BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001477
(1071 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 76/268 (28%), Positives = 117/268 (43%), Gaps = 29/268 (10%)
Query: 414 CVWG----PDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLC 469
VWG PDG + A V L+ N G+L Q L H V +AF+ P+ Q
Sbjct: 182 SVWGVAFSPDGQTIASASDDKTVKLWNRN--GQLLQTLT--GHSSSVRGVAFS-PDGQ-T 235
Query: 470 IVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD 529
I + DDK +K+W+ G+ T GH + V V + Q I S + D +K W +
Sbjct: 236 IASASDDKTVKLWN-RNGQLLQTLTGHSSSVNGVA--FRPDGQTIASASDDKTVKLWNRN 292
Query: 530 -YLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK 588
L + + W +A+S DG + S K + WN G +T +G
Sbjct: 293 GQLLQTLTGHSSSVWG--VAFSPDGQTIASASDDKT----VKLWNR-NGQHLQTLTGHSS 345
Query: 589 RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPR-LRFNKEGSLL 647
GV F +A D+ +K W+ N +L T+ G +S R + F+ +G +
Sbjct: 346 SVWGVA-FSPDGQTIASASDDKTVKLWNR-NGQLLQTLT---GHSSSVRGVAFSPDGQTI 400
Query: 648 AVTTSDNGIKILANSDGVRLLRMLEGRA 675
A + D +K L N +G +LL+ L G +
Sbjct: 401 ASASDDKTVK-LWNRNG-QLLQTLTGHS 426
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 60/235 (25%), Positives = 105/235 (44%), Gaps = 21/235 (8%)
Query: 443 LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYS 502
+++ ++AH V +AF+ P+ Q I + DDK +K+W+ G+ T GH + V+
Sbjct: 6 VKERNRLEAHSSSVRGVAFS-PDGQ-TIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWG 62
Query: 503 VCPHHKESIQFIFSTAIDGKIKAWLYD--YLGSRVDYDAPGNWCTMMAYSADGTRLFSCG 560
V Q I S + D +K W + L + + + +A+S DG + S
Sbjct: 63 VA--FSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSS---VRGVAFSPDGQTIASAS 117
Query: 561 TSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM 620
K + WN G + +T +G GV F +A D+ +K W+ N
Sbjct: 118 DDKT----VKLWNR-NGQLLQTLTGHSSSVWGVA-FSPDGQTIASASDDKTVKLWNR-NG 170
Query: 621 NMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRA 675
+L T+ G + + F+ +G +A + D +K L N +G +LL+ L G +
Sbjct: 171 QLLQTL--TGHSSSVWGVAFSPDGQTIASASDDKTVK-LWNRNG-QLLQTLTGHS 221
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 85/209 (40%), Gaps = 20/209 (9%)
Query: 410 SVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLC 469
SV + PDG + A V L+ N G+L Q L H V +AF+ P+ Q
Sbjct: 387 SVRGVAFSPDGQTIASASDDKTVKLWNRN--GQLLQTLT--GHSSSVWGVAFS-PDDQ-T 440
Query: 470 IVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD 529
I + DDK +K+W+ G+ T GH + V V Q I S + D +K W +
Sbjct: 441 IASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVA--FSPDGQTIASASDDKTVKLWNRN 497
Query: 530 --YLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFR 587
L + + + +A+S DG + S K + WN G + +T +G
Sbjct: 498 GQLLQTLTGHSSS---VRGVAFSPDGQTIASASDDKT----VKLWNR-NGQLLQTLTGHS 549
Query: 588 KRSLGVVQFDTTRNRFLAAGDEFQIKFWD 616
GV F +A + +K W+
Sbjct: 550 SSVWGVA-FSPDGQTIASASSDKTVKLWN 577
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 55/113 (48%), Gaps = 4/113 (3%)
Query: 840 EESAACIALSKNDSYVMSASGGK-VSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIA 898
S +A S + + SAS K V L+N +++ + +AF P D IA
Sbjct: 467 SSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP-DGQTIA 524
Query: 899 IGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMW 951
+D +V+++N R ++ L GH + + G+AFSP + S+ +D + +W
Sbjct: 525 SASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLW 576
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 54/113 (47%), Gaps = 4/113 (3%)
Query: 840 EESAACIALSKNDSYVMSASGGK-VSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIA 898
S +A S + + SAS K V L+N +++ + +AF P D IA
Sbjct: 221 SSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVNGVAFRP-DGQTIA 278
Query: 899 IGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMW 951
+D +V+++N R ++ L GH + + G+AFSP + S+ D + +W
Sbjct: 279 SASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW 330
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 64/138 (46%), Gaps = 10/138 (7%)
Query: 840 EESAACIALSKNDSYVMSASGGK-VSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIA 898
S +A S + + SAS K V L+N +++ + +AF P D+ IA
Sbjct: 385 SSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSP-DDQTIA 442
Query: 899 IGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEK 958
+D +V+++N R ++ L GH + + G+AFSP + S+ D + +W+ +
Sbjct: 443 SASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN---- 497
Query: 959 LKSRFIQAPAGRQSPLVG 976
+ +Q G S + G
Sbjct: 498 --GQLLQTLTGHSSSVRG 513
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 65/144 (45%), Gaps = 10/144 (6%)
Query: 834 NESKPTEESAACIALSKNDSYVMSASGGK-VSLFNMMTFKVMTMFMSPPPAATFLAFHPQ 892
N + S +A S + + SAS K V L+N +++ + +AF P
Sbjct: 10 NRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSP- 67
Query: 893 DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 952
D IA +D +V+++N R ++ L GH + + G+AFSP + S+ D + +W+
Sbjct: 68 DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 126
Query: 953 IDKWEKLKSRFIQAPAGRQSPLVG 976
+ + +Q G S + G
Sbjct: 127 RN------GQLLQTLTGHSSSVWG 144
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 54/113 (47%), Gaps = 4/113 (3%)
Query: 840 EESAACIALSKNDSYVMSASGGK-VSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIA 898
S +A S + + SAS K V L+N +++ + +AF P D IA
Sbjct: 139 SSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSP-DGQTIA 196
Query: 899 IGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMW 951
+D +V+++N R ++ L GH + + G+AFSP + S+ D + +W
Sbjct: 197 SASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW 248
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 63/138 (45%), Gaps = 10/138 (7%)
Query: 840 EESAACIALSKNDSYVMSASGGK-VSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIA 898
S +A S + + SAS K V L+N + T+ + +AF P D IA
Sbjct: 303 SSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTL-TGHSSSVWGVAFSP-DGQTIA 360
Query: 899 IGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEK 958
+D +V+++N R ++ L GH + + G+AFSP + S+ D + +W+ +
Sbjct: 361 SASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN---- 415
Query: 959 LKSRFIQAPAGRQSPLVG 976
+ +Q G S + G
Sbjct: 416 --GQLLQTLTGHSSSVWG 431
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 56/266 (21%), Positives = 113/266 (42%), Gaps = 13/266 (4%)
Query: 410 SVNRCVWGPDGLMLGVAFSKHIVHLY-TYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQL 468
+V+ + P+G L + + ++ ++ Y+ G+ + I H G++D+A++ + L
Sbjct: 47 AVSSVKFSPNGEWLASSSADKLIKIWGAYD--GKFEK--TISGHKLGISDVAWSSDSNLL 102
Query: 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLY 528
V+ DDK +K+WDV +G+ T +GH V+ C + I S + D ++ W
Sbjct: 103 --VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIWDV 158
Query: 529 DYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK 588
A + + + ++ DG+ + S +S +G + W+ + G +T
Sbjct: 159 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTLIDDDN 214
Query: 589 RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLA 648
+ V+F LAA + +K WD L T F+ G
Sbjct: 215 PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI 274
Query: 649 VTTSDNGIKILANSDGVRLLRMLEGR 674
V+ S++ + + N +++ L+G
Sbjct: 275 VSGSEDNLVYIWNLQTKEIVQKLQGH 300
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 61/141 (43%), Gaps = 8/141 (5%)
Query: 819 QLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMF 877
++W SG + I++ P + + S N Y+++A+ + L++ K + +
Sbjct: 196 RIWDTASGQCLKTLIDDDNP---PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 252
Query: 878 MS--PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPT 935
F F I G ED+ V I+N++ E+ KL+GH + + A PT
Sbjct: 253 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT 312
Query: 936 LNALVSSGA--DAQLCMWSID 954
N + S+ D + +W D
Sbjct: 313 ENIIASAALENDKTIKLWKSD 333
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 74/155 (47%), Gaps = 12/155 (7%)
Query: 893 DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 952
D+N++ +D +++I++V + LKGH N + F+P N +VS D + +W
Sbjct: 98 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 157
Query: 953 IDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLL-VVHESQISVYDSKL-ECSRSW 1010
+ + LK+ PA P+ + V F+ D + ++ ++ ++D+ +C ++
Sbjct: 158 VKTGKCLKT----LPA-HSDPV---SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 209
Query: 1011 SPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFD 1045
D P+S +S +G + A D + ++D
Sbjct: 210 IDDDN--PPVSFVKFSPNGKYILAATLDNTLKLWD 242
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/222 (20%), Positives = 80/222 (36%), Gaps = 53/222 (23%)
Query: 451 AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKES 510
H V+ + F+ PN + + + DK+IK+W G+ + T GH+ + V
Sbjct: 43 GHTKAVSSVKFS-PNGEW-LASSSADKLIKIWGAYDGKFEKTISGHKLGISDV------- 93
Query: 511 IQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLV 570
A+S+D L S K L
Sbjct: 94 -------------------------------------AWSSDSNLLVSASDDKT----LK 112
Query: 571 EWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG 630
W+ S G +T G F+ N ++ + ++ WD+ L T+ A
Sbjct: 113 IWDVSSGKCLKTLKGHSNYVF-CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 171
Query: 631 GLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLE 672
P S + FN++GSL+ ++ D +I + G L +++
Sbjct: 172 D-PVSA-VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 211
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 80/175 (45%), Gaps = 28/175 (16%)
Query: 883 AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSS 942
A + + F P + +A D ++I+ + + + GH+ I+ +A+S N LVS+
Sbjct: 47 AVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 105
Query: 943 GADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQF---HNDQTHLLV--VHESQI 997
D L +W + + LK+ L G + F N Q++L+V + +
Sbjct: 106 SDDKTLKIWDVSSGKCLKT------------LKGHSNYVFCCNFNPQSNLIVSGSFDESV 153
Query: 998 SVYDSKL-ECSRSWSPKDALPA---PISSAIYSCDGLLVYAGFCDGAIGVFDAET 1048
++D K +C ++ LPA P+S+ ++ DG L+ + DG ++D +
Sbjct: 154 RIWDVKTGKCLKT------LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 202
Score = 33.9 bits (76), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 45/230 (19%), Positives = 84/230 (36%), Gaps = 56/230 (24%)
Query: 339 VVRTLNQGSN-VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKP----------- 386
++TL SN V +F+PQ +++ G+ + +W+V + + L P
Sbjct: 121 CLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 179
Query: 387 ---------------FKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHI 431
++WD AS L++D V+ + P+G + A +
Sbjct: 180 NRDGSLIVSSSYDGLCRIWD--TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 237
Query: 432 VHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCI------------VTCGDDKMI 479
+ L+ Y+ L+ + H N++ CI V+ +D ++
Sbjct: 238 LKLWDYSKGKCLKTYT--------------GHKNEKYCIFANFSVTGGKWIVSGSEDNLV 283
Query: 480 KVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD 529
+W++ +GH V S H E+I + D IK W D
Sbjct: 284 YIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 333
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 57.4 bits (137), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 56/266 (21%), Positives = 113/266 (42%), Gaps = 13/266 (4%)
Query: 410 SVNRCVWGPDGLMLGVAFSKHIVHLY-TYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQL 468
+V+ + P+G L + + ++ ++ Y+ G+ + I H G++D+A++ + L
Sbjct: 49 AVSSVKFSPNGEWLASSSADKLIKIWGAYD--GKFEK--TISGHKLGISDVAWSSDSNLL 104
Query: 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLY 528
V+ DDK +K+WDV +G+ T +GH V+ C + I S + D ++ W
Sbjct: 105 --VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIWDV 160
Query: 529 DYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK 588
A + + + ++ DG+ + S +S +G + W+ + G +T
Sbjct: 161 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTLIDDDN 216
Query: 589 RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLA 648
+ V+F LAA + +K WD L T F+ G
Sbjct: 217 PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI 276
Query: 649 VTTSDNGIKILANSDGVRLLRMLEGR 674
V+ S++ + + N +++ L+G
Sbjct: 277 VSGSEDNLVYIWNLQTKEIVQKLQGH 302
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 61/141 (43%), Gaps = 8/141 (5%)
Query: 819 QLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMF 877
++W SG + I++ P + + S N Y+++A+ + L++ K + +
Sbjct: 198 RIWDTASGQCLKTLIDDDNP---PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 254
Query: 878 MS--PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPT 935
F F I G ED+ V I+N++ E+ KL+GH + + A PT
Sbjct: 255 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT 314
Query: 936 LNALVSSGA--DAQLCMWSID 954
N + S+ D + +W D
Sbjct: 315 ENIIASAALENDKTIKLWKSD 335
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 74/155 (47%), Gaps = 12/155 (7%)
Query: 893 DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 952
D+N++ +D +++I++V + LKGH N + F+P N +VS D + +W
Sbjct: 100 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 159
Query: 953 IDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLL-VVHESQISVYDSKL-ECSRSW 1010
+ + LK+ PA P+ + V F+ D + ++ ++ ++D+ +C ++
Sbjct: 160 VKTGKCLKT----LPA-HSDPV---SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 211
Query: 1011 SPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFD 1045
D P+S +S +G + A D + ++D
Sbjct: 212 IDDDN--PPVSFVKFSPNGKYILAATLDNTLKLWD 244
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/222 (20%), Positives = 80/222 (36%), Gaps = 53/222 (23%)
Query: 451 AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKES 510
H V+ + F+ PN + + + DK+IK+W G+ + T GH+ + V
Sbjct: 45 GHTKAVSSVKFS-PNGEW-LASSSADKLIKIWGAYDGKFEKTISGHKLGISDV------- 95
Query: 511 IQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLV 570
A+S+D L S K L
Sbjct: 96 -------------------------------------AWSSDSNLLVSASDDKT----LK 114
Query: 571 EWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG 630
W+ S G +T G F+ N ++ + ++ WD+ L T+ A
Sbjct: 115 IWDVSSGKCLKTLKGHSNYVF-CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 173
Query: 631 GLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLE 672
P S + FN++GSL+ ++ D +I + G L +++
Sbjct: 174 D-PVSA-VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 213
Score = 38.9 bits (89), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 80/175 (45%), Gaps = 28/175 (16%)
Query: 883 AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSS 942
A + + F P + +A D ++I+ + + + GH+ I+ +A+S N LVS+
Sbjct: 49 AVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 107
Query: 943 GADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQF---HNDQTHLLV--VHESQI 997
D L +W + + LK+ L G + F N Q++L+V + +
Sbjct: 108 SDDKTLKIWDVSSGKCLKT------------LKGHSNYVFCCNFNPQSNLIVSGSFDESV 155
Query: 998 SVYDSKL-ECSRSWSPKDALPA---PISSAIYSCDGLLVYAGFCDGAIGVFDAET 1048
++D K +C ++ LPA P+S+ ++ DG L+ + DG ++D +
Sbjct: 156 RIWDVKTGKCLKT------LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 204
Score = 34.3 bits (77), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 45/230 (19%), Positives = 84/230 (36%), Gaps = 56/230 (24%)
Query: 339 VVRTLNQGSN-VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKP----------- 386
++TL SN V +F+PQ +++ G+ + +W+V + + L P
Sbjct: 123 CLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 181
Query: 387 ---------------FKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHI 431
++WD AS L++D V+ + P+G + A +
Sbjct: 182 NRDGSLIVSSSYDGLCRIWD--TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 239
Query: 432 VHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCI------------VTCGDDKMI 479
+ L+ Y+ L+ + H N++ CI V+ +D ++
Sbjct: 240 LKLWDYSKGKCLKTYT--------------GHKNEKYCIFANFSVTGGKWIVSGSEDNLV 285
Query: 480 KVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD 529
+W++ +GH V S H E+I + D IK W D
Sbjct: 286 YIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 335
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/226 (22%), Positives = 94/226 (41%), Gaps = 8/226 (3%)
Query: 449 IDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHK 508
I H G++D+A++ + L V+ DDK +K+WDV +G+ T +GH V+ C +
Sbjct: 78 ISGHKLGISDVAWSSDSNLL--VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFN 133
Query: 509 ESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESH 568
I S + D ++ W A + + + ++ DG+ + S +S +G
Sbjct: 134 PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCR 191
Query: 569 LVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA 628
+ W+ + G +T + V+F LAA + +K WD L T
Sbjct: 192 I--WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG 249
Query: 629 DGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGR 674
F+ G V+ S++ + + N +++ L+G
Sbjct: 250 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 295
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 61/141 (43%), Gaps = 8/141 (5%)
Query: 819 QLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMF 877
++W SG + I++ P + + S N Y+++A+ + L++ K + +
Sbjct: 191 RIWDTASGQCLKTLIDDDNP---PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 247
Query: 878 MS--PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPT 935
F F I G ED+ V I+N++ E+ KL+GH + + A PT
Sbjct: 248 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT 307
Query: 936 LNALVSSGA--DAQLCMWSID 954
N + S+ D + +W D
Sbjct: 308 ENIIASAALENDKTIKLWKSD 328
