Query 001473
Match_columns 1072
No_of_seqs 195 out of 303
Neff 3.9
Searched_HMMs 13730
Date Tue Mar 26 16:43:55 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001473.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_774-778//hhsearch_scop/001473hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1xhba2 c.68.1.17 (A:95-422) P 5.9 57 0.0041 7.7 2.1 34 424-457 93-129 (328)
2 d1dfma_ c.52.1.5 (A:) Restrict 4.4 82 0.006 6.5 3.2 54 426-484 120-173 (223)
3 d2p62a1 e.67.1.1 (A:1-241) Hyp 2.9 1.4E+02 0.01 4.9 1.9 109 414-530 32-149 (241)
4 d1r9wa_ d.89.1.2 (A:) Replicat 2.7 1.5E+02 0.011 4.6 0.2 22 548-573 41-62 (145)
5 d2fomb1 b.47.1.3 (B:18-167) NS 2.5 1.2E+02 0.0088 5.3 -0.7 22 520-541 21-42 (150)
6 d1omza_ c.68.1.15 (A:) Alpha-1 2.5 1.6E+02 0.012 4.3 3.4 57 424-487 67-123 (265)
7 d1qg8a_ c.68.1.1 (A:) Spore co 2.3 1.8E+02 0.013 4.1 0.1 32 208-239 1-34 (255)
8 d2fp7b1 b.47.1.3 (B:19-170) NS 2.3 1.4E+02 0.0099 4.9 -0.7 16 522-537 22-37 (152)
9 d1sq5a_ c.37.1.6 (A:) Pantothe 2.2 1.9E+02 0.014 3.9 5.1 57 452-527 57-113 (308)
10 d1w4ta1 d.3.1.5 (A:1-277) Aryl 2.2 1.9E+02 0.014 3.9 0.6 88 520-607 47-157 (277)
No 1
>d1xhba2 c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=5.93 E-value=57 Score=7.69 Aligned_cols=34 Identities=15% Similarity=0.330 Sum_probs=21.9
Q ss_pred CCCCCCCCCHHHHHCCCCCCCCCCC---CCCCHHHHH
Q ss_conf 8988674211221023220001477---512089986
Q 001473 424 EGRPENQNHAIIFTRGEALQTIDMN---QDNYFEEAF 457 (1072)
Q Consensus 424 EGKpeNQNhAiIFtRGE~lQtIDmN---QDnYlEEaL 457 (1072)
.|.+...|.++--++||++-.+|.- ..+++|+.+
T Consensus 93 ~G~~~a~N~Gi~~a~gd~i~flD~D~~~~p~~l~~l~ 129 (328)
T d1xhba2 93 SGLIRARLKGAAVSRGQVITFLDAHCECTAGWLEPLL 129 (328)
T ss_dssp CCHHHHHHHHHHHCCSSEEEEEESSEEECTTCHHHHH
T ss_pred CCCHHHHHHHHHHHHCCEEEECCCCCCCCHHHHHHHH
T ss_conf 3216887899986311002201765566736999999
No 2
>d1dfma_ c.52.1.5 (A:) Restriction endonuclease BglII {Bacillus subtilis [TaxId: 1423]}
Probab=4.43 E-value=82 Score=6.53 Aligned_cols=54 Identities=30% Similarity=0.319 Sum_probs=41.6
Q ss_pred CCCCCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCE
Q ss_conf 88674211221023220001477512089986231269997321699998538403210
Q 001473 426 RPENQNHAIIFTRGEALQTIDMNQDNYFEEAFKMRNVLEEFLKSTSGQREPTILGLREH 484 (1072)
Q Consensus 426 KpeNQNhAiIFtRGE~lQtIDmNQDnYlEEaLKmRNlL~EF~~~~~g~~~~tIlG~REh 484 (1072)
+.++-|-+||-|.| .+-+-.|-|+|+|.+---=+-|.+..-.+ -|++|||.-|-
T Consensus 120 ~~~~t~~~Ii~tk~--~~~~asn~~~y~e~~~~~L~~l~~~~v~d---vPi~~~gi~e~ 173 (223)
T d1dfma_ 120 DEEGMKVAIIITKG--HMFPASNSSLYYEQAQNQLNSLAEYNVFD---VPIRLVGLIED 173 (223)
T ss_dssp SSSBCCEEEEEEEC--TTSCCSTTBCCHHHHHHHHHHHHHTTCCC---SCEEEEEEECC
T ss_pred CCCCCCEEEEEECC--CCCCCCCCHHHHHHHHHHHHHHCCCCCCC---CCEEEEEECCC
T ss_conf 02466569999624--34203461479999999998627363234---55555660572
No 3
