Query 001476
Match_columns 1071
No_of_seqs 751 out of 3789
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 01:47:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001476.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001476hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0783 Uncharacterized conser 100.0 2.6E-54 5.7E-59 498.7 30.0 389 56-460 44-453 (1267)
2 COG5184 ATS1 Alpha-tubulin sup 100.0 3.7E-39 8.1E-44 363.1 29.8 341 155-499 68-465 (476)
3 COG5184 ATS1 Alpha-tubulin sup 100.0 2.7E-36 5.8E-41 340.1 24.6 315 197-520 58-430 (476)
4 KOG1427 Uncharacterized conser 100.0 1.5E-36 3.2E-41 321.5 20.7 338 155-500 20-400 (443)
5 KOG1427 Uncharacterized conser 100.0 5.7E-35 1.2E-39 309.5 15.6 292 155-456 77-399 (443)
6 KOG0783 Uncharacterized conser 100.0 1.6E-32 3.4E-37 318.9 14.4 377 26-418 51-453 (1267)
7 KOG4412 26S proteasome regulat 99.8 5.5E-19 1.2E-23 177.4 6.6 125 1-137 53-178 (226)
8 KOG1428 Inhibitor of type V ad 99.7 1.1E-16 2.4E-21 192.2 16.6 188 154-349 587-871 (3738)
9 KOG1428 Inhibitor of type V ad 99.7 3.7E-16 8.1E-21 187.8 18.5 184 186-387 567-854 (3738)
10 KOG4412 26S proteasome regulat 99.7 2.4E-17 5.2E-22 165.7 5.9 127 1-140 87-213 (226)
11 KOG0509 Ankyrin repeat and DHH 99.6 1.8E-16 3.8E-21 185.3 7.8 125 1-137 93-218 (600)
12 PHA02859 ankyrin repeat protei 99.6 7.6E-16 1.6E-20 164.8 8.9 127 1-139 68-200 (209)
13 KOG0509 Ankyrin repeat and DHH 99.6 4.3E-16 9.3E-21 182.1 7.1 142 2-163 60-203 (600)
14 PHA02743 Viral ankyrin protein 99.6 3E-15 6.5E-20 154.5 8.7 104 26-131 56-161 (166)
15 PHA02791 ankyrin-like protein; 99.6 3.4E-15 7.3E-20 166.8 8.5 120 1-137 14-134 (284)
16 PHA02791 ankyrin-like protein; 99.6 4E-15 8.6E-20 166.2 8.7 105 2-121 46-151 (284)
17 PHA02878 ankyrin repeat protei 99.6 4.3E-15 9.4E-20 177.8 9.1 127 1-139 149-277 (477)
18 KOG0508 Ankyrin repeat protein 99.6 1.6E-15 3.6E-20 170.4 4.5 125 1-139 99-223 (615)
19 KOG0508 Ankyrin repeat protein 99.5 4.2E-15 9.1E-20 167.2 6.9 150 1-162 57-207 (615)
20 PHA02741 hypothetical protein; 99.5 7.3E-15 1.6E-19 151.9 6.9 116 24-139 18-140 (169)
21 PHA02878 ankyrin repeat protei 99.5 1.3E-14 2.7E-19 173.8 9.3 125 1-139 183-308 (477)
22 PHA02874 ankyrin repeat protei 99.5 1.6E-14 3.5E-19 170.9 9.1 111 24-139 121-231 (434)
23 PHA02875 ankyrin repeat protei 99.5 2.2E-14 4.8E-19 168.3 10.0 102 26-132 101-202 (413)
24 PHA03095 ankyrin-like protein; 99.5 1.9E-14 4.1E-19 171.4 8.9 124 1-137 29-158 (471)
25 PHA02946 ankyin-like protein; 99.5 2.6E-14 5.6E-19 169.7 9.3 123 1-137 54-179 (446)
26 PF12796 Ank_2: Ankyrin repeat 99.5 2.9E-14 6.4E-19 130.9 7.4 89 31-128 1-89 (89)
27 PHA02716 CPXV016; CPX019; EVM0 99.5 2.3E-14 5E-19 176.7 8.7 125 1-137 157-323 (764)
28 PHA02874 ankyrin repeat protei 99.5 3.6E-14 7.7E-19 167.9 9.8 129 1-138 50-197 (434)
29 PHA02875 ankyrin repeat protei 99.5 2.6E-14 5.7E-19 167.7 8.4 126 1-138 117-245 (413)
30 PHA02743 Viral ankyrin protein 99.5 2.5E-14 5.5E-19 147.6 7.0 115 25-139 18-136 (166)
31 PHA02859 ankyrin repeat protei 99.5 4.3E-14 9.3E-19 151.4 8.4 109 24-137 48-164 (209)
32 PHA03100 ankyrin repeat protei 99.5 4E-14 8.7E-19 169.1 8.2 107 26-137 175-289 (480)
33 KOG0514 Ankyrin repeat protein 99.5 7.9E-15 1.7E-19 160.8 1.0 131 19-161 260-430 (452)
34 PLN03192 Voltage-dependent pot 99.5 6.8E-14 1.5E-18 178.0 9.4 124 1-137 540-695 (823)
35 PHA02884 ankyrin repeat protei 99.5 6.2E-14 1.3E-18 157.1 7.9 109 27-139 33-145 (300)
36 PHA02795 ankyrin-like protein; 99.5 6.8E-14 1.5E-18 162.8 7.3 124 1-139 133-262 (437)
37 PHA02798 ankyrin-like protein; 99.5 8.6E-14 1.9E-18 167.3 8.3 80 2-93 92-177 (489)
38 PHA02798 ankyrin-like protein; 99.5 8.5E-14 1.8E-18 167.3 8.2 124 1-137 53-188 (489)
39 KOG0512 Fetal globin-inducing 99.5 8.1E-14 1.8E-18 139.5 6.6 105 31-140 67-172 (228)
40 KOG0512 Fetal globin-inducing 99.4 1.1E-13 2.5E-18 138.5 7.1 116 18-138 88-205 (228)
41 PHA02716 CPXV016; CPX019; EVM0 99.4 1.2E-13 2.6E-18 170.4 9.0 123 1-136 229-404 (764)
42 PHA02989 ankyrin repeat protei 99.4 1.1E-13 2.5E-18 166.4 8.1 108 26-137 144-295 (494)
43 PHA02795 ankyrin-like protein; 99.4 1.1E-13 2.4E-18 161.1 7.5 122 1-129 164-293 (437)
44 PHA03095 ankyrin-like protein; 99.4 1.4E-13 3.1E-18 163.9 8.6 109 25-138 185-297 (471)
45 PHA02736 Viral ankyrin protein 99.4 9.3E-14 2E-18 141.1 5.1 98 25-124 53-152 (154)
46 PHA03100 ankyrin repeat protei 99.4 2E-13 4.3E-18 163.1 7.8 124 1-137 50-182 (480)
47 KOG0195 Integrin-linked kinase 99.4 1.2E-13 2.6E-18 147.1 4.9 117 24-145 31-147 (448)
48 PHA02741 hypothetical protein; 99.4 4.6E-13 9.9E-18 138.5 8.8 101 24-125 57-159 (169)
49 KOG0502 Integral membrane anky 99.4 2E-13 4.4E-18 141.1 5.9 113 21-138 154-266 (296)
50 PHA02946 ankyin-like protein; 99.4 3E-13 6.4E-18 160.7 8.0 125 1-139 87-216 (446)
51 PHA02884 ankyrin repeat protei 99.4 6.3E-13 1.4E-17 149.1 10.0 110 1-119 48-158 (300)
52 PHA02876 ankyrin repeat protei 99.4 3.7E-13 8E-18 168.2 8.6 108 26-138 374-483 (682)
53 PHA02917 ankyrin-like protein; 99.4 6.4E-13 1.4E-17 164.3 8.6 131 1-139 50-237 (661)
54 PHA02730 ankyrin-like protein; 99.4 6.1E-13 1.3E-17 161.6 7.5 125 1-139 361-504 (672)
55 KOG4177 Ankyrin [Cell wall/mem 99.4 6.6E-13 1.4E-17 166.8 8.0 106 27-137 507-612 (1143)
56 PHA02989 ankyrin repeat protei 99.4 1.2E-12 2.7E-17 157.5 9.0 124 1-138 52-188 (494)
57 KOG0510 Ankyrin repeat protein 99.3 8.9E-13 1.9E-17 156.9 7.2 110 24-138 270-384 (929)
58 KOG0510 Ankyrin repeat protein 99.3 9.7E-13 2.1E-17 156.6 7.1 112 23-137 302-416 (929)
59 PHA02736 Viral ankyrin protein 99.3 3.7E-13 8.1E-18 136.7 3.0 116 24-139 14-134 (154)
60 KOG4177 Ankyrin [Cell wall/mem 99.3 1E-12 2.2E-17 165.1 6.9 125 2-139 523-652 (1143)
61 KOG0505 Myosin phosphatase, re 99.3 1.3E-12 2.7E-17 150.5 6.8 127 1-140 88-273 (527)
62 PHA02876 ankyrin repeat protei 99.3 2.5E-12 5.4E-17 160.8 8.8 124 2-138 256-382 (682)
63 KOG0502 Integral membrane anky 99.3 1.4E-12 3.1E-17 134.9 3.0 122 1-136 175-296 (296)
64 PLN03192 Voltage-dependent pot 99.3 5E-12 1.1E-16 161.0 7.7 109 26-139 524-663 (823)
65 PHA02917 ankyrin-like protein; 99.3 7.8E-12 1.7E-16 154.7 8.5 121 1-135 118-271 (661)
66 PF12796 Ank_2: Ankyrin repeat 99.2 2.3E-11 4.9E-16 111.7 8.4 78 1-94 12-89 (89)
67 KOG0514 Ankyrin repeat protein 99.2 9.4E-12 2E-16 137.0 6.7 91 25-120 338-429 (452)
68 PHA02792 ankyrin-like protein; 99.2 1E-11 2.3E-16 149.5 7.3 124 1-139 323-451 (631)
69 KOG4214 Myotrophin and similar 99.2 1.2E-11 2.6E-16 112.4 4.0 101 29-135 4-104 (117)
70 KOG0195 Integrin-linked kinase 99.2 1.7E-11 3.7E-16 131.0 5.9 112 1-125 49-160 (448)
71 PHA02792 ankyrin-like protein; 99.2 3.1E-11 6.8E-16 145.5 8.3 117 1-125 354-480 (631)
72 PTZ00322 6-phosphofructo-2-kin 99.2 4.1E-11 9E-16 148.9 8.8 106 29-139 84-196 (664)
73 PF13857 Ank_5: Ankyrin repeat 99.2 1.5E-11 3.2E-16 104.1 3.2 55 50-105 1-56 (56)
74 cd00204 ANK ankyrin repeats; 99.2 6.1E-11 1.3E-15 112.8 7.6 109 25-138 5-113 (126)
75 PHA02730 ankyrin-like protein; 99.1 7E-11 1.5E-15 143.9 8.0 119 1-126 397-526 (672)
76 KOG0507 CASK-interacting adapt 99.1 2E-11 4.3E-16 144.7 3.1 112 24-140 46-157 (854)
77 KOG0505 Myosin phosphatase, re 99.1 9.2E-11 2E-15 135.4 6.5 125 2-138 56-238 (527)
78 TIGR00870 trp transient-recept 99.1 1.1E-10 2.3E-15 147.5 6.8 110 25-139 126-265 (743)
79 TIGR00870 trp transient-recept 99.1 1.2E-10 2.5E-15 147.3 6.9 114 25-139 80-216 (743)
80 COG0666 Arp FOG: Ankyrin repea 99.1 3.4E-10 7.3E-15 118.6 8.9 113 25-142 71-191 (235)
81 KOG4214 Myotrophin and similar 99.1 2E-10 4.2E-15 104.7 5.6 75 26-105 33-107 (117)
82 PF13637 Ank_4: Ankyrin repeat 99.0 3E-10 6.6E-15 95.1 6.2 54 27-84 1-54 (54)
83 KOG0515 p53-interacting protei 99.0 2.6E-10 5.7E-15 130.0 6.2 103 29-136 552-655 (752)
84 COG0666 Arp FOG: Ankyrin repea 99.0 7.9E-10 1.7E-14 115.8 9.3 107 2-121 89-203 (235)
85 PF13637 Ank_4: Ankyrin repeat 99.0 2.7E-10 5.9E-15 95.4 2.8 54 64-118 1-54 (54)
86 KOG0515 p53-interacting protei 99.0 5.1E-10 1.1E-14 127.7 5.4 96 21-120 577-674 (752)
87 cd00204 ANK ankyrin repeats; 98.9 2.7E-09 5.8E-14 101.4 9.0 105 1-118 22-126 (126)
88 KOG1710 MYND Zn-finger and ank 98.9 1.1E-09 2.4E-14 117.5 6.1 91 25-120 43-134 (396)
89 KOG2315 Predicted translation 98.9 3E-09 6.5E-14 123.1 7.3 53 695-747 514-566 (566)
90 KOG3676 Ca2+-permeable cation 98.8 1.9E-09 4.1E-14 129.9 5.2 111 25-140 182-317 (782)
91 PF00415 RCC1: Regulator of ch 98.8 2.3E-09 5E-14 88.5 3.7 49 155-203 2-51 (51)
92 PF00415 RCC1: Regulator of ch 98.8 5.8E-09 1.3E-13 86.1 6.0 50 206-262 1-51 (51)
93 KOG0507 CASK-interacting adapt 98.8 2.4E-09 5.2E-14 127.5 4.0 109 1-122 64-172 (854)
94 KOG3676 Ca2+-permeable cation 98.8 6.8E-09 1.5E-13 125.3 6.9 116 1-121 199-331 (782)
95 KOG0941 E3 ubiquitin protein l 98.8 1.1E-10 2.5E-15 140.2 -8.4 182 177-372 3-198 (850)
96 KOG1710 MYND Zn-finger and ank 98.8 5.5E-09 1.2E-13 112.3 4.7 109 26-138 11-119 (396)
97 PF13857 Ank_5: Ankyrin repeat 98.8 8.7E-09 1.9E-13 87.2 4.8 56 5-71 1-56 (56)
98 PF13540 RCC1_2: Regulator of 98.7 1.4E-08 3E-13 75.0 4.7 30 249-278 1-30 (30)
99 PF13540 RCC1_2: Regulator of 98.7 1.5E-08 3.2E-13 74.8 4.3 30 300-329 1-30 (30)
100 PTZ00322 6-phosphofructo-2-kin 98.7 4.1E-08 8.9E-13 122.4 9.8 92 2-106 98-196 (664)
101 KOG0941 E3 ubiquitin protein l 98.6 7.7E-10 1.7E-14 133.2 -9.3 172 243-416 10-198 (850)
102 KOG0506 Glutaminase (contains 98.5 6.6E-08 1.4E-12 109.8 4.5 95 24-123 503-598 (622)
103 KOG4369 RTK signaling protein 98.5 9.5E-08 2.1E-12 116.4 5.6 127 1-139 839-968 (2131)
104 KOG4369 RTK signaling protein 98.4 7.6E-08 1.7E-12 117.3 2.9 128 26-164 756-883 (2131)
105 PHA03098 kelch-like protein; P 98.4 2.3E-07 4.9E-12 113.1 5.3 92 529-623 64-157 (534)
106 KOG0818 GTPase-activating prot 98.4 5E-07 1.1E-11 103.2 6.2 89 28-121 134-223 (669)
107 KOG0705 GTPase-activating prot 98.3 1.4E-06 3E-11 101.3 7.2 91 30-125 627-721 (749)
108 PF13606 Ank_3: Ankyrin repeat 98.2 1.2E-06 2.6E-11 64.7 3.9 30 63-92 1-30 (30)
109 PF00023 Ank: Ankyrin repeat H 98.2 1.5E-06 3.3E-11 65.3 4.2 32 63-94 1-32 (33)
110 KOG0522 Ankyrin repeat protein 98.1 1.5E-06 3.3E-11 100.9 4.4 89 29-120 22-110 (560)
111 KOG4325 Uncharacterized conser 98.1 7.5E-06 1.6E-10 81.2 6.8 58 688-745 151-210 (212)
112 KOG0818 GTPase-activating prot 97.9 5.4E-06 1.2E-10 95.0 2.7 91 57-154 120-216 (669)
113 KOG0782 Predicted diacylglycer 97.8 1.1E-05 2.5E-10 93.2 3.9 100 31-135 870-971 (1004)
114 KOG0782 Predicted diacylglycer 97.8 1.1E-05 2.4E-10 93.2 3.7 91 25-120 897-989 (1004)
115 PHA02790 Kelch-like protein; P 97.8 8.3E-06 1.8E-10 98.4 2.6 123 492-617 36-168 (480)
116 KOG0705 GTPase-activating prot 97.8 3.7E-05 8E-10 89.8 7.2 82 3-92 641-722 (749)
117 KOG2384 Major histocompatibili 97.8 1.5E-05 3.3E-10 82.0 3.7 67 54-121 2-69 (223)
118 PHA02713 hypothetical protein; 97.8 2E-05 4.2E-10 96.8 5.0 93 527-623 82-175 (557)
119 PF00023 Ank: Ankyrin repeat H 97.7 5.4E-05 1.2E-09 56.8 4.3 33 26-62 1-33 (33)
120 PF13606 Ank_3: Ankyrin repeat 97.7 5E-05 1.1E-09 56.1 3.7 30 26-59 1-30 (30)
121 KOG0521 Putative GTPase activa 97.6 3.9E-05 8.5E-10 96.2 4.3 90 25-119 654-743 (785)
122 COG5354 Uncharacterized protei 97.6 4.3E-05 9.4E-10 88.5 4.2 49 697-745 510-558 (561)
123 KOG0511 Ankyrin repeat protein 97.6 8.6E-05 1.9E-09 83.2 6.4 87 28-122 37-123 (516)
124 KOG4350 Uncharacterized conser 97.3 0.00015 3.2E-09 81.9 3.7 115 505-623 75-197 (620)
125 KOG0506 Glutaminase (contains 97.2 0.00024 5.2E-09 81.7 3.8 75 62-137 504-579 (622)
126 KOG4441 Proteins containing BT 97.1 0.00056 1.2E-08 84.2 5.9 120 501-623 63-186 (571)
127 KOG0521 Putative GTPase activa 97.0 0.00044 9.5E-09 87.1 3.9 88 52-140 642-731 (785)
128 KOG3609 Receptor-activated Ca2 97.0 0.00048 1E-08 84.7 4.0 116 24-139 22-172 (822)
129 KOG0522 Ankyrin repeat protein 97.0 0.0012 2.5E-08 77.6 6.5 58 25-86 53-110 (560)
130 KOG0511 Ankyrin repeat protein 97.0 0.00047 1E-08 77.4 3.1 68 66-134 38-105 (516)
131 KOG4591 Uncharacterized conser 96.6 0.0022 4.8E-08 66.6 4.8 90 529-622 123-216 (280)
132 KOG0520 Uncharacterized conser 96.4 0.0016 3.5E-08 81.8 2.5 96 25-125 572-668 (975)
133 KOG0520 Uncharacterized conser 96.1 0.0023 5E-08 80.4 1.6 91 26-120 607-702 (975)
134 KOG2505 Ankyrin repeat protein 96.1 0.0074 1.6E-07 70.4 5.3 69 46-118 406-480 (591)
135 KOG2384 Major histocompatibili 96.0 0.016 3.5E-07 60.4 6.7 66 25-94 10-76 (223)
136 PF07707 BACK: BTB And C-termi 96.0 0.013 2.9E-07 55.0 5.8 48 575-624 2-49 (103)
137 smart00248 ANK ankyrin repeats 95.7 0.017 3.7E-07 39.4 4.0 29 63-91 1-29 (30)
138 smart00875 BACK BTB And C-term 95.2 0.03 6.5E-07 52.0 5.0 47 575-623 2-48 (101)
139 PF11725 AvrE: Pathogenicity f 94.6 0.48 1E-05 63.0 15.0 294 188-512 422-780 (1774)
140 KOG3669 Uncharacterized conser 93.4 15 0.00033 44.6 22.8 108 195-322 190-299 (705)
141 PF11725 AvrE: Pathogenicity f 93.4 0.63 1.4E-05 62.0 12.7 280 189-501 490-816 (1774)
142 KOG2505 Ankyrin repeat protein 92.7 0.13 2.7E-06 60.6 4.7 65 2-72 407-471 (591)
143 smart00248 ANK ankyrin repeats 91.6 0.28 6.1E-06 33.1 3.8 28 27-58 2-29 (30)
144 TIGR02658 TTQ_MADH_Hv methylam 90.9 38 0.00083 39.7 26.0 291 186-495 36-348 (352)
145 KOG4682 Uncharacterized conser 90.7 0.18 4E-06 57.9 3.1 92 529-623 129-222 (488)
146 PLN02153 epithiospecifier prot 90.6 38 0.00081 39.1 23.5 20 449-468 307-326 (341)
147 KOG3609 Receptor-activated Ca2 90.5 0.51 1.1E-05 59.1 6.9 61 30-94 91-161 (822)
148 cd00200 WD40 WD40 domain, foun 90.3 26 0.00056 36.7 30.7 212 258-504 65-286 (289)
149 KOG2075 Topoisomerase TOP1-int 90.1 0.49 1.1E-05 55.8 6.0 92 529-623 176-272 (521)
150 KOG0315 G-protein beta subunit 90.1 9.3 0.0002 42.1 15.0 111 352-466 84-198 (311)
151 KOG0291 WD40-repeat-containing 87.4 93 0.002 39.4 26.1 72 397-468 352-425 (893)
152 PF00651 BTB: BTB/POZ domain; 87.2 1.1 2.4E-05 42.2 5.5 52 549-600 57-110 (111)
153 KOG0943 Predicted ubiquitin-pr 86.4 0.069 1.5E-06 67.2 -4.1 136 186-329 372-509 (3015)
154 KOG0291 WD40-repeat-containing 85.5 1.2E+02 0.0025 38.6 24.8 109 259-379 312-422 (893)
155 TIGR03300 assembly_YfgL outer 85.0 68 0.0015 37.3 19.9 55 405-462 320-376 (377)
156 KOG0943 Predicted ubiquitin-pr 84.9 0.23 5E-06 62.8 -0.7 125 298-422 374-504 (3015)
157 KOG1987 Speckle-type POZ prote 83.9 0.89 1.9E-05 51.4 3.5 65 547-614 180-246 (297)
158 KOG3669 Uncharacterized conser 83.5 98 0.0021 38.1 19.8 107 254-376 190-299 (705)
159 PF04841 Vps16_N: Vps16, N-ter 83.2 1.1E+02 0.0024 36.6 22.6 198 247-467 81-289 (410)
160 KOG0315 G-protein beta subunit 82.9 84 0.0018 35.0 17.8 99 362-465 137-245 (311)
161 PF11822 DUF3342: Domain of un 81.8 2 4.4E-05 48.9 5.2 81 545-627 47-129 (317)
162 TIGR03548 mutarot_permut cycli 81.0 27 0.00059 39.9 14.2 17 408-424 217-233 (323)
163 PHA02713 hypothetical protein; 79.8 2.1 4.5E-05 53.2 4.8 54 551-605 74-127 (557)
164 KOG0646 WD40 repeat protein [G 79.5 61 0.0013 38.7 16.0 155 248-421 83-245 (476)
165 PHA03098 kelch-like protein; P 77.9 2.5 5.5E-05 51.8 4.8 52 552-603 55-107 (534)
166 cd00200 WD40 WD40 domain, foun 77.6 95 0.0021 32.4 27.2 215 198-462 64-288 (289)
167 KOG4441 Proteins containing BT 77.3 26 0.00057 43.7 13.4 103 366-468 423-534 (571)
168 PHA02790 Kelch-like protein; P 75.3 3.7 8.1E-05 49.9 5.3 58 551-608 69-127 (480)
169 PLN02193 nitrile-specifier pro 74.1 1.2E+02 0.0026 36.9 17.7 59 406-466 321-387 (470)
170 KOG2075 Topoisomerase TOP1-int 74.0 5.6 0.00012 47.3 5.9 51 555-605 170-221 (521)
171 PF04762 IKI3: IKI3 family; I 73.7 2.3E+02 0.005 37.7 21.1 188 297-499 426-630 (928)
172 KOG0293 WD40 repeat-containing 68.3 63 0.0014 38.2 12.4 111 397-511 397-515 (519)
173 PF07569 Hira: TUP1-like enhan 66.8 21 0.00046 38.9 8.2 31 351-381 12-42 (219)
174 KOG1274 WD40 repeat protein [G 66.7 84 0.0018 40.5 13.9 144 305-466 13-169 (933)
175 TIGR03548 mutarot_permut cycli 64.0 57 0.0012 37.3 11.5 104 362-466 116-233 (323)
176 KOG1900 Nuclear pore complex, 64.0 50 0.0011 44.1 11.7 141 310-463 92-270 (1311)
177 KOG2106 Uncharacterized conser 62.2 3.7E+02 0.008 32.9 23.7 69 395-463 449-519 (626)
178 KOG1274 WD40 repeat protein [G 61.6 4.8E+02 0.01 34.1 23.5 231 156-424 27-263 (933)
179 KOG1587 Cytoplasmic dynein int 61.1 4.2E+02 0.0091 33.2 20.2 109 359-468 358-475 (555)
180 PF12065 DUF3545: Protein of u 61.0 7.7 0.00017 33.4 2.6 31 702-750 21-51 (59)
181 TIGR01063 gyrA DNA gyrase, A s 57.9 2.3E+02 0.0049 37.2 16.3 150 306-462 545-715 (800)
182 PF06128 Shigella_OspC: Shigel 57.6 16 0.00035 39.8 4.9 92 28-124 180-280 (284)
183 PF06128 Shigella_OspC: Shigel 57.0 15 0.00033 39.9 4.7 49 38-90 228-280 (284)
184 PLN02153 epithiospecifier prot 55.9 3.7E+02 0.008 30.9 20.1 58 406-465 186-260 (341)
185 PRK05560 DNA gyrase subunit A; 55.3 2.3E+02 0.005 37.1 15.8 153 305-462 546-718 (805)
186 PF04762 IKI3: IKI3 family; I 52.1 7.3E+02 0.016 33.2 25.8 87 364-465 549-639 (928)
187 KOG1900 Nuclear pore complex, 52.0 2.1E+02 0.0046 38.6 14.3 203 201-423 93-340 (1311)
188 PRK11138 outer membrane biogen 50.5 4.8E+02 0.01 30.6 20.8 57 405-463 335-392 (394)
189 PF07569 Hira: TUP1-like enhan 50.0 44 0.00095 36.5 7.0 71 436-506 11-92 (219)
190 PRK14131 N-acetylneuraminic ac 49.0 3.4E+02 0.0075 31.8 14.9 18 362-379 131-148 (376)
191 smart00225 BTB Broad-Complex, 46.5 21 0.00046 31.2 3.4 44 551-594 46-90 (90)
192 COG4257 Vgb Streptogramin lyas 45.4 1.4E+02 0.0031 33.8 9.9 139 196-376 62-205 (353)
193 PLN02193 nitrile-specifier pro 45.3 6.4E+02 0.014 30.6 22.2 16 198-214 168-183 (470)
194 KOG0293 WD40 repeat-containing 43.0 2.8E+02 0.0061 33.0 12.1 108 352-466 396-514 (519)
195 KOG1408 WD40 repeat protein [F 41.4 4.6E+02 0.01 33.5 14.1 27 298-324 218-248 (1080)
196 PLN00033 photosystem II stabil 40.4 7.2E+02 0.016 29.8 17.3 184 303-504 104-304 (398)
197 KOG1408 WD40 repeat protein [F 40.3 3.3E+02 0.0071 34.7 12.6 103 252-378 138-248 (1080)
198 KOG1587 Cytoplasmic dynein int 38.3 9.1E+02 0.02 30.3 20.1 116 305-430 358-479 (555)
199 PHA02414 hypothetical protein 38.3 41 0.00089 31.7 3.8 32 698-732 3-34 (111)
200 PF11929 DUF3447: Domain of un 37.8 50 0.0011 29.7 4.3 47 29-86 8-54 (76)
201 PRK05560 DNA gyrase subunit A; 37.1 1.1E+03 0.024 31.0 22.0 211 194-423 545-772 (805)
202 KOG2280 Vacuolar assembly/sort 35.7 3.9E+02 0.0086 34.3 12.5 145 307-464 93-245 (829)
203 PF08138 Sex_peptide: Sex pept 34.5 16 0.00034 30.7 0.5 9 895-903 46-54 (56)
204 PF00167 FGF: Fibroblast growt 34.1 4.1E+02 0.009 25.9 10.5 67 354-423 2-69 (122)
205 KOG1230 Protein containing rep 33.2 6.7E+02 0.015 30.2 13.2 19 405-423 233-251 (521)
206 KOG0646 WD40 repeat protein [G 32.4 9.9E+02 0.022 29.0 18.0 153 298-465 82-247 (476)
207 PF10168 Nup88: Nuclear pore c 32.3 1.2E+03 0.027 30.1 17.5 25 298-322 147-176 (717)
208 KOG2280 Vacuolar assembly/sort 31.4 9.5E+02 0.021 31.1 14.8 72 396-468 217-290 (829)
209 KOG0294 WD40 repeat-containing 31.3 8.9E+02 0.019 28.2 18.3 250 177-473 29-289 (362)
210 PF03158 DUF249: Multigene fam 30.5 74 0.0016 33.9 4.7 84 29-119 106-191 (192)
211 KOG0316 Conserved WD40 repeat- 30.1 8.2E+02 0.018 27.4 17.5 180 299-506 103-296 (307)
212 COG4257 Vgb Streptogramin lyas 30.1 4.4E+02 0.0096 30.1 10.6 135 306-462 62-205 (353)
213 smart00706 TECPR Beta propelle 28.9 87 0.0019 23.6 3.7 25 188-212 8-33 (35)
214 PF00167 FGF: Fibroblast growt 28.8 3.8E+02 0.0082 26.2 9.2 66 398-463 2-67 (122)
215 KOG0274 Cdc4 and related F-box 28.2 1.3E+03 0.027 28.9 23.9 217 255-506 260-479 (537)
216 PF11929 DUF3447: Domain of un 28.2 24 0.00052 31.7 0.6 47 66-120 8-54 (76)
217 TIGR03300 assembly_YfgL outer 27.8 9.9E+02 0.021 27.6 27.1 19 448-466 321-339 (377)
218 smart00706 TECPR Beta propelle 27.0 1E+02 0.0023 23.1 3.8 25 298-322 8-33 (35)
219 TIGR01062 parC_Gneg DNA topois 26.7 1.2E+03 0.025 30.5 15.1 139 310-462 497-651 (735)
220 KOG1539 WD repeat protein [Gen 26.2 1.6E+03 0.034 29.4 20.6 165 233-424 22-191 (910)
221 PRK13979 DNA topoisomerase IV 26.0 1.7E+03 0.038 29.9 20.4 158 256-422 516-688 (957)
222 PF02166 Androgen_recep: Andro 25.7 23 0.0005 40.4 0.0 15 869-883 318-332 (423)
223 KOG1538 Uncharacterized conser 25.4 5.1E+02 0.011 32.8 10.9 32 190-221 15-47 (1081)
224 TIGR01063 gyrA DNA gyrase, A s 24.7 1.7E+03 0.037 29.3 22.9 204 195-423 544-769 (800)
225 KOG0804 Cytoplasmic Zn-finger 24.2 48 0.0011 39.4 2.2 136 695-869 357-493 (493)
226 PF12017 Tnp_P_element: Transp 23.9 98 0.0021 34.3 4.4 37 696-734 29-65 (236)
227 PTZ00421 coronin; Provisional 23.8 1.4E+03 0.031 28.1 28.4 121 293-424 71-199 (493)
228 PF06433 Me-amine-dh_H: Methyl 23.8 1.2E+03 0.025 27.5 13.1 316 145-499 7-342 (342)
229 KOG1240 Protein kinase contain 23.7 2.1E+03 0.045 29.9 17.3 76 247-327 1049-1130(1431)
230 COG5420 Uncharacterized conser 23.0 3.8E+02 0.0083 23.6 6.7 52 694-745 8-67 (71)
231 TIGR01061 parC_Gpos DNA topois 22.7 1.7E+03 0.036 29.1 15.6 115 304-423 539-666 (738)
232 PRK14131 N-acetylneuraminic ac 22.6 3.6E+02 0.0078 31.6 9.2 19 406-424 131-149 (376)
233 PF10168 Nup88: Nuclear pore c 22.5 1.8E+03 0.039 28.7 16.7 117 258-376 34-176 (717)
234 KOG0299 U3 snoRNP-associated p 21.8 2.2E+02 0.0047 34.3 6.8 47 694-740 69-115 (479)
235 KOG0296 Angio-associated migra 21.4 1.4E+03 0.03 27.1 19.8 51 413-466 306-357 (399)
236 PLN00181 protein SPA1-RELATED; 21.4 1.9E+03 0.04 28.5 31.3 179 258-465 547-738 (793)
237 KOG0289 mRNA splicing factor [ 21.2 1.5E+03 0.033 27.5 13.2 143 203-376 311-459 (506)
238 PF08450 SGL: SMP-30/Gluconola 21.2 1E+03 0.023 25.5 22.1 134 364-499 90-245 (246)
239 KOG1240 Protein kinase contain 20.5 7.9E+02 0.017 33.5 11.8 159 298-464 1049-1224(1431)
240 PF04841 Vps16_N: Vps16, N-ter 20.4 1.5E+03 0.032 27.0 21.4 196 189-424 82-288 (410)
241 KOG2675 Adenylate cyclase-asso 20.4 80 0.0017 37.6 3.0 49 695-751 105-153 (480)
242 PF04568 IATP: Mitochondrial A 20.0 1.3E+02 0.0028 29.0 3.8 15 696-710 69-83 (100)
No 1
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=100.00 E-value=2.6e-54 Score=498.72 Aligned_cols=389 Identities=29% Similarity=0.475 Sum_probs=318.4
Q ss_pred CCcccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCccccccccccccccchhhhhccccccccccCCCCCCc
Q 001476 56 NINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRALHFGHLAVASVLLQSGASITLEDCKSRTPV 135 (1071)
Q Consensus 56 din~~d~~G~TpLH~Aa~~g~~eivk~LL~~GAd~~~~d~~~G~TpL~~A~~~G~~~iv~lLl~~Ga~v~l~d~~G~tPL 135 (1071)
-+|.+|..|+|+||+|+..+...++++||.+|+|++.+|.+.|+||||.|.++|+++|+.+|+.+|+++.+.|.+|..|+
T Consensus 44 ~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dkeglspl 123 (1267)
T KOG0783|consen 44 LANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDKEGLSPL 123 (1267)
T ss_pred hhhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEecccCCCHH
Confidence 37889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCceeeeccccccccceeeeccCCcccccCCCCcccccCCceeccCC--CceEEEEecCCceEEEEecCCcEEEEe
Q 001476 136 DLLSGPVLQVVGSGYNSVATEVFSWGSGANYQLGTGNAHLQKLPCKVDSLH--GFVIKLISAAKFHSVAVTSLGEVYTWG 213 (1071)
Q Consensus 136 dl~sg~v~qa~~~~~~~~~g~VYsWGsN~~GQLG~G~~~~~~~P~~V~~l~--~~~I~~Va~G~~HslaLT~dG~Vy~WG 213 (1071)
++++--...... -......+||+||.|.+..||+|+......|..|+.+. |.-+.+|+.|.+|++++++.|+||+||
T Consensus 124 q~~~r~~~~~i~-~~~d~pndvy~wG~N~N~tLGign~~~~~~Pe~Vdlf~~Sg~~~~qV~l~kfHSvfl~~kgqvY~cG 202 (1267)
T KOG0783|consen 124 QFLSRVLSSTIH-PVLDLPNDVYGWGTNVNNTLGIGNGKEPSSPERVDLFKTSGQLFSQVQLSKFHSVFLTEKGQVYVCG 202 (1267)
T ss_pred HHHhhccccccc-cccCCccceeEecccccccccccCCCCCCChHHhHHHHhccHHHHHHHHhhceeeEecCCCcEEEec
Confidence 998752111110 01112369999999999999999999999999999775 456889999999999999999999999
Q ss_pred cCCCCCCCCCCCccCCCCcceeeeeeeecCCCCCCEEEEEecCceEEEEEcCCcEEEEeCCCCCCcCCCCCC-CCCccee
Q 001476 214 YGRGGRLGHPDFDIHSGQAAVITPRRVTSGLGSRRVKTIAAAKHHTVLATEGGEVFTWGSNREGQLGYTSVD-TQPTPRR 292 (1071)
Q Consensus 214 ~N~~GQLG~g~~~~~s~~~~~~~P~~V~~~l~~~~Iv~IAcG~~HslaLT~dG~VyswG~N~~GQLG~g~~~-~~~~P~~ 292 (1071)
.+..|+||+|+. ...+.|++|. ++.+.+|.+|++...|+++||++|.||+||.|.++|||..+.. ....|.+
T Consensus 203 hG~GGRlG~gde------q~~~iPkrV~-gL~gh~~~qisvs~~HslvLT~~g~Vys~GlN~~hqLG~~~~~~~~~~p~q 275 (1267)
T KOG0783|consen 203 HGAGGRLGFGDE------QYNFIPKRVP-GLIGHKVIQISVSHTHSLVLTKFGSVYSWGLNGSHQLGLSNDELKKDDPIQ 275 (1267)
T ss_pred cCCCCccCcCcc------cccccccccc-cccccceEEEEeecceeEEEeecceEEEeecCcccccCCcCchhhcCchhh
Confidence 999999999954 4678899998 7889999999999999999999999999999999999987433 3455555
Q ss_pred ec-----cCcccEEEEEEcCCceeEEecCCcEEEEeCCCCCCcCCCCCCCCCcccceeeeccCCCCEEEEEecCCeEEEE
Q 001476 293 VS-----SLKLKIIAVAAANKHTAVVSESGEVFTWGCNREGQLGYGTSNSASNYTPRVVESLKGKDLVGVAAAKYHTIVL 367 (1071)
Q Consensus 293 V~-----~l~~~Iv~VacG~~HSlaLt~dG~VY~WG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~I~~IaaG~~hTlaL 367 (1071)
|. ++. .|+.|++|..|+++.|+. .||+||.| .||||..+. ...+.+|+.+-. ....|..|.|....|+++
T Consensus 276 I~a~r~kg~~-~iIgvaAg~~hsVawt~~-~VY~wGlN-~GQlGi~~n-~~~Vt~Pr~l~~-~~~~v~~v~a~~~ATVc~ 350 (1267)
T KOG0783|consen 276 ITARRIKGFK-QIIGVAAGKSHSVAWTDT-DVYSWGLN-NGQLGISDN-ISVVTTPRRLAG-LLSPVIHVVATTRATVCL 350 (1267)
T ss_pred hhhHhhcchh-hhhhhhcccceeeeeecc-eEEEeccc-CceecCCCC-Cceeecchhhcc-cccceEEEEecCccEEEE
Confidence 54 333 799999999999999975 69999999 899998765 344667876643 235799999999999999
Q ss_pred eeCCcEEEEecCCCCCCC-------------ccceeccccCCcEEEEEeCCCcceEEecCCcEEEEeCCCCCCceeeeee
Q 001476 368 GADGERVIVARNLKKSGS-------------TPLKFHRKIKLHVVSIAAGMVHSTALTEDGALFYWASSDPDLRCQQLYS 434 (1071)
Q Consensus 368 t~dG~Vy~wG~n~~~~~~-------------~P~~~~~~~~~~I~~Ia~G~~hslaLt~dG~Vy~WG~n~~~~~p~~v~~ 434 (1071)
+.+|.+|++......-.. -|+... ..++.+..+.....+++|+-|.||+|-+++.....-....
T Consensus 351 ~~~~~i~~~ady~~~k~~~n~~~lks~~V~gg~l~~~---~~~~~k~~a~~~kll~lte~g~Vy~w~s~ns~~~~c~ftp 427 (1267)
T KOG0783|consen 351 LQNNSIIAFADYNQVKLPFNVDFLKSLKVTGGPLSLT---RFNVRKLLASENKLLVLTELGEVYEWDSKNSTRTSCKFTP 427 (1267)
T ss_pred ecCCcEEEEecccceecCcchhccceeEEecCccchh---hhhhhhcchhhhheeeeccCCeEEEEecCCCceeeeeccc
Confidence 999999998764211111 011111 1256677777888999999999999998876543322222
Q ss_pred cCCceeEEEEeCCcEEEEEeeCCcEE
Q 001476 435 MCGRNVVSISAGKYWTAAVTATGDVY 460 (1071)
Q Consensus 435 l~g~~Vv~IaaG~~hs~aLT~dG~Vy 460 (1071)
+.-..|.+|+--.+..+++|.||.+|
T Consensus 428 ~r~~~isdIa~~~N~~~~~t~dGc~~ 453 (1267)
T KOG0783|consen 428 LRIFEISDIAWTANSLILCTRDGCWK 453 (1267)
T ss_pred ceeeehhhhhhccceEEEEecCccee
Confidence 22245668887889999999999444
No 2
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=100.00 E-value=3.7e-39 Score=363.14 Aligned_cols=341 Identities=27% Similarity=0.394 Sum_probs=262.6
Q ss_pred ceeeeccCCcccccCCCCcccc-cCCceeccC--CCceEEEEecCCceEEEEecCCcEEEEecCCCCCCCCCCC-cc---
Q 001476 155 TEVFSWGSGANYQLGTGNAHLQ-KLPCKVDSL--HGFVIKLISAAKFHSVAVTSLGEVYTWGYGRGGRLGHPDF-DI--- 227 (1071)
Q Consensus 155 g~VYsWGsN~~GQLG~G~~~~~-~~P~~V~~l--~~~~I~~Va~G~~HslaLT~dG~Vy~WG~N~~GQLG~g~~-~~--- 227 (1071)
..||+||+|..+|||.|..... ..|+.+... +...|++++||+.|+++|++||+||+||.|..|+||.... +.
T Consensus 68 ~~v~~~Gsn~~~eLGlg~de~~~~~P~~~~~~~~d~~~i~~~acGg~hsl~ld~Dg~lyswG~N~~G~Lgr~~~~~~~~~ 147 (476)
T COG5184 68 ASVYSWGSNGMNELGLGNDETKVDRPQLNPFGRIDKASIIKIACGGNHSLGLDHDGNLYSWGDNDDGALGRDIHKDICDQ 147 (476)
T ss_pred eeeEEEecCcceeeccCCchhcccCceecCcccccceeeEEeecCCceEEeecCCCCEEEeccCcccccccccccccccc
Confidence 6899999999999999987665 788888776 6678999999999999999999999999999999998651 00
Q ss_pred ------CCCCcceeeeeeeec---CCCCCCEEEEEecCceEEEEEcCCcEEEEeCCCCCCcCCCCCCCC------Cccee
Q 001476 228 ------HSGQAAVITPRRVTS---GLGSRRVKTIAAAKHHTVLATEGGEVFTWGSNREGQLGYTSVDTQ------PTPRR 292 (1071)
Q Consensus 228 ------~s~~~~~~~P~~V~~---~l~~~~Iv~IAcG~~HslaLT~dG~VyswG~N~~GQLG~g~~~~~------~~P~~ 292 (1071)
........+|..|.. .....+|++++||++++++|+++|+||+||.+..+.++.+...+. .+|..
T Consensus 148 ~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~cg~e~svil~~~G~V~~~gt~r~~e~~~g~~~~s~k~~~~~~p~~ 227 (476)
T COG5184 148 NNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTFRCGELGQGSYKNSQKTSIQFTPLK 227 (476)
T ss_pred cccccccchhhcccCCceeeccccccCChheEEeecCCceEEEEccCCcEEEecCccccccccccccccccceeeeeeee
Confidence 012224567777772 122348999999999999999999999999999998888743332 33444
Q ss_pred eccCcccEEEEEEcCCceeEEecCCcEEEEeCCCCCCcCCCCCCCCCcccceeee-ccCCCCEEEEEecCCeEEEEeeCC
Q 001476 293 VSSLKLKIIAVAAANKHTAVVSESGEVFTWGCNREGQLGYGTSNSASNYTPRVVE-SLKGKDLVGVAAAKYHTIVLGADG 371 (1071)
Q Consensus 293 V~~l~~~Iv~VacG~~HSlaLt~dG~VY~WG~N~~GQLG~g~~~~~~~~~P~~V~-~l~~~~I~~IaaG~~hTlaLt~dG 371 (1071)
+. ...|+++++|.+|.++|+++|+||+||+|..||||........ .+..+. .+.-..|..|+||.+|+++|+++|
T Consensus 228 v~--~~~i~qla~G~dh~i~lt~~G~vy~~Gs~qkgqlG~~~~e~~~--~~~lv~~~f~i~~i~~vacG~~h~~al~~~G 303 (476)
T COG5184 228 VP--KKAIVQLAAGADHLIALTNEGKVYGWGSNQKGQLGRPTSERLK--LVVLVGDPFAIRNIKYVACGKDHSLALDEDG 303 (476)
T ss_pred cC--chheeeeccCCceEEEEecCCcEEEecCCcccccCCchhhhcc--cccccCChhhhhhhhhcccCcceEEEEcCCC
Confidence 43 4579999999999999999999999999999999998765422 222222 222335889999999999999999
Q ss_pred cEEEEecCCCCCCCcc-------ce-----eccccCCcEEEEEeCCCcceEEecCCcEEEEeCCCCCC-ce-----eee-
Q 001476 372 ERVIVARNLKKSGSTP-------LK-----FHRKIKLHVVSIAAGMVHSTALTEDGALFYWASSDPDL-RC-----QQL- 432 (1071)
Q Consensus 372 ~Vy~wG~n~~~~~~~P-------~~-----~~~~~~~~I~~Ia~G~~hslaLt~dG~Vy~WG~n~~~~-~p-----~~v- 432 (1071)
++|+||.|..++...+ .. ........|..|++|..|+++|..+|.||.||.++... .. ..+
T Consensus 304 ~i~a~G~n~fgqlg~~~~~~~~a~~tk~~~~~~~~~~~i~~is~ge~H~l~L~~~G~l~a~Gr~~~~qlg~~~~~~~~~~ 383 (476)
T COG5184 304 EIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQLLSGVTICSISAGESHSLILRKDGTLYAFGRGDRGQLGIQEEITIDVS 383 (476)
T ss_pred eEEEeccchhcccccCcccccceeeccccccccCCCceEEEEecCcceEEEEecCceEEEecCCccccccCcccceeecC
Confidence 9999999977766655 11 11112335899999999999999999999999987432 11 111
Q ss_pred --eecC-CceeEEEEeCCcEEEEEeeCCcEEEecCCCCCC--------CCCceEEec----CcccEEEEEecCCeEEEEE
Q 001476 433 --YSMC-GRNVVSISAGKYWTAAVTATGDVYMWDGKKSKD--------NPPLVTRLH----GIKKATSVSVGETHLLIVG 497 (1071)
Q Consensus 433 --~~l~-g~~Vv~IaaG~~hs~aLT~dG~Vy~WG~N~~~~--------~~~~p~~v~----g~~~V~~Va~G~~HtlaL~ 497 (1071)
..+. ..++.+|+||..|+++.+.+|+||.||.+..++ ....|+.+. ...+++...||..+.++..
T Consensus 384 ~~~~ls~~~~~~~v~~gt~~~~~~t~~gsvy~wG~ge~gnlG~g~~~~~~~~pt~i~~~~~~~~~~i~~g~~~~~~v~~~ 463 (476)
T COG5184 384 TPTKLSVAIKLEQVACGTHHNIARTDDGSVYSWGWGEHGNLGNGPKEADVLVPTLIRQPLLSGHNIILAGYGNQFSVIEE 463 (476)
T ss_pred CccccccccceEEEEecCccceeeccCCceEEecCchhhhccCCchhhhccccccccccccCCCceEEeccCcceEEEec
Confidence 1122 246999999999999999999999999887543 334455554 3457778888877777765
Q ss_pred eC
Q 001476 498 SL 499 (1071)
Q Consensus 498 s~ 499 (1071)
..
T Consensus 464 ~~ 465 (476)
T COG5184 464 TM 465 (476)
T ss_pred ch
Confidence 43
No 3
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=100.00 E-value=2.7e-36 Score=340.12 Aligned_cols=315 Identities=23% Similarity=0.361 Sum_probs=252.9
Q ss_pred CceEEEEecCCcEEEEecCCCCCCCCCCCccCCCCcceeeeeeeecCC-CCCCEEEEEecCceEEEEEcCCcEEEEeCCC
Q 001476 197 KFHSVAVTSLGEVYTWGYGRGGRLGHPDFDIHSGQAAVITPRRVTSGL-GSRRVKTIAAAKHHTVLATEGGEVFTWGSNR 275 (1071)
Q Consensus 197 ~~HslaLT~dG~Vy~WG~N~~GQLG~g~~~~~s~~~~~~~P~~V~~~l-~~~~Iv~IAcG~~HslaLT~dG~VyswG~N~ 275 (1071)
..|...++.-+.||+||.|..++||.+.. ...+..|++.+... ....|++++||..|+++|++||.||+||.|.
T Consensus 58 ~~~~~~~~~~~~v~~~Gsn~~~eLGlg~d-----e~~~~~P~~~~~~~~d~~~i~~~acGg~hsl~ld~Dg~lyswG~N~ 132 (476)
T COG5184 58 NKHTHLLVKMASVYSWGSNGMNELGLGND-----ETKVDRPQLNPFGRIDKASIIKIACGGNHSLGLDHDGNLYSWGDND 132 (476)
T ss_pred ccchhhhhheeeeEEEecCcceeeccCCc-----hhcccCceecCcccccceeeEEeecCCceEEeecCCCCEEEeccCc
Confidence 45666888899999999999999999854 22367787776221 4578999999999999999999999999999
Q ss_pred CCCcCCCCC----------------CCCCcceeeccCc-----ccEEEEEEcCCceeEEecCCcEEEEeCCCCCCcCCCC
Q 001476 276 EGQLGYTSV----------------DTQPTPRRVSSLK-----LKIIAVAAANKHTAVVSESGEVFTWGCNREGQLGYGT 334 (1071)
Q Consensus 276 ~GQLG~g~~----------------~~~~~P~~V~~l~-----~~Iv~VacG~~HSlaLt~dG~VY~WG~N~~GQLG~g~ 334 (1071)
.|+||.... ....+|..|.... .+|++++||++++++++++|+||.||.+..+.++.+.
T Consensus 133 ~G~Lgr~~~~~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~cg~e~svil~~~G~V~~~gt~r~~e~~~g~ 212 (476)
T COG5184 133 DGALGRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTFRCGELGQGS 212 (476)
T ss_pred ccccccccccccccccccccccchhhcccCCceeeccccccCChheEEeecCCceEEEEccCCcEEEecCcccccccccc
Confidence 999998641 1245788887622 3799999999999999999999999999999998885
Q ss_pred CCCCCc----ccceeeeccCCCCEEEEEecCCeEEEEeeCCcEEEEecCCCCCCCcccee--------ccccC-CcEEEE
Q 001476 335 SNSASN----YTPRVVESLKGKDLVGVAAAKYHTIVLGADGERVIVARNLKKSGSTPLKF--------HRKIK-LHVVSI 401 (1071)
Q Consensus 335 ~~~~~~----~~P~~V~~l~~~~I~~IaaG~~hTlaLt~dG~Vy~wG~n~~~~~~~P~~~--------~~~~~-~~I~~I 401 (1071)
...... ++|..+. ...|+++++|.+|.++|+.+|++|.||++..++...|+.. ..+.. ..|..|
T Consensus 213 ~~~s~k~~~~~~p~~v~---~~~i~qla~G~dh~i~lt~~G~vy~~Gs~qkgqlG~~~~e~~~~~~lv~~~f~i~~i~~v 289 (476)
T COG5184 213 YKNSQKTSIQFTPLKVP---KKAIVQLAAGADHLIALTNEGKVYGWGSNQKGQLGRPTSERLKLVVLVGDPFAIRNIKYV 289 (476)
T ss_pred ccccccceeeeeeeecC---chheeeeccCCceEEEEecCCcEEEecCCcccccCCchhhhcccccccCChhhhhhhhhc
Confidence 444333 4555554 4679999999999999999999999999987776654211 11111 157889
Q ss_pred EeCCCcceEEecCCcEEEEeCCCCCC--------------ceeeeeecCCceeEEEEeCCcEEEEEeeCCcEEEecCCCC
Q 001476 402 AAGMVHSTALTEDGALFYWASSDPDL--------------RCQQLYSMCGRNVVSISAGKYWTAAVTATGDVYMWDGKKS 467 (1071)
Q Consensus 402 a~G~~hslaLt~dG~Vy~WG~n~~~~--------------~p~~v~~l~g~~Vv~IaaG~~hs~aLT~dG~Vy~WG~N~~ 467 (1071)
+||.+|+++|+++|.||+||.|-.+. .+.....+.+..|..|++|..|+++|..+|.||.||.+..
T Consensus 290 acG~~h~~al~~~G~i~a~G~n~fgqlg~~~~~~~~a~~tk~~~~~~~~~~~i~~is~ge~H~l~L~~~G~l~a~Gr~~~ 369 (476)
T COG5184 290 ACGKDHSLALDEDGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQLLSGVTICSISAGESHSLILRKDGTLYAFGRGDR 369 (476)
T ss_pred ccCcceEEEEcCCCeEEEeccchhcccccCcccccceeeccccccccCCCceEEEEecCcceEEEEecCceEEEecCCcc
Confidence 99999999999999999999885332 2333344556679999999999999999999999998875
Q ss_pred CC---------CCCceEEecCcccEEEEEecCCeEEEEEeCCCCccCCCCCCCCCccccCCC
Q 001476 468 KD---------NPPLVTRLHGIKKATSVSVGETHLLIVGSLYHPIYPPNVAKNPQKLKLNGR 520 (1071)
Q Consensus 468 ~~---------~~~~p~~v~g~~~V~~Va~G~~HtlaL~s~~~~v~~wG~~~~gq~g~l~~~ 520 (1071)
++ ..+.|..+.....+.+|+||..|+++.+.. +.+|+||+++||++|.....
T Consensus 370 ~qlg~~~~~~~~~~~~~~ls~~~~~~~v~~gt~~~~~~t~~-gsvy~wG~ge~gnlG~g~~~ 430 (476)
T COG5184 370 GQLGIQEEITIDVSTPTKLSVAIKLEQVACGTHHNIARTDD-GSVYSWGWGEHGNLGNGPKE 430 (476)
T ss_pred ccccCcccceeecCCccccccccceEEEEecCccceeeccC-CceEEecCchhhhccCCchh
Confidence 54 344556666677899999999999999998 59999999999999855544
No 4
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown]
Probab=100.00 E-value=1.5e-36 Score=321.49 Aligned_cols=338 Identities=22% Similarity=0.354 Sum_probs=269.8
Q ss_pred ceeeeccCCcccccCCCCc---ccccCCceeccCCCceEEEEecC--CceEEEEecCCcEEEEecCCCCCCCCCCCccCC
Q 001476 155 TEVFSWGSGANYQLGTGNA---HLQKLPCKVDSLHGFVIKLISAA--KFHSVAVTSLGEVYTWGYGRGGRLGHPDFDIHS 229 (1071)
Q Consensus 155 g~VYsWGsN~~GQLG~G~~---~~~~~P~~V~~l~~~~I~~Va~G--~~HslaLT~dG~Vy~WG~N~~GQLG~g~~~~~s 229 (1071)
|++..+|.-..-+.|--+. .....|.++..+.+.+|..|+.| ..|+++|+-+|+.|.||+|..||||+++.
T Consensus 20 g~ml~~g~v~wd~tgkRd~~~~~NL~sphR~~~l~gv~iR~VasG~~aaH~vli~megk~~~wGRNekGQLGhgD~---- 95 (443)
T KOG1427|consen 20 GEMLFCGAVAWDITGKRDGAMEGNLVSPHRLRPLVGVNIRFVASGCAAAHCVLIDMEGKCYTWGRNEKGQLGHGDM---- 95 (443)
T ss_pred ccEEEeccchhhhhcccccccccccccceeccccccceEEEEecccchhhEEEEecccceeecccCccCccCccch----
Confidence 5666666555555553222 23457888888999999999987 78999999999999999999999999965
Q ss_pred CCcceeeeeeeecCCCCCCEEEEEecCceEEEEEcCCcEEEEeCCCCCCcCCCCCC-CCCcceeeccCcccEEEEEEcCC
Q 001476 230 GQAAVITPRRVTSGLGSRRVKTIAAAKHHTVLATEGGEVFTWGSNREGQLGYTSVD-TQPTPRRVSSLKLKIIAVAAANK 308 (1071)
Q Consensus 230 ~~~~~~~P~~V~~~l~~~~Iv~IAcG~~HslaLT~dG~VyswG~N~~GQLG~g~~~-~~~~P~~V~~l~~~Iv~VacG~~ 308 (1071)
.....|+.|. .|...+|++.+||++|+++||++|.||+||.|.+||||+++.. ....|..+.-....|+.|+||..
T Consensus 96 --k~~e~Ptvi~-gL~~~~iv~AA~GrnHTl~ltdtG~v~afGeNK~GQlGlgn~~~~v~s~~~~~~~~~~v~~v~cga~ 172 (443)
T KOG1427|consen 96 --KQRERPTVIS-GLSKHKIVKAAAGRNHTLVLTDTGQVLAFGENKYGQLGLGNAKNEVESTPLPCVVSDEVTNVACGAD 172 (443)
T ss_pred --hhccCCchhh-hhhhhhHHHHhhccCcEEEEecCCcEEEecccccccccccccccccccCCCccccCccceeeccccc
Confidence 4556788887 8888999999999999999999999999999999999999644 34445444444568999999999
Q ss_pred ceeEEecCCcEEEEeCCCCCCcCCCCCCCC------------CcccceeeeccCCCCEEEEEecCCeEEEEeeCCcEEEE
Q 001476 309 HTAVVSESGEVFTWGCNREGQLGYGTSNSA------------SNYTPRVVESLKGKDLVGVAAAKYHTIVLGADGERVIV 376 (1071)
Q Consensus 309 HSlaLt~dG~VY~WG~N~~GQLG~g~~~~~------------~~~~P~~V~~l~~~~I~~IaaG~~hTlaLt~dG~Vy~w 376 (1071)
+++.|+..+.+.++|.-.|||||+++.... ....|..|..+.+..|++++||.+||+++++++.||.|
T Consensus 173 ftv~l~~~~si~t~glp~ygqlgh~td~~~~~~~~~~~~~~e~~pr~~~i~~~dgvqiv~~acg~nhtvavd~nkrVysW 252 (443)
T KOG1427|consen 173 FTVWLSSTESILTAGLPQYGQLGHGTDNEFNMKDSSVRLAYEAQPRPKAIASLDGVQIVKVACGTNHTVAVDKNKRVYSW 252 (443)
T ss_pred eEEEeecccceeecCCccccccccCcchhhccccccceeeeecCCCccccccccceeeEEEeccCcceeeecCCccEEEe
Confidence 999999999999999999999999876432 13456677788899999999999999999999999999
Q ss_pred ecCCCCCCC--------cc--ceeccccCCcEEEEEeCCCcceEEecCCcEEEEeCCC----CCCceeeeeecCCceeEE
Q 001476 377 ARNLKKSGS--------TP--LKFHRKIKLHVVSIAAGMVHSTALTEDGALFYWASSD----PDLRCQQLYSMCGRNVVS 442 (1071)
Q Consensus 377 G~n~~~~~~--------~P--~~~~~~~~~~I~~Ia~G~~hslaLt~dG~Vy~WG~n~----~~~~p~~v~~l~g~~Vv~ 442 (1071)
|..-.+... .| +++......--.++.||+.+++.+.+-|.+|.||.+. ..+.|.++..+.+.++..
T Consensus 253 GFGGyGRLGHaEqKDEmvpRlik~Fd~~~rg~~~~~~g~t~Sl~v~e~G~Lf~~g~~k~~ge~~mypkP~~dlsgwnl~~ 332 (443)
T KOG1427|consen 253 GFGGYGRLGHAEQKDEMVPRLIKVFDRNNRGPPNAILGYTGSLNVAEGGQLFMWGKIKNNGEDWMYPKPMMDLSGWNLRW 332 (443)
T ss_pred ccccccccccccchhhHHHHHHHHhcCCCCCCcceeeecccceeecccceeEEeeccccCcccccCCCchhhcCCccCCC
Confidence 977544333 12 2233333345568999999999999999999999764 347888999999999999
Q ss_pred EEeCCcEEEEEeeCCcEEEecCCCC--------CC-CCCceEEecCcc--cEEEEEecCCeEEEEEeCC
Q 001476 443 ISAGKYWTAAVTATGDVYMWDGKKS--------KD-NPPLVTRLHGIK--KATSVSVGETHLLIVGSLY 500 (1071)
Q Consensus 443 IaaG~~hs~aLT~dG~Vy~WG~N~~--------~~-~~~~p~~v~g~~--~V~~Va~G~~HtlaL~s~~ 500 (1071)
+.||..|.++ ..|..+..||.... .| ....|..++-+. .|..|+||+.|+++|+...
T Consensus 333 ~~~~~~h~~v-~ad~s~i~wg~~~~g~~lggp~~Qkss~~Pk~v~~l~~i~v~~VamGysHs~vivd~t 400 (443)
T KOG1427|consen 333 MDSGSMHHFV-GADSSCISWGHAQYGELLGGPNGQKSSAAPKKVDMLEGIHVMGVAMGYSHSMVIVDRT 400 (443)
T ss_pred cCccceeeee-cccccccccccccccccccCccccccccCccccchhcceeccceeeccceEEEEEccc
Confidence 9999999755 56788999985432 11 223345555443 5678999999999998763
No 5
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown]
Probab=100.00 E-value=5.7e-35 Score=309.46 Aligned_cols=292 Identities=20% Similarity=0.350 Sum_probs=244.4
Q ss_pred ceeeeccCCcccccCCCCcccccCCceeccCCCceEEEEecCCceEEEEecCCcEEEEecCCCCCCCCCCCccCCCCcce
Q 001476 155 TEVFSWGSGANYQLGTGNAHLQKLPCKVDSLHGFVIKLISAAKFHSVAVTSLGEVYTWGYGRGGRLGHPDFDIHSGQAAV 234 (1071)
Q Consensus 155 g~VYsWGsN~~GQLG~G~~~~~~~P~~V~~l~~~~I~~Va~G~~HslaLT~dG~Vy~WG~N~~GQLG~g~~~~~s~~~~~ 234 (1071)
++.|+||.|..||||+|+...+..|+.|+.|...+|++-+||.+|+++||++|+||+||.|.+||||++.... .+
T Consensus 77 gk~~~wGRNekGQLGhgD~k~~e~Ptvi~gL~~~~iv~AA~GrnHTl~ltdtG~v~afGeNK~GQlGlgn~~~-----~v 151 (443)
T KOG1427|consen 77 GKCYTWGRNEKGQLGHGDMKQRERPTVISGLSKHKIVKAAAGRNHTLVLTDTGQVLAFGENKYGQLGLGNAKN-----EV 151 (443)
T ss_pred cceeecccCccCccCccchhhccCCchhhhhhhhhHHHHhhccCcEEEEecCCcEEEeccccccccccccccc-----cc
Confidence 7999999999999999988888999999999999999999999999999999999999999999999996522 23
Q ss_pred eeeeeeecCCCCCCEEEEEecCceEEEEEcCCcEEEEeCCCCCCcCCCCC--------------CCCCcceeeccCc-cc
Q 001476 235 ITPRRVTSGLGSRRVKTIAAAKHHTVLATEGGEVFTWGSNREGQLGYTSV--------------DTQPTPRRVSSLK-LK 299 (1071)
Q Consensus 235 ~~P~~V~~~l~~~~Iv~IAcG~~HslaLT~dG~VyswG~N~~GQLG~g~~--------------~~~~~P~~V~~l~-~~ 299 (1071)
..|.++ ..-...|..|+||..+++.|+..+.+.++|.-.|||||+++. ..++.|..|..+. ..
T Consensus 152 ~s~~~~--~~~~~~v~~v~cga~ftv~l~~~~si~t~glp~ygqlgh~td~~~~~~~~~~~~~~e~~pr~~~i~~~dgvq 229 (443)
T KOG1427|consen 152 ESTPLP--CVVSDEVTNVACGADFTVWLSSTESILTAGLPQYGQLGHGTDNEFNMKDSSVRLAYEAQPRPKAIASLDGVQ 229 (443)
T ss_pred ccCCCc--cccCccceeeccccceEEEeecccceeecCCccccccccCcchhhccccccceeeeecCCCcccccccccee
Confidence 333322 223468999999999999999999999999999999999842 2345666666665 67
Q ss_pred EEEEEEcCCceeEEecCCcEEEEeCCCCCCcCCCCCCCCCcccceeeecc--CCCCEEEEEecCCeEEEEeeCCcEEEEe
Q 001476 300 IIAVAAANKHTAVVSESGEVFTWGCNREGQLGYGTSNSASNYTPRVVESL--KGKDLVGVAAAKYHTIVLGADGERVIVA 377 (1071)
Q Consensus 300 Iv~VacG~~HSlaLt~dG~VY~WG~N~~GQLG~g~~~~~~~~~P~~V~~l--~~~~I~~IaaG~~hTlaLt~dG~Vy~wG 377 (1071)
|++|+||.+||++++++++||+||.+-||+||+.... ....|++|..| .+.--.++.||..+++.+.+-|.+|.||
T Consensus 230 iv~~acg~nhtvavd~nkrVysWGFGGyGRLGHaEqK--DEmvpRlik~Fd~~~rg~~~~~~g~t~Sl~v~e~G~Lf~~g 307 (443)
T KOG1427|consen 230 IVKVACGTNHTVAVDKNKRVYSWGFGGYGRLGHAEQK--DEMVPRLIKVFDRNNRGPPNAILGYTGSLNVAEGGQLFMWG 307 (443)
T ss_pred eEEEeccCcceeeecCCccEEEeccccccccccccch--hhHHHHHHHHhcCCCCCCcceeeecccceeecccceeEEee
Confidence 9999999999999999999999999999999997654 36789888765 3455678999999999999999999999
Q ss_pred cCCCCC--CCccceeccccCCcEEEEEeCCCcceEEecCCcEEEEeCCCCC------------CceeeeeecCCceeEEE
Q 001476 378 RNLKKS--GSTPLKFHRKIKLHVVSIAAGMVHSTALTEDGALFYWASSDPD------------LRCQQLYSMCGRNVVSI 443 (1071)
Q Consensus 378 ~n~~~~--~~~P~~~~~~~~~~I~~Ia~G~~hslaLt~dG~Vy~WG~n~~~------------~~p~~v~~l~g~~Vv~I 443 (1071)
.+.+.. -..|-++..+.+.++..+.||..|.++ ..|..+..||....+ ..|..+..+.+..|-.|
T Consensus 308 ~~k~~ge~~mypkP~~dlsgwnl~~~~~~~~h~~v-~ad~s~i~wg~~~~g~~lggp~~Qkss~~Pk~v~~l~~i~v~~V 386 (443)
T KOG1427|consen 308 KIKNNGEDWMYPKPMMDLSGWNLRWMDSGSMHHFV-GADSSCISWGHAQYGELLGGPNGQKSSAAPKKVDMLEGIHVMGV 386 (443)
T ss_pred ccccCcccccCCCchhhcCCccCCCcCccceeeee-cccccccccccccccccccCccccccccCccccchhcceeccce
Confidence 875433 335666777788899999999999875 466688899865321 34667777888899999
Q ss_pred EeCCcEEEEEeeC
Q 001476 444 SAGKYWTAAVTAT 456 (1071)
Q Consensus 444 aaG~~hs~aLT~d 456 (1071)
++|+.|+++|.++
T Consensus 387 amGysHs~vivd~ 399 (443)
T KOG1427|consen 387 AMGYSHSMVIVDR 399 (443)
T ss_pred eeccceEEEEEcc
Confidence 9999999998654
No 6
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.98 E-value=1.6e-32 Score=318.87 Aligned_cols=377 Identities=26% Similarity=0.356 Sum_probs=280.2
Q ss_pred CCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccC-CCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCcccccc
Q 001476 26 GVQKDLCLAVREGSLADVESALALLKKNGGNINSRN-IFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHR 104 (1071)
Q Consensus 26 ~g~TpLh~Aa~~G~~~~v~~iL~lLl~~Gadin~~d-~~G~TpLH~Aa~~g~~eivk~LL~~GAd~~~~d~~~G~TpL~~ 104 (1071)
-|.|+||+|+..+...+++ .|+.+|+|++.+| ..|+||||-|..+|+++|+-+||.+|+.+.++| +.|..||+.
T Consensus 51 ~GR~alH~~~S~~k~~~l~----wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~D-keglsplq~ 125 (1267)
T KOG0783|consen 51 YGRTALHIAVSENKNSFLR----WLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKD-KEGLSPLQF 125 (1267)
T ss_pred hccceeeeeeccchhHHHH----HHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEec-ccCCCHHHH
Confidence 4668899999999998888 8888999999999 679999999999999999999999999999999 999999998
Q ss_pred ccccccccch------hhhhcccccccc--c-----cCCCCCCcccCC--CC-ceeeecccccccc----ceeeeccCCc
Q 001476 105 ALHFGHLAVA------SVLLQSGASITL--E-----DCKSRTPVDLLS--GP-VLQVVGSGYNSVA----TEVFSWGSGA 164 (1071)
Q Consensus 105 A~~~G~~~iv------~lLl~~Ga~v~l--~-----d~~G~tPLdl~s--g~-v~qa~~~~~~~~~----g~VYsWGsN~ 164 (1071)
-++--...+. .-+.-.|-+.|. . .......++|.+ |- ..|+..+.+|++- |+||++|.+.
T Consensus 126 ~~r~~~~~i~~~~d~pndvy~wG~N~N~tLGign~~~~~~Pe~Vdlf~~Sg~~~~qV~l~kfHSvfl~~kgqvY~cGhG~ 205 (1267)
T KOG0783|consen 126 LSRVLSSTIHPVLDLPNDVYGWGTNVNNTLGIGNGKEPSSPERVDLFKTSGQLFSQVQLSKFHSVFLTEKGQVYVCGHGA 205 (1267)
T ss_pred HhhccccccccccCCccceeEecccccccccccCCCCCCChHHhHHHHhccHHHHHHHHhhceeeEecCCCcEEEeccCC
Confidence 8763222111 112222333321 1 111122344443 33 3677777666654 7999999999
Q ss_pred ccccCCCCcccccCCceeccCCCceEEEEecCCceEEEEecCCcEEEEecCCCCCCCCCCCccCCCCcceeeeeeeecCC
Q 001476 165 NYQLGTGNAHLQKLPCKVDSLHGFVIKLISAAKFHSVAVTSLGEVYTWGYGRGGRLGHPDFDIHSGQAAVITPRRVTSGL 244 (1071)
Q Consensus 165 ~GQLG~G~~~~~~~P~~V~~l~~~~I~~Va~G~~HslaLT~dG~Vy~WG~N~~GQLG~g~~~~~s~~~~~~~P~~V~~~l 244 (1071)
.|+||.|+.....+|.+|+.|.+.+|.+|++...|+++||++|-||+||.|.++|||..+....-......+++++. +
T Consensus 206 GGRlG~gdeq~~~iPkrV~gL~gh~~~qisvs~~HslvLT~~g~Vys~GlN~~hqLG~~~~~~~~~~p~qI~a~r~k-g- 283 (1267)
T KOG0783|consen 206 GGRLGFGDEQYNFIPKRVPGLIGHKVIQISVSHTHSLVLTKFGSVYSWGLNGSHQLGLSNDELKKDDPIQITARRIK-G- 283 (1267)
T ss_pred CCccCcCcccccccccccccccccceEEEEeecceeEEEeecceEEEeecCcccccCCcCchhhcCchhhhhhHhhc-c-
Confidence 99999999888999999999999999999999999999999999999999999999998653333333444454444 2
Q ss_pred CCCCEEEEEecCceEEEEEcCCcEEEEeCCCCCCcCCCCC-CCCCcceeeccCcccEEEEEEcCCceeEEecCCcEEEEe
Q 001476 245 GSRRVKTIAAAKHHTVLATEGGEVFTWGSNREGQLGYTSV-DTQPTPRRVSSLKLKIIAVAAANKHTAVVSESGEVFTWG 323 (1071)
Q Consensus 245 ~~~~Iv~IAcG~~HslaLT~dG~VyswG~N~~GQLG~g~~-~~~~~P~~V~~l~~~Iv~VacG~~HSlaLt~dG~VY~WG 323 (1071)
-..|+.|++|..|+++-|+. .||+||.| .||||..+. ....+|+.+......|..|+|...-|++++++|.+|++-
T Consensus 284 -~~~iIgvaAg~~hsVawt~~-~VY~wGlN-~GQlGi~~n~~~Vt~Pr~l~~~~~~v~~v~a~~~ATVc~~~~~~i~~~a 360 (1267)
T KOG0783|consen 284 -FKQIIGVAAGKSHSVAWTDT-DVYSWGLN-NGQLGISDNISVVTTPRRLAGLLSPVIHVVATTRATVCLLQNNSIIAFA 360 (1267)
T ss_pred -hhhhhhhhcccceeeeeecc-eEEEeccc-CceecCCCCCceeecchhhcccccceEEEEecCccEEEEecCCcEEEEe
Confidence 23899999999999999965 69999998 699998754 446788888777788999999999999999999999996
Q ss_pred CCCCCCcCCCCCCCCCcccceeeec--c--CCCCEEEEEecCCeEEEEeeCCcEEEEecCCCCCCCccceeccccCCcEE
Q 001476 324 CNREGQLGYGTSNSASNYTPRVVES--L--KGKDLVGVAAAKYHTIVLGADGERVIVARNLKKSGSTPLKFHRKIKLHVV 399 (1071)
Q Consensus 324 ~N~~GQLG~g~~~~~~~~~P~~V~~--l--~~~~I~~IaaG~~hTlaLt~dG~Vy~wG~n~~~~~~~P~~~~~~~~~~I~ 399 (1071)
.-..-.+-.... ...-..|.. + .-.++.+..+....-+++|+-|.||.|-.+...... ..+..+.-..|.
