BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001475
(1071 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7TPQ3|SHPRH_MOUSE E3 ubiquitin-protein ligase SHPRH OS=Mus musculus GN=Shprh PE=1 SV=1
Length = 1674
Score = 323 bits (827), Expect = 6e-87, Method: Compositional matrix adjust.
Identities = 185/472 (39%), Positives = 250/472 (52%), Gaps = 53/472 (11%)
Query: 162 RVECICGAVSE-SRKYKGLWVQCDICDAWQHADCVGYSPRGKKRRSTFELKKHTRKKDMT 220
R ECICG + K + VQC C WQHA CV Y + K + +
Sbjct: 649 RFECICGEFDQIGHKPR---VQCLKCHLWQHAKCVNYEEKNLKVKPFY------------ 693
Query: 221 NIVVRDGEHICQWCDELIEATDSPVATGATLIVCPAPILAQWDAEITRHTRPGSLKTCIY 280
C C +E PV+T ATLI+ P+ I QW EI RH R SL+ +Y
Sbjct: 694 ----------CPHCLVAME----PVSTRATLIISPSSICHQWVDEINRHVRSSSLRVLVY 739
Query: 281 EGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEG--DRRFMRFQKRYPV 338
+G + L DIV+ TYDVL+ +L++ + H D R +R QKRY
Sbjct: 740 QGVKKHGFLQPHF-----LAEQDIVIITYDVLRSELNYVNIPHSNSEDGRRLRNQKRYMA 794
Query: 339 IPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLR 398
IP+ L + WWRICLDEAQMVE A EMA RL +RWCI+GTP+QR L+DL+GL+
Sbjct: 795 IPSPLVAVEWWRICLDEAQMVECPTVKAAEMAQRLSGINRWCISGTPVQRGLEDLFGLVV 854
Query: 399 FLKSSPFSISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEEC 458
FL P+ + WWI ++ PY + + + F +IM RS+K V D++Q+PPQ E
Sbjct: 855 FLGIEPYCVKHWWIRLLYHPYCKKNP---QHLYSFIAKIMWRSAKKDVIDQIQIPPQTEE 911
Query: 459 VSWLTFSPIEEHFYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEA 518
+ WL FSP+E HFY QHE C A ++++ D LK + +
Sbjct: 912 MHWLHFSPVERHFYHRQHEVCCQDAIVKLRKISDWALKLSS-------------LDRRTV 958
Query: 519 AKLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKIEGEEALRKLVMAL 578
+ +L LL+LRQACCHPQ LQ+S ++M+E+L L K E EEA R+LV AL
Sbjct: 959 SSILYPLLRLRQACCHPQAVRGEFLPLQKSTMTMEELLTSLQKKCGTECEEAHRQLVCAL 1018
Query: 579 NGLAGIALIEKNLSQAVSLYKEAMAVVEEHSEDFRLDPLLNIHLHHNLTEIL 630
NGLAGI +I+ + A LY+E + EEH + D L +H HNL E+L
Sbjct: 1019 NGLAGIHIIKGEYALAAELYREVLRSSEEHKGKLKTDSLQRLHATHNLMELL 1070
Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/167 (34%), Positives = 84/167 (50%), Gaps = 25/167 (14%)
Query: 33 PDLLPLLRPYQRRAAYWMVQREKGDSASSSERERSQFFSPLCMPMDFLDTYSTLFYNPFS 92
P L+P+LRPYQR A WM+Q+E+ SA ++ + + P D L L+YNP++
Sbjct: 293 PALIPVLRPYQREAVNWMLQQEQFRSAPPADNSLHFLWREIVTP-DGLK----LYYNPYT 347
Query: 93 GSLSLSPDYTSSYVFGGILADEMGLGKTVELLACIFAH-RKPASDDSIFIDTAVQVT--- 148
G + + + GGILADEMGLGKTVE+LA I H R+ D++ + V
Sbjct: 348 GCIIRDFPHAGPQLLGGILADEMGLGKTVEVLALILTHTRQDVKQDALTLPEGKVVNYFI 407
Query: 149 ----DDQKVNLRRLK------RERVEC------ICGAVSESRKYKGL 179
+KV R ++ +E+V C I AV E KG+
Sbjct: 408 PTHCPREKVKNREIQDTEYEPKEKVHCPPTRVMILTAVKEMNGKKGV 454
Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 78/364 (21%), Positives = 153/364 (42%), Gaps = 51/364 (14%)
Query: 713 SFDDASLITVCENLKQKYLSGFSVKLSVAQQEFRKSYMQVCNALDDREKQYSAWWLEALH 772
+ D L + L++ Y+S + +++ AQQ + Q L + S WWL +H
Sbjct: 1080 TLRDGRLEEEAKQLREHYMSKCNTEVAEAQQAL-QPVQQSIRELQRKIHSNSPWWLNVIH 1138
Query: 773 HAEGNKDFSA--ELIRKIEEAISGSL-NKSRALRTASRYRSISGLTYHIQSSLDQLEASR 829
A +FS EL++++ IS + ++ L + ++R GL + + + +++L +
Sbjct: 1139 RA---MEFSVDEELVQRVRNEISSNYKQQTDKLSMSEKFRDCRGLQFLLTTQMEELHKFQ 1195
Query: 830 KTLLDRLLEIDQTMEKPKEEDMDRMRHCRICYGVGDGPICVHCELDESFQDYEARLFRLK 889
K + + + ++++ P E ++ C + CV C+ DE F +YE++LF
Sbjct: 1196 KLVREAVKKLEKP---PSREVIESATVCHLRPARLPLNCCVFCKADELFTEYESKLF-FN 1251
Query: 890 KSQGDIASAEEAVD-----LQKKNSSLNRFYWYLSQPNKNSTSSSVGNEEIKRRDVRETV 944
+G A EE ++ + + + R W
Sbjct: 1252 TVKGQTAIFEEMIEDEEGLVDDRVPTTTRGLW---------------------------- 1283
Query: 945 VVSKSPSELEVILGVIKNYCKTQLGREAISASSKQLHILEAMRKEYANARSLATAQAQFL 1004
VS++ ++ IL +++ + E + S + + EA +KEY +
Sbjct: 1284 AVSETERSMKAILSFARSH---RFDVEYVDEGSVSMDLFEAWKKEYKLLHEYWMTLRNRV 1340
Query: 1005 RAHDEIRMATTRL---HLKEDDNDTSV-DALSPDELASASVTNSSEKFISMTLLSQVKGK 1060
A DE+ MAT RL H KE + V + P E+ + ++K ++ + L + G+
Sbjct: 1341 SAVDELAMATERLRVRHPKEPKPNPPVHHIIEPHEVEQNRIKLVNDKAVATSQLQKKLGQ 1400
Query: 1061 LRYL 1064
L YL
Sbjct: 1401 LLYL 1404
>sp|Q149N8|SHPRH_HUMAN E3 ubiquitin-protein ligase SHPRH OS=Homo sapiens GN=SHPRH PE=1 SV=2
Length = 1683
Score = 322 bits (826), Expect = 8e-87, Method: Compositional matrix adjust.
Identities = 185/472 (39%), Positives = 251/472 (53%), Gaps = 53/472 (11%)
Query: 162 RVECICGAVSE-SRKYKGLWVQCDICDAWQHADCVGYSPRGKKRRSTFELKKHTRKKDMT 220
R ECICG + + RK + VQC C WQHA CV Y + K + +
Sbjct: 658 RFECICGELDQIDRKPR---VQCLKCHLWQHAKCVNYDEKNLKIKPFY------------ 702
Query: 221 NIVVRDGEHICQWCDELIEATDSPVATGATLIVCPAPILAQWDAEITRHTRPGSLKTCIY 280
C C +E PV+T ATLI+ P+ I QW EI RH R SL+ +Y
Sbjct: 703 ----------CPHCLVAME----PVSTRATLIISPSSICHQWVDEINRHVRSSSLRVLVY 748
Query: 281 EGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEG--DRRFMRFQKRYPV 338
+G + L DIV+ TYDVL+ +L++ H D R +R QKRY
Sbjct: 749 QGVKKDGFLQPHF-----LAEQDIVIITYDVLRSELNYVDIPHSNSEDGRRLRNQKRYMA 803
Query: 339 IPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLR 398
IP+ L + WWRICLDEAQMVE A EMA RL +RWCI+GTP+QR L+DL+GL+
Sbjct: 804 IPSPLVAVEWWRICLDEAQMVECPTVKAAEMAQRLSGINRWCISGTPVQRGLEDLFGLVV 863
Query: 399 FLKSSPFSISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEEC 458
FL P+ + WW+ ++ PY + + + F +I+ RS+K V D++Q+PPQ E
Sbjct: 864 FLGIEPYCVKHWWVRLLYRPYCKKNP---QHLYSFIAKILWRSAKKDVIDQIQIPPQTEE 920
Query: 459 VSWLTFSPIEEHFYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEA 518
+ WL FSP+E HFY QHE C ++V+ +L+ S AL +
Sbjct: 921 IHWLHFSPVERHFYHRQHEVC---CQDVVVKLRK----------ISDWALKLSSLDRRTV 967
Query: 519 AKLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKIEGEEALRKLVMAL 578
+L LL+LRQACCHPQ LQ+S ++M+E+L L K E EEA R+LV AL
Sbjct: 968 TSILYPLLRLRQACCHPQAVRGEFLPLQKSTMTMEELLTSLQKKCGTECEEAHRQLVCAL 1027
Query: 579 NGLAGIALIEKNLSQAVSLYKEAMAVVEEHSEDFRLDPLLNIHLHHNLTEIL 630
NGLAGI +I+ + A LY+E + EEH + D L +H HNL E+L
Sbjct: 1028 NGLAGIHIIKGEYALAAELYREVLRSSEEHKGKLKTDSLQRLHATHNLMELL 1079
Score = 80.5 bits (197), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 83/167 (49%), Gaps = 25/167 (14%)
Query: 33 PDLLPLLRPYQRRAAYWMVQREKGDSASSSERERSQFFSPLCMPMDFLDTYSTLFYNPFS 92
P L+P+LRPYQR A WM+Q+E S+ ++E + + L+YNP++
Sbjct: 298 PALIPVLRPYQREAVNWMLQQECFRSSPATESALHFLWREIVTSEGL-----KLYYNPYT 352
Query: 93 GSLSLSPDYTSSYVFGGILADEMGLGKTVELLACIFAH-RKPASDDSI----------FI 141
G + + + GGILADEMGLGKTVE+LA I H R+ D++ FI
Sbjct: 353 GCIIREYPNSGPQLLGGILADEMGLGKTVEVLALILTHTRQDVKQDALTLPEGKVVNYFI 412
Query: 142 DTAVQVTDDQKVNLRRLK---RERVEC------ICGAVSESRKYKGL 179
+ +K ++ ++ +E+V+C I AV E KG+
Sbjct: 413 PSHYFGGKLKKTEIQNIEFEPKEKVQCPPTRVMILTAVKEMNGKKGV 459
Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 76/366 (20%), Positives = 155/366 (42%), Gaps = 55/366 (15%)
Query: 713 SFDDASLITVCENLKQKYLSGFSVKLSVAQQEFRKSYMQVCNALDDREKQYSAWWLEALH 772
+ D L + L++ Y+S + +++ AQQ Q + L + S WWL +H
Sbjct: 1089 TLRDGRLEEEAKQLREHYMSKCNTEVAEAQQALY-PVQQTIHELQRKIHSNSPWWLNVIH 1147
Query: 773 HA-EGNKDFSAELIRKIEEAISGSLNKSRA-LRTASRYRSISGLTYHIQSSLDQLEASRK 830
A E D EL++++ I+ + + L + ++R GL + + + +++L +K
Sbjct: 1148 RAIEFTID--EELVQRVRNEITSNYKQQTGKLSMSEKFRDCRGLQFLLTTQMEELNKCQK 1205
Query: 831 TLLDRLLEIDQTMEKPKEEDMDRMRHCRICY-GVGDGPI--CVHCELDESFQDYEARLFR 887
+ + + + +E P ++ + +C+ P+ CV C+ DE F +YE++LF
Sbjct: 1206 LVREAV----KNLEGPPSRNV--IESATVCHLRPARLPLNCCVFCKADELFTEYESKLFS 1259
Query: 888 LKKSQGDIASAEEAVD-----LQKKNSSLNRFYWYLSQPNKNSTSSSVGNEEIKRRDVRE 942
+G A EE ++ + + + R W +S+ ++
Sbjct: 1260 -NTVKGQTAIFEEMIEDEEGLVDDRAPTTTRGLWAISETERS------------------ 1300
Query: 943 TVVVSKSPSELEVILGVIKNYCKTQLGREAISASSKQLHILEAMRKEYANARSLATAQAQ 1002
++ IL K++ + E + S + + EA +KEY A
Sbjct: 1301 ----------MKAILSFAKSH---RFDVEFVDEGSTSMDLFEAWKKEYKLLHEYWMALRN 1347
Query: 1003 FLRAHDEIRMATTRLHLKE----DDNDTSVDALSPDELASASVTNSSEKFISMTLLSQVK 1058
+ A DE+ MAT RL +++ N + + P E+ + ++K ++ + L +
Sbjct: 1348 RVSAVDELAMATERLRVRDPREPKPNPPVLHIIEPHEVEQNRIKLLNDKAVATSQLQKKL 1407
Query: 1059 GKLRYL 1064
G+L YL
Sbjct: 1408 GQLLYL 1413
>sp|Q9FNI6|SM3L2_ARATH Putative SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin subfamily A member 3-like 2
OS=Arabidopsis thaliana GN=At5g22750 PE=2 SV=1
Length = 1029
Score = 150 bits (379), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 96/302 (31%), Positives = 136/302 (45%), Gaps = 59/302 (19%)
Query: 243 SPVATGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGA 302
S + G LIVCP +L QW EI H +PGSL ++ G D L +
Sbjct: 485 SVLQNGGNLIVCPMTLLGQWKTEIEMHAKPGSLSVYVHYGQSRPK-------DAKLLSQS 537
Query: 303 DIVLTTYDVLKEDLSH-DSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVES 361
D+V+TTY VL + S +S HEG + + W+RI LDEA +++
Sbjct: 538 DVVITTYGVLTSEFSQENSADHEG-----------------IYAVRWFRIVLDEAHTIKN 580
Query: 362 NAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRWWIEVIRDPYEN 421
+ + + A L A RWC+TGTPIQ L+DLY LLRFL+ P+ WW ++++ P+E
Sbjct: 581 SKSQISLAAAALVADRRWCLTGTPIQNNLEDLYSLLRFLRIEPWGTWAWWNKLVQKPFEE 640
Query: 422 GDVGAMEFTHKFFKEIMCRSSKVHVSDE----LQLPPQEECVSWLTFSPIEEHFYQSQHE 477
GD ++ K IM R +K E L LPP + V + S E FY
Sbjct: 641 GDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADARVIYCELSESERDFY----- 695
Query: 478 TCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEA----AKLLNSLLKLRQACC 533
D + KR S ++ + + A +L LL+LRQ C
Sbjct: 696 --------------DALFKR-------SKVKFDQFVEQGKVLHNYASILELLLRLRQCCD 734
Query: 534 HP 535
HP
Sbjct: 735 HP 736
Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 55/112 (49%), Gaps = 6/112 (5%)
Query: 21 LSDQKPMLEEDLP-DLLPLLRPYQRRAAYWMVQREKGDSASSSERERSQFFSPLCMPMDF 79
+ D + E + P LL LRPYQ++A +WM Q EKG+ E + P
Sbjct: 329 VGDSSGLKEMETPHTLLCELRPYQKQALHWMTQLEKGNCTD----EAATMLHPCWEAYCL 384
Query: 80 LDTYSTLFY-NPFSGSLSLSPDYTSSYVFGGILADEMGLGKTVELLACIFAH 130
D + Y N F+G ++ T GGILAD MGLGKTV ++ + AH
Sbjct: 385 ADKRELVVYLNSFTGDATIHFPSTLQMARGGILADAMGLGKTVMTISLLLAH 436
>sp|Q9FIY7|SM3L3_ARATH Putative SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin subfamily A member 3-like 3
OS=Arabidopsis thaliana GN=At5g43530 PE=3 SV=1
Length = 1277
Score = 142 bits (358), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 93/294 (31%), Positives = 134/294 (45%), Gaps = 51/294 (17%)
Query: 246 ATGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIV 305
A G TLI+CP +L+QW E+ H++P ++ +Y G + D + D+V
Sbjct: 739 AKGGTLIICPMALLSQWKDELETHSKPDTVSVLVYYGGDRTH-------DAKAIASHDVV 791
Query: 306 LTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAA 365
LTTY VL D + ++ RI W+RI LDEA ++S
Sbjct: 792 LTTYGVLTSAYKQD------------------MANSIFHRIDWYRIVLDEAHTIKSWKTQ 833
