Query 001473
Match_columns 1072
No_of_seqs 197 out of 303
Neff 3.9
Searched_HMMs 46136
Date Fri Mar 29 01:42:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001473.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001473hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0916 1,3-beta-glucan syntha 100.0 0E+00 0E+00 3122.9 68.5 1000 1-1064 666-1679(1679)
2 PF02364 Glucan_synthase: 1,3- 100.0 2E-274 3E-279 2369.1 46.1 691 175-895 1-777 (817)
3 PF02364 Glucan_synthase: 1,3- 98.1 8.6E-07 1.9E-11 108.1 1.1 43 269-311 100-142 (817)
4 PRK11204 N-glycosyltransferase 90.0 1.2 2.6E-05 50.9 8.9 182 363-573 71-257 (420)
5 TIGR03111 glyc2_xrt_Gpos1 puta 89.0 11 0.00023 44.4 15.8 42 425-470 118-160 (439)
6 PRK14583 hmsR N-glycosyltransf 88.2 0.54 1.2E-05 54.9 4.6 135 424-571 141-276 (444)
7 PRK11498 bcsA cellulose syntha 84.2 0.75 1.6E-05 58.6 3.3 189 424-631 325-522 (852)
8 cd02520 Glucosylceramide_synth 63.7 15 0.00032 37.5 5.8 101 425-573 73-174 (196)
9 cd06421 CESA_CelA_like CESA_Ce 62.1 9.7 0.00021 39.0 4.2 138 424-573 70-208 (234)
10 PF12823 DUF3817: Domain of un 53.2 53 0.0012 31.6 7.2 67 901-971 14-81 (92)
11 PRK05454 glucosyltransferase M 45.8 3.4E+02 0.0073 34.8 14.4 140 424-572 204-352 (691)
12 COG1215 Glycosyltransferases, 36.2 15 0.00033 41.7 0.9 126 421-571 120-260 (439)
13 PHA03048 IMV membrane protein; 34.2 82 0.0018 30.7 5.1 30 611-640 1-30 (93)
14 PHA02680 ORF090 IMV phosphoryl 34.1 1.4E+02 0.003 29.2 6.5 31 611-641 1-31 (91)
15 PF05794 Tcp11: T-complex prot 34.1 2E+02 0.0044 33.9 9.6 91 23-123 50-156 (441)
16 TIGR03472 HpnI hopanoid biosyn 33.1 1.1E+02 0.0024 35.3 7.0 130 425-570 113-247 (373)
17 PRK11281 hypothetical protein; 30.0 3.2E+02 0.007 36.9 11.2 42 830-877 594-635 (1113)
18 TIGR03030 CelA cellulose synth 29.2 61 0.0013 41.0 4.5 158 425-599 215-381 (713)
19 PF11457 DUF3021: Protein of u 28.3 5.6E+02 0.012 25.3 10.2 32 1001-1034 67-99 (136)
20 KOG1373 Transport protein Sec6 27.5 2.4E+02 0.0052 34.0 8.3 98 663-776 140-252 (476)
21 COG0621 MiaB 2-methylthioadeni 27.0 47 0.001 40.0 2.9 76 434-529 163-241 (437)
22 PF14518 Haem_oxygenas_2: Iron 25.8 43 0.00093 31.5 1.8 75 422-517 9-89 (106)
23 PF10569 Thiol-ester_cl: Alpha 25.4 25 0.00054 27.8 0.1 11 592-602 9-19 (31)
24 PF07059 DUF1336: Protein of u 23.6 46 0.001 36.7 1.8 28 410-438 68-95 (227)
25 PF05073 Baculo_p24: Baculovir 23.1 4.2E+02 0.009 28.9 8.5 66 29-96 86-156 (182)
26 PRK10547 chemotaxis protein Ch 21.9 3.1E+02 0.0067 35.0 8.6 88 21-115 9-96 (670)
27 PRK14716 bacteriophage N4 adso 21.1 33 0.0007 41.9 0.1 26 547-572 260-285 (504)
28 KOG2887 Membrane protein invol 20.5 2E+02 0.0044 31.1 5.6 79 899-980 76-155 (175)
No 1
>KOG0916 consensus 1,3-beta-glucan synthase/callose synthase catalytic subunit [Cell wall/membrane/envelope biogenesis]
Probab=100.00 E-value=0 Score=3122.94 Aligned_cols=1000 Identities=57% Similarity=0.925 Sum_probs=956.7
Q ss_pred CcccccCCCcHHHHHHhhhCCcchhhHHHHHHHHHHHHHHhcCCC-chhhHHHHHHHHHHHHhhcCcccceeecCCchhH
Q 001473 1 MAKDFKQKEDTDLFRKIKNDGYMHSAVIECYETLREIIYGLLEDE-TDRNVVKQICYNVDISIQQHRFLNEFRMAGMPSL 79 (1072)
Q Consensus 1 ~a~~~~~~~d~~l~~~i~~d~y~~~av~e~y~s~~~il~~l~~~~-~~~~~v~~i~~~i~~~i~~~~~~~~f~~~~Lp~l 79 (1072)
|||++.++.+.+++++|++|+||.|||+|||+|+|+++..++.++ .++.|+++++++|+.+|.+.++..+||++.||.+
T Consensus 666 qaK~~~g~~~~~l~~~~~~DtYm~yaV~e~y~Sik~~~~~~i~~~T~~r~i~~ri~~rI~~~I~~~~~~~~fk~~vL~~~ 745 (1679)
T KOG0916|consen 666 QAKILLGKMYLTLLILFFLDTYLWYAVVETYFSIKKSFYLGISILTPWRNIFSRLPKRIYSKILATDLEIEFKPKVLPSQ 745 (1679)
T ss_pred HHHHhcCchHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHHHHhhHHHHhChhhhHHH
Confidence 689999977779999999999999999999999999999999998 7888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCchhhHHhHHHHHHHHHHHHHHHhhhcCchhhhhhhcccCCCchhhhhhhhccccccCchhHHH
Q 001473 80 CEKLEKFVKLLLSKYEDVDVYKSQIINFLQDIMKIILQDIMVNGFEILERFHTQIQNNDKEEQIFEKLNITIMENKSWRE 159 (1072)
Q Consensus 80 ~~~~~~l~~~l~~~~~~~~~~~~~vv~~l~~l~e~~~~d~~~~~~~~~~~~~~~~~~~~~~~~lf~~i~~p~~~~~~~~~ 159 (1072)
+.++++|+ + . ..+ ++++|+++|++++|++.++.+ +.. +. .+.|.+++ +..+
T Consensus 746 ~~~~i~i~---m--y------~e~-l~~lq~l~ell~~qv~~e~~~--~~~----~~----~~ff~~~~-----d~~~-- 796 (1679)
T KOG0916|consen 746 IWNAIKIS---M--Y------REH-LLALQHLQELLYHQVPSEGGG--QTL----KA----PTFFVSQD-----DGSF-- 796 (1679)
T ss_pred Hhhhhhee---h--h------HHH-HHHHHHHHHHHHHHhhhhccc--chh----hc----chhheecc-----cccc--
Confidence 99999988 1 1 111 999999999999999988765 111 11 24444444 2222
Q ss_pred HHHHHhhhhcccccccCCCCChhhhHhHhhhhcccCCCCCCCcccccccceeeeccccccccccChhhhccccCCCccHH
Q 001473 160 KVVRLHFLLTVKESAVNVPTNLDARRRITFFANSLFMKMPSAPKVRDMISFSVLTPYYREDVLYSVDELNNENEDGISTL 239 (1072)
Q Consensus 160 ~~~rl~~lLt~~~~a~~~P~~~EArRRi~FFanSL~m~mP~a~~V~~M~sfsVltPyY~E~Vl~S~~eL~~e~edgvsiL 239 (1072)
|+|+++|+|+||||||+||||||||+||+||||++|||||||||||+||||||++||++|||||||||
T Consensus 797 ------------~s~~~~P~n~EA~RRisFFa~SL~m~mP~a~~V~~M~sFsVLtP~YsE~vl~S~~el~~e~ed~vsiL 864 (1679)
T KOG0916|consen 797 ------------ESAEFVPSNLEARRRISFFANSLFMPMPEAPPVRNMPSFSVLTPYYSEKVLYSLRELIRENEDGVSIL 864 (1679)
T ss_pred ------------cchhhCCccHHHHHHHHHHHHhhccCCCCCCcccccCceeeecccchhhhhhhHHHHhhcccCCeeHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCchhhhhHHhhhCC--C---CCCCCCchhhhhhhhcccccccccccccccccchHHHHHHhhhhhcCCcccccc
Q 001473 240 FYLQKIYPDEWKNLQKRIND--P---KFNYSDADKEEATCHWASYRGQTLSRTVRGMMYYKQALELQCFLESAGDNAIFG 314 (1072)
Q Consensus 240 ~YL~~i~PdEW~NF~er~k~--e---~~~~~~~~~~~elR~WAS~RgQTL~RTVrGmM~Y~~ALkll~~lE~~~~~~~~~ 314 (1072)
+||||||||||+||+||+|. + .|++..|++++|||+|||||||||||||||||||+|||||||++|+|++.++.+
T Consensus 865 ~YLqki~pdEW~nFler~k~~~~e~~~dl~~~pe~~l~lR~WaS~RgQTL~RTvrGmMyY~rAlkL~~~~e~~~~~~~~~ 944 (1679)
T KOG0916|consen 865 FYLQKIYPDEWKNFLERTKCLAEEKIDDLPFYPEYTLRLRIWASYRGQTLYRTVRGMMYYSRALKLLYFLENPEEVDLFE 944 (1679)
T ss_pred HHHHHhCcHHHHHHHHHhccchhccccccccchhHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhhcchhhHHhc
Confidence 99999999999999999983 2 245555789999999999999999999999999999999999999999999999
Q ss_pred CcccccCCcH-HHHHHHHHHhcccceEEeehhhhccCCCCcccccccchHHHHHHHHhCCCcEEEEecccccccCCCccc
Q 001473 315 GYRIMESSQE-DERASAQALVNMKFTYVASCQIYGAQKKSDDWRDRSCYKNILHLMIKYPSLRVAYLDEREEIVNGKSQK 393 (1072)
Q Consensus 315 g~~~~~~~~~-~~~~~~~~~a~~KF~yVVscQ~Yg~~k~~~~~r~~a~~~di~~Lm~~~P~LrVAYide~~~~~~g~~~~ 393 (1072)
|.+. ++ .+++++++||++|||||||||+||.||.++| ++| +||++||++||+||||||||++++.+++ ++
T Consensus 945 G~~~----~~~~l~~~l~~~A~~KFtyvVscQ~Y~~~K~~~d--~~a--e~i~~Lm~~yp~LriAYide~e~~~~~~-~~ 1015 (1679)