>d2p62a1 e.67.1.1 (A:1-241) Hypothetical protein PH0156 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=2.90 E-value=1.4e+02 Score=4.89 Aligned_cols=109 Identities=16% Similarity=0.238 Sum_probs=68.6
Q ss_pred ECCCCCCCCCCCCCCCCCCHHH-HHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCEEECCCCHH
Q ss_conf 3699995357898867421122-102322000147751208998623126999732169999853840321010266210
Q 001473 414 KLPGPPTVIGEGRPENQNHAII-FTRGEALQTIDMNQDNYFEEAFKMRNVLEEFLKSTSGQREPTILGLREHIFTGSVSS 492 (1072)
Q Consensus 414 kLPG~~piLGEGKpeNQNhAiI-FtRGE~lQtIDmNQDnYlEEaLKmRNlL~EF~~~~~g~~~~tIlG~REhIFTgsvss 492 (1072)
++|- +-+++|+++|--||++. =.-|-++-.|..+-..-.--+|+ |.|.--+- +.-.|.++|+---|=.++- +
T Consensus 32 ~~~~-~~~~ie~~fer~~~~l~le~d~v~LaVi~seGns~v~rnL~--n~l~Am~v---~~~~v~~iGvA~DvDe~~e-v 104 (241)
T d2p62a1 32 KLTP-EFPIGKWGFRIGEHPLVLEKDNIALVIIHAEGKQRIPKVLK--SVLDSVKL---GLLNVEEVYVVRDVDEGND-V 104 (241)
T ss_dssp SCCC-CCCHHHHCCCTTCCCEEEEETTEEEEEECSCCTTTHHHHHH--HHHHHHHH---TCCCEEEEEEEEESSSSSC-H
T ss_pred CCCC-CCCHHHHHCCCCCCCCEEECCCEEEEEEECCCCCHHHHHHH--HHHHHHHH---HCCCHHEEEEEEECCCCHH-H
T ss_conf 4897-66114432355663313433885899984788413778999--99999997---4446111688874376078-8
Q ss_pred HHCCCC-------CCHHHHHHHHHHHHCCCCEEE-EECCCCCCCCC
Q ss_conf 100000-------120256777777520665011-11369864321
Q 001473 493 LAWFIS-------NQETSFVTISQRILVNPLRVR-FYYGHPDIFDR 530 (1072)
Q Consensus 493 La~f~a-------~qE~sFvTl~qRvLA~Pl~vR-~HYGHPDvfd~ 530 (1072)
++|..+ ..+..|- +.+-+-.-|+.+- .+.++|++.-+
T Consensus 105 ~~~~~s~l~~~e~~~~~g~~-~~~~~~i~pl~Ig~~~~~~p~~~~K 149 (241)
T d2p62a1 105 FEWVLSFLREREVRVDNGAI-VTEGVKIYPYGMGNLTLNEPFVKEK 149 (241)
T ss_dssp HHHHHTTCTTCCCEEETTEE-EETTEEEEEEEECCSCCCCTTBCCC
T ss_pred HHHHHHHHHCCCCCCCCCEE-EECCEEEEEEEECCCCCCCCHHHHC
T ss_conf 99999986236754467728-9746699997633646686146542
No 4
>d1r9wa_ d.89.1.2 (A:) Replication initiation protein E1 {Human papillomavirus type 18 [TaxId: 333761]}
Probab=2.72 E-value=1.5e+02 Score=4.64 Aligned_cols=22 Identities=14% Similarity=0.323 Sum_probs=9.8
Q ss_pred CCHHHHCCCCCCCCCCEEEEEEEEEE
Q ss_conf 20212002122235620236753641
Q 001473 548 YGADIYAGMNSTLRGGYITHHEYIQV 573 (1072)
Q Consensus 548 LsEDIFaG~N~tlRGG~I~h~EYiQ~ 573 (1072)
++||++.+...+|+ .||+|+|+
T Consensus 41 v~~~l~ea~k~lLq----~hc~y~~~ 62 (145)
T d1r9wa_ 41 VNPTIAEGFKTLIQ----PFILYAHI 62 (145)
T ss_dssp ECHHHHHTHHHHHG----GGEEEEEE
T ss_pred ECHHHHHHHHHHHH----HHEEEEEE
T ss_conf 08899999999977----44127888
No 5
>d2fomb1 b.47.1.3 (B:18-167) NS3 protease {Dengue virus type 2 [TaxId: 11060]}
Probab=2.51 E-value=1.2e+02 Score=5.31 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=16.8
Q ss_pred EECCCCCCCCCCCCCCCCCCCC
Q ss_conf 1136986432101024786333
Q 001473 520 FYYGHPDIFDRIFHITRGGIGK 541 (1072)
Q Consensus 520 ~HYGHPDvfd~~F~~TRGGvSK 541 (1072)
--|+|--||..+||.|||..-.
T Consensus 21 VGv~~~GVfHTmWHVTrGa~l~ 42 (150)
T d2fomb1 21 AGVYKEGTFHTMWHVTRGAVLM 42 (150)
T ss_dssp EEEEETTEEEEEHHHHTTCCEE
T ss_pred EEEEECCEEEEEEEECCCCEEE
T ss_conf 6985589998745663772289
No 6
>d1omza_ c.68.1.15 (A:) Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=2.51 E-value=1.6e+02 Score=4.34 Aligned_cols=57 Identities=7% Similarity=-0.006 Sum_probs=37.1
Q ss_pred CCCCCCCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCEEEC
Q ss_conf 8988674211221023220001477512089986231269997321699998538403210102
Q 001473 424 EGRPENQNHAIIFTRGEALQTIDMNQDNYFEEAFKMRNVLEEFLKSTSGQREPTILGLREHIFT 487 (1072)
Q Consensus 424 EGKpeNQNhAiIFtRGE~lQtIDmNQDnYlEEaLKmRNlL~EF~~~~~g~~~~tIlG~REhIFT 487 (1072)
.|+..+-|+|+-..+||++=.+|.. |=+-+++|+ .+++.++... ...+.|.+-....
T Consensus 67 ~g~~~a~n~~~~~a~ge~i~~lD~D-~~~~~~~l~--~l~~~~~~~~----~~~v~~~~~~~~~ 123 (265)
T d1omza_ 67 ANKMRNRLQVFPEVETNAVLMVDDD-TLISAQDLV--FAFSIWQQFP----DQIIGFVPRKHVS 123 (265)
T ss_dssp SCCGGGGGSCCTTCCSSEEEEECTT-EEECHHHHH--HHHHHHTTST----TSEEESCEEEEEE
T ss_pred CCCHHHHHHHHHHCCCCEEEEECCC-CCCCHHHHH--HHHHHHHHCC----CCCEECCCCCCCC
T ss_conf 8823454254886896789996765-577879999--9999998588----7422113320012
No 7
>d1qg8a_ c.68.1.1 (A:) Spore coat polysaccharide biosynthesis protein SpsA {Bacillus subtilis [TaxId: 1423]}
Probab=2.33 E-value=1.8e+02 Score=4.06 Aligned_cols=32 Identities=16% Similarity=0.220 Sum_probs=0.0
Q ss_pred CCEEEECCCCCCC--CCCCHHHHCCCCCCCCCHH
Q ss_conf 3036532433421--0247443202268973088
Q 001473 208 ISFSVLTPYYRED--VLYSVDELNNENEDGISTL 239 (1072)
Q Consensus 208 ~sfSVlTPyY~E~--VlyS~~eL~~e~edgvsiL 239 (1072)
|-.||++|.|+++ +.-+++.+.+++-+...++
T Consensus 1 P~vSiiip~yN~~~~l~~~l~Si~~Qt~~~~eii 34 (255)
T d1qg8a_ 1 PKVSVIMTSYNKSDYVAKSISSILSQTFSDFELF 34 (255)
T ss_dssp CCEEEEEEESSCTTTHHHHHHHHHTCSCCCEEEE
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 9799999627988999999999982889985999
No 8
>d2fp7b1 b.47.1.3 (B:19-170) NS3 protease {West nile virus [TaxId: 11082]}
Probab=2.26 E-value=1.4e+02 Score=4.91 Aligned_cols=16 Identities=25% Similarity=0.561 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCC
Q ss_conf 3698643210102478
Q 001473 522 YGHPDIFDRIFHITRG 537 (1072)
Q Consensus 522 YGHPDvfd~~F~~TRG 537 (1072)
|+|--||..+||.|||
T Consensus 22 v~~~GVfHTmWHVTrG 37 (152)
T d2fp7b1 22 VMVEGVFHTLWHTTKG 37 (152)
T ss_dssp EEETTEEEEEHHHHTT
T ss_pred EEECCEEEEEEEECCC
T ss_conf 8568999873455477
No 9
>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}