T Consensus 361 dy~~~k~~~n~~----~lks~~V~gg~l~~~~~~~~k~~a~~~kll~lte~g~Vy~w~s~ns~~~~--c~ftp~r~~~is 434 (1267)
T KOG0783|consen 361 DYNQVKLPFNVD----FLKSLKVTGGPLSLTRFNVRKLLASENKLLVLTELGEVYEWDSKNSTRTS--CKFTPLRIFEIS 434 (1267)
T ss_pred cccceecCcchh----ccceeEEecCccchhhhhhhhcchhhhheeeeccCCeEEEEecCCCceee--eecccceeeehh
Confidence 432222211110 111112211 0 112456777778888999999999999876433222 222222223567
Q ss_pred EEEeCCCcceEEecCCcEE
Q 001476 400 SIAAGMVHSTALTEDGALF 418 (1071)
Q Consensus 400 ~Ia~G~~hslaLt~dG~Vy 418 (1071)
+|+--.+..+++|+||..|
T Consensus 435 dIa~~~N~~~~~t~dGc~~ 453 (1267)
T KOG0783|consen 435 DIAWTANSLILCTRDGCWK 453 (1267)
T ss_pred hhhhccceEEEEecCccee
Confidence 8888888999999999443
No 7
>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=5.5e-19 Score=177.44 Aligned_cols=125 Identities=28% Similarity=0.340 Sum_probs=112.2
Q ss_pred CHHHHHhCCCCccccCCccccCCCCCCchHHHHHHHcCCHHHHHHHHHHHHhC-CCCCcccCCCCCcHHHHHHhcCCHHH
Q 001476 1 MTELLVSHHGQKQTLQSPARKSSLGGVQKDLCLAVREGSLADVESALALLKKN-GGNINSRNIFGLTPLHSAIWRNQVPI 79 (1071)
Q Consensus 1 Ive~LLe~ga~~~~~~~~~~~~~~~~g~TpLh~Aa~~G~~~~v~~iL~lLl~~-Gadin~~d~~G~TpLH~Aa~~g~~ei 79 (1071)
|+.|||+....+.+ + . +..||||||.||..|+.++|+ .|+.+ |+|+|..+..|+|+||||+..|+.+|
T Consensus 53 iv~fLlsq~nv~~d--d--k---DdaGWtPlhia~s~g~~evVk----~Ll~r~~advna~tn~G~T~LHyAagK~r~eI 121 (226)
T KOG4412|consen 53 IVYFLLSQPNVKPD--D--K---DDAGWTPLHIAASNGNDEVVK----ELLNRSGADVNATTNGGQTCLHYAAGKGRLEI 121 (226)
T ss_pred HHHHHHhcCCCCCC--C--c---cccCCchhhhhhhcCcHHHHH----HHhcCCCCCcceecCCCcceehhhhcCChhhH
Confidence 57899984333222 1 1 468999999999999999999 55666 99999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCCCCCCccccccccccccccchhhhhccccccccccCCCCCCccc
Q 001476 80 VRRLLAAGADPDARDGESGWSSLHRALHFGHLAVASVLLQSGASITLEDCKSRTPVDL 137 (1071)
Q Consensus 80 vk~LL~~GAd~~~~d~~~G~TpL~~A~~~G~~~iv~lLl~~Ga~v~l~d~~G~tPLdl 137 (1071)
+++|+++|+.++++| ..|.||||.|+..|.++++++|+..|+.+|..|..|.||+++
T Consensus 122 aqlLle~ga~i~~kD-~~~qtplHRAAavGklkvie~Li~~~a~~n~qDk~G~TpL~~ 178 (226)
T KOG4412|consen 122 AQLLLEKGALIRIKD-KQGQTPLHRAAAVGKLKVIEYLISQGAPLNTQDKYGFTPLHH 178 (226)
T ss_pred HHHHHhcCCCCcccc-cccCchhHHHHhccchhhHHHHHhcCCCCCcccccCccHHHH
Confidence 999999999999999 999999999999999999999999999999999999999976
No 8
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=99.71 E-value=1.1e-16 Score=192.21 Aligned_cols=188 Identities=30% Similarity=0.434 Sum_probs=143.1
Q ss_pred cceeeeccCCcccccCCCCcccccCCceeccCCCceEEEEecCCceEEEEecCCcEEEEecCCCCCCCCCCCccC-----
Q 001476 154 ATEVFSWGSGANYQLGTGNAHLQKLPCKVDSLHGFVIKLISAAKFHSVAVTSLGEVYTWGYGRGGRLGHPDFDIH----- 228 (1071)
Q Consensus 154 ~g~VYsWGsN~~GQLG~G~~~~~~~P~~V~~l~~~~I~~Va~G~~HslaLT~dG~Vy~WG~N~~GQLG~g~~~~~----- 228 (1071)
.|++|.+|..... ....-..+..|++.-|.+++.|..|+++++.+|+||+||.|+.+|+|.-.....
T Consensus 587 nGkifM~G~~tm~--------~n~SSqmln~L~~~~isslAlGKsH~~av~rNG~l~T~GlNN~~QCGRVEs~sTt~s~~ 658 (3738)
T KOG1428|consen 587 NGKIFMGGLHTMR--------VNVSSQMLNGLDNVMISSLALGKSHGVAVTRNGHLFTWGLNNMNQCGRVESTSTTSSPR 658 (3738)
T ss_pred CCeEEeecceeEE--------ecchHHHhhccccceeehhhccccceeEEEeCCeEEEEecCCcccccccccccccCCcc
Confidence 3677776643211 112345677888999999999999999999999999999999999997421000
Q ss_pred -C------------------------------------------------------------------------------
Q 001476 229 -S------------------------------------------------------------------------------ 229 (1071)
Q Consensus 229 -s------------------------------------------------------------------------------ 229 (1071)
+
T Consensus 659 ~s~~~e~~iCP~G~HtW~~dt~~VCa~CG~Cs~~GvaC~~~~RP~G~mC~CG~GES~C~~CG~Cr~C~e~tE~~QPG~aq 738 (3738)
T KOG1428|consen 659 HSGRQEYQICPIGEHTWLTDTPSVCAQCGLCSARGVACGRVPRPKGTMCHCGVGESTCLRCGLCRPCGEVTEPAQPGRAQ 738 (3738)
T ss_pred cccceeecccCCccceeecCCcchhhhcccccccccccccCCCCCCcccccCCCcccceeccccccccCcCCcCCCCHHH
Confidence 0
Q ss_pred ---------CCcceeeeeeeec--CCCCCCEEEEEecCceEEEEEcCCcEEEEeCCCCCCcCCCCCCCCCcceeeccCcc
Q 001476 230 ---------GQAAVITPRRVTS--GLGSRRVKTIAAAKHHTVLATEGGEVFTWGSNREGQLGYTSVDTQPTPRRVSSLKL 298 (1071)
Q Consensus 230 ---------~~~~~~~P~~V~~--~l~~~~Iv~IAcG~~HslaLT~dG~VyswG~N~~GQLG~g~~~~~~~P~~V~~l~~ 298 (1071)
.+.....|.+|.. +....++.+|+||.+|+++|.+|++||+||.|.+||||+|+.....+|++|..+..
T Consensus 739 HvQ~~staa~QR~~~HPs~V~~sq~~Hdvkv~sVSCG~~HtVlL~sd~~VfTFG~~~HGQLG~GDt~Sk~~Pq~V~~~~~ 818 (3738)
T KOG1428|consen 739 HVQFSSTAAPQRSTLHPSRVILSQGPHDVKVSSVSCGNFHTVLLASDRRVFTFGSNCHGQLGVGDTLSKNTPQQVILPSD 818 (3738)
T ss_pred hheecccccccccccCchheeeccCCcceeEEEEeccCceEEEEecCCcEEEecCCcccccCcCccccCCCcceEEcCCC
Confidence 0000111222210 11245799999999999999999999999999999999999999999999987764
Q ss_pred -cEEEEEEcCCceeEEecCCcEEEEeCCCCCCcCCCCCCC-CCcccceeeecc
Q 001476 299 -KIIAVAAANKHTAVVSESGEVFTWGCNREGQLGYGTSNS-ASNYTPRVVESL 349 (1071)
Q Consensus 299 -~Iv~VacG~~HSlaLt~dG~VY~WG~N~~GQLG~g~~~~-~~~~~P~~V~~l 349 (1071)
.|++|++|.+||+++..||.||+||.-..|||++..... .-...|..|..+
T Consensus 819 t~~vQVaAGSNHT~l~~~DGsVFTFGaF~KGQL~RP~~e~~~WNA~Pe~v~~~ 871 (3738)
T KOG1428|consen 819 TVIVQVAAGSNHTILRANDGSVFTFGAFGKGQLARPAGEKAGWNAIPEKVSGF 871 (3738)
T ss_pred CceEEEecCCCceEEEecCCcEEEeccccCccccCccccccccccCCCcCCCC
Confidence 799999999999999999999999999999999865432 224567777655
No 9
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=99.69 E-value=3.7e-16 Score=187.78 Aligned_cols=184 Identities=29% Similarity=0.400 Sum_probs=142.3
Q ss_pred CCceEEEEecCCceEEEEecCCcEEEEecCCCCCCCCCCCccCCCCcce-eeeeeeecCCCCCCEEEEEecCceEEEEEc
Q 001476 186 HGFVIKLISAAKFHSVAVTSLGEVYTWGYGRGGRLGHPDFDIHSGQAAV-ITPRRVTSGLGSRRVKTIAAAKHHTVLATE 264 (1071)
Q Consensus 186 ~~~~I~~Va~G~~HslaLT~dG~Vy~WG~N~~GQLG~g~~~~~s~~~~~-~~P~~V~~~l~~~~Iv~IAcG~~HslaLT~ 264 (1071)
+..+|+.|.+...---.+.+||++|..|...- .+ .....+. ++.+.-|.+++.|..|+++++.
T Consensus 567 n~rKIv~v~~s~~VY~~vSenGkifM~G~~tm---------------~~n~SSqmln-~L~~~~isslAlGKsH~~av~r 630 (3738)
T KOG1428|consen 567 NRRKIVHVCASGHVYGYVSENGKIFMGGLHTM---------------RVNVSSQMLN-GLDNVMISSLALGKSHGVAVTR 630 (3738)
T ss_pred CcceeEEEeeeeEEEEEEccCCeEEeecceeE---------------EecchHHHhh-ccccceeehhhccccceeEEEe
Confidence 34578888765555557899999999984211 00 0111223 6777889999999999999999
Q ss_pred CCcEEEEeCCCCCCcCCCCCC-----------------------------------------------------------
Q 001476 265 GGEVFTWGSNREGQLGYTSVD----------------------------------------------------------- 285 (1071)
Q Consensus 265 dG~VyswG~N~~GQLG~g~~~----------------------------------------------------------- 285 (1071)
+|.||+||-|..+|+|.-...
T Consensus 631 NG~l~T~GlNN~~QCGRVEs~sTt~s~~~s~~~e~~iCP~G~HtW~~dt~~VCa~CG~Cs~~GvaC~~~~RP~G~mC~CG 710 (3738)
T KOG1428|consen 631 NGHLFTWGLNNMNQCGRVESTSTTSSPRHSGRQEYQICPIGEHTWLTDTPSVCAQCGLCSARGVACGRVPRPKGTMCHCG 710 (3738)
T ss_pred CCeEEEEecCCcccccccccccccCCcccccceeecccCCccceeecCCcchhhhcccccccccccccCCCCCCcccccC
Confidence 999999999999998742100
Q ss_pred ---------------------------------CCCccee-------eccC----cccEEEEEEcCCceeEEecCCcEEE
Q 001476 286 ---------------------------------TQPTPRR-------VSSL----KLKIIAVAAANKHTAVVSESGEVFT 321 (1071)
Q Consensus 286 ---------------------------------~~~~P~~-------V~~l----~~~Iv~VacG~~HSlaLt~dG~VY~ 321 (1071)
....|++ |..- ..++.+|+||++|+++|.+|++||+
T Consensus 711 ~GES~C~~CG~Cr~C~e~tE~~QPG~aqHvQ~~staa~QR~~~HPs~V~~sq~~Hdvkv~sVSCG~~HtVlL~sd~~VfT 790 (3738)
T KOG1428|consen 711 VGESTCLRCGLCRPCGEVTEPAQPGRAQHVQFSSTAAPQRSTLHPSRVILSQGPHDVKVSSVSCGNFHTVLLASDRRVFT 790 (3738)
T ss_pred CCcccceeccccccccCcCCcCCCCHHHhheecccccccccccCchheeeccCCcceeEEEEeccCceEEEEecCCcEEE
Confidence 0001111 1100 2468999999999999999999999
Q ss_pred EeCCCCCCcCCCCCCCCCcccceeeeccCCCCEEEEEecCCeEEEEeeCCcEEEEecCCCCCCCcc
Q 001476 322 WGCNREGQLGYGTSNSASNYTPRVVESLKGKDLVGVAAAKYHTIVLGADGERVIVARNLKKSGSTP 387 (1071)
Q Consensus 322 WG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~I~~IaaG~~hTlaLt~dG~Vy~wG~n~~~~~~~P 387 (1071)
||.|.+||||+|+..+ ..+|+.|..+.+..|++|++|.+||+++..||.||.+|.-.+++...|
T Consensus 791 FG~~~HGQLG~GDt~S--k~~Pq~V~~~~~t~~vQVaAGSNHT~l~~~DGsVFTFGaF~KGQL~RP 854 (3738)
T KOG1428|consen 791 FGSNCHGQLGVGDTLS--KNTPQQVILPSDTVIVQVAAGSNHTILRANDGSVFTFGAFGKGQLARP 854 (3738)
T ss_pred ecCCcccccCcCcccc--CCCcceEEcCCCCceEEEecCCCceEEEecCCcEEEeccccCccccCc
Confidence 9999999999999765 568999999999999999999999999999999999998766665543
No 10
>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=2.4e-17 Score=165.74 Aligned_cols=127 Identities=29% Similarity=0.428 Sum_probs=113.3
Q ss_pred CHHHHHhCCCCccccCCccccCCCCCCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHH
Q 001476 1 MTELLVSHHGQKQTLQSPARKSSLGGVQKDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIV 80 (1071)
Q Consensus 1 Ive~LLe~ga~~~~~~~~~~~~~~~~g~TpLh~Aa~~G~~~~v~~iL~lLl~~Gadin~~d~~G~TpLH~Aa~~g~~eiv 80 (1071)
+|+.|+.+.+.+.|.. .+.|.|+|||||-.|.+++++ +|+++|+.|+.+|..|.||||-|+.-|.+++|
T Consensus 87 vVk~Ll~r~~advna~-------tn~G~T~LHyAagK~r~eIaq----lLle~ga~i~~kD~~~qtplHRAAavGklkvi 155 (226)
T KOG4412|consen 87 VVKELLNRSGADVNAT-------TNGGQTCLHYAAGKGRLEIAQ----LLLEKGALIRIKDKQGQTPLHRAAAVGKLKVI 155 (226)
T ss_pred HHHHHhcCCCCCccee-------cCCCcceehhhhcCChhhHHH----HHHhcCCCCcccccccCchhHHHHhccchhhH
Confidence 4788888744433332 456789999999999999999 99999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCCCCCCccccccccccccccchhhhhccccccccccCCCCCCcccCCC
Q 001476 81 RRLLAAGADPDARDGESGWSSLHRALHFGHLAVASVLLQSGASITLEDCKSRTPVDLLSG 140 (1071)
Q Consensus 81 k~LL~~GAd~~~~d~~~G~TpL~~A~~~G~~~iv~lLl~~Ga~v~l~d~~G~tPLdl~sg 140 (1071)
++|+..|+.+|.+| ..|+||||.|...|+.+++.+|+++|++....|++| |++....+
T Consensus 156 e~Li~~~a~~n~qD-k~G~TpL~~al~e~~~d~a~lLV~~gAd~~~edke~-t~~~~a~~ 213 (226)
T KOG4412|consen 156 EYLISQGAPLNTQD-KYGFTPLHHALAEGHPDVAVLLVRAGADTDREDKEG-TALRIACN 213 (226)
T ss_pred HHHHhcCCCCCccc-ccCccHHHHHHhccCchHHHHHHHhccceeeccccC-chHHHHHH
Confidence 99999999999999 899999999988999999999999999999999988 88655443
No 11
>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]
Probab=99.64 E-value=1.8e-16 Score=185.32 Aligned_cols=125 Identities=32% Similarity=0.419 Sum_probs=95.1
Q ss_pred CHHHHHhCCCCccccCCccccCCCCCCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHH
Q 001476 1 MTELLVSHHGQKQTLQSPARKSSLGGVQKDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIV 80 (1071)
Q Consensus 1 Ive~LLe~ga~~~~~~~~~~~~~~~~g~TpLh~Aa~~G~~~~v~~iL~lLl~~Gadin~~d~~G~TpLH~Aa~~g~~eiv 80 (1071)
|++|||++||+++..... -+.||||+||++|++.+|. +|+++|||++.+|..|.||||+||..++..+|
T Consensus 93 v~r~li~~gadvn~~gG~-------l~stPLHWAar~G~~~vv~----lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~v 161 (600)
T KOG0509|consen 93 VARYLISHGADVNAIGGV-------LGSTPLHWAARNGHISVVD----LLLQHGADPTLKDKQGLTPLHLAAQFGHTALV 161 (600)
T ss_pred HHHHHHHcCCCccccCCC-------CCCCcchHHHHcCcHHHHH----HHHHcCCCCceecCCCCcHHHHHHHhCchHHH
Confidence 467788887777765432 2346788888888887777 77778888888888888888888888888888
Q ss_pred HHHHhcCCCCCCCCCCCCccccccccccccccchhhhhcccccccccc-CCCCCCccc
Q 001476 81 RRLLAAGADPDARDGESGWSSLHRALHFGHLAVASVLLQSGASITLED-CKSRTPVDL 137 (1071)
Q Consensus 81 k~LL~~GAd~~~~d~~~G~TpL~~A~~~G~~~iv~lLl~~Ga~v~l~d-~~G~tPLdl 137 (1071)
-+||..|+++|.+| .+|+||||+|++.|+...+.+|+..|+++...| .+|.||+++
T Consensus 162 ayll~~~~d~d~~D-~~grTpLmwAaykg~~~~v~~LL~f~a~~~~~d~~~g~TpLHw 218 (600)
T KOG0509|consen 162 AYLLSKGADIDLRD-NNGRTPLMWAAYKGFALFVRRLLKFGASLLLTDDNHGNTPLHW 218 (600)
T ss_pred HHHHHhcccCCCcC-CCCCCHHHHHHHhcccHHHHHHHHhcccccccccccCCchHHH
Confidence 88888888888888 778888888888777776777777787777777 678887765
No 12
>PHA02859 ankyrin repeat protein; Provisional
Probab=99.62 E-value=7.6e-16 Score=164.85 Aligned_cols=127 Identities=14% Similarity=0.135 Sum_probs=89.3
Q ss_pred CHHHHHhCCCCccccCCccccCCCCCCchHHHHHHHc---CCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHh--cC
Q 001476 1 MTELLVSHHGQKQTLQSPARKSSLGGVQKDLCLAVRE---GSLADVESALALLKKNGGNINSRNIFGLTPLHSAIW--RN 75 (1071)
Q Consensus 1 Ive~LLe~ga~~~~~~~~~~~~~~~~g~TpLh~Aa~~---G~~~~v~~iL~lLl~~Gadin~~d~~G~TpLH~Aa~--~g 75 (1071)
|+++||++|++.+... ...|.||||+|+.. ++.++++ +|+++|+++|.+|..|.||||+|+. .+
T Consensus 68 iv~~Ll~~gadvn~~~-------~~~g~TpLh~a~~~~~~~~~eiv~----~Ll~~gadin~~d~~G~TpLh~a~~~~~~ 136 (209)
T PHA02859 68 ILKFLIENGADVNFKT-------RDNNLSALHHYLSFNKNVEPEILK----ILIDSGSSITEEDEDGKNLLHMYMCNFNV 136 (209)
T ss_pred HHHHHHHCCCCCCccC-------CCCCCCHHHHHHHhCccccHHHHH----HHHHCCCCCCCcCCCCCCHHHHHHHhccC
Confidence 4677777776654321 12456778877653 3455555 7777788888888788888887765 35
Q ss_pred CHHHHHHHHhcCCCCCCCCCCCCcccccc-ccccccccchhhhhccccccccccCCCCCCcccCC
Q 001476 76 QVPIVRRLLAAGADPDARDGESGWSSLHR-ALHFGHLAVASVLLQSGASITLEDCKSRTPVDLLS 139 (1071)
Q Consensus 76 ~~eivk~LL~~GAd~~~~d~~~G~TpL~~-A~~~G~~~iv~lLl~~Ga~v~l~d~~G~tPLdl~s 139 (1071)
+.+++++|+++|++++.+| ..|.||||. |+..++.+++++|+++|++++.++..|.+|++++.
T Consensus 137 ~~~iv~~Li~~gadin~~d-~~g~t~Lh~~a~~~~~~~iv~~Ll~~Gadi~~~d~~g~tpl~la~ 200 (209)
T PHA02859 137 RINVIKLLIDSGVSFLNKD-FDNNNILYSYILFHSDKKIFDFLTSLGIDINETNKSGYNCYDLIK 200 (209)
T ss_pred CHHHHHHHHHcCCCccccc-CCCCcHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHh
Confidence 7778888888888887777 677888875 45566777778888888877777777888777654
No 13
>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]
Probab=99.61 E-value=4.3e-16 Score=182.13 Aligned_cols=142 Identities=30% Similarity=0.438 Sum_probs=120.8
Q ss_pred HHHHHhC-CCCccccCCccccCCCCCCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccC-CCCCcHHHHHHhcCCHHH
Q 001476 2 TELLVSH-HGQKQTLQSPARKSSLGGVQKDLCLAVREGSLADVESALALLKKNGGNINSRN-IFGLTPLHSAIWRNQVPI 79 (1071)
Q Consensus 2 ve~LLe~-ga~~~~~~~~~~~~~~~~g~TpLh~Aa~~G~~~~v~~iL~lLl~~Gadin~~d-~~G~TpLH~Aa~~g~~ei 79 (1071)
++.|++. |.++++. +.+|.|+||+||.++++++++ +|+++|+|+|... ..+.|||||||++|++.+
T Consensus 60 v~~lve~~g~~v~~~--------D~~g~tlLHWAAiNNrl~v~r----~li~~gadvn~~gG~l~stPLHWAar~G~~~v 127 (600)
T KOG0509|consen 60 VKELVESEGESVNNP--------DREGVTLLHWAAINNRLDVAR----YLISHGADVNAIGGVLGSTPLHWAARNGHISV 127 (600)
T ss_pred HHHHHhhcCcCCCCC--------CcCCccceeHHHHcCcHHHHH----HHHHcCCCccccCCCCCCCcchHHHHcCcHHH
Confidence 5678886 4443332 347789999999999999999 9999999999999 779999999999999999
Q ss_pred HHHHHhcCCCCCCCCCCCCccccccccccccccchhhhhccccccccccCCCCCCcccCCCCceeeeccccccccceeee
Q 001476 80 VRRLLAAGADPDARDGESGWSSLHRALHFGHLAVASVLLQSGASITLEDCKSRTPVDLLSGPVLQVVGSGYNSVATEVFS 159 (1071)
Q Consensus 80 vk~LL~~GAd~~~~d~~~G~TpL~~A~~~G~~~iv~lLl~~Ga~v~l~d~~G~tPLdl~sg~v~qa~~~~~~~~~g~VYs 159 (1071)
|.+||++||||+.+| .+|.||||+|++.++..++.+|+.++++++.+|++|+||+..+.= -++......+.-
T Consensus 128 v~lLlqhGAdpt~~D-~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAay-------kg~~~~v~~LL~ 199 (600)
T KOG0509|consen 128 VDLLLQHGADPTLKD-KQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAAY-------KGFALFVRRLLK 199 (600)
T ss_pred HHHHHHcCCCCceec-CCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHHH-------hcccHHHHHHHH
Confidence 999999999999999 899999999999999999999999999999999999999987432 222222345666
Q ss_pred ccCC
Q 001476 160 WGSG 163 (1071)
Q Consensus 160 WGsN 163 (1071)
||..
T Consensus 200 f~a~ 203 (600)
T KOG0509|consen 200 FGAS 203 (600)
T ss_pred hccc
Confidence 6654
No 14
>PHA02743 Viral ankyrin protein; Provisional
Probab=99.58 E-value=3e-15 Score=154.53 Aligned_cols=104 Identities=19% Similarity=0.127 Sum_probs=69.3
Q ss_pred CCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccC-CCCCcHHHHHHhcCCHHHHHHHHh-cCCCCCCCCCCCCccccc
Q 001476 26 GVQKDLCLAVREGSLADVESALALLKKNGGNINSRN-IFGLTPLHSAIWRNQVPIVRRLLA-AGADPDARDGESGWSSLH 103 (1071)
Q Consensus 26 ~g~TpLh~Aa~~G~~~~v~~iL~lLl~~Gadin~~d-~~G~TpLH~Aa~~g~~eivk~LL~-~GAd~~~~d~~~G~TpL~ 103 (1071)
.|.||||+||..|+.+.+. ++++|+.+|+++|.+| ..|.||||+|+..++.+++++|+. .|++++.+| ..|+||||
T Consensus 56 ~g~t~Lh~Aa~~g~~~~~~-~i~~Ll~~Gadin~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d-~~g~tpL~ 133 (166)
T PHA02743 56 HGRQCTHMVAWYDRANAVM-KIELLVNMGADINARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAIN-YQHETAYH 133 (166)
T ss_pred CCCcHHHHHHHhCccCHHH-HHHHHHHcCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcC-CCCCCHHH
Confidence 4566777777766654432 2336667777777766 367777777777777777777774 577777766 66777777
Q ss_pred cccccccccchhhhhccccccccccCCC
Q 001476 104 RALHFGHLAVASVLLQSGASITLEDCKS 131 (1071)
Q Consensus 104 ~A~~~G~~~iv~lLl~~Ga~v~l~d~~G 131 (1071)
+|+..++.+++++|+.+|++++..+..|
T Consensus 134 ~A~~~~~~~iv~~Ll~~ga~~~~~~~~~ 161 (166)
T PHA02743 134 IAYKMRDRRMMEILRANGAVCDDPLSIG 161 (166)
T ss_pred HHHHcCCHHHHHHHHHcCCCCCCcccCC
Confidence 7777777777777777777766665544
No 15
>PHA02791 ankyrin-like protein; Provisional
Probab=99.57 E-value=3.4e-15 Score=166.78 Aligned_cols=120 Identities=21% Similarity=0.205 Sum_probs=103.3
Q ss_pred CHHHHHhCCCCccccCCccccCCCCCCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHH
Q 001476 1 MTELLVSHHGQKQTLQSPARKSSLGGVQKDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIV 80 (1071)
Q Consensus 1 Ive~LLe~ga~~~~~~~~~~~~~~~~g~TpLh~Aa~~G~~~~v~~iL~lLl~~Gadin~~d~~G~TpLH~Aa~~g~~eiv 80 (1071)
+++||+++++.. .+..|.||||+|+..|+.++++ +|+++|+++|.++ |.||||+|+..|+.+++
T Consensus 14 ~~~~Lis~~a~~----------~D~~G~TpLh~Aa~~g~~eiv~----~Ll~~ga~~n~~d--~~TpLh~Aa~~g~~eiV 77 (284)
T PHA02791 14 LKSFLSSKDAFK----------ADVHGHSALYYAIADNNVRLVC----TLLNAGALKNLLE--NEFPLHQAATLEDTKIV 77 (284)
T ss_pred HHHHHHhCCCCC----------CCCCCCcHHHHHHHcCCHHHHH----HHHHCcCCCcCCC--CCCHHHHHHHCCCHHHH
Confidence 468899876641 1456789999999999998888 8888999988765 68999999999999999
Q ss_pred HHHHhcCCCCCCCCCCCCccccccccccccccchhhhhccccccccccCCCC-CCccc
Q 001476 81 RRLLAAGADPDARDGESGWSSLHRALHFGHLAVASVLLQSGASITLEDCKSR-TPVDL 137 (1071)
Q Consensus 81 k~LL~~GAd~~~~d~~~G~TpL~~A~~~G~~~iv~lLl~~Ga~v~l~d~~G~-tPLdl 137 (1071)
++|+.+|++++.+| ..|+||||+|+..|+.+++++|+++|++++..+..|. +|+++
T Consensus 78 ~lLL~~Gadvn~~d-~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~ 134 (284)
T PHA02791 78 KILLFSGMDDSQFD-DKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYH 134 (284)
T ss_pred HHHHHCCCCCCCCC-CCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHH
Confidence 99999999999999 7899999999999999999999999999988888774 67754
No 16
>PHA02791 ankyrin-like protein; Provisional
Probab=99.57 E-value=4e-15 Score=166.22 Aligned_cols=105 Identities=18% Similarity=0.133 Sum_probs=62.1
Q ss_pred HHHHHhCCCCccccCCccccCCCCCCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHH
Q 001476 2 TELLVSHHGQKQTLQSPARKSSLGGVQKDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVR 81 (1071)
Q Consensus 2 ve~LLe~ga~~~~~~~~~~~~~~~~g~TpLh~Aa~~G~~~~v~~iL~lLl~~Gadin~~d~~G~TpLH~Aa~~g~~eivk 81 (1071)
+++|+++|++.... ++.||||+|+..|+.++++ +|+.+|+++|.+|..|+||||+||..|+.++++
T Consensus 46 v~~Ll~~ga~~n~~----------d~~TpLh~Aa~~g~~eiV~----lLL~~Gadvn~~d~~G~TpLh~Aa~~g~~eivk 111 (284)
T PHA02791 46 VCTLLNAGALKNLL----------ENEFPLHQAATLEDTKIVK----ILLFSGMDDSQFDDKGNTALYYAVDSGNMQTVK 111 (284)
T ss_pred HHHHHHCcCCCcCC----------CCCCHHHHHHHCCCHHHHH----HHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHH
Confidence 56666666543311 2346666666666666666 555666666666666666666666666666666
Q ss_pred HHHhcCCCCCCCCCCCCc-cccccccccccccchhhhhccc
Q 001476 82 RLLAAGADPDARDGESGW-SSLHRALHFGHLAVASVLLQSG 121 (1071)
Q Consensus 82 ~LL~~GAd~~~~d~~~G~-TpL~~A~~~G~~~iv~lLl~~G 121 (1071)
+|+++|++++.++ ..|+ ||||+|+..|+.+++++|++++
T Consensus 112 ~Ll~~gadin~~~-~~g~~TpL~~Aa~~g~~eivk~LL~~~ 151 (284)
T PHA02791 112 LFVKKNWRLMFYG-KTGWKTSFYHAVMLNDVSIVSYFLSEI 151 (284)
T ss_pred HHHHCCCCcCccC-CCCCcHHHHHHHHcCCHHHHHHHHhcC
Confidence 6666666666555 3343 4555555555555555555543
No 17
>PHA02878 ankyrin repeat protein; Provisional
Probab=99.56 E-value=4.3e-15 Score=177.84 Aligned_cols=127 Identities=27% Similarity=0.343 Sum_probs=113.3
Q ss_pred CHHHHHhCCCCccccCCccccCCCCCCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHH
Q 001476 1 MTELLVSHHGQKQTLQSPARKSSLGGVQKDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIV 80 (1071)
Q Consensus 1 Ive~LLe~ga~~~~~~~~~~~~~~~~g~TpLh~Aa~~G~~~~v~~iL~lLl~~Gadin~~d~~G~TpLH~Aa~~g~~eiv 80 (1071)
|+++|+++|++...... ..|.||||+||..|+.++++ +|+++|+++|.+|..|.||||+|+..++.+++
T Consensus 149 iv~~Ll~~gadin~~~~-------~~g~tpLh~A~~~~~~~iv~----~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv 217 (477)
T PHA02878 149 ITKLLLSYGADINMKDR-------HKGNTALHYATENKDQRLTE----LLLSYGANVNIPDKTNNSPLHHAVKHYNKPIV 217 (477)
T ss_pred HHHHHHHcCCCCCccCC-------CCCCCHHHHHHhCCCHHHHH----HHHHCCCCCCCcCCCCCCHHHHHHHhCCHHHH
Confidence 47889998887553321 23789999999999999999 88899999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCCCCCCcccccccccc-ccccchhhhhccccccccccC-CCCCCcccCC
Q 001476 81 RRLLAAGADPDARDGESGWSSLHRALHF-GHLAVASVLLQSGASITLEDC-KSRTPVDLLS 139 (1071)
Q Consensus 81 k~LL~~GAd~~~~d~~~G~TpL~~A~~~-G~~~iv~lLl~~Ga~v~l~d~-~G~tPLdl~s 139 (1071)
++|+++|++++.+| ..|+||||+|+.. ++.+++++|+++|++++..+. .|.||++++.
T Consensus 218 ~~Ll~~ga~in~~d-~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~~~g~TpLh~A~ 277 (477)
T PHA02878 218 HILLENGASTDARD-KCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSSI 277 (477)
T ss_pred HHHHHcCCCCCCCC-CCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCHHHHHc
Confidence 99999999999999 8899999999975 689999999999999998886 7999998873
No 18
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.56 E-value=1.6e-15 Score=170.40 Aligned_cols=125 Identities=28% Similarity=0.366 Sum_probs=99.1
Q ss_pred CHHHHHhCCCCccccCCccccCCCCCCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHH
Q 001476 1 MTELLVSHHGQKQTLQSPARKSSLGGVQKDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIV 80 (1071)
Q Consensus 1 Ive~LLe~ga~~~~~~~~~~~~~~~~g~TpLh~Aa~~G~~~~v~~iL~lLl~~Gadin~~d~~G~TpLH~Aa~~g~~eiv 80 (1071)
||+.|+++|++++.... -..|||..||..|++++++ +|+++|+|++..|..|.|.||+||..||.+|+
T Consensus 99 vVk~L~~~ga~VN~tT~--------TNStPLraACfDG~leivK----yLvE~gad~~IanrhGhTcLmIa~ykGh~~I~ 166 (615)
T KOG0508|consen 99 VVKLLLRRGASVNDTTR--------TNSTPLRAACFDGHLEIVK----YLVEHGADPEIANRHGHTCLMIACYKGHVDIA 166 (615)
T ss_pred HHHHHHHhcCccccccc--------cCCccHHHHHhcchhHHHH----HHHHcCCCCcccccCCCeeEEeeeccCchHHH
Confidence 57888888877664322 1237888888888888888 77788888888888888888888888888888
Q ss_pred HHHHhcCCCCCCCCCCCCccccccccccccccchhhhhccccccccccCCCCCCcccCC
Q 001476 81 RRLLAAGADPDARDGESGWSSLHRALHFGHLAVASVLLQSGASITLEDCKSRTPVDLLS 139 (1071)
Q Consensus 81 k~LL~~GAd~~~~d~~~G~TpL~~A~~~G~~~iv~lLl~~Ga~v~l~d~~G~tPLdl~s 139 (1071)
++|++.|||+|.++ ..|.|+||.|+..|+.+++++|+.+|+-++ .|..|.||+.+++
T Consensus 167 qyLle~gADvn~ks-~kGNTALH~caEsG~vdivq~Ll~~ga~i~-~d~~GmtPL~~Aa 223 (615)
T KOG0508|consen 167 QYLLEQGADVNAKS-YKGNTALHDCAESGSVDIVQLLLKHGAKID-VDGHGMTPLLLAA 223 (615)
T ss_pred HHHHHhCCCcchhc-ccCchHHHhhhhcccHHHHHHHHhCCceee-ecCCCCchHHHHh
Confidence 88888888888888 778888888888888888888888888765 4445888876644
No 19
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.55 E-value=4.2e-15 Score=167.17 Aligned_cols=150 Identities=26% Similarity=0.363 Sum_probs=126.4
Q ss_pred CHHHHHhCCCCccccCCcccc-CCCCCCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHH
Q 001476 1 MTELLVSHHGQKQTLQSPARK-SSLGGVQKDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPI 79 (1071)
Q Consensus 1 Ive~LLe~ga~~~~~~~~~~~-~~~~~g~TpLh~Aa~~G~~~~v~~iL~lLl~~Gadin~~d~~G~TpLH~Aa~~g~~ei 79 (1071)
||||||++.+........... ....+|.+||+.|+..||+++|+ +|+.+|+++|.......|||-.||.-|++++
T Consensus 57 vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk----~L~~~ga~VN~tT~TNStPLraACfDG~lei 132 (615)
T KOG0508|consen 57 VVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVK----LLLRRGASVNDTTRTNSTPLRAACFDGHLEI 132 (615)
T ss_pred HHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHH----HHHHhcCccccccccCCccHHHHHhcchhHH
Confidence 589999976655555443322 12347899999999999999999 8889999999998888999999999999999
Q ss_pred HHHHHhcCCCCCCCCCCCCccccccccccccccchhhhhccccccccccCCCCCCcccCCCCceeeeccccccccceeee
Q 001476 80 VRRLLAAGADPDARDGESGWSSLHRALHFGHLAVASVLLQSGASITLEDCKSRTPVDLLSGPVLQVVGSGYNSVATEVFS 159 (1071)
Q Consensus 80 vk~LL~~GAd~~~~d~~~G~TpL~~A~~~G~~~iv~lLl~~Ga~v~l~d~~G~tPLdl~sg~v~qa~~~~~~~~~g~VYs 159 (1071)
|++|+++|+|+++.| ..|.|.||+|++.||.+|+++|++.|++++.++..|.|+++.+. .+++-.+...+..
T Consensus 133 vKyLvE~gad~~Ian-rhGhTcLmIa~ykGh~~I~qyLle~gADvn~ks~kGNTALH~ca-------EsG~vdivq~Ll~ 204 (615)
T KOG0508|consen 133 VKYLVEHGADPEIAN-RHGHTCLMIACYKGHVDIAQYLLEQGADVNAKSYKGNTALHDCA-------ESGSVDIVQLLLK 204 (615)
T ss_pred HHHHHHcCCCCcccc-cCCCeeEEeeeccCchHHHHHHHHhCCCcchhcccCchHHHhhh-------hcccHHHHHHHHh
Confidence 999999999999999 89999999999999999999999999999999999999998743 2334444444555
Q ss_pred ccC
Q 001476 160 WGS 162 (1071)
Q Consensus 160 WGs 162 (1071)
||.
T Consensus 205 ~ga 207 (615)
T KOG0508|consen 205 HGA 207 (615)
T ss_pred CCc
Confidence 653
No 20
>PHA02741 hypothetical protein; Provisional
Probab=99.54 E-value=7.3e-15 Score=151.91 Aligned_cols=116 Identities=20% Similarity=0.249 Sum_probs=102.4
Q ss_pred CCCCchHHHHHHHcCCHHHHHHHHHHH--HhCCCCCcccCCCCCcHHHHHHhcCC----HHHHHHHHhcCCCCCCCCCCC
Q 001476 24 LGGVQKDLCLAVREGSLADVESALALL--KKNGGNINSRNIFGLTPLHSAIWRNQ----VPIVRRLLAAGADPDARDGES 97 (1071)
Q Consensus 24 ~~~g~TpLh~Aa~~G~~~~v~~iL~lL--l~~Gadin~~d~~G~TpLH~Aa~~g~----~eivk~LL~~GAd~~~~d~~~ 97 (1071)
+..|.|+||+||..|+.++++.++.++ ...|+++|.+|..|.||||+|+..|+ .+++++|+.+|++++.++...
T Consensus 18 ~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~~~~ 97 (169)
T PHA02741 18 NSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQEMLE 97 (169)
T ss_pred ccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCcCC
Confidence 356889999999999999999555432 14579999999999999999999999 589999999999999998338
Q ss_pred Cccccccccccccccchhhhhc-cccccccccCCCCCCcccCC
Q 001476 98 GWSSLHRALHFGHLAVASVLLQ-SGASITLEDCKSRTPVDLLS 139 (1071)
Q Consensus 98 G~TpL~~A~~~G~~~iv~lLl~-~Ga~v~l~d~~G~tPLdl~s 139 (1071)
|+||||+|+..++.+++++|+. .|++++..+..|.+|++++.
T Consensus 98 g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~ 140 (169)
T PHA02741 98 GDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAI 140 (169)
T ss_pred CCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHH
Confidence 9999999999999999999997 59999999999999998744
No 21
>PHA02878 ankyrin repeat protein; Provisional
Probab=99.53 E-value=1.3e-14 Score=173.84 Aligned_cols=125 Identities=27% Similarity=0.310 Sum_probs=111.8
Q ss_pred CHHHHHhCCCCccccCCccccCCCCCCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhc-CCHHH
Q 001476 1 MTELLVSHHGQKQTLQSPARKSSLGGVQKDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWR-NQVPI 79 (1071)
Q Consensus 1 Ive~LLe~ga~~~~~~~~~~~~~~~~g~TpLh~Aa~~G~~~~v~~iL~lLl~~Gadin~~d~~G~TpLH~Aa~~-g~~ei 79 (1071)
++++||++|++.... +..|.||||+|+..|+.++++ +|+++|+++|.+|..|.||||+|+.. ++.++
T Consensus 183 iv~~Ll~~gad~n~~--------d~~g~tpLh~A~~~~~~~iv~----~Ll~~ga~in~~d~~g~TpLh~A~~~~~~~~i 250 (477)
T PHA02878 183 LTELLLSYGANVNIP--------DKTNNSPLHHAVKHYNKPIVH----ILLENGASTDARDKCGNTPLHISVGYCKDYDI 250 (477)
T ss_pred HHHHHHHCCCCCCCc--------CCCCCCHHHHHHHhCCHHHHH----HHHHcCCCCCCCCCCCCCHHHHHHHhcCCHHH
Confidence 578999988875432 346789999999999999988 88899999999999999999999976 79999
Q ss_pred HHHHHhcCCCCCCCCCCCCccccccccccccccchhhhhccccccccccCCCCCCcccCC
Q 001476 80 VRRLLAAGADPDARDGESGWSSLHRALHFGHLAVASVLLQSGASITLEDCKSRTPVDLLS 139 (1071)
Q Consensus 80 vk~LL~~GAd~~~~d~~~G~TpL~~A~~~G~~~iv~lLl~~Ga~v~l~d~~G~tPLdl~s 139 (1071)
+++|+++|++++.++...|+||||+| .++.+++++|+++|++++..+..|.||++++.
T Consensus 251 v~~Ll~~gadvn~~~~~~g~TpLh~A--~~~~~~v~~Ll~~gadin~~d~~g~TpL~~A~ 308 (477)
T PHA02878 251 LKLLLEHGVDVNAKSYILGLTALHSS--IKSERKLKLLLEYGADINSLNSYKLTPLSSAV 308 (477)
T ss_pred HHHHHHcCCCCCccCCCCCCCHHHHH--ccCHHHHHHHHHCCCCCCCcCCCCCCHHHHHH
Confidence 99999999999999855799999999 46788999999999999999999999998763
No 22
>PHA02874 ankyrin repeat protein; Provisional
Probab=99.52 E-value=1.6e-14 Score=170.88 Aligned_cols=111 Identities=28% Similarity=0.413 Sum_probs=105.4
Q ss_pred CCCCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCccccc
Q 001476 24 LGGVQKDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLH 103 (1071)
Q Consensus 24 ~~~g~TpLh~Aa~~G~~~~v~~iL~lLl~~Gadin~~d~~G~TpLH~Aa~~g~~eivk~LL~~GAd~~~~d~~~G~TpL~ 103 (1071)
+..|.||||+|+..|+.++++ +|+++|+++|.+|..|.||||+|+..++.+++++|+++|++++..| ..|+||||
T Consensus 121 ~~~g~T~Lh~A~~~~~~~~v~----~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~-~~g~tpL~ 195 (434)
T PHA02874 121 DAELKTFLHYAIKKGDLESIK----MLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKD-NNGESPLH 195 (434)
T ss_pred CCCCccHHHHHHHCCCHHHHH----HHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCC-CCCCCHHH
Confidence 457889999999999999999 8889999999999999999999999999999999999999999999 88999999
Q ss_pred cccccccccchhhhhccccccccccCCCCCCcccCC
Q 001476 104 RALHFGHLAVASVLLQSGASITLEDCKSRTPVDLLS 139 (1071)
Q Consensus 104 ~A~~~G~~~iv~lLl~~Ga~v~l~d~~G~tPLdl~s 139 (1071)
+|+..|+.+++++|+++|++++..+..|.||++++.
T Consensus 196 ~A~~~g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~ 231 (434)
T PHA02874 196 NAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAI 231 (434)
T ss_pred HHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHH
Confidence 999999999999999999999999999999997753
No 23
>PHA02875 ankyrin repeat protein; Provisional
Probab=99.52 E-value=2.2e-14 Score=168.33 Aligned_cols=102 Identities=26% Similarity=0.274 Sum_probs=68.1
Q ss_pred CCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCccccccc
Q 001476 26 GVQKDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRA 105 (1071)
Q Consensus 26 ~g~TpLh~Aa~~G~~~~v~~iL~lLl~~Gadin~~d~~G~TpLH~Aa~~g~~eivk~LL~~GAd~~~~d~~~G~TpL~~A 105 (1071)
.|.||||+|+..|+.++++ +|+++|+++|.++..|.||||+|+..|+.+++++|+++|++++.+| ..|+||||+|
T Consensus 101 ~g~tpL~~A~~~~~~~iv~----~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d-~~g~TpL~~A 175 (413)
T PHA02875 101 DGMTPLHLATILKKLDIMK----LLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIED-CCGCTPLIIA 175 (413)
T ss_pred CCCCHHHHHHHhCCHHHHH----HHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCC-CCCCCHHHHH
Confidence 4566666666666666666 6666666666666666666666666666666666666666666666 5666666666
Q ss_pred cccccccchhhhhccccccccccCCCC
Q 001476 106 LHFGHLAVASVLLQSGASITLEDCKSR 132 (1071)
Q Consensus 106 ~~~G~~~iv~lLl~~Ga~v~l~d~~G~ 132 (1071)
+..|+.+++++|+++|++++..+..|.
T Consensus 176 ~~~g~~eiv~~Ll~~ga~~n~~~~~~~ 202 (413)
T PHA02875 176 MAKGDIAICKMLLDSGANIDYFGKNGC 202 (413)
T ss_pred HHcCCHHHHHHHHhCCCCCCcCCCCCC
Confidence 666666666666666666666665553
No 24
>PHA03095 ankyrin-like protein; Provisional
Probab=99.51 E-value=1.9e-14 Score=171.36 Aligned_cols=124 Identities=26% Similarity=0.332 Sum_probs=111.5
Q ss_pred CHHHHHhCCCCccccCCccccCCCCCCchHHHHHHHcC---CHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcC-C
Q 001476 1 MTELLVSHHGQKQTLQSPARKSSLGGVQKDLCLAVREG---SLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRN-Q 76 (1071)
Q Consensus 1 Ive~LLe~ga~~~~~~~~~~~~~~~~g~TpLh~Aa~~G---~~~~v~~iL~lLl~~Gadin~~d~~G~TpLH~Aa~~g-~ 76 (1071)
+|++||++|++.+.. ...|.||||+|+..+ +.++++ +|+++|+|+|.++..|.||||+|+..+ +
T Consensus 29 ~v~~Ll~~ga~vn~~--------~~~g~t~Lh~a~~~~~~~~~~iv~----~Ll~~Gadin~~~~~g~TpLh~A~~~~~~ 96 (471)
T PHA03095 29 EVRRLLAAGADVNFR--------GEYGKTPLHLYLHYSSEKVKDIVR----LLLEAGADVNAPERCGFTPLHLYLYNATT 96 (471)
T ss_pred HHHHHHHcCCCcccC--------CCCCCCHHHHHHHhcCCChHHHHH----HHHHCCCCCCCCCCCCCCHHHHHHHcCCc
Confidence 478999988875422 235789999999998 777777 899999999999999999999999999 5
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCcccccccc--ccccccchhhhhccccccccccCCCCCCccc
Q 001476 77 VPIVRRLLAAGADPDARDGESGWSSLHRAL--HFGHLAVASVLLQSGASITLEDCKSRTPVDL 137 (1071)
Q Consensus 77 ~eivk~LL~~GAd~~~~d~~~G~TpL~~A~--~~G~~~iv~lLl~~Ga~v~l~d~~G~tPLdl 137 (1071)
.+++++|+++|++++.+| ..|+||||+|+ ..++.+++++|+++|++++..+..|.+|+++
T Consensus 97 ~~iv~lLl~~ga~in~~~-~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~ 158 (471)
T PHA03095 97 LDVIKLLIKAGADVNAKD-KVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAV 158 (471)
T ss_pred HHHHHHHHHcCCCCCCCC-CCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHH
Confidence 999999999999999999 88999999999 5678899999999999999999999999975
No 25
>PHA02946 ankyin-like protein; Provisional
Probab=99.51 E-value=2.6e-14 Score=169.70 Aligned_cols=123 Identities=18% Similarity=0.110 Sum_probs=105.1
Q ss_pred CHHHHHhCCCCccccCCccccCCCCCCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcC--CHH
Q 001476 1 MTELLVSHHGQKQTLQSPARKSSLGGVQKDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRN--QVP 78 (1071)
Q Consensus 1 Ive~LLe~ga~~~~~~~~~~~~~~~~g~TpLh~Aa~~G~~~~v~~iL~lLl~~Gadin~~d~~G~TpLH~Aa~~g--~~e 78 (1071)
++++||++|++++.. +..|.||||+||..|+.++++ +|+++|+|+|.+|..|+||||+|+..+ ..+
T Consensus 54 iv~~Ll~~Gadvn~~--------d~~G~TpLh~Aa~~g~~eiv~----lLL~~GAdin~~d~~g~TpLh~A~~~~~~~~e 121 (446)
T PHA02946 54 FVEELLHRGYSPNET--------DDDGNYPLHIASKINNNRIVA----MLLTHGADPNACDKQHKTPLYYLSGTDDEVIE 121 (446)
T ss_pred HHHHHHHCcCCCCcc--------CCCCCCHHHHHHHcCCHHHHH----HHHHCcCCCCCCCCCCCCHHHHHHHcCCchHH
Confidence 478899988775432 356789999999999998888 888999999999999999999998766 478
Q ss_pred HHHHHHhcCCCCCC-CCCCCCccccccccccccccchhhhhccccccccccCCCCCCccc
Q 001476 79 IVRRLLAAGADPDA-RDGESGWSSLHRALHFGHLAVASVLLQSGASITLEDCKSRTPVDL 137 (1071)
Q Consensus 79 ivk~LL~~GAd~~~-~d~~~G~TpL~~A~~~G~~~iv~lLl~~Ga~v~l~d~~G~tPLdl 137 (1071)
++++|+++|++++. .| ..|.|||| |+..++.+++++|+++|++++..|..|++|+++
T Consensus 122 ~v~lLl~~Gadin~~~d-~~g~tpL~-aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~ 179 (446)
T PHA02946 122 RINLLVQYGAKINNSVD-EEGCGPLL-ACTDPSERVFKKIMSIGFEARIVDKFGKNHIHR 179 (446)
T ss_pred HHHHHHHcCCCcccccC-CCCCcHHH-HHHCCChHHHHHHHhccccccccCCCCCCHHHH
Confidence 99999999999996 45 78999997 666788999999999999999999999999865
No 26
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=99.50 E-value=2.9e-14 Score=130.91 Aligned_cols=89 Identities=35% Similarity=0.570 Sum_probs=82.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCcccccccccccc
Q 001476 31 LCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRALHFGH 110 (1071)
Q Consensus 31 Lh~Aa~~G~~~~v~~iL~lLl~~Gadin~~d~~G~TpLH~Aa~~g~~eivk~LL~~GAd~~~~d~~~G~TpL~~A~~~G~ 110 (1071)
||+||+.|+.++++ +|++.+.+++. |.||||+||..|+.+++++|+++|++++.+| ..|+||||+|+.+|+
T Consensus 1 L~~A~~~~~~~~~~----~ll~~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~ 71 (89)
T PF12796_consen 1 LHIAAQNGNLEILK----FLLEKGADINL----GNTALHYAAENGNLEIVKLLLENGADINSQD-KNGNTALHYAAENGN 71 (89)
T ss_dssp HHHHHHTTTHHHHH----HHHHTTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BS-TTSSBHHHHHHHTTH
T ss_pred CHHHHHcCCHHHHH----HHHHCcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccccC-CCCCCHHHHHHHcCC
Confidence 79999999999999 78889998887 8999999999999999999999999999999 899999999999999
Q ss_pred ccchhhhhcccccccccc
Q 001476 111 LAVASVLLQSGASITLED 128 (1071)
Q Consensus 111 ~~iv~lLl~~Ga~v~l~d 128 (1071)
.+++++|+++|++++.+|
T Consensus 72 ~~~~~~Ll~~g~~~~~~n 89 (89)
T PF12796_consen 72 LEIVKLLLEHGADVNIRN 89 (89)
T ss_dssp HHHHHHHHHTTT-TTSS-
T ss_pred HHHHHHHHHcCCCCCCcC
Confidence 999999999999998764
No 27
>PHA02716 CPXV016; CPX019; EVM010; Provisional
Probab=99.50 E-value=2.3e-14 Score=176.69 Aligned_cols=125 Identities=20% Similarity=0.239 Sum_probs=86.9
Q ss_pred CHHHHHhCC-CCccccCCccccCCCCCCchHHHHHHHc--CCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCC-
Q 001476 1 MTELLVSHH-GQKQTLQSPARKSSLGGVQKDLCLAVRE--GSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQ- 76 (1071)
Q Consensus 1 Ive~LLe~g-a~~~~~~~~~~~~~~~~g~TpLh~Aa~~--G~~~~v~~iL~lLl~~Gadin~~d~~G~TpLH~Aa~~g~- 76 (1071)
++++|+++| ++.+... +..|.||||+|+.. ++.++++ +|+++|+|+|.+|..|.||||+|+..|+
T Consensus 157 iVk~LLe~G~ADIN~~~-------d~~G~TpLH~A~~n~~~~~eIVk----lLLe~GADVN~kD~~G~TPLH~Aa~~g~~ 225 (764)
T PHA02716 157 LIKYMVDVGIVNLNYVC-------KKTGYGILHAYLGNMYVDIDILE----WLCNNGVNVNLQNNHLITPLHTYLITGNV 225 (764)
T ss_pred HHHHHHHCCCCCccccc-------CCCCCcHHHHHHHhccCCHHHHH----HHHHcCCCCCCCCCCCCCHHHHHHHcCCC
Confidence 467888877 5433210 23456777776543 4566666 7777777777777777788888777774
Q ss_pred -HHHHHHHHhcCCCCCCCCCCCCccccccc-------------------------------------cccccccchhhhh
Q 001476 77 -VPIVRRLLAAGADPDARDGESGWSSLHRA-------------------------------------LHFGHLAVASVLL 118 (1071)
Q Consensus 77 -~eivk~LL~~GAd~~~~d~~~G~TpL~~A-------------------------------------~~~G~~~iv~lLl 118 (1071)
.++|++||++||+++.+| ..|+||||+| +..|+.+++++|+
T Consensus 226 ~~eIVklLLe~GADVN~kD-~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLL 304 (764)
T PHA02716 226 CASVIKKIIELGGDMDMKC-VNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFL 304 (764)
T ss_pred CHHHHHHHHHcCCCCCCCC-CCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHH
Confidence 377777777787777777 6777777754 3346677777777
Q ss_pred ccccccccccCCCCCCccc
Q 001476 119 QSGASITLEDCKSRTPVDL 137 (1071)
Q Consensus 119 ~~Ga~v~l~d~~G~tPLdl 137 (1071)
++|++++.+|..|+||+++
T Consensus 305 e~GAdIN~kD~~G~TPLH~ 323 (764)
T PHA02716 305 QPGVKLHYKDSAGRTCLHQ 323 (764)
T ss_pred hCCCceeccCCCCCCHHHH
Confidence 7777777777777777764
No 28
>PHA02874 ankyrin repeat protein; Provisional
Probab=99.50 E-value=3.6e-14 Score=167.93 Aligned_cols=129 Identities=21% Similarity=0.337 Sum_probs=113.9
Q ss_pred CHHHHHhCCCCccccCCccccCCCCCCchHHHHHHHcCCHHHHHHHH-------------------HHHHhCCCCCcccC
Q 001476 1 MTELLVSHHGQKQTLQSPARKSSLGGVQKDLCLAVREGSLADVESAL-------------------ALLKKNGGNINSRN 61 (1071)
Q Consensus 1 Ive~LLe~ga~~~~~~~~~~~~~~~~g~TpLh~Aa~~G~~~~v~~iL-------------------~lLl~~Gadin~~d 61 (1071)
||++|+++|++.... ...|.||||+|+..|+.++++.++ +.|++.|+++|.+|
T Consensus 50 iv~~Ll~~Ga~~n~~--------~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~ 121 (434)
T PHA02874 50 IVELFIKHGADINHI--------NTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKD 121 (434)
T ss_pred HHHHHHHCCCCCCCC--------CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCCC
Confidence 579999988875432 345679999999999999888443 34556677889999
Q ss_pred CCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCccccccccccccccchhhhhccccccccccCCCCCCcccC
Q 001476 62 IFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRALHFGHLAVASVLLQSGASITLEDCKSRTPVDLL 138 (1071)
Q Consensus 62 ~~G~TpLH~Aa~~g~~eivk~LL~~GAd~~~~d~~~G~TpL~~A~~~G~~~iv~lLl~~Ga~v~l~d~~G~tPLdl~ 138 (1071)
..|.||||+||..|+.+++++|+++|++++.+| ..|.||||+|+..++.+++++|+++|++++..+..|.+|++++
T Consensus 122 ~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d-~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A 197 (434)
T PHA02874 122 AELKTFLHYAIKKGDLESIKMLFEYGADVNIED-DNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNA 197 (434)
T ss_pred CCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcC-CCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence 999999999999999999999999999999999 8899999999999999999999999999999999999998764
No 29
>PHA02875 ankyrin repeat protein; Provisional
Probab=99.50 E-value=2.6e-14 Score=167.67 Aligned_cols=126 Identities=21% Similarity=0.323 Sum_probs=109.6
Q ss_pred CHHHHHhCCCCccccCCccccCCCCCCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHH
Q 001476 1 MTELLVSHHGQKQTLQSPARKSSLGGVQKDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIV 80 (1071)
Q Consensus 1 Ive~LLe~ga~~~~~~~~~~~~~~~~g~TpLh~Aa~~G~~~~v~~iL~lLl~~Gadin~~d~~G~TpLH~Aa~~g~~eiv 80 (1071)
++++|+++|++.... ...|.||||+|+..|+.++++ +|+++|+++|.+|..|.||||+|+..|+.+++
T Consensus 117 iv~~Ll~~gad~~~~--------~~~g~tpLh~A~~~~~~~~v~----~Ll~~g~~~~~~d~~g~TpL~~A~~~g~~eiv 184 (413)
T PHA02875 117 IMKLLIARGADPDIP--------NTDKFSPLHLAVMMGDIKGIE----LLIDHKACLDIEDCCGCTPLIIAMAKGDIAIC 184 (413)
T ss_pred HHHHHHhCCCCCCCC--------CCCCCCHHHHHHHcCCHHHHH----HHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHH
Confidence 478899888775432 346789999999999999998 88899999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCCCCCCccccccccccccccchhhhhccccccccc---cCCCCCCcccC
Q 001476 81 RRLLAAGADPDARDGESGWSSLHRALHFGHLAVASVLLQSGASITLE---DCKSRTPVDLL 138 (1071)
Q Consensus 81 k~LL~~GAd~~~~d~~~G~TpL~~A~~~G~~~iv~lLl~~Ga~v~l~---d~~G~tPLdl~ 138 (1071)
++|+++|++++..+...+.||+|+|+..++.+++++|+++|++++.. +..+.++++++
T Consensus 185 ~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~gad~n~~~~~~~~~~t~l~~~ 245 (413)
T PHA02875 185 KMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADCNIMFMIEGEECTILDMI 245 (413)
T ss_pred HHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHHCCcCcchHhhcCCCchHHHHHH
Confidence 99999999999999444468999999999999999999999999865 45677777654
No 30
>PHA02743 Viral ankyrin protein; Provisional
Probab=99.50 E-value=2.5e-14 Score=147.63 Aligned_cols=115 Identities=18% Similarity=0.263 Sum_probs=104.4
Q ss_pred CCCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHH---HHHHHhcCCCCCCCCCCCCccc
Q 001476 25 GGVQKDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPI---VRRLLAAGADPDARDGESGWSS 101 (1071)
Q Consensus 25 ~~g~TpLh~Aa~~G~~~~v~~iL~lLl~~Gadin~~d~~G~TpLH~Aa~~g~~ei---vk~LL~~GAd~~~~d~~~G~Tp 101 (1071)
..+.++||+||+.|+.+.+.+++++|++.|++++.+|..|+||||+||..|+.++ +++|+++|++++.+|...|+||
T Consensus 18 ~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d~~~g~Tp 97 (166)
T PHA02743 18 EDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINARELGTGNTL 97 (166)
T ss_pred cCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCCCCCCCCcH
Confidence 3456789999999999888888889999999999999999999999999988664 8999999999999984579999
Q ss_pred cccccccccccchhhhhc-cccccccccCCCCCCcccCC
Q 001476 102 LHRALHFGHLAVASVLLQ-SGASITLEDCKSRTPVDLLS 139 (1071)
Q Consensus 102 L~~A~~~G~~~iv~lLl~-~Ga~v~l~d~~G~tPLdl~s 139 (1071)
||+|+..++.+++++|+. .|++++..+..|.+|++++.
T Consensus 98 Lh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~ 136 (166)
T PHA02743 98 LHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAY 136 (166)
T ss_pred HHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHH
Confidence 999999999999999994 89999999999999998854
No 31
>PHA02859 ankyrin repeat protein; Provisional
Probab=99.49 E-value=4.3e-14 Score=151.37 Aligned_cols=109 Identities=19% Similarity=0.249 Sum_probs=97.4
Q ss_pred CCCCchHHHHHHHcC--CHHHHHHHHHHHHhCCCCCcccC-CCCCcHHHHHHhc---CCHHHHHHHHhcCCCCCCCCCCC
Q 001476 24 LGGVQKDLCLAVREG--SLADVESALALLKKNGGNINSRN-IFGLTPLHSAIWR---NQVPIVRRLLAAGADPDARDGES 97 (1071)
Q Consensus 24 ~~~g~TpLh~Aa~~G--~~~~v~~iL~lLl~~Gadin~~d-~~G~TpLH~Aa~~---g~~eivk~LL~~GAd~~~~d~~~ 97 (1071)
+..|.||||+|+..+ +.++++ +|+++|+++|.++ ..|.||||+|+.. ++.+++++|+++|++++.+| ..
T Consensus 48 ~~~g~TpLh~a~~~~~~~~eiv~----~Ll~~gadvn~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadin~~d-~~ 122 (209)
T PHA02859 48 NDLYETPIFSCLEKDKVNVEILK----FLIENGADVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSITEED-ED 122 (209)
T ss_pred CccCCCHHHHHHHcCCCCHHHHH----HHHHCCCCCCccCCCCCCCHHHHHHHhCccccHHHHHHHHHCCCCCCCcC-CC
Confidence 346789999999854 788888 8999999999997 5899999998864 47999999999999999999 89
Q ss_pred Cccccccccc--cccccchhhhhccccccccccCCCCCCccc
Q 001476 98 GWSSLHRALH--FGHLAVASVLLQSGASITLEDCKSRTPVDL 137 (1071)
Q Consensus 98 G~TpL~~A~~--~G~~~iv~lLl~~Ga~v~l~d~~G~tPLdl 137 (1071)
|+||||+|+. .++.+++++|+++|++++.+|..|.||++.
T Consensus 123 G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~ 164 (209)
T PHA02859 123 GKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYS 164 (209)
T ss_pred CCCHHHHHHHhccCCHHHHHHHHHcCCCcccccCCCCcHHHH
Confidence 9999999875 468999999999999999999999999974
No 32
>PHA03100 ankyrin repeat protein; Provisional
Probab=99.48 E-value=4e-14 Score=169.06 Aligned_cols=107 Identities=30% Similarity=0.405 Sum_probs=61.2
Q ss_pred CCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCC------CcHHHHHHhcCC--HHHHHHHHhcCCCCCCCCCCC
Q 001476 26 GVQKDLCLAVREGSLADVESALALLKKNGGNINSRNIFG------LTPLHSAIWRNQ--VPIVRRLLAAGADPDARDGES 97 (1071)
Q Consensus 26 ~g~TpLh~Aa~~G~~~~v~~iL~lLl~~Gadin~~d~~G------~TpLH~Aa~~g~--~eivk~LL~~GAd~~~~d~~~ 97 (1071)
.|.||||+|+..|+.++++ +|+++|++++..+..| .||||+|+..++ .+++++|+++|++++.+| ..
T Consensus 175 ~g~tpL~~A~~~~~~~iv~----~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d-~~ 249 (480)
T PHA03100 175 YGYTPLHIAVEKGNIDVIK----FLLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIKD-VY 249 (480)
T ss_pred CCCCHHHHHHHhCCHHHHH----HHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCC-CC
Confidence 3445555555555555555 4455555555555555 555555555555 555555555555555555 55
Q ss_pred CccccccccccccccchhhhhccccccccccCCCCCCccc
Q 001476 98 GWSSLHRALHFGHLAVASVLLQSGASITLEDCKSRTPVDL 137 (1071)
Q Consensus 98 G~TpL~~A~~~G~~~iv~lLl~~Ga~v~l~d~~G~tPLdl 137 (1071)
|+||||+|+..++.+++++|+++|++++..+..|.||+++
T Consensus 250 g~TpL~~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpl~~ 289 (480)
T PHA03100 250 GFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHI 289 (480)
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHH
Confidence 6666666666666666666666666666666666666544
No 33
>KOG0514 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.47 E-value=7.9e-15 Score=160.83 Aligned_cols=131 Identities=25% Similarity=0.386 Sum_probs=110.1
Q ss_pred cccCCCCCCchHHHHHHHcCCHHHHHHHHHHHHhCC-CCCcccCCCCC--------------------------------
Q 001476 19 ARKSSLGGVQKDLCLAVREGSLADVESALALLKKNG-GNINSRNIFGL-------------------------------- 65 (1071)
Q Consensus 19 ~~~~~~~~g~TpLh~Aa~~G~~~~v~~iL~lLl~~G-adin~~d~~G~-------------------------------- 65 (1071)
-.+..+.+|+|+|||++.++|+++|+ +|++.| +++|.+|.-|+
T Consensus 260 vVNlaDsNGNTALHYsVSHaNF~VV~----~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgnVNaK 335 (452)
T KOG0514|consen 260 VVNLADSNGNTALHYAVSHANFDVVS----ILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGDVNAK 335 (452)
T ss_pred HhhhhcCCCCeeeeeeecccchHHHH----HHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhccCcchh
Confidence 34445678899999999999999999 666666 56776665555
Q ss_pred ------cHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCccccccccccccccchhhhhcc-ccccccccCCCCCCcccC
Q 001476 66 ------TPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRALHFGHLAVASVLLQS-GASITLEDCKSRTPVDLL 138 (1071)
Q Consensus 66 ------TpLH~Aa~~g~~eivk~LL~~GAd~~~~d~~~G~TpL~~A~~~G~~~iv~lLl~~-Ga~v~l~d~~G~tPLdl~ 138 (1071)
|+||+|+..|+.++|+.||..|||+|++| .+|-|+|++|+.+||.+++++||.. +++..+.|.+|.|++.+
T Consensus 336 AsQ~gQTALMLAVSHGr~d~vk~LLacgAdVNiQD-dDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~I- 413 (452)
T KOG0514|consen 336 ASQHGQTALMLAVSHGRVDMVKALLACGADVNIQD-DDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSI- 413 (452)
T ss_pred hhhhcchhhhhhhhcCcHHHHHHHHHccCCCcccc-CCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhh-
Confidence 66666667899999999999999999999 8999999999999999999999876 89999999999999966
Q ss_pred CCCceeeeccccccccceeeecc
Q 001476 139 SGPVLQVVGSGYNSVATEVFSWG 161 (1071)
Q Consensus 139 sg~v~qa~~~~~~~~~g~VYsWG 161 (1071)
+...+|..++.-+|+.=
T Consensus 414 ------Aleagh~eIa~mlYa~~ 430 (452)
T KOG0514|consen 414 ------ALEAGHREIAVMLYAHM 430 (452)
T ss_pred ------HHhcCchHHHHHHHHHH
Confidence 66778888877777643
No 34
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=99.47 E-value=6.8e-14 Score=177.97 Aligned_cols=124 Identities=24% Similarity=0.311 Sum_probs=90.0
Q ss_pred CHHHHHhCCCCccccCCccccCCCCCCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHH-
Q 001476 1 MTELLVSHHGQKQTLQSPARKSSLGGVQKDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPI- 79 (1071)
Q Consensus 1 Ive~LLe~ga~~~~~~~~~~~~~~~~g~TpLh~Aa~~G~~~~v~~iL~lLl~~Gadin~~d~~G~TpLH~Aa~~g~~ei- 79 (1071)
+++.||++|++.+.. +..|.||||+||..|+.++++ +|+++|+|+|.+|.+|+||||+|+..|+.++
T Consensus 540 ~l~~Ll~~G~d~n~~--------d~~G~TpLh~Aa~~g~~~~v~----~Ll~~gadin~~d~~G~TpL~~A~~~g~~~iv 607 (823)
T PLN03192 540 LLEELLKAKLDPDIG--------DSKGRTPLHIAASKGYEDCVL----VLLKHACNVHIRDANGNTALWNAISAKHHKIF 607 (823)
T ss_pred HHHHHHHCCCCCCCC--------CCCCCCHHHHHHHcChHHHHH----HHHhcCCCCCCcCCCCCCHHHHHHHhCCHHHH
Confidence 468889887774432 356789999999999999988 8888999999999999999987766665555
Q ss_pred ------------------------------HHHHHhcCCCCCCCCCCCCccccccccccccccchhhhhccccccccccC
Q 001476 80 ------------------------------VRRLLAAGADPDARDGESGWSSLHRALHFGHLAVASVLLQSGASITLEDC 129 (1071)
Q Consensus 80 ------------------------------vk~LL~~GAd~~~~d~~~G~TpL~~A~~~G~~~iv~lLl~~Ga~v~l~d~ 129 (1071)
+++|+++|+++|.+| ..|+||||+|+..|+.+++++|+++|++++..+.