T KOG0916|consen 945 GDSN----EDRSLEAELEAMADRKFTYVVSCQRYGNQKFSGD--ERA--ENILFLMRAYPSLRIAYIDEVEPPVEEG-EP 1015 (1679)
T ss_pred CCch----hhhHHHHHHHHHHhccceEEEehhHhhhhccCCC--hHH--HHHHHHHHhCccceEeeeccccccccCC-Cc
Confidence 9432 23 3789999999999999999999999999999 999 9999999999999999999988766554 77
Q ss_pred eEEEEEEecCC-----CccceeEEeecCCCCcccCCCCCcCccchhhhhcccccccccCCccccHHHHhhhhhhHHHHhh
Q 001473 394 FHYSVLLKGGD-----KYDEEIYRIKLPGPPTVIGEGRPENQNHAIIFTRGEALQTIDMNQDNYFEEAFKMRNVLEEFLK 468 (1072)
Q Consensus 394 ~yySvLvk~~~-----~~~~eiYRIkLPG~~pilGEGKpeNQNhAiIFtRGE~lQtIDmNQDnYlEEaLKmRNlL~Ef~~ 468 (1072)
+|||+||||+. |+|+||||||||| |||||||||||||||||||||||||||||||||||||||||||||+||++
T Consensus 1016 ~~YS~Lvk~~~~~~~~~~~~~iyrIkLpG-~pilGeGKpeNQNhaiiFtRGE~iQtIDmNQDnYlEE~lKmRnlL~EF~~ 1094 (1679)
T KOG0916|consen 1016 VYYSVLVKGDCEIDENGLDQEIYRIKLPG-PPILGEGKPENQNHAIIFTRGEAIQTIDMNQDNYLEEALKMRNLLQEFEE 1094 (1679)
T ss_pred eEEEEeeecCcchhhcccccceEEEeCCC-CCcCCCCCCcccCceeeeecchhhheecccchHHHHHHHHHHHHHHHHHh
Confidence 99999999994 5899999999999 99999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCceEecccceeecccchhhhcccccchhhhHHHHHHhhcccceeeeeccCCccccccccccCCccccccccccc
Q 001473 469 STSGQREPTILGLREHIFTGSVSSLAWFISNQETSFVTISQRILVNPLRVRFYYGHPDIFDRIFHITRGGIGKASRVINY 548 (1072)
Q Consensus 469 ~~~g~~~~~IlG~REhIFTgsvssLa~f~a~qE~sFvTl~qR~LA~Pl~vR~HYGHPDvfd~~F~~TRGGvSKAsk~inL 548 (1072)
.+.|.|||||||+|||||||||||||||||||||||||||||+||+|+||||||||||||||+||+||||||||||||||
T Consensus 1095 ~~~g~r~ptIlG~RE~IFt~svssLa~fms~qEqSFvTlgqR~LA~p~~vr~HYGHPD~~drif~~TRGGvSKAsk~inl 1174 (1679)
T KOG0916|consen 1095 LHLGIRPPTILGAREHIFTGSVSSLAWFMSGQEQSFVTLGQRTLANPGGVRLHYGHPDVFDRIFHITRGGVSKASKGINL 1174 (1679)
T ss_pred hcCCCCCCceeeehhheecCCchHHHHHHccCccchhhHHHHHhccccceeeecCCCcHhhhhhhhccccchHhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhcccccccccceeeeEeeeeeccccccCccccccchhhccCccccccchhhhhhcccccchhhhhhhhccccchhh
Q 001473 549 GADIYAGMNSTLRGGYITHHEYIQVGKGRDMGMNQLSLSEARVAGVNGEQTFSRDVYRLGHCFDFFRMLSFYFTTVGFYL 628 (1072)
Q Consensus 549 sEDIfaG~N~~lRGG~I~h~EYiQ~GKGRDvG~~qI~~FeaKIa~GnGEQ~LSRd~yrLG~~ldffR~LSfYyt~~GFy~ 628 (1072)
||||||||||||||||||||||||||||||||||||++||||||+|||||+||||+|||||||||||||||||||||||+
T Consensus 1175 sEDIfAG~n~tlRgG~itH~EYiQvGKGRDvGlnqI~~FeaKia~G~GEQ~LSRd~YrLG~~ldffRmLSfyftt~GF~~ 1254 (1679)
T KOG0916|consen 1175 SEDIFAGFNATLRGGNITHHEYIQVGKGRDVGLNQISNFEAKIANGNGEQTLSRDYYRLGTQLDFFRMLSFYFTTVGFYF 1254 (1679)
T ss_pred chHhhhhhhHHhhCCCcccceeeecccccccCcchhhhhhhhhcCCCcchhhhHHHHHhcccccHHHHHHHHhccccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccchhhhcCCCCCCCchHHHHhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 001473 629 SSMVIVLTVYVFLYGRLYLVMSGLEREILENPGMHQSMALEEALATQSVFQLGLLLVLPMVMEIGLEKGFCSALCDFIIM 708 (1072)
Q Consensus 629 n~~~~vltvy~fly~~lylalsg~e~~~~~~~~~~~~~~l~~~l~~q~i~qlg~l~~lPm~~~~~lE~G~~~A~~~~~~~ 708 (1072)
|||+||+|||+||||++|+++||+|+.+...+...++.+|++||+|||+||+|+++++||+|++++||||++|+.||++|
T Consensus 1255 n~m~ivltVy~Fl~GrlYl~lsg~~~~~~~~~~~~~~~~l~~aL~~qsifqv~~~~~lPmv~e~~lErGf~~A~~~f~~m 1334 (1679)
T KOG0916|consen 1255 NNMFIVLTVYLFLYGRLYLVLSGYEKDISLTASPRGCYALEPALAWQSIFQVGFIMFLPMVMEIGLERGFLRALSRFIKM 1334 (1679)
T ss_pred HhHHHHHHHHHHHHHhHHHHHhhhhhccccccCCCccchHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988767778889999999999999999999999999999999999999999999
Q ss_pred HhhhcceeEEEEeceEEeEeecccccccceeeecCCceEEeeechhhhhhhhhhhhHHHHHHHHHHHHHHHHhhccccCC
Q 001473 709 QLQLASVFFAFQLGTKVHYFGKTILHGSCKYRATGRGFVVYHAKFSENYRQYSRSHFVKGLELVILLVLYEVYWHSYRSS 788 (1072)
Q Consensus 709 ~l~l~~~F~~F~~gt~~h~~~~~il~GGAkY~aTGRGFvv~h~~F~~~Y~~Ya~Shf~~g~el~~lLivy~~~g~~~~~~ 788 (1072)
|+||||+||||+||||+|||+|||+|||||||||||||||.|+||++|||+|||||||||+|+++||+||.+||+.++++
T Consensus 1335 qlqLa~vF~tF~~gt~~hy~~rtllhGGAkYr~TGRGFvv~h~~FsenYrlysrshfvkg~el~lmLlvy~~fg~~~~~~ 1414 (1679)
T KOG0916|consen 1335 QLQLAPVFFTFSLGTYTHYFGRTLLHGGAKYRATGRGFVVFHAKFSENYRLYSRSHFVKGSELMLLLLVYQIFGPAYRSS 1414 (1679)
T ss_pred HHhhhhHheeeeccchhHhhhhHhhcCCeeeeccCcceEEEeccHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhHHHHHHHHHHHHhhcccccCCCCccccchhhcHHHHhHhhccCCCCcccCCcchHhhhHHhhhhhhccccchhh
Q 001473 789 NKFYLFITLSMWFLVGSWLFAPFVFNPSGFDWQKTVDDWTDWKRWMGNRGGIGTLPYRSWESWWDEEQEHLKFSNIRGRI 868 (1072)
Q Consensus 789 ~~~y~~~t~s~W~~~~swl~aPf~FNP~gF~w~k~~~D~~dw~~Wl~~~g~~~~~~~~SW~sWw~~E~~~lr~tg~~gk~ 868 (1072)
. .|++.|+|+||+++|||||||+||||||+|+|+|+||+||+|||++|||+++++++||++||++|++|++++|.+|++
T Consensus 1415 ~-~y~~~~i~~Wf~v~swlfAPFlFNPsgF~W~~~v~D~~d~~rWl~~rG~~~~~~~~SW~~ww~~e~~hl~~~~~~G~~ 1493 (1679)
T KOG0916|consen 1415 T-VYILITISFWFLVGSWLFAPFLFNPSGFEWQKFVDDYRDWIRWLWSRGGIGVHAEKSWESWWEEEQEHLTGSGRRGRF 1493 (1679)
T ss_pred H-HHHHHHHHHHHHHHHHHhcccccCcccccHHHHHhhHHHHHHHHHhcCCCCCCccccHHHHHHHHHHHHhccCccchh
Confidence 9 999999999999999999999999999999999999999999998899999999999999999999999999999999
Q ss_pred hHHHHhhHHHhhheeeeeeeeecc-CCceEEEehhHHHHHHHHHHHHHHhhhccccccccchhhhH-HHHHHHHHHHHHH
Q 001473 869 LEIILVFRFFIYQYGIVYHLDIAH-RTKNTVVYGLSWLVLVTTLLVLKMVSMGGRRSGAEFQLMFR-IKALVFLGFMSVM 946 (1072)
Q Consensus 869 ~eiil~lRffi~qyGivy~L~i~~-~~ksi~Vy~lsw~viv~~~~il~~vs~~r~k~sa~~ql~~R-ik~llf~~~v~vi 946 (1072)
+||++++|||++|||+||+|+++. .++++.||++||+++++++++++++++++||+|+++|+++| +|++++++++.++
T Consensus 1494 ~Ei~l~l~f~~f~~~~~~~ln~~~g~~~~~~v~~~s~~~i~~v~~~~~~~~~~~kk~g~~~~~~~r~i~~~~~~~~~~v~ 1573 (1679)
T KOG0916|consen 1494 LEIILPLRFFFFQYGIVYFLNIQPGTNTSLRVYILSWAPIAAVLFLFKLLGMCRKKFGAVFALLARFIKVLVFLLFFEVM 1573 (1679)
T ss_pred HHHHHHHHHHHhhheeeEEEeccCCCCceEeehhhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998 59999999999999999999999999999999999999999 9999999999999
Q ss_pred HHHHHhcccchhhHHHHHHHHhhhhhhhhhcccccccccchhhhhhhhhhHhhcchhHHHHHHHHHHHHHHHHHHHHHHH
Q 001473 947 TVLFVVCGLTISDLFACMLAFLPTGISQIYNLGYFFNVFPFSIGQVCRPLFKAIGLWDSVKELARAYEYIMGLLLFAPIA 1026 (1072)
Q Consensus 947 i~l~~l~~lt~~Difa~~LafiptGwgl~~~~~y~~~~~~l~ia~a~rp~~~~~~~w~~V~~LAr~yD~~~G~iif~Pia 1026 (1072)
++|..++.++..|+|+|+|||+||||++ ++|||++||+.+..++|++|+.+||+||++||++||+|+|
T Consensus 1574 ~~l~~~~~~~~~d~~~~~la~~~t~~~~------------l~i~~~~r~~~~~~~~W~~~~~~~~ayd~~mg~li~~p~a 1641 (1679)
T KOG0916|consen 1574 WVLEGWSFLTTVDLFVSILAFHPTGWGL------------LLIAQLTREVKKDLGWWSGVWYLARAYDFFMGHLIFFPVA 1641 (1679)
T ss_pred HHHHHHhcccHHHHHHHHHHHhhHHHHH------------HHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred HhhhcCccchhhhhhhchhhhcchhhHHHHhhhccCCc
Q 001473 1027 ILSWFPFVSKFQTRLLFNQAFSRGLRISMILLRRKDRT 1064 (1072)
Q Consensus 1027 ~LSwfPfvs~fQTRlLFN~AFSrgl~is~Il~~~~~~~ 1064 (1072)
+||||||+++||||||||||||||++|++|++|++++.
