |. .....
T Consensus 433 ~L~~~~~--~~~~~p~~g~~~~~~k~~~~~~~i~~wavv~f~~~~~~~~-~~f~~~L~~~c~~~Gm~i~~-~~--~~~~~ 506 (876)
T KOG1041|consen 433 KLKFGGN--EMPKNPTPGTWFMRNKKFVKPAKIKSWAVVNFSNSETLRQ-KQFVDELIKICKDKGMEIKR-PR--KWAPT 506 (876)
T ss_pred eeeccCC--CCccCCCcCccccccCcccccceEEEEEEEEecccccccH-HHHHHHHHHHHHHcCccccc-cc--ccCcc
Confidence 9999985 3345688999999999999999999999999976654445 89999999999999999976 54 22112
Q ss_pred hhhHHHHHHHHHHHHHhhccCCCCceEEEEEeeCCCCcchhhhhHhhhcccCceeeeeeeccccccchhHHHHHHHHHHh
Q 001469 672 PEHVEKVLKTRYHDAMTKLGQGKELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYMANVALKINV 751 (1073)
Q Consensus 672 ~~~~~~~l~~~~~~a~~~~~~~~~~~lvlvilp~~~~~~Y~~IK~~~d~~~GI~TQcv~~~~~~k~~~q~~~Nv~lKiN~ 751 (1073)
...++..+ ......++....++||+||+++++.++|+.||+++|+.+||+||||+.+++.|..+||++||+||||+
T Consensus 507 ~~~~~~~~----~~~~~~~~~~~~~~li~~I~~~k~~~vy~~lK~~e~t~~gi~tQc~~~~~~~k~~~qtl~Nl~lKiN~ 582 (876)
T KOG1041|consen 507 EESLEDMI----TEKSSMEKAAAGVQLVFIILPEKNPDVHDELKYIEETVGGLTTQCIRPTTAKKMSPQTLANLILKINV 582 (876)
T ss_pred cchhHHHH----HHHHhhhccCCCceEEEEEECCCCcchhHHHHHHHHHhcCceeEEeecchhcccchHHHHHHHHHHhh
Confidence 22333333 22222221125699999999999999999999999999999999999999999999999999999999
Q ss_pred hcCccccccccccccCCCccCCCCeEEEEEEecCCCCCCCC--CCcEEEEEeeeCCCCccceeEEEEEccCChhhhhhhh
Q 001469 752 KVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDS--SPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLF 829 (1073)
Q Consensus 752 KlGG~N~~l~~~~~~~~p~~~~~~tmiiG~DVsHp~~g~~~--~pSiaavVaS~d~~~~~~y~~~~~~Q~~~~E~i~~l~ 829 (1073)
||||+|+.|.++.....| +.+.||||||+|||||+++... .|||||||+|+|| +.++|.+.+++|.+++|+|+++
T Consensus 583 KlGG~N~~l~~~~~~~~~-~~~~ptl~IG~dVsHp~~~~~~~~~PSiagvv~s~~~-~~~~y~g~~~~Q~~r~e~i~~~- 659 (876)
T KOG1041|consen 583 KLGGLNYVLVSPRSSRGP-KLDSPTLFIGFDVSHPAAGTSFDGNPSIVGVVYNLDW-HPQKFAGFVRFQKSRQEVIQDL- 659 (876)
T ss_pred ccCceeeEEecccccCcc-cCCCCeEEEEEeeeCCCcCCCcCCCccEEEEEecccc-cchhhcceEEEecCChhhhcch-
Confidence 999999988876433344 4578999999999999998754 5999999999997 9999999999999999999985
Q ss_pred hcccCCCcccchhHHHHHHHHHHHHHcCCCCceEEEEecCCChhHHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEEeec
Q 001469 830 KTWQDPVRGAVSGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKR 909 (1073)
Q Consensus 830 ~~~~~p~~~~~~~~mi~~~L~~f~~~~~~~P~~IIiyRDGVSEGQf~~Vl~~El~~I~~A~~~~~~~y~P~it~Ivv~Kr 909 (1073)
.+|+.++|..|+++++.+|+||||||||||||||.+|+++|+.+||+||..+.++|+|+||||||+||
T Consensus 660 ------------~~~~~~~l~~f~~~t~~~P~~IIiyRdGvSEgqf~~vl~~E~~~ir~a~~~~~~~y~P~it~Iv~qKr 727 (876)
T KOG1041|consen 660 ------------GEMIRELLRSFRKSTRKLPDRIVIYRDGVSEGQFSMVLEEELRAIKEACKKLQEGYNPKITVIVAQKR 727 (876)
T ss_pred ------------HHHHHHHHHHHHHhccCCCceEEEEecCCccchHHHHHHHHHHHHHHHHHHhCCCCCCceEEEEEEcc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCCCCCCCCCCCCCcCceeecccccCCCccceeecccCCccccccCceEEEEecCCCCCHHHHHHHHHHhhc
Q 001469 910 HHTRLFANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCY 989 (1073)
Q Consensus 910 HhtRff~~~~~~~~~~~~~~N~~pGTVVD~~It~p~~~DFyL~Sh~~~qGTarPthY~Vl~De~~~~~d~Lq~lT~~LCy 989 (1073)
||||||+.+..+ +..++.+||+||||||+.||||.++|||||||.++|||||||||||||||++|++|+||+|||+|||
T Consensus 728 HhtR~F~~~~~~-~~~~~~~Nv~pGT~VD~~It~p~~~dFyL~sh~g~qGTsrp~~Y~VL~dd~~~~~d~lq~lt~~Lc~ 806 (876)
T KOG1041|consen 728 HHTRLFAAELSK-DGKAQSQNVPPGTVVDTTITSPGYFDFYLCSHHGLQGTSKPTHYTVLYDDIGFSKDELQKLTYALCF 806 (876)
T ss_pred cceeeecccCCC-CccCCccCCCCCCEecccccCCCcceEEEeccCcccccccCceEEEEeCCCCCCHHHHHHHHHHHhh
Confidence 999999998762 2256789999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCcccccchhHHHHHHHHHHhhhcCcCcCCCCCCccCCCCCCCCCCCCCCccCCCCCCCCCCCCCcccccccccC
Q 001469 990 TYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSMTSGTIGRGGMGGGVGARSTRGPGVGAAVRPLPALKENVKRV 1069 (1073)
Q Consensus 990 ~y~r~t~sVSip~P~yYA~l~a~Rar~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 1069 (1073)
+|+|||++||||+|+||||++|+|||.|.+....+.+...++.+.. ......+..++++|.++.++
T Consensus 807 ~~qr~t~pvSiP~P~YyA~~~A~Rgr~~~~~~~~~~~~~~~~~s~~--------------~~~~~~~~~~~~~~~~~~~~ 872 (876)
T KOG1041|consen 807 THQRCTKPVSLPAPLYYAHEVAKRGRNNYKEHLREKNSSAIYQSIV--------------DLDALNSEEGYKEKAGLFGT 872 (876)
T ss_pred heeeecCCCcCCchHHHHHHHHHHhhhhhhhhccccCCCccccccc--------------ccchhhhhhHHHhhhcccce
Confidence 9999999999999999999999999998332222222211111100 01112245578999999999
Q ss_pred eeeC
Q 001469 1070 MFYC 1073 (1073)
Q Consensus 1070 M~y~ 1073 (1073)
||||
T Consensus 873 ~f~a 876 (876)
T KOG1041|consen 873 RFNA 876 (876)
T ss_pred EEeC
Confidence 9998
No 3
>KOG1042 consensus Germ-line stem cell division protein Hiwi/Piwi; negative developmental regulator [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1.2e-124 Score=1053.48 Aligned_cols=725 Identities=26% Similarity=0.426 Sum_probs=629.2
Q ss_pred CCCCCCCcceEEeeeEEeec-CCCceeeeeEEEcCCccchhhhHHHHHHHHHHHHhhccCCccceeeccceEEecCCCCC
Q 001469 206 GRGSTGTRCIVKANHFFAEL-PDKDLHQYDVTITPEVTSRGVNRAVMEQLVKLYRESHLGKRLPAYDGRKSLYTAGPLPF 284 (1073)
Q Consensus 206 ~~Gt~G~~v~l~tN~f~v~~-~~~~iy~YdV~i~p~~~~k~~~r~i~~~l~~~~~~~~~~~~~~~yDG~~~lys~~~Lp~ 284 (1073)
..|+.|.+|+|.||||++.. +++.||||+|+++|++++++++++++. .|.+. +|. ..+|||. .||..++|..
T Consensus 87 KtGssG~pv~l~tN~f~l~t~p~w~iyqYhVef~P~ves~rlR~~~L~----~h~~l-ig~-~~~FDG~-iLfl~~k~eq 159 (845)
T KOG1042|consen 87 KTGSSGIPVKLQTNFFRLMTRPDWSIYQYHVEFEPDVESRRLREALLY----NHTDL-IGK-GYAFDGT-ILFLKEKFEQ 159 (845)
T ss_pred ccCCCCceEEEEeceeeeccCCCcEEEEEEEeeccccccHHHHHHHHH----HhHhh-hcc-ceeecce-eehhhHHHhh
Confidence 57999999999999999866 589999999999999999888776654 34332 443 3589996 8999998854
Q ss_pred CcceEEEEEecCCCCCCCCCCCcEEEEEEEEeeeeChhhHHHHhccCCCCChHHHHHHHHHHHccC-CCCCccccccccc
Q 001469 285 LSKEFRITLLDDDDGQGGQRREREFKVVIKLAARADLHHLGLFLQGRQADAPQEALQVLDIVLREL-PTTRYCPVGRSFY 363 (1073)
Q Consensus 285 ~~~~~~v~~~~~~~~~~~~~~~~~~~v~i~~~~~~~l~~l~~~l~~~~~~~~~~~iq~Lniilr~~-~~~~~~~~gr~ff 363 (1073)
+..+ .+. .++....++|+||+++++.. ++.+.||++|+|+|.. -.+++..+||+||
T Consensus 160 ~~te---l~~-------ks~~ge~i~I~ik~~~~~~~-------------t~p~~iqv~NlI~RR~~k~L~L~qigRnyy 216 (845)
T KOG1042|consen 160 KQTE---LVS-------KSRDGELIKITIKLTNELPS-------------TDPQCIQVFNLILRRSMKGLNLTQIGRNYY 216 (845)
T ss_pred hhhe---eec-------ccCCCceEEEEEEEeccccC-------------CChhHHHHHHHHHHHHHhhccHHHhhhccC
Confidence 3211 111 23566789999999988743 3568999999999984 4678999999999
Q ss_pred CCCCCCcccC-CCCeEEEecceeeeeccCCceEEeeecceeeEecCccHHHHHHHHhcCCCCCCCCChHHHHHHHHHhcC
Q 001469 364 SPDLGRRQPL-GEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVQQLLNRDVSSRPLSDADRVKIKKALRG 442 (1073)
Q Consensus 364 ~~~~~~~~~l-g~Gle~~~G~~~Svr~~~~~l~LniDvs~~~F~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~l~~~L~g 442 (1073)
++.. +.++ ..-+++|+||-+|||..+..++|+.|++|+ ..+..+|+|+|..+... ++....++++.+.|
T Consensus 217 np~~--~i~ip~~km~lwPGy~tSIrq~E~~illctei~hK-vmR~ETvy~~m~~~~~~-------~~~~qe~~~~~~~g 286 (845)
T KOG1042|consen 217 DPRA--KIEIPEFKMSLWPGYETSIRQHENDILLCTEISHK-VMRTETVYDIMRSCQHN-------TQRFQETVNKNVIG 286 (845)
T ss_pred CCCc--ccccccccceecCcchhHHHHhhhceeeehhhhhh-HhhhhHHHHHHHHHhhC-------HHHHHHHHHHHhcc
Confidence 9863 3444 568999999999999999999999999998 58889999999998652 34567789999999
Q ss_pred cEEEEeecCCccceEEEeccCCCCCCceeeeecCCCcEeeHHHHHHHHcCCccCCCCCcEEEeccCC--------ccccc
Q 001469 443 VRVEVTHRGNMRRKYRISGLTSQTTGELTFPVDESGTLKSVVEYFYETYGFVIQHTQWPCLQVGNQQ--------RPNYL 514 (1073)
Q Consensus 443 l~V~~~~~~~~~r~~~I~~i~~~~a~~~~F~~~~~g~~isV~~Yf~~~Y~i~L~~p~lP~v~vg~~~--------~~~yl 514 (1073)
+.|.|.|+ +|+|+|.+|++..++..+|..++ .+||+.|||+++|||+|++-+||+|....++ ..++|
T Consensus 287 livLT~YN---NktyriddvD~~~tP~stF~k~d--geIs~veYyk~qYni~I~dl~QPlliS~~k~K~~~g~~~q~~~l 361 (845)
T KOG1042|consen 287 LIVLTRYN---NKTYRIDDVDFSQTPLSTFKKDD--GEISFVEYYKKQYNIEITDLNQPLLISEPKDKRPKGEPPQLAML 361 (845)
T ss_pred eEEEEecC---CceeeeeccccCcCccceeeecC--ceeeHhHHHHHhcCeEEeeCCcceEeccCcccCCCCCCccceee
Confidence 99999998 79999999999999999998653 4899999999999999999999999985432 35799
Q ss_pred cccceEeccCccccccCCHHHHHHHHHHhcCCchHHHHHHHHHHHhccCCCC--ccccccCeEEcccceEEeeEEcCCCc
Q 001469 515 PMEVCKIVEGQRYSKRLNERQITALLKVTCQRPHERERDIMQTVHHNAYHED--PYAREFGIKISEKLASVEARILPAPW 592 (1073)
Q Consensus 515 P~Elc~i~~gQ~~~~kl~~~q~~~mik~a~~~P~~R~~~I~~~~~~~~~~~~--~~l~~fGi~i~~~~~~v~gRvL~~P~ 592 (1073)
.||||.++ |-...++-+.+.+++|.+++...|.+|...+..++..+.-+.+ +.|+.|||+++.++++|+|||||+.+
T Consensus 362 IPELc~~T-GLtd~mr~dF~~Mkama~hTRlsP~qR~~rlr~li~~l~~n~~~~~~lr~Wgi~ld~~l~~v~gRil~sEk 440 (845)
T KOG1042|consen 362 IPELCFLT-GLTDEMRSDFQLMKAMAEHTRLSPQQRQDRLRRLIDRLQKNPNSVEELRDWGISLDSNLAEVQGRILPSEK 440 (845)
T ss_pred ehhhhhcc-CCcHHHHhhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChHHHHHHHhcCcccCcchhhccceecCccc
Confidence 99999998 5555566677789999999999999999999888776643332 46999999999999999999999999
Q ss_pred eeecCCCCccccCCccccee--ccCceeeeCceeceeEEEEecCCcchHHHHHHHHHHHHHHHhcCcccCCCCcccCCCC
Q 001469 593 LKYHDTGKEKDCLPQVGQWN--MMNKKMVNGGTVNHWICINFSRHVQDSIARGFCFELAQMCYISGMAFNPEPVIPPISA 670 (1073)
Q Consensus 593 i~y~~~~~~~~~~p~~G~Wn--l~~~kf~~~~~l~~W~vv~~~~~~~~~~~~~f~~~L~~~~~~~Gm~i~~~p~~~~~~~ 670 (1073)
|.+++.. ....+....|. ++.-+++....+++|++++..++ ..++++|++.|.+.+..+||+|.++-++.+.++
T Consensus 441 I~~~~~~--~~~~~~~ADWsr~~R~c~i~~~~~l~~W~vi~p~r~--~~~a~~fi~~l~r~a~~mgm~i~~P~~v~i~dd 516 (845)
T KOG1042|consen 441 ILFGNQK--VPYEGKQADWSREFRTCGILRGSNLDNWAVIYPGRN--NSEAQEFINMLRRVASSMGMQIREPICVEIKDD 516 (845)
T ss_pred eecCCcc--cCCCcchhhhhhhcccccccccCCCcceEEEecCcc--HHHHHHHHHHHHHhccccceecCCceEEEeCCC
Confidence 9999742 12334557895 67778899999999999976554 458899999999999999999988777777777
Q ss_pred ChhhHHHHHHHHHHHHHhhccCCCCceEEEEEeeCCCCcchhhhhHhhhcccCceeeeeeeccccccc--hhHHHHHHHH
Q 001469 671 RPEHVEKVLKTRYHDAMTKLGQGKELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMS--KQYMANVALK 748 (1073)
Q Consensus 671 ~~~~~~~~l~~~~~~a~~~~~~~~~~~lvlvilp~~~~~~Y~~IK~~~d~~~GI~TQcv~~~~~~k~~--~q~~~Nv~lK 748 (1073)
+++.+-+++++.. +.++|+|+||||+++.+.|+.||++++++..||||||..+|+.+.. .++...||||
T Consensus 517 r~~tYvraiqq~v---------~~D~qmvvcil~~~nk~~Y~sIKK~~cvd~pvPsQ~V~lrTl~~~~~lmSIAtKI~lQ 587 (845)
T KOG1042|consen 517 RPGTYVRAIQQVV---------GADIQMVVCILPSDNKTRYDSIKKYLCVDCPVPSQCVNLRTLAKRSKLMSIATKIALQ 587 (845)
T ss_pred ChHHHHHHHHHhc---------cCCceEEEEEecCCchhhHHHHHhheeccCCCccceEEEEeecCcchhHHHHHHHHHH
Confidence 7888888777654 3579999999999999999999999999999999999999997644 5678899999
Q ss_pred HHhhcCccccccccccccCCCccCCCCeEEEEEEecCCCCCCCCCCcEEEEEeeeCCCCccceeEEEEEccCChhhhhhh
Q 001469 749 INVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDL 828 (1073)
Q Consensus 749 iN~KlGG~N~~l~~~~~~~~p~~~~~~tmiiG~DVsHp~~g~~~~pSiaavVaS~d~~~~~~y~~~~~~Q~~~~E~i~~l 828 (1073)
|||||||..|.++ ||+ +.+||||+||+|.+.. ...|++|+||||| ..+++|+|.+..|...+|+.+.|
T Consensus 588 mnCKlGg~lW~V~------IPL---k~lMiVG~Dv~hd~~~--k~rsvga~VAs~n-~~~tr~fS~v~~~~~~qel~d~L 655 (845)
T KOG1042|consen 588 MNCKLGGELWKVE------IPL---KGLMIVGFDVYHDPTL--KGRSVGAFVASMN-NDFTRWFSRVIEQENGQELADNL 655 (845)
T ss_pred HhhhhcCcceEEe------eec---ccceEEEEEeecCccc--cCceEEEEEEeec-cchhhhhhheecccCHHHHHHHH
Confidence 9999999999886 665 5699999999998643 3579999999999 99999999999999999999988
Q ss_pred hhcccCCCcccchhHHHHHHHHHHHHHcCCCCceEEEEecCCChhHHHHHHHHHHH----HHHHHHHhhCCCCCCCEEEE
Q 001469 829 FKTWQDPVRGAVSGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLYELD----AIRKACASLEPNYQPPVTFV 904 (1073)
Q Consensus 829 ~~~~~~p~~~~~~~~mi~~~L~~f~~~~~~~P~~IIiyRDGVSEGQf~~Vl~~El~----~I~~A~~~~~~~y~P~it~I 904 (1073)
.-+|..+|++|++.|..+|+|||||||||++||+.+|.++||+ ++.+.++++..+++|+++||
T Consensus 656 -------------~~~~~~ALr~y~~~n~~LPsRIi~YRDGVgDGQLk~l~n~EV~~~~dql~~~~a~~~~~~~~rl~~i 722 (845)
T KOG1042|consen 656 -------------KVFLAKALRQYYEVNRTLPSRIIVYRDGVGDGQLKTLVNYEVPLVCDQLLDCYAELSNKEKPRLAVI 722 (845)
T ss_pred -------------HHHHHHHHHHHHHhcccCCceEEEEecCCCCcccceeeeeccchHHHHHHHHHHHhcCCCCCcEEEE
Confidence 6899999999999999999999999999999999999999999 77777788887899999999
Q ss_pred EEeecccccccccCCCCCCCCCCCCCCcCceeecccccCCCccceeecccCCccccccCceEEEEecCCCCCHHHHHHHH
Q 001469 905 VVQKRHHTRLFANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLT 984 (1073)
Q Consensus 905 vv~KrHhtRff~~~~~~~~~~~~~~N~~pGTVVD~~It~p~~~DFyL~Sh~~~qGTarPthY~Vl~De~~~~~d~Lq~lT 984 (1073)
||+||.+||||..... +..||+||||||++||.|..+||||+||+..|||..||||.||||++++++|.+|+||
T Consensus 723 VV~KrvntR~f~~~~~------~~~NP~PGTVVD~~iT~pEryDFyLvsQ~VrqGtvsPTsYnvi~d~~gL~PDkmQrLt 796 (845)
T KOG1042|consen 723 VVTKRVNTRFFLQGSS------NAQNPPPGTVVDDTITRPERYDFYLVSQAVRQGTVSPTSYNVIYDDMGLSPDKMQRLT 796 (845)
T ss_pred EEEeeccHHHHhhCCc------cccCCCCCceecceecccceeeeEeehhhhhcCCcCCceEEEEecCCCCCHHHHHHHH
Confidence 9999999999997643 5689999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcccccccCcccccchhHHHHHHHHHHhhhcCc
Q 001469 985 NNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEP 1020 (1073)
Q Consensus 985 ~~LCy~y~r~t~sVSip~P~yYA~l~a~Rar~~~~~ 1020 (1073)
|+|||+|++|.+.|++||||.|||++|+....-++.