T Consensus 608 ~~L~~~~~~~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d-~~G~TpLh~A~~~g~~~iv~~Ll~~GAdv~~~~~ 686 (823)
T PLN03192 608 RILYHFASISDPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSED-HQGATALQVAMAEDHVDMVRLLIMNGADVDKANT 686 (823)
T ss_pred HHHHhcCcccCcccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCC-CCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCCCC
Confidence 455556666666666 5666666666666666666666666666666666
Q ss_pred CC-CCCccc
Q 001476 130 KS-RTPVDL 137 (1071)
Q Consensus 130 ~G-~tPLdl 137 (1071)
.| .+|.++
T Consensus 687 ~g~~t~~~l 695 (823)
T PLN03192 687 DDDFSPTEL 695 (823)
T ss_pred CCCCCHHHH
Confidence 55 445443
No 35
>PHA02884 ankyrin repeat protein; Provisional
Probab=99.47 E-value=6.2e-14 Score=157.13 Aligned_cols=109 Identities=21% Similarity=0.217 Sum_probs=100.0
Q ss_pred CchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccC----CCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCcccc
Q 001476 27 VQKDLCLAVREGSLADVESALALLKKNGGNINSRN----IFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSL 102 (1071)
Q Consensus 27 g~TpLh~Aa~~G~~~~v~~iL~lLl~~Gadin~~d----~~G~TpLH~Aa~~g~~eivk~LL~~GAd~~~~d~~~G~TpL 102 (1071)
-.++||.|+..|+.++++ +|+++|+|+|.++ ..|.||||+|+..++.+++++|+++||+++..+...|.|||
T Consensus 33 ~~~lL~~A~~~~~~eivk----~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~TpL 108 (300)
T PHA02884 33 IANILYSSIKFHYTDIID----AILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITPL 108 (300)
T ss_pred CCHHHHHHHHcCCHHHHH----HHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCCHH
Confidence 346788888889999999 8999999999984 58999999999999999999999999999997536799999
Q ss_pred ccccccccccchhhhhccccccccccCCCCCCcccCC
Q 001476 103 HRALHFGHLAVASVLLQSGASITLEDCKSRTPVDLLS 139 (1071)
Q Consensus 103 ~~A~~~G~~~iv~lLl~~Ga~v~l~d~~G~tPLdl~s 139 (1071)
|+|+..++.+++++|+.+|++++..+..|.||++++.
T Consensus 109 h~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~ 145 (300)
T PHA02884 109 YISVLHGCLKCLEILLSYGADINIQTNDMVTPIELAL 145 (300)
T ss_pred HHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Confidence 9999999999999999999999999999999998753
No 36
>PHA02795 ankyrin-like protein; Provisional
Probab=99.45 E-value=6.8e-14 Score=162.78 Aligned_cols=124 Identities=18% Similarity=0.146 Sum_probs=110.4
Q ss_pred CHHHHHhCCCCccccCCccccCCCCCCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccC------CCCCcHHHHHHhc
Q 001476 1 MTELLVSHHGQKQTLQSPARKSSLGGVQKDLCLAVREGSLADVESALALLKKNGGNINSRN------IFGLTPLHSAIWR 74 (1071)
Q Consensus 1 Ive~LLe~ga~~~~~~~~~~~~~~~~g~TpLh~Aa~~G~~~~v~~iL~lLl~~Gadin~~d------~~G~TpLH~Aa~~ 74 (1071)
||++||+||+++... ++.||||.|+..++.++++ +|+.+|++.+... ..+.|++|.|+..
T Consensus 133 iV~~LI~~GADIn~~----------~~~t~lh~A~~~~~~eIVk----~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~ 198 (437)
T PHA02795 133 IVDFMVDHGAVIYKI----------ECLNAYFRGICKKESSVVE----FILNCGIPDENDVKLDLYKIIQYTRGFLVDEP 198 (437)
T ss_pred HHHHHHHCCCCCCCC----------CCCCHHHHHHHcCcHHHHH----HHHhcCCcccccccchhhhhhccchhHHHHhc
Confidence 589999999997641 2358999999999999999 8999998543222 3588999999999
Q ss_pred CCHHHHHHHHhcCCCCCCCCCCCCccccccccccccccchhhhhccccccccccCCCCCCcccCC
Q 001476 75 NQVPIVRRLLAAGADPDARDGESGWSSLHRALHFGHLAVASVLLQSGASITLEDCKSRTPVDLLS 139 (1071)
Q Consensus 75 g~~eivk~LL~~GAd~~~~d~~~G~TpL~~A~~~G~~~iv~lLl~~Ga~v~l~d~~G~tPLdl~s 139 (1071)
++.+++++|+++||+++.+| ..|+||||+|+..|+.+++++|+++|++++..+..|.||++++.
T Consensus 199 ~~~eIve~LIs~GADIN~kD-~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN~~d~~G~TpLh~Aa 262 (437)
T PHA02795 199 TVLEIYKLCIPYIEDINQLD-AGGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTCLDVAV 262 (437)
T ss_pred CHHHHHHHHHhCcCCcCcCC-CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHH
Confidence 99999999999999999999 89999999999999999999999999999999999999998754
No 37
>PHA02798 ankyrin-like protein; Provisional
Probab=99.45 E-value=8.6e-14 Score=167.25 Aligned_cols=80 Identities=19% Similarity=0.286 Sum_probs=51.9
Q ss_pred HHHHHhCCCCccccCCccccCCCCCCchHHHHHHHcC---CHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCC--
Q 001476 2 TELLVSHHGQKQTLQSPARKSSLGGVQKDLCLAVREG---SLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQ-- 76 (1071)
Q Consensus 2 ve~LLe~ga~~~~~~~~~~~~~~~~g~TpLh~Aa~~G---~~~~v~~iL~lLl~~Gadin~~d~~G~TpLH~Aa~~g~-- 76 (1071)
+++|+++|++.+.. +..|.||||+|+..+ +.++++ +|+++|+|+|.+|..|.||||+|+..++
T Consensus 92 v~~Ll~~GadiN~~--------d~~G~TpLh~a~~~~~~~~~~iv~----~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~ 159 (489)
T PHA02798 92 VKILIENGADINKK--------NSDGETPLYCLLSNGYINNLEILL----FMIENGADTTLLDKDGFTMLQVYLQSNHHI 159 (489)
T ss_pred HHHHHHCCCCCCCC--------CCCcCcHHHHHHHcCCcChHHHHH----HHHHcCCCccccCCCCCcHHHHHHHcCCcc
Confidence 45566655553321 235667777777765 445555 7777777777777777777777777766
Q ss_pred -HHHHHHHHhcCCCCCCC
Q 001476 77 -VPIVRRLLAAGADPDAR 93 (1071)
Q Consensus 77 -~eivk~LL~~GAd~~~~ 93 (1071)
.+++++|+++|++++..
T Consensus 160 ~~~vv~~Ll~~gadin~~ 177 (489)
T PHA02798 160 DIEIIKLLLEKGVDINTH 177 (489)
T ss_pred hHHHHHHHHHhCCCcccc
Confidence 67777777766665544
No 38
>PHA02798 ankyrin-like protein; Provisional
Probab=99.45 E-value=8.5e-14 Score=167.33 Aligned_cols=124 Identities=23% Similarity=0.378 Sum_probs=104.7
Q ss_pred CHHHHHhCCCCccccCCccccCCCCCCchHHHHHHHc-----CCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcC
Q 001476 1 MTELLVSHHGQKQTLQSPARKSSLGGVQKDLCLAVRE-----GSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRN 75 (1071)
Q Consensus 1 Ive~LLe~ga~~~~~~~~~~~~~~~~g~TpLh~Aa~~-----G~~~~v~~iL~lLl~~Gadin~~d~~G~TpLH~Aa~~g 75 (1071)
|+++||++|++++.. ...|.||||.|+.. ++.++++ +|+++|+|+|.+|..|+||||+|+..+
T Consensus 53 iv~~Ll~~Gadvn~~--------d~~g~TpL~~~~~n~~~~~~~~~iv~----~Ll~~GadiN~~d~~G~TpLh~a~~~~ 120 (489)
T PHA02798 53 IVKLFINLGANVNGL--------DNEYSTPLCTILSNIKDYKHMLDIVK----ILIENGADINKKNSDGETPLYCLLSNG 120 (489)
T ss_pred HHHHHHHCCCCCCCC--------CCCCCChHHHHHHhHHhHHhHHHHHH----HHHHCCCCCCCCCCCcCcHHHHHHHcC
Confidence 589999998876543 34677999998864 4445555 999999999999999999999999875
Q ss_pred ---CHHHHHHHHhcCCCCCCCCCCCCcccccccccccc---ccchhhhhccccccccccC-CCCCCccc
Q 001476 76 ---QVPIVRRLLAAGADPDARDGESGWSSLHRALHFGH---LAVASVLLQSGASITLEDC-KSRTPVDL 137 (1071)
Q Consensus 76 ---~~eivk~LL~~GAd~~~~d~~~G~TpL~~A~~~G~---~~iv~lLl~~Ga~v~l~d~-~G~tPLdl 137 (1071)
+.+++++|+++|++++..| ..|+||||+|+..++ .+++++|+++|++++..+. .+.+|++.
T Consensus 121 ~~~~~~iv~~Ll~~Gadvn~~d-~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~ 188 (489)
T PHA02798 121 YINNLEILLFMIENGADTTLLD-KDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHC 188 (489)
T ss_pred CcChHHHHHHHHHcCCCccccC-CCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHH
Confidence 7899999999999999999 889999999999887 8999999999999988754 67777754
No 39
>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]
Probab=99.45 E-value=8.1e-14 Score=139.50 Aligned_cols=105 Identities=33% Similarity=0.558 Sum_probs=61.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCC-CCCcccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCccccccccccc
Q 001476 31 LCLAVREGSLADVESALALLKKNG-GNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRALHFG 109 (1071)
Q Consensus 31 Lh~Aa~~G~~~~v~~iL~lLl~~G-adin~~d~~G~TpLH~Aa~~g~~eivk~LL~~GAd~~~~d~~~G~TpL~~A~~~G 109 (1071)
+.+|+..+.+..|+ .|++.. --+|.+|.+|+||||-|+.+||.+||+.|+..||+++.+. ..||||||-||...
T Consensus 67 ~lwaae~nrl~eV~----~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T-~~GWTPLhSAckWn 141 (228)
T KOG0512|consen 67 LLWAAEKNRLTEVQ----RLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKT-NEGWTPLHSACKWN 141 (228)
T ss_pred HHHHHhhccHHHHH----HHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCccccc-ccCccchhhhhccc
Confidence 45555555555555 222222 2356666666666666666666666666666666666665 55666666666666
Q ss_pred cccchhhhhccccccccccCCCCCCcccCCC
Q 001476 110 HLAVASVLLQSGASITLEDCKSRTPVDLLSG 140 (1071)
Q Consensus 110 ~~~iv~lLl~~Ga~v~l~d~~G~tPLdl~sg 140 (1071)
+.+|+.+|+++|++++.......+|+++..+
T Consensus 142 N~~va~~LLqhgaDVnA~t~g~ltpLhlaa~ 172 (228)
T KOG0512|consen 142 NFEVAGRLLQHGADVNAQTKGLLTPLHLAAG 172 (228)
T ss_pred chhHHHHHHhccCcccccccccchhhHHhhc
Confidence 6666666666666666666556666665554
No 40
>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]
Probab=99.45 E-value=1.1e-13 Score=138.46 Aligned_cols=116 Identities=26% Similarity=0.221 Sum_probs=100.8
Q ss_pred ccccCCCCCCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCC
Q 001476 18 PARKSSLGGVQKDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGES 97 (1071)
Q Consensus 18 ~~~~~~~~~g~TpLh~Aa~~G~~~~v~~iL~lLl~~Gadin~~d~~G~TpLH~Aa~~g~~eivk~LL~~GAd~~~~d~~~ 97 (1071)
+..++.+.+++||||.|+.+|+.++++ .|+..|+|++.+...||||||-||.+++.+++.+||.+|+|+|+.. ..
T Consensus 88 n~vNtrD~D~YTpLHRAaYn~h~div~----~ll~~gAn~~a~T~~GWTPLhSAckWnN~~va~~LLqhgaDVnA~t-~g 162 (228)
T KOG0512|consen 88 NHVNTRDEDEYTPLHRAAYNGHLDIVH----ELLLSGANKEAKTNEGWTPLHSACKWNNFEVAGRLLQHGADVNAQT-KG 162 (228)
T ss_pred ccccccccccccHHHHHHhcCchHHHH----HHHHccCCcccccccCccchhhhhcccchhHHHHHHhccCcccccc-cc
Confidence 344566789999999999999999999 7778999999999999999999999999999999999999999998 77
Q ss_pred Cccccccccccccc-cchhhh-hccccccccccCCCCCCcccC
Q 001476 98 GWSSLHRALHFGHL-AVASVL-LQSGASITLEDCKSRTPVDLL 138 (1071)
Q Consensus 98 G~TpL~~A~~~G~~-~iv~lL-l~~Ga~v~l~d~~G~tPLdl~ 138 (1071)
.+||||+|+...+. ..+.+| +..+..+...++.+.++++++
T Consensus 163 ~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iA 205 (228)
T KOG0512|consen 163 LLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIA 205 (228)
T ss_pred cchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHH
Confidence 89999999876654 444544 456788888899999988764
No 41
>PHA02716 CPXV016; CPX019; EVM010; Provisional
Probab=99.45 E-value=1.2e-13 Score=170.38 Aligned_cols=123 Identities=23% Similarity=0.257 Sum_probs=104.1
Q ss_pred CHHHHHhCCCCccccCCccccCCCCCCchHHHHHH-------------------------------------HcCCHHHH
Q 001476 1 MTELLVSHHGQKQTLQSPARKSSLGGVQKDLCLAV-------------------------------------REGSLADV 43 (1071)
Q Consensus 1 Ive~LLe~ga~~~~~~~~~~~~~~~~g~TpLh~Aa-------------------------------------~~G~~~~v 43 (1071)
||++||++|++++.. +..|+||||+|+ ..|+.+++
T Consensus 229 IVklLLe~GADVN~k--------D~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiV 300 (764)
T PHA02716 229 VIKKIIELGGDMDMK--------CVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVV 300 (764)
T ss_pred HHHHHHHcCCCCCCC--------CCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHH
Confidence 478888888775532 346789999764 33555555
Q ss_pred HHHHHHHHhCCCCCcccCCCCCcHHHHHHh--cCCHHHHHHHHhcCCCCCCCCCCCCccccccccc--------------
Q 001476 44 ESALALLKKNGGNINSRNIFGLTPLHSAIW--RNQVPIVRRLLAAGADPDARDGESGWSSLHRALH-------------- 107 (1071)
Q Consensus 44 ~~iL~lLl~~Gadin~~d~~G~TpLH~Aa~--~g~~eivk~LL~~GAd~~~~d~~~G~TpL~~A~~-------------- 107 (1071)
+ +|+++|+++|.+|..|+||||+|+. .++.+++++|+++|++++.+| ..|+||||+|+.
T Consensus 301 k----lLLe~GAdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD-~~G~TPLH~A~~~lav~~~ld~~~~~ 375 (764)
T PHA02716 301 Y----SFLQPGVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPD-NIGNTVLHTYLSMLSVVNILDPETDN 375 (764)
T ss_pred H----HHHhCCCceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCccCC-CCCCCHHHHHHHhhhhhccccccccc
Confidence 5 8899999999999999999999874 468999999999999999999 899999999864
Q ss_pred cccccchhhhhccccccccccCCCCCCcc
Q 001476 108 FGHLAVASVLLQSGASITLEDCKSRTPVD 136 (1071)
Q Consensus 108 ~G~~~iv~lLl~~Ga~v~l~d~~G~tPLd 136 (1071)
.++.+++++|+++|++++..+..|.||++
T Consensus 376 ~~~~eVVklLL~~GADIn~kn~~G~TPLh 404 (764)
T PHA02716 376 DIRLDVIQCLISLGADITAVNCLGYTPLT 404 (764)
T ss_pred cChHHHHHHHHHCCCCCCCcCCCCCChHH
Confidence 36889999999999999999999999997
No 42
>PHA02989 ankyrin repeat protein; Provisional
Probab=99.44 E-value=1.1e-13 Score=166.41 Aligned_cols=108 Identities=16% Similarity=0.269 Sum_probs=58.9
Q ss_pred CCchHHHHHHHc--CCHHHHHHHHHHHHhCCCCCcc-cCCCCCcHHHHHHhcC----CHHHHHHHHhcCCCCCCCCC---
Q 001476 26 GVQKDLCLAVRE--GSLADVESALALLKKNGGNINS-RNIFGLTPLHSAIWRN----QVPIVRRLLAAGADPDARDG--- 95 (1071)
Q Consensus 26 ~g~TpLh~Aa~~--G~~~~v~~iL~lLl~~Gadin~-~d~~G~TpLH~Aa~~g----~~eivk~LL~~GAd~~~~d~--- 95 (1071)
.|.||||+|+.. ++.++++ +|+++|+|++. .+..|.||||+|+..+ +.+++++|+++|++++..|.
T Consensus 144 ~g~tpLh~a~~~~~~~~~iv~----~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~ 219 (494)
T PHA02989 144 RGYNLLHMYLESFSVKKDVIK----ILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSE 219 (494)
T ss_pred CCCCHHHHHHHhccCCHHHHH----HHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccc
Confidence 344555555432 3444444 55555555555 3445555555554432 55555555555554443220
Q ss_pred ----------------------------------CCCccccccccccccccchhhhhccccccccccCCCCCCccc
Q 001476 96 ----------------------------------ESGWSSLHRALHFGHLAVASVLLQSGASITLEDCKSRTPVDL 137 (1071)
Q Consensus 96 ----------------------------------~~G~TpL~~A~~~G~~~iv~lLl~~Ga~v~l~d~~G~tPLdl 137 (1071)
..|+||||+|+..++.+++++|+++|++++..+..|.||+++
T Consensus 220 t~l~~~~~~~~~~~~~~~~il~~l~~~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadin~~d~~G~TpL~~ 295 (494)
T PHA02989 220 SVLESFLDNNKILSKKEFKVLNFILKYIKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDIYNVSKDGDTVLTY 295 (494)
T ss_pred cHHHHHHHhchhhcccchHHHHHHHhCCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCCccccCCCCCCHHHH
Confidence 236666666666666666666666666666666666666654
No 43
>PHA02795 ankyrin-like protein; Provisional
Probab=99.44 E-value=1.1e-13 Score=161.06 Aligned_cols=122 Identities=22% Similarity=0.159 Sum_probs=104.1
Q ss_pred CHHHHHhCCCCccccCCccccCCCCCCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHH
Q 001476 1 MTELLVSHHGQKQTLQSPARKSSLGGVQKDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIV 80 (1071)
Q Consensus 1 Ive~LLe~ga~~~~~~~~~~~~~~~~g~TpLh~Aa~~G~~~~v~~iL~lLl~~Gadin~~d~~G~TpLH~Aa~~g~~eiv 80 (1071)
|+++|+++|++..+..+.... ...+.|++|.|+..++.++++ +|+++|+|+|.+|..|.||||+|+..|+.+++
T Consensus 164 IVk~Lls~Ga~~~n~~~~~l~--~~~~~t~l~~a~~~~~~eIve----~LIs~GADIN~kD~~G~TpLh~Aa~~g~~eiV 237 (437)
T PHA02795 164 VVEFILNCGIPDENDVKLDLY--KIIQYTRGFLVDEPTVLEIYK----LCIPYIEDINQLDAGGRTLLYRAIYAGYIDLV 237 (437)
T ss_pred HHHHHHhcCCcccccccchhh--hhhccchhHHHHhcCHHHHHH----HHHhCcCCcCcCCCCCCCHHHHHHHcCCHHHH
Confidence 589999999865443211000 123668999999999999988 89999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCCCCCCccccccccccc--------cccchhhhhccccccccccC
Q 001476 81 RRLLAAGADPDARDGESGWSSLHRALHFG--------HLAVASVLLQSGASITLEDC 129 (1071)
Q Consensus 81 k~LL~~GAd~~~~d~~~G~TpL~~A~~~G--------~~~iv~lLl~~Ga~v~l~d~ 129 (1071)
++|+++||+++.+| ..|+||||+|+..| +.+++++|+++|++++....
T Consensus 238 elLL~~GAdIN~~d-~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gadI~~~~~ 293 (437)
T PHA02795 238 SWLLENGANVNAVM-SNGYTCLDVAVDRGSVIARRETHLKILEILLREPLSIDCIKL 293 (437)
T ss_pred HHHHHCCCCCCCcC-CCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCCCCCchhH
Confidence 99999999999999 88999999999988 46899999999998876543
No 44
>PHA03095 ankyrin-like protein; Provisional
Probab=99.44 E-value=1.4e-13 Score=163.86 Aligned_cols=109 Identities=27% Similarity=0.341 Sum_probs=96.3
Q ss_pred CCCchHHHHHHHc--CCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCH--HHHHHHHhcCCCCCCCCCCCCcc
Q 001476 25 GGVQKDLCLAVRE--GSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQV--PIVRRLLAAGADPDARDGESGWS 100 (1071)
Q Consensus 25 ~~g~TpLh~Aa~~--G~~~~v~~iL~lLl~~Gadin~~d~~G~TpLH~Aa~~g~~--eivk~LL~~GAd~~~~d~~~G~T 100 (1071)
..|.||||+++.. ++.++++ +|+++|++++.+|..|+||||+||..++. .+++.|+..|++++.+| ..|+|
T Consensus 185 ~~g~t~Lh~~~~~~~~~~~i~~----~Ll~~g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~din~~d-~~g~T 259 (471)
T PHA03095 185 DRFRSLLHHHLQSFKPRARIVR----ELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARN-RYGQT 259 (471)
T ss_pred CCCCCHHHHHHHHCCCcHHHHH----HHHHcCCCCcccCCCCCCHHHHHHhcCCchHHHHHHHHHcCCCCCCcC-CCCCC
Confidence 4577888888865 5556666 88889999999999999999999998875 58889999999999999 88999
Q ss_pred ccccccccccccchhhhhccccccccccCCCCCCcccC
Q 001476 101 SLHRALHFGHLAVASVLLQSGASITLEDCKSRTPVDLL 138 (1071)
Q Consensus 101 pL~~A~~~G~~~iv~lLl~~Ga~v~l~d~~G~tPLdl~ 138 (1071)
|||+|+..|+.+++++|+++|++++..+..|.||++++
T Consensus 260 pLh~A~~~~~~~~v~~LL~~gad~n~~~~~g~tpl~~A 297 (471)
T PHA03095 260 PLHYAAVFNNPRACRRLIALGADINAVSSDGNTPLSLM 297 (471)
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHH
Confidence 99999999999999999999999999999999999774
No 45
>PHA02736 Viral ankyrin protein; Provisional
Probab=99.43 E-value=9.3e-14 Score=141.08 Aligned_cols=98 Identities=20% Similarity=0.259 Sum_probs=61.4
Q ss_pred CCCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccC-CCCCcHHHHHHhcCCHHHHHHHHh-cCCCCCCCCCCCCcccc
Q 001476 25 GGVQKDLCLAVREGSLADVESALALLKKNGGNINSRN-IFGLTPLHSAIWRNQVPIVRRLLA-AGADPDARDGESGWSSL 102 (1071)
Q Consensus 25 ~~g~TpLh~Aa~~G~~~~v~~iL~lLl~~Gadin~~d-~~G~TpLH~Aa~~g~~eivk~LL~-~GAd~~~~d~~~G~TpL 102 (1071)
..|.||||+|+..|+.+.++ ++++|+++|+++|.++ ..|.||||+|+..++.+++++|+. .|++++.+| ..|+|||
T Consensus 53 ~~g~t~Lh~a~~~~~~~~~e-~v~~Ll~~gadin~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~-~~g~tpL 130 (154)
T PHA02736 53 RHGKQCVHIVSNPDKADPQE-KLKLLMEWGADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILN-YAFKTPY 130 (154)
T ss_pred CCCCEEEEeecccCchhHHH-HHHHHHHcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcccc-CCCCCHH
Confidence 34556666666665544322 3346666666666666 366666666666666666666665 366666666 5666666
Q ss_pred ccccccccccchhhhhcccccc
Q 001476 103 HRALHFGHLAVASVLLQSGASI 124 (1071)
Q Consensus 103 ~~A~~~G~~~iv~lLl~~Ga~v 124 (1071)
|+|+..|+.+++++|+.+|+++
T Consensus 131 ~~A~~~~~~~i~~~Ll~~ga~~ 152 (154)
T PHA02736 131 YVACERHDAKMMNILRAKGAQC 152 (154)
T ss_pred HHHHHcCCHHHHHHHHHcCCCC
Confidence 6666666666666666666654
No 46
>PHA03100 ankyrin repeat protein; Provisional
Probab=99.42 E-value=2e-13 Score=163.09 Aligned_cols=124 Identities=25% Similarity=0.333 Sum_probs=89.7
Q ss_pred CHHHHHhCCCCccccCCccccCCCCCCchHHHH-----HHHcCCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHH--h
Q 001476 1 MTELLVSHHGQKQTLQSPARKSSLGGVQKDLCL-----AVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAI--W 73 (1071)
Q Consensus 1 Ive~LLe~ga~~~~~~~~~~~~~~~~g~TpLh~-----Aa~~G~~~~v~~iL~lLl~~Gadin~~d~~G~TpLH~Aa--~ 73 (1071)
+|++||++|++.... ...+.||||+ |+..++.++++ +|+++|+++|..|..|.||||+|+ .
T Consensus 50 ivk~Ll~~g~~~~~~--------~~~~~t~L~~~~~~~a~~~~~~~iv~----~Ll~~ga~i~~~d~~g~tpL~~A~~~~ 117 (480)
T PHA03100 50 VVKILLDNGADINSS--------TKNNSTPLHYLSNIKYNLTDVKEIVK----LLLEYGANVNAPDNNGITPLLYAISKK 117 (480)
T ss_pred HHHHHHHcCCCCCCc--------cccCcCHHHHHHHHHHHhhchHHHHH----HHHHCCCCCCCCCCCCCchhhHHHhcc
Confidence 467777776654321 2345577777 77777777777 667777777777777777777777 7
Q ss_pred cCCHHHHHHHHhcCCCCCCCCCCCCccccccccccc--cccchhhhhccccccccccCCCCCCccc
Q 001476 74 RNQVPIVRRLLAAGADPDARDGESGWSSLHRALHFG--HLAVASVLLQSGASITLEDCKSRTPVDL 137 (1071)
Q Consensus 74 ~g~~eivk~LL~~GAd~~~~d~~~G~TpL~~A~~~G--~~~iv~lLl~~Ga~v~l~d~~G~tPLdl 137 (1071)
.|+.+++++|+++|++++..+ ..|+||||+|+..+ +.+++++|+++|++++..+..|.+|+++
T Consensus 118 ~~~~~iv~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL~~ 182 (480)
T PHA03100 118 SNSYSIVEYLLDNGANVNIKN-SDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGYTPLHI 182 (480)
T ss_pred cChHHHHHHHHHcCCCCCccC-CCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCCCHHHH
Confidence 777777777777777777777 66777777777777 7777777777777777777777777655
No 47
>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]
Probab=99.41 E-value=1.2e-13 Score=147.14 Aligned_cols=117 Identities=32% Similarity=0.376 Sum_probs=108.9
Q ss_pred CCCCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCccccc
Q 001476 24 LGGVQKDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLH 103 (1071)
Q Consensus 24 ~~~g~TpLh~Aa~~G~~~~v~~iL~lLl~~Gadin~~d~~G~TpLH~Aa~~g~~eivk~LL~~GAd~~~~d~~~G~TpL~ 103 (1071)
+..|.+|||+||+.|+..+++ .|+..|+.+|..+....||||+|+..||.++|+.||++.+|+|..+ +.|.||||
T Consensus 31 ddhgfsplhwaakegh~aive----mll~rgarvn~tnmgddtplhlaaahghrdivqkll~~kadvnavn-ehgntplh 105 (448)
T KOG0195|consen 31 DDHGFSPLHWAAKEGHVAIVE----MLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADVNAVN-EHGNTPLH 105 (448)
T ss_pred cccCcchhhhhhhcccHHHHH----HHHhcccccccccCCCCcchhhhhhcccHHHHHHHHHHhcccchhh-ccCCCchh
Confidence 356788999999999999988 8889999999999989999999999999999999999999999999 99999999
Q ss_pred cccccccccchhhhhccccccccccCCCCCCcccCCCCceee
Q 001476 104 RALHFGHLAVASVLLQSGASITLEDCKSRTPVDLLSGPVLQV 145 (1071)
Q Consensus 104 ~A~~~G~~~iv~lLl~~Ga~v~l~d~~G~tPLdl~sg~v~qa 145 (1071)
+||..|.-.+++-|+..|+-+++.+..|.+|++.+.-+++..
T Consensus 106 yacfwgydqiaedli~~ga~v~icnk~g~tpldkakp~l~~~ 147 (448)
T KOG0195|consen 106 YACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKAKPMLKNT 147 (448)
T ss_pred hhhhhcHHHHHHHHHhccceeeecccCCCCchhhhchHHHHH
Confidence 999999999999999999999999999999998877665443
No 48
>PHA02741 hypothetical protein; Provisional
Probab=99.41 E-value=4.6e-13 Score=138.55 Aligned_cols=101 Identities=20% Similarity=0.174 Sum_probs=92.1
Q ss_pred CCCCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCC-CCCcHHHHHHhcCCHHHHHHHHh-cCCCCCCCCCCCCccc
Q 001476 24 LGGVQKDLCLAVREGSLADVESALALLKKNGGNINSRNI-FGLTPLHSAIWRNQVPIVRRLLA-AGADPDARDGESGWSS 101 (1071)
Q Consensus 24 ~~~g~TpLh~Aa~~G~~~~v~~iL~lLl~~Gadin~~d~-~G~TpLH~Aa~~g~~eivk~LL~-~GAd~~~~d~~~G~Tp 101 (1071)
+..|.||||+|+..|+..++.+++++|+.+|+++|.++. .|+||||+|+..++.+++++||. .|++++..| ..|+||
T Consensus 57 d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n-~~g~tp 135 (169)
T PHA02741 57 DDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCN-ADNKSP 135 (169)
T ss_pred CCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCC-CCCCCH
Confidence 456789999999999987777778899999999999985 99999999999999999999997 599999999 899999
Q ss_pred cccccccccccchhhhhccccccc
Q 001476 102 LHRALHFGHLAVASVLLQSGASIT 125 (1071)
Q Consensus 102 L~~A~~~G~~~iv~lLl~~Ga~v~ 125 (1071)
||+|...++.+++++|+++++...
T Consensus 136 L~~A~~~~~~~iv~~L~~~~~~~~ 159 (169)
T PHA02741 136 FELAIDNEDVAMMQILREIVATSR 159 (169)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhc
Confidence 999999999999999999876643
No 49
>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]
Probab=99.40 E-value=2e-13 Score=141.11 Aligned_cols=113 Identities=25% Similarity=0.228 Sum_probs=106.4
Q ss_pred cCCCCCCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCcc
Q 001476 21 KSSLGGVQKDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWS 100 (1071)
Q Consensus 21 ~~~~~~g~TpLh~Aa~~G~~~~v~~iL~lLl~~Gadin~~d~~G~TpLH~Aa~~g~~eivk~LL~~GAd~~~~d~~~G~T 100 (1071)
+.++..|.|||++|+..|++.+|+ +|+..|+|++..-....++|++|+..|..++|++||.++.|+|..| .+|.|
T Consensus 154 N~~De~GfTpLiWAaa~G~i~vV~----fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~vdVNvyD-wNGgT 228 (296)
T KOG0502|consen 154 NACDEFGFTPLIWAAAKGHIPVVQ----FLLNSGADPDALGKYRESALSLATRGGYTDIVELLLTREVDVNVYD-WNGGT 228 (296)
T ss_pred cCccccCchHhHHHHhcCchHHHH----HHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCcceec-cCCCc
Confidence 344567899999999999999999 9999999999999999999999999999999999999999999999 78999
Q ss_pred ccccccccccccchhhhhccccccccccCCCCCCcccC
Q 001476 101 SLHRALHFGHLAVASVLLQSGASITLEDCKSRTPVDLL 138 (1071)
Q Consensus 101 pL~~A~~~G~~~iv~lLl~~Ga~v~l~d~~G~tPLdl~ 138 (1071)
||-+|++-+|.+|++.|++.|++++..+..|..+++++
T Consensus 229 pLlyAvrgnhvkcve~Ll~sGAd~t~e~dsGy~~mdlA 266 (296)
T KOG0502|consen 229 PLLYAVRGNHVKCVESLLNSGADVTQEDDSGYWIMDLA 266 (296)
T ss_pred eeeeeecCChHHHHHHHHhcCCCcccccccCCcHHHHH
Confidence 99999999999999999999999999999999998773
No 50
>PHA02946 ankyin-like protein; Provisional
Probab=99.40 E-value=3e-13 Score=160.72 Aligned_cols=125 Identities=19% Similarity=0.298 Sum_probs=88.3
Q ss_pred CHHHHHhCCCCccccCCccccCCCCCCchHHHHHHHcCC--HHHHHHHHHHHHhCCCCCcc-cCCCCCcHHHHHHhcCCH
Q 001476 1 MTELLVSHHGQKQTLQSPARKSSLGGVQKDLCLAVREGS--LADVESALALLKKNGGNINS-RNIFGLTPLHSAIWRNQV 77 (1071)
Q Consensus 1 Ive~LLe~ga~~~~~~~~~~~~~~~~g~TpLh~Aa~~G~--~~~v~~iL~lLl~~Gadin~-~d~~G~TpLH~Aa~~g~~ 77 (1071)
|+++||++|++++.. +..|.||||+|+..++ .++++ +|+++|+++|. .|..|.|||| ||..++.
T Consensus 87 iv~lLL~~GAdin~~--------d~~g~TpLh~A~~~~~~~~e~v~----lLl~~Gadin~~~d~~g~tpL~-aa~~~~~ 153 (446)
T PHA02946 87 IVAMLLTHGADPNAC--------DKQHKTPLYYLSGTDDEVIERIN----LLVQYGAKINNSVDEEGCGPLL-ACTDPSE 153 (446)
T ss_pred HHHHHHHCcCCCCCC--------CCCCCCHHHHHHHcCCchHHHHH----HHHHcCCCcccccCCCCCcHHH-HHHCCCh
Confidence 578889888776532 2356688888877653 45555 77778888774 5677777776 5556777
Q ss_pred HHHHHHHhcCCCCCCCCCCCCcccccccccccc--ccchhhhhccccccccccCCCCCCcccCC
Q 001476 78 PIVRRLLAAGADPDARDGESGWSSLHRALHFGH--LAVASVLLQSGASITLEDCKSRTPVDLLS 139 (1071)
Q Consensus 78 eivk~LL~~GAd~~~~d~~~G~TpL~~A~~~G~--~~iv~lLl~~Ga~v~l~d~~G~tPLdl~s 139 (1071)
+++++|+++|++++.+| ..|+||||+|+..++ .+++++|+++|++++..|..|.||++++.
T Consensus 154 ~vv~~Ll~~gad~~~~d-~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa 216 (446)
T PHA02946 154 RVFKKIMSIGFEARIVD-KFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVC 216 (446)
T ss_pred HHHHHHHhccccccccC-CCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence 77777777777777777 677777777665443 46777777777777777777777777654
No 51
>PHA02884 ankyrin repeat protein; Provisional
Probab=99.40 E-value=6.3e-13 Score=149.08 Aligned_cols=110 Identities=16% Similarity=0.174 Sum_probs=94.8
Q ss_pred CHHHHHhCCCCccccCCccccCCCCCCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccC-CCCCcHHHHHHhcCCHHH
Q 001476 1 MTELLVSHHGQKQTLQSPARKSSLGGVQKDLCLAVREGSLADVESALALLKKNGGNINSRN-IFGLTPLHSAIWRNQVPI 79 (1071)
Q Consensus 1 Ive~LLe~ga~~~~~~~~~~~~~~~~g~TpLh~Aa~~G~~~~v~~iL~lLl~~Gadin~~d-~~G~TpLH~Aa~~g~~ei 79 (1071)
++++||++|++++.... .....|.||||+|+..++.++++ +|+++|+|+|.++ ..|.||||+|+..++.++
T Consensus 48 ivk~LL~~GAdiN~~~~----~sd~~g~TpLh~Aa~~~~~eivk----lLL~~GADVN~~~~~~g~TpLh~Aa~~~~~ei 119 (300)
T PHA02884 48 IIDAILKLGADPEAPFP----LSENSKTNPLIYAIDCDNDDAAK----LLIRYGADVNRYAEEAKITPLYISVLHGCLKC 119 (300)
T ss_pred HHHHHHHCCCCccccCc----ccCCCCCCHHHHHHHcCCHHHHH----HHHHcCCCcCcccCCCCCCHHHHHHHcCCHHH
Confidence 57999999998654211 01246789999999999999998 8999999999964 689999999999999999
Q ss_pred HHHHHhcCCCCCCCCCCCCccccccccccccccchhhhhc
Q 001476 80 VRRLLAAGADPDARDGESGWSSLHRALHFGHLAVASVLLQ 119 (1071)
Q Consensus 80 vk~LL~~GAd~~~~d~~~G~TpL~~A~~~G~~~iv~lLl~ 119 (1071)
+++|+++|++++.+| ..|+||||+|++.++..++.++..
T Consensus 120 vklLL~~GAdin~kd-~~G~TpL~~A~~~~~~~~~~~~~~ 158 (300)
T PHA02884 120 LEILLSYGADINIQT-NDMVTPIELALMICNNFLAFMICD 158 (300)
T ss_pred HHHHHHCCCCCCCCC-CCCCCHHHHHHHhCChhHHHHhcC
Confidence 999999999999999 889999999999888888766653
No 52
>PHA02876 ankyrin repeat protein; Provisional
Probab=99.39 E-value=3.7e-13 Score=168.17 Aligned_cols=108 Identities=20% Similarity=0.250 Sum_probs=66.2
Q ss_pred CCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCC-HHHHHHHHhcCCCCCCCCCCCCcccccc
Q 001476 26 GVQKDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQ-VPIVRRLLAAGADPDARDGESGWSSLHR 104 (1071)
Q Consensus 26 ~g~TpLh~Aa~~G~~~~v~~iL~lLl~~Gadin~~d~~G~TpLH~Aa~~g~-~eivk~LL~~GAd~~~~d~~~G~TpL~~ 104 (1071)
.|.||||+|+..|+.++++ +|+++|++++..+..|.||||+|+..++ ..++++|+++|++++.+| ..|+||||+
T Consensus 374 ~G~TpLh~Aa~~~~~~iv~----~Ll~~gad~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~gadin~~d-~~G~TpLh~ 448 (682)
T PHA02876 374 CDKTPIHYAAVRNNVVIIN----TLLDYGADIEALSQKIGTALHFALCGTNPYMSVKTLIDRGANVNSKN-KDLSTPLHY 448 (682)
T ss_pred CCCCHHHHHHHcCCHHHHH----HHHHCCCCccccCCCCCchHHHHHHcCCHHHHHHHHHhCCCCCCcCC-CCCChHHHH
Confidence 4556666666666665555 5555666666666666666666655443 345666666666666666 566666666
Q ss_pred ccccc-cccchhhhhccccccccccCCCCCCcccC
Q 001476 105 ALHFG-HLAVASVLLQSGASITLEDCKSRTPVDLL 138 (1071)
Q Consensus 105 A~~~G-~~~iv~lLl~~Ga~v~l~d~~G~tPLdl~ 138 (1071)
|+..+ +.+++++|+++|++++..+..|.+|+.++
T Consensus 449 Aa~~~~~~~iv~lLl~~Gad~n~~d~~g~tpl~~a 483 (682)
T PHA02876 449 ACKKNCKLDVIEMLLDNGADVNAINIQNQYPLLIA 483 (682)
T ss_pred HHHhCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence 66554 45666666666666666666666666553
No 53
>PHA02917 ankyrin-like protein; Provisional
Probab=99.37 E-value=6.4e-13 Score=164.27 Aligned_cols=131 Identities=13% Similarity=0.067 Sum_probs=96.7
Q ss_pred CHHHHHhCCCCccccCCccccCCCCCCchHHHHHHHcCCHHHHH-------------------------------HHHHH
Q 001476 1 MTELLVSHHGQKQTLQSPARKSSLGGVQKDLCLAVREGSLADVE-------------------------------SALAL 49 (1071)
Q Consensus 1 Ive~LLe~ga~~~~~~~~~~~~~~~~g~TpLh~Aa~~G~~~~v~-------------------------------~iL~l 49 (1071)
+|++||++|+++... +..|.||||+|+..|+.++++ +++++
T Consensus 50 ~v~~Ll~~ga~v~~~--------~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~~~~~~~~~a~~~~~~e~vk~ 121 (661)
T PHA02917 50 VVKLLLDSGTNPLHK--------NWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNINDFNIFSYMKSKNVDVDLIKV 121 (661)
T ss_pred HHHHHHHCCCCcccc--------CCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCCCcchHHHHHhhcCCHHHHHH
Confidence 478999988876422 356778899888877644322 33457
Q ss_pred HHhCCCCCcccCCCCCcHHHHHH--hcCCHHHHHHHHhcCCCCCCCCC--CCC-----------ccccccccc-------
Q 001476 50 LKKNGGNINSRNIFGLTPLHSAI--WRNQVPIVRRLLAAGADPDARDG--ESG-----------WSSLHRALH------- 107 (1071)
Q Consensus 50 Ll~~Gadin~~d~~G~TpLH~Aa--~~g~~eivk~LL~~GAd~~~~d~--~~G-----------~TpL~~A~~------- 107 (1071)
|+++|+|+|.+|..|+||||+|+ ..|+.+++++||++||+++..|. ..| +||||+|+.
T Consensus 122 Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~ 201 (661)
T PHA02917 122 LVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSES 201 (661)
T ss_pred HHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCccccccccccccccccccccccccHHHHHHhhcccccc
Confidence 77888888888888888888543 46788888888888888876541 234 488888864
Q ss_pred ----cccccchhhhhccccccccccCCCCCCcccCC
Q 001476 108 ----FGHLAVASVLLQSGASITLEDCKSRTPVDLLS 139 (1071)
Q Consensus 108 ----~G~~~iv~lLl~~Ga~v~l~d~~G~tPLdl~s 139 (1071)
.++.+++++|+++|++++..+..|.||+++..
T Consensus 202 ~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~ 237 (661)
T PHA02917 202 DTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYI 237 (661)
T ss_pred cccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHH
Confidence 45778888888888888888888888887643
No 54
>PHA02730 ankyrin-like protein; Provisional
Probab=99.36 E-value=6.1e-13 Score=161.58 Aligned_cols=125 Identities=18% Similarity=0.143 Sum_probs=106.8
Q ss_pred CHHHHHhCCCCccccCCccccCCCCCCchHHHHHHHcCC----HHHHHHHHHHHHhCCC--CCcccCCCCCcHHHH---H
Q 001476 1 MTELLVSHHGQKQTLQSPARKSSLGGVQKDLCLAVREGS----LADVESALALLKKNGG--NINSRNIFGLTPLHS---A 71 (1071)
Q Consensus 1 Ive~LLe~ga~~~~~~~~~~~~~~~~g~TpLh~Aa~~G~----~~~v~~iL~lLl~~Ga--din~~d~~G~TpLH~---A 71 (1071)
|+++||++|++.+.. ..|.||||+|+..++ .++++ +|+++|+ ++|.+|..|.||||. |
T Consensus 361 IvelLIs~GAdIN~k---------~~G~TpLH~Aa~~nnn~i~~eIve----lLIs~Ga~~dIN~kd~~G~T~Lh~~i~a 427 (672)
T PHA02730 361 ILRCMLDNGATMDKT---------TDNNYPLHDYFVNNNNIVDVNVVR----FIVENNGHMAINHVSNNGRLCMYGLILS 427 (672)
T ss_pred HHHHHHHCCCCCCcC---------CCCCcHHHHHHHHcCCcchHHHHH----HHHHcCCCccccccccCCCchHhHHHHH
Confidence 589999999986631 357899999998875 78888 9999998 699999999999994 3
Q ss_pred HhcC---------CHHHHHHHHhcCCCCCCCCCCCCccccccccccccccchhhhhccccccccccC-CCCCCcccCC
Q 001476 72 IWRN---------QVPIVRRLLAAGADPDARDGESGWSSLHRALHFGHLAVASVLLQSGASITLEDC-KSRTPVDLLS 139 (1071)
Q Consensus 72 a~~g---------~~eivk~LL~~GAd~~~~d~~~G~TpL~~A~~~G~~~iv~lLl~~Ga~v~l~d~-~G~tPLdl~s 139 (1071)
...+ ..+++++|+.+||+++.+| ..|+||||+|+..++.+++++|+++|++++..+. .|.+|++..+
T Consensus 428 ~~~n~~~~~~e~~~~~ivk~LIs~GADINakD-~~G~TPLh~Aa~~~~~eive~LI~~GAdIN~~d~~~g~TaL~~Aa 504 (672)
T PHA02730 428 RFNNCGYHCYETILIDVFDILSKYMDDIDMID-NENKTLLYYAVDVNNIQFARRLLEYGASVNTTSRSIINTAIQKSS 504 (672)
T ss_pred HhccccccccchhHHHHHHHHHhcccchhccC-CCCCCHHHHHHHhCCHHHHHHHHHCCCCCCCCCCcCCcCHHHHHH
Confidence 3332 2356999999999999999 8999999999999999999999999999999997 5899997754
No 55
>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]
Probab=99.36 E-value=6.6e-13 Score=166.81 Aligned_cols=106 Identities=36% Similarity=0.551 Sum_probs=58.1
Q ss_pred CchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCcccccccc
Q 001476 27 VQKDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRAL 106 (1071)
Q Consensus 27 g~TpLh~Aa~~G~~~~v~~iL~lLl~~Gadin~~d~~G~TpLH~Aa~~g~~eivk~LL~~GAd~~~~d~~~G~TpL~~A~ 106 (1071)
+.++||.|+..+....+. .++++|++++.++.+|.||||.||.+|+.++|++||++|||++.++ +.|+||||.|+
T Consensus 507 ~l~~lhla~~~~~v~~~~----~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~-~~G~TPLH~Aa 581 (1143)
T KOG4177|consen 507 GLTPLHLAADEDTVKVAK----ILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKD-KLGYTPLHQAA 581 (1143)
T ss_pred ccchhhhhhhhhhHHHHH----HHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhCCccccccC-CCCCChhhHHH
Confidence 445555555555555444 4445555555555555555555555555555555555555555555 55555555555
Q ss_pred ccccccchhhhhccccccccccCCCCCCccc
Q 001476 107 HFGHLAVASVLLQSGASITLEDCKSRTPVDL 137 (1071)
Q Consensus 107 ~~G~~~iv~lLl~~Ga~v~l~d~~G~tPLdl 137 (1071)
..|+.+|+.+|+++|+++|..+.+|.||+..
T Consensus 582 ~~G~~~i~~LLlk~GA~vna~d~~g~TpL~i 612 (1143)
T KOG4177|consen 582 QQGHNDIAELLLKHGASVNAADLDGFTPLHI 612 (1143)
T ss_pred HcChHHHHHHHHHcCCCCCcccccCcchhHH
Confidence 5555555555555555555555555555533
No 56
>PHA02989 ankyrin repeat protein; Provisional
Probab=99.35 E-value=1.2e-12 Score=157.47 Aligned_cols=124 Identities=25% Similarity=0.406 Sum_probs=105.0
Q ss_pred CHHHHHhCCCCccccCCccccCCCCCCchHHHHHHH------cCCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhc
Q 001476 1 MTELLVSHHGQKQTLQSPARKSSLGGVQKDLCLAVR------EGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWR 74 (1071)
Q Consensus 1 Ive~LLe~ga~~~~~~~~~~~~~~~~g~TpLh~Aa~------~G~~~~v~~iL~lLl~~Gadin~~d~~G~TpLH~Aa~~ 74 (1071)
||++||++|++++.. + .+.||||.|+. .++.++++ +|+++|+|+|.+|..|.||||.|+..
T Consensus 52 iv~~Ll~~GAdvn~~-~--------~~~tpL~~a~~~~~~~~~~~~~iv~----~Ll~~Gadin~~d~~g~tpL~~a~~~ 118 (494)
T PHA02989 52 IVKLLIDNGADVNYK-G--------YIETPLCAVLRNREITSNKIKKIVK----LLLKFGADINLKTFNGVSPIVCFIYN 118 (494)
T ss_pred HHHHHHHcCCCccCC-C--------CCCCcHHHHHhccCcchhhHHHHHH----HHHHCCCCCCCCCCCCCcHHHHHHHh
Confidence 589999999886632 1 24689999875 35566666 99999999999999999999988765
Q ss_pred ---CCHHHHHHHHhcCCCC-CCCCCCCCccccccccc--cccccchhhhhcccccccc-ccCCCCCCcccC
Q 001476 75 ---NQVPIVRRLLAAGADP-DARDGESGWSSLHRALH--FGHLAVASVLLQSGASITL-EDCKSRTPVDLL 138 (1071)
Q Consensus 75 ---g~~eivk~LL~~GAd~-~~~d~~~G~TpL~~A~~--~G~~~iv~lLl~~Ga~v~l-~d~~G~tPLdl~ 138 (1071)
++.+++++|+++|||+ +.+| ..|+||||+|+. .++.+++++|+++|++++. .+..|.+|+++.
T Consensus 119 ~~~~~~eiv~~Ll~~Gadin~~~d-~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a 188 (494)
T PHA02989 119 SNINNCDMLRFLLSKGINVNDVKN-SRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIY 188 (494)
T ss_pred cccCcHHHHHHHHHCCCCcccccC-CCCCCHHHHHHHhccCCHHHHHHHHHcCCCccccccccCCChHHHH
Confidence 6899999999999999 7888 889999999865 4688999999999999988 677899998754
No 57
>KOG0510 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.35 E-value=8.9e-13 Score=156.94 Aligned_cols=110 Identities=31% Similarity=0.330 Sum_probs=73.5
Q ss_pred CCCCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHh-cC-CCCCCCCCCCCccc
Q 001476 24 LGGVQKDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLA-AG-ADPDARDGESGWSS 101 (1071)
Q Consensus 24 ~~~g~TpLh~Aa~~G~~~~v~~iL~lLl~~Gadin~~d~~G~TpLH~Aa~~g~~eivk~LL~-~G-Ad~~~~d~~~G~Tp 101 (1071)
+++|.||||+||+.|+.+.++ .|+..|+++|.++.++.||||.||.+|++.+|+.||+ .| ..++..| ..|.||
T Consensus 270 d~dg~tpLH~a~r~G~~~svd----~Ll~~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D-~~g~tp 344 (929)
T KOG0510|consen 270 DNDGCTPLHYAARQGGPESVD----NLLGFGASINSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESD-LHGMTP 344 (929)
T ss_pred cccCCchHHHHHHcCChhHHH----HHHHcCCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCcccccccc-ccCCCc
Confidence 345667777777777777666 6666777777777777777777777777777777776 33 4555556 667777
Q ss_pred cccccccccccchhhhhccccccc---cccCCCCCCcccC
Q 001476 102 LHRALHFGHLAVASVLLQSGASIT---LEDCKSRTPVDLL 138 (1071)
Q Consensus 102 L~~A~~~G~~~iv~lLl~~Ga~v~---l~d~~G~tPLdl~ 138 (1071)
||+|++.||..++++|++.|+... ..|..|.|+++++
T Consensus 345 LHlaa~~gH~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~A 384 (929)
T KOG0510|consen 345 LHLAAKSGHDRVVQLLLNKGALFLNMSEADSDGNTALHLA 384 (929)
T ss_pred hhhhhhcCHHHHHHHHHhcChhhhcccccccCCchhhhHH
Confidence 777777777777777777776655 2366667776663
No 58
>KOG0510 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.34 E-value=9.7e-13 Score=156.61 Aligned_cols=112 Identities=27% Similarity=0.369 Sum_probs=101.1
Q ss_pred CCCCCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCC---CCCCCCCc
Q 001476 23 SLGGVQKDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPD---ARDGESGW 99 (1071)
Q Consensus 23 ~~~~g~TpLh~Aa~~G~~~~v~~iL~lLl~~Gadin~~d~~G~TpLH~Aa~~g~~eivk~LL~~GAd~~---~~d~~~G~ 99 (1071)
.+.++.||||.||..|++.+++.+|+ ...-..+|..|..|+||||+|+..||.+++++||+.||+.. ..| .+|.
T Consensus 302 kn~d~~spLH~AA~yg~~ntv~rLL~--~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~~~~e~D-~dg~ 378 (929)
T KOG0510|consen 302 KNKDEESPLHFAAIYGRINTVERLLQ--ESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALFLNMSEAD-SDGN 378 (929)
T ss_pred cCCCCCCchHHHHHcccHHHHHHHHh--CcCccccccccccCCCchhhhhhcCHHHHHHHHHhcChhhhcccccc-cCCc
Confidence 45689999999999999999995443 23346789999999999999999999999999999999887 457 8899
Q ss_pred cccccccccccccchhhhhccccccccccCCCCCCccc
Q 001476 100 SSLHRALHFGHLAVASVLLQSGASITLEDCKSRTPVDL 137 (1071)
Q Consensus 100 TpL~~A~~~G~~~iv~lLl~~Ga~v~l~d~~G~tPLdl 137 (1071)
||||.|+..|+..++++|+.+|+++..++..|.+++++
T Consensus 379 TaLH~Aa~~g~~~av~~Li~~Ga~I~~~n~~g~SA~~~ 416 (929)
T KOG0510|consen 379 TALHLAAKYGNTSAVQKLISHGADIGVKNKKGKSAFDT 416 (929)
T ss_pred hhhhHHHHhccHHHHHHHHHcCCceeeccccccccccc
Confidence 99999999999999999999999999999999999986
No 59
>PHA02736 Viral ankyrin protein; Provisional
Probab=99.34 E-value=3.7e-13 Score=136.66 Aligned_cols=116 Identities=18% Similarity=0.172 Sum_probs=91.8
Q ss_pred CCCCchHHHHHHHcCCHHHHHHHHHHHHh-CCCCCcccCCCCCcHHHHHHhcCCHH---HHHHHHhcCCCCCCCCCCCCc
Q 001476 24 LGGVQKDLCLAVREGSLADVESALALLKK-NGGNINSRNIFGLTPLHSAIWRNQVP---IVRRLLAAGADPDARDGESGW 99 (1071)
Q Consensus 24 ~~~g~TpLh~Aa~~G~~~~v~~iL~lLl~-~Gadin~~d~~G~TpLH~Aa~~g~~e---ivk~LL~~GAd~~~~d~~~G~ 99 (1071)
+..|.||||+||+.|+...+-.....+.. .+..++.+|..|.||||+||..++.+ ++++|+++|++++.++...|+
T Consensus 14 d~~g~tpLh~A~~~g~~~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~~~g~ 93 (154)
T PHA02736 14 DIEGENILHYLCRNGGVTDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKERVFGN 93 (154)
T ss_pred CCCCCCHHHHHHHhCCHHHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCccccCCCCCC
Confidence 45789999999999984222100000000 11124467899999999999999874 689999999999999845899
Q ss_pred cccccccccccccchhhhhc-cccccccccCCCCCCcccCC
Q 001476 100 SSLHRALHFGHLAVASVLLQ-SGASITLEDCKSRTPVDLLS 139 (1071)
Q Consensus 100 TpL~~A~~~G~~~iv~lLl~-~Ga~v~l~d~~G~tPLdl~s 139 (1071)
||||+|+..++.+++++|+. .|++++..+..|.||++++.
T Consensus 94 T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~ 134 (154)
T PHA02736 94 TPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVAC 134 (154)
T ss_pred cHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHH
Confidence 99999999999999999997 59999999999999998754
No 60
>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]
Probab=99.33 E-value=1e-12 Score=165.13 Aligned_cols=125 Identities=30% Similarity=0.435 Sum_probs=111.8
Q ss_pred HHHHHhCCCCccccCCccccCCCCCCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHH
Q 001476 2 TELLVSHHGQKQTLQSPARKSSLGGVQKDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVR 81 (1071)
Q Consensus 2 ve~LLe~ga~~~~~~~~~~~~~~~~g~TpLh~Aa~~G~~~~v~~iL~lLl~~Gadin~~d~~G~TpLH~Aa~~g~~eivk 81 (1071)
++.|+++|+..... ...+.||||.||..|+...|+ +|+++|+|++.++..|+||||.||..|+.+|+.
T Consensus 523 ~~~l~~~ga~v~~~--------~~r~~TpLh~A~~~g~v~~Vk----fLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~ 590 (1143)
T KOG4177|consen 523 AKILLEHGANVDLR--------TGRGYTPLHVAVHYGNVDLVK----FLLEHGADVNAKDKLGYTPLHQAAQQGHNDIAE 590 (1143)
T ss_pred HHHHhhcCCceehh--------cccccchHHHHHhcCCchHHH----HhhhCCccccccCCCCCChhhHHHHcChHHHHH
Confidence 45677777664422 356789999999999999999 999999999999999999999999999999999
Q ss_pred HHHhcCCCCCCCCCCCCccccccccccccccchhhhhccccc-----cccccCCCCCCcccCC
Q 001476 82 RLLAAGADPDARDGESGWSSLHRALHFGHLAVASVLLQSGAS-----ITLEDCKSRTPVDLLS 139 (1071)
Q Consensus 82 ~LL~~GAd~~~~d~~~G~TpL~~A~~~G~~~iv~lLl~~Ga~-----v~l~d~~G~tPLdl~s 139 (1071)
+|+++||++|..| .+|.|||++|.+.|+.+++++|+..++. ....+..|.+|.++..
T Consensus 591 LLlk~GA~vna~d-~~g~TpL~iA~~lg~~~~~k~l~~~~~~~~~~~~~~e~~~g~~p~~v~e 652 (1143)
T KOG4177|consen 591 LLLKHGASVNAAD-LDGFTPLHIAVRLGYLSVVKLLKVVTATPAATDPVKENRKGAVPEDVAE 652 (1143)
T ss_pred HHHHcCCCCCccc-ccCcchhHHHHHhcccchhhHHHhccCccccccchhhhhcccChhhHHH
Confidence 9999999999999 8999999999999999999999999988 7777788888887743
No 61
>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.33 E-value=1.3e-12 Score=150.51 Aligned_cols=127 Identities=28% Similarity=0.411 Sum_probs=111.7
Q ss_pred CHHHHHhCCCCccccCCccccCCCCCCchHHHHHHHcCCHHHHHHHHHHHHhCCCC------------------------
Q 001476 1 MTELLVSHHGQKQTLQSPARKSSLGGVQKDLCLAVREGSLADVESALALLKKNGGN------------------------ 56 (1071)
Q Consensus 1 Ive~LLe~ga~~~~~~~~~~~~~~~~g~TpLh~Aa~~G~~~~v~~iL~lLl~~Gad------------------------ 56 (1071)
||+||+++|++++.. .+.+|||||.|+.+|+..++. +|+.+|++
T Consensus 88 ~v~~l~e~ga~Vn~~--------d~e~wtPlhaaascg~~~i~~----~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l 155 (527)
T KOG0505|consen 88 MVKFLVENGANVNAQ--------DNEGWTPLHAAASCGYLNIVE----YLIQHGANLLAVNSDGNMPYDLAEDEATLDVL 155 (527)
T ss_pred HHHHHHHhcCCcccc--------ccccCCcchhhcccccHHHHH----HHHHhhhhhhhccCCCCCccccccCcchhHHH
Confidence 689999999987653 467889999999999999998 44444443
Q ss_pred -----------------------------------CcccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCccc
Q 001476 57 -----------------------------------INSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSS 101 (1071)
Q Consensus 57 -----------------------------------in~~d~~G~TpLH~Aa~~g~~eivk~LL~~GAd~~~~d~~~G~Tp 101 (1071)
.+.++..|-|+||.|+.+|..+..++||.+|.+++++| .+||||
T Consensus 156 ~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~~~D-~dgWtP 234 (527)
T KOG0505|consen 156 ETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHVAAANGYTEVAALLLQAGYSVNIKD-YDGWTP 234 (527)
T ss_pred HHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHHHHhhhHHHHHHHHHHhccCccccc-ccCCCc
Confidence 34455568899999999999999999999999999999 899999
Q ss_pred cccccccccccchhhhhccccccccccCCCCCCcccCCC
Q 001476 102 LHRALHFGHLAVASVLLQSGASITLEDCKSRTPVDLLSG 140 (1071)
Q Consensus 102 L~~A~~~G~~~iv~lLl~~Ga~v~l~d~~G~tPLdl~sg 140 (1071)
||.|++.|+.+++++|+.+|++++.....|.+|+++.--
T Consensus 235 lHAAA~Wg~~~~~elL~~~ga~~d~~t~~g~~p~dv~de 273 (527)
T KOG0505|consen 235 LHAAAHWGQEDACELLVEHGADMDAKTKMGETPLDVADE 273 (527)
T ss_pred ccHHHHhhhHhHHHHHHHhhcccchhhhcCCCCccchhh
Confidence 999999999999999999999999999999999988654
No 62
>PHA02876 ankyrin repeat protein; Provisional
Probab=99.31 E-value=2.5e-12 Score=160.79 Aligned_cols=124 Identities=27% Similarity=0.306 Sum_probs=89.4
Q ss_pred HHHHHhCCCCccccCCccccCCCCCCchHHHHHHHcCCHH-HHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcC-CHHH
Q 001476 2 TELLVSHHGQKQTLQSPARKSSLGGVQKDLCLAVREGSLA-DVESALALLKKNGGNINSRNIFGLTPLHSAIWRN-QVPI 79 (1071)
Q Consensus 2 ve~LLe~ga~~~~~~~~~~~~~~~~g~TpLh~Aa~~G~~~-~v~~iL~lLl~~Gadin~~d~~G~TpLH~Aa~~g-~~ei 79 (1071)
+++|+++|.+.... +..|.||||+|+..++.. +++ +|++.|+++|.+|..|.||||+|+..| +.++
T Consensus 256 ~~~Ll~~g~~vn~~--------d~~g~TpLh~Aa~~~~~~~iv~----lLl~~gadin~~d~~g~TpLh~Aa~~g~~~~~ 323 (682)
T PHA02876 256 SLLLYDAGFSVNSI--------DDCKNTPLHHASQAPSLSRLVP----KLLERGADVNAKNIKGETPLYLMAKNGYDTEN 323 (682)
T ss_pred HHHHHHCCCCCCCC--------CCCCCCHHHHHHhCCCHHHHHH----HHHHCCCCCCCcCCCCCCHHHHHHHhCCCHHH
Confidence 46777766654422 235667888888877753 344 677788888888888888888888777 4777
Q ss_pred HHHHHhcCCCCCCCCCCCCcccccccccc-ccccchhhhhccccccccccCCCCCCcccC
Q 001476 80 VRRLLAAGADPDARDGESGWSSLHRALHF-GHLAVASVLLQSGASITLEDCKSRTPVDLL 138 (1071)
Q Consensus 80 vk~LL~~GAd~~~~d~~~G~TpL~~A~~~-G~~~iv~lLl~~Ga~v~l~d~~G~tPLdl~ 138 (1071)
+++|+..|++++..| ..|+||||+|+.. ++.+++.+|+++|++++.++..|.||++++
T Consensus 324 v~~Ll~~gadin~~d-~~g~TpLh~A~~~~~~~~iv~lLl~~gadin~~d~~G~TpLh~A 382 (682)
T PHA02876 324 IRTLIMLGADVNAAD-RLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYA 382 (682)
T ss_pred HHHHHHcCCCCCCcc-cCCCcHHHHHHHhCCcHHHHHHHHHcCCCCccCCCCCCCHHHHH
Confidence 777777788777777 6777888777764 356677777777777777777777777765
No 63
>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]
Probab=99.27 E-value=1.4e-12 Score=134.90 Aligned_cols=122 Identities=29% Similarity=0.371 Sum_probs=109.7
Q ss_pred CHHHHHhCCCCccccCCccccCCCCCCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHH
Q 001476 1 MTELLVSHHGQKQTLQSPARKSSLGGVQKDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIV 80 (1071)
Q Consensus 1 Ive~LLe~ga~~~~~~~~~~~~~~~~g~TpLh~Aa~~G~~~~v~~iL~lLl~~Gadin~~d~~G~TpLH~Aa~~g~~eiv 80 (1071)
+|+|||..|+++..+.. ...|+|.+|++.|..++|+ +|++++.|+|..|-+|-|||.||++.||.+||
T Consensus 175 vV~fLL~~GAdp~~lgk--------~resALsLAt~ggytdiV~----lLL~r~vdVNvyDwNGgTpLlyAvrgnhvkcv 242 (296)
T KOG0502|consen 175 VVQFLLNSGADPDALGK--------YRESALSLATRGGYTDIVE----LLLTREVDVNVYDWNGGTPLLYAVRGNHVKCV 242 (296)
T ss_pred HHHHHHHcCCChhhhhh--------hhhhhHhHHhcCChHHHHH----HHHhcCCCcceeccCCCceeeeeecCChHHHH
Confidence 48999999998776532 2357899999999999999 99999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCCCCCCccccccccccccccchhhhhccccccccccCCCCCCcc
Q 001476 81 RRLLAAGADPDARDGESGWSSLHRALHFGHLAVASVLLQSGASITLEDCKSRTPVD 136 (1071)
Q Consensus 81 k~LL~~GAd~~~~d~~~G~TpL~~A~~~G~~~iv~lLl~~Ga~v~l~d~~G~tPLd 136 (1071)
+.||..||+++..+ ..|++++++|...|.. +++..++..+...+.++..++|++
T Consensus 243 e~Ll~sGAd~t~e~-dsGy~~mdlAValGyr-~Vqqvie~h~lkl~Q~~~~~~~~~ 296 (296)
T KOG0502|consen 243 ESLLNSGADVTQED-DSGYWIMDLAVALGYR-IVQQVIEKHALKLCQDSEKRTPLH 296 (296)
T ss_pred HHHHhcCCCccccc-ccCCcHHHHHHHhhhH-HHHHHHHHHHHHHhhcccCCCCCC
Confidence 99999999999999 8999999999999987 888888888888888888887763
No 64
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=99.26 E-value=5e-12 Score=161.01 Aligned_cols=109 Identities=26% Similarity=0.285 Sum_probs=96.5
Q ss_pred CCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCccccccc
Q 001476 26 GVQKDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRA 105 (1071)
Q Consensus 26 ~g~TpLh~Aa~~G~~~~v~~iL~lLl~~Gadin~~d~~G~TpLH~Aa~~g~~eivk~LL~~GAd~~~~d~~~G~TpL~~A 105 (1071)
+..++||.||..|+.+.++ .|++.|+|+|.+|..|+||||+||..|+.+++++|+++|++++.+| .+|+||||+|
T Consensus 524 ~~~~~L~~Aa~~g~~~~l~----~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d-~~G~TpL~~A 598 (823)
T PLN03192 524 NMASNLLTVASTGNAALLE----ELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRD-ANGNTALWNA 598 (823)
T ss_pred cchhHHHHHHHcCCHHHHH----HHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcC-CCCCCHHHHH
Confidence 4568899999999999888 7888999999999999999999999999999999999999999999 8899999866
Q ss_pred ccccc-------------------------------ccchhhhhccccccccccCCCCCCcccCC
Q 001476 106 LHFGH-------------------------------LAVASVLLQSGASITLEDCKSRTPVDLLS 139 (1071)
Q Consensus 106 ~~~G~-------------------------------~~iv~lLl~~Ga~v~l~d~~G~tPLdl~s 139 (1071)
+..|+ .+++++|+++|++++..|..|.||++++.
T Consensus 599 ~~~g~~~iv~~L~~~~~~~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~ 663 (823)
T PLN03192 599 ISAKHHKIFRILYHFASISDPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAM 663 (823)
T ss_pred HHhCCHHHHHHHHhcCcccCcccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Confidence 55554 55566677889999999999999998743
No 65
>PHA02917 ankyrin-like protein; Provisional
Probab=99.25 E-value=7.8e-12 Score=154.70 Aligned_cols=121 Identities=20% Similarity=0.239 Sum_probs=97.8
Q ss_pred CHHHHHhCCCCccccCCccccCCCCCCchHHHHHH--HcCCHHHHHHHHHHHHhCCCCCcccCC---CC-----------
Q 001476 1 MTELLVSHHGQKQTLQSPARKSSLGGVQKDLCLAV--REGSLADVESALALLKKNGGNINSRNI---FG----------- 64 (1071)
Q Consensus 1 Ive~LLe~ga~~~~~~~~~~~~~~~~g~TpLh~Aa--~~G~~~~v~~iL~lLl~~Gadin~~d~---~G----------- 64 (1071)
||++||++|++.+.. +..|.||||.++ ..|+.++++ +|+++|+|+|.+|. .|
T Consensus 118 ~vk~Ll~~Gadin~~--------d~~g~T~L~~~~a~~~~~~eivk----lLi~~Ga~vn~~d~~~~~g~~~~~~~~~~~ 185 (661)
T PHA02917 118 LIKVLVEHGFDLSVK--------CENHRSVIENYVMTDDPVPEIID----LFIENGCSVLYEDEDDEYGYAYDDYQPRNC 185 (661)
T ss_pred HHHHHHHcCCCCCcc--------CCCCccHHHHHHHccCCCHHHHH----HHHHcCCCcccccccccccccccccccccc
Confidence 579999988886633 346789999654 468999999 99999999987653 34
Q ss_pred CcHHHHHHh-----------cCCHHHHHHHHhcCCCCCCCCCCCCccccccccccccc--cchhhhhcccccccc----c
Q 001476 65 LTPLHSAIW-----------RNQVPIVRRLLAAGADPDARDGESGWSSLHRALHFGHL--AVASVLLQSGASITL----E 127 (1071)
Q Consensus 65 ~TpLH~Aa~-----------~g~~eivk~LL~~GAd~~~~d~~~G~TpL~~A~~~G~~--~iv~lLl~~Ga~v~l----~ 127 (1071)
.||||+|+. +++.+++++|+++|+|++.+| .+|+||||+|++.|+. +++++|++ |++++. .
T Consensus 186 ~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d-~~G~TpLh~A~~~g~~~~eivk~Li~-g~d~~~~~~~~ 263 (661)
T PHA02917 186 GTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSID-KNYCTALQYYIKSSHIDIDIVKLLMK-GIDNTAYSYID 263 (661)
T ss_pred ccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCC-CCCCcHHHHHHHcCCCcHHHHHHHHh-CCccccccccc
Confidence 599999986 568999999999999999999 8999999999999986 69999985 877653 3
Q ss_pred cCCCCCCc
Q 001476 128 DCKSRTPV 135 (1071)
Q Consensus 128 d~~G~tPL 135 (1071)
+..+.++.