T Consensus 1642 ~l~w~Pfi~~fqtr~LFn~afSR~l~i~~Il~gk~~~~ 1679 (1679)
T KOG0916|consen 1642 PLSWFPFISEFQTRMLFNQAFSRGLRISRILAGKQKKL 1679 (1679)
T ss_pred HHHHhhhhhHHHHHHHHHhcccccCCcchhhccCccCC
Confidence 99999999999999999999999999999999999863
No 2
>PF02364 Glucan_synthase: 1,3-beta-glucan synthase component ; InterPro: IPR003440 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This is the glycosyltransferase 48 family GT48 from CAZY, which consists of various 1,3-beta-glucan synthase components including Gls1, Gls2 and Gls3 from yeast. 1,3-beta-glucan synthase (2.4.1.34 from EC) also known as callose synthase catalyses the formation of a beta-1,3-glucan polymer that is a major component of the fungal cell wall []. The reaction catalysed is:- UDP-glucose + {1,3-beta-D-glucosyl}(N) = UDP + {1,3-beta-D-glucosyl}(N+1).; GO: 0003843 1,3-beta-D-glucan synthase activity, 0006075 1,3-beta-D-glucan biosynthetic process, 0000148 1,3-beta-D-glucan synthase complex, 0016020 membrane
Probab=100.00 E-value=1.5e-274 Score=2369.10 Aligned_cols=691 Identities=53% Similarity=0.877 Sum_probs=634.8
Q ss_pred cCCCCChhhhHhHhhhhcccCCCCCCCcccccccceeeeccccccccccChhhhccccC--CCccHHHHHHhhCchhhhh
Q 001473 175 VNVPTNLDARRRITFFANSLFMKMPSAPKVRDMISFSVLTPYYREDVLYSVDELNNENE--DGISTLFYLQKIYPDEWKN 252 (1072)
Q Consensus 175 ~~~P~~~EArRRi~FFanSL~m~mP~a~~V~~M~sfsVltPyY~E~Vl~S~~eL~~e~e--dgvsiL~YL~~i~PdEW~N 252 (1072)
+.+|+|+||||||+||||||+||||+||||++|||||||||||+|||+||++||++||| ||||+|+|||+||||||+|
T Consensus 1 ~~~P~~~EA~RRisFFanSL~~~mP~~~~V~~M~sfsVLtP~Y~E~Vl~Sl~eL~ke~e~~~~vtlL~YLk~l~p~EW~n 80 (817)
T PF02364_consen 1 EFFPRNSEARRRISFFANSLFMPMPEPPPVEKMPSFSVLTPYYSEKVLYSLKELIKENEQNDGVTLLEYLKQLYPDEWEN 80 (817)
T ss_pred CCCCCchHHHHHHHHHHHhcCCCCcCCCchhhccccccccccccceeccCHHHhhhcccccCCccHHHHHHHHChHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999 8999999999999999999
Q ss_pred HHhhhCC---CCCC------------C-----------------CCchhhhhhhhcccccccccccccccccchHHHHHH
Q 001473 253 LQKRIND---PKFN------------Y-----------------SDADKEEATCHWASYRGQTLSRTVRGMMYYKQALEL 300 (1072)
Q Consensus 253 F~er~k~---e~~~------------~-----------------~~~~~~~elR~WAS~RgQTL~RTVrGmM~Y~~ALkl 300 (1072)
|+||+|. |++. | ..|++++|+|+|||+|||||||||+|||||++|||+
T Consensus 81 F~er~k~~~~e~~~~~~~~~~~~~~~was~r~qtL~rtv~Gfm~~~~a~~LrtrLWASlR~QTLyRTV~G~m~y~~Alkl 160 (817)
T PF02364_consen 81 FVERTKRLAEESDAEESSEKEEELRLWASYRGQTLPRTVRGFMYYEPAYTLRTRLWASLRGQTLYRTVSGFMNYSKALKL 160 (817)
T ss_pred HHHHhcccchhhhhhccccchhhhhHHHHhcccCCCchhhhhhhhhHHHHHHhhhhhccHHHhhhhhhhhhhhHHHHHhh
Confidence 9999971 1100 0 126789999999999999999999999999999999
Q ss_pred hhhhhcCCccccccCcccccCCcHHHHHHHHHHhcccceEEeehhhhccCCCCcccccccchHHHHHHHHhCCCcEEEEe
Q 001473 301 QCFLESAGDNAIFGGYRIMESSQEDERASAQALVNMKFTYVASCQIYGAQKKSDDWRDRSCYKNILHLMIKYPSLRVAYL 380 (1072)
Q Consensus 301 l~~lE~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~KF~yVVscQ~Yg~~k~~~~~r~~a~~~di~~Lm~~~P~LrVAYi 380 (1072)
|+++|+++..+..+| +.+..+++++++|++||+||||||+||+||+ ++| +||++||++||+||||||
T Consensus 161 l~~~e~~~~~~~~~~------~~~~~~~~~~~~a~~KF~yVVs~Q~yg~~~~-----~~a--~~i~~Lm~~~P~LrVAYi 227 (817)
T PF02364_consen 161 LYRVENPSIEQMFGG------NYESLERELEAMADRKFTYVVSCQRYGKFKK-----EEA--EDIEFLMRAYPSLRVAYI 227 (817)
T ss_pred HhhccCCchhhhccC------chHHHHHHHHHHHhcCCCEEEecchhcCCCh-----HHH--HHHHHHHHhCCceEEEEE
Confidence 999999998776554 3455678999999999999999999999993 556 999999999999999999
Q ss_pred cccccccCCCccceEEEEEEecC-----CCccceeEEeecCCCCcccCCCCCcCccchhhhhcccccccccCCccccHHH
Q 001473 381 DEREEIVNGKSQKFHYSVLLKGG-----DKYDEEIYRIKLPGPPTVIGEGRPENQNHAIIFTRGEALQTIDMNQDNYFEE 455 (1072)
Q Consensus 381 de~~~~~~g~~~~~yySvLvk~~-----~~~~~eiYRIkLPG~~pilGEGKpeNQNhAiIFtRGE~lQtIDmNQDnYlEE 455 (1072)
||+++.++ +.+++||||||||+ +|+++|+||||||| |||||||||||||||||||||||+|||||||||||||
T Consensus 228 de~~~~~~-~~~~~yYS~Lv~~~~~~~~~g~~~~~yri~LpG-~pilGeGK~eNQNhaiiF~rGe~lQ~IDmNQDnYleE 305 (817)
T PF02364_consen 228 DEVPDRNG-GGEPEYYSVLVKGDCEIDENGKRQEIYRIKLPG-NPILGEGKPENQNHAIIFTRGEYLQTIDMNQDNYLEE 305 (817)
T ss_pred eeecccCC-CCCceEEEEEecCCccccccCcccceEEEECCC-CCcCCCCCccccceeEEEEccccccccccchhhhHHH
Confidence 99886544 35799999999998 47788999999999 9999999999999999999999999999999999999
Q ss_pred HhhhhhhHHHHhhccC-------------CCCCceEecccceeecccchhhhcccccchhhhHHHHHHhhcccceeeeec
Q 001473 456 AFKMRNVLEEFLKSTS-------------GQREPTILGLREHIFTGSVSSLAWFISNQETSFVTISQRILVNPLRVRFYY 522 (1072)
Q Consensus 456 aLKmRNlL~Ef~~~~~-------------g~~~~~IlG~REhIFTgsvssLa~f~a~qE~sFvTl~qR~LA~Pl~vR~HY 522 (1072)
||||||||+||++.+. +.+||||||+|||||||||||||||||+||||||||+||+||+|+ |||||
T Consensus 306 ~lK~rnlL~Ef~~~~~~~~~~~~~~~~~~~~~~~aIlG~RE~IFs~~vg~L~~~aa~qE~~F~Tl~qR~la~p~-~rlHY 384 (817)
T PF02364_consen 306 ALKMRNLLEEFEEMHGDSSSPYIPGIEEEGKRPVAILGFREHIFSENVGSLGDFAAGQEQSFGTLFQRTLANPL-VRLHY 384 (817)
T ss_pred HHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCceEecccceEecCCcchHHHHhhhhhHHHHHHHHHHHhcch-hhccC
Confidence 9999999999998762 368999999999999999999999999999999999999999999 99999
Q ss_pred cCCccccccccccCCcccccccccccchhhhcccccccccceeeeEeeeeeccccccCccccccchhhccCccccccchh
Q 001473 523 GHPDIFDRIFHITRGGIGKASRVINYGADIYAGMNSTLRGGYITHHEYIQVGKGRDMGMNQLSLSEARVAGVNGEQTFSR 602 (1072)
Q Consensus 523 GHPDvfd~~F~~TRGGvSKAsk~inLsEDIfaG~N~~lRGG~I~h~EYiQ~GKGRDvG~~qI~~FeaKIa~GnGEQ~LSR 602 (1072)
||||||||+||+||||||||||||||||||||||||+|||||||||||||||||||||||||++||||||+|||||+|||
T Consensus 385 GHPD~~n~~f~~TRGGvSKAsk~lhLsEDIfaG~n~~lRGG~i~h~ey~qcGKGRD~Gf~~I~~F~~KI~~G~GEQ~LSR 464 (817)
T PF02364_consen 385 GHPDVFNRIFMTTRGGVSKASKGLHLSEDIFAGMNATLRGGRIKHCEYIQCGKGRDVGFNSILNFETKIASGMGEQMLSR 464 (817)
T ss_pred CCchhhhhhheeccCccchHhhcccccHHHHHHHHHHhcCCceeehhhhhcccccccCchhhhhhHhHhcCCccchhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccccchhhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHhhccchhhhcCCCCCCC---------chHHHH--
Q 001473 603 DVYRLGHCFDFFRMLSFYFTTVGFYLSSMVIVLTVYVFLYGRLYLVMSGLEREILENPGMHQS---------MALEEA-- 671 (1072)
Q Consensus 603 d~yrLG~~ldffR~LSfYyt~~GFy~n~~~~vltvy~fly~~lylalsg~e~~~~~~~~~~~~---------~~l~~~-- 671 (1072)
|+|||||||||||||||||||||||+|||+||+|||+|+| +|++|++++.++.. |.++.+ ..|+++
T Consensus 465 e~yrLg~~ld~~R~LSfyy~~~Gf~~n~~~i~lsv~~f~~--~~~~L~~l~~~~~~-~~~~~~~~~~~~~g~~~l~p~~~ 541 (817)
T PF02364_consen 465 EYYRLGTRLDFFRFLSFYYAHPGFYINNMFIVLSVYLFLY--VYLNLSGLEHESII-CAYDKNTDVLEPIGCYNLQPVLD 541 (817)
T ss_pred HHHHhhccCCHHHHHHHHhcCccHhHhhHHHHHHHHHHHH--HHHHHHHHHHHHHh-hhhhcCCCccCCcccccccHHHH
Confidence 9999999999999999999999999999999999999999 66666677766532 122221 124444
Q ss_pred ---hhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhcceeEEEEeceEEeEeecccccccceeeecCCceEE
Q 001473 672 ---LATQSVFQLGLLLVLPMVMEIGLEKGFCSALCDFIIMQLQLASVFFAFQLGTKVHYFGKTILHGSCKYRATGRGFVV 748 (1072)
Q Consensus 672 ---l~~q~i~qlg~l~~lPm~~~~~lE~G~~~A~~~~~~~~l~l~~~F~~F~~gt~~h~~~~~il~GGAkY~aTGRGFvv 748 (1072)
+++||+||+|+++++||++|+++|+|+++|+.+|++||+||||+||||+||||+|||++||+|||||||||||||||
T Consensus 542 ~~~~~~~si~q~g~l~~lPl~~q~~lE~G~~~A~~~~~~~~lslsp~F~vF~~qt~a~~~~~~l~~GGAkYiaTGRGF~i 621 (817)
T PF02364_consen 542 WIARNVQSIFQLGFLSFLPLIVQELLERGFWKALTRFFKHQLSLSPVFEVFSCQTYAHYFGRTLLHGGAKYIATGRGFVI 621 (817)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcccchheeeeeehhhhhhhhhhhcCccEEEecCCceEE
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeechhhhhhhhhhhhHHHHHHHHHHHHHHHHhhccccCCcchhhhHHHHHHHHHHHHhhcccccCCCCccccchhhcHH