T Consensus 797 fKlCHlYyNW~GtiRVPApCqYAHKLAfLv~qslH~ 832 (845)
T KOG1042|consen 797 FKLCHLYYNWPGTIRVPAPCQYAHKLAFLVAQSLHR 832 (845)
T ss_pred HHHhheeecCCcceeccchhHHHHHHHHHHHhhhhh
Confidence 999999999999999999999999999988765554
No 4
>cd04657 Piwi_ago-like Piwi_ago-like: PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing.
Probab=100.00 E-value=8.9e-104 Score=924.24 Aligned_cols=420 Identities=54% Similarity=0.924 Sum_probs=373.5
Q ss_pred ccccccCeEEcccceEEeeEEcCCCceeecCCCCccccCCcccceeccCceeeeCceeceeEEEEecCCcch----HHHH
Q 001469 567 PYAREFGIKISEKLASVEARILPAPWLKYHDTGKEKDCLPQVGQWNMMNKKMVNGGTVNHWICINFSRHVQD----SIAR 642 (1073)
Q Consensus 567 ~~l~~fGi~i~~~~~~v~gRvL~~P~i~y~~~~~~~~~~p~~G~Wnl~~~kf~~~~~l~~W~vv~~~~~~~~----~~~~ 642 (1073)
++|++|||+|+++|++|+||+|+||+|.|+++. ....+.+|+||+++++|+.++.+++|+||++.+..+. +.++
T Consensus 1 ~~l~~fGi~i~~~~~~v~grvL~~P~i~y~~~~--~~~~~~~g~W~~~~~~f~~~~~~~~W~vi~~~~~~~~~~~~~~~~ 78 (426)
T cd04657 1 PYLKEFGISVSKEMITVPGRVLPPPKLKYGDSS--KTVPPRNGSWNLRGKKFLEGGPIRSWAVLNFAGPRRSREERADLR 78 (426)
T ss_pred ChhHhCCCEecCCeeEEeEEEcCCceeeccCCc--cccCCCCCceeecCcccCCCcccceEEEEEecCccccchhHHHHH
Confidence 468999999999999999999999999999633 2345789999999999999999999999988653221 4789
Q ss_pred HHHHHHHHHHHhcCcccCCCCcccCCCCChhhHHHHHHHHHHHHHhhccCCCCceEEEEEeeCCCCcchhhhhHhhhccc
Q 001469 643 GFCFELAQMCYISGMAFNPEPVIPPISARPEHVEKVLKTRYHDAMTKLGQGKELDLLIVILPDNNGSLYGDLKRICETDL 722 (1073)
Q Consensus 643 ~f~~~L~~~~~~~Gm~i~~~p~~~~~~~~~~~~~~~l~~~~~~a~~~~~~~~~~~lvlvilp~~~~~~Y~~IK~~~d~~~ 722 (1073)
.|++.|.+.|+.+||.+. .... ...+. ++.+++.+.+.. ...++|||||||+++.++|+.||++||+++
T Consensus 79 ~F~~~l~~~~~~~g~~~~--~~~~---~~~~~----~~~~~~~~~~~~--~~~~~lv~~ilp~~~~~~Y~~iK~~~~~~~ 147 (426)
T cd04657 79 NFVDQLVKTVIGAGINIT--TAIA---SVEGR----VEELFAKLKQAK--GEGPQLVLVILPKKDSDIYGRIKRLADTEL 147 (426)
T ss_pred HHHHHHHHHHHhcCCccc--cccc---ccchh----HHHHHHHHHhhc--cCCCCEEEEEEcCCCcchHHHHHHHHhhcC
Confidence 999999999999999986 1111 11222 333333333322 136899999999988889999999999999
Q ss_pred Cceeeeeeeccccc-cchhHHHHHHHHHHhhcCccccccccccccCCCccCCCCeEEEEEEecCCCCCC-CCCCcEEEEE
Q 001469 723 GLVSQCCLTKHVFK-MSKQYMANVALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGE-DSSPSIAAVV 800 (1073)
Q Consensus 723 GI~TQcv~~~~~~k-~~~q~~~Nv~lKiN~KlGG~N~~l~~~~~~~~p~~~~~~tmiiG~DVsHp~~g~-~~~pSiaavV 800 (1073)
||+||||..+++.| .++||+.||+||||+||||+||.|++.. .+++...+|||||+||+||++++ ...|||||||
T Consensus 148 gI~TQci~~~~~~k~~~~~~~~NI~lKin~KlGG~n~~v~~~~---~~~~~~~~tmiiG~Dv~H~~~~~~~~~pSiaa~V 224 (426)
T cd04657 148 GIHTQCVLAKKVTKKGNPQYFANVALKINLKLGGINHSLEPDI---RPLLTKEPTMVLGADVTHPSPGDPAGAPSIAAVV 224 (426)
T ss_pred CcccEEEcccccccccchHHHHHHHHHHHHhcCCEeeeccccc---ccccCCCCEEEEEEeeecCCCCCCCCCCcEEEEE
Confidence 99999999999986 7899999999999999999999997641 23445689999999999999875 4679999999
Q ss_pred eeeCCCCccceeEEEEEccCChhhhhhhhhcccCCCcccchhHHHHHHHHHHHHHcCCCCceEEEEecCCChhHHHHHHH
Q 001469 801 ASQDWPEVTKYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLL 880 (1073)
Q Consensus 801 aS~d~~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~p~~~~~~~~mi~~~L~~f~~~~~~~P~~IIiyRDGVSEGQf~~Vl~ 880 (1073)
||+| .++++|.+.+++|..++|+|++| ++|++++|+.|++.++.+|++|||||||||||||.+|++
T Consensus 225 as~d-~~~~~y~~~~~~q~~~~e~i~~l-------------~~~~~~~l~~~~~~~~~~P~~IiiyRDGvsegq~~~v~~ 290 (426)
T cd04657 225 ASVD-WHLAQYPASVRLQSHRQEIIDDL-------------ESMVRELLRAFKKATGKLPERIIYYRDGVSEGQFAQVLN 290 (426)
T ss_pred EecC-CcccccceEEEEeCCCcchHHHH-------------HHHHHHHHHHHHHHhCCCCceEEEEEcCcCHHHHHHHHH
Confidence 9999 99999999999999999999998 799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCCCCEEEEEEeecccccccccCCCCCCCCCCCCCCcCceeecccccCCCccceeecccCCcccc
Q 001469 881 YELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGT 960 (1073)
Q Consensus 881 ~El~~I~~A~~~~~~~y~P~it~Ivv~KrHhtRff~~~~~~~~~~~~~~N~~pGTVVD~~It~p~~~DFyL~Sh~~~qGT 960 (1073)
+|+++|++||.+++++|+|+||||||+||||||||+.+..+.+ .+.+||+||||||++||+|.+||||||||.++|||
T Consensus 291 ~E~~~i~~a~~~~~~~~~pkit~ivv~Krh~~Rff~~~~~~~~--~~~~N~~pGTvVd~~it~p~~~dFyL~sh~~~qGT 368 (426)
T cd04657 291 EELPAIRKACAKLYPGYKPKITFIVVQKRHHTRFFPTDEDDAD--GKNGNVPPGTVVDRGITHPREFDFYLCSHAGIQGT 368 (426)
T ss_pred HHHHHHHHHHHHhccCCCCcEEEEEeccceeeeEeccCccccc--ccCCCCCCCeEEecccCCCCceeEEEeccccCccC
Confidence 9999999999999888999999999999999999998765421 23799999999999999999999999999999999
Q ss_pred ccCceEEEEecCCCCCHHHHHHHHHHhhcccccccCcccccchhHHHHHHHHHHhhhc
Q 001469 961 SRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYM 1018 (1073)
Q Consensus 961 arPthY~Vl~De~~~~~d~Lq~lT~~LCy~y~r~t~sVSip~P~yYA~l~a~Rar~~~ 1018 (1073)
||||||+||+||+++++|+||+|||+|||+|+|||++||||+|+||||++|+|||+||
T Consensus 369 arPt~Y~vl~d~~~~~~d~lq~lt~~lc~~y~~~~~~vsip~p~~yA~~la~r~r~~~ 426 (426)
T cd04657 369 ARPTHYHVLWDEIGFTADELQTLTYNLCYTYARCTRSVSIPPPAYYAHLAAARARCYL 426 (426)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999999999999999999999996
No 5
>cd04658 Piwi_piwi-like_Euk Piwi_piwi-like_Euk: PIWI domain, Piwi-like subfamily found in eukaryotes. This domain is found in Piwi and closely related proteins, where it is believed to perform a crucial role in germline cells, via RNA silencing. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The mechanism in Piwi is believed to be similar to that in Argonaute, the central component of the RNA-induced silencing complex (RISC). The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing.
Probab=100.00 E-value=2.2e-96 Score=870.15 Aligned_cols=439 Identities=30% Similarity=0.476 Sum_probs=392.8
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHhccCCCC--ccccccCeEEcccceEEeeEEcCCCceeecCCCCccccCCccccee
Q 001469 535 QITALLKVTCQRPHERERDIMQTVHHNAYHED--PYAREFGIKISEKLASVEARILPAPWLKYHDTGKEKDCLPQVGQWN 612 (1073)
Q Consensus 535 q~~~mik~a~~~P~~R~~~I~~~~~~~~~~~~--~~l~~fGi~i~~~~~~v~gRvL~~P~i~y~~~~~~~~~~p~~G~Wn 612 (1073)
.|++|+++++.+|.+|++.|.++++.+.++.+ ++|++|||+|++++++|+||+|+||.|.|+++. ...+..++|+
T Consensus 2 ~m~~l~~~~~~~P~eR~~~i~~~~~~~~~~~~~~~~l~~~gi~i~~~~~~v~~rvL~~P~i~~~~~~---~~~~~~~~w~ 78 (448)
T cd04658 2 LMKELAEHTKLNPKERYDTIRQFIQRIQKNPSVQELLKKWGIELDSNPLKIQGRVLPPEQIIMGNVF---VYANSNADWK 78 (448)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCchHHHHHHCCeEEcCCceEEeeEEeCCCeEEeCCCc---cCCCCCCCcc
Confidence 47899999999999999999999988877665 589999999999999999999999999999742 1235678887
Q ss_pred c--cCceeeeCceeceeEEEEecCCcchHHHHHHHHHHHHHHHhcCcccCCCCcccCCCCChhhHHHHHHHHHHHHHhhc
Q 001469 613 M--MNKKMVNGGTVNHWICINFSRHVQDSIARGFCFELAQMCYISGMAFNPEPVIPPISARPEHVEKVLKTRYHDAMTKL 690 (1073)
Q Consensus 613 l--~~~kf~~~~~l~~W~vv~~~~~~~~~~~~~f~~~L~~~~~~~Gm~i~~~p~~~~~~~~~~~~~~~l~~~~~~a~~~~ 690 (1073)
+ .+.+|+.+..+++|+++++. .+.+.++.|++.|.+.|+.+||.+..+.++.+...+.+++.+.|++.+.
T Consensus 79 ~~~~~~~~~~~~~~~~W~vi~~~--~~~~~~~~f~~~l~~~~~~~G~~~~~P~~~~~~~~~~~~~~~~l~~~~~------ 150 (448)
T cd04658 79 REIRNQPLYDAVNLNNWVLIYPS--RDQREAESFLQTLKQVAGPMGIQISPPKIIKVKDDRIETYIRALKDAFR------ 150 (448)
T ss_pred hhhcCCcccCCcccCeEEEEEec--CCHHHHHHHHHHHHHHHHHcCCccCCCeEEEeCCCCHHHHHHHHHHhhc------
Confidence 5 46678999999999999875 3567899999999999999999998755554544445555555544332
Q ss_pred cCCCCceEEEEEeeCCCCcchhhhhHhhhcccCceeeeeeecccccc--chhHHHHHHHHHHhhcCccccccccccccCC
Q 001469 691 GQGKELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKM--SKQYMANVALKINVKVGGRNTVLVDAISRRI 768 (1073)
Q Consensus 691 ~~~~~~~lvlvilp~~~~~~Y~~IK~~~d~~~GI~TQcv~~~~~~k~--~~q~~~Nv~lKiN~KlGG~N~~l~~~~~~~~ 768 (1073)
.+++|+|||||+++.++|..||++|+.++||+||||..+++.+. ..+++.||+||||+||||+||.|+..
T Consensus 151 ---~~~~lvvvilp~~~~~~Y~~iK~~~~~~~gI~tQ~i~~~t~~~~~~~~~~~~ni~lkinaKlGG~~w~l~~~----- 222 (448)
T cd04658 151 ---SDPQLVVIILPGNKKDLYDAIKKFCCVECPVPSQVITSRTLKKKKNLRSIASKIALQINAKLGGIPWTVEIP----- 222 (448)
T ss_pred ---CCCcEEEEEECCCCchhHHHHHHHhhcccCcCCEEEehhhcccccccHHHHHHHHHHHHHHhCCcceEeccC-----
Confidence 46899999999988889999999999999999999999999764 56899999999999999999998753
Q ss_pred CccCCCCeEEEEEEecCCCCCCCCCCcEEEEEeeeCCCCccceeEEEEEccCChhh-hhhhhhcccCCCcccchhHHHHH
Q 001469 769 PLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQEL-IQDLFKTWQDPVRGAVSGGMIKE 847 (1073)
Q Consensus 769 p~~~~~~tmiiG~DVsHp~~g~~~~pSiaavVaS~d~~~~~~y~~~~~~Q~~~~E~-i~~l~~~~~~p~~~~~~~~mi~~ 847 (1073)
.....+|||||+||+||++. ..||++|+|||+| .++++|.+.++.|..++|+ +++| ++|+++
T Consensus 223 -~~~~~~tmiiGidv~h~~~~--~~~Si~a~vas~~-~~~~~~~~~~~~q~~~~e~~~~~l-------------~~~~~~ 285 (448)
T cd04658 223 -PFILKNTMIVGIDVYHDTIT--KKKSVVGFVASLN-KSITKWFSKYISQVRGQEEIIDSL-------------GKSMKK 285 (448)
T ss_pred -CCCCCCeEEEEEeeecCCCC--CCCcEEEEEEEcC-CCCceEeeEEEEeCCCceeeHHHH-------------HHHHHH
Confidence 13357899999999999873 4699999999999 9999999999999999998 8887 799999
Q ss_pred HHHHHHHHcCCCCceEEEEecCCChhHHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEEeecccccccccCCCCCCCCCC
Q 001469 848 LLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHHDRNAVDR 927 (1073)
Q Consensus 848 ~L~~f~~~~~~~P~~IIiyRDGVSEGQf~~Vl~~El~~I~~A~~~~~~~y~P~it~Ivv~KrHhtRff~~~~~~~~~~~~ 927 (1073)
+|+.|++.++.+|++|||||||||||||.+|+++|+++|++||.++..+|+|+||||+|+||||+|||+.+.. .