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 74/155 (47%), Gaps = 12/155 (7%)
Query: 893 DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 952
D+N++ +D +++I++V + LKGH N + F+P N +VS D + +W
Sbjct: 93 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 152
Query: 953 IDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLL-VVHESQISVYDSKL-ECSRSW 1010
+ + LK+ PA P+ + V F+ D + ++ ++ ++D+ +C ++
Sbjct: 153 VKTGKCLKT----LPA-HSDPV---SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 204
Query: 1011 SPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFD 1045
D P+S +S +G + A D + ++D
Sbjct: 205 IDDD--NPPVSFVKFSPNGKYILAATLDNTLKLWD 237
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 45/222 (20%), Positives = 80/222 (36%), Gaps = 53/222 (23%)
Query: 451 AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKES 510
H V+ + F+ PN + + + DK+IK+W G+ + T GH+ + V
Sbjct: 38 GHTKAVSSVKFS-PNGEW-LASSSADKLIKIWGAYDGKFEKTISGHKLGISDV------- 88
Query: 511 IQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLV 570
A+S+D L S K L
Sbjct: 89 -------------------------------------AWSSDSNLLVSASDDKT----LK 107
Query: 571 EWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG 630
W+ S G +T G F+ N ++ + ++ WD+ L T+ A
Sbjct: 108 IWDVSSGKCLKTLKGHSNYVF-CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 166
Query: 631 GLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLE 672
P S + FN++GSL+ ++ D +I + G L +++
Sbjct: 167 D-PVSA-VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 206
Score = 38.5 bits (88), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 80/175 (45%), Gaps = 28/175 (16%)
Query: 883 AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSS 942
A + + F P + +A D ++I+ + + + GH+ I+ +A+S N LVS+
Sbjct: 42 AVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 100
Query: 943 GADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQF---HNDQTHLLV--VHESQI 997
D L +W + + LK+ L G + F N Q++L+V + +
Sbjct: 101 SDDKTLKIWDVSSGKCLKT------------LKGHSNYVFCCNFNPQSNLIVSGSFDESV 148
Query: 998 SVYDSKL-ECSRSWSPKDALPA---PISSAIYSCDGLLVYAGFCDGAIGVFDAET 1048
++D K +C ++ LPA P+S+ ++ DG L+ + DG ++D +
Sbjct: 149 RIWDVKTGKCLKT------LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 197
Score = 33.1 bits (74), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 48/232 (20%), Positives = 87/232 (37%), Gaps = 60/232 (25%)
Query: 339 VVRTLNQGSN-VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKP----------- 386
++TL SN V +F+PQ +++ G+ + +W+V + + L P
Sbjct: 116 CLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 174
Query: 387 ---------------FKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHI 431
++WD AS L++D V+ + P+G + A +
Sbjct: 175 NRDGSLIVSSSYDGLCRIWD--TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 232
Query: 432 VHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCI------------VTCGDDKMI 479
+ L+ Y+ L+ + H N++ CI V+ +D ++
Sbjct: 233 LKLWDYSKGKCLKTYT--------------GHKNEKYCIFANFSVTGGKWIVSGSEDNLV 278
Query: 480 KVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI--DGKIKAWLYD 529
+W++ +GH V S H E+I I S A+ D IK W D
Sbjct: 279 YIWNLQTKEIVQKLQGHTDVVISTACHPTENI--IASAALENDKTIKLWKSD 328
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/213 (22%), Positives = 89/213 (41%), Gaps = 29/213 (13%)
Query: 447 LEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPH 506
L++ H GGV + +AH +V+ D+ ++VWD+ G + FEGH + V +
Sbjct: 156 LQLSGHDGGVWALKYAHGG---ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIV 212
Query: 507 HKESIQFIFSTAIDGKIKAWLYDYLGSRVD----YDAP-----------------GNWCT 545
++I++I + + D + W S D +D P G+ +
Sbjct: 213 EYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMAS 272
Query: 546 MMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLA 605
+ S G + S ++ L+ W+ ++ SG R + +D R R ++
Sbjct: 273 VRTVSGHGNIV----VSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTI-YDHERKRCIS 327
Query: 606 AGDEFQIKFWDMDNMNMLTTVDADGGLPASPRL 638
A + I+ WD++N ++ T+ L RL
Sbjct: 328 ASMDTTIRIWDLENGELMYTLQGHTALVGLLRL 360
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 449 IDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHK 508
+ H + + H K+ CI + D I++WD+ G YT +GH A V + +
Sbjct: 306 LSGHTDRIYSTIYDHERKR-CI-SASMDTTIRIWDLENGELMYTLQGHTALVGLL----R 359
Query: 509 ESIQFIFSTAIDGKIKAW 526
S +F+ S A DG I+ W
Sbjct: 360 LSDKFLVSAAADGSIRGW 377
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/258 (21%), Positives = 109/258 (42%), Gaps = 13/258 (5%)
Query: 418 PDGLMLGVAFSKHIVHLY-TYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD 476
P+G L + + ++ ++ Y+ G+ + I H G++D+A++ + L V+ DD
Sbjct: 36 PNGEWLASSSADKLIKIWGAYD--GKFEK--TISGHKLGISDVAWSSDSNLL--VSASDD 89
Query: 477 KMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD 536
K +K+WDV +G+ T +GH V+ C + I S + D ++ W
Sbjct: 90 KTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKT 147
Query: 537 YDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQF 596
A + + + ++ DG+ + S +S +G + W+ + G +T + V+F
Sbjct: 148 LPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTLIDDDNPPVSFVKF 203
Query: 597 DTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGI 656
LAA + +K WD L T F+ G V+ S++ +
Sbjct: 204 SPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNM 263
Query: 657 KILANSDGVRLLRMLEGR 674
+ N +++ L+G
Sbjct: 264 VYIWNLQTKEIVQKLQGH 281
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 61/141 (43%), Gaps = 8/141 (5%)
Query: 819 QLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMF 877
++W SG + I++ P + + S N Y+++A+ + L++ K + +
Sbjct: 177 RIWDTASGQCLKTLIDDDNP---PVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTY 233
Query: 878 MS--PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPT 935
F F I G ED+ V I+N++ E+ KL+GH + + A PT
Sbjct: 234 TGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPT 293
Query: 936 LNALVSSGA--DAQLCMWSID 954
N + S+ D + +W D
Sbjct: 294 ENIIASAALENDKTIKLWKSD 314
Score = 39.3 bits (90), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 33/61 (54%)
Query: 893 DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 952
D+N++ +D +++I++V + LKGH N + F+P N +VS D + +W
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 138
Query: 953 I 953
+
Sbjct: 139 V 139
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 47/236 (19%), Positives = 89/236 (37%), Gaps = 27/236 (11%)
Query: 451 AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKES 510
H V+ + F+ PN + + + DK+IK+W G+ + T GH+ + V +
Sbjct: 24 GHTKAVSSVKFS-PNGEW-LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 511 IQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCG--------TS 562
+ + S + D +K W D C + +F C S
Sbjct: 82 L--LVSASDDKTLKIW-----------DVSSGKC-LKTLKGHSNYVFCCNFNPQSNLIVS 127
Query: 563 KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM 622
+ + W+ G +T + V F+ + +++ + + WD +
Sbjct: 128 GSFDESVRIWDVKTGMCLKTLPA-HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 186
Query: 623 LTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDK 678
L T+ D P S ++F+ G + T DN +K+ S G + L+ G +K
Sbjct: 187 LKTLIDDDNPPVS-FVKFSPNGKYILAATLDNDLKLWDYSKG-KCLKTYTGHKNEK 240
Score = 38.5 bits (88), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 82/187 (43%), Gaps = 28/187 (14%)
Query: 871 FKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGL 930
+ +M A + + F P + +A D ++I+ + + + GH+ I+ +
Sbjct: 16 YALMFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 74
Query: 931 AFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQF---HNDQT 987
A+S N LVS+ D L +W + + LK+ L G + F N Q+
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKT------------LKGHSNYVFCCNFNPQS 122
Query: 988 HLLV--VHESQISVYDSKLE-CSRSWSPKDALPA---PISSAIYSCDGLLVYAGFCDGAI 1041
+L+V + + ++D K C ++ LPA P+S+ ++ DG L+ + DG
Sbjct: 123 NLIVSGSFDESVRIWDVKTGMCLKT------LPAHSDPVSAVHFNRDGSLIVSSSYDGLC 176
Query: 1042 GVFDAET 1048
++D +
Sbjct: 177 RIWDTAS 183
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 49/232 (21%), Positives = 86/232 (37%), Gaps = 60/232 (25%)
Query: 339 VVRTLNQGSN-VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKP----------- 386
++TL SN V +F+PQ +++ G+ + +W+V + L P
Sbjct: 102 CLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHF 160
Query: 387 ---------------FKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHI 431
++WD AS L++D V+ + P+G + A +
Sbjct: 161 NRDGSLIVSSSYDGLCRIWD--TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDND 218
Query: 432 VHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCI------------VTCGDDKMI 479
+ L+ Y+ L+ + H N++ CI V+ +D M+
Sbjct: 219 LKLWDYSKGKCLKTYT--------------GHKNEKYCIFANFSVTGGKWIVSGSEDNMV 264
Query: 480 KVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI--DGKIKAWLYD 529
+W++ +GH V S H E+I I S A+ D IK W D
Sbjct: 265 YIWNLQTKEIVQKLQGHTDVVISTACHPTENI--IASAALENDKTIKLWKSD 314
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/226 (22%), Positives = 94/226 (41%), Gaps = 8/226 (3%)
Query: 449 IDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHK 508
I H G++D+A++ + L V+ DDK +K+WDV +G+ T +GH V+ C +
Sbjct: 64 ISGHKLGISDVAWSSDSNLL--VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFN 119
Query: 509 ESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESH 568
I S + D ++ W A + + + ++ DG+ + S +S +G
Sbjct: 120 PQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCR 177
Query: 569 LVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA 628
+ W+ + G +T + V+F LAA + +K WD L T
Sbjct: 178 I--WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG 235
Query: 629 DGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGR 674
F+ G V+ S++ + + N +++ L+G
Sbjct: 236 HKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGH 281
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 61/141 (43%), Gaps = 8/141 (5%)
Query: 819 QLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMF 877
++W SG + I++ P + + S N Y+++A+ + L++ K + +
Sbjct: 177 RIWDTASGQCLKTLIDDDNP---PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 233
Query: 878 MS--PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPT 935
F F I G ED+ V I+N++ E+ KL+GH + + A PT
Sbjct: 234 TGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPT 293
Query: 936 LNALVSSGA--DAQLCMWSID 954
N + S+ D + +W D
Sbjct: 294 ENIIASAALENDKTIKLWKSD 314
Score = 39.3 bits (90), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 33/62 (53%)
Query: 892 QDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMW 951
D+N++ +D +++I++V + LKGH N + F+P N +VS D + +W
Sbjct: 78 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 137
Query: 952 SI 953
+
Sbjct: 138 DV 139
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 45/222 (20%), Positives = 80/222 (36%), Gaps = 53/222 (23%)
Query: 451 AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKES 510
H V+ + F+ PN + + + DK+IK+W G+ + T GH+ + V
Sbjct: 24 GHTKAVSSVKFS-PNGEW-LASSSADKLIKIWGAYDGKFEKTISGHKLGISDV------- 74
Query: 511 IQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLV 570
A+S+D L S K L
Sbjct: 75 -------------------------------------AWSSDSNLLVSASDDKT----LK 93
Query: 571 EWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG 630
W+ S G +T G F+ N ++ + ++ WD+ L T+ A
Sbjct: 94 IWDVSSGKCLKTLKGHSNYVF-CCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHS 152
Query: 631 GLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLE 672
P S + FN++GSL+ ++ D +I + G L +++
Sbjct: 153 D-PVSA-VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 192
Score = 38.5 bits (88), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 82/187 (43%), Gaps = 28/187 (14%)
Query: 871 FKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGL 930
+ +M A + + F P + +A D ++I+ + + + GH+ I+ +
Sbjct: 16 YALMFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 74
Query: 931 AFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQF---HNDQT 987
A+S N LVS+ D L +W + + LK+ L G + F N Q+
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKT------------LKGHSNYVFCCNFNPQS 122
Query: 988 HLLV--VHESQISVYDSKLE-CSRSWSPKDALPA---PISSAIYSCDGLLVYAGFCDGAI 1041
+L+V + + ++D K C ++ LPA P+S+ ++ DG L+ + DG
Sbjct: 123 NLIVSGSFDESVRIWDVKTGMCLKT------LPAHSDPVSAVHFNRDGSLIVSSSYDGLC 176
Query: 1042 GVFDAET 1048
++D +
Sbjct: 177 RIWDTAS 183
Score = 33.5 bits (75), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 49/232 (21%), Positives = 86/232 (37%), Gaps = 60/232 (25%)
Query: 339 VVRTLNQGSN-VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKP----------- 386
++TL SN V +F+PQ +++ G+ + +W+V + L P
Sbjct: 102 CLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHF 160
Query: 387 ---------------FKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHI 431
++WD AS L++D V+ + P+G + A +
Sbjct: 161 NRDGSLIVSSSYDGLCRIWD--TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 218
Query: 432 VHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCI------------VTCGDDKMI 479
+ L+ Y+ L+ + H N++ CI V+ +D M+
Sbjct: 219 LKLWDYSKGKCLKTYT--------------GHKNEKYCIFANFSVTGGKWIVSGSEDNMV 264
Query: 480 KVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI--DGKIKAWLYD 529
+W++ +GH V S H E+I I S A+ D IK W D
Sbjct: 265 YIWNLQTKEIVQKLQGHTDVVISTACHPTENI--IASAALENDKTIKLWKSD 314
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/213 (22%), Positives = 88/213 (41%), Gaps = 29/213 (13%)
Query: 447 LEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPH 506
L++ H GGV + +AH +V+ D+ ++VWD+ G + FEGH + V +
Sbjct: 156 LQLSGHDGGVWALKYAHGG---ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIV 212
Query: 507 HKESIQFIFSTAIDGKIKAWLYDYLGSRVD----YDAP-----------------GNWCT 545
++I++I + + D + W S D +D P G+ +
Sbjct: 213 EYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXAS 272
Query: 546 MMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLA 605
+ S G + S ++ L+ W+ ++ SG R + +D R R ++
Sbjct: 273 VRTVSGHGNIV----VSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTI-YDHERKRCIS 327
Query: 606 AGDEFQIKFWDMDNMNMLTTVDADGGLPASPRL 638
A + I+ WD++N + T+ L RL
Sbjct: 328 ASXDTTIRIWDLENGELXYTLQGHTALVGLLRL 360
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 449 IDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHK 508
+ H + + H K+ CI + D I++WD+ G YT +GH A V + +
Sbjct: 306 LSGHTDRIYSTIYDHERKR-CI-SASXDTTIRIWDLENGELXYTLQGHTALVGLL----R 359
Query: 509 ESIQFIFSTAIDGKIKAW 526
S +F+ S A DG I+ W
Sbjct: 360 LSDKFLVSAAADGSIRGW 377
Score = 29.6 bits (65), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 14/63 (22%), Positives = 30/63 (47%)
Query: 895 NIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSID 954
NI+ G D+++ +++V + L GH +RI + +S+ D + +W ++
Sbjct: 281 NIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLE 340
Query: 955 KWE 957
E
Sbjct: 341 NGE 343
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/258 (21%), Positives = 109/258 (42%), Gaps = 13/258 (5%)
Query: 418 PDGLMLGVAFSKHIVHLY-TYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD 476
P+G L + + ++ ++ Y+ G+ + I H G++D+A++ + L V+ DD
Sbjct: 36 PNGEWLAASSADKLIKIWGAYD--GKFEK--TISGHKLGISDVAWSSDSNLL--VSASDD 89
Query: 477 KMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD 536
K +K+WDV +G+ T +GH V+ C + I S + D ++ W
Sbjct: 90 KTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKT 147
Query: 537 YDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQF 596
A + + + ++ DG+ + S +S +G + W+ + G +T + V+F
Sbjct: 148 LPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTLIDDDNPPVSFVKF 203
Query: 597 DTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGI 656
LAA + +K WD L T F+ G V+ S++ +
Sbjct: 204 SPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNL 263
Query: 657 KILANSDGVRLLRMLEGR 674
+ N +++ L+G
Sbjct: 264 VYIWNLQTKEIVQKLQGH 281
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 61/141 (43%), Gaps = 8/141 (5%)
Query: 819 QLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMF 877
++W SG + I++ P + + S N Y+++A+ + L++ K + +
Sbjct: 177 RIWDTASGQCLKTLIDDDNP---PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 233
Query: 878 MS--PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPT 935
F F I G ED+ V I+N++ E+ KL+GH + + A PT
Sbjct: 234 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT 293
Query: 936 LNALVSSGA--DAQLCMWSID 954
N + S+ D + +W D
Sbjct: 294 ENIIASAALENDKTIKLWKSD 314
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 37/69 (53%)
Query: 893 DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 952
D+N++ +D +++I++V + LKGH N + F+P N +VS D + +W
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 138
Query: 953 IDKWEKLKS 961
+ + LK+
Sbjct: 139 VKTGKCLKT 147
Score = 38.9 bits (89), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 86/197 (43%), Gaps = 28/197 (14%)
Query: 861 GKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKL 920
G+ S F + + A + + F P + +A D ++I+ + + +
Sbjct: 6 GRGSEFVKPNYALKFTLAGHTKAVSSVKFSP-NGEWLAASSADKLIKIWGAYDGKFEKTI 64
Query: 921 KGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKV 980
GH+ I+ +A+S N LVS+ D L +W + + LK+ L G +
Sbjct: 65 SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT------------LKGHSNY 112