T Consensus 264 ~~~~~~~~ 271 (661)
T PHA02917 264 DLTCCTRG 271 (661)
T ss_pred Ccccccch
Confidence 44455544
No 66
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=99.23 E-value=2.3e-11 Score=111.72 Aligned_cols=78 Identities=33% Similarity=0.440 Sum_probs=67.1
Q ss_pred CHHHHHhCCCCccccCCccccCCCCCCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHH
Q 001476 1 MTELLVSHHGQKQTLQSPARKSSLGGVQKDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIV 80 (1071)
Q Consensus 1 Ive~LLe~ga~~~~~~~~~~~~~~~~g~TpLh~Aa~~G~~~~v~~iL~lLl~~Gadin~~d~~G~TpLH~Aa~~g~~eiv 80 (1071)
++++|++.+.+... |+||||+|+..|+.++++ +|+++|+++|.+|..|+||||+|+..++.+++
T Consensus 12 ~~~~ll~~~~~~~~------------~~~~l~~A~~~~~~~~~~----~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~ 75 (89)
T PF12796_consen 12 ILKFLLEKGADINL------------GNTALHYAAENGNLEIVK----LLLENGADINSQDKNGNTALHYAAENGNLEIV 75 (89)
T ss_dssp HHHHHHHTTSTTTS------------SSBHHHHHHHTTTHHHHH----HHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHH
T ss_pred HHHHHHHCcCCCCC------------CCCHHHHHHHcCCHHHHH----HHHHhcccccccCCCCCCHHHHHHHcCCHHHH
Confidence 47889996644331 568999999999999999 88899999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCC
Q 001476 81 RRLLAAGADPDARD 94 (1071)
Q Consensus 81 k~LL~~GAd~~~~d 94 (1071)
++|+++|++++.+|
T Consensus 76 ~~Ll~~g~~~~~~n 89 (89)
T PF12796_consen 76 KLLLEHGADVNIRN 89 (89)
T ss_dssp HHHHHTTT-TTSS-
T ss_pred HHHHHcCCCCCCcC
Confidence 99999999999876
No 67
>KOG0514 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.23 E-value=9.4e-12 Score=137.02 Aligned_cols=91 Identities=32% Similarity=0.334 Sum_probs=85.5
Q ss_pred CCCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHhc-CCCCCCCCCCCCccccc
Q 001476 25 GGVQKDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAA-GADPDARDGESGWSSLH 103 (1071)
Q Consensus 25 ~~g~TpLh~Aa~~G~~~~v~~iL~lLl~~Gadin~~d~~G~TpLH~Aa~~g~~eivk~LL~~-GAd~~~~d~~~G~TpL~ 103 (1071)
..|+|+|++|+.+|+.++|+ .|+.+|+|||.+|.+|.|+||.||..||.+|+++||.. ++|+...| .+|-|+|.
T Consensus 338 Q~gQTALMLAVSHGr~d~vk----~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD-~DgSTAl~ 412 (452)
T KOG0514|consen 338 QHGQTALMLAVSHGRVDMVK----ALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTD-VDGSTALS 412 (452)
T ss_pred hhcchhhhhhhhcCcHHHHH----HHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhccCcccceeec-CCCchhhh
Confidence 35899999999999999999 88899999999999999999999999999999999986 79999999 89999999
Q ss_pred cccccccccchhhhhcc
Q 001476 104 RALHFGHLAVASVLLQS 120 (1071)
Q Consensus 104 ~A~~~G~~~iv~lLl~~ 120 (1071)
+|...||.+|.-+|..+
T Consensus 413 IAleagh~eIa~mlYa~ 429 (452)
T KOG0514|consen 413 IALEAGHREIAVMLYAH 429 (452)
T ss_pred hHHhcCchHHHHHHHHH
Confidence 99999999999888754
No 68
>PHA02792 ankyrin-like protein; Provisional
Probab=99.23 E-value=1e-11 Score=149.54 Aligned_cols=124 Identities=15% Similarity=0.128 Sum_probs=108.2
Q ss_pred CHHHHHhCCCCccccCCccccCCCCCCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCC--CcHHHHHHhcCCH-
Q 001476 1 MTELLVSHHGQKQTLQSPARKSSLGGVQKDLCLAVREGSLADVESALALLKKNGGNINSRNIFG--LTPLHSAIWRNQV- 77 (1071)
Q Consensus 1 Ive~LLe~ga~~~~~~~~~~~~~~~~g~TpLh~Aa~~G~~~~v~~iL~lLl~~Gadin~~d~~G--~TpLH~Aa~~g~~- 77 (1071)
++++||++|++... . .....+|.||..|+.++++ +|+++|||+|.+|..| .||||+|+.....
T Consensus 323 iIK~LId~Ga~~~r--~--------~~~n~~~~Aa~~gn~eIVe----lLIs~GADIN~kD~~g~~~TpLh~A~~n~~~~ 388 (631)
T PHA02792 323 VIKCMIDEGATLYR--F--------KHINKYFQKFDNRDPKVVE----YILKNGNVVVEDDDNIINIMPLFPTLSIHESD 388 (631)
T ss_pred HHHHHHHCCCcccc--C--------CcchHHHHHHHcCCHHHHH----HHHHcCCchhhhcCCCCChhHHHHHHHhccHh
Confidence 57999999998541 1 1234599999999999999 8999999999999775 6999998877654
Q ss_pred --HHHHHHHhcCCCCCCCCCCCCccccccccccccccchhhhhccccccccccCCCCCCcccCC
Q 001476 78 --PIVRRLLAAGADPDARDGESGWSSLHRALHFGHLAVASVLLQSGASITLEDCKSRTPVDLLS 139 (1071)
Q Consensus 78 --eivk~LL~~GAd~~~~d~~~G~TpL~~A~~~G~~~iv~lLl~~Ga~v~l~d~~G~tPLdl~s 139 (1071)
+++++|+++||+++.+| ..|+||||+|+..++.+++++|+++|++++..+..|.||++++.
T Consensus 389 v~~IlklLIs~GADIN~kD-~~G~TPLh~Aa~~~n~eivelLLs~GADIN~kD~~G~TpL~~A~ 451 (631)
T PHA02792 389 VLSILKLCKPYIDDINKID-KHGRSILYYCIESHSVSLVEWLIDNGADINITTKYGSTCIGICV 451 (631)
T ss_pred HHHHHHHHHhcCCcccccc-ccCcchHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHH
Confidence 46899999999999999 88999999999999999999999999999999999999998754
No 69
>KOG4214 consensus Myotrophin and similar proteins [Transcription]
Probab=99.19 E-value=1.2e-11 Score=112.44 Aligned_cols=101 Identities=29% Similarity=0.391 Sum_probs=85.7
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCcccccccccc
Q 001476 29 KDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRALHF 108 (1071)
Q Consensus 29 TpLh~Aa~~G~~~~v~~iL~lLl~~Gadin~~d~~G~TpLH~Aa~~g~~eivk~LL~~GAd~~~~d~~~G~TpL~~A~~~ 108 (1071)
..+.++..+|.++-|+. ....|.|+|..- .|+||||||+-+|.++++++|+..||+++.+| .+|.|||--|...
T Consensus 4 ~~~~W~vkNG~~DeVk~----~v~~g~nVn~~~-ggR~plhyAAD~GQl~ilefli~iGA~i~~kD-KygITPLLsAvwE 77 (117)
T KOG4214|consen 4 MSVAWNVKNGEIDEVKQ----SVNEGLNVNEIY-GGRTPLHYAADYGQLSILEFLISIGANIQDKD-KYGITPLLSAVWE 77 (117)
T ss_pred hhHhhhhccCcHHHHHH----HHHccccHHHHh-CCcccchHhhhcchHHHHHHHHHhccccCCcc-ccCCcHHHHHHHH
Confidence 34788899999998884 334678887665 78999999999999999999999999999999 8999999999999
Q ss_pred ccccchhhhhccccccccccCCCCCCc
Q 001476 109 GHLAVASVLLQSGASITLEDCKSRTPV 135 (1071)
Q Consensus 109 G~~~iv~lLl~~Ga~v~l~d~~G~tPL 135 (1071)
||.+|+++|++.|++-..+..+|.+.+
T Consensus 78 GH~~cVklLL~~GAdrt~~~PdG~~~~ 104 (117)
T KOG4214|consen 78 GHRDCVKLLLQNGADRTIHAPDGTALI 104 (117)
T ss_pred hhHHHHHHHHHcCcccceeCCCchhHH
Confidence 999999999999998877777776544
No 70
>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]
Probab=99.19 E-value=1.7e-11 Score=130.98 Aligned_cols=112 Identities=24% Similarity=0.292 Sum_probs=90.9
Q ss_pred CHHHHHhCCCCccccCCccccCCCCCCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHH
Q 001476 1 MTELLVSHHGQKQTLQSPARKSSLGGVQKDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIV 80 (1071)
Q Consensus 1 Ive~LLe~ga~~~~~~~~~~~~~~~~g~TpLh~Aa~~G~~~~v~~iL~lLl~~Gadin~~d~~G~TpLH~Aa~~g~~eiv 80 (1071)
|+|.||.+|+.++.. +.+..||||+||.+|+.++|+ .|++..+|+|+.+..|+|||||||..|.-.++
T Consensus 49 ivemll~rgarvn~t--------nmgddtplhlaaahghrdivq----kll~~kadvnavnehgntplhyacfwgydqia 116 (448)
T KOG0195|consen 49 IVEMLLSRGARVNST--------NMGDDTPLHLAAAHGHRDIVQ----KLLSRKADVNAVNEHGNTPLHYACFWGYDQIA 116 (448)
T ss_pred HHHHHHhcccccccc--------cCCCCcchhhhhhcccHHHHH----HHHHHhcccchhhccCCCchhhhhhhcHHHHH
Confidence 579999988775532 233468999999999999999 78889999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCCCCCCccccccccccccccchhhhhccccccc
Q 001476 81 RRLLAAGADPDARDGESGWSSLHRALHFGHLAVASVLLQSGASIT 125 (1071)
Q Consensus 81 k~LL~~GAd~~~~d~~~G~TpL~~A~~~G~~~iv~lLl~~Ga~v~ 125 (1071)
+-|+..||.+++.+ ++|.|||+.|.-.-...+.++--++|.+++
T Consensus 117 edli~~ga~v~icn-k~g~tpldkakp~l~~~l~e~aek~gq~~n 160 (448)
T KOG0195|consen 117 EDLISCGAAVNICN-KKGMTPLDKAKPMLKNTLLEIAEKHGQSPN 160 (448)
T ss_pred HHHHhccceeeecc-cCCCCchhhhchHHHHHHHHHHHHhCCCCC
Confidence 99999999999999 999999999854333333333334555554
No 71
>PHA02792 ankyrin-like protein; Provisional
Probab=99.18 E-value=3.1e-11 Score=145.50 Aligned_cols=117 Identities=18% Similarity=0.101 Sum_probs=96.1
Q ss_pred CHHHHHhCCCCccccCCccccCCCCCCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHH
Q 001476 1 MTELLVSHHGQKQTLQSPARKSSLGGVQKDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIV 80 (1071)
Q Consensus 1 Ive~LLe~ga~~~~~~~~~~~~~~~~g~TpLh~Aa~~G~~~~v~~iL~lLl~~Gadin~~d~~G~TpLH~Aa~~g~~eiv 80 (1071)
++++|+++|++...... .+.+.||||.|+.....+ +..++++|+++|+|+|.+|..|.||||+|+..++.+++
T Consensus 354 IVelLIs~GADIN~kD~------~g~~~TpLh~A~~n~~~~-v~~IlklLIs~GADIN~kD~~G~TPLh~Aa~~~n~eiv 426 (631)
T PHA02792 354 VVEYILKNGNVVVEDDD------NIINIMPLFPTLSIHESD-VLSILKLCKPYIDDINKIDKHGRSILYYCIESHSVSLV 426 (631)
T ss_pred HHHHHHHcCCchhhhcC------CCCChhHHHHHHHhccHh-HHHHHHHHHhcCCccccccccCcchHHHHHHcCCHHHH
Confidence 58999999988654322 123569999987766654 33467799999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCCCCCCccccccccc----------cccccchhhhhccccccc
Q 001476 81 RRLLAAGADPDARDGESGWSSLHRALH----------FGHLAVASVLLQSGASIT 125 (1071)
Q Consensus 81 k~LL~~GAd~~~~d~~~G~TpL~~A~~----------~G~~~iv~lLl~~Ga~v~ 125 (1071)
++|+++|++++.+| ..|+||||+|+. ....+++++|++++.+++
T Consensus 427 elLLs~GADIN~kD-~~G~TpL~~A~~~~~~~~~~i~~~~~~il~lLLs~~p~i~ 480 (631)
T PHA02792 427 EWLIDNGADINITT-KYGSTCIGICVILAHACIPEIAELYIKILEIILSKLPTIE 480 (631)
T ss_pred HHHHHCCCCCCCcC-CCCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCCChh
Confidence 99999999999999 889999999975 223567888888887664
No 72
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=99.17 E-value=4.1e-11 Score=148.92 Aligned_cols=106 Identities=31% Similarity=0.410 Sum_probs=97.2
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCcccccccccc
Q 001476 29 KDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRALHF 108 (1071)
Q Consensus 29 TpLh~Aa~~G~~~~v~~iL~lLl~~Gadin~~d~~G~TpLH~Aa~~g~~eivk~LL~~GAd~~~~d~~~G~TpL~~A~~~ 108 (1071)
+.||.||..|+.+.++ +|+++|+|+|.+|..|+||||+||..|+.+++++||++|++++.+| ..|+||||+|+..
T Consensus 84 ~~L~~aa~~G~~~~vk----~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d-~~G~TpLh~A~~~ 158 (664)
T PTZ00322 84 VELCQLAASGDAVGAR----ILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLD-KDGKTPLELAEEN 158 (664)
T ss_pred HHHHHHHHcCCHHHHH----HHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCC-CCCCCHHHHHHHC
Confidence 4689999999999998 8889999999999999999999999999999999999999999999 8899999999999
Q ss_pred ccccchhhhhcc-------ccccccccCCCCCCcccCC
Q 001476 109 GHLAVASVLLQS-------GASITLEDCKSRTPVDLLS 139 (1071)
Q Consensus 109 G~~~iv~lLl~~-------Ga~v~l~d~~G~tPLdl~s 139 (1071)
|+.+++++|+.+ |++.+..+..|.+++...+
T Consensus 159 g~~~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~~ 196 (664)
T PTZ00322 159 GFREVVQLLSRHSQCHFELGANAKPDSFTGKPPSLEDS 196 (664)
T ss_pred CcHHHHHHHHhCCCcccccCCCCCccccCCCCccchhh
Confidence 999999999998 7887777777777765443
No 73
>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A.
Probab=99.16 E-value=1.5e-11 Score=104.10 Aligned_cols=55 Identities=42% Similarity=0.697 Sum_probs=33.4
Q ss_pred HHhCC-CCCcccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCccccccc
Q 001476 50 LKKNG-GNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRA 105 (1071)
Q Consensus 50 Ll~~G-adin~~d~~G~TpLH~Aa~~g~~eivk~LL~~GAd~~~~d~~~G~TpL~~A 105 (1071)
|+++| +++|.+|..|.||||+||.+|+.+++++||+.|+|++.+| ..|+||||+|
T Consensus 1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d-~~G~Tpl~~A 56 (56)
T PF13857_consen 1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKD-KDGQTPLHYA 56 (56)
T ss_dssp -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT----TTS--HHHH-
T ss_pred CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCc-CCCCCHHHhC
Confidence 45677 9999999999999999999999999999999999999999 8999999987
No 74
>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.
Probab=99.16 E-value=6.1e-11 Score=112.77 Aligned_cols=109 Identities=39% Similarity=0.563 Sum_probs=101.5
Q ss_pred CCCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCcccccc
Q 001476 25 GGVQKDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHR 104 (1071)
Q Consensus 25 ~~g~TpLh~Aa~~G~~~~v~~iL~lLl~~Gadin~~d~~G~TpLH~Aa~~g~~eivk~LL~~GAd~~~~d~~~G~TpL~~ 104 (1071)
..|.||||+|+..++.+.++ +|++.+.+++.++..|.||||+|+..++.+++++|+..|++++..+ ..|.||+|+
T Consensus 5 ~~g~t~l~~a~~~~~~~~i~----~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~-~~~~~~l~~ 79 (126)
T cd00204 5 EDGRTPLHLAASNGHLEVVK----LLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARD-KDGNTPLHL 79 (126)
T ss_pred cCCCCHHHHHHHcCcHHHHH----HHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccC-CCCCCHHHH
Confidence 46789999999999998888 8889999999999999999999999999999999999999999998 889999999
Q ss_pred ccccccccchhhhhccccccccccCCCCCCcccC
Q 001476 105 ALHFGHLAVASVLLQSGASITLEDCKSRTPVDLL 138 (1071)
Q Consensus 105 A~~~G~~~iv~lLl~~Ga~v~l~d~~G~tPLdl~ 138 (1071)
|+..++.+++++|+..+.+.+..+..+.+|+++.
T Consensus 80 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~ 113 (126)
T cd00204 80 AARNGNLDVVKLLLKHGADVNARDKDGRTPLHLA 113 (126)
T ss_pred HHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHH
Confidence 9999999999999999988888898999888664
No 75
>PHA02730 ankyrin-like protein; Provisional
Probab=99.13 E-value=7e-11 Score=143.87 Aligned_cols=119 Identities=14% Similarity=0.125 Sum_probs=95.0
Q ss_pred CHHHHHhCCCC-ccccCCccccCCCCCCchHHHH---HHHcCC----HHH-HHHHHHHHHhCCCCCcccCCCCCcHHHHH
Q 001476 1 MTELLVSHHGQ-KQTLQSPARKSSLGGVQKDLCL---AVREGS----LAD-VESALALLKKNGGNINSRNIFGLTPLHSA 71 (1071)
Q Consensus 1 Ive~LLe~ga~-~~~~~~~~~~~~~~~g~TpLh~---Aa~~G~----~~~-v~~iL~lLl~~Gadin~~d~~G~TpLH~A 71 (1071)
|+++||++|+. +.+.. +..|.||||. |...+. .+. ...++++|+.+|+|+|.+|..|+||||+|
T Consensus 397 IvelLIs~Ga~~dIN~k-------d~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~GADINakD~~G~TPLh~A 469 (672)
T PHA02730 397 VVRFIVENNGHMAINHV-------SNNGRLCMYGLILSRFNNCGYHCYETILIDVFDILSKYMDDIDMIDNENKTLLYYA 469 (672)
T ss_pred HHHHHHHcCCCcccccc-------ccCCCchHhHHHHHHhccccccccchhHHHHHHHHHhcccchhccCCCCCCHHHHH
Confidence 58999999884 33322 3457799984 333321 122 11345599999999999999999999999
Q ss_pred HhcCCHHHHHHHHhcCCCCCCCCCCCCcccccccccc--ccccchhhhhcccccccc
Q 001476 72 IWRNQVPIVRRLLAAGADPDARDGESGWSSLHRALHF--GHLAVASVLLQSGASITL 126 (1071)
Q Consensus 72 a~~g~~eivk~LL~~GAd~~~~d~~~G~TpL~~A~~~--G~~~iv~lLl~~Ga~v~l 126 (1071)
+..++.+++++|+++||+++..|...|.||||+|+.. ++.+++++|+++|+....
T Consensus 470 a~~~~~eive~LI~~GAdIN~~d~~~g~TaL~~Aa~~~~~~~eIv~~LLs~ga~i~~ 526 (672)
T PHA02730 470 VDVNNIQFARRLLEYGASVNTTSRSIINTAIQKSSYRRENKTKLVDLLLSYHPTLET 526 (672)
T ss_pred HHhCCHHHHHHHHHCCCCCCCCCCcCCcCHHHHHHHhhcCcHHHHHHHHHcCCCHHH
Confidence 9999999999999999999999933599999999874 789999999999988764
No 76
>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]
Probab=99.13 E-value=2e-11 Score=144.72 Aligned_cols=112 Identities=28% Similarity=0.265 Sum_probs=106.3
Q ss_pred CCCCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCccccc
Q 001476 24 LGGVQKDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLH 103 (1071)
Q Consensus 24 ~~~g~TpLh~Aa~~G~~~~v~~iL~lLl~~Gadin~~d~~G~TpLH~Aa~~g~~eivk~LL~~GAd~~~~d~~~G~TpL~ 103 (1071)
+..|.|.||+||.+|+..+++ +|+++.+-++.+|..|.+|||+|+|+|+.+++++||.++..+|..+ ..|.||||
T Consensus 46 d~~gfTalhha~Lng~~~is~----llle~ea~ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~-~e~~tplh 120 (854)
T KOG0507|consen 46 DYSGFTLLHHAVLNGQNQISK----LLLDYEALLDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDILNAVN-IENETPLH 120 (854)
T ss_pred CccchhHHHHHHhcCchHHHH----HHhcchhhhhhhhccCcceEEehhhcCcchHHHHHHhcccCCCccc-ccCcCccc
Confidence 347899999999999999888 8889999999999999999999999999999999999999999998 88999999
Q ss_pred cccccccccchhhhhccccccccccCCCCCCcccCCC
Q 001476 104 RALHFGHLAVASVLLQSGASITLEDCKSRTPVDLLSG 140 (1071)
Q Consensus 104 ~A~~~G~~~iv~lLl~~Ga~v~l~d~~G~tPLdl~sg 140 (1071)
.|+.+||.+++.+|+.+|++..++++.+.++++|.+-
T Consensus 121 laaqhgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~q 157 (854)
T KOG0507|consen 121 LAAQHGHLEVVFYLLKKNADPFIRNNSKETVLDLASR 157 (854)
T ss_pred hhhhhcchHHHHHHHhcCCCccccCcccccHHHHHHH
Confidence 9999999999999999999999999999999999773
No 77
>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.09 E-value=9.2e-11 Score=135.38 Aligned_cols=125 Identities=30% Similarity=0.348 Sum_probs=108.6
Q ss_pred HHHHHhCCCCccccCCccccCCCCCCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHH
Q 001476 2 TELLVSHHGQKQTLQSPARKSSLGGVQKDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVR 81 (1071)
Q Consensus 2 ve~LLe~ga~~~~~~~~~~~~~~~~g~TpLh~Aa~~G~~~~v~~iL~lLl~~Gadin~~d~~G~TpLH~Aa~~g~~eivk 81 (1071)
++.||..|+.+ ...+.+|.|+||-+|...+.++|+ +|+++|++||..|..||||||.|+..||..+++
T Consensus 56 v~~ll~~ga~~--------~~~n~DglTalhq~~id~~~e~v~----~l~e~ga~Vn~~d~e~wtPlhaaascg~~~i~~ 123 (527)
T KOG0505|consen 56 VRKLLNRGASP--------NLCNVDGLTALHQACIDDNLEMVK----FLVENGANVNAQDNEGWTPLHAAASCGYLNIVE 123 (527)
T ss_pred HHHHhccCCCc--------cccCCccchhHHHHHhcccHHHHH----HHHHhcCCccccccccCCcchhhcccccHHHHH
Confidence 45667656443 233458999999999999999999 999999999999999999999999999999999
Q ss_pred HHHhcCCCCCCCC----------------------------------------------------------CCCCccccc
Q 001476 82 RLLAAGADPDARD----------------------------------------------------------GESGWSSLH 103 (1071)
Q Consensus 82 ~LL~~GAd~~~~d----------------------------------------------------------~~~G~TpL~ 103 (1071)
+|+.+||++...+ ...|.|+||
T Consensus 124 ~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lH 203 (527)
T KOG0505|consen 124 YLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALH 203 (527)
T ss_pred HHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHH
Confidence 9999987744443 125899999
Q ss_pred cccccccccchhhhhccccccccccCCCCCCcccC
Q 001476 104 RALHFGHLAVASVLLQSGASITLEDCKSRTPVDLL 138 (1071)
Q Consensus 104 ~A~~~G~~~iv~lLl~~Ga~v~l~d~~G~tPLdl~ 138 (1071)
.|+.+|..++..+|+++|.+++.+|.+|++|++.+
T Consensus 204 vAaa~Gy~e~~~lLl~ag~~~~~~D~dgWtPlHAA 238 (527)
T KOG0505|consen 204 VAAANGYTEVAALLLQAGYSVNIKDYDGWTPLHAA 238 (527)
T ss_pred HHHhhhHHHHHHHHHHhccCcccccccCCCcccHH
Confidence 99999999999999999999999999999999763
No 78
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=99.08 E-value=1.1e-10 Score=147.54 Aligned_cols=110 Identities=23% Similarity=0.215 Sum_probs=94.6
Q ss_pred CCCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccC--------------CCCCcHHHHHHhcCCHHHHHHHHhcCCCC
Q 001476 25 GGVQKDLCLAVREGSLADVESALALLKKNGGNINSRN--------------IFGLTPLHSAIWRNQVPIVRRLLAAGADP 90 (1071)
Q Consensus 25 ~~g~TpLh~Aa~~G~~~~v~~iL~lLl~~Gadin~~d--------------~~G~TpLH~Aa~~g~~eivk~LL~~GAd~ 90 (1071)
..|.||||+||..|+.++++ +|+++|+|+|.++ ..|.||||+|+..|+.+++++|+++|+|+
T Consensus 126 ~~G~TpLhlAa~~~~~eiVk----lLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadi 201 (743)
T TIGR00870 126 TPGITALHLAAHRQNYEIVK----LLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADI 201 (743)
T ss_pred CCCCcHHHHHHHhCCHHHHH----HHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcch
Confidence 46899999999999999999 8999999999763 25899999999999999999999999999
Q ss_pred CCCCCCCCccccccccccc---------cccchhhhhcccccc-------ccccCCCCCCcccCC
Q 001476 91 DARDGESGWSSLHRALHFG---------HLAVASVLLQSGASI-------TLEDCKSRTPVDLLS 139 (1071)
Q Consensus 91 ~~~d~~~G~TpL~~A~~~G---------~~~iv~lLl~~Ga~v-------~l~d~~G~tPLdl~s 139 (1071)
+.+| ..|+||||+|+..+ ...+.++++..++.. +..|..|.||++++.
T Consensus 202 n~~d-~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~ 265 (743)
T TIGR00870 202 LTAD-SLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAA 265 (743)
T ss_pred hhHh-hhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhh
Confidence 9999 88999999999886 334666666665443 567889999998754
No 79
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=99.07 E-value=1.2e-10 Score=147.28 Aligned_cols=114 Identities=28% Similarity=0.233 Sum_probs=89.9
Q ss_pred CCCchHHHHHHHcCCHHHHHHHHHHHHhCCCC------Ccc----cCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCC
Q 001476 25 GGVQKDLCLAVREGSLADVESALALLKKNGGN------INS----RNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARD 94 (1071)
Q Consensus 25 ~~g~TpLh~Aa~~G~~~~v~~iL~lLl~~Gad------in~----~d~~G~TpLH~Aa~~g~~eivk~LL~~GAd~~~~d 94 (1071)
..|.||||.|+. ++.+.++.++.++...+.+ ++. .+..|.||||+||.+|+.++|++||++||+++.++
T Consensus 80 ~~G~T~Lh~A~~-~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~ 158 (743)
T TIGR00870 80 AVGDTLLHAISL-EYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARA 158 (743)
T ss_pred CcChHHHHHHHh-ccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCc
Confidence 346677777765 3445555555565555432 111 22469999999999999999999999999999764
Q ss_pred C-------------CCCccccccccccccccchhhhhccccccccccCCCCCCcccCC
Q 001476 95 G-------------ESGWSSLHRALHFGHLAVASVLLQSGASITLEDCKSRTPVDLLS 139 (1071)
Q Consensus 95 ~-------------~~G~TpL~~A~~~G~~~iv~lLl~~Ga~v~l~d~~G~tPLdl~s 139 (1071)
. ..|+||||+|+..|+.+++++|+++|++++..|..|.||++++.
T Consensus 159 ~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~d~~g~T~Lh~A~ 216 (743)
T TIGR00870 159 CGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADILTADSLGNTLLHLLV 216 (743)
T ss_pred CCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcchhhHhhhhhHHHHHHH
Confidence 1 25899999999999999999999999999999999999998754
No 80
>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]
Probab=99.06 E-value=3.4e-10 Score=118.58 Aligned_cols=113 Identities=29% Similarity=0.350 Sum_probs=103.5
Q ss_pred CCCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCC-----HHHHHHHHhcCC---CCCCCCCC
Q 001476 25 GGVQKDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQ-----VPIVRRLLAAGA---DPDARDGE 96 (1071)
Q Consensus 25 ~~g~TpLh~Aa~~G~~~~v~~iL~lLl~~Gadin~~d~~G~TpLH~Aa~~g~-----~eivk~LL~~GA---d~~~~d~~ 96 (1071)
..+.+++|.++..++...+. +|+..|++++.+|..|.||||+|+..++ .+++++||+.|+ +.+.+| .
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~-~ 145 (235)
T COG0666 71 LDGRLPLHSAASKGDDKIVK----LLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRD-E 145 (235)
T ss_pred ccccCHHHHHHHcCcHHHHH----HHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccC-C
Confidence 34678999999999999987 8889999999999999999999999999 999999999999 555557 8
Q ss_pred CCccccccccccccccchhhhhccccccccccCCCCCCcccCCCCc
Q 001476 97 SGWSSLHRALHFGHLAVASVLLQSGASITLEDCKSRTPVDLLSGPV 142 (1071)
Q Consensus 97 ~G~TpL~~A~~~G~~~iv~lLl~~Ga~v~l~d~~G~tPLdl~sg~v 142 (1071)
.|+||||+|+..|+.+++.+|+..|++++..+..|.++++.....-
T Consensus 146 ~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~ 191 (235)
T COG0666 146 DGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNG 191 (235)
T ss_pred CCCchhHHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhcccc
Confidence 9999999999999999999999999999999999999998866543
No 81
>KOG4214 consensus Myotrophin and similar proteins [Transcription]
Probab=99.05 E-value=2e-10 Score=104.67 Aligned_cols=75 Identities=32% Similarity=0.516 Sum_probs=69.0
Q ss_pred CCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCccccccc
Q 001476 26 GVQKDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRA 105 (1071)
Q Consensus 26 ~g~TpLh~Aa~~G~~~~v~~iL~lLl~~Gadin~~d~~G~TpLH~Aa~~g~~eivk~LL~~GAd~~~~d~~~G~TpL~~A 105 (1071)
+|.+|||+||-+|.+++++ +|+..|++|+.+|..|.|||..|++.||.+||++||..||+-.... .+|.+.+..+
T Consensus 33 ggR~plhyAAD~GQl~ile----fli~iGA~i~~kDKygITPLLsAvwEGH~~cVklLL~~GAdrt~~~-PdG~~~~eat 107 (117)
T KOG4214|consen 33 GGRTPLHYAADYGQLSILE----FLISIGANIQDKDKYGITPLLSAVWEGHRDCVKLLLQNGADRTIHA-PDGTALIEAT 107 (117)
T ss_pred CCcccchHhhhcchHHHHH----HHHHhccccCCccccCCcHHHHHHHHhhHHHHHHHHHcCcccceeC-CCchhHHhhc
Confidence 5789999999999998888 9999999999999999999999999999999999999999999887 7787776654
No 82
>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A ....
Probab=99.05 E-value=3e-10 Score=95.07 Aligned_cols=54 Identities=39% Similarity=0.505 Sum_probs=42.2
Q ss_pred CchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHH
Q 001476 27 VQKDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLL 84 (1071)
Q Consensus 27 g~TpLh~Aa~~G~~~~v~~iL~lLl~~Gadin~~d~~G~TpLH~Aa~~g~~eivk~LL 84 (1071)
|.||||+||+.|+.++++ +|+++|+|+|.+|..|+||||+||..|+.+++++||
T Consensus 1 g~t~lh~A~~~g~~~~~~----~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll 54 (54)
T PF13637_consen 1 GRTPLHWAARSGNLEIVK----LLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL 54 (54)
T ss_dssp SSBHHHHHHHTT-HHHHH----HHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred CChHHHHHHHhCCHHHHH----HHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence 568899999999988888 777889999999999999999999999999999886
No 83
>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]
Probab=99.02 E-value=2.6e-10 Score=129.99 Aligned_cols=103 Identities=29% Similarity=0.384 Sum_probs=88.4
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCcccccccccc
Q 001476 29 KDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRALHF 108 (1071)
Q Consensus 29 TpLh~Aa~~G~~~~v~~iL~lLl~~Gadin~~d~~G~TpLH~Aa~~g~~eivk~LL~~GAd~~~~d~~~G~TpL~~A~~~ 108 (1071)
-.|.-|+..|.++.|+.++ ..-.|+...++.|.||||-|++.||++||++||++|+|+|..| .+||||||+|+..
T Consensus 552 aLLLDaaLeGEldlVq~~i----~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~D-SdGWTPLHCAASC 626 (752)
T KOG0515|consen 552 ALLLDAALEGELDLVQRII----YEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAAD-SDGWTPLHCAASC 626 (752)
T ss_pred HHHHhhhhcchHHHHHHHH----HhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCcc-CCCCchhhhhhhc
Confidence 3467789999999999544 4557888899999999999999999999999999999999999 8999999999999
Q ss_pred ccccchhhhhccccccccccC-CCCCCcc
Q 001476 109 GHLAVASVLLQSGASITLEDC-KSRTPVD 136 (1071)
Q Consensus 109 G~~~iv~lLl~~Ga~v~l~d~-~G~tPLd 136 (1071)
++..+++.|++.|+.+..... +..|+++
T Consensus 627 Nnv~~ckqLVe~GaavfAsTlSDmeTa~e 655 (752)
T KOG0515|consen 627 NNVPMCKQLVESGAAVFASTLSDMETAAE 655 (752)
T ss_pred CchHHHHHHHhccceEEeeecccccchhh
Confidence 999999999999987654333 4455543
No 84
>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]
Probab=99.02 E-value=7.9e-10 Score=115.78 Aligned_cols=107 Identities=32% Similarity=0.430 Sum_probs=95.1
Q ss_pred HHHHHhCCCCccccCCccccCCCCCCchHHHHHHHcCC-----HHHHHHHHHHHHhCCC---CCcccCCCCCcHHHHHHh
Q 001476 2 TELLVSHHGQKQTLQSPARKSSLGGVQKDLCLAVREGS-----LADVESALALLKKNGG---NINSRNIFGLTPLHSAIW 73 (1071)
Q Consensus 2 ve~LLe~ga~~~~~~~~~~~~~~~~g~TpLh~Aa~~G~-----~~~v~~iL~lLl~~Ga---din~~d~~G~TpLH~Aa~ 73 (1071)
+++|+..+.+. +.. +..|.||||+|+..++ .++++ +|++.|+ +.+.+|..|.||||+|+.
T Consensus 89 ~~~l~~~~~~~-~~~-------~~~g~t~l~~a~~~~~~~~~~~~~~~----~ll~~g~~~~~~~~~~~~g~tpl~~A~~ 156 (235)
T COG0666 89 VKLLLASGADV-NAK-------DADGDTPLHLAALNGNPPEGNIEVAK----LLLEAGADLDVNNLRDEDGNTPLHWAAL 156 (235)
T ss_pred HHHHHHcCCCc-ccc-------cCCCCcHHHHHHhcCCcccchHHHHH----HHHHcCCCCCCccccCCCCCchhHHHHH
Confidence 35777777775 332 3568899999999999 89999 8889999 666679999999999999
Q ss_pred cCCHHHHHHHHhcCCCCCCCCCCCCccccccccccccccchhhhhccc
Q 001476 74 RNQVPIVRRLLAAGADPDARDGESGWSSLHRALHFGHLAVASVLLQSG 121 (1071)
Q Consensus 74 ~g~~eivk~LL~~GAd~~~~d~~~G~TpL~~A~~~G~~~iv~lLl~~G 121 (1071)
.|+.+++++|++.|++++.++ ..|.|++++|+..++..++..|+..+
T Consensus 157 ~~~~~~~~~ll~~~~~~~~~~-~~g~t~l~~a~~~~~~~~~~~l~~~~ 203 (235)
T COG0666 157 NGDADIVELLLEAGADPNSRN-SYGVTALDPAAKNGRIELVKLLLDKG 203 (235)
T ss_pred cCchHHHHHHHhcCCCCcccc-cCCCcchhhhcccchHHHHHHHHhcC
Confidence 999999999999999999998 89999999999999999999999976
No 85
>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A ....
Probab=98.97 E-value=2.7e-10 Score=95.36 Aligned_cols=54 Identities=43% Similarity=0.618 Sum_probs=46.4
Q ss_pred CCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCccccccccccccccchhhhh
Q 001476 64 GLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRALHFGHLAVASVLL 118 (1071)
Q Consensus 64 G~TpLH~Aa~~g~~eivk~LL~~GAd~~~~d~~~G~TpL~~A~~~G~~~iv~lLl 118 (1071)
|+||||+||..|+.+++++|+++|++++.+| .+|+||||+|+..|+.+++++|+
T Consensus 1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d-~~g~t~lh~A~~~g~~~~~~~Ll 54 (54)
T PF13637_consen 1 GRTPLHWAARSGNLEIVKLLLEHGADINAQD-EDGRTPLHYAAKNGNIDIVKFLL 54 (54)
T ss_dssp SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B--TTS--HHHHHHHTT-HHHHHHHH
T ss_pred CChHHHHHHHhCCHHHHHHHHHCCCCCCCCC-CCCCCHHHHHHHccCHHHHHHHC
Confidence 7899999999999999999999999999999 89999999999999999999986
No 86
>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]
Probab=98.96 E-value=5.1e-10 Score=127.71 Aligned_cols=96 Identities=24% Similarity=0.222 Sum_probs=85.6
Q ss_pred cCCCCCCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCcc
Q 001476 21 KSSLGGVQKDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWS 100 (1071)
Q Consensus 21 ~~~~~~g~TpLh~Aa~~G~~~~v~~iL~lLl~~Gadin~~d~~G~TpLH~Aa~~g~~eivk~LL~~GAd~~~~d~~~G~T 100 (1071)
..++.+|.|+||-|+..||+++|+ +|++.|+|||..|.+||||||+||..+++.+|+.|++.|+-+-+....++.|
T Consensus 577 SqpNdEGITaLHNAiCaghyeIVk----FLi~~ganVNa~DSdGWTPLHCAASCNnv~~ckqLVe~GaavfAsTlSDmeT 652 (752)
T KOG0515|consen 577 SQPNDEGITALHNAICAGHYEIVK----FLIEFGANVNAADSDGWTPLHCAASCNNVPMCKQLVESGAAVFASTLSDMET 652 (752)
T ss_pred CCCCccchhHHhhhhhcchhHHHH----HHHhcCCcccCccCCCCchhhhhhhcCchHHHHHHHhccceEEeeecccccc
Confidence 345678999999999999999999 9999999999999999999999999999999999999999988877677899
Q ss_pred cccccc--ccccccchhhhhcc
Q 001476 101 SLHRAL--HFGHLAVASVLLQS 120 (1071)
Q Consensus 101 pL~~A~--~~G~~~iv~lLl~~ 120 (1071)
|...+- ..|..+|..+|...
T Consensus 653 a~eKCee~eeGY~~CsqyL~~v 674 (752)
T KOG0515|consen 653 AAEKCEEMEEGYDQCSQYLYGV 674 (752)
T ss_pred hhhhcchhhhhHHHHHHHHHHH
Confidence 988773 45778888888753
No 87
>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.
Probab=98.94 E-value=2.7e-09 Score=101.45 Aligned_cols=105 Identities=36% Similarity=0.528 Sum_probs=92.3
Q ss_pred CHHHHHhCCCCccccCCccccCCCCCCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHH
Q 001476 1 MTELLVSHHGQKQTLQSPARKSSLGGVQKDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIV 80 (1071)
Q Consensus 1 Ive~LLe~ga~~~~~~~~~~~~~~~~g~TpLh~Aa~~G~~~~v~~iL~lLl~~Gadin~~d~~G~TpLH~Aa~~g~~eiv 80 (1071)
++++|++++..... ....|.||||+|+..++.+.++ +|++.+++++..+..|.||+|+|+..++.+++
T Consensus 22 ~i~~li~~~~~~~~--------~~~~g~~~l~~a~~~~~~~~~~----~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~ 89 (126)
T cd00204 22 VVKLLLENGADVNA--------KDNDGRTPLHLAAKNGHLEIVK----LLLEKGADVNARDKDGNTPLHLAARNGNLDVV 89 (126)
T ss_pred HHHHHHHcCCCCCc--------cCCCCCcHHHHHHHcCCHHHHH----HHHHcCCCccccCCCCCCHHHHHHHcCcHHHH
Confidence 46889987766421 1346779999999999998888 88889999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCCCCCCccccccccccccccchhhhh
Q 001476 81 RRLLAAGADPDARDGESGWSSLHRALHFGHLAVASVLL 118 (1071)
Q Consensus 81 k~LL~~GAd~~~~d~~~G~TpL~~A~~~G~~~iv~lLl 118 (1071)
++|+..+.+++..+ ..|.||+++|...++.+++++|+
T Consensus 90 ~~L~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~Ll 126 (126)
T cd00204 90 KLLLKHGADVNARD-KDGRTPLHLAAKNGHLEVVKLLL 126 (126)
T ss_pred HHHHHcCCCCcccC-CCCCCHHHHHHhcCCHHHHHHhC
Confidence 99999999999999 88999999999999999988874
No 88
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]
Probab=98.92 E-value=1.1e-09 Score=117.53 Aligned_cols=91 Identities=26% Similarity=0.274 Sum_probs=72.4
Q ss_pred CCCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCccc-CCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCccccc
Q 001476 25 GGVQKDLCLAVREGSLADVESALALLKKNGGNINSR-NIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLH 103 (1071)
Q Consensus 25 ~~g~TpLh~Aa~~G~~~~v~~iL~lLl~~Gadin~~-d~~G~TpLH~Aa~~g~~eivk~LL~~GAd~~~~d~~~G~TpL~ 103 (1071)
..|.|+|..|+..|+++.++ +|++.|+|||.. +..+.||||+|+..|+.+++++||++|+.+...| .-|+|+-.
T Consensus 43 ~sGMs~LahAaykGnl~~v~----lll~~gaDvN~~qhg~~YTpLmFAALSGn~dvcrllldaGa~~~~vN-svgrTAaq 117 (396)
T KOG1710|consen 43 PSGMSVLAHAAYKGNLTLVE----LLLELGADVNDKQHGTLYTPLMFAALSGNQDVCRLLLDAGARMYLVN-SVGRTAAQ 117 (396)
T ss_pred CCcccHHHHHHhcCcHHHHH----HHHHhCCCcCcccccccccHHHHHHHcCCchHHHHHHhccCcccccc-chhhhHHH
Confidence 45678888888888888888 777888888864 4677888888888888888888888888888888 66888888
Q ss_pred cccccccccchhhhhcc
Q 001476 104 RALHFGHLAVASVLLQS 120 (1071)
Q Consensus 104 ~A~~~G~~~iv~lLl~~ 120 (1071)
+|++-|+.+|+.++-++
T Consensus 118 mAAFVG~H~CV~iINN~ 134 (396)
T KOG1710|consen 118 MAAFVGHHECVAIINNH 134 (396)
T ss_pred HHHHhcchHHHHHHhcc
Confidence 88888888888766554
No 89
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.86 E-value=3e-09 Score=123.12 Aligned_cols=53 Identities=38% Similarity=0.551 Sum_probs=51.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHhhhHHHHHHHHHHcCC
Q 001476 695 QEISKQVRALRKKLQQIEMLEVKLSNGHILDEQQIAKLQTKSVLERSLAELGV 747 (1071)
Q Consensus 695 ~~~~k~~r~l~kkl~~ie~l~~k~~~g~~l~~~q~~k~~~~~~~~~~l~~l~~ 747 (1071)
.+.+||||+|.||||+||+||++++.||.|++.||+||++|.++.+||+.||+
T Consensus 514 ~~~ekKir~L~kkLraIe~LK~r~a~Ge~Le~nQl~kIq~E~~~l~ELk~L~~ 566 (566)
T KOG2315|consen 514 SEEEKKIRSLLKKLRAIEALKERMANGEQLEVNQLNKIQKEPKLLSELKKLGW 566 (566)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHhhhHHHHHHHHhhcC
Confidence 48999999999999999999999999999999999999999999999999986
No 90
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.85 E-value=1.9e-09 Score=129.94 Aligned_cols=111 Identities=32% Similarity=0.387 Sum_probs=101.1
Q ss_pred CCCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCccc---------C---C-----------CCCcHHHHHHhcCCHHHHH
Q 001476 25 GGVQKDLCLAVREGSLADVESALALLKKNGGNINSR---------N---I-----------FGLTPLHSAIWRNQVPIVR 81 (1071)
Q Consensus 25 ~~g~TpLh~Aa~~G~~~~v~~iL~lLl~~Gadin~~---------d---~-----------~G~TpLH~Aa~~g~~eivk 81 (1071)
-.|.|+||.|+.+-+.+.|. +|++.|||||++ | . +|..||-+||..+..+|++
T Consensus 182 Y~GqSaLHiAIv~~~~~~V~----lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivr 257 (782)
T KOG3676|consen 182 YYGQSALHIAIVNRDAELVR----LLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVR 257 (782)
T ss_pred hcCcchHHHHHHhccHHHHH----HHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHH
Confidence 36899999999999999999 899999999865 1 1 4779999999999999999
Q ss_pred HHHhcCCCCCCCCCCCCccccccccccccccchhhhhccccc--cccccCCCCCCcccCCC
Q 001476 82 RLLAAGADPDARDGESGWSSLHRALHFGHLAVASVLLQSGAS--ITLEDCKSRTPVDLLSG 140 (1071)
Q Consensus 82 ~LL~~GAd~~~~d~~~G~TpL~~A~~~G~~~iv~lLl~~Ga~--v~l~d~~G~tPLdl~sg 140 (1071)
+|+++|||++.+| ..|+|.||....+-..++-.+++++|+. ....|+.|-||+.|+..
T Consensus 258 lLl~~gAd~~aqD-S~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAak 317 (782)
T KOG3676|consen 258 LLLAHGADPNAQD-SNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAK 317 (782)
T ss_pred HHHhcCCCCCccc-cCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHH
Confidence 9999999999999 8899999999988888999999999999 88999999999988653
No 91
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=98.83 E-value=2.3e-09 Score=88.50 Aligned_cols=49 Identities=35% Similarity=0.546 Sum_probs=46.5
Q ss_pred ceeeeccCCcccccC-CCCcccccCCceeccCCCceEEEEecCCceEEEE
Q 001476 155 TEVFSWGSGANYQLG-TGNAHLQKLPCKVDSLHGFVIKLISAAKFHSVAV 203 (1071)
Q Consensus 155 g~VYsWGsN~~GQLG-~G~~~~~~~P~~V~~l~~~~I~~Va~G~~HslaL 203 (1071)
|+||+||.|.+|||| .+.......|++|+.+.+.+|++|+||..|+++|
T Consensus 2 G~vy~wG~n~~GqLG~~~~~~~~~~P~~v~~~~~~~i~~va~G~~ht~~l 51 (51)
T PF00415_consen 2 GRVYSWGSNDYGQLGSGGDNKNVSVPTKVPFLSGVRIVQVACGSDHTLAL 51 (51)
T ss_dssp SEEEEEEEETTSTTSSSSSSSEEEEEEEEGGGTTSEEEEEEEESSEEEEE
T ss_pred CcEEEEECCCCCCCCCCCCCCceeEEEEECCCCCCCEEEEEeCcceEEEC
Confidence 789999999999999 8888889999999999999999999999999987
No 92
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=98.83 E-value=5.8e-09 Score=86.12 Aligned_cols=50 Identities=34% Similarity=0.567 Sum_probs=43.7
Q ss_pred CCcEEEEecCCCCCCC-CCCCccCCCCcceeeeeeeecCCCCCCEEEEEecCceEEEE
Q 001476 206 LGEVYTWGYGRGGRLG-HPDFDIHSGQAAVITPRRVTSGLGSRRVKTIAAAKHHTVLA 262 (1071)
Q Consensus 206 dG~Vy~WG~N~~GQLG-~g~~~~~s~~~~~~~P~~V~~~l~~~~Iv~IAcG~~HslaL 262 (1071)
||+||+||.|.+|||| .+. ......|++|. .+...+|++|+||.+|+++|
T Consensus 1 dG~vy~wG~n~~GqLG~~~~------~~~~~~P~~v~-~~~~~~i~~va~G~~ht~~l 51 (51)
T PF00415_consen 1 DGRVYSWGSNDYGQLGSGGD------NKNVSVPTKVP-FLSGVRIVQVACGSDHTLAL 51 (51)
T ss_dssp TSEEEEEEEETTSTTSSSSS------SSEEEEEEEEG-GGTTSEEEEEEEESSEEEEE
T ss_pred CCcEEEEECCCCCCCCCCCC------CCceeEEEEEC-CCCCCCEEEEEeCcceEEEC
Confidence 6999999999999999 442 36788999998 66668999999999999987
No 93
>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]
Probab=98.80 E-value=2.4e-09 Score=127.46 Aligned_cols=109 Identities=30% Similarity=0.291 Sum_probs=96.0
Q ss_pred CHHHHHhCCCCccccCCccccCCCCCCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHH
Q 001476 1 MTELLVSHHGQKQTLQSPARKSSLGGVQKDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIV 80 (1071)
Q Consensus 1 Ive~LLe~ga~~~~~~~~~~~~~~~~g~TpLh~Aa~~G~~~~v~~iL~lLl~~Gadin~~d~~G~TpLH~Aa~~g~~eiv 80 (1071)
|+++|+++.+....+ +..|.+|||+||..|+.++++ +|+.++..+|..+..|.||||.|+..||++++
T Consensus 64 is~llle~ea~ldl~--------d~kg~~plhlaaw~g~~e~vk----mll~q~d~~na~~~e~~tplhlaaqhgh~dvv 131 (854)
T KOG0507|consen 64 ISKLLLDYEALLDLC--------DTKGILPLHLAAWNGNLEIVK----MLLLQTDILNAVNIENETPLHLAAQHGHLEVV 131 (854)
T ss_pred HHHHHhcchhhhhhh--------hccCcceEEehhhcCcchHHH----HHHhcccCCCcccccCcCccchhhhhcchHHH
Confidence 467788765543332 245678999999999999999 78888899999999999999999999999999
Q ss_pred HHHHhcCCCCCCCCCCCCccccccccccccccchhhhhcccc
Q 001476 81 RRLLAAGADPDARDGESGWSSLHRALHFGHLAVASVLLQSGA 122 (1071)
Q Consensus 81 k~LL~~GAd~~~~d~~~G~TpL~~A~~~G~~~iv~lLl~~Ga 122 (1071)
.+||.+|+|+-++| +++.|+|++|+++|..+++.+|++...
T Consensus 132 ~~Ll~~~adp~i~n-ns~~t~ldlA~qfgr~~Vvq~ll~~~~ 172 (854)
T KOG0507|consen 132 FYLLKKNADPFIRN-NSKETVLDLASRFGRAEVVQMLLQKKF 172 (854)
T ss_pred HHHHhcCCCccccC-cccccHHHHHHHhhhhHHHHHHhhhcc
Confidence 99999999999999 899999999999999999999998743
No 94
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.78 E-value=6.8e-09 Score=125.27 Aligned_cols=116 Identities=20% Similarity=0.195 Sum_probs=99.8
Q ss_pred CHHHHHhCCCCccccCCccccCC---------------CCCCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCCC
Q 001476 1 MTELLVSHHGQKQTLQSPARKSS---------------LGGVQKDLCLAVREGSLADVESALALLKKNGGNINSRNIFGL 65 (1071)
Q Consensus 1 Ive~LLe~ga~~~~~~~~~~~~~---------------~~~g~TpLh~Aa~~G~~~~v~~iL~lLl~~Gadin~~d~~G~ 65 (1071)
+|++||+.||++.+.---.=..+ --=|+.||.+||..++.++++ +|+++|||+|++|.+|+
T Consensus 199 ~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivr----lLl~~gAd~~aqDS~GN 274 (782)
T KOG3676|consen 199 LVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVR----LLLAHGADPNAQDSNGN 274 (782)
T ss_pred HHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHH----HHHhcCCCCCccccCCC
Confidence 47899999999876522100000 112689999999999999999 88899999999999999
Q ss_pred cHHHHHHhcCCHHHHHHHHhcCCC--CCCCCCCCCccccccccccccccchhhhhccc
Q 001476 66 TPLHSAIWRNQVPIVRRLLAAGAD--PDARDGESGWSSLHRALHFGHLAVASVLLQSG 121 (1071)
Q Consensus 66 TpLH~Aa~~g~~eivk~LL~~GAd--~~~~d~~~G~TpL~~A~~~G~~~iv~lLl~~G 121 (1071)
|.||.++..-..++-.++|++|++ ..++| ..|.|||.+|++.|+.++.+.+++..
T Consensus 275 TVLH~lVi~~~~~My~~~L~~ga~~l~~v~N-~qgLTPLtLAaklGk~emf~~ile~~ 331 (782)
T KOG3676|consen 275 TVLHMLVIHFVTEMYDLALELGANALEHVRN-NQGLTPLTLAAKLGKKEMFQHILERR 331 (782)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCCccccccc-cCCCChHHHHHHhhhHHHHHHHHHhh
Confidence 999999999999999999999999 88888 89999999999999999999999863
No 95
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=1.1e-10 Score=140.19 Aligned_cols=182 Identities=23% Similarity=0.373 Sum_probs=136.8
Q ss_pred cCCceeccCCCceEEEEecCCceEEEEecCCcEEEEecCCCCCCCCCCCccCCCCcceeeeeeeecCCCCCCEEEEEecC
Q 001476 177 KLPCKVDSLHGFVIKLISAAKFHSVAVTSLGEVYTWGYGRGGRLGHPDFDIHSGQAAVITPRRVTSGLGSRRVKTIAAAK 256 (1071)
Q Consensus 177 ~~P~~V~~l~~~~I~~Va~G~~HslaLT~dG~Vy~WG~N~~GQLG~g~~~~~s~~~~~~~P~~V~~~l~~~~Iv~IAcG~ 256 (1071)
..|+.+..+....|.+|+||.+|+++++..|++|+||.|.+||+|.+.. . .... |..+. .+.+....+|+||.
T Consensus 3 ~~~~~~~~l~~k~~lq~~cGn~hclal~~~g~~~~wg~~~~g~~~~~~~---~--~~~~-p~~~~-sl~g~p~a~v~~g~ 75 (850)
T KOG0941|consen 3 RAPRLVLILNYKHILQVGCGNNHCLALSCAGELFVWGMNNNGQLGRALY---F--PDAK-PEPVE-SLKGVPLAQVSAGE 75 (850)
T ss_pred chhHHHHHHhhhhhhhhccccHHHHhhhccCCeeeccCCccchhhhhcc---C--CCCC-Cccch-hhcCCcHHHHhcCC
Confidence 3567777777788999999999999999999999999999999999832 1 1122 77777 77888999999999
Q ss_pred ceEEEEEc-------CCcEEEEeCCCCCCcCCCCCCCCCcceeeccC-cccEEEEEEcCCceeEE-ecCCcEEEEeCCCC
Q 001476 257 HHTVLATE-------GGEVFTWGSNREGQLGYTSVDTQPTPRRVSSL-KLKIIAVAAANKHTAVV-SESGEVFTWGCNRE 327 (1071)
Q Consensus 257 ~HslaLT~-------dG~VyswG~N~~GQLG~g~~~~~~~P~~V~~l-~~~Iv~VacG~~HSlaL-t~dG~VY~WG~N~~ 327 (1071)
.|+++++. +|.++++|....||+|+........|..+... ...+.+|+||..|+.++ ..-|++|.+|.+..
T Consensus 76 ~hs~~lS~~~~~lt~e~~~fs~Ga~~~~q~~h~~~~~~~~~~~v~e~i~~~~t~ia~~~~ht~a~v~~l~qsf~~~~~~s 155 (850)
T KOG0941|consen 76 AHSFALSSHTVLLTDEGKVFSFGAGSTGQLGHSLTENEVLPLLVLELIGSRVTRIACVRGHTLAIVPRLGQSFSFGKGAS 155 (850)
T ss_pred CcchhhhhchhhcchhccccccCCcccccccccccccccccHHHHHHHhhhhHHHHHHHHHHHhhhhhhcceeecccCCC
Confidence 99888766 99999999999999999666666666666533 46899999999999985 56689999999988
Q ss_pred C--CcCCCCCCCCCcccceeeec---cCCCCEEEEEecCCeEEEEeeCCc
Q 001476 328 G--QLGYGTSNSASNYTPRVVES---LKGKDLVGVAAAKYHTIVLGADGE 372 (1071)
Q Consensus 328 G--QLG~g~~~~~~~~~P~~V~~---l~~~~I~~IaaG~~hTlaLt~dG~ 372 (1071)
| ++-. ...+..... .....+..+.+|.+.+..|...+.
T Consensus 156 Gk~~i~s-------~s~~~~l~~~d~~~~~~~~~~~~g~dq~~~l~~~~~ 198 (850)
T KOG0941|consen 156 GKGVIVS-------LSGEDLLRDHDSEKDHRCSLAFAGGDQTFSLSSKGE 198 (850)
T ss_pred CCceeec-------cchhhhcccccHHHHHHHHHHhcCCCceEEEEeecc
Confidence 7 1100 001100110 011234567888888888876554
No 96
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]
Probab=98.76 E-value=5.5e-09 Score=112.28 Aligned_cols=109 Identities=23% Similarity=0.312 Sum_probs=97.6
Q ss_pred CCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCccccccc
Q 001476 26 GVQKDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRA 105 (1071)
Q Consensus 26 ~g~TpLh~Aa~~G~~~~v~~iL~lLl~~Gadin~~d~~G~TpLH~Aa~~g~~eivk~LL~~GAd~~~~d~~~G~TpL~~A 105 (1071)
.-..||..+.-.++.+... .|++.--++|.+|.+|.++|..|+..|+.++|++||+.|||+|......++||||+|
T Consensus 11 ~~~~~Lle~i~Kndt~~a~----~LLs~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFA 86 (396)
T KOG1710|consen 11 APKSPLLEAIDKNDTEAAL----ALLSTVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFA 86 (396)
T ss_pred chhhHHHHHHccCcHHHHH----HHHHHhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHH
Confidence 3457899999999988777 455555679999999999999999999999999999999999997667899999999
Q ss_pred cccccccchhhhhccccccccccCCCCCCcccC
Q 001476 106 LHFGHLAVASVLLQSGASITLEDCKSRTPVDLL 138 (1071)
Q Consensus 106 ~~~G~~~iv~lLl~~Ga~v~l~d~~G~tPLdl~ 138 (1071)
+..|+.++.++|++.|+.....+.-|+|+.+++
T Consensus 87 ALSGn~dvcrllldaGa~~~~vNsvgrTAaqmA 119 (396)
T KOG1710|consen 87 ALSGNQDVCRLLLDAGARMYLVNSVGRTAAQMA 119 (396)
T ss_pred HHcCCchHHHHHHhccCccccccchhhhHHHHH
Confidence 999999999999999999999999999987663
No 97
>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A.
Probab=98.76 E-value=8.7e-09 Score=87.16 Aligned_cols=56 Identities=34% Similarity=0.334 Sum_probs=31.1
Q ss_pred HHhCCCCccccCCccccCCCCCCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHH
Q 001476 5 LVSHHGQKQTLQSPARKSSLGGVQKDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSA 71 (1071)
Q Consensus 5 LLe~ga~~~~~~~~~~~~~~~~g~TpLh~Aa~~G~~~~v~~iL~lLl~~Gadin~~d~~G~TpLH~A 71 (1071)
||+++....+.. +..|.||||+||..|+.++++ +|++.|+|++.+|..|+||||+|
T Consensus 1 LL~~~~~~~n~~-------d~~G~T~LH~A~~~g~~~~v~----~Ll~~g~d~~~~d~~G~Tpl~~A 56 (56)
T PF13857_consen 1 LLEHGPADVNAQ-------DKYGNTPLHWAARYGHSEVVR----LLLQNGADPNAKDKDGQTPLHYA 56 (56)
T ss_dssp -----T--TT----------TTS--HHHHHHHHT-HHHHH----HHHHCT--TT---TTS--HHHH-
T ss_pred CCccCcCCCcCc-------CCCCCcHHHHHHHcCcHHHHH----HHHHCcCCCCCCcCCCCCHHHhC
Confidence 567663333332 456789999999999999999 78899999999999999999997
No 98
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=98.74 E-value=1.4e-08 Score=74.97 Aligned_cols=30 Identities=47% Similarity=0.721 Sum_probs=26.1
Q ss_pred EEEEEecCceEEEEEcCCcEEEEeCCCCCC
Q 001476 249 VKTIAAAKHHTVLATEGGEVFTWGSNREGQ 278 (1071)
Q Consensus 249 Iv~IAcG~~HslaLT~dG~VyswG~N~~GQ 278 (1071)
|++|+||.+|+++|+++|+||+||.|.+||
T Consensus 1 V~~ia~G~~ht~al~~~g~v~~wG~n~~GQ 30 (30)
T PF13540_consen 1 VVQIACGGYHTCALTSDGEVYCWGDNNYGQ 30 (30)
T ss_dssp EEEEEEESSEEEEEE-TTEEEEEE--TTST
T ss_pred CEEEEecCCEEEEEEcCCCEEEEcCCcCCC
Confidence 789999999999999999999999999998
No 99
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=98.71 E-value=1.5e-08 Score=74.78 Aligned_cols=30 Identities=37% Similarity=0.782 Sum_probs=26.1
Q ss_pred EEEEEEcCCceeEEecCCcEEEEeCCCCCC
Q 001476 300 IIAVAAANKHTAVVSESGEVFTWGCNREGQ 329 (1071)
Q Consensus 300 Iv~VacG~~HSlaLt~dG~VY~WG~N~~GQ 329 (1071)
|++|+||.+|+++|+++|+||+||.|.+||
T Consensus 1 V~~ia~G~~ht~al~~~g~v~~wG~n~~GQ 30 (30)
T PF13540_consen 1 VVQIACGGYHTCALTSDGEVYCWGDNNYGQ 30 (30)
T ss_dssp EEEEEEESSEEEEEE-TTEEEEEE--TTST
T ss_pred CEEEEecCCEEEEEEcCCCEEEEcCCcCCC
Confidence 789999999999999999999999999998
No 100
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=98.68 E-value=4.1e-08 Score=122.41 Aligned_cols=92 Identities=18% Similarity=0.134 Sum_probs=80.1
Q ss_pred HHHHHhCCCCccccCCccccCCCCCCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHH
Q 001476 2 TELLVSHHGQKQTLQSPARKSSLGGVQKDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVR 81 (1071)
Q Consensus 2 ve~LLe~ga~~~~~~~~~~~~~~~~g~TpLh~Aa~~G~~~~v~~iL~lLl~~Gadin~~d~~G~TpLH~Aa~~g~~eivk 81 (1071)
+++||++|++.+.. +..|.||||+||..|+.++++ +|+++|+|+|.+|..|.||||+|+..|+.++++
T Consensus 98 vk~LL~~Gadin~~--------d~~G~TpLh~Aa~~g~~eiv~----~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~ 165 (664)
T PTZ00322 98 ARILLTGGADPNCR--------DYDGRTPLHIACANGHVQVVR----VLLEFGADPTLLDKDGKTPLELAEENGFREVVQ 165 (664)
T ss_pred HHHHHHCCCCCCCc--------CCCCCcHHHHHHHCCCHHHHH----HHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHH
Confidence 68899988775432 346789999999999999999 888999999999999999999999999999999
Q ss_pred HHHhc-------CCCCCCCCCCCCcccccccc
Q 001476 82 RLLAA-------GADPDARDGESGWSSLHRAL 106 (1071)
Q Consensus 82 ~LL~~-------GAd~~~~d~~~G~TpL~~A~ 106 (1071)
+|+++ |++++..+ ..|.+|+..+.
T Consensus 166 ~Ll~~~~~~~~~ga~~~~~~-~~g~~~~~~~~ 196 (664)
T PTZ00322 166 LLSRHSQCHFELGANAKPDS-FTGKPPSLEDS 196 (664)
T ss_pred HHHhCCCcccccCCCCCccc-cCCCCccchhh
Confidence 99999 88888887 77888866543
No 101
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=7.7e-10 Score=133.22 Aligned_cols=172 Identities=24% Similarity=0.380 Sum_probs=128.9
Q ss_pred CCCCCCEEEEEecCceEEEEEcCCcEEEEeCCCCCCcCCCCCCCCCcceeeccCc-ccEEEEEEcCCceeEEec------
Q 001476 243 GLGSRRVKTIAAAKHHTVLATEGGEVFTWGSNREGQLGYTSVDTQPTPRRVSSLK-LKIIAVAAANKHTAVVSE------ 315 (1071)
Q Consensus 243 ~l~~~~Iv~IAcG~~HslaLT~dG~VyswG~N~~GQLG~g~~~~~~~P~~V~~l~-~~Iv~VacG~~HSlaLt~------ 315 (1071)
.+...+|.+++||.+|+++++..|++|+||.|.+||+|.+.......|..+..+. .+..+|+||..|++++..
T Consensus 10 ~l~~k~~lq~~cGn~hclal~~~g~~~~wg~~~~g~~~~~~~~~~~~p~~~~sl~g~p~a~v~~g~~hs~~lS~~~~~lt 89 (850)
T KOG0941|consen 10 ILNYKHILQVGCGNNHCLALSCAGELFVWGMNNNGQLGRALYFPDAKPEPVESLKGVPLAQVSAGEAHSFALSSHTVLLT 89 (850)
T ss_pred HHhhhhhhhhccccHHHHhhhccCCeeeccCCccchhhhhccCCCCCCccchhhcCCcHHHHhcCCCcchhhhhchhhcc
Confidence 3445689999999999999999999999999999999998444333488887664 578899999998887766
Q ss_pred -CCcEEEEeCCCCCCcCCCCCCCCCcccceeeeccCCCCEEEEEecCCeEEEEe-eCCcEEEEecCCCCC--CCccce--
Q 001476 316 -SGEVFTWGCNREGQLGYGTSNSASNYTPRVVESLKGKDLVGVAAAKYHTIVLG-ADGERVIVARNLKKS--GSTPLK-- 389 (1071)
Q Consensus 316 -dG~VY~WG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~I~~IaaG~~hTlaLt-~dG~Vy~wG~n~~~~--~~~P~~-- 389 (1071)
.|.++.+|....||+|+.... ....|..+..+-+..+..|+||..|+++.. .-|++|.+|.+..+. ..++..
T Consensus 90 ~e~~~fs~Ga~~~~q~~h~~~~--~~~~~~~v~e~i~~~~t~ia~~~~ht~a~v~~l~qsf~~~~~~sGk~~i~s~s~~~ 167 (850)
T KOG0941|consen 90 DEGKVFSFGAGSTGQLGHSLTE--NEVLPLLVLELIGSRVTRIACVRGHTLAIVPRLGQSFSFGKGASGKGVIVSLSGED 167 (850)
T ss_pred hhccccccCCcccccccccccc--cccccHHHHHHHhhhhHHHHHHHHHHHhhhhhhcceeecccCCCCCceeeccchhh
Confidence 999999999999999994432 355688887777889999999998888764 457899998876541 111111
Q ss_pred ---ecc-ccCCcEEEEEeCCCcceEEecCCc
Q 001476 390 ---FHR-KIKLHVVSIAAGMVHSTALTEDGA 416 (1071)
Q Consensus 390 ---~~~-~~~~~I~~Ia~G~~hslaLt~dG~ 416 (1071)
.+. .....+..+.+|+..++.+...+.
T Consensus 168 ~l~~~d~~~~~~~~~~~~g~dq~~~l~~~~~ 198 (850)
T KOG0941|consen 168 LLRDHDSEKDHRCSLAFAGGDQTFSLSSKGE 198 (850)
T ss_pred hcccccHHHHHHHHHHhcCCCceEEEEeecc
Confidence 000 011134557788888877765543
No 102
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=98.52 E-value=6.6e-08 Score=109.83 Aligned_cols=95 Identities=26% Similarity=0.383 Sum_probs=86.3
Q ss_pred CCCCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHhc-CCCCCCCCCCCCcccc
Q 001476 24 LGGVQKDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAA-GADPDARDGESGWSSL 102 (1071)
Q Consensus 24 ~~~g~TpLh~Aa~~G~~~~v~~iL~lLl~~Gadin~~d~~G~TpLH~Aa~~g~~eivk~LL~~-GAd~~~~d~~~G~TpL 102 (1071)
.+++..++.+||+.|++..++ .+.-.|.|++.+|-+.+|+||.||..|+.++|++||+. +.+++.+| .+|+|||
T Consensus 503 ~~~~~i~~~~aa~~GD~~alr----Rf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kD-Rw~rtPl 577 (622)
T KOG0506|consen 503 ENDTVINVMYAAKNGDLSALR----RFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKD-RWGRTPL 577 (622)
T ss_pred cccchhhhhhhhhcCCHHHHH----HHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhh-ccCCCcc
Confidence 356678899999999999888 55568999999999999999999999999999999987 69999999 9999999
Q ss_pred ccccccccccchhhhhccccc
Q 001476 103 HRALHFGHLAVASVLLQSGAS 123 (1071)
Q Consensus 103 ~~A~~~G~~~iv~lLl~~Ga~ 123 (1071)
+-|.+++|.+++++|-++...
T Consensus 578 DdA~~F~h~~v~k~L~~~~~~ 598 (622)
T KOG0506|consen 578 DDAKHFKHKEVVKLLEEAQYP 598 (622)
T ss_pred hHhHhcCcHHHHHHHHHHhcc
Confidence 999999999999999876543
No 103
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]
Probab=98.50 E-value=9.5e-08 Score=116.44 Aligned_cols=127 Identities=27% Similarity=0.305 Sum_probs=110.4
Q ss_pred CHHHHHhCCCCccccCCccccCCCCCCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccC--CCCCcHHHHHHhcCCHH
Q 001476 1 MTELLVSHHGQKQTLQSPARKSSLGGVQKDLCLAVREGSLADVESALALLKKNGGNINSRN--IFGLTPLHSAIWRNQVP 78 (1071)
Q Consensus 1 Ive~LLe~ga~~~~~~~~~~~~~~~~g~TpLh~Aa~~G~~~~v~~iL~lLl~~Gadin~~d--~~G~TpLH~Aa~~g~~e 78 (1071)
+|++||.+|+++... +.+.+|||.+|..-|..+++. +|+.+|+.||.+. ..|..||++|+++||.+
T Consensus 839 vvelLl~~gankehr--------nvsDytPlsla~Sggy~~iI~----~llS~GseInSrtgSklgisPLmlatmngh~~ 906 (2131)
T KOG4369|consen 839 VVELLLNAGANKEHR--------NVSDYTPLSLARSGGYTKIIH----ALLSSGSEINSRTGSKLGISPLMLATMNGHQA 906 (2131)
T ss_pred HHHHHHHhhcccccc--------chhhcCchhhhcCcchHHHHH----HHhhcccccccccccccCcchhhhhhhccccH
Confidence 478999988885532 345679999999999988888 8889999999886 66899999999999999
Q ss_pred HHHHHHhcCCCCCCCCCCCCccccccccccccccchhhhhccccccccccCCCCCCc-ccCC
Q 001476 79 IVRRLLAAGADPDARDGESGWSSLHRALHFGHLAVASVLLQSGASITLEDCKSRTPV-DLLS 139 (1071)
Q Consensus 79 ivk~LL~~GAd~~~~d~~~G~TpL~~A~~~G~~~iv~lLl~~Ga~v~l~d~~G~tPL-dl~s 139 (1071)
.++.||+.|-|+|..-..+-+|+|-+|+..|+.+++.+||.+.+.+..+...|.||+ ..+|
T Consensus 907 at~~ll~~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~anvehRaktgltplme~As 968 (2131)
T KOG4369|consen 907 ATLSLLQPGSDINAQIETNRNTALTLALFQGRPEVVFLLLAAQANVEHRAKTGLTPLMEMAS 968 (2131)
T ss_pred HHHHHhcccchhccccccccccceeeccccCcchHHHHHHHHhhhhhhhcccCCcccchhhc
Confidence 999999999999987656788999999999999999999999999999999999997 3444
No 104
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]
Probab=98.45 E-value=7.6e-08 Score=117.26 Aligned_cols=128 Identities=30% Similarity=0.409 Sum_probs=113.7
Q ss_pred CCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCccccccc
Q 001476 26 GVQKDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRA 105 (1071)
Q Consensus 26 ~g~TpLh~Aa~~G~~~~v~~iL~lLl~~Gadin~~d~~G~TpLH~Aa~~g~~eivk~LL~~GAd~~~~d~~~G~TpL~~A 105 (1071)
.-.|+|-.||..|+.+.++ +|+..|+++..+|.-|.+||.+|+..||..+|+.||.+-++++.+..+.+.|+|.+|
T Consensus 756 n~~t~LT~acaggh~e~ve----llv~rganiehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSla 831 (2131)
T KOG4369|consen 756 NIKTNLTSACAGGHREEVE----LLVVRGANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLA 831 (2131)
T ss_pred cccccccccccCccHHHHH----HHHHhcccccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEe
Confidence 3468999999999999999 889999999999999999999999999999999999999999998768899999999
Q ss_pred cccccccchhhhhccccccccccCCCCCCcccCCCCceeeeccccccccceeeeccCCc
Q 001476 106 LHFGHLAVASVLLQSGASITLEDCKSRTPVDLLSGPVLQVVGSGYNSVATEVFSWGSGA 164 (1071)
Q Consensus 106 ~~~G~~~iv~lLl~~Ga~v~l~d~~G~tPLdl~sg~v~qa~~~~~~~~~g~VYsWGsN~ 164 (1071)
|..|+.+++++||.+|+.-..++....+|+.|++. .+|.-+..-+++-|+--
T Consensus 832 csggr~~vvelLl~~gankehrnvsDytPlsla~S-------ggy~~iI~~llS~GseI 883 (2131)
T KOG4369|consen 832 CSGGRTRVVELLLNAGANKEHRNVSDYTPLSLARS-------GGYTKIIHALLSSGSEI 883 (2131)
T ss_pred cCCCcchHHHHHHHhhccccccchhhcCchhhhcC-------cchHHHHHHHhhccccc
Confidence 99999999999999999999999999999988664 34444445667777433
No 105
>PHA03098 kelch-like protein; Provisional
Probab=98.40 E-value=2.3e-07 Score=113.12 Aligned_cols=92 Identities=15% Similarity=0.248 Sum_probs=79.1
Q ss_pred hcccCCCCCCCCCCcc--cccccccchhHHHHHHHHHHhhcCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhhhhhhhh
Q 001476 529 DFMFNDESNNMPSAID--KDDSGVRLAPSLKSLCENVAAQCLVEPRNALQLLEISDSLGADDLKKHCEDIAIRNLDYILT 606 (1071)
Q Consensus 529 dfmYtD~~~~~~~~~~--~~aAd~y~~~~LK~lCE~~l~~~~v~~~nv~~il~lA~~~~~~~Lk~~C~~f~~~nld~v~~ 606 (1071)
+||||+...-..+... ..+|+.|.++.|+.+|++.|..+ ++++|++.++++|+.|+|..|+++|.+|+..|+..|.