T Consensus 286 ~l~~y~~~~~~~P~~IiiyRdGvsegq~~~v~~~E~~~i~~a~~~~~~~~~p~it~ivv~Kr~~~Rff~~~~~------~ 359 (448)
T cd04658 286 ALKAYKKENKKLPSRIIIYRDGVGDGQLKKVKEYEVPQIKKAIKQYSENYSPKLAYIVVNKRINTRFFNQGGN------N 359 (448)
T ss_pred HHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEeccccceeecCCCC------C
Confidence 9999999999999999999999999999999999999999999998888999999999999999999997642 4
Q ss_pred CCCCcCceeecccccCCCccceeecccCCccccccCceEEEEecCCCCCHHHHHHHHHHhhcccccccCcccccchhHHH
Q 001469 928 SGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYA 1007 (1073)
Q Consensus 928 ~~N~~pGTVVD~~It~p~~~DFyL~Sh~~~qGTarPthY~Vl~De~~~~~d~Lq~lT~~LCy~y~r~t~sVSip~P~yYA 1007 (1073)
.+||+||||||++||||..|||||+||.++|||||||||+||+||+++++|+||+|||+|||+|+|||++||||+|+|||
T Consensus 360 ~~N~~~GTvVd~~it~p~~~dFyL~s~~~~qGtarP~~Y~Vl~d~~~~~~~~lq~lt~~lc~~y~~~~~~vs~P~p~~yA 439 (448)
T cd04658 360 FSNPPPGTVVDSEITKPEWYDFFLVSQSVRQGTVTPTHYNVLYDTTGLKPDHLQRLTYKLCHLYYNWSGSIRVPAPCQYA 439 (448)
T ss_pred CCCCCCCcEecccccCCCcccEEEeccccCccCCCCceEEEEECCCCCCHHHHHHHHHHhhhcccCCCCCCccCHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHh
Q 001469 1008 HLAAFRAR 1015 (1073)
Q Consensus 1008 ~l~a~Rar 1015 (1073)
|++|+|+.
T Consensus 440 ~~~a~~~g 447 (448)
T cd04658 440 HKLAFLVG 447 (448)
T ss_pred HHHHHHhc
Confidence 99999874
No 6
>cd02826 Piwi-like Piwi-like: PIWI domain. Domain found in proteins involved in RNA silencing. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The central component of the RNA-induced silencing complex (RISC) and related complexes is Argonaute. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing. This domain is also found in closely related proteins, including the Piwi subfamily, where it is believed to perform a crucial role in germline cells, via a similar mechanism.
Probab=100.00 E-value=1.8e-89 Score=796.92 Aligned_cols=384 Identities=32% Similarity=0.496 Sum_probs=337.5
Q ss_pred ceEEeeEEcCCCceeecCCCCccccCCcccceeccCceeeeCcee-ceeEEEEecCCcchHHHHHHHHHHHHHHHhcCcc
Q 001469 580 LASVEARILPAPWLKYHDTGKEKDCLPQVGQWNMMNKKMVNGGTV-NHWICINFSRHVQDSIARGFCFELAQMCYISGMA 658 (1073)
Q Consensus 580 ~~~v~gRvL~~P~i~y~~~~~~~~~~p~~G~Wnl~~~kf~~~~~l-~~W~vv~~~~~~~~~~~~~f~~~L~~~~~~~Gm~ 658 (1073)
+++|+|||||+|.|.|+++ |++++++|+.++.+ ++|+|+++.+ +..++|++.|.+.|+++||.
T Consensus 2 ~~~v~grvL~~p~i~~~~~------------w~~~~~~f~~~~~~~~~W~vi~~~~----~~~~~f~~~l~~~~~~~G~~ 65 (393)
T cd02826 2 PLILKGRVLPKPQILFKNK------------FLRNIGPFEKPAKITNPVAVIAFRN----EEVDDLVKRLADACRQLGMK 65 (393)
T ss_pred ceEEeeEecCCCceEecCC------------ccccCCeeCCCCEeCCeEEEEEccc----HHHHHHHHHHHHHHHhCCCc
Confidence 6789999999999999751 99999999999999 9999998853 23568999999999999999
Q ss_pred cCC-CCcccCCCC--ChhhHHHHHHHHHHHHHhhccCCCCceEEEEEeeCCCCcchhhhhHhhhcccCceeeeeeecccc
Q 001469 659 FNP-EPVIPPISA--RPEHVEKVLKTRYHDAMTKLGQGKELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVF 735 (1073)
Q Consensus 659 i~~-~p~~~~~~~--~~~~~~~~l~~~~~~a~~~~~~~~~~~lvlvilp~~~~~~Y~~IK~~~d~~~GI~TQcv~~~~~~ 735 (1073)
+.. ++...+... +.+++.+.| +++.+ .+++|||||+|+++.++|+.||++|+.+ ||+||||+.+++.
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-----~~~~lv~~ilp~~~~~~Y~~iK~~~~~~-gI~tQ~i~~~t~~ 135 (393)
T cd02826 66 IKEIPIVSWIEDLNNSFKDLKSVF----KNAIK-----AGVQLVIFILKEKKPPLHDEIKRLEAKS-DIPSQVIQLKTAK 135 (393)
T ss_pred cCCCCCcceeecccccHHHHHHHH----HHHhh-----cCCCEEEEEEcCCCccHHHHHHHHHhcc-CCceEEEehhhhc
Confidence 976 333222111 223344433 33322 4699999999999889999999999988 9999999999997
Q ss_pred c--cchhHHHHHHHHHHhhcCccccccccccccCCCccCCCCeEEEEEEecCCCCC-CCCCCcEEEEEeeeCCCCcccee
Q 001469 736 K--MSKQYMANVALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPG-EDSSPSIAAVVASQDWPEVTKYA 812 (1073)
Q Consensus 736 k--~~~q~~~Nv~lKiN~KlGG~N~~l~~~~~~~~p~~~~~~tmiiG~DVsHp~~g-~~~~pSiaavVaS~d~~~~~~y~ 812 (1073)
+ .+++|+.||+||||+||||+||.|+.. .+...+|||||+||+||+++ ....||++|+|||+| .+ +.+.
T Consensus 136 ~~~~~~~~~~Ni~lkin~KlGG~~~~l~~~------~~~~~~tmiiGiDv~h~~~~~~~~~~si~~~vas~~-~~-~~~g 207 (393)
T cd02826 136 KMRRLKQTLDNLLRKVNSKLGGINYILDSP------VKLFKSDIFIGFDVSHPDRRTVNGGPSAVGFAANLS-NH-TFLG 207 (393)
T ss_pred cccccHHHHHHHHHHHhhhhCCeeeEeccC------CCCCCCEEEEEEEeeCCCCCCCCCCCcEEEEEeecC-Cc-cccc
Confidence 6 678999999999999999999999753 12357899999999999886 345799999999999 65 4444
Q ss_pred EEEEEccCChhhhhhhhhcccCCCcccchhHHHHHHHHHHHHHcCC-CCceEEEEecCCChhHHHHHHHHHHHHHHHHHH
Q 001469 813 GLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISFRRATGQ-KPQRIIFYRDGVSEGQFYQVLLYELDAIRKACA 891 (1073)
Q Consensus 813 ~~~~~Q~~~~E~i~~l~~~~~~p~~~~~~~~mi~~~L~~f~~~~~~-~P~~IIiyRDGVSEGQf~~Vl~~El~~I~~A~~ 891 (1073)
+.++.|..++|++++| ++||+++|+.|+++++. +|++|||||||||||||++|+++|+++|++||.
T Consensus 208 ~~~~~~~~~~~~~~~l-------------~~~~~~~L~~y~~~~~~~~P~~IiiyRDGvsegq~~~v~~~e~~~i~~a~~ 274 (393)
T cd02826 208 GFLYVQPSREVKLQDL-------------GEVIKKCLDGFKKSTGEGLPEKIVIYRDGVSEGEFKRVKEEVEEIIKEACE 274 (393)
T ss_pred eEEEEecCccchHHHH-------------HHHHHHHHHHHHHHcCCCCcceeEEEecCCCHHHHHHHHHHHHHHHHHHHh
Confidence 5678898889999888 79999999999999999 999999999999999999999999999999999
Q ss_pred hhCCCCCCCEEEEEEeecccccccccCCCCCCCCCCCCCCcCceeecccccCCCccceeecccCCccccccCceEEEEec
Q 001469 892 SLEPNYQPPVTFVVVQKRHHTRLFANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWD 971 (1073)
Q Consensus 892 ~~~~~y~P~it~Ivv~KrHhtRff~~~~~~~~~~~~~~N~~pGTVVD~~It~p~~~DFyL~Sh~~~qGTarPthY~Vl~D 971 (1073)
++.+|+|+||||||+||||+|||+.+..+ ..+||+||||||++||||..+||||+||.++|||+||+||+||+|
T Consensus 275 -~~~~~~p~it~Ivv~Krh~~Rff~~~~~~-----~~~Np~~GTvVd~~it~p~~~dFyL~sh~~~qGT~rP~~Y~Vl~d 348 (393)
T cd02826 275 -IEESYRPKLVIIVVQKRHNTRFFPNEKNG-----GVQNPEPGTVVDHTITSPGLSEFYLASHVARQGTVKPTKYTVVFN 348 (393)
T ss_pred -hCCCCCCCEEEEEEeccccceeccCCCCC-----CCCCCCCceEeccccccCCcceEEEeccccCcCCCCCceEEEEEC
Confidence 77789999999999999999999976543 348999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHhhcccccccCcccccchhHHHHHHHHHHhh
Q 001469 972 ENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARF 1016 (1073)
Q Consensus 972 e~~~~~d~Lq~lT~~LCy~y~r~t~sVSip~P~yYA~l~a~Rar~ 1016 (1073)
|+++++|+||+|||+|||+|+|||++||||+||||||++|+|||.
T Consensus 349 ~~~~~~d~lq~lty~lc~~y~~~~~~vslP~p~~yA~~~a~r~rn 393 (393)
T cd02826 349 DKNWSLNELEILTYILCLTHQNVYSPISLPAPLYYAHKLAKRGRN 393 (393)
T ss_pred CCCCCHHHHHHHHHHHhhcccccCCCcccChHHHHHHHHHHhhcC
Confidence 999999999999999999999999999999999999999999984
No 7
>PF02171 Piwi: Piwi domain; InterPro: IPR003165 This domain is found in the stem cell self-renewal protein Piwi and its relatives in Drosophila melanogaster []. It has been found in the C-terminal of a number of proteins which also contain the PAZ domain (IPR003100 from INTERPRO) in their central region, for example the Argonaute proteins. Several of these proteins have been implicated in the development and maintenance of stem cells through the RNA-mediated gene-quelling mechanisms associated with the protein DICER. ; GO: 0005515 protein binding; PDB: 4F1N_B 3LUH_B 4EI1_A 3QX8_A 3LUC_C 3LUJ_B 3LUD_B 3QX9_A 3LUG_B 3LUK_B ....
Probab=100.00 E-value=2.3e-73 Score=642.67 Aligned_cols=299 Identities=47% Similarity=0.768 Sum_probs=269.2
Q ss_pred EEEEEeeCCCCcchhhhhHhhhcccCceeeeeeecccccc--chhHHHHHHHHHHhhcCccccccccccccCCCccCCCC
Q 001469 698 LLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKM--SKQYMANVALKINVKVGGRNTVLVDAISRRIPLVSDRP 775 (1073)
Q Consensus 698 lvlvilp~~~~~~Y~~IK~~~d~~~GI~TQcv~~~~~~k~--~~q~~~Nv~lKiN~KlGG~N~~l~~~~~~~~p~~~~~~ 775 (1073)
+||||||+++.+.|..||++|+.++||+||||..+++.+. ..+++.||+||||+||||+|+.+.+. +...++ .+
T Consensus 1 ~i~~ii~~~~~~~Y~~iKk~~~~~~gi~tQ~i~~~~~~~~~~~~~~~~ni~lkinaKlGG~n~~~~~~-~~~~~~---~~ 76 (302)
T PF02171_consen 1 LIVVIIPDKNSDNYHAIKKYLERKLGIPTQCILSKTLRKKNKSKQILNNIALKINAKLGGINPWLLDS-PPSIDL---KN 76 (302)
T ss_dssp -EEEEESSSSHHHHHHHHHHHHTTTTCEEEEEEHHHHHTSTHHHHHHHHHHHHHHHHTTTBSEEECSC-SSGSSE---SE
T ss_pred CEEEEEeCCChhHHHHHHHHHccCCCcccEEEccCcccccchHHHHHHHHHHHHHHhCCCeeeeeccc-cccccc---Cc
Confidence 5899999988889999999999999999999999999877 46999999999999999997544331 111111 68
Q ss_pred eEEEEEEecCCCCCCCCCCcEEEEEeeeCCCCccceeEEEEEccCChhhhhhhhhcccCCCcccchhHHHHHHHHHHHHH
Q 001469 776 TIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISFRRA 855 (1073)
Q Consensus 776 tmiiG~DVsHp~~g~~~~pSiaavVaS~d~~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~p~~~~~~~~mi~~~L~~f~~~ 855 (1073)
|||||+||+|+++.....||++|+|+|+| .+.++|.+.++.|..++|++++| ++|++++|+.|++.
T Consensus 77 ~miIGidv~h~~~~~~~~~sv~g~~~s~~-~~~~~~~~~~~~~~~~~e~~~~l-------------~~~~~~~L~~~~~~ 142 (302)
T PF02171_consen 77 TMIIGIDVSHPSPGSDKNPSVVGFVASFD-SDGSKYFSSVRFQDSGQEIIDNL-------------EEIIKEALKEFKKN 142 (302)
T ss_dssp EEEEEEEEEEESSTCTCSCEEEEEEEEES-TTTCEEEEEEEEECTTCCCHHHH-------------HHHHHHHHHHHHHT
T ss_pred eEEEEEEEEecCcccCCcceeeEEEEecc-CccccccceeEEeccchhhhcch-------------hhHHHHHHHHHHHH
Confidence 99999999999887656799999999999 99999999999999999999988 78999999999999
Q ss_pred cCC-CCceEEEEecCCChhHHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEEeecccccccccCCCCCCCCCCCCCCcCc
Q 001469 856 TGQ-KPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHHDRNAVDRSGNILPG 934 (1073)
Q Consensus 856 ~~~-~P~~IIiyRDGVSEGQf~~Vl~~El~~I~~A~~~~~~~y~P~it~Ivv~KrHhtRff~~~~~~~~~~~~~~N~~pG 934 (1073)
++. +|++|||||||||||||.+|+++|+++|++||+++..+|.|+||||+|+||||+|||+.+..+ ...||+||
T Consensus 143 ~~~~~P~~IiiyRdGvse~~~~~v~~~Ei~~i~~a~~~~~~~~~p~~~~i~v~K~~~~R~f~~~~~~-----~~~N~~~G 217 (302)
T PF02171_consen 143 NGKWLPERIIIYRDGVSEGQFKKVLEEEIEAIKEAIKELGEDYNPKITYIVVQKRHNTRFFPQNGRD-----GLQNPPPG 217 (302)
T ss_dssp TTT-TTSEEEEEEES--GGGHHHHHHHHHHHHHHHHHHHTHTTCTEEEEEEEESSSS--EEESSSEE-----TTTEECTT
T ss_pred cCCCCCceEEEEEcccCHHhhcccHHHHHHHHHHHHhhcccCCCCcEEEEEeeccccceEeeccccc-----ccCCCCCC
Confidence 997 999999999999999999999999999999999999899999999999999999999987642 57899999
Q ss_pred eeecccccCCCccceeecccCCccccccCceEEEEecCCCCCHHHHHHHHHHhhcccccccCcccccchhHHHHHHHHHH
Q 001469 935 TVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRA 1014 (1073)
Q Consensus 935 TVVD~~It~p~~~DFyL~Sh~~~qGTarPthY~Vl~De~~~~~d~Lq~lT~~LCy~y~r~t~sVSip~P~yYA~l~a~Ra 1014 (1073)
||||+.||+|..+||||+||.++|||+||+||+||+||+.++.|+||+|||+|||+|+||+++||+|+|+||||++|+|+
T Consensus 218 tvvd~~i~~~~~~~f~l~s~~~~~Gt~~P~~y~vl~~~~~~~~~~l~~~t~~L~~~~~~~~~~~~lP~p~~yA~~~a~~~ 297 (302)
T PF02171_consen 218 TVVDTGITSPNYFEFYLVSHTARQGTARPTHYTVLYDDSNLSMDELQQLTYSLCHLYQNSTGPISLPAPLYYAHKLAKRG 297 (302)
T ss_dssp EEESSEEEECSBEEEEEETSCCCSSSEEEEEEEEEEESSCSCHHHHHHHHHHHTTGGTTSSS--SS-HHHHHHHHHHHHH
T ss_pred eeeccceeeecceeeeeeecccccccccccEEEEecCcccccHHHHHHHHHHHHHHhcccCCCCccCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcC
Q 001469 1015 RFYME 1019 (1073)
Q Consensus 1015 r~~~~ 1019 (1073)
+.++.
