Query 001474
Match_columns 1071
No_of_seqs 591 out of 3807
Neff 6.1
Searched_HMMs 29240
Date Tue Mar 26 17:02:09 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001474.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_774-778//hhsearch_pdb/001474hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1n11_A Ankyrin; clathrin, BAND 1.0 1 1 271.3 25.7 91 517-613 14-109 (437)
2 1n11_A Ankyrin; clathrin, BAND 1.0 1 1 270.2 29.0 121 674-805 260-380 (437)
3 3ljn_A Hypothetical protein; a 1.0 1 1 265.8 16.3 237 513-788 16-268 (364)
4 2fo1_E LIN-12 protein; beta-ba 1.0 1 1 262.8 17.8 223 515-788 123-370 (373)
5 3utm_A Tankyrase-1; tankyrase, 1.0 1 1 261.9 24.3 266 515-820 56-332 (351)
6 2xai_A ASB-9, ankyrin repeat a 1.0 1 1 260.4 19.5 231 517-805 3-241 (261)
7 1oy3_D Transcription factor in 1.0 1 1 259.4 19.7 254 513-809 5-265 (282)
8 1yyh_A HN1;, notch 1, ankyrin 1.0 1 1 257.2 22.0 222 513-787 6-246 (253)
9 2fo1_E LIN-12 protein; beta-ba 1.0 1 1 257.1 17.3 234 514-809 91-353 (373)
10 4g8k_A 2-5A-dependent ribonucl 1.0 1 1 256.9 25.5 232 516-804 24-275 (337)
No 1
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=1.00 E-value=1 Score=271.30 Aligned_cols=91 Identities=12% Similarity=0.107 Sum_probs=48.4
Q ss_pred CCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHH--
Q ss_conf 344979999829936899999889987777898899807899985399762156676310199995445799992655--
Q 001474 517 EAENCKWSCMFGEIEVPAEIVAGGVLRCHTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIPDVDVADNCGDITSE-- 594 (1071)
Q Consensus 517 ~~T~LH~Ac~fG~veVv~~LL~~Gv~vc~~~~d~~G~TPLhiAa~ng~~~seVv~fe~Ll~~Gadina~D~~G~TaL~-- 594 (1071)
+.||||+||..|+++++++|++.|++++ ..+..|.||||+||.+| +.+++ ++|+..|++++..+..|.||+|
T Consensus 14 g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~--~~~~~~~t~L~~A~~~g--~~~~v--~~Ll~~g~~~~~~~~~g~t~L~~A 87 (437)
T 1n11_A 14 GLTPLHVASFMGHLPIVKNLLQRGASPN--VSNVKVETPLHMAARAG--HTEVA--KYLLQNKAKVNAKAKDDQTPLHCA 87 (437)
T ss_dssp -CCHHHHHHHHTCHHHHHHHHHTTCCSC--CSSSCCCCHHHHHHHHT--CHHHH--HHHHHHTCCSSCCCTTSCCHHHHH
T ss_pred CCCHHHHHHHCCCHHHHHHHHHCCCCCC--CCCCCCCCHHHHHHHCC--CHHHH--HHHHHCCCCCCCCCCCCCCHHHHH
T ss_conf 9888999998789999999998699999--88889987999999819--79999--999958999998799999899999
Q ss_pred --HHHHHHHHHHCC-CCCCCCC
Q ss_conf --338999999702-8999999
Q 001474 595 --NLRMQFGKLLCL-TSVSTPN 613 (1071)
Q Consensus 595 --~~~~~ivkLL~~-ga~in~~ 613 (1071)
.++..++++|.. |++++..
T Consensus 88 ~~~g~~~~v~~Ll~~ga~~~~~ 109 (437)
T 1n11_A 88 ARIGHTNMVKLLLENNANPNLA 109 (437)
T ss_dssp HHHTCHHHHHHHHHHTCCTTCC
T ss_pred HHCCCHHHHHHHHHCCCCCCCC
T ss_conf 9879899999999679998877
No 2
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=1.00 E-value=1 Score=270.17 Aligned_cols=121 Identities=23% Similarity=0.230 Sum_probs=73.8
Q ss_pred HHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCC
Q ss_conf 99999949999972369994089999992999999999978999642369999778999982999999999983999999
Q 001474 674 LVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGA 753 (1071)
Q Consensus 674 Lv~~Lle~Gadin~~D~~G~TpLHlAA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~eiV~lLL~~GAdvn~ 753 (1071)
+++.|++.|++++..+..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.+|+.++|++|+++|++++.