Query: 366 ATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRWWIEVIRDPYENGDVG 425
A + L + RWC+TGTP+Q KL+DLY LL FL P+ WW ++I+ PYENGD
Sbjct: 834 AAKATFELSSHCRWCLTGTPLQNKLEDLYSLLCFLHVEPWCNWAWWSKLIQKPYENGDPR 893
Query: 426 AMEFTHKFFKEIMCRSSKVHVSDE----LQLPPQEECVSWLTFSPIEEHFYQSQHETCVG 481
++ + +M R +K E L+LPP + V S E FY +
Sbjct: 894 GLKLIKAILRPLMLRRTKETRDKEGSLILELPPTDVQVIECEQSEAERDFYTAL------ 947
Query: 482 YAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHP 535
+ R +Q D + A L+N A +L LL+LRQ C HP
Sbjct: 948 FKRSKVQF--DQFV-------AQGKVLHN-------YANILELLLRLRQCCNHP 985
Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 54/109 (49%), Gaps = 8/109 (7%)
Query: 39 LRPYQRRAAYWMVQREKGDSASSSERERSQFFSPLCMPMDFLDTYS-TLFYNPFSGSLSL 97
LRPYQ++A YWM + EKG + ++ P D + +++ N FSG ++
Sbjct: 616 LRPYQKQALYWMSESEKGIDVEKA----AETLHPCWEAYRICDERAPSIYLNIFSGEATI 671
Query: 98 SPDYTSSYVFGGILADEMGLGKTVELLACIFAHR---KPASDDSIFIDT 143
+ GGILAD MGLGKTV +A I A P ++D + D
Sbjct: 672 QFPTATQMARGGILADAMGLGKTVMTIALILARPGRGNPENEDVLVADV 720
>sp|Q6PCN7|HLTF_MOUSE Helicase-like transcription factor OS=Mus musculus GN=Hltf PE=1
SV=1
Length = 1003
Score = 137 bits (344), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 103/335 (30%), Positives = 147/335 (43%), Gaps = 53/335 (15%)
Query: 236 ELIEATDSPVATGATLIVCPAPILAQWDAEITRHTRPG-SLKTCIYEGARNSSLSDTSIM 294
E EA D+ T ATLI+CP +L+ W + +H + L +Y G I
Sbjct: 458 ECSEACDTGERTRATLIICPLSVLSNWIDQFGQHVKSEVHLNFYVYYGP-------DRIR 510
Query: 295 DISELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLD 354
D + L DI+LTTY++L D D + L I W R+ LD
Sbjct: 511 DSAWLSKQDIILTTYNILTHDYGTKDD-------------------SPLHSIKWLRVILD 551
Query: 355 EAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRWWIEV 414
E + + A T+ L L A+ RW +TGTPIQ L DL+ LL FLK PF WW +
Sbjct: 552 EGHAIRNPNAQQTKAVLELEAERRWVLTGTPIQNSLKDLWSLLSFLKLKPFIDREWWYRI 611
Query: 415 IRDPYENGDVGAMEFTHKFFKEIMCR---SSKVHVSDELQLPPQEECVSWLTFSPIEEHF 471
I+ P GD G + K I R +SK+ L+LP ++ + +T S E
Sbjct: 612 IQRPVTTGDEGGLRRLQSLIKNITLRRTKTSKIKGKPVLELPERKVFIQHITLSEEERKI 671
Query: 472 YQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQA 531
YQS +K+ G A+ + A A +L LL+LRQ
Sbjct: 672 YQS---------------VKNE-------GKAAIGRYFTEGTVLAHYADVLGLLLRLRQI 709
Query: 532 CCHPQVGSSGLRSLQQS-PLSMDEILMVLIGKTKI 565
CCH + ++G+ S S + +E+ +LI K KI
Sbjct: 710 CCHTHLLTNGMSSSGPSRSDTPEELRKMLIEKMKI 744
Score = 47.0 bits (110), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 46/94 (48%), Gaps = 21/94 (22%)
Query: 37 PLLRPYQRRAAYWMVQREKGDSASSSERERSQFFSPLCMPMDFLDTYSTLFYNPFSGSLS 96
PLL P+Q++A WM+ RE S+ P F + + L+YN + +
Sbjct: 239 PLL-PHQKQALAWMIAREN-----------SKELPP------FWEQRNDLYYNTIT---N 277
Query: 97 LSPDYTSSYVFGGILADEMGLGKTVELLACIFAH 130
S V GGILAD+MGLGKT+ +A I +
Sbjct: 278 FSVKERPENVHGGILADDMGLGKTLTAIAVILTN 311
>sp|Q9UTL9|YIV5_SCHPO Uncharacterized ATP-dependent helicase C144.05
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC144.05 PE=3 SV=1
Length = 1375
Score = 130 bits (326), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 112/364 (30%), Positives = 180/364 (49%), Gaps = 44/364 (12%)
Query: 247 TGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSS-LSDTSIMDISELVGADIV 305
+ ATLI+ P+ IL QW +EI H SLK Y+G R S+ L I + DIV
Sbjct: 330 SKATLIITPSTILDQWLSEIDLHV--PSLKVFHYQGIRKSNGLKSAKI-----FLDCDIV 382
Query: 306 LTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAA 365
+T+Y L+ +L + E R +R +KR+ + L + WWRIC+DEAQMVE++ +
Sbjct: 383 VTSYSDLRFELLYT----ESHSRTLRHEKRHVSPKSPLIDVCWWRICVDEAQMVETSQSN 438
Query: 366 ATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISR--WWIEVIRDPYENGD 423
+M R+ + W ++GTP++ ++DDL+GLL L+ SP + + W+++I
Sbjct: 439 VAQMIYRIPRVNCWTVSGTPVRSEVDDLFGLLFLLRYSPMYLYKKQAWMQIIEKK----- 493
Query: 424 VGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYA 483
EF F ++CR SK V +EL+LPPQ S +EE YQ + A
Sbjct: 494 -RVREFC-DLFGSLVCRHSKQDVEEELKLPPQHRICMTTRLSVVEETNYQD----LLSEA 547
Query: 484 REVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLR 543
+ + KD RN + + + L++LRQACCHPQVG
Sbjct: 548 AKSLHFFKD----RN--------------LDLCDEESMRRWLVRLRQACCHPQVGFGNKS 589
Query: 544 SLQQSPL-SMDEILMVLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQAVSLYKEAM 602
+ P+ S++++L+ ++ +T RKL + I K+ ++A++++ E
Sbjct: 590 AFGGGPMKSINDVLVFMLEQTNSTFSSLNRKLYSDKIIVGQIYDHIKDYNKALAIWSEVR 649
Query: 603 AVVE 606
VE
Sbjct: 650 IPVE 653
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 57/118 (48%), Gaps = 11/118 (9%)
Query: 33 PDLLPLLRPYQRRAAYWMVQREKGDSASSSERERSQFFSPLCMPMDFLDTYSTLFYNPFS 92
P L L P+Q R WM +RE+ +S++ PL L ++ N
Sbjct: 212 PRLSSELLPFQMRVLEWMKRREEEKFLTSND------LPPLWYHCKSLFDDRMVYVNHVY 265
Query: 93 GSLSLSPDYT----SSYVFGGILADEMGLGKTVELLACIFAHRKPAS-DDSIFIDTAV 145
G ++ S + T S + GGILADEMG+GKT+E+L + H+ P S D+ D V
Sbjct: 266 GYMTFSKEKTYLLASGDIRGGILADEMGMGKTLEVLGLVLHHQLPISLTDTCTFDQVV 323
>sp|Q9FF61|SM3L1_ARATH Putative SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin subfamily A member 3-like 1
OS=Arabidopsis thaliana GN=At5g05130 PE=2 SV=1
Length = 881
Score = 127 bits (318), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 99/335 (29%), Positives = 148/335 (44%), Gaps = 63/335 (18%)
Query: 245 VATGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADI 304
V+ TLIVCP +++ W ++ HT PG LK +Y G + D++EL+ DI
Sbjct: 355 VSQKTTLIVCPPSVISAWITQLEEHTVPGILKVYMYHGGERTD-------DVNELMKYDI 407
Query: 305 VLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAA 364
VLTTY L + S + PV ++ W RI LDEA +++ A
Sbjct: 408 VLTTYGTLAVEESWEDS---------------PV-----KKMEWLRIILDEAHTIKNANA 447
Query: 365 AATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRWWIEVIRDPYENGDV 424
+ + +L A RW +TGTPIQ DLY L+ FL+ PFSI +W +I+ P G+
Sbjct: 448 QQSRVVCKLKASRRWAVTGTPIQNGSFDLYSLMAFLRFEPFSIKSYWQSLIQRPLGQGNK 507
Query: 425 GAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYAR 484
+ I R +K + LPP+ ++ SP E Y G A+
Sbjct: 508 KGLSRLQVLMATISLRRTKEK--SLIGLPPKTVETCYVELSPEERQLYDHME----GEAK 561
Query: 485 EVIQRLKDN-ILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLR 543
V+Q L +N L RN + +L+ +L+LRQ C + LR
Sbjct: 562 GVVQNLINNGSLMRNY-------------------STVLSIILRLRQLCDDMSLCPPELR 602
Query: 544 SLQQSPLSMDEILMVLIGKTKIEGEEALRKLVMAL 578
S S S++++ + E L+KLV AL
Sbjct: 603 SFTTS-TSVEDV---------TDKPELLQKLVAAL 627
>sp|Q95216|HLTF_RABIT Helicase-like transcription factor OS=Oryctolagus cuniculus GN=HLTF
PE=1 SV=1
Length = 1005
Score = 125 bits (315), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 93/302 (30%), Positives = 123/302 (40%), Gaps = 57/302 (18%)
Query: 249 ATLIVCPAPILAQWDAEITRHTRPG-SLKTCIYEGARNSSLSDTSIMDISELVGADIVLT 307
TLI+CP +L+ W + +H + L +Y G I D + L DIVLT
Sbjct: 474 TTLIICPLSVLSNWIDQFGQHIKSDVHLNFYVYYGP-------DRIRDPALLSKQDIVLT 526
Query: 308 TYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAAT 367
TY++L D D + L I W R+ LDE + + A T
Sbjct: 527 TYNILTHDYGTKGD-------------------SPLHSIRWLRVILDEGHAIRNPNAQQT 567
Query: 368 EMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRWWIEVIRDPYENGDVGAM 427
+ L L A+ RW +TGTPIQ L DL+ LL FLK PF WW I+ P GD G +
Sbjct: 568 KAVLDLEAERRWVLTGTPIQNSLKDLWSLLSFLKLKPFVDREWWHRTIQRPVTMGDEGGL 627
Query: 428 EFTHKFFKEIMCR---SSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYAR 484
K I R +SK+ L+LP + + +T S E YQS
Sbjct: 628 RRLQSLIKNITLRRTKTSKIKGKPVLELPERPVFIQHITLSDEERKIYQSVKSE------ 681
Query: 485 EVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQ-----VGS 539
G A+ +N A A +L LL+LRQ CCH V S
Sbjct: 682 ----------------GKATIGRYFNEGTVLAHYADVLGLLLRLRQICCHTHLLTNTVSS 725
Query: 540 SG 541
SG
Sbjct: 726 SG 727
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 64/139 (46%), Gaps = 38/139 (27%)
Query: 37 PLLRPYQRRAAYWMVQREKGDSASSSERERSQFFSPLCMPMDFLDTYSTLFYNPFSGSLS 96
PLL P+Q++A WMV RE + RE F+ + + L+YN + +
Sbjct: 239 PLL-PHQKQALAWMVSRE-------NSRELPPFW----------ELRNDLYYNTIT---N 277
Query: 97 LSPDYTSSYVFGGILADEMGLGKTVELLACIFAHRKPASDDSIFIDTAVQVTDDQKVNLR 156
S V GGILAD+MGLGKT+ +A I + D + + +
Sbjct: 278 FSEKDQPENVHGGILADDMGLGKTLTAIAVILTN----------------FHDGKPLPVE 321
Query: 157 RLKRERVECICGAVSESRK 175
R+K+ +V+ C + SES K
Sbjct: 322 RMKKNQVKKECNS-SESDK 339
>sp|Q14527|HLTF_HUMAN Helicase-like transcription factor OS=Homo sapiens GN=HLTF PE=1
SV=2
Length = 1009
Score = 124 bits (310), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 87/290 (30%), Positives = 120/290 (41%), Gaps = 52/290 (17%)
Query: 249 ATLIVCPAPILAQWDAEITRHTRPG-SLKTCIYEGARNSSLSDTSIMDISELVGADIVLT 307
TLI+CP +L+ W + +H + L +Y G I + + L DIVLT
Sbjct: 477 TTLIICPLSVLSNWIDQFGQHIKSDVHLNFYVYYGP-------DRIREPALLSKQDIVLT 529
Query: 308 TYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAAT 367
TY++L D D + L I W R+ LDE + + A T
Sbjct: 530 TYNILTHDYGTKGD-------------------SPLHSIRWLRVILDEGHAIRNPNAQQT 570
Query: 368 EMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRWWIEVIRDPYENGDVGAM 427
+ L L ++ RW +TGTPIQ L DL+ LL FLK PF WW I+ P GD G +
Sbjct: 571 KAVLDLESERRWVLTGTPIQNSLKDLWSLLSFLKLKPFIDREWWHRTIQRPVTMGDEGGL 630
Query: 428 EFTHKFFKEIMCR---SSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYAR 484
K I R +SK+ L+LP ++ + +T S E YQS
Sbjct: 631 RRLQSLIKNITLRRTKTSKIKGKPVLELPERKVFIQHITLSDEERKIYQSVKNE------ 684
Query: 485 EVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCH 534
G A+ +N A A +L LL+LRQ CCH
Sbjct: 685 ----------------GRATIGRYFNEGTVLAHYADVLGLLLRLRQICCH 718
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 46/94 (48%), Gaps = 21/94 (22%)
Query: 37 PLLRPYQRRAAYWMVQREKGDSASSSERERSQFFSPLCMPMDFLDTYSTLFYNPFSGSLS 96
PLL P+Q++A WMV RE S+ P F + + L+YN + +
Sbjct: 239 PLL-PHQKQALAWMVSREN-----------SKELPP------FWEQRNDLYYNTIT---N 277
Query: 97 LSPDYTSSYVFGGILADEMGLGKTVELLACIFAH 130
S V GGILAD+MGLGKT+ +A I +
Sbjct: 278 FSEKDRPENVHGGILADDMGLGKTLTAIAVILTN 311
>sp|Q4PGG5|RAD5_USTMA DNA repair protein RAD5 OS=Ustilago maydis (strain 521 / FGSC 9021)
GN=RAD5 PE=3 SV=1
Length = 1387
Score = 121 bits (304), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 138/564 (24%), Positives = 215/564 (38%), Gaps = 149/564 (26%)
Query: 32 LPDLLP------LLRPYQRRAAYWMVQREKGDS-------------ASSSERERSQFFSP 72
LP++ P LRPYQ++A WM E + ER+ P
Sbjct: 544 LPEVEPPESFVLTLRPYQKQALGWMKNMEMAPGQSSSSQEQSVTQQGNGDTGERNVSLHP 603
Query: 73 LC----MPMDF----------LDTYSTLFYNPFSGSLSLSPDYTSSYVFGGILADEMGLG 118
L P+D+ L ++NP++G LSL S GGILADEMGLG
Sbjct: 604 LWEEYEFPLDYDNPQANERLILSATRLFYFNPYTGDLSLDFQRASKGSRGGILADEMGLG 663
Query: 119 KTVELLACIFAHRK--PASDDSIFIDTAVQVTDDQKVNLRRLKRERVECICGAVSESRKY 176