T Consensus 298 ~~~~~ 302 (302)
T PF02171_consen 298 RNNLK 302 (302)
T ss_dssp HHHC-
T ss_pred HhhcC
Confidence 99863
No 8
>cd04659 Piwi_piwi-like_ProArk Piwi_piwi-like_ProArk: PIWI domain, Piwi-like subfamily found in Archaea and Bacteria. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The central component of the RNA-induced silencing complex (RISC) and related complexes is Argonaute. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing. This domain is also found in closely related proteins, including the Piwi subfamily, where it is believed to perform a crucial role in germline cells, via a similar mechanism.
Probab=100.00 E-value=5.2e-47 Score=443.60 Aligned_cols=275 Identities=24% Similarity=0.251 Sum_probs=225.0
Q ss_pred CCceEEEEEeeCCC------CcchhhhhHhhhcccCceeeeeeecccccc--chhHHHHHHHHHHhhcCccccccccccc
Q 001469 694 KELDLLIVILPDNN------GSLYGDLKRICETDLGLVSQCCLTKHVFKM--SKQYMANVALKINVKVGGRNTVLVDAIS 765 (1073)
Q Consensus 694 ~~~~lvlvilp~~~------~~~Y~~IK~~~d~~~GI~TQcv~~~~~~k~--~~q~~~Nv~lKiN~KlGG~N~~l~~~~~ 765 (1073)
..++++|||||++. .++|..||++| .+.||+||||..+|+.+. ..+++.||++|||+||||+||.|...
T Consensus 109 ~~~~~~lvilP~~~~~~~~~~~~Y~~iK~~~-~~~giptQ~v~~~tl~~~~~~~~~~~nial~i~aKlGG~pW~l~~~-- 185 (404)
T cd04659 109 QGVDVVIVVLPEDLKELPEEFDLYDRLKAKL-LRLGIPTQFVREDTLKNRQDLAYVAWNLALALYAKLGGIPWKLDAD-- 185 (404)
T ss_pred CCCCEEEEEeCHHHhhcccccCHHHHHHHHH-HhcCCceEEeeHHHcCccccHHHHHHHHHHHHHHhcCCCceEcccC--
Confidence 46899999999875 78999999997 689999999999999754 57899999999999999999999742
Q ss_pred cCCCccCCCCeEEEEEEecCCCCCCCCCCcEEEEEeeeCCCCccceeEEEEEccCChhhhhhhhhcccCCCcccchhHHH
Q 001469 766 RRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMI 845 (1073)
Q Consensus 766 ~~~p~~~~~~tmiiG~DVsHp~~g~~~~pSiaavVaS~d~~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~p~~~~~~~~mi 845 (1073)
...+|||||+||+|+..+....+++|+| .| .+. .+.+..+...++.+.+- ....+.+|+
T Consensus 186 ------~~~~~~iIGidv~~~~~~~~~~~~~a~v---f~-~~g---~g~~~~~~~~~~~~~~~--------~~~~~~~~l 244 (404)
T cd04659 186 ------SDPADLYIGIGFARSRDGEVRVTGCAQV---FD-SDG---LGLILRGAPIEEPTEDR--------SPADLKDLL 244 (404)
T ss_pred ------CCCCeEEEEEEEEEcCCCCEEEEEEEEE---Ec-CCC---CEEEEecCccCCccccc--------CHHHHHHHH
Confidence 2467999999999997653223455544 33 222 11222233333333210 001237899
Q ss_pred HHHHHHHHHHcCC-CCceEEEEecCCChhHHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEEeecccccccccCCCCCCC
Q 001469 846 KELLISFRRATGQ-KPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHHDRNA 924 (1073)
Q Consensus 846 ~~~L~~f~~~~~~-~P~~IIiyRDGVSEGQf~~Vl~~El~~I~~A~~~~~~~y~P~it~Ivv~KrHhtRff~~~~~~~~~ 924 (1073)
+++|+.|++.++. +|+||||||||+. .++|+++|++||.++. |+|+||+|+||||+|||+.+..+
T Consensus 245 ~~~l~~y~~~~~~~~P~rIiihrdg~~-------~~~E~~~i~~a~~~~~----~~i~~I~V~k~~~~R~f~~~~~~--- 310 (404)
T cd04659 245 KRVLEGYRESHRGRDPKRLVLHKDGRF-------TDEEIEGLKEALEELG----IKVDLVEVIKSGPHRLFRFGTYP--- 310 (404)
T ss_pred HHHHHHHHHHcCCCCCeEEEEECCCCC-------CHHHHHHHHHHHHhhC----ceEEEEEEEecCCcceEEecCCC---
Confidence 9999999999988 9999999999994 6999999999999874 89999999999999999976532
Q ss_pred CCCCCCCcCceeecccccCCCccceeecccCCc--------cccccCceEEEEecCCCCCHHHHHHHHHHhhcccccccC
Q 001469 925 VDRSGNILPGTVVDSKICHPTEFDFYLCSHAGI--------QGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTR 996 (1073)
Q Consensus 925 ~~~~~N~~pGTVVD~~It~p~~~DFyL~Sh~~~--------qGTarPthY~Vl~De~~~~~d~Lq~lT~~LCy~y~r~t~ 996 (1073)
...||++|||||.. .+||||++|... +||+||+| |++|+.+++.|+|+++||.||++|+|++.
T Consensus 311 --~~~np~~GT~v~~~-----~~~~~L~s~g~~~~~~~~~~~gtp~Pl~--v~~~~~~~~~~~l~~~~~~Lt~~~~n~~~ 381 (404)
T cd04659 311 --NGFPPRRGTYVKLS-----DDEGLLWTHGSVPKYNTYPGMGTPRPLL--LRRHSGNTDLEQLASQILGLTKLNWNSFQ 381 (404)
T ss_pred --CCCCCCCceEEEeC-----CCeEEEEecCCccccccCCCCCCCCcEE--EEEccCCCCHHHHHHHHHHHhhcCcCCCC
Confidence 12799999999964 599999999886 99999999 88899999999999999999999999988
Q ss_pred -cccccchhHHHHHHHHHHh
Q 001469 997 -SVSIVPPAYYAHLAAFRAR 1015 (1073)
Q Consensus 997 -sVSip~P~yYA~l~a~Rar 1015 (1073)
++++|+|+||||++|+...
T Consensus 382 ~~~~lP~ti~YA~~~a~~~~ 401 (404)
T cd04659 382 FYSRLPVTIHYADRVAKLLK 401 (404)
T ss_pred CCCCcceEEeHHHHHHHHHh
Confidence 9999999999999998754
No 9
>PF02170 PAZ: PAZ domain; InterPro: IPR003100 This domain is named after the proteins Piwi Argonaut and Zwille. It is also found in the CAF protein from Arabidopsis thaliana. The function of the domain is unknown but has been found in the middle region of a number of members of the Argonaute protein family, which also contain the Piwi domain (IPR003165 from INTERPRO) in their C-terminal region []. Several members of this family have been implicated in the development and maintenance of stem cells through the RNA-mediated gene-quelling mechanisms associated with the protein DICER. ; GO: 0005515 protein binding; PDB: 1R6Z_P 1T2R_A 1T2S_A 3MJ0_A 1VYN_A 3O3I_X 2L5C_A 3O6E_X 3O7V_X 2L5D_A ....
Probab=99.88 E-value=7.8e-23 Score=203.06 Aligned_cols=133 Identities=34% Similarity=0.609 Sum_probs=109.4
Q ss_pred ccHHHHHHHHhcCCCCCCCCChHHHHHHHHHhcCcEEEEeecCCccceEEEeccCCCCCCceeeeecCCCcEeeHHHHHH
Q 001469 409 LPVIDFVQQLLNRDVSSRPLSDADRVKIKKALRGVRVEVTHRGNMRRKYRISGLTSQTTGELTFPVDESGTLKSVVEYFY 488 (1073)
Q Consensus 409 ~~l~d~~~~~~~~~~~~~~~~~~~~~~l~~~L~gl~V~~~~~~~~~r~~~I~~i~~~~a~~~~F~~~~~g~~isV~~Yf~ 488 (1073)
++|+|+|.++.+.... .......+++++|+|++|.++|++. .+.|+|.+|++..+++.+|+.+ +|+.+||+|||+
T Consensus 1 ~~vld~~~~~~~~~~~---~~~~~~~~~~~~lkg~~V~~~~~~~-~r~~~I~~i~~~~~~~~~F~~~-~g~~itv~eYf~ 75 (135)
T PF02170_consen 1 QSVLDFLKEIQNFRQR---NNIKFQKKLERALKGLKVTTTYNNN-KRTYKIKGISFDPAPESTFPDN-DGKEITVAEYFK 75 (135)
T ss_dssp HHHHHHHHHHCTCSSH---HHHHHHHHHHHHHTTEEEEETTTTC-CEEEEEEEEEEEETTTSEEEET-TSEEEEHHHHHH
T ss_pred CcHHHHHHHHHhhhcc---cchHHHHHHHHHcCCcEEEEecCCC-ceEEEEeEEECCCCcceeeecC-CCceEEhHHHHH
Confidence 4799999998764321 1122344589999999999999843 3899999999999999999865 488999999999
Q ss_pred HHcCCccCCCCCcEEEeccCCc--cccccccceEeccCccccccCCHHHHHHHHHHhcCC
Q 001469 489 ETYGFVIQHTQWPCLQVGNQQR--PNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQR 546 (1073)
Q Consensus 489 ~~Y~i~L~~p~lP~v~vg~~~~--~~ylP~Elc~i~~gQ~~~~kl~~~q~~~mik~a~~~ 546 (1073)
++||++|+||+||||+++...+ ++|||||||.|+++|++..++...+++.|++++|.+
T Consensus 76 ~~Y~i~L~~p~~Pll~~~~~~~~~~~~lP~Elc~i~~~q~~~~~~~~~~~s~m~r~~~~~ 135 (135)
T PF02170_consen 76 EKYNIRLKYPDLPLLNVKSKKKKQPIYLPPELCFIVPGQRYKKKLFTCQPSIMIRFACSP 135 (135)
T ss_dssp HTCT---SSTTSEEEEECSTTTTTCEEEECCGEEEETTTBB-SS--HHHHHHHHHHHSS-
T ss_pred hhhhcccccCCCCeEEeccCCCCceEEEChhHhcccCCcHHHHhccHHHHHHHHHHHhcC
Confidence 9999999999999999998777 999999999999999999999999999999999864
No 10
>cd02846 PAZ_argonaute_like PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes.
Probab=99.84 E-value=1.8e-20 Score=180.64 Aligned_cols=113 Identities=49% Similarity=0.879 Sum_probs=98.7
Q ss_pred ccHHHHHHHHhcCCCCCCCCChHHHHHHHHHhcCcEEEEeecCCccceEEEeccCCCCCCceeeeecCCCcEeeHHHHHH
Q 001469 409 LPVIDFVQQLLNRDVSSRPLSDADRVKIKKALRGVRVEVTHRGNMRRKYRISGLTSQTTGELTFPVDESGTLKSVVEYFY 488 (1073)
Q Consensus 409 ~~l~d~~~~~~~~~~~~~~~~~~~~~~l~~~L~gl~V~~~~~~~~~r~~~I~~i~~~~a~~~~F~~~~~g~~isV~~Yf~ 488 (1073)
++|+|+++++++..... .+++.++.+++++|+|++|.++|++...|.|+|.+|++.++.+.+|+.++.+++|||+|||+
T Consensus 2 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~lkgl~v~~~~~~~~~r~~~i~~l~~~~~~~~~F~~~~~~~~isV~dYf~ 80 (114)
T cd02846 2 QPVIEFLKEFLGFDTPL-GLSDNDRRKLKKALKGLKVEVTHRGNTNRKYKIKGLSAEPASQQTFELKDGEKEISVADYFK 80 (114)
T ss_pred ccHHHHHHHHhCccccc-ccchHHHHHHHHHhCCCEEEEEcCCCCCceEEEeeccCCCccceEEEcCCCCcEEEHHHHHH
Confidence 68999999998754322 45667888999999999999999865578999999999998899998654335899999999
Q ss_pred HHcCCccCCCCCcEEEeccCCccccccccceEec
Q 001469 489 ETYGFVIQHTQWPCLQVGNQQRPNYLPMEVCKIV 522 (1073)
Q Consensus 489 ~~Y~i~L~~p~lP~v~vg~~~~~~ylP~Elc~i~ 522 (1073)
++||++|+||+||||++|+..+++|+|||||.|+
T Consensus 81 ~~y~~~l~~p~lP~v~~g~~~~~~~~P~Elc~i~ 114 (114)
T cd02846 81 EKYNIRLKYPNLPCLQVGRKGKPNYLPMELCNIV 114 (114)
T ss_pred HHcCCcccCCCCCEEEeCCCCCCcEecceeEEeC
Confidence 9999999999999999999888999999999984
No 11
>cd02825 PAZ PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the piwi and Dicer families. PAZ functions as a nucleic-acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes. This parent model also contains structures of an archaeal PAZ domain.
Probab=99.82 E-value=5.4e-20 Score=177.07 Aligned_cols=112 Identities=29% Similarity=0.430 Sum_probs=97.9
Q ss_pred CccHHHHHHHHhcCCCCCCCCChHHHHHHHHHhcCcEEEEeecCCccceEEEeccCCCCCCceeeeecCCCcEeeHHHHH
Q 001469 408 PLPVIDFVQQLLNRDVSSRPLSDADRVKIKKALRGVRVEVTHRGNMRRKYRISGLTSQTTGELTFPVDESGTLKSVVEYF 487 (1073)
Q Consensus 408 ~~~l~d~~~~~~~~~~~~~~~~~~~~~~l~~~L~gl~V~~~~~~~~~r~~~I~~i~~~~a~~~~F~~~~~g~~isV~~Yf 487 (1073)
.++|+|+++++++.+...+.+.+.++.++.++|+|++|.++|++ .++.|+|.+|++.++.+. |.. .+|+++||+|||
T Consensus 1 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkg~~V~~~h~~-~~r~y~i~~i~~~~a~~~-f~~-~~~~~isv~dYf 77 (115)
T cd02825 1 ADPVIETMCKFPKDREIDTPLLDSPREEFTKELKGLKVEDTHNP-LNRVYRPDGETRLKAPSQ-LKH-SDGKEITFADYF 77 (115)
T ss_pred CccHHHHHHHHhcccccccccchHHHHHHHHHcCCCEEEEecCC-CceEEEEeeEECCCChhh-eec-CCCCEEEHHHHH
Confidence 36899999999876554456777788899999999999999984 468999999999998888 763 347789999999
Q ss_pred HHHcCCccCCCCCcEEEeccC---CccccccccceEec
Q 001469 488 YETYGFVIQHTQWPCLQVGNQ---QRPNYLPMEVCKIV 522 (1073)
Q Consensus 488 ~~~Y~i~L~~p~lP~v~vg~~---~~~~ylP~Elc~i~ 522 (1073)
+++||++|+||+||||++|+. .+++|||||||.|.
T Consensus 78 ~~kY~~~l~~p~~Pll~~~~~~~~~~~~~lp~Elc~i~ 115 (115)
T cd02825 78 KERYNLTLTDLNQPLLIVKFSSKKSYSILLPPELCVIT 115 (115)
T ss_pred HHHcCCcccCCCCCEEEecCcccCCCceEEchheEEeC
Confidence 999999999999999999987 67899999999974
No 12
>cd02845 PAZ_piwi_like PAZ domain, Piwi_like subfamily. In multi-cellular organisms, the Piwi protein appears to be essential for the maintenance of germline stem cells. In the Drosophila male germline, Piwi was shown to be involved in the silencing of retrotransposons in the male gametes. The Piwi proteins share their domain architecture with other members of the argonaute family. The PAZ domain has been named after the proteins Piwi, Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might
Probab=99.72 E-value=1.2e-17 Score=160.44 Aligned_cols=106 Identities=26% Similarity=0.388 Sum_probs=90.5
Q ss_pred ccHHHHHHHHhcCCCCCCCCChHHHHHHHHHhcCcEEEEeecCCccceEEEeccCCCCCCceeeeecCCCcEeeHHHHHH
Q 001469 409 LPVIDFVQQLLNRDVSSRPLSDADRVKIKKALRGVRVEVTHRGNMRRKYRISGLTSQTTGELTFPVDESGTLKSVVEYFY 488 (1073)
Q Consensus 409 ~~l~d~~~~~~~~~~~~~~~~~~~~~~l~~~L~gl~V~~~~~~~~~r~~~I~~i~~~~a~~~~F~~~~~g~~isV~~Yf~ 488 (1073)
.+++|++.++++... ....+.++++.|+|++|.++|+ ++.|+|.+|+++.++.++|+.. ++..+||+|||+
T Consensus 2 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~g~~V~t~yn---~k~Y~I~~I~~~~~p~s~F~~~-~~~~~S~~~Yy~ 72 (117)
T cd02845 2 TTVLDRMHKLYRQET-----DERFREECEKELIGSIVLTRYN---NKTYRIDDIDFDKTPLSTFKKS-DGTEITFVEYYK 72 (117)
T ss_pred eeHHHHHHHHHHhcc-----cHHHHHHHHHHcCCCEEEEeeC---CeEEEEeEecCCCCccccCcCC-CCCeeeHHHHHH
Confidence 478999999876421 1256788999999999999996 6899999999999999999743 345799999999
Q ss_pred HHcCCccCCCCCcEEEeccCC--------ccccccccceEecc
Q 001469 489 ETYGFVIQHTQWPCLQVGNQQ--------RPNYLPMEVCKIVE 523 (1073)
Q Consensus 489 ~~Y~i~L~~p~lP~v~vg~~~--------~~~ylP~Elc~i~~ 523 (1073)
++||+.|+||+||||+++.++ +++|||||||.++.