T Consensus 64 ~y~Ytg~~~i~~~~~~~ll~~A~~l~~~~l~~~C~~~l~~~-l~~~nc~~~~~~a~~~~~~~L~~~~~~~i~~nf~~v~- 141 (534)
T PHA03098 64 KYIYTGKINITSNNVKDILSIANYLIIDFLINLCINYIIKI-IDDNNCIDIYRFSFFYGCKKLYSAAYNYIRNNIELIY- 141 (534)
T ss_pred HHhcCCceEEcHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh-CCHhHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHh-
Confidence 8999995421111111 11899999999999999999997 9999999999999999999999999999999999999
Q ss_pred cccchhccccHHHHHHH
Q 001476 607 VSSHSFASASLDILADL 623 (1071)
Q Consensus 607 ~~~~~f~~l~~~~l~el 623 (1071)
.++.|..|+.+.|.+|
T Consensus 142 -~~~~f~~l~~~~l~~l 157 (534)
T PHA03098 142 -NDPDFIYLSKNELIKI 157 (534)
T ss_pred -cCchhhcCCHHHHHHH
Confidence 9999999998776666
No 106
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]
Probab=98.35 E-value=5e-07 Score=103.21 Aligned_cols=89 Identities=34% Similarity=0.357 Sum_probs=78.8
Q ss_pred chHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccC-CCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCcccccccc
Q 001476 28 QKDLCLAVREGSLADVESALALLKKNGGNINSRN-IFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRAL 106 (1071)
Q Consensus 28 ~TpLh~Aa~~G~~~~v~~iL~lLl~~Gadin~~d-~~G~TpLH~Aa~~g~~eivk~LL~~GAd~~~~d~~~G~TpL~~A~ 106 (1071)
...||-.++.|+++..- -|+..||++|..+ .-|.||||.|+..|...-+++|+-+|||++..| .+|+||+.+|.
T Consensus 134 srQLhasvRt~nlet~L----Rll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d-~~GmtP~~~AR 208 (669)
T KOG0818|consen 134 SKQLHSSVRTGNLETCL----RLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQD-SSGMTPVDYAR 208 (669)
T ss_pred HHHHHHHhhcccHHHHH----HHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCC-CCCCcHHHHHH
Confidence 45699999999988766 5678899999988 569999999999999999999999999999999 88999999999
Q ss_pred ccccccchhhhhccc
Q 001476 107 HFGHLAVASVLLQSG 121 (1071)
Q Consensus 107 ~~G~~~iv~lLl~~G 121 (1071)
..||.++++.|++.-
T Consensus 209 ~~gH~~laeRl~e~~ 223 (669)
T KOG0818|consen 209 QGGHHELAERLVEIQ 223 (669)
T ss_pred hcCchHHHHHHHHHH
Confidence 999999998888743
No 107
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=98.26 E-value=1.4e-06 Score=101.32 Aligned_cols=91 Identities=32% Similarity=0.332 Sum_probs=77.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCC--Ccc--cCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCccccccc
Q 001476 30 DLCLAVREGSLADVESALALLKKNGGN--INS--RNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRA 105 (1071)
Q Consensus 30 pLh~Aa~~G~~~~v~~iL~lLl~~Gad--in~--~d~~G~TpLH~Aa~~g~~eivk~LL~~GAd~~~~d~~~G~TpL~~A 105 (1071)
.|.-|....++..+- +|+.+|.. +|. -+.+|+|+||+||..|++.+.++|+.+|+|+..+| ..|+|+|.||
T Consensus 627 qLl~A~~~~Dl~t~~----lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rd-a~g~t~l~ya 701 (749)
T KOG0705|consen 627 QLLRAVAAEDLQTAI----LLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARD-AHGRTALFYA 701 (749)
T ss_pred HHHHHHHHHHHHHHH----HHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecc-cCCchhhhhH
Confidence 366677666655555 77788853 333 34678999999999999999999999999999999 8899999999
Q ss_pred cccccccchhhhhccccccc
Q 001476 106 LHFGHLAVASVLLQSGASIT 125 (1071)
Q Consensus 106 ~~~G~~~iv~lLl~~Ga~v~ 125 (1071)
.+.|..+|+.+|+++|+..+
T Consensus 702 r~a~sqec~d~llq~gcp~e 721 (749)
T KOG0705|consen 702 RQAGSQECIDVLLQYGCPDE 721 (749)
T ss_pred hhcccHHHHHHHHHcCCCcc
Confidence 99999999999999998654
No 108
>PF13606 Ank_3: Ankyrin repeat
Probab=98.23 E-value=1.2e-06 Score=64.71 Aligned_cols=30 Identities=47% Similarity=0.587 Sum_probs=26.3
Q ss_pred CCCcHHHHHHhcCCHHHHHHHHhcCCCCCC
Q 001476 63 FGLTPLHSAIWRNQVPIVRRLLAAGADPDA 92 (1071)
Q Consensus 63 ~G~TpLH~Aa~~g~~eivk~LL~~GAd~~~ 92 (1071)
+|+||||+||..|+.+++++||++|+|+|.
T Consensus 1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn~ 30 (30)
T PF13606_consen 1 NGNTPLHLAASNGNIEIVKYLLEHGADVNA 30 (30)
T ss_pred CCCCHHHHHHHhCCHHHHHHHHHcCCCCCC
Confidence 588999999999999999999999998873
No 109
>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....
Probab=98.21 E-value=1.5e-06 Score=65.29 Aligned_cols=32 Identities=53% Similarity=0.623 Sum_probs=29.7
Q ss_pred CCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCC
Q 001476 63 FGLTPLHSAIWRNQVPIVRRLLAAGADPDARD 94 (1071)
Q Consensus 63 ~G~TpLH~Aa~~g~~eivk~LL~~GAd~~~~d 94 (1071)
+|+||||+||..|+.+++++||++|++++.+|
T Consensus 1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d 32 (33)
T PF00023_consen 1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARD 32 (33)
T ss_dssp TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBC
T ss_pred CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCC
Confidence 58999999999999999999999999999887
No 110
>KOG0522 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.15 E-value=1.5e-06 Score=100.90 Aligned_cols=89 Identities=36% Similarity=0.484 Sum_probs=77.3
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCcccccccccc
Q 001476 29 KDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRALHF 108 (1071)
Q Consensus 29 TpLh~Aa~~G~~~~v~~iL~lLl~~Gadin~~d~~G~TpLH~Aa~~g~~eivk~LL~~GAd~~~~d~~~G~TpL~~A~~~ 108 (1071)
-|||+++...+.+-+...+ +.+....|+.+|..|+||||+|+..|+.+.++.|+.+||++..+| +.||+|||.|+..
T Consensus 22 ~~lh~~~~~~~~~sl~~el--~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN-~~gWs~L~EAv~~ 98 (560)
T KOG0522|consen 22 KPLHWAVVTTDSDSLEQEL--LAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKN-NEGWSPLHEAVST 98 (560)
T ss_pred cccchhhhccchhhHHHHH--hhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccc-cccccHHHHHHHc
Confidence 4699999998887776322 334567899999999999999999999999999999999999999 8999999999999
Q ss_pred ccccchhhhhcc
Q 001476 109 GHLAVASVLLQS 120 (1071)
Q Consensus 109 G~~~iv~lLl~~ 120 (1071)
|+.+++..++.+
T Consensus 99 g~~q~i~~vlr~ 110 (560)
T KOG0522|consen 99 GNEQIITEVLRH 110 (560)
T ss_pred CCHHHHHHHHHH
Confidence 999887766653
No 111
>KOG4325 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.07 E-value=7.5e-06 Score=81.23 Aligned_cols=58 Identities=24% Similarity=0.443 Sum_probs=42.8
Q ss_pred CCCCccchhHHHHHHHHHHHHHHHHHHHHHHHCCCCC--CHHHHHHhhhHHHHHHHHHHc
Q 001476 688 EPKADANQEISKQVRALRKKLQQIEMLEVKLSNGHIL--DEQQIAKLQTKSVLERSLAEL 745 (1071)
Q Consensus 688 ~~~~~~~~~~~k~~r~l~kkl~~ie~l~~k~~~g~~l--~~~q~~k~~~~~~~~~~l~~l 745 (1071)
++++++..+.+|+||+|+||||+.|+|++|+++|+.- .++|++||.....++++|+.+
T Consensus 151 ~~dsaa~edkaKkIkaLKKKiR~tEalQQkiaagdln~~qkEkfeKLaerRa~eeaLED~ 210 (212)
T KOG4325|consen 151 PGDSAAGEDKAKKIKALKKKIRLTEALQQKIAAGDLNPEQKEKFEKLAERRAEEEALEDK 210 (212)
T ss_pred CCcccchhhHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3455667899999999999999999999999999843 344455555555555555443
No 112
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]
Probab=97.90 E-value=5.4e-06 Score=95.02 Aligned_cols=91 Identities=30% Similarity=0.368 Sum_probs=80.5
Q ss_pred CcccCCCCCcH------HHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCccccccccccccccchhhhhccccccccccCC
Q 001476 57 INSRNIFGLTP------LHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRALHFGHLAVASVLLQSGASITLEDCK 130 (1071)
Q Consensus 57 in~~d~~G~Tp------LH~Aa~~g~~eivk~LL~~GAd~~~~d~~~G~TpL~~A~~~G~~~iv~lLl~~Ga~v~l~d~~ 130 (1071)
.-.+|.+|.|+ ||.+++.++.+.+-.||..||++|.-+.+.|.||||.|++.|+..-+++|+-||+++...|.+
T Consensus 120 ~~~rDdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~ 199 (669)
T KOG0818|consen 120 LPCRDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSS 199 (669)
T ss_pred CCCCCcchhhHHHHHHHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCC
Confidence 44667777664 899999999999999999999999999889999999999999999999999999999999999
Q ss_pred CCCCcccCCCCceeeecccccccc
Q 001476 131 SRTPVDLLSGPVLQVVGSGYNSVA 154 (1071)
Q Consensus 131 G~tPLdl~sg~v~qa~~~~~~~~~ 154 (1071)
|.+|++++ ..++|+.++
T Consensus 200 GmtP~~~A-------R~~gH~~la 216 (669)
T KOG0818|consen 200 GMTPVDYA-------RQGGHHELA 216 (669)
T ss_pred CCcHHHHH-------HhcCchHHH
Confidence 99999883 445565554
No 113
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]
Probab=97.83 E-value=1.1e-05 Score=93.19 Aligned_cols=100 Identities=30% Similarity=0.348 Sum_probs=56.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHhcCC--CCCCCCCCCCcccccccccc
Q 001476 31 LCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGA--DPDARDGESGWSSLHRALHF 108 (1071)
Q Consensus 31 Lh~Aa~~G~~~~v~~iL~lLl~~Gadin~~d~~G~TpLH~Aa~~g~~eivk~LL~~GA--d~~~~d~~~G~TpL~~A~~~ 108 (1071)
|..|+..+++-.++ .+..+|.++-.++.+.+|.||||+..|+-++|+|||++|. -+++.| +.|.|+||.|+..
T Consensus 870 il~av~~~D~~klq----E~h~~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~d-e~get~lhkaa~~ 944 (1004)
T KOG0782|consen 870 ILRAVLSSDLMKLQ----ETHLNGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMAD-ETGETALHKAACQ 944 (1004)
T ss_pred HHHHHHhccHHHHH----HHHhcCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHh-hhhhHHHHHHHHh
Confidence 44555555544444 3334555555555555666666666666666666666653 244455 5566666666655
Q ss_pred ccccchhhhhccccccccccCCCCCCc
Q 001476 109 GHLAVASVLLQSGASITLEDCKSRTPV 135 (1071)
Q Consensus 109 G~~~iv~lLl~~Ga~v~l~d~~G~tPL 135 (1071)
++..+..+|++.|+++...|..|.||-
T Consensus 945 ~~r~vc~~lvdagasl~ktd~kg~tp~ 971 (1004)
T KOG0782|consen 945 RNRAVCQLLVDAGASLRKTDSKGKTPQ 971 (1004)
T ss_pred cchHHHHHHHhcchhheecccCCCChH
Confidence 666666666666666655555555553
No 114
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]
Probab=97.82 E-value=1.1e-05 Score=93.21 Aligned_cols=91 Identities=23% Similarity=0.252 Sum_probs=83.1
Q ss_pred CCCchHHHHHHHcCCHHHHHHHHHHHHhCCCC--CcccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCcccc
Q 001476 25 GGVQKDLCLAVREGSLADVESALALLKKNGGN--INSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSL 102 (1071)
Q Consensus 25 ~~g~TpLh~Aa~~G~~~~v~~iL~lLl~~Gad--in~~d~~G~TpLH~Aa~~g~~eivk~LL~~GAd~~~~d~~~G~TpL 102 (1071)
.+..|.||+|+..|+.++|+ +++++|-. +++.|..|.|+||-|+..++..+|.+|+++||.+...| ..|.||-
T Consensus 897 ~~~~sllh~a~~tg~~eivk----yildh~p~elld~~de~get~lhkaa~~~~r~vc~~lvdagasl~ktd-~kg~tp~ 971 (1004)
T KOG0782|consen 897 PDHCSLLHYAAKTGNGEIVK----YILDHGPSELLDMADETGETALHKAACQRNRAVCQLLVDAGASLRKTD-SKGKTPQ 971 (1004)
T ss_pred cchhhHHHHHHhcCChHHHH----HHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHHHHHHhcchhheecc-cCCCChH
Confidence 35689999999999999999 78888853 67888999999999999999999999999999999999 8899999
Q ss_pred ccccccccccchhhhhcc
Q 001476 103 HRALHFGHLAVASVLLQS 120 (1071)
Q Consensus 103 ~~A~~~G~~~iv~lLl~~ 120 (1071)
..|.+.|+.+++.+|-..
T Consensus 972 eraqqa~d~dlaayle~r 989 (1004)
T KOG0782|consen 972 ERAQQAGDPDLAAYLESR 989 (1004)
T ss_pred HHHHhcCCchHHHHHhhh
Confidence 999999999999988754
No 115
>PHA02790 Kelch-like protein; Provisional
Probab=97.81 E-value=8.3e-06 Score=98.37 Aligned_cols=123 Identities=10% Similarity=0.064 Sum_probs=89.1
Q ss_pred eEEEEEe---CCCCccCCCCCCCCCcccc---CCCcchhhhhhhcccCCCCCCCCCCccc--ccccccchhHHHHHHHHH
Q 001476 492 HLLIVGS---LYHPIYPPNVAKNPQKLKL---NGRNDLEEFYEDFMFNDESNNMPSAIDK--DDSGVRLAPSLKSLCENV 563 (1071)
Q Consensus 492 HtlaL~s---~~~~v~~wG~~~~gq~g~l---~~~~~~~el~edfmYtD~~~~~~~~~~~--~aAd~y~~~~LK~lCE~~ 563 (1071)
|=++|++ .+..+|+-|+.+..+.-.+ ....+.-+..-+|+||....=..+.++. .||+.+.++.++..|++-
T Consensus 36 HR~VLAa~S~YFraMF~~~~~Es~~~v~~~~~~v~~~~l~~lldy~YTg~l~it~~nV~~ll~aA~~Lqi~~v~~~C~~f 115 (480)
T PHA02790 36 NSTILKKLSPYFRTHLRQKYTKNKDPVTRVCLDLDIHSLTSIVIYSYTGKVYIDSHNVVNLLRASILTSVEFIIYTCINF 115 (480)
T ss_pred ehhhhhhcCHHHHHHhcCCccccccceEEEecCcCHHHHHHHHHhheeeeEEEecccHHHHHHHHHHhChHHHHHHHHHH
Confidence 4445543 2345677788776432111 1222222333489999843211111111 189999999999999999
Q ss_pred HhhcCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhhhhhhhhccc--chhccccH
Q 001476 564 AAQCLVEPRNALQLLEISDSLGADDLKKHCEDIAIRNLDYILTVSS--HSFASASL 617 (1071)
Q Consensus 564 l~~~~v~~~nv~~il~lA~~~~~~~Lk~~C~~f~~~nld~v~~~~~--~~f~~l~~ 617 (1071)
|.+. |+++|.+.|+.+|+.|+|.+|++.+.+|+.+||-.|. .+ +.|..|+.
T Consensus 116 L~~~-l~~~NCl~i~~~A~~y~~~~L~~~a~~fi~~nF~~v~--~~~~~ef~~L~~ 168 (480)
T PHA02790 116 ILRD-FRKEYCVECYMMGIEYGLSNLLCHTKDFIAKHFLELE--DDIIDNFDYLSM 168 (480)
T ss_pred HHhh-CCcchHHHHHHHHHHhCHHHHHHHHHHHHHHhHHHHh--cccchhhhhCCH
Confidence 9998 9999999999999999999999999999999999998 54 78888875
No 116
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=97.79 E-value=3.7e-05 Score=89.83 Aligned_cols=82 Identities=24% Similarity=0.298 Sum_probs=68.3
Q ss_pred HHHHhCCCCccccCCccccCCCCCCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHH
Q 001476 3 ELLVSHHGQKQTLQSPARKSSLGGVQKDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRR 82 (1071)
Q Consensus 3 e~LLe~ga~~~~~~~~~~~~~~~~g~TpLh~Aa~~G~~~~v~~iL~lLl~~Gadin~~d~~G~TpLH~Aa~~g~~eivk~ 82 (1071)
-+||.||....-. ......+|.|+||+||+.|+....+ +|+-+|+|+-.+|..|+|+|.||-..|..+|+..
T Consensus 641 ~lLLAhg~~~e~~----~t~~~~~grt~LHLa~~~gnVvl~Q----LLiWyg~dv~~rda~g~t~l~yar~a~sqec~d~ 712 (749)
T KOG0705|consen 641 ILLLAHGSREEVN----ETCGEGDGRTALHLAARKGNVVLAQ----LLIWYGVDVMARDAHGRTALFYARQAGSQECIDV 712 (749)
T ss_pred HHHHhccCchhhh----ccccCCCCcchhhhhhhhcchhHHH----HHHHhCccceecccCCchhhhhHhhcccHHHHHH
Confidence 3677877543321 1223467899999999999999888 8999999999999999999999999999999999
Q ss_pred HHhcCCCCCC
Q 001476 83 LLAAGADPDA 92 (1071)
Q Consensus 83 LL~~GAd~~~ 92 (1071)
||.+|+-...
T Consensus 713 llq~gcp~e~ 722 (749)
T KOG0705|consen 713 LLQYGCPDEC 722 (749)
T ss_pred HHHcCCCccc
Confidence 9999976543
No 117
>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]
Probab=97.79 E-value=1.5e-05 Score=82.02 Aligned_cols=67 Identities=33% Similarity=0.360 Sum_probs=63.0
Q ss_pred CCCCcccCCCCCcHHHHHHhcCCHHHHHHHHhcC-CCCCCCCCCCCccccccccccccccchhhhhccc
Q 001476 54 GGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAG-ADPDARDGESGWSSLHRALHFGHLAVASVLLQSG 121 (1071)
Q Consensus 54 Gadin~~d~~G~TpLH~Aa~~g~~eivk~LL~~G-Ad~~~~d~~~G~TpL~~A~~~G~~~iv~lLl~~G 121 (1071)
+.+||.+|.+||||||.|++.|..+.|.+||.+| +.+...| ..|.+++.+|-+.|+.+++..|.++-
T Consensus 2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d-~ssldaaqlaek~g~~~fvh~lfe~~ 69 (223)
T KOG2384|consen 2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTD-ESSLDAAQLAEKGGAQAFVHSLFEND 69 (223)
T ss_pred CCCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccc-cccchHHHHHHhcChHHHHHHHHHHh
Confidence 5789999999999999999999999999999999 8999999 89999999999999999999998863
No 118
>PHA02713 hypothetical protein; Provisional
Probab=97.77 E-value=2e-05 Score=96.84 Aligned_cols=93 Identities=14% Similarity=0.259 Sum_probs=78.4
Q ss_pred hhhcccCCCCCCCCCCcc-cccccccchhHHHHHHHHHHhhcCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhhhhhhh
Q 001476 527 YEDFMFNDESNNMPSAID-KDDSGVRLAPSLKSLCENVAAQCLVEPRNALQLLEISDSLGADDLKKHCEDIAIRNLDYIL 605 (1071)
Q Consensus 527 ~edfmYtD~~~~~~~~~~-~~aAd~y~~~~LK~lCE~~l~~~~v~~~nv~~il~lA~~~~~~~Lk~~C~~f~~~nld~v~ 605 (1071)
.-+|+||..... ....+ ..||+.+.+++|+.+|+.-|.++ ++++|++.|+.+|..++|..|+++|.+|+.+||..|.
T Consensus 82 ll~y~Yt~~i~~-~nv~~ll~aA~~lqi~~l~~~C~~~l~~~-l~~~NCl~i~~~~~~~~~~~L~~~a~~~i~~~f~~v~ 159 (557)
T PHA02713 82 IVQYLYNRHISS-MNVIDVLKCADYLLIDDLVTDCESYIKDY-TNHDTCIYMYHRLYEMSHIPIVKYIKRMLMSNIPTLI 159 (557)
T ss_pred HHHHhcCCCCCH-HHHHHHHHHHHHHCHHHHHHHHHHHHHhh-CCccchHHHHHHHHhccchHHHHHHHHHHHHHHHHHh
Confidence 348999974210 11001 11899999999999999999997 9999999999999999999999999999999999999
Q ss_pred hcccchhccccHHHHHHH
Q 001476 606 TVSSHSFASASLDILADL 623 (1071)
Q Consensus 606 ~~~~~~f~~l~~~~l~el 623 (1071)
.++.|..|+.+-|.+|
T Consensus 160 --~~~ef~~L~~~~l~~l 175 (557)
T PHA02713 160 --TTDAFKKTVFEILFDI 175 (557)
T ss_pred --CChhhhhCCHHHHHHH
Confidence 9999999998776666
No 119
>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....
Probab=97.68 E-value=5.4e-05 Score=56.84 Aligned_cols=33 Identities=33% Similarity=0.417 Sum_probs=30.2
Q ss_pred CCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCC
Q 001476 26 GVQKDLCLAVREGSLADVESALALLKKNGGNINSRNI 62 (1071)
Q Consensus 26 ~g~TpLh~Aa~~G~~~~v~~iL~lLl~~Gadin~~d~ 62 (1071)
+|.||||+||..|+.++++ +|+++|+++|.+|.
T Consensus 1 dG~TpLh~A~~~~~~~~v~----~Ll~~ga~~~~~d~ 33 (33)
T PF00023_consen 1 DGNTPLHYAAQRGHPDIVK----LLLKHGADINARDN 33 (33)
T ss_dssp TSBBHHHHHHHTTCHHHHH----HHHHTTSCTTCBCT
T ss_pred CcccHHHHHHHHHHHHHHH----HHHHCcCCCCCCCC
Confidence 4889999999999999999 88899999999873
No 120
>PF13606 Ank_3: Ankyrin repeat
Probab=97.66 E-value=5e-05 Score=56.10 Aligned_cols=30 Identities=27% Similarity=0.443 Sum_probs=27.4
Q ss_pred CCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcc
Q 001476 26 GVQKDLCLAVREGSLADVESALALLKKNGGNINS 59 (1071)
Q Consensus 26 ~g~TpLh~Aa~~G~~~~v~~iL~lLl~~Gadin~ 59 (1071)
.|+||||+||..|+.++++ +|+++|+|+|.
T Consensus 1 ~G~T~Lh~A~~~g~~e~v~----~Ll~~gadvn~ 30 (30)
T PF13606_consen 1 NGNTPLHLAASNGNIEIVK----YLLEHGADVNA 30 (30)
T ss_pred CCCCHHHHHHHhCCHHHHH----HHHHcCCCCCC
Confidence 4789999999999999999 88899999984
No 121
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=97.62 E-value=3.9e-05 Score=96.24 Aligned_cols=90 Identities=33% Similarity=0.361 Sum_probs=76.9
Q ss_pred CCCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCcccccc
Q 001476 25 GGVQKDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHR 104 (1071)
Q Consensus 25 ~~g~TpLh~Aa~~G~~~~v~~iL~lLl~~Gadin~~d~~G~TpLH~Aa~~g~~eivk~LL~~GAd~~~~d~~~G~TpL~~ 104 (1071)
..|.|+||.|+..|..-.++ +|+++|+++|.+|..|+||||.+...|+...+.+|+++|+++++.+ ..|.++|++
T Consensus 654 ~~~~s~lh~a~~~~~~~~~e----~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~-~~~~~~l~~ 728 (785)
T KOG0521|consen 654 CIGCSLLHVAVGTGDSGAVE----LLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFD-PDGKLPLDI 728 (785)
T ss_pred hcccchhhhhhccchHHHHH----HHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccccccC-ccCcchhhH
Confidence 34678999999999888777 8889999999999999999999999999999999999999999999 889999999
Q ss_pred ccccccccchhhhhc
Q 001476 105 ALHFGHLAVASVLLQ 119 (1071)
Q Consensus 105 A~~~G~~~iv~lLl~ 119 (1071)
|....+.+++.+|.-
T Consensus 729 a~~~~~~d~~~l~~l 743 (785)
T KOG0521|consen 729 AMEAANADIVLLLRL 743 (785)
T ss_pred HhhhccccHHHHHhh
Confidence 977766676655543
No 122
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=97.61 E-value=4.3e-05 Score=88.48 Aligned_cols=49 Identities=33% Similarity=0.476 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHhhhHHHHHHHHHHc
Q 001476 697 ISKQVRALRKKLQQIEMLEVKLSNGHILDEQQIAKLQTKSVLERSLAEL 745 (1071)
Q Consensus 697 ~~k~~r~l~kkl~~ie~l~~k~~~g~~l~~~q~~k~~~~~~~~~~l~~l 745 (1071)
.++|||+|.||||+||.|++++..||.|+..|+.||+++.+|.+||++|
T Consensus 510 ~e~ki~sl~~~lRaIe~lker~~~~eele~~qv~kietee~VlsElk~l 558 (561)
T COG5354 510 DEDKIRSLLKKLRAIEALKERMRSGEELEVIQVNKIETEEEVLSELKEL 558 (561)
T ss_pred HHHHHHHHHHHhhhhhcchhhcccccchhhhhhhhhhhHHHHHHHhhhc
Confidence 3449999999999999999999999999999999999999999999998
No 123
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=97.61 E-value=8.6e-05 Score=83.17 Aligned_cols=87 Identities=28% Similarity=0.308 Sum_probs=70.2
Q ss_pred chHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCccccccccc
Q 001476 28 QKDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRALH 107 (1071)
Q Consensus 28 ~TpLh~Aa~~G~~~~v~~iL~lLl~~Gadin~~d~~G~TpLH~Aa~~g~~eivk~LL~~GAd~~~~d~~~G~TpL~~A~~ 107 (1071)
.--|++||+.|+.+.|+ .|++.|++||.+|.+...||.+|+..||.++|++||++||-...-. ..|.-.+.-|.
T Consensus 37 f~elceacR~GD~d~v~----~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdt-f~G~RC~YgaL- 110 (516)
T KOG0511|consen 37 FGELCEACRAGDVDRVR----YLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDT-FDGDRCHYGAL- 110 (516)
T ss_pred hHHHHHHhhcccHHHHH----HHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccc-cCcchhhhhhh-
Confidence 34599999999999999 8888999999999999999999999999999999999998766544 66665543333
Q ss_pred cccccchhhhhcccc
Q 001476 108 FGHLAVASVLLQSGA 122 (1071)
Q Consensus 108 ~G~~~iv~lLl~~Ga 122 (1071)
+..+-+.|+.+..
T Consensus 111 --nd~IR~mllsydi 123 (516)
T KOG0511|consen 111 --NDRIRRMLLSYDI 123 (516)
T ss_pred --hHHHHHHHHHHHH
Confidence 3345566776643
No 124
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=97.33 E-value=0.00015 Score=81.85 Aligned_cols=115 Identities=19% Similarity=0.212 Sum_probs=87.7
Q ss_pred CCCCCCCCCcc-ccCCCcchhhhhh--hcccCCC--CCCCCCCcccc---cccccchhHHHHHHHHHHhhcCCCcccHHH
Q 001476 505 PPNVAKNPQKL-KLNGRNDLEEFYE--DFMFNDE--SNNMPSAIDKD---DSGVRLAPSLKSLCENVAAQCLVEPRNALQ 576 (1071)
Q Consensus 505 ~wG~~~~gq~g-~l~~~~~~~el~e--dfmYtD~--~~~~~~~~~~~---aAd~y~~~~LK~lCE~~l~~~~v~~~nv~~ 576 (1071)
--||.+..|.. +++.. ..+.|.. .||||.. ....+.++-.+ +|.+|+...|..-.-+-|++. +..+|||.
T Consensus 75 YgGm~Es~q~~ipLq~t-~~eAF~~lLrYiYtg~~~l~~~~ed~lld~LslAh~Ygf~~Le~aiSeYl~~i-L~~~NvCm 152 (620)
T KOG4350|consen 75 YGGMQESHQQLIPLQET-NSEAFRALLRYIYTGKIDLAGVEEDILLDYLSLAHRYGFIQLETAISEYLKEI-LKNENVCM 152 (620)
T ss_pred hhhhhhhhhcccccccc-cHHHHHHHHHHHhhcceecccchHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-Hcccceee
Confidence 34666655433 33322 2333333 7999972 22222222222 899999999998887778886 99999999
Q ss_pred HHHHHHhcCchhHHHHHHHHHHhhhhhhhhcccchhccccHHHHHHH
Q 001476 577 LLEISDSLGADDLKKHCEDIAIRNLDYILTVSSHSFASASLDILADL 623 (1071)
Q Consensus 577 il~lA~~~~~~~Lk~~C~~f~~~nld~v~~~~~~~f~~l~~~~l~el 623 (1071)
|++.|-.|+-.+|-.+|+-|+-+|.|.++ ..++|..|+.+-|+||
T Consensus 153 ifdaA~ly~l~~Lt~~C~mfmDrnA~~lL--~~~sFn~LSk~sL~e~ 197 (620)
T KOG4350|consen 153 IFDAAYLYQLTDLTDYCMMFMDRNADQLL--EDPSFNRLSKDSLKEL 197 (620)
T ss_pred eeeHHHHhcchHHHHHHHHHHhcCHHhhh--cCcchhhhhHHHHHHH
Confidence 99999999999999999999999999999 9999999998888887
No 125
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=97.21 E-value=0.00024 Score=81.66 Aligned_cols=75 Identities=25% Similarity=0.291 Sum_probs=69.8
Q ss_pred CCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCccccccccccccccchhhhhcc-ccccccccCCCCCCccc
Q 001476 62 IFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRALHFGHLAVASVLLQS-GASITLEDCKSRTPVDL 137 (1071)
Q Consensus 62 ~~G~TpLH~Aa~~g~~eivk~LL~~GAd~~~~d~~~G~TpL~~A~~~G~~~iv~lLl~~-Ga~v~l~d~~G~tPLdl 137 (1071)
..+..++++|+..|.+..++.++-.|.|+..+| .+.+|+||.|+..|+.+++++|++. +.+++.+|..|++|++=
T Consensus 504 ~~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~D-yD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDd 579 (622)
T KOG0506|consen 504 NDTVINVMYAAKNGDLSALRRFALQGMDLETKD-YDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDD 579 (622)
T ss_pred ccchhhhhhhhhcCCHHHHHHHHHhcccccccc-cccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchH
Confidence 446779999999999999999999999999999 8899999999999999999999986 78999999999999964
No 126
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.11 E-value=0.00056 Score=84.22 Aligned_cols=120 Identities=13% Similarity=0.244 Sum_probs=92.6
Q ss_pred CCccCCCCCCCCCccccCC--CcchhhhhhhcccCCCCCCCCCCcc--cccccccchhHHHHHHHHHHhhcCCCcccHHH
Q 001476 501 HPIYPPNVAKNPQKLKLNG--RNDLEEFYEDFMFNDESNNMPSAID--KDDSGVRLAPSLKSLCENVAAQCLVEPRNALQ 576 (1071)
Q Consensus 501 ~~v~~wG~~~~gq~g~l~~--~~~~~el~edfmYtD~~~~~~~~~~--~~aAd~y~~~~LK~lCE~~l~~~~v~~~nv~~ 576 (1071)
..+|+.++.+..+...... +.+.-+...+|+||..+.-..+.++ ..+|+.+.++.+...|-+-|.+. ++++|...
T Consensus 63 raMFt~~l~e~~~~~i~l~~v~~~~l~~ll~y~Yt~~i~i~~~nVq~ll~aA~~lQi~~v~~~C~~fL~~~-l~~~Nclg 141 (571)
T KOG4441|consen 63 RAMFTSGLKESKQKEINLEGVDPETLELLLDYAYTGKLEISEDNVQELLEAASLLQIPEVVDACCEFLESQ-LDPSNCLG 141 (571)
T ss_pred HHHhcCCcccccceEEEEecCCHHHHHHHHHHhhcceEEechHhHHHHHHHHHHhhhHHHHHHHHHHHHhc-CCHHHHHH
Confidence 4466777777776532222 2233334458999984321111111 12899999999999999999998 99999999
Q ss_pred HHHHHHhcCchhHHHHHHHHHHhhhhhhhhcccchhccccHHHHHHH
Q 001476 577 LLEISDSLGADDLKKHCEDIAIRNLDYILTVSSHSFASASLDILADL 623 (1071)
Q Consensus 577 il~lA~~~~~~~Lk~~C~~f~~~nld~v~~~~~~~f~~l~~~~l~el 623 (1071)
|..+|+.|+|.+|.+....|+.+||..|. .++.|..|+.+-+.+|
T Consensus 142 i~~~a~~~~~~~L~~~a~~~i~~~F~~v~--~~eefl~L~~~~l~~l 186 (571)
T KOG4441|consen 142 IRRFAELHSCTELLEVADEYILQHFAEVS--KTEEFLLLSLEELIGL 186 (571)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHHHh--ccHHhhCCCHHHHHhh
Confidence 99999999999999999999999999999 9999999998665555
No 127
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=97.01 E-value=0.00044 Score=87.06 Aligned_cols=88 Identities=32% Similarity=0.391 Sum_probs=79.5
Q ss_pred hCCCCCcccC--CCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCccccccccccccccchhhhhccccccccccC
Q 001476 52 KNGGNINSRN--IFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRALHFGHLAVASVLLQSGASITLEDC 129 (1071)
Q Consensus 52 ~~Gadin~~d--~~G~TpLH~Aa~~g~~eivk~LL~~GAd~~~~d~~~G~TpL~~A~~~G~~~iv~lLl~~Ga~v~l~d~ 129 (1071)
.+++++|..+ ..|.|+||.|+.++..-++++||++|+++|..| ..|+||||.+...|+...+.+|++.|++.++.+.
T Consensus 642 ~~~~~~n~~~~~~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d-~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~ 720 (785)
T KOG0521|consen 642 AHGCCENWPVVLCIGCSLLHVAVGTGDSGAVELLLQNGADVNALD-SKGRTPLHHATASGHTSIACLLLKRGADPNAFDP 720 (785)
T ss_pred cchhhhccchhhhcccchhhhhhccchHHHHHHHHhcCCcchhhh-ccCCCcchhhhhhcccchhhhhccccccccccCc
Confidence 3556666543 678999999999999999999999999999999 8899999999999999999999999999999999
Q ss_pred CCCCCcccCCC
Q 001476 130 KSRTPVDLLSG 140 (1071)
Q Consensus 130 ~G~tPLdl~sg 140 (1071)
+|..+++.+.-
T Consensus 721 ~~~~~l~~a~~ 731 (785)
T KOG0521|consen 721 DGKLPLDIAME 731 (785)
T ss_pred cCcchhhHHhh
Confidence 99999987644
No 128
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.01 E-value=0.00048 Score=84.73 Aligned_cols=116 Identities=22% Similarity=0.234 Sum_probs=92.0
Q ss_pred CCCCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCC-------------
Q 001476 24 LGGVQKDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADP------------- 90 (1071)
Q Consensus 24 ~~~g~TpLh~Aa~~G~~~~v~~iL~lLl~~Gadin~~d~~G~TpLH~Aa~~g~~eivk~LL~~GAd~------------- 90 (1071)
...+......|+..|+.-.|+.+++.-.....|+|++|..|+++||+|..+.+.+++++|+++....
T Consensus 22 l~~~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~gdALL~aI~~~~v 101 (822)
T KOG3609|consen 22 LNEGEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEEGDALLLAIAVGSV 101 (822)
T ss_pred cchhhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCccccchHHHHHHHHHHH
Confidence 3456677899999999999998777544444789999999999999999999999999999874211
Q ss_pred ----------------------CCCCCCCCccccccccccccccchhhhhccccccccccCCCCCCcccCC
Q 001476 91 ----------------------DARDGESGWSSLHRALHFGHLAVASVLLQSGASITLEDCKSRTPVDLLS 139 (1071)
Q Consensus 91 ----------------------~~~d~~~G~TpL~~A~~~G~~~iv~lLl~~Ga~v~l~d~~G~tPLdl~s 139 (1071)
+......+.|||.+|++.++.+|+++|+..|+.+.......+.+..+..
T Consensus 102 ~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~PH~~~C~C~~C~~ 172 (822)
T KOG3609|consen 102 PLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPIPHDIRCECKTCKR 172 (822)
T ss_pred HHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCCCcccccCchHhhh
Confidence 1111135789999999999999999999999998876666666665543
No 129
>KOG0522 consensus Ankyrin repeat protein [General function prediction only]
Probab=96.97 E-value=0.0012 Score=77.56 Aligned_cols=58 Identities=28% Similarity=0.409 Sum_probs=53.6
Q ss_pred CCCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHhc
Q 001476 25 GGVQKDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAA 86 (1071)
Q Consensus 25 ~~g~TpLh~Aa~~G~~~~v~~iL~lLl~~Gadin~~d~~G~TpLH~Aa~~g~~eivk~LL~~ 86 (1071)
..|.||||+|++.|+...++ +|+.+|+++-.+|..|++|||-|+..|+..++..+|.+
T Consensus 53 ~~g~TpLhlAV~Lg~~~~a~----~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~q~i~~vlr~ 110 (560)
T KOG0522|consen 53 PPGRTPLHLAVRLGHVEAAR----ILLSAGADVSIKNNEGWSPLHEAVSTGNEQIITEVLRH 110 (560)
T ss_pred CCCCccHHHHHHhcCHHHHH----HHHhcCCCccccccccccHHHHHHHcCCHHHHHHHHHH
Confidence 35689999999999999999 88999999999999999999999999999998888765
No 130
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=96.96 E-value=0.00047 Score=77.42 Aligned_cols=68 Identities=28% Similarity=0.263 Sum_probs=61.2
Q ss_pred cHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCccccccccccccccchhhhhccccccccccCCCCCC
Q 001476 66 TPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRALHFGHLAVASVLLQSGASITLEDCKSRTP 134 (1071)
Q Consensus 66 TpLH~Aa~~g~~eivk~LL~~GAd~~~~d~~~G~TpL~~A~~~G~~~iv~lLl~~Ga~v~l~d~~G~tP 134 (1071)
--|..||+.|..+.|++|++.|.++|.+| .....||.+|+-.||.+++++|+++||.+......|..+
T Consensus 38 ~elceacR~GD~d~v~~LVetgvnVN~vD-~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~RC 105 (516)
T KOG0511|consen 38 GELCEACRAGDVDRVRYLVETGVNVNAVD-RFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDRC 105 (516)
T ss_pred HHHHHHhhcccHHHHHHHHHhCCCcchhh-cccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcchh
Confidence 36999999999999999999999999999 889999999999999999999999999886555555443
No 131
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=96.63 E-value=0.0022 Score=66.61 Aligned_cols=90 Identities=19% Similarity=0.214 Sum_probs=74.1
Q ss_pred hcccCCCCCCCCCCc----ccccccccchhHHHHHHHHHHhhcCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhhhhhh
Q 001476 529 DFMFNDESNNMPSAI----DKDDSGVRLAPSLKSLCENVAAQCLVEPRNALQLLEISDSLGADDLKKHCEDIAIRNLDYI 604 (1071)
Q Consensus 529 dfmYtD~~~~~~~~~----~~~aAd~y~~~~LK~lCE~~l~~~~v~~~nv~~il~lA~~~~~~~Lk~~C~~f~~~nld~v 604 (1071)
..||||..+-...++ ....|.||.++-||..||.-+-.. +.|+|.+.+.++|+..++..|..+|.++|....|..
T Consensus 123 RWIYTDEidfk~dD~~L~el~e~An~FqLe~Lke~C~k~l~a~-l~V~NCIk~Ye~AEe~n~~qL~n~~~eiIA~~W~dL 201 (280)
T KOG4591|consen 123 RWIYTDEIDFKEDDEFLLELCELANRFQLELLKERCEKGLGAL-LHVDNCIKFYEFAEELNARQLMNVAAEIIAGAWDDL 201 (280)
T ss_pred eeeeccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhH-hhHhhHHHHHHHHHHhhHHHHHHHHHHHHHhhcccc
Confidence 689999654322211 112899999999999999999886 999999999999999999999999999999888876
Q ss_pred hhcccchhccccHHHHHH
Q 001476 605 LTVSSHSFASASLDILAD 622 (1071)
Q Consensus 605 ~~~~~~~f~~l~~~~l~e 622 (1071)
- ...|..+++.+|--
T Consensus 202 ~---~a~FaqMs~aLLYk 216 (280)
T KOG4591|consen 202 G---KADFAQMSAALLYK 216 (280)
T ss_pred C---hHHHHhccHHHHHH
Confidence 5 77899999865443
No 132
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=96.40 E-value=0.0016 Score=81.78 Aligned_cols=96 Identities=21% Similarity=0.116 Sum_probs=77.9
Q ss_pred CCCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHH-hcCCCCCCCCCCCCccccc
Q 001476 25 GGVQKDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLL-AAGADPDARDGESGWSSLH 103 (1071)
Q Consensus 25 ~~g~TpLh~Aa~~G~~~~v~~iL~lLl~~Gadin~~d~~G~TpLH~Aa~~g~~eivk~LL-~~GAd~~~~d~~~G~TpL~ 103 (1071)
-.|+|.||+++..+..-.++.+++. .|-..+..|..|.--+|+ |..+++++..+|+ .+|..++.+| ..||||||
T Consensus 572 ~r~~lllhL~a~~lyawLie~~~e~---~~~~~~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D-~~G~tpL~ 646 (975)
T KOG0520|consen 572 FRDMLLLHLLAELLYAWLIEKVIEW---AGSGDLELDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRD-RNGWTPLH 646 (975)
T ss_pred CcchHHHHHHHHHhHHHHHHHHhcc---cccCchhhcccCCChhhH-hhhcCCceeEEEEeeccccccccc-CCCCcccc
Confidence 4578999999999988888844432 355566677777778888 6677788777775 5689999999 89999999
Q ss_pred cccccccccchhhhhccccccc
Q 001476 104 RALHFGHLAVASVLLQSGASIT 125 (1071)
Q Consensus 104 ~A~~~G~~~iv~lLl~~Ga~v~ 125 (1071)
+|+.+|+..++..|+..|++..
T Consensus 647 wAa~~G~e~l~a~l~~lga~~~ 668 (975)
T KOG0520|consen 647 WAAFRGREKLVASLIELGADPG 668 (975)
T ss_pred hHhhcCHHHHHHHHHHhccccc
Confidence 9999999999999998887765
No 133
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=96.08 E-value=0.0023 Score=80.43 Aligned_cols=91 Identities=27% Similarity=0.316 Sum_probs=71.7
Q ss_pred CCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCC-----CCCCCcc
Q 001476 26 GVQKDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDAR-----DGESGWS 100 (1071)
Q Consensus 26 ~g~TpLh~Aa~~G~~~~v~~iL~lLl~~Gadin~~d~~G~TpLH~Aa~~g~~eivk~LL~~GAd~~~~-----d~~~G~T 100 (1071)
++.-.+|++|..|. +.+-. +++-+|..++.+|..|+||||||+.+|+..++..|++.|++.... +...|.|
T Consensus 607 d~qgV~hfca~lg~-ewA~l---l~~~~~~ai~i~D~~G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~t 682 (975)
T KOG0520|consen 607 DGQGVIHFCAALGY-EWAFL---PISADGVAIDIRDRNGWTPLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKT 682 (975)
T ss_pred cCCChhhHhhhcCC-ceeEE---EEeecccccccccCCCCcccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCc
Confidence 34445888665554 43331 445689999999999999999999999999999999888655432 1246999
Q ss_pred ccccccccccccchhhhhcc
Q 001476 101 SLHRALHFGHLAVASVLLQS 120 (1071)
Q Consensus 101 pL~~A~~~G~~~iv~lLl~~ 120 (1071)
+..+|..+|+..+..+|-++
T Consensus 683 a~~la~s~g~~gia~~lse~ 702 (975)
T KOG0520|consen 683 AADLARANGHKGIAGYLSEK 702 (975)
T ss_pred hhhhhhcccccchHHHHhhh
Confidence 99999999999999999887
No 134
>KOG2505 consensus Ankyrin repeat protein [General function prediction only]
Probab=96.06 E-value=0.0074 Score=70.40 Aligned_cols=69 Identities=25% Similarity=0.297 Sum_probs=57.4
Q ss_pred HHHHHHhCCCCCccc------CCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCccccccccccccccchhhhh
Q 001476 46 ALALLKKNGGNINSR------NIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRALHFGHLAVASVLL 118 (1071)
Q Consensus 46 iL~lLl~~Gadin~~------d~~G~TpLH~Aa~~g~~eivk~LL~~GAd~~~~d~~~G~TpL~~A~~~G~~~iv~lLl 118 (1071)
.|++|.+++++.|.. +..--|+||||+..|...+|.+||+.|+|+.++| ..|+||..++. +.+|-..++
T Consensus 406 ~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd-~~Grtpy~ls~---nkdVk~~F~ 480 (591)
T KOG2505|consen 406 SIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKD-GAGRTPYSLSA---NKDVKSIFI 480 (591)
T ss_pred HHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcc-cCCCCcccccc---cHHHHHHHH
Confidence 445888999888754 3345799999999999999999999999999999 88999999987 556655555
No 135
>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]
Probab=95.96 E-value=0.016 Score=60.38 Aligned_cols=66 Identities=18% Similarity=0.072 Sum_probs=59.9
Q ss_pred CCCchHHHHHHHcCCHHHHHHHHHHHHhCC-CCCcccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCC
Q 001476 25 GGVQKDLCLAVREGSLADVESALALLKKNG-GNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARD 94 (1071)
Q Consensus 25 ~~g~TpLh~Aa~~G~~~~v~~iL~lLl~~G-adin~~d~~G~TpLH~Aa~~g~~eivk~LL~~GAd~~~~d 94 (1071)
.-|||+|+.||+.|+.+.+. +|+.+| +.+..+|..|++++.+|-..|+.++++.|.+.-.+-...+
T Consensus 10 ~fgWTalmcaa~eg~~eavs----yllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~ets~p~ 76 (223)
T KOG2384|consen 10 AFGWTALMCAAMEGSNEAVS----YLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRETSHPM 76 (223)
T ss_pred hhcchHHHHHhhhcchhHHH----HHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhccCCCcc
Confidence 45899999999999999999 888999 9999999999999999999999999999999866655554
No 136
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=95.95 E-value=0.013 Score=54.96 Aligned_cols=48 Identities=19% Similarity=0.449 Sum_probs=42.7
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHHhhhhhhhhcccchhccccHHHHHHHH
Q 001476 575 LQLLEISDSLGADDLKKHCEDIAIRNLDYILTVSSHSFASASLDILADLE 624 (1071)
Q Consensus 575 ~~il~lA~~~~~~~Lk~~C~~f~~~nld~v~~~~~~~f~~l~~~~l~el~ 624 (1071)
+.++.+|+.|++..|.++|.+|+..|+..|+ .++.|..|+.+.+.+|.
T Consensus 2 ~~i~~~A~~~~~~~L~~~~~~~i~~nf~~v~--~~~~f~~L~~~~l~~iL 49 (103)
T PF07707_consen 2 LSIYRLAEKYGLEELAEACLRFIAKNFNEVS--KSDEFLELPFDQLIEIL 49 (103)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTHHHHT--TSHHHHCS-HHHHHHHH
T ss_pred hhHHHHHHHcChHHHHHHHHHHHHHHHHHHc--cchhhhcCCHHHHHHHH
Confidence 6789999999999999999999999999999 89999999998877773
No 137
>smart00248 ANK ankyrin repeats. Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.
Probab=95.66 E-value=0.017 Score=39.43 Aligned_cols=29 Identities=41% Similarity=0.524 Sum_probs=23.6
Q ss_pred CCCcHHHHHHhcCCHHHHHHHHhcCCCCC
Q 001476 63 FGLTPLHSAIWRNQVPIVRRLLAAGADPD 91 (1071)
Q Consensus 63 ~G~TpLH~Aa~~g~~eivk~LL~~GAd~~ 91 (1071)
.|.||||+|+..++.+++++|+++|.+++
T Consensus 1 ~~~~~l~~~~~~~~~~~~~~ll~~~~~~~ 29 (30)
T smart00248 1 DGRTPLHLAAENGNLEVVKLLLDKGADIN 29 (30)
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence 36788888888888888888888887664
No 138
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=95.16 E-value=0.03 Score=51.97 Aligned_cols=47 Identities=21% Similarity=0.338 Sum_probs=42.7
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHHhhhhhhhhcccchhccccHHHHHHH
Q 001476 575 LQLLEISDSLGADDLKKHCEDIAIRNLDYILTVSSHSFASASLDILADL 623 (1071)
Q Consensus 575 ~~il~lA~~~~~~~Lk~~C~~f~~~nld~v~~~~~~~f~~l~~~~l~el 623 (1071)
+.++.+|+.|++..|++.|.+|+..|+..++ .++.|..|+.+.+.+|
T Consensus 2 ~~i~~~a~~~~~~~L~~~~~~~i~~nf~~~~--~~~~f~~L~~~~l~~i 48 (101)
T smart00875 2 LGIRRFAELYGLEELLEKALRFILKNFLEVA--QSEEFLELSLEQLLSL 48 (101)
T ss_pred HhHHHHHHHhChHHHHHHHHHHHHHHHHHHh--cCcHHhcCCHHHHHHH
Confidence 4688899999999999999999999999998 7899999998877766
No 139
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=94.58 E-value=0.48 Score=62.99 Aligned_cols=294 Identities=15% Similarity=0.141 Sum_probs=151.6
Q ss_pred ceEEEEecCCceEEEE--------ecCCcE-EEEecCCCC-CCCCCCCccCCCCcceeeee---eeecCCCCCCEEEEEe
Q 001476 188 FVIKLISAAKFHSVAV--------TSLGEV-YTWGYGRGG-RLGHPDFDIHSGQAAVITPR---RVTSGLGSRRVKTIAA 254 (1071)
Q Consensus 188 ~~I~~Va~G~~HslaL--------T~dG~V-y~WG~N~~G-QLG~g~~~~~s~~~~~~~P~---~V~~~l~~~~Iv~IAc 254 (1071)
..++.++++..+...+ ..+|+| ..-|....+ ||+..... .....|. .+...-+......|..
T Consensus 422 ~~l~nLSs~~~~~~~v~~l~sfSv~~~g~vA~L~~~d~q~~qL~~m~~~-----~a~~~p~~~~~L~L~dG~a~A~~VgL 496 (1774)
T PF11725_consen 422 DTLVNLSSGQMSEAEVDKLKSFSVAPDGTVAMLTGKDGQTLQLHDMSPV-----DAPPTPRKTKTLQLADGKAQAQSVGL 496 (1774)
T ss_pred CceeecCCCCcchhhhhhcccccccCCCceeeeecCCCcceeeeccCcc-----ccccCccceeeeeccCCchhhhheee
Confidence 4566666665554443 456665 445554445 55554321 1122231 1111112336778888
Q ss_pred cCceEEEEEcCCcEEEEeCCCCCCcCCCCCCCCCcce--------------eeccCc----c---cEEEEEEcCCceeEE
Q 001476 255 AKHHTVLATEGGEVFTWGSNREGQLGYTSVDTQPTPR--------------RVSSLK----L---KIIAVAAANKHTAVV 313 (1071)
Q Consensus 255 G~~HslaLT~dG~VyswG~N~~GQLG~g~~~~~~~P~--------------~V~~l~----~---~Iv~VacG~~HSlaL 313 (1071)
...+-++.+.+|+||+--....+ .+...-...|. +|.+|- . -++.=..|..|+++|
T Consensus 497 s~drLFvADseGkLYsa~l~~~~---~~~~~l~~~p~~~~~~~~~~~G~~~~VtGF~~gd~G~lhAlikd~~GQ~Hs~aL 573 (1774)
T PF11725_consen 497 SNDRLFVADSEGKLYSADLPAAQ---DNEPKLKLMPEPAYQLLGSALGGDHKVTGFISGDDGQLHALIKDRQGQRHSHAL 573 (1774)
T ss_pred cCCeEEEEeCCCCEEeccccccc---CCCcceEeccccccccccccccccceeeccccCCCCeeeEEEeccCCceeeccc
Confidence 88889999999999974322211 11111111111 222221 1 234446788899999
Q ss_pred ecCCcEEEEeCCCCCCcCCCCCCCCC---cccceeeeccCCCCEEEEEecCCeEEEEeeCCcEEEEecCCCCCCCccc-e
Q 001476 314 SESGEVFTWGCNREGQLGYGTSNSAS---NYTPRVVESLKGKDLVGVAAAKYHTIVLGADGERVIVARNLKKSGSTPL-K 389 (1071)
Q Consensus 314 t~dG~VY~WG~N~~GQLG~g~~~~~~---~~~P~~V~~l~~~~I~~IaaG~~hTlaLt~dG~Vy~wG~n~~~~~~~P~-~ 389 (1071)
+++|.=|-=|||-.-.|=+.+..--. ...|..+.. -|..-.+.|. +|+|+.|-........+-+ .
T Consensus 574 de~~~~~~pGWNLSd~Lvl~N~~GL~~~~~p~~~~~ld----------l~r~G~v~L~-~G~i~~wD~ttq~W~~~~~kd 642 (1774)
T PF11725_consen 574 DEQGSQLQPGWNLSDALVLDNTRGLPKPPAPAPHEILD----------LGRAGLVGLQ-DGKIQYWDSTTQCWKDAGVKD 642 (1774)
T ss_pred cccCCccCCCCcccceeEeeccCCCCCCCCCChHHhhc----------cccccceeec-cceEeeecCcchhhhhccCcC
Confidence 98888888888865444332221100 112222222 2444556664 6999998755322111111 0
Q ss_pred ecc-----------ccCCcE---------EEEEeCCCcceEEecCCcEEEEeCCCCCCceeeeeecCCceeEEEE-eCCc
Q 001476 390 FHR-----------KIKLHV---------VSIAAGMVHSTALTEDGALFYWASSDPDLRCQQLYSMCGRNVVSIS-AGKY 448 (1071)
Q Consensus 390 ~~~-----------~~~~~I---------~~Ia~G~~hslaLt~dG~Vy~WG~n~~~~~p~~v~~l~g~~Vv~Ia-aG~~ 448 (1071)
+.. +.+-+| ..|+-|.+|.++++.--.-+..|. .+..+.+..|..++ .+.+
T Consensus 643 ~~~L~RG~D~~AYVLk~G~vk~l~i~~~~~~~~~g~~~~~a~~~~r~~~e~G~--------~l~Gl~~~~i~a~Avv~~~ 714 (1774)
T PF11725_consen 643 IDQLKRGLDGNAYVLKDGKVKRLSINQEHPSIAHGDNNVFALPQRRNKVELGD--------ALEGLEDRVITAFAVVNDN 714 (1774)
T ss_pred HHHHhccccCCceEecCCceeeeecccCCCccccCCCcccccccccCCCCCCc--------cccCCCcCcceeEEEEcCC
Confidence 000 000011 123344444444433222222221 23445556666665 4779
Q ss_pred EEEEEeeCCcEEEecCCCCCCCCCceEEecCc-ccEEEEEecCCeEEEEEeCCCCcc-----CCCCCCCC
Q 001476 449 WTAAVTATGDVYMWDGKKSKDNPPLVTRLHGI-KKATSVSVGETHLLIVGSLYHPIY-----PPNVAKNP 512 (1071)
Q Consensus 449 hs~aLT~dG~Vy~WG~N~~~~~~~~p~~v~g~-~~V~~Va~G~~HtlaL~s~~~~v~-----~wG~~~~g 512 (1071)
+++++++.|++-..- ..+. |.+..-+++ -.|.++++-..|.+.-....|.+| .|-.+..+
T Consensus 715 ~fvald~qg~lt~h~--k~g~--p~~l~~~gl~G~ik~l~lD~~~nL~Alt~~G~Lf~~~k~~WQ~~~~~ 780 (1774)
T PF11725_consen 715 KFVALDDQGDLTAHQ--KPGR--PVPLSRPGLSGEIKDLALDEKQNLYALTSTGELFRLPKEAWQGNAEG 780 (1774)
T ss_pred ceEEeccCCcccccc--CCCC--CccCCCCCCCcchhheeeccccceeEecCCCceeecCHHHhhCcccC
Confidence 999999999988765 2222 333333333 379999999999987766668888 46544444
No 140
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=93.38 E-value=15 Score=44.64 Aligned_cols=108 Identities=19% Similarity=0.238 Sum_probs=72.0
Q ss_pred cCCceEEEEecCCcEEEEecCCCCCCCCCCCccCCCCcceeeeeeeecCCCCCCEEEEEecC-ceEEEEEcCCcEE-EEe
Q 001476 195 AAKFHSVAVTSLGEVYTWGYGRGGRLGHPDFDIHSGQAAVITPRRVTSGLGSRRVKTIAAAK-HHTVLATEGGEVF-TWG 272 (1071)
Q Consensus 195 ~G~~HslaLT~dG~Vy~WG~N~~GQLG~g~~~~~s~~~~~~~P~~V~~~l~~~~Iv~IAcG~-~HslaLT~dG~Vy-swG 272 (1071)
.|.....+|+++|++|.= -|...... .+..- ..+. ....+.+|++|- .-..+++.+|.|| --|
T Consensus 190 ~g~~~awAI~s~Gd~y~R-------tGvs~~~P-~GraW----~~i~---~~t~L~qISagPtg~VwAvt~nG~vf~R~G 254 (705)
T KOG3669|consen 190 LGDDTAWAIRSSGDLYLR-------TGVSVDRP-CGRAW----KVIC---PYTDLSQISAGPTGVVWAVTENGAVFYREG 254 (705)
T ss_pred CCceEEEEEecCCcEEEe-------ccccCCCC-CCcee----eecC---CCCccceEeecCcceEEEEeeCCcEEEEec
Confidence 567777889999998862 22221100 00000 1111 122588999998 7778999999975 578
Q ss_pred CCCCCCcCCCCCCCCCcceeeccCcccEEEEEEcCCceeEEecCCcEEEE
Q 001476 273 SNREGQLGYTSVDTQPTPRRVSSLKLKIIAVAAANKHTAVVSESGEVFTW 322 (1071)
Q Consensus 273 ~N~~GQLG~g~~~~~~~P~~V~~l~~~Iv~VacG~~HSlaLt~dG~VY~W 322 (1071)
-.++.+.|.. -....+|+... .++.|+.|....-+||.+|.+|.-
T Consensus 255 VsRqNp~Gds-WkdI~tP~~a~----~~v~iSvGt~t~Waldndg~lwfr 299 (705)
T KOG3669|consen 255 VSRQNPEGDS-WKDIVTPRQAL----EPVCISVGTQTLWALDNDGNLWFR 299 (705)
T ss_pred ccccCCCCch-hhhccCccccc----ceEEEEeccceEEEEecCCcEEEE
Confidence 7777777754 23455565543 389999999999999999999875
No 141
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=93.36 E-value=0.63 Score=61.95 Aligned_cols=280 Identities=14% Similarity=0.164 Sum_probs=148.5
Q ss_pred eEEEEecCCceEEEEecCCcEEEEecCCCCCCCCCCCccCCCCcceeeeeee--------------ecCCCC-----CCE
Q 001476 189 VIKLISAAKFHSVAVTSLGEVYTWGYGRGGRLGHPDFDIHSGQAAVITPRRV--------------TSGLGS-----RRV 249 (1071)
Q Consensus 189 ~I~~Va~G~~HslaLT~dG~Vy~WG~N~~GQLG~g~~~~~s~~~~~~~P~~V--------------~~~l~~-----~~I 249 (1071)
..+.|.....+-++.+.+|+||.--....+ .+. ......|... ...+.+ .-.
T Consensus 490 ~A~~VgLs~drLFvADseGkLYsa~l~~~~---~~~------~~l~~~p~~~~~~~~~~~G~~~~VtGF~~gd~G~lhAl 560 (1774)
T PF11725_consen 490 QAQSVGLSNDRLFVADSEGKLYSADLPAAQ---DNE------PKLKLMPEPAYQLLGSALGGDHKVTGFISGDDGQLHAL 560 (1774)
T ss_pred hhhheeecCCeEEEEeCCCCEEeccccccc---CCC------cceEeccccccccccccccccceeeccccCCCCeeeEE
Confidence 566777777788899999999985433221 110 0111111111 101111 122
Q ss_pred EEEEecCceEEEEEcCCcEEEEeCCCCCCcCCCCCCC-----CCcceeeccCcccEEEEEEcCCceeEEecCCcEEEEeC
Q 001476 250 KTIAAAKHHTVLATEGGEVFTWGSNREGQLGYTSVDT-----QPTPRRVSSLKLKIIAVAAANKHTAVVSESGEVFTWGC 324 (1071)
Q Consensus 250 v~IAcG~~HslaLT~dG~VyswG~N~~GQLG~g~~~~-----~~~P~~V~~l~~~Iv~VacG~~HSlaLt~dG~VY~WG~ 324 (1071)
+.=..|..|+++|.++|.=|.=|||-.-.|=+.+... .+.|..+ +-.|..-.++|. +|+|+.|-.
T Consensus 561 ikd~~GQ~Hs~aLde~~~~~~pGWNLSd~Lvl~N~~GL~~~~~p~~~~~---------ldl~r~G~v~L~-~G~i~~wD~ 630 (1774)
T PF11725_consen 561 IKDRQGQRHSHALDEQGSQLQPGWNLSDALVLDNTRGLPKPPAPAPHEI---------LDLGRAGLVGLQ-DGKIQYWDS 630 (1774)
T ss_pred EeccCCceeeccccccCCccCCCCcccceeEeeccCCCCCCCCCChHHh---------hccccccceeec-cceEeeecC
Confidence 3334577888888888887777877654443322111 2222222 223455667777 499999954
Q ss_pred CCCC----------CcCCCCCCCCCcccceeeeccC-CCCEEEEEecCCeEEEEeeCCcEEEEecCCCCCCCccceeccc
Q 001476 325 NREG----------QLGYGTSNSASNYTPRVVESLK-GKDLVGVAAAKYHTIVLGADGERVIVARNLKKSGSTPLKFHRK 393 (1071)
Q Consensus 325 N~~G----------QLG~g~~~~~~~~~P~~V~~l~-~~~I~~IaaG~~hTlaLt~dG~Vy~wG~n~~~~~~~P~~~~~~ 393 (1071)
...+ ||-.|......+..--.|..+. ...--.|+.|.++.++++.--.-+..|.. +.-+
T Consensus 631 ttq~W~~~~~kd~~~L~RG~D~~AYVLk~G~vk~l~i~~~~~~~~~g~~~~~a~~~~r~~~e~G~~----------l~Gl 700 (1774)
T PF11725_consen 631 TTQCWKDAGVKDIDQLKRGLDGNAYVLKDGKVKRLSINQEHPSIAHGDNNVFALPQRRNKVELGDA----------LEGL 700 (1774)
T ss_pred cchhhhhccCcCHHHHhccccCCceEecCCceeeeecccCCCccccCCCcccccccccCCCCCCcc----------ccCC
Confidence 3221 1222222221111111110000 00112233444444444322222222221 1222
Q ss_pred cCCcEEEEE-eCCCcceEEecCCcEEEEeCCCCCCceeee--eecCCceeEEEEeCCcEE-EEEeeCCcEEE-----ecC
Q 001476 394 IKLHVVSIA-AGMVHSTALTEDGALFYWASSDPDLRCQQL--YSMCGRNVVSISAGKYWT-AAVTATGDVYM-----WDG 464 (1071)
Q Consensus 394 ~~~~I~~Ia-~G~~hslaLt~dG~Vy~WG~n~~~~~p~~v--~~l~g~~Vv~IaaG~~hs-~aLT~dG~Vy~-----WG~ 464 (1071)
....|..++ .+.++.++|++.|++-..- -... |..+ ..+. -.|..|++-..|. +|+|.+|++|. |=.
T Consensus 701 ~~~~i~a~Avv~~~~fvald~qg~lt~h~-k~g~--p~~l~~~gl~-G~ik~l~lD~~~nL~Alt~~G~Lf~~~k~~WQ~ 776 (1774)
T PF11725_consen 701 EDRVITAFAVVNDNKFVALDDQGDLTAHQ-KPGR--PVPLSRPGLS-GEIKDLALDEKQNLYALTSTGELFRLPKEAWQG 776 (1774)
T ss_pred CcCcceeEEEEcCCceEEeccCCcccccc-CCCC--CccCCCCCCC-cchhheeeccccceeEecCCCceeecCHHHhhC
Confidence 233455554 4678899999999886655 2111 3322 2343 4699999988755 56999999998 555
Q ss_pred CCCC---CCCCceEEecCcccEEEEEecCCeEEEEEeCCC
Q 001476 465 KKSK---DNPPLVTRLHGIKKATSVSVGETHLLIVGSLYH 501 (1071)
Q Consensus 465 N~~~---~~~~~p~~v~g~~~V~~Va~G~~HtlaL~s~~~ 501 (1071)
+... .....|..+++...|..+....+|.+.+.-.++
T Consensus 777 ~~~~~~~~~~W~~v~lP~~~~v~~l~~~~~~~l~~~~~d~ 816 (1774)
T PF11725_consen 777 NAEGDQMAAKWQKVALPDEQPVKSLRTNDDNHLSAQIEDG 816 (1774)
T ss_pred cccCCccccCceeccCCCCCchhhhhcCCCCceEEEecCC
Confidence 5433 234566777777789999999999999987754
No 142
>KOG2505 consensus Ankyrin repeat protein [General function prediction only]
Probab=92.72 E-value=0.13 Score=60.55 Aligned_cols=65 Identities=15% Similarity=0.056 Sum_probs=48.4
Q ss_pred HHHHHhCCCCccccCCccccCCCCCCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHH
Q 001476 2 TELLVSHHGQKQTLQSPARKSSLGGVQKDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAI 72 (1071)
Q Consensus 2 ve~LLe~ga~~~~~~~~~~~~~~~~g~TpLh~Aa~~G~~~~v~~iL~lLl~~Gadin~~d~~G~TpLH~Aa 72 (1071)
|++|.+++...+-..- ......--.|+||+|+..|+.++|. +||+.|+|+..+|..|+||..+++
T Consensus 407 ie~lken~lsgnf~~~--pe~~~~ltsT~LH~aa~qg~~k~v~----~~Leeg~Dp~~kd~~Grtpy~ls~ 471 (591)
T KOG2505|consen 407 IEALKENLLSGNFDVT--PEANDYLTSTFLHYAAAQGARKCVK----YFLEEGCDPSTKDGAGRTPYSLSA 471 (591)
T ss_pred HHHHHhcCCccccccc--ccccccccchHHHHHHhcchHHHHH----HHHHhcCCchhcccCCCCcccccc
Confidence 6778877665432111 1111112359999999999999998 888899999999999999999987
No 143
>smart00248 ANK ankyrin repeats. Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.
Probab=91.58 E-value=0.28 Score=33.08 Aligned_cols=28 Identities=39% Similarity=0.544 Sum_probs=24.3
Q ss_pred CchHHHHHHHcCCHHHHHHHHHHHHhCCCCCc
Q 001476 27 VQKDLCLAVREGSLADVESALALLKKNGGNIN 58 (1071)
Q Consensus 27 g~TpLh~Aa~~G~~~~v~~iL~lLl~~Gadin 58 (1071)
+.||||+|+..++.++++ .|++.+.+++
T Consensus 2 ~~~~l~~~~~~~~~~~~~----~ll~~~~~~~ 29 (30)
T smart00248 2 GRTPLHLAAENGNLEVVK----LLLDKGADIN 29 (30)
T ss_pred CCCHHHHHHHcCCHHHHH----HHHHcCCCCC
Confidence 578999999999999998 7778888765
No 144
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=90.90 E-value=38 Score=39.67 Aligned_cols=291 Identities=11% Similarity=0.070 Sum_probs=127.8
Q ss_pred CCceEEEEecCCceEEEEecCC-cEEEEecCCCCCCCCCCCccCCCCcceeeeeeeecCCCCCCEEEEEecCc-------
Q 001476 186 HGFVIKLISAAKFHSVAVTSLG-EVYTWGYGRGGRLGHPDFDIHSGQAAVITPRRVTSGLGSRRVKTIAAAKH------- 257 (1071)
Q Consensus 186 ~~~~I~~Va~G~~HslaLT~dG-~Vy~WG~N~~GQLG~g~~~~~s~~~~~~~P~~V~~~l~~~~Iv~IAcG~~------- 257 (1071)
...-+..|..|...-.+++.|| .+|++-. .+-++-.|..+ ....++- .-....+..|..|..
T Consensus 36 ~~~v~g~i~~G~~P~~~~spDg~~lyva~~-~~~R~~~G~~~---d~V~v~D------~~t~~~~~~i~~p~~p~~~~~~ 105 (352)
T TIGR02658 36 AGRVLGMTDGGFLPNPVVASDGSFFAHAST-VYSRIARGKRT---DYVEVID------PQTHLPIADIELPEGPRFLVGT 105 (352)
T ss_pred CCEEEEEEEccCCCceeECCCCCEEEEEec-cccccccCCCC---CEEEEEE------CccCcEEeEEccCCCchhhccC
Confidence 3445667778765555688887 5777643 22222233210 0111111 223345555665544
Q ss_pred --eEEEEEcCCc-EEEEeCCCCCCcCCCCCCCCCcceeeccCcccEEEEEEcCCceeEEecCCcEEEEeCCCCCCcCCCC
Q 001476 258 --HTVLATEGGE-VFTWGSNREGQLGYTSVDTQPTPRRVSSLKLKIIAVAAANKHTAVVSESGEVFTWGCNREGQLGYGT 334 (1071)
Q Consensus 258 --HslaLT~dG~-VyswG~N~~GQLG~g~~~~~~~P~~V~~l~~~Iv~VacG~~HSlaLt~dG~VY~WG~N~~GQLG~g~ 334 (1071)
+.++|+.||+ +|..-.+....+..-+......-..|.-.....+ +..+....+++..||..........|..-..