T Consensus 260 ~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~ 339 (437)
T 1n11_A 260 MVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNA 339 (437)
T ss_dssp HHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTC
T ss_pred HHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCC
T ss_conf 99999966999998799999799999984999999999848756788799998899999986949999999966999998
Q ss_pred CCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHH
Q ss_conf 8899999999997999999729299999999829988654563348888908
Q 001474 754 LSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSAISLNKKDGDVA 805 (1071)
Q Consensus 754 ~~d~n~~D~~G~TPLhlAa~~G~~~iv~lLLe~g~~~~~adl~~~d~~G~ta 805 (1071)
+|..|.||||+|+..|+.+++++|+++| ++++.+|..|.++
T Consensus 340 ------~~~~g~t~L~~A~~~g~~~iv~~Ll~~g-----a~~~~~~~~g~t~ 380 (437)
T 1n11_A 340 ------KTKLGYSPLHQAAQQGHTDIVTLLLKNG-----ASPNEVSSDGTTP 380 (437)
T ss_dssp ------CCTTSCCHHHHHHHTTCHHHHHHHHHTT-----CCSCCCCSSSCCH
T ss_pred ------CCCCCCCHHHHHHHCCHHHHHHHHHHCC-----CCCCCCCCCCCCH
T ss_conf ------8999988999999878199999999776-----8998878998989
No 3
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=1.00 E-value=1 Score=265.79 Aligned_cols=237 Identities=12% Similarity=0.129 Sum_probs=194.9
Q ss_pred CCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCH
Q ss_conf 68553449799998299368999998899877778988998078999853997621566763101999954457999926
Q 001474 513 MSQQEAENCKWSCMFGEIEVPAEIVAGGVLRCHTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIPDVDVADNCGDIT 592 (1071)
Q Consensus 513 ~~~~~~T~LH~Ac~fG~veVv~~LL~~Gv~vc~~~~d~~G~TPLhiAa~ng~~~seVv~fe~Ll~~Gadina~D~~G~Ta 592 (1071)
.+..+.|+||+||..|+++++++||+.|++++ ..+..|.||||+||.+| +.+++ ++|+..|++++. ..|.||
T Consensus 16 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~--~~d~~g~t~L~~A~~~g--~~~~v--~~Ll~~g~~~~~--~~g~t~ 87 (364)
T 3ljn_A 16 SDDENMEKIHVAARKGQTDEVRRLIETGVSPT--IQNRFGCTALHLACKFG--CVDTA--KYLASVGEVHSL--WHGQKP 87 (364)
T ss_dssp CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCTT--CCCTTCCCHHHHHHHHC--CHHHH--HHHHHHCCCCCC--BTTBCH
T ss_pred CCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCC--CCCCCCCCHHHHHHHCC--CHHHH--HHHHHCCCCCCC--CCCCCH
T ss_conf 48899979999998099999999998698942--24899996999999859--89999--999977997545--689988
Q ss_pred HH----HHHHHHHHHHCC-----CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHC--CCCHHHHHHHH
Q ss_conf 55----338999999702-----89999999999803457889997642115898502889987515--98847899999
Q 001474 593 SE----NLRMQFGKLLCL-----TSVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEE--KFSSEEVKEKL 661 (1071)
Q Consensus 593 L~----~~~~~ivkLL~~-----ga~in~~~~~~~~~e~~~l~~~i~~ll~~d~~g~tpLl~Aa~~g--~~s~~~~~~~l 661 (1071)
+| .++..++++|+. +++.+............ .......+..++|||+.|+..+ +..
T Consensus 88 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~g~t~L~~A~~~g~~~~~-------- 154 (364)
T 3ljn_A 88 IHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVN-----EIGSHVKHCKGQTALHWCVGLGPEYLE-------- 154 (364)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEE-----EETTEEEEESCCCHHHHHHHSCGGGHH--------
T ss_pred HHHHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHCCHHHHH-----HHCCCCCCCCCCCHHHHHHHCCCCHHH--------
T ss_conf 9999886998899999971333587778898630267665-----403566798898789999974996699--------
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCC-----CCCCCCCCCCHHHHHHHCC
Q ss_conf 99999965599999999949999972369994089999992999999999978999-----6423699997789999829
Q 001474 662 VQKLLKEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVN-----INFRDVNGWTALHWAAYCG 736 (1071)
Q Consensus 662 l~~llk~~l~~wLv~~Lle~Gadin~~D~~G~TpLHlAA~~G~~~iVk~LL~~Gad-----in~~D~~G~TpLH~Aa~~G 736 (1071)
+++.|++.|++++..|..|.||||+|+..|+.++|++|+++|++ +|.+|..|+||||+|+..|
T Consensus 155 ------------~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g 222 (364)
T 3ljn_A 155 ------------MIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILIN 222 (364)
T ss_dssp ------------HHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTT
T ss_pred ------------HHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCC
T ss_conf ------------99999976999736288999899999982989999999860554123555232889980999999759
Q ss_pred CHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCC
Q ss_conf 9999999998399999988999999999979999997292999999998299
Q 001474 737 RERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDL 788 (1071)
Q Consensus 737 ~~eiV~lLL~~GAdvn~~~d~n~~D~~G~TPLhlAa~~G~~~iv~lLLe~g~ 788 (1071)
+.++|++|+++|++++. +|..|.||||+|+..|+.+++++|+++|+
T Consensus 223 ~~~~v~~Ll~~gad~~~------~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~ 268 (364)
T 3ljn_A 223 WEDVAMRFVEMGIDVNM------EDNEHTVPLYLSVRAAMVLLTKELLQKTD 268 (364)
T ss_dssp CHHHHHHHHTTTCCTTC------CCTTSCCHHHHHHHTCCHHHHHHHHHHSC
T ss_pred CHHHHHHHHHCCCCCCC------CCCCCCCHHHHHHHHCHHHHHHHHHHCCC
T ss_conf 88999999986999888------79999988999998382999999997488
No 4
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=1.00 E-value=1 Score=262.78 Aligned_cols=223 Identities=17% Similarity=0.135 Sum_probs=190.4
Q ss_pred CCCCHHHHHHHHCCCCHHHHHHH--------HCCCCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCC
Q ss_conf 55344979999829936899999--------8899877778988998078999853997621566763101999954457
Q 001474 515 QQEAENCKWSCMFGEIEVPAEIV--------AGGVLRCHTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIPDVDVAD 586 (1071)
Q Consensus 515 ~~~~T~LH~Ac~fG~veVv~~LL--------~~Gv~vc~~~~d~~G~TPLhiAa~ng~~~seVv~fe~Ll~~Gadina~D 586 (1071)
..+.|+||+||..|+.++++.|+ +.|++++ ..+..|.||||+|+.+| +.+++ ++|+..|++++..+
T Consensus 123 ~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn--~~d~~g~TpL~~A~~~g--~~~iv--~~Ll~~ga~~~~~~ 196 (373)
T 2fo1_E 123 RHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVN--AMDCDENTPLMLAVLAR--RRRLV--AYLMKAGADPTIYN 196 (373)
T ss_dssp SSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTT--CCCTTSCCHHHHHHHHT--CHHHH--HHHHHTTCCSCCCC
T ss_pred CCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCC--CCCCCCCCHHHHHHHCC--HHHHH--HHHHHCCCCCCCCC
T ss_conf 67988899998779877899999999999986599876--77899989899999869--49999--99997799976158
Q ss_pred CCCCCHHH----HHHHHHHHHHCC-C---CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHH
Q ss_conf 99992655----338999999702-8---999999999980345788999764211589850288998751598847899
Q 001474 587 NCGDITSE----NLRMQFGKLLCL-T---SVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVK 658 (1071)
Q Consensus 587 ~~G~TaL~----~~~~~ivkLL~~-g---a~in~~~~~~~~~e~~~l~~~i~~ll~~d~~g~tpLl~Aa~~g~~s~~~~~ 658 (1071)
..|.||+| .++..++++|+. + ++++.. +..|+++|+.++..++...