T Consensus 73 ~kY~i~I~~~~qPLL~~~~k~~~~~~~~~~~iyL~pElC~ltg 115 (117)
T cd02845 73 KQYNIEITDLNQPLLVSRPKRRDPRGGEKEPIYLIPELCFLTG 115 (117)
T ss_pred HHcCCccccCCCCcEEeeccccccCCCCCcEEEEchHHhhhcC
Confidence 999999999999999998643 47999999999873
No 13
>PF08699 DUF1785: Domain of unknown function (DUF1785); InterPro: IPR014811 This region is found in argonaute [] proteins and often co-occurs with IPR003103 from INTERPRO and IPR003165 from INTERPRO. ; PDB: 1R6Z_P 3MJ0_A 4EI1_A 4F3T_A 4EI3_A 1R4K_A.
Probab=99.48 E-value=1.3e-14 Score=117.93 Aligned_cols=52 Identities=62% Similarity=1.081 Sum_probs=42.1
Q ss_pred ccccccccCCCCCCcccCCCCeEEEecceeeeeccCCceEEeeecceeeEecC
Q 001469 356 CPVGRSFYSPDLGRRQPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEP 408 (1073)
Q Consensus 356 ~~~gr~ff~~~~~~~~~lg~Gle~~~G~~~Svr~~~~~l~LniDvs~~~F~~~ 408 (1073)
+.+||+||+++.. ..+|++|+|+|+||||||||++++|+||||+++++||++
T Consensus 1 ~~vgrsFF~~~~~-~~~l~~Gle~~rG~~qSvRp~~~~l~lNvDvs~~aF~~p 52 (52)
T PF08699_consen 1 TAVGRSFFPPSGG-PVDLGGGLEAWRGFFQSVRPTQGGLLLNVDVSHTAFYKP 52 (52)
T ss_dssp EEETTEEEE-------EEETTEEEEEEEEEEEEEETTEEEEEEECCEECCC--
T ss_pred CccccccCCCCCC-CccCCCcEEEeEeEEeeeEEcCCCCEEEEeCceeeEECc
Confidence 3689999987643 368999999999999999999999999999999999975
No 14
>cd02844 PAZ_CAF_like PAZ domain, CAF_like subfamily. CAF (for carpel factory) is a plant homolog of Dicer. CAF has been implicated in flower morphogenesis and in early Arabidopsis development and might function through posttranscriptional regulation of specific mRNA molecules. PAZ domains are named after the proteins Piwi, Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic-acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes.
Probab=99.42 E-value=1.9e-13 Score=134.14 Aligned_cols=84 Identities=31% Similarity=0.532 Sum_probs=71.2
Q ss_pred HHHHhcCcEEEEeecCCccceEEEeccCCCCCCceeeeecCCCcEeeHHHHHHHHcCCccCCCCCcEEEecc--------
Q 001469 436 IKKALRGVRVEVTHRGNMRRKYRISGLTSQTTGELTFPVDESGTLKSVVEYFYETYGFVIQHTQWPCLQVGN-------- 507 (1073)
Q Consensus 436 l~~~L~gl~V~~~~~~~~~r~~~I~~i~~~~a~~~~F~~~~~g~~isV~~Yf~~~Y~i~L~~p~lP~v~vg~-------- 507 (1073)
..+.|+|++|.++|+ +|.|+|.+|+ +.+++++|+.+++++.+||+|||+++|||+|+||+||||++..
T Consensus 27 ~~~~l~g~~V~t~hn---~r~Y~I~~i~-~~~p~s~F~~~~~~~~~Sy~eYy~~kY~i~L~~~~QPLL~~~~~~~~~NlL 102 (135)
T cd02844 27 CACDLKGSVVTAPHN---GRFYVISGIL-DLNANSSFPGKEGLGYATYAEYFKEKYGIVLNHPNQPLLKGKQIFNLHNLL 102 (135)
T ss_pred cHHHhcCCEEEEcCC---CcEEEEEEEc-CCCccCcccCCCCCceeeHHHHHHHHhCceeccCCcceEEEecccccceec
Confidence 467899999999997 7899999999 8899999986553367999999999999999999999999751
Q ss_pred ------------CCc---cccccccceEecc
Q 001469 508 ------------QQR---PNYLPMEVCKIVE 523 (1073)
Q Consensus 508 ------------~~~---~~ylP~Elc~i~~ 523 (1073)
+.+ .++||||||.+.+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~v~L~PELC~~~~ 133 (135)
T cd02844 103 HNRFEEKGESEEKEKDRYFVELPPELCSVID 133 (135)
T ss_pred ccccccccccccccccceEEEeChHHhcccc
Confidence 011 4699999998863
No 15
>PF12764 Gly-rich_Ago1: Glycine-rich region of argonaut; InterPro: IPR024357 This domain is found in the N terminus of some argonaut proteins. Argonaut (AGO) proteins are involved in RNA-mediated post-transcriptional gene silencing [].
Probab=99.25 E-value=2.3e-11 Score=108.53 Aligned_cols=100 Identities=63% Similarity=1.012 Sum_probs=71.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCcccCCCCCCCC
Q 001469 86 GTSEYQGRGRGGPPQPGGRGGYGGGRGGVGMGSGGRGGHSGGPTRSSQIPELHQATPTPFSSGVMTQPTQSQAGSSSHSP 165 (1073)
Q Consensus 86 g~~~~~g~g~g~~~~~gg~g~~~gg~~g~g~~~~g~g~~~~~~~~~~~~~~~~qa~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (1073)
|+..|+|+|+|++...||+++|+||++|+ +...|+...+.+++||||++++++++.++++++.+++++++++
T Consensus 2 gp~eYqgrGRGgp~~qgG~~~yGggrgg~--------~ps~G~p~r~~~PELHQAt~~~yQa~v~~qp~pSea~sss~p~ 73 (104)
T PF12764_consen 2 GPPEYQGRGRGGPPQQGGRPGYGGGRGGG--------GPSGGGPPRPSVPELHQATQVQYQAPVSSQPSPSEASSSSQPP 73 (104)
T ss_pred CCccccccCCCCCcccCCCCCCCCCCCCC--------CCCCCCCcCCCcchhhcccCCcccCcccCCCCcCcCCCccCCC
Confidence 34557777777666556565554333322 1112234456789999999999999999888888888888886
Q ss_pred cchh--hhhhhhcccCCcccCCCCccCCCC
Q 001469 166 ELSE--VSQQFQQLSLPEEVSSSQVIQPAP 193 (1073)
Q Consensus 166 ~~~~--~~~~~~~~~~~~~~s~~~~~~~~p 193 (1073)
++.. ++++|++|.+..++++.+++.+.|
T Consensus 74 e~s~~qv~QQfqqLsi~~e~s~sQaiQp~P 103 (104)
T PF12764_consen 74 EPSTVQVTQQFQQLSIQQESSPSQAIQPAP 103 (104)
T ss_pred CcchHHHHHHHHHHhhccCCCcccccCCCC
Confidence 6655 699999999988877777776544
No 16
>COG1431 Argonaute homolog, implicated in RNA metabolism [Translation, ribosomal structure and biogenesis]
Probab=99.06 E-value=4.7e-09 Score=120.34 Aligned_cols=299 Identities=19% Similarity=0.170 Sum_probs=176.6
Q ss_pred HHHHHHHHHHHHHHHhcC-cccCCC-CcccCCCCChhhHHHHHHHHHHHHHhhccCCCCceEEEEEeeCCCCcchhhhhH
Q 001469 639 SIARGFCFELAQMCYISG-MAFNPE-PVIPPISARPEHVEKVLKTRYHDAMTKLGQGKELDLLIVILPDNNGSLYGDLKR 716 (1073)
Q Consensus 639 ~~~~~f~~~L~~~~~~~G-m~i~~~-p~~~~~~~~~~~~~~~l~~~~~~a~~~~~~~~~~~lvlvilp~~~~~~Y~~IK~ 716 (1073)
..+..|.+.+....+..+ +...-. +-+.....++.. ...|..+.+++ ....++..-+-++...|+.+|+
T Consensus 356 ~rlk~~~kkv~~~fkn~n~i~~k~eg~~l~~a~~r~~~-kddl~~iIkei--------d~ee~~k~e~ykdd~~YailKr 426 (685)
T COG1431 356 TRLKSTIKKVVYGFKNSNGIDWKVEGLTLHVAGKRPKM-KDDLTKIIKEI--------DVEELKKQEMYKDDVKYAILKR 426 (685)
T ss_pred hHHHHHHHHHHHHHHhccchhhhcccceeeecccchhh-hccchhhhhhh--------hhhhhccccccccchHHHHHHh
Confidence 457788899998888776 443211 222222222211 12233333322 0122333344556678999998
Q ss_pred hhhcccCceeeeeeeccccccchhHHHHHHHHHHhhcCccccccccccccCCCccCCCCeEEEEEEecCCCCCCCCCCcE
Q 001469 717 ICETDLGLVSQCCLTKHVFKMSKQYMANVALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSPSI 796 (1073)
Q Consensus 717 ~~d~~~GI~TQcv~~~~~~k~~~q~~~Nv~lKiN~KlGG~N~~l~~~~~~~~p~~~~~~tmiiG~DVsHp~~g~~~~pSi 796 (1073)
.+.-|++|.++-.+..|.-+-++.|+|+|+-||-+|+++.+.+. ...-+-|+|+||+.-+-+. -.+
T Consensus 427 ---ld~~ipsqvil~~n~rk~~Kg~~tnla~~~~~ktlgqpY~~r~~--------~gpvDaivGlDvsr~~~gn---~tV 492 (685)
T COG1431 427 ---LDETIPSQVILDPNNRKPYKGTKTNLASKRYLKTLGQPYLKRNG--------LGPVDAIVGLDVSRVSEGN---WTV 492 (685)
T ss_pred ---hcccCcceeeeccccCCcchhhhhHHHHHHHHHhcCCceeeecc--------CCCccceeeeeeeEEeeCC---eEE
Confidence 45679999999998887778899999999999999999977542 1223589999999876332 234
Q ss_pred EEEEeeeCC-CCccceeEEEEEccCChhhhhhhhhcccCCCcccchhHHHHHHHHHHHH--HcC-CCCceEEEEecCCCh
Q 001469 797 AAVVASQDW-PEVTKYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISFRR--ATG-QKPQRIIFYRDGVSE 872 (1073)
Q Consensus 797 aavVaS~d~-~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~p~~~~~~~~mi~~~L~~f~~--~~~-~~P~~IIiyRDGVSE 872 (1073)
-|++...|- ..+..|.-... +. +++.+....+-+.+ ..+ ..-.+|++.|||-
T Consensus 493 ~gct~~f~seg~l~eyy~t~t------pa----------------~GErl~~~g~yle~~~~~gfe~~n~iV~lRDG~-- 548 (685)
T COG1431 493 EGCTSCFVSEGGLEEYYHTVT------PA----------------LGERLETSGRYLEKMNWRGFESRNLIVTLRDGK-- 548 (685)
T ss_pred eeeeEEEeccCceEEeeeccc------CC----------------ccchhhhHHHHHHHHHhhhhhccCeeEEEecCc--
Confidence 443332330 12222221111 00 01111111111111 112 2346799999994
Q ss_pred hHHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEEeecccccccccCCCCCCCCCCCCCCcCceeec------ccccCCCc
Q 001469 873 GQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHHDRNAVDRSGNILPGTVVD------SKICHPTE 946 (1073)
Q Consensus 873 GQf~~Vl~~El~~I~~A~~~~~~~y~P~it~Ivv~KrHhtRff~~~~~~~~~~~~~~N~~pGTVVD------~~It~p~~ 946 (1073)
+...|+.++++.=..+ .-.++++.+-|. +-+||..+..- + |..|- +.+|.|.
T Consensus 549 -----l~~~E~aavkeyg~el----gsn~ev~~i~kn-Np~vf~~e~~i-------~----g~f~~~~~s~~h~~~~~y- 606 (685)
T COG1431 549 -----LVAGEIAAVKEYGGEL----GSNPEVNRILKN-NPWVFAIEGEI-------W----GAFVRLDGSTVHLCCSPY- 606 (685)
T ss_pred -----cchHHHHHHHHHhhhc----CCChhhheeccc-CCeEEEeccee-------e----eEEEecCCcccccccCCC-
Confidence 5577887777765544 345566666554 55599876421 1 33333 3333332
Q ss_pred cceeecccCCccccccCceEEEEecCCCCCHHHHHHHHHHhhcccccccCc--ccccchhHHHHHHHHHHhh
Q 001469 947 FDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRS--VSIVPPAYYAHLAAFRARF 1016 (1073)
Q Consensus 947 ~DFyL~Sh~~~qGTarPthY~Vl~De~~~~~d~Lq~lT~~LCy~y~r~t~s--VSip~P~yYA~l~a~Rar~ 1016 (1073)
.....||-+|..-- .+-+.-..++-.|.|+|+-|.+-+... .+||||++|||++.+.||.
T Consensus 607 -------npv~~gT~~pi~~r---~~~g~l~~e~i~lv~dLT~mNys~~~g~~~rlPApvhYaDk~~kl~~~ 668 (685)
T COG1431 607 -------NPVRRGTPRPIALR---RRDGKLDGELIGLVHDLTAMNYSNPSGTWSRLPAPVHYADKASKLARY 668 (685)
T ss_pred -------CceecCCCcccccc---cccCccchhhHHHHHHhhhhccCCCCCceecCCcchhhhHHHHHHHhc
Confidence 23556888886632 333333344444999999998888777 9999999999999999886
No 17
>cd02843 PAZ_dicer_like PAZ domain, dicer_like subfamily. Dicer is an RNAse involved in cleaving dsRNA in the RNA interference pathway. It generates dsRNAs which are approximately 20 bp long (siRNAs), which in turn target hydrolysis of homologous RNAs. PAZ domains are named after the proteins Piwi Argonaut and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the piwi and Dicer families. PAZ functions as a nucleic-acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes.
Probab=98.46 E-value=2.4e-07 Score=88.06 Aligned_cols=67 Identities=18% Similarity=0.241 Sum_probs=58.6
Q ss_pred HHhcCcEEEEeecCCc-cceEEEeccCCCCCCceeeeecCCCcEeeHHHHHHHHcCCccCCCCCcEEEecc
Q 001469 438 KALRGVRVEVTHRGNM-RRKYRISGLTSQTTGELTFPVDESGTLKSVVEYFYETYGFVIQHTQWPCLQVGN 507 (1073)
Q Consensus 438 ~~L~gl~V~~~~~~~~-~r~~~I~~i~~~~a~~~~F~~~~~g~~isV~~Yf~~~Y~i~L~~p~lP~v~vg~ 507 (1073)
+.+.|..|.+.|++.. .++|+|.+|.++.++.++|+.+ + .+|++|||++||||.|++++||+|.|..
T Consensus 39 ~~~~g~vV~t~YnN~d~pK~Y~V~dI~~dltP~S~F~~~--~-~~Ty~eYyk~KY~I~I~~~~QPLL~v~~ 106 (122)
T cd02843 39 EDYQDAVVMPWYRNFDQPQYFYVAEICTDLRPLSKFPGP--E-YETFEEYYKKKYKLDIQNLNQPLLDVDH 106 (122)
T ss_pred HHhCCCEEeecccCCCCCeEEEEEEEcCCCCCCCCCCCC--C-CccHHHHHHHhcCeEeccCCCCcEeecC
Confidence 5789999999998422 3899999999999999999743 3 6999999999999999999999999964
No 18
>PF12764 Gly-rich_Ago1: Glycine-rich region of argonaut; InterPro: IPR024357 This domain is found in the N terminus of some argonaut proteins. Argonaut (AGO) proteins are involved in RNA-mediated post-transcriptional gene silencing [].
Probab=96.93 E-value=0.00092 Score=60.64 Aligned_cols=50 Identities=16% Similarity=0.184 Sum_probs=37.4
Q ss_pred CCCCCCCCCCCccccC----CCCCCCCCCCCCCCcccCCCCCCCCcchhhhhhh
Q 001469 125 SGGPTRSSQIPELHQA----TPTPFSSGVMTQPTQSQAGSSSHSPELSEVSQQF 174 (1073)
Q Consensus 125 ~~~~~~~~~~~~~~qa----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (1073)
...+++|+|...+||| .+.|..+.+++.++++.+.+++++++++++.++.
T Consensus 40 ~~~PELHQAt~~~yQa~v~~qp~pSea~sss~p~e~s~~qv~QQfqqLsi~~e~ 93 (104)
T PF12764_consen 40 PSVPELHQATQVQYQAPVSSQPSPSEASSSSQPPEPSTVQVTQQFQQLSIQQES 93 (104)
T ss_pred CCcchhhcccCCcccCcccCCCCcCcCCCccCCCCcchHHHHHHHHHHhhccCC
Confidence 3458999999999999 3555556666666666666678889999987654
No 19
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=94.20 E-value=0.18 Score=53.57 Aligned_cols=10 Identities=0% Similarity=0.537 Sum_probs=4.2
Q ss_pred CcEEEEEEEE
Q 001469 306 EREFKVVIKL 315 (1073)
Q Consensus 306 ~~~~~v~i~~ 315 (1073)
+..|+..+-.