KT+ + + + A+R P + I+ V+ G VS RK
Sbjct: 664 KTIMVASLLHANRTSDPGEESEGEINA-------------------VDAAEGDVSTKRK- 703
Query: 177 KGLWVQCDICDAWQHADCVGYSPRGKKRRSTFELKKHTRKKDMTNIVVRDGEHICQWCDE 236
A Q + ++ L K + K ++VV I QW DE
Sbjct: 704 ---------GSAKQTSLASAFAASTSSVDQRKALLKASVSKGKASLVVAPMSLIGQWRDE 754
Query: 237 LIEATDSPVATGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDI 296
LI R + PGSL +Y +DT +
Sbjct: 755 LI-----------------------------RASAPGSLTPVLY-------YADTKGDLL 778
Query: 297 SELVGA--DIVLTTYDVLKEDLSHDSDRHEGDRRFM---RFQKRYPVIPTLLTRIFWWRI 351
++L D+V+T+Y L + RRF+ R+ + L I W R+
Sbjct: 779 AQLESGKVDVVITSYGTLVTEY----------RRFLDGGGASNRHLSVSAPLYCIDWLRV 828
Query: 352 CLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRWW 411
LDEA +++ + L ++ RW +TGTPI +L DL+ LL+FL+ P+ ++
Sbjct: 829 ILDEAHNIKNRSTMNARACCDLVSRRRWALTGTPIINRLTDLFSLLKFLRVEPWGDFSFF 888
Query: 412 IEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDE----LQLPPQEECVSWLTFSPI 467
+ P++ A++ + ++ R K + ++LPP+ V L FS +
Sbjct: 889 NSFVCKPFQAKSTKALDVVQVILESVLLRREKKMKDKDGKPIVELPPKTIVVKELEFSEL 948
Query: 468 EEHFYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLK 527
E Y DN+ +R AS A N +T + + + L++
Sbjct: 949 ERRIY-------------------DNVYRRAYLQFASLKA--NGTVTR-NLSVIFSVLMR 986
Query: 528 LRQACCHP--------QVGSSGLR 543
LRQA CHP +V S G+R
Sbjct: 987 LRQAVCHPSLVLKAGSKVQSGGIR 1010
>sp|P0CQ67|RAD5_CRYNB DNA repair protein RAD5 OS=Cryptococcus neoformans var. neoformans
serotype D (strain B-3501A) GN=RAD5 PE=3 SV=1
Length = 1198
Score = 118 bits (296), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 134/535 (25%), Positives = 211/535 (39%), Gaps = 121/535 (22%)
Query: 29 EEDLPD-LLPLLRPYQRRAAYWMVQREKGDSASSSERE----RSQFFSPLCMPMDFL--- 80
E D P L LRPYQ++A WM REKGDS+ +E F +P + +
Sbjct: 424 EMDPPSTFLYTLRPYQKQALTWMNAREKGDSSVRNESLHPLWEEYLFKKDQLPGEPIEIS 483
Query: 81 ------DTYSTLFYNPFSGSLSLSPDYTSSYVFGGILADEMGLGKTVELLACIFAHR--K 132
D+ ++NP+SG LSL + + GGILAD MG+GKT + + I +R K
Sbjct: 484 DDDEQPDSTRKFYWNPYSGELSLKFPTSQNLSRGGILADAMGMGKTCMMASLIHTNREEK 543
Query: 133 PASDDSIFIDTAVQVTDDQKVNLRRLKRERVECICGAVSESRKYKGLWVQCDICDAWQHA 192
PA NL R+ VE S++ K + Q + + W+
Sbjct: 544 PAG------------------NLESQTRDGVEGEIDEEPASKRIK--FKQVTLSNQWR-- 581
Query: 193 DCVGYSPRGKKRRSTFELKKHTRKKDMTNIVVRDGEHICQWCDELIEATDSPVATGATLI 252
V +P+ ++ R +VV QW DEL
Sbjct: 582 -AVPTAPK---------VESFPR----ATLVVCPVSLAAQWHDEL--------------- 612
Query: 253 VCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVL 312
+ ++ GS+ + ++ G + D E V D+++T+Y L
Sbjct: 613 --------------RKMSQQGSINSYVWYGGDRVDIEALLAGDGKERV--DVIVTSYGTL 656
Query: 313 KEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALR 372
+ ++++R + R L + RI LDEA + + A ++
Sbjct: 657 TSEY----------QKWLRTKDRPNYEGGSLYDHEFLRIVLDEAHNIRNRLAMVSKACYE 706
Query: 373 LYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRWWIEVIRDPYENGDVGAMEFTHK 432
L + RW +TGTPI +L+DLY LL FL+ +P+ ++ + P+ N D A+
Sbjct: 707 LKGQRRWALTGTPIVNRLEDLYSLLHFLRITPWGNYSFFRSFVTVPFLNQDHKALNVVQY 766
Query: 433 FFKEIMCRSSKVHVSDE----LQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREVIQ 488
+ + R K + + LPP+ + L FS E Y+ E
Sbjct: 767 ILESCLLRREKTMRDKDGRLIVDLPPKTVEIKVLQFSRAERQIYKFLEE----------- 815
Query: 489 RLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHP--QVGSSG 541
R K ++ + G A S+ Y I L L+KLRQ HP +G SG
Sbjct: 816 RAKKRFIELDADGRAMSN--YTSI---------LAMLMKLRQCVDHPLLVLGKSG 859
>sp|P0CQ66|RAD5_CRYNJ DNA repair protein RAD5 OS=Cryptococcus neoformans var. neoformans
serotype D (strain JEC21 / ATCC MYA-565) GN=RAD5 PE=3
SV=1
Length = 1198
Score = 117 bits (294), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 134/535 (25%), Positives = 210/535 (39%), Gaps = 121/535 (22%)
Query: 29 EEDLPD-LLPLLRPYQRRAAYWMVQREKGDSASSSERE----RSQFFSPLCMPMDFL--- 80
E D P L LRPYQ++A WM REKGDS+ +E F +P + +
Sbjct: 424 EMDPPSTFLYTLRPYQKQALTWMNAREKGDSSVRNESLHPLWEEYLFKKDQLPGEPIEIS 483
Query: 81 ------DTYSTLFYNPFSGSLSLSPDYTSSYVFGGILADEMGLGKTVELLACIFAHR--K 132
D+ ++NP+SG LSL + + GGILAD MG+GKT + + I +R K
Sbjct: 484 DDDEQPDSTRKFYWNPYSGELSLKFPTSQNLSRGGILADAMGMGKTCMMASLIHTNREEK 543
Query: 133 PASDDSIFIDTAVQVTDDQKVNLRRLKRERVECICGAVSESRKYKGLWVQCDICDAWQHA 192
PA NL R+ VE S++ K + Q + + W+
Sbjct: 544 PAG------------------NLESQTRDGVEGEIDEEPASKRIK--FKQVTLSNQWR-- 581
Query: 193 DCVGYSPRGKKRRSTFELKKHTRKKDMTNIVVRDGEHICQWCDELIEATDSPVATGATLI 252
V +P+ ++ R +VV QW DEL
Sbjct: 582 -AVPTAPK---------VESFPR----ATLVVCPVSLAAQWHDEL--------------- 612
Query: 253 VCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVL 312
+ ++ GS+ + ++ G + D E V D+++T+Y L
Sbjct: 613 --------------RKMSQQGSINSYVWYGGDRVDIEALLAGDGKERV--DVIVTSYGTL 656
Query: 313 KEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALR 372
+ ++++R + R L + RI LDEA + + A ++
Sbjct: 657 TSEY----------QKWLRTKDRPNYEGGSLYDHEFLRIVLDEAHNIRNRLAMVSKACYE 706
Query: 373 LYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRWWIEVIRDPYENGDVGAMEFTHK 432
L + RW +TGTPI +L+DLY LL FL+ +P+ ++ + P+ N D A+
Sbjct: 707 LKGQRRWALTGTPIVNRLEDLYSLLHFLRITPWGNYSFFRSFVTVPFLNQDHKALNVVQY 766
Query: 433 FFKEIMCRSSKVHVSDE----LQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREVIQ 488
+ + R K + + LPP+ + L FS E Y+ E
Sbjct: 767 ILESCLLRREKTMRDKDGRLIVDLPPKTVEIKVLQFSRAERQIYKFLEE----------- 815
Query: 489 RLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHP--QVGSSG 541
R K + + G A S+ Y I L L+KLRQ HP +G SG
Sbjct: 816 RAKKRFIDLDADGRAMSN--YTSI---------LAMLMKLRQCVDHPLLVLGKSG 859
>sp|Q753V5|RAD5_ASHGO DNA repair protein RAD5 OS=Ashbya gossypii (strain ATCC 10895 / CBS
109.51 / FGSC 9923 / NRRL Y-1056) GN=RAD5 PE=3 SV=2
Length = 1085
Score = 112 bits (281), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 81/305 (26%), Positives = 137/305 (44%), Gaps = 44/305 (14%)
Query: 236 ELIEATDSPVATGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMD 295
EL +T P TLIV P +L QW E R L +Y ++S+ +
Sbjct: 500 ELGISTVKPYTASTTLIVVPMSLLPQWRNEFVRVNDGNGLYCEVYYAG---NVSNLRTLL 556
Query: 296 ISELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDE 355
+ + +VLTTY V++ + S + +F Y L + ++RI LDE
Sbjct: 557 VKQKSPPSVVLTTYGVVQTEWS----------KLQQFD--YEASNEGLFSVEFFRIILDE 604
Query: 356 AQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRWWIEVI 415
+ + ++ + L ++ +W +TGTPI +LDDL+ L++F+ P+ +W + +
Sbjct: 605 GHNIRNRTTKTSKAVMALTSRRKWVLTGTPIMNRLDDLFSLIKFMNFEPWCKIDYWRQFV 664
Query: 416 RDPYENGDV-GAMEFTHKFFKEIMCRSSKVHVSDE-----LQLPPQEECVSWLTFSPIEE 469
DP+E D A+E I+ R +K ++ DE +QLPP+E + + FS E
Sbjct: 665 SDPFEKKDYSSALEVIQAVMGPILLRRTK-NMKDEDGNPLVQLPPKEVVIEMIRFSDTEA 723
Query: 470 HFYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLR 529
Y+ +E + R ++LK+ Y+ I+ H +L+LR
Sbjct: 724 GLYKYFLSKAEHSVKESLAR--GDLLKK-----------YSTILLH---------ILRLR 761
Query: 530 QACCH 534
Q CCH
Sbjct: 762 QVCCH 766
Score = 47.0 bits (110), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 51/110 (46%), Gaps = 21/110 (19%)
Query: 39 LRPYQRRAAYWMVQREK-------GDSASSSERERSQFFSPLCMPMDFL------DTYST 85
LR YQ++ WM+ RE+ G + ++ + P D TY +
Sbjct: 365 LRRYQKQGLTWMLLREREHAILEPGSQDALADGPMDPMWRMFKWPRDTSWDVSRGTTYVS 424
Query: 86 L-------FY-NPFSGSLSLSPDYTSSYVFGGILADEMGLGKTVELLACI 127
L FY N +G SL + S + GGILADEMGLGKT+ +LA I
Sbjct: 425 LEADIPDKFYANLHTGEFSLVKPISKSILKGGILADEMGLGKTISILALI 474
>sp|Q4IJ84|RAD5_GIBZE DNA repair protein RAD5 OS=Gibberella zeae (strain PH-1 / ATCC
MYA-4620 / FGSC 9075 / NRRL 31084) GN=RAD5 PE=3 SV=1
Length = 1154
Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/295 (26%), Positives = 138/295 (46%), Gaps = 38/295 (12%)
Query: 246 ATGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIV 305
A TL+V P +L+QW +E + ++ G++KT +Y G SS + D+V
Sbjct: 570 APCTTLVVAPMSLLSQWQSEAEKASKDGTMKTELYYGNEKSSNLQALCCASNAANAPDLV 629
Query: 306 LTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAA 365
+T+Y V+ + S + R+ GD+ F L + ++RI +DEA +++ ++
Sbjct: 630 ITSYGVVLSEFSSLAARN-GDKSFH----------NGLFSLRFFRIIIDEAHHIKNRSSK 678
Query: 366 ATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRWWIEVIRDPYENGD-V 424
++ + A HRW +TGTPI KL+DL+ L+RFL P++ +W I P+E+GD +
Sbjct: 679 TSKACYEISATHRWALTGTPIVNKLEDLFSLVRFLGVEPWNNFSFWRTFITVPFESGDFM 738
Query: 425 GAMEFTHKFFKEIMCRSSKVHVSDE----LQLPPQEECVSWLTFSPIEEHFYQSQHETCV 480
A++ + ++ R +K + + + LPP++ + + S E Y
Sbjct: 739 RALDVVQTVLEPLVLRRTKDMKTPDGEPLVLLPPKQIEIVNVELSETERDVYNYIF---- 794
Query: 481 GYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHP 535
N KR + + + T + +L+LRQ+CCHP
Sbjct: 795 ------------NKAKRTFSQNVEAGTVMKAFTT------IFAQILRLRQSCCHP 831
Score = 67.8 bits (164), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 54/101 (53%), Gaps = 9/101 (8%)
Query: 39 LRPYQRRAAYWMVQREKGDSASSSERERSQFFSPLCMPMDFLD--------TYSTLFYNP 90
LR YQ++A +WM+ +EK D S E + P+ +D S + NP
Sbjct: 438 LRKYQKQALHWMMAKEK-DEKSHREPLMHPLWEQYEWPLKDVDENDLPQIEGQSKFYVNP 496
Query: 91 FSGSLSLSPDYTSSYVFGGILADEMGLGKTVELLACIFAHR 131
+SG LSL + GGILADEMGLGKT+++L+ + HR
Sbjct: 497 YSGDLSLDFPVQEQHCLGGILADEMGLGKTIQMLSLVHTHR 537
>sp|P36607|RAD5_SCHPO DNA repair protein rad5 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=rad8 PE=1 SV=1
Length = 1133
Score = 111 bits (278), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 83/315 (26%), Positives = 138/315 (43%), Gaps = 52/315 (16%)
Query: 231 CQWCDELIEA-----TDSPVATGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARN 285
C DE+ EA PVA+ TL+V P +L QW +E + ++ ++ IY G+
Sbjct: 548 CFSTDEIPEAFRHSKPSLPVASRTTLVVAPMSLLDQWHSEACKVSQGTKFRSMIYYGSEK 607
Query: 286 SSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTR 345
+ ++D S I++T+Y VL + S S H L
Sbjct: 608 PLDLKSCVIDTS--TAPLIIITSYGVLLSEFSQQS--HSSG----------------LFS 647
Query: 346 IFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPF 405
+ W+R+ LDE + + + + + +++RW ITGTPI KLDDLY L++F++ P+
Sbjct: 648 VHWFRVVLDEGHNIRNRESKTAKACHSISSQNRWVITGTPIVNKLDDLYSLIKFMRYEPW 707
Query: 406 SISRWWIEVIRDPYENGDV-GAMEFTHKFFKEIMCRSSKV----HVSDELQLPPQEECVS 460
+W + PY++ DV A+ + ++ R +K + + + LPP+ +
Sbjct: 708 CNYTYWQTFVSLPYQSKDVLKALNVVQSILEFLVLRRTKETKDRNGNSIVTLPPKTVKIE 767
Query: 461 WLTFSPIEEHFYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAK 520
+L FS E Y S + K V + + L+ T
Sbjct: 768 YLDFSDSERKIYDSLYTKA----------------KSTVNANIVAGTLFRNYTT------ 805
Query: 521 LLNSLLKLRQACCHP 535
+L LL+LRQACC P
Sbjct: 806 ILGLLLRLRQACCDP 820
Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 57/105 (54%), Gaps = 12/105 (11%)
Query: 39 LRPYQRRAAYWMVQREKGDSASSSERERSQFFSPLCMPMD-----FL----DTYSTLFY- 88
LR YQ++A YWM +E+G + S + +S P D F D +T FY
Sbjct: 445 LREYQKQALYWMCCKEEGVQSDGSAPKLHPLWSRFRFPKDSEFPEFFKCSSDDDNTHFYV 504
Query: 89 NPFSGSLSLSPDYTSSYVFGGILADEMGLGKTVELLACIFAHRKP 133
N ++G ++ + Y GGILADEMGLGKT+E+L+ I H +P
Sbjct: 505 NLYTGETTMLFPNSMPYHRGGILADEMGLGKTIEVLSLI--HSRP 547
>sp|P34739|TTF2_DROME Transcription termination factor 2 OS=Drosophila melanogaster
GN=lds PE=1 SV=2
Length = 1061
Score = 110 bits (276), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 90/317 (28%), Positives = 138/317 (43%), Gaps = 68/317 (21%)
Query: 248 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLT 307
G TL+VCPA +L QW++E+ L C++ G N + D DIV+T
Sbjct: 525 GGTLVVCPASLLRQWESEVESKVSRQKLTVCVHHG-NNRETKGKYLRDY------DIVVT 577
Query: 308 TYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIF---WWRICLDEAQMVESNAA 364
TY ++ + H S L+ +F W RI LDEA +V ++ +
Sbjct: 578 TYQIVARE--HKS----------------------LSAVFGVKWRRIILDEAHVVRNHKS 613
Query: 365 AATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRWWIEVIRDPYENGDV 424
++ L K+RW +TGTPIQ K D+Y LL+FL+ SPF W + I +N
Sbjct: 614 QSSLAVCDLRGKYRWALTGTPIQNKELDVYALLKFLRCSPFDDLHTWKKWI----DNKSA 669
Query: 425 GAMEFTHKFFKEIMCRSSKVHVSDELQ---LPPQEECVSWLTFSPIEEHFYQSQHETCVG 481
G + K +M R +K + + + LP +E + ++ E + YQ T +
Sbjct: 670 GGQNRLNLLMKSLMLRRTKAQLQSDGKLNSLPNKELRLIEISLDKEEMNVYQ----TVMT 725
Query: 482 YAREVIQRLKDNILKRNVPGHASSDA---LYNPI--------ITHAEAAKLLNS------ 524
Y+R + + +R + SDA YN I H + A++ S
Sbjct: 726 YSRTLFAQFLHQRAERETDFNYRSDANKPTYNQIKDPNGAYYKMHEKFARMAGSKKEVKS 785
Query: 525 ------LLKLRQACCHP 535
LL+LRQ CCHP
Sbjct: 786 HDILVLLLRLRQICCHP 802
>sp|P32849|RAD5_YEAST DNA repair protein RAD5 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RAD5 PE=1 SV=1
Length = 1169
Score = 110 bits (276), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 77/303 (25%), Positives = 138/303 (45%), Gaps = 41/303 (13%)
Query: 244 PVATGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGAD 303
P A+ TLIV P +L QW E T+ + +Y G ++S +
Sbjct: 582 PYASKTTLIVVPMSLLTQWSNEFTKANNSPDMYHEVYYGG---NVSSLKTLLTKTKTPPT 638
Query: 304 IVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA 363
+VLTTY +++ + + S D I + L + ++RI +DE + +
Sbjct: 639 VVLTTYGIVQNEWTKHSKGRMTDEDVN--------ISSGLFSVNFYRIIIDEGHNIRNRT 690
Query: 364 AAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRWWIEVIRDPYENGD 423
++ + L K +W +TGTPI +LDDLY L++FL+ P+ +W + P+E+ +
Sbjct: 691 TVTSKAVMALQGKCKWVLTGTPIINRLDDLYSLVKFLELDPWRQINYWKTFVSTPFESKN 750
Query: 424 VG-AMEFTHKFFKEIMCRSSKVHVSDE-----LQLPPQEECVSWLTFSPIEEHFYQSQHE 477
A + + + ++ R +K + D+ ++LPP+E + L FS ++ Y+ +
Sbjct: 751 YKQAFDVVNAILEPVLLRRTK-QMKDKDGKPLVELPPKEVVIKRLPFSKSQDLLYKFLLD 809
Query: 478 TCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQ- 536
+ I R ++LK+ Y+ I+ H +L+LRQ CCHP
Sbjct: 810 KAEVSVKSGIAR--GDLLKK-----------YSTILVH---------ILRLRQVCCHPGL 847
Query: 537 VGS 539
+GS
Sbjct: 848 IGS 850
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 64/135 (47%), Gaps = 23/135 (17%)
Query: 39 LRPYQRRAAYWMVQREKGDSASSSERERSQFFSPLCMPM-------------------DF 79
LR YQ++ WM++RE+ + ++S+ E S+ + + P+ D
Sbjct: 437 LRNYQKQGLTWMLRREQEFAKAASDGEASETGANMINPLWKQFKWPNDMSWAAQNLQQDH 496
Query: 80 LDTYSTLFY--NPFSGSLSLSPDYTSSYVFGGILADEMGLGKTVELLACIFA--HRKPAS 135
++ +F+ N SG SL+ + + GGIL+DEMGLGKTV + + + H
Sbjct: 497 VNVEDGIFFYANLHSGEFSLAKPILKTMIKGGILSDEMGLGKTVAAYSLVLSCPHDSDVV 556
Query: 136 DDSIFIDTAVQVTDD 150
D +F V+D+
Sbjct: 557 DKKLFDIENTAVSDN 571
>sp|Q6FY76|RAD5_CANGA DNA repair protein RAD5 OS=Candida glabrata (strain ATCC 2001 / CBS
138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=RAD5 PE=3
SV=1
Length = 1151
Score = 110 bits (276), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 84/303 (27%), Positives = 136/303 (44%), Gaps = 42/303 (13%)
Query: 238 IEATDSPVATGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDIS 297
I+ + A TLI+ P +L QW E + L +Y G SSL + I
Sbjct: 557 IKEPERSYAYKTTLIIVPMSLLTQWRDEFDKVNNNAGLTCELYYGGNVSSLKS---LLIK 613
Query: 298 ELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQ 357
+VLTTY +++ + + S R R + I ++RI LDE
Sbjct: 614 RKNPPTVVLTTYGIVQNEWTKLSKDGTNIRSLGRTSGIF--------SIEFFRIILDEGH 665
Query: 358 MVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRWWIEVIRD 417
+ + + ++ L L +K+RW +TGTPI +LDDLY L++FLK P+S +W + I +
Sbjct: 666 TIRNKSTITSKAVLELSSKYRWILTGTPIINRLDDLYSLVKFLKLEPWSQIGYWKQFITN 725
Query: 418 PYENGDVG-AMEFTHKFFKEIMCRSSKVHVSDE----LQLPPQEECVSWLTFSPIEEHFY 472
P+E + A + + + ++ R +K + +QLPP+E + L S ++ Y
Sbjct: 726 PFEERNFKQAFDVVNAIMEPVLLRRTKQMKDTDGNPLVQLPPKEIVIEKLQLSKKQKLIY 785
Query: 473 QSQHETCVGYAREVIQRLKDNILKRNVPGHASSDAL--YNPIITHAEAAKLLNSLLKLRQ 530
+ E +QR + K G S D L Y+ I+ H +L+LRQ
Sbjct: 786 E-----------EFLQRAE----KTFRSGLQSGDLLKKYSTILVH---------ILRLRQ 821
Query: 531 ACC 533
CC
Sbjct: 822 VCC 824
Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 70/153 (45%), Gaps = 26/153 (16%)
Query: 33 PDLLPL-LRPYQRRAAYWMVQREKGDSASSSERERSQFFSPLCMPM-------------- 77
P+L+ + LR YQ++ WM++RE G S ++S+ + L P+
Sbjct: 411 PELVKVELRKYQKQGLTWMLRRE-GISIGHDNEDKSEDDTTLLNPLWRQFQWPRNMSWHN 469
Query: 78 -------DFLDTYSTLFY-NPFSGSLSLSPDYTSSYVFGGILADEMGLGKTVELLACIFA 129
D + FY N +G SL +S+ GGIL+DEMGLGKT+ L+ +
Sbjct: 470 QSTGSENDNSNPKLIFFYGNLHTGEFSLERPTMNSFKNGGILSDEMGLGKTISALSLVLM 529
Query: 130 HRKP--ASDDSIFIDTAVQVTDDQKVNLRRLKR 160
K + S+F + ++ D + ++ +R
Sbjct: 530 RPKDEHTTSQSLFHQESSNLSSDDVIEIKEPER 562
>sp|Q6CJM4|RAD5_KLULA DNA repair protein RAD5 OS=Kluyveromyces lactis (strain ATCC 8585 /
CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)
GN=RAD5 PE=3 SV=1
Length = 1114
Score = 110 bits (275), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 84/328 (25%), Positives = 137/328 (41%), Gaps = 65/328 (19%)
Query: 246 ATGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELV----G 301
A TLIV P +L QW +E + + + IY G +I D+ V
Sbjct: 542 AYRTTLIVVPMSLLNQWQSEFEKANKDLKKRCEIYYG--------NNIKDLRAYVLGPNA 593
Query: 302 ADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVES 361
+++TTY +++ + S + L + ++RI LDE + +
Sbjct: 594 PSVIITTYGIIQSEYGRTST-------------------SGLFNVVFFRIILDEGHTIRN 634
Query: 362 NAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRWWIEVIRDPYEN 421
+ ++ + L + +W +TGTPI +LDDL+ L++FL P+S +W + P+E
Sbjct: 635 RSTRTSKAVIALRSSRKWILTGTPIINRLDDLFSLVQFLNLEPWSHINYWKRYVSVPFEK 694
Query: 422 GDVG-AMEFTHKFFKEIMCRSSK----VHVSDELQLPPQEECVSWLTFSPIEEHFYQSQH 476
G+ A + + + ++ R +K V + LPP+E V L S E+ YQS
Sbjct: 695 GNYAQAFDVINAVLEPVLLRRTKNMKDVDGKPLVSLPPKEVIVEKLQLSSSEKRVYQSML 754
Query: 477 ETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCH-- 534
E +E G A D L N +L +L+LRQ CCH
Sbjct: 755 EDAENSVKE---------------GLAKGDLLKN-------YTNILVHILRLRQVCCHLD 792
Query: 535 -----PQVGSSGLRSLQQSPLSMDEILM 557
P +G L L+ S ++ ILM
Sbjct: 793 LLKKTPDLGDPDLEDLENSTQNISSILM 820
Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 52/117 (44%), Gaps = 17/117 (14%)
Query: 28 LEEDLPD--LLPL-LRPYQRRAAYWMVQRE--------KGDSASSSERERSQFFSPLCMP 76
L E PD L L LR YQ+++ WM++RE K S + + P
Sbjct: 382 LPETTPDESLFKLQLRRYQKQSLSWMLKREYEYSHLSEKAAEVSIDGNSMNPLWKKFRWP 441
Query: 77 MDFLDTYST-----LFY-NPFSGSLSLSPDYTSSYVFGGILADEMGLGKTVELLACI 127
+ FY N ++G S+ + + GGILADEMGLGKT+ LA I
Sbjct: 442 SNSKQGTPNHEDDCFFYANLYTGEFSIEKPVIKTIINGGILADEMGLGKTISALALI 498
>sp|Q6BIP2|RAD5_DEBHA DNA repair protein RAD5 OS=Debaryomyces hansenii (strain ATCC 36239
/ CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=RAD5
PE=3 SV=2
Length = 1190
Score = 108 bits (269), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 82/305 (26%), Positives = 138/305 (45%), Gaps = 44/305 (14%)
Query: 246 ATGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIV 305
A+ TLI+ P +L+QW E + + K IY G +S+ +D S + ++ IV
Sbjct: 580 ASKTTLIIVPMSLLSQWQKEFDKANNNSNHKCFIYYG--DSATTDLSPVLCNKKKDIPIV 637
Query: 306 L-TTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAA 364
+ TTY + + + S+R + + F+ P I + F RI LDE + + A
Sbjct: 638 MITTYGTVLNEFTRISNRRDA-KGFL------PKIGLFSVKFF--RIVLDEGHNIRNRTA 688
Query: 365 AATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRWWIEVIRDPYENGDV 424
++ + + +W +TGTP+ +LDDLY L++FL+ P+S +W + P+E +
Sbjct: 689 KTSKAIYEILSNRKWVLTGTPVINRLDDLYSLVKFLELEPWSNFSYWKTFVTLPFEQRKI 748
Query: 425 G-AMEFTHKFFKEIMCRSSKVHVSDE----LQLPPQEECVSWLTFSPIEEHFYQSQHETC 479
++ + I R +K ++LPP+E + + F+ +EE Y
Sbjct: 749 SQTLDVVKSILEPIFIRRTKNMKQSNGKPLVELPPKEVVIEEVKFNEVEEKLYN------ 802
Query: 480 VGYAREVIQRLKDNILKRNVPGHASSDAL--YNPIITHAEAAKLLNSLLKLRQACCHPQ- 536
+ Q KD G S D Y+ I+TH +L+LRQ CCH
Sbjct: 803 -WFKARASQSFKD--------GIKSGDLFKKYSQILTH---------ILRLRQVCCHVDL 844
Query: 537 VGSSG 541
VGS+
Sbjct: 845 VGSAN 849
Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 59/151 (39%), Gaps = 52/151 (34%)
Query: 39 LRPYQRRAAYWMVQREK-----------------------GDSASSSERERSQFFSPLC- 74
LR YQ+ WM+ RE+ D A+ ER + F +PL
Sbjct: 432 LRKYQKHGLSWMLTREREIAVLETLSKNDDDDNDNDILTTQDKANIQERNDA-FMNPLWD 490
Query: 75 ---MPMD--------------FLDTYSTLFYNPFSGSLSLSPDYTSSYVFGGILADEMGL 117
P D D Y + N ++G LSL+ S V GGILADEMGL
Sbjct: 491 IFEWPKDTSMHKSESSPTEDRMDDNY--FYANMYNGELSLTKPVIRSMVKGGILADEMGL 548
Query: 118 GKTVELLACI--------FAHRKPASDDSIF 140
GKT+ LA I F K D +I+
Sbjct: 549 GKTISTLALINSVPIDVMFEENKELEDKTIY 579
>sp|Q7S1P9|RAD5_NEUCR DNA repair protein rad-5 OS=Neurospora crassa (strain ATCC 24698 /
74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=rad-5
PE=3 SV=2
Length = 1222
Score = 108 bits (269), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 77/295 (26%), Positives = 138/295 (46%), Gaps = 38/295 (12%)
Query: 246 ATGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIV 305
A TL+V P +LAQW +E ++ G+ KT +Y GA + T + + D++
Sbjct: 632 APCTTLVVAPMSLLAQWQSEAENASKEGTFKTMMYYGAEKNVDLVTMCCEANAANAPDVI 691
Query: 306 LTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAA 365
+T+Y V+ + + + ++ GDR R L + ++R+ LDEA +++ A
Sbjct: 692 ITSYGVVLSEFTQLATKN-GDRLSSRG----------LFSLNFFRVILDEAHNIKNRQAK 740
Query: 366 ATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRWWIEVIRDPYENGD-V 424
+ + A+HRW +TGTPI +L+DL+ L+RFL+ P++ +W I P+E+ + V
Sbjct: 741 TSRACYEIAAEHRWVLTGTPIVNRLEDLFSLVRFLRVEPWNNFSFWRTFITVPFESKNFV 800
Query: 425 GAMEFTHKFFKEIMCRSSKVHVSDELQ----LPPQEECVSWLTFSPIEEHFYQSQHETCV 480
A++ + ++ R +K + + Q LPP+ + + S E Y
Sbjct: 801 RALDVVQTVLEPLVMRRTKDMKTPDGQFLVPLPPKHIEIVDIELSEPERAVYDY------ 854
Query: 481 GYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHP 535
V R K + D + + A + + +L+LRQ+CCHP
Sbjct: 855 -----VFNRAKRTLF----------DNMQAGTVMKAFTS-IFAQILRLRQSCCHP 893
Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 52/101 (51%), Gaps = 8/101 (7%)
Query: 39 LRPYQRRAAYWMVQREKGDSASSSERERSQFFSPLCMP--------MDFLDTYSTLFYNP 90
LRPYQ+++ YWM+ +EK E + P + + + NP
Sbjct: 499 LRPYQKQSLYWMLAKEKNQRTEDRETSMHPLWEEYVWPTKDHDDKDLPVVPDQPCFYVNP 558
Query: 91 FSGSLSLSPDYTSSYVFGGILADEMGLGKTVELLACIFAHR 131
+SG LSL + GGILADEMGLGKT+++L+ I +HR
Sbjct: 559 YSGDLSLDFPKQEQHCLGGILADEMGLGKTIQMLSLIHSHR 599
>sp|Q9UNY4|TTF2_HUMAN Transcription termination factor 2 OS=Homo sapiens GN=TTF2 PE=1
SV=2
Length = 1162
Score = 107 bits (266), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 90/321 (28%), Positives = 137/321 (42%), Gaps = 45/321 (14%)
Query: 249 ATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTT 308
TLI+CPA ++ W E+ + L+ +Y G S + L DIV+TT
Sbjct: 643 GTLIICPASLIHHWKNEVEKRVNSNKLRVYLYHGPNRDSRARV-------LSTYDIVITT 695
Query: 309 YDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATE 368
Y ++ +++ + E + + T L RI W RI LDEA V++ +
Sbjct: 696 YSLVAKEIPTNKQEAEIPGANLNVEG----TSTPLLRIAWARIILDEAHNVKNPRVQTSI 751
Query: 369 MALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRWWIEVIRDPYENGDVGAME 428
+L A RW +TGTPIQ L D+Y LL+FL+ SPF W R +NG E
Sbjct: 752 AVCKLQACARWAVTGTPIQNNLLDMYSLLKFLRCSPFDEFNLW----RSQVDNGSKKGGE 807
Query: 429 FTHKFFKEIMCRSSKVHVSDE----LQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYAR 484
K ++ R +K + + LP ++ + L S EE Y V +AR
Sbjct: 808 RLSILTKSLLLRRTKDQLDSTGRPLVILPQRKFQLHHLKLSEDEETVYN------VFFAR 861
Query: 485 EVIQRLKDNILKRNVPGHASSDALYNPI-----------ITHAEAA--------KLLNSL 525
L+ + + G+ S + NP H+EAA +L+ L
Sbjct: 862 SR-SALQSYLKRHESRGNQSGRSPNNPFSRVALEFGSEEPRHSEAADSPRSSTVHILSQL 920
Query: 526 LKLRQACCHPQVGSSGLRSLQ 546
L+LRQ CCH + S L ++
Sbjct: 921 LRLRQCCCHLSLLKSALDPME 941
Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 19/24 (79%)
Query: 108 GGILADEMGLGKTVELLACIFAHR 131
GGILAD+MGLGKT+ ++A I +
Sbjct: 591 GGILADDMGLGKTLTMIALILTQK 614
>sp|P31244|RAD16_YEAST DNA repair protein RAD16 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RAD16 PE=1 SV=1
Length = 790
Score = 104 bits (260), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 79/261 (30%), Positives = 122/261 (46%), Gaps = 51/261 (19%)
Query: 250 TLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTY 309
+L+V P L QW EI +HT+ G LK IY GA ++ DI +L G D+VLTTY
Sbjct: 233 SLVVAPTVALMQWKNEIEQHTK-GQLKIYIYHGASRTT-------DIKDLQGYDVVLTTY 284
Query: 310 DVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEM 369
VL+ S ++ G RR K+ P++L I ++R+ LDEA ++ +
Sbjct: 285 AVLE---SVFRKQNYGFRRKNGLFKQ----PSVLHNIDFYRVILDEAHNIKDRQSNTARA 337
Query: 370 ALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFS---------ISRWWIEVIRDPYE 420
L + RWC++GTP+Q ++ ++Y L+RFL +PF+ S+ W R +
Sbjct: 338 VNNLKTQKRWCLSGTPLQNRIGEMYSLIRFLNINPFTKYFCTKCDCASKDWKFTDRMHCD 397
Query: 421 NGDVGAMEFTHKF---------------------------FKEIMCRSSKVHVSDELQLP 453
+ M+ T+ F K IM R +KV +D+L LP
Sbjct: 398 HCSHVIMQHTNFFNHFMLKNIQKFGVEGPGLESFNNIQTLLKNIMLRRTKVERADDLGLP 457
Query: 454 PQEECVSWLTFSPIEEHFYQS 474
P+ V F+ E+ Y+S
Sbjct: 458 PRIVTVRRDFFNEEEKDLYRS 478
>sp|Q5BHD6|RAD5_EMENI DNA repair protein rad5 OS=Emericella nidulans (strain FGSC A4 /
ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=rad5 PE=3
SV=1
Length = 1202
Score = 103 bits (256), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 73/288 (25%), Positives = 131/288 (45%), Gaps = 32/288 (11%)
Query: 250 TLIVCPAPILAQWDAEITRHTRPGSLKTCIYEG-ARNSSLSDTSIMDISELVGADIVLTT 308
TL+V P +LAQW+ E + +R GS+K +Y G +N +L + + +++LT+
Sbjct: 561 TLVVAPMSLLAQWEGEALKASRNGSMKVLMYYGNEKNVNLRE--MCSAGNAAAPNMILTS 618
Query: 309 YDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATE 368
Y V+ + R P L + ++R+ LDEA ++++ +
Sbjct: 619 YGVVMSE----------HRTHQALAPGTSWTPGNLFSVDFFRVILDEAHIIKNRRSKTAR 668
Query: 369 MALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRWWIEVIRDPYENGD-VGAM 427
L A HRW +TGTPI +L+DL+ L+RFL+ P++ +W I P+E+ + V A+
Sbjct: 669 ACYDLKATHRWVLTGTPIVNRLEDLFSLVRFLRVEPWNNFSFWKTFITAPFESKEVVRAI 728
Query: 428 EFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREVI 487
+ ++ R +K ++ P E V P+ + + + + RE+
Sbjct: 729 SVVQTVLEPLVLRRTK-----SMKTPEGEPLV------PLPKRTIRIEKVELIEQEREIY 777
Query: 488 QRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHP 535
+ K+ + ++ L T + LL+LRQ CCHP
Sbjct: 778 NHIYTRA-KQTFNSNVAAGTLLKSYST------IFAQLLRLRQTCCHP 818
Score = 70.5 bits (171), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 55/101 (54%), Gaps = 9/101 (8%)
Query: 39 LRPYQRRAAYWMVQREKGDSASSSERERSQFFSPLCMPMD--------FLDTYSTLFYNP 90
LR YQ++A YWM+ +EK D S E + P+ ++ + + NP
Sbjct: 436 LRKYQKQALYWMLSKEK-DKKSGREVSIHPLWEEYDWPLKDVDDKDLPIIEGINHFYVNP 494
Query: 91 FSGSLSLSPDYTSSYVFGGILADEMGLGKTVELLACIFAHR 131
+SG LSL + GGILADEMGLGKT+E+L+ + +HR
Sbjct: 495 YSGELSLDFPAQEQHCLGGILADEMGLGKTIEMLSLVHSHR 535
>sp|Q5NC05|TTF2_MOUSE Transcription termination factor 2 OS=Mus musculus GN=Ttf2 PE=1
SV=2
Length = 1138
Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 87/318 (27%), Positives = 134/318 (42%), Gaps = 40/318 (12%)
Query: 238 IEATDSPVATGA-TLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDI 296
+ DS V T + TLIVCPA ++ W E+ + L+ +Y G S +
Sbjct: 607 LSKNDSSVFTSSGTLIVCPASLIHHWKNEVEKRVTSNRLRIYLYHGPNRSRHAKV----- 661
Query: 297 SELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEA 356
L DIV+TTY +L +++ + + EG+ P L ++ W RI LDEA
Sbjct: 662 --LSTYDIVITTYSLLAKEIP--TTKQEGEVPGANLSVEGTSAPLL--QVVWARIILDEA 715
Query: 357 QMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRWWIEVIR 416
V++ + +L A+ RW +TGTPIQ L D+Y L++FL+ SPF W +
Sbjct: 716 HNVKNPRVQTSIAVCKLQAQARWAVTGTPIQNNLLDMYSLMKFLRCSPFDEFSLW----K 771
Query: 417 DPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDE----LQLPPQEECVSWLTFSPIEEHFY 472
+NG + E K ++ R +K + + LP + + L S E Y
Sbjct: 772 SQVDNGSMKGGERLSILTKSLLLRRTKDQLDSTGKPLVALPARRCQLHRLKLSEDERAVY 831
Query: 473 QSQHETCVGYAREVIQ--------------RLKDNILKRNVPGHASSDALYNPII--THA 516
+ + +R +Q R DN R SS + P
Sbjct: 832 ----DIFLARSRSALQSYLKRQEGRGSHHGRSPDNPFSRVAQEFGSSVSQGCPAADSQRP 887
Query: 517 EAAKLLNSLLKLRQACCH 534
+L+ LL+LRQ CCH
Sbjct: 888 STVHVLSQLLRLRQCCCH 905
Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 19/24 (79%)
Query: 108 GGILADEMGLGKTVELLACIFAHR 131
GGILAD+MGLGKT+ ++A I +
Sbjct: 567 GGILADDMGLGKTLTMIALILTKK 590
>sp|O13762|YF2C_SCHPO Uncharacterized ATP-dependent helicase C17A2.12
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC17A2.12 PE=3 SV=1
Length = 897
Score = 102 bits (255), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 86/308 (27%), Positives = 131/308 (42%), Gaps = 52/308 (16%)
Query: 249 ATLIVCPAPILAQWDAEITRHTRPGS-LKTCIYEGARNSSLSDTSIMDISELVGADIVLT 307
LIV +L QW E++ P L I+ G+ +L D EL D+VLT
Sbjct: 302 TNLIVVSVALLHQWAEELSTKVHPSKKLSVYIHHGSTKKNL------DSYELSQYDVVLT 355
Query: 308 TYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTL-----LTRIFWWRICLDEAQMVESN 362
TY +L ++ + F P T L W+RI LDEA + +
Sbjct: 356 TYSMLAYEMKQND----------AFNNNNPATATPPPACSLLETSWYRIVLDEAHTIRNR 405
Query: 363 AAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRWWIEVIRDPYENG 422
A + ++L AK+RWC++GTPIQ +D+ Y LL+FL+ P+ + + + I P ++
Sbjct: 406 DTLAAKCCVKLDAKYRWCLSGTPIQNHIDEFYSLLKFLRIKPYCVWSLFAKDISRPLKSY 465
Query: 423 DVGAMEFTHKFFKEIMC-------RSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQ 475
+E K + ++ + ++V+ + LPP+ + P E Y Q
Sbjct: 466 RADIVEAALKRLRILLASTVFRRTKETRVNNLPIVNLPPKTIRTVSVNLLPEERALYNEQ 525
Query: 476 HETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHP 535
+ Q L DN + H S + LL SLL+LRQ CCHP
Sbjct: 526 MSSA--------QSLVDNYFNND---HDLSRYGF-----------LLVSLLRLRQFCCHP 563
Query: 536 Q-VGSSGL 542
V SS L
Sbjct: 564 WLVKSSSL 571
>sp|Q10332|YBMA_SCHPO Uncharacterized ATP-dependent helicase C582.10c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC582.10c PE=1 SV=1
Length = 830
Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 80/301 (26%), Positives = 132/301 (43%), Gaps = 49/301 (16%)
Query: 249 ATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTT 308
+TL+V P ++ QW++E+ ++ L +Y GA L + + D+V+TT
Sbjct: 290 STLVVAPLSLIKQWESEVQTKSK---LTAIVYHGASRYKL-------LKVIHEYDVVITT 339
Query: 309 YDVL-KEDLSHDSDRHEGDR--RFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAA 365
Y +L E +SH++ +G ++K+ P L +WWRI LDEA +++ ++
Sbjct: 340 YQILVSEWVSHNTTGTDGKSPTEAKSYEKKKPS----LFAFYWWRIILDEAHTIKNKSSK 395
Query: 366 ATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRWWIEVIRDPYENGDVG 425
+ L +RWC+TGTP+Q +D+LY L++FL +PF+ W + I P G+
Sbjct: 396 SALACCALQGINRWCLTGTPLQNNVDELYSLVKFLHINPFNDQSVWKDQISLPLCQGEEN 455
Query: 426 -AMEFTHKFFKEIMCRSSKV---------HVSDELQLPPQEECVSWLTFSPIEEHFYQSQ 475
+ IM R +K L+L + F E FY +
Sbjct: 456 LVFKRLRMLLSVIMLRRTKTLLEANAGKDGTGGALKLSKRLVYKVICKFEESERDFYSN- 514
Query: 476 HETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHP 535
AR ++R N + G ++ +L LL+LRQAC HP
Sbjct: 515 ------LARN-MERTMSNFVNSGKLGKNYTN--------------ILCLLLRLRQACNHP 553
Query: 536 Q 536
Q
Sbjct: 554 Q 554
Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 24/32 (75%)
Query: 108 GGILADEMGLGKTVELLACIFAHRKPASDDSI 139
GGILAD+MGLGKT++++A I +H P SI
Sbjct: 257 GGILADDMGLGKTIQMIALILSHPLPKKKHSI 288
>sp|Q4WVM1|RAD5_ASPFU DNA repair protein rad5 OS=Neosartorya fumigata (strain ATCC
MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=rad5 PE=3
SV=2
Length = 1245
Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 78/306 (25%), Positives = 131/306 (42%), Gaps = 63/306 (20%)
Query: 246 ATGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGA--- 302
A TL+V P +L+QW++E + + G++K +Y G S+ ++ EL A
Sbjct: 610 APNTTLVVAPTSLLSQWESEAMKASEQGTMKVLMYYGVDKST-------NLQELCSAGNP 662
Query: 303 ---DIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMV 359
+I++T+Y V+ + R+ F L + ++R+ LDEA ++
Sbjct: 663 AAPNIIITSYGVVLSE----------SRQLAMFNSN---TQGGLFSVDFFRVILDEAHVI 709
Query: 360 ESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRWWIEVIRDPY 419
++ + L A HRW +TGTPI +L+DL+ L+RFL+ P++ +W I P+
Sbjct: 710 KNRRSKTARACYELRATHRWVLTGTPIVNRLEDLFSLVRFLQVEPWNNFSFWKTFITVPF 769
Query: 420 ENGD-VGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWL--TFSPIEEHFYQSQH 476
E+ D V A+ + ++ R +K ++ P E V T +E + +
Sbjct: 770 ESKDYVRALNVVQTVLEPLVLRRTKT-----MKTPEGEPLVPLPRRTIDIVEVELSEQER 824
Query: 477 ETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNS-------LLKLR 529
E + DNI EA LL S +L+LR
Sbjct: 825 EIYDYIFTRAKRTFNDNI----------------------EAGTLLKSFSTIFAQILRLR 862
Query: 530 QACCHP 535
Q CCHP
Sbjct: 863 QTCCHP 868
Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 56/107 (52%), Gaps = 9/107 (8%)
Query: 33 PDLLPLLRPYQRRAAYWMVQREKGDSASSSERERSQFFSPLCMPMDFLD--------TYS 84
P + LR YQR+A +WM+ +EK D S E + P +D +
Sbjct: 477 PSFVLNLRKYQRQALHWMLAKEK-DKKSGRELSMHPLWEEYTWPTKDVDDKDLPAVEGQA 535
Query: 85 TLFYNPFSGSLSLSPDYTSSYVFGGILADEMGLGKTVELLACIFAHR 131
+ NP+SG LSL + GGILADEMGLGKT+E+L+ I +HR
Sbjct: 536 HFYVNPYSGELSLDFPAQEQHCLGGILADEMGLGKTIEMLSLIHSHR 582
>sp|Q08562|ULS1_YEAST ATP-dependent helicase ULS1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=ULS1 PE=1 SV=1
Length = 1619
Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 94/393 (23%), Positives = 165/393 (41%), Gaps = 78/393 (19%)
Query: 249 ATLIVCPAPILAQWDAEI-TRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLT 307
LIV P +L W E+ T+ + T I+ G+ N + +L D VL
Sbjct: 995 TNLIVAPVSVLRVWKGELETKVKKRAKFTTFIFGGSGNGK-----VKHWRDLARYDAVLV 1049
Query: 308 TYDVLKEDLS-HDSDRHEGDRRFMRFQKRYPVIPTL--LTRI---------------FWW 349
+Y L + H + +G+ Q + P +P + L R+ ++
Sbjct: 1050 SYQTLANEFKKHWPKKLDGE------QNQLPAVPHIQALNRLKTSNEYYSPFFCNDSTFY 1103
Query: 350 RICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPF---- 405
RI LDE Q +++ A++ + +RW ++GTPIQ +D+LY L+RFL+ P+
Sbjct: 1104 RILLDEGQNIKNKNTRASKACCTINGMYRWVLSGTPIQNSMDELYSLIRFLRIPPYHKEQ 1163
Query: 406 ----SISRWWIEVIRDPYENGD-VGAMEFTHKFFKEIMCRSSKVHVSDE---LQLPPQEE 457
I R++ + Y+N D A+ IM R SK D L+LPP+
Sbjct: 1164 RFKLDIGRFFQRNKQYQYDNEDRKNALRKVRVLLNAIMLRRSKADKIDGKPLLELPPKIV 1223
Query: 458 CVSWLTFSPIEEHFYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAE 517
V E FY + A++++ + S+ Y+ ++T
Sbjct: 1224 EVDESRLKGEELKFYTALESKNQALAKKLL--------------NNSTRGSYSSVLTL-- 1267
Query: 518 AAKLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSM-----DEILMVLIGKTKIEGEEALR 572
LL+LRQACCH ++ G + + + ++ D+ L + T + G EA
Sbjct: 1268 -------LLRLRQACCHSELVVMGEKKAEGTKVANGKSFEDDWLRLYYKITHMSG-EAQA 1319
Query: 573 KLVMALNGLAGIALIEKNLSQAVSLYKEAMAVV 605
+++ ++N + +E+ L EAM+V+
Sbjct: 1320 QVITSMNSMTCFWCMEQ-------LEPEAMSVL 1345
Score = 38.9 bits (89), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 22/28 (78%)
Query: 108 GGILADEMGLGKTVELLACIFAHRKPAS 135
GG+LAD+MGLGKT++ +A + A+R S
Sbjct: 964 GGLLADDMGLGKTIQAIALMLANRSEES 991
>sp|Q5ACX1|RAD5_CANAL DNA repair protein RAD5 OS=Candida albicans (strain SC5314 / ATCC
MYA-2876) GN=RAD5 PE=3 SV=1
Length = 1084
Score = 91.7 bits (226), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 72/299 (24%), Positives = 125/299 (41%), Gaps = 37/299 (12%)
Query: 241 TDSPVATGATLIVCPAPILAQWDAEITRHTRPGSLKTC-IYEGARNSSLSDTSIMDISEL 299
+D P A+ TLIV P +L QW +E + S C ++ G + S+ +
Sbjct: 490 SDRPYASQTTLIVVPMSLLFQWKSEFEKCNN-NSRHVCRLHYGEDQETNLAWSLCNPDNS 548
Query: 300 VGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMV 359
+++TTY + + + S R + L + ++RI LDE +
Sbjct: 549 KIPIVMITTYGTVLNEFTRLSKRRNSKGELPKVG---------LYSVKFFRIILDEGHNI 599
Query: 360 ESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRWWIEVIRDPY 419
+ + L + +W +TGTPI +LDDLY L +FL+ P++ +W + P+
Sbjct: 600 RNRNTKTAKSVYELQSSRKWILTGTPIVNRLDDLYSLTKFLELDPWNNFSYWKTFVTLPF 659
Query: 420 ENGDVG-AMEFTHKFFKEIMCRSSKVHVSDE---LQLPPQEECVSWLTFSPIEEHFYQSQ 475
E + ++ + I R +K + ++LP +E + + F+ EE YQ
Sbjct: 660 EQKKISQTLDVVKSILEPIFLRRTKSQKKNGKPLVELPAKEVVIEQIKFNDDEEKLYQWF 719
Query: 476 HETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCH 534
+ E I+ +L+R Y I+TH +L+LRQ CCH
Sbjct: 720 KDRAYASFAEGIK--SGQLLRR-----------YTQILTH---------ILRLRQVCCH 756
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 50/116 (43%), Gaps = 29/116 (25%)
Query: 39 LRPYQRRAAYWMVQREKG-------------DSASSSERERSQFFSPLCMPMDFLDTYST 85
LR YQ+ WM+ REK S S E E +PL + Y+T
Sbjct: 364 LRSYQKHGLSWMLAREKELDVLEMLSNEDKLSSQSRKELENLGTMNPLWRKYKW--PYAT 421
Query: 86 -------------LFY-NPFSGSLSLSPDYTSSYVFGGILADEMGLGKTVELLACI 127
FY N ++G LSL S + GGILADEMGLGKT+ LA +
Sbjct: 422 EATQDPTQNQTEKYFYANMYNGELSLEKPVIKSSLRGGILADEMGLGKTIATLALV 477
>sp|P41447|GTA_NPVAC Probable global transactivator OS=Autographa californica nuclear
polyhedrosis virus GN=GTA PE=3 SV=1
Length = 506
Score = 90.9 bits (224), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 77/300 (25%), Positives = 126/300 (42%), Gaps = 54/300 (18%)
Query: 250 TLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTY 309
TLIVCP ++ W E +H ++ L +D + IV+TTY
Sbjct: 81 TLIVCPLSLINHWVTENKKHDLNFNI------------LKYYKSLDADTVEHYHIVVTTY 128
Query: 310 DVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEM 369
DVL L+H + ++ K+ + T W R+ LDEA ++++
Sbjct: 129 DVL---LAH--------FKLIKQNKQSSLFSTR-----WHRVVLDEAHIIKNCKTGVHNA 172
Query: 370 ALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRWWIEVIRDPYENGDVGAMEF 429
A L A +RWCITGTPI K D+Y ++ FL+ PF+ R W + ++ + ++
Sbjct: 173 ACALTATNRWCITGTPIHNKHWDMYSMINFLQCRPFNNPRVWKMLNKNNDSTNRIKSI-- 230
Query: 430 THKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQS-QHETCVGYAREVIQ 488
K+I+ + K +S +P + F+ E+ Y + E+ Y + V
Sbjct: 231 ----IKKIVLKRDKSEISS--NIPKHTVEYVHVNFNEEEKTLYDKLKCESEEAYVKAVAA 284
Query: 489 RLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQS 548
R +N L R + +L +LKLRQ CCHP + G L+ +
Sbjct: 285 RENENALSR-----------------LQQMQHVLWLILKLRQICCHPYLAMHGKNILETN 327
>sp|P79051|RHP16_SCHPO ATP-dependent helicase rhp16 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rhp16 PE=3 SV=2
Length = 861
Score = 87.8 bits (216), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 76/264 (28%), Positives = 116/264 (43%), Gaps = 57/264 (21%)
Query: 250 TLIVCPAPILAQWDAEITRHTRPGSLKTCIYEG-ARNSSLSDTSIMDIS--ELVGADIVL 306
TL+V P + QW EI HT +L T +Y G AR DIS EL D+VL
Sbjct: 304 TLVVAPVVAIMQWKEEIDTHTNK-ALSTYLYYGQAR----------DISGEELSSYDVVL 352
Query: 307 TTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAA 366
T+Y+V++ + +R R + +LL ++ ++RI LDEA ++S
Sbjct: 353 TSYNVIE-------SVYRKERSGFRRKNGVVKEKSLLHQMEFYRIILDEAHGIKSRTCNT 405
Query: 367 TEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSI---------SRWW------ 411
L + C++GTP+Q ++ +L+ LLRFL++ PF+ S W
Sbjct: 406 ARAVCGLRTTRKICLSGTPLQNRIGELFSLLRFLRADPFAYYYCLQCECKSLHWRFSDRS 465
Query: 412 -----------------IEVIRD----PYENGDVGAMEFTHKFFKEIMCRSSKVHVSDEL 450
E+++ YE A + H K IM R +K+ +D+L
Sbjct: 466 NCDECGHKPMSHTCYFNAEMLKPIQKFGYEGPGKLAFKKVHSLLKHIMLRRTKLERADDL 525
Query: 451 QLPPQEECVSWLTFSPIEEHFYQS 474
LPP+ V F+ EE YQS
Sbjct: 526 GLPPRVVEVRKDLFNEEEEDVYQS 549
Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Query: 108 GGILADEMGLGKTVELLACIFAHRKPASDDSIFIDTAVQV 147
GGILADEMG+GKT++ +A + + +P ++ + V +
Sbjct: 276 GGILADEMGMGKTIQTIALLLS--EPRGKPTLVVAPVVAI 313
>sp|Q06554|IRC20_YEAST Uncharacterized ATP-dependent helicase IRC20 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=IRC20 PE=1
SV=1
Length = 1556
Score = 87.8 bits (216), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 86/319 (26%), Positives = 150/319 (47%), Gaps = 55/319 (17%)
Query: 254 CPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMD--ISELVGADIVLTTYDV 311
CP IL QW EI H SLK Y G N + D +D + +L DI++T+Y++
Sbjct: 437 CPNAILKQWLEEIELHA--NSLKWYTYRGY-NEIMKDCKTVDEAVQQLCQYDIIVTSYNI 493
Query: 312 LKEDLSH-DSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMA 370
+ ++ H + +R RR + Y L+ ++RI LDE QM+ S++ + +
Sbjct: 494 IATEVHHAEFNRSIRSRRLKSPKYDYSSPLALMQ---FYRIILDEVQMLRSSSTYSAKCT 550
Query: 371 LRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRWWIEVIRDP---------YEN 421
L+ H W ++GTPIQ + + ++ +LK PF +I +++ Y +
Sbjct: 551 SLLHRIHTWGVSGTPIQ-NIYNFRMIMSYLKLHPFCDEVDFIRTLQEEIKLRNEAKDYTS 609
Query: 422 GD----VGAMEFTHK-----FFKEIMC-RSSKVHVSDELQLPPQEECVSWLTFSPIEEHF 471
D + + F+ K F++ +C R SK +V+ ++ +P Q + L F+PIE
Sbjct: 610 NDFVCQLKGVRFSIKDCMNIFYRYDLCIRHSKANVASQIHIPRQHNFIIPLEFAPIEWDN 669
Query: 472 YQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLL-KLRQ 530
Y + L +N L+ + G+ +SD +P +++A LN L +LR
Sbjct: 670 YLN---------------LWNNFLE--LSGY-NSDGSGSPRVSNA----FLNEWLSRLRY 707
Query: 531 ACCH---PQVGSSGLRSLQ 546
CCH P++ S+ + L
Sbjct: 708 ICCHALFPEILSTRQKRLH 726
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 73/158 (46%), Gaps = 45/158 (28%)
Query: 21 LSDQKPMLEEDLPDLLPLLRPYQRRAAYWMVQRE-KGDSASSSERERSQFFSPLCMP--- 76
LS KP L + +PDL L P+QR + WM+ +E G+S S + P +
Sbjct: 273 LSKIKPFLPQSIPDLKVNLLPFQRESVEWMLIKEGHGNSLSDT---------PTVIDEVG 323
Query: 77 -MDFLDTY----------------STLFYNPFSGSLSLSPD-------YTSSYVFG---- 108
+DF++ Y +L +N +G + + D Y + G
Sbjct: 324 LIDFMNEYYAYGYELIARSPDEVGPSLLWNKLTGYILTTEDAAHLYNQYRKERLSGDYPV 383
Query: 109 ---GILADEMGLGKTVELLACIFAHRKPASD-DSIFID 142
G+LA+EMGLGKT+E+L+ I +R+ D ++ FID
Sbjct: 384 CAKGVLAEEMGLGKTIEILSLILLNRRKLKDSEATFID 421
>sp|O10302|GTA_NPVOP Probable global transactivator OS=Orgyia pseudotsugata multicapsid
polyhedrosis virus GN=GTA PE=3 SV=1
Length = 498
Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 76/288 (26%), Positives = 113/288 (39%), Gaps = 62/288 (21%)
Query: 250 TLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTY 309
TLIVCP +L W AE +H P +L+ + G + S D A V TY
Sbjct: 80 TLIVCPLSLLNHWTAEAKKHNLPLNLRQ-FHGGDLDESFDD-----------AKAVAITY 127
Query: 310 DVLKEDLSH--DSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAAT 367
D L+ H + R G LL R W R+ LDEA +++++
Sbjct: 128 DTLRAHHKHYKTAGRASG----------------LLAR-HWHRVVLDEAHVIKNHQTGVH 170
Query: 368 EMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRWWIEVIRDPYENGDVGAM 427
A L A +RWCITGTPI + D+Y ++ FL+ PF W + R N D +
Sbjct: 171 AAACALSADNRWCITGTPIHNRHWDMYAIIHFLRCRPFDNVGVWRMLNR----NNDTNRI 226
Query: 428 EFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREVI 487
+ +I+ + +K ++ L +P + + F E Y +
Sbjct: 227 K---SVVNKIVLKRNKAEIA--LDIPQHDVQDVHVRFDEAEARVYNE--------LKSAS 273
Query: 488 QRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHP 535
QR D+ + D L+ L +LRQ CCHP
Sbjct: 274 QRAYDDAVASADKAGGMQDVLW--------------LLCRLRQVCCHP 307
>sp|O60177|YG42_SCHPO Uncharacterized ATP-dependent helicase C23E6.02
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC23E6.02 PE=3 SV=1
Length = 1040
Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 83/301 (27%), Positives = 130/301 (43%), Gaps = 53/301 (17%)
Query: 249 ATLIVCPAPILAQWDAEITRHTRPGSLKTC-IYEGARNSSLSDTSIMDISE-LVGADIVL 306
TLI+ P +L QW EI P T I+ G+ I+E L+ DIVL
Sbjct: 442 TTLIITPVSLLQQWHNEILTKIAPSHRPTVYIHHGSSKKH-------KIAEQLMSYDIVL 494
Query: 307 TTYDVL----KEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESN 362
TTY+V+ K +++D + K++ +P W+R+ LDEAQ +++
Sbjct: 495 TTYNVIAYEFKNKMAYDKSIEDNAP-----IKKFEHLPFFEAE--WYRVILDEAQTIKNR 547
Query: 363 AAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRWWIEVIRD---PY 419
A L + +RWC++GTP+Q +++ Y L++FL+ P+S W +D P
Sbjct: 548 NTLAARGCCLLESTYRWCLSGTPMQNGVEEFYSLIKFLRIKPYSD---WSSFSKDFTIPL 604
Query: 420 -ENGDVGA-MEFTHKFFKEIMCR---SSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQS 474
N + A M+ K ++ R ++K+ L LPP+ S S E FY +
Sbjct: 605 SSNINTSAPMKRFRGLLKAVLLRRTKNTKIDGKPILTLPPKTAVKSETDLSSSEMEFYNT 664
Query: 475 QHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCH 534
R+ +Q I TH + + LL+LRQACCH
Sbjct: 665 LQSGAQIQMRKYLQE--------------------GTITTHYGSLLV--LLLRLRQACCH 702
Query: 535 P 535
P
Sbjct: 703 P 703
Score = 37.7 bits (86), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 21/28 (75%), Gaps = 1/28 (3%)
Query: 108 GGILADEMGLGKTVELLACIFAHRKPAS 135
GGILAD+MGLGKTV+ LA + R P S
Sbjct: 411 GGILADDMGLGKTVQALALLVT-RPPES 437
>sp|Q6C2R8|RAD5_YARLI DNA repair protein RAD5 OS=Yarrowia lipolytica (strain CLIB 122 / E
150) GN=RAD5 PE=3 SV=1
Length = 1025
Score = 82.8 bits (203), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 70/294 (23%), Positives = 127/294 (43%), Gaps = 36/294 (12%)
Query: 247 TGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVL 306
G TL+V P +L QW+ E R L T +Y + +D + ++ + +I++
Sbjct: 460 VGCTLVVAPMSLLWQWEQECER----VGLSTYVY----HEKGADIDLDELFKTYSPNILI 511
Query: 307 TTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAA 366
T+Y L G R + + P + T+ F RI LDEA ++++ +
Sbjct: 512 TSYHTLVSHYGQIKALGGGLDRNVISETSSHERPKIFTKHFH-RIVLDEAHVIKNRNTVS 570
Query: 367 TEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRWWIEVIRDPYENGD-VG 425
+ L A ++W +TGTPI +L+DL+ +L+FL ++P++ +W I P++ G V
Sbjct: 571 AKACCLLRATNKWALTGTPIHNRLEDLFSILKFLGAAPWNDFIYWRNFITLPFQEGKIVS 630
Query: 426 AMEFTHKFFKEIMCRSSK----VHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVG 481
A+ + I+ R +K S + LP + + + + E Y
Sbjct: 631 ALMTVQCILEPIVLRRTKNMKQADGSPLVVLPKKTINIEKVALTDQERVIYSY------- 683
Query: 482 YAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHP 535
V+ R + ++ K + L +L +L+LRQ+CC P
Sbjct: 684 ----VLARAQTSLQKSEASEAVGRNYL-----------NILTQILRLRQSCCDP 722
Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 52/97 (53%), Gaps = 2/97 (2%)
Query: 36 LPL-LRPYQRRAAYWMVQREKGDSASSSERERSQFFSPLCMPMDFLDTYSTLFYNPFSGS 94
PL LR YQ++ WM+ RE + + + + S +PL +DF + + N SG+
Sbjct: 363 FPLELRRYQKQGLTWMISRET-EVSEYFDNDDSGPINPLWTKVDFPGSDEKFYVNFSSGA 421
Query: 95 LSLSPDYTSSYVFGGILADEMGLGKTVELLACIFAHR 131
L+L GGILADEMGLGKT+ LA ++ R
Sbjct: 422 LTLKFPKQERSFSGGILADEMGLGKTISTLAMVYRDR 458
>sp|Q6CNY4|INO80_KLULA Putative DNA helicase INO80 OS=Kluyveromyces lactis (strain ATCC 8585
/ CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)
GN=INO80 PE=3 SV=1
Length = 1489
Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 76/304 (25%), Positives = 124/304 (40%), Gaps = 64/304 (21%)
Query: 248 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISEL-VGAD--- 303
G ++V PA L W EI+R K Y G N + D L G D
Sbjct: 796 GPFIVVTPASTLHNWVNEISRFV--PQFKILPYWGNANDRKTLRKFWDRKHLRYGRDAPF 853
Query: 304 -IVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESN 362
+++T+Y ++ D S+ L ++ W + LDEAQ ++S+
Sbjct: 854 HVMVTSYQMVVSDASY------------------------LQKMKWQYMILDEAQAIKSS 889
Query: 363 AAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFS----ISRWWIEVIRDP 418
++ + L + ++R +TGTPIQ + +L+ LL F+ S F S W+ + I
Sbjct: 890 QSSRWKTLLSFHCRNRLLLTGTPIQNNMQELWALLHFIMPSLFDSHDEFSDWFSKDIESH 949
Query: 419 YE-NGDVGAMEF--THKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQ 475
E N ++ + H K M R K +V EL + + + LTF + YQ
Sbjct: 950 AESNTELNQEQLRRLHMVLKPFMLRRIKKNVQSELGDKIEIDVLCDLTFR--QAKLYQ-- 1005
Query: 476 HETCVGYAREVIQRLKDNILKRNVPG--HASSDALYNPIITHAEAAKLLNSLLKLRQACC 533
+LK V G A +A N +T + KL+N +++ R+ C
Sbjct: 1006 ------------------VLKSQVSGGYDAIENAAGNDDVTSDQ--KLVNLVMEFRKVCN 1045
Query: 534 HPQV 537
HP +
Sbjct: 1046 HPDL 1049
>sp|Q8RXS6|INO80_ARATH DNA helicase INO80 OS=Arabidopsis thaliana GN=INO80 PE=2 SV=2
Length = 1507
Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 75/308 (24%), Positives = 126/308 (40%), Gaps = 74/308 (24%)
Query: 248 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIM--DISEL------ 299
G L+V PA +L W EI+R LKT Y G L + +I+ +I+
Sbjct: 636 GPFLVVAPASVLNNWADEISRFC--PDLKTLPYWGG----LQERTILRKNINPKRMYRRD 689
Query: 300 VGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMV 359
G I++T+Y +L D ++ R R+ W + LDEAQ +
Sbjct: 690 AGFHILITSYQLLVTD-----------EKYFR-------------RVKWQYMVLDEAQAI 725
Query: 360 ESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPF----SISRWWIEVI 415
+S+++ + L ++R +TGTPIQ + +L+ LL F+ F + W+ + I
Sbjct: 726 KSSSSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPMLFDNHDQFNEWFSKGI 785
Query: 416 RDPYENGDV---GAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFY 472
+ E+G + H K M R K V EL + E S ++ FY
Sbjct: 786 ENHAEHGGTLNEHQLNRLHAILKPFMLRRVKKDVVSELTT--KTEVTVHCKLSSRQQAFY 843
Query: 473 QSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNP---IITHAEAAKLLNSLLKLR 529
Q+ +K+ I S L++ T + L+N +++LR
Sbjct: 844 QA---------------IKNKI---------SLAELFDSNRGQFTDKKVLNLMNIVIQLR 879
Query: 530 QACCHPQV 537
+ C HP++
Sbjct: 880 KVCNHPEL 887
>sp|Q08773|ISW2_YEAST ISWI chromatin-remodeling complex ATPase ISW2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=ISW2 PE=1
SV=1
Length = 1120
Score = 68.6 bits (166), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 78/354 (22%), Positives = 142/354 (40%), Gaps = 70/354 (19%)
Query: 248 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLT 307
G LI+ P L W E + T ++ + G +++ + +I D+++T
Sbjct: 234 GPFLIIVPKSTLDNWRREFLKWT--PNVNVLVLHGDKDTRAD--IVRNIILEARFDVLIT 289
Query: 308 TYD-VLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAA 366
+Y+ V++E L R+ W I +DEA +++ +A
Sbjct: 290 SYEMVIRE-------------------------KNALKRLAWQYIVIDEAHRIKNEQSAL 324
Query: 367 TEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRW---WIEVIRDPYENGD 423
+++ Y+K+R ITGTP+Q L +L+ LL FL F S W E ++ E
Sbjct: 325 SQIIRLFYSKNRLLITGTPLQNNLHELWALLNFLLPDIFGDSELFDEWFE--QNNSEQDQ 382
Query: 424 VGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYA 483
++ H + R K V E L P+ E ++ + ++ +Y+S
Sbjct: 383 EIVIQQLHSVLNPFLLRRVKADV--EKSLLPKIETNVYVGMTDMQIQWYKS--------- 431
Query: 484 REVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLR 543
+L++++ DA+ + +LLN +++LR+ C HP +
Sbjct: 432 ----------LLEKDI------DAVNGAVGKREGKTRLLNIVMQLRKCCNHPYLFEGAEP 475
Query: 544 SLQQSPLSMDEILMVLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQAVSL 597
P + DE L+ GK I L KL+ L LI +S+ + +
Sbjct: 476 G---PPYTTDEHLIFNSGKMII-----LDKLLKRLKEKGSRVLIFSQMSRLLDI 521
>sp|Q8RWY3|ISW2_ARATH Putative chromatin-remodeling complex ATPase chain OS=Arabidopsis
thaliana GN=At3g06400 PE=2 SV=3
Length = 1055
Score = 67.8 bits (164), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 89/196 (45%), Gaps = 33/196 (16%)
Query: 341 TLLTRIFWWRICLDEAQMVESNAAAATEMALRLYA-KHRWCITGTPIQRKLDDLYGLLRF 399
T L R W I +DEA ++ N + +RL++ +R ITGTP+Q L +L+ LL F
Sbjct: 304 TALRRFSWRYIIIDEAHRIK-NENSLLSKTMRLFSTNYRLLITGTPLQNNLHELWALLNF 362
Query: 400 LKSSPFSISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECV 459
L FS + + E + EN ++ HK + + R K V E LPP++E +
Sbjct: 363 LLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDV--EKGLPPKKETI 420
Query: 460 SWLTFSPIEEHFYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAA 519
+ S +++ +Y++ +L++++ + E
Sbjct: 421 LKVGMSQMQKQYYKA-------------------LLQKDLEA----------VNAGGERK 451
Query: 520 KLLNSLLKLRQACCHP 535
+LLN ++LR+ C HP
Sbjct: 452 RLLNIAMQLRKCCNHP 467
>sp|Q7G8Y3|ISW2_ORYSJ Probable chromatin-remodeling complex ATPase chain OS=Oryza sativa
subsp. japonica GN=Os01g0367900 PE=2 SV=2
Length = 1107
Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 88/196 (44%), Gaps = 33/196 (16%)
Query: 341 TLLTRIFWWRICLDEAQMVESNAAAATEMALRLY-AKHRWCITGTPIQRKLDDLYGLLRF 399
T L R W I +DEA ++ N + +R+Y +R ITGTP+Q L +L+ LL F
Sbjct: 346 TTLKRFSWRYIIIDEAHRIK-NENSLLSKTMRIYNTNYRLLITGTPLQNNLHELWSLLNF 404
Query: 400 LKSSPFSISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECV 459
L FS + + E + EN ++ HK + + R K V E LPP++E +
Sbjct: 405 LLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDV--EKGLPPKKETI 462
Query: 460 SWLTFSPIEEHFYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAA 519
+ S +++ +Y++ +L++++ I E
Sbjct: 463 LKVGMSQMQKQYYRA-------------------LLQKDL----------EVINAGGERK 493
Query: 520 KLLNSLLKLRQACCHP 535
+LLN ++LR+ C HP
Sbjct: 494 RLLNIAMQLRKCCNHP 509
>sp|Q6ZPV2|INO80_MOUSE DNA helicase INO80 OS=Mus musculus GN=Ino80 PE=2 SV=2
Length = 1559
Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 70/305 (22%), Positives = 125/305 (40%), Gaps = 66/305 (21%)
Query: 248 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGAD---- 303
G LI+ PA L W E TR K Y G + L D
Sbjct: 570 GPFLIISPASTLNNWHQEFTRFV--PKFKVLPYWGNPHDRKVIRRFWSQKTLYTQDAPFH 627
Query: 304 IVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA 363
+V+T+Y ++ +D+ + FQ R+ W + LDEAQ ++S++
Sbjct: 628 VVITSYQLVVQDVKY-------------FQ-----------RVKWQYMVLDEAQALKSSS 663
Query: 364 AAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPF----SISRWWIEVIRDPY 419
+ ++ L+ ++R +TGTPIQ + +L+ LL F+ + F + W+ + I
Sbjct: 664 SVRWKILLQFQCRNRLLLTGTPIQNTMAELWALLHFIMPTLFDSHEEFNEWFSKDIESHA 723
Query: 420 ENG---DVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQH 476
EN D + H K M R K V +EL + E +++ + ++ YQ+
Sbjct: 724 ENKSAIDENQLSRLHMILKPFMLRRIKKDVENELS--DKIEILTYCQLTSRQKLLYQA-- 779
Query: 477 ETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEA----AKLLNSLLKLRQAC 532
LK+ I + D L + + + +A + L+N +++ R+ C
Sbjct: 780 -------------LKNKI--------SIEDLLQSSMGSTQQAQNTTSSLMNLVMQFRKVC 818
Query: 533 CHPQV 537
HP++
Sbjct: 819 NHPEL 823
>sp|Q9ULG1|INO80_HUMAN DNA helicase INO80 OS=Homo sapiens GN=INO80 PE=1 SV=2
Length = 1556
Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 70/305 (22%), Positives = 124/305 (40%), Gaps = 66/305 (21%)
Query: 248 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGAD---- 303
G LI+ PA L W E TR K Y G + L D
Sbjct: 568 GPFLIISPASTLNNWHQEFTRFV--PKFKVLPYWGNPHDRKVIRRFWSQKTLYTQDAPFH 625
Query: 304 IVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA 363
+V+T+Y ++ +D+ + FQ R+ W + LDEAQ ++S++
Sbjct: 626 VVITSYQLVVQDVKY-------------FQ-----------RVKWQYMVLDEAQALKSSS 661
Query: 364 AAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPF----SISRWWIEVIRDPY 419
+ ++ L+ ++R +TGTPIQ + +L+ LL F+ + F + W+ + I
Sbjct: 662 SVRWKILLQFQCRNRLLLTGTPIQNTMAELWALLHFIMPTLFDSHEEFNEWFSKDIESHA 721
Query: 420 ENG---DVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQH 476
EN D + H K M R K V +EL + E + + + ++ YQ+
Sbjct: 722 ENKSAIDENQLSRLHMILKPFMLRRIKKDVENELS--DKIEILMYCQLTSRQKLLYQA-- 777
Query: 477 ETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEA----AKLLNSLLKLRQAC 532
LK+ I + D L + + + +A + L+N +++ R+ C
Sbjct: 778 -------------LKNKI--------SIEDLLQSSMGSTQQAQNTTSSLMNLVMQFRKVC 816
Query: 533 CHPQV 537
HP++
Sbjct: 817 NHPEL 821
>sp|A7EQA8|INO80_SCLS1 Putative DNA helicase INO80 OS=Sclerotinia sclerotiorum (strain ATCC
18683 / 1980 / Ss-1) GN=INO80 PE=3 SV=1
Length = 1707
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 74/317 (23%), Positives = 126/317 (39%), Gaps = 65/317 (20%)
Query: 248 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNS-----SLSDTSIMDISELVGA 302
G L+V PA L W EIT+ LK Y G D + +E
Sbjct: 891 GPFLVVAPASTLHNWQQEITKFV--PRLKVLPYWGTAADRKVLRKFWDRKHITYTEDAPF 948
Query: 303 DIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESN 362
+++T+Y ++ D+++ FQK + W + LDEAQ ++S+
Sbjct: 949 HVLVTSYQLVVSDVAY-------------FQK-----------MKWQYMILDEAQAIKSS 984
Query: 363 AAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPF----SISRWWIEVIRDP 418
++ + L + ++R +TGTPIQ + +L+ LL F+ S F S W+ + I
Sbjct: 985 QSSRWKSLLGFHCRNRLLLTGTPIQNNMQELWALLHFIMPSLFDSHDEFSEWFSKDIESH 1044
Query: 419 YENG---DVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQ 475
++ + ++ H K M R K HV EL +E+ LT+
Sbjct: 1045 AQSNTKLNEDQLKRLHMILKPFMLRRVKKHVQKELGDKIEEDIFCDLTYR---------- 1094
Query: 476 HETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHP 535
R L++ I ++ A+ I + L+N +++ R+ C HP
Sbjct: 1095 -------QRAYYSNLRNQISIMDLIEKAT-------IGDDNDTGTLMNLVMQFRKVCNHP 1140
Query: 536 QVGSSGLRSLQQSPLSM 552
+ R+ SPLS
Sbjct: 1141 DLFE---RAETTSPLSF 1154
>sp|P41877|ISW1_CAEEL Chromatin-remodeling complex ATPase chain isw-1 OS=Caenorhabditis
elegans GN=isw-1 PE=1 SV=2
Length = 1009
Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 79/350 (22%), Positives = 136/350 (38%), Gaps = 71/350 (20%)
Query: 251 LIVCPAPILAQWDAEITRHTRPGSLKTCIY---EGARNSSLSDTSIMDISELVGADIVLT 307
L++ P L W E + S+ + E ARN L D + D+ T
Sbjct: 185 LVIVPKSTLQNWANEFKKWC--PSINAVVLIGDEAARNQVLRDVILPQ-----KFDVCCT 237
Query: 308 TYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAAT 367
TY+++ + + T L ++ W I +DEA +++ + +
Sbjct: 238 TYEMMLK------------------------VKTQLKKLNWRYIIIDEAHRIKNEKSKLS 273
Query: 368 EMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRWWIEVIRDPYENGDVGAM 427
E L +++R ITGTP+Q L +L+ LL FL F+ S + + +G+ +
Sbjct: 274 ETVRELNSENRLLITGTPLQNNLHELWALLNFLLPDIFTSSDDFDSWFSNDAMSGNTDLV 333
Query: 428 EFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREVI 487
+ HK + + R K V E L P++E ++ S ++ +Y +V+
Sbjct: 334 QRLHKVLQPFLLRRIKSDV--EKSLLPKKEVKVYVGLSKMQREWYT-----------KVL 380
Query: 488 QRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQ 547
+ D I N G E A+L+N L+ LR+ HP +
Sbjct: 381 MKDIDII---NGAG-------------KVEKARLMNILMHLRKCVNHPYLFDGAEPG--- 421
Query: 548 SPLSMDEILMVLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQAVSL 597
P + D+ L+ GK + L KL+M LI S+ + L
Sbjct: 422 PPFTTDQHLVDNSGKMVV-----LDKLLMKFKEQGSRVLIFSQFSRMLDL 466
>sp|Q86WJ1|CHD1L_HUMAN Chromodomain-helicase-DNA-binding protein 1-like OS=Homo sapiens
GN=CHD1L PE=1 SV=2
Length = 897
Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 84/357 (23%), Positives = 143/357 (40%), Gaps = 71/357 (19%)
Query: 248 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLT 307
G LI+CP +L+ W E+ R PG L Y G + D+ + ++LT
Sbjct: 96 GPFLILCPLSVLSNWKEEMQRFA-PG-LSCVTYAGDKEERACLQQ--DLKQESRFHVLLT 151
Query: 308 TYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAAT 367
TY++ +D S F K +P W + +DEA +++ ++
Sbjct: 152 TYEICLKDAS--------------FLKSFP----------WSVLVVDEAHRLKNQSSLLH 187
Query: 368 EMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRW--WIEVIRDPYENGDVG 425
+ +TGTPIQ L +LY LL F++ FS +I+ +D E
Sbjct: 188 KTLSEFSVVFSLLLTGTPIQNSLQELYSLLSFVEPDLFSKEEVGDFIQRYQD-IEKESES 246
Query: 426 AMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYARE 485
A E HK + + R K V+ E LP + E V + S +++ +Y++
Sbjct: 247 ASEL-HKLLQPFLLRRVKAEVATE--LPKKTEVVIYHGMSALQKKYYKA----------- 292
Query: 486 VIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSL 545
IL +++ DA N A+ KL N L +LR+ HP + +
Sbjct: 293 --------ILMKDL------DAFENET---AKKVKLQNILSQLRKCVDHPYL----FDGV 331
Query: 546 QQSPLSMDEILMVLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQAVSLYKEAM 602
+ P + + L GK + L KL+ L L+ ++Q + + ++ M
Sbjct: 332 EPEPFEVGDHLTEASGKLHL-----LDKLLAFLYSGGHRVLLFSQMTQMLDILQDYM 383
>sp|P22082|SNF2_YEAST Transcription regulatory protein SNF2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SNF2 PE=1 SV=1
Length = 1703
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/241 (23%), Positives = 104/241 (43%), Gaps = 48/241 (19%)
Query: 248 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLT 307
G L++ P L+ W +E + +L+T ++G+ N + + + E D+VLT
Sbjct: 817 GPYLVIVPLSTLSNWSSEFAKWA--PTLRTISFKGSPNERKAKQAKIRAGEF---DVVLT 871
Query: 308 TYD-VLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAA 366
T++ ++KE LL+++ W + +DE ++ NA +
Sbjct: 872 TFEYIIKER-------------------------ALLSKVKWVHMIIDEGHRMK-NAQSK 905
Query: 367 TEMALR--LYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRWWIEVIRDPYEN-GD 423
+ L +A +R +TGTP+Q L +L+ LL F+ F+ + + E P+ N G
Sbjct: 906 LSLTLNTHYHADYRLILTGTPLQNNLPELWALLNFVLPKIFNSVKSFDEWFNTPFANTGG 965
Query: 424 VGAMEFT-----------HKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFY 472
+E + HK + + R K V E +LP + E V S +++ Y
Sbjct: 966 QDKIELSEEETLLVIRRLHKVLRPFLLRRLKKDV--EKELPDKVEKVVKCKMSALQQIMY 1023
Query: 473 Q 473
Q
Sbjct: 1024 Q 1024
>sp|Q9UTN6|SNF21_SCHPO Chromatin structure-remodeling complex subunit snf21
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=snf21 PE=1 SV=1
Length = 1199
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 69/329 (20%), Positives = 121/329 (36%), Gaps = 87/329 (26%)
Query: 247 TGATLIVCPAPILAQWDAEITR---------HTRPGSLKTCIYEGARNSSLSDTSIMDIS 297
G L++ P L W E R + P ++ ++ R+S+
Sbjct: 466 NGPFLVIVPLSTLTNWTMEFERWAPSIVKIVYKGPPQVRKALHPQVRHSNFQ-------- 517
Query: 298 ELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQ 357
++LTTY+ + +D LL+RI W + +DE
Sbjct: 518 ------VLLTTYEYIIKDRP------------------------LLSRIKWIYMIIDEGH 547
Query: 358 MVESNAAAATEMALRLYA-KHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRWWIEVIR 416
+++ + T Y+ ++R +TGTP+Q L +L+ LL F+ F+ + + E
Sbjct: 548 RMKNTQSKLTNTLTTYYSSRYRLILTGTPLQNNLPELWALLNFVLPRIFNSIKSFDEWFN 607
Query: 417 DPYEN-GDVGAMEFT-----------HKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTF 464
P+ N G ME T HK + + R K V E +LP + E V
Sbjct: 608 TPFANTGGQDKMELTEEESLLVIRRLHKVLRPFLLRRLKKDV--EAELPDKVEKVIRCQM 665
Query: 465 SPIEEHFYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNS 524
S +++ Y + + Y + KR G L N+
Sbjct: 666 SGLQQKLYYQMKKHGMLYVEDA---------KRGKTG----------------IKGLQNT 700
Query: 525 LLKLRQACCHPQVGSSGLRSLQQSPLSMD 553
+++L++ C HP V RS+ + + D
Sbjct: 701 VMQLKKICNHPFVFEDVERSIDPTGFNYD 729
>sp|Q9CXF7|CHD1L_MOUSE Chromodomain-helicase-DNA-binding protein 1-like OS=Mus musculus
GN=Chd1l PE=2 SV=1
Length = 900
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 77/334 (23%), Positives = 129/334 (38%), Gaps = 66/334 (19%)
Query: 231 CQWCDELIEATDSPVATGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSD 290
CQ LI G L++CP +L+ W E+ R PG L Y G +
Sbjct: 73 CQTIALLIYLVGRLNDEGPFLVLCPLSVLSNWKEEMERFA-PG-LSCVTYTGDKEERARL 130
Query: 291 TSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWR 350
D+ + G ++LTTY++ +D S L W
Sbjct: 131 QQ--DLRQESGFHVLLTTYEICLKDAS------------------------FLKSFSWSV 164
Query: 351 ICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRW 410
+ +DEA +++ ++ A R +TGTPIQ L +LY LL ++ F R
Sbjct: 165 LAVDEAHRLKNQSSLLHRTLSEFSAVFRLLLTGTPIQNSLRELYSLLCVVEPDLF--CRE 222
Query: 411 WIEVIRDPYEN--GDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIE 468
+E Y++ + + H+ + + R K V+ E LP + E V + S ++
Sbjct: 223 QVEDFVQRYQDIEKESKSASELHRLLQPFLLRRVKAQVATE--LPKKTEVVVYHGMSALQ 280
Query: 469 EHFYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKL 528
+ +Y++ IL +++ DA N A+ KL N L +L
Sbjct: 281 KKYYKA-------------------ILMKDL------DAFENET---AKKVKLQNILTQL 312
Query: 529 RQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGK 562
R+ HP + ++ P + E L+ GK
Sbjct: 313 RKCVDHPYL----FDGVEPEPFEVGEHLIEASGK 342
>sp|P32333|MOT1_YEAST TATA-binding protein-associated factor MOT1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=MOT1 PE=1 SV=1
Length = 1867
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 87/218 (39%), Gaps = 45/218 (20%)
Query: 250 TLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTY 309
+LI+CP + W+ E ++ LK +Y G L+ +L ADI++T+Y
Sbjct: 1335 SLIICPPSLTGHWENEFDQYA--PFLKVVVYAGGPTVRLTLRP-----QLSDADIIVTSY 1387
Query: 310 DVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEM 369
DV + DL+ +L + + LDE +++++ + +
Sbjct: 1388 DVARNDLA------------------------VLNKTEYNYCVLDEGHIIKNSQSKLAKA 1423
Query: 370 ALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRWWIEVIRDPY---------- 419
+ A HR +TGTPIQ + +L+ L FL + + E P
Sbjct: 1424 VKEITANHRLILTGTPIQNNVLELWSLFDFLMPGFLGTEKMFQERFAKPIAASRNSKTSS 1483
Query: 420 --ENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQ 455
+ V A+E HK M R K V + LPP+
Sbjct: 1484 KEQEAGVLALEALHKQVLPFMLRRLKEDVLSD--LPPK 1519
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.132 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 379,187,294
Number of Sequences: 539616
Number of extensions: 15657030
Number of successful extensions: 44671
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 221
Number of HSP's successfully gapped in prelim test: 105
Number of HSP's that attempted gapping in prelim test: 43797
Number of HSP's gapped (non-prelim): 787
length of query: 1071
length of database: 191,569,459
effective HSP length: 128
effective length of query: 943
effective length of database: 122,498,611
effective search space: 115516190173
effective search space used: 115516190173
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 67 (30.4 bits)