Query: 981 QF---HNDQTHLLV--VHESQISVYDSKL-ECSRSWSPKDALPA---PISSAIYSCDGLL 1031
F N Q++L+V + + ++D K +C ++ LPA P+S+ ++ DG L
Sbjct: 113 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKT------LPAHSDPVSAVHFNRDGSL 166
Query: 1032 VYAGFCDGAIGVFDAET 1048
+ + DG ++D +
Sbjct: 167 IVSSSYDGLCRIWDTAS 183
Score = 38.1 bits (87), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 45/222 (20%), Positives = 79/222 (35%), Gaps = 53/222 (23%)
Query: 451 AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKES 510
H V+ + F+ PN + + DK+IK+W G+ + T GH+ + V
Sbjct: 24 GHTKAVSSVKFS-PNGEW-LAASSADKLIKIWGAYDGKFEKTISGHKLGISDV------- 74
Query: 511 IQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLV 570
A+S+D L S K L
Sbjct: 75 -------------------------------------AWSSDSNLLVSASDDKT----LK 93
Query: 571 EWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG 630
W+ S G +T G F+ N ++ + ++ WD+ L T+ A
Sbjct: 94 IWDVSSGKCLKTLKGHSNYVF-CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 152
Query: 631 GLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLE 672
P S + FN++GSL+ ++ D +I + G L +++
Sbjct: 153 D-PVSA-VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 192
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 48/232 (20%), Positives = 87/232 (37%), Gaps = 60/232 (25%)
Query: 339 VVRTLNQGSN-VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKP----------- 386
++TL SN V +F+PQ +++ G+ + +W+V + + L P
Sbjct: 102 CLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 160
Query: 387 ---------------FKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHI 431
++WD AS L++D V+ + P+G + A +
Sbjct: 161 NRDGSLIVSSSYDGLCRIWD--TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 218
Query: 432 VHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCI------------VTCGDDKMI 479
+ L+ Y+ L+ + H N++ CI V+ +D ++
Sbjct: 219 LKLWDYSKGKCLKTYT--------------GHKNEKYCIFANFSVTGGKWIVSGSEDNLV 264
Query: 480 KVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI--DGKIKAWLYD 529
+W++ +GH V S H E+I I S A+ D IK W D
Sbjct: 265 YIWNLQTKEIVQKLQGHTDVVISTACHPTENI--IASAALENDKTIKLWKSD 314
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/226 (22%), Positives = 94/226 (41%), Gaps = 8/226 (3%)
Query: 449 IDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHK 508
I H G++D+A++ + L V+ DDK +K+WDV +G+ T +GH V+ C +
Sbjct: 64 ISGHKLGISDVAWSSDSNLL--VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFN 119
Query: 509 ESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESH 568
I S + D ++ W A + + + ++ DG+ + S +S +G
Sbjct: 120 PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCR 177
Query: 569 LVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA 628
+ W+ + G +T + V+F LAA + +K WD L T
Sbjct: 178 I--WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG 235
Query: 629 DGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGR 674
F+ G V+ S++ + + N +++ L+G
Sbjct: 236 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 281
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 56/127 (44%), Gaps = 6/127 (4%)
Query: 819 QLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMF 877
++W SG + I++ P + + S N Y+++A+ + L++ K + +
Sbjct: 177 RIWDTASGQCLKTLIDDDNP---PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 233
Query: 878 MS--PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPT 935
F F I G ED+ V I+N++ E+ KL+GH + + A PT
Sbjct: 234 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT 293
Query: 936 LNALVSS 942
N + S+
Sbjct: 294 ENIIASA 300
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 37/69 (53%)
Query: 893 DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 952
D+N++ +D +++I++V + LKGH N + F+P N +VS D + +W
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 138
Query: 953 IDKWEKLKS 961
+ + LK+
Sbjct: 139 VKTGKCLKT 147
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 45/222 (20%), Positives = 80/222 (36%), Gaps = 53/222 (23%)
Query: 451 AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKES 510
H V+ + F+ PN + + + DK+IK+W G+ + T GH+ + V
Sbjct: 24 GHTKAVSSVKFS-PNGEW-LASSSADKLIKIWGAYDGKFEKTISGHKLGISDV------- 74
Query: 511 IQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLV 570
A+S+D L S K L
Sbjct: 75 -------------------------------------AWSSDSNLLVSASDDKT----LK 93
Query: 571 EWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG 630
W+ S G +T G F+ N ++ + ++ WD+ L T+ A
Sbjct: 94 IWDVSSGKCLKTLKGHSNYVF-CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 152
Query: 631 GLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLE 672
P S + FN++GSL+ ++ D +I + G L +++
Sbjct: 153 D-PVSA-VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 192
Score = 38.5 bits (88), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 86/197 (43%), Gaps = 28/197 (14%)
Query: 861 GKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKL 920
G+ S F + + A + + F P + +A D ++I+ + + +
Sbjct: 6 GRGSEFVKPNYALKFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTI 64
Query: 921 KGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKV 980
GH+ I+ +A+S N LVS+ D L +W + + LK+ L G +
Sbjct: 65 SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT------------LKGHSNY 112
Query: 981 QF---HNDQTHLLV--VHESQISVYDSKL-ECSRSWSPKDALPA---PISSAIYSCDGLL 1031
F N Q++L+V + + ++D K +C ++ LPA P+S+ ++ DG L
Sbjct: 113 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKT------LPAHSDPVSAVHFNRDGSL 166
Query: 1032 VYAGFCDGAIGVFDAET 1048
+ + DG ++D +
Sbjct: 167 IVSSSYDGLCRIWDTAS 183
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/226 (22%), Positives = 94/226 (41%), Gaps = 8/226 (3%)
Query: 449 IDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHK 508
I H G++D+A++ + L V+ DDK +K+WDV +G+ T +GH V+ C +
Sbjct: 64 ISGHKLGISDVAWSSDSNLL--VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFN 119
Query: 509 ESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESH 568
I S + D ++ W A + + + ++ DG+ + S +S +G
Sbjct: 120 PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCR 177
Query: 569 LVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA 628
+ W+ + G +T + V+F LAA + +K WD L T
Sbjct: 178 I--WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG 235
Query: 629 DGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGR 674
F+ G V+ S++ + + N +++ L+G
Sbjct: 236 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 281
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 56/127 (44%), Gaps = 6/127 (4%)
Query: 819 QLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMF 877
++W SG + I++ P + + S N Y+++A+ + L++ K + +
Sbjct: 177 RIWDTASGQCLKTLIDDDNP---PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 233
Query: 878 MS--PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPT 935
F F I G ED+ V I+N++ E+ KL+GH + + A PT
Sbjct: 234 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT 293
Query: 936 LNALVSS 942
N + S+
Sbjct: 294 ENIIASA 300
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 37/69 (53%)
Query: 893 DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 952
D+N++ +D +++I++V + LKGH N + F+P N +VS D + +W
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 138
Query: 953 IDKWEKLKS 961
+ + LK+
Sbjct: 139 VKTGKCLKT 147
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 45/222 (20%), Positives = 80/222 (36%), Gaps = 53/222 (23%)
Query: 451 AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKES 510
H V+ + F+ PN + + + DK+IK+W G+ + T GH+ + V
Sbjct: 24 GHTKAVSSVKFS-PNGEW-LASSSADKLIKIWGAYDGKFEKTISGHKLGISDV------- 74
Query: 511 IQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLV 570
A+S+D L S K L
Sbjct: 75 -------------------------------------AWSSDSNLLVSASDDKT----LK 93
Query: 571 EWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG 630
W+ S G +T G F+ N ++ + ++ WD+ L T+ A
Sbjct: 94 IWDVSSGKCLKTLKGHSNYVF-CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 152
Query: 631 GLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLE 672
P S + FN++GSL+ ++ D +I + G L +++
Sbjct: 153 D-PVSA-VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 192
Score = 38.5 bits (88), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 86/197 (43%), Gaps = 28/197 (14%)
Query: 861 GKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKL 920
G+ S F + + A + + F P + +A D ++I+ + + +
Sbjct: 6 GRGSEFVKPNYALKFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTI 64
Query: 921 KGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKV 980
GH+ I+ +A+S N LVS+ D L +W + + LK+ L G +
Sbjct: 65 SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT------------LKGHSNY 112
Query: 981 QF---HNDQTHLLV--VHESQISVYDSKL-ECSRSWSPKDALPA---PISSAIYSCDGLL 1031
F N Q++L+V + + ++D K +C ++ LPA P+S+ ++ DG L
Sbjct: 113 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKT------LPAHSDPVSAVHFNRDGSL 166
Query: 1032 VYAGFCDGAIGVFDAET 1048
+ + DG ++D +
Sbjct: 167 IVSSSYDGLCRIWDTAS 183
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 2/119 (1%)
Query: 837 KPTEESAACIALSKNDSYVMSASGGK-VSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNN 895
K E+ C A S +DSY+ + S K V +++ T K++ + F + N+
Sbjct: 654 KAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNH 713
Query: 896 II-AIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSI 953
++ A G D ++++++ E + + GH N + FSP L S AD L +W +
Sbjct: 714 LLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDV 772
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 71/161 (44%), Gaps = 13/161 (8%)
Query: 419 DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKM 478
DG L + ++ ++ + TG+ ++ + AH V D ++ +++ D
Sbjct: 1014 DGKTLISSSEDSVIQVWNWQ-TGD---YVFLQAHQETVKDFRLLQDSR---LLSWSFDGT 1066
Query: 479 IKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD 538
+KVW+V+ GR + F H+ V S C ++ +F ST+ D K W +D L +
Sbjct: 1067 VKVWNVITGRIERDFTCHQGTVLS-CAISSDATKF-SSTSADKTAKIWSFDLLSPLHELK 1124
Query: 539 APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI 579
A+S DG L + GE + WN S+G +
Sbjct: 1125 GHNGCVRCSAFSLDGILLAT--GDDNGEIRI--WNVSDGQL 1161
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 53/121 (43%), Gaps = 6/121 (4%)
Query: 440 TGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAP 499
TGE + L+I AH V AF+ + I TC DK +K+WD G+ +T++ H
Sbjct: 646 TGE--KLLDIKAHEDEVLCCAFSSDDSY--IATCSADKKVKIWDSATGKLVHTYDEHSEQ 701
Query: 500 VYSVCPHHKESIQFIFST-AIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFS 558
V + C +S + +T + D +K W + R N +S D L S
Sbjct: 702 V-NCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLAS 760
Query: 559 C 559
C
Sbjct: 761 C 761
Score = 38.5 bits (88), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/112 (20%), Positives = 52/112 (46%), Gaps = 2/112 (1%)
Query: 845 CIALSKNDSYVMSASGGKVSLFNMMTFKVMT-MFMSPPPAATFLAFHPQDNNIIAIGMED 903
C + S + ++ A+ KV LF++ T ++ + + F P D+ + I +
Sbjct: 803 CCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDH-LAVIALSQ 861
Query: 904 SSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK 955
V+++N+ +GH + + G+ FSP ++ +++ D + +W K
Sbjct: 862 YCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKK 913
Score = 37.4 bits (85), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Query: 866 FNMMTFKVMT-MFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQ 924
N T K ++ + + P A + A QD IA D ++Q++ E +K H+
Sbjct: 598 INKKTIKNLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHE 657
Query: 925 NRITGLAFSPTLNALVSSGADAQLCMW 951
+ + AFS + + + AD ++ +W
Sbjct: 658 DEVLCCAFSSDDSYIATCSADKKVKIW 684
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 40/214 (18%), Positives = 74/214 (34%), Gaps = 55/214 (25%)
Query: 447 LEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPH 506
L + H V F+ ++ I +CG DK ++V+ G K + HE V +C
Sbjct: 609 LVVRPHTDAVYHACFSQDGQR--IASCGADKTLQVFKAETGEKLLDIKAHEDEV--LCCA 664
Query: 507 HKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGE 566
+I + + D K+K W
Sbjct: 665 FSSDDSYIATCSADKKVKIW---------------------------------------- 684
Query: 567 SHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAA--GDEFQIKFWDMDNMNMLT 624
+ + G + TY ++ + F N L A ++F +K WD++
Sbjct: 685 ------DSATGKLVHTYDEHSEQ-VNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRN 737
Query: 625 TVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKI 658
T+ G + RF+ + LLA ++D +++
Sbjct: 738 TM--FGHTNSVNHCRFSPDDELLASCSADGTLRL 769
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 897 IAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKW 956
+A G ED +++I + + V + GH+ + + F+ L+SS D+ + +W+ W
Sbjct: 976 VAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWN---W 1032
Query: 957 EKLKSRFIQA 966
+ F+QA
Sbjct: 1033 QTGDYVFLQA 1042
Score = 30.8 bits (68), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 892 QDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMW 951
QD+ +++ D +V+++NV ++ HQ + A S S+ AD +W
Sbjct: 1054 QDSRLLSWSF-DGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIW 1112
Query: 952 SID 954
S D
Sbjct: 1113 SFD 1115
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 2/119 (1%)
Query: 837 KPTEESAACIALSKNDSYVMSASGGK-VSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNN 895
K E+ C A S +DSY+ + S K V +++ T K++ + F + N+
Sbjct: 661 KAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNH 720
Query: 896 II-AIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSI 953
++ A G D ++++++ E + + GH N + FSP L S AD L +W +
Sbjct: 721 LLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDV 779
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 71/161 (44%), Gaps = 13/161 (8%)
Query: 419 DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKM 478
DG L + ++ ++ + TG+ ++ + AH V D ++ +++ D
Sbjct: 1021 DGKTLISSSEDSVIQVWNWQ-TGD---YVFLQAHQETVKDFRLLQDSR---LLSWSFDGT 1073
Query: 479 IKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD 538
+KVW+V+ GR + F H+ V S C ++ +F ST+ D K W +D L +
Sbjct: 1074 VKVWNVITGRIERDFTCHQGTVLS-CAISSDATKF-SSTSADKTAKIWSFDLLSPLHELK 1131
Query: 539 APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI 579
A+S DG L + GE + WN S+G +
Sbjct: 1132 GHNGCVRCSAFSLDGILLAT--GDDNGEIRI--WNVSDGQL 1168
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 52/121 (42%), Gaps = 6/121 (4%)
Query: 440 TGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAP 499
TGE + L+I AH V AF+ + I TC DK +K+WD G+ +T++ H
Sbjct: 653 TGE--KLLDIKAHEDEVLCCAFSSDDSY--IATCSADKKVKIWDSATGKLVHTYDEHSEQ 708
Query: 500 VYSVCPHHKESIQFIFSTAI-DGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFS 558
V + C +S + +T D +K W + R N +S D L S
Sbjct: 709 V-NCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLAS 767
Query: 559 C 559
C
Sbjct: 768 C 768
Score = 38.5 bits (88), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/112 (20%), Positives = 52/112 (46%), Gaps = 2/112 (1%)
Query: 845 CIALSKNDSYVMSASGGKVSLFNMMTFKVMT-MFMSPPPAATFLAFHPQDNNIIAIGMED 903
C + S + ++ A+ KV LF++ T ++ + + F P D+ + I +
Sbjct: 810 CCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDH-LAVIALSQ 868
Query: 904 SSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK 955
V+++N+ +GH + + G+ FSP ++ +++ D + +W K
Sbjct: 869 YCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKK 920
Score = 37.4 bits (85), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Query: 866 FNMMTFKVMT-MFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQ 924
N T K ++ + + P A + A QD IA D ++Q++ E +K H+
Sbjct: 605 INKKTIKNLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHE 664
Query: 925 NRITGLAFSPTLNALVSSGADAQLCMW 951
+ + AFS + + + AD ++ +W
Sbjct: 665 DEVLCCAFSSDDSYIATCSADKKVKIW 691
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 40/214 (18%), Positives = 74/214 (34%), Gaps = 55/214 (25%)
Query: 447 LEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPH 506
L + H V F+ ++ I +CG DK ++V+ G K + HE V +C
Sbjct: 616 LVVRPHTDAVYHACFSQDGQR--IASCGADKTLQVFKAETGEKLLDIKAHEDEV--LCCA 671
Query: 507 HKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGE 566
+I + + D K+K W
Sbjct: 672 FSSDDSYIATCSADKKVKIW---------------------------------------- 691
Query: 567 SHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAA--GDEFQIKFWDMDNMNMLT 624
+ + G + TY ++ + F N L A ++F +K WD++
Sbjct: 692 ------DSATGKLVHTYDEHSEQ-VNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRN 744
Query: 625 TVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKI 658
T+ G + RF+ + LLA ++D +++
Sbjct: 745 TM--FGHTNSVNHCRFSPDDELLASCSADGTLRL 776
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 897 IAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKW 956
+A G ED +++I + + V + GH+ + + F+ L+SS D+ + +W+ W
Sbjct: 983 VAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWN---W 1039
Query: 957 EKLKSRFIQA 966
+ F+QA
Sbjct: 1040 QTGDYVFLQA 1049
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 892 QDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMW 951
QD+ +++ D +V+++NV ++ HQ + A S S+ AD +W
Sbjct: 1061 QDSRLLSWSF-DGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIW 1119
Query: 952 SID 954
S D
Sbjct: 1120 SFD 1122
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 54.3 bits (129), Expect = 4e-07, Method: Composition-based stats.