T Consensus 217 P~KYRmlVgm 226 (317)
T KOG1596|consen 217 PAKYRMLVGM 226 (317)
T ss_pred chheeeeeee
Confidence 3344444433
No 20
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=93.90 E-value=0.22 Score=53.00 Aligned_cols=6 Identities=17% Similarity=0.296 Sum_probs=2.6
Q ss_pred EEEEEE
Q 001469 308 EFKVVI 313 (1073)
Q Consensus 308 ~~~v~i 313 (1073)
.|-|.+
T Consensus 184 VYAVEf 189 (317)
T KOG1596|consen 184 VYAVEF 189 (317)
T ss_pred EEEEEe
Confidence 444443
No 21
>PF13032 DUF3893: Domain of unknown function (DUF3893)
Probab=88.14 E-value=0.86 Score=45.42 Aligned_cols=56 Identities=18% Similarity=0.164 Sum_probs=46.2
Q ss_pred ccCceEEEEecCCCCCHHHHHHHHHHhhcccccccCcccccchhHHHHHHHHHHhhhcCc
Q 001469 961 SRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEP 1020 (1073)
Q Consensus 961 arPthY~Vl~De~~~~~d~Lq~lT~~LCy~y~r~t~sVSip~P~yYA~l~a~Rar~~~~~ 1020 (1073)
....=.+|+.=...-.+++|-.|||.||+.+.-+-..+.+|-|+++|.+ ++.|+-+
T Consensus 67 ~~ilEI~V~~~~~~d~~~~lA~~vh~LR~~~~~~~~~l~lP~PLHlak~----~~eYi~~ 122 (138)
T PF13032_consen 67 PQILEITVLGCQPEDDPEALAKLVHYLRRSPPLYDENLALPLPLHLAKQ----AKEYILP 122 (138)
T ss_pred CCceEEEEeccCCCCCHHHHHHHHHHHHhCcccccccccCcccHHHHHH----HHHHccc
Confidence 4445577777666678999999999999999999999999999999987 4567665
No 22
>COG4371 Predicted membrane protein [Function unknown]
Probab=85.42 E-value=1.4 Score=46.89 Aligned_cols=16 Identities=19% Similarity=0.395 Sum_probs=9.3
Q ss_pred CcchhhhhhhhcccCC
Q 001469 165 PELSEVSQQFQQLSLP 180 (1073)
Q Consensus 165 ~~~~~~~~~~~~~~~~ 180 (1073)
+++-.+..++.+++.+
T Consensus 155 A~a~elk~eL~~iA~~ 170 (334)
T COG4371 155 AEADELKSELQRIAQQ 170 (334)
T ss_pred hhhHHHHHHHHHHHHh
Confidence 5555566666666544
No 23
>smart00157 PRP Major prion protein. The prion protein is a major component of scrapie-associated fibrils in Creutzfeldt-Jakob disease, kuru, Gerstmann-Straussler syndrome and bovine spongiform encephalopathy.
Probab=80.70 E-value=9.4 Score=39.21 Aligned_cols=11 Identities=27% Similarity=0.283 Sum_probs=6.6
Q ss_pred CCceeeeeEEE
Q 001469 227 DKDLHQYDVTI 237 (1073)
Q Consensus 227 ~~~iy~YdV~i 237 (1073)
+.+|-+|.|+-
T Consensus 158 N~tv~~~~~~~ 168 (217)
T smart00157 158 NITIKQHTVTT 168 (217)
T ss_pred hhheeeeEecc
Confidence 44566777653
No 24
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=78.67 E-value=27 Score=42.85 Aligned_cols=12 Identities=17% Similarity=0.445 Sum_probs=7.8
Q ss_pred eEEeeeEEeecC
Q 001469 215 IVKANHFFAELP 226 (1073)
Q Consensus 215 ~l~tN~f~v~~~ 226 (1073)
.|.+|-|+.++.
T Consensus 869 V~~~~n~Pf~v~ 880 (944)
T KOG4307|consen 869 VLSCNNFPFDVT 880 (944)
T ss_pred EEEecCCCcccc
Confidence 677777775543
No 25
>PF08459 UvrC_HhH_N: UvrC Helix-hairpin-helix N-terminal; InterPro: IPR001162 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []. The UvrC proteins contain 4 conserved regions: a central region which interacts with UvrB (Uvr domain), a Helix hairpin Helix (HhH) domain important for 5 prime incision of damage DNA and the homology regions 1 and 2 of unknown function. UvrC homology region 2 is specific for UvrC proteins, whereas UvrC homology region 1 is also shared by few other nucleases. Proteins that contain the UvrC homology region 1, IPR000305 from INTERPRO, are listed below: Prokaryotic UvrC proteins. Bacteriophage T4 END2 protein. Small subunit of ribonucleotide reductase enzyme. T4 TEV1 protein. Endonuclease specific to the thymidylate synthase (td) gene splice junction. Found in putative intron-homing endonucleases encoded by group I introns of fungi and phage. Mycobacterium hypothetical protein Y002. Exonuclease by similarity. Bacillus subtilis hypothetical protein YURQ. ; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3C65_A 2NRZ_A 2NRR_A 2NRX_A 2NRV_A 2NRT_A 2NRW_A.
Probab=78.62 E-value=14 Score=37.66 Aligned_cols=105 Identities=19% Similarity=0.254 Sum_probs=51.8
Q ss_pred CCCeEEEEEEecCCCCCCCCCCcEEEEEeeeCCCCcc-ceeEEEEEccCChhhhhhhhhcccCCCcccchhHHHHHHHHH
Q 001469 773 DRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVT-KYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLIS 851 (1073)
Q Consensus 773 ~~~tmiiG~DVsHp~~g~~~~pSiaavVaS~d~~~~~-~y~~~~~~Q~~~~E~i~~l~~~~~~p~~~~~~~~mi~~~L~~ 851 (1073)
..|.-|-++|+||-.. .-.|+++|.-.| .... +.+=.+.+... +-.+|. .+|.|.|..
T Consensus 9 ~~P~rIE~fDiSh~~G----~~~Vgs~Vvf~~-G~~~k~~YR~f~i~~~--~~~dDy--------------~~M~Evl~R 67 (155)
T PF08459_consen 9 KLPRRIECFDISHIQG----SDTVGSMVVFEN-GKPDKSEYRRFNIKTV--DGGDDY--------------AAMREVLTR 67 (155)
T ss_dssp S--SEEEEEEEEECTT----TCEEEEEEEEET-TEE-GGG-EEEEEE----STT-HH--------------HHHHHHHHH
T ss_pred CCCCEEEEEECcccCC----cccEEEEEEEEC-CccChhhCceEecCCC--CCCcHH--------------HHHHHHHHH
Confidence 3567899999999753 236888887665 3221 12222333311 112454 466666655
Q ss_pred HHHH----cCCCCceEEEEecCCChhHHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEEeec--cccc
Q 001469 852 FRRA----TGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKR--HHTR 913 (1073)
Q Consensus 852 f~~~----~~~~P~~IIiyRDGVSEGQf~~Vl~~El~~I~~A~~~~~~~y~P~it~Ivv~Kr--HhtR 913 (1073)
+++. ...+|+=||| || +.||+. +.++|++++. .. |.+|-..|+ |+|+
T Consensus 68 R~~~~~~~~~~lPDLilI--DG-G~gQl~--------aa~~~l~~lg--l~--i~viglaK~~~~~t~ 120 (155)
T PF08459_consen 68 RFKRLKEEKEPLPDLILI--DG-GKGQLN--------AAKEVLKELG--LN--IPVIGLAKNDEHKTG 120 (155)
T ss_dssp HHCCCHHHT----SEEEE--SS-SHHHHH--------HHHHHHHCTT--------EEEEESSSSE---
T ss_pred HHhcccccCCCCCCEEEE--cC-CHHHHH--------HHHHHHHHcC--CC--eEEEEEEeccccccc
Confidence 5532 2368998887 77 567764 4457777663 33 555555554 5555
No 26
>PRK11617 endonuclease V; Provisional
Probab=75.75 E-value=91 Score=33.81 Aligned_cols=39 Identities=13% Similarity=0.183 Sum_probs=31.4
Q ss_pred CCCCHHHHHHHHHHhhcccccccCcccccchhHHHHHHHHHHhhhc
Q 001469 973 NKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYM 1018 (1073)
Q Consensus 973 ~~~~~d~Lq~lT~~LCy~y~r~t~sVSip~P~yYA~l~a~Rar~~~ 1018 (1073)
+..+.|+--.++-.+|= --++|.|+..||++|.+.+...
T Consensus 179 h~i~l~~A~~~v~~~~~-------~yRlPePlR~Ad~ls~~~~~~~ 217 (224)
T PRK11617 179 HRVSLDSALAWVQRCMK-------GYRLPEPTRWADALASRRPAFV 217 (224)
T ss_pred CCcCHHHHHHHHHHHcc-------CCCCCHHHHHHHHHHhhhhhhh
Confidence 46788998899988873 3379999999999998887543
No 27
>TIGR00194 uvrC excinuclease ABC, C subunit. This family consists of the DNA repair enzyme UvrC, an ABC excinuclease subunit which interacts with the UvrA/UvrB complex to excise UV-damaged nucleotide segments.
Probab=68.92 E-value=34 Score=42.38 Aligned_cols=108 Identities=21% Similarity=0.234 Sum_probs=62.3
Q ss_pred eEEEEEEecCCCCCCCCCCcEEEEEeeeCCCCcc--ceeEEEEEccCChhhhhhhhhcccCCCcccchhHHHHHHHHHHH
Q 001469 776 TIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVT--KYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISFR 853 (1073)
Q Consensus 776 tmiiG~DVsHp~~g~~~~pSiaavVaS~d~~~~~--~y~~~~~~Q~~~~E~i~~l~~~~~~p~~~~~~~~mi~~~L~~f~ 853 (1073)
..|-++|+||-.. .-.|+++|.-.| .... .|. ...+.. .+-.+|. .||+|.|...+
T Consensus 382 ~rIE~fDiSh~~G----~~~V~smVvf~~-G~~~k~~YR-~f~i~~--~~~~dDy--------------a~m~Evl~RR~ 439 (574)
T TIGR00194 382 KRIEIFDISHIDG----SQTVGSMVVFED-GKPLKASYR-RYNINS--ITGGDDY--------------AAMREVLRRRY 439 (574)
T ss_pred CEEEEEECCccCC----CcceEEEEEEeC-CccChhhCC-eeecCC--CCCCCHH--------------HHHHHHHHHHH
Confidence 6788999999864 236888887766 3332 121 112211 1112454 45666664444
Q ss_pred HH-cC----CCCceEEEEecCCChhHHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEEee--cccccccccC
Q 001469 854 RA-TG----QKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQK--RHHTRLFANN 918 (1073)
Q Consensus 854 ~~-~~----~~P~~IIiyRDGVSEGQf~~Vl~~El~~I~~A~~~~~~~y~P~it~Ivv~K--rHhtRff~~~ 918 (1073)
++ .. .+|+=||| || +.||+..+ .++++++. ....|.+|-..| ||.+++|..+
T Consensus 440 ~r~~~~~~~~~PDLili--DG-GkgQl~aa--------~~~l~~lg--~~~~i~viglaK~~~~~~~i~~~~ 498 (574)
T TIGR00194 440 SSIQKKNNLPLPDLILI--DG-GKGQLNAA--------LEVLKSLG--VVNKPIVIGLAKAKRHETDIFLIG 498 (574)
T ss_pred hhhccccCCCCCCEEEE--eC-CHHHHHHH--------HHHHHHcC--CCCCCcEEEEEecCCCceEEEeCC
Confidence 33 11 47987776 77 56777544 45566663 212466777777 7778888654
No 28
>PHA00370 III attachment protein
Probab=60.64 E-value=26 Score=37.84 Aligned_cols=6 Identities=17% Similarity=0.689 Sum_probs=2.3
Q ss_pred EEEEEE
Q 001469 309 FKVVIK 314 (1073)
Q Consensus 309 ~~v~i~ 314 (1073)
|+++|-
T Consensus 256 Ye~~I~ 261 (297)
T PHA00370 256 YEFIIG 261 (297)
T ss_pred hhhhhc
Confidence 333333
No 29
>PRK14672 uvrC excinuclease ABC subunit C; Provisional
Probab=60.29 E-value=74 Score=39.98 Aligned_cols=109 Identities=21% Similarity=0.294 Sum_probs=63.1
Q ss_pred CCCeEEEEEEecCCCCCCCCCCcEEEEEeeeCCCCccc-eeEEEEEccCChhhhhhhhhcccCCCcccchhHHHHHHHHH
Q 001469 773 DRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTK-YAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLIS 851 (1073)
Q Consensus 773 ~~~tmiiG~DVsHp~~g~~~~pSiaavVaS~d~~~~~~-y~~~~~~Q~~~~E~i~~l~~~~~~p~~~~~~~~mi~~~L~~ 851 (1073)
..|..|-++|+||-.. .-.|+++|.-.| ....+ .+=...+.... .-++|+ .+|.|.|..
T Consensus 452 ~~p~rIE~fDiSh~~G----~~~VasmVvf~~-G~p~k~~YR~f~ik~~~-~~~DD~--------------asM~Evl~R 511 (691)
T PRK14672 452 RIPTLIEGFDISHLGG----KYTVASLICFKN-GAPDTKNYRLFNLRAHD-TRIDDF--------------ASMREAIAR 511 (691)
T ss_pred CCCCeEEEEECCccCC----cCceEEEEEEEC-CccChhhCCeeeccCCC-CCCchH--------------HHHHHHHHH
Confidence 3578999999999753 236888888766 33221 11112222110 113554 466777655
Q ss_pred HHHHc---CCCCceEEEEecCCChhHHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEEeecccccccc
Q 001469 852 FRRAT---GQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFA 916 (1073)
Q Consensus 852 f~~~~---~~~P~~IIiyRDGVSEGQf~~Vl~~El~~I~~A~~~~~~~y~P~it~Ivv~KrHhtRff~ 916 (1073)
.+++. ..+|+=||| || +.||+..+ ++++.++. . .|.+|-..||.-.-|+|
T Consensus 512 R~~r~~~~~~~PDLilI--DG-GkgQl~aa--------~~vl~elg--l--~i~vigLaKr~e~i~~~ 564 (691)
T PRK14672 512 RYTHTPEGYTLPDLILV--DG-GIGHVSAA--------QHVLDALG--L--SIPLVGLAKRAEELFIP 564 (691)
T ss_pred HhhcccccCCCCCEEEE--eC-CHHHHHHH--------HHHHHHcC--C--CCcEEEEEecccEEEeC
Confidence 55432 248987776 76 55776543 46666663 2 47788888976444444
No 30
>cd06559 Endonuclease_V Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases. Endonuclease_V (EndoV) is an enzyme that can initiate repair of all possible deaminated DNA bases. EndoV cleaves the DNA strand containing lesions at the second phosphodiester bond 3' to the lesion using Mg2+ as a cofactor. EndoV homologs are conserved throughout all domains of life from bacteria to humans. EndoV is encoded by the nfi gene and nfi null mutant mice have a phenotype prone to cancer. The ability of endonuclease V to recognize mismatches and abnormal replicative DNA structures suggests that the enzyme plays an important role in DNA metabolism. The details of downstream processing for the EndoV pathway remain unknown.
Probab=57.70 E-value=48 Score=35.58 Aligned_cols=33 Identities=15% Similarity=0.272 Sum_probs=26.9
Q ss_pred CCCCHHHHHHHHHHhhcccccccCcccccchhHHHHHHHH
Q 001469 973 NKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAF 1012 (1073)
Q Consensus 973 ~~~~~d~Lq~lT~~LCy~y~r~t~sVSip~P~yYA~l~a~ 1012 (1073)
+..+.|+--+++-.+| +.-++|.|+..||+++.
T Consensus 175 h~i~l~~A~~~v~~~~-------~~~r~Pep~R~Ad~~sr 207 (208)
T cd06559 175 HRIDLETAVELVLKCC-------KGYRLPEPTRLADLLSR 207 (208)
T ss_pred CCcCHHHHHHHHHHHc-------cCCCCCcHHHHHHHHhc
Confidence 4678888888888876 34679999999999874
No 31
>COG1515 Nfi Deoxyinosine 3'endonuclease (endonuclease V) [DNA replication, recombination, and repair]
Probab=56.75 E-value=1.4e+02 Score=31.89 Aligned_cols=49 Identities=14% Similarity=0.152 Sum_probs=33.6
Q ss_pred ccccCceEEEEecCCCCCHHHHHHHHHHhhcccccccCcccccchhHHHHHHHHHH
Q 001469 959 GTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRA 1014 (1073)
Q Consensus 959 GTarPthY~Vl~De~~~~~d~Lq~lT~~LCy~y~r~t~sVSip~P~yYA~l~a~Ra 1014 (1073)
.|.+.+.=.++-=.+..+.+..-+|+.+|| +..++|.|+-.||+++.+.
T Consensus 163 ~t~~~~~pi~vS~g~~i~l~sal~l~~~l~-------~~~rlpeptr~ad~~a~~~ 211 (212)
T COG1515 163 RTKERAKPIFVSPGHRISLPSALKLAQRLS-------KGYRLPEPTRLADILAKKR 211 (212)
T ss_pred EecccCCCeEEccCCccCHHHHHHHHHHHc-------ccccCCCcccHHHHhhhhc
Confidence 344333333333344568888889998887 4478999999999998754
No 32
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=55.54 E-value=48 Score=38.79 Aligned_cols=11 Identities=9% Similarity=0.386 Sum_probs=4.9
Q ss_pred cCCCceeeeeE
Q 001469 225 LPDKDLHQYDV 235 (1073)
Q Consensus 225 ~~~~~iy~YdV 235 (1073)
+....+--|+|
T Consensus 182 ~rG~kVAsF~i 192 (641)
T KOG3915|consen 182 LRGAKVASFTI 192 (641)
T ss_pred ecCceeeEEEe
Confidence 33344444444
No 33
>PRK12306 uvrC excinuclease ABC subunit C; Reviewed
Probab=51.65 E-value=1.3e+02 Score=37.00 Aligned_cols=107 Identities=20% Similarity=0.303 Sum_probs=60.9
Q ss_pred CCeEEEEEEecCCCCCCCCCCcEEEEEeeeCCCCcc-ceeEEEEEccCChhhhhhhhhcccCCCcccchhHHHHHHHHHH
Q 001469 774 RPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVT-KYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISF 852 (1073)
Q Consensus 774 ~~tmiiG~DVsHp~~g~~~~pSiaavVaS~d~~~~~-~y~~~~~~Q~~~~E~i~~l~~~~~~p~~~~~~~~mi~~~L~~f 852 (1073)
.|.-|-++|+||-.. .-.|+++|.-.| .... +.+=...+.. .+-.+|. .||+|.|...
T Consensus 365 ~p~rIE~fDiSh~~G----~~~V~smVvf~~-G~p~k~~YR~f~Ik~--~~~~dDy--------------~~m~Evl~RR 423 (519)
T PRK12306 365 PPNVIECFDISHLSG----TSTVGSMVQFRN-GKPDKKNYRRFKIKT--VEGIDDF--------------ASIAEVVRRR 423 (519)
T ss_pred CCCeEEEEECCccCC----CCceEEEEEEeC-CccChhhcCeeecCC--CCCCCHH--------------HHHHHHHHHH
Confidence 456799999999753 236888887666 3222 1111122221 1112454 4566666444
Q ss_pred HHHc----CCCCceEEEEecCCChhHHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEEeeccccccccc
Q 001469 853 RRAT----GQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFAN 917 (1073)
Q Consensus 853 ~~~~----~~~P~~IIiyRDGVSEGQf~~Vl~~El~~I~~A~~~~~~~y~P~it~Ivv~KrHhtRff~~ 917 (1073)
+++. ..+|+=||| || +-||+..+ .+++.++. . .|.+|-..|+. .++|..
T Consensus 424 ~~r~~~~~~~~PDLilI--DG-GkgQl~aa--------~~~l~elg--~--~i~viglaK~~-e~i~~p 476 (519)
T PRK12306 424 YSRLLEENSELPDLIVI--DG-GKGQLSSA--------FKELRKLG--L--KIPLISIAKRE-EEIYVP 476 (519)
T ss_pred HhhcccccCCCCCEEEE--eC-CHHHHHHH--------HHHHHHcC--C--CCcEEEEEcCc-eEEEeC
Confidence 4321 148987776 77 56777644 45666663 2 47788888976 445543
No 34
>PRK14670 uvrC excinuclease ABC subunit C; Provisional
Probab=49.17 E-value=1.6e+02 Score=36.68 Aligned_cols=109 Identities=21% Similarity=0.267 Sum_probs=61.4
Q ss_pred CCeEEEEEEecCCCCCCCCCCcEEEEEeeeCCCCcc-ceeEEEEEccCChhhhhhhhhcccCCCcccchhHHHHHHHHHH
Q 001469 774 RPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVT-KYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISF 852 (1073)
Q Consensus 774 ~~tmiiG~DVsHp~~g~~~~pSiaavVaS~d~~~~~-~y~~~~~~Q~~~~E~i~~l~~~~~~p~~~~~~~~mi~~~L~~f 852 (1073)
.|..|-++|+||-.. .-.|+++|.-.| .... +.+=...+.......++|. .+|+|.|...
T Consensus 357 ~p~rIE~fDiSh~~G----~~~V~smVvf~~-G~~~k~~YRkf~ik~~~~~~~DD~--------------a~M~Evl~RR 417 (574)
T PRK14670 357 LPKTIEGFDIAHLNG----QKTVASLVTFKM-GKPFKDGYRVYKINSLLKGEIDDF--------------KAIKEVISRR 417 (574)
T ss_pred CCCeEEEEECCccCC----CCceEEEEEEEC-CccChhhCCeeeccCCCCCCCCHH--------------HHHHHHHHHH
Confidence 467899999999763 236888887766 3332 1111122221100002454 4566666544
Q ss_pred HHH--c--CCCCceEEEEecCCChhHHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEEeeccccccc
Q 001469 853 RRA--T--GQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLF 915 (1073)
Q Consensus 853 ~~~--~--~~~P~~IIiyRDGVSEGQf~~Vl~~El~~I~~A~~~~~~~y~P~it~Ivv~KrHhtRff 915 (1073)
++. . ..+|+=||| || +.||+..+ .+++.++. ....|.+|-..|+.-+ +|
T Consensus 418 ~~r~~~~~~~~PDLilI--DG-GkgQl~aa--------~~vl~~lg--~~~~i~v~gLaK~~e~-i~ 470 (574)
T PRK14670 418 YSKLINEQLELPNLILI--DG-GKGQLNAA--------YSILKGLK--IENKVKVCALAKKEET-IF 470 (574)
T ss_pred HhhcccccCCCCCEEEE--eC-CHHHHHHH--------HHHHHHcC--CCCCceEEEEecCCeE-EE
Confidence 433 1 248987776 77 56776544 45666663 3234778888886633 44
No 35
>PRK14667 uvrC excinuclease ABC subunit C; Provisional
Probab=46.33 E-value=1.5e+02 Score=36.82 Aligned_cols=106 Identities=20% Similarity=0.239 Sum_probs=61.5
Q ss_pred CCeEEEEEEecCCCCCCCCCCcEEEEEeeeCCCCccc-eeEEEEEccCChhhhhhhhhcccCCCcccchhHHHHHHHHHH
Q 001469 774 RPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTK-YAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISF 852 (1073)
Q Consensus 774 ~~tmiiG~DVsHp~~g~~~~pSiaavVaS~d~~~~~~-y~~~~~~Q~~~~E~i~~l~~~~~~p~~~~~~~~mi~~~L~~f 852 (1073)
.|..|-++|+||-.. .-.|+++|.-.| ....+ .+=...+... +-.+|+ .||.|.|...
T Consensus 360 ~p~rIE~fDiSh~~G----~~~V~smVvf~~-G~~~k~~YR~f~i~~~--~~~dD~--------------~~m~Evl~RR 418 (567)
T PRK14667 360 LPERIEGFDISHFYG----EFTVGSCVVWED-GSMNKKEYRRYKIKTV--DGIDDY--------------ASLREVLTRR 418 (567)
T ss_pred CCCeEEEEECcccCC----CcceEEEEEEEC-CccChhhCCeeecCCC--CCCCHH--------------HHHHHHHHHH
Confidence 467899999999753 236888888776 33321 1111222211 113454 4667766555
Q ss_pred HHHc----CCCCceEEEEecCCChhHHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEEeecccccccc
Q 001469 853 RRAT----GQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFA 916 (1073)
Q Consensus 853 ~~~~----~~~P~~IIiyRDGVSEGQf~~Vl~~El~~I~~A~~~~~~~y~P~it~Ivv~KrHhtRff~ 916 (1073)
+++. ..+|+=||| || +.||+..+ .++++++. . .|.+|-..|+. .++|.
T Consensus 419 ~~r~~~~~~~~PDLili--DG-GkgQl~aa--------~~~l~~lg--~--~i~v~glaK~~-e~i~~ 470 (567)
T PRK14667 419 ARRYKEGENPMPDLWLI--DG-GKGQLSVG--------IEVRDRLG--L--NIKVFSLAKKE-EILYT 470 (567)
T ss_pred hhhccccCCCCCCEEEE--eC-CHHHHHHH--------HHHHHHcC--C--CCcEEEEEecC-cEEEc
Confidence 4431 237987776 77 56776544 45666663 2 47788888865 44543
No 36
>PF04493 Endonuclease_5: Endonuclease V; InterPro: IPR007581 Endonuclease V is specific for single-stranded DNA, for duplex DNA that contains uracil, or that is damaged []. Matrix metalloproteinase-1 (MMP-1) is the major enzyme responsible for collagen 1 digestion. It is induced by exposure to sunlight, but is reduced with treatment of DNA repair enzyme endonuclease V []. This family consequently has potential medical importance []. This endonuclease also appears in bifunctional enzymes, such as the bifunctional methyltransferase/endonuclease in Thermoplasma acidophilum.; GO: 0004519 endonuclease activity, 0006281 DNA repair; PDB: 3GA2_A 2W36_A 3HD0_A 2W35_B 3GOC_B.
Probab=46.02 E-value=1.5e+02 Score=31.88 Aligned_cols=31 Identities=16% Similarity=0.367 Sum_probs=23.6
Q ss_pred CCCHHHHHHHHHHhhcccccccCc-ccccchhHHHHHHH
Q 001469 974 KFTADGLQSLTNNLCYTYARCTRS-VSIVPPAYYAHLAA 1011 (1073)
Q Consensus 974 ~~~~d~Lq~lT~~LCy~y~r~t~s-VSip~P~yYA~l~a 1011 (1073)
..+.+..-+++..+| +. -++|-|++.||+.+
T Consensus 175 ~i~l~ta~~iv~~~~-------~~~~r~PeP~r~Ad~~t 206 (206)
T PF04493_consen 175 RISLETALEIVLKLC-------KGGYRLPEPTRLADLLT 206 (206)
T ss_dssp SS-HHHHHHHHHHTS-------STTSSS-HHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHc-------CCCCcCCCcchhhhhcC
Confidence 468888888888887 44 78999999999864
No 37
>PRK14671 uvrC excinuclease ABC subunit C; Provisional
Probab=44.90 E-value=1.8e+02 Score=36.62 Aligned_cols=106 Identities=21% Similarity=0.257 Sum_probs=61.3
Q ss_pred CCeEEEEEEecCCCCCCCCCCcEEEEEeeeCCCCcc--ceeEEEEEccCChhhhhhhhhcccCCCcccchhHHHHHHHHH
Q 001469 774 RPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVT--KYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLIS 851 (1073)
Q Consensus 774 ~~tmiiG~DVsHp~~g~~~~pSiaavVaS~d~~~~~--~y~~~~~~Q~~~~E~i~~l~~~~~~p~~~~~~~~mi~~~L~~ 851 (1073)
.|..|-++|+||-.. .-.|+++|.-.| .... .|. ...+... +-.+|. .+|.|.|..
T Consensus 414 ~p~rIE~fDiSh~~G----~~~V~smVvf~~-G~~~k~~YR-~f~ik~~--~~~dDy--------------~~m~Evl~R 471 (621)
T PRK14671 414 LPRRIECFDNSHFQG----TDYVSSMVCFVD-GKPKKSDYR-KFKLRSF--EGSDDY--------------AAMREVVTR 471 (621)
T ss_pred CCCEEEEEECCccCC----CCceEEEEEEEC-CccChhhCC-eeecCCC--CCCCHH--------------HHHHHHHHH
Confidence 467899999999763 236888887766 3322 221 1222211 112454 456666655
Q ss_pred HHHHc----CCCCceEEEEecCCChhHHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEEeeccccccccc
Q 001469 852 FRRAT----GQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFAN 917 (1073)
Q Consensus 852 f~~~~----~~~P~~IIiyRDGVSEGQf~~Vl~~El~~I~~A~~~~~~~y~P~it~Ivv~KrHhtRff~~ 917 (1073)
.+++- ..+|+=||| || +.||+..+ .++++++. . .|.+|-..||. .++|..
T Consensus 472 R~~r~~~~~~~~PDLilI--DG-GkgQl~aa--------~~vl~~lg--~--~i~viglaK~~-e~i~~~ 525 (621)
T PRK14671 472 RYSGSLAEELPLPDLIVI--DG-GKGQVNSA--------WKVLQELG--L--SVPVIGLAKRL-EEIFTP 525 (621)
T ss_pred HhhccccccCCCCCEEEE--eC-CHHHHHHH--------HHHHHHcC--C--CCcEEEEEecc-cEEEeC
Confidence 44331 248987776 77 56776544 45666663 2 47788888844 555543
No 38
>PF05642 Sporozoite_P67: Sporozoite P67 surface antigen; InterPro: IPR008845 This family consists of several Theileria P67 surface antigens. A stage specific surface antigen of Theileria parva, p67, is the basis for the development of an anti-sporozoite vaccine for the control of East Coast fever (ECF) in Bos taurus. The antigen has been shown to contain five distinct linear peptide sequences recognised by sporozoite-neutralising murine monoclonal antibodies [].
Probab=44.17 E-value=6e+02 Score=31.19 Aligned_cols=20 Identities=20% Similarity=0.469 Sum_probs=11.4
Q ss_pred cCCHHHHHHHHHHhcCCchH
Q 001469 530 RLNERQITALLKVTCQRPHE 549 (1073)
Q Consensus 530 kl~~~q~~~mik~a~~~P~~ 549 (1073)
.|++++...++..-...|.+
T Consensus 587 dlteeev~kilde~vkd~s~ 606 (727)
T PF05642_consen 587 DLTEEEVKKILDELVKDPSD 606 (727)
T ss_pred ccCHHHHHHHHHHHhcCcch
Confidence 45666666665555555544
No 39
>KOG3875 consensus Peroxisomal biogenesis protein peroxin [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.24 E-value=1.1e+02 Score=34.24 Aligned_cols=18 Identities=22% Similarity=0.401 Sum_probs=11.9
Q ss_pred ccccccccceEeccCccc
Q 001469 510 RPNYLPMEVCKIVEGQRY 527 (1073)
Q Consensus 510 ~~~ylP~Elc~i~~gQ~~ 527 (1073)
..-|+|.-.|.|+.-|.-
T Consensus 318 ~tG~iP~NYvkIi~rq~q 335 (362)
T KOG3875|consen 318 TTGLIPINYVKIIGRQPQ 335 (362)
T ss_pred eeeeeehhhhhhhhcCCC
Confidence 345788888888754443
No 40
>PRK00558 uvrC excinuclease ABC subunit C; Validated
Probab=37.68 E-value=2.7e+02 Score=34.89 Aligned_cols=99 Identities=21% Similarity=0.283 Sum_probs=56.7
Q ss_pred CCeEEEEEEecCCCCCCCCCCcEEEEEeeeCCCCcc--ceeEEEEEccCChhhhhhhhhcccCCCcccchhHHHHHHHHH
Q 001469 774 RPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVT--KYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLIS 851 (1073)
Q Consensus 774 ~~tmiiG~DVsHp~~g~~~~pSiaavVaS~d~~~~~--~y~~~~~~Q~~~~E~i~~l~~~~~~p~~~~~~~~mi~~~L~~ 851 (1073)
.|..|-++|+||-.. .-.|+++|.-.| .... .|. ...+.. .+-.+|. .||+|.|..
T Consensus 382 ~p~rIE~fDiSh~~G----~~~V~smVvf~~-G~~~k~~YR-~f~i~~--~~~~dDy--------------a~m~Evl~R 439 (598)
T PRK00558 382 PPYRIECFDISHIQG----TATVASMVVFED-GGPDKSEYR-RYNIKG--VTGGDDY--------------AAMREVLTR 439 (598)
T ss_pred CCCEEEEEECCccCC----CcceEEEEEEEC-CccChhhCC-eeecCC--CCCCCHH--------------HHHHHHHHH
Confidence 467899999999753 236888887666 3222 121 122221 1112454 456666644
Q ss_pred HHHH----cCCCCceEEEEecCCChhHHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEEeec
Q 001469 852 FRRA----TGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKR 909 (1073)
Q Consensus 852 f~~~----~~~~P~~IIiyRDGVSEGQf~~Vl~~El~~I~~A~~~~~~~y~P~it~Ivv~Kr 909 (1073)
.++. ...+|+=||| || +.||+..+ .++++++. . .|.+|-..|.
T Consensus 440 R~~~~~~~~~~~PDLili--DG-GkgQl~~a--------~~~l~~lg--~--~i~v~glaK~ 486 (598)
T PRK00558 440 RYSRLLKEFGPLPDLILI--DG-GKGQLNAA--------KEVLEELG--L--DIPVVGLAKG 486 (598)
T ss_pred HhhccccccCCCCCEEEE--eC-CHHHHHHH--------HHHHHHCC--C--CCcEEEEEec
Confidence 4433 2347987776 77 56787654 45666663 2 3667766673
No 41
>PRK14666 uvrC excinuclease ABC subunit C; Provisional
Probab=37.48 E-value=2.4e+02 Score=35.73 Aligned_cols=100 Identities=18% Similarity=0.160 Sum_probs=56.7
Q ss_pred CCeEEEEEEecCCCCCCCCCCcEEEEEeeeCCCCccc-eeEEEEEccCChhhhhhhhhcccCCCcccchhHHHHHHHHHH
Q 001469 774 RPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTK-YAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISF 852 (1073)
Q Consensus 774 ~~tmiiG~DVsHp~~g~~~~pSiaavVaS~d~~~~~~-y~~~~~~Q~~~~E~i~~l~~~~~~p~~~~~~~~mi~~~L~~f 852 (1073)
.|..|-++|+||-.. .-.++++|.-.| ....+ .+=.+.+... + .+|. .+|.|.|...
T Consensus 471 ~p~rIE~~DiSh~~G----~~~v~~mVvf~~-G~p~k~~YR~f~i~~~--~-~dD~--------------~~m~ev~~RR 528 (694)
T PRK14666 471 PPHRIEAVDVSHTGG----RNTRVGMVVFED-GKPARDAYRTYAFEDG--E-GDDY--------------GTLAAWAGRR 528 (694)
T ss_pred CCCEEEEEECcccCC----cCceEEEEEEEC-CccChhhCCeeeCCCC--C-CChH--------------HHHHHHHHHH
Confidence 467899999999863 235777877666 33321 1111222211 1 1454 4566666554
Q ss_pred HHHcCCCCceEEEEecCCChhHHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEEee
Q 001469 853 RRATGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQK 908 (1073)
Q Consensus 853 ~~~~~~~P~~IIiyRDGVSEGQf~~Vl~~El~~I~~A~~~~~~~y~P~it~Ivv~K 908 (1073)
+++...+|+=||| || +.||+..+ .+++.++.- ...|.+|-..|
T Consensus 529 ~~~~~~~PDLili--DG-G~gQl~aa--------~~~l~e~g~--~~~~~v~~laK 571 (694)
T PRK14666 529 VESGPPWPDLLLV--DG-GRGQLAAV--------VRALEEAGM--GGLFAVASIAK 571 (694)
T ss_pred hcCCCCCCCEEEE--cC-CHHHHHHH--------HHHHHHcCC--CCCccEEEEec
Confidence 4432348987776 77 56777644 456666632 22367777777
No 42
>PRK14669 uvrC excinuclease ABC subunit C; Provisional
Probab=35.95 E-value=2.8e+02 Score=34.98 Aligned_cols=107 Identities=17% Similarity=0.258 Sum_probs=60.1
Q ss_pred CCeEEEEEEecCCCCCCCCCCcEEEEEeeeCCCCccc-eeEEEEEccCChhhhhhhhhcccCCCcccchhHHHHHHHHHH
Q 001469 774 RPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTK-YAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISF 852 (1073)
Q Consensus 774 ~~tmiiG~DVsHp~~g~~~~pSiaavVaS~d~~~~~~-y~~~~~~Q~~~~E~i~~l~~~~~~p~~~~~~~~mi~~~L~~f 852 (1073)
.|..|-++|+||-.. .-.|+++|.-.| ....+ .+=...+.. .+-.+|. .+|+|.|...
T Consensus 395 ~p~rIE~fDiSh~~G----~~~V~smVvf~~-G~~~k~~YRkf~Ik~--~~~~DDy--------------a~M~Evl~RR 453 (624)
T PRK14669 395 LPSRIECFDISHIQG----AETVASMVVWED-GKMKKSDYRKFIIKT--VVGVDDF--------------ASMREVVTRR 453 (624)
T ss_pred CCCeEEEEECCccCC----CCceEEEEEEEC-CccChhhCCeeecCC--CCCCCHH--------------HHHHHHHHHH
Confidence 467899999999753 236888887666 33221 111112211 1113454 3556666444
Q ss_pred HHH---cC-CCCceEEEEecCCChhHHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEEeecccccccc
Q 001469 853 RRA---TG-QKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFA 916 (1073)
Q Consensus 853 ~~~---~~-~~P~~IIiyRDGVSEGQf~~Vl~~El~~I~~A~~~~~~~y~P~it~Ivv~KrHhtRff~ 916 (1073)
+++ .+ .+|+=||| || +.||+..+ .+++.++. .. .|.+|-..|+... +|-
T Consensus 454 ~~r~~~~~~~~PDLilI--DG-GkgQl~aa--------~~vl~elg--l~-~i~vigLaK~~e~-i~~ 506 (624)
T PRK14669 454 YSRLQEEKQPMPGLVLI--DG-GLGQLHAA--------AEALEAIG--IT-DQPLASIAKREEI-IYV 506 (624)
T ss_pred hhccccccCCCCCEEEE--eC-CHHHHHHH--------HHHHHHcC--CC-CCcEEEEecCCeE-EEC
Confidence 432 12 37987776 77 56777544 46666663 21 3778888887644 553
No 43
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=34.92 E-value=1.6e+02 Score=34.63 Aligned_cols=9 Identities=33% Similarity=0.434 Sum_probs=4.0
Q ss_pred cccccccce
Q 001469 511 PNYLPMEVC 519 (1073)
Q Consensus 511 ~~ylP~Elc 519 (1073)
++.+|+.-.
T Consensus 371 pvslppasv 379 (641)
T KOG3915|consen 371 PVSLPPASV 379 (641)
T ss_pred cccCCchhh
Confidence 444554433
No 44
>PF05387 Chorion_3: Chorion family 3; InterPro: IPR008449 This family consists Drosophila chorion proteins S36 and S38, which are involved in chorion membrane formation. The proteins consist of a central domain and two flanking 'arms'. The central domain contains tandemly repetitive peptides, which apparently generate a secondary structure of beta-sheet strands alternating with beta-turns, most probably, forming a twisted beta-pleated sheet or beta-barrel [].
Probab=28.42 E-value=2.2e+02 Score=30.84 Aligned_cols=38 Identities=24% Similarity=0.163 Sum_probs=18.9
Q ss_pred CCccCCCCCCCCCccCCCCCCCCCCCCcceEEeeeEEeecC-CCcee
Q 001469 186 SQVIQPAPPSSKSVRFPLRPGRGSTGTRCIVKANHFFAELP-DKDLH 231 (1073)
Q Consensus 186 ~~~~~~~p~~~~~~~~p~RP~~Gt~G~~v~l~tN~f~v~~~-~~~iy 231 (1073)
.+.+...|+..+-+ .||+ .+.++..|+=++-+. ...||
T Consensus 145 ~qii~~~Pl~PIIV---~~P~-----~P~~~~~~~Pp~VVk~~PVi~ 183 (277)
T PF05387_consen 145 HQIIIHQPLPPIIV---HQPG-----APPKVLNNHPPLVVKPAPVIY 183 (277)
T ss_pred ccEEEecCCCCeEe---cCCC-----CCchhhcCCCCeeecCCceEE
Confidence 33444444444444 4774 455566666665443 34455
No 45
>PLN03138 Protein TOC75; Provisional
Probab=26.94 E-value=46 Score=42.47 Aligned_cols=20 Identities=15% Similarity=0.257 Sum_probs=12.2
Q ss_pred ccccccccceE-eccCccccc
Q 001469 510 RPNYLPMEVCK-IVEGQRYSK 529 (1073)
Q Consensus 510 ~~~ylP~Elc~-i~~gQ~~~~ 529 (1073)
++.++=-||-. +.||+.++.
T Consensus 364 rD~VIRREL~~~lkeGd~fN~ 384 (796)
T PLN03138 364 QLPIIDRELPKQLRQGHIFNI 384 (796)
T ss_pred cCeEEeeecccccCCCcccCH
Confidence 45555556653 677887753
No 46
>PF07555 NAGidase: beta-N-acetylglucosaminidase ; InterPro: IPR011496 This family consists of both eukaryotic and prokaryotic hyaluronidases. Human Q9HAR0 from SWISSPROT is expressed during meningioma []. Clostridium perfringens, P26831 from SWISSPROT, is involved in pathogenesis and is likely to act on connectivity tissue during gas gangrene []. It catalyses the random hydrolysis of 1->4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate.; PDB: 2WB5_B 2V5C_B 2VUR_A 2V5D_A 2YDS_A 2CBI_A 2XPK_A 2CBJ_B 2J62_A 2X0Y_A ....
Probab=25.42 E-value=5.7e+02 Score=29.17 Aligned_cols=104 Identities=20% Similarity=0.156 Sum_probs=58.7
Q ss_pred HHHHHHHHhcCccc---C--CCCcccCCCCC--hhhHHHHHHHHHHHHHhhccCCCCceEEEEEeeCCCC-----cchhh
Q 001469 646 FELAQMCYISGMAF---N--PEPVIPPISAR--PEHVEKVLKTRYHDAMTKLGQGKELDLLIVILPDNNG-----SLYGD 713 (1073)
Q Consensus 646 ~~L~~~~~~~Gm~i---~--~~p~~~~~~~~--~~~~~~~l~~~~~~a~~~~~~~~~~~lvlvilp~~~~-----~~Y~~ 713 (1073)
..|.+++..+||+. . ..|.....+.. |++-.+.|+++.+.+.+ .+++|++.|-|..+- ..+..
T Consensus 18 ~~l~~f~~~~kmN~YiYAPKdDpyhr~~Wre~Yp~~el~~l~~L~~~a~~-----~~V~Fv~aisPg~~~~~s~~~d~~~ 92 (306)
T PF07555_consen 18 LDLIRFLGRYKMNTYIYAPKDDPYHRSKWREPYPEEELAELKELADAAKA-----NGVDFVYAISPGLDICYSSEEDFEA 92 (306)
T ss_dssp HHHHHHHHHTT--EEEE--TT-TTTTTTTTS---HHHHHHHHHHHHHHHH-----TT-EEEEEEBGTTT--TSHHHHHHH
T ss_pred HHHHHHHHHcCCceEEECCCCChHHHhhhcccCCHHHHHHHHHHHHHHHH-----cCCEEEEEECcccccccCcHHHHHH
Confidence 46777888899885 1 12433322211 44445667777776644 579999999998653 23455
Q ss_pred hhHhhh--cccCceeeeeeecccc-----------ccchhHHHHHHHHHHhhcC
Q 001469 714 LKRICE--TDLGLVSQCCLTKHVF-----------KMSKQYMANVALKINVKVG 754 (1073)
Q Consensus 714 IK~~~d--~~~GI~TQcv~~~~~~-----------k~~~q~~~Nv~lKiN~KlG 754 (1073)
||...+ .++||-.=+|+.+-+. +...+--..|+..|+..|.
T Consensus 93 L~~K~~ql~~lGvr~FailfDDi~~~~~~~~~~~~~~~~~~q~~l~n~v~~~l~ 146 (306)
T PF07555_consen 93 LKAKFDQLYDLGVRSFAILFDDIDGDLWHCDKDDFNSLAQAQARLLNRVNKELI 146 (306)
T ss_dssp HHHHHHHHHCTT--EEEEE-TS-SSC--TTTTTT-SCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCCEEEEeecCCCCccccccccccchHHHHHHHHHHHHHHHHh
Confidence 555444 4579999888877665 2223445577888887765
No 47
>cd01457 vWA_ORF176_type VWA ORF176 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most
Probab=23.68 E-value=3.6e+02 Score=28.24 Aligned_cols=69 Identities=16% Similarity=0.319 Sum_probs=43.8
Q ss_pred CCcccchhHHHHHHHHHHHHHc---CCCC--ceEEEEecCCChhHHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEEee
Q 001469 835 PVRGAVSGGMIKELLISFRRAT---GQKP--QRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQK 908 (1073)
Q Consensus 835 p~~~~~~~~mi~~~L~~f~~~~---~~~P--~~IIiyRDGVSEGQf~~Vl~~El~~I~~A~~~~~~~y~P~it~Ivv~K 908 (1073)
|..++.+...+..+++.|.... ...| ..|||+=||.....- .-...|.+|.+++.....-.|.||.|..
T Consensus 78 p~G~T~l~~~l~~a~~~~~~~~~~~~~~p~~~~vIiiTDG~~~d~~-----~~~~~i~~a~~~l~~~~~i~i~~v~vG~ 151 (199)
T cd01457 78 PDGGTNLAAVLQDALNNYFQRKENGATCPEGETFLVITDGAPDDKD-----AVERVIIKASDELDADNELAISFLQIGR 151 (199)
T ss_pred CCCcCcHHHHHHHHHHHHHHHHhhccCCCCceEEEEEcCCCCCcHH-----HHHHHHHHHHHhhccccCceEEEEEeCC
Confidence 4455667778888887776531 2344 889999999986421 1124567777766544345677777754
No 48
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=22.74 E-value=1.7e+02 Score=31.44 Aligned_cols=8 Identities=13% Similarity=0.609 Sum_probs=3.8
Q ss_pred HHHHHHcc
Q 001469 342 VLDIVLRE 349 (1073)
Q Consensus 342 ~Lniilr~ 349 (1073)
++|+|+++
T Consensus 161 ~~~~lv~k 168 (221)
T KOG0037|consen 161 FYNLLVRK 168 (221)
T ss_pred HHHHHHHH
Confidence 44455444
No 49
>PRK14668 uvrC excinuclease ABC subunit C; Provisional
Probab=22.09 E-value=5.1e+02 Score=32.41 Aligned_cols=99 Identities=22% Similarity=0.263 Sum_probs=56.6
Q ss_pred CCeEEEEEEecCCCCCCCCCCcEEEEEeeeCCCCccc-eeEEEEEccCChhhhhhhhhcccCCCcccchhHHHHHHHHHH
Q 001469 774 RPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTK-YAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISF 852 (1073)
Q Consensus 774 ~~tmiiG~DVsHp~~g~~~~pSiaavVaS~d~~~~~~-y~~~~~~Q~~~~E~i~~l~~~~~~p~~~~~~~~mi~~~L~~f 852 (1073)
.|..|-++|+||-.. .-.|+++|.-.| ....+ .+=...+.. -.+|. .+|.|.|...
T Consensus 374 ~p~rIE~fDiSh~~G----~~~V~s~Vvf~~-G~~~k~~YR~f~i~~----~~dD~--------------~~m~Evl~RR 430 (577)
T PRK14668 374 RPERIEGFDVSHAQG----RAVVGSNVCFVD-GSAETADYRRKKLTE----RNDDY--------------ANMRELVRWR 430 (577)
T ss_pred CCCEEEEEECCccCC----CCceEEEEEEEC-CccCHHHcCeecCCC----CCChH--------------HHHHHHHHHH
Confidence 467899999999753 236888887766 33221 111122222 13454 3455555433
Q ss_pred HHHc------CCCCceEEEEecCCChhHHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEEeecc
Q 001469 853 RRAT------GQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRH 910 (1073)
Q Consensus 853 ~~~~------~~~P~~IIiyRDGVSEGQf~~Vl~~El~~I~~A~~~~~~~y~P~it~Ivv~KrH 910 (1073)
+++- +.+|+=||| || +-||+..+ .+++.++. . .|.+|-..|+.
T Consensus 431 ~~r~~~~~~~~~~PDLili--DG-G~gQl~aa--------~~~l~elg--~--~i~v~glaK~~ 479 (577)
T PRK14668 431 AERAVEGRDDRPDPDLLLI--DG-GDGQLGAA--------RDALAETG--W--DVPAIALAKAE 479 (577)
T ss_pred HHhhhccccCCCCCCEEEE--eC-CHHHHHHH--------HHHHHHcC--C--CCcEEEEEcCC
Confidence 3321 248987776 77 45776544 46666663 2 47788888864
No 50
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=21.82 E-value=93 Score=22.95 Aligned_cols=19 Identities=16% Similarity=0.350 Sum_probs=15.9
Q ss_pred HHHHHHHHHcCCCCceEEE
Q 001469 847 ELLISFRRATGQKPQRIIF 865 (1073)
Q Consensus 847 ~~L~~f~~~~~~~P~~IIi 865 (1073)
.++..|+..|+++|..|-|
T Consensus 15 ~rv~~f~~~ngRlPnyV~i 33 (33)
T PF09373_consen 15 SRVNNFYESNGRLPNYVSI 33 (33)
T ss_pred HHHHHHHHHcCCCCCeeeC
Confidence 4778999999999998743
No 51
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=21.58 E-value=4.7e+02 Score=32.03 Aligned_cols=98 Identities=18% Similarity=0.218 Sum_probs=50.6
Q ss_pred HHHHHHHHHHhcCcccCCCCcccCCCCChhhHHHHHHHHHHHHHhhccCCCCceEEEEE--eeCCCCcchhh-hhHhhhc
Q 001469 644 FCFELAQMCYISGMAFNPEPVIPPISARPEHVEKVLKTRYHDAMTKLGQGKELDLLIVI--LPDNNGSLYGD-LKRICET 720 (1073)
Q Consensus 644 f~~~L~~~~~~~Gm~i~~~p~~~~~~~~~~~~~~~l~~~~~~a~~~~~~~~~~~lvlvi--lp~~~~~~Y~~-IK~~~d~ 720 (1073)
.++.+++.+...||.+-. ++.. -.+.++++..+ +.+.+ . +...+..||. -|..+.+.|-+ .|.+ .
T Consensus 98 vv~~fv~~a~~~Gidi~R--Ifd~-lndv~nl~~ai----~~vk~-a--g~~~~~~i~yt~sp~~t~e~~~~~a~~l--~ 165 (499)
T PRK12330 98 VVDRFVEKSAENGMDVFR--VFDA-LNDPRNLEHAM----KAVKK-V--GKHAQGTICYTVSPIHTVEGFVEQAKRL--L 165 (499)
T ss_pred HHHHHHHHHHHcCCCEEE--EEec-CChHHHHHHHH----HHHHH-h--CCeEEEEEEEecCCCCCHHHHHHHHHHH--H
Confidence 344455566678987621 1111 11123333333 32222 1 3445556655 44433344444 3433 4
Q ss_pred ccCceeeeeeeccccccchhHHHHHHHHHHhhcC
Q 001469 721 DLGLVSQCCLTKHVFKMSKQYMANVALKINVKVG 754 (1073)
Q Consensus 721 ~~GI~TQcv~~~~~~k~~~q~~~Nv~lKiN~KlG 754 (1073)
+.|+.+-|+ .+++--..+.-+..++-.|-..++
T Consensus 166 ~~Gad~I~I-kDtaGll~P~~~~~LV~~Lk~~~~ 198 (499)
T PRK12330 166 DMGADSICI-KDMAALLKPQPAYDIVKGIKEACG 198 (499)
T ss_pred HcCCCEEEe-CCCccCCCHHHHHHHHHHHHHhCC
Confidence 579887777 455555667777788777766664
No 52
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=20.52 E-value=3.9e+02 Score=33.91 Aligned_cols=23 Identities=13% Similarity=0.058 Sum_probs=14.6
Q ss_pred CCCCCCCCCCcceEEeeeEEeecC
Q 001469 203 LRPGRGSTGTRCIVKANHFFAELP 226 (1073)
Q Consensus 203 ~RP~~Gt~G~~v~l~tN~f~v~~~ 226 (1073)
+|++.+. =.+-.+.-|+|.+++.
T Consensus 627 rr~nW~k-I~p~d~s~~cFWvkv~ 649 (1102)
T KOG1924|consen 627 RRFNWSK-IVPRDLSENCFWVKVN 649 (1102)
T ss_pred ccCCccc-cCccccCccceeeecc
Confidence 4666554 3556677788887664
Done!