Query 001473
Match_columns 1072
No_of_seqs 195 out of 303
Neff 3.9
Searched_HMMs 29240
Date Tue Mar 26 16:37:52 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001473.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_774-778//hhsearch_pdb/001473hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hg6_A Cellulose synthase subu 1.0 1 1 31.8 1.0 136 424-573 224-365 (802)
2 2z86_A Chondroitin synthase; G 1.0 1 1 18.4 -0.4 20 201-220 86-105 (625)
3 3fgr_B Putative phospholipase 1.0 1 1 17.7 0.5 15 520-534 328-342 (357)
4 3fbx_A Putative phospholipase 1.0 1 1 15.9 0.7 15 520-534 530-544 (559)
5 1l6x_B Minimized B-domain of p 1.0 1 1 15.6 -0.8 24 445-468 1-24 (34)
6 2zpa_A Uncharacterized protein 1.0 1 1 15.5 -0.9 10 373-382 307-316 (671)
7 4hkr_A Calcium release-activat 1.0 1 1 15.1 4.4 37 1003-1039 108-145 (214)
8 1zda_A Mini protein A domain, 1.0 1 1 14.9 -0.7 26 443-468 4-29 (38)
9 3fke_A Polymerase cofactor VP3 1.0 1 1 14.7 -7.6 19 73-91 18-36 (129)
10 2lai_A Avirulence protein ATR1 1.0 1 1 14.6 -2.1 12 237-248 58-69 (101)
No 1
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=1.00 E-value=1 Score=31.76 Aligned_cols=136 Identities=13% Similarity=0.130 Sum_probs=81.7
Q ss_pred CCCCCCCCCHHHHHCCCCCCCCCCCCCCCH-HHHHHHHHHHHHHHHCCCCCCCCEEECCCCEEECCC-----CHHHHCCC
Q ss_conf 898867421122102322000147751208-998623126999732169999853840321010266-----21010000
Q 001473 424 EGRPENQNHAIIFTRGEALQTIDMNQDNYF-EEAFKMRNVLEEFLKSTSGQREPTILGLREHIFTGS-----VSSLAWFI 497 (1072)
Q Consensus 424 EGKpeNQNhAiIFtRGE~lQtIDmNQDnYl-EEaLKmRNlL~EF~~~~~g~~~~tIlG~REhIFTgs-----vssLa~f~ 497 (1072)
.||+.|-|+++-.++||++-.+|..- .+ .++++ .+++.+++++ .+.+++.+-.+..++ .+......
T Consensus 224 ~GKa~alN~gl~~a~gd~Il~lDaD~--~~~pd~L~--~lv~~~~~dp----~v~~V~~~~~~~~~~~~~~~~~~~~~~~ 295 (802)
T 4hg6_A 224 HAKAGNMSAALERLKGELVVVFDADH--VPSRDFLA--RTVGYFVEDP----DLFLVQTPHFFINPDPIQRNLALGDRCP 295 (802)
T ss_dssp SHHHHHHHHHHHHCCCSEEEECCTTE--EECTTHHH--HHHHHHHHSS----SCCEEECCCCBSSCCHHHHHHTCCTTSC
T ss_pred CCCHHHHHHHHHHCCCCEEEEECCCC--CCCHHHHH--HHHHHHHCCC----CEEEEECCEEEECCCHHHHHHHHHHHHH
T ss_conf 76368999999965999999999998--81858999--9999984099----8599965679767855765444776516
Q ss_pred CCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCEEEEEEEEEE
Q ss_conf 0120256777777520665011113698643210102478633332110220212002122235620236753641
Q 001473 498 SNQETSFVTISQRILVNPLRVRFYYGHPDIFDRIFHITRGGIGKASRVINYGADIYAGMNSTLRGGYITHHEYIQV 573 (1072)
Q Consensus 498 a~qE~sFvTl~qRvLA~Pl~vR~HYGHPDvfd~~F~~TRGGvSKAsk~inLsEDIFaG~N~tlRGG~I~h~EYiQ~ 573 (1072)
.....|-...++.... .....--|+-=++.|-....-||.... .++||..-+.....+|.++.++.-..|
T Consensus 296 -~~~~~~~~~~~~~~~~-~~~~~~~G~~~~~Rr~al~~vGgf~~~----~~~ED~~l~~rl~~~G~ri~~~~~~~~ 365 (802)
T 4hg6_A 296 -PENEMFYGKIHRGLDR-WGGAFFCGSAAVLRRRALDEAGGFAGE----TITEDAETALEIHSRGWKSLYIDRAMI 365 (802)
T ss_dssp -CTTHHHHHTHHHHHHH-TTCCCCCSSSEEEEHHHHHHHTTCCCS----SSSHHHHHHHHHHTTTCCEEECCCCCE
T ss_pred -HHHHHHHHHHHHHHHH-CCCCEECCCCHHHHHHHHHHCCCCCCC----CCCHHHHHHHHHHHCCCEEEEECCCEE
T ss_conf -7899998888754764-388454266403249999970886788----803099999999976995999368879
No 2
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=1.00 E-value=1 Score=18.39 Aligned_cols=20 Identities=20% Similarity=0.278 Sum_probs=14.6
Q ss_pred CCCCCCCCCEEEECCCCCCC
Q ss_conf 82324443036532433421
Q 001473 201 APKVRDMISFSVLTPYYRED 220 (1072)
Q Consensus 201 a~~V~~M~sfSVlTPyY~E~ 220 (1072)
+++...||..||++|.|+|.