Identities = 50/225 (22%), Positives = 93/225 (41%), Gaps = 8/225 (3%)
Query: 449 IDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHK 508
I H G++D+A++ + L V+ DDK +K+WDV +G+ T +GH Y C +
Sbjct: 60 ISGHKLGISDVAWSSDSNLL--VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFN 115
Query: 509 ESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESH 568
I S + D ++ W A + + + ++ DG+ + S +S +G
Sbjct: 116 PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCR 173
Query: 569 LVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA 628
+ W+ + G +T + V+F LAA + +K WD L T
Sbjct: 174 I--WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG 231
Query: 629 DGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEG 673
F+ G V+ S++ + + N +++ L+G
Sbjct: 232 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 276
Score = 44.3 bits (103), Expect = 4e-04, Method: Composition-based stats.
Identities = 33/141 (23%), Positives = 61/141 (43%), Gaps = 8/141 (5%)
Query: 819 QLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMF 877
++W SG + I++ P + + S N Y+++A+ + L++ K + +
Sbjct: 173 RIWDTASGQCLKTLIDDDNP---PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 229
Query: 878 M--SPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPT 935
F F I G ED+ V I+N++ E+ KL+GH + + A PT
Sbjct: 230 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT 289
Query: 936 LNALVSSGA--DAQLCMWSID 954
N + S+ D + +W D
Sbjct: 290 ENIIASAALENDKTIKLWKSD 310
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 38/157 (24%), Positives = 74/157 (47%), Gaps = 16/157 (10%)
Query: 893 DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 952
D+N++ +D +++I++V + LKGH N + F+P N +VS D + +W
Sbjct: 75 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 134
Query: 953 IDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQ---ISVYDSKL-ECSR 1008
+ + LK+ PA P+ + V F+ D + L+V S ++D+ +C +
Sbjct: 135 VKTGKCLKT----LPA-HSDPV---SAVHFNRDGS--LIVSSSYDGLCRIWDTASGQCLK 184
Query: 1009 SWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFD 1045
+ D P+S +S +G + A D + ++D
Sbjct: 185 TLIDDDN--PPVSFVKFSPNGKYILAATLDNTLKLWD 219
Score = 39.3 bits (90), Expect = 0.012, Method: Composition-based stats.
Identities = 41/175 (23%), Positives = 80/175 (45%), Gaps = 28/175 (16%)
Query: 883 AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSS 942
A + + F P + +A D ++I+ + + + GH+ I+ +A+S N LVS+
Sbjct: 24 AVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 82
Query: 943 GADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQF---HNDQTHLLV--VHESQI 997
D L +W + + LK+ L G + F N Q++L+V + +
Sbjct: 83 SDDKTLKIWDVSSGKCLKT------------LKGHSNYVFCCNFNPQSNLIVSGSFDESV 130
Query: 998 SVYDSKL-ECSRSWSPKDALPA---PISSAIYSCDGLLVYAGFCDGAIGVFDAET 1048
++D K +C ++ LPA P+S+ ++ DG L+ + DG ++D +
Sbjct: 131 RIWDVKTGKCLKT------LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 179
Score = 38.1 bits (87), Expect = 0.025, Method: Composition-based stats.
Identities = 47/236 (19%), Positives = 89/236 (37%), Gaps = 27/236 (11%)
Query: 451 AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKES 510
H V+ + F+ PN + + + DK+IK+W G+ + T GH+ + V +
Sbjct: 20 GHTKAVSSVKFS-PNGEW-LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 77
Query: 511 IQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCG--------TS 562
+ + S + D +K W D C + +F C S
Sbjct: 78 L--LVSASDDKTLKIW-----------DVSSGKC-LKTLKGHSNYVFCCNFNPQSNLIVS 123
Query: 563 KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM 622
+ + W+ G +T + V F+ + +++ + + WD +
Sbjct: 124 GSFDESVRIWDVKTGKCLKTLPA-HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 182
Query: 623 LTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDK 678
L T+ D P S ++F+ G + T DN +K+ S G + L+ G +K
Sbjct: 183 LKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKNEK 236
Score = 31.2 bits (69), Expect = 2.8, Method: Composition-based stats.
Identities = 48/231 (20%), Positives = 87/231 (37%), Gaps = 60/231 (25%)
Query: 340 VRTLNQGSN-VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPF----------- 387
++TL SN V +F+PQ +++ G+ + +W+V + + L P
Sbjct: 99 LKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 157
Query: 388 ---------------KVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIV 432
++WD AS L++D V+ + P+G + A + +
Sbjct: 158 RDGSLIVSSSYDGLCRIWD--TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL 215
Query: 433 HLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCI------------VTCGDDKMIK 480
L+ Y+ L+ + H N++ CI V+ +D ++
Sbjct: 216 KLWDYSKGKCLKTYT--------------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 261
Query: 481 VWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI--DGKIKAWLYD 529
+W++ +GH V S H E+I I S A+ D IK W D
Sbjct: 262 IWNLQTKEIVQKLQGHTDVVISTACHPTENI--IASAALENDKTIKLWKSD 310
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 53.9 bits (128), Expect = 4e-07, Method: Composition-based stats.
Identities = 50/225 (22%), Positives = 93/225 (41%), Gaps = 8/225 (3%)
Query: 449 IDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHK 508
I H G++D+A++ + L V+ DDK +K+WDV +G+ T +GH Y C +
Sbjct: 61 ISGHKLGISDVAWSSDSNLL--VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFN 116
Query: 509 ESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESH 568
I S + D ++ W A + + + ++ DG+ + S +S +G
Sbjct: 117 PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCR 174
Query: 569 LVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA 628
+ W+ + G +T + V+F LAA + +K WD L T
Sbjct: 175 I--WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG 232
Query: 629 DGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEG 673
F+ G V+ S++ + + N +++ L+G
Sbjct: 233 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 277
Score = 43.9 bits (102), Expect = 4e-04, Method: Composition-based stats.
Identities = 33/141 (23%), Positives = 61/141 (43%), Gaps = 8/141 (5%)
Query: 819 QLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMF 877
++W SG + I++ P + + S N Y+++A+ + L++ K + +
Sbjct: 174 RIWDTASGQCLKTLIDDDNP---PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 230
Query: 878 M--SPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPT 935
F F I G ED+ V I+N++ E+ KL+GH + + A PT
Sbjct: 231 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT 290
Query: 936 LNALVSSGA--DAQLCMWSID 954
N + S+ D + +W D
Sbjct: 291 ENIIASAALENDKTIKLWKSD 311
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 38/157 (24%), Positives = 74/157 (47%), Gaps = 16/157 (10%)
Query: 893 DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 952
D+N++ +D +++I++V + LKGH N + F+P N +VS D + +W
Sbjct: 76 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 135
Query: 953 IDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQ---ISVYDSKL-ECSR 1008
+ + LK+ PA P+ + V F+ D + L+V S ++D+ +C +
Sbjct: 136 VKTGKCLKT----LPA-HSDPV---SAVHFNRDGS--LIVSSSYDGLCRIWDTASGQCLK 185
Query: 1009 SWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFD 1045
+ D P+S +S +G + A D + ++D
Sbjct: 186 TLIDDDN--PPVSFVKFSPNGKYILAATLDNTLKLWD 220
Score = 39.3 bits (90), Expect = 0.013, Method: Composition-based stats.
Identities = 41/175 (23%), Positives = 80/175 (45%), Gaps = 28/175 (16%)
Query: 883 AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSS 942
A + + F P + +A D ++I+ + + + GH+ I+ +A+S N LVS+
Sbjct: 25 AVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 83
Query: 943 GADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQF---HNDQTHLLV--VHESQI 997
D L +W + + LK+ L G + F N Q++L+V + +
Sbjct: 84 SDDKTLKIWDVSSGKCLKT------------LKGHSNYVFCCNFNPQSNLIVSGSFDESV 131
Query: 998 SVYDSKL-ECSRSWSPKDALPA---PISSAIYSCDGLLVYAGFCDGAIGVFDAET 1048
++D K +C ++ LPA P+S+ ++ DG L+ + DG ++D +
Sbjct: 132 RIWDVKTGKCLKT------LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 180
Score = 38.1 bits (87), Expect = 0.027, Method: Composition-based stats.
Identities = 47/236 (19%), Positives = 89/236 (37%), Gaps = 27/236 (11%)
Query: 451 AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKES 510
H V+ + F+ PN + + + DK+IK+W G+ + T GH+ + V +
Sbjct: 21 GHTKAVSSVKFS-PNGEW-LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 78
Query: 511 IQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCG--------TS 562
+ + S + D +K W D C + +F C S
Sbjct: 79 L--LVSASDDKTLKIW-----------DVSSGKC-LKTLKGHSNYVFCCNFNPQSNLIVS 124
Query: 563 KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM 622
+ + W+ G +T + V F+ + +++ + + WD +
Sbjct: 125 GSFDESVRIWDVKTGKCLKTLPA-HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 183
Query: 623 LTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDK 678
L T+ D P S ++F+ G + T DN +K+ S G + L+ G +K
Sbjct: 184 LKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKNEK 237
Score = 31.2 bits (69), Expect = 2.8, Method: Composition-based stats.
Identities = 48/231 (20%), Positives = 87/231 (37%), Gaps = 60/231 (25%)
Query: 340 VRTLNQGSN-VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPF----------- 387
++TL SN V +F+PQ +++ G+ + +W+V + + L P
Sbjct: 100 LKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 158
Query: 388 ---------------KVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIV 432
++WD AS L++D V+ + P+G + A + +
Sbjct: 159 RDGSLIVSSSYDGLCRIWD--TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL 216
Query: 433 HLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCI------------VTCGDDKMIK 480
L+ Y+ L+ + H N++ CI V+ +D ++
Sbjct: 217 KLWDYSKGKCLKTYT--------------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 262
Query: 481 VWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI--DGKIKAWLYD 529
+W++ +GH V S H E+I I S A+ D IK W D
Sbjct: 263 IWNLQTKEIVQKLQGHTDVVISTACHPTENI--IASAALENDKTIKLWKSD 311
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 53.9 bits (128), Expect = 4e-07, Method: Composition-based stats.
Identities = 50/225 (22%), Positives = 93/225 (41%), Gaps = 8/225 (3%)
Query: 449 IDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHK 508
I H G++D+A++ + L V+ DDK +K+WDV +G+ T +GH Y C +
Sbjct: 57 ISGHKLGISDVAWSSDSNLL--VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFN 112
Query: 509 ESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESH 568
I S + D ++ W A + + + ++ DG+ + S +S +G
Sbjct: 113 PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCR 170
Query: 569 LVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA 628
+ W+ + G +T + V+F LAA + +K WD L T
Sbjct: 171 I--WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG 228
Query: 629 DGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEG 673
F+ G V+ S++ + + N +++ L+G
Sbjct: 229 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 273
Score = 43.9 bits (102), Expect = 4e-04, Method: Composition-based stats.
Identities = 33/141 (23%), Positives = 61/141 (43%), Gaps = 8/141 (5%)
Query: 819 QLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMF 877
++W SG + I++ P + + S N Y+++A+ + L++ K + +
Sbjct: 170 RIWDTASGQCLKTLIDDDNP---PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 226
Query: 878 M--SPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPT 935
F F I G ED+ V I+N++ E+ KL+GH + + A PT
Sbjct: 227 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT 286
Query: 936 LNALVSSGA--DAQLCMWSID 954
N + S+ D + +W D
Sbjct: 287 ENIIASAALENDKTIKLWKSD 307
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 38/157 (24%), Positives = 74/157 (47%), Gaps = 16/157 (10%)
Query: 893 DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 952
D+N++ +D +++I++V + LKGH N + F+P N +VS D + +W
Sbjct: 72 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 131
Query: 953 IDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQ---ISVYDSKL-ECSR 1008
+ + LK+ PA P+ + V F+ D + L+V S ++D+ +C +
Sbjct: 132 VKTGKCLKT----LPA-HSDPV---SAVHFNRDGS--LIVSSSYDGLCRIWDTASGQCLK 181
Query: 1009 SWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFD 1045
+ D P+S +S +G + A D + ++D
Sbjct: 182 TLIDDDN--PPVSFVKFSPNGKYILAATLDNTLKLWD 216
Score = 39.3 bits (90), Expect = 0.012, Method: Composition-based stats.
Identities = 41/175 (23%), Positives = 80/175 (45%), Gaps = 28/175 (16%)
Query: 883 AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSS 942
A + + F P + +A D ++I+ + + + GH+ I+ +A+S N LVS+
Sbjct: 21 AVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 79
Query: 943 GADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQF---HNDQTHLLV--VHESQI 997
D L +W + + LK+ L G + F N Q++L+V + +
Sbjct: 80 SDDKTLKIWDVSSGKCLKT------------LKGHSNYVFCCNFNPQSNLIVSGSFDESV 127
Query: 998 SVYDSKL-ECSRSWSPKDALPA---PISSAIYSCDGLLVYAGFCDGAIGVFDAET 1048
++D K +C ++ LPA P+S+ ++ DG L+ + DG ++D +
Sbjct: 128 RIWDVKTGKCLKT------LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 176
Score = 38.1 bits (87), Expect = 0.027, Method: Composition-based stats.
Identities = 47/236 (19%), Positives = 89/236 (37%), Gaps = 27/236 (11%)
Query: 451 AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKES 510
H V+ + F+ PN + + + DK+IK+W G+ + T GH+ + V +
Sbjct: 17 GHTKAVSSVKFS-PNGEW-LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 74
Query: 511 IQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCG--------TS 562
+ + S + D +K W D C + +F C S
Sbjct: 75 L--LVSASDDKTLKIW-----------DVSSGKC-LKTLKGHSNYVFCCNFNPQSNLIVS 120
Query: 563 KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM 622
+ + W+ G +T + V F+ + +++ + + WD +
Sbjct: 121 GSFDESVRIWDVKTGKCLKTLPA-HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 179
Query: 623 LTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDK 678
L T+ D P S ++F+ G + T DN +K+ S G + L+ G +K
Sbjct: 180 LKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKNEK 233
Score = 31.2 bits (69), Expect = 2.9, Method: Composition-based stats.
Identities = 48/231 (20%), Positives = 87/231 (37%), Gaps = 60/231 (25%)
Query: 340 VRTLNQGSN-VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPF----------- 387
++TL SN V +F+PQ +++ G+ + +W+V + + L P
Sbjct: 96 LKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 154
Query: 388 ---------------KVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIV 432
++WD AS L++D V+ + P+G + A + +
Sbjct: 155 RDGSLIVSSSYDGLCRIWD--TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL 212
Query: 433 HLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCI------------VTCGDDKMIK 480
L+ Y+ L+ + H N++ CI V+ +D ++
Sbjct: 213 KLWDYSKGKCLKTYT--------------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 258
Query: 481 VWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI--DGKIKAWLYD 529
+W++ +GH V S H E+I I S A+ D IK W D
Sbjct: 259 IWNLQTKEIVQKLQGHTDVVISTACHPTENI--IASAALENDKTIKLWKSD 307
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 53.9 bits (128), Expect = 5e-07, Method: Composition-based stats.
Identities = 50/225 (22%), Positives = 93/225 (41%), Gaps = 8/225 (3%)
Query: 449 IDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHK 508
I H G++D+A++ + L V+ DDK +K+WDV +G+ T +GH Y C +
Sbjct: 67 ISGHKLGISDVAWSSDSNLL--VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFN 122
Query: 509 ESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESH 568
I S + D ++ W A + + + ++ DG+ + S +S +G
Sbjct: 123 PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCR 180
Query: 569 LVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA 628
+ W+ + G +T + V+F LAA + +K WD L T
Sbjct: 181 I--WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG 238
Query: 629 DGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEG 673
F+ G V+ S++ + + N +++ L+G
Sbjct: 239 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 283
Score = 43.9 bits (102), Expect = 5e-04, Method: Composition-based stats.