T Consensus 106 ~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~v-y~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~- 183 (352)
T TIGR02658 106 YPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHI-FPTANDTFFMHCRDGSLAKVGYGTKGNPKIK- 183 (352)
T ss_pred ccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEE-EEecCCccEEEeecCceEEEEecCCCceEEe-
Confidence 4889999996 7776434333332222222211111211111111 1222333334444555544444444431100
Q ss_pred CCCCCcccceeeeccCCCCEEEEEecCCeEEEEeeCCcEEEEecCCCCC-CCccceeccccCCcEEEEEeCCCcceEEec
Q 001476 335 SNSASNYTPRVVESLKGKDLVGVAAAKYHTIVLGADGERVIVARNLKKS-GSTPLKFHRKIKLHVVSIAAGMVHSTALTE 413 (1071)
Q Consensus 335 ~~~~~~~~P~~V~~l~~~~I~~IaaG~~hTlaLt~dG~Vy~wG~n~~~~-~~~P~~~~~~~~~~I~~Ia~G~~hslaLt~ 413 (1071)
+...+.+.....+. .. ..+.....-++++..|.||..--..... ...+....... ..-..+.-|...-++++.
T Consensus 184 --~~~vf~~~~~~v~~-rP--~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~-~~~~~wrP~g~q~ia~~~ 257 (352)
T TIGR02658 184 --PTEVFHPEDEYLIN-HP--AYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEA-EKADGWRPGGWQQVAYHR 257 (352)
T ss_pred --eeeeecCCcccccc-CC--ceEcCCCcEEEEecCCeEEEEecCCCcceecceeeecccc-ccccccCCCcceeEEEcC
Confidence 00000010111111 11 2244345667777778888875321111 11111111000 000124445555577775
Q ss_pred C-CcEEEEeC-------CCCCCceeeeeecCCceeEEEEeCC-cEEEEEeeCCcEEEecCCCCCCCCCceEEecCcccEE
Q 001476 414 D-GALFYWAS-------SDPDLRCQQLYSMCGRNVVSISAGK-YWTAAVTATGDVYMWDGKKSKDNPPLVTRLHGIKKAT 484 (1071)
Q Consensus 414 d-G~Vy~WG~-------n~~~~~p~~v~~l~g~~Vv~IaaG~-~hs~aLT~dG~Vy~WG~N~~~~~~~~p~~v~g~~~V~ 484 (1071)
+ +++|+-.. ..++-....+..-....+..|..|. -|.++++.||+.+.+-.|..... .....+...+.+.
T Consensus 258 dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~-VsViD~~t~k~i~ 336 (352)
T TIGR02658 258 ARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKT-LYIFDAETGKELS 336 (352)
T ss_pred CCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCc-EEEEECcCCeEEe
Confidence 5 46776321 1111122222333445667777775 47889999999666665643221 1223333445555
Q ss_pred EE-EecCCeEEE
Q 001476 485 SV-SVGETHLLI 495 (1071)
Q Consensus 485 ~V-a~G~~Htla 495 (1071)
.| ..|..-.++
T Consensus 337 ~i~~vg~~P~~~ 348 (352)
T TIGR02658 337 SVNQLGRGPQVI 348 (352)
T ss_pred eeccCCCCCeEE
Confidence 66 555443333
No 145
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=90.68 E-value=0.18 Score=57.95 Aligned_cols=92 Identities=20% Similarity=0.302 Sum_probs=74.2
Q ss_pred hcccCCCCCCCCCCccc--ccccccchhHHHHHHHHHHhhcCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhhhhhhhh
Q 001476 529 DFMFNDESNNMPSAIDK--DDSGVRLAPSLKSLCENVAAQCLVEPRNALQLLEISDSLGADDLKKHCEDIAIRNLDYILT 606 (1071)
Q Consensus 529 dfmYtD~~~~~~~~~~~--~aAd~y~~~~LK~lCE~~l~~~~v~~~nv~~il~lA~~~~~~~Lk~~C~~f~~~nld~v~~ 606 (1071)
..||.|+.+=..+.+.. .+|.-..++.|-.-|-+++.+. +.++||+.-.+.|.+|+-+.+|+.|++++..||--++
T Consensus 129 gsLY~dEveI~l~dv~gvlAaA~~lqldgl~qrC~evMie~-lspkta~~yYea~ckYgle~vk~kc~ewl~~nl~~i~- 206 (488)
T KOG4682|consen 129 GSLYRDEVEIKLSDVVGVLAAACLLQLDGLIQRCGEVMIET-LSPKTACGYYEAACKYGLESVKKKCLEWLLNNLMTIQ- 206 (488)
T ss_pred hhhhhhheeccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh-cChhhhhHhhhhhhhhhhHHHHHHHHHHHHHhhHhhh-
Confidence 46888855421111111 1677788899999999999998 9999999999999999999999999999999999999
Q ss_pred cccchhccccHHHHHHH
Q 001476 607 VSSHSFASASLDILADL 623 (1071)
Q Consensus 607 ~~~~~f~~l~~~~l~el 623 (1071)
..+-+.+++.+++.-|
T Consensus 207 -~~q~l~ei~~~Lm~~l 222 (488)
T KOG4682|consen 207 -NVQLLKEISINLMKQL 222 (488)
T ss_pred -hHHHHHhcCHHHHHHH
Confidence 6567777777666655
No 146
>PLN02153 epithiospecifier protein
Probab=90.63 E-value=38 Score=39.10 Aligned_cols=20 Identities=30% Similarity=0.305 Sum_probs=13.4
Q ss_pred EEEEEeeCCcEEEecCCCCC
Q 001476 449 WTAAVTATGDVYMWDGKKSK 468 (1071)
Q Consensus 449 hs~aLT~dG~Vy~WG~N~~~ 468 (1071)
+++.+..++++|+||+-...
T Consensus 307 ~~~~v~~~~~~~~~gG~~~~ 326 (341)
T PLN02153 307 TTATVYGKNGLLMHGGKLPT 326 (341)
T ss_pred cccccCCcceEEEEcCcCCC
Confidence 34455666789999976543
No 147
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=90.52 E-value=0.51 Score=59.10 Aligned_cols=61 Identities=31% Similarity=0.254 Sum_probs=44.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCC---------c-ccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCC
Q 001476 30 DLCLAVREGSLADVESALALLKKNGGNI---------N-SRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARD 94 (1071)
Q Consensus 30 pLh~Aa~~G~~~~v~~iL~lLl~~Gadi---------n-~~d~~G~TpLH~Aa~~g~~eivk~LL~~GAd~~~~d 94 (1071)
+|.+|+..|....|+ +++.+-... + ..-..+.|||++||..++++|+++||..|+.+....
T Consensus 91 ALL~aI~~~~v~~VE----~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~PH 161 (822)
T KOG3609|consen 91 ALLLAIAVGSVPLVE----LLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPIPH 161 (822)
T ss_pred HHHHHHHHHHHHHHH----HHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCCCc
Confidence 477777777777777 444443322 1 112457899999999999999999999999877654
No 148
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=90.29 E-value=26 Score=36.71 Aligned_cols=212 Identities=16% Similarity=0.123 Sum_probs=97.0
Q ss_pred eEEEEEcCCcEEEEeCCCCCCcCCCCCCCCCcceeeccCcccEEEEEEcCC-ceeEEec-CCcEEEEeCCCCCCcCCCCC
Q 001476 258 HTVLATEGGEVFTWGSNREGQLGYTSVDTQPTPRRVSSLKLKIIAVAAANK-HTAVVSE-SGEVFTWGCNREGQLGYGTS 335 (1071)
Q Consensus 258 HslaLT~dG~VyswG~N~~GQLG~g~~~~~~~P~~V~~l~~~Iv~VacG~~-HSlaLt~-dG~VY~WG~N~~GQLG~g~~ 335 (1071)
+.++...+|.|+.|-..... ....+......|..+..... ..++... +|.|+.|-......+.
T Consensus 65 ~l~~~~~~~~i~i~~~~~~~-----------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---- 129 (289)
T cd00200 65 YLASGSSDKTIRLWDLETGE-----------CVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLT---- 129 (289)
T ss_pred EEEEEcCCCeEEEEEcCccc-----------ceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEE----
Confidence 45555668899888654321 11122222234666655443 3334444 8899998654211110
Q ss_pred CCCCcccceeeeccCCCCEEEEEecC-CeEEEEee-CCcEEEEecCCCCCCCccceeccccCCcEEEEEeCCC--cceEE
Q 001476 336 NSASNYTPRVVESLKGKDLVGVAAAK-YHTIVLGA-DGERVIVARNLKKSGSTPLKFHRKIKLHVVSIAAGMV--HSTAL 411 (1071)
Q Consensus 336 ~~~~~~~P~~V~~l~~~~I~~IaaG~-~hTlaLt~-dG~Vy~wG~n~~~~~~~P~~~~~~~~~~I~~Ia~G~~--hslaL 411 (1071)
.+. .....|..+.... ...++... +|.++.|-..... +..........|..+..... +.++.
T Consensus 130 ---------~~~-~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~----~~~~~~~~~~~i~~~~~~~~~~~l~~~ 195 (289)
T cd00200 130 ---------TLR-GHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGK----CVATLTGHTGEVNSVAFSPDGEKLLSS 195 (289)
T ss_pred ---------Eec-cCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccc----cceeEecCccccceEEECCCcCEEEEe
Confidence 011 1122355555544 23333333 8888888654211 11111111224444444333 45555
Q ss_pred ecCCcEEEEeCCCCCCceeeeeecCCceeEEEEeCC-cEEEEEee-CCcEEEecCCCCCCCCCceEEecC-cccEEEEEe
Q 001476 412 TEDGALFYWASSDPDLRCQQLYSMCGRNVVSISAGK-YWTAAVTA-TGDVYMWDGKKSKDNPPLVTRLHG-IKKATSVSV 488 (1071)
Q Consensus 412 t~dG~Vy~WG~n~~~~~p~~v~~l~g~~Vv~IaaG~-~hs~aLT~-dG~Vy~WG~N~~~~~~~~p~~v~g-~~~V~~Va~ 488 (1071)
..+|.++.|-....... .........+..+.... ...++... +|.++.|....... ...+.. ...|..++.
T Consensus 196 ~~~~~i~i~d~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~----~~~~~~~~~~i~~~~~ 269 (289)
T cd00200 196 SSDGTIKLWDLSTGKCL--GTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGEC----VQTLSGHTNSVTSLAW 269 (289)
T ss_pred cCCCcEEEEECCCCcee--cchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCcee----EEEccccCCcEEEEEE
Confidence 56888888876532111 11101122455555444 23333333 89999997553221 111111 124666666
Q ss_pred cCC-eEEEEEeCCCCcc
Q 001476 489 GET-HLLIVGSLYHPIY 504 (1071)
Q Consensus 489 G~~-HtlaL~s~~~~v~ 504 (1071)
... ..++.+..++.+.
T Consensus 270 ~~~~~~l~~~~~d~~i~ 286 (289)
T cd00200 270 SPDGKRLASGSADGTIR 286 (289)
T ss_pred CCCCCEEEEecCCCeEE
Confidence 554 3344444434443
No 149
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=90.08 E-value=0.49 Score=55.79 Aligned_cols=92 Identities=17% Similarity=0.292 Sum_probs=69.2
Q ss_pred hcccCCCCCCCC-CCcc-cccccccchhHHHHHHHHHHhhcCCCcccHHHHHHH-HHhcCchhHHHHHHHHHHhhhhhhh
Q 001476 529 DFMFNDESNNMP-SAID-KDDSGVRLAPSLKSLCENVAAQCLVEPRNALQLLEI-SDSLGADDLKKHCEDIAIRNLDYIL 605 (1071)
Q Consensus 529 dfmYtD~~~~~~-~~~~-~~aAd~y~~~~LK~lCE~~l~~~~v~~~nv~~il~l-A~~~~~~~Lk~~C~~f~~~nld~v~ 605 (1071)
+|||.|...-.. ..+. .++|+.|.++.|+.-|-+.|... +-..|+.-.|-- |.....++|-+.|++.+..++...+
T Consensus 176 ~flYsdev~~~~dtvi~tl~~AkKY~VpaLer~CVkflr~~-l~~~naf~~L~q~A~lf~ep~Li~~c~e~id~~~~~al 254 (521)
T KOG2075|consen 176 RFLYSDEVKLAADTVITTLYAAKKYLVPALERQCVKFLRKN-LMADNAFLELFQRAKLFDEPSLISICLEVIDKSFEDAL 254 (521)
T ss_pred HHHhcchhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCChHHHHHHHHHHHhhcCHHHHHHHHHHhhhHHHhhh
Confidence 699998331111 0100 11899999999999999999887 666777666655 9999999999999999988876666
Q ss_pred hcccchhcccc--HHHHHHH
Q 001476 606 TVSSHSFASAS--LDILADL 623 (1071)
Q Consensus 606 ~~~~~~f~~l~--~~~l~el 623 (1071)
..+||-+.. .+.+.|+
T Consensus 255 --~~EGf~did~~~dt~~ev 272 (521)
T KOG2075|consen 255 --TPEGFCDIDSTRDTYEEV 272 (521)
T ss_pred --CccceeehhhHHHHHHHH
Confidence 689999887 5555555
No 150
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=90.08 E-value=9.3 Score=42.10 Aligned_cols=111 Identities=14% Similarity=0.164 Sum_probs=59.8
Q ss_pred CCEEEEEe--cCCeEEEEeeCCcEEEEecCCCCCCCccceeccccCCcEEEEEeCCCcceEEecCCcEEEEeCCCCCCce
Q 001476 352 KDLVGVAA--AKYHTIVLGADGERVIVARNLKKSGSTPLKFHRKIKLHVVSIAAGMVHSTALTEDGALFYWASSDPDLRC 429 (1071)
Q Consensus 352 ~~I~~Iaa--G~~hTlaLt~dG~Vy~wG~n~~~~~~~P~~~~~~~~~~I~~Ia~G~~hslaLt~dG~Vy~WG~n~~~~~p 429 (1071)
++|..|.. -....+-=.+||.+-.|---. ...+..+......+-+-+---..+.+.-+.+|.|++|--.......
T Consensus 84 kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~---~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~ 160 (311)
T KOG0315|consen 84 KNVTAVGFQCDGRWMYTGSEDGTVKIWDLRS---LSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTH 160 (311)
T ss_pred CceEEEEEeecCeEEEecCCCceEEEEeccC---cccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCcccc
Confidence 34554433 333333334677777775321 1111112211222222233344556666789999999876544333
Q ss_pred eeeeecCCceeEEEEeCCc--EEEEEeeCCcEEEecCCC
Q 001476 430 QQLYSMCGRNVVSISAGKY--WTAAVTATGDVYMWDGKK 466 (1071)
Q Consensus 430 ~~v~~l~g~~Vv~IaaG~~--hs~aLT~dG~Vy~WG~N~ 466 (1071)
..++. .+..|.+++.+.. ..+++++.|.+|+|-.-+
T Consensus 161 ~liPe-~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~ 198 (311)
T KOG0315|consen 161 ELIPE-DDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLN 198 (311)
T ss_pred ccCCC-CCcceeeEEEcCCCcEEEEecCCccEEEEEccC
Confidence 33322 2356777777654 455678899999998544
No 151
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=87.38 E-value=93 Score=39.39 Aligned_cols=72 Identities=21% Similarity=0.215 Sum_probs=43.4
Q ss_pred cEEEEEeCCCcceEEe--cCCcEEEEeCCCCCCceeeeeecCCceeEEEEeCCcEEEEEeeCCcEEEecCCCCC
Q 001476 397 HVVSIAAGMVHSTALT--EDGALFYWASSDPDLRCQQLYSMCGRNVVSISAGKYWTAAVTATGDVYMWDGKKSK 468 (1071)
Q Consensus 397 ~I~~Ia~G~~hslaLt--~dG~Vy~WG~n~~~~~p~~v~~l~g~~Vv~IaaG~~hs~aLT~dG~Vy~WG~N~~~ 468 (1071)
.|..++-...-.++.| +||+|-+|.....-...+.-....+...+++..-.+..+...=||.|-+|..+++.
T Consensus 352 ~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYr 425 (893)
T KOG0291|consen 352 RITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYR 425 (893)
T ss_pred ceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccc
Confidence 4445554444444444 66777777654322222222334455667777777777777789999999988754
No 152
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=87.24 E-value=1.1 Score=42.21 Aligned_cols=52 Identities=23% Similarity=0.309 Sum_probs=45.4
Q ss_pred cccchhHHHHHHHHHHhhc-CCC-cccHHHHHHHHHhcCchhHHHHHHHHHHhh
Q 001476 549 GVRLAPSLKSLCENVAAQC-LVE-PRNALQLLEISDSLGADDLKKHCEDIAIRN 600 (1071)
Q Consensus 549 d~y~~~~LK~lCE~~l~~~-~v~-~~nv~~il~lA~~~~~~~Lk~~C~~f~~~n 600 (1071)
+....+.++.+.+..+... .++ .+++..++.+|+.++.+.|+++|.+|+.+|
T Consensus 57 ~~~~~~~~~~~l~~~Y~~~~~~~~~~~~~~ll~lA~~~~~~~L~~~~~~~l~~~ 110 (111)
T PF00651_consen 57 PDVSPEAFEAFLEYMYTGEIEINSDENVEELLELADKLQIPELKKACEKFLQES 110 (111)
T ss_dssp TTSCHHHHHHHHHHHHHSEEEEE-TTTHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccCCcccCCHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhC
Confidence 4556788999999999776 455 889999999999999999999999999876
No 153
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=86.38 E-value=0.069 Score=67.20 Aligned_cols=136 Identities=17% Similarity=0.214 Sum_probs=93.9
Q ss_pred CCceEEEEecCCceEEEEecCCcEEEEecCCCCCCCCCCCccCCCCcceeeeeeeecCCCCCCEEEEEecCceEEEEEcC
Q 001476 186 HGFVIKLISAAKFHSVAVTSLGEVYTWGYGRGGRLGHPDFDIHSGQAAVITPRRVTSGLGSRRVKTIAAAKHHTVLATEG 265 (1071)
Q Consensus 186 ~~~~I~~Va~G~~HslaLT~dG~Vy~WG~N~~GQLG~g~~~~~s~~~~~~~P~~V~~~l~~~~Iv~IAcG~~HslaLT~d 265 (1071)
.+.++..|.+-.+..++|..+|++|.|-+...--|..+.. .......|..-..++.+.+|+.+++..--.-++|++
T Consensus 372 dan~~I~I~A~s~el~AlhrkGelYqWaWdESEglddpla----i~kn~dHPd~a~iG~hge~ii~lSanniR~si~T~n 447 (3015)
T KOG0943|consen 372 DANKFICIGALSSELLALHRKGELYQWAWDESEGLDDPLA----INKNLDHPDAAFIGLHGEKIILLSANNIRASIATEN 447 (3015)
T ss_pred CCCeeEEeehhHHHHHHHhhCCceeeeecccccCCCChhh----cccCCCCCccceecccCCeeEEeecCceeeeeeecC
Confidence 3457778877788889999999999999876544433211 122334455444577889999999999999999999
Q ss_pred CcEEEEeCCCCCCcCCCCC--CCCCcceeeccCcccEEEEEEcCCceeEEecCCcEEEEeCCCCCC
Q 001476 266 GEVFTWGSNREGQLGYTSV--DTQPTPRRVSSLKLKIIAVAAANKHTAVVSESGEVFTWGCNREGQ 329 (1071)
Q Consensus 266 G~VyswG~N~~GQLG~g~~--~~~~~P~~V~~l~~~Iv~VacG~~HSlaLt~dG~VY~WG~N~~GQ 329 (1071)
|+|-+|=+- +|.+-. -....-+.+..-...+++..|...|+++..+|+.+|.||.-.+-|
T Consensus 448 ghlasWlDE----cgagV~fkLa~ea~Tkieed~~maVqd~~~adhlaAf~~dniihWcGiVPf~e 509 (3015)
T KOG0943|consen 448 GHLASWLDE----CGAGVAFKLAHEAQTKIEEDGEMAVQDHCCADHLAAFLEDNIIHWCGIVPFSE 509 (3015)
T ss_pred CchhhHHhh----hhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHhhhceeeEEeeeeehh
Confidence 999999432 222211 111122333333456788889999999999999999999765544
No 154
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=85.46 E-value=1.2e+02 Score=38.62 Aligned_cols=109 Identities=18% Similarity=0.185 Sum_probs=59.1
Q ss_pred EEEEEcCCcEEEEeCCCCCCcCCCCCCCCCcceeeccCcccEEEEEEcCCceeEE--ecCCcEEEEeCCCCCCcCCCCCC
Q 001476 259 TVLATEGGEVFTWGSNREGQLGYTSVDTQPTPRRVSSLKLKIIAVAAANKHTAVV--SESGEVFTWGCNREGQLGYGTSN 336 (1071)
Q Consensus 259 slaLT~dG~VyswG~N~~GQLG~g~~~~~~~P~~V~~l~~~Iv~VacG~~HSlaL--t~dG~VY~WG~N~~GQLG~g~~~ 336 (1071)
++.+...|.-.++|...-|||+.-.......-..-.+-...|..++-..+-.++. .+||+|-+|-.. .|-|
T Consensus 312 t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~-SgfC------ 384 (893)
T KOG0291|consen 312 TVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQ-SGFC------ 384 (893)
T ss_pred EEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEecc-CceE------
Confidence 3444556888888888888887643222111111111112455555444433333 467777777433 1111
Q ss_pred CCCcccceeeeccCCCCEEEEEecCCeEEEEeeCCcEEEEecC
Q 001476 337 SASNYTPRVVESLKGKDLVGVAAAKYHTIVLGADGERVIVARN 379 (1071)
Q Consensus 337 ~~~~~~P~~V~~l~~~~I~~IaaG~~hTlaLt~dG~Vy~wG~n 379 (1071)
.-+.-+.-.+...++...-.+..+...-||.|-.|--.
T Consensus 385 -----~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlk 422 (893)
T KOG0291|consen 385 -----FVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLK 422 (893)
T ss_pred -----EEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeec
Confidence 01111112344566777777888888889999999754
No 155
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=84.98 E-value=68 Score=37.27 Aligned_cols=55 Identities=18% Similarity=0.168 Sum_probs=31.8
Q ss_pred CCcceEEecCCcEEEEeCCCCCCceeeeeecCCc--eeEEEEeCCcEEEEEeeCCcEEEe
Q 001476 405 MVHSTALTEDGALFYWASSDPDLRCQQLYSMCGR--NVVSISAGKYWTAAVTATGDVYMW 462 (1071)
Q Consensus 405 ~~hslaLt~dG~Vy~WG~n~~~~~p~~v~~l~g~--~Vv~IaaG~~hs~aLT~dG~Vy~W 462 (1071)
..+.++.+.+|.||++-..+....- ... +.+. ...-+..+ .+.++.+.+|+||+|
T Consensus 320 g~~l~~~~~~G~l~~~d~~tG~~~~-~~~-~~~~~~~~sp~~~~-~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 320 GGYLVVGDFEGYLHWLSREDGSFVA-RLK-TDGSGIASPPVVVG-DGLLVQTRDGDLYAF 376 (377)
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEE-EEE-cCCCccccCCEEEC-CEEEEEeCCceEEEe
Confidence 3577777889999998755433211 111 1111 11112333 567788889999986
No 156
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=84.87 E-value=0.23 Score=62.83 Aligned_cols=125 Identities=14% Similarity=0.152 Sum_probs=88.6
Q ss_pred ccEEEEEEcCCceeEEecCCcEEEEeCCCCCCcCCCCCCCCCcccceee-eccCCCCEEEEEecCCeEEEEeeCCcEEEE
Q 001476 298 LKIIAVAAANKHTAVVSESGEVFTWGCNREGQLGYGTSNSASNYTPRVV-ESLKGKDLVGVAAAKYHTIVLGADGERVIV 376 (1071)
Q Consensus 298 ~~Iv~VacG~~HSlaLt~dG~VY~WG~N~~GQLG~g~~~~~~~~~P~~V-~~l~~~~I~~IaaG~~hTlaLt~dG~Vy~w 376 (1071)
.+++.|.+-++..++|..+|++|.|-|...--|...-....+...|..- -.+.+.+|+.+++..-..-++|.+|.+..|
T Consensus 374 n~~I~I~A~s~el~AlhrkGelYqWaWdESEglddplai~kn~dHPd~a~iG~hge~ii~lSanniR~si~T~nghlasW 453 (3015)
T KOG0943|consen 374 NKFICIGALSSELLALHRKGELYQWAWDESEGLDDPLAINKNLDHPDAAFIGLHGEKIILLSANNIRASIATENGHLASW 453 (3015)
T ss_pred CeeEEeehhHHHHHHHhhCCceeeeecccccCCCChhhcccCCCCCccceecccCCeeEEeecCceeeeeeecCCchhhH
Confidence 5788999999999999999999999998665554433333333445443 356788999999999999999999999998
Q ss_pred ecCCCCCC-----CccceeccccCCcEEEEEeCCCcceEEecCCcEEEEeC
Q 001476 377 ARNLKKSG-----STPLKFHRKIKLHVVSIAAGMVHSTALTEDGALFYWAS 422 (1071)
Q Consensus 377 G~n~~~~~-----~~P~~~~~~~~~~I~~Ia~G~~hslaLt~dG~Vy~WG~ 422 (1071)
-....... ..........+..+++.-|...|.++..+|+-+|-||-
T Consensus 454 lDEcgagV~fkLa~ea~Tkieed~~maVqd~~~adhlaAf~~dniihWcGi 504 (3015)
T KOG0943|consen 454 LDECGAGVAFKLAHEAQTKIEEDGEMAVQDHCCADHLAAFLEDNIIHWCGI 504 (3015)
T ss_pred HhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHhhhceeeEEee
Confidence 54311111 11111122233456677788889999999999999994
No 157
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=83.92 E-value=0.89 Score=51.38 Aligned_cols=65 Identities=17% Similarity=0.116 Sum_probs=58.8
Q ss_pred cccccchhHHHHHHHHHHhhcCCCcccHHHHHHHHHhcCchhHHHHHHHHHHh--hhhhhhhcccchhcc
Q 001476 547 DSGVRLAPSLKSLCENVAAQCLVEPRNALQLLEISDSLGADDLKKHCEDIAIR--NLDYILTVSSHSFAS 614 (1071)
Q Consensus 547 aAd~y~~~~LK~lCE~~l~~~~v~~~nv~~il~lA~~~~~~~Lk~~C~~f~~~--nld~v~~~~~~~f~~ 614 (1071)
+|++|...+||..|+..++.. ++..+++..|+.|+.++...++..|..++.. ++|.+. ....+..
T Consensus 180 ~~f~~~~~~lk~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ld~l~--~~~~~~~ 246 (297)
T KOG1987|consen 180 AAFKYKNRHLKLACMPVLLSL-IETLNVSQSLQEASNYDLKEAKSALTYVIAAGFKLDWLE--KKLNEVK 246 (297)
T ss_pred hccccccHHHHHHHHHHHHHH-HHhhhhcccHHHhchhHHHHHHHHHHHHHhccchHhHHH--HHHHHHH
Confidence 789999999999999999996 9999999999999999999999999999875 999998 5555533
No 158
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=83.55 E-value=98 Score=38.09 Aligned_cols=107 Identities=17% Similarity=0.185 Sum_probs=68.1
Q ss_pred ecCceEEEEEcCCcEEEEeCCCCCCcCCCCCCCC-CcceeeccCcccEEEEEEcC-CceeEEecCCcEEE-EeCCCCCCc
Q 001476 254 AAKHHTVLATEGGEVFTWGSNREGQLGYTSVDTQ-PTPRRVSSLKLKIIAVAAAN-KHTAVVSESGEVFT-WGCNREGQL 330 (1071)
Q Consensus 254 cG~~HslaLT~dG~VyswG~N~~GQLG~g~~~~~-~~P~~V~~l~~~Iv~VacG~-~HSlaLt~dG~VY~-WG~N~~GQL 330 (1071)
.|.....+|..+|.+|-= -|....... ...+.|... ..+.+|++|. .-..+++.+|.||. -|-..+.+.
T Consensus 190 ~g~~~awAI~s~Gd~y~R-------tGvs~~~P~GraW~~i~~~-t~L~qISagPtg~VwAvt~nG~vf~R~GVsRqNp~ 261 (705)
T KOG3669|consen 190 LGDDTAWAIRSSGDLYLR-------TGVSVDRPCGRAWKVICPY-TDLSQISAGPTGVVWAVTENGAVFYREGVSRQNPE 261 (705)
T ss_pred CCceEEEEEecCCcEEEe-------ccccCCCCCCceeeecCCC-CccceEeecCcceEEEEeeCCcEEEEecccccCCC
Confidence 455666777888887741 122111111 111222222 2688999999 56678999999764 577666666
Q ss_pred CCCCCCCCCcccceeeeccCCCCEEEEEecCCeEEEEeeCCcEEEE
Q 001476 331 GYGTSNSASNYTPRVVESLKGKDLVGVAAAKYHTIVLGADGERVIV 376 (1071)
Q Consensus 331 G~g~~~~~~~~~P~~V~~l~~~~I~~IaaG~~hTlaLt~dG~Vy~w 376 (1071)
|..=. ...+|+... .++.|+.|.....+|+.+|.+|.-
T Consensus 262 GdsWk---dI~tP~~a~-----~~v~iSvGt~t~Waldndg~lwfr 299 (705)
T KOG3669|consen 262 GDSWK---DIVTPRQAL-----EPVCISVGTQTLWALDNDGNLWFR 299 (705)
T ss_pred Cchhh---hccCccccc-----ceEEEEeccceEEEEecCCcEEEE
Confidence 64321 234454443 289999999999999999999874
No 159
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=83.18 E-value=1.1e+02 Score=36.58 Aligned_cols=198 Identities=11% Similarity=0.098 Sum_probs=95.8
Q ss_pred CCEEEEEe-cCceEEEEEcCCcEEEEeCCCCCCcCCCCCCCCCcceeeccC---cccEEEEEEcCCceeEEecCCcEEEE
Q 001476 247 RRVKTIAA-AKHHTVLATEGGEVFTWGSNREGQLGYTSVDTQPTPRRVSSL---KLKIIAVAAANKHTAVVSESGEVFTW 322 (1071)
Q Consensus 247 ~~Iv~IAc-G~~HslaLT~dG~VyswG~N~~GQLG~g~~~~~~~P~~V~~l---~~~Iv~VacG~~HSlaLt~dG~VY~W 322 (1071)
.+|+.+.- -..+.++|+++|.++.+ |-+|.. ....+..+... ..++-.+..+.+=.++||.++++|.-
T Consensus 81 ~~iv~~~wt~~e~LvvV~~dG~v~vy--~~~G~~------~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt~~~~~~~v 152 (410)
T PF04841_consen 81 GRIVGMGWTDDEELVVVQSDGTVRVY--DLFGEF------QFSLGEEIEEEKVLECRIFAIWFYKNGIVVLTGNNRFYVV 152 (410)
T ss_pred CCEEEEEECCCCeEEEEEcCCEEEEE--eCCCce------eechhhhccccCcccccccccccCCCCEEEECCCCeEEEE
Confidence 46666654 34578899999998876 333433 11112222111 12333445555567889999999988
Q ss_pred eCCCCCCcCCCCCCCCCcccceeeec---cCC-CCEEEEEecCCeEEEE-eeCCcEEEEecCCCCCCCccceeccccCCc
Q 001476 323 GCNREGQLGYGTSNSASNYTPRVVES---LKG-KDLVGVAAAKYHTIVL-GADGERVIVARNLKKSGSTPLKFHRKIKLH 397 (1071)
Q Consensus 323 G~N~~GQLG~g~~~~~~~~~P~~V~~---l~~-~~I~~IaaG~~hTlaL-t~dG~Vy~wG~n~~~~~~~P~~~~~~~~~~ 397 (1071)
=.... ..-.... ...|..... ... ..+ .+..+.....++ ..++.++..-.+.... +. ...+
T Consensus 153 ~n~~~-~~~~~~~----~~~p~~~~~~~~~~~~~~i-~~l~~~~~~~i~~~~g~~i~~i~~~~~~~------i~--~~~~ 218 (410)
T PF04841_consen 153 NNIDE-PVKLRRL----PEIPGLWTKFHWWPSWTVI-PLLSSDRVVEILLANGETIYIIDENSFKQ------ID--SDGP 218 (410)
T ss_pred eCccc-cchhhcc----ccCCCcccccccccccccc-eEeecCcceEEEEecCCEEEEEEcccccc------cc--CCCC
Confidence 33321 1100000 011221110 011 112 222333333333 3334455443332111 11 1236
Q ss_pred EEEEEeC--CCcceEEecCCcEEEEeCCCCCCceeeeeecCCceeEEEEeCCcEEEEEeeCCcEEEecCCCC
Q 001476 398 VVSIAAG--MVHSTALTEDGALFYWASSDPDLRCQQLYSMCGRNVVSISAGKYWTAAVTATGDVYMWDGKKS 467 (1071)
Q Consensus 398 I~~Ia~G--~~hslaLt~dG~Vy~WG~n~~~~~p~~v~~l~g~~Vv~IaaG~~hs~aLT~dG~Vy~WG~N~~ 467 (1071)
|.+|+.. +.|.++++++|.+|+.-+.-.......-.........-..||.. ++++.-...|+..|.++.
T Consensus 219 i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~d-av~l~~~~~l~lvg~~~~ 289 (410)
T PF04841_consen 219 IIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGND-AVVLSWEDELLLVGPDGD 289 (410)
T ss_pred eEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCC-cEEEEeCCEEEEECCCCC
Confidence 7776666 45677788899999876543222111111112233444568875 455555778999986654
No 160
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=82.93 E-value=84 Score=35.00 Aligned_cols=99 Identities=12% Similarity=0.152 Sum_probs=54.0
Q ss_pred CeEEEEeeCCcEEEEecC--CCCCCCccceeccccCCcEEEEEeCCCc--ceEEecCCcEEEEeCCCCC----Cceeeee
Q 001476 362 YHTIVLGADGERVIVARN--LKKSGSTPLKFHRKIKLHVVSIAAGMVH--STALTEDGALFYWASSDPD----LRCQQLY 433 (1071)
Q Consensus 362 ~hTlaLt~dG~Vy~wG~n--~~~~~~~P~~~~~~~~~~I~~Ia~G~~h--slaLt~dG~Vy~WG~n~~~----~~p~~v~ 433 (1071)
.+-+.-+.+|.|++|--. .......|.. ...|.++.....- .++.++.|++|+|-.-... +.|..-.
T Consensus 137 teLis~dqsg~irvWDl~~~~c~~~liPe~-----~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~ 211 (311)
T KOG0315|consen 137 TELISGDQSGNIRVWDLGENSCTHELIPED-----DTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKF 211 (311)
T ss_pred ceEEeecCCCcEEEEEccCCccccccCCCC-----CcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhhe
Confidence 344555678999998643 3333333322 2456676666544 4577788999999764422 2222111
Q ss_pred ecCCceeEEE--EeCCcEEEEEeeCCcEEEecCC
Q 001476 434 SMCGRNVVSI--SAGKYWTAAVTATGDVYMWDGK 465 (1071)
Q Consensus 434 ~l~g~~Vv~I--aaG~~hs~aLT~dG~Vy~WG~N 465 (1071)
..-...+.+. +-...|.+...+|-+|++|...
T Consensus 212 ~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~ 245 (311)
T KOG0315|consen 212 QAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTD 245 (311)
T ss_pred ecccceEEEEEECCCCcEEEeecCCceEEEEecC
Confidence 1222233332 2334455556677788888643
No 161
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=81.81 E-value=2 Score=48.86 Aligned_cols=81 Identities=19% Similarity=0.194 Sum_probs=64.3
Q ss_pred cccccccchhHHHHHHHHHHhhc-CCCcccHHHHHHHHHhcCchhHHHHHHHHHHhhhhhhhhccc-chhccccHHHHHH
Q 001476 545 KDDSGVRLAPSLKSLCENVAAQC-LVEPRNALQLLEISDSLGADDLKKHCEDIAIRNLDYILTVSS-HSFASASLDILAD 622 (1071)
Q Consensus 545 ~~aAd~y~~~~LK~lCE~~l~~~-~v~~~nv~~il~lA~~~~~~~Lk~~C~~f~~~nld~v~~~~~-~~f~~l~~~~l~e 622 (1071)
.+..-...+..+.-|-+++-.+. .++++||+.||--++.+..+.|.+.|+.|+..|+.+|+ .+ -.+.-|..++|.-
T Consensus 47 idisVhCDv~iF~WLm~yv~~~~p~l~~~NvvsIliSS~FL~M~~Lve~cl~y~~~~~~~Iv--~~~~nl~Cl~~~Ll~R 124 (317)
T PF11822_consen 47 IDISVHCDVHIFEWLMRYVKGEPPSLTPSNVVSILISSEFLQMESLVEECLQYCHDHMSEIV--ASPCNLNCLNDNLLTR 124 (317)
T ss_pred cceEEecChhHHHHHHHHhhcCCCcCCcCcEEEeEehhhhhccHHHHHHHHHHHHHhHHHHH--cCCCCcccCCHHHHHH
Confidence 44556777888887777776554 68999999999999999999999999999999999999 54 4455666767666
Q ss_pred HHHHh
Q 001476 623 LEKSL 627 (1071)
Q Consensus 623 l~~~~ 627 (1071)
|..++
T Consensus 125 La~~~ 129 (317)
T PF11822_consen 125 LADMF 129 (317)
T ss_pred HHHhc
Confidence 64433
No 162
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=80.97 E-value=27 Score=39.88 Aligned_cols=17 Identities=6% Similarity=0.118 Sum_probs=11.8
Q ss_pred ceEEecCCcEEEEeCCC
Q 001476 408 STALTEDGALFYWASSD 424 (1071)
Q Consensus 408 slaLt~dG~Vy~WG~n~ 424 (1071)
+.+...++.+|++|..+
T Consensus 217 ~~~~~~~~~iyv~GG~~ 233 (323)
T TIGR03548 217 ASIKINESLLLCIGGFN 233 (323)
T ss_pred eEEEECCCEEEEECCcC
Confidence 33444678999998754
No 163
>PHA02713 hypothetical protein; Provisional
Probab=79.81 E-value=2.1 Score=53.18 Aligned_cols=54 Identities=19% Similarity=0.222 Sum_probs=49.3
Q ss_pred cchhHHHHHHHHHHhhcCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhhhhhhh
Q 001476 551 RLAPSLKSLCENVAAQCLVEPRNALQLLEISDSLGADDLKKHCEDIAIRNLDYIL 605 (1071)
Q Consensus 551 y~~~~LK~lCE~~l~~~~v~~~nv~~il~lA~~~~~~~Lk~~C~~f~~~nld~v~ 605 (1071)
...+.|+.|.++.+... |+.+||..+|..|+.+.-+.|++.|.+|+.++|+.-.
T Consensus 74 v~~~~~~~ll~y~Yt~~-i~~~nv~~ll~aA~~lqi~~l~~~C~~~l~~~l~~~N 127 (557)
T PHA02713 74 FDKDAVKNIVQYLYNRH-ISSMNVIDVLKCADYLLIDDLVTDCESYIKDYTNHDT 127 (557)
T ss_pred CCHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHHHCHHHHHHHHHHHHHhhCCccc
Confidence 45689999999999997 9999999999999999999999999999998877644
No 164
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=79.45 E-value=61 Score=38.71 Aligned_cols=155 Identities=14% Similarity=0.158 Sum_probs=71.7
Q ss_pred CEEEEEecC--ceEEEEEcCCcEEEEeCCCCCCcCCCCCCCCCcceeeccCcccEEEEEEcCCceeEE--ecCCcEEEEe
Q 001476 248 RVKTIAAAK--HHTVLATEGGEVFTWGSNREGQLGYTSVDTQPTPRRVSSLKLKIIAVAAANKHTAVV--SESGEVFTWG 323 (1071)
Q Consensus 248 ~Iv~IAcG~--~HslaLT~dG~VyswG~N~~GQLG~g~~~~~~~P~~V~~l~~~Iv~VacG~~HSlaL--t~dG~VY~WG 323 (1071)
.|..+++.. ++.++=|..|++|.|=-+.---|-.-... -..|+.+....+-+.++ ..||.|++|=
T Consensus 83 ~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aH-----------YQ~ITcL~fs~dgs~iiTgskDg~V~vW~ 151 (476)
T KOG0646|consen 83 PVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAH-----------YQSITCLKFSDDGSHIITGSKDGAVLVWL 151 (476)
T ss_pred ceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhh-----------ccceeEEEEeCCCcEEEecCCCccEEEEE
Confidence 344444422 33334458899999975532111100000 02455555555555555 4688899995
Q ss_pred CCCCCCcCCCCCCCCCcccceeeeccCCCCEEEEEecCCe--EEEEe--eCCcEEEEecCCCCCCCccceeccccCCcEE
Q 001476 324 CNREGQLGYGTSNSASNYTPRVVESLKGKDLVGVAAAKYH--TIVLG--ADGERVIVARNLKKSGSTPLKFHRKIKLHVV 399 (1071)
Q Consensus 324 ~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~I~~IaaG~~h--TlaLt--~dG~Vy~wG~n~~~~~~~P~~~~~~~~~~I~ 399 (1071)
.-+-- .........|..+..-....|+++.+|..- +.++| .|..+-+|--... ..-..+..+..+.-.
T Consensus 152 l~~lv-----~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g---~LLlti~fp~si~av 223 (476)
T KOG0646|consen 152 LTDLV-----SADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLG---VLLLTITFPSSIKAV 223 (476)
T ss_pred EEeec-----ccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccc---eeeEEEecCCcceeE
Confidence 32110 111111233444433334568877776642 22222 2333334432211 111112222223444
Q ss_pred EEEeCCCcceEEecCCcEEEEe
Q 001476 400 SIAAGMVHSTALTEDGALFYWA 421 (1071)
Q Consensus 400 ~Ia~G~~hslaLt~dG~Vy~WG 421 (1071)
-+.-+..+.++=+++|.+|..-
T Consensus 224 ~lDpae~~~yiGt~~G~I~~~~ 245 (476)
T KOG0646|consen 224 ALDPAERVVYIGTEEGKIFQNL 245 (476)
T ss_pred EEcccccEEEecCCcceEEeee
Confidence 4555666777777888877643
No 165
>PHA03098 kelch-like protein; Provisional
Probab=77.93 E-value=2.5 Score=51.82 Aligned_cols=52 Identities=19% Similarity=0.195 Sum_probs=47.6
Q ss_pred chhHHHHHHHHHHhhc-CCCcccHHHHHHHHHhcCchhHHHHHHHHHHhhhhh
Q 001476 552 LAPSLKSLCENVAAQC-LVEPRNALQLLEISDSLGADDLKKHCEDIAIRNLDY 603 (1071)
Q Consensus 552 ~~~~LK~lCE~~l~~~-~v~~~nv~~il~lA~~~~~~~Lk~~C~~f~~~nld~ 603 (1071)
..+.++.+.++++... .++.+||..||.+|+.+.-+.|+++|.+|+..+++.
T Consensus 55 ~~~~~~~~l~y~Ytg~~~i~~~~~~~ll~~A~~l~~~~l~~~C~~~l~~~l~~ 107 (534)
T PHA03098 55 DYDSFNEVIKYIYTGKINITSNNVKDILSIANYLIIDFLINLCINYIIKIIDD 107 (534)
T ss_pred CHHHHHHHHHHhcCCceEEcHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhCCH
Confidence 6789999999999888 579999999999999999999999999999887664
No 166
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=77.65 E-value=95 Score=32.38 Aligned_cols=215 Identities=17% Similarity=0.146 Sum_probs=97.8
Q ss_pred ceEEEEecCCcEEEEecCCCCCCCCCCCccCCCCcceeeeeeeecCCCCCCEEEEEecCc-eEEEEEc-CCcEEEEeCCC
Q 001476 198 FHSVAVTSLGEVYTWGYGRGGRLGHPDFDIHSGQAAVITPRRVTSGLGSRRVKTIAAAKH-HTVLATE-GGEVFTWGSNR 275 (1071)
Q Consensus 198 ~HslaLT~dG~Vy~WG~N~~GQLG~g~~~~~s~~~~~~~P~~V~~~l~~~~Iv~IAcG~~-HslaLT~-dG~VyswG~N~ 275 (1071)
.+.++...+|.|+.|-...... ...+. .....|..+..... ..++... +|.|+.|-...
T Consensus 64 ~~l~~~~~~~~i~i~~~~~~~~-----------------~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 124 (289)
T cd00200 64 TYLASGSSDKTIRLWDLETGEC-----------------VRTLT--GHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVET 124 (289)
T ss_pred CEEEEEcCCCeEEEEEcCcccc-----------------eEEEe--ccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCC
Confidence 3555566689999996543200 00111 11124555554433 3344444 88888886542
Q ss_pred CCCcCCCCCCCCCcceeeccCcccEEEEEEcCC-ceeEEec-CCcEEEEeCCCCCCcCCCCCCCCCcccceeeeccCCCC
Q 001476 276 EGQLGYTSVDTQPTPRRVSSLKLKIIAVAAANK-HTAVVSE-SGEVFTWGCNREGQLGYGTSNSASNYTPRVVESLKGKD 353 (1071)
Q Consensus 276 ~GQLG~g~~~~~~~P~~V~~l~~~Iv~VacG~~-HSlaLt~-dG~VY~WG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~ 353 (1071)
...+ ..+......|..+..... ..++... +|.|+.|-.+. +++ ..........
T Consensus 125 ~~~~-----------~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~-~~~-------------~~~~~~~~~~ 179 (289)
T cd00200 125 GKCL-----------TTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRT-GKC-------------VATLTGHTGE 179 (289)
T ss_pred cEEE-----------EEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccc-ccc-------------ceeEecCccc
Confidence 1111 111112234555555443 2333333 88888885431 110 0000011123
Q ss_pred EEEEEecCC--eEEEEeeCCcEEEEecCCCCCCCccceeccccCCcEEEEEeCCC-cceEEec-CCcEEEEeCCCCCCce
Q 001476 354 LVGVAAAKY--HTIVLGADGERVIVARNLKKSGSTPLKFHRKIKLHVVSIAAGMV-HSTALTE-DGALFYWASSDPDLRC 429 (1071)
Q Consensus 354 I~~IaaG~~--hTlaLt~dG~Vy~wG~n~~~~~~~P~~~~~~~~~~I~~Ia~G~~-hslaLt~-dG~Vy~WG~n~~~~~p 429 (1071)
|..+....+ +.++...+|.++.|-..... +..........|..+..... ..++... +|.++.|-......
T Consensus 180 i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~-- 253 (289)
T cd00200 180 VNSVAFSPDGEKLLSSSSDGTIKLWDLSTGK----CLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGEC-- 253 (289)
T ss_pred cceEEECCCcCEEEEecCCCcEEEEECCCCc----eecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCcee--
Confidence 445544443 44445557888888654211 11111011224555555543 2333333 88999997653211
Q ss_pred eeeeecCCceeEEEEeCC--cEEEEEeeCCcEEEe
Q 001476 430 QQLYSMCGRNVVSISAGK--YWTAAVTATGDVYMW 462 (1071)
Q Consensus 430 ~~v~~l~g~~Vv~IaaG~--~hs~aLT~dG~Vy~W 462 (1071)
..........|..+.... ...+..+.+|.+..|
T Consensus 254 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw 288 (289)
T cd00200 254 VQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIW 288 (289)
T ss_pred EEEccccCCcEEEEEECCCCCEEEEecCCCeEEec
Confidence 111111123455555444 344445566777776
No 167
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=77.35 E-value=26 Score=43.75 Aligned_cols=103 Identities=12% Similarity=0.088 Sum_probs=53.8
Q ss_pred EEeeCCcEEEEecCCCCCC-CccceeccccCC---cEEEEEeCCCcceEEecCCcEEEEeCCCCC--CceeeeeecCCce
Q 001476 366 VLGADGERVIVARNLKKSG-STPLKFHRKIKL---HVVSIAAGMVHSTALTEDGALFYWASSDPD--LRCQQLYSMCGRN 439 (1071)
Q Consensus 366 aLt~dG~Vy~wG~n~~~~~-~~P~~~~~~~~~---~I~~Ia~G~~hslaLt~dG~Vy~WG~n~~~--~~p~~v~~l~g~~ 439 (1071)
+..-+|.+|+.|....... ..-+....+... .+........+.-+..-+|.||+.|..+.. +............
T Consensus 423 v~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~ 502 (571)
T KOG4441|consen 423 VAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQ 502 (571)
T ss_pred EEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccCCCccceEEEEcCCCCc
Confidence 3447899999987543331 111111111111 111122222222255568899999986642 2222333333344
Q ss_pred eEEEE---eCCcEEEEEeeCCcEEEecCCCCC
Q 001476 440 VVSIS---AGKYWTAAVTATGDVYMWDGKKSK 468 (1071)
Q Consensus 440 Vv~Ia---aG~~hs~aLT~dG~Vy~WG~N~~~ 468 (1071)
++.++ .+..+..+..-+|++|+-|+-...
T Consensus 503 W~~v~~m~~~rs~~g~~~~~~~ly~vGG~~~~ 534 (571)
T KOG4441|consen 503 WTMVAPMTSPRSAVGVVVLGGKLYAVGGFDGN 534 (571)
T ss_pred eeEcccCccccccccEEEECCEEEEEecccCc
Confidence 44443 455666667779999999975443
No 168
>PHA02790 Kelch-like protein; Provisional
Probab=75.34 E-value=3.7 Score=49.91 Aligned_cols=58 Identities=17% Similarity=0.154 Sum_probs=50.5
Q ss_pred cchhHHHHHHHHHHhhc-CCCcccHHHHHHHHHhcCchhHHHHHHHHHHhhhhhhhhcc
Q 001476 551 RLAPSLKSLCENVAAQC-LVEPRNALQLLEISDSLGADDLKKHCEDIAIRNLDYILTVS 608 (1071)
Q Consensus 551 y~~~~LK~lCE~~l~~~-~v~~~nv~~il~lA~~~~~~~Lk~~C~~f~~~nld~v~~~~ 608 (1071)
...+.|+.|.++.+... .|+.+||-.||+.|+.+.-+.|+++|.+|+.++|+.-.+..
T Consensus 69 v~~~~l~~lldy~YTg~l~it~~nV~~ll~aA~~Lqi~~v~~~C~~fL~~~l~~~NCl~ 127 (480)
T PHA02790 69 LDIHSLTSIVIYSYTGKVYIDSHNVVNLLRASILTSVEFIIYTCINFILRDFRKEYCVE 127 (480)
T ss_pred cCHHHHHHHHHhheeeeEEEecccHHHHHHHHHHhChHHHHHHHHHHHHhhCCcchHHH
Confidence 44578999999999888 78899999999999999999999999999998877654333
No 169
>PLN02193 nitrile-specifier protein
Probab=74.07 E-value=1.2e+02 Score=36.92 Aligned_cols=59 Identities=7% Similarity=0.124 Sum_probs=32.8
Q ss_pred CcceEEecCCcEEEEeCCCC-CCceeeeeecCCceeEEEEeC-------CcEEEEEeeCCcEEEecCCC
Q 001476 406 VHSTALTEDGALFYWASSDP-DLRCQQLYSMCGRNVVSISAG-------KYWTAAVTATGDVYMWDGKK 466 (1071)
Q Consensus 406 ~hslaLt~dG~Vy~WG~n~~-~~~p~~v~~l~g~~Vv~IaaG-------~~hs~aLT~dG~Vy~WG~N~ 466 (1071)
.|++++ -+|++|+.|..+. .+....+..+.......+.+. ..|+++ .-++++|++|+..
T Consensus 321 ~~~~~~-~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~-~~~~~iyv~GG~~ 387 (470)
T PLN02193 321 GAGLEV-VQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASA-AVGKHIVIFGGEI 387 (470)
T ss_pred CcEEEE-ECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEE-EECCEEEEECCcc
Confidence 455544 4789998875321 122223344444455555432 235544 4578999999754
No 170
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=74.03 E-value=5.6 Score=47.33 Aligned_cols=51 Identities=10% Similarity=0.083 Sum_probs=42.1
Q ss_pred HHHHHHHHHHhhc-CCCcccHHHHHHHHHhcCchhHHHHHHHHHHhhhhhhh
Q 001476 555 SLKSLCENVAAQC-LVEPRNALQLLEISDSLGADDLKKHCEDIAIRNLDYIL 605 (1071)
Q Consensus 555 ~LK~lCE~~l~~~-~v~~~nv~~il~lA~~~~~~~Lk~~C~~f~~~nld~v~ 605 (1071)
..-.+...++++. -++.+|+..+|..|+.|--..|++.|.+|+..|+-+..
T Consensus 170 aFl~~L~flYsdev~~~~dtvi~tl~~AkKY~VpaLer~CVkflr~~l~~~n 221 (521)
T KOG2075|consen 170 AFLAFLRFLYSDEVKLAADTVITTLYAAKKYLVPALERQCVKFLRKNLMADN 221 (521)
T ss_pred HhHHHHHHHhcchhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCChH
Confidence 3444555556555 46899999999999999999999999999999987766
No 171
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=73.70 E-value=2.3e+02 Score=37.75 Aligned_cols=188 Identities=16% Similarity=0.107 Sum_probs=86.8
Q ss_pred cccEEEEEEcCCc--eeEEecCCcEEEEeCCCCCCc-CCCCCCCCCcccc---eeeeccCCCCEEEEEecCCeEE-EEee
Q 001476 297 KLKIIAVAAANKH--TAVVSESGEVFTWGCNREGQL-GYGTSNSASNYTP---RVVESLKGKDLVGVAAAKYHTI-VLGA 369 (1071)
Q Consensus 297 ~~~Iv~VacG~~H--SlaLt~dG~VY~WG~N~~GQL-G~g~~~~~~~~~P---~~V~~l~~~~I~~IaaG~~hTl-aLt~ 369 (1071)
...|.+|+.+..+ .++++.+|.|+.|-.....-. +............ ..........+.++..-....+ ++..
T Consensus 426 ~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (928)
T PF04762_consen 426 PSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSD 505 (928)
T ss_pred CCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEe
Confidence 4689999999988 688999998877764322111 0000000000000 0001112234555544443333 3322
Q ss_pred CC----cEEEEecCCCCCCCccceeccccCCcEEEEE-eCCCc-ceEEecCCcEEEEeCCCCCCceeeeeecCCceeEEE
Q 001476 370 DG----ERVIVARNLKKSGSTPLKFHRKIKLHVVSIA-AGMVH-STALTEDGALFYWASSDPDLRCQQLYSMCGRNVVSI 443 (1071)
Q Consensus 370 dG----~Vy~wG~n~~~~~~~P~~~~~~~~~~I~~Ia-~G~~h-slaLt~dG~Vy~WG~n~~~~~p~~v~~l~g~~Vv~I 443 (1071)
.+ .+..+....... .............+..++ ++..+ .++-+.+|++|..-.+.......+....+. .+.-+
T Consensus 506 ~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~G~v~~~~~~~~~~~~~~fp~~c~-~~~~~ 583 (928)
T PF04762_consen 506 SDSNQSKIVLVDIDDSEN-SASVESSTEVDGVVLIISSSPDSGSLYIQTNDGKVFQLSSDGELSQIVKFPQPCP-WMEVC 583 (928)
T ss_pred cCcccceEEEEEeccCCC-ceeEEEEeccCceEEEEeeCCCCcEEEEEECCCEEEEeecCCCccccccCCCCCc-EEEEE
Confidence 22 122222111111 111111111122333333 33333 567788999996544432221122222221 12222
Q ss_pred EeCC----cEEEEEeeCCcEEEecCCCCCCCCCceEEecCcccEEEEEecCCeEEEEEeC
Q 001476 444 SAGK----YWTAAVTATGDVYMWDGKKSKDNPPLVTRLHGIKKATSVSVGETHLLIVGSL 499 (1071)
Q Consensus 444 aaG~----~hs~aLT~dG~Vy~WG~N~~~~~~~~p~~v~g~~~V~~Va~G~~HtlaL~s~ 499 (1071)
..+. .+.+.|+..|++|+=+ ..+. .++++++....|-++.+..
T Consensus 584 ~~~~~~~~~~~~GLs~~~~Ly~n~-----------~~la--~~~tSF~v~~~~Ll~TT~~ 630 (928)
T PF04762_consen 584 QINGSEDKRVLFGLSSNGRLYANS-----------RLLA--SNCTSFAVTDSFLLFTTTQ 630 (928)
T ss_pred EECCccceeEEEEECCCCEEEECC-----------EEEe--cCCceEEEEcCEEEEEecC
Confidence 2232 3688899999999722 1111 4788888888887776654
No 172
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=68.32 E-value=63 Score=38.16 Aligned_cols=111 Identities=20% Similarity=0.218 Sum_probs=57.6
Q ss_pred cEEEEEeCCCcceEEe--cCCcEEEEeCCCCCCceeeeeecCCce-eEEEEeCCcEEEEE--eeCCcEEEecCCCCCCCC
Q 001476 397 HVVSIAAGMVHSTALT--EDGALFYWASSDPDLRCQQLYSMCGRN-VVSISAGKYWTAAV--TATGDVYMWDGKKSKDNP 471 (1071)
Q Consensus 397 ~I~~Ia~G~~hslaLt--~dG~Vy~WG~n~~~~~p~~v~~l~g~~-Vv~IaaG~~hs~aL--T~dG~Vy~WG~N~~~~~~ 471 (1071)
.|..++...+.-++|. .+..+..|-..+.-+.....-.-.+.. |..-..|.+..++. .+|++||+|-.-.+.
T Consensus 397 ~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgk--- 473 (519)
T KOG0293|consen 397 PITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGK--- 473 (519)
T ss_pred ceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCc---
Confidence 5666665554444443 677889998764322111111111222 33334455544444 478999999754432
Q ss_pred CceEEecCccc-EEEEEec--CCeEEEEEeCCCCccCCCCCCC
Q 001476 472 PLVTRLHGIKK-ATSVSVG--ETHLLIVGSLYHPIYPPNVAKN 511 (1071)
Q Consensus 472 ~~p~~v~g~~~-V~~Va~G--~~HtlaL~s~~~~v~~wG~~~~ 511 (1071)
....++|..+ |--|+-. .-|++|-+++++++--||....
T Consensus 474 -ll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 474 -LLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred -eeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence 2233444322 2222222 3456666777788777876543
No 173
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=66.81 E-value=21 Score=38.92 Aligned_cols=31 Identities=6% Similarity=-0.004 Sum_probs=26.5
Q ss_pred CCCEEEEEecCCeEEEEeeCCcEEEEecCCC
Q 001476 351 GKDLVGVAAAKYHTIVLGADGERVIVARNLK 381 (1071)
Q Consensus 351 ~~~I~~IaaG~~hTlaLt~dG~Vy~wG~n~~ 381 (1071)
+.++..+.|...+.+++|.+|.+|+|--...
T Consensus 12 gs~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~ 42 (219)
T PF07569_consen 12 GSPVSFLECNGSYLLAITSSGLLYVWNLKKG 42 (219)
T ss_pred CCceEEEEeCCCEEEEEeCCCeEEEEECCCC
Confidence 4578889999999999999999999975543
No 174
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=66.69 E-value=84 Score=40.51 Aligned_cols=144 Identities=16% Similarity=0.243 Sum_probs=75.3
Q ss_pred EcCCceeEEecCCc-EEEEeCCCCCCcCCCCCCCCCcccceeeeccCCCCEEEEEecCCeEEEEeeCCcE--EEEecCCC
Q 001476 305 AANKHTAVVSESGE-VFTWGCNREGQLGYGTSNSASNYTPRVVESLKGKDLVGVAAAKYHTIVLGADGER--VIVARNLK 381 (1071)
Q Consensus 305 cG~~HSlaLt~dG~-VY~WG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~I~~IaaG~~hTlaLt~dG~V--y~wG~n~~ 381 (1071)
.++...++++.+|+ |+++|.+ |-.-.-...+ ..-.|..+.. .+..|..|++-.+|.+.-+.++.| |-++....
T Consensus 13 t~G~t~i~~d~~gefi~tcgsd--g~ir~~~~~s-d~e~P~ti~~-~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~ 88 (933)
T KOG1274|consen 13 TGGLTLICYDPDGEFICTCGSD--GDIRKWKTNS-DEEEPETIDI-SGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEE 88 (933)
T ss_pred cCceEEEEEcCCCCEEEEecCC--CceEEeecCC-cccCCchhhc-cCceeEEEeecccceEEeeccceEEEeeCCCCCc
Confidence 34455666777775 4555554 2221111111 1134555543 467899999999988888888875 44444332
Q ss_pred CCCCccceeccccCCcEEEEEeCCCcceEEecCCcEEEEeCCCCCCceeeeee------cC--CceeEEEE--eCCcEEE
Q 001476 382 KSGSTPLKFHRKIKLHVVSIAAGMVHSTALTEDGALFYWASSDPDLRCQQLYS------MC--GRNVVSIS--AGKYWTA 451 (1071)
Q Consensus 382 ~~~~~P~~~~~~~~~~I~~Ia~G~~hslaLt~dG~Vy~WG~n~~~~~p~~v~~------l~--g~~Vv~Ia--aG~~hs~ 451 (1071)
.....++.++ .++ +++.-+|+..+.|+.+..+....... +. ...|..|. .-..+.+
T Consensus 89 ~~iL~Rftlp----~r~----------~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLA 154 (933)
T KOG1274|consen 89 DTILARFTLP----IRD----------LAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLA 154 (933)
T ss_pred cceeeeeecc----ceE----------EEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEE
Confidence 2222232222 222 23445555555665554332221111 11 12344443 3456777
Q ss_pred EEeeCCcEEEecCCC
Q 001476 452 AVTATGDVYMWDGKK 466 (1071)
Q Consensus 452 aLT~dG~Vy~WG~N~ 466 (1071)
+.+-+|+|++|.-.+
T Consensus 155 vss~dG~v~iw~~~~ 169 (933)
T KOG1274|consen 155 VSSCDGKVQIWDLQD 169 (933)
T ss_pred EEecCceEEEEEccc
Confidence 788899999997543
No 175
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=64.05 E-value=57 Score=37.27 Aligned_cols=104 Identities=9% Similarity=-0.016 Sum_probs=48.2
Q ss_pred CeEEEEeeCCcEEEEecCCCCCCCccceeccccCCcEEEEE----eCCCcceEEecCCcEEEEeCCCCCC-ceeeeeecC
Q 001476 362 YHTIVLGADGERVIVARNLKKSGSTPLKFHRKIKLHVVSIA----AGMVHSTALTEDGALFYWASSDPDL-RCQQLYSMC 436 (1071)
Q Consensus 362 ~hTlaLt~dG~Vy~wG~n~~~~~~~P~~~~~~~~~~I~~Ia----~G~~hslaLt~dG~Vy~WG~n~~~~-~p~~v~~l~ 436 (1071)
.|++++ .++.||++|.........-+....+....-..+. ....+..+..-+++||++|..+... .......+.
T Consensus 116 ~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~ 194 (323)
T TIGR03548 116 NGSACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPK 194 (323)
T ss_pred CceEEE-ECCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecC
Confidence 344444 5789999987532211111111111111122221 1122334445678999999654221 111233333
Q ss_pred CceeEEEEe---C------CcEEEEEeeCCcEEEecCCC
Q 001476 437 GRNVVSISA---G------KYWTAAVTATGDVYMWDGKK 466 (1071)
Q Consensus 437 g~~Vv~Iaa---G------~~hs~aLT~dG~Vy~WG~N~ 466 (1071)
......+.. + ..++.+...++++|++|+..
T Consensus 195 ~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~ 233 (323)
T TIGR03548 195 KNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFN 233 (323)
T ss_pred CCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcC
Confidence 334444432 1 12333444578999999765
No 176
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=63.95 E-value=50 Score=44.14 Aligned_cols=141 Identities=18% Similarity=0.219 Sum_probs=72.4
Q ss_pred eeEEecCCcEEEEeCCCCCCcCCCCCCCCCcccceeeeccCCCCEEEEEecCCeEEEEeeCCcEEEEecCCCCCCCccce
Q 001476 310 TAVVSESGEVFTWGCNREGQLGYGTSNSASNYTPRVVESLKGKDLVGVAAAKYHTIVLGADGERVIVARNLKKSGSTPLK 389 (1071)
Q Consensus 310 SlaLt~dG~VY~WG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~I~~IaaG~~hTlaLt~dG~Vy~wG~n~~~~~~~P~~ 389 (1071)
-+.+|-|+++|.|-.++.+++-.-+.-+.....-..|..-.|.-+-. -.|.++|..--+++..|-........-..
T Consensus 92 RaWiTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~----IqhlLvvaT~~ei~ilgV~~~~~~~~~~~ 167 (1311)
T KOG1900|consen 92 RAWITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPE----IQHLLVVATPVEIVILGVSFDEFTGELSI 167 (1311)
T ss_pred ceEEEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhh----hheeEEecccceEEEEEEEeccccCcccc
Confidence 35688999999999988777654332221111111111111211111 25788888888888887543222111111
Q ss_pred ecc-----ccCCcEEEEEeCCCcceEEecCCcEEEEeCCCC----------C------------------Cceeeeee--
Q 001476 390 FHR-----KIKLHVVSIAAGMVHSTALTEDGALFYWASSDP----------D------------------LRCQQLYS-- 434 (1071)
Q Consensus 390 ~~~-----~~~~~I~~Ia~G~~hslaLt~dG~Vy~WG~n~~----------~------------------~~p~~v~~-- 434 (1071)
+.. ..+..|..|.+ +++|+||.-|.++. + +.|. +..
T Consensus 168 f~~~~~i~~dg~~V~~I~~--------t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs-~~~~~ 238 (1311)
T KOG1900|consen 168 FNTSFKISVDGVSVNCITY--------TENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPS-LLSVP 238 (1311)
T ss_pred cccceeeecCCceEEEEEe--------ccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhh-hhcCC
Confidence 110 11234444443 45555555554331 0 1222 222
Q ss_pred -cCCceeEEEEeCCcEEEE--EeeCCcEEEec
Q 001476 435 -MCGRNVVSISAGKYWTAA--VTATGDVYMWD 463 (1071)
Q Consensus 435 -l~g~~Vv~IaaG~~hs~a--LT~dG~Vy~WG 463 (1071)
.....|.+|+.+....+. +++.|.|-+|-
T Consensus 239 ~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~ 270 (1311)
T KOG1900|consen 239 GSSKDPIRQITIDNSRNILYVLSEKGTVSAYD 270 (1311)
T ss_pred CCCCCcceeeEeccccceeeeeccCceEEEEE
Confidence 224579999998876665 66778777774
No 177
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=62.16 E-value=3.7e+02 Score=32.90 Aligned_cols=69 Identities=13% Similarity=0.249 Sum_probs=45.6
Q ss_pred CCcEEEEEeCCCcceEEecCCcEEEEeCCCCCCceeeeeecCCceeEEEEeCCcEEEEEeeCC--cEEEec
Q 001476 395 KLHVVSIAAGMVHSTALTEDGALFYWASSDPDLRCQQLYSMCGRNVVSISAGKYWTAAVTATG--DVYMWD 463 (1071)
Q Consensus 395 ~~~I~~Ia~G~~hslaLt~dG~Vy~WG~n~~~~~p~~v~~l~g~~Vv~IaaG~~hs~aLT~dG--~Vy~WG 463 (1071)
.+.++..+-.+.+.++=+.|+.+|.+.-...+.....+....+..|+...-..+..++.+..| ++..|-
T Consensus 449 ~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~ 519 (626)
T KOG2106|consen 449 QLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWK 519 (626)
T ss_pred ceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEc
Confidence 345666666666667777889999988776665555554444566777766666666666555 678883
No 178
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=61.64 E-value=4.8e+02 Score=34.08 Aligned_cols=231 Identities=15% Similarity=0.151 Sum_probs=109.2
Q ss_pred eeeeccCCcccccCCCCcccccCCceeccCCCceEEEEecCCceEEEEecCCcE--EEEecCCCCCCCCCCCccCCCCcc
Q 001476 156 EVFSWGSGANYQLGTGNAHLQKLPCKVDSLHGFVIKLISAAKFHSVAVTSLGEV--YTWGYGRGGRLGHPDFDIHSGQAA 233 (1071)
Q Consensus 156 ~VYsWGsN~~GQLG~G~~~~~~~P~~V~~l~~~~I~~Va~G~~HslaLT~dG~V--y~WG~N~~GQLG~g~~~~~s~~~~ 233 (1071)
-||++|+|..-..=..... ...|..|.. .+..|..|++-..|.+.-++++.| |-+++...+ .
T Consensus 27 fi~tcgsdg~ir~~~~~sd-~e~P~ti~~-~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~--------------~ 90 (933)
T KOG1274|consen 27 FICTCGSDGDIRKWKTNSD-EEEPETIDI-SGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEED--------------T 90 (933)
T ss_pred EEEEecCCCceEEeecCCc-ccCCchhhc-cCceeEEEeecccceEEeeccceEEEeeCCCCCcc--------------c
Confidence 4778887654332222222 245666654 567899999999999998999865 555543321 1
Q ss_pred eeeeeeeecCCCCCCEEEEEecCceEEEEEcCCcEEEEeCCCCCCcCCCCCCCCCcceeeccCcccEEEEEE--cCCcee
Q 001476 234 VITPRRVTSGLGSRRVKTIAAAKHHTVLATEGGEVFTWGSNREGQLGYTSVDTQPTPRRVSSLKLKIIAVAA--ANKHTA 311 (1071)
Q Consensus 234 ~~~P~~V~~~l~~~~Iv~IAcG~~HslaLT~dG~VyswG~N~~GQLG~g~~~~~~~P~~V~~l~~~Iv~Vac--G~~HSl 311 (1071)
+..+..++ .++ +++.-+|+..+.|..+++---.. ......-+.+.+....|.+|.- -..+-+
T Consensus 91 iL~Rftlp-----~r~----------~~v~g~g~~iaagsdD~~vK~~~-~~D~s~~~~lrgh~apVl~l~~~p~~~fLA 154 (933)
T KOG1274|consen 91 ILARFTLP-----IRD----------LAVSGSGKMIAAGSDDTAVKLLN-LDDSSQEKVLRGHDAPVLQLSYDPKGNFLA 154 (933)
T ss_pred eeeeeecc-----ceE----------EEEecCCcEEEeecCceeEEEEe-ccccchheeecccCCceeeeeEcCCCCEEE
Confidence 11211111 122 23344555555555544321111 1111111222233345555543 344556
Q ss_pred EEecCCcEEEEeCCCCCCcCCCCCCCCCcccceeeeccCCCCEEEEEec--CCeEEEEeeCCcEEEEecCCCCCCCccce
Q 001476 312 VVSESGEVFTWGCNREGQLGYGTSNSASNYTPRVVESLKGKDLVGVAAA--KYHTIVLGADGERVIVARNLKKSGSTPLK 389 (1071)
Q Consensus 312 aLt~dG~VY~WG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~I~~IaaG--~~hTlaLt~dG~Vy~wG~n~~~~~~~P~~ 389 (1071)
+.+-||.|++|-.- .|.|-..-. .++.........-+..++-. ..+-++...++.|..+-++.......-..
T Consensus 155 vss~dG~v~iw~~~-~~~~~~tl~-----~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~ 228 (933)
T KOG1274|consen 155 VSSCDGKVQIWDLQ-DGILSKTLT-----GVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRD 228 (933)
T ss_pred EEecCceEEEEEcc-cchhhhhcc-----cCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecc
Confidence 67789999999643 222211100 00100110001112222221 13444455566666555442211111000
Q ss_pred eccccCCcEEEEEeCCCcceEEecCCcEEEEeCCC
Q 001476 390 FHRKIKLHVVSIAAGMVHSTALTEDGALFYWASSD 424 (1071)
Q Consensus 390 ~~~~~~~~I~~Ia~G~~hslaLt~dG~Vy~WG~n~ 424 (1071)
-.......+.+.+--+...++-+-+|+|.+|-...