T Consensus 86 ~~~~~~~p~vsviIp~~n~~ 105 (625)
T 2z86_A 86 PRKQLIIDGLSIVIPTYNRA 105 (625)
T ss_dssp ----CCCCCEEEEEEESSCH
T ss_pred CCCCCCCCCEEEEEECCCCH
T ss_conf 76534698279999038857
No 3
>3fgr_B Putative phospholipase B-like 2 40 kDa form; alpha beta, glycosylated, disulphide bonds, N-terminal nucle hydrolase fold, two chain form; HET: NAG; 1.80A {Mus musculus} PDB: 3fgt_B*
Probab=1.00 E-value=1 Score=17.68 Aligned_cols=15 Identities=20% Similarity=0.217 Sum_probs=12.1
Q ss_pred EECCCCCCCCCCCCC
Q ss_conf 113698643210102
Q 001473 520 FYYGHPDIFDRIFHI 534 (1072)
Q Consensus 520 ~HYGHPDvfd~~F~~ 534 (1072)
.|+||||+||=-|..
T Consensus 328 ~H~G~Pd~~~F~~v~ 342 (357)
T 3fgr_B 328 LHMGQPDLWMFSPIR 342 (357)
T ss_dssp CCTTCCSEECCCCEE
T ss_pred CCCCCCCCCCCCCEE
T ss_conf 969988672777789
No 4
>3fbx_A Putative phospholipase B-like 2; alpha beta, glycosylated, disulphide bonds, oxidized cystein glycoprotein, hydrolase, lipid degradation, lysosome; HET: NAG PG4 PGE; 2.40A {Mus musculus} PDB: 3fgw_A*
Probab=1.00 E-value=1 Score=15.87 Aligned_cols=15 Identities=20% Similarity=0.217 Sum_probs=12.1
Q ss_pred EECCCCCCCCCCCCC
Q ss_conf 113698643210102
Q 001473 520 FYYGHPDIFDRIFHI 534 (1072)
Q Consensus 520 ~HYGHPDvfd~~F~~ 534 (1072)
.|+||||+||=-|..
T Consensus 530 ~H~G~Pd~~nF~~v~ 544 (559)
T 3fbx_A 530 LHMGQPDLWMFSPIR 544 (559)
T ss_dssp CCTTCCSEECCCCEE
T ss_pred CCCCCCCCCCCCCEE
T ss_conf 979999672778789
No 5
>1l6x_B Minimized B-domain of protein A Z34C; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: k.13.1.1 PDB: 1oqo_C* 1oqx_C* 1zdc_A 1zdd_A
Probab=1.00 E-value=1 Score=15.61 Aligned_cols=24 Identities=29% Similarity=0.279 Sum_probs=17.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 147751208998623126999732
Q 001473 445 IDMNQDNYFEEAFKMRNVLEEFLK 468 (1072)
Q Consensus 445 IDmNQDnYlEEaLKmRNlL~EF~~ 468 (1072)
.|+-|.|-|=|.|+|.||-+|=..