Identities = 33/141 (23%), Positives = 61/141 (43%), Gaps = 8/141 (5%)
Query: 819 QLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMF 877
++W SG + I++ P + + S N Y+++A+ + L++ K + +
Sbjct: 180 RIWDTASGQCLKTLIDDDNP---PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 236
Query: 878 M--SPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPT 935
F F I G ED+ V I+N++ E+ KL+GH + + A PT
Sbjct: 237 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT 296
Query: 936 LNALVSSGA--DAQLCMWSID 954
N + S+ D + +W D
Sbjct: 297 ENIIASAALENDKTIKLWKSD 317
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 38/157 (24%), Positives = 74/157 (47%), Gaps = 16/157 (10%)
Query: 893 DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 952
D+N++ +D +++I++V + LKGH N + F+P N +VS D + +W
Sbjct: 82 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 141
Query: 953 IDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQ---ISVYDSKL-ECSR 1008
+ + LK+ PA P+ + V F+ D + L+V S ++D+ +C +
Sbjct: 142 VKTGKCLKT----LPA-HSDPV---SAVHFNRDGS--LIVSSSYDGLCRIWDTASGQCLK 191
Query: 1009 SWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFD 1045
+ D P+S +S +G + A D + ++D
Sbjct: 192 TLIDDDN--PPVSFVKFSPNGKYILAATLDNTLKLWD 226
Score = 38.9 bits (89), Expect = 0.014, Method: Composition-based stats.
Identities = 41/175 (23%), Positives = 80/175 (45%), Gaps = 28/175 (16%)
Query: 883 AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSS 942
A + + F P + +A D ++I+ + + + GH+ I+ +A+S N LVS+
Sbjct: 31 AVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 89
Query: 943 GADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQF---HNDQTHLLV--VHESQI 997
D L +W + + LK+ L G + F N Q++L+V + +
Sbjct: 90 SDDKTLKIWDVSSGKCLKT------------LKGHSNYVFCCNFNPQSNLIVSGSFDESV 137
Query: 998 SVYDSKL-ECSRSWSPKDALPA---PISSAIYSCDGLLVYAGFCDGAIGVFDAET 1048
++D K +C ++ LPA P+S+ ++ DG L+ + DG ++D +
Sbjct: 138 RIWDVKTGKCLKT------LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 186
Score = 38.1 bits (87), Expect = 0.029, Method: Composition-based stats.
Identities = 47/236 (19%), Positives = 89/236 (37%), Gaps = 27/236 (11%)
Query: 451 AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKES 510
H V+ + F+ PN + + + DK+IK+W G+ + T GH+ + V +
Sbjct: 27 GHTKAVSSVKFS-PNGEW-LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 84
Query: 511 IQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCG--------TS 562
+ + S + D +K W D C + +F C S
Sbjct: 85 L--LVSASDDKTLKIW-----------DVSSGKC-LKTLKGHSNYVFCCNFNPQSNLIVS 130
Query: 563 KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM 622
+ + W+ G +T + V F+ + +++ + + WD +
Sbjct: 131 GSFDESVRIWDVKTGKCLKTLPA-HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 189
Query: 623 LTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDK 678
L T+ D P S ++F+ G + T DN +K+ S G + L+ G +K
Sbjct: 190 LKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKNEK 243
Score = 31.2 bits (69), Expect = 3.2, Method: Composition-based stats.
Identities = 48/231 (20%), Positives = 87/231 (37%), Gaps = 60/231 (25%)
Query: 340 VRTLNQGSN-VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPF----------- 387
++TL SN V +F+PQ +++ G+ + +W+V + + L P
Sbjct: 106 LKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 164
Query: 388 ---------------KVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIV 432
++WD AS L++D V+ + P+G + A + +
Sbjct: 165 RDGSLIVSSSYDGLCRIWD--TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL 222
Query: 433 HLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCI------------VTCGDDKMIK 480
L+ Y+ L+ + H N++ CI V+ +D ++
Sbjct: 223 KLWDYSKGKCLKTYT--------------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 268
Query: 481 VWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI--DGKIKAWLYD 529
+W++ +GH V S H E+I I S A+ D IK W D
Sbjct: 269 IWNLQTKEIVQKLQGHTDVVISTACHPTENI--IASAALENDKTIKLWKSD 317
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 53.9 bits (128), Expect = 5e-07, Method: Composition-based stats.
Identities = 50/225 (22%), Positives = 93/225 (41%), Gaps = 8/225 (3%)
Query: 449 IDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHK 508
I H G++D+A++ + L V+ DDK +K+WDV +G+ T +GH Y C +
Sbjct: 62 ISGHKLGISDVAWSSDSNLL--VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFN 117
Query: 509 ESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESH 568
I S + D ++ W A + + + ++ DG+ + S +S +G
Sbjct: 118 PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCR 175
Query: 569 LVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA 628
+ W+ + G +T + V+F LAA + +K WD L T
Sbjct: 176 I--WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG 233
Query: 629 DGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEG 673
F+ G V+ S++ + + N +++ L+G
Sbjct: 234 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 278
Score = 43.9 bits (102), Expect = 5e-04, Method: Composition-based stats.
Identities = 33/141 (23%), Positives = 61/141 (43%), Gaps = 8/141 (5%)
Query: 819 QLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMF 877
++W SG + I++ P + + S N Y+++A+ + L++ K + +
Sbjct: 175 RIWDTASGQCLKTLIDDDNP---PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 231
Query: 878 M--SPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPT 935
F F I G ED+ V I+N++ E+ KL+GH + + A PT
Sbjct: 232 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT 291
Query: 936 LNALVSSGA--DAQLCMWSID 954
N + S+ D + +W D
Sbjct: 292 ENIIASAALENDKTIKLWKSD 312
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 38/157 (24%), Positives = 74/157 (47%), Gaps = 16/157 (10%)
Query: 893 DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 952
D+N++ +D +++I++V + LKGH N + F+P N +VS D + +W
Sbjct: 77 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 136
Query: 953 IDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQ---ISVYDSKL-ECSR 1008
+ + LK+ PA P+ + V F+ D + L+V S ++D+ +C +
Sbjct: 137 VKTGKCLKT----LPA-HSDPV---SAVHFNRDGS--LIVSSSYDGLCRIWDTASGQCLK 186
Query: 1009 SWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFD 1045
+ D P+S +S +G + A D + ++D
Sbjct: 187 TLIDDDN--PPVSFVKFSPNGKYILAATLDNTLKLWD 221
Score = 38.9 bits (89), Expect = 0.014, Method: Composition-based stats.
Identities = 41/175 (23%), Positives = 80/175 (45%), Gaps = 28/175 (16%)
Query: 883 AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSS 942
A + + F P + +A D ++I+ + + + GH+ I+ +A+S N LVS+
Sbjct: 26 AVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 84
Query: 943 GADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQF---HNDQTHLLV--VHESQI 997
D L +W + + LK+ L G + F N Q++L+V + +
Sbjct: 85 SDDKTLKIWDVSSGKCLKT------------LKGHSNYVFCCNFNPQSNLIVSGSFDESV 132
Query: 998 SVYDSKL-ECSRSWSPKDALPA---PISSAIYSCDGLLVYAGFCDGAIGVFDAET 1048
++D K +C ++ LPA P+S+ ++ DG L+ + DG ++D +
Sbjct: 133 RIWDVKTGKCLKT------LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 181
Score = 38.1 bits (87), Expect = 0.030, Method: Composition-based stats.
Identities = 47/236 (19%), Positives = 89/236 (37%), Gaps = 27/236 (11%)
Query: 451 AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKES 510
H V+ + F+ PN + + + DK+IK+W G+ + T GH+ + V +
Sbjct: 22 GHTKAVSSVKFS-PNGEW-LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 79
Query: 511 IQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCG--------TS 562
+ + S + D +K W D C + +F C S
Sbjct: 80 L--LVSASDDKTLKIW-----------DVSSGKC-LKTLKGHSNYVFCCNFNPQSNLIVS 125
Query: 563 KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM 622
+ + W+ G +T + V F+ + +++ + + WD +
Sbjct: 126 GSFDESVRIWDVKTGKCLKTLPA-HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 184
Query: 623 LTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDK 678
L T+ D P S ++F+ G + T DN +K+ S G + L+ G +K
Sbjct: 185 LKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKNEK 238
Score = 31.2 bits (69), Expect = 3.2, Method: Composition-based stats.
Identities = 48/231 (20%), Positives = 87/231 (37%), Gaps = 60/231 (25%)
Query: 340 VRTLNQGSN-VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPF----------- 387
++TL SN V +F+PQ +++ G+ + +W+V + + L P
Sbjct: 101 LKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 159
Query: 388 ---------------KVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIV 432
++WD AS L++D V+ + P+G + A + +
Sbjct: 160 RDGSLIVSSSYDGLCRIWD--TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL 217
Query: 433 HLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCI------------VTCGDDKMIK 480
L+ Y+ L+ + H N++ CI V+ +D ++
Sbjct: 218 KLWDYSKGKCLKTYT--------------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 263
Query: 481 VWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI--DGKIKAWLYD 529
+W++ +GH V S H E+I I S A+ D IK W D
Sbjct: 264 IWNLQTKEIVQKLQGHTDVVISTACHPTENI--IASAALENDKTIKLWKSD 312
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 53.9 bits (128), Expect = 5e-07, Method: Composition-based stats.
Identities = 50/225 (22%), Positives = 93/225 (41%), Gaps = 8/225 (3%)
Query: 449 IDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHK 508
I H G++D+A++ + L V+ DDK +K+WDV +G+ T +GH Y C +
Sbjct: 61 ISGHKLGISDVAWSSDSNLL--VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFN 116
Query: 509 ESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESH 568
I S + D ++ W A + + + ++ DG+ + S +S +G
Sbjct: 117 PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCR 174
Query: 569 LVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA 628
+ W+ + G +T + V+F LAA + +K WD L T
Sbjct: 175 I--WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG 232
Query: 629 DGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEG 673
F+ G V+ S++ + + N +++ L+G
Sbjct: 233 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 277
Score = 43.9 bits (102), Expect = 5e-04, Method: Composition-based stats.
Identities = 33/141 (23%), Positives = 61/141 (43%), Gaps = 8/141 (5%)
Query: 819 QLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMF 877
++W SG + I++ P + + S N Y+++A+ + L++ K + +
Sbjct: 174 RIWDTASGQCLKTLIDDDNP---PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 230
Query: 878 M--SPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPT 935
F F I G ED+ V I+N++ E+ KL+GH + + A PT
Sbjct: 231 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT 290
Query: 936 LNALVSSGA--DAQLCMWSID 954
N + S+ D + +W D
Sbjct: 291 ENIIASAALENDKTIKLWKSD 311
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 38/157 (24%), Positives = 74/157 (47%), Gaps = 16/157 (10%)
Query: 893 DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 952
D+N++ +D +++I++V + LKGH N + F+P N +VS D + +W
Sbjct: 76 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 135
Query: 953 IDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQ---ISVYDSKL-ECSR 1008
+ + LK+ PA P+ + V F+ D + L+V S ++D+ +C +
Sbjct: 136 VKTGKCLKT----LPA-HSDPV---SAVHFNRDGS--LIVSSSYDGLCRIWDTASGQCLK 185
Query: 1009 SWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFD 1045
+ D P+S +S +G + A D + ++D
Sbjct: 186 TLIDDDN--PPVSFVKFSPNGKYILAATLDNTLKLWD 220
Score = 39.3 bits (90), Expect = 0.013, Method: Composition-based stats.
Identities = 41/175 (23%), Positives = 80/175 (45%), Gaps = 28/175 (16%)
Query: 883 AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSS 942
A + + F P + +A D ++I+ + + + GH+ I+ +A+S N LVS+
Sbjct: 25 AVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 83
Query: 943 GADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQF---HNDQTHLLV--VHESQI 997
D L +W + + LK+ L G + F N Q++L+V + +
Sbjct: 84 SDDKTLKIWDVSSGKCLKT------------LKGHSNYVFCCNFNPQSNLIVSGSFDESV 131
Query: 998 SVYDSKL-ECSRSWSPKDALPA---PISSAIYSCDGLLVYAGFCDGAIGVFDAET 1048
++D K +C ++ LPA P+S+ ++ DG L+ + DG ++D +
Sbjct: 132 RIWDVKTGKCLKT------LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 180
Score = 38.1 bits (87), Expect = 0.029, Method: Composition-based stats.
Identities = 47/236 (19%), Positives = 89/236 (37%), Gaps = 27/236 (11%)
Query: 451 AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKES 510
H V+ + F+ PN + + + DK+IK+W G+ + T GH+ + V +
Sbjct: 21 GHTKAVSSVKFS-PNGEW-LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 78
Query: 511 IQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCG--------TS 562
+ + S + D +K W D C + +F C S
Sbjct: 79 L--LVSASDDKTLKIW-----------DVSSGKC-LKTLKGHSNYVFCCNFNPQSNLIVS 124
Query: 563 KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM 622
+ + W+ G +T + V F+ + +++ + + WD +
Sbjct: 125 GSFDESVRIWDVKTGKCLKTLPA-HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 183
Query: 623 LTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDK 678
L T+ D P S ++F+ G + T DN +K+ S G + L+ G +K
Sbjct: 184 LKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKNEK 237
Score = 31.2 bits (69), Expect = 3.1, Method: Composition-based stats.
Identities = 48/231 (20%), Positives = 87/231 (37%), Gaps = 60/231 (25%)
Query: 340 VRTLNQGSN-VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPF----------- 387
++TL SN V +F+PQ +++ G+ + +W+V + + L P
Sbjct: 100 LKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 158
Query: 388 ---------------KVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIV 432
++WD AS L++D V+ + P+G + A + +
Sbjct: 159 RDGSLIVSSSYDGLCRIWD--TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL 216
Query: 433 HLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCI------------VTCGDDKMIK 480
L+ Y+ L+ + H N++ CI V+ +D ++
Sbjct: 217 KLWDYSKGKCLKTYT--------------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 262
Query: 481 VWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI--DGKIKAWLYD 529
+W++ +GH V S H E+I I S A+ D IK W D
Sbjct: 263 IWNLQTKEIVQKLQGHTDVVISTACHPTENI--IASAALENDKTIKLWKSD 311
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 53.9 bits (128), Expect = 5e-07, Method: Composition-based stats.
Identities = 50/225 (22%), Positives = 93/225 (41%), Gaps = 8/225 (3%)
Query: 449 IDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHK 508
I H G++D+A++ + L V+ DDK +K+WDV +G+ T +GH Y C +
Sbjct: 66 ISGHKLGISDVAWSSDSNLL--VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFN 121
Query: 509 ESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESH 568
I S + D ++ W A + + + ++ DG+ + S +S +G
Sbjct: 122 PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCR 179
Query: 569 LVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA 628
+ W+ + G +T + V+F LAA + +K WD L T
Sbjct: 180 I--WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG 237
Query: 629 DGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEG 673
F+ G V+ S++ + + N +++ L+G
Sbjct: 238 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 282
Score = 43.9 bits (102), Expect = 5e-04, Method: Composition-based stats.
Identities = 33/141 (23%), Positives = 61/141 (43%), Gaps = 8/141 (5%)
Query: 819 QLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMF 877
++W SG + I++ P + + S N Y+++A+ + L++ K + +
Sbjct: 179 RIWDTASGQCLKTLIDDDNP---PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 235
Query: 878 M--SPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPT 935
F F I G ED+ V I+N++ E+ KL+GH + + A PT
Sbjct: 236 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT 295
Query: 936 LNALVSSGA--DAQLCMWSID 954
N + S+ D + +W D
Sbjct: 296 ENIIASAALENDKTIKLWKSD 316
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 38/157 (24%), Positives = 74/157 (47%), Gaps = 16/157 (10%)
Query: 893 DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 952
D+N++ +D +++I++V + LKGH N + F+P N +VS D + +W
Sbjct: 81 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 140
Query: 953 IDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQ---ISVYDSKL-ECSR 1008
+ + LK+ PA P+ + V F+ D + L+V S ++D+ +C +
Sbjct: 141 VKTGKCLKT----LPA-HSDPV---SAVHFNRDGS--LIVSSSYDGLCRIWDTASGQCLK 190
Query: 1009 SWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFD 1045
+ D P+S +S +G + A D + ++D
Sbjct: 191 TLIDDDN--PPVSFVKFSPNGKYILAATLDNTLKLWD 225
Score = 39.3 bits (90), Expect = 0.013, Method: Composition-based stats.
Identities = 41/175 (23%), Positives = 80/175 (45%), Gaps = 28/175 (16%)
Query: 883 AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSS 942
A + + F P + +A D ++I+ + + + GH+ I+ +A+S N LVS+
Sbjct: 30 AVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 88
Query: 943 GADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQF---HNDQTHLLV--VHESQI 997
D L +W + + LK+ L G + F N Q++L+V + +
Sbjct: 89 SDDKTLKIWDVSSGKCLKT------------LKGHSNYVFCCNFNPQSNLIVSGSFDESV 136
Query: 998 SVYDSKL-ECSRSWSPKDALPA---PISSAIYSCDGLLVYAGFCDGAIGVFDAET 1048
++D K +C ++ LPA P+S+ ++ DG L+ + DG ++D +
Sbjct: 137 RIWDVKTGKCLKT------LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 185
Score = 38.1 bits (87), Expect = 0.029, Method: Composition-based stats.