T Consensus 197 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~----------------------d~~g~t~L~~A~~~~~~~~---- 250 (373)
T 2fo1_E 197 KSERSALHQAAANRDFGMMVYMLNSTKLKGDIEEL----------------------DRNGMTALMIVAHNEGRDQ---- 250 (373)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCC----------------------CTTSCCHHHHHHHSCSTTH----
T ss_pred CCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCHHHC----------------------CCCCCCHHHHHHHHCCCCH----
T ss_conf 98987999998779988999998457655673223----------------------7789979999998378344----
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCC--------CCCCCCHHHHHHHHCCCHHHHHHHHHCC-CCCCCCCCCCCCHH
Q ss_conf 99999999965599999999949999972--------3699940899999929999999999789-99642369999778
Q 001474 659 EKLVQKLLKEKLQVWLVQKAAEGGKGPCV--------LDHCGQGVLHFAAALGYDWALEPTTVAG-VNINFRDVNGWTAL 729 (1071)
Q Consensus 659 ~~ll~~llk~~l~~wLv~~Lle~Gadin~--------~D~~G~TpLHlAA~~G~~~iVk~LL~~G-adin~~D~~G~TpL 729 (1071)
..+++.|++.|++++. .|..|.||||+|+..|+.++|++|++.| +++|.+|..|+|||
T Consensus 251 -------------~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL 317 (373)
T 2fo1_E 251 -------------VASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPI 317 (373)
T ss_dssp -------------HHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHH
T ss_pred -------------HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCHH
T ss_conf -------------9999999977997655554445755545888999999809999999999736898667698999899
Q ss_pred HHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCC
Q ss_conf 99998299999999998399999988999999999979999997292999999998299
Q 001474 730 HWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDL 788 (1071)
Q Consensus 730 H~Aa~~G~~eiV~lLL~~GAdvn~~~d~n~~D~~G~TPLhlAa~~G~~~iv~lLLe~g~ 788 (1071)
|+|+..|+.++|++|+++|++++. +|..|.||||+|+.+|+.+++++|+++++
T Consensus 318 ~~A~~~g~~~iv~~Ll~~gad~~~------~d~~g~t~l~~A~~~g~~~iv~~Ll~~~a 370 (373)
T 2fo1_E 318 MLAAQEGRIEVVMYLIQQGASVEA------VDATDHTARQLAQANNHHNIVDIFDRCRP 370 (373)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCSSC------CCSSSCCHHHHHHHTTCHHHHHHHHTTC-
T ss_pred HHHHHCCCHHHHHHHHHCCCCCCC------CCCCCCCHHHHHHHCCCHHHHHHHHHCCC
T ss_conf 999986899999999976998547------79899999999998598889999873373
No 5
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=1.00 E-value=1 Score=261.85 Aligned_cols=266 Identities=20% Similarity=0.099 Sum_probs=206.6
Q ss_pred CCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHH
Q ss_conf 55344979999829936899999889987777898899807899985399762156676310199995445799992655
Q 001474 515 QQEAENCKWSCMFGEIEVPAEIVAGGVLRCHTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIPDVDVADNCGDITSE 594 (1071)
Q Consensus 515 ~~~~T~LH~Ac~fG~veVv~~LL~~Gv~vc~~~~d~~G~TPLhiAa~ng~~~seVv~fe~Ll~~Gadina~D~~G~TaL~ 594 (1071)
..+.||||+||..|+.+++++|++.|++++ ..+..|.||||+|+..| +.+++ ++|+..|++++..+..|.||+|
T Consensus 56 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~--~~~~~g~t~L~~A~~~g--~~~iv--~~Ll~~g~~~~~~~~~g~t~L~ 129 (351)
T 3utm_A 56 GRKSTPLHLAAGYNRVRIVQLLLQHGADVH--AKDKGGLVPLHNACSYG--HYEVT--ELLLKHGACVNAMDLWQFTPLH 129 (351)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTCCCHHHHHHHTT--CHHHH--HHHHHTTCCTTCCCTTCCCHHH
T ss_pred CCCCCHHHHHHHCCCHHHHHHHHHCCCCCC--CCCCCCCCHHHHHHHCC--CHHHH--HHHHHCCCCCCCCCCCCCCHHH
T ss_conf 999889999998599999999997699997--61799980899999778--89999--9999779999977888998999
Q ss_pred ----HHHHHHHHHHCC-CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHH--HHHHHHHHHHHH
Q ss_conf ----338999999702-8999999999980345788999764211589850288998751598847--899999999999
Q 001474 595 ----NLRMQFGKLLCL-TSVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSE--EVKEKLVQKLLK 667 (1071)
Q Consensus 595 ----~~~~~ivkLL~~-ga~in~~~~~~~~~e~~~l~~~i~~ll~~d~~g~tpLl~Aa~~g~~s~~--~~~~~ll~~llk 667 (1071)
.++..++++|.. |++++..+ ..+.++++.+...+..... ......+..++.