Q 001473 749 YHAKFSENYRQYSRSHFVKGLELVILLVLYEVYWHSYRSSNKFYLFITLSMWFLVGSWLFAPFVFNPSGFDWQKTVDDWT 828 (1072)
Q Consensus 749 ~h~~F~~~Y~~Ya~Shf~~g~el~~lLivy~~~g~~~~~~~~~y~~~t~s~W~~~~swl~aPf~FNP~gF~w~k~~~D~~ 828 (1072)
+|++|++||++|||||||+|+|+++||++|.++ +|...||++|++++|||+||||||||||+|+|+++||+
T Consensus 622 ~r~~F~~lY~~YA~Sh~y~G~el~llLl~~~~~---------~y~~~~~~~W~~v~sll~aPFiFNP~~F~w~~~~~Dy~ 692 (817)
T PF02364_consen 622 TRIPFAELYSRYARSHFYKGFELLLLLLFYTLT---------MYIPATLSFWFLVISLLFAPFIFNPHQFDWQKFFVDYR 692 (817)
T ss_pred EeccHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHhcCcccCchhHHHHhHH
Confidence 999999999999999999999999988866664 69999999999999999999999999999999999999
Q ss_pred HHhHhhccCCCCcccCCcchHhhhHHhhh--------------------hhhccccchhhhHHHHhhHHHhhheeeeeee
Q 001473 829 DWKRWMGNRGGIGTLPYRSWESWWDEEQE--------------------HLKFSNIRGRILEIILVFRFFIYQYGIVYHL 888 (1072)
Q Consensus 829 dw~~Wl~~~g~~~~~~~~SW~sWw~~E~~--------------------~lr~tg~~gk~~eiil~lRffi~qyGivy~L 888 (1072)
||++||++ |++.++++||++||++|++ |.|+++....+.|+++.+++++++++.++++
T Consensus 693 dw~~Wl~~--g~~~~~~~SW~~w~~~~~~~~tg~k~k~~~~~~e~~~~~~~r~~~~~~~~~ei~~~l~~~~~~~~~y~fi 770 (817)
T PF02364_consen 693 DWLRWLSR--GNSRPHDNSWISWWREERSRITGFKRKILEDISEKRFGDHLRASFFNLLFSEIILPLRFFIFQFIAYLFI 770 (817)
T ss_pred HHHHHHhc--CCCCccccccHHHHHHHHHHhccccceeeccchhccccccccceeeehhHHHHHHHHHHHHHHHhhheEE
Confidence 99999996 5899999999999999876 4445555556667777888888888888888
Q ss_pred eeccCCc
Q 001473 889 DIAHRTK 895 (1072)
Q Consensus 889 ~i~~~~k 895 (1072)
++..+++
T Consensus 771 nsq~~~~ 777 (817)
T PF02364_consen 771 NSQNGVK 777 (817)
T ss_pred EcccCCC
Confidence 7766554
No 3
>PF02364 Glucan_synthase: 1,3-beta-glucan synthase component ; InterPro: IPR003440 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This is the glycosyltransferase 48 family GT48 from CAZY, which consists of various 1,3-beta-glucan synthase components including Gls1, Gls2 and Gls3 from yeast. 1,3-beta-glucan synthase (2.4.1.34 from EC) also known as callose synthase catalyses the formation of a beta-1,3-glucan polymer that is a major component of the fungal cell wall []. The reaction catalysed is:- UDP-glucose + {1,3-beta-D-glucosyl}(N) = UDP + {1,3-beta-D-glucosyl}(N+1).; GO: 0003843 1,3-beta-D-glucan synthase activity, 0006075 1,3-beta-D-glucan biosynthetic process, 0000148 1,3-beta-D-glucan synthase complex, 0016020 membrane
Probab=98.09 E-value=8.6e-07 Score=108.12 Aligned_cols=43 Identities=53% Similarity=0.763 Sum_probs=39.4
Q ss_pred hhhhhhhcccccccccccccccccchHHHHHHhhhhhcCCccc
Q 001473 269 KEEATCHWASYRGQTLSRTVRGMMYYKQALELQCFLESAGDNA 311 (1072)
Q Consensus 269 ~~~elR~WAS~RgQTL~RTVrGmM~Y~~ALkll~~lE~~~~~~ 311 (1072)
...++|.|||+|||||.|||+|||||++|++|+++++.....+
T Consensus 100 ~~~~~~~was~r~qtL~rtv~Gfm~~~~a~~LrtrLWASlR~Q 142 (817)
T PF02364_consen 100 KEEELRLWASYRGQTLPRTVRGFMYYEPAYTLRTRLWASLRGQ 142 (817)
T ss_pred chhhhhHHHHhcccCCCchhhhhhhhhHHHHHHhhhhhccHHH
Confidence 3568999999999999999999999999999999999987654
No 4
>PRK11204 N-glycosyltransferase; Provisional
Probab=89.98 E-value=1.2 Score=50.91 Aligned_cols=182 Identities=19% Similarity=0.204 Sum_probs=94.8
Q ss_pred HHHHHHH-HhCCCcEEEEecccccccCCCccceEEEEEEecCCCccceeEEeecCCCCcccCCCCCcCccchhhhhcccc
Q 001473 363 KNILHLM-IKYPSLRVAYLDEREEIVNGKSQKFHYSVLLKGGDKYDEEIYRIKLPGPPTVIGEGRPENQNHAIIFTRGEA 441 (1072)
Q Consensus 363 ~di~~Lm-~~~P~LrVAYide~~~~~~g~~~~~yySvLvk~~~~~~~eiYRIkLPG~~pilGEGKpeNQNhAiIFtRGE~ 441 (1072)
+-++.++ +.||+.+|--||.-.+ |+..+ . ++.-..+...+--++.+. | .||+.|-|+|+-.++||+
T Consensus 71 ~~l~sl~~q~yp~~eiiVvdD~s~--d~t~~-----~-l~~~~~~~~~v~~i~~~~-n----~Gka~aln~g~~~a~~d~ 137 (420)
T PRK11204 71 ETISHLLALRYPNYEVIAINDGSS--DNTGE-----I-LDRLAAQIPRLRVIHLAE-N----QGKANALNTGAAAARSEY 137 (420)
T ss_pred HHHHHHHhCCCCCeEEEEEECCCC--ccHHH-----H-HHHHHHhCCcEEEEEcCC-C----CCHHHHHHHHHHHcCCCE
Confidence 4444444 4689888888776432 11100 0 000000111233344444 3 479999999999999999
Q ss_pred cccccCCccccH-HHHhhhhhhHHHHhhccCCCCCceEecccceeecccchhhhcccccchhhhHHHH---HHhhcccce
Q 001473 442 LQTIDMNQDNYF-EEAFKMRNVLEEFLKSTSGQREPTILGLREHIFTGSVSSLAWFISNQETSFVTIS---QRILVNPLR 517 (1072)
Q Consensus 442 lQtIDmNQDnYl-EEaLKmRNlL~Ef~~~~~g~~~~~IlG~REhIFTgsvssLa~f~a~qE~sFvTl~---qR~LA~Pl~ 517 (1072)
+=.+|.+ +.+ .++| +++++.|++++ .+.+++-+-.+-. ..+.++....++-.+...+. |+.+..+.
T Consensus 138 i~~lDaD--~~~~~d~L--~~l~~~~~~~~----~v~~v~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 207 (420)
T PRK11204 138 LVCIDGD--ALLDPDAA--AYMVEHFLHNP----RVGAVTGNPRIRN-RSTLLGRIQVGEFSSIIGLIKRAQRVYGRVF- 207 (420)
T ss_pred EEEECCC--CCCChhHH--HHHHHHHHhCC----CeEEEECCceecc-chhHHHHHHHHHHHHhhhHHHHHHHHhCCce-
Confidence 9998754 444 3333 35666776543 3445543322222 12233332222222222222 22222111
Q ss_pred eeeeccCCccccccccccCCcccccccccccchhhhcccccccccceeeeEeeeee
Q 001473 518 VRFYYGHPDIFDRIFHITRGGIGKASRVINYGADIYAGMNSTLRGGYITHHEYIQV 573 (1072)
Q Consensus 518 vR~HYGHPDvfd~~F~~TRGGvSKAsk~inLsEDIfaG~N~~lRGG~I~h~EYiQ~ 573 (1072)
..-|+-=.+.|.....-||...- .++||.--++-...+|.++.++.-..|
T Consensus 208 --~~~G~~~~~rr~~l~~vgg~~~~----~~~ED~~l~~rl~~~G~~i~~~p~~~~ 257 (420)
T PRK11204 208 --TVSGVITAFRKSALHEVGYWSTD----MITEDIDISWKLQLRGWDIRYEPRALC 257 (420)
T ss_pred --EecceeeeeeHHHHHHhCCCCCC----cccchHHHHHHHHHcCCeEEeccccEE
Confidence 11133333444444455776532 368999999998899999988776554
No 5
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=88.98 E-value=11 Score=44.40 Aligned_cols=42 Identities=24% Similarity=0.469 Sum_probs=32.1
Q ss_pred CCCcCccchhhhhcccccccccCCccccHH-HHhhhhhhHHHHhhcc
Q 001473 425 GRPENQNHAIIFTRGEALQTIDMNQDNYFE-EAFKMRNVLEEFLKST 470 (1072)
Q Consensus 425 GKpeNQNhAiIFtRGE~lQtIDmNQDnYlE-EaLKmRNlL~Ef~~~~ 470 (1072)
||+.+-|+|+=.++||++ +=|++|+.++ +++ +++++.|++++
T Consensus 118 Gka~AlN~gl~~s~g~~v--~~~DaD~~~~~d~L--~~l~~~f~~~~ 160 (439)
T TIGR03111 118 GKAKALNAAIYNSIGKYI--IHIDSDGKLHKDAI--KNMVTRFENNP 160 (439)
T ss_pred CHHHHHHHHHHHccCCEE--EEECCCCCcChHHH--HHHHHHHHhCC
Confidence 699999999999999995 5556788874 344 47788887543
No 6
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=88.18 E-value=0.54 Score=54.85 Aligned_cols=135 Identities=15% Similarity=0.076 Sum_probs=69.7
Q ss_pred CCCCcCccchhhhhcccccccccCCccccHHHHhhhhhhHHHHhhccCCCCCceEecccceeecccchhhhcccccchhh
Q 001473 424 EGRPENQNHAIIFTRGEALQTIDMNQDNYFEEAFKMRNVLEEFLKSTSGQREPTILGLREHIFTGSVSSLAWFISNQETS 503 (1072)
Q Consensus 424 EGKpeNQNhAiIFtRGE~lQtIDmNQDnYlEEaLKmRNlL~Ef~~~~~g~~~~~IlG~REhIFTgsvssLa~f~a~qE~s 503 (1072)
.||+-+.|+|+..++||++-++|+ |+.++.- -++.+.+.|++++ .+.+++.+-.+...+ +.++....++-.+
T Consensus 141 ~Gka~AlN~gl~~a~~d~iv~lDA--D~~~~~d-~L~~lv~~~~~~~----~~g~v~g~~~~~~~~-~~~~~~~~~e~~~ 212 (444)
T PRK14583 141 QGKAIALRMGAAAARSEYLVCIDG--DALLDKN-AVPYLVAPLIANP----RTGAVTGNPRIRTRS-TLIGRVQVGEFSS 212 (444)
T ss_pred CCHHHHHHHHHHhCCCCEEEEECC--CCCcCHH-HHHHHHHHHHhCC----CeEEEEccceecCCC-cchhhHHHHHHHH
Confidence 479999999999999999999987 4444322 2335556665433 233443322222221 2222222222122
Q ss_pred hHHHHHHhhcccceeeee-ccCCccccccccccCCcccccccccccchhhhcccccccccceeeeEeee
Q 001473 504 FVTISQRILVNPLRVRFY-YGHPDIFDRIFHITRGGIGKASRVINYGADIYAGMNSTLRGGYITHHEYI 571 (1072)
Q Consensus 504 FvTl~qR~LA~Pl~vR~H-YGHPDvfd~~F~~TRGGvSKAsk~inLsEDIfaG~N~~lRGG~I~h~EYi 571 (1072)
+..+.+|.... .+.-+- =|+==.|.|.-...=||-+- -.+.||+--|+....+|.+|.+++-.