Identities = 47/236 (19%), Positives = 89/236 (37%), Gaps = 27/236 (11%)
Query: 451 AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKES 510
H V+ + F+ PN + + + DK+IK+W G+ + T GH+ + V +
Sbjct: 26 GHTKAVSSVKFS-PNGEW-LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 83
Query: 511 IQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCG--------TS 562
+ + S + D +K W D C + +F C S
Sbjct: 84 L--LVSASDDKTLKIW-----------DVSSGKC-LKTLKGHSNYVFCCNFNPQSNLIVS 129
Query: 563 KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM 622
+ + W+ G +T + V F+ + +++ + + WD +
Sbjct: 130 GSFDESVRIWDVKTGKCLKTLPA-HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 188
Query: 623 LTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDK 678
L T+ D P S ++F+ G + T DN +K+ S G + L+ G +K
Sbjct: 189 LKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKNEK 242
Score = 31.2 bits (69), Expect = 3.1, Method: Composition-based stats.
Identities = 48/231 (20%), Positives = 87/231 (37%), Gaps = 60/231 (25%)
Query: 340 VRTLNQGSN-VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPF----------- 387
++TL SN V +F+PQ +++ G+ + +W+V + + L P
Sbjct: 105 LKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 163
Query: 388 ---------------KVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIV 432
++WD AS L++D V+ + P+G + A + +
Sbjct: 164 RDGSLIVSSSYDGLCRIWD--TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL 221
Query: 433 HLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCI------------VTCGDDKMIK 480
L+ Y+ L+ + H N++ CI V+ +D ++
Sbjct: 222 KLWDYSKGKCLKTYT--------------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 267
Query: 481 VWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI--DGKIKAWLYD 529
+W++ +GH V S H E+I I S A+ D IK W D
Sbjct: 268 IWNLQTKEIVQKLQGHTDVVISTACHPTENI--IASAALENDKTIKLWKSD 316
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 53.9 bits (128), Expect = 5e-07, Method: Composition-based stats.
Identities = 50/225 (22%), Positives = 93/225 (41%), Gaps = 8/225 (3%)
Query: 449 IDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHK 508
I H G++D+A++ + L V+ DDK +K+WDV +G+ T +GH Y C +
Sbjct: 67 ISGHKLGISDVAWSSDSNLL--VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFN 122
Query: 509 ESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESH 568
I S + D ++ W A + + + ++ DG+ + S +S +G
Sbjct: 123 PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCR 180
Query: 569 LVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA 628
+ W+ + G +T + V+F LAA + +K WD L T
Sbjct: 181 I--WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG 238
Query: 629 DGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEG 673
F+ G V+ S++ + + N +++ L+G
Sbjct: 239 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 283
Score = 43.9 bits (102), Expect = 5e-04, Method: Composition-based stats.
Identities = 33/141 (23%), Positives = 61/141 (43%), Gaps = 8/141 (5%)
Query: 819 QLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMF 877
++W SG + I++ P + + S N Y+++A+ + L++ K + +
Sbjct: 180 RIWDTASGQCLKTLIDDDNP---PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 236
Query: 878 M--SPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPT 935
F F I G ED+ V I+N++ E+ KL+GH + + A PT
Sbjct: 237 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT 296
Query: 936 LNALVSSGA--DAQLCMWSID 954
N + S+ D + +W D
Sbjct: 297 ENIIASAALENDKTIKLWKSD 317
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 38/157 (24%), Positives = 74/157 (47%), Gaps = 16/157 (10%)
Query: 893 DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 952
D+N++ +D +++I++V + LKGH N + F+P N +VS D + +W
Sbjct: 82 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 141
Query: 953 IDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQ---ISVYDSKL-ECSR 1008
+ + LK+ PA P+ + V F+ D + L+V S ++D+ +C +
Sbjct: 142 VKTGKCLKT----LPA-HSDPV---SAVHFNRDGS--LIVSSSYDGLCRIWDTASGQCLK 191
Query: 1009 SWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFD 1045
+ D P+S +S +G + A D + ++D
Sbjct: 192 TLIDDDN--PPVSFVKFSPNGKYILAATLDNTLKLWD 226
Score = 38.9 bits (89), Expect = 0.014, Method: Composition-based stats.
Identities = 41/175 (23%), Positives = 80/175 (45%), Gaps = 28/175 (16%)
Query: 883 AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSS 942
A + + F P + +A D ++I+ + + + GH+ I+ +A+S N LVS+
Sbjct: 31 AVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 89
Query: 943 GADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQF---HNDQTHLLV--VHESQI 997
D L +W + + LK+ L G + F N Q++L+V + +
Sbjct: 90 SDDKTLKIWDVSSGKCLKT------------LKGHSNYVFCCNFNPQSNLIVSGSFDESV 137
Query: 998 SVYDSKL-ECSRSWSPKDALPA---PISSAIYSCDGLLVYAGFCDGAIGVFDAET 1048
++D K +C ++ LPA P+S+ ++ DG L+ + DG ++D +
Sbjct: 138 RIWDVKTGKCLKT------LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 186
Score = 38.1 bits (87), Expect = 0.030, Method: Composition-based stats.
Identities = 47/236 (19%), Positives = 89/236 (37%), Gaps = 27/236 (11%)
Query: 451 AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKES 510
H V+ + F+ PN + + + DK+IK+W G+ + T GH+ + V +
Sbjct: 27 GHTKAVSSVKFS-PNGEW-LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 84
Query: 511 IQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCG--------TS 562
+ + S + D +K W D C + +F C S
Sbjct: 85 L--LVSASDDKTLKIW-----------DVSSGKC-LKTLKGHSNYVFCCNFNPQSNLIVS 130
Query: 563 KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM 622
+ + W+ G +T + V F+ + +++ + + WD +
Sbjct: 131 GSFDESVRIWDVKTGKCLKTLPA-HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 189
Query: 623 LTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDK 678
L T+ D P S ++F+ G + T DN +K+ S G + L+ G +K
Sbjct: 190 LKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKNEK 243
Score = 31.2 bits (69), Expect = 3.3, Method: Composition-based stats.
Identities = 48/231 (20%), Positives = 87/231 (37%), Gaps = 60/231 (25%)
Query: 340 VRTLNQGSN-VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPF----------- 387
++TL SN V +F+PQ +++ G+ + +W+V + + L P
Sbjct: 106 LKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 164
Query: 388 ---------------KVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIV 432
++WD AS L++D V+ + P+G + A + +
Sbjct: 165 RDGSLIVSSSYDGLCRIWD--TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL 222
Query: 433 HLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCI------------VTCGDDKMIK 480
L+ Y+ L+ + H N++ CI V+ +D ++
Sbjct: 223 KLWDYSKGKCLKTYT--------------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 268
Query: 481 VWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI--DGKIKAWLYD 529
+W++ +GH V S H E+I I S A+ D IK W D
Sbjct: 269 IWNLQTKEIVQKLQGHTDVVISTACHPTENI--IASAALENDKTIKLWKSD 317
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 53.9 bits (128), Expect = 5e-07, Method: Composition-based stats.
Identities = 50/225 (22%), Positives = 93/225 (41%), Gaps = 8/225 (3%)
Query: 449 IDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHK 508
I H G++D+A++ + L V+ DDK +K+WDV +G+ T +GH Y C +
Sbjct: 67 ISGHKLGISDVAWSSDSNLL--VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFN 122
Query: 509 ESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESH 568
I S + D ++ W A + + + ++ DG+ + S +S +G
Sbjct: 123 PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCR 180
Query: 569 LVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA 628
+ W+ + G +T + V+F LAA + +K WD L T
Sbjct: 181 I--WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG 238
Query: 629 DGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEG 673
F+ G V+ S++ + + N +++ L+G
Sbjct: 239 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 283
Score = 43.9 bits (102), Expect = 5e-04, Method: Composition-based stats.
Identities = 33/141 (23%), Positives = 61/141 (43%), Gaps = 8/141 (5%)
Query: 819 QLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMF 877
++W SG + I++ P + + S N Y+++A+ + L++ K + +
Sbjct: 180 RIWDTASGQCLKTLIDDDNP---PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 236
Query: 878 M--SPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPT 935
F F I G ED+ V I+N++ E+ KL+GH + + A PT
Sbjct: 237 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT 296
Query: 936 LNALVSSGA--DAQLCMWSID 954
N + S+ D + +W D
Sbjct: 297 ENIIASAALENDKTIKLWKSD 317
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 38/157 (24%), Positives = 74/157 (47%), Gaps = 16/157 (10%)
Query: 893 DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 952
D+N++ +D +++I++V + LKGH N + F+P N +VS D + +W
Sbjct: 82 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 141
Query: 953 IDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQ---ISVYDSKL-ECSR 1008
+ + LK+ PA P+ + V F+ D + L+V S ++D+ +C +
Sbjct: 142 VKTGKCLKT----LPA-HSDPV---SAVHFNRDGS--LIVSSSYDGLCRIWDTASGQCLK 191
Query: 1009 SWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFD 1045
+ D P+S +S +G + A D + ++D
Sbjct: 192 TLIDDDN--PPVSFVKFSPNGKYILAATLDNTLKLWD 226
Score = 38.9 bits (89), Expect = 0.014, Method: Composition-based stats.
Identities = 41/175 (23%), Positives = 80/175 (45%), Gaps = 28/175 (16%)
Query: 883 AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSS 942
A + + F P + +A D ++I+ + + + GH+ I+ +A+S N LVS+
Sbjct: 31 AVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 89
Query: 943 GADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQF---HNDQTHLLV--VHESQI 997
D L +W + + LK+ L G + F N Q++L+V + +
Sbjct: 90 SDDKTLKIWDVSSGKCLKT------------LKGHSNYVFCCNFNPQSNLIVSGSFDESV 137
Query: 998 SVYDSKL-ECSRSWSPKDALPA---PISSAIYSCDGLLVYAGFCDGAIGVFDAET 1048
++D K +C ++ LPA P+S+ ++ DG L+ + DG ++D +
Sbjct: 138 RIWDVKTGKCLKT------LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 186
Score = 38.1 bits (87), Expect = 0.030, Method: Composition-based stats.
Identities = 47/236 (19%), Positives = 89/236 (37%), Gaps = 27/236 (11%)
Query: 451 AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKES 510
H V+ + F+ PN + + + DK+IK+W G+ + T GH+ + V +
Sbjct: 27 GHTKAVSSVKFS-PNGEW-LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 84
Query: 511 IQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCG--------TS 562
+ + S + D +K W D C + +F C S
Sbjct: 85 L--LVSASDDKTLKIW-----------DVSSGKC-LKTLKGHSNYVFCCNFNPQSNLIVS 130
Query: 563 KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM 622
+ + W+ G +T + V F+ + +++ + + WD +
Sbjct: 131 GSFDESVRIWDVKTGKCLKTLPA-HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 189
Query: 623 LTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDK 678
L T+ D P S ++F+ G + T DN +K+ S G + L+ G +K
Sbjct: 190 LKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKNEK 243
Score = 31.2 bits (69), Expect = 3.3, Method: Composition-based stats.
Identities = 48/231 (20%), Positives = 87/231 (37%), Gaps = 60/231 (25%)
Query: 340 VRTLNQGSN-VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPF----------- 387
++TL SN V +F+PQ +++ G+ + +W+V + + L P
Sbjct: 106 LKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 164
Query: 388 ---------------KVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIV 432
++WD AS L++D V+ + P+G + A + +
Sbjct: 165 RDGSLIVSSSYDGLCRIWD--TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL 222
Query: 433 HLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCI------------VTCGDDKMIK 480
L+ Y+ L+ + H N++ CI V+ +D ++
Sbjct: 223 KLWDYSKGKCLKTYT--------------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 268
Query: 481 VWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI--DGKIKAWLYD 529
+W++ +GH V S H E+I I S A+ D IK W D
Sbjct: 269 IWNLQTKEIVQKLQGHTDVVISTACHPTENI--IASAALENDKTIKLWKSD 317
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 2/119 (1%)
Query: 835 ESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQD 893
E K E+ C A S +D ++ + S KV ++N MT +++ + F
Sbjct: 658 EIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSS 717
Query: 894 NNII-AIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMW 951
++++ A G D ++++++ E + + GH N + FSP L S AD L +W
Sbjct: 718 HHLLLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLW 776
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/127 (21%), Positives = 58/127 (45%), Gaps = 5/127 (3%)
Query: 833 INESKPTEESAA---CIALSKNDSYVMSASGGKVSLFNMMTFKVM-TMFMSPPPAATFLA 888
+N P E+ C + S + + +M A+ K+ LF++ T ++ + +
Sbjct: 794 LNLEDPQEDMEVIVKCCSWSADGARIMVAAKNKIFLFDIHTSGLLGEIHTGHHSTIQYCD 853
Query: 889 FHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQL 948
F PQ N++ + + V+++N +GH + + G+ FSP ++ ++S D +
Sbjct: 854 FSPQ-NHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTSSDDQTI 912
Query: 949 CMWSIDK 955
+W K
Sbjct: 913 RLWETKK 919
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 68/158 (43%), Gaps = 18/158 (11%)
Query: 440 TGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAP 499
TGE + LEI AH V AF+ ++ I TC DK +K+W+ + G +T++ H
Sbjct: 652 TGE--KLLEIKAHEDEVLCCAFSTDDR--FIATCSVDKKVKIWNSMTGELVHTYDEHSEQ 707
Query: 500 VYSVCPHHKESIQFIFST-AIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFS 558
V + C S + +T + D +K W + R N +S D L S
Sbjct: 708 V-NCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLAS 766
Query: 559 CGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQF 596
C S +G L W+ + S ++S+ V QF
Sbjct: 767 C--SADGTLKL--WDAT--------SANERKSINVKQF 792
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 6/104 (5%)
Query: 476 DKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV 535
D +KVW+++ G K+ F H+ V S C ++ +F ST+ D K W +D L
Sbjct: 1070 DGTVKVWNIITGNKEKDFVCHQGTVLS-CDISHDATKF-SSTSADKTAKIWSFDLLLPLH 1127
Query: 536 DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI 579
+ A+S D T L + G GE + WN S G +
Sbjct: 1128 ELRGHNGCVRCSAFSVDST-LLATG-DDNGEIRI--WNVSNGEL 1167
Score = 38.1 bits (87), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Query: 447 LEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPH 506
L + H V F+ ++ I +CG DK ++V+ G K + HE V +C
Sbjct: 615 LVVRPHTDAVYHACFSEDGQR--IASCGADKTLQVFKAETGEKLLEIKAHEDEV--LCCA 670
Query: 507 HKESIQFIFSTAIDGKIKAW 526
+FI + ++D K+K W
Sbjct: 671 FSTDDRFIATCSVDKKVKIW 690
Score = 33.9 bits (76), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 16/77 (20%), Positives = 35/77 (45%)
Query: 876 MFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPT 935
+ + P A + A +D IA D ++Q++ E ++K H++ + AFS
Sbjct: 615 LVVRPHTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTD 674
Query: 936 LNALVSSGADAQLCMWS 952
+ + D ++ +W+
Sbjct: 675 DRFIATCSVDKKVKIWN 691
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 57/133 (42%), Gaps = 19/133 (14%)
Query: 383 AHKPFKVWDISAA----SMPLQNALLN------DAAISVNRCVWGPDGLMLGVAFSKHIV 432
A K+WD ++A S+ ++ LN D + V C W DG + VA +K+ +
Sbjct: 769 ADGTLKLWDATSANERKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGARIMVA-AKNKI 827
Query: 433 HLYTYNPTGELRQHLEIDAHVGGVNDIAFAH--PNKQLCIVTCGDDKMIKVWDVVAGRKQ 490
L+ + +G L + H G + I + P L +V +++W+ + K
Sbjct: 828 FLFDIHTSGLLGE-----IHTGHHSTIQYCDFSPQNHLAVVALS-QYCVELWNTDSRSKV 881
Query: 491 YTFEGHEAPVYSV 503
GH + V+ V
Sbjct: 882 ADCRGHLSWVHGV 894
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 88/210 (41%), Gaps = 23/210 (10%)
Query: 846 IALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAAT----FLAFHPQ-DNNIIAIG 900
+A S ++ ++S GG+ + + K M A T + F P D +I G
Sbjct: 115 VAFSPDNRQIVS--GGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSG 172
Query: 901 MEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLK 960
D+ V+++++ + T LKGH N +T + SP + SS D +W + K E L
Sbjct: 173 GWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALS 232
Query: 961 SRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLE------CSRSWSPKD 1014
AP ++ F ++ + E I ++D + + K
Sbjct: 233 EMAAGAPI---------NQICFSPNRYWMCAATEKGIRIFDLENKDIIVELAPEHQGSKK 283
Query: 1015 ALPAPISSAIYSCDGLLVYAGFCDGAIGVF 1044
+P +S A +S DG +Y+G+ D I V+
Sbjct: 284 IVPECVSIA-WSADGSTLYSGYTDNVIRVW 312
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 42/91 (46%), Gaps = 9/91 (9%)