T Consensus 130 ~A~~~~~~~~v~~Ll~~g~~~~~~~----------------------~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~ 187 (351)
T 3utm_A 130 EAASKNRVEVCSLLLSHGADPTLVN----------------------CHGKSAVDMAPTPELRERLTYEFKGHSLLQAAR 187 (351)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTTCCC----------------------TTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHCCCCCCCCC----------------------CCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 9997499999999997699986336----------------------789862377753325899986404217999998
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHC---CCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHH
Q ss_conf 65599999999949999972369994089999992---999999999978999642369999778999982999999999
Q 001474 668 EKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAAL---GYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASL 744 (1071)
Q Consensus 668 ~~l~~wLv~~Lle~Gadin~~D~~G~TpLHlAA~~---G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~eiV~lL 744 (1071)
..... .+..++..+......+..|.||||+|+.. +..+++++|+..|+++|.+|..|+||||+|+..|+.++|++|
T Consensus 188 ~~~~~-~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~L 266 (351)
T 3utm_A 188 EADLA-KVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVL 266 (351)
T ss_dssp TTCHH-HHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred HCCHH-HHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHH
T ss_conf 32499-99999970001335788899889999997175589999999975999677699999899999985989899999
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHH-HHHHHCCCCC
Q ss_conf 983999999889999999999799999972929999999982998865456334888890876425-5332000158
Q 001474 745 IALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSAISLNKKDGDVAEVTGA-TAVQTVPQRC 820 (1071)
Q Consensus 745 L~~GAdvn~~~d~n~~D~~G~TPLhlAa~~G~~~iv~lLLe~g~~~~~adl~~~d~~G~ta~i~a~-~~v~~l~~r~ 820 (1071)
+++|++++. +|..|.||||+|+..|+.+++++|+++| +++++.|..|.++...+. ..++.+.+..
T Consensus 267 l~~ga~~n~------~d~~g~t~L~~A~~~~~~~~v~~Ll~~g-----ad~~~~~~~g~tal~~a~~~~~~~l~~~~ 332 (351)
T 3utm_A 267 HKHGAKMNA------LDSLGQTALHRAALAGHLQTCRLLLSYG-----SDPSIISLQGFTAAQMGNEAVQQILSEST 332 (351)
T ss_dssp HHTTCCTTC------CCTTSCCHHHHHHHHTCHHHHHHHHHTT-----CCTTCCCTTSCCHHHHSCHHHHHHHHHC-
T ss_pred HHCCCCCCC------CCCCCCCHHHHHHHCCCHHHHHHHHHCC-----CCCCCCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 987999877------5999998899999828599999999849-----99888688998836563699999987606
No 6
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=1.00 E-value=1 Score=260.44 Aligned_cols=231 Identities=14% Similarity=0.058 Sum_probs=196.2
Q ss_pred CCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHH--
Q ss_conf 344979999829936899999889987777898899807899985399762156676310199995445799992655--
Q 001474 517 EAENCKWSCMFGEIEVPAEIVAGGVLRCHTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIPDVDVADNCGDITSE-- 594 (1071)
Q Consensus 517 ~~T~LH~Ac~fG~veVv~~LL~~Gv~vc~~~~d~~G~TPLhiAa~ng~~~seVv~fe~Ll~~Gadina~D~~G~TaL~-- 594 (1071)
+.||||+||..|+.++++.|++.|++++ ..+..|.||||+||..| +.+++ ++|++.|++++..|..|.||+|
T Consensus 3 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~--~~~~~g~t~L~~A~~~g--~~~~v--~~Ll~~g~~~~~~~~~g~t~L~~A 76 (261)
T 2xai_A 3 DWSPMHEAAIHGHQLSLRNLISQGWAVN--IITADHVSPLHEACLGG--HLSCV--KILLKHGAQVNGVTADWHTPLFNA 76 (261)
T ss_dssp -CCHHHHHHHHTCHHHHHHHHHTTCCSS--CCCTTCCCHHHHHHHHT--CHHHH--HHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred CCCHHHHHHHCCCHHHHHHHHHCCCCCC--CCCCCCCCHHHHHHHCC--CHHHH--HHHHHCCCCCCCCCCCCCCHHHHH
T ss_conf 7779999998298999999997799999--85899987799999849--99999--999987999887788899879999
Q ss_pred --HHHHHHHHHHCC-CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf --338999999702-89999999999803457889997642115898502889987515988478999999999996559
Q 001474 595 --NLRMQFGKLLCL-TSVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLVQKLLKEKLQ 671 (1071)