T Consensus 213 ~~~~~~~~~~~-~g~~~~~sG~~~~~rr~al~~vGg~~~----~~i~ED~dl~~rl~~~G~~i~~~p~a 276 (444)
T PRK14583 213 IIGLIKRTQRV-YGQVFTVSGVVAAFRRRALADVGYWSP----DMITEDIDISWKLQLKHWSVFFEPRG 276 (444)
T ss_pred HHHHHHHHHHH-hCCceEecCceeEEEHHHHHHcCCCCC----CcccccHHHHHHHHHcCCeEEEeecc
Confidence 22222322211 000000 02212222333333355441 24789999999999999999987743
No 7
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=84.24 E-value=0.75 Score=58.57 Aligned_cols=189 Identities=19% Similarity=0.205 Sum_probs=115.2
Q ss_pred CCCCcCccchhhhhcccccccccCCccccHHHHhhhhhhHHHHhhccCCCCCceEecccceeeccc-----chhhhcccc
Q 001473 424 EGRPENQNHAIIFTRGEALQTIDMNQDNYFEEAFKMRNVLEEFLKSTSGQREPTILGLREHIFTGS-----VSSLAWFIS 498 (1072)
Q Consensus 424 EGKpeNQNhAiIFtRGE~lQtIDmNQDnYlEEaLKmRNlL~Ef~~~~~g~~~~~IlG~REhIFTgs-----vssLa~f~a 498 (1072)
.||..|-|||+-.++||++-++|++. ..+.-. .++++..|.++. ++.+|+.+=+.++.. .+....+..
T Consensus 325 ~gKAGnLN~aL~~a~GEyIavlDAD~--ip~pdf-L~~~V~~f~~dP----~VglVQtp~~f~n~dp~~rnl~~~~~~~~ 397 (852)
T PRK11498 325 HAKAGNINNALKYAKGEFVAIFDCDH--VPTRSF-LQMTMGWFLKDK----KLAMMQTPHHFFSPDPFERNLGRFRKTPN 397 (852)
T ss_pred cchHHHHHHHHHhCCCCEEEEECCCC--CCChHH-HHHHHHHHHhCC----CeEEEEcceeccCCchHHHhhHHHhhccc
Confidence 48999999999999999999999853 332211 224445665543 578888776655432 222112222
Q ss_pred cchhhhHHHHHHhhcccceeeeeccCCccccccccccCCcccccccccccchhhhcccccccccceeeeEe-eeeecccc
Q 001473 499 NQETSFVTISQRILVNPLRVRFYYGHPDIFDRIFHITRGGIGKASRVINYGADIYAGMNSTLRGGYITHHE-YIQVGKGR 577 (1072)
Q Consensus 499 ~qE~sFvTl~qR~LA~Pl~vR~HYGHPDvfd~~F~~TRGGvSKAsk~inLsEDIfaG~N~~lRGG~I~h~E-YiQ~GKGR 577 (1072)
-+| .|-...|+-... ....+--|+-=++.|.-...=||...- -++||.--++....+|-++.|.. =...|-
T Consensus 398 e~~-~fy~~iq~g~~~-~~a~~~~Gs~aviRReaLeeVGGfd~~----titED~dlslRL~~~Gyrv~yl~~~~a~gl-- 469 (852)
T PRK11498 398 EGT-LFYGLVQDGNDM-WDATFFCGSCAVIRRKPLDEIGGIAVE----TVTEDAHTSLRLHRRGYTSAYMRIPQAAGL-- 469 (852)
T ss_pred chh-HHHHHHHhHHHh-hcccccccceeeeEHHHHHHhcCCCCC----ccCccHHHHHHHHHcCCEEEEEeccceeEE--
Confidence 222 344455554332 344455677777777777778998742 37999999999999999999864 333332
Q ss_pred ccCccccccch---hhccCccccccchhhhhhcccccchhhhhhhhccccchhhHHH
Q 001473 578 DMGMNQLSLSE---ARVAGVNGEQTFSRDVYRLGHCFDFFRMLSFYFTTVGFYLSSM 631 (1072)
Q Consensus 578 DvG~~qI~~Fe---aKIa~GnGEQ~LSRd~yrLG~~ldffR~LSfYyt~~GFy~n~~ 631 (1072)
.=.++..+- .+-+.| ..|.+.++---++..+.+..=+ +|....=++++.+
T Consensus 470 --aPesl~~~~~QR~RWarG-~lQi~r~~~pl~~~gL~~~qRl-~y~~~~l~~l~g~ 522 (852)
T PRK11498 470 --ATESLSAHIGQRIRWARG-MVQIFRLDNPLTGKGLKLAQRL-CYANAMLHFLSGI 522 (852)
T ss_pred --CCCCHHHHHHHHHHHHHH-HHHHHHHhChhccCCCCHHHHH-HHHHHHHHHHHHH
Confidence 223555443 446777 5777776644567777774333 2333333444443
No 8
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=63.68 E-value=15 Score=37.46 Aligned_cols=101 Identities=12% Similarity=0.088 Sum_probs=65.4
Q ss_pred CCCcCccchhhhhcccccccccCCccccH-HHHhhhhhhHHHHhhccCCCCCceEecccceeecccchhhhcccccchhh
Q 001473 425 GRPENQNHAIIFTRGEALQTIDMNQDNYF-EEAFKMRNVLEEFLKSTSGQREPTILGLREHIFTGSVSSLAWFISNQETS 503 (1072)
Q Consensus 425 GKpeNQNhAiIFtRGE~lQtIDmNQDnYl-EEaLKmRNlL~Ef~~~~~g~~~~~IlG~REhIFTgsvssLa~f~a~qE~s 503 (1072)
||..|-|+++-..+||++=.+|.. ..+ .++|+ .+++.+.. ..+.++|-+
T Consensus 73 ~~~~~~n~g~~~a~~d~i~~~D~D--~~~~~~~l~--~l~~~~~~-----~~~~~v~~~--------------------- 122 (196)
T cd02520 73 PKVNNLIKGYEEARYDILVISDSD--ISVPPDYLR--RMVAPLMD-----PGVGLVTCL--------------------- 122 (196)
T ss_pred HhHHHHHHHHHhCCCCEEEEECCC--ceEChhHHH--HHHHHhhC-----CCCCeEEee---------------------
Confidence 577889999999999999999874 333 22332 44555532 134555533
Q ss_pred hHHHHHHhhcccceeeeeccCCccccccccccCCcccccccccccchhhhcccccccccceeeeEeeeee
Q 001473 504 FVTISQRILVNPLRVRFYYGHPDIFDRIFHITRGGIGKASRVINYGADIYAGMNSTLRGGYITHHEYIQV 573 (1072)
Q Consensus 504 FvTl~qR~LA~Pl~vR~HYGHPDvfd~~F~~TRGGvSKAsk~inLsEDIfaG~N~~lRGG~I~h~EYiQ~ 573 (1072)
...|+-=.+.|-.+-.-||-+. ....+.||..-++....+|.+|.+++-..+
T Consensus 123 ----------------~~~g~~~~~r~~~~~~~ggf~~--~~~~~~eD~~l~~rl~~~G~~i~~~~~~~~ 174 (196)
T cd02520 123 ----------------CAFGKSMALRREVLDAIGGFEA--FADYLAEDYFLGKLIWRLGYRVVLSPYVVM 174 (196)
T ss_pred ----------------cccCceeeeEHHHHHhccChHH--HhHHHHHHHHHHHHHHHcCCeEEEcchhee
Confidence 2333333455555555577632 123468999999999999999999877544
No 9
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=62.06 E-value=9.7 Score=38.95 Aligned_cols=138 Identities=17% Similarity=0.144 Sum_probs=80.3
Q ss_pred CCCCcCccchhhhhcccccccccCCccccHHHHhhhhhhHHHHhhccCCCCCceEecccceeecccch-hhhcccccchh
Q 001473 424 EGRPENQNHAIIFTRGEALQTIDMNQDNYFEEAFKMRNVLEEFLKSTSGQREPTILGLREHIFTGSVS-SLAWFISNQET 502 (1072)
Q Consensus 424 EGKpeNQNhAiIFtRGE~lQtIDmNQDnYlEEaLKmRNlL~Ef~~~~~g~~~~~IlG~REhIFTgsvs-sLa~f~a~qE~ 502 (1072)
-||.-|-|+|+=..+||++-.+|. |.++++. .+.++++.+++++ ++.+++.+.+...++.. .+..-......
T Consensus 70 ~~~~~~~n~~~~~a~~d~i~~lD~--D~~~~~~-~l~~l~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 142 (234)
T cd06421 70 HAKAGNLNNALAHTTGDFVAILDA--DHVPTPD-FLRRTLGYFLDDP----KVALVQTPQFFYNPDPFDWLADGAPNEQE 142 (234)
T ss_pred CCcHHHHHHHHHhCCCCEEEEEcc--ccCcCcc-HHHHHHHHHhcCC----CeEEEecceEEecCCcchhHHHHHHHHHH
Confidence 367788899999999999999886 8888654 6668888886532 45666655443333221 12222222333
Q ss_pred hhHHHHHHhhcccceeeeeccCCccccccccccCCcccccccccccchhhhcccccccccceeeeEeeeee
Q 001473 503 SFVTISQRILVNPLRVRFYYGHPDIFDRIFHITRGGIGKASRVINYGADIYAGMNSTLRGGYITHHEYIQV 573 (1072)
Q Consensus 503 sFvTl~qR~LA~Pl~vR~HYGHPDvfd~~F~~TRGGvSKAsk~inLsEDIfaG~N~~lRGG~I~h~EYiQ~ 573 (1072)
.|.+..+... ++.++-.=-|.-=++.|..+..=||... ..+.||..-+......|.+|.+.....|
T Consensus 143 ~~~~~~~~~~-~~~~~~~~~g~~~~~r~~~~~~ig~~~~----~~~~eD~~l~~r~~~~g~~i~~~~~~~~ 208 (234)
T cd06421 143 LFYGVIQPGR-DRWGAAFCCGSGAVVRREALDEIGGFPT----DSVTEDLATSLRLHAKGWRSVYVPEPLA 208 (234)
T ss_pred HHHHHHHHHH-hhcCCceecCceeeEeHHHHHHhCCCCc----cceeccHHHHHHHHHcCceEEEecCccc
Confidence 3332221111 1111111123333444444444466652 2467999999999999999988665444
No 10
>PF12823 DUF3817: Domain of unknown function (DUF3817); InterPro: IPR023845 This domain is associated with, strictly bacterial integral membrane proteins. It occurs in proteins that on rare occasions are fused to transporter domains such as the major facilitator superfamily domain. Of three invariant residues, two occur as a His-Gly dipeptide in the middle of three predicted transmembrane helices.