Query: 422 MLGVAFS---KHIVH------LYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVT 472
+L VAFS + IV L +N GE L AH V+ + F+ IV+
Sbjct: 112 VLSVAFSPDNRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVS 171
Query: 473 CGDDKMIKVWDVVAGRKQYTFEGHEAPVYSV 503
G D ++KVWD+ GR +GH V SV
Sbjct: 172 GGWDNLVKVWDLATGRLVTDLKGHTNYVTSV 202
Score = 37.0 bits (84), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 30/51 (58%)
Query: 903 DSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSI 953
D S++++N++ + + K GH + +AFSP +VS G D L +W++
Sbjct: 88 DHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNV 138
Score = 36.6 bits (83), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 58/265 (21%), Positives = 112/265 (42%), Gaps = 61/265 (23%)
Query: 449 IDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSV----- 503
++ H V+D+A + N V+ D +++W++ G+ QY F GH V SV
Sbjct: 63 LEGHSAFVSDVALS--NNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPD 120
Query: 504 ---------------------CPH------HKESIQFI-FSTAIDGKI---KAW-----L 527
C H H + + + FS ++D + W +
Sbjct: 121 NRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKV 180
Query: 528 YDYLGSRVDYDAPG--NWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG-AIKRTYS 584
+D R+ D G N+ T + S DG+ S + K+G + L W+ ++G A+ +
Sbjct: 181 WDLATGRLVTDLKGHTNYVTSVTVSPDGSLCAS--SDKDGVARL--WDLTKGEALSEMAA 236
Query: 585 GFRKRSLGVVQFDTTRNRF-LAAGDEFQIKFWDMDNMNMLTTV--DADGG---LPASPRL 638
G + Q + NR+ + A E I+ +D++N +++ + + G +P +
Sbjct: 237 GAP-----INQICFSPNRYWMCAATEKGIRIFDLENKDIIVELAPEHQGSKKIVPECVSI 291
Query: 639 RFNKEGSLLAVTTSDNGIKILANSD 663
++ +GS L +DN I++ S+
Sbjct: 292 AWSADGSTLYSGYTDNVIRVWGVSE 316
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 64/145 (44%), Gaps = 13/145 (8%)
Query: 822 QPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMM-----TFKVMTM 876
QP D+ S+ T +S C K + + ASGG L + K + +
Sbjct: 17 QPAKADQCYEDVRVSQTTWDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPL 76
Query: 877 FMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNV-------RVDEVKTKLKGHQNRITG 929
+A+ P ++N+IA G ED +V ++ + + E L+GH R+
Sbjct: 77 VCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGI 136
Query: 930 LAFSPTL-NALVSSGADAQLCMWSI 953
+A+ PT N L+S+G D + +W +
Sbjct: 137 VAWHPTAQNVLLSAGCDNVILVWDV 161
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 447 LEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF--EGHEAPVYSV 503
+ ++ H V +A+ HP Q +++ G D +I VWDV G T + H +YSV
Sbjct: 125 ITLEGHTKRVGIVAW-HPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSV 182
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 37/83 (44%)
Query: 582 TYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFN 641
T G KR V T +N L+AG + I WD+ + T+ D + ++
Sbjct: 126 TLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWS 185
Query: 642 KEGSLLAVTTSDNGIKILANSDG 664
++G+L+ + D ++++ G
Sbjct: 186 RDGALICTSCRDKRVRVIEPRKG 208
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/240 (19%), Positives = 97/240 (40%), Gaps = 25/240 (10%)
Query: 333 DDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDI 392
++ ++ R N S+V ++ F+ +Q +L G N G+I +W++ + P +
Sbjct: 100 NNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMN---KCTESPSNYTPL 156
Query: 393 S-AASMPLQNALLNDAAISVNRCVWGPDG-----LMLGVAFSKHIVHLYTYNPTGELRQH 446
+ SM + +++ A V+ G + + K ++HL +P ++Q
Sbjct: 157 TPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQ 216
Query: 447 LEIDAHVGGVNDIAFAHPNKQLCIVTC---GDDKMIKVWDVVAGRK--QYTFEGHEAPVY 501
L + HP + T +D I +WD+ Q +GH+ +
Sbjct: 217 LS----------VVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGIL 266
Query: 502 SVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGT 561
S+ H++ + S+ D + W + + A GNWC ++ + LF+C +
Sbjct: 267 SLDWCHQDE-HLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACAS 325
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 64/145 (44%), Gaps = 13/145 (8%)
Query: 822 QPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMM-----TFKVMTM 876
QP D+ S+ T +S C K + + ASGG L + K + +
Sbjct: 17 QPAKADQCYEDVRVSQTTWDSGFCAVNPKFMALIXEASGGGAFLVLPLGKTGRVDKNVPL 76
Query: 877 FMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNV-------RVDEVKTKLKGHQNRITG 929
+A+ P ++N+IA G ED +V ++ + + E L+GH R+
Sbjct: 77 VXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGI 136
Query: 930 LAFSPTL-NALVSSGADAQLCMWSI 953
+A+ PT N L+S+G D + +W +
Sbjct: 137 VAWHPTAQNVLLSAGXDNVILVWDV 161
Score = 32.7 bits (73), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 447 LEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF--EGHEAPVYSV 503
+ ++ H V +A+ HP Q +++ G D +I VWDV G T + H +YSV
Sbjct: 125 ITLEGHTKRVGIVAW-HPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSV 182
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 37/83 (44%)
Query: 582 TYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFN 641
T G KR V T +N L+AG + I WD+ + T+ D + ++
Sbjct: 126 TLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWS 185
Query: 642 KEGSLLAVTTSDNGIKILANSDG 664
++G+L+ + D ++++ G
Sbjct: 186 RDGALICTSCRDKRVRVIEPRKG 208
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/133 (20%), Positives = 63/133 (47%), Gaps = 7/133 (5%)
Query: 856 MSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE 915
++ S G + + N +T + + ++ A L FHP+D N++ +D +++++N++ D
Sbjct: 126 VAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDT 185
Query: 916 VKT---KLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK---WEKLKSRFIQAPAG 969
+ ++GH++ + + ++S G D L +W I+ +K + P
Sbjct: 186 LVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNK 245
Query: 970 RQSPLVGETKVQF 982
P + + K+ F
Sbjct: 246 TNRPFISQ-KIHF 257
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/133 (20%), Positives = 63/133 (47%), Gaps = 7/133 (5%)
Query: 856 MSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE 915
++ S G + + N +T + + ++ A L FHP+D N++ +D +++++N++ D
Sbjct: 89 VAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDT 148
Query: 916 VKT---KLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK---WEKLKSRFIQAPAG 969
+ ++GH++ + + ++S G D L +W I+ +K + P
Sbjct: 149 LVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNK 208
Query: 970 RQSPLVGETKVQF 982
P + + K+ F
Sbjct: 209 TNRPFISQ-KIHF 220
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/133 (20%), Positives = 63/133 (47%), Gaps = 7/133 (5%)
Query: 856 MSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE 915
++ S G + + N +T + + ++ A L FHP+D N++ +D +++++N++ D
Sbjct: 90 VAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDT 149
Query: 916 VKT---KLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK---WEKLKSRFIQAPAG 969
+ ++GH++ + + ++S G D L +W I+ +K + P
Sbjct: 150 LVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNK 209
Query: 970 RQSPLVGETKVQF 982
P + + K+ F
Sbjct: 210 TNRPFISQ-KIHF 221
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/133 (20%), Positives = 63/133 (47%), Gaps = 7/133 (5%)
Query: 856 MSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE 915
++ S G + + N +T + + ++ A L FHP+D N++ +D +++++N++ D
Sbjct: 85 VAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDT 144
Query: 916 VKT---KLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK---WEKLKSRFIQAPAG 969
+ ++GH++ + + ++S G D L +W I+ +K + P
Sbjct: 145 LVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNK 204
Query: 970 RQSPLVGETKVQF 982
P + + K+ F
Sbjct: 205 TNRPFISQ-KIHF 216
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/133 (20%), Positives = 63/133 (47%), Gaps = 7/133 (5%)
Query: 856 MSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE 915
++ S G + + N +T + + ++ A L FHP+D N++ +D +++++N++ D
Sbjct: 89 VAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDT 148
Query: 916 VKT---KLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK---WEKLKSRFIQAPAG 969
+ ++GH++ + + ++S G D L +W I+ +K + P
Sbjct: 149 LVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNK 208
Query: 970 RQSPLVGETKVQF 982
P + + K+ F
Sbjct: 209 TNRPFISQ-KIHF 220
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 63/262 (24%), Positives = 116/262 (44%), Gaps = 45/262 (17%)
Query: 446 HLEIDAHVGGVNDIAFAHPNKQLCI-VTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 504
H + H V+D+A + N C ++ DK +++WD+ G F GH++ VYSV
Sbjct: 69 HKALTGHNHFVSDLALSQEN---CFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVA 125
Query: 505 --PHHKESIQFIFSTAIDGKIKAWLYDYLG----SRVDYDAPGNWCTMMAY-----SADG 553
P +++ I S + +IK W + LG S + + +W + + Y SA+
Sbjct: 126 FSPDNRQ----ILSAGAEREIKLW--NILGECKFSSAEKENHSDWVSCVRYSPIMKSANK 179
Query: 554 TRLFSCGTSKEG-ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRN-RFLA-AGDEF 610
+ F+ + G + L WN + I+ T F+ V + N +++A G +
Sbjct: 180 VQPFAPYFASVGWDGRLKVWN-TNFQIRYT---FKAHESNVNHLSISPNGKYIATGGKDK 235
Query: 611 QIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRM 670
++ WD+ N+ + D G + ++ FN + +AV T D G+KI
Sbjct: 236 KLLIWDILNLTY-PQREFDAGSTIN-QIAFNPKLQWVAVGT-DQGVKIF----------- 281
Query: 671 LEGRAMDKNRCPSEPISSKPLT 692
M +++ P I ++P+T
Sbjct: 282 ---NLMTQSKAPVCTIEAEPIT 300
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 36/62 (58%)
Query: 892 QDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMW 951
Q+N D +++++++R + GHQ+ + +AFSP ++S+GA+ ++ +W
Sbjct: 86 QENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLW 145
Query: 952 SI 953
+I
Sbjct: 146 NI 147
Score = 33.5 bits (75), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 32/155 (20%), Positives = 65/155 (41%), Gaps = 16/155 (10%)
Query: 903 DSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSR 962
D ++++N +++ K H++ + L+ SP + + G D +L +W I +
Sbjct: 193 DGRLKVWNTNF-QIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQRE 251
Query: 963 FIQAPAGRQSPLVGETK-VQFHNDQT----HLLVVHESQISVYD----SKLECSRSWSPK 1013
F Q + + V DQ +L+ ++ + + +K E + +P+
Sbjct: 252 FDAGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQ 311
Query: 1014 DALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAET 1048
+S ++ G ++AGF DG I F ET
Sbjct: 312 ------CTSLAWNALGKKLFAGFTDGVIRTFSFET 340
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 62/151 (41%), Gaps = 16/151 (10%)
Query: 884 ATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVK-------TKLKGHQNRITGLAFSPTL 936
A F +D+ ++ G D +V I+ + +E L GH + ++ LA S
Sbjct: 29 AGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQEN 88
Query: 937 NALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HES 995
+SS D L +W + K RF+ G QS + V F D +L E
Sbjct: 89 CFAISSSWDKTLRLWDLRTGTTYK-RFV----GHQSEVY---SVAFSPDNRQILSAGAER 140
Query: 996 QISVYDSKLECSRSWSPKDALPAPISSAIYS 1026
+I +++ EC S + K+ +S YS
Sbjct: 141 EIKLWNILGECKFSSAEKENHSDWVSCVRYS 171
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 64/288 (22%), Positives = 106/288 (36%), Gaps = 29/288 (10%)
Query: 387 FKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQH 446
KVWD L SV + G +L + + L+ + +R
Sbjct: 132 IKVWDYETGDF---ERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTM 188
Query: 447 LEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPH 506
D +V V+ + PN IV+ DK IK+W+V G TF GH V V P+
Sbjct: 189 HGHDHNVSSVSIM----PNGDH-IVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPN 243
Query: 507 HKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN------WCTMMAYS----ADGTRL 556
++ I S + D ++ W+ + + + W +YS A G+
Sbjct: 244 QDGTL--IASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSET 301
Query: 557 FSCGT------SKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEF 610
G S + + W+ S G T G GV+ F + L+ D+
Sbjct: 302 KKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVL-FHSGGKFILSCADDK 360
Query: 611 QIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKI 658
++ WD N + T++A S L F+K + + D +K+
Sbjct: 361 TLRVWDYKNKRCMKTLNAHEHFVTS--LDFHKTAPYVVTGSVDQTVKV 406
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 470 IVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 526
I++C DDK ++VWD R T HE V S+ H ++ ++ + ++D +K W
Sbjct: 353 ILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFH--KTAPYVVTGSVDQTVKVW 407
Score = 38.5 bits (88), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 17/78 (21%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 884 ATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSG 943
T + FHP +++ ED+++++++ + + LKGH + + ++F + L S
Sbjct: 111 VTRVIFHPV-FSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCS 169
Query: 944 ADAQLCMWSIDKWEKLKS 961
AD + +W +E +++
Sbjct: 170 ADMTIKLWDFQGFECIRT 187
Score = 33.5 bits (75), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 6/84 (7%)
Query: 449 IDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHK 508
+ H V + F HP + +V+ +D IKVWD G + T +GH V + H
Sbjct: 104 LSGHRSPVTRVIF-HPVFSV-MVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDH- 160
Query: 509 ESIQFIFSTAIDGKIKAWLYDYLG 532
S + + S + D IK W D+ G
Sbjct: 161 -SGKLLASCSADMTIKLW--DFQG 181
Score = 30.8 bits (68), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 22/38 (57%)
Query: 917 KTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSID 954
K L GH++ +T + F P + +VS+ DA + +W +
Sbjct: 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYE 138
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 75/160 (46%), Gaps = 13/160 (8%)
Query: 892 QDNNIIAIGMEDSSVQIYNVRVD--EVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLC 949
+++ + G D V+++ R + +++ L+GHQ + + S TL SS DA +
Sbjct: 46 ENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIR 105
Query: 950 MWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDSKLECSR 1008
+W ++ +++KS AG P+ T + F D +L H +++++ +E +
Sbjct: 106 LWDLENGKQIKS----IDAG---PVDAWT-LAFSPDSQYLATGTHVGKVNIF--GVESGK 155
Query: 1009 SWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAET 1048
D I S YS DG + +G DG I +FD T
Sbjct: 156 KEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIAT 195
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 846 IALSKNDSYVMS-ASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDS 904
IA S + Y+ S A G +++F++ T K++ L F P D+ ++ +D
Sbjct: 170 IAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSP-DSQLLVTASDDG 228
Query: 905 SVQIYNVRVDEVKTKLKGHQNRITGLAFSP 934
++IY+V+ + L GH + + +AF P
Sbjct: 229 YIKIYDVQHANLAGTLSGHASWVLNVAFCP 258
Score = 29.6 bits (65), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 4/83 (4%)
Query: 586 FRKRSLGVVQFDTTRNRFLAAGDEF--QIKFWDMDNMNMLTTVDADGGLPASPRLRFNKE 643
LGVV D + +AA I+ WD++N + ++DA G + L F+ +
Sbjct: 76 LEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDA--GPVDAWTLAFSPD 133
Query: 644 GSLLAVTTSDNGIKILANSDGVR 666
LA T + I G +
Sbjct: 134 SQYLATGTHVGKVNIFGVESGKK 156
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 463 HPNKQLCIVTCGDDKMIKVWDVVAGRKQYT-FEGHEAPVYSVCPHHKESIQFIFSTAIDG 521
HPN+Q + T G D M+ +WDV G + + HEA ++ V H + + +F+ + DG
Sbjct: 245 HPNQQHVVATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEV-HFHPSNPEHLFTCSEDG 303
Query: 522 KIKAW 526
+ W
Sbjct: 304 SLWHW 308
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s
Complex Obtained By Docking Homology Models Of The Rna
And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 51/241 (21%), Positives = 98/241 (40%), Gaps = 33/241 (13%)
Query: 819 QLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGK-VSLFNMM-TFKVMTM 876
+LW +GT + +K +A S ++ ++S S K + L+N + K
Sbjct: 88 RLWDLTTGTTTRRFVGHTK----DVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQ 143
Query: 877 FMSPPPAATFLAFHPQDNN--IIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSP 934
S + + F P +N I++ G D V+++N+ ++KT GH + + SP
Sbjct: 144 DESHSEWVSCVRFSPNSSNPIIVSCGW-DKLVKVWNLANCKLKTNHIGHTGYLNTVTVSP 202
Query: 935 TLNALVSSGADAQLCMWSIDKWEKLKS----RFIQAPAGRQSPLVGETKVQFHNDQTHLL 990
+ S G D Q +W +++ + L + I A + F ++ L
Sbjct: 203 DGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINA-------------LCFSPNRYWLC 249
Query: 991 VVHESQISVYD-------SKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGV 1043
I ++D +L+ + A P +S +S DG ++AG+ D + V
Sbjct: 250 AATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRV 309
Query: 1044 F 1044
+