T Consensus 229 ~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 229 KLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred cccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 00001134555555567788888999999998763
No 179
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=61.13 E-value=4.2e+02 Score=33.20 Aligned_cols=109 Identities=13% Similarity=0.059 Sum_probs=56.2
Q ss_pred ecCCeEEEEeeCCcEEEEecCCCCCCC----ccceeccccCCcEEEEEeCCCcceEEec--CCcEEEEeCCCCCCceeee
Q 001476 359 AAKYHTIVLGADGERVIVARNLKKSGS----TPLKFHRKIKLHVVSIAAGMVHSTALTE--DGALFYWASSDPDLRCQQL 432 (1071)
Q Consensus 359 aG~~hTlaLt~dG~Vy~wG~n~~~~~~----~P~~~~~~~~~~I~~Ia~G~~hslaLt~--dG~Vy~WG~n~~~~~p~~v 432 (1071)
.-.++.++-|+.|.||..-+....... .+...+......|..|..-..|--.++. |..|-.|-... ...|...
T Consensus 358 ~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~-~~~Pl~~ 436 (555)
T KOG1587|consen 358 TDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDV-IASPLLS 436 (555)
T ss_pred CCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccC-CCCcchh
Confidence 344778888999999986655333322 2222233333466666666655444433 33455554331 1111111
Q ss_pred eecCCceeEEEEeCCcE---EEEEeeCCcEEEecCCCCC
Q 001476 433 YSMCGRNVVSISAGKYW---TAAVTATGDVYMWDGKKSK 468 (1071)
Q Consensus 433 ~~l~g~~Vv~IaaG~~h---s~aLT~dG~Vy~WG~N~~~ 468 (1071)
.......|..++=...| .++.+.+|.+++|..+.+.
T Consensus 437 ~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~ 475 (555)
T KOG1587|consen 437 LDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDD 475 (555)
T ss_pred hhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccc
Confidence 11111225555444443 3335569999999977643
No 180
>PF12065 DUF3545: Protein of unknown function (DUF3545); InterPro: IPR021932 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 60 to 77 amino acids in length. This protein has two completely conserved residues (R and L) that may be functionally important.
Probab=61.02 E-value=7.7 Score=33.40 Aligned_cols=31 Identities=16% Similarity=0.410 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHhhhHHHHHHHHHHcCCCcc
Q 001476 702 RALRKKLQQIEMLEVKLSNGHILDEQQIAKLQTKSVLERSLAELGVPIE 750 (1071)
Q Consensus 702 r~l~kkl~~ie~l~~k~~~g~~l~~~q~~k~~~~~~~~~~l~~l~~~~~ 750 (1071)
++-+.|-|+||+||.|+ .|++||.+|++-.|
T Consensus 21 k~~KRKWREIEAikDr~------------------rL~kEL~d~D~~~d 51 (59)
T PF12065_consen 21 KPKKRKWREIEAIKDRQ------------------RLRKELQDMDMCFD 51 (59)
T ss_pred CccchhHHHHHHHHHHH------------------HHHHHHHHcccccc
Confidence 35678999999998875 58999999988776
No 181
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=57.93 E-value=2.3e+02 Score=37.15 Aligned_cols=150 Identities=10% Similarity=0.038 Sum_probs=77.2
Q ss_pred cCCceeEEecCCcEEEEeCCCCCCcCCCCCCCCCcccceeeeccCCCCEEEEEec-----CCeEEEEeeCCcEEEEecCC
Q 001476 306 ANKHTAVVSESGEVFTWGCNREGQLGYGTSNSASNYTPRVVESLKGKDLVGVAAA-----KYHTIVLGADGERVIVARNL 380 (1071)
Q Consensus 306 G~~HSlaLt~dG~VY~WG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~I~~IaaG-----~~hTlaLt~dG~Vy~wG~n~ 380 (1071)
...+.+++|+.|++|..-...--..+... .-......+....+.+|+.+.+- ..+.+++|.+|.+...-.+.
T Consensus 545 t~d~LllfTs~Grv~~l~~~~IP~~~r~~---~G~~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi~l~~ 621 (800)
T TIGR01063 545 THDYLLFFTNRGKVYWLKVYQIPEASRTA---KGKPIVNLLPLQPDERITAILSVKEFDDGLYLFFATKNGVVKKTSLTE 621 (800)
T ss_pred CCCeEEEEeCCCcEEEEEhhhCcCCCcCC---CCcCHHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEEEEhHH
Confidence 44456778999999998432221211111 00111112333356677776652 23577888899877654321
Q ss_pred CC----CCCccceeccccCCcEEEEEeC--CCcceEEecCCcEEEEeCCC--------CCCceeeeeecCCceeEEEEe-
Q 001476 381 KK----SGSTPLKFHRKIKLHVVSIAAG--MVHSTALTEDGALFYWASSD--------PDLRCQQLYSMCGRNVVSISA- 445 (1071)
Q Consensus 381 ~~----~~~~P~~~~~~~~~~I~~Ia~G--~~hslaLt~dG~Vy~WG~n~--------~~~~p~~v~~l~g~~Vv~Iaa- 445 (1071)
.. .+.....+. .+..++.+... ..+.+++|++|++|.+-..+ .+... +..-.+..|+.+.+
T Consensus 622 ~~~~~r~G~~aiklk--e~D~lv~v~~~~~~d~lll~Ts~Gr~~r~~v~eIp~~gr~~~Gv~~--i~L~~~E~Vv~~~~v 697 (800)
T TIGR01063 622 FSNIRSNGIIAIKLD--DGDELISVRLTSGDDEVMLGSKNGKAVRFPEEDVRPMGRAARGVRG--IKLKNEDFVVSLLVV 697 (800)
T ss_pred hhhhccCCcccccCC--CCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCCcCCCCCCeec--ccCCCCCEEEEEEEe
Confidence 11 111111221 23345444333 34688999999999875432 11111 11123456666554
Q ss_pred -CCcEEEEEeeCCcEEEe
Q 001476 446 -GKYWTAAVTATGDVYMW 462 (1071)
Q Consensus 446 -G~~hs~aLT~dG~Vy~W 462 (1071)
...+.+++|+.|.+.-.
T Consensus 698 ~~~~~ll~vT~~G~~Kr~ 715 (800)
T TIGR01063 698 SEESYLLIVTENGYGKRT 715 (800)
T ss_pred ccccEEEEEecCCcEEEE
Confidence 23457778888866655
No 182
>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC. The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].
Probab=57.60 E-value=16 Score=39.76 Aligned_cols=92 Identities=15% Similarity=0.201 Sum_probs=63.7
Q ss_pred chHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccC----CCCCcHHHHHHh--cCCHHHHHHHHhcC-CCCCCC--CCCCC
Q 001476 28 QKDLCLAVREGSLADVESALALLKKNGGNINSRN----IFGLTPLHSAIW--RNQVPIVRRLLAAG-ADPDAR--DGESG 98 (1071)
Q Consensus 28 ~TpLh~Aa~~G~~~~v~~iL~lLl~~Gadin~~d----~~G~TpLH~Aa~--~g~~eivk~LL~~G-Ad~~~~--d~~~G 98 (1071)
.++|.+|...+..+++. +|+.+ .+....| ..+.--+-|+.. ..+..+++++|.+| +++|.+ .-++|
T Consensus 180 ~~Am~~si~~~K~dva~----~lls~-f~ft~~dv~~~~~~~ydieY~LS~h~a~~kvL~~Fi~~Glv~vN~~F~~~NSG 254 (284)
T PF06128_consen 180 HQAMWLSIGNAKEDVAL----YLLSK-FNFTKQDVASMEKELYDIEYLLSEHSASYKVLEYFINRGLVDVNKKFQKVNSG 254 (284)
T ss_pred HHHHHHHhcccHHHHHH----HHHhh-cceecchhhhcCcchhhHHHHHhhcCCcHHHHHHHHhccccccchhhhccCCc
Confidence 56788888777666666 44432 3333333 223334555543 34677899999998 677753 22579
Q ss_pred ccccccccccccccchhhhhcccccc
Q 001476 99 WSSLHRALHFGHLAVASVLLQSGASI 124 (1071)
Q Consensus 99 ~TpL~~A~~~G~~~iv~lLl~~Ga~v 124 (1071)
.|-|+-|.++++.+++.+|+++||..
T Consensus 255 dtMLDNA~Ky~~~emi~~Llk~GA~~ 280 (284)
T PF06128_consen 255 DTMLDNAMKYKNSEMIAFLLKYGAIS 280 (284)
T ss_pred chHHHhHHhcCcHHHHHHHHHcCccc
Confidence 99999999999999999999999854
No 183
>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC. The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].
Probab=56.95 E-value=15 Score=39.90 Aligned_cols=49 Identities=24% Similarity=0.230 Sum_probs=39.6
Q ss_pred CCHHHHHHHHHHHHhCC-CCCccc---CCCCCcHHHHHHhcCCHHHHHHHHhcCCCC
Q 001476 38 GSLADVESALALLKKNG-GNINSR---NIFGLTPLHSAIWRNQVPIVRRLLAAGADP 90 (1071)
Q Consensus 38 G~~~~v~~iL~lLl~~G-adin~~---d~~G~TpLH~Aa~~g~~eivk~LL~~GAd~ 90 (1071)
.+..+++ .++.+| +++|.+ -..|.|-|--|..+++.+++.+||++||-.
T Consensus 228 a~~kvL~----~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~~ 280 (284)
T PF06128_consen 228 ASYKVLE----YFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGAIS 280 (284)
T ss_pred CcHHHHH----HHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCccc
Confidence 3444555 788887 788854 467999999999999999999999999843
No 184
>PLN02153 epithiospecifier protein
Probab=55.95 E-value=3.7e+02 Score=30.92 Aligned_cols=58 Identities=12% Similarity=0.219 Sum_probs=31.4
Q ss_pred CcceEEecCCcEEEEeCCCC----------CCceeeeeecCCceeEEEEe-C------CcEEEEEeeCCcEEEecCC
Q 001476 406 VHSTALTEDGALFYWASSDP----------DLRCQQLYSMCGRNVVSISA-G------KYWTAAVTATGDVYMWDGK 465 (1071)
Q Consensus 406 ~hslaLt~dG~Vy~WG~n~~----------~~~p~~v~~l~g~~Vv~Iaa-G------~~hs~aLT~dG~Vy~WG~N 465 (1071)
.|++++ -+|++|++|.... ......+..+.......+.. | ..|++++ -+++||++|+.
T Consensus 186 ~~~~~~-~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~-~~~~iyv~GG~ 260 (341)
T PLN02153 186 GAGFAV-VQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHAV-VGKYIIIFGGE 260 (341)
T ss_pred cceEEE-ECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeeeEE-ECCEEEEECcc
Confidence 344444 5789999864321 01122333444445555542 1 2355544 46899999985
No 185
>PRK05560 DNA gyrase subunit A; Validated
Probab=55.31 E-value=2.3e+02 Score=37.07 Aligned_cols=153 Identities=11% Similarity=0.065 Sum_probs=79.6
Q ss_pred EcCCceeEEecCCcEEEEeCCCCCCcCCCCCCCCCcccceeeeccCCCCEEEEEecC-----CeEEEEeeCCcEEEEecC
Q 001476 305 AANKHTAVVSESGEVFTWGCNREGQLGYGTSNSASNYTPRVVESLKGKDLVGVAAAK-----YHTIVLGADGERVIVARN 379 (1071)
Q Consensus 305 cG~~HSlaLt~dG~VY~WG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~I~~IaaG~-----~hTlaLt~dG~Vy~wG~n 379 (1071)
....+-+++|+.|++|..-...--..+..... ...-..+....+.+|+.+.+.. ...+++|.+|.+...-..
T Consensus 546 ~t~d~LllfTs~Grv~~l~v~~iP~~~~~~~G---~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~ 622 (805)
T PRK05560 546 STHDTLLFFTNRGRVYRLKVYEIPEASRTARG---RPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSLS 622 (805)
T ss_pred cCCCeEEEEecCCeEEEEEhhhCcCCCcCCCC---eEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEhH
Confidence 34445677899999999865522222111100 1111123333566787777654 457888899987665322
Q ss_pred CCC----CCCccceeccccCCcEEEEEeC--CCcceEEecCCcEEEEeCCCC-C----Cceeeeee-cCCceeEEEEeCC
Q 001476 380 LKK----SGSTPLKFHRKIKLHVVSIAAG--MVHSTALTEDGALFYWASSDP-D----LRCQQLYS-MCGRNVVSISAGK 447 (1071)
Q Consensus 380 ~~~----~~~~P~~~~~~~~~~I~~Ia~G--~~hslaLt~dG~Vy~WG~n~~-~----~~p~~v~~-l~g~~Vv~IaaG~ 447 (1071)
... .+.....+. .+..++.+... ..+.+++|++|++|.+-..+- . ........ -.+..|+.+.+..
T Consensus 623 ~~~~~~r~G~~~ikLk--e~D~lv~v~~~~~~d~lll~T~~Gr~~r~~~~eIp~~gr~~~Gv~~i~L~~~E~Vv~~~~v~ 700 (805)
T PRK05560 623 EFSNIRSNGIIAINLD--EGDELIGVRLTDGDDDILLATKNGKAIRFPESDVRPMGRTARGVRGIKLREGDEVVSMDVVR 700 (805)
T ss_pred HhhhcccCCceeeccC--CCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCccCcccCCcccccCCCCCEEEEEEEEc
Confidence 111 111112222 23345544433 345889999999998754320 0 00111111 2345666665532
Q ss_pred ---cEEEEEeeCCcEEEe
Q 001476 448 ---YWTAAVTATGDVYMW 462 (1071)
Q Consensus 448 ---~hs~aLT~dG~Vy~W 462 (1071)
.+.+++|+.|.+.-.
T Consensus 701 ~~~~~il~vTk~G~iKr~ 718 (805)
T PRK05560 701 EDSQEILTVTENGYGKRT 718 (805)
T ss_pred CCCcEEEEEEeCCeEEEE
Confidence 257778888866554
No 186
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=52.13 E-value=7.3e+02 Score=33.20 Aligned_cols=87 Identities=14% Similarity=0.098 Sum_probs=52.9
Q ss_pred EEEEeeCCcEEEEecCCCCCCCccceeccccCCcEEEEEeCC----CcceEEecCCcEEEEeCCCCCCceeeeeecCCce
Q 001476 364 TIVLGADGERVIVARNLKKSGSTPLKFHRKIKLHVVSIAAGM----VHSTALTEDGALFYWASSDPDLRCQQLYSMCGRN 439 (1071)
Q Consensus 364 TlaLt~dG~Vy~wG~n~~~~~~~P~~~~~~~~~~I~~Ia~G~----~hslaLt~dG~Vy~WG~n~~~~~p~~v~~l~g~~ 439 (1071)
.++-+.+|.+|..-.+...... .+++..-. .+.-+..+. .+.+.|+.+|++|+=+ ..+ ..+
T Consensus 549 ~~~q~~~G~v~~~~~~~~~~~~--~~fp~~c~-~~~~~~~~~~~~~~~~~GLs~~~~Ly~n~--------~~l----a~~ 613 (928)
T PF04762_consen 549 LYIQTNDGKVFQLSSDGELSQI--VKFPQPCP-WMEVCQINGSEDKRVLFGLSSNGRLYANS--------RLL----ASN 613 (928)
T ss_pred EEEEECCCEEEEeecCCCcccc--ccCCCCCc-EEEEEEECCccceeEEEEECCCCEEEECC--------EEE----ecC
Confidence 5667889999965433211111 22222111 222333333 3688899999999622 112 256
Q ss_pred eEEEEeCCcEEEEEeeCCcEEEecCC
Q 001476 440 VVSISAGKYWTAAVTATGDVYMWDGK 465 (1071)
Q Consensus 440 Vv~IaaG~~hs~aLT~dG~Vy~WG~N 465 (1071)
++++.....|-++.|....+.+.--+
T Consensus 614 ~tSF~v~~~~Ll~TT~~h~l~fv~L~ 639 (928)
T PF04762_consen 614 CTSFAVTDSFLLFTTTQHTLKFVHLN 639 (928)
T ss_pred CceEEEEcCEEEEEecCceEEEEECc
Confidence 88888888998888888888887665
No 187
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=52.01 E-value=2.1e+02 Score=38.65 Aligned_cols=203 Identities=18% Similarity=0.202 Sum_probs=96.5
Q ss_pred EEEecCCcEEEEecCCCCCCCCCCCccCCCCcceeeeeeeecCCCCCCEEEEEecCceEEEEEcCCcEEEEeCCC-CCCc
Q 001476 201 VAVTSLGEVYTWGYGRGGRLGHPDFDIHSGQAAVITPRRVTSGLGSRRVKTIAAAKHHTVLATEGGEVFTWGSNR-EGQL 279 (1071)
Q Consensus 201 laLT~dG~Vy~WG~N~~GQLG~g~~~~~s~~~~~~~P~~V~~~l~~~~Iv~IAcG~~HslaLT~dG~VyswG~N~-~GQL 279 (1071)
+-+|.|++||.|-.++.+++-.-+. ..+.. ..-..|. +-.+.-+-.| .|.++|..--+|+..|-.. .++.
T Consensus 93 aWiTiDn~L~lWny~~~~e~~~~d~---~shtI-l~V~Lvk-PkpgvFv~~I----qhlLvvaT~~ei~ilgV~~~~~~~ 163 (1311)
T KOG1900|consen 93 AWITIDNNLFLWNYESDNELAEYDG---LSHTI-LKVGLVK-PKPGVFVPEI----QHLLVVATPVEIVILGVSFDEFTG 163 (1311)
T ss_pred eEEEeCCeEEEEEcCCCCccccccc---hhhhh-eeeeeec-CCCCcchhhh----heeEEecccceEEEEEEEeccccC
Confidence 4578899999999998777643321 01111 1111111 1122222222 4889998888898888443 2222
Q ss_pred CCCCCCCCCcceeeccCcccEEEEEEcCCceeEEecCCcEEEEeCCC-------------CCC-cCCC--CCCCCCcccc
Q 001476 280 GYTSVDTQPTPRRVSSLKLKIIAVAAANKHTAVVSESGEVFTWGCNR-------------EGQ-LGYG--TSNSASNYTP 343 (1071)
Q Consensus 280 G~g~~~~~~~P~~V~~l~~~Iv~VacG~~HSlaLt~dG~VY~WG~N~-------------~GQ-LG~g--~~~~~~~~~P 343 (1071)
+.+..... -.|..-+..|..|++ +++|+||.-|.+. +++ +-.- +........|
T Consensus 164 ~~~~f~~~---~~i~~dg~~V~~I~~--------t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvP 232 (1311)
T KOG1900|consen 164 ELSIFNTS---FKISVDGVSVNCITY--------TENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVP 232 (1311)
T ss_pred cccccccc---eeeecCCceEEEEEe--------ccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhh
Confidence 22211111 111111122333332 6667666666542 122 0000 0000112445
Q ss_pred eeeecc--CCCCEEEEEecCCeEEE--EeeCCcE--EEEecCCCC-CCC------------cc--ceeccccCCcEEEEE
Q 001476 344 RVVESL--KGKDLVGVAAAKYHTIV--LGADGER--VIVARNLKK-SGS------------TP--LKFHRKIKLHVVSIA 402 (1071)
Q Consensus 344 ~~V~~l--~~~~I~~IaaG~~hTla--Lt~dG~V--y~wG~n~~~-~~~------------~P--~~~~~~~~~~I~~Ia 402 (1071)
.....+ ....|.+|+.+....+. +++.|.+ |..|.|.-. ... .. ..+....-..|++|.
T Consensus 233 s~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~G~~~~r~~~~~~~~i~~qa~~~~~~~~~s~f~~IvsI~ 312 (1311)
T KOG1900|consen 233 SLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGNGLGGPRFVSVSRNYIDVQALSLKNPLDDSVFFSIVSIS 312 (1311)
T ss_pred hhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccCCCccceeeeehhHHHHHHHhhhccccCCCcccceeEEec
Confidence 533322 25589999998876654 4556664 444543110 000 00 001111112455554
Q ss_pred ------eCCCcceEEecCC-cEEEEeCC
Q 001476 403 ------AGMVHSTALTEDG-ALFYWASS 423 (1071)
Q Consensus 403 ------~G~~hslaLt~dG-~Vy~WG~n 423 (1071)
.-+-|.+|+|..| ++|.-|+.
T Consensus 313 ~l~~~es~~l~LvA~ts~GvRlYfs~s~ 340 (1311)
T KOG1900|consen 313 PLSASESNDLHLVAITSTGVRLYFSTSS 340 (1311)
T ss_pred ccCcccccceeEEEEecCCeEEEEeccC
Confidence 3457889999998 67766653
No 188
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=50.48 E-value=4.8e+02 Score=30.62 Aligned_cols=57 Identities=14% Similarity=0.059 Sum_probs=28.6
Q ss_pred CCcceEEecCCcEEEEeCCCCCCceeeeeecCCce-eEEEEeCCcEEEEEeeCCcEEEec
Q 001476 405 MVHSTALTEDGALFYWASSDPDLRCQQLYSMCGRN-VVSISAGKYWTAAVTATGDVYMWD 463 (1071)
Q Consensus 405 ~~hslaLt~dG~Vy~WG~n~~~~~p~~v~~l~g~~-Vv~IaaG~~hs~aLT~dG~Vy~WG 463 (1071)
....++.+.+|.||+.-..+....-.. .+.+.. ...-.....+.++.+.+|.||++.
T Consensus 335 ~g~l~v~~~~G~l~~ld~~tG~~~~~~--~~~~~~~~s~P~~~~~~l~v~t~~G~l~~~~ 392 (394)
T PRK11138 335 NGYLVVGDSEGYLHWINREDGRFVAQQ--KVDSSGFLSEPVVADDKLLIQARDGTVYAIT 392 (394)
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEE--EcCCCcceeCCEEECCEEEEEeCCceEEEEe
Confidence 344556667777777654432211110 011111 111112235788888999999874
No 189
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=49.97 E-value=44 Score=36.46 Aligned_cols=71 Identities=24% Similarity=0.240 Sum_probs=44.4
Q ss_pred CCceeEEEEeCCcEEEEEeeCCcEEEecCCCCCCCCCc----eEEe-------cCcccEEEEEecCCeEEEEEeCCCCcc
Q 001476 436 CGRNVVSISAGKYWTAAVTATGDVYMWDGKKSKDNPPL----VTRL-------HGIKKATSVSVGETHLLIVGSLYHPIY 504 (1071)
Q Consensus 436 ~g~~Vv~IaaG~~hs~aLT~dG~Vy~WG~N~~~~~~~~----p~~v-------~g~~~V~~Va~G~~HtlaL~s~~~~v~ 504 (1071)
.+.+++.+.|...+.+++|.+|.+|+|.-...+...+. |..- .....|+.+........+|+-..+..|
T Consensus 11 Lgs~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y 90 (219)
T PF07569_consen 11 LGSPVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSY 90 (219)
T ss_pred cCCceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEE
Confidence 34678889999999999999999999986664321111 1110 223467776666555555543335555
Q ss_pred CC
Q 001476 505 PP 506 (1071)
Q Consensus 505 ~w 506 (1071)
.|
T Consensus 91 ~y 92 (219)
T PF07569_consen 91 SY 92 (219)
T ss_pred Ee
Confidence 44
No 190
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=48.99 E-value=3.4e+02 Score=31.78 Aligned_cols=18 Identities=22% Similarity=0.130 Sum_probs=12.9
Q ss_pred CeEEEEeeCCcEEEEecC
Q 001476 362 YHTIVLGADGERVIVARN 379 (1071)
Q Consensus 362 ~hTlaLt~dG~Vy~wG~n 379 (1071)
.|+.+...++.||++|..
T Consensus 131 ~~~~~~~~~~~IYv~GG~ 148 (376)
T PRK14131 131 GHVAVSLHNGKAYITGGV 148 (376)
T ss_pred ceEEEEeeCCEEEEECCC
Confidence 355555478999999864
No 191
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=46.54 E-value=21 Score=31.23 Aligned_cols=44 Identities=25% Similarity=0.289 Sum_probs=36.1
Q ss_pred cchhHHHHHHHHHHhhc-CCCcccHHHHHHHHHhcCchhHHHHHH
Q 001476 551 RLAPSLKSLCENVAAQC-LVEPRNALQLLEISDSLGADDLKKHCE 594 (1071)
Q Consensus 551 y~~~~LK~lCE~~l~~~-~v~~~nv~~il~lA~~~~~~~Lk~~C~ 594 (1071)
.....++.+++..+... .++..++..++.+|+.++.+.|.+.|.
T Consensus 46 ~~~~~f~~~l~~ly~~~~~~~~~~~~~l~~~a~~~~~~~l~~~c~ 90 (90)
T smart00225 46 VSPEDFRALLEFLYTGKLDLPEENVEELLELADYLQIPGLVELCE 90 (90)
T ss_pred CCHHHHHHHHHeecCceeecCHHHHHHHHHHHHHHCcHHHHhhhC
Confidence 55677788888877776 356678999999999999999999993
No 192
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=45.35 E-value=1.4e+02 Score=33.77 Aligned_cols=139 Identities=22% Similarity=0.253 Sum_probs=75.7
Q ss_pred CCceEEEEecCCcEEEEecCCCCCCCCCCCccCCCCcceeeeeeeecCCCCCCEEEEEe--c-CceEEEEEcCCcEEEEe
Q 001476 196 AKFHSVAVTSLGEVYTWGYGRGGRLGHPDFDIHSGQAAVITPRRVTSGLGSRRVKTIAA--A-KHHTVLATEGGEVFTWG 272 (1071)
Q Consensus 196 G~~HslaLT~dG~Vy~WG~N~~GQLG~g~~~~~s~~~~~~~P~~V~~~l~~~~Iv~IAc--G-~~HslaLT~dG~VyswG 272 (1071)
+.-|.++...||.||.-+... |.+|+-+- .+ ..++.+.. | .-|.+++..||..|.+-
T Consensus 62 ~ap~dvapapdG~VWft~qg~-gaiGhLdP--~t-----------------Gev~~ypLg~Ga~Phgiv~gpdg~~Witd 121 (353)
T COG4257 62 SAPFDVAPAPDGAVWFTAQGT-GAIGHLDP--AT-----------------GEVETYPLGSGASPHGIVVGPDGSAWITD 121 (353)
T ss_pred CCccccccCCCCceEEecCcc-ccceecCC--CC-----------------CceEEEecCCCCCCceEEECCCCCeeEec
Confidence 466888999999999866433 44454321 11 12223322 2 23888888899988874
Q ss_pred CC-CCCCcCCCCCCCCCcceeeccCcccEEEEEEcCCceeEEecCCcEEEEeCC-CCCCcCCCCCCCCCcccceeeeccC
Q 001476 273 SN-REGQLGYTSVDTQPTPRRVSSLKLKIIAVAAANKHTAVVSESGEVFTWGCN-REGQLGYGTSNSASNYTPRVVESLK 350 (1071)
Q Consensus 273 ~N-~~GQLG~g~~~~~~~P~~V~~l~~~Iv~VacG~~HSlaLt~dG~VY~WG~N-~~GQLG~g~~~~~~~~~P~~V~~l~ 350 (1071)
.. ..+.++..+... ++ +... .+-+-++-.+.+++..|.||..|.+ -+|.|--.... |..+.
T Consensus 122 ~~~aI~R~dpkt~ev----t~---f~lp-~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~---------i~vfp 184 (353)
T COG4257 122 TGLAIGRLDPKTLEV----TR---FPLP-LEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNV---------ISVFP 184 (353)
T ss_pred CcceeEEecCcccce----EE---eecc-cccCCCcccceeeCCCccEEEeeccccceecCcccCc---------eeeec
Confidence 33 222222111111 11 1101 2234456688999999999999875 24443221111 11110
Q ss_pred CCCEEEEEecCCeEEEEeeCCcEEEE
Q 001476 351 GKDLVGVAAAKYHTIVLGADGERVIV 376 (1071)
Q Consensus 351 ~~~I~~IaaG~~hTlaLt~dG~Vy~w 376 (1071)
. =.-+.-+-++.|-||+||.-
T Consensus 185 a-----PqG~gpyGi~atpdGsvwya 205 (353)
T COG4257 185 A-----PQGGGPYGICATPDGSVWYA 205 (353)
T ss_pred c-----CCCCCCcceEECCCCcEEEE
Confidence 0 01244567889999999986
No 193
>PLN02193 nitrile-specifier protein
Probab=45.34 E-value=6.4e+02 Score=30.63 Aligned_cols=16 Identities=25% Similarity=0.488 Sum_probs=11.8
Q ss_pred ceEEEEecCCcEEEEec
Q 001476 198 FHSVAVTSLGEVYTWGY 214 (1071)
Q Consensus 198 ~HslaLT~dG~Vy~WG~ 214 (1071)
.|++++. ++.||++|-
T Consensus 168 ~h~~~~~-~~~iyv~GG 183 (470)
T PLN02193 168 SHGIAQV-GNKIYSFGG 183 (470)
T ss_pred ccEEEEE-CCEEEEECC
Confidence 4776654 578999984
No 194
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=42.96 E-value=2.8e+02 Score=33.05 Aligned_cols=108 Identities=18% Similarity=0.233 Sum_probs=55.1
Q ss_pred CCEEEEEecCCeEEEE--eeCCcEEEEecCCCCCCCcccee--ccccCCcEEEEEeCCCcceEEe--cCCcEEEEeCCCC
Q 001476 352 KDLVGVAAAKYHTIVL--GADGERVIVARNLKKSGSTPLKF--HRKIKLHVVSIAAGMVHSTALT--EDGALFYWASSDP 425 (1071)
Q Consensus 352 ~~I~~IaaG~~hTlaL--t~dG~Vy~wG~n~~~~~~~P~~~--~~~~~~~I~~Ia~G~~hslaLt--~dG~Vy~WG~n~~ 425 (1071)
..|+.++-..+.-++| ..+.++..|--.... .+.++ +.....-|..-..|.+..++.. +|++||+|-....
T Consensus 396 ~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~---lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sg 472 (519)
T KOG0293|consen 396 QPITSFSISKDGKLALVNLQDQEIHLWDLEENK---LVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISG 472 (519)
T ss_pred CceeEEEEcCCCcEEEEEcccCeeEEeecchhh---HHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCC
Confidence 3566665555444444 346677777543110 01111 1111224556666666566664 8999999986543
Q ss_pred CCceeeeeecCC--ceeEEEEeCC--cEEEE-EeeCCcEEEecCCC
Q 001476 426 DLRCQQLYSMCG--RNVVSISAGK--YWTAA-VTATGDVYMWDGKK 466 (1071)
Q Consensus 426 ~~~p~~v~~l~g--~~Vv~IaaG~--~hs~a-LT~dG~Vy~WG~N~ 466 (1071)
. .+..+.| ..|-.|+-.. -+.+| -.+||++-+||-..
T Consensus 473 k----ll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 473 K----LLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred c----eeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 2 2222332 2233333221 22222 45789999999543
No 195
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=41.40 E-value=4.6e+02 Score=33.47 Aligned_cols=27 Identities=19% Similarity=0.319 Sum_probs=23.0
Q ss_pred ccEEEEEEcCC----ceeEEecCCcEEEEeC
Q 001476 298 LKIIAVAAANK----HTAVVSESGEVFTWGC 324 (1071)
Q Consensus 298 ~~Iv~VacG~~----HSlaLt~dG~VY~WG~ 324 (1071)
..+..|+||.. .+++||..|.+.-|-.
T Consensus 218 n~f~avaCg~gicAestfait~qGhLvEFSs 248 (1080)
T KOG1408|consen 218 NEFLAVACGVGICAESTFAITAQGHLVEFSS 248 (1080)
T ss_pred chhhhhhhcCcccccceEEEecccceeeech
Confidence 36889999988 9999999999887753
No 196
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=40.36 E-value=7.2e+02 Score=29.77 Aligned_cols=184 Identities=10% Similarity=0.083 Sum_probs=0.0
Q ss_pred EEEcCCceeEEecC-CcEEEEeCCCCCCcCCCCCCCCCcccceeeeccCCCCEEEEEecCCeEEEEeeCCcEEEEecCCC
Q 001476 303 VAAANKHTAVVSES-GEVFTWGCNREGQLGYGTSNSASNYTPRVVESLKGKDLVGVAAAKYHTIVLGADGERVIVARNLK 381 (1071)
Q Consensus 303 VacG~~HSlaLt~d-G~VY~WG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~I~~IaaG~~hTlaLt~dG~Vy~wG~n~~ 381 (1071)
++.|.+-.++.|+| |+=|.- ...|.....-.......|+.-..+.+++.+.|.+|.--..-.
T Consensus 104 wAVG~~G~IL~T~DGG~tW~~-----------------~~~~~~~~~~~~~~l~~v~f~~~~g~~vG~~G~il~T~DgG~ 166 (398)
T PLN00033 104 FLLGTRQTLLETKDGGKTWVP-----------------RSIPSAEDEDFNYRFNSISFKGKEGWIIGKPAILLHTSDGGE 166 (398)
T ss_pred EEEcCCCEEEEEcCCCCCceE-----------------CccCcccccccccceeeeEEECCEEEEEcCceEEEEEcCCCC
Q ss_pred CCCCccceeccccCCcEEEEEeCCCcceEEecCCcEEEEeCCCCCCceeeeeecCCceeEEEEe---------CCcEEEE
Q 001476 382 KSGSTPLKFHRKIKLHVVSIAAGMVHSTALTEDGALFYWASSDPDLRCQQLYSMCGRNVVSISA---------GKYWTAA 452 (1071)
Q Consensus 382 ~~~~~P~~~~~~~~~~I~~Ia~G~~hslaLt~dG~Vy~WG~n~~~~~p~~v~~l~g~~Vv~Iaa---------G~~hs~a 452 (1071)
.-...+........ ...-.+++....+++...|.||.--++...............--..+.+ |..+.++
T Consensus 167 tW~~~~~~~~~p~~-~~~i~~~~~~~~~ivg~~G~v~~S~D~G~tW~~~~~~t~~~~l~~~~~s~~~g~~~y~Gsf~~v~ 245 (398)
T PLN00033 167 TWERIPLSPKLPGE-PVLIKATGPKSAEMVTDEGAIYVTSNAGRNWKAAVEETVSATLNRTVSSGISGASYYTGTFSTVN 245 (398)
T ss_pred CceECccccCCCCC-ceEEEEECCCceEEEeccceEEEECCCCCCceEcccccccccccccccccccccceeccceeeEE
Q ss_pred EeeCCcEEEecCCC-------CCCCCCceEEecCcccEEEEEecCCeEEEEEeCCCCcc
Q 001476 453 VTATGDVYMWDGKK-------SKDNPPLVTRLHGIKKATSVSVGETHLLIVGSLYHPIY 504 (1071)
Q Consensus 453 LT~dG~Vy~WG~N~-------~~~~~~~p~~v~g~~~V~~Va~G~~HtlaL~s~~~~v~ 504 (1071)
...+|.++.+|..+ .++....+...+....+..+....+..++++...+.++
T Consensus 246 ~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~G~l~ 304 (398)
T PLN00033 246 RSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLTRGGGLY 304 (398)
T ss_pred EcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEeCCceEE
No 197
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=40.30 E-value=3.3e+02 Score=34.68 Aligned_cols=103 Identities=19% Similarity=0.275 Sum_probs=59.3
Q ss_pred EEecCceEEEEEcCCcEEEEeCCCCCCcCCCCCCCCCcceeeccCcccEEEEEEcCCceeEEecCCc-EEEEeCCCCCCc
Q 001476 252 IAAAKHHTVLATEGGEVFTWGSNREGQLGYTSVDTQPTPRRVSSLKLKIIAVAAANKHTAVVSESGE-VFTWGCNREGQL 330 (1071)
Q Consensus 252 IAcG~~HslaLT~dG~VyswG~N~~GQLG~g~~~~~~~P~~V~~l~~~Iv~VacG~~HSlaLt~dG~-VY~WG~N~~GQL 330 (1071)
|+.|..|-+++. ||.|-.|..+-- .+ +..+|..|+...+-++++|..++ |-.|= =|.
T Consensus 138 vSVGsQHDMIVn----v~dWr~N~~~as-----------nk---iss~Vsav~fsEdgSYfvT~gnrHvk~wy----l~~ 195 (1080)
T KOG1408|consen 138 VSVGSQHDMIVN----VNDWRVNSSGAS-----------NK---ISSVVSAVAFSEDGSYFVTSGNRHVKLWY----LQI 195 (1080)
T ss_pred EeeccccceEEE----hhhhhhcccccc-----------cc---cceeEEEEEEccCCceeeeeeeeeEEEEE----eec
Confidence 456889998885 888987765420 11 12356666666666666655432 33331 111
Q ss_pred CCCCCCCCCccccee---eeccCCCCEEEEEecCC----eEEEEeeCCcEEEEec
Q 001476 331 GYGTSNSASNYTPRV---VESLKGKDLVGVAAAKY----HTIVLGADGERVIVAR 378 (1071)
Q Consensus 331 G~g~~~~~~~~~P~~---V~~l~~~~I~~IaaG~~----hTlaLt~dG~Vy~wG~ 378 (1071)
+. ........|-+ +..+....+..|+||.. .++++|..|.+.-|..
T Consensus 196 ~~--KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSs 248 (1080)
T KOG1408|consen 196 QS--KYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSS 248 (1080)
T ss_pred cc--cccCCccccchhhhccccccchhhhhhhcCcccccceEEEecccceeeech
Confidence 11 11111222222 12334456888999987 9999999999887754
No 198
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=38.33 E-value=9.1e+02 Score=30.34 Aligned_cols=116 Identities=16% Similarity=0.089 Sum_probs=60.2
Q ss_pred EcCCceeEEecCCcEEEEeC-CCCCCcCCCCCCCCCcccceeeeccCCCCEEEEEecCCeEEEEeeCC--cEEEEecCCC
Q 001476 305 AANKHTAVVSESGEVFTWGC-NREGQLGYGTSNSASNYTPRVVESLKGKDLVGVAAAKYHTIVLGADG--ERVIVARNLK 381 (1071)
Q Consensus 305 cG~~HSlaLt~dG~VY~WG~-N~~GQLG~g~~~~~~~~~P~~V~~l~~~~I~~IaaG~~hTlaLt~dG--~Vy~wG~n~~ 381 (1071)
.=.+|.++-|+.|.||..=. +..-+.. ..+.+..........|..|....++.-.++.-| .|-.|-...
T Consensus 358 ~~p~~FiVGTe~G~v~~~~r~g~~~~~~-------~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~- 429 (555)
T KOG1587|consen 358 TDPNHFIVGTEEGKVYKGCRKGYTPAPE-------VSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDV- 429 (555)
T ss_pred CCCceEEEEcCCcEEEEEeccCCccccc-------ccccccccccccCcceEeeecCCCccceeeeeccceeEeccccC-
Confidence 33567888899999998422 1111110 112223233333446677777766655554444 344443321
Q ss_pred CCCCccceeccccCCcEEEEEeCCCcc---eEEecCCcEEEEeCCCCCCcee
Q 001476 382 KSGSTPLKFHRKIKLHVVSIAAGMVHS---TALTEDGALFYWASSDPDLRCQ 430 (1071)
Q Consensus 382 ~~~~~P~~~~~~~~~~I~~Ia~G~~hs---laLt~dG~Vy~WG~n~~~~~p~ 430 (1071)
...|..........|.+++=.-.|. ++.+.+|.++.|--......|.
T Consensus 430 --~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv 479 (555)
T KOG1587|consen 430 --IASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPV 479 (555)
T ss_pred --CCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCc
Confidence 2234332222223466666666662 3344689999998766554443
No 199
>PHA02414 hypothetical protein
Probab=38.29 E-value=41 Score=31.74 Aligned_cols=32 Identities=31% Similarity=0.536 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHh
Q 001476 698 SKQVRALRKKLQQIEMLEVKLSNGHILDEQQIAKL 732 (1071)
Q Consensus 698 ~k~~r~l~kkl~~ie~l~~k~~~g~~l~~~q~~k~ 732 (1071)
++.|.+| +-|||.||.|++.|+..++..-.-|
T Consensus 3 D~~in~L---v~~v~~ledKiQ~Gelt~kgdn~eL 34 (111)
T PHA02414 3 DKEINNL---VSQVETLEDKIQEGELTDKGDNKEL 34 (111)
T ss_pred chHHHHH---HHHHHHHHHHHhcCccccCCchHHH
Confidence 5667776 5678899999999999877643333
No 200
>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].
Probab=37.83 E-value=50 Score=29.66 Aligned_cols=47 Identities=21% Similarity=0.195 Sum_probs=36.6
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHhc
Q 001476 29 KDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAA 86 (1071)
Q Consensus 29 TpLh~Aa~~G~~~~v~~iL~lLl~~Gadin~~d~~G~TpLH~Aa~~g~~eivk~LL~~ 86 (1071)
..|..|...|+.++++ .+++.+ .++ ...|..|+...+.+++++|++.
T Consensus 8 ~tl~~Ai~GGN~eII~----~c~~~~-~~~------~~~l~~AI~~H~n~i~~~l~~~ 54 (76)
T PF11929_consen 8 KTLEYAIIGGNFEIIN----ICLKKN-KPD------NDCLEYAIKSHNNEIADWLIEN 54 (76)
T ss_pred HHHHHHHhCCCHHHHH----HHHHHh-ccH------HHHHHHHHHHhhHHHHHHHHHh
Confidence 4589999999999999 444443 222 3469999999999999999886
No 201
>PRK05560 DNA gyrase subunit A; Validated
Probab=37.14 E-value=1.1e+03 Score=31.00 Aligned_cols=211 Identities=10% Similarity=0.096 Sum_probs=102.3
Q ss_pred ecCCceEEEEecCCcEEEEecCCCCCCCCCCCccCCCCcceeeeeeeecCCCCCCEEEEEecC-----ceEEEEEcCCcE
Q 001476 194 SAAKFHSVAVTSLGEVYTWGYGRGGRLGHPDFDIHSGQAAVITPRRVTSGLGSRRVKTIAAAK-----HHTVLATEGGEV 268 (1071)
Q Consensus 194 a~G~~HslaLT~dG~Vy~WG~N~~GQLG~g~~~~~s~~~~~~~P~~V~~~l~~~~Iv~IAcG~-----~HslaLT~dG~V 268 (1071)
+....+.+++|+.|++|..-...--..+... .....-..+. ...+++|+.+.+-. ...+++|.+|.+
T Consensus 545 ~~t~d~LllfTs~Grv~~l~v~~iP~~~~~~-------~G~~i~~ll~-L~~~E~Iv~~i~~~~~~~e~~lvlvTk~Gyi 616 (805)
T PRK05560 545 ASTHDTLLFFTNRGRVYRLKVYEIPEASRTA-------RGRPIVNLLP-LEPGEKITAILPVREFDDDKYLFFATKNGTV 616 (805)
T ss_pred ecCCCeEEEEecCCeEEEEEhhhCcCCCcCC-------CCeEHHHhcC-CCCCceEEEEEeccCCCCCCEEEEEeCCCEE
Confidence 3356678899999999998654221111100 0000001111 22456777776644 357888999977
Q ss_pred EEEeCCCCCCcCCCCCCCCCcceeeccCcccEEEEEE--cCCceeEEecCCcEEEEeCCCCCCcCCCCCCCCCcccceee
Q 001476 269 FTWGSNREGQLGYTSVDTQPTPRRVSSLKLKIIAVAA--ANKHTAVVSESGEVFTWGCNREGQLGYGTSNSASNYTPRVV 346 (1071)
Q Consensus 269 yswG~N~~GQLG~g~~~~~~~P~~V~~l~~~Iv~Vac--G~~HSlaLt~dG~VY~WG~N~~GQLG~g~~~~~~~~~P~~V 346 (1071)
.-.-.+.+-....+.. .-..+.. ...++.+.. ...+.+++|++|++|.+-...--..|...... + .+
T Consensus 617 KRi~l~~~~~~~r~G~----~~ikLke-~D~lv~v~~~~~~d~lll~T~~Gr~~r~~~~eIp~~gr~~~Gv-----~-~i 685 (805)
T PRK05560 617 KKTSLSEFSNIRSNGI----IAINLDE-GDELIGVRLTDGDDDILLATKNGKAIRFPESDVRPMGRTARGV-----R-GI 685 (805)
T ss_pred EEEEhHHhhhcccCCc----eeeccCC-CCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCccCcccCCc-----c-cc
Confidence 6553332211000000 0000011 124444433 33467889999999998655433333221110 0 01
Q ss_pred eccCCCCEEEEEecC---CeEEEEeeCCcEEEEecC-CC--CCCCccceeccc-c-CCcEEEE--EeCCCcceEEecCCc
Q 001476 347 ESLKGKDLVGVAAAK---YHTIVLGADGERVIVARN-LK--KSGSTPLKFHRK-I-KLHVVSI--AAGMVHSTALTEDGA 416 (1071)
Q Consensus 347 ~~l~~~~I~~IaaG~---~hTlaLt~dG~Vy~wG~n-~~--~~~~~P~~~~~~-~-~~~I~~I--a~G~~hslaLt~dG~ 416 (1071)
..-.+..|+.+.+.. .+.+++|..|.+...--. .. ...........+ . +..++.+ ..+....+++|.+|+
T Consensus 686 ~L~~~E~Vv~~~~v~~~~~~il~vTk~G~iKr~~l~e~~~~~R~~kG~~~lkl~~~~d~lv~v~~v~~~~~v~i~T~~G~ 765 (805)
T PRK05560 686 KLREGDEVVSMDVVREDSQEILTVTENGYGKRTPVSEYRLQGRGGKGVITIKITEKNGKLVGALPVDDDDEIMLITDSGK 765 (805)
T ss_pred cCCCCCEEEEEEEEcCCCcEEEEEEeCCeEEEEEHHHhhccCCCCCcEEeeeccCCCCeEEEEEEecCCCeEEEEecCCe
Confidence 112345666665543 257788888876665322 11 111111111111 1 1233332 234455788888888
Q ss_pred EEEEeCC
Q 001476 417 LFYWASS 423 (1071)
Q Consensus 417 Vy~WG~n 423 (1071)
+..+-.+
T Consensus 766 ~lrf~~~ 772 (805)
T PRK05560 766 LIRTRVS 772 (805)
T ss_pred EEEEEHH
Confidence 8776544
No 202
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.66 E-value=3.9e+02 Score=34.26 Aligned_cols=145 Identities=17% Similarity=0.162 Sum_probs=67.2
Q ss_pred CCce-eEEecCCcEEEEeCCCCCCcCCCCCCCCCcccceeeeccCCCCEEEEEecCCeEEEEeeCCcEEEEecCCCCC--
Q 001476 307 NKHT-AVVSESGEVFTWGCNREGQLGYGTSNSASNYTPRVVESLKGKDLVGVAAAKYHTIVLGADGERVIVARNLKKS-- 383 (1071)
Q Consensus 307 ~~HS-laLt~dG~VY~WG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~I~~IaaG~~hTlaLt~dG~Vy~wG~n~~~~-- 383 (1071)
..|. ++++++|.|+++|.- |.. .... +.-.+ ....+|..+..-.+-.++++.+|+++..-.+....
T Consensus 93 ~~eeLI~v~k~g~v~Vy~~~--ge~---ie~~-svg~e-----~~~~~I~ec~~f~~GVavlt~~g~v~~i~~~~~~~~~ 161 (829)
T KOG2280|consen 93 DDEELICVQKDGTVHVYGLL--GEF---IESN-SVGFE-----SQMSDIVECRFFHNGVAVLTVSGQVILINGVEEPKLR 161 (829)
T ss_pred CCceEEEEeccceEEEeecc--hhh---hccc-ccccc-----cccCceeEEEEecCceEEEecCCcEEEEcCCCcchhh
Confidence 3454 457999999998753 221 1000 00011 12234555555557789999999999876553211
Q ss_pred CCccceeccccCCcEEEEEeCCCcceEEecCCcEE---EEeCCCCCCceeeeeecCCceeEEEEeC--CcEEEEEeeCCc
Q 001476 384 GSTPLKFHRKIKLHVVSIAAGMVHSTALTEDGALF---YWASSDPDLRCQQLYSMCGRNVVSISAG--KYWTAAVTATGD 458 (1071)
Q Consensus 384 ~~~P~~~~~~~~~~I~~Ia~G~~hslaLt~dG~Vy---~WG~n~~~~~p~~v~~l~g~~Vv~IaaG--~~hs~aLT~dG~ 458 (1071)
...+++........-.-+.-+..-++.+.-+-.|. +-+... ......+. .....+++|+.. ..|.+..|.+|.
T Consensus 162 ~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~-~~q~~~~~-~~~~~~~ki~VS~n~~~laLyt~~G~ 239 (829)
T KOG2280|consen 162 KMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEES-RVQLHALS-WPNSSVVKISVSPNRRFLALYTETGK 239 (829)
T ss_pred hCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecc-cccccccC-CCCceEEEEEEcCCcceEEEEecCCc
Confidence 11111222222111111122222222332221111 111111 01111111 113567777765 467778899999
Q ss_pred EEEecC
Q 001476 459 VYMWDG 464 (1071)
Q Consensus 459 Vy~WG~ 464 (1071)
+|+--.
T Consensus 240 i~~vs~ 245 (829)
T KOG2280|consen 240 IWVVSI 245 (829)
T ss_pred EEEEec
Confidence 998653
No 203
>PF08138 Sex_peptide: Sex peptide (SP) family; InterPro: IPR012608 This family consists of Sex Peptides (SP) that are found in Drosophila. On mating, Drosophila females decreases her remating rate and increases her egg-laying rate due, in part, to the transfer of SP from the male to the female. SP are found in seminal fluids transferred from the male to the female during mating. The male seminal fluid proteins are referred to as accessory gland proteins (Acps). The SP is one of the most interesting Acps and plays an important role in reproduction [].; GO: 0005179 hormone activity, 0046008 regulation of female receptivity, post-mating, 0005576 extracellular region; PDB: 2LAQ_A.
Probab=34.45 E-value=16 Score=30.70 Aligned_cols=9 Identities=67% Similarity=1.535 Sum_probs=3.8
Q ss_pred CCCCCCCcc
Q 001476 895 SEGPAWGGA 903 (1071)
Q Consensus 895 ~~~~~~~~~ 903 (1071)
.-||||||-
T Consensus 46 NlGPawGGR 54 (56)
T PF08138_consen 46 NLGPAWGGR 54 (56)
T ss_dssp ---TT-SS-
T ss_pred ccCccccCc
Confidence 469999994
No 204
>PF00167 FGF: Fibroblast growth factor; InterPro: IPR002348 The interleukin-1 (IL1) and heparin-binding growth factor (HBGF) families share low sequence similarity (about 25% []) but have very similar structures. Coupled with the Kunitz-type soybean trypsin inhibitors (STI), they form a structural superfamily. Despite their structural correspondence, however, they show no sequence similarity to the STI family. The crystal structures of interleukin-1 beta and HBGF1 have been solved, showing both families to have the same 12-stranded beta-sheet structure []; the beta-sheets are arranged in 3 similar lobes around a central axis, 6 strands forming an anti-parallel beta-barrel [, ]. The beta-sheets are generally well preserved and the crystal structures superimpose in these areas. The intervening loops are less well conserved - the loop between beta-strands 6 and 7 is slightly longer in interleukin-1 beta.; GO: 0008083 growth factor activity; PDB: 1AFC_F 1BAR_A 2P39_A 1EV2_D 2BFH_A 4FGF_A 1BAS_A 1BFG_A 1FQ9_B 1CVS_A ....
Probab=34.08 E-value=4.1e+02 Score=25.89 Aligned_cols=67 Identities=13% Similarity=0.027 Sum_probs=41.5
Q ss_pred EEEEEecCCeEEEEeeCCcEEEEecCCCCCCCccceeccccCCcEEEEE-eCCCcceEEecCCcEEEEeCC
Q 001476 354 LVGVAAAKYHTIVLGADGERVIVARNLKKSGSTPLKFHRKIKLHVVSIA-AGMVHSTALTEDGALFYWASS 423 (1071)
Q Consensus 354 I~~IaaG~~hTlaLt~dG~Vy~wG~n~~~~~~~P~~~~~~~~~~I~~Ia-~G~~hslaLt~dG~Vy~WG~n 423 (1071)
.+++.|-..+-+.+..||.|-+-+... ...+-+.+..... .++.|- .-....++++..|.||.-...
T Consensus 2 ~~~Ly~~~~~~L~i~~~g~V~gt~~~~--~~~s~~~i~~~~~-g~V~i~~~~s~~YLcmn~~G~ly~~~~~ 69 (122)
T PF00167_consen 2 HVQLYCRTGYFLQINPNGTVDGTGDDN--SPYSVFEIHSVGF-GVVRIRGVKSCRYLCMNKCGRLYGSKNF 69 (122)
T ss_dssp EEEEEETTSEEEEEETTSBEEEESSTT--STTGEEEEEEEET-TEEEEEETTTTEEEEEBTTSBEEEESSB
T ss_pred CEEEEECCCeEEEECCCCeEeCCCCcC--cceeEEEEEeccc-eEEEEEEecceEEEEECCCCeEcccccc
Confidence 467778777888888999988877551 2222233332222 233343 334556889999999986543
No 205
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=33.16 E-value=6.7e+02 Score=30.19 Aligned_cols=19 Identities=11% Similarity=0.174 Sum_probs=16.1
Q ss_pred CCcceEEecCCcEEEEeCC
Q 001476 405 MVHSTALTEDGALFYWASS 423 (1071)
Q Consensus 405 ~~hslaLt~dG~Vy~WG~n 423 (1071)
..|.++++-+|.+|+||.-
T Consensus 233 SGcq~~vtpqg~i~vyGGY 251 (521)
T KOG1230|consen 233 SGCQFSVTPQGGIVVYGGY 251 (521)
T ss_pred CcceEEecCCCcEEEEcch
Confidence 4788999989999999953
No 206
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=32.35 E-value=9.9e+02 Score=29.03 Aligned_cols=153 Identities=16% Similarity=0.152 Sum_probs=80.0
Q ss_pred ccEEEEEEcCCceeE--EecCCcEEEEeCCCCCCcCCCCCCCCCcccceeeeccCCCCEEEEEecCCeEEEEe--eCCcE
Q 001476 298 LKIIAVAAANKHTAV--VSESGEVFTWGCNREGQLGYGTSNSASNYTPRVVESLKGKDLVGVAAAKYHTIVLG--ADGER 373 (1071)
Q Consensus 298 ~~Iv~VacG~~HSla--Lt~dG~VY~WG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~I~~IaaG~~hTlaLt--~dG~V 373 (1071)
..+..+++...-.++ =|..|++|+|=-+ .|.|=.-- .-.-..|+.+....+-+.+++ +||.|
T Consensus 82 g~v~al~s~n~G~~l~ag~i~g~lYlWels-sG~LL~v~-------------~aHYQ~ITcL~fs~dgs~iiTgskDg~V 147 (476)
T KOG0646|consen 82 GPVHALASSNLGYFLLAGTISGNLYLWELS-SGILLNVL-------------SAHYQSITCLKFSDDGSHIITGSKDGAV 147 (476)
T ss_pred cceeeeecCCCceEEEeecccCcEEEEEec-cccHHHHH-------------HhhccceeEEEEeCCCcEEEecCCCccE
Confidence 356666665553333 3689999999755 33321100 001124666655555555554 68889
Q ss_pred EEEecC-----CCCCCCccceeccccCCcEEEEEeCCCc--ceEEe--cCCcEEEEeCCCCCCceeeeeecCCceeEEEE
Q 001476 374 VIVARN-----LKKSGSTPLKFHRKIKLHVVSIAAGMVH--STALT--EDGALFYWASSDPDLRCQQLYSMCGRNVVSIS 444 (1071)
Q Consensus 374 y~wG~n-----~~~~~~~P~~~~~~~~~~I~~Ia~G~~h--slaLt--~dG~Vy~WG~n~~~~~p~~v~~l~g~~Vv~Ia 444 (1071)
++|--. .......|......-...|+++.+|..- ..++| .|..+-+|--....+.-..+.+ ..-+-+-+.
T Consensus 148 ~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp-~si~av~lD 226 (476)
T KOG0646|consen 148 LVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFP-SSIKAVALD 226 (476)
T ss_pred EEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecC-CcceeEEEc
Confidence 988643 2222334444444444588888887763 22222 4555555554332221111111 111233444
Q ss_pred eCCcEEEEEeeCCcEEEecCC
Q 001476 445 AGKYWTAAVTATGDVYMWDGK 465 (1071)
Q Consensus 445 aG~~hs~aLT~dG~Vy~WG~N 465 (1071)
-+..++++=+++|.+|..-.+
T Consensus 227 pae~~~yiGt~~G~I~~~~~~ 247 (476)
T KOG0646|consen 227 PAERVVYIGTEEGKIFQNLLF 247 (476)
T ss_pred ccccEEEecCCcceEEeeehh
Confidence 566777777888888876433
No 207
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=32.28 E-value=1.2e+03 Score=30.13 Aligned_cols=25 Identities=20% Similarity=0.361 Sum_probs=17.5
Q ss_pred ccEEEEE-----EcCCceeEEecCCcEEEE
Q 001476 298 LKIIAVA-----AANKHTAVVSESGEVFTW 322 (1071)
Q Consensus 298 ~~Iv~Va-----cG~~HSlaLt~dG~VY~W 322 (1071)
..|.+|. ....|-++||+|+.+-.+
T Consensus 147 ~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y 176 (717)
T PF10168_consen 147 LEIKQVRWHPWSESDSHLVVLTSDNTLRLY 176 (717)
T ss_pred ceEEEEEEcCCCCCCCeEEEEecCCEEEEE
Confidence 3566764 346799999999975444
No 208
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.38 E-value=9.5e+02 Score=31.09 Aligned_cols=72 Identities=11% Similarity=0.067 Sum_probs=39.9
Q ss_pred CcEEEEEeC--CCcceEEecCCcEEEEeCCCCCCceeeeeecCCceeEEEEeCCcEEEEEeeCCcEEEecCCCCC
Q 001476 396 LHVVSIAAG--MVHSTALTEDGALFYWASSDPDLRCQQLYSMCGRNVVSISAGKYWTAAVTATGDVYMWDGKKSK 468 (1071)
Q Consensus 396 ~~I~~Ia~G--~~hslaLt~dG~Vy~WG~n~~~~~p~~v~~l~g~~Vv~IaaG~~hs~aLT~dG~Vy~WG~N~~~ 468 (1071)
..+.+|+.. ..|.+..|+.|.+|.--..-....+..--......-.-..||.. ++++.-+..|-..|.++..
T Consensus 217 ~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcgnd-aVvl~~e~~l~lvgp~gd~ 290 (829)
T KOG2280|consen 217 SSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGND-AVVLSWEVNLMLVGPPGDS 290 (829)
T ss_pred ceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeecCC-ceEEEEeeeEEEEcCCCCc
Confidence 467777666 45667778999998755432211110000000011133457766 5666667788888877653
No 209
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=31.29 E-value=8.9e+02 Score=28.16 Aligned_cols=250 Identities=11% Similarity=0.083 Sum_probs=120.1
Q ss_pred cCCceeccC----CCceEEEEecCCceEEEEecCCcEEEEecCCCCCCCCCCCccCCCCcceeeeeeeecCCCCCCEEEE
Q 001476 177 KLPCKVDSL----HGFVIKLISAAKFHSVAVTSLGEVYTWGYGRGGRLGHPDFDIHSGQAAVITPRRVTSGLGSRRVKTI 252 (1071)
Q Consensus 177 ~~P~~V~~l----~~~~I~~Va~G~~HslaLT~dG~Vy~WG~N~~GQLG~g~~~~~s~~~~~~~P~~V~~~l~~~~Iv~I 252 (1071)
..|+.++.+ ....|+.||+.+-+.+-=.+|-++..+-.-..-|+|.-.. +. ...+-......+
T Consensus 29 ~~~~l~~lF~~~aH~~sitavAVs~~~~aSGssDetI~IYDm~k~~qlg~ll~--Ha---gsitaL~F~~~~-------- 95 (362)
T KOG0294|consen 29 VKPTLKPLFAFSAHAGSITALAVSGPYVASGSSDETIHIYDMRKRKQLGILLS--HA---GSITALKFYPPL-------- 95 (362)
T ss_pred cceeeeccccccccccceeEEEecceeEeccCCCCcEEEEeccchhhhcceec--cc---cceEEEEecCCc--------
Confidence 345555433 2346888888777766666677888887777667765321 11 111111111011
Q ss_pred EecCceEEEEEcCCcEEEEeCCCCCCcCCCCCCCCCcceeeccCcccEEEEEEcCCceeE--EecCCcEEEEeCCCCCCc
Q 001476 253 AAAKHHTVLATEGGEVFTWGSNREGQLGYTSVDTQPTPRRVSSLKLKIIAVAAANKHTAV--VSESGEVFTWGCNREGQL 330 (1071)
Q Consensus 253 AcG~~HslaLT~dG~VyswG~N~~GQLG~g~~~~~~~P~~V~~l~~~Iv~VacG~~HSla--Lt~dG~VY~WG~N~~GQL 330 (1071)
..+|-+.-.+||.+..|-...+-.++. +..-..+|..|++=..--+| +..|+.+-.|-.- .|.-
T Consensus 96 --S~shLlS~sdDG~i~iw~~~~W~~~~s-----------lK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV-~Gr~ 161 (362)
T KOG0294|consen 96 --SKSHLLSGSDDGHIIIWRVGSWELLKS-----------LKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLV-RGRV 161 (362)
T ss_pred --chhheeeecCCCcEEEEEcCCeEEeee-----------ecccccccceeEecCCCceEEEEcCCceeeeehhh-cCcc
Confidence 123777888899998887655422211 11112345566554444344 4455666667321 1111
Q ss_pred CCCCCCCCCcccceeeeccCCCCEEEEEecCCeEEEEeeCCcEEEEecCCCCCCCccceeccccCCcEEEEEeCCCcceE
Q 001476 331 GYGTSNSASNYTPRVVESLKGKDLVGVAAAKYHTIVLGADGERVIVARNLKKSGSTPLKFHRKIKLHVVSIAAGMVHSTA 410 (1071)
Q Consensus 331 G~g~~~~~~~~~P~~V~~l~~~~I~~IaaG~~hTlaLt~dG~Vy~wG~n~~~~~~~P~~~~~~~~~~I~~Ia~G~~hsla 410 (1071)
+. .......+..|.. ..-|.+|++.+...=.+|..+.. .+.-......++..+-+++...++
T Consensus 162 a~---v~~L~~~at~v~w--------~~~Gd~F~v~~~~~i~i~q~d~A-------~v~~~i~~~~r~l~~~~l~~~~L~ 223 (362)
T KOG0294|consen 162 AF---VLNLKNKATLVSW--------SPQGDHFVVSGRNKIDIYQLDNA-------SVFREIENPKRILCATFLDGSELL 223 (362)
T ss_pred ce---eeccCCcceeeEE--------cCCCCEEEEEeccEEEEEecccH-------hHhhhhhccccceeeeecCCceEE
Confidence 10 0000112222222 22344455444322223333221 110011122456666777666665
Q ss_pred Ee-cCCcEEEEeCCCCCCceeeeeecCCceeEEEEe--CCcEEEEE--eeCCcEEEecCCCCCCCCCc
Q 001476 411 LT-EDGALFYWASSDPDLRCQQLYSMCGRNVVSISA--GKYWTAAV--TATGDVYMWDGKKSKDNPPL 473 (1071)
Q Consensus 411 Lt-~dG~Vy~WG~n~~~~~p~~v~~l~g~~Vv~Iaa--G~~hs~aL--T~dG~Vy~WG~N~~~~~~~~ 473 (1071)
+- +|+.+-.|-.++ ..|......-..+|..|.. -..|.+++ .+||.+-+|...-.....|.
T Consensus 224 vG~d~~~i~~~D~ds--~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~~~~ 289 (362)
T KOG0294|consen 224 VGGDNEWISLKDTDS--DTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKKRPT 289 (362)
T ss_pred EecCCceEEEeccCC--CccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccccccCCcc
Confidence 54 345566666554 1222222222246777663 33455554 48999999986655444443
No 210
>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses. These proteins may be involved in promoting survival of infected macrophages [].
Probab=30.49 E-value=74 Score=33.86 Aligned_cols=84 Identities=17% Similarity=0.162 Sum_probs=52.0
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCC--CCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCcccccccc
Q 001476 29 KDLCLAVREGSLADVESALALLKKNGGNINSRNIF--GLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRAL 106 (1071)
Q Consensus 29 TpLh~Aa~~G~~~~v~~iL~lLl~~Gadin~~d~~--G~TpLH~Aa~~g~~eivk~LL~~GAd~~~~d~~~G~TpL~~A~ 106 (1071)
+-+-.|....+++...---.++.++...-...|.. =..-|.+|+..|-.+.+.-.|++|.+++. ++|..|+
T Consensus 106 ~iFdIA~~~kDlsLyslGY~l~~~~~~~~~~~d~~~ll~~hl~~a~~kgll~F~letlkygg~~~~-------~vls~Av 178 (192)
T PF03158_consen 106 DIFDIAFAKKDLSLYSLGYKLLFNRMMSEHNEDPTSLLTQHLEKAAAKGLLPFVLETLKYGGNVDI-------IVLSQAV 178 (192)
T ss_pred hhhhhhhhccchhHHHHHHHHHHhhcccccccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCCcccH-------HHHHHHH
Confidence 34556666777666553334444443322111211 11356778888888888888888877763 5777788
Q ss_pred ccccccchhhhhc
Q 001476 107 HFGHLAVASVLLQ 119 (1071)
Q Consensus 107 ~~G~~~iv~lLl~ 119 (1071)
.+.|..+..+++.
T Consensus 179 ~ynhRkIL~yfi~ 191 (192)
T PF03158_consen 179 KYNHRKILDYFIR 191 (192)
T ss_pred HhhHHHHHHHhhc
Confidence 8888888777664
No 211
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=30.13 E-value=8.2e+02 Score=27.40 Aligned_cols=180 Identities=16% Similarity=0.122 Sum_probs=90.6
Q ss_pred cEEEEEEcCCceeEEe--cCCcEEEEeCCCCCCcCCCCCCCCCcccceeeeccCCCCEEEEEecCCeEEEEeeCCcEEEE
Q 001476 299 KIIAVAAANKHTAVVS--ESGEVFTWGCNREGQLGYGTSNSASNYTPRVVESLKGKDLVGVAAAKYHTIVLGADGERVIV 376 (1071)
Q Consensus 299 ~Iv~VacG~~HSlaLt--~dG~VY~WG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~I~~IaaG~~hTlaLt~dG~Vy~w 376 (1071)
+|-.|..-...++++. -|-.+-+|-+-. ..+.|.++-.-....|..|.....-.++=..||++-.+
T Consensus 103 qVNtV~fNeesSVv~SgsfD~s~r~wDCRS------------~s~ePiQildea~D~V~Si~v~~heIvaGS~DGtvRty 170 (307)
T KOG0316|consen 103 QVNTVRFNEESSVVASGSFDSSVRLWDCRS------------RSFEPIQILDEAKDGVSSIDVAEHEIVAGSVDGTVRTY 170 (307)
T ss_pred eeeEEEecCcceEEEeccccceeEEEEccc------------CCCCccchhhhhcCceeEEEecccEEEeeccCCcEEEE
Confidence 3444444444444442 244566675431 13456666433334688888777777777788886654
Q ss_pred ec----CCCCCCCccceeccccCCcEEEEE--eCCCcceEEecCCcEEEEeCCCCCCceeeeeecCCce------eEEEE
Q 001476 377 AR----NLKKSGSTPLKFHRKIKLHVVSIA--AGMVHSTALTEDGALFYWASSDPDLRCQQLYSMCGRN------VVSIS 444 (1071)
Q Consensus 377 G~----n~~~~~~~P~~~~~~~~~~I~~Ia--~G~~hslaLt~dG~Vy~WG~n~~~~~p~~v~~l~g~~------Vv~Ia 444 (1071)
-- -....... +|..|+ -..+++++-.-++.+-..-.....+ +....+.+ =-.+.
T Consensus 171 diR~G~l~sDy~g~----------pit~vs~s~d~nc~La~~l~stlrLlDk~tGkl----L~sYkGhkn~eykldc~l~ 236 (307)
T KOG0316|consen 171 DIRKGTLSSDYFGH----------PITSVSFSKDGNCSLASSLDSTLRLLDKETGKL----LKSYKGHKNMEYKLDCCLN 236 (307)
T ss_pred EeecceeehhhcCC----------cceeEEecCCCCEEEEeeccceeeecccchhHH----HHHhcccccceeeeeeeec
Confidence 32 11111222 233333 2333333333333333222111100 00000000 01122
Q ss_pred eCCcEEEEEeeCCcEEEecCCCCCCCCCceEEecCcccEEEEEecCCeEEEEEeCCCCccCC
Q 001476 445 AGKYWTAAVTATGDVYMWDGKKSKDNPPLVTRLHGIKKATSVSVGETHLLIVGSLYHPIYPP 506 (1071)
Q Consensus 445 aG~~hs~aLT~dG~Vy~WG~N~~~~~~~~p~~v~g~~~V~~Va~G~~HtlaL~s~~~~v~~w 506 (1071)
-...|.+--.+||.||.|..-+..+.. -.++...-.|++++|-..--.+++...+..++|
T Consensus 237 qsdthV~sgSEDG~Vy~wdLvd~~~~s--k~~~~~~v~v~dl~~hp~~~~f~~A~~~~~~~~ 296 (307)
T KOG0316|consen 237 QSDTHVFSGSEDGKVYFWDLVDETQIS--KLSVVSTVIVTDLSCHPTMDDFITATGHGDLFW 296 (307)
T ss_pred ccceeEEeccCCceEEEEEeccceeee--eeccCCceeEEeeecccCccceeEecCCceece
Confidence 244666667899999999866654321 123334335788888877777777776777888
No 212
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=30.06 E-value=4.4e+02 Score=30.09 Aligned_cols=135 Identities=20% Similarity=0.255 Sum_probs=70.8
Q ss_pred cCCceeEEecCCcEEEEeCCCCCCcCCCCCCCCCcccceeeeccCCCCEEEEEecCCeEEEEeeCCcEEEEecCCCCCCC
Q 001476 306 ANKHTAVVSESGEVFTWGCNREGQLGYGTSNSASNYTPRVVESLKGKDLVGVAAAKYHTIVLGADGERVIVARNLKKSGS 385 (1071)
Q Consensus 306 G~~HSlaLt~dG~VY~WG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~I~~IaaG~~hTlaLt~dG~Vy~wG~n~~~~~~ 385 (1071)
+.-|-++...||.||.-+.. .|.+|+-+-.+. +-..+..-.+. .-|.+++..||..|..-....-...
T Consensus 62 ~ap~dvapapdG~VWft~qg-~gaiGhLdP~tG---ev~~ypLg~Ga--------~Phgiv~gpdg~~Witd~~~aI~R~ 129 (353)
T COG4257 62 SAPFDVAPAPDGAVWFTAQG-TGAIGHLDPATG---EVETYPLGSGA--------SPHGIVVGPDGSAWITDTGLAIGRL 129 (353)
T ss_pred CCccccccCCCCceEEecCc-cccceecCCCCC---ceEEEecCCCC--------CCceEEECCCCCeeEecCcceeEEe
Confidence 34577888899999987654 455555332211 11111211222 2456666666666655332100000
Q ss_pred cc-----ceeccccCCcEEEEEeCCCcceEEecCCcEEEEeCCCCCCceeeeeecCCceeEEEE----eCCcEEEEEeeC
Q 001476 386 TP-----LKFHRKIKLHVVSIAAGMVHSTALTEDGALFYWASSDPDLRCQQLYSMCGRNVVSIS----AGKYWTAAVTAT 456 (1071)
Q Consensus 386 ~P-----~~~~~~~~~~I~~Ia~G~~hslaLt~dG~Vy~WG~n~~~~~p~~v~~l~g~~Vv~Ia----aG~~hs~aLT~d 456 (1071)
.| ..++.. .+.+-++-.+.+++..|.||.-|.+...- .+... .++++|. .+.-..++.|-+
T Consensus 130 dpkt~evt~f~lp-----~~~a~~nlet~vfD~~G~lWFt~q~G~yG---rLdPa--~~~i~vfpaPqG~gpyGi~atpd 199 (353)
T COG4257 130 DPKTLEVTRFPLP-----LEHADANLETAVFDPWGNLWFTGQIGAYG---RLDPA--RNVISVFPAPQGGGPYGICATPD 199 (353)
T ss_pred cCcccceEEeecc-----cccCCCcccceeeCCCccEEEeeccccce---ecCcc--cCceeeeccCCCCCCcceEECCC
Confidence 00 111111 34456677889999999999998764211 11111 2233332 233456778999
Q ss_pred CcEEEe
Q 001476 457 GDVYMW 462 (1071)
Q Consensus 457 G~Vy~W 462 (1071)
|+||.-
T Consensus 200 Gsvwya 205 (353)
T COG4257 200 GSVWYA 205 (353)
T ss_pred CcEEEE
Confidence 999976
No 213
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins.
Probab=28.95 E-value=87 Score=23.58 Aligned_cols=25 Identities=24% Similarity=0.141 Sum_probs=21.6
Q ss_pred ceEEEEecCC-ceEEEEecCCcEEEE
Q 001476 188 FVIKLISAAK-FHSVAVTSLGEVYTW 212 (1071)
Q Consensus 188 ~~I~~Va~G~-~HslaLT~dG~Vy~W 212 (1071)
..+++|++|. ....+++.+|.||..
T Consensus 8 g~l~~isvg~~~~vW~V~~~g~i~~r 33 (35)
T smart00706 8 GELVQVSVGPSDTVWAVNSDGNIYRR 33 (35)
T ss_pred CCEEEEEECCCCeEEEEcCCCCEEEE
Confidence 3689999999 888899999999864
No 214
>PF00167 FGF: Fibroblast growth factor; InterPro: IPR002348 The interleukin-1 (IL1) and heparin-binding growth factor (HBGF) families share low sequence similarity (about 25% []) but have very similar structures. Coupled with the Kunitz-type soybean trypsin inhibitors (STI), they form a structural superfamily. Despite their structural correspondence, however, they show no sequence similarity to the STI family. The crystal structures of interleukin-1 beta and HBGF1 have been solved, showing both families to have the same 12-stranded beta-sheet structure []; the beta-sheets are arranged in 3 similar lobes around a central axis, 6 strands forming an anti-parallel beta-barrel [, ]. The beta-sheets are generally well preserved and the crystal structures superimpose in these areas. The intervening loops are less well conserved - the loop between beta-strands 6 and 7 is slightly longer in interleukin-1 beta.; GO: 0008083 growth factor activity; PDB: 1AFC_F 1BAR_A 2P39_A 1EV2_D 2BFH_A 4FGF_A 1BAS_A 1BFG_A 1FQ9_B 1CVS_A ....
Probab=28.80 E-value=3.8e+02 Score=26.17 Aligned_cols=66 Identities=9% Similarity=-0.036 Sum_probs=42.4
Q ss_pred EEEEEeCCCcceEEecCCcEEEEeCCCCCCceeeeeecCCceeEEEEeCCcEEEEEeeCCcEEEec
Q 001476 398 VVSIAAGMVHSTALTEDGALFYWASSDPDLRCQQLYSMCGRNVVSISAGKYWTAAVTATGDVYMWD 463 (1071)
Q Consensus 398 I~~Ia~G~~hslaLt~dG~Vy~WG~n~~~~~p~~v~~l~g~~Vv~IaaG~~hs~aLT~dG~Vy~WG 463 (1071)
.+++.|-..+.+.+..||.|-.-+..........+.......|.=-.+-....++++..|.||+=.
T Consensus 2 ~~~Ly~~~~~~L~i~~~g~V~gt~~~~~~~s~~~i~~~~~g~V~i~~~~s~~YLcmn~~G~ly~~~ 67 (122)
T PF00167_consen 2 HVQLYCRTGYFLQINPNGTVDGTGDDNSPYSVFEIHSVGFGVVRIRGVKSCRYLCMNKCGRLYGSK 67 (122)
T ss_dssp EEEEEETTSEEEEEETTSBEEEESSTTSTTGEEEEEEEETTEEEEEETTTTEEEEEBTTSBEEEES
T ss_pred CEEEEECCCeEEEECCCCeEeCCCCcCcceeEEEEEeccceEEEEEEecceEEEEECCCCeEcccc
Confidence 567888888888999999998877663332222333322222322233346778899999999854
No 215
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=28.24 E-value=1.3e+03 Score=28.94 Aligned_cols=217 Identities=12% Similarity=0.108 Sum_probs=121.5
Q ss_pred cCceEEEEEcCCcEEEEeCCCCCCcCCCCCCCCCcceeeccCcccEEEEEEcCCceeEEecCCcEEEEeCCCCCCcCCCC
Q 001476 255 AKHHTVLATEGGEVFTWGSNREGQLGYTSVDTQPTPRRVSSLKLKIIAVAAANKHTAVVSESGEVFTWGCNREGQLGYGT 334 (1071)
Q Consensus 255 G~~HslaLT~dG~VyswG~N~~GQLG~g~~~~~~~P~~V~~l~~~Iv~VacG~~HSlaLt~dG~VY~WG~N~~GQLG~g~ 334 (1071)
|.+--+--+.|.++..|-.+. |++-. .+.+...-|..+.-+..+.+--+.|..|.+|=..
T Consensus 260 ~~~~lvsgS~D~t~rvWd~~s-g~C~~----------~l~gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~--------- 319 (537)
T KOG0274|consen 260 GGDKLVSGSTDKTERVWDCST-GECTH----------SLQGHTSSVRCLTIDPFLLVSGSRDNTVKVWDVT--------- 319 (537)
T ss_pred CCCEEEEEecCCcEEeEecCC-CcEEE----------EecCCCceEEEEEccCceEeeccCCceEEEEecc---------
Confidence 444444445677888886443 33211 0111122344444445554444567778888433
Q ss_pred CCCCCcccceeeecc--CCCCEEEEEecCCeEEEEeeCCcEEEEecCCCCCCCccceeccccCCcEEEEEeCC-CcceEE
Q 001476 335 SNSASNYTPRVVESL--KGKDLVGVAAAKYHTIVLGADGERVIVARNLKKSGSTPLKFHRKIKLHVVSIAAGM-VHSTAL 411 (1071)
Q Consensus 335 ~~~~~~~~P~~V~~l--~~~~I~~IaaG~~hTlaLt~dG~Vy~wG~n~~~~~~~P~~~~~~~~~~I~~Ia~G~-~hslaL 411 (1071)
.+..+..+ ....|..|.++....+.-+.||.|-+|-.... ..+.........|..+..+. .+.+=-
T Consensus 320 -------n~~~l~l~~~h~~~V~~v~~~~~~lvsgs~d~~v~VW~~~~~----~cl~sl~gH~~~V~sl~~~~~~~~~Sg 388 (537)
T KOG0274|consen 320 -------NGACLNLLRGHTGPVNCVQLDEPLLVSGSYDGTVKVWDPRTG----KCLKSLSGHTGRVYSLIVDSENRLLSG 388 (537)
T ss_pred -------CcceEEEeccccccEEEEEecCCEEEEEecCceEEEEEhhhc----eeeeeecCCcceEEEEEecCcceEEee
Confidence 12223222 23468889999999999999999888865411 11222222233788877777 676666
Q ss_pred ecCCcEEEEeCCCCCCceeeeeecCCceeEEEEeCCcEEEEEeeCCcEEEecCCCCCCCCCceEEecCcccEEEEEecCC
Q 001476 412 TEDGALFYWASSDPDLRCQQLYSMCGRNVVSISAGKYWTAAVTATGDVYMWDGKKSKDNPPLVTRLHGIKKATSVSVGET 491 (1071)
Q Consensus 412 t~dG~Vy~WG~n~~~~~p~~v~~l~g~~Vv~IaaG~~hs~aLT~dG~Vy~WG~N~~~~~~~~p~~v~g~~~V~~Va~G~~ 491 (1071)
..|+.+-+|-..... .+.........-+..+.+-..|-+--..||.+..|..+..+.......+ ....|..++.+ .
T Consensus 389 s~D~~IkvWdl~~~~-~c~~tl~~h~~~v~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~--~~~~v~~l~~~-~ 464 (537)
T KOG0274|consen 389 SLDTTIKVWDLRTKR-KCIHTLQGHTSLVSSLLLRDNFLVSSSADGTIKLWDAEEGECLRTLEGR--HVGGVSALALG-K 464 (537)
T ss_pred eeccceEeecCCchh-hhhhhhcCCcccccccccccceeEeccccccEEEeecccCceeeeeccC--CcccEEEeecC-c
Confidence 677888888766542 1111111111224455555566666678999999976665432221111 22356666666 6
Q ss_pred eEEEEEeCCCCccCC
Q 001476 492 HLLIVGSLYHPIYPP 506 (1071)
Q Consensus 492 HtlaL~s~~~~v~~w 506 (1071)
+.++.....+.+.-|
T Consensus 465 ~~il~s~~~~~~~l~ 479 (537)
T KOG0274|consen 465 EEILCSSDDGSVKLW 479 (537)
T ss_pred ceEEEEecCCeeEEE
Confidence 666666666776666
No 216
>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].
Probab=28.21 E-value=24 Score=31.71 Aligned_cols=47 Identities=23% Similarity=0.279 Sum_probs=39.2
Q ss_pred cHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCccccccccccccccchhhhhcc
Q 001476 66 TPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRALHFGHLAVASVLLQS 120 (1071)
Q Consensus 66 TpLH~Aa~~g~~eivk~LL~~GAd~~~~d~~~G~TpL~~A~~~G~~~iv~lLl~~ 120 (1071)
.-|.+|+..|+.++++.+++.+ .++ ...+..|....+.+++++|++.
T Consensus 8 ~tl~~Ai~GGN~eII~~c~~~~-~~~-------~~~l~~AI~~H~n~i~~~l~~~ 54 (76)
T PF11929_consen 8 KTLEYAIIGGNFEIINICLKKN-KPD-------NDCLEYAIKSHNNEIADWLIEN 54 (76)
T ss_pred HHHHHHHhCCCHHHHHHHHHHh-ccH-------HHHHHHHHHHhhHHHHHHHHHh
Confidence 4689999999999999999766 332 2479999999999999999875
No 217
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=27.80 E-value=9.9e+02 Score=27.57 Aligned_cols=19 Identities=5% Similarity=-0.064 Sum_probs=13.3
Q ss_pred cEEEEEeeCCcEEEecCCC
Q 001476 448 YWTAAVTATGDVYMWDGKK 466 (1071)
Q Consensus 448 ~hs~aLT~dG~Vy~WG~N~ 466 (1071)
.+.++.+.+|.||+|....
T Consensus 321 ~~l~~~~~~G~l~~~d~~t 339 (377)
T TIGR03300 321 GYLVVGDFEGYLHWLSRED 339 (377)
T ss_pred CEEEEEeCCCEEEEEECCC
Confidence 4666677888888886443
No 218
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins.
Probab=26.95 E-value=1e+02 Score=23.13 Aligned_cols=25 Identities=12% Similarity=0.299 Sum_probs=21.5
Q ss_pred ccEEEEEEcC-CceeEEecCCcEEEE
Q 001476 298 LKIIAVAAAN-KHTAVVSESGEVFTW 322 (1071)
Q Consensus 298 ~~Iv~VacG~-~HSlaLt~dG~VY~W 322 (1071)
..+++|++|. ....+++.+|.||..
T Consensus 8 g~l~~isvg~~~~vW~V~~~g~i~~r 33 (35)
T smart00706 8 GELVQVSVGPSDTVWAVNSDGNIYRR 33 (35)
T ss_pred CCEEEEEECCCCeEEEEcCCCCEEEE
Confidence 4799999999 788889999999864
No 219
>TIGR01062 parC_Gneg DNA topoisomerase IV, A subunit, proteobacterial. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=26.71 E-value=1.2e+03 Score=30.50 Aligned_cols=139 Identities=14% Similarity=0.099 Sum_probs=0.0
Q ss_pred eeEEecCCcEEEEeCCCCCCcCCCCCCCCCcccceeeeccCCCCEEEEEecCCe--EEEEeeCCcEEEEecC-----CCC
Q 001476 310 TAVVSESGEVFTWGCNREGQLGYGTSNSASNYTPRVVESLKGKDLVGVAAAKYH--TIVLGADGERVIVARN-----LKK 382 (1071)
Q Consensus 310 SlaLt~dG~VY~WG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~I~~IaaG~~h--TlaLt~dG~Vy~wG~n-----~~~ 382 (1071)
++++|.+|.|-.---. .+.+..+..-.+..+..+..+..+ .+++|++|.+|.+..+ ...
T Consensus 497 ~VilTk~G~IKr~~~~--------------~~~~saikLKegD~L~~~~~~~t~d~LllfTs~Gr~yrf~v~eIP~GR~a 562 (735)
T TIGR01062 497 TIILSKMGWVRSAKGH--------------DIDLSTLKYKAGDSEKAIIEGKSNQKVVFIDSTGRSYALDPDNLPSARGQ 562 (735)
T ss_pred EEEEecCCEEEecccc--------------ccchhccCcCCCCeEEEEEEecCCCEEEEEECCCeEEEEEhHhcCcCccC
Q ss_pred CCCccceeccccCCcEEEEEeCCCc--ceEEecCCcEEEEeCCC------CCCceeeeeecCCceeEEEEeCCc-EEEEE
Q 001476 383 SGSTPLKFHRKIKLHVVSIAAGMVH--STALTEDGALFYWASSD------PDLRCQQLYSMCGRNVVSISAGKY-WTAAV 453 (1071)
Q Consensus 383 ~~~~P~~~~~~~~~~I~~Ia~G~~h--slaLt~dG~Vy~WG~n~------~~~~p~~v~~l~g~~Vv~IaaG~~-hs~aL 453 (1071)
.......+....+..|+.+.+.... .+++|+.|..+..-.++ .+.....+..-...-......+.. +.+++
T Consensus 563 GgpV~~~L~L~~gE~Iv~~~~v~~~~~lLlaT~~GyGKrt~lse~~~~~RaGKgvi~Lk~~d~lv~v~~v~~~dd~V~li 642 (735)
T TIGR01062 563 GEPLTGKLLLPIGATITNILMYSPNQLLLMASDAGYGFLCNFNDLIARNKAGKALINLPENASVIAPLPVNGDSDMIAAI 642 (735)
T ss_pred CceeEeeecCCCCCEEEEEEEecCCcEEEEEEcCCcEEEEEhHhccccCcCCeEEEEeCCCCEEEEEEEEcCCCCEEEEE
Q ss_pred eeCCcEEEe
Q 001476 454 TATGDVYMW 462 (1071)
Q Consensus 454 T~dG~Vy~W 462 (1071)
|++|+++.+
T Consensus 643 T~~GrlLrf 651 (735)
T TIGR01062 643 TEAGRMLVF 651 (735)
T ss_pred eCCCcEEEE
No 220
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=26.25 E-value=1.6e+03 Score=29.44 Aligned_cols=165 Identities=14% Similarity=0.113 Sum_probs=84.0
Q ss_pred ceeeeeeeecCCCCCCEEEEEecCceEEEEEcCCcEEEE-eCCCCCCcCCCCCCCCCcceeeccCcccEEEEEEcCCcee
Q 001476 233 AVITPRRVTSGLGSRRVKTIAAAKHHTVLATEGGEVFTW-GSNREGQLGYTSVDTQPTPRRVSSLKLKIIAVAAANKHTA 311 (1071)
Q Consensus 233 ~~~~P~~V~~~l~~~~Iv~IAcG~~HslaLT~dG~Vysw-G~N~~GQLG~g~~~~~~~P~~V~~l~~~Iv~VacG~~HSl 311 (1071)
.++.|.++.....+.-...+.+-..++.+++.-|+.|-- -.|...-|+.+ ..+..+|..+++-..|++
T Consensus 22 ~iFapfR~lG~vsn~VP~~~~~~~~~~~vtt~vgksfqvYd~~kl~ll~vs-----------~~lp~~I~alas~~~~vy 90 (910)
T KOG1539|consen 22 DIFAPFRALGYVSNGVPFRVVALGSTFYVTTCVGKSFQVYDVNKLNLLFVS-----------KPLPDKITALASDKDYVY 90 (910)
T ss_pred ccccchhhhceecCCCceeeeecCceEEEEEecCceEEEEeccceEEEEec-----------CCCCCceEEEEecCceEE
Confidence 344454444222222223444445666677777766532 22222222221 123457888888777666
Q ss_pred EEecCCcEEEEeCCCCCCcCCCCCCCCCcccceeeeccCCCCEEEEEecCCeEEEEeeCCcEEEEecCCC-CCCCcccee
Q 001476 312 VVSESGEVFTWGCNREGQLGYGTSNSASNYTPRVVESLKGKDLVGVAAAKYHTIVLGADGERVIVARNLK-KSGSTPLKF 390 (1071)
Q Consensus 312 aLt~dG~VY~WG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~I~~IaaG~~hTlaLt~dG~Vy~wG~n~~-~~~~~P~~~ 390 (1071)
+-. ..+||+|-.+..-. .+......+|.....=..|.++++.++.+|+|-.... ........+
T Consensus 91 ~A~-g~~i~~~~rgk~i~---------------~~~~~~~a~v~~l~~fGe~lia~d~~~~l~vw~~s~~~~e~~l~~~~ 154 (910)
T KOG1539|consen 91 VAS-GNKIYAYARGKHIR---------------HTTLLHGAKVHLLLPFGEHLIAVDISNILFVWKTSSIQEELYLQSTF 154 (910)
T ss_pred Eec-CcEEEEEEccceEE---------------EEeccccceEEEEeeecceEEEEEccCcEEEEEecccccccccccee
Confidence 654 45789886552110 1111122356666667789999999999999976542 111111111
Q ss_pred ccccCCcEEEEEeC---CCcceEEecCCcEEEEeCCC
Q 001476 391 HRKIKLHVVSIAAG---MVHSTALTEDGALFYWASSD 424 (1071)
Q Consensus 391 ~~~~~~~I~~Ia~G---~~hslaLt~dG~Vy~WG~n~ 424 (1071)
.......|+.|.-= -+-.++-...|++-.|.-..
T Consensus 155 ~~~~~~~Ital~HP~TYLNKIvvGs~~G~lql~Nvrt 191 (910)
T KOG1539|consen 155 LKVEGDFITALLHPSTYLNKIVVGSSQGRLQLWNVRT 191 (910)
T ss_pred eeccCCceeeEecchhheeeEEEeecCCcEEEEEecc
Confidence 11111124444322 22233335778888887554
No 221
>PRK13979 DNA topoisomerase IV subunit A; Provisional
Probab=25.96 E-value=1.7e+03 Score=29.86 Aligned_cols=158 Identities=6% Similarity=0.024 Sum_probs=77.4
Q ss_pred CceEEEEEcCCcEEEEeCCCCCCcCCCCCCCCCcceeeccCcccEEEEEEc--CCceeEEecCCcEEEEeCCCCCCcCCC
Q 001476 256 KHHTVLATEGGEVFTWGSNREGQLGYTSVDTQPTPRRVSSLKLKIIAVAAA--NKHTAVVSESGEVFTWGCNREGQLGYG 333 (1071)
Q Consensus 256 ~~HslaLT~dG~VyswG~N~~GQLG~g~~~~~~~P~~V~~l~~~Iv~VacG--~~HSlaLt~dG~VY~WG~N~~GQLG~g 333 (1071)
..-.+.||.+|-+-..-...|..-+.+... ..... ...+..+..+ .++-+++|+.|+||..=...--..
T Consensus 516 E~v~v~lS~~GyIKr~~~~~~~~q~~g~~~-----~~~ke-~D~i~~~~~~~T~d~LL~FTn~Gkvy~ikvy~IPe~--- 586 (957)
T PRK13979 516 EDVVITLSNEGFIKRIPLKSYNRSNSNVED-----IEYRE-GDFNKFLIQSNTKDTLLIFTDKGNMYQIKGINIPEF--- 586 (957)
T ss_pred cceEEEEecCCEEEEccccccccccccccc-----cccCC-CCceEEEEEEcCCCEEEEEECCCeEEEEEeeeCCCC---
Confidence 455678888887665443333211111000 00001 1245554444 345567799999998754322221
Q ss_pred CCCCCCcccceeeecc--CCCCEEEEEecC-----CeEEEEeeCCcEEEEecC-CCCCCCccceeccccCCcEEEEEeCC
Q 001476 334 TSNSASNYTPRVVESL--KGKDLVGVAAAK-----YHTIVLGADGERVIVARN-LKKSGSTPLKFHRKIKLHVVSIAAGM 405 (1071)
Q Consensus 334 ~~~~~~~~~P~~V~~l--~~~~I~~IaaG~-----~hTlaLt~dG~Vy~wG~n-~~~~~~~P~~~~~~~~~~I~~Ia~G~ 405 (1071)
.....-...-..+..+ .+.+|+.+.+-. .+.+++|.+|.+...--. +......-.-+....+..++.+....
T Consensus 587 ~~~~~G~~I~nll~~~~~~~EkIv~i~~~~ef~~~~~lv~~Tk~G~VKrt~L~ef~~~r~~~~aikL~e~DeLV~v~~~~ 666 (957)
T PRK13979 587 KWKEKGERLDEIIKGIDLESEKIIEAYSIEDFTPQKDFIFITDSGGIKKTSLDKFVTNYTKLMALKLKKGEKLIKVKLVD 666 (957)
T ss_pred CcCCCCeEHHHhhhccCCCCCeEEEEEEeccCCCCCEEEEEECCCeEEEEehhhccccccceEEEEcCCCCEEEEEEEcC
Confidence 1111001111112111 356777777653 246888999998876533 11111111122222334555544332
Q ss_pred -----CcceEEecCCcEEEEeC
Q 001476 406 -----VHSTALTEDGALFYWAS 422 (1071)
Q Consensus 406 -----~hslaLt~dG~Vy~WG~ 422 (1071)
.+.+++|++|.+..+-.
T Consensus 667 ~~~~~~~Iil~Tk~G~airF~~ 688 (957)
T PRK13979 667 RTREEKFIKIKTKKGLSFTVEE 688 (957)
T ss_pred CCCCCCEEEEEeCCCcEEEEEH
Confidence 35789999998887754
No 222
>PF02166 Androgen_recep: Androgen receptor; InterPro: IPR001103 Steroid or nuclear hormone receptors (NRs) constitute an important super-family of transcription regulators that are involved in diverse physiological functions, including control of embryonic development, cell differentiation and homeostasis. Members include the steroid hormone receptors and receptors for thyroid hormone, retinoids and 1,25-dihydroxy-vitamin D3. The proteins function as dimeric molecules in the nucleus to regulate the transcription of target genes in a ligand-responsive manner [, ]. NRs are extremely important in medical research, a large number of them being implicated in diseases such as cancer, diabetes and hormone resistance syndromes. Many do not yet have a defined ligand and are accordingly termed "orphan" receptors. More than 300 NRs have been described to date and a new system has recently been introduced in an attempt to rationalise the increasingly complex set of names used to describe superfamily members. The androgen receptor (AR) consists of 3 functional and structural domains: an N-terminal (modulatory) domain; a DNA binding domain (IPR001628 from INTERPRO) that mediates specific binding to target DNA sequences (ligand-responsive elements); and a hormone binding domain. The N-terminal domain (NTD) is unique to the androgen receptors and spans approximately the first 530 residues; the highly-conserved DNA-binding domain is smaller (around 65 residues) and occupies the central portion of the protein; and the hormone ligand binding domain (LBD) lies at the receptor C terminus. In the absence of ligand, steroid hormone receptors are thought to be weakly associated with nuclear components; hormone binding greatly increases receptor affinity. The LBDs of steroid hormone receptors fold into 12 helices that form a ligand-binding pocket. When an agonist is bound, helix 12 folds over the pocket to enclose the ligand []. When an antagonist is unbound, helix 12 is positioned away from the pocket in a way that interferes with the binding of coactivators to a groove in the hormone-binding domain formed after ligand binding. In AR, ligand binding that induces folding of helix 12 to overlie the pocket discloses a groove that binds a region of the NTD. Coactivator molecules can also bind to this groove, but the predominant site for coactivator binding to AR is in the NTD. AR ligand resides in a pocket and primarily contacts helices 4, 5, and 10. The DNA-binding region includes eight cysteine residues that form two coordination complexes, each composed of four cysteines and a Zn2+ ion. These two zinc fingers form the structure that binds to the major groove of DNA. The second zinc finger stabilises the binding complex by hydrophobic interactions with the first finger and contributes to specificity of receptor DNA binding. It is also necessary for receptor dimerisation that occurs during DNA binding Defects in the androgen receptor cause testicular feminisation syndrome, androgen insensibility syndrome (AIS) [, ]. AIS may be complete (CAIS), where external genitalia are phenotypically female; partial (PAIS), where genitalia are substantively ambiguous; or mild (MAIS), where external genitalia are normal male, or nearly so. Defects in the receptor also cause X-linked spinal and bulbar muscular atrophy (also known as Kennedy's disease).; GO: 0003677 DNA binding, 0004882 androgen receptor activity, 0005496 steroid binding, 0006355 regulation of transcription, DNA-dependent, 0030521 androgen receptor signaling pathway, 0005634 nucleus; PDB: 1XOW_B 2Q7K_B 2Q7I_B.
Probab=25.72 E-value=23 Score=40.40 Aligned_cols=15 Identities=47% Similarity=0.756 Sum_probs=0.0
Q ss_pred ceeeeecccCCCCCC
Q 001476 869 GLSMFLSGALDDTPK 883 (1071)
Q Consensus 869 ~~~~~~~~~~~~~~~ 883 (1071)
-|||+=+|+||+++.
T Consensus 318 tlsLyksgalde~aa 332 (423)
T PF02166_consen 318 TLSLYKSGALDEAAA 332 (423)
T ss_dssp ---------------
T ss_pred ccccccccccccccc
Confidence 378888999999863
No 223
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=25.39 E-value=5.1e+02 Score=32.77 Aligned_cols=32 Identities=13% Similarity=0.104 Sum_probs=22.0
Q ss_pred EEEEecC-CceEEEEecCCcEEEEecCCCCCCC
Q 001476 190 IKLISAA-KFHSVAVTSLGEVYTWGYGRGGRLG 221 (1071)
Q Consensus 190 I~~Va~G-~~HslaLT~dG~Vy~WG~N~~GQLG 221 (1071)
|-.|+.- ...-++|..+.+||.+--|+.++|-
T Consensus 15 i~d~afkPDGsqL~lAAg~rlliyD~ndG~llq 47 (1081)
T KOG1538|consen 15 INDIAFKPDGTQLILAAGSRLLVYDTSDGTLLQ 47 (1081)
T ss_pred hheeEECCCCceEEEecCCEEEEEeCCCccccc
Confidence 4444442 3345667788899999999888774
No 224
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=24.72 E-value=1.7e+03 Score=29.28 Aligned_cols=204 Identities=12% Similarity=0.089 Sum_probs=100.1
Q ss_pred cCCceEEEEecCCcEEEEecCCCCC---CCCCCCccCCCCcceeeeeeeecCCCCCCEEEEEec-----CceEEEEEcCC
Q 001476 195 AAKFHSVAVTSLGEVYTWGYGRGGR---LGHPDFDIHSGQAAVITPRRVTSGLGSRRVKTIAAA-----KHHTVLATEGG 266 (1071)
Q Consensus 195 ~G~~HslaLT~dG~Vy~WG~N~~GQ---LG~g~~~~~s~~~~~~~P~~V~~~l~~~~Iv~IAcG-----~~HslaLT~dG 266 (1071)
....+.+++|+.|++|..-...--. .+.|. . ....+. ...+++|+.+.+- ....+++|.+|
T Consensus 544 ~t~d~LllfTs~Grv~~l~~~~IP~~~r~~~G~-------~---i~~ll~-L~~~E~Iv~~i~~~~~~~~~~lvliT~~G 612 (800)
T TIGR01063 544 STHDYLLFFTNRGKVYWLKVYQIPEASRTAKGK-------P---IVNLLP-LQPDERITAILSVKEFDDGLYLFFATKNG 612 (800)
T ss_pred cCCCeEEEEeCCCcEEEEEhhhCcCCCcCCCCc-------C---HHHhcc-CCCCCeEEEEEEeccCCCCCEEEEEeCCC
Confidence 3566788999999999983322111 11111 0 000111 1245667766652 23578889999
Q ss_pred cEEEEeCCCCCC---cCCCCCCCCCcceeeccCcccEEEEEE--cCCceeEEecCCcEEEEeCCCCCCcCCCCCCCCCcc
Q 001476 267 EVFTWGSNREGQ---LGYTSVDTQPTPRRVSSLKLKIIAVAA--ANKHTAVVSESGEVFTWGCNREGQLGYGTSNSASNY 341 (1071)
Q Consensus 267 ~VyswG~N~~GQ---LG~g~~~~~~~P~~V~~l~~~Iv~Vac--G~~HSlaLt~dG~VY~WG~N~~GQLG~g~~~~~~~~ 341 (1071)
.+.-.=.+.+-. .|.... .+.. +..++.+.. ...+.+++|++|++|.+-.+.--..|......
T Consensus 613 yiKRi~l~~~~~~~r~G~~ai-------klke-~D~lv~v~~~~~~d~lll~Ts~Gr~~r~~v~eIp~~gr~~~Gv---- 680 (800)
T TIGR01063 613 VVKKTSLTEFSNIRSNGIIAI-------KLDD-GDELISVRLTSGDDEVMLGSKNGKAVRFPEEDVRPMGRAARGV---- 680 (800)
T ss_pred EEEEEEhHHhhhhccCCcccc-------cCCC-CCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCCcCCCCCCe----
Confidence 877654333211 111000 0001 224444433 33467889999999998765444444322111
Q ss_pred cceeeeccCCCCEEEEEec--CCeEEEEeeCCcEEEEecC-CCC--CCCccceecccc--CCcEEEE--EeCCCcceEEe
Q 001476 342 TPRVVESLKGKDLVGVAAA--KYHTIVLGADGERVIVARN-LKK--SGSTPLKFHRKI--KLHVVSI--AAGMVHSTALT 412 (1071)
Q Consensus 342 ~P~~V~~l~~~~I~~IaaG--~~hTlaLt~dG~Vy~wG~n-~~~--~~~~P~~~~~~~--~~~I~~I--a~G~~hslaLt 412 (1071)
. .+..-.+..|+.+.+- ..+.+++|.+|.+...--. ... .....+....+. +..++.+ ..+....+++|
T Consensus 681 -~-~i~L~~~E~Vv~~~~v~~~~~ll~vT~~G~~Kr~~l~e~~~~~R~~kGv~~ikl~~~~d~lv~~~~v~~~~~v~liT 758 (800)
T TIGR01063 681 -R-GIKLKNEDFVVSLLVVSEESYLLIVTENGYGKRTSIEEYRETSRGGKGVKSIKITDRNGQVVGAIAVDDDDELMLIT 758 (800)
T ss_pred -e-cccCCCCCEEEEEEEeccccEEEEEecCCcEEEEEHHHccccCCCCcceEEEEccCCCCeEEEEEEecCCCeEEEEe
Confidence 0 1222245566666543 3357778888877665422 111 011111111111 1233332 22344577778
Q ss_pred cCCcEEEEeCC
Q 001476 413 EDGALFYWASS 423 (1071)
Q Consensus 413 ~dG~Vy~WG~n 423 (1071)
.+|.+..+-.+
T Consensus 759 ~~G~~lrf~~~ 769 (800)
T TIGR01063 759 SAGKLIRTSVQ 769 (800)
T ss_pred cCCeEEEeeHh
Confidence 88887766543
No 225
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=24.16 E-value=48 Score=39.43 Aligned_cols=136 Identities=13% Similarity=0.064 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHhhhHHHHHHHHHHcCCCccchhhhhccccCCCCCCCcCCccch
Q 001476 695 QEISKQVRALRKKLQQIEMLEVKLSNGHILDEQQIAKLQTKSVLERSLAELGVPIELPQAIAASAASPDGRGNKKAGVSK 774 (1071)
Q Consensus 695 ~~~~k~~r~l~kkl~~ie~l~~k~~~g~~l~~~q~~k~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 774 (1071)
...-...++|.-.+.-.|..+.-.+.--.--.+-++|++++-.-++|+..+ ..++.--.+.++++
T Consensus 357 e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~---------------l~knq~vw~~kl~~ 421 (493)
T KOG0804|consen 357 ELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKK---------------LIKNQDVWRGKLKE 421 (493)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHhhHHHHHHHHHH
Q ss_pred hhhhhhhhhhheeeccccccccccCcccccccccchhhhccccchhhhhccccccccccc-cccceecccCcccccccCC
Q 001476 775 KQKKKSKQKAAQVEAVSDFSVSEVGSNAAKDFFDTEITEVSKKKEEDAMSEGNVAIEYSK-QSGFLVQKKDNADSLKNNC 853 (1071)
Q Consensus 775 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 853 (1071)
.+.+.+....+ .|..+.|+.+-+. ++.-...+.+-.| +.+ -+|.-++....-...
T Consensus 422 ~~e~~~~~~~s------------------~d~~I~dLqEQlr-----Dlmf~le~qqklk~dt~-eIqegtI~~~~~s~~ 477 (493)
T KOG0804|consen 422 LEEREKEALGS------------------KDEKITDLQEQLR-----DLMFFLEAQQKLKSDTD-EIQEGTILITQISPS 477 (493)
T ss_pred HHHHHHHHHHH------------------HHHHHHHHHHHHH-----hHheehhhhhhhhcchh-hhcCceeeccCCCCC
Q ss_pred CCCcccccccccccCc
Q 001476 854 SPQTTSKKKNKNKKGG 869 (1071)
Q Consensus 854 ~~~~~~~~~~~~~~~~ 869 (1071)
++..+++||++|||+|
T Consensus 478 ~~~~~~~kkk~nrrk~ 493 (493)
T KOG0804|consen 478 SSSSVKSKKKSNRRKK 493 (493)
T ss_pred ccccccchhhhcccCC
No 226
>PF12017 Tnp_P_element: Transposase protein; InterPro: IPR021896 Protein in this family are transposases found in insects. This region is about 230 amino acids in length and is found associated with PF05485 from PFAM.
Probab=23.86 E-value=98 Score=34.31 Aligned_cols=37 Identities=32% Similarity=0.578 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHhhh
Q 001476 696 EISKQVRALRKKLQQIEMLEVKLSNGHILDEQQIAKLQT 734 (1071)
Q Consensus 696 ~~~k~~r~l~kkl~~ie~l~~k~~~g~~l~~~q~~k~~~ 734 (1071)
..+|+++.|+++|..++.|+..+ ...+..+||+.|..
T Consensus 29 ~le~~l~~Lk~~l~~~~~l~~~L--~~~Fs~~Qi~~lk~ 65 (236)
T PF12017_consen 29 RLEKELKKLKQKLEKYQKLENSL--KQIFSEDQIRNLKN 65 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHhCcHHHHHHHhc
Confidence 56666777777777777777655 45678888887754
No 227
>PTZ00421 coronin; Provisional
Probab=23.81 E-value=1.4e+03 Score=28.06 Aligned_cols=121 Identities=19% Similarity=0.096 Sum_probs=60.6
Q ss_pred eccCcccEEEEEEcC--C-ceeEEecCCcEEEEeCCCCCCcCCCCCCCCCcccceeeeccCCCCEEEEEecCC---eEEE
Q 001476 293 VSSLKLKIIAVAAAN--K-HTAVVSESGEVFTWGCNREGQLGYGTSNSASNYTPRVVESLKGKDLVGVAAAKY---HTIV 366 (1071)
Q Consensus 293 V~~l~~~Iv~VacG~--~-HSlaLt~dG~VY~WG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~I~~IaaG~~---hTla 366 (1071)
+.+-...|..|+... . .-+.-..||.|..|-.+..+.... ...|...-.-....|..|..... ..+.
T Consensus 71 l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~-------~~~~l~~L~gH~~~V~~l~f~P~~~~iLaS 143 (493)
T PTZ00421 71 LLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQN-------ISDPIVHLQGHTKKVGIVSFHPSAMNVLAS 143 (493)
T ss_pred EeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccc-------cCcceEEecCCCCcEEEEEeCcCCCCEEEE
Confidence 444445788888654 2 233356799999997654322100 11122111112345666666432 2333
Q ss_pred EeeCCcEEEEecCCCCCCCccceeccccCCcEEEEEeCCC--cceEEecCCcEEEEeCCC
Q 001476 367 LGADGERVIVARNLKKSGSTPLKFHRKIKLHVVSIAAGMV--HSTALTEDGALFYWASSD 424 (1071)
Q Consensus 367 Lt~dG~Vy~wG~n~~~~~~~P~~~~~~~~~~I~~Ia~G~~--hslaLt~dG~Vy~WG~n~ 424 (1071)
-..||.|..|--.... ...........|..|+.... ..+.-..||.|.+|--..
T Consensus 144 gs~DgtVrIWDl~tg~----~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rs 199 (493)
T PTZ00421 144 AGADMVVNVWDVERGK----AVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRD 199 (493)
T ss_pred EeCCCEEEEEECCCCe----EEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCC
Confidence 3568888888654221 11111111224666654433 333344688899997554
No 228
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=23.77 E-value=1.2e+03 Score=27.51 Aligned_cols=316 Identities=11% Similarity=0.062 Sum_probs=0.0
Q ss_pred eeccccccccceeeeccCCcccccCCCCcccccCCceeccCCCceEEEEecCCceEEEEecCCcEEEEecCCCCCCCCCC
Q 001476 145 VVGSGYNSVATEVFSWGSGANYQLGTGNAHLQKLPCKVDSLHGFVIKLISAAKFHSVAVTSLGEVYTWGYGRGGRLGHPD 224 (1071)
Q Consensus 145 a~~~~~~~~~g~VYsWGsN~~GQLG~G~~~~~~~P~~V~~l~~~~I~~Va~G~~HslaLT~dG~Vy~WG~N~~GQLG~g~ 224 (1071)
+....+....++||+......--|| .|.+|....++++.+|+-+.-=.-.+-++.+|.
T Consensus 7 V~D~~~~~~~~rv~viD~d~~k~lG----------------------mi~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~ 64 (342)
T PF06433_consen 7 VQDPVFFHMTSRVYVIDADSGKLLG----------------------MIDTGFLGNVALSPDGKTIYVAETFYSRGTRGE 64 (342)
T ss_dssp EEE-GGGGSSEEEEEEETTTTEEEE----------------------EEEEESSEEEEE-TTSSEEEEEEEEEEETTEEE
T ss_pred EECCccccccceEEEEECCCCcEEE----------------------EeecccCCceeECCCCCEEEEEEEEEecccccc
Q ss_pred C-----ccCCCCcceeeeeeeecCCCCCCEEEEEecCceEEEEEcCCc-EEEEeCCCCCCcCCCCCCCCCcceeeccCcc
Q 001476 225 F-----DIHSGQAAVITPRRVTSGLGSRRVKTIAAAKHHTVLATEGGE-VFTWGSNREGQLGYTSVDTQPTPRRVSSLKL 298 (1071)
Q Consensus 225 ~-----~~~s~~~~~~~P~~V~~~l~~~~Iv~IAcG~~HslaLT~dG~-VyswG~N~~GQLG~g~~~~~~~P~~V~~l~~ 298 (1071)
. -..........-..|+ .+-+..+.-..+.+.|+.||+ +|.+-..-.--.+.-+......-..|....
T Consensus 65 RtDvv~~~D~~TL~~~~EI~iP-----~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG- 138 (342)
T PF06433_consen 65 RTDVVEIWDTQTLSPTGEIEIP-----PKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG- 138 (342)
T ss_dssp EEEEEEEEETTTTEEEEEEEET-----TS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS-
T ss_pred ceeEEEEEecCcCcccceEecC-----CcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC-
Q ss_pred cEEEEEEcCCceeEEecCCcEEEEeCCCCCCcCCCCCCCCCcccceeeeccCCCCEEEEEe---cCCeEEEEeeCCcEEE
Q 001476 299 KIIAVAAANKHTAVVSESGEVFTWGCNREGQLGYGTSNSASNYTPRVVESLKGKDLVGVAA---AKYHTIVLGADGERVI 375 (1071)
Q Consensus 299 ~Iv~VacG~~HSlaLt~dG~VY~WG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~I~~Iaa---G~~hTlaLt~dG~Vy~ 375 (1071)
-.--.-.|..-...++.||.+........|+. ......+.......+..-.+ ...+.++++-+|.||.
T Consensus 139 C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~---------~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~ 209 (342)
T PF06433_consen 139 CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKE---------AQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYS 209 (342)
T ss_dssp EEEEEEEETTEEEEEETTSCEEEEEETSTSSE---------EEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEE
T ss_pred EEEEEecCCCceEEEecCCceEEEEECCCCCE---------eEeeccccCCCCcccccccceECCCCeEEEEecCCEEEE
Q ss_pred EecCCCCCCCcc----------ceeccccCCcEEEEEeCCCcceEEecCCcEEEEeCCCCCCceeeeeecCCceeEEEEe
Q 001476 376 VARNLKKSGSTP----------LKFHRKIKLHVVSIAAGMVHSTALTEDGALFYWASSDPDLRCQQLYSMCGRNVVSISA 445 (1071)
Q Consensus 376 wG~n~~~~~~~P----------~~~~~~~~~~I~~Ia~G~~hslaLt~dG~Vy~WG~n~~~~~p~~v~~l~g~~Vv~Iaa 445 (1071)
.--....-...+ -.-..+.+.++..+....++.++|-..|. -|...+++...-.+..-....|..|..
T Consensus 210 ~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~--~gsHKdpgteVWv~D~~t~krv~Ri~l 287 (342)
T PF06433_consen 210 ADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGG--EGSHKDPGTEVWVYDLKTHKRVARIPL 287 (342)
T ss_dssp EEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE----TT-TTS-EEEEEEEETTTTEEEEEEEE
T ss_pred EeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCC--CCCccCCceEEEEEECCCCeEEEEEeC
Q ss_pred CCcE-EEEEeeCCcEEEecCCCCCCCCCceEEecCcccEEEEEecCCeEEEEEeC
Q 001476 446 GKYW-TAAVTATGDVYMWDGKKSKDNPPLVTRLHGIKKATSVSVGETHLLIVGSL 499 (1071)
Q Consensus 446 G~~h-s~aLT~dG~Vy~WG~N~~~~~~~~p~~v~g~~~V~~Va~G~~HtlaL~s~ 499 (1071)
...- ++.++.+.+-+.++.+.........-...+...-+-=-.|..-+++++.+
T Consensus 288 ~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~lG~~~~l~~~~~ 342 (342)
T PF06433_consen 288 EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQLGETPTLILTMD 342 (342)
T ss_dssp EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE---SSS--EEEE--
T ss_pred CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhccCCCceEEEecC
No 229
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=23.67 E-value=2.1e+03 Score=29.88 Aligned_cols=76 Identities=18% Similarity=0.258 Sum_probs=46.1
Q ss_pred CCEEEEEecCce-EEEEE--cCCcEEEEeCCCCCCcCCC-CCCCCCcceeeccCcccEEEEE-EcCCceeEE-ecCCcEE
Q 001476 247 RRVKTIAAAKHH-TVLAT--EGGEVFTWGSNREGQLGYT-SVDTQPTPRRVSSLKLKIIAVA-AANKHTAVV-SESGEVF 320 (1071)
Q Consensus 247 ~~Iv~IAcG~~H-slaLT--~dG~VyswG~N~~GQLG~g-~~~~~~~P~~V~~l~~~Iv~Va-cG~~HSlaL-t~dG~VY 320 (1071)
..+.+++....| +++++ +||.|-.|-.-. -.|.+ ......+-.. .+.++..|. |++.+++|+ +.||.|-
T Consensus 1049 ~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k--~~~~~~s~rS~ltys~---~~sr~~~vt~~~~~~~~Av~t~DG~v~ 1123 (1431)
T KOG1240|consen 1049 SAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRK--LEGEGGSARSELTYSP---EGSRVEKVTMCGNGDQFAVSTKDGSVR 1123 (1431)
T ss_pred ccccceeecCCCCceEEEecCCceEEEeeehh--hhcCcceeeeeEEEec---cCCceEEEEeccCCCeEEEEcCCCeEE
Confidence 356688888888 77775 689999996543 12221 1111111111 223566654 677777766 7889998
Q ss_pred EEeCCCC
Q 001476 321 TWGCNRE 327 (1071)
Q Consensus 321 ~WG~N~~ 327 (1071)
..+-+.+
T Consensus 1124 ~~~id~~ 1130 (1431)
T KOG1240|consen 1124 VLRIDHY 1130 (1431)
T ss_pred EEEcccc
Confidence 8887654
No 230
>COG5420 Uncharacterized conserved small protein containing a coiled-coil domain [Function unknown]
Probab=22.96 E-value=3.8e+02 Score=23.64 Aligned_cols=52 Identities=31% Similarity=0.372 Sum_probs=39.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHhhhH--------HHHHHHHHHc
Q 001476 694 NQEISKQVRALRKKLQQIEMLEVKLSNGHILDEQQIAKLQTK--------SVLERSLAEL 745 (1071)
Q Consensus 694 ~~~~~k~~r~l~kkl~~ie~l~~k~~~g~~l~~~q~~k~~~~--------~~~~~~l~~l 745 (1071)
.++++||||.|+-|-.|..+==.-.+.|-..+=+||.-+..+ .+++.||+.|
T Consensus 8 l~eiqkKvrkLqsrAg~akm~LhDLAEgLP~~wtei~~VA~kt~~~yaeLD~~k~ELakl 67 (71)
T COG5420 8 LEEIQKKVRKLQSRAGQAKMELHDLAEGLPVKWTEIMAVAEKTFEAYAELDAAKRELAKL 67 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHhccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 468899999999998888777777788888888888877654 3455566554
No 231
>TIGR01061 parC_Gpos DNA topoisomerase IV, A subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=22.71 E-value=1.7e+03 Score=29.09 Aligned_cols=115 Identities=9% Similarity=0.105 Sum_probs=60.4
Q ss_pred EEcCCceeEEecCCcEEEEeCCCCCCcCCCCCCCCCcccceeeeccCCCCEEEEEecCC------eEEEEeeCCcEEEEe
Q 001476 304 AAANKHTAVVSESGEVFTWGCNREGQLGYGTSNSASNYTPRVVESLKGKDLVGVAAAKY------HTIVLGADGERVIVA 377 (1071)
Q Consensus 304 acG~~HSlaLt~dG~VY~WG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~I~~IaaG~~------hTlaLt~dG~Vy~wG 377 (1071)
+.+..+.+++|.+|.+|.+-...--..|..... ......+..-.+..|+.+.+-.. +.+++|++|.+...-
T Consensus 539 ~~~~d~IllfT~~Gkv~r~~~~eIp~~gr~a~G---v~Ivk~i~L~~~D~Iv~~~~v~~~~~~~~~ll~vT~~G~~KRt~ 615 (738)
T TIGR01061 539 ANTTDQILIFTSLGNIINIPVHKLADIRWKDLG---EHLSNKITFDENETIVFVGTMNEFDVDQPILVLASKLGMVKRIE 615 (738)
T ss_pred ecCCCEEEEEeCCCcEEEEEHHHCcCCCCCCCC---cChhhcccCCCCCeEEEEEEeccccCCCcEEEEEecCCeEEEeE
Confidence 344556788899999999876544443332211 11122233224556777665432 578889999766543
Q ss_pred cCC----C-CCCCccceeccccCCcEEE--EEeCCCcceEEecCCcEEEEeCC
Q 001476 378 RNL----K-KSGSTPLKFHRKIKLHVVS--IAAGMVHSTALTEDGALFYWASS 423 (1071)
Q Consensus 378 ~n~----~-~~~~~P~~~~~~~~~~I~~--Ia~G~~hslaLt~dG~Vy~WG~n 423 (1071)
-.. . ..+..-..+.. +..++. +..+..+.+++|.+|.+..+-.+
T Consensus 616 l~e~~~~r~~kGv~~ikLk~--~d~lV~a~~v~~~d~IlliT~~G~~iRf~~~ 666 (738)
T TIGR01061 616 LTELNIKRNSKATLCIKLKD--KDHLISAFLQQKDKLICLVSDLGYALVFHTN 666 (738)
T ss_pred HHHhccccCCCceEEEeccC--CCcEEEEEEeCCCCEEEEEECCCeEEEEEHH
Confidence 211 0 11111112111 122222 23355678888999988776543
No 232
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=22.56 E-value=3.6e+02 Score=31.60 Aligned_cols=19 Identities=11% Similarity=0.171 Sum_probs=13.4
Q ss_pred CcceEEecCCcEEEEeCCC
Q 001476 406 VHSTALTEDGALFYWASSD 424 (1071)
Q Consensus 406 ~hslaLt~dG~Vy~WG~n~ 424 (1071)
.|+++...+|.||++|...
T Consensus 131 ~~~~~~~~~~~IYv~GG~~ 149 (376)
T PRK14131 131 GHVAVSLHNGKAYITGGVN 149 (376)
T ss_pred ceEEEEeeCCEEEEECCCC
Confidence 3555554689999999753
No 233
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=22.46 E-value=1.8e+03 Score=28.72 Aligned_cols=117 Identities=17% Similarity=0.253 Sum_probs=53.7
Q ss_pred eEEEEEcCCcEEEEeCCCCCCcCCC------CC-CC--CCcceeec--cCcccEEEEEEcCCce-eEEecCCcEEE----
Q 001476 258 HTVLATEGGEVFTWGSNREGQLGYT------SV-DT--QPTPRRVS--SLKLKIIAVAAANKHT-AVVSESGEVFT---- 321 (1071)
Q Consensus 258 HslaLT~dG~VyswG~N~~GQLG~g------~~-~~--~~~P~~V~--~l~~~Iv~VacG~~HS-laLt~dG~VY~---- 321 (1071)
..++...+|.+|+|-.+...-+..+ .. .. ....+.+. .+...|.+|......+ ++|.-.-.|++
T Consensus 34 rNLl~~~d~~L~vWd~~e~~l~~~nlr~~~~~~~~~~~~~~q~L~~~~~~~f~v~~i~~n~~g~~lal~G~~~v~V~~LP 113 (717)
T PF10168_consen 34 RNLLACRDGDLFVWDSSECCLLTVNLRSLESDAEGPAKSSYQKLLPSNPPLFEVHQISLNPTGSLLALVGPRGVVVLELP 113 (717)
T ss_pred eeeEEEeCCEEEEEECCCCEEEEEeeccccccccCccccCcceeecCCCCceeEEEEEECCCCCEEEEEcCCcEEEEEec
Confidence 3445555789999977764433221 00 00 11111111 1123566766554433 33333333332
Q ss_pred --EeCCCCCCcCCCCCCCCCcccceeeecc---CCCCEEEEE-----ecCCeEEEEeeCCcEEEE
Q 001476 322 --WGCNREGQLGYGTSNSASNYTPRVVESL---KGKDLVGVA-----AAKYHTIVLGADGERVIV 376 (1071)
Q Consensus 322 --WG~N~~GQLG~g~~~~~~~~~P~~V~~l---~~~~I~~Ia-----aG~~hTlaLt~dG~Vy~w 376 (1071)
||.+.+-+-|-..... ...|.--..+ ....|.++. ..+.|-++||.|+.+..+
T Consensus 114 ~r~g~~~~~~~g~~~i~C--rt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y 176 (717)
T PF10168_consen 114 RRWGKNGEFEDGKKEINC--RTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLY 176 (717)
T ss_pred cccCccccccCCCcceeE--EEEEechhhccCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEE
Confidence 7766433333221111 1112111122 123566664 346899999999985443
No 234
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=21.80 E-value=2.2e+02 Score=34.29 Aligned_cols=47 Identities=23% Similarity=0.285 Sum_probs=35.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHhhhHHHHHH
Q 001476 694 NQEISKQVRALRKKLQQIEMLEVKLSNGHILDEQQIAKLQTKSVLER 740 (1071)
Q Consensus 694 ~~~~~k~~r~l~kkl~~ie~l~~k~~~g~~l~~~q~~k~~~~~~~~~ 740 (1071)
+.+.+|++|.-+++|-+|+++++-...-..++++++++=-++..+++
T Consensus 69 Eta~ekr~RlA~e~L~~i~e~~E~~~d~~~~~~e~va~rLked~le~ 115 (479)
T KOG0299|consen 69 ETAGEKRLRLAEEYLDEIREIEEDNFDADDLDDELVASRLKEDVLEQ 115 (479)
T ss_pred cchhHHHHHHHHHHHHHHHhhhhcccccchhhHHHHHHHHHHHHHHh
Confidence 56889999999999999987777444445677788877655555554
No 235
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=21.40 E-value=1.4e+03 Score=27.08 Aligned_cols=51 Identities=20% Similarity=0.304 Sum_probs=28.3
Q ss_pred cCCcEEEEeCCCCCCceeeeeecCCceeEEEE-eCCcEEEEEeeCCcEEEecCCC
Q 001476 413 EDGALFYWASSDPDLRCQQLYSMCGRNVVSIS-AGKYWTAAVTATGDVYMWDGKK 466 (1071)
Q Consensus 413 ~dG~Vy~WG~n~~~~~p~~v~~l~g~~Vv~Ia-aG~~hs~aLT~dG~Vy~WG~N~ 466 (1071)
-||+|-.|-.....++..-. .. ..|+++- -+....++-+.+|.|+.|....
T Consensus 306 vdG~i~iyD~a~~~~R~~c~--he-~~V~~l~w~~t~~l~t~c~~g~v~~wDaRt 357 (399)
T KOG0296|consen 306 VDGTIAIYDLAASTLRHICE--HE-DGVTKLKWLNTDYLLTACANGKVRQWDART 357 (399)
T ss_pred ccceEEEEecccchhheecc--CC-CceEEEEEcCcchheeeccCceEEeeeccc
Confidence 58899998876533322111 11 1244432 2233444567899999997543
No 236
>PLN00181 protein SPA1-RELATED; Provisional
Probab=21.36 E-value=1.9e+03 Score=28.52 Aligned_cols=179 Identities=18% Similarity=0.202 Sum_probs=83.9
Q ss_pred eEEEEEcCCcEEEEeCCCCCCcCCCCCCCCCcceeeccCcccEEEEEEcC-Cce--eEEecCCcEEEEeCCCCCCcCCCC
Q 001476 258 HTVLATEGGEVFTWGSNREGQLGYTSVDTQPTPRRVSSLKLKIIAVAAAN-KHT--AVVSESGEVFTWGCNREGQLGYGT 334 (1071)
Q Consensus 258 HslaLT~dG~VyswG~N~~GQLG~g~~~~~~~P~~V~~l~~~Iv~VacG~-~HS--laLt~dG~VY~WG~N~~GQLG~g~ 334 (1071)
..+.-..+|.|..|-... +++ -..+..-...|..|+.-. +.. +.-..||.|..|-.+..-.+
T Consensus 547 ~las~~~Dg~v~lWd~~~-~~~----------~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~---- 611 (793)
T PLN00181 547 QVASSNFEGVVQVWDVAR-SQL----------VTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSI---- 611 (793)
T ss_pred EEEEEeCCCeEEEEECCC-CeE----------EEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEE----
Confidence 334445689999995432 111 111122234577776642 222 23456889999965421111
Q ss_pred CCCCCcccceeeeccCCCCEEEEEe---cCCeEEEEeeCCcEEEEecCCCCCCCccceeccccCCcEEEEEeCC-CcceE
Q 001476 335 SNSASNYTPRVVESLKGKDLVGVAA---AKYHTIVLGADGERVIVARNLKKSGSTPLKFHRKIKLHVVSIAAGM-VHSTA 410 (1071)
Q Consensus 335 ~~~~~~~~P~~V~~l~~~~I~~Iaa---G~~hTlaLt~dG~Vy~wG~n~~~~~~~P~~~~~~~~~~I~~Ia~G~-~hsla 410 (1071)
..+.. ...|..+.. ...+.++-..||.|+.|-..... .+..........|..+..-. ...+.
T Consensus 612 ---------~~~~~--~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~---~~~~~~~~h~~~V~~v~f~~~~~lvs 677 (793)
T PLN00181 612 ---------GTIKT--KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPK---LPLCTMIGHSKTVSYVRFVDSSTLVS 677 (793)
T ss_pred ---------EEEec--CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCC---ccceEecCCCCCEEEEEEeCCCEEEE
Confidence 01111 113444432 12334444568888888653211 11111111122455554432 33344
Q ss_pred EecCCcEEEEeCCCCC--CceeeeeecCC----ceeEEEEeCCcEEEEEeeCCcEEEecCC
Q 001476 411 LTEDGALFYWASSDPD--LRCQQLYSMCG----RNVVSISAGKYWTAAVTATGDVYMWDGK 465 (1071)
Q Consensus 411 Lt~dG~Vy~WG~n~~~--~~p~~v~~l~g----~~Vv~IaaG~~hs~aLT~dG~Vy~WG~N 465 (1071)
...||.|..|-..... .....+..+.+ ...+.+.......+.-..||.|++|-.+
T Consensus 678 ~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~ 738 (793)
T PLN00181 678 SSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKA 738 (793)
T ss_pred EECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECC
Confidence 4578999999754321 11111222221 1233333334455556678999999754
No 237
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=21.19 E-value=1.5e+03 Score=27.48 Aligned_cols=143 Identities=12% Similarity=0.171 Sum_probs=0.0
Q ss_pred EecCCcEEEEecCCCCCCCCCCCccCCCCcceeeeeeeecCCCCCCEEEEEe-cC---ceEEEEEcCCcEEEEeCCCCCC
Q 001476 203 VTSLGEVYTWGYGRGGRLGHPDFDIHSGQAAVITPRRVTSGLGSRRVKTIAA-AK---HHTVLATEGGEVFTWGSNREGQ 278 (1071)
Q Consensus 203 LT~dG~Vy~WG~N~~GQLG~g~~~~~s~~~~~~~P~~V~~~l~~~~Iv~IAc-G~---~HslaLT~dG~VyswG~N~~GQ 278 (1071)
+-.+|+-+.|-+|+ ..+....+. .+..+..++. +. .+++++--||.+|+-|.- .|+
T Consensus 311 ~h~tgeYllsAs~d----------------~~w~Fsd~~---~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~-d~~ 370 (506)
T KOG0289|consen 311 LHPTGEYLLSASND----------------GTWAFSDIS---SGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTP-DGV 370 (506)
T ss_pred eccCCcEEEEecCC----------------ceEEEEEcc---CCcEEEEEeeccccceeEEeeEcCCceEEeccCC-Cce
Q ss_pred cCCCCCCCCCcceeeccCcccEEEEEEcCC--ceeEEecCCcEEEEeCCCCCCcCCCCCCCCCcccceeeeccCCCCEEE
Q 001476 279 LGYTSVDTQPTPRRVSSLKLKIIAVAAANK--HTAVVSESGEVFTWGCNREGQLGYGTSNSASNYTPRVVESLKGKDLVG 356 (1071)
Q Consensus 279 LG~g~~~~~~~P~~V~~l~~~Iv~VacG~~--HSlaLt~dG~VY~WG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~I~~ 356 (1071)
+-.-+......-...+.-..+|+.|+.+.+ +-+.-++||.|++| +......+.-..+....+.+-..
T Consensus 371 vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lw-----------DLRKl~n~kt~~l~~~~~v~s~~ 439 (506)
T KOG0289|consen 371 VKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLW-----------DLRKLKNFKTIQLDEKKEVNSLS 439 (506)
T ss_pred EEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEE-----------EehhhcccceeeccccccceeEE
Q ss_pred EEecCCeEEEEeeCCcEEEE
Q 001476 357 VAAAKYHTIVLGADGERVIV 376 (1071)
Q Consensus 357 IaaG~~hTlaLt~dG~Vy~w 376 (1071)
+--...+-.+-.++=+||.+
T Consensus 440 fD~SGt~L~~~g~~l~Vy~~ 459 (506)
T KOG0289|consen 440 FDQSGTYLGIAGSDLQVYIC 459 (506)
T ss_pred EcCCCCeEEeecceeEEEEE
No 238
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=21.17 E-value=1e+03 Score=25.52 Aligned_cols=134 Identities=17% Similarity=0.222 Sum_probs=59.8
Q ss_pred EEEEeeCCcEEEEecCCCCCCCcc-ceeccc-cCCcEEEEEeCC--CcceEEecCCc-EEEEeCCCCCCceeeeee----
Q 001476 364 TIVLGADGERVIVARNLKKSGSTP-LKFHRK-IKLHVVSIAAGM--VHSTALTEDGA-LFYWASSDPDLRCQQLYS---- 434 (1071)
Q Consensus 364 TlaLt~dG~Vy~wG~n~~~~~~~P-~~~~~~-~~~~I~~Ia~G~--~hslaLt~dG~-Vy~WG~n~~~~~p~~v~~---- 434 (1071)
-++++.+|.+|+--.......... -.+... ....+..+..+. .+.++++.+|+ +|+--+....+.--.+..
T Consensus 90 D~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~ 169 (246)
T PF08450_consen 90 DVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPDGKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGE 169 (246)
T ss_dssp EEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETTSEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCC
T ss_pred eEEEcCCCCEEEEecCCCccccccccceEEECCCCeEEEEecCcccccceEECCcchheeecccccceeEEEeccccccc
Confidence 356777888777654432222110 011111 112344444433 34678888886 454333332211111100
Q ss_pred cCC-ceeEEEEeC--CcEEEEEeeCCcEEEe--cCCC------CCCCCCceEEecCcccEEEEEec--CCeEEEEEeC
Q 001476 435 MCG-RNVVSISAG--KYWTAAVTATGDVYMW--DGKK------SKDNPPLVTRLHGIKKATSVSVG--ETHLLIVGSL 499 (1071)
Q Consensus 435 l~g-~~Vv~IaaG--~~hs~aLT~dG~Vy~W--G~N~------~~~~~~~p~~v~g~~~V~~Va~G--~~HtlaL~s~ 499 (1071)
+.. ..+..+..+ .--.++++.+|.||+- +.+. .+ ....-..++ ..+++.++.| ..++++|++.
T Consensus 170 ~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~G-~~~~~i~~p-~~~~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 170 LSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPDG-KLLREIELP-VPRPTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp EEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETTS-CEEEEEE-S-SSSEEEEEEESTTSSEEEEEEB
T ss_pred eeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCCc-cEEEEEcCC-CCCEEEEEEECCCCCEEEEEeC
Confidence 000 112223332 2456888999999975 4332 11 112223344 3478888886 4577877763
No 239
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=20.54 E-value=7.9e+02 Score=33.49 Aligned_cols=159 Identities=19% Similarity=0.215 Sum_probs=77.6
Q ss_pred ccEEEEEEcCCc-eeEE--ecCCcEEEEeCCCCCCcCCC-CCCCCCcccceeeeccCCCCEEEE-EecCCeEEEE-eeCC
Q 001476 298 LKIIAVAAANKH-TAVV--SESGEVFTWGCNREGQLGYG-TSNSASNYTPRVVESLKGKDLVGV-AAAKYHTIVL-GADG 371 (1071)
Q Consensus 298 ~~Iv~VacG~~H-SlaL--t~dG~VY~WG~N~~GQLG~g-~~~~~~~~~P~~V~~l~~~~I~~I-aaG~~hTlaL-t~dG 371 (1071)
..+.+++....| ++++ .+||.|-+|-.- --.|.+ ...+ ...-...+.++.++ .|+..+.+|+ ++||
T Consensus 1049 ~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~--k~~~~~~s~rS------~ltys~~~sr~~~vt~~~~~~~~Av~t~DG 1120 (1431)
T KOG1240|consen 1049 SAVIKLAVSSEHTSLFVSGSDDGTVKVWNLR--KLEGEGGSARS------ELTYSPEGSRVEKVTMCGNGDQFAVSTKDG 1120 (1431)
T ss_pred ccccceeecCCCCceEEEecCCceEEEeeeh--hhhcCcceeee------eEEEeccCCceEEEEeccCCCeEEEEcCCC
Confidence 356688888888 7776 579999999543 223332 1111 11112234455555 3455555444 6788
Q ss_pred cEEEEecCCCCCC-Ccc--ceeccc-cCCcEEEEEeC-----CCcceEEecCCcEEEEeCCCCCCceeeeeecCCceeEE
Q 001476 372 ERVIVARNLKKSG-STP--LKFHRK-IKLHVVSIAAG-----MVHSTALTEDGALFYWASSDPDLRCQQLYSMCGRNVVS 442 (1071)
Q Consensus 372 ~Vy~wG~n~~~~~-~~P--~~~~~~-~~~~I~~Ia~G-----~~hslaLt~dG~Vy~WG~n~~~~~p~~v~~l~g~~Vv~ 442 (1071)
.|-..+-+..... ... ..++.. ....++++-+- ..-.++.|..+.+..|+..........-..+...-|+.
T Consensus 1121 ~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTS 1200 (1431)
T KOG1240|consen 1121 SVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTS 1200 (1431)
T ss_pred eEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeE
Confidence 8776665432111 111 111111 11134443222 22345667888999998643110000001112223444
Q ss_pred EEe--CCcEEEEEeeCCcEEEecC
Q 001476 443 ISA--GKYWTAAVTATGDVYMWDG 464 (1071)
Q Consensus 443 Iaa--G~~hs~aLT~dG~Vy~WG~ 464 (1071)
|+. +..+.++=|+.|.+.+|..
T Consensus 1201 i~idp~~~WlviGts~G~l~lWDL 1224 (1431)
T KOG1240|consen 1201 IVIDPWCNWLVIGTSRGQLVLWDL 1224 (1431)
T ss_pred EEecCCceEEEEecCCceEEEEEe
Confidence 443 2334445567788888873
No 240
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=20.43 E-value=1.5e+03 Score=27.04 Aligned_cols=196 Identities=13% Similarity=0.145 Sum_probs=92.3
Q ss_pred eEEEEec-CCceEEEEecCCcEEEEecCCCCCCCCCCCccCCCCcceeeeeeee-cCCCCCCEEEEEecCceEEEEEcCC
Q 001476 189 VIKLISA-AKFHSVAVTSLGEVYTWGYGRGGRLGHPDFDIHSGQAAVITPRRVT-SGLGSRRVKTIAAAKHHTVLATEGG 266 (1071)
Q Consensus 189 ~I~~Va~-G~~HslaLT~dG~Vy~WG~N~~GQLG~g~~~~~s~~~~~~~P~~V~-~~l~~~~Iv~IAcG~~HslaLT~dG 266 (1071)
+|+.+.- -..+.++|+++|.++.+. ..|.. .+ ..+..+. ......+|-.+..+.+-.++||.++
T Consensus 82 ~iv~~~wt~~e~LvvV~~dG~v~vy~--~~G~~---~f---------sl~~~i~~~~v~e~~i~~~~~~~~GivvLt~~~ 147 (410)
T PF04841_consen 82 RIVGMGWTDDEELVVVQSDGTVRVYD--LFGEF---QF---------SLGEEIEEEKVLECRIFAIWFYKNGIVVLTGNN 147 (410)
T ss_pred CEEEEEECCCCeEEEEEcCCEEEEEe--CCCce---ee---------chhhhccccCcccccccccccCCCCEEEECCCC
Confidence 4555544 466888999999988873 33332 11 0111111 0111223444455666688999999
Q ss_pred cEEEEeCCCCCCcCCCCCCCCCcceeeccC---c--ccEEEEEEcCCceeE-EecCCcEEEEeCCCCCCcCCCCCCCCCc
Q 001476 267 EVFTWGSNREGQLGYTSVDTQPTPRRVSSL---K--LKIIAVAAANKHTAV-VSESGEVFTWGCNREGQLGYGTSNSASN 340 (1071)
Q Consensus 267 ~VyswG~N~~GQLG~g~~~~~~~P~~V~~l---~--~~Iv~VacG~~HSla-Lt~dG~VY~WG~N~~GQLG~g~~~~~~~ 340 (1071)
++|..=+... ..=.... ...|...... . ..+ ....+.....+ +..++.++.--.+...+
T Consensus 148 ~~~~v~n~~~-~~~~~~~--~~~p~~~~~~~~~~~~~~i-~~l~~~~~~~i~~~~g~~i~~i~~~~~~~----------- 212 (410)
T PF04841_consen 148 RFYVVNNIDE-PVKLRRL--PEIPGLWTKFHWWPSWTVI-PLLSSDRVVEILLANGETIYIIDENSFKQ----------- 212 (410)
T ss_pred eEEEEeCccc-cchhhcc--ccCCCcccccccccccccc-eEeecCcceEEEEecCCEEEEEEcccccc-----------
Confidence 9998733221 1000000 0112211111 0 112 12233333322 33344555443222211
Q ss_pred ccceeeeccCCCCEEEEEec--CCeEEEEeeCCcEEEEecCCCCCCCccceeccccCC-cEEEEEeCCCcceEEecCCcE
Q 001476 341 YTPRVVESLKGKDLVGVAAA--KYHTIVLGADGERVIVARNLKKSGSTPLKFHRKIKL-HVVSIAAGMVHSTALTEDGAL 417 (1071)
Q Consensus 341 ~~P~~V~~l~~~~I~~IaaG--~~hTlaLt~dG~Vy~wG~n~~~~~~~P~~~~~~~~~-~I~~Ia~G~~hslaLt~dG~V 417 (1071)
+. ...++.+|+.. ..+.++++.+|.+|..-...... -..+...... ...-..||.. ++++.-...|
T Consensus 213 -----i~--~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~---~~e~~~~~~~~p~~~~WCG~d-av~l~~~~~l 281 (410)
T PF04841_consen 213 -----ID--SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEK---LCEFDTDSKSPPKQMAWCGND-AVVLSWEDEL 281 (410)
T ss_pred -----cc--CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccce---eEEeecCcCCCCcEEEEECCC-cEEEEeCCEE
Confidence 11 12356676655 45777788899999876543321 1122211112 3333467774 5555546678
Q ss_pred EEEeCCC
Q 001476 418 FYWASSD 424 (1071)
Q Consensus 418 y~WG~n~ 424 (1071)
+..|...
T Consensus 282 ~lvg~~~ 288 (410)
T PF04841_consen 282 LLVGPDG 288 (410)
T ss_pred EEECCCC
Confidence 8777443
No 241
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=20.39 E-value=80 Score=37.57 Aligned_cols=49 Identities=14% Similarity=0.258 Sum_probs=28.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHhhhHHHHHHHHHHcCCCccc
Q 001476 695 QEISKQVRALRKKLQQIEMLEVKLSNGHILDEQQIAKLQTKSVLERSLAELGVPIEL 751 (1071)
Q Consensus 695 ~~~~k~~r~l~kkl~~ie~l~~k~~~g~~l~~~q~~k~~~~~~~~~~l~~l~~~~~~ 751 (1071)
.+.+.-+|-+...|..|-.++++...-..+ .+=..+.+.|-.|||=...
T Consensus 105 ~elad~LkPI~e~i~eI~~fkE~nRkS~~F--------NhLsav~e~i~algWVav~ 153 (480)
T KOG2675|consen 105 NELADLLKPINEEIGEINNFKEKNRKSPFF--------NHLSAVSESIPALGWVAVK 153 (480)
T ss_pred HHHHHHhhhHHHhhhHHhhhhhcccCchHH--------HHHHHHHhhcccceeEecC
Confidence 345555666666666666666655433332 3345677777778775443
No 242
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=20.02 E-value=1.3e+02 Score=28.99 Aligned_cols=15 Identities=27% Similarity=0.554 Sum_probs=11.1
Q ss_pred hHHHHHHHHHHHHHH
Q 001476 696 EISKQVRALRKKLQQ 710 (1071)
Q Consensus 696 ~~~k~~r~l~kkl~~ 710 (1071)
-...+|++|++||.+
T Consensus 69 ~EkEqL~~Lk~kl~~ 83 (100)
T PF04568_consen 69 KEKEQLKKLKEKLKE 83 (100)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 345678888888877
Done!