Probab=53.19 E-value=53 Score=31.56 Aligned_cols=67 Identities=19% Similarity=0.334 Sum_probs=47.9
Q ss_pred hhHHHHHHHHHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHH-Hhhhh
Q 001473 901 GLSWLVLVTTLLVLKMVSMGGRRSGAEFQLMFRIKALVFLGFMSVMTVLFVVCGLTISDLFACMLA-FLPTG 971 (1072)
Q Consensus 901 ~lsw~viv~~~~il~~vs~~r~k~sa~~ql~~Rik~llf~~~v~vii~l~~l~~lt~~Difa~~La-fiptG 971 (1072)
|.||++++.+...+|...-.. .--+.+-.+.+++|++.+...+.+..-.+|+.......++| ++|.|
T Consensus 14 gisll~Ll~iamplKy~~~~~----~~v~~~G~iHG~lF~~Yl~~~~~~~~~~rW~~~~~~~~llas~iPfg 81 (92)
T PF12823_consen 14 GISLLLLLFIAMPLKYLAGNP----EAVKIIGPIHGFLFMLYLVAALDLASKYRWSLKRTLLALLASVIPFG 81 (92)
T ss_pred HHHHHHHHHHHHHHHHHhCCC----chhhhcchhHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHccccc
Confidence 578888887777777653111 00011112899999999999999999999999998888876 77865
No 11
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=45.77 E-value=3.4e+02 Score=34.79 Aligned_cols=140 Identities=8% Similarity=-0.045 Sum_probs=75.9
Q ss_pred CCCCcCccchhhh--hcccccccccCCccccH-HHHhhhhhhHHHHhhccCCCCCceEecccceeecccchhhhcccccc
Q 001473 424 EGRPENQNHAIIF--TRGEALQTIDMNQDNYF-EEAFKMRNVLEEFLKSTSGQREPTILGLREHIFTGSVSSLAWFISNQ 500 (1072)
Q Consensus 424 EGKpeNQNhAiIF--tRGE~lQtIDmNQDnYl-EEaLKmRNlL~Ef~~~~~g~~~~~IlG~REhIFTgsvssLa~f~a~q 500 (1072)
+.|.-|-|+++=- .++||+=+.|++- .+ -+++ +.+.+.++.++ .+.+|-.+-.+.. .-+-++...+--
T Consensus 204 ~~KaGNl~~~~~~~~~~~eyivvLDADs--~m~~d~L--~~lv~~m~~dP----~vGlVQt~~~~~n-~~slfaR~qqf~ 274 (691)
T PRK05454 204 GRKAGNIADFCRRWGGAYDYMVVLDADS--LMSGDTL--VRLVRLMEANP----RAGLIQTLPVAVG-ADTLFARLQQFA 274 (691)
T ss_pred CccHHHHHHHHHhcCCCcCEEEEEcCCC--CCCHHHH--HHHHHHHhhCc----CEEEEeCCccCcC-CCCHHHHHHHHH
Confidence 4577788887766 4459999999853 33 2333 36666776543 3445443222221 222232222111
Q ss_pred hhhhHHHHHHhhcccceeeeec-cCCccccccccccCCcccccc-----cccccchhhhcccccccccceeeeEeeee
Q 001473 501 ETSFVTISQRILVNPLRVRFYY-GHPDIFDRIFHITRGGIGKAS-----RVINYGADIYAGMNSTLRGGYITHHEYIQ 572 (1072)
Q Consensus 501 E~sFvTl~qR~LA~Pl~vR~HY-GHPDvfd~~F~~TRGGvSKAs-----k~inLsEDIfaG~N~~lRGG~I~h~EYiQ 572 (1072)
...++.+.++-++.=-+.--+| ||-=++++.=+...||..+=. .+--||||.--|.-.-.+|=+|.+...+.
T Consensus 275 ~~~y~~~~~~G~~~w~~~~g~f~G~naIiR~~af~~~~glp~L~g~~p~~~~~LseD~~~a~~l~~~GyrV~~~pd~~ 352 (691)
T PRK05454 275 TRVYGPLFAAGLAWWQGGEGNYWGHNAIIRVKAFAEHCGLPPLPGRGPFGGHILSHDFVEAALMRRAGWGVWLAPDLP 352 (691)
T ss_pred HHHHHHHHHhhhhhhccCccccccceEEEEHHHHHHhcCCccccccCCCCCCcccHHHHHHHHHHHCCCEEEEcCccc
Confidence 1112222221111100011123 888888887666666553311 13459999999999999999999987753
No 12
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=36.18 E-value=15 Score=41.71 Aligned_cols=126 Identities=15% Similarity=0.102 Sum_probs=72.1
Q ss_pred ccCCCCCcCccchhhhhcccccccccCC---ccccHHHHhhhhhhHHHHhhccCCCCCceEecccceeeccc-chhhhcc
Q 001473 421 VIGEGRPENQNHAIIFTRGEALQTIDMN---QDNYFEEAFKMRNVLEEFLKSTSGQREPTILGLREHIFTGS-VSSLAWF 496 (1072)
Q Consensus 421 ilGEGKpeNQNhAiIFtRGE~lQtIDmN---QDnYlEEaLKmRNlL~Ef~~~~~g~~~~~IlG~REhIFTgs-vssLa~f 496 (1072)
.=..||+.++|.|+=..+||++=++|+. -.+++.|+.+ .|+.... .+++|.+.+..... .+.++..
T Consensus 120 ~~~~gK~~al~~~l~~~~~d~V~~~DaD~~~~~d~l~~~~~------~f~~~~~----~~v~~~~~~~~~~~~~~~l~~~ 189 (439)
T COG1215 120 KKNGGKAGALNNGLKRAKGDVVVILDADTVPEPDALRELVS------PFEDPPV----GAVVGTPRIRNRPDPSNLLGRI 189 (439)
T ss_pred ccCccchHHHHHHHhhcCCCEEEEEcCCCCCChhHHHHHHh------hhcCCCe----eEEeCCceeeecCChhhhcchh
Confidence 4467899999999999999999999986 3566666655 6765431 25777665544221 1111111
Q ss_pred cccchhhhHHHHHHhhcccceeeeeccCCccccccccccCCccccccc-----------ccccchhhhccccccccccee
Q 001473 497 ISNQETSFVTISQRILVNPLRVRFYYGHPDIFDRIFHITRGGIGKASR-----------VINYGADIYAGMNSTLRGGYI 565 (1072)
Q Consensus 497 ~a~qE~sFvTl~qR~LA~Pl~vR~HYGHPDvfd~~F~~TRGGvSKAsk-----------~inLsEDIfaG~N~~lRGG~I 565 (1072)
-+.......-.. ...+...| ...+.+|.+.|=| .-.+.||.=-++-...+|.++
T Consensus 190 ~~~~~~~~~~~~-------~~~~~~~g--------~~~~~~G~~~~~rr~aL~~~g~~~~~~i~ED~~lt~~l~~~G~~~ 254 (439)
T COG1215 190 QAIEYLSAFYFR-------LRAASKGG--------LISFLSGSSSAFRRSALEEVGGWLEDTITEDADLTLRLHLRGYRV 254 (439)
T ss_pred cchhhhhhHHHh-------hhhhhhcC--------CeEEEcceeeeEEHHHHHHhCCCCCCceeccHHHHHHHHHCCCeE
Confidence 111111111111 11122223 3334444444433 235778888887777999999
Q ss_pred eeEeee
Q 001473 566 THHEYI 571 (1072)
Q Consensus 566 ~h~EYi 571 (1072)
.++.--
T Consensus 255 ~~~~~~ 260 (439)
T COG1215 255 VYVPEA 260 (439)
T ss_pred EEeecc
Confidence 997654
No 13
>PHA03048 IMV membrane protein; Provisional
Probab=34.22 E-value=82 Score=30.71 Aligned_cols=30 Identities=23% Similarity=0.381 Sum_probs=19.2
Q ss_pred cchhhhhhhhccccchhhHHHHHHHHHHHH
Q 001473 611 FDFFRMLSFYFTTVGFYLSSMVIVLTVYVF 640 (1072)
Q Consensus 611 ldffR~LSfYyt~~GFy~n~~~~vltvy~f 640 (1072)
||.+++++=||+++=.-==-++++-++++|
T Consensus 1 MDi~~~~~ny~S~vli~GIiLL~~aCIfAf 30 (93)
T PHA03048 1 MDIMGMISNYFSTALIGGIILLAASCIFAF 30 (93)
T ss_pred CCHHHHhhcccchHHHHHHHHHHHHHHHhh
Confidence 699999999999874333333444444444
No 14
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=34.15 E-value=1.4e+02 Score=29.16 Aligned_cols=31 Identities=23% Similarity=0.436 Sum_probs=19.6
Q ss_pred cchhhhhhhhccccchhhHHHHHHHHHHHHH
Q 001473 611 FDFFRMLSFYFTTVGFYLSSMVIVLTVYVFL 641 (1072)
Q Consensus 611 ldffR~LSfYyt~~GFy~n~~~~vltvy~fl 641 (1072)
||.+++++=||+++=+-==-++++-++++|+
T Consensus 1 MDi~~~i~ny~s~vli~GIiLL~~ACIFAfi 31 (91)
T PHA02680 1 MDIFETLKSYYSGVLICGVLLLTAACVFAFV 31 (91)
T ss_pred CcHHHHHHHhccHHHHHHHHHHHHHHHHhhh
Confidence 6999999999998733333334444444443
No 15
>PF05794 Tcp11: T-complex protein 11; InterPro: IPR008862 This family consists of several eukaryotic T-complex protein 11 (Tcp11) related sequences. Tcp11 is only expressed in fertile adult mammalian testes and is thought to be important in sperm function and fertility. The family also contains the Saccharomyces cerevisiae Sok1 protein which is known to suppress cyclic AMP-dependent protein kinase mutants [].
Probab=34.10 E-value=2e+02 Score=33.85 Aligned_cols=91 Identities=18% Similarity=0.232 Sum_probs=58.0
Q ss_pred chhhHHHHHHHHHHHHHHhcCCCchhhHHHHHHH--HHHHHhhcCcccceeecCCchhHHHHHHHHHHHHhccCCCc--h
Q 001473 23 MHSAVIECYETLREIIYGLLEDETDRNVVKQICY--NVDISIQQHRFLNEFRMAGMPSLCEKLEKFVKLLLSKYEDV--D 98 (1072)
Q Consensus 23 ~~~av~e~y~s~~~il~~l~~~~~~~~~v~~i~~--~i~~~i~~~~~~~~f~~~~Lp~l~~~~~~l~~~l~~~~~~~--~ 98 (1072)
...-+..-++.+|++|..|+ ++.++.-|.+.++ -|.+-+++|.+- +..+..-+.++++.+=.|-.|. .
T Consensus 50 ~~~~~~~Ll~~ike~L~~ll-~~~~~~~I~e~LD~~li~Qq~~~g~~D-------~~~l~~~i~~~l~~~CAP~RD~~v~ 121 (441)
T PF05794_consen 50 DYSRLPQLLEEIKEILLSLL-PSRLRQEIEEVLDLELIRQQLEHGVLD-------LVKLARFIISLLKKLCAPMRDEEVK 121 (441)
T ss_pred ChhHHHHHHHHHHHHHHHhc-CHHHHHHHHHHCChHHHHHHHhcCCcC-------HHHHHHHHHHHHHHhCCCCCcHHHH
Confidence 33445777899999999999 4455444544433 255556665543 6677777777777665543331 1
Q ss_pred ------------hhHHhHHHHHHHHHHHHHHHhhhcC
Q 001473 99 ------------VYKSQIINFLQDIMKIILQDIMVNG 123 (1072)
Q Consensus 99 ------------~~~~~vv~~l~~l~e~~~~d~~~~~ 123 (1072)
.....+|+.|..+++++ |.|+-+
T Consensus 122 ~l~~~~~~~~~~~~~~~~V~~lr~if~~l--e~MklD 156 (441)
T PF05794_consen 122 ALVEKIEEGCTESSATDIVDGLRFIFEIL--ELMKLD 156 (441)
T ss_pred HHHHHHHhccccCCHHHHHHHHHHHHHHH--HHHHHH
Confidence 12357889999999888 777655
No 16
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=33.09 E-value=1.1e+02 Score=35.26 Aligned_cols=130 Identities=12% Similarity=0.108 Sum_probs=67.5
Q ss_pred CCCcCccchhhhhcccccccccCCccccH-HHHhhhhhhHHHHhhccCCCCCceEecccceeecccchhh-hccccc-ch
Q 001473 425 GRPENQNHAIIFTRGEALQTIDMNQDNYF-EEAFKMRNVLEEFLKSTSGQREPTILGLREHIFTGSVSSL-AWFISN-QE 501 (1072)
Q Consensus 425 GKpeNQNhAiIFtRGE~lQtIDmNQDnYl-EEaLKmRNlL~Ef~~~~~g~~~~~IlG~REhIFTgsvssL-a~f~a~-qE 501 (1072)
||.-|.++++--++||++=..|.+ ... .+.| +.+++.|+. + .+.+++-. + .......+ +.+.+. .+
T Consensus 113 ~K~~~l~~~~~~a~ge~i~~~DaD--~~~~p~~L--~~lv~~~~~-~----~v~~V~~~-~-~~~~~~~~~~~l~~~~~~ 181 (373)
T TIGR03472 113 RKVSNLINMLPHARHDILVIADSD--ISVGPDYL--RQVVAPLAD-P----DVGLVTCL-Y-RGRPVPGFWSRLGAMGIN 181 (373)
T ss_pred hHHHHHHHHHHhccCCEEEEECCC--CCcChhHH--HHHHHHhcC-C----CcceEecc-c-cCCCCCCHHHHHHHHHhh
Confidence 688899988888999999999985 333 3343 366677753 2 23333221 0 11111111 111000 00
Q ss_pred hhhHHHHHHhhcccceeeeeccCC--ccccccccccCCcccccccccccchhhhcccccccccceeeeEee
Q 001473 502 TSFVTISQRILVNPLRVRFYYGHP--DIFDRIFHITRGGIGKASRVINYGADIYAGMNSTLRGGYITHHEY 570 (1072)
Q Consensus 502 ~sFvTl~qR~LA~Pl~vR~HYGHP--Dvfd~~F~~TRGGvSKAsk~inLsEDIfaG~N~~lRGG~I~h~EY 570 (1072)
..|.-. -..+.+++ +...++. =.+-|.....-||...- .-++.||..-|.....+|.+|..++.
T Consensus 182 ~~~~~~--~~~~~~~~-~~~~~~G~~~a~RR~~l~~iGGf~~~--~~~~~ED~~l~~~i~~~G~~v~~~~~ 247 (373)
T TIGR03472 182 HNFLPS--VMVARALG-RARFCFGATMALRRATLEAIGGLAAL--AHHLADDYWLGELVRALGLRVVLAPV 247 (373)
T ss_pred hhhhHH--HHHHHhcc-CCccccChhhheeHHHHHHcCChHHh--cccchHHHHHHHHHHHcCCeEEecch
Confidence 011000 00111111 1111222 23555556666887421 12467999999999999999987654
No 17
>PRK11281 hypothetical protein; Provisional
Probab=29.99 E-value=3.2e+02 Score=36.91 Aligned_cols=42 Identities=14% Similarity=0.026 Sum_probs=25.4
Q ss_pred HhHhhccCCCCcccCCcchHhhhHHhhhhhhccccchhhhHHHHhhHH
Q 001473 830 WKRWMGNRGGIGTLPYRSWESWWDEEQEHLKFSNIRGRILEIILVFRF 877 (1072)
Q Consensus 830 w~~Wl~~~g~~~~~~~~SW~sWw~~E~~~lr~tg~~gk~~eiil~lRf 877 (1072)
+...|.+++|++.. =-.|-++..+++|. .-.++.-++..+-+
T Consensus 594 ~~~~~~~~~Gl~~~----HF~w~~~~~~~~~~--~~~~~~~~~~pl~~ 635 (1113)
T PRK11281 594 TCYRVLRPNGVAER----HFGMPKEQVSHFRR--QIVRLSLALLPLLF 635 (1113)
T ss_pred HHHHHhCCCCeeHH----hcCCCHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 34556667766654 35677777888877 44455545555544
No 18
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=29.24 E-value=61 Score=40.99 Aligned_cols=158 Identities=16% Similarity=0.151 Sum_probs=94.0
Q ss_pred CCCcCccchhhhhcccccccccCCccccH-HHHhhhhhhHHHHhhccCCCCCceEecccceeecc-----cchhhhcccc
Q 001473 425 GRPENQNHAIIFTRGEALQTIDMNQDNYF-EEAFKMRNVLEEFLKSTSGQREPTILGLREHIFTG-----SVSSLAWFIS 498 (1072)
Q Consensus 425 GKpeNQNhAiIFtRGE~lQtIDmNQDnYl-EEaLKmRNlL~Ef~~~~~g~~~~~IlG~REhIFTg-----svssLa~f~a 498 (1072)
||+-|=|||+=.++||++=++|+.. .. .++| ++++..|++++ .+++++.+=+.++. +.+.. ..+.
T Consensus 215 ~KAgnLN~al~~a~gd~Il~lDAD~--v~~pd~L--~~~v~~f~~dp----~v~~Vqtp~~f~~p~~~~~nl~~~-~~~~ 285 (713)
T TIGR03030 215 AKAGNINNALKHTDGELILIFDADH--VPTRDFL--QRTVGWFVEDP----KLFLVQTPHFFVSPDPIERNLGTF-RRMP 285 (713)
T ss_pred CChHHHHHHHHhcCCCEEEEECCCC--CcChhHH--HHHHHHHHhCC----CEEEEeCCeeccCCCHHhhhhHHH-HHhh
Confidence 6899999999999999999999754 33 2333 34555676543 56777665333321 22221 2222
Q ss_pred cchhhhHHHHHHhhcccceeeeeccCCccccccccccCCcccccccccccchhhhcccccccccceeeeEeeeeeccccc
Q 001473 499 NQETSFVTISQRILVNPLRVRFYYGHPDIFDRIFHITRGGIGKASRVINYGADIYAGMNSTLRGGYITHHEYIQVGKGRD 578 (1072)
Q Consensus 499 ~qE~sFvTl~qR~LA~Pl~vR~HYGHPDvfd~~F~~TRGGvSKAsk~inLsEDIfaG~N~~lRGG~I~h~EYiQ~GKGRD 578 (1072)
++...|-...|+-... .+..+.-|+-=++.|.-...=||..- -.++||.--|+...-+|-++.+..=..+- |
T Consensus 286 ~e~~~f~~~i~~g~~~-~~~~~~~Gs~~~iRR~al~~iGGf~~----~~vtED~~l~~rL~~~G~~~~y~~~~~~~-g-- 357 (713)
T TIGR03030 286 NENELFYGLIQDGNDF-WNAAFFCGSAAVLRREALDEIGGIAG----ETVTEDAETALKLHRRGWNSAYLDRPLIA-G-- 357 (713)
T ss_pred hHHHHHHHHHHHHHhh-hCCeeecCceeEEEHHHHHHcCCCCC----CCcCcHHHHHHHHHHcCCeEEEecccccc-c--
Confidence 2222333333443322 34445557777777777777788863 34799999999988899998887644441 1
Q ss_pred cCccccccchh---hccCcccccc
Q 001473 579 MGMNQLSLSEA---RVAGVNGEQT 599 (1072)
Q Consensus 579 vG~~qI~~Fea---KIa~GnGEQ~ 599 (1072)
..=.++..|-. .-+.||-+..
T Consensus 358 ~~p~sl~~~~~Qr~RWa~G~~qi~ 381 (713)
T TIGR03030 358 LAPETLSGHIGQRIRWAQGMMQIF 381 (713)
T ss_pred cCCCCHHHHHHHHHHHhcChHHHH
Confidence 22234433332 3466665543
No 19
>PF11457 DUF3021: Protein of unknown function (DUF3021); InterPro: IPR021560 This is a bacterial family of uncharacterised proteins.
Probab=28.30 E-value=5.6e+02 Score=25.29 Aligned_cols=32 Identities=28% Similarity=0.673 Sum_probs=24.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhh-hcCcc
Q 001473 1001 GLWDSVKELARAYEYIMGLLLFAPIAILS-WFPFV 1034 (1072)
Q Consensus 1001 ~~w~~V~~LAr~yD~~~G~iif~Pia~LS-wfPfv 1034 (1072)
.-|...+ +-.-+++...+++.|++.+. |+|.-
T Consensus 67 e~~s~~~--~~iiHf~~~~~~~~~~~~~~gW~~~~ 99 (136)
T PF11457_consen 67 ERWSLLK--QTIIHFIITYAIFLILAYLLGWFPLS 99 (136)
T ss_pred cchhHHH--HHHHHHHHHHHHHHHHHHHhCCcchh
Confidence 3355444 34778899999999999997 99985
No 20
>KOG1373 consensus Transport protein Sec61, alpha subunit [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=27.55 E-value=2.4e+02 Score=34.04 Aligned_cols=98 Identities=20% Similarity=0.265 Sum_probs=69.7
Q ss_pred CCCchHHHHhhhHHHHHHHHHHhHHHHHHHHHHHHHH--HHHHHHHHHHhhhcceeEEEEeceEEeEeecccccccceee
Q 001473 663 HQSMALEEALATQSVFQLGLLLVLPMVMEIGLEKGFC--SALCDFIIMQLQLASVFFAFQLGTKVHYFGKTILHGSCKYR 740 (1072)
Q Consensus 663 ~~~~~l~~~l~~q~i~qlg~l~~lPm~~~~~lE~G~~--~A~~~~~~~~l~l~~~F~~F~~gt~~h~~~~~il~GGAkY~ 740 (1072)
.+.+++....--.-++|+.+-..+-+.+.+++++|.- ..++-|+..-+.=+-+.-.|+-.|.
T Consensus 140 G~p~dLg~~~clLii~QL~~Agiiv~lLdEllqKGyGlgSGislfiatnice~ivwkaFsptti---------------- 203 (476)
T KOG1373|consen 140 GSPSDLGVGICLLIILQLFFAGIIVILLDELLQKGYGLGSGISLFIATNICESIVWKAFSPTTI---------------- 203 (476)
T ss_pred CChhhcchhHHHHHHHHHHHhhHHHHHHHHHHHhccCcCcchhhhhHHHHHHHHHHHhcCceEE----------------
Confidence 3345566666667889999999999999999999864 6667676666666667777776553
Q ss_pred ecCCc-------------eEEeeechhhhhhhhhhhhHHHHHHHHHHHH
Q 001473 741 ATGRG-------------FVVYHAKFSENYRQYSRSHFVKGLELVILLV 776 (1072)
Q Consensus 741 aTGRG-------------Fvv~h~~F~~~Y~~Ya~Shf~~g~el~~lLi 776 (1072)
-|||| .+++|.+|..+|.-|-|...=-=+.++.-++
T Consensus 204 ~tGrg~efeGAvIalfhll~tr~~k~~al~eAF~RqnLPNl~nl~at~l 252 (476)
T KOG1373|consen 204 NTGRGTEFEGAVIALFHLLATRKDKVRALREAFYRQNLPNLTNLLATVL 252 (476)
T ss_pred ecCCCceechHHHHHHHHHHhcchHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 46666 4577888988888888876655444444333
No 21
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=27.02 E-value=47 Score=40.01 Aligned_cols=76 Identities=22% Similarity=0.402 Sum_probs=53.9
Q ss_pred hhhhcccccccccCCccccHHHHhhhhhhHHHHhhccCCCCCceEecccceeecc-cchhhhcccccchhhhHHHHHHhh
Q 001473 434 IIFTRGEALQTIDMNQDNYFEEAFKMRNVLEEFLKSTSGQREPTILGLREHIFTG-SVSSLAWFISNQETSFVTISQRIL 512 (1072)
Q Consensus 434 iIFtRGE~lQtIDmNQDnYlEEaLKmRNlL~Ef~~~~~g~~~~~IlG~REhIFTg-svssLa~f~a~qE~sFvTl~qR~L 512 (1072)
|.++||.. +.. .+..+|+|.+..- ==|+||=+.|| ++++-|.=..+.+.+|..|..++.
T Consensus 163 iP~~RG~~-rSr------------~~e~Il~ev~~Lv-------~~G~kEI~L~gqdv~aYG~D~~~~~~~l~~Ll~~l~ 222 (437)
T COG0621 163 IPYARGKE-RSR------------PPEDILKEVKRLV-------AQGVKEIVLTGQDVNAYGKDLGGGKPNLADLLRELS 222 (437)
T ss_pred eeccCCCc-cCC------------CHHHHHHHHHHHH-------HCCCeEEEEEEEehhhccccCCCCccCHHHHHHHHh
Confidence 56888875 222 3345667776532 22666666666 888877666544999999999998
Q ss_pred ccc--ceeeeeccCCcccc
Q 001473 513 VNP--LRVRFYYGHPDIFD 529 (1072)
Q Consensus 513 A~P--l~vR~HYGHPDvfd 529 (1072)
.-| -++|+||-||.-++
T Consensus 223 ~I~G~~riR~~~~~P~~~~ 241 (437)
T COG0621 223 KIPGIERIRFGSSHPLEFT 241 (437)
T ss_pred cCCCceEEEEecCCchhcC
Confidence 866 68999999995554
No 22
>PF14518 Haem_oxygenas_2: Iron-containing redox enzyme; PDB: 3BJD_B.
Probab=25.79 E-value=43 Score=31.54 Aligned_cols=75 Identities=27% Similarity=0.506 Sum_probs=45.5
Q ss_pred cCCCCCcCccchhhhhcccccccccCCcc------ccHHHHhhhhhhHHHHhhccCCCCCceEecccceeecccchhhhc
Q 001473 422 IGEGRPENQNHAIIFTRGEALQTIDMNQD------NYFEEAFKMRNVLEEFLKSTSGQREPTILGLREHIFTGSVSSLAW 495 (1072)
Q Consensus 422 lGEGKpeNQNhAiIFtRGE~lQtIDmNQD------nYlEEaLKmRNlL~Ef~~~~~g~~~~~IlG~REhIFTgsvssLa~ 495 (1072)
+|+|.|++ ||.-+|-| .++.++++.+ .+..|+....|..--+-... ...+.++|
T Consensus 9 ~G~G~~~~-~H~~Lf~~--~L~~~Gi~~~~~~~~~~~~~~~~~~~n~~~~~~~~~--~~~~~~lG--------------- 68 (106)
T PF14518_consen 9 MGNGDPER-SHPELFRR--FLRALGIDDEPGAYRDPYPPETLALINLFLALCLHR--SHYPEALG--------------- 68 (106)
T ss_dssp TTTT-GGG--HHHHHHH--HHHHTT-----TT-----HHHHHHHHHHHHHH--H---SSTHHHHH---------------
T ss_pred hCCCCccc-cHHHHHHH--HHHHcCCCCccccccccCCHHHHHHHHHHHHhcccc--hhHHHHHH---------------
Confidence 68999884 99999977 7888888876 67789999888776664321 12244444
Q ss_pred ccccchhhhHHHHHHhhcccce
Q 001473 496 FISNQETSFVTISQRILVNPLR 517 (1072)
Q Consensus 496 f~a~qE~sFvTl~qR~LA~Pl~ 517 (1072)
++.+-|.+.-...+++..- ++
T Consensus 69 ~~~~~E~~~~~~~~~~~~~-l~ 89 (106)
T PF14518_consen 69 ALLATESSVPQIYRRLIKG-LR 89 (106)
T ss_dssp HHHHHHTHHHHHHHHHHHH-HH
T ss_pred HHHHHhhcChHHHHHHHHH-HH
Confidence 3457888888887766543 55
No 23
>PF10569 Thiol-ester_cl: Alpha-macro-globulin thiol-ester bond-forming region; InterPro: IPR019565 This entry contains serum complement C3 and C4 precursors and alpha-macrogrobulins. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ]. This short highly conserved region of proteinase-binding alpha-macro-globulins contains the cysteine and a glutamine of a thiol-ester bond that is cleaved at the moment of proteinase binding, and mediates the covalent binding of the alpha-macro-globulin to the proteinase. The GCGEQ motif is highly conserved. ; PDB: 2B39_B 2PN5_A 4ACQ_C 1HZF_A 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=25.41 E-value=25 Score=27.84 Aligned_cols=11 Identities=45% Similarity=0.311 Sum_probs=8.2
Q ss_pred cCccccccchh
Q 001473 592 AGVNGEQTFSR 602 (1072)
Q Consensus 592 a~GnGEQ~LSR 602 (1072)
-.|+|||++|+
T Consensus 9 P~GCgEQtm~~ 19 (31)
T PF10569_consen 9 PYGCGEQTMSS 19 (31)
T ss_dssp --SSTTHHHHH
T ss_pred CCCcHHHHHHH
Confidence 46999999987
No 24
>PF07059 DUF1336: Protein of unknown function (DUF1336); InterPro: IPR009769 This entry represents the C terminus (approximately 250 residues) of a number of hypothetical plant proteins of unknown function.
Probab=23.56 E-value=46 Score=36.70 Aligned_cols=28 Identities=18% Similarity=0.403 Sum_probs=23.9
Q ss_pred eEEeecCCCCcccCCCCCcCccchhhhhc
Q 001473 410 IYRIKLPGPPTVIGEGRPENQNHAIIFTR 438 (1072)
Q Consensus 410 iYRIkLPG~~pilGEGKpeNQNhAiIFtR 438 (1072)
+--+++||-+|.+. |.++.++|+++++.
T Consensus 68 IVNlqvP~~p~~~f-~~~~~~~~s~V~Yf 95 (227)
T PF07059_consen 68 IVNLQVPGYPPSMF-GEIDGPGYSLVLYF 95 (227)
T ss_pred EEEEEccCCccccc-cccccCCceEEEEE
Confidence 44589999888888 99999999999874
No 25
>PF05073 Baculo_p24: Baculovirus P24 capsid protein; InterPro: IPR007765 The Culex nigripalpus NPV (Culex nigripalpus nucleopolyhedrovirus) protein p24 is associated with nucleocapsids of budded and polyhedra-derived virions [, ].; GO: 0019028 viral capsid
Probab=23.07 E-value=4.2e+02 Score=28.94 Aligned_cols=66 Identities=15% Similarity=0.166 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHhcCCCchhhH-----HHHHHHHHHHHhhcCcccceeecCCchhHHHHHHHHHHHHhccCCC
Q 001473 29 ECYETLREIIYGLLEDETDRNV-----VKQICYNVDISIQQHRFLNEFRMAGMPSLCEKLEKFVKLLLSKYED 96 (1072)
Q Consensus 29 e~y~s~~~il~~l~~~~~~~~~-----v~~i~~~i~~~i~~~~~~~~f~~~~Lp~l~~~~~~l~~~l~~~~~~ 96 (1072)
--|.++|+++..|+.|+..+-+ |..-...|++++.++.-...-.-+..+ .+...++.+.|......
T Consensus 86 ~~Y~~LKqLi~DLl~G~Q~~~~dpL~eIK~qLc~iqe~l~~~~~~~~~~~~~~~--~~~~~~l~~~l~se~~~ 156 (182)
T PF05073_consen 86 PEYYTLKQLIRDLLVGAQSEIVDPLCEIKTQLCTIQECLNENNSTLNSHANANS--NSWIRELRDILRSENAS 156 (182)
T ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHhccccccccccCccc--chhHHHHHHHHHhhhhH
Confidence 5699999999999999765532 223344577777776544331111122 25555555666654443
No 26
>PRK10547 chemotaxis protein CheA; Provisional
Probab=21.92 E-value=3.1e+02 Score=35.03 Aligned_cols=88 Identities=13% Similarity=0.141 Sum_probs=61.7
Q ss_pred CcchhhHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHhhcCcccceeecCCchhHHHHHHHHHHHHhccCCCchhh
Q 001473 21 GYMHSAVIECYETLREIIYGLLEDETDRNVVKQICYNVDISIQQHRFLNEFRMAGMPSLCEKLEKFVKLLLSKYEDVDVY 100 (1072)
Q Consensus 21 ~y~~~av~e~y~s~~~il~~l~~~~~~~~~v~~i~~~i~~~i~~~~~~~~f~~~~Lp~l~~~~~~l~~~l~~~~~~~~~~ 100 (1072)
+|+.+| +|..+.+...|..|=.+..+...|+.||+.+...--...+ +.+..+-.+.-++++++..+.+..-. .
T Consensus 9 ~F~~Ea-~E~l~~le~~Ll~LE~~p~d~e~in~lFRa~HTiKG~a~~---~g~~~i~~l~H~~E~lld~vR~g~l~---~ 81 (670)
T PRK10547 9 TFFDEA-DELLADMEQHLLVLDPEAPDAEQLNAIFRAAHSIKGGAGT---FGFTVLQETTHLMENLLDEARRGEMQ---L 81 (670)
T ss_pred HHHHHH-HHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhhhHHhh---cCchHHHHHHHHHHHHHHHHHCCCCC---C
Confidence 345444 5666666777777666667888999999998765544443 57888999999999999999986555 2
Q ss_pred HHhHHHHHHHHHHHH
Q 001473 101 KSQIINFLQDIMKII 115 (1072)
Q Consensus 101 ~~~vv~~l~~l~e~~ 115 (1072)
...++..+.+-.+.+
T Consensus 82 ~~~~~dlll~~~D~l 96 (670)
T PRK10547 82 NTDIINLFLETKDIM 96 (670)
T ss_pred CHHHHHHHHHHHHHH
Confidence 335566555555444
No 27
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=21.15 E-value=33 Score=41.89 Aligned_cols=26 Identities=12% Similarity=-0.038 Sum_probs=23.8
Q ss_pred ccchhhhcccccccccceeeeEeeee
Q 001473 547 NYGADIYAGMNSTLRGGYITHHEYIQ 572 (1072)
Q Consensus 547 nLsEDIfaG~N~~lRGG~I~h~EYiQ 572 (1072)
+|.||+--|+....+|.++.++.+--
T Consensus 260 sLTED~dLglRL~~~G~rv~y~p~ai 285 (504)
T PRK14716 260 SLTEDYDIGLRLKRAGFRQIFVRVRA 285 (504)
T ss_pred CcchHHHHHHHHHHCCCEEEEecccc
Confidence 79999999999999999999987753
No 28
>KOG2887 consensus Membrane protein involved in ER to Golgi transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.47 E-value=2e+02 Score=31.09 Aligned_cols=79 Identities=19% Similarity=0.149 Sum_probs=41.8
Q ss_pred EehhHHHHHHHHHHHHHHhhhccccccccchhhhH-HHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHhhhhhhhhhc
Q 001473 899 VYGLSWLVLVTTLLVLKMVSMGGRRSGAEFQLMFR-IKALVFLGFMSVMTVLFVVCGLTISDLFACMLAFLPTGISQIYN 977 (1072)
Q Consensus 899 Vy~lsw~viv~~~~il~~vs~~r~k~sa~~ql~~R-ik~llf~~~v~vii~l~~l~~lt~~Difa~~LafiptGwgl~~~ 977 (1072)
.+++-|..-=+..+.--.+-+|.+++-++.-...| +--+.|++++.+-+.....-|-++-.+..|+|-++.--| |+
T Consensus 76 kFal~~TlGnll~i~sf~fLmGP~~ql~~m~~p~Rl~~T~~~l~~~~~Tly~al~~ks~iLtllf~ilq~laliw---Ys 152 (175)
T KOG2887|consen 76 KFALLYTLGNLLAIGSFAFLMGPVSQLKHMFSPERLPATLSYLATMVLTLYVALWLKSKILTLLFCILQVLALIW---YS 152 (175)
T ss_pred eeehhHHHHHHHHHHHHHHHHhHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH
Confidence 46666666544444444555666544333333345 444445444444333333444466667777777666443 66
Q ss_pred ccc
Q 001473 978 LGY 980 (1072)
Q Consensus 978 ~~y 980 (1072)
++|
T Consensus 153 lSy 155 (175)
T KOG2887|consen 153 LSY 155 (175)
T ss_pred HHh
Confidence 777
Done!