Sbjct: 310 W 310
Score = 36.6 bits (83), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 9/91 (9%)
Query: 422 MLGVAFS---KHIVH------LYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVT 472
+L VAFS + IV + +N G + ++ ++H V+ + F+ + IV+
Sbjct: 108 VLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVS 167
Query: 473 CGDDKMIKVWDVVAGRKQYTFEGHEAPVYSV 503
CG DK++KVW++ + + GH + +V
Sbjct: 168 CGWDKLVKVWNLANCKLKTNHIGHTGYLNTV 198
Score = 36.2 bits (82), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 65/159 (40%), Gaps = 16/159 (10%)
Query: 476 DKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLG--- 532
D +++WD+ G F GH V SV + I S + D IK W + LG
Sbjct: 84 DGTLRLWDLTTGTTTRRFVGHTKDVLSVA--FSSDNRQIVSGSRDKTIKLW--NTLGVCK 139
Query: 533 SRVDYDAPGNWCTMMAYSADGTR--LFSCGTSKEGESHLVE-WNESEGAIKRTYSGFRKR 589
V ++ W + + +S + + + SCG K LV+ WN + +K + G
Sbjct: 140 YTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDK-----LVKVWNLANCKLKTNHIGHTGY 194
Query: 590 SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA 628
L V + + G + Q WD++ L T+D
Sbjct: 195 -LNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG 232
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 54/119 (45%), Gaps = 19/119 (15%)
Query: 451 AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHE-------AP-VYS 502
H G +N + + P+ LC + G D +WD+ G+ YT +G + +P Y
Sbjct: 190 GHTGYLNTVTVS-PDGSLC-ASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYW 247
Query: 503 VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV---DYDAPGNWCTMMAYSADGTRLFS 558
+C SI+ ++GKI + D L V A CT +A+SADG LF+
Sbjct: 248 LCAATGPSIKIW---DLEGKI---IVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFA 300
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution
Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A Resolution
Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A Resolution
Of 2.45 Angstrom
Length = 340
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 51/241 (21%), Positives = 98/241 (40%), Gaps = 33/241 (13%)
Query: 819 QLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGK-VSLFNMM-TFKVMTM 876
+LW +GT + +K +A S ++ ++S S K + L+N + K
Sbjct: 111 RLWDLTTGTTTRRFVGHTK----DVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQ 166
Query: 877 FMSPPPAATFLAFHPQDNN--IIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSP 934
S + + F P +N I++ G D V+++N+ ++KT GH + + SP
Sbjct: 167 DESHSEWVSCVRFSPNSSNPIIVSCGW-DKLVKVWNLANCKLKTNHIGHTGYLNTVTVSP 225
Query: 935 TLNALVSSGADAQLCMWSIDKWEKLKS----RFIQAPAGRQSPLVGETKVQFHNDQTHLL 990
+ S G D Q +W +++ + L + I A + F ++ L
Sbjct: 226 DGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINA-------------LCFSPNRYWLC 272
Query: 991 VVHESQISVYD-------SKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGV 1043
I ++D +L+ + A P +S +S DG ++AG+ D + V
Sbjct: 273 AATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRV 332
Query: 1044 F 1044
+
Sbjct: 333 W 333
Score = 36.2 bits (82), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 9/91 (9%)
Query: 422 MLGVAFS---KHIVH------LYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVT 472
+L VAFS + IV + +N G + ++ ++H V+ + F+ + IV+
Sbjct: 131 VLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVS 190
Query: 473 CGDDKMIKVWDVVAGRKQYTFEGHEAPVYSV 503
CG DK++KVW++ + + GH + +V
Sbjct: 191 CGWDKLVKVWNLANCKLKTNHIGHTGYLNTV 221
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 54/119 (45%), Gaps = 19/119 (15%)
Query: 451 AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHE-------AP-VYS 502
H G +N + + P+ LC + G D +WD+ G+ YT +G + +P Y
Sbjct: 213 GHTGYLNTVTVS-PDGSLC-ASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYW 270
Query: 503 VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV---DYDAPGNWCTMMAYSADGTRLFS 558
+C SI+ ++GKI + D L V A CT +A+SADG LF+
Sbjct: 271 LCAATGPSIKIW---DLEGKI---IVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFA 323
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 65/159 (40%), Gaps = 16/159 (10%)
Query: 476 DKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLG--- 532
D +++WD+ G F GH V SV + I S + D IK W + LG
Sbjct: 107 DGTLRLWDLTTGTTTRRFVGHTKDVLSVA--FSSDNRQIVSGSRDKTIKLW--NTLGVCK 162
Query: 533 SRVDYDAPGNWCTMMAYSADGTR--LFSCGTSKEGESHLVE-WNESEGAIKRTYSGFRKR 589
V ++ W + + +S + + + SCG K LV+ WN + +K + G
Sbjct: 163 YTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDK-----LVKVWNLANCKLKTNHIGHTGY 217
Query: 590 SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA 628
L V + + G + Q WD++ L T+D
Sbjct: 218 -LNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG 255
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 450 DAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY--TFEGHEAPVYSVCPHH 507
+AH ++D + K+L TC DK IK+++V + T GHE PV+ V H
Sbjct: 6 NAHNELIHDAVLDYYGKRLA--TCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH 63
Query: 508 KESIQFIFSTAIDGKIKAW 526
+ + S + DGK+ W
Sbjct: 64 PKFGTILASCSYDGKVLIW 82
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 79/184 (42%), Gaps = 27/184 (14%)
Query: 344 NQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNAL 403
N+ V +DFHP + +L + G + LW ++ +V I P++
Sbjct: 11 NRSDRVKGIDFHPTEPWVLTTLYS-GRVELWNYETQ-------VEVRSIQVTETPVR--- 59
Query: 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAH 463
A + R W + V + ++ YN TGE + ++ +AH + IA H
Sbjct: 60 ---AGKFIARKNW------IIVGSDDFRIRVFNYN-TGE--KVVDFEAHPDYIRSIA-VH 106
Query: 464 PNKQLCIVTCGDDKMIKVWDVVAGRK-QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGK 522
P K +++ DD +K+W+ + TFEGHE V V + K+ F S +D
Sbjct: 107 PTKPY-VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFA-SGCLDRT 164
Query: 523 IKAW 526
+K W
Sbjct: 165 VKVW 168
Score = 37.4 bits (85), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 46/100 (46%), Gaps = 10/100 (10%)
Query: 861 GKVSLFNMMT---FKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVK 917
G+V L+N T + + + +P A F+A N I +G +D ++++N E
Sbjct: 35 GRVELWNYETQVEVRSIQVTETPVRAGKFIA----RKNWIIVGSDDFRIRVFNYNTGEKV 90
Query: 918 TKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWE 957
+ H + I +A PT ++S D + +W+ WE
Sbjct: 91 VDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN---WE 127
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/71 (21%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 883 AATFLAFHP-QDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVS 941
++ ++P D + +D +++I++ + L+GH + ++ F PTL ++S
Sbjct: 186 GVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIIS 245
Query: 942 SGADAQLCMWS 952
D L +W+
Sbjct: 246 GSEDGTLKIWN 256
Score = 35.0 bits (79), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Query: 455 GVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFI 514
GVN + + + ++T DD IK+WD T EGH + V H ++ I
Sbjct: 186 GVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFH--PTLPII 243
Query: 515 FSTAIDGKIKAW 526
S + DG +K W
Sbjct: 244 ISGSEDGTLKIW 255
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 38/200 (19%), Positives = 81/200 (40%), Gaps = 13/200 (6%)
Query: 432 VHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY 491
V L+ Y E+R + V IA ++ I+ DD I+V++ G K
Sbjct: 37 VELWNYETQVEVRSIQVTETPVRAGKFIA-----RKNWIIVGSDDFRIRVFNYNTGEKVV 91
Query: 492 TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD-YLGSRVDYDAPGNWCTMMAYS 550
FE H + S+ H + ++ S + D +K W ++ ++ ++ +A++
Sbjct: 92 DFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFN 149
Query: 551 ADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNR--FLAAGD 608
F+ G + + W+ + T + ++R + V + ++ + A D
Sbjct: 150 PKDPSTFASGCL---DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD 206
Query: 609 EFQIKFWDMDNMNMLTTVDA 628
+ IK WD + + T++
Sbjct: 207 DLTIKIWDYQTKSCVATLEG 226
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 79/184 (42%), Gaps = 27/184 (14%)
Query: 344 NQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNAL 403
N+ V +DFHP + +L + G + LW ++ +V I P++
Sbjct: 11 NRSDRVKGIDFHPTEPWVLTTLYS-GRVELWNYETQ-------VEVRSIQVTETPVR--- 59
Query: 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAH 463
A + R W + V + ++ YN TGE + ++ +AH + IA H
Sbjct: 60 ---AGKFIARKNW------IIVGSDDFRIRVFNYN-TGE--KVVDFEAHPDYIRSIA-VH 106
Query: 464 PNKQLCIVTCGDDKMIKVWDVVAGRK-QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGK 522
P K +++ DD +K+W+ + TFEGHE V V + K+ F S +D
Sbjct: 107 PTKPY-VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFA-SGCLDRT 164
Query: 523 IKAW 526
+K W
Sbjct: 165 VKVW 168
Score = 37.4 bits (85), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 46/100 (46%), Gaps = 10/100 (10%)
Query: 861 GKVSLFNMMT---FKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVK 917
G+V L+N T + + + +P A F+A N I +G +D ++++N E
Sbjct: 35 GRVELWNYETQVEVRSIQVTETPVRAGKFIA----RKNWIIVGSDDFRIRVFNYNTGEKV 90
Query: 918 TKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWE 957
+ H + I +A PT ++S D + +W+ WE
Sbjct: 91 VDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN---WE 127
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/71 (21%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 883 AATFLAFHP-QDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVS 941
++ ++P D + +D +++I++ + L+GH + ++ F PTL ++S
Sbjct: 186 GVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIIS 245
Query: 942 SGADAQLCMWS 952
D L +W+
Sbjct: 246 GSEDGTLKIWN 256
Score = 35.0 bits (79), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Query: 455 GVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFI 514
GVN + + + ++T DD IK+WD T EGH + V H ++ I
Sbjct: 186 GVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFH--PTLPII 243
Query: 515 FSTAIDGKIKAW 526
S + DG +K W
Sbjct: 244 ISGSEDGTLKIW 255
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 38/200 (19%), Positives = 81/200 (40%), Gaps = 13/200 (6%)
Query: 432 VHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY 491
V L+ Y E+R + V IA ++ I+ DD I+V++ G K
Sbjct: 37 VELWNYETQVEVRSIQVTETPVRAGKFIA-----RKNWIIVGSDDFRIRVFNYNTGEKVV 91
Query: 492 TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD-YLGSRVDYDAPGNWCTMMAYS 550
FE H + S+ H + ++ S + D +K W ++ ++ ++ +A++
Sbjct: 92 DFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFN 149
Query: 551 ADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNR--FLAAGD 608
F+ G + + W+ + T + ++R + V + ++ + A D
Sbjct: 150 PKDPSTFASGCL---DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD 206
Query: 609 EFQIKFWDMDNMNMLTTVDA 628
+ IK WD + + T++
Sbjct: 207 DLTIKIWDYQTKSCVATLEG 226
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 69/152 (45%), Gaps = 12/152 (7%)
Query: 903 DSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSR 962
D +V+++N+ ++++ L GH ++ +A SP + S G D + +W + + +KL S
Sbjct: 540 DKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYS- 598
Query: 963 FIQAPAGRQSPLVGETKVQFHNDQTHLLVVH--ESQISVYDSKLECSRSWSPKD-ALPAP 1019
++A + + + H + + ES+ V D K++ D + PA
Sbjct: 599 -LEANSVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAA 657
Query: 1020 ISSAIYSC-------DGLLVYAGFCDGAIGVF 1044
+ C DG +++G+ DG I V+
Sbjct: 658 TKRKVIYCTSLNWSADGSTLFSGYTDGVIRVW 689
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 64/138 (46%), Gaps = 31/138 (22%)
Query: 442 ELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVY 501
+LR L H G V+ +A + P+ LC + G D ++ +WD+ G+K Y+ E + ++
Sbjct: 552 KLRSTLA--GHTGYVSTVAVS-PDGSLC-ASGGKDGVVLLWDLAEGKKLYSLEANSV-IH 606
Query: 502 SVC--PHHKESIQFIFSTAIDGKIKAW------LYDYL-------GSRVDYDAPGN---- 542
++C P+ ++ A + IK W + + L + D P
Sbjct: 607 ALCFSPN-----RYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRK 661
Query: 543 --WCTMMAYSADGTRLFS 558
+CT + +SADG+ LFS
Sbjct: 662 VIYCTSLNWSADGSTLFS 679
Score = 32.7 bits (73), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 56/234 (23%), Positives = 89/234 (38%), Gaps = 63/234 (26%)
Query: 407 AAISVNRCVWGPDGLMLGVAFS---KHIVH------LYTYNPTGELRQHLEI--DAHVGG 455
A +S R V G +L VAFS + IV + +N GE + + + H
Sbjct: 461 AGVSTRRFV-GHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDW 519
Query: 456 VNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIF 515
V+ + F+ Q IV+ DK +KVW++ + + T GH V +V
Sbjct: 520 VSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTV------------ 567
Query: 516 STAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES 575
A S DG+ S G K+G L W+ +
Sbjct: 568 --------------------------------AVSPDGSLCASGG--KDGVVLL--WDLA 591
Query: 576 EGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD 629
EG K+ YS + + F R +L A E IK WD+++ +++ + D
Sbjct: 592 EG--KKLYSLEANSVIHALCFSPNR-YWLCAATEHGIKIWDLESKSIVEDLKVD 642
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 65/128 (50%), Gaps = 13/128 (10%)
Query: 838 PTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTM----------FMSPPPAATF 886
P + I++S +++Y+ + GK+ L+++ + +V T +S PA
Sbjct: 486 PLRAKPSYISISPSETYIAAGDVXGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKG 545
Query: 887 LAFHPQDNNIIAIGMEDSSVQIYNV-RVDEVKTKLKGHQNRITGLAFSPTLNALVSSGAD 945
+ +++A G D+++ IY+V R ++ L H++ + L + T + LVSSGAD
Sbjct: 546 ANEEEIEEDLVATGSLDTNIFIYSVKRPXKIIKALNAHKDGVNNLLWE-TPSTLVSSGAD 604
Query: 946 AQLCMWSI 953
A + W++
Sbjct: 605 ACIKRWNV 612
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Query: 896 IIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMW 951
II++ + D ++ Y + DEV + GH IT L T+N L+S D ++ W
Sbjct: 312 IISLSL-DGTLNFYELGHDEVLKTISGHNKGITAL----TVNPLISGSYDGRIXEW 362
Score = 30.0 bits (66), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 30/143 (20%), Positives = 65/143 (45%), Gaps = 13/143 (9%)
Query: 829 MTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAA-TFL 887
T DI +S + ++LS+N V G + +F + +V +P A +++
Sbjct: 435 FTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYI 494
Query: 888 AFHPQDNNIIAIGMEDSSVQIYNVRVDEVKT-KLKGHQNRITGLAFSPTLNA-------- 938
+ P + IA G + +Y+++ EVKT + ++I +++ P
Sbjct: 495 SISPSET-YIAAGDVXGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEE 553
Query: 939 -LVSSGA-DAQLCMWSIDKWEKL 959
LV++G+ D + ++S+ + K+
Sbjct: 554 DLVATGSLDTNIFIYSVKRPXKI 576
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 887 LAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADA 946
+ F P D +A G ED ++I+++ ++ L+GH+ I L + P+ + LVS D
Sbjct: 129 VCFSP-DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDR 187
Query: 947 QLCMWSI 953
+ +W +
Sbjct: 188 TVRIWDL 194
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 10/34 (29%), Positives = 21/34 (61%)
Query: 470 IVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSV 503
+ T +D++I++WD+ + +GHE +YS+
Sbjct: 138 LATGAEDRLIRIWDIENRKIVMILQGHEQDIYSL 171
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 880 PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKL---KGHQNRITGLAFSPTL 936
P FLA++P + + G D ++I+ D K +GHQ + +A+SP
Sbjct: 15 PDSRCWFLAWNPAGTLLASCGG-DRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCG 73
Query: 937 NALVSSGADAQLCMW 951
N L S+ DA C+W
Sbjct: 74 NYLASASFDATTCIW 88
Score = 38.5 bits (88), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 895 NIIAIGMEDSSVQIYNVRVD--EVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 952
N +A D++ I+ D E T L+GH+N + +A++P+ N L + D + +W
Sbjct: 74 NYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWE 133
Query: 953 IDK 955
+D+
Sbjct: 134 VDE 136
Score = 34.7 bits (78), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Query: 871 FKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE--VKTKLKGHQNRIT 928
++ +++ S + +HP ++A D +V++Y D+ L+GH++ +
Sbjct: 140 YECVSVLNSHTQDVKHVVWHPS-QELLASASYDDTVKLYREEEDDWVCCATLEGHESTVW 198
Query: 929 GLAFSPTLNALVSSGADAQLCMW 951
LAF P+ L S D + +W
Sbjct: 199 SLAFDPSGQRLASCSDDRTVRIW 221
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 50/130 (38%), Gaps = 9/130 (6%)
Query: 355 HPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRC 414
HP + L G + L G R+ ++W S ++ L +V +
Sbjct: 14 HPDSRCWFLAWNPAGTL-LASCGGDRRI-----RIWGTEGDSWICKSVLSEGHQRTVRKV 67
Query: 415 VWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG 474
W P G L A ++ N + ++ H V +A+A P+ L + TC
Sbjct: 68 AWSPCGNYLASASFDATTCIWKKN-QDDFECVTTLEGