Query 001469
Match_columns 1073
No_of_seqs 433 out of 1399
Neff 7.5
Searched_HMMs 29240
Date Tue Mar 26 17:02:23 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001469.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_769-773//hhsearch_pdb/001469hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f3t_A Protein argonaute-2; hy 1.0 1 1 1618.2 76.2 833 193-1073 19-861 (861)
2 4f1n_A Kpago; argonaute, RNAI, 1.0 1 1 1502.6 56.6 837 192-1073 10-1046(1046)
3 2yhb_A QDE-2, post-transcripti 1.0 1 1 874.6 22.1 413 613-1073 2-437 (437)
4 1yvu_A Hypothetical protein AQ 1.0 1 1 867.6 37.4 658 217-1021 6-696 (706)
5 1u04_A Argonaute, hypothetical 1.0 1 1 768.9 38.6 661 213-1021 3-759 (771)
6 2yha_A Post-transcriptional ge 1.0 1 1 718.9 24.1 365 613-1073 2-388 (388)
7 3ho1_A Argonaute; argonaute, p 1.0 1 1 700.7 48.9 641 212-1016 5-669 (685)
8 2w42_A PIWI, putative uncharac 1.0 1 1 473.8 13.4 365 587-1020 5-407 (427)
9 4g0x_A Protein argonaute 1; MI 1.0 1 1 227.6 15.1 146 615-760 2-147 (147)
10 1vyn_A Argonaute2; nucleic aci 1.0 1 1 222.2 10.1 138 406-546 2-143 (143)
No 1
>4f3t_A Protein argonaute-2; hydrolase/gene regulation, RNAI, slicer, hydrolase-RNA; 2.25A {Homo sapiens} PDB: 4ei1_A 4ei3_A* 1r4k_A 1si2_A 1si3_A
Probab=1.00 E-value=1 Score=1618.18 Aligned_cols=833 Identities=44% Similarity=0.762 Sum_probs=727.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEC
Q ss_conf 99987756878999999998236971147856599852665689728765302229999999999985004984215616
Q 001469 193 PPSSKSVRFPLRPGRGSTGTRCIVKANHFFAELPDKDLHQYDVTITPEVTSRGVNRAVMEQLVKLYRESHLGKRLPAYDG 272 (1073)
Q Consensus 193 p~~~~~~~~p~RP~~Gt~G~~v~l~tN~f~i~~~~~~iy~YdV~i~pe~~~k~~~r~i~~~l~~~~~~~~~~~~~~~yDG 272 (1073)
|.+.+...+|+||++||.|++|.|+||||++++++..+|||||+|.|+..+++++|++++++++.++...|++..+||||
T Consensus 19 ~~~~~~~~~p~RPg~Gt~G~~i~l~aN~F~v~~~~~~ly~Y~V~i~p~~~~~~~~r~i~~~l~~~~~~~~~~~~~~afDG 98 (861)
T 4f3t_A 19 PIQGYAFKPPPRPDFGTSGRTIKLQANFFEMDIPKIDIYHYELDIKPEKCPRRVNREIVEHMVQHFKTQIFGDRKPVFDG 98 (861)
T ss_dssp ------CCCCBCCCCCCCSEEEEEEESEEEEECCSCEEEEEEEEEESCSCCHHHHHHHHHHHHHHSCCCCCTTCCCEECS
T ss_pred CCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECC
T ss_conf 54454566798997898884789995569987788862650378478767677999999999987556650686078758
Q ss_pred CCEEEECCCCCCCCCEEEEEEECCCCCCCCCCCCCEEEEEEEEEEEECHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 63278417789996308999815999999988784899999993540745489875168999937899999999804998
Q 001469 273 RKSLYTAGPLPFLSKEFRITLLDDDDGQGGQRREREFKVVIKLAARADLHHLGLFLQGRQADAPQEALQVLDIVLRELPT 352 (1073)
Q Consensus 273 ~~~lys~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~v~ik~~~~~~l~~l~~~l~~~~~~~~~~~lq~Lniilr~~~~ 352 (1073)
+++|||+.+||+++..+++.+....+ .+++.|+|+|++++++++.+|.+||.+.....+.++||+||||||+.++
T Consensus 99 ~~~l~s~~~L~~~~~~~~~~v~~~~~-----~~~~~~~V~I~~~~~i~l~~L~~~l~g~~~~~~~~~iq~Lniilr~~~~ 173 (861)
T 4f3t_A 99 RKNLYTAMPLPIGRDKVELEVTLPGE-----GKDRIFKVSIKWVSCVSLQALHDALSGRLPSVPFETIQALDVVMRHLPS 173 (861)
T ss_dssp SSEEEESSCCSCSSCEEEEECCC------------CEEEEEEEEEEEEHHHHHHHHHTCSSSCCHHHHHHHHHHHHHHHH
T ss_pred CCEEEECCCCCCCCCCEEEEEECCCC-----CCCCEEEEEEEEEEECCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 63178887678778636999863788-----9872799999990243889999996499878828999999999976221
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEEEECCEEEEECCCCCEEEEEECCEEEEECCCCHHHHHHHHHCCCCC---CCCCC
Q ss_conf 873455654459999996458997699721212210147805875405333474476199999998427999---99999
Q 001469 353 TRYCPVGRSFYSPDLGRRQPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVQQLLNRDVS---SRPLS 429 (1073)
Q Consensus 353 ~~~~~~Gr~ff~~~~~~~~~lg~Gle~~~G~~~Svr~~~~~l~LniD~s~~~F~~~~~l~d~i~~~~~~~~~---~~~~~ 429 (1073)
.++..+||+||++..+...++++|+|+|+||++|||+++++|+||+|+++++|+++++|+|++.++++..+. .+.++
T Consensus 174 ~~~~~vGR~Ff~~~~~~~~~lg~Gle~w~G~~~Svr~~~~~l~LnvDvs~~~F~~~~~v~d~~~~~~~~~~~~~~~~~~~ 253 (861)
T 4f3t_A 174 MRYTPVGRSFFTASEGCSNPLGGGREVWFGFHQSVRPSLWKMMLNIDVSATAFYKAQPVIEFVCEVLDFKSIEEQQKPLT 253 (861)
T ss_dssp HHSEEETTEEECCC---CCEEETTEEEEEEEEEEEEECSSSEEEEEEEEEEEEECCEEHHHHHHHHHTCSSCC---CCCC
T ss_pred CCCCCCCCCCCCCCCCCEECCCCCEEEEECEEEEEEECCCCCEEEECCCCEEEEECCCHHHHHHHHHCCCCHHHHCCCCC
T ss_conf 24642687755898775011689879984506789851785278541431027607709999999863455022035657
Q ss_pred HHHHHHHHHHHCCCEEEEEECCCCCCEEEEECCCCCCCCCEEEEEC-CCC--CEEEHHHHHHHHCCCCCCCCCCCEEEEC
Q ss_conf 6789999998159599993259866339994457899875055415-899--3742999999881986678998379924
Q 001469 430 DADRVKIKKALRGVRVEVTHRGNMRRKYRISGLTSQTTGELTFPVD-ESG--TLKSVVEYFYETYGFVIQHTQWPCLQVG 506 (1073)
Q Consensus 430 ~~~~~~i~~~Lkgl~V~~~~~~~~~r~~~I~~i~~~~a~~~~F~~~-~~g--~~isV~~Yf~~~Y~i~L~~p~lP~v~~g 506 (1073)
+.++.+++++|+|++|.++|.+..+|+|+|.+|++.++.+.+|.++ ++| .+|||+|||+++|||+|+||+||||++|
T Consensus 254 ~~~~~~~~k~LkGl~V~~t~~~~~~r~yrI~~i~~~pa~~~~F~~~~~~g~~~~iSV~dYFk~kYni~L~~p~lPll~~g 333 (861)
T 4f3t_A 254 DSQRVKFTKEIKGLKVEITHCGQMKRKYRVCNVTRRPASHQTFPLQQESGQTVECTVAQYFKDRHKLVLRYPHLPCLQVG 333 (861)
T ss_dssp HHHHHHHHHHHTTCEEEESCC---CCEEEEEEEEEEETTTCEEEEECSSSCEEEEEHHHHHHHHHCCCCSCTTSEEEEES
T ss_pred HHHHHHHHHHHCCCEEEEEECCCCCCEEEEEECCCCCCCCCEEEEECCCCCCEEEEHHHHHHHHCCCCCCCCCCCEEEEC
T ss_conf 78999999985793899830377886599953788998776787652789841688899998753952479997638834
Q ss_pred CCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCEEEEEE
Q ss_conf 58866211345458515743334599999999999822992678999999998325999821121373872653187637
Q 001469 507 NQQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPHERERDIMQTVHHNAYHEDPYAREFGIKISEKLASVEAR 586 (1073)
Q Consensus 507 ~~~~~~ylP~Elc~i~~gQ~~~~kl~~~q~~~mik~a~~~P~~R~~~I~~~~~~~~~~~~~~l~~fGi~i~~~~~~v~gr 586 (1073)
++++++|||||||.|+|||++.++|+++|+++||++++..|.+|++.|.++++.+.++.+++|++|||+|+++|++|+||
T Consensus 334 ~~~~~~ylP~Elc~i~~gQ~~~~~Lt~~q~s~mik~~~~~P~~R~~~I~~~~~~l~~~~~~~l~~fGi~i~~~~~~v~gR 413 (861)
T 4f3t_A 334 QEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIRATARSAPDRQEEISKLMRSASFNTDPYVREFGIMVKDEMTDVTGR 413 (861)
T ss_dssp CTTTTEEEEGGGEEECTTCBCCSCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCGGGCHHHHHTTCEECSSCEEEEEE
T ss_pred CCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCEEECCEEEEEEE
T ss_conf 88887525656689407844556689899999999875497999999999998716897568997797883875689779
Q ss_pred ECCCCCEEECCCCCCCCCCCCCCCEECCCCEEEECCEECEEEEEEECC--CCCHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 718994330589984335996651001273353072204269999468--855689999999999998842954589992
Q 001469 587 ILPAPWLKYHDTGKEKDCLPQVGQWNMMNKKMVNGGTVNHWICINFSR--HVQDSIARGFCFELAQMCYISGMAFNPEPV 664 (1073)
Q Consensus 587 vL~~P~i~y~~~~~~~~~~p~~G~Wn~~~~kf~~~~~i~~W~~v~~~~--~~~~~~~~~f~~~L~~~~~~~Gi~i~~~p~ 664 (1073)
|||||+|.|+++.+ ..+.|.+|+|||++++|++++++++|++++|.. ...++.++.|++.|.+.|+.+||.+...|.
T Consensus 414 vL~~P~I~y~~~~~-~~~~~~~g~W~~~~~~f~~~~~l~~W~vv~~~~~~~~~~~~~~~f~~~L~~~~~~~G~~i~~~p~ 492 (861)
T 4f3t_A 414 VLQPPSILYGGRNK-AIATPVQGVWDMRNKQFHTGIEIKVWAIACFAPQRQCTEVHLKSFTEQLRKISRDAGMPIQGQPC 492 (861)
T ss_dssp ECCCCCEECCSSSC-CEECCBTTBCCCTTCCCTBCCCBCCEEEEECSCTTTSCHHHHHHHHHHHHHHHHHHTCCBCSCCS
T ss_pred EECCCEEEECCCCC-CCCCCCCCCEECCCCEECCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCE
T ss_conf 82586488568764-33378878513569887027544405999845754445899999999999998507865479973
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHH
Q ss_conf 06899990559999999999998650699985099999508998404445576211357111445202102342668999
Q 001469 665 IPPISARPEHVEKVLKTRYHDAMTKLGQGKELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYMAN 744 (1073)
Q Consensus 665 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~lvl~ilp~~~~~~Y~~IK~~~d~~~GI~TQci~~~~~~k~~~q~~~N 744 (1073)
+.......+.++..++.+.+. . .++||||||||++ .++|+.||++||+++||+||||+.+++.|.++||+.|
T Consensus 493 ~~~~~~~~~~~~~~~~~l~~~----~---~~~qlvl~Ilp~~-~~~Y~~IK~~~~~~~gI~TQcv~~~~~~k~~~q~~~n 564 (861)
T 4f3t_A 493 FCKYAQGADSVEPMFRHLKNT----Y---AGLQLVVVILPGK-TPVYAEVKRVGDTVLGMATQCVQMKNVQRTTPQTLSN 564 (861)
T ss_dssp EEEECCSSSSHHHHHHHHHHH----S---TTCCEEEEEESSS-CTHHHHHHHHHHHTSCCEEEEEETHHHHSCCHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHH----C---CCCCEEEEEECCC-CCHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHH
T ss_conf 777258457899999999852----6---8983899995898-4289999997430678422899721225556789999
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEEECCCCHHH
Q ss_conf 99999852396233232110147776589991999997228999999998277999630788755336799971687266
Q 001469 745 VALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQEL 824 (1073)
Q Consensus 745 i~lKiN~KlGG~N~~l~~~~~~~~p~~~~~~tmiiG~DVsHp~~g~~~~pSiaavVaS~d~~~~~ky~~~~~~Q~~~~E~ 824 (1073)
|+||||+||||+||.+.+. ..|.+...+|||||+||+||++++...|||||||||+| .++++|.+.+++|.+++|+
T Consensus 565 i~lKiN~KlGG~n~~l~~~---~~~~~~~~~tmiiG~DV~H~~~~~~~~pSiaa~vaS~d-~~~~~y~~~~~~Q~~~~E~ 640 (861)
T 4f3t_A 565 LCLKINVKLGGVNNILLPQ---GRPPVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMD-AHPNRYCATVRVQQHRQEI 640 (861)
T ss_dssp HHHHHHHHTTCBCCEECST---TSCGGGGSCEEEEEEEEECCC----CCCEEEEEEEECS-SSSCCEEEEEEEESTTCCS
T ss_pred HHHHHHHHCCCCCEECCCC---CCCCCCCCCEEEEEEEECCCCCCCCCCCEEEEEEEECC-CCCCEEEEEEEECCCCCCH
T ss_conf 9999988619833044665---46534689658998772146888778865999999847-9856587899975899558
Q ss_pred HHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 55211003689766540579999999999980999944999825788157999999999999999995099999989999
Q 001469 825 IQDLFKTWQDPVRGAVSGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFV 904 (1073)
Q Consensus 825 I~dl~~~~~~p~~~~~~~~mi~e~L~~f~~~~~~~P~~IIiyRDGVSEGQf~~Vl~~El~~Ik~a~~~~~~~y~P~it~I 904 (1073)
|++| .+|++++|+.|++.++.+|++|||||||||||||.+|+++|+++|++||.+++++|+|+||||
T Consensus 641 i~~l-------------~~~~~~~L~~~~~~~~~~P~~IiiyRDGVsegq~~~v~~~Ev~~i~~a~~~~~~~~~P~it~I 707 (861)
T 4f3t_A 641 IQDL-------------AAMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFQQVLHHELLAIREACIKLEKDYQPGITFI 707 (861)
T ss_dssp CTTH-------------HHHHHHHHHHHHHHHSCCCSEEEEEEESCCGGGHHHHHHHHHHHHHHHHHHHCTTCCCEEEEE
T ss_pred HHHH-------------HHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEE
T ss_conf 9989-------------999999999999982899845999926877688999999999999999998544779857999
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCEEECCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHH
Q ss_conf 99312223222247999887778888867304205666788452450345774343358637999439988988899999
Q 001469 905 VVQKRHHTRLFANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLT 984 (1073)
Q Consensus 905 vv~KRHhtRff~~~~~~~~~~~~~~N~~pGTVVD~~It~p~~~DFyL~Sh~~~qGTarPthY~VL~De~~~~~d~Lq~lT 984 (1073)
||+||||||||+.+.++ ..++.+|++||||||++||||.+||||||||.++|||+|||||+||+||+++++|+||+||
T Consensus 708 vv~Krh~tRff~~~~~~--~~~~~~N~~pGTvVD~~it~p~~~dFyL~Sh~~~qGTarPthY~Vl~d~~~~~~d~lq~lt 785 (861)
T 4f3t_A 708 VVQKRHHTRLFCTDKNE--RVGKSGNIPAGTTVDTKITHPTEFDFYLCSHAGIQGTSRPSHYHVLWDDNRFSSDELQILT 785 (861)
T ss_dssp EEECCSCCCEEESSGGG--CBTTTTBCCTTEEECSSSSCSSBCEEEEECSCCCSSCCCCEEEEEEEETTCCCHHHHHHHH
T ss_pred EEECCCCCEEEECCCCC--CCCCCCCCCCCEECCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHH
T ss_conf 99725663562258753--3344689898401157502588777999888514136667668998379999999999999
Q ss_pred HHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 984305542357644562668799999997530276768999--875577788898888777667899988778999000
Q 001469 985 NNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSG--SMTSGTIGRGGMGGGVGARSTRGPGVGAAVRPLPAL 1062 (1073)
Q Consensus 985 ~~LCy~y~r~t~sVSip~P~yYA~l~a~Rar~~~~~~~~d~~--s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 1062 (1073)
|+|||+|+|||++||||+||||||++|+|||+|+.+...+++ |+.++.+. . ....+...++.|
T Consensus 786 y~Lc~~y~~~t~~vsvpaP~yYA~~~a~R~r~~l~~~~~~~~~~~~~~~~~~-------------~--~~~~~~~~~~~v 850 (861)
T 4f3t_A 786 YQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHTSGQSN-------------G--RDHQALAKAVQV 850 (861)
T ss_dssp HHHTTCCTTSSBCCSSCHHHHHHHHHHHHHHHHHCCC-------------------------------CCSTTHHHHTCC
T ss_pred HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC-------------C--CCHHHHHHHHHH
T ss_conf 9986552104788877628899999999999751101356776654468876-------------6--553555445343
Q ss_pred CCCCCCCEEEC
Q ss_conf 11023580419
Q 001469 1063 KENVKRVMFYC 1073 (1073)
Q Consensus 1063 h~~~~~~M~y~ 1073 (1073)
|++++++||||
T Consensus 851 h~~~~~~M~y~ 861 (861)
T 4f3t_A 851 HQDTLRTMYFA 861 (861)
T ss_dssp CHHHHTTTTTC
T ss_pred HHHHCCCCEEC
T ss_conf 16551583039
No 2
>4f1n_A Kpago; argonaute, RNAI, RNAse H, RNA binding protein-RNA complex; 3.19A {Vanderwaltozyma polyspora}
Probab=1.00 E-value=1 Score=1502.60 Aligned_cols=837 Identities=24% Similarity=0.378 Sum_probs=677.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCC---------------------CEEEEEEEECCCCCC-------
Q ss_conf 9999877568789999999982369711478565998---------------------526656897287653-------
Q 001469 192 APPSSKSVRFPLRPGRGSTGTRCIVKANHFFAELPDK---------------------DLHQYDVTITPEVTS------- 243 (1073)
Q Consensus 192 ~p~~~~~~~~p~RP~~Gt~G~~v~l~tN~f~i~~~~~---------------------~iy~YdV~i~pe~~~------- 243 (1073)
.+.++....+|.||+|||.|++|.||||||.+.+.+. .||+|+|+|.|+...
T Consensus 10 ~~~~~~~~~~p~Rp~yGt~G~~v~l~aN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~i~~~~~~~~~~~~~~~ 89 (1046)
T 4f1n_A 10 KEDTHAIYKVENRHDYGTKGTKVDILTNHILLAVGNDVPTEKIDKELVPKLDGWWKTAFIFTYHIDFKPQQKGPPRRGKP 89 (1046)
T ss_dssp --CCCCCCCCCBCCCCCCCSEEEEEEESEEEEECCTTSCTTTSCTTTSCCCCSTTTSCEEEEEEEEEC------------
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCC
T ss_conf 87761135478999889899678999637998547775433221112334443335415899889975645665444566
Q ss_pred -------HHHHHHHHHHHHHH--HHHHCCCCCCCEEECCCEEEECCCCC---CCCCEEEEEEE-----CCCCC-------
Q ss_conf -------02229999999999--98500498421561663278417789---99630899981-----59999-------
Q 001469 244 -------RGVNRAVMEQLVKL--YRESHLGKRLPAYDGRKSLYTAGPLP---FLSKEFRITLL-----DDDDG------- 299 (1073)
Q Consensus 244 -------k~~~r~i~~~l~~~--~~~~~~~~~~~~yDG~~~lys~~~L~---~~~~~~~v~~~-----~~~~~------- 299 (1073)
++..++|+.+|+++ .. ..+... +||||+++|||+.+|| +....+.|.+. ++.++
T Consensus 90 ~~~~~~~~~k~~~ii~~ll~e~~~~-~~~~~~-ia~d~~~~L~s~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~ 167 (1046)
T 4f1n_A 90 VPPQELSKPKKYELIEALLDEDEIL-YKYRDR-IAFNGEDTIYSHVPLEEFTLFDGCWEVSNKQKKKVVPGMGAPSNKAS 167 (1046)
T ss_dssp -----CCHHHHHHHHHHHHHSCTTT-GGGTTS-EEECSSSEEEESSCGGGSTTCTTCCC---------------------
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCHH-HHCCCC-EEECCCCCEEECCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCC
T ss_conf 7653221237999999999726135-642886-04647221687876776535777669865533446677665443322
Q ss_pred ----CCCCCCCCEEEEEEEEEEEECHHHHHHHHCCCCCCCH-----HHHHHHHHHHHCCCCCCC---CCCCC-CCCCCCC
Q ss_conf ----9998878489999999354074548987516899993-----789999999980499887---34556-5445999
Q 001469 300 ----QGGQRREREFKVVIKLAARADLHHLGLFLQGRQADAP-----QEALQVLDIVLRELPTTR---YCPVG-RSFYSPD 366 (1073)
Q Consensus 300 ----~~~~~~~~~~~v~ik~~~~~~l~~l~~~l~~~~~~~~-----~~~lq~Lniilr~~~~~~---~~~~G-r~ff~~~ 366 (1073)
.....++++|+|+|++++++++.+|.+||.+...+.+ .+++++|++||++.+... ..++| ++||..+
T Consensus 168 ~~~~~~~~~~~~~~~V~i~~~~~i~l~dL~~~l~~~~~~~~~~~~~~~~i~aL~~il~~~~~~~~~~i~~vg~nkFF~~~ 247 (1046)
T 4f1n_A 168 LQKKIDPELEEMVSQITLKFSGKVGLKDIYNDTTTQDTEVQESRMSAIDKTCLLSLLGAKFMSTDDLIFQVQGNKFFIFN 247 (1046)
T ss_dssp ----------CGGGGEEEEEEEEEEGGGGGSCSSCCCTTHHHHHHTCHHHHHHHHHHHHHHHCSSSCEEEETTTEEEECS
T ss_pred CCCCCCCCCCCCEEEEEEEEEEECCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCC
T ss_conf 23455555668459999987105179999999728985544333416789999999755655358964875784304679
Q ss_pred C-CCCCCCCCCEEEEECCEEEEECCCCCEEEEEECCEEEEECC-----------------CCHHHHHHHHHCCCC-----
Q ss_conf 9-99645899769972121221014780587540533347447-----------------619999999842799-----
Q 001469 367 L-GRRQPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEP-----------------LPVIDFVQQLLNRDV----- 423 (1073)
Q Consensus 367 ~-~~~~~lg~Gle~~~G~~~Svr~~~~~l~LniD~s~~~F~~~-----------------~~l~d~i~~~~~~~~----- 423 (1073)
. ....+|++|+|+|+|||+|||+++++|+||||+++++||++ ++|+|+|.++++..+
T Consensus 248 ~~~~~~~Lg~Gle~wrGffqSvRpa~~rLlLNvdvs~~aF~k~~~~~~~~~~~~~~~~~p~~lid~l~~~~~~~~~~~~~ 327 (1046)
T 4f1n_A 248 NFAKAIPFQIGGYLLQGFTVSLTHVYGGVALNTVSVPAPFIKHTKYLPGDPRFKNNEKEQFTLMDWIIECYHQSKAIRDI 327 (1046)
T ss_dssp TTCCEEECSSSEEEEEEEEEEEEEETTEEEEEEEEEEEEEECCSSSCTTSHHHHHCTTCCCCHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCCEEEEEEEEEEEEECCCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCC
T ss_conf 87751037881799976766678518940899725511178466667653100013568860999999986333332222
Q ss_pred -----CCCCCCHHHH-------HHHHHHHCCCEEEEEECC-------C-----CCCEEEEECCCCCCCCCEEEEECCC--
Q ss_conf -----9999996789-------999998159599993259-------8-----6633999445789987505541589--
Q 001469 424 -----SSRPLSDADR-------VKIKKALRGVRVEVTHRG-------N-----MRRKYRISGLTSQTTGELTFPVDES-- 477 (1073)
Q Consensus 424 -----~~~~~~~~~~-------~~i~~~Lkgl~V~~~~~~-------~-----~~r~~~I~~i~~~~a~~~~F~~~~~-- 477 (1073)
..+.++..++ .+++++|+||+|+++|.+ + ..+.++|.||+..++.+++|++++.
T Consensus 328 ~~~~~~~~~~~~~d~~~f~~~~~kl~k~LKgLkV~vth~~~~~~~~g~~~~~~~~r~k~I~GLs~~~a~~~~F~~~~~~~ 407 (1046)
T 4f1n_A 328 RYNPKTAPPPSVKDLNYFVEKNTDISALLKGLKVYRPYINYSINKDGTPKPPRKRSSKGIVGFTRESAVSMRFNVLESSL 407 (1046)
T ss_dssp SCTTTTSCCCCSSHHHHHHHHCHHHHHHHTTCEECCTTCC--------------CCCEECCEECSSCSSSCC--------
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEECCCCCC
T ss_conf 22322357875566544567889999984897899986675445566524434666469863468997731996168754
Q ss_pred -----------CCEEEHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf -----------937429999998819866789983799245886621134545851574333459999999999982299
Q 001469 478 -----------GTLKSVVEYFYETYGFVIQHTQWPCLQVGNQQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQR 546 (1073)
Q Consensus 478 -----------g~~isV~~Yf~~~Y~i~L~~p~lP~v~~g~~~~~~ylP~Elc~i~~gQ~~~~kl~~~q~~~mik~a~~~ 546 (1073)
++++||+|||+++|||+|+||+||||++|+. .+|||||||.|+|||+|+++|++ +++||++||++
T Consensus 408 ~~~~~~~~g~~~~~iTVadYFk~kYni~LkyP~LPcV~VG~~--~~ylPmElC~I~pGQr~~kKL~~--ts~MIKfAa~r 483 (1046)
T 4f1n_A 408 KKNSAPKPNEKPININTIDYFKRKYDITLKYPDMKLVNLGGK--NDVVPPECLTIVPGQKLKGQIFD--TKTYIDFSAIR 483 (1046)
T ss_dssp ---------------CHHHHHHHHSCCCCSCTTSCCEECSTT--TCEECGGGCCBCTTCBCCSCCCC--HHHHHHHHCCC
T ss_pred CCCCCCCCCCCCEEEEHHHHHHHHHCCCCCCCCCCEEEECCC--CCCCCCCEEEECCCCCCCCCCCC--HHHHHHHHCCC
T ss_conf 445666677675278899999987394047999877997897--74213104796689624512351--78999987569
Q ss_pred CHHHHHHHHHHHHH-----CCCCCCCCCCCCCEEECCCCEEEEEEECCCCCEEECCCCCC-------CCCCCCCCCEECC
Q ss_conf 26789999999983-----25999821121373872653187637718994330589984-------3359966510012
Q 001469 547 PHERERDIMQTVHH-----NAYHEDPYAREFGIKISEKLASVEARILPAPWLKYHDTGKE-------KDCLPQVGQWNMM 614 (1073)
Q Consensus 547 P~~R~~~I~~~~~~-----~~~~~~~~l~~fGi~i~~~~~~v~grvL~~P~i~y~~~~~~-------~~~~p~~G~Wn~~ 614 (1073)
|.+|++.|.+.... +.++.++++++|| +|+.+|++|+|||||||+|+|+++... ..+.|++|+|||+
T Consensus 484 P~eR~~~I~~~~~~~~~~~l~~~~~~~l~~FG-~I~~~m~~V~gRVLppP~L~Yg~~~~~~~~~p~~~~~~p~~G~Wnm~ 562 (1046)
T 4f1n_A 484 PTEKFDLISRLSMPAIKRGLTDSEKEESSAPH-NSAYQFMRVPSRILDAPVVQFKESTFEYKDKSYGTKHEESKGNWNMK 562 (1046)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCCC---------CCSSSCCEEEEEECCCCCEECSSCEECCCCCCSSSSGGGGTTBCCCT
T ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCC-CCCCCEEEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 49999999999887541024666557678628-75685036778874897576168754555565434457667852688
Q ss_pred CCEEEECCE-ECEEEEEEEC-C-C----CCHHHHHHHHHHHHHHHHHCCCCCCCC--CCCCC------C--CC-------
Q ss_conf 733530722-0426999946-8-8----556899999999999988429545899--92068------9--99-------
Q 001469 615 NKKMVNGGT-VNHWICINFS-R-H----VQDSIARGFCFELAQMCYISGMAFNPE--PVIPP------I--SA------- 670 (1073)
Q Consensus 615 ~~kf~~~~~-i~~W~~v~~~-~-~----~~~~~~~~f~~~L~~~~~~~Gi~i~~~--p~~~~------~--~~------- 670 (1073)
+++|++++. +..|.++++. . + ...+.+..|+..|++.|+.+||.+..+ |.+.. . ..
T Consensus 563 ~~kf~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~Gm~i~~~~~p~~~~~~~~~~~~~~~~~~~~r~ 642 (1046)
T 4f1n_A 563 GHQFISTPAKQVNLRAIFINNANTAPPASMESELDISMDKFASDVKQLGVDFNVSGKPILINQFGPPIKKFQGGGRGGRG 642 (1046)
T ss_dssp TCCCSBCCSSCEEEEEEEEECSSSCCCGGGHHHHHHHHHHHHHHHHTTTCCEECCSCCEEEESCCSCBC-----------
T ss_pred CCEEECCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 88771378666407999972787666542389999999999999986698547877874121345543111233433323
Q ss_pred --------------------CHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECC-CCCCHHHHHHHHHCCCCCEEEEE
Q ss_conf --------------------905599999999999986506999850999995089-98404445576211357111445
Q 001469 671 --------------------RPEHVEKVLKTRYHDAMTKLGQGKELDLLIVILPDN-NGSLYGDLKRICETDLGLVSQCC 729 (1073)
Q Consensus 671 --------------------~~~~~~~~l~~~~~~~~~~~~~~~~~~lvl~ilp~~-~~~~Y~~IK~~~d~~~GI~TQci 729 (1073)
..++.+..|..++++ . .+++|||||||++ +.++|+.||++||+++||+||||
T Consensus 643 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~---~~~~lvl~Ilp~~~~~~~Y~~IK~~~d~~~gV~TQcv 715 (1046)
T 4f1n_A 643 GRGSRGGRGGRGAPSGPPTFETSPGEISLLNLLEN----I---PSNTYILYVLRRGNDSAVYDRLKYITDLKFGALNSCV 715 (1046)
T ss_dssp -----------------CCCBCCTTHHHHHHHHHT----C---CTTEEEEEEESSSCCHHHHHHHHHHHTTTTCCCEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH----C---CCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCEEE
T ss_conf 33333333333344443211123179999999974----5---8997899996688871689999997613578144898
Q ss_pred EECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC----CCCCEEEEEEEECCCCCCCCCCCCEEEEEEEECC
Q ss_conf 202102342668999999998523962332321101477765----8999199999722899999999827799963078
Q 001469 730 LTKHVFKMSKQYMANVALKINVKVGGRNTVLVDAISRRIPLV----SDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDW 805 (1073)
Q Consensus 730 ~~~~~~k~~~q~~~Ni~lKiN~KlGG~N~~l~~~~~~~~p~~----~~~~tmiiG~DVsHp~~g~~~~pSiaavVaS~d~ 805 (1073)
+.+++.|.++||++||+||||+||||+||.|++.. ++.+ +..+|||||+||+|++++. .+||||||||+|
T Consensus 716 ~~~t~~k~~~q~~~NI~lKiN~KLGG~n~~l~~~~---~~~l~~~~~~~ptMiiG~DVtH~p~~~--~~SiaavVaS~d- 789 (1046)
T 4f1n_A 716 VWDNFKKNSIQYNSNVVMKMNLKLLGSNHSLSIEN---NKLLIDKESNLPILVLGSDVTHYPEKD--QNSIASLVGSYD- 789 (1046)
T ss_dssp EHHHHTTCCHHHHHHHHHHHHHHTTCBCCEECTTG---GGGGEETTTTEECEEEEEEEECCSSTT--CEEEEEEEECCS-
T ss_pred EHHHHCCCCHHHHHHHHHHHHHHCCCEEEECCCCC---CCCCCCCCCCCCEEEEEEEEECCCCCC--CCEEEEEEEEEC-
T ss_conf 42351354278999999999986098511436654---432344456773499853111179899--872669999987-
Q ss_pred CCCCCEEEEEEECCC-CHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH-CCCCCCEEEEEECCCCHHHHHHHHHHHH
Q ss_conf 875533679997168-72665521100368976654057999999999998-0999944999825788157999999999
Q 001469 806 PEVTKYAGLVCAQAH-RQELIQDLFKTWQDPVRGAVSGGMIKELLISFRRA-TGQKPQRIIFYRDGVSEGQFYQVLLYEL 883 (1073)
Q Consensus 806 ~~~~ky~~~~~~Q~~-~~E~I~dl~~~~~~p~~~~~~~~mi~e~L~~f~~~-~~~~P~~IIiyRDGVSEGQf~~Vl~~El 883 (1073)
.++++|.+.+++|.+ ++|+|++| ++|+.++|+.|++. ++.+|++|||||||||||||.+|+++|+
T Consensus 790 ~~~t~y~s~~~~Q~~~~~Eii~~L-------------~~~~~~~L~~y~~~n~~~lP~~IIiYRDGVSEGQf~~Vl~~Ev 856 (1046)
T 4f1n_A 790 DKFTQFPGDYMLQDGPGEEIITNV-------------GSLMLNRLKIYQKHNNGKLPTKIMYFRDGVSVDQFSQVVKIEV 856 (1046)
T ss_dssp SSCCCCCEEEEEEEEETCCSCTTG-------------GGGHHHHHHHHHHTTTTCCCSSEEEEEESCCGGGHHHHHHTHH
T ss_pred CCCCEEEEEEEEECCCCCCHHHHH-------------HHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHH
T ss_conf 985858359998458872489889-------------9999999999998637999857999806876577899999999
Q ss_pred HHHHHHHHHHC------CCCCCCEEEEEEEECCCCCCCCCCCCCCCC------CCCCCCCCCCEEECCCCCCCCCCCEEE
Q ss_conf 99999999509------999998999999312223222247999887------778888867304205666788452450
Q 001469 884 DAIRKACASLE------PNYQPPVTFVVVQKRHHTRLFANNHHDRNA------VDRSGNILPGTVVDSKICHPTEFDFYL 951 (1073)
Q Consensus 884 ~~Ik~a~~~~~------~~y~P~it~Ivv~KRHhtRff~~~~~~~~~------~~~~~N~~pGTVVD~~It~p~~~DFyL 951 (1073)
++|++||.++. ++|+|+||||||+||||||||+.+.++.+. .++++|++||||||++||||.+|||||
T Consensus 857 ~~Ik~a~~~~~~~~~~~~~y~Pkit~IVV~KRhhtRfF~~~~~~~d~~g~~~~~~~~~N~~pGTVVD~~It~p~~~DFyL 936 (1046)
T 4f1n_A 857 KSIKESVRKFGPQLNGGNKYDPPVTCIATVKRNQVRFIPIQENAKNEKGEEVAVQSMGNVMPGTVVDRGITSVAHFDFFI 936 (1046)
T ss_dssp HHHHHHHHHHTHHHHTSCCCCCCEEEEEEECSCSCCEEECCSEEECTTSCEEECEETTEECTTEEECSSSSCSSBEEEEE
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCEEEE
T ss_conf 99999999854300345577987799999657642351145554333344323456679999728646645667412899
Q ss_pred CCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 34577434335863799943998898889999998430554235764456266879999999753027676899987557
Q 001469 952 CSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSMTSG 1031 (1073)
Q Consensus 952 ~Sh~~~qGTarPthY~VL~De~~~~~d~Lq~lT~~LCy~y~r~t~sVSip~P~yYA~l~a~Rar~~~~~~~~d~~s~~~~ 1031 (1073)
|||.++|||||||||+||+||++|++|+||+|||+|||+|+|||++||||+||||||++|+|||+|+.....+..+..++
T Consensus 937 ~Sh~~~qGTarPthY~VL~De~~~~~d~lQ~LTy~LC~~y~r~t~sVsvPaP~yYAhlla~R~r~~~~~~~~~~~~~~~~ 1016 (1046)
T 4f1n_A 937 QSHQALKGTGVPCHYWCLYDENQSTSDYLQEICNNLCYIFGRSTTSVKVPAPVYYADLLCTRATCFFKAGFELNMAQAPK 1016 (1046)
T ss_dssp ECSCCCSSSCCCEEEEEEEESSCCCHHHHHHHHHHTTSCCTTSSBCCSSCHHHHHHHHHHHHHHHHHHHTSHHHHHCC--
T ss_pred ECCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 70334777665737999967999998999999999865533517886255789999999999999998641202222455
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf 778889888877766789998877899900011023580419
Q 001469 1032 TIGRGGMGGGVGARSTRGPGVGAAVRPLPALKENVKRVMFYC 1073 (1073)
Q Consensus 1032 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vh~~~~~~M~y~ 1073 (1073)
++.+ ++ ......+++|+.||++|+++||||
T Consensus 1017 -~~~~----------~~-~~~~~~~~~~~~~~~~~~~~mf~i 1046 (1046)
T 4f1n_A 1017 -EKGS----------KD-QPTVSKNVLLPQVNDNIKSVMYYI 1046 (1046)
T ss_dssp --------------------CCCHHHHSCCCCGGGTTSCTTC
T ss_pred -CCCC----------CC-CCCCCCCCCCCHHHHHHCCCEEEC
T ss_conf -6677----------66-555676654511335540152359
No 3
>2yhb_A QDE-2, post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; 3.65A {Neurospora crassa}
Probab=1.00 E-value=1 Score=874.59 Aligned_cols=413 Identities=31% Similarity=0.516 Sum_probs=352.3
Q ss_pred CCCCEEEE-CCEECEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 12733530-72204269999468855689999999999998842954589992-06899990559999999999998650
Q 001469 613 MMNKKMVN-GGTVNHWICINFSRHVQDSIARGFCFELAQMCYISGMAFNPEPV-IPPISARPEHVEKVLKTRYHDAMTKL 690 (1073)
Q Consensus 613 ~~~~kf~~-~~~i~~W~~v~~~~~~~~~~~~~f~~~L~~~~~~~Gi~i~~~p~-~~~~~~~~~~~~~~l~~~~~~~~~~~ 690 (1073)
|++++|++ ++++++|+++++..+.+.+.++.|++.|.+.|+.+||.+..+.. +... .. ++.+..+ .++++.+.
T Consensus 2 ~~~~~f~~p~~~l~~W~vv~~~~~~~~~~~~~f~~~l~~~~~~~G~~i~~p~~~~~~~-~~-~~~~~~~--~~~~~~~~- 76 (437)
T 2yhb_A 2 AMAVKVARPCRKIEKWTYLELKGSKANEGVPQAMTAFAEFLNRTGIPINPRFSPGMSM-SV-PGSEKEF--FAKVKELM- 76 (437)
T ss_dssp ---CCCSBCCCCBCSEEEEEEECSSCCCCHHHHHHHHHHHHHHTTCCBCSCCCCCEEE-EC-CSSHHHH--HHHHHHHH-
T ss_pred CCCCEECCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEECCCCCCCEEC-CC-CCHHHHH--HHHHHHCC-
T ss_conf 9888862699727779999912777879999999999999987697717998764103-77-8658887--99875045-
Q ss_pred CCCCCCEEEEEEEECCCCCCHHHHHHHHHCCCCCEEEEEEECCCCCCCHH--HHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 69998509999950899840444557621135711144520210234266--8999999998523962332321101477
Q 001469 691 GQGKELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQ--YMANVALKINVKVGGRNTVLVDAISRRI 768 (1073)
Q Consensus 691 ~~~~~~~lvl~ilp~~~~~~Y~~IK~~~d~~~GI~TQci~~~~~~k~~~q--~~~Ni~lKiN~KlGG~N~~l~~~~~~~~ 768 (1073)
.+++|||||||+++.++|..||++||+++||+||||+.+++.|.++| |+.||+||||+||||+||.|++. +
T Consensus 77 ---~~~~lvl~ilp~~~~~~Y~~iK~~~~~~~gI~TQcv~~~~~~k~~~q~s~~~Ni~lKiN~KlGG~n~~l~~~----~ 149 (437)
T 2yhb_A 77 ---SSHQFVVVLLPRKDVAIYNMVKRAADITFGVHTVCCVAEKFLSTKGQLGYFANVGLKVNLKFGGTNHNIKTP----I 149 (437)
T ss_dssp ---HTCSEEEEEESSCCHHHHHHHHHHHHTTSCCEEEEEEHHHHHCSTTHHHHHHHHHHHHHHHTTCBCCCCSSC----C
T ss_pred ---CCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCEEEEHHHHCCCCCHHHHHHHHHHHHHHHHCCCCEECCCC----C
T ss_conf ---898389999788983489999998701568541897266724766289999999999999849924023666----4
Q ss_pred CCCCCCCEEEEEEEECCCC---CC--CCCCCCEEEEEEEECCCCCCCEEEEEEECC-CCHHHHHHHHHCCCCCCCCCCHH
Q ss_conf 7658999199999722899---99--999982779996307887553367999716-87266552110036897665405
Q 001469 769 PLVSDRPTIIFGADVTHPH---PG--EDSSPSIAAVVASQDWPEVTKYAGLVCAQA-HRQELIQDLFKTWQDPVRGAVSG 842 (1073)
Q Consensus 769 p~~~~~~tmiiG~DVsHp~---~g--~~~~pSiaavVaS~d~~~~~ky~~~~~~Q~-~~~E~I~dl~~~~~~p~~~~~~~ 842 (1073)
|++.+.+|||||+||+||+ ++ ....|||||||||+| .++++|.+.+++|. +++|+|++| +
T Consensus 150 ~~~~~~~tmiiG~DV~H~~~~~~g~~~~~~pSiaa~vaS~d-~~~~~y~~~~~~Q~~~~~E~i~~l-------------~ 215 (437)
T 2yhb_A 150 PLLAKGKTMVVGYDVTHPTNLAAGQSPASAPSIVGLVSTID-QHLGQWPAMVWNNPHGQESMTEQF-------------T 215 (437)
T ss_dssp HHHHTTCEEEEEEEECCCSCCCTTCCSTTSCEEEEEEECCS-TTCCCCCEEEEEETTTHHHHHHHH-------------H
T ss_pred CCCCCCCEEEEEEEEECCCCCCCCCCCCCCCEEEEEEEECC-CCCCEEEEEEEECCCCCHHHHHHH-------------H
T ss_conf 54577877999888752565567776789997999987349-996744027898677644489999-------------9
Q ss_pred HHHHHHHHHHHH---HCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCEEEEEEEECCCCCCCCCC
Q ss_conf 799999999999---8099994499982578815799999999999999999509999-998999999312223222247
Q 001469 843 GMIKELLISFRR---ATGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNY-QPPVTFVVVQKRHHTRLFANN 918 (1073)
Q Consensus 843 ~mi~e~L~~f~~---~~~~~P~~IIiyRDGVSEGQf~~Vl~~El~~Ik~a~~~~~~~y-~P~it~Ivv~KRHhtRff~~~ 918 (1073)
+|++++|+.|++ +++.+|++|||||||||||||.+|+++|+++|++||.+++++| +|+||||||+||||||||+.+
T Consensus 216 ~~~~~~L~~~~~~~~~~~~~P~rIiiyRDGVseGqf~~V~~~El~~i~~a~~~~~~~~~~p~it~Ivv~Krh~tRff~~~ 295 (437)
T 2yhb_A 216 DKFKTRLELWRSNPANNRSLPENILIFRDGVSEGQFQMVIKDELPLVRAACKLVYPAGKLPRITLIVSVKRHQTRFFPTD 295 (437)
T ss_dssp HHHHHHHHHHHTCGGGTTCCCSEEEEEEESCCTTTHHHHHHHTHHHHHHHHHHHSCTTCCCEEEEEEEC-----------
T ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCEECCCC
T ss_conf 99999999998655433799863899917756677999999999999999998504367987799999714553254677
Q ss_pred CCCCCCCC-CCCCCCCCEEECCCCCCCCCCCEEECCCCCCCCCCCCCEEEEEECCC------CCCHHHHHHHHHHHHCCC
Q ss_conf 99988777-88888673042056667884524503457743433586379994399------889888999999843055
Q 001469 919 HHDRNAVD-RSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDEN------KFTADGLQSLTNNLCYTY 991 (1073)
Q Consensus 919 ~~~~~~~~-~~~N~~pGTVVD~~It~p~~~DFyL~Sh~~~qGTarPthY~VL~De~------~~~~d~Lq~lT~~LCy~y 991 (1073)
..+ .+ +++||+||||||++||||.+||||||||.++|||+|||||+||+||+ ++++|+||+|||+|||+|
T Consensus 296 ~~~---~~~~~~N~~pGTvVD~~it~p~~~dFyL~Sh~~~qGTarPthY~Vl~de~f~~~~~~~~~d~lq~lTy~Lc~~y 372 (437)
T 2yhb_A 296 PKH---IHFKSKSPKEGTVVDRGVTNVRYWDFFLQAHASLQGTARSAHYTVLVDEIFRADYGNKAADTLEQLTHDMCYLF 372 (437)
T ss_dssp -----------------------------------------------CEEEEEESSHHHHHGGGHHHHHHHHHHHHHTC-
T ss_pred CCC---CCCCCCCCCCCEEECCCCCCCCCCEEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 543---34466899985571564467777328997331210468763899993785432357999899999999987752
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 423576445626687999999975302767689--998755777888988887776678999887789990001102358
Q 001469 992 ARCTRSVSIVPPAYYAHLAAFRARFYMEPETSD--SGSMTSGTIGRGGMGGGVGARSTRGPGVGAAVRPLPALKENVKRV 1069 (1073)
Q Consensus 992 ~r~t~sVSip~P~yYA~l~a~Rar~~~~~~~~d--~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vh~~~~~~ 1069 (1073)
+|||++||||||+||||++|+|||+|+.....+ ++|+.++++ + .+...++++|++|+++
T Consensus 373 ~r~t~sVsipaP~yYAh~~a~R~r~~l~~~~~~~~~~~~~~~~~-------------~------~~~~~~~~~~~~l~~~ 433 (437)
T 2yhb_A 373 GRATKAVSICPPAYYADLVCDRARIHQKELFDALDENDSVKTDD-------------F------ARWGNSGAVHPNLRNS 433 (437)
T ss_dssp ---------CHHHHHHHHHHHHHHHHCHHHHHHHHHTSCCCHHH-------------H------HHHHHHTSCCGGGTTS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC-------------C------CCCCCCCCCCHHHCCC
T ss_conf 03158877487899999999999987454115777777667777-------------4------3222346659766378
Q ss_pred EEEC
Q ss_conf 0419
Q 001469 1070 MFYC 1073 (1073)
Q Consensus 1070 M~y~ 1073 (1073)
||||
T Consensus 434 mfyl 437 (437)
T 2yhb_A 434 MYYI 437 (437)
T ss_dssp CTTC
T ss_pred CEEC
T ss_conf 3569
No 4
>1yvu_A Hypothetical protein AQ_1447; RNAse H fold, RNA binding protein, gene regulation; 2.90A {Aquifex aeolicus} SCOP: b.34.14.1 c.55.3.10 PDB: 2f8s_A 2f8t_A 2nub_A
Probab=1.00 E-value=1 Score=867.64 Aligned_cols=658 Identities=14% Similarity=0.148 Sum_probs=497.1
Q ss_pred EEEEEEEECC-CCC---EEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCEEEECCCCCCCCCEEEEE
Q ss_conf 7114785659-985---266568972876530222999999999998500498421561663278417789996308999
Q 001469 217 KANHFFAELP-DKD---LHQYDVTITPEVTSRGVNRAVMEQLVKLYRESHLGKRLPAYDGRKSLYTAGPLPFLSKEFRIT 292 (1073)
Q Consensus 217 ~tN~f~i~~~-~~~---iy~YdV~i~pe~~~k~~~r~i~~~l~~~~~~~~~~~~~~~yDG~~~lys~~~L~~~~~~~~v~ 292 (1073)
..|.|++... ..+ +|+- +-|+...++++.-|+-.+. . .++.|......|++.+...+ .+-..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~----~----~~~~~~~~~~~~~~~~~~~~--~~~~~ 71 (706)
T 1yvu_A 6 LLNLYRIEYRPKDTTFTVFKP----THEIQKEKLNKVRWRVFLQ----T----GLPTFRREDEFWCAGKVEKD--TLYLT 71 (706)
T ss_dssp EESEEEEEECCSSCEEBCCEE----SSCCCHHHHHHHHHHHHHH----H----CSCEEEETTEEEESSCCTTC--CCEEE
T ss_pred HHHHHEEEECCCCCEEEEECC----HHHHHHHHHHHEEEEEEEE----C----CCCCCCCCCCCEECCCCCCC--EEEEE
T ss_conf 535442551367733676345----0788787641201476510----1----78652015310343520132--48998
Q ss_pred EECCCCCCCCCCCCCEEEEEEEEEEEECHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 81599999998878489999999354074548987516899993789999999980499887345565445999999645
Q 001469 293 LLDDDDGQGGQRREREFKVVIKLAARADLHHLGLFLQGRQADAPQEALQVLDIVLRELPTTRYCPVGRSFYSPDLGRRQP 372 (1073)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~v~ik~~~~~~l~~l~~~l~~~~~~~~~~~lq~Lniilr~~~~~~~~~~Gr~ff~~~~~~~~~ 372 (1073)
..++ . +|+|++++++..- .-..+.+++|+++++|+.. ..++..+||+||++. ....
T Consensus 72 ~~~~----------~--~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~-~l~~~~igr~~~~~~--~~~~ 127 (706)
T 1yvu_A 72 LSNG----------E--IVELKRVGEEEFR---------GFQNERECQELFRDFLTKT-KVKDKFISDFYKKFR--DKIT 127 (706)
T ss_dssp ECSS----------S--CEEEEECCCEECC---------CCSCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHH--HHHE
T ss_pred CCCC----------C--EEEEEEEEEEECC---------CCCCCHHHHHHHHHHHHHC-CCHHHHHCCCCCCCC--CCCC
T ss_conf 1799----------7--8999999886156---------7899989999999999975-774755172445833--5620
Q ss_pred C---CCCEEEEECCEEEEECCC-CCEEEEEECCEEEEECCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCEEEEE
Q ss_conf 8---997699721212210147-805875405333474476199999998427999999996789999998159599993
Q 001469 373 L---GEGLESWRGFYQSIRPTQ-MGLSLNIDMSSTAFIEPLPVIDFVQQLLNRDVSSRPLSDADRVKIKKALRGVRVEVT 448 (1073)
Q Consensus 373 l---g~Gle~~~G~~~Svr~~~-~~l~LniD~s~~~F~~~~~l~d~i~~~~~~~~~~~~~~~~~~~~i~~~Lkgl~V~~~ 448 (1073)
+ .+++|+|+||..||+..+ ++++||+|++|+ |.+..+|+|+|.+ ... .. ..+..+
T Consensus 128 i~~~~~~l~iwPG~~tsi~~~e~~~~~L~~DvshK-vlr~~Tvld~l~~-~~~------~~-------------~~~~~~ 186 (706)
T 1yvu_A 128 VQGKNRKIALIPEVNEKVLKSEEGYFLLHLDLKFR-IQPFETLQTLLER-NDF------NP-------------KRIRVK 186 (706)
T ss_dssp EECSSCEEEEEEEEEEEEEEBSSSCEEEEEEEEEE-EEESSCHHHHHHH-CCC------CC-------------TTCEEE
T ss_pred CCCCCCCEEECCCEEEEEEECCCCCEEEEEEEEEE-ECCCCHHHHHHHH-HHH------CC-------------HHHHHH
T ss_conf 56778767981686889885267875999973404-5566539999997-230------46-------------568864
Q ss_pred ECCCCCCEE--EEECC-CCCCCCCEEEEECCCCCEEEHHHHHHHHCCCC--------CCCCCCCEEEECCCCCCCCCCCC
Q ss_conf 259866339--99445-78998750554158993742999999881986--------67899837992458866211345
Q 001469 449 HRGNMRRKY--RISGL-TSQTTGELTFPVDESGTLKSVVEYFYETYGFV--------IQHTQWPCLQVGNQQRPNYLPME 517 (1073)
Q Consensus 449 ~~~~~~r~~--~I~~i-~~~~a~~~~F~~~~~g~~isV~~Yf~~~Y~i~--------L~~p~lP~v~~g~~~~~~ylP~E 517 (1073)
|. +++| +|.++ ++...+..+|. + |..+| ||+++|+++ .+.+.+|++..+. +. .|++
T Consensus 187 y~---n~ty~~riddi~~~~~~P~~~f~-~--g~~iS---Yyk~~~~~~q~ll~~r~~~~~~~~~~v~~~--~~--~p~~ 253 (706)
T 1yvu_A 187 PI---GIDFVGRVQDVFKAKEKGEEFFR-L--CMERS---THKSSKKAWEELLKNRELREKAFLVVLEKG--YT--YPAT 253 (706)
T ss_dssp ET---TCCCCEEEEEEEESTTSCHHHHH-H--HHHTC---SSHHHHHHHHHHHHCHHHHHHCEEEEETTS--CE--EEGG
T ss_pred CC---CCEECCCCCCCCCCCCCCCEEEC-C--CCCCC---EEECCCCCCHHHHHCCCCCCCCCEEEECCC--CC--CCCE
T ss_conf 32---55633365740046889513842-8--99755---585146754144430244567724884268--87--7864
Q ss_pred CEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCEEEEEEECCCCCEEECC
Q ss_conf 45851574333459999999999982299267899999999832599982112137387265318763771899433058
Q 001469 518 VCKIVEGQRYSKRLNERQITALLKVTCQRPHERERDIMQTVHHNAYHEDPYAREFGIKISEKLASVEARILPAPWLKYHD 597 (1073)
Q Consensus 518 lc~i~~gQ~~~~kl~~~q~~~mik~a~~~P~~R~~~I~~~~~~~~~~~~~~l~~fGi~i~~~~~~v~grvL~~P~i~y~~ 597 (1073)
+|.. --+..+|+++|+++|+++++.+|.+|.+.|.++++.+ +++|++|||+|+++|++|+|||||+|+|.+..
T Consensus 254 lL~p---lc~~t~Ltd~q~~~mik~t~~~P~~R~~~i~~~~~~~----~~~L~~fGi~i~~~~~~v~gRVLp~P~i~~~~ 326 (706)
T 1yvu_A 254 ILKP---VLTYENLEDEERNEVADIVRMEPGKRLNLIRYILRRY----VKALRDYGWYISPEEERAKGKLNFKDTVLDAK 326 (706)
T ss_dssp GEEE---CCCCC------HHHHTSTTSCCHHHHHHHHHHHHHHH----HHHHHTTTEEECSSCEECCEECCCCCCEECSS
T ss_pred EECC---CCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHH----HHHHHHCCCEECCCEEECCCEECCCCEEECCC
T ss_conf 4300---1213799999999999998259999999999999998----99999769888886422136873895066478
Q ss_pred CCCCCCCCCCCCCEECCCCEEEECCEECE---EEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHH
Q ss_conf 99843359966510012733530722042---699994688556899999999999988429545899920689999055
Q 001469 598 TGKEKDCLPQVGQWNMMNKKMVNGGTVNH---WICINFSRHVQDSIARGFCFELAQMCYISGMAFNPEPVIPPISARPEH 674 (1073)
Q Consensus 598 ~~~~~~~~p~~G~Wn~~~~kf~~~~~i~~---W~~v~~~~~~~~~~~~~f~~~L~~~~~~~Gi~i~~~p~~~~~~~~~~~ 674 (1073)
+.......+..+.|+++ .+|+.++.++. |.++ +..+ +..++.|++.|.+.|+.+||.++.++...... +.
T Consensus 327 g~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~lW~~i-~~~~--~~~~~~f~~~L~~~~~~~G~~i~~p~~~~~~~---~~ 399 (706)
T 1yvu_A 327 GKNTKVITNLRKFLELC-RPFVKKDVLSVEIISVSV-YKKL--EWRKEEFLKELINFLKNKGIKLKIKGKSLILA---QT 399 (706)
T ss_dssp CCEECCSSCCHHHHHHC-CCCCSCSEEEEEEEEEEC--------CHHHHHHHHHHHHHHTTTCEEEEEEEEEEEC---SS
T ss_pred CCCCEECCCCCCCCCCC-CCEECCCCCCCCEEEEEE-ECCH--HHHHHHHHHHHHHHHHHCCCEECCCCCCCCCC---HH
T ss_conf 97430236875430003-741114325643389998-1661--68999999999999987496206874223340---01
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCEEEEEEEECC-------CCCCHHHHHHHHHCCCCCEEEEEEECCCCCC-CHHHHHHHH
Q ss_conf 99999999999986506999850999995089-------9840444557621135711144520210234-266899999
Q 001469 675 VEKVLKTRYHDAMTKLGQGKELDLLIVILPDN-------NGSLYGDLKRICETDLGLVSQCCLTKHVFKM-SKQYMANVA 746 (1073)
Q Consensus 675 ~~~~l~~~~~~~~~~~~~~~~~~lvl~ilp~~-------~~~~Y~~IK~~~d~~~GI~TQci~~~~~~k~-~~q~~~Ni~ 746 (1073)
++..++.+.....+ ..+++|+|||+|++ +.++|..||++|+ ++||+||||+.+++.+. +.|++.||+
T Consensus 400 ~~~~~~~l~~~~~~----~~~~qlvlvIlp~~~~~~~~~~~~~Y~~IK~~~~-~~GI~TQcv~~~tl~~~~~~q~~~NI~ 474 (706)
T 1yvu_A 400 REEAKEKLIPVINK----IKDVDLVIVFLEEYPKVDPYKSFLLYDFVKRELL-KKMIPSQVILNRTLKNENLKFVLLNVA 474 (706)
T ss_dssp TTHHHHHHHHHHTT----TSSCSEEEEEEC----------CHHHHHHHHHHH-HTTCCCEEEEHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCC----CCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHH-CCCCCEEEEEHHHCCCCCHHHHHHHHH
T ss_conf 99999999987500----5899589999777444455567547999999985-289854998010216653078999999
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEEEEECCCC--CCCEEEEEEECCCCHHH
Q ss_conf 9998523962332321101477765899919999972289999999982779996307887--55336799971687266
Q 001469 747 LKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPE--VTKYAGLVCAQAHRQEL 824 (1073)
Q Consensus 747 lKiN~KlGG~N~~l~~~~~~~~p~~~~~~tmiiG~DVsHp~~g~~~~pSiaavVaS~d~~~--~~ky~~~~~~Q~~~~E~ 824 (1073)
||||+||||+||.|... ...+|||||+||+||+.+. ..||++|+|||+| .. +++|.+....| .++|+
T Consensus 475 lkiN~KLGG~nw~L~~~--------~~~~tmiIGiDVsH~~~~~-~~pSv~g~vas~d-~~g~~~~~~~~~~~q-~~~ei 543 (706)
T 1yvu_A 475 EQVLAKTGNIPYKLKEI--------EGKVDAFVGIDISRITRDG-KTVNAVAFTKIFN-SKGELVRYYLTSYPA-FGEKL 543 (706)
T ss_dssp HHHHHHTTCCSCEESCC--------TTCCSEEEEECEEECCCSS-SCCCEEEEEEEEC-TTSCEEEEEEEEECS-CTTHH
T ss_pred HHHHHHHCCEEEEECCC--------CCCCEEEEEEEEECCCCCC-CCCEEEEEEEEEC-CCCCEEEEEEEECCC-CCCHH
T ss_conf 99999849861560258--------8885599999886168788-8856999999985-899889999873366-64269
Q ss_pred HHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 55211003689766540579999999999980999944999825788157999999999999999995099999989999
Q 001469 825 IQDLFKTWQDPVRGAVSGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFV 904 (1073)
Q Consensus 825 I~dl~~~~~~p~~~~~~~~mi~e~L~~f~~~~~~~P~~IIiyRDGVSEGQf~~Vl~~El~~Ik~a~~~~~~~y~P~it~I 904 (1073)
++++ +..+|+.|.++++.+|++|||||||||| ++|+++|++||.+ |.|+||||
T Consensus 544 ~~~l----------------~~~~l~~~~~~~~~~P~rIIiyRDGVse-------~~El~~Ik~A~~~----~~pkit~I 596 (706)
T 1yvu_A 544 TEKA----------------IGDVFSLLEKLGFKKGSKIVVHRDGRLY-------RDEVAAFKKYGEL----YGYSLELL 596 (706)
T ss_dssp HHHH----------------HHHHHHHHHHTTCCTTCEEEEEESSCCC-------HHHHHHHHHHHHH----HTCEEEEE
T ss_pred HHHH----------------HHHHHHHHHHHCCCCCCEEEEEECCCCC-------HHHHHHHHHHHHH----CCCCEEEE
T ss_conf 9999----------------9999999998649998379999688885-------8999999999997----29947999
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCEEECCCCC-CCCCCCCCEEEEEECCCCCCHHHHHHH
Q ss_conf 9931222322224799988777888886730420566678845245034577-434335863799943998898889999
Q 001469 905 VVQKRHHTRLFANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAG-IQGTSRPAHYHVLWDENKFTADGLQSL 983 (1073)
Q Consensus 905 vv~KRHhtRff~~~~~~~~~~~~~~N~~pGTVVD~~It~p~~~DFyL~Sh~~-~qGTarPthY~VL~De~~~~~d~Lq~l 983 (1073)
||+||||||||+.+ ||+||||||. ..+||||++|.+ +|||+||+||+|+++|. ++|+||+|
T Consensus 597 vV~Krh~tRfF~~~-----------np~pGTvVD~-----~~~~ffL~ss~~~~qGT~rPthY~vv~~D~--~~d~Lq~l 658 (706)
T 1yvu_A 597 EIIKRNNPRFFSNE-----------KFIKGYFYKL-----SEDSVILATYNQVYEGTHQPIKVRKVYGEL--PVEVLCSQ 658 (706)
T ss_dssp EEECSSCCCEECSC-----------SCCTTEEEEB-----SSSEEEECCSCCCSTTCCCCEEEEEEECSS--CHHHHHHH
T ss_pred EEEECCCEEEECCC-----------CCCCEEEEEC-----CCCEEEEEECCCCCCCCCCCEEEEEEECCC--CHHHHHHH
T ss_conf 99704671587889-----------9997389972-----797699994477667887887999991899--99999999
Q ss_pred HHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf 99843055423576445626687999999975302767
Q 001469 984 TNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPE 1021 (1073)
Q Consensus 984 T~~LCy~y~r~t~sVSip~P~yYA~l~a~Rar~~~~~~ 1021 (1073)
||+|||+|+|||++||||+|+||||++|+|++.+++++
T Consensus 659 ty~Lc~ly~r~t~svslPaPiyYAhllA~r~~~~~~p~ 696 (706)
T 1yvu_A 659 ILSLTLMNYSSFQPIKLPATVHYSDKITKLMLRGIEPI 696 (706)
T ss_dssp HHHGGGGGCCSSSCCCSCTTTTTHHHHHHHHHTCSSCC
T ss_pred HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC
T ss_conf 99989860164899604758999999999997427811
No 5
>1u04_A Argonaute, hypothetical protein PF0537; RNAI, silencing, PIWI, PAZ, RISC, slicer, RNAse H hydrolase-gene regulation complex; 2.25A {Pyrococcus furiosus} SCOP: b.34.14.1 c.55.3.10 PDB: 1z25_A 1z26_A
Probab=1.00 E-value=1 Score=768.85 Aligned_cols=661 Identities=14% Similarity=0.091 Sum_probs=486.3
Q ss_pred CCEEEEEEEEEEC---CCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCE-EEECCCCCCCCCE
Q ss_conf 2369711478565---99852665689728765302229999999999985004984215616632-7841778999630
Q 001469 213 RCIVKANHFFAEL---PDKDLHQYDVTITPEVTSRGVNRAVMEQLVKLYRESHLGKRLPAYDGRKS-LYTAGPLPFLSKE 288 (1073)
Q Consensus 213 ~v~l~tN~f~i~~---~~~~iy~YdV~i~pe~~~k~~~r~i~~~l~~~~~~~~~~~~~~~yDG~~~-lys~~~L~~~~~~ 288 (1073)
++.|.+|||++.. |+ .+|+|+|++.|++..+ ....++. .++.. +| -.+|||..- ||+.++|+.
T Consensus 3 ~~~~~~n~~~~~~~~~~~-~~y~y~v~~~p~~~~~-~~~~~~~----~~~~~-~g--~~~fdg~~~~l~~~~~l~~---- 69 (771)
T 1u04_A 3 KAIVVINLVKINKKIIPD-KIYVYRLFNDPEEELQ-KEGYSIY----RLAYE-NV--GIVIDPENLIIATTKELEY---- 69 (771)
T ss_dssp EEEEEBSEEEBCGGGSCS-CEEEEEC-------------CCHH----HHHHH-TT--EEEEETTTTEEEESSCCCC----
T ss_pred CEEEEEEEEEEECCCCCC-EEEEEEEECCCHHHHH-HHHHHHH----HHHHH-CC--CEEECCCCEEEECCCEECC----
T ss_conf 069994068873246887-0599986238758889-9998999----87865-37--1896475203222532146----
Q ss_pred EEEEEECCCCCCCCCCCCCEEEEEEEEEEEECHHHHHHHHCCCCCCCHHHHHHHHHHHHCCC-CCCC-----CCCCCCCC
Q ss_conf 89998159999999887848999999935407454898751689999378999999998049-9887-----34556544
Q 001469 289 FRITLLDDDDGQGGQRREREFKVVIKLAARADLHHLGLFLQGRQADAPQEALQVLDIVLREL-PTTR-----YCPVGRSF 362 (1073)
Q Consensus 289 ~~v~~~~~~~~~~~~~~~~~~~v~ik~~~~~~l~~l~~~l~~~~~~~~~~~lq~Lniilr~~-~~~~-----~~~~Gr~f 362 (1073)
....++++++.+++++ +|++|+++|.. ...+ +..+||+|
T Consensus 70 ----------------~~~~~~~~~~~~~~~~-------------------~~~~n~i~r~~l~~~~~~~~~l~~~~r~~ 114 (771)
T 1u04_A 70 ----------------EGEFIPEGEISFSELR-------------------NDYQSKLVLRLLKENGIGEYELSKLLRKF 114 (771)
T ss_dssp ----------------SSCCEEEEEECGGGSC-------------------HHHHHHHHHHHHHHTTCSHHHHHHHHTTT
T ss_pred ----------------CCCEEEEEEEECCEEC-------------------HHHHHHHHHHHHHHCCCCHHHHHHHHHHC
T ss_conf ----------------8973789999904402-------------------99999999999987462058899976620
Q ss_pred CCCCCCCCCCCCCCEEEEECCEEEEECCCCCEEEEEECCEEEEECCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 59999996458997699721212210147805875405333474476199999998427999999996789999998159
Q 001469 363 YSPDLGRRQPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVQQLLNRDVSSRPLSDADRVKIKKALRG 442 (1073)
Q Consensus 363 f~~~~~~~~~lg~Gle~~~G~~~Svr~~~~~l~LniD~s~~~F~~~~~l~d~i~~~~~~~~~~~~~~~~~~~~i~~~Lkg 442 (1073)
|++ ..+ ..+++|+|+..|||..+++++||+|++|++ .+..+|+|+|.+.. .....+...+.|
T Consensus 115 ~~~-----~~~-~~~~~~~~~~tsi~~~e~~~ll~~di~hkv-~r~~t~~d~~~~~~-----------~~~~~~~~~~~g 176 (771)
T 1u04_A 115 RKP-----KTF-GDYKVIPSVEMSVIKHDEDFYLVIHIIHQI-QSMKTLWELVNKDP-----------KELEEFLMTHKE 176 (771)
T ss_dssp SCC-----EEE-TTEEEEEEEEEEEEECSSCEEEEEEEEEEE-EESSCHHHHTTTCH-----------HHHHHHHHHSTT
T ss_pred CCC-----CCC-CCCEEEECCEEEEEECCCCEEEEEEEEEEE-EEHHHHHHHHHHHH-----------HHHHHHHHHCCC
T ss_conf 798-----334-662799873466885378438999866567-55567999999999-----------999988873567
Q ss_pred CEEEEE--------ECCCCCCEEEEECCCCCCCCCE--EE---EECCCC-CEEEHHHHHHHHCCCCCCCCCCCEEEECCC
Q ss_conf 599993--------2598663399944578998750--55---415899-374299999988198667899837992458
Q 001469 443 VRVEVT--------HRGNMRRKYRISGLTSQTTGEL--TF---PVDESG-TLKSVVEYFYETYGFVIQHTQWPCLQVGNQ 508 (1073)
Q Consensus 443 l~V~~~--------~~~~~~r~~~I~~i~~~~a~~~--~F---~~~~~g-~~isV~~Yf~~~Y~i~L~~p~lP~v~~g~~ 508 (1073)
..|.+. |.-+ +++|+|+. .++..+.. +| ..+ ++ ..+++.+||+++|+| ++++||+|....+
T Consensus 177 ~~~~~~~~~~~~~vy~~n-~~~Y~~~~-~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~y~~~y~i--~d~~QPllvs~~~ 251 (771)
T 1u04_A 177 NLMLKDIASPLKTVYKPC-FEEYTKKP-KLDHNQEIVKYWYNYHIE-RYWNTPEAKLEFYRKFGQ--VDLKQPAILAKFA 251 (771)
T ss_dssp TCEEEETTSTTCCEEEEC-BCTTSSCB-CEECCHHHHHHHHHHHHH-HHCCSHHHHHHHHHHHCS--CCTTSCEEEEEES
T ss_pred CEEEEECCCCCEEEEECC-CCEEECCC-CCCCCCCCHHHEECEEEC-CCCCCCCHHHHHHHHCCC--CCCCCCEEEECCH
T ss_conf 378531134442686046-62441588-512378985440130213-778874116878876486--7678876985144
Q ss_pred C-------CCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHC-----CCCC--CCCCCCCCE
Q ss_conf 8-------6621134545851574333459999999999982299267899999999832-----5999--821121373
Q 001469 509 Q-------RPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPHERERDIMQTVHHN-----AYHE--DPYAREFGI 574 (1073)
Q Consensus 509 ~-------~~~ylP~Elc~i~~gQ~~~~kl~~~q~~~mik~a~~~P~~R~~~I~~~~~~~-----~~~~--~~~l~~fGi 574 (1073)
+ +.+||.||||.++. ...+++.+.+++|..++...|.+|.+.+.++.+.+ .-+. ...|+.|+
T Consensus 252 ~~~~~~~~~~i~LiPELc~~TG---~~~~~~~~~MK~la~~trl~P~~R~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~- 327 (771)
T 1u04_A 252 SKIKKNKNYKIYLLPQLVVPTY---NAEQLESDVAKEILEYTKLMPEERKELLENILAEVDSDIIDKSLSEIEVEKIAQ- 327 (771)
T ss_dssp CC-----CCCEEECTTTEEEEE---EGGGC----CCHHHHHHCCCHHHHHHHHHHHHHHCCCSSBCSSCCEEEEEECCG-
T ss_pred HHCCCCCCCEEEECHHHHHHCC---CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH-
T ss_conf 3246788960364247653367---435666899999999877798999999999999861544307988999975554-
Q ss_pred EECCCCEEEEEEECCCCCEEECCCCCCCCCCCCCCCEE--CCCCEEEECCE----EC------EEEEEEECCCCCHHHHH
Q ss_conf 87265318763771899433058998433599665100--12733530722----04------26999946885568999
Q 001469 575 KISEKLASVEARILPAPWLKYHDTGKEKDCLPQVGQWN--MMNKKMVNGGT----VN------HWICINFSRHVQDSIAR 642 (1073)
Q Consensus 575 ~i~~~~~~v~grvL~~P~i~y~~~~~~~~~~p~~G~Wn--~~~~kf~~~~~----i~------~W~~v~~~~~~~~~~~~ 642 (1073)
.++.. +.|.++++.+-.|...+. .....+.|. +++.+++.+.. ++ .|.++ ..++ .+.+.
T Consensus 328 ~l~~~-~~v~~~~~~~~~i~~~~~-----~~~~~adW~~~~~~~~~~~~~~~p~~l~~~~~i~~wil~-~~~~--~~~~~ 398 (771)
T 1u04_A 328 ELENK-IRVRDDKGNSVPISQLNV-----QKSQLLLWTNYSRKYPVILPYEVPEKFRKIREIPMFIIL-DSGL--LADIQ 398 (771)
T ss_dssp GGGSS-EEEECSSSCEEESCCC-------------CGGGGSCCCCCCCCSBCCTHHHHCCCCCEEEEE-ETTS--CHHHH
T ss_pred CCCCC-CCCCCCCCCCCCEEECCC-----CCCCCCCCCHHHCCCCCEECCCCHHHHHCCCCCCEEEEE-ECCC--HHHHH
T ss_conf 11767-500254566453263276-----777667760553778511046542655043555359999-5771--68899
Q ss_pred HHH---------HHHHHHHHHCC-----------CCCCCC-----CC-CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 999---------99999988429-----------545899-----92-06899990559999999999998650699985
Q 001469 643 GFC---------FELAQMCYISG-----------MAFNPE-----PV-IPPISARPEHVEKVLKTRYHDAMTKLGQGKEL 696 (1073)
Q Consensus 643 ~f~---------~~L~~~~~~~G-----------i~i~~~-----p~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 696 (1073)
+|+ ..|.+.+..++ +.+... +. +.....+.+.++..++.+.+.. + ...+
T Consensus 399 ~f~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~p~~~~~~~~~~i~~dl~~~~~i~~~l~~~~~~~----~-~~~~ 473 (771)
T 1u04_A 399 NFATNEFRELVKSMYYSLAKKYNSLAKKARSTNEIGLPFLDFRGKEKVITEDLNSDKGIIEVVEQVSSFM----K-GKEL 473 (771)
T ss_dssp HHHHHHHHHHHHHHCC-----------------------------CEEEEECTTSHHHHHHHHHHHHHHH----T-TCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHC----C-CCCC
T ss_conf 8888876667789999875322310110356642257873334675143156553477999999999751----5-7898
Q ss_pred EEEEEEEE-CCCCCCHHHHHHHHHCCCCCEEEEEEECCCCCC----C-----HHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 09999950-899840444557621135711144520210234----2-----6689999999985239623323211014
Q 001469 697 DLLIVILP-DNNGSLYGDLKRICETDLGLVSQCCLTKHVFKM----S-----KQYMANVALKINVKVGGRNTVLVDAISR 766 (1073)
Q Consensus 697 ~lvl~ilp-~~~~~~Y~~IK~~~d~~~GI~TQci~~~~~~k~----~-----~q~~~Ni~lKiN~KlGG~N~~l~~~~~~ 766 (1073)
+|+||+++ .++.+.|..||+.| ++.||+||||..+|+.+. + .+++.||+||||+||||+||.|+.
T Consensus 474 ~lvlv~l~~~~~~d~Y~~IK~~~-~~~gIpTQcV~~~Tl~~~~~k~~~~~l~~sia~NIalqIn~KLGG~pW~L~~---- 548 (771)
T 1u04_A 474 GLAFIAARNKLSSEKFEEIKRRL-FNLNVISQVVNEDTLKNKRDKYDRNRLDLFVRHNLLFQVLSKLGVKYYVLDY---- 548 (771)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH-HHTTEEEEEEEHHHHHHCEETTEEEEECHHHHHHHHHHHHHHTTCBCCEESC----
T ss_pred CEEEEEECCCCCCCHHHHHHHHH-HCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECC----
T ss_conf 78999975898866689999998-5489663998435006765443323132899999999999985983326068----
Q ss_pred CCCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEEECCCCHHHHHHHHHCCCCCCCCCCHHHHHH
Q ss_conf 77765899919999972289999999982779996307887553367999716872665521100368976654057999
Q 001469 767 RIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIK 846 (1073)
Q Consensus 767 ~~p~~~~~~tmiiG~DVsHp~~g~~~~pSiaavVaS~d~~~~~ky~~~~~~Q~~~~E~I~dl~~~~~~p~~~~~~~~mi~ 846 (1073)
| ..+|||||+||+|++++. .++|++|+|+|.| ....+|.+.+..|.++ |+|. + ..|++
T Consensus 549 --p---~~~tmiIGiDV~H~~~~~-~svs~~A~V~s~d-g~~~~~~s~~~~~~~~-E~i~-l-------------~~~l~ 606 (771)
T 1u04_A 549 --R---FNYDYIIGIDVAPMKRSE-GYIGGSAVMFDSQ-GYIRKIVPIKIGEQRG-ESVD-M-------------NEFFK 606 (771)
T ss_dssp --C---CSSSEEEEEEEEEECCTT-TCEEEEEEEEETT-SCEEEEEEEECCCCSS-SSCC-H-------------HHHHH
T ss_pred --C---CCCEEEEEEEEECCCCCC-CCEEEEEEEECCC-CCEEEEEEEEEECCCC-CEEC-H-------------HHHHH
T ss_conf --9---998799999987479899-7469999997799-9789998887303776-3773-9-------------99999
Q ss_pred HHHHHHHHH-CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 999999998-0999944999825788157999999999999999995099999989999993122232222479998877
Q 001469 847 ELLISFRRA-TGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHHDRNAV 925 (1073)
Q Consensus 847 e~L~~f~~~-~~~~P~~IIiyRDGVSEGQf~~Vl~~El~~Ik~a~~~~~~~y~P~it~Ivv~KRHhtRff~~~~~~~~~~ 925 (1073)
++|..|++. ++.+|+||||||||+ |+++|+++|++||.+. .|+||||+|+|||||||| .+
T Consensus 607 ~~L~~y~~~n~~~lP~RIIiyRDG~-------v~~~El~~i~ea~~~~----~p~itfIvV~Krh~tRfF-~~------- 667 (771)
T 1u04_A 607 EMVDKFKEFNIKLDNKKILLLRDGR-------ITNNEEEGLKYISEMF----DIEVVTMDVIKNHPVRAF-AN------- 667 (771)
T ss_dssp HHHHHHHHTTCCCTTCEEEEECSBC-------CCHHHHHHHHHHHHHH----TCEEEEEEEESCCCCCBS-SC-------
T ss_pred HHHHHHHHHHCCCCCCEEEEECCCC-------CCHHHHHHHHHHHHHC----CCCEEEEEEEECCCEEEE-CC-------
T ss_conf 9999999970799997799991888-------8789999999999855----998899999945751564-69-------
Q ss_pred CCCCCCCCCEEECCCCCCCCCCCEEECCCC--CCCCCCCCCEE--EEEECCCCCC----HHHHHHHHHHHHCCCCCCCC-
Q ss_conf 788888673042056667884524503457--74343358637--9994399889----88899999984305542357-
Q 001469 926 DRSGNILPGTVVDSKICHPTEFDFYLCSHA--GIQGTSRPAHY--HVLWDENKFT----ADGLQSLTNNLCYTYARCTR- 996 (1073)
Q Consensus 926 ~~~~N~~pGTVVD~~It~p~~~DFyL~Sh~--~~qGTarPthY--~VL~De~~~~----~d~Lq~lT~~LCy~y~r~t~- 996 (1073)
.+|||||| . ||||+||. ++|||+||+|| +||+|+++++ +|+||.|||+|||+|+||++
T Consensus 668 -----~~pGTVV~-------~-DFyL~Sh~v~~~qGTprPthY~~~Vi~D~~~~~~~~~~D~lq~lty~Lchlyyn~~~~ 734 (771)
T 1u04_A 668 -----MKMYFNLG-------G-AIYLIPHKLKQAKGTPIPIKLAKKRIIKNGKVEKQSITRQDVLDIFILTRLNYGSISA 734 (771)
T ss_dssp -----SCEEEEET-------T-EEEEECSCCSSSCSCCCCEEEEEEEEEETTEEEECCCCHHHHHHHHHHHTCCTTCSSC
T ss_pred -----CCCEEEEE-------C-CEEEEECCCCCCCCCCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC
T ss_conf -----99804996-------8-8899834545888888878999788752788787778999999999865501457999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf 6445626687999999975302767
Q 001469 997 SVSIVPPAYYAHLAAFRARFYMEPE 1021 (1073)
Q Consensus 997 sVSip~P~yYA~l~a~Rar~~~~~~ 1021 (1073)
+||+|+||||||++|++++.++..+
T Consensus 735 svrvPAP~~YAhklA~lvgq~~~~~ 759 (771)
T 1u04_A 735 DMRLPAPVHYAHKFANAIRNEWKIK 759 (771)
T ss_dssp CCCSCHHHHHHHHHHHHHHTTCCCC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 9647812799999999997662457
No 6
>2yha_A Post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; HET: GOL; 1.85A {Neurospora crassa} PDB: 2xdy_A
Probab=1.00 E-value=1 Score=718.89 Aligned_cols=365 Identities=30% Similarity=0.486 Sum_probs=308.6
Q ss_pred CCCCEEEE-CCEECEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 12733530-72204269999468855689999999999998842954589992-06899990559999999999998650
Q 001469 613 MMNKKMVN-GGTVNHWICINFSRHVQDSIARGFCFELAQMCYISGMAFNPEPV-IPPISARPEHVEKVLKTRYHDAMTKL 690 (1073)
Q Consensus 613 ~~~~kf~~-~~~i~~W~~v~~~~~~~~~~~~~f~~~L~~~~~~~Gi~i~~~p~-~~~~~~~~~~~~~~l~~~~~~~~~~~ 690 (1073)
|++++|++ ++++++|++++|..+.+.+.++.|++.|.+.|+.+||.++.+.. +... . .++.+..+ .++++.+.
T Consensus 2 ~~~~~f~~p~~~l~~W~vv~~~~~~~~~~~~~f~~~l~~~~~~~G~~i~~p~~~~~~~-~-~~~~~~~~--~~~~~~~~- 76 (388)
T 2yha_A 2 AMAVKVARPCRKIEKWTYLELKGSKANEGVPQAMTAFAEFLNRTGIPINPRFSPGMSM-S-VPGSEKEF--FAKVKELM- 76 (388)
T ss_dssp ---CCCSBCCSCBCSEEEEEEECSSCCCCHHHHHHHHHHHHHHTTCCBCSCCCCCEEE-E-CCSSHHHH--HHHHHHHH-
T ss_pred CCCCEECCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEECCCCCCCEEC-C-CCCHHHHH--HHHHHHCC-
T ss_conf 9888851699727789999902777879999999999999987697747998754103-7-78638785--89875045-
Q ss_pred CCCCCCEEEEEEEECCCCCCHHHHHHHHHCCCCCEEEEEEECCCCCCCHH--HHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 69998509999950899840444557621135711144520210234266--8999999998523962332321101477
Q 001469 691 GQGKELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQ--YMANVALKINVKVGGRNTVLVDAISRRI 768 (1073)
Q Consensus 691 ~~~~~~~lvl~ilp~~~~~~Y~~IK~~~d~~~GI~TQci~~~~~~k~~~q--~~~Ni~lKiN~KlGG~N~~l~~~~~~~~ 768 (1073)
.++||||||||+++.++|+.||++||+++||+||||+.+++.|.++| |++||+||||+||||+||.|++. +
T Consensus 77 ---~~~~lvl~ilp~~~~~~Y~~iK~~~~~~~GI~TQcv~~~~~~k~~~q~s~~~NI~lKiN~KlGG~n~~l~~~----~ 149 (388)
T 2yha_A 77 ---SSHQFVVVLLPRKDVAIYNMVKRAADITFGVHTVCCVAEKFLSTKGQLGYFANVGLKVNLKFGGTNHNIKTP----I 149 (388)
T ss_dssp ---HTCSEEEEEESSSCHHHHHHHHHHHHTTTCCEEEEEEHHHHHCSTTHHHHHHHHHHHHHHHTTCBCCCCCSC----C
T ss_pred ---CCCEEEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEHHHHCCCCCHHHHHHHHHHHHHHHHCCCCEECCCC----C
T ss_conf ---898299999789983489999998710579750898345605767489999999999999718933122566----5
Q ss_pred CCCCCCCEEEEEEEECCCC---CC--CCCCCCEEEEEEEECCCCCCCEEEEEEECC-CCHHHHHHHHHCCCCCCCCCCHH
Q ss_conf 7658999199999722899---99--999982779996307887553367999716-87266552110036897665405
Q 001469 769 PLVSDRPTIIFGADVTHPH---PG--EDSSPSIAAVVASQDWPEVTKYAGLVCAQA-HRQELIQDLFKTWQDPVRGAVSG 842 (1073)
Q Consensus 769 p~~~~~~tmiiG~DVsHp~---~g--~~~~pSiaavVaS~d~~~~~ky~~~~~~Q~-~~~E~I~dl~~~~~~p~~~~~~~ 842 (1073)
|++.+.+|||||+||+||+ +| ....|||||||||+| .++++|.+.+++|. +++|+|++| +
T Consensus 150 ~~~~~~~tmiiG~DV~H~~~~~~g~~~~~~pSiaavVaS~d-~~~~~y~~~~~~Q~~~~~E~i~~l-------------~ 215 (388)
T 2yha_A 150 PLLAKGKTMVVGYDVTHPTNLAAGQSPASAPSIVGLVSTID-QHLGQWPAMVWNNPHGQESMTEQF-------------T 215 (388)
T ss_dssp HHHHTSCEEEEEEEEECSCCCSSSSCCTTSCEEEEEEECCS-TTCCCCCEEEEEETTTHHHHHHHH-------------H
T ss_pred CCCCCCCEEEEEEEEECCCCCCCCCCCCCCCEEEEEEEECC-CCCCEEEEEEEECCCCCCCHHHHH-------------H
T ss_conf 54577877999877751565677776789987999877759-997779789998688862579999-------------9
Q ss_pred HHHHHHHHHHHH---HCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCEEEEEEEECCCCCCCCCC
Q ss_conf 799999999999---8099994499982578815799999999999999999509999-998999999312223222247
Q 001469 843 GMIKELLISFRR---ATGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNY-QPPVTFVVVQKRHHTRLFANN 918 (1073)
Q Consensus 843 ~mi~e~L~~f~~---~~~~~P~~IIiyRDGVSEGQf~~Vl~~El~~Ik~a~~~~~~~y-~P~it~Ivv~KRHhtRff~~~ 918 (1073)
+|++++|+.|++ +++.+|++|||||||||||||.+|+++|+++|++||.+++.+| .|+||||||+||
T Consensus 216 ~~~~~~L~~~~~~~~~~~~~P~rIiiyRDGVseGQf~~V~~~El~~i~~a~~~~~~~~~~P~it~Ivv~Kr--------- 286 (388)
T 2yha_A 216 DKFKTRLELWRSNPANNRSLPENILIFRDGVSEGQFQMVIKDELPLVRAACKLVYPAGKLPRITLIVSVKG--------- 286 (388)
T ss_dssp HHHHHHHHHHHHSGGGTTCCCSEEEEEEESCCGGGHHHHHHHTHHHHHHHHHHHSCTTCCCEEEEEEEC-----------
T ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCC---------
T ss_conf 99999999998756543789752899946867257999999999999999998514467986799996466---------
Q ss_pred CCCCCCCCCCCCCCCCEEECCCCCCCCCCCEEECCCCCCCCCCCCCEEEEEECCC------CCCHHHHHHHHHHHHCCCC
Q ss_conf 9998877788888673042056667884524503457743433586379994399------8898889999998430554
Q 001469 919 HHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDEN------KFTADGLQSLTNNLCYTYA 992 (1073)
Q Consensus 919 ~~~~~~~~~~~N~~pGTVVD~~It~p~~~DFyL~Sh~~~qGTarPthY~VL~De~------~~~~d~Lq~lT~~LCy~y~ 992 (1073)
+|||||+||+||+ ++++|+||+|||+|||+|+
T Consensus 287 ------------------------------------------arPthY~Vl~De~f~~~~~~~~~d~lq~lty~Lc~~y~ 324 (388)
T 2yha_A 287 ------------------------------------------SGSAHYTVLVDEIFRADYGNKAADTLEQLTHDMCYLFG 324 (388)
T ss_dssp ----------------------------------------------CEEEEEESSHHHHHGGGHHHHHHHHHHHHHHC--
T ss_pred ------------------------------------------CCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf ------------------------------------------68826999827864334579999999999999977753
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 23576445626687999999975302767689--9987557778889888877766789998877899900011023580
Q 001469 993 RCTRSVSIVPPAYYAHLAAFRARFYMEPETSD--SGSMTSGTIGRGGMGGGVGARSTRGPGVGAAVRPLPALKENVKRVM 1070 (1073)
Q Consensus 993 r~t~sVSip~P~yYA~l~a~Rar~~~~~~~~d--~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vh~~~~~~M 1070 (1073)
|||++||||+|+||||++|+|||+|+.+..++ ++|+.++++ ..+...++++|++|+++|
T Consensus 325 r~t~sVsipaP~yYAh~~a~R~r~~l~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~l~~~m 385 (388)
T 2yha_A 325 RATKAVSICPPAYYADLVCDRARIHQKELFDALDENDSVKTDD-------------------FARWGNSGAVHPNLRNSM 385 (388)
T ss_dssp --------CHHHHHHHHHHHHHHHHCHHHHHHHTTCSCCCHHH-------------------HHHHHHHTCCCGGGTTSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC-------------------CCCCCCCCCCCHHHCCCC
T ss_conf 3258877575899999999999998554126777666667776-------------------433223466597763784
Q ss_pred EEC
Q ss_conf 419
Q 001469 1071 FYC 1073 (1073)
Q Consensus 1071 ~y~ 1073 (1073)
|||
T Consensus 386 fyl 388 (388)
T 2yha_A 386 YYI 388 (388)
T ss_dssp TTC
T ss_pred EEC
T ss_conf 369
No 7
>3ho1_A Argonaute; argonaute, protein-DNA-RNA complex, nucleic acid binding Pro RNA complex; 2.60A {Thermus thermophilus} PDB: 3dlb_A* 3dlh_A* 3f73_A* 3hm9_A 3hvr_A 3hxm_A* 3hk2_A 3hjf_A
Probab=1.00 E-value=1 Score=700.69 Aligned_cols=641 Identities=17% Similarity=0.164 Sum_probs=469.8
Q ss_pred CCCEEEEEEEEEE-CC--CCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCEEEECCCCCCCCCE
Q ss_conf 8236971147856-59--98526656897287653022299999999999850049842156166327841778999630
Q 001469 212 TRCIVKANHFFAE-LP--DKDLHQYDVTITPEVTSRGVNRAVMEQLVKLYRESHLGKRLPAYDGRKSLYTAGPLPFLSKE 288 (1073)
Q Consensus 212 ~~v~l~tN~f~i~-~~--~~~iy~YdV~i~pe~~~k~~~r~i~~~l~~~~~~~~~~~~~~~yDG~~~lys~~~L~~~~~~ 288 (1073)
.++.|.-|-|.++ +. +.+.|.|++.+.|....... ..++..++. + .|.. +--....|+|..+ |- ...
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~--~~~~--~~~~~~~~~~~~~-~~-~~~ 74 (685)
T 3ho1_A 5 GKTEVFLNRFALRPLNPEELRPWRLEVVLDPPPGREEV-YPLLAQVAR---R--AGGV--TVRMGDGLASWSP-PE-VLV 74 (685)
T ss_dssp CCEEEEEEEEEEEECCTTTSSCEEEEEEEESCCCTTTH-HHHHHHHHH---H--TCSS--EEEETTEEEESSC-TT-TSC
T ss_pred CCEEEEEEEEECCCCCHHHCCEEEEEEECCCCCCCCHH-HHHHHHHHH---H--HCCE--EEEECCCEECCCC-CH-HHH
T ss_conf 52058975003454885348505899850799884147-789999998---7--3874--7863274000467-05-541
Q ss_pred EEEEEECCCCCCCCCCCCCEEEEEEEEEEEECHHHHHHHHCCCCCCCHHHHHHHH-----HHHHCCCCCCCCCCCCCCCC
Q ss_conf 8999815999999988784899999993540745489875168999937899999-----99980499887345565445
Q 001469 289 FRITLLDDDDGQGGQRREREFKVVIKLAARADLHHLGLFLQGRQADAPQEALQVL-----DIVLRELPTTRYCPVGRSFY 363 (1073)
Q Consensus 289 ~~v~~~~~~~~~~~~~~~~~~~v~ik~~~~~~l~~l~~~l~~~~~~~~~~~lq~L-----niilr~~~~~~~~~~Gr~ff 363 (1073)
++=++.. .+....|++.-.-.+.+|...- ..++++..| +-.|+.. +++..-|.-.+
T Consensus 75 ~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 135 (685)
T 3ho1_A 75 LEGTLAR-------MGQTYAYRLYPKGRRPLDPKDP----------GERSVLSALARRLLQERLRRL--EGVWVEGLAVY 135 (685)
T ss_dssp CEEEEEC-------SSCEEEEEEEEEEECCCCTTSH----------HHHHHHHHHHHHHHHHHHHTC--SSSEEETTEEE
T ss_pred CCCHHCC-------CCCCCCEEEEECCCCCCCCCCH----------HHHHHHHHHHHHHHHHHHHHH--HCEEECCEEEE
T ss_conf 0220002-------3688663653056645788986----------788999999999999998765--33377647898
Q ss_pred CCCCCCCCCCCCCEEEEECCEEEEECCC-CCEEEEEECCEEEEECCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 9999996458997699721212210147-805875405333474476199999998427999999996789999998159
Q 001469 364 SPDLGRRQPLGEGLESWRGFYQSIRPTQ-MGLSLNIDMSSTAFIEPLPVIDFVQQLLNRDVSSRPLSDADRVKIKKALRG 442 (1073)
Q Consensus 364 ~~~~~~~~~lg~Gle~~~G~~~Svr~~~-~~l~LniD~s~~~F~~~~~l~d~i~~~~~~~~~~~~~~~~~~~~i~~~Lkg 442 (1073)
-.. ..-|.|.|+.+|+...|-++. ++++|.||+.+. |+.+.++.+++.+.. . |.
T Consensus 136 ~~~----~~~~~~~~~~~g~~~~v~~~~~~~~~l~vd~~~r-~~~~~~~~~~l~~~~------------------~-~~- 190 (685)
T 3ho1_A 136 RRE----HARGPGWRVLGGAVLDLWVSDSGAFLLEVDPAYR-ILCEMSLEAWLAQGH------------------P-LP- 190 (685)
T ss_dssp EEE----EEEETTEEEEEEEEEEEEECSSSEEEEEEEEEEE-EEECSCHHHHHHHSC------------------C-CC-
T ss_pred EEC----CCCCCCEEEECCEEEEEEECCCCCEEEEEEEHEE-ECCHHHHHHHHHHCC------------------C-CC-
T ss_conf 406----8877743884366999998778867999740301-147644999998179------------------8-32-
Q ss_pred CEEEEEECCCCCCEEEEECCCCCCCCCEEEEECCCCCEEEHHHHHHHHCCCCCCCCCCCEEEECCCC----C-----CCC
Q ss_conf 5999932598663399944578998750554158993742999999881986678998379924588----6-----621
Q 001469 443 VRVEVTHRGNMRRKYRISGLTSQTTGELTFPVDESGTLKSVVEYFYETYGFVIQHTQWPCLQVGNQQ----R-----PNY 513 (1073)
Q Consensus 443 l~V~~~~~~~~~r~~~I~~i~~~~a~~~~F~~~~~g~~isV~~Yf~~~Y~i~L~~p~lP~v~~g~~~----~-----~~y 513 (1073)
..|.++|+ .++|+|.+|+. .+++..|. + + .+|++||+++||.+ +.-++|.|+...+. + .+|
T Consensus 191 ~~v~~~y~---~~~~~~~~~~~-~~p~~~~l-~--~-~~s~~~y~~~k~~~--~~~~~~~vv~~~~~~~~~~~i~~~~~~ 260 (685)
T 3ho1_A 191 KRVRNAYD---RRTWELLRLGE-EDPKELPL-P--G-GLSLLDYHASKGRL--QGREGGRVAWVADPKDPRKPIPHLTGL 260 (685)
T ss_dssp SEEEESSS---CCEECCCEEEC-CCTTCC----------CSTTTTTTTSTT--TTSCCCSEEEECSCC---CCEEEETTS
T ss_pred HHHHHHCC---CCEEEEEECCC-CCCHHEEC-C--C-CCCHHHHHHHCCCC--CCCCCCEEEEEECCCCCCCCCEEEEEE
T ss_conf 77764316---62489863366-89332345-7--8-86599997542653--346786599995544578733244256
Q ss_pred CCCCCEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCEEEEEEECCCCCE
Q ss_conf 13454585157433345999999999998229926789999999983259998211213738726531876377189943
Q 001469 514 LPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPHERERDIMQTVHHNAYHEDPYAREFGIKISEKLASVEARILPAPWL 593 (1073)
Q Consensus 514 lP~Elc~i~~gQ~~~~kl~~~q~~~mik~a~~~P~~R~~~I~~~~~~~~~~~~~~l~~fGi~i~~~~~~v~grvL~~P~i 593 (1073)
|.|||| .++ |++.+.. .++...|.+|++.+.++++. +++.|||+ +++|++|+|||||||+|
T Consensus 261 l~p~l~--m~~------l~~~~~~---~~trlsP~~R~~~l~~~~~~-------i~~~~Gl~-~~~~i~v~gRvLppp~I 321 (685)
T 3ho1_A 261 LVPVLT--LED------LHEEEGS---LALSLPWEERRRRTREIASW-------IGRRLGLG-TPEAVRAQAYRLSIPKL 321 (685)
T ss_dssp EEEECC--TTT------TSSCSSC---CCCCCCHHHHHHHHHHHHHH-------HHHTTCSC-CCEEEEEEEEECCCCCE
T ss_pred ECHHHH--HHH------HHHHHHH---CCCCCCHHHHHHHHHHHHHH-------HHHHCCCC-CCCCCEEEEEECCHHHH
T ss_conf 322767--877------7666640---62567989999999999999-------88853999-89711687788388995
Q ss_pred EECCCCCCCCCCCCCCCEECCCCEEEECCEECEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHH
Q ss_conf 30589984335996651001273353072204269999468855689999999999998842954589992068999905
Q 001469 594 KYHDTGKEKDCLPQVGQWNMMNKKMVNGGTVNHWICINFSRHVQDSIARGFCFELAQMCYISGMAFNPEPVIPPISARPE 673 (1073)
Q Consensus 594 ~y~~~~~~~~~~p~~G~Wn~~~~kf~~~~~i~~W~~v~~~~~~~~~~~~~f~~~L~~~~~~~Gi~i~~~p~~~~~~~~~~ 673 (1073)
+++. . + ...|++.+.+|+.++.+ .|+++++... ...+.+|+++|.+.|+.+||.++. |... ..++
T Consensus 322 -~g~~-~---~---~~~~d~~~~~~~~~~~~-~~ail~l~~~--~~~~~~f~~~L~~va~~~G~~i~~-~~~~---~~~~ 386 (685)
T 3ho1_A 322 -MGRR-A---V---SKPADALRVGFYRAQET-ALALLRLDGA--QGWPEFLRRALLRAFGASGASLRL-HTLH---AHPS 386 (685)
T ss_dssp -ESSS-B---C---SSGGGHHHHCCSSCCCE-EEEEEECSSC--CSCCHHHHHHHHHHHHSSSSCEEE-EECC---CCGG
T ss_pred -CCCC-C---C---CCCHHHCCCCCEECCCC-EEEEEECCCC--HHHHHHHHHHHHHHHHHCCCEECC-CEEE---CCCC
T ss_conf -5899-7---5---78621114753113673-5999962672--678999999999988767937635-5110---4777
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 59999999999998650699985099999508998404445576211357111445202102342668999999998523
Q 001469 674 HVEKVLKTRYHDAMTKLGQGKELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYMANVALKINVKV 753 (1073)
Q Consensus 674 ~~~~~l~~~~~~~~~~~~~~~~~~lvl~ilp~~~~~~Y~~IK~~~d~~~GI~TQci~~~~~~k~~~q~~~Ni~lKiN~Kl 753 (1073)
+.. .+...+++..+ .++||||||+|+++.+.|..||++| .+.||+||||. +++.+...+++.||+||||+||
T Consensus 387 d~~-~~~~~l~~~~~-----~~~qlvvvIlp~~~~~~y~~IKk~~-~~~GIpTQcV~-~tl~k~~~~ia~NIaLkINaKL 458 (685)
T 3ho1_A 387 QGL-AFREALRKAKE-----EGVQAVLVLTPPMAWEDRNRLKALL-LREGLPSQILN-VPLREEERHRWENALLGLLAKA 458 (685)
T ss_dssp GTH-HHHHHHHHHHH-----TTCCEEEEEESCCCHHHHHHHHHHH-HHTTCCEEEEE-SSCCTTCHHHHHHHHHHHHHHH
T ss_pred CHH-HHHHHHHHHHH-----CCCCEEEEEECCCCCCHHHHHHHHH-HCCCCCCEEEE-CCCCCCCHHHHHHHHHHHHHHH
T ss_conf 369-99999998642-----3998899997799954789999998-63997638996-1225640719999999998873
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEEEEECC-CCCCCEEEEEEECCCCHHHHHHHHHCC
Q ss_conf 9623323211014777658999199999722899999999827799963078-875533679997168726655211003
Q 001469 754 GGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDW-PEVTKYAGLVCAQAHRQELIQDLFKTW 832 (1073)
Q Consensus 754 GG~N~~l~~~~~~~~p~~~~~~tmiiG~DVsHp~~g~~~~pSiaavVaS~d~-~~~~ky~~~~~~Q~~~~E~I~dl~~~~ 832 (1073)
||+||.|+. |. .+|||||+||+|++. .++++++++++- ....+| ..+..|.+.++.++++
T Consensus 459 GG~pW~L~~------P~---~~tmiIGiDVsH~~~-----~~~~~~aav~~~dg~~~~~-~~~~~Q~~e~l~~~~L---- 519 (685)
T 3ho1_A 459 GLQVVALSG------AY---PAELAVGFDAGGRES-----FRFGGAACAVGGDGGHLLW-TLPEAQAGERIPQEVV---- 519 (685)
T ss_dssp TCCCCEECS------CC---SCSEEEEEEEEETTE-----EEEEEEEEEECC--CCCEE-ECCCCCCSCCCHHHHH----
T ss_pred CCEEEEECC------CC---CCEEEEEEEEECCCC-----CCCCEEEEEEECCCCEEEE-EEEECCCCCEECHHHH----
T ss_conf 983578568------99---986999999973898-----9612399999788887776-7887267858649999----
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCC-CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCC
Q ss_conf 68976654057999999999998099994499982578-81579999999999999999950999999899999931222
Q 001469 833 QDPVRGAVSGGMIKELLISFRRATGQKPQRIIFYRDGV-SEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHH 911 (1073)
Q Consensus 833 ~~p~~~~~~~~mi~e~L~~f~~~~~~~P~~IIiyRDGV-SEGQf~~Vl~~El~~Ik~a~~~~~~~y~P~it~Ivv~KRHh 911 (1073)
.+|+.++|+.|++.++.+|+||||||||| +|+||. +|++||.++ .+++|||||+||||
T Consensus 520 ---------~~~l~eaL~~Y~k~ng~lP~RIIIyRDGV~se~E~~--------~I~eAl~~~----~~~~t~IvVqKRh~ 578 (685)
T 3ho1_A 520 ---------WDLLEETLWAFRRKAGRLPSRVLLLRNGRVPQDEFA--------LALEALARE----GIAYDLVSVRKSGG 578 (685)
T ss_dssp ---------HHHHHHHHHHHHHHHSSCCSEEEEEECSSSCSGGGH--------HHHHHHHHT----TCEEEEEEEESSCC
T ss_pred ---------HHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHH--------HHHHHHHHC----CCCEEEEEEEECCC
T ss_conf ---------999999999999983899848999958989989999--------999999861----99879999991687
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCEEECCC--CCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 3222247999887778888867304205666788452450345--77434335863799943998898889999998430
Q 001469 912 TRLFANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSH--AGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCY 989 (1073)
Q Consensus 912 tRff~~~~~~~~~~~~~~N~~pGTVVD~~It~p~~~DFyL~Sh--~~~qGTarPthY~VL~De~~~~~d~Lq~lT~~LCy 989 (1073)
||||+.+ .++.+||+|+ .++||||++| .++|||+||+||+ +|++++++|+||+|||+|||
T Consensus 579 tRfF~~n----------~pp~~Gt~v~------~e~d~flL~s~gsv~qGT~rPthy~--~D~~~~s~D~LQ~ltY~Lch 640 (685)
T 3ho1_A 579 GRVYPVQ----------GRLADGLYVP------LEDKTFLLLTVHRDFRGTPRPLKLV--HEAGDTPLEALAHQIFHLTR 640 (685)
T ss_dssp CCEEESS----------SCCCSSEEEE------CSTTEEEEECCCCCSSSCCCCEEEE--EEEECSCHHHHHHHHHHGGG
T ss_pred CEEECCC----------CCCCCEEEEE------CCCCEEEEEECCCCCCCCCCEEEEE--ECCCCCCHHHHHHHHHHHHH
T ss_conf 1374689----------8998759980------7897899996688876678619999--89899899999999999777
Q ss_pred CCCCCC-CCCCCCCHHHHHHHHH-HHHHH
Q ss_conf 554235-7644562668799999-99753
Q 001469 990 TYARCT-RSVSIVPPAYYAHLAA-FRARF 1016 (1073)
Q Consensus 990 ~y~r~t-~sVSip~P~yYA~l~a-~Rar~ 1016 (1073)
+|+||| ++||+|+||||||++| .|||.
T Consensus 641 my~nst~~svsvPAP~~YAhklAk~~~r~ 669 (685)
T 3ho1_A 641 LYPASGFAFPRLPAPLHLADRLVKEVGRL 669 (685)
T ss_dssp CCSSCSSSCCSSCHHHHHHHHHHHHHHHT
T ss_pred HHCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 51168999998675789999999999873
No 8
>2w42_A PIWI, putative uncharacterized protein; RNAI, RISC, argonaute, PIWI domain, protein/DNA complex; 1.90A {Archaeoglobus fulgidus} PDB: 1ytu_A 2bgg_A 1w9h_A
Probab=1.00 E-value=1 Score=473.85 Aligned_cols=365 Identities=14% Similarity=0.055 Sum_probs=260.3
Q ss_pred ECCCCCEEECCCCCCC-----CCCCCCCCEECCCCEEEECCEE--CEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 7189943305899843-----3599665100127335307220--42699994688556899999999999988429545
Q 001469 587 ILPAPWLKYHDTGKEK-----DCLPQVGQWNMMNKKMVNGGTV--NHWICINFSRHVQDSIARGFCFELAQMCYISGMAF 659 (1073)
Q Consensus 587 vL~~P~i~y~~~~~~~-----~~~p~~G~Wn~~~~kf~~~~~i--~~W~~v~~~~~~~~~~~~~f~~~L~~~~~~~Gi~i 659 (1073)
-|..|.+.|+.++... ...|..| ++....+....+ .+|++|+-.+.. +.++.|.+.+.... ..++.+
T Consensus 5 ~~~ep~~~~~~~~~~~~~~~~~~~~~~g---l~~~gpy~~~~~~~~~w~vI~~~~~~--~~l~~l~~~~~~~~-g~~f~~ 78 (427)
T 2w42_A 5 KIVENGLTYRIGNGASVPISNTGELIKG---LRNYGPYEVPSLKYNQIALIHNNQFS--SLINQLKSQISSKI-DEVWHI 78 (427)
T ss_dssp ------CEEECGGGCEEESSCHHHHHHH---HHHHCCSBCCCCSSSEEEEEESCTTC--HHHHHHHHHHHHHH-HHTTCC
T ss_pred CCCCCCCEEECCCCCCCCCCCCCCHHHH---HHHCCCCCCCCCCCCEEEEEECCCCH--HHHHHHHHHHHHCC-CCCEEE
T ss_conf 4478753441247973444456787899---98669974677889889999773308--99999987533128-984053
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEE--------ECCCCCCHHHHHHHHHCCCCCEEEEEEE
Q ss_conf 89992068999905599999999999986506999850999995--------0899840444557621135711144520
Q 001469 660 NPEPVIPPISARPEHVEKVLKTRYHDAMTKLGQGKELDLLIVIL--------PDNNGSLYGDLKRICETDLGLVSQCCLT 731 (1073)
Q Consensus 660 ~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~lvl~il--------p~~~~~~Y~~IK~~~d~~~GI~TQci~~ 731 (1073)
.. +. .+.+.+.+.+++... .+++++|||+ |+++...| .+|+ ++++.||+||||+.
T Consensus 79 ~~-~~-----~~~~~y~~~i~~~l~---------~~~~lvlvilp~~~~~~~~~~~~~~y-~~K~-~~~~~gvptQ~I~~ 141 (427)
T 2w42_A 79 HN-IN-----ISEFIYDSPHFDSIK---------SQVDNAIDTGVDGIMLVLPEYNTPLY-YKLK-SYLINSIPSQFMRY 141 (427)
T ss_dssp CS-CE-----EEEEECSSSSHHHHH---------HHHHHHHHHCCSEEEEEESSCCHHHH-HHHH-HHHHTTSCEEEEEG
T ss_pred CC-CC-----CCHHHHHHHHHHHHC---------CCCCEEEEEEECCCCCCCCCCCCCHH-HHHH-HHHCCCCCCEEEEH
T ss_conf 57-76-----780789999999743---------79979999997601045898775059-9999-98679967589873
Q ss_pred CCCCCCCHHH-HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEEEEECCCCCCC
Q ss_conf 2102342668-999999998523962332321101477765899919999972289999999982779996307887553
Q 001469 732 KHVFKMSKQY-MANVALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTK 810 (1073)
Q Consensus 732 ~~~~k~~~q~-~~Ni~lKiN~KlGG~N~~l~~~~~~~~p~~~~~~tmiiG~DVsHp~~g~~~~pSiaavVaS~d~~~~~k 810 (1073)
+|+.+.+.++ +.||++|||+||||+||.|+.. .|+ .+|||||+||+|++.+ +++|++...| .+...
T Consensus 142 ~tl~~~~~~~~~~nIalqi~~KlGG~pW~l~~~----~~~---~~~miiGidv~h~~~~-----~v~g~a~v~~-~~g~~ 208 (427)
T 2w42_A 142 DILSNRNLTFYVDNLLVQFVSKLGGKPWILNVD----PEK---GSDIIIGTGATRIDNV-----NLFCFAMVFK-KDGTM 208 (427)
T ss_dssp GGCCTTTHHHHHHHHHHHHHHHTTCBCCEECCC----TTS---SCSEEEEEEEEESSSS-----EEEEEEEEEC-TTSCE
T ss_pred HHCCCCCCHHHHHHHHHHHHHHHCCCCEECCCC----CCC---CCEEEEEEEEEECCCC-----CEEEEEEEEC-CCCCE
T ss_conf 354556505699999999978738966064567----898---9869997899876999-----5799999983-89978
Q ss_pred EEEEEEECCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH-HCCCCCC--EEEEEECCCCHHHHHHHHHHHHHHHH
Q ss_conf 36799971687266552110036897665405799999999999-8099994--49998257881579999999999999
Q 001469 811 YAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISFRR-ATGQKPQ--RIIFYRDGVSEGQFYQVLLYELDAIR 887 (1073)
Q Consensus 811 y~~~~~~Q~~~~E~I~dl~~~~~~p~~~~~~~~mi~e~L~~f~~-~~~~~P~--~IIiyRDGVSEGQf~~Vl~~El~~Ik 887 (1073)
+...+..|.+++|++++| ..+++++|+.|++ .++.+|+ ||||| |||.+|+++|+++|+
T Consensus 209 ~~~~~~~~~~~~E~~~~l-------------~~~l~~aL~~y~~~~~~~~P~~~rIii~------gq~~~v~~~Ei~~i~ 269 (427)
T 2w42_A 209 LWNEISPIVTSSEYLTYL-------------KSTIKKVVYGFKKSNPDWDVEKLTLHVS------GKRPKMKDGETKILK 269 (427)
T ss_dssp EEEEECCCEEGGGHHHHH-------------HHHHHHHHHHHHHHCTTCCCSEEEEEEE------SSCCSCHHHHHHHHH
T ss_pred EEEEEEECCCHHHHHHHH-------------HHHHHHHHHHHHHHHCCCCCCCEEEEEE------EECCCCCHHHHHHHH
T ss_conf 999888427706799999-------------9999999999998742789982599999------214111699999999
Q ss_pred HHHHHHCC----CCCCCEEEEEEEECCC-CCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCEEECCCCCCCC---
Q ss_conf 99995099----9999899999931222-322224799988777888886730420566678845245034577434---
Q 001469 888 KACASLEP----NYQPPVTFVVVQKRHH-TRLFANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQG--- 959 (1073)
Q Consensus 888 ~a~~~~~~----~y~P~it~Ivv~KRHh-tRff~~~~~~~~~~~~~~N~~pGTVVD~~It~p~~~DFyL~Sh~~~qG--- 959 (1073)
+||.++.. +|+|+||||+|+|||| +|||..+ ..+||+||||||.+ ++|||++|.+.|+
T Consensus 270 ~a~~~~~~~~~~~~~~~l~~IvV~Kr~~~~r~f~~~--------~~~nP~~GTvVd~~------~~~~l~~~~g~q~~~~ 335 (427)
T 2w42_A 270 ETVEELKKQEMVSRDVKYAILHLNETHPFWVMGDPN--------NRFHPYEGTKVKLS------SKRYLLTLLQPYLKRN 335 (427)
T ss_dssp HHHHHHHHTTSSCTTCEEEEEEEEECCCEEEEC----------------CCSEEEESS------SSEEEEEEEC------
T ss_pred HHHHHHCCCCCCCCCCCEEEEEEECCCCCEEEECCC--------CCCCCCCCEEEECC------CCEEEEEEEEEECCCC
T ss_conf 999871544345788877999998166654665478--------88998996499758------9808999974523656
Q ss_pred ---C---CCCCEEEEEEC----CCCC-CHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf ---3---35863799943----9988-988899999984305542357644562668799999997530276
Q 001469 960 ---T---SRPAHYHVLWD----ENKF-TADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEP 1020 (1073)
Q Consensus 960 ---T---arPthY~VL~D----e~~~-~~d~Lq~lT~~LCy~y~r~t~sVSip~P~yYA~l~a~Rar~~~~~ 1020 (1073)
+ ++||||+|++| |+.+ ++|+||++||+|||+|+|||++||+|+||||||++|+++.....-
T Consensus 336 ~~~~~~~~~Pt~y~vi~d~~~~~~~~~~~d~lq~lty~L~~~nw~~t~~v~vPap~~YAhklA~l~~~~~~~ 407 (427)
T 2w42_A 336 GLEMVTPIKPLSVEIVSDNWTSEEYYHNVHEILDEIYYLSKMNWRGFRSRNLPVTVNYPKLVAGIIANVNRY 407 (427)
T ss_dssp ---CEEEEEEEEEEEEEECCCTTTHHHHHHHHHHHHHHHHTCCTTSSSCCSSCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 656535889879999966876844598999999999985476568888898376507699999998656425
No 9
>4g0x_A Protein argonaute 1; MID domain, small RNA 5' nucleotide recognition, gene regula; 1.35A {Arabidopsis thaliana} PDB: 4g0q_A* 4g0p_A 4g0y_A* 4g0z_A* 3vna_A 3vnb_A
Probab=1.00 E-value=1 Score=227.58 Aligned_cols=146 Identities=88% Similarity=1.424 Sum_probs=130.0
Q ss_pred CCEEEECCEECEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 73353072204269999468855689999999999998842954589992068999905599999999999986506999
Q 001469 615 NKKMVNGGTVNHWICINFSRHVQDSIARGFCFELAQMCYISGMAFNPEPVIPPISARPEHVEKVLKTRYHDAMTKLGQGK 694 (1073)
Q Consensus 615 ~~kf~~~~~i~~W~~v~~~~~~~~~~~~~f~~~L~~~~~~~Gi~i~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 694 (1073)
+++|++|+++++|++++|++..+++.++.|++.|.+.|+.+||.+..+|.+.....+++++++.|+.+++++.+++....
T Consensus 2 ~kkf~~~~~l~~Wavv~~~~~~~~~~~~~F~~~L~~~~~~~Gm~i~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 81 (147)
T 4g0x_A 2 NKKMINGGTVNNWICINFSRQVQDNLARTFCQELAQMCYVSGMAFNPEPVLPPVSARPEQVEKVLKTRYHDATSKLSQGK 81 (147)
T ss_dssp CCCEEECCEECSEEEEECCTTCCHHHHHHHHHHHHHHHHHTTCEECSSCSSCCEECCGGGHHHHHHHHHHHHHHTSSTTC
T ss_pred CCEEECCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 88770277467489998468776799999999999999984997799986521478817799999999999986404489
Q ss_pred CCEEEEEEEECCCCCCHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 850999995089984044455762113571114452021023426689999999985239623323
Q 001469 695 ELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYMANVALKINVKVGGRNTVL 760 (1073)
Q Consensus 695 ~~~lvl~ilp~~~~~~Y~~IK~~~d~~~GI~TQci~~~~~~k~~~q~~~Ni~lKiN~KlGG~N~~l 760 (1073)
+++|||||||+++.++|+.||++||+++||+||||+.+++.|.++||++||+||||+||||+||.|
T Consensus 82 ~~~lv~~il~~~~~~~Y~~iK~~~~~~~gi~tqcv~~~~~~k~~~q~~~nv~lKiN~KlGG~N~~l 147 (147)
T 4g0x_A 82 EIDLLIVILPDNNGSLYGDLKRICETELGIVSQCCLTKHVFKMSKQYMANVALKINVKVGGRNTVL 147 (147)
T ss_dssp CCCEEEEEECSSCTTHHHHHHHHCCCCCCCCEEEEEHHHHHHCCHHHHHHHHHHHHHHTTCEECCC
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEECHHHHCCCCHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 971999996899940789999987327891658854455167778899999999977657545639
No 10
>1vyn_A Argonaute2; nucleic acid binding, RNA interference; NMR {Drosophila melanogaster} SCOP: b.34.14.1
Probab=1.00 E-value=1 Score=222.21 Aligned_cols=138 Identities=25% Similarity=0.500 Sum_probs=121.0
Q ss_pred ECCCCHHHHHHHHHCC-CCCCCCCCHHHHHHHHHHHCCCEEEEEECC---CCCCEEEEECCCCCCCCCEEEEECCCCCEE
Q ss_conf 4476199999998427-999999996789999998159599993259---866339994457899875055415899374
Q 001469 406 IEPLPVIDFVQQLLNR-DVSSRPLSDADRVKIKKALRGVRVEVTHRG---NMRRKYRISGLTSQTTGELTFPVDESGTLK 481 (1073)
Q Consensus 406 ~~~~~l~d~i~~~~~~-~~~~~~~~~~~~~~i~~~Lkgl~V~~~~~~---~~~r~~~I~~i~~~~a~~~~F~~~~~g~~i 481 (1073)
++++||+||++++++. ........+.++.+++++|+|++|.++|.+ ..+|+|+|.+|++.++++.+|+++ |.++
T Consensus 2 ~~~~~vidfl~~~~~~~~~~~~~~~~~~r~~~~k~LkGl~V~~~~~~~~~~~~r~yrI~~i~~~~a~~~~F~~~--g~~i 79 (143)
T 1vyn_A 2 AMAMPMIEYLERFSLKAKINNTTNLDYSRRFLEPFLRGINVVYTPPQSFQSAPRVYRVNGLSRAPASSETFEHD--GKKV 79 (143)
T ss_dssp --CEEHHHHHHHHTTSSCCSSSSCHHHHHHHSHHHHTTEEEEECCCTTSCCCCEEEEEEEEEEEETTTCEEESS--SCEE
T ss_pred CCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEEEECCCCCCCCEEEECC--CCEE
T ss_conf 88634999999986216666557566899999997498399995687766787359981056899521289749--9779
Q ss_pred EHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 29999998819866789983799245886621134545851574333459999999999982299
Q 001469 482 SVVEYFYETYGFVIQHTQWPCLQVGNQQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQR 546 (1073)
Q Consensus 482 sV~~Yf~~~Y~i~L~~p~lP~v~~g~~~~~~ylP~Elc~i~~gQ~~~~kl~~~q~~~mik~a~~~ 546 (1073)
||+|||+++ |++|+||+||||++|++.+++|||||||.|++||+|+++|+++|+++||++||++
T Consensus 80 sv~~Yf~~~-~~~l~~p~lP~l~~g~~~k~~ylP~ElC~i~~gQ~~~~kl~~~q~~~mik~a~~~ 143 (143)
T 1vyn_A 80 TIASYFHSR-NYPLKFPQLHCLNVGSSIKSILLPIELCSIEEGQALNRKDGATQVANMIKYAATS 143 (143)
T ss_dssp EHHHHHHHT-TCCCSSTTSEEEEEECSSSEEEEEGGGEEECC-----------------------
T ss_pred EHHHHHHHC-CCCCCCCCCCEEEECCCCCCEEECCEEEECCCCCCCCCCCCHHHHHHHHHHHHCC
T ss_conf 899999872-9977899987587437889758511858805895224318989999999998359
Done!