Q Consensus 595 --~~~~~ivkLL~~-ga~in~~~~~~~~~e~~~l~~~i~~ll~~d~~g~tpLl~Aa~~g~~s~~~~~~~ll~~llk~~l~ 671 (1071)
.++..++++|.. |++++.. .++.+||+.|+..++.+
T Consensus 77 ~~~~~~~~v~~Ll~~g~~~~~~-----------------------~~g~t~L~~A~~~~~~~------------------ 115 (261)
T 2xai_A 77 CVSGSWDCVNLLLQHGASVQPE-----------------------SDLASPIHEAARRGHVE------------------ 115 (261)
T ss_dssp HHHTCHHHHHHHHHTTCCSSCS-----------------------CTTCCHHHHHHHTTCHH------------------
T ss_pred HHCCCHHHHHHHHHCCCCCCCC-----------------------CCCCCHHHHHHHCCCHH------------------
T ss_conf 9869899999999878999989-----------------------99999899999848699------------------
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCC
Q ss_conf 99999999499999723699940899999929999999999789996423699997789999829999999999839999
Q 001474 672 VWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAP 751 (1071)
Q Consensus 672 ~wLv~~Lle~Gadin~~D~~G~TpLHlAA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~eiV~lLL~~GAdv 751 (1071)
+++.|++.|++++..|..|.||||+|+..|+.+++++|++.|+++|. +..|+||||+|+..|+.++|++|+++|+++
T Consensus 116 --~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~g~t~Lh~A~~~~~~~~v~~Ll~~gad~ 192 (261)
T 2xai_A 116 --CVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVARTASEELACLLMDFGADT 192 (261)
T ss_dssp --HHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHHTCCTTC-CBTTBCHHHHHHHHTCHHHHHHHHHTTCCT
T ss_pred --HHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHCCCHHHHHHHHHCCCCC
T ss_conf --99999986998786778899889999980989999999986999887-999998699998819899999999859799
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCC---CCCCCCCCCCCCHH
Q ss_conf 9988999999999979999997292999999998299886---54563348888908
Q 001474 752 GALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSA---LSAISLNKKDGDVA 805 (1071)
Q Consensus 752 n~~~d~n~~D~~G~TPLhlAa~~G~~~iv~lLLe~g~~~~---~adl~~~d~~G~ta 805 (1071)
+. +|..|+||||+|+..+. ++++|++++.... +.++++++..|.++
T Consensus 193 ~~------~d~~g~tpl~~A~~~~~--~~~~ll~~~~~~~l~~~~~~~~r~~~g~t~ 241 (261)
T 2xai_A 193 QA------KNAEGKRPVELVPPESP--LAQLFLEREGPPSLMQLCRLRIRKCFGIQQ 241 (261)
T ss_dssp TC------CCTTSCCGGGGSCTTCT--HHHHHHHC-CCCCHHHHHHHHHHTTSCTTC
T ss_pred CC------CCCCCCCHHHHCCCCCC--HHHHHHHCCCCCCHHHHHHHHHHHHHCHHC
T ss_conf 87------38999976551666445--999998625991599998899999965213
No 7
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=1.00 E-value=1 Score=259.42 Aligned_cols=254 Identities=13% Similarity=0.015 Sum_probs=198.9
Q ss_pred CCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCC-CCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 68553449799998299368999998899877-77898899807899985399762156676310199995445799992
Q 001474 513 MSQQEAENCKWSCMFGEIEVPAEIVAGGVLRC-HTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIPDVDVADNCGDI 591 (1071)
Q Consensus 513 ~~~~~~T~LH~Ac~fG~veVv~~LL~~Gv~vc-~~~~d~~G~TPLhiAa~ng~~~seVv~fe~Ll~~Gadina~D~~G~T 591 (1071)
.+..+.||||+||..|+.+++++|++.|.+.+ ....+..|.||||+||..| +.+++ ++|+..|++++..+..|.|
T Consensus 5 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g--~~~~v--~~Ll~~ga~~~~~~~~g~t 80 (282)
T 1oy3_D 5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILG--EASTV--EKLYAAGAGVLVAERGGHT 80 (282)
T ss_dssp CCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHT--CHHHH--HHHHHTTCCSSCCCTTSCC
T ss_pred CCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCC--CHHHH--HHHHHCCCCCCCCCCCCCC
T ss_conf 3899980999999768788999998547774310064788987999999869--99999--9999869998877989999
Q ss_pred HHH----HHHHHHHHHHCC-CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 655----338999999702-899999999998034578899976421158985028899875159884789999999999
Q 001474 592 TSE----NLRMQFGKLLCL-TSVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLVQKLL 666 (1071)
Q Consensus 592 aL~----~~~~~ivkLL~~-ga~in~~~~~~~~~e~~~l~~~i~~ll~~d~~g~tpLl~Aa~~g~~s~~~~~~~ll~~ll 666 (1071)
|+| .++..++++|.. ++.......... ..... ......+.++++.+.....