T Consensus 1 ~~~~qQnaFYevLh~~nLtEeQrn 24 (34)
T 1l6x_B 1 FNMQCQRRFYEALHDPNLNEEQRN 24 (34)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHH
T ss_pred CCHHHHHHHHHHHCCCCCCHHHHH
T ss_conf 978999999999918987899997
No 6
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=1.00 E-value=1 Score=15.45 Aligned_cols=10 Identities=30% Similarity=0.388 Sum_probs=4.2
Q ss_pred CCCEEEEECC
Q ss_conf 9829988301
Q 001473 373 PSLRVAYLDE 382 (1072)
Q Consensus 373 P~LrVAYide 382 (1072)
|.++...++|
T Consensus 307 ~~~~~~~L~~ 316 (671)
T 2zpa_A 307 PHLHRFELQQ 316 (671)
T ss_dssp TTCEEEECCS
T ss_pred CCCCEEECCC
T ss_conf 9776798157
No 7
>4hkr_A Calcium release-activated calcium channel protein; ORAI1, eukaryotic membrane protein, membran protein, ION channel, STIM, membrane; 3.35A {Drosophila melanogaster} PDB: 4hks_A
Probab=1.00 E-value=1 Score=15.15 Aligned_cols=37 Identities=35% Similarity=0.554 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHCCCCCHHHH
Q ss_conf 58999999999998789989-99998620686112144
Q 001473 1003 WDSVKELARAYEYIMGLLLF-APIAILSWFPFVSKFQT 1039 (1072)
Q Consensus 1003 w~~V~~LAr~yD~~mG~iif-~Pia~LSw~Pf~s~~QT 1039 (1072)
+...-++||.+-.+.|+++| +-|+++.|..|...-++
T Consensus 108 ~~~yIE~AW~fST~lGi~LFL~evall~WVKF~~~~~~ 145 (214)
T 4hkr_A 108 LHWYIETAWAFSTLLGLILFLLEIAILCWVKFYDLSRR 145 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCH
T ss_conf 99999999999989989999999998505775058737
No 8
>1zda_A Mini protein A domain, Z38; IGG binding domain, protein A mimic; NMR {Synthetic construct} SCOP: k.13.1.1 PDB: 1zdb_A
Probab=1.00 E-value=1 Score=14.89 Aligned_cols=26 Identities=35% Similarity=0.377 Sum_probs=19.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 00147751208998623126999732
Q 001473 443 QTIDMNQDNYFEEAFKMRNVLEEFLK 468 (1072)
Q Consensus 443 QtIDmNQDnYlEEaLKmRNlL~EF~~ 468 (1072)
+-+++-|.|-|=|.|+|.||-+|=..
T Consensus 4 ~~~~~~QQnaFYevLh~~nLtEeQrn 29 (38)
T 1zda_A 4 QSFNMQQQRRFYEALHDPNLNEEQRN 29 (38)
T ss_dssp TTTTTTSSHHHHHHHSCSSSCTTHHH
T ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHH
T ss_conf 41128999999999907887889997
No 9
>3fke_A Polymerase cofactor VP35; RNA binding domain, coiled coil, interferon antiviral system evasion, RNA replication, RNA-binding; 1.40A {Zaire ebolavirus - mayinga} PDB: 3l25_A 3l26_A 3l28_A 3l27_A 3l29_A 3l2a_A
Probab=1.00 E-value=1 Score=14.74 Aligned_cols=19 Identities=11% Similarity=0.392 Sum_probs=8.5
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q ss_conf 3780338999999999975
Q 001473 73 MAGMPSLCEKLEKFVKLLL 91 (1072)
Q Consensus 73 ~~~Lp~l~~~~~~l~~~L~ 91 (1072)
.+.||.-...|-+|++.+-
T Consensus 18 ~~hLpG~~TaFH~Lvqvi~ 36 (129)
T 3fke_A 18 YDHLPGFGTAFHQLVQVIC 36 (129)
T ss_dssp HTTSSSSSCHHHHHHHHHH
T ss_pred HHHCCCCCCHHHHHHHHHH
T ss_conf 9708999845999999999
No 10
>2lai_A Avirulence protein ATR13; nucleolar localization, signaling protein; NMR {Hyaloperonospora parasitica}
Probab=1.00 E-value=1 Score=14.55 Aligned_cols=12 Identities=50% Similarity=0.902 Sum_probs=0.0
Q ss_pred CHHHHHHHHCCH
Q ss_conf 088998852921
Q 001473 237 STLFYLQKIYPD 248 (1072)
Q Consensus 237 siL~YL~~i~Pd 248 (1072)
++++||+++||+
T Consensus 58 sv~eylkk~ypg 69 (101)
T 2lai_A 58 SVMEYLKKTYPG 69 (101)
T ss_dssp CCCCCTTTSCCS
T ss_pred HHHHHHHHHCCC
T ss_conf 999999872799
Done!