Probab=2.25 E-value=1.9e+02 Score=3.92 Aligned_cols=57 Identities=30% Similarity=0.550 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCEEECCCCHHHHCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf 0899862312699973216999985384032101026621010000012025677777752066501111369864
Q 001473 452 YFEEAFKMRNVLEEFLKSTSGQREPTILGLREHIFTGSVSSLAWFISNQETSFVTISQRILVNPLRVRFYYGHPDI 527 (1072)
Q Consensus 452 YlEEaLKmRNlL~EF~~~~~g~~~~tIlG~REhIFTgsvssLa~f~a~qE~sFvTl~qRvLA~Pl~vR~HYGHPDv 527 (1072)
|.+++.+.....+.|.... +.+.|-|+| .+|++|| -.+||...-+..|+. .+++|.+
T Consensus 57 ~~~~~~~~~~~~~~fl~~~-~~k~P~iIG-----IaG~sgS-------GKSTla~~L~~lL~~------~~~~~~v 113 (308)
T d1sq5a_ 57 YISSNLRRQAVLEQFLGTN-GQRIPYIIS-----IAGSVAV-------GKSTTARVLQALLSR------WPEHRRV 113 (308)
T ss_dssp HHHHHHHHHHHHHHHHTCC--CCCCEEEE-----EEECTTS-------SHHHHHHHHHHHHTT------STTCCCE
T ss_pred HHHHHHHHHHHHHHHHCCC-CCCCCEEEE-----EECCCCC-------CCCHHHHHHHHHHHH------HCCCCCE
T ss_conf 9999999999999985344-789988999-----9689999-------876899999999730------4689965
No 10
>d1w4ta1 d.3.1.5 (A:1-277) Arylamine N-acetyltransferase {Pseudomonas aeruginosa [TaxId: 287]}
Probab=2.23 E-value=1.9e+02 Score=3.88 Aligned_cols=88 Identities=16% Similarity=0.198 Sum_probs=0.0
Q ss_pred EECCCC------CCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCEE-------------EEEEE-EEECCCC--
Q ss_conf 113698------6432101024786333321102202120021222356202-------------36753-6414654--
Q 001473 520 FYYGHP------DIFDRIFHITRGGIGKASRVINYGADIYAGMNSTLRGGYI-------------THHEY-IQVGKGR-- 577 (1072)
Q Consensus 520 ~HYGHP------Dvfd~~F~~TRGGvSKAsk~inLsEDIFaG~N~tlRGG~I-------------~h~EY-iQ~GKGR-- 577 (1072)
.|+|+| ++|+|+-.--|||..=-..++=-.==-=-||++.+-+|+| +|.-- ++++.++
T Consensus 47 ~~~g~~i~ld~~~l~~kiV~~~rGGyC~E~N~Lf~~lL~~LGf~v~~~~arV~~~~~~~~~~~~~~H~~l~V~i~~~~yl 126 (277)
T d1w4ta1 47 VLLDRPIEIDADKVFAKVVEGSRGGYCFELNSLFARLLLALGYELELLVARVRWGLPDDAPLTQQSHLMLRLYLAEGEFL 126 (277)
T ss_dssp HHTTCCCCCSHHHHHHHHTTTTCCBCHHHHHHHHHHHHHHTTCEEEEEEEEECTTCCTTSCCCCEEEEEEEEEETTEEEE
T ss_pred HHCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCCCEEEEEEEECCCEEE
T ss_conf 32399877999999999986577723451569999999986980699889997368888888887418999998990699
Q ss_pred -CCCCCCCCCCHHHCCCCCCCCCCHHHHHHC
Q ss_conf -457632222111103755651010333510
Q 001473 578 -DMGMNQLSLSEARVAGVNGEQTFSRDVYRL 607 (1072)
Q Consensus 578 -DvGl~qI~~FeaKIa~GnGEQ~LSRdvyrL 607 (1072)
||||+.....+.=--.+..+|.--.+.||+
T Consensus 127 vDvGfG~~~~~~Pl~l~~~~~~~~~~~~~r~ 157 (277)
T d1w4ta1 127 VDVGFGSANPPRALPLPGDEADAGQVHCVRL 157 (277)
T ss_dssp ECSCSGGGCCSSCEESSCCTTCTTCSEEEEE
T ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCEEEEE
T ss_conf 8403677685646237887531367517999
Done!