T Consensus 81 pL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~-------~~~~~--~~~~~~~~~~~~~~~~~~~--------------- 136 (282)
T 1oy3_D 81 ALHLACRVRAHTCACVLLQPRPSHPRDASDTY-------LTQSQ--DCTPDTSHAPAAVDSQPNP--------------- 136 (282)
T ss_dssp HHHHHTTTTCHHHHHHHSSSCCSSCCCC----------------------------------------------------
T ss_pred HHHHHHHCCCCCHHHHHHCCCCCCCHHHHHHH-------HHCCC--CCCCCHHCCHHHHCCCCCC---------------
T ss_conf 99999873884055764234777722467777-------52343--4585011002220135653---------------
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCC-CCCHHHHHHHCCCHHHHHHHH
Q ss_conf 9655999999999499999723699940899999929999999999789996423699-997789999829999999999
Q 001474 667 KEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVN-GWTALHWAAYCGRERTVASLI 745 (1071)
Q Consensus 667 k~~l~~wLv~~Lle~Gadin~~D~~G~TpLHlAA~~G~~~iVk~LL~~Gadin~~D~~-G~TpLH~Aa~~G~~eiV~lLL 745 (1071)
...+...+...+.+++..+..|.||||+|+..|+.++|++|+++|++++.++.. |+||||+|+..|+.++|++|+
T Consensus 137 ----~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll 212 (282)
T 1oy3_D 137 ----ENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLL 212 (282)
T ss_dssp -----------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred ----CHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHH
T ss_conf ----0000023355540577767899689999997499999999998389878888778968999998839899999999
Q ss_pred HCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 8399999988999999999979999997292999999998299886545633488889087642
Q 001474 746 ALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSAISLNKKDGDVAEVTG 809 (1071)
Q Consensus 746 ~~GAdvn~~~d~n~~D~~G~TPLhlAa~~G~~~iv~lLLe~g~~~~~adl~~~d~~G~ta~i~a 809 (1071)
++|++++. +|..|.||||+|+..|+.+++++|+++| ++++.++..|.++...+
T Consensus 213 ~~gad~~~------~d~~g~tpL~~A~~~~~~~~v~~Ll~~g-----a~~~~~~~~g~tpl~~a 265 (282)
T 1oy3_D 213 KAGADPTA------RMYGGRTPLGSALLRPNPILARLLRAHG-----APEPEDGGDKLSPCSSS 265 (282)
T ss_dssp HTTCCTTC------CCTTSCCHHHHHHTSSCHHHHHHHHHTT-----CCCCCCC----------
T ss_pred HCCCCCCC------CCCCCCCHHHHHHHCCCCHHHHHHHHCC-----CCCCCCCCCCCCCCCCC
T ss_conf 75999866------4469997899999849917999999849-----98576787455654335
No 8
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=1.00 E-value=1 Score=257.17 Aligned_cols=222 Identities=16% Similarity=0.117 Sum_probs=197.5
Q ss_pred CCCCCCHHHHHHHHCC-------------CCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHCCC
Q ss_conf 6855344979999829-------------936899999889987777898899807899985399762156676310199
Q 001474 513 MSQQEAENCKWSCMFG-------------EIEVPAEIVAGGVLRCHTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHI 579 (1071)
Q Consensus 513 ~~~~~~T~LH~Ac~fG-------------~veVv~~LL~~Gv~vc~~~~d~~G~TPLhiAa~ng~~~seVv~fe~Ll~~G 579 (1071)
.+..+.||||+||..| +.++++.|+..|++.+ ...+..|.||||+||..| +.+++ ++|+..|
T Consensus 6 ~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~-~~~d~~g~t~L~~A~~~g--~~~~v--~~Ll~~g 80 (253)
T 1yyh_A 6 RGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLH-NQTDRTGETALHLAARYS--RSDAA--KRLLEAS 80 (253)
T ss_dssp -----------------------------------------------CCCTTSCCHHHHHHHTT--CHHHH--HHHHHTT
T ss_pred CCCCCCCHHHHHHHCCCCCCCCCHHHCCCCHHHHHHHHHCCCCCC-CCCCCCCCCHHHHHHHCC--CHHHH--HHHHHCC
T ss_conf 899998678998846654221321421797599999997368734-562899984999999869--99999--9999759
Q ss_pred CCCCCCCCCCCCHHH----HHHHHHHHHHCC-CC-CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCC
Q ss_conf 995445799992655----338999999702-89-999999999803457889997642115898502889987515988
Q 001474 580 PDVDVADNCGDITSE----NLRMQFGKLLCL-TS-VSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFS 653 (1071)
Q Consensus 580 adina~D~~G~TaL~----~~~~~ivkLL~~-ga-~in~~~~~~~~~e~~~l~~~i~~ll~~d~~g~tpLl~Aa~~g~~s 653 (1071)
++++..+..|.||+| .++..++++|.. ++ +++..+ ..+++||+.++..+...
T Consensus 81 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~----------------------~~g~t~L~~A~~~~~~~ 138 (253)
T 1yyh_A 81 ADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARM----------------------HDGTTPLILAARLAVEG 138 (253)
T ss_dssp CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCC----------------------TTCCCHHHHHHHHTCSS
T ss_pred CCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCC----------------------CCCCCHHHHHHHCCHHH
T ss_conf 99788799999899999986988999999975898754568----------------------89986999998848399
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Q ss_conf 47899999999999655999999999499999723699940899999929999999999789996423699997789999
Q 001474 654 SEEVKEKLVQKLLKEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAA 733 (1071)
Q Consensus 654 ~~~~~~~ll~~llk~~l~~wLv~~Lle~Gadin~~D~~G~TpLHlAA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa 733 (1071)
+++.|++.|++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+
T Consensus 139 --------------------~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~ 198 (253)
T 1yyh_A 139 --------------------MLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAA 198 (253)
T ss_dssp --------------------HHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred --------------------HHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
T ss_conf --------------------999999769998880999998999999868889999999769999986899999999999
Q ss_pred HCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCC
Q ss_conf 829999999999839999998899999999997999999729299999999829
Q 001474 734 YCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESD 787 (1071)
Q Consensus 734 ~~G~~eiV~lLL~~GAdvn~~~d~n~~D~~G~TPLhlAa~~G~~~iv~lLLe~g 787 (1071)
..|+.+++++|+++|++++. +|..|.||+++|+..|+.+++++|....
T Consensus 199 ~~~~~~~v~~Ll~~ga~~~~------~d~~g~tpl~~A~~~g~~~i~~~l~~~~ 246 (253)
T 1yyh_A 199 REGSYETAKVLLDHFANRDI------TDHMDRLPRDIAQERMHHDIVRLLDLEH 246 (253)
T ss_dssp HHTCHHHHHHHHHTTCCTTC------CCTTCCCHHHHHHHTTCHHHHHHHHC--
T ss_pred HCCCHHHHHHHHHCCCCCCC------CCCCCCCHHHHHHHCCCHHHHHHHHHHH
T ss_conf 87999999999986999330------0248998899998858789999999886
No 9
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=1.00 E-value=1 Score=257.12 Aligned_cols=234 Identities=17% Similarity=0.135 Sum_probs=198.2
Q ss_pred CCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCC-CCCCCHHHHHHHCCCCCCHHHHHHHH--------HCCCCCCCC
Q ss_conf 855344979999829936899999889987777898-89980789998539976215667631--------019999544
Q 001474 514 SQQEAENCKWSCMFGEIEVPAEIVAGGVLRCHTSSQ-KVGRVPFYVTCSNRLSCSEVREFEYR--------ASHIPDVDV 584 (1071)
Q Consensus 514 ~~~~~T~LH~Ac~fG~veVv~~LL~~Gv~vc~~~~d-~~G~TPLhiAa~ng~~~seVv~fe~L--------l~~Gadina 584 (1071)
+....|+||+||..| .++++.|+...++ ..+ ..|.||||+||.+| +.+++ ++| +..|+++|.
T Consensus 91 ~~~g~t~L~~Aa~~~-~~~~~~L~~~~~n----~~d~~~g~t~Lh~Aa~~g--~~~~v--~~Ll~~~~~~ll~~ga~vn~ 161 (373)
T 2fo1_E 91 EPESPIKLHTEAAGS-YAITEPITRESVN----IIDPRHNRTVLHWIASNS--SAEKS--EDLIVHEAKECIAAGADVNA 161 (373)
T ss_dssp ---CCCHHHHHHHSS-SCCCSCCSTTTTT----TCCCSSCCCHHHHHHCTT--CCSCC--TTHHHHHHHHHHHTCCCTTC
T ss_pred CCCCCCHHHHHHCCC-CHHHHHHCCCCCC----CCCCCCCCCHHHHHHHCC--CHHHH--HHHHHHHHHHHHHCCCCCCC
T ss_conf 999865799986387-1688875002343----357767988899998779--87789--99999999999865998767
Q ss_pred CCCCCCCHHH----HHHHHHHHHHCC-CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHH
Q ss_conf 5799992655----338999999702-89999999999803457889997642115898502889987515988478999
Q 001474 585 ADNCGDITSE----NLRMQFGKLLCL-TSVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKE 659 (1071)
Q Consensus 585 ~D~~G~TaL~----~~~~~ivkLL~~-ga~in~~~~~~~~~e~~~l~~~i~~ll~~d~~g~tpLl~Aa~~g~~s~~~~~~ 659 (1071)
.|..|.|||| .++..++++|+. |++++..+ ..+.++|+.|+..++..
T Consensus 162 ~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~----------------------~~g~t~L~~A~~~g~~~------ 213 (373)
T 2fo1_E 162 MDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYN----------------------KSERSALHQAAANRDFG------ 213 (373)
T ss_dssp CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCC----------------------TTCCCHHHHHHHTTCHH------
T ss_pred CCCCCCCHHHHHHHCCHHHHHHHHHHCCCCCCCCC----------------------CCCCCHHHHHHHCCCHH------
T ss_conf 78999898999998694999999997799976158----------------------98987999998779988------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCCCCCHHHHHHHHCC---CHHHHHHHHHCCCCCCC--------CCCCC
Q ss_conf 99999999655999999999499---999723699940899999929---99999999978999642--------36999
Q 001474 660 KLVQKLLKEKLQVWLVQKAAEGG---KGPCVLDHCGQGVLHFAAALG---YDWALEPTTVAGVNINF--------RDVNG 725 (1071)
Q Consensus 660 ~ll~~llk~~l~~wLv~~Lle~G---adin~~D~~G~TpLHlAA~~G---~~~iVk~LL~~Gadin~--------~D~~G 725 (1071)
+++.|++.+ ++++..|..|.||||+|+..| +.+++++|++.|++++. .|..|
T Consensus 214 --------------~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g 279 (373)
T 2fo1_E 214 --------------MMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKG 279 (373)
T ss_dssp --------------HHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCC
T ss_pred --------------HHHHHHHCCCCCCCHHHCCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf --------------999998457655673223778997999999837834499999999779976555544457555458
Q ss_pred CCHHHHHHHCCCHHHHHHHHHCC-CCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCH
Q ss_conf 97789999829999999999839-99999889999999999799999972929999999982998865456334888890
Q 001474 726 WTALHWAAYCGRERTVASLIALG-AAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSAISLNKKDGDV 804 (1071)
Q Consensus 726 ~TpLH~Aa~~G~~eiV~lLL~~G-Advn~~~d~n~~D~~G~TPLhlAa~~G~~~iv~lLLe~g~~~~~adl~~~d~~G~t 804 (1071)
+||||+|+..|+.++|++|++.| ++++. +|..|.||||+|+..|+.+++++|+++| ++++.+|..|.+
T Consensus 280 ~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~------~d~~g~TpL~~A~~~g~~~iv~~Ll~~g-----ad~~~~d~~g~t 348 (373)
T 2fo1_E 280 RTALHYAAQVSNMPIVKYLVGEKGSNKDK------QDEDGKTPIMLAAQEGRIEVVMYLIQQG-----ASVEAVDATDHT 348 (373)
T ss_dssp CCTHHHHHSSCCHHHHHHHHHHSCCCTTC------CCTTCCCHHHHHHHHTCHHHHHHHHHTT-----CCSSCCCSSSCC
T ss_pred CCHHHHHHHHCCHHHHHHHHHHCCCCCCC------CCCCCCCHHHHHHHCCCHHHHHHHHHCC-----CCCCCCCCCCCC
T ss_conf 88999999809999999999736898667------6989998999999868999999999769-----985477989999
Q ss_pred HHHHH
Q ss_conf 87642
Q 001474 805 AEVTG 809 (1071)
Q Consensus 805 a~i~a 809 (1071)
+...+
T Consensus 349 ~l~~A 353 (373)
T 2fo1_E 349 ARQLA 353 (373)
T ss_dssp HHHHH
T ss_pred HHHHH
T ss_conf 99999
No 10
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=1.00 E-value=1 Score=256.88 Aligned_cols=232 Identities=18% Similarity=0.135 Sum_probs=131.1
Q ss_pred CCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHH
Q ss_conf 53449799998299368999998899877778988998078999853997621566763101999954457999926553
Q 001474 516 QEAENCKWSCMFGEIEVPAEIVAGGVLRCHTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIPDVDVADNCGDITSEN 595 (1071)
Q Consensus 516 ~~~T~LH~Ac~fG~veVv~~LL~~Gv~vc~~~~d~~G~TPLhiAa~ng~~~seVv~fe~Ll~~Gadina~D~~G~TaL~~ 595 (1071)
+..|+||.||..|++++|+.||+.|++++.. .+..|.||||+||.+| +.+++ ++|+.+|++++..+..+.++++.
T Consensus 24 ~~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~-~~~~g~TpLh~A~~~g--~~~iv--~~Ll~~ga~~~~~~~~~~~~~~~ 98 (337)
T 4g8k_A 24 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQ-EEEGGWTPLHNAVQMS--REDIV--ELLLRHGADPVLRKKNGATPFIL 98 (337)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHTCCTTCC-CTTTCCCHHHHHHHTT--CHHHH--HHHHHTTCCTTCCCTTCCCHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHCCCCCCCC-CCCCCCCHHHHHHHCC--CHHHH--HHHHHCCCCHHHHCCCCCCHHHH
T ss_conf 8984999999848999999999879997834-8989969999999849--89999--99987599533321578864677
Q ss_pred ----HHHHHHHHH-CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf ----389999997-028999999999980345788999764211589850288998751598847899999999999655
Q 001474 596 ----LRMQFGKLL-CLTSVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLVQKLLKEKL 670 (1071)
Q Consensus 596 ----~~~~ivkLL-~~ga~in~~~~~~~~~e~~~l~~~i~~ll~~d~~g~tpLl~Aa~~g~~s~~~~~~~ll~~llk~~l 670 (1071)
....+..++ ..+++++..+ ..|+|||+.++..+...
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~d----------------------~~g~t~l~~A~~~~~~~----------------- 139 (337)
T 4g8k_A 99 AAIAGSVKLLKLFLSKGADVNECD----------------------FYGFTAFMEAAVYGKVK----------------- 139 (337)
T ss_dssp HHHHTCHHHHHHHHTTTCCTTCBC----------------------TTCCBHHHHHHHTTCHH-----------------
T ss_pred HHHCCCCHHHHHHHHCCCHHHHHC----------------------CCCCCHHHHHHHCCCHH-----------------
T ss_conf 775054135677631020055530----------------------37998799998718699-----------------
Q ss_pred HHHHHHHHHHCCCCCCCC----------CCCCCHHHHHHHHCCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHCCC--
Q ss_conf 999999999499999723----------6999408999999299999999997-899964236999977899998299--
Q 001474 671 QVWLVQKAAEGGKGPCVL----------DHCGQGVLHFAAALGYDWALEPTTV-AGVNINFRDVNGWTALHWAAYCGR-- 737 (1071)
Q Consensus 671 ~~wLv~~Lle~Gadin~~----------D~~G~TpLHlAA~~G~~~iVk~LL~-~Gadin~~D~~G~TpLH~Aa~~G~-- 737 (1071)
+++.+++.|++++.. +..|.||||+|+..|+.++|++||. .|+++|.+|..|.|+||+++..+.
T Consensus 140 ---~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~ 216 (337)
T 4g8k_A 140 ---ALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDS 216 (337)
T ss_dssp ---HHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTT
T ss_pred ---HHHHHHHCCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCC
T ss_conf ---99999975998343330132200036789769999998778999999986349896765788972789999973756
Q ss_pred --HHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCH
Q ss_conf --9999999983999999889999999999799999972929999999982998865456334888890
Q 001474 738 --ERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSAISLNKKDGDV 804 (1071)
Q Consensus 738 --~eiV~lLL~~GAdvn~~~d~n~~D~~G~TPLhlAa~~G~~~iv~lLLe~g~~~~~adl~~~d~~G~t 804 (1071)
..++++|+++|++++. +|..|.||||+|+..|+.+++++|++.+ +++++.+|..|.|
T Consensus 217 ~~~~i~~lLl~~gad~n~------~d~~g~t~L~~a~~~~~~~~v~~Ll~~~----~~~vn~~d~~G~T 275 (337)
T 4g8k_A 217 DVEAITHLLLDHGADVNV------RGERGKTPLILAVEKKHLGLVQRLLEQE----HIEINDTDSDGKT 275 (337)
T ss_dssp THHHHHHHHHHTTCCTTC------CCGGGCCHHHHHHHTTCHHHHHHHHTST----TCCTTCBCTTSCB
T ss_pred CHHHHHHHHHHCCCCCCC------CCCCCCCHHHHHHHHHHHHHHHHHHHHC----CCCCCCCCCCCCC
T ss_conf 689999999977999887------6899998789999851258999998734----8756676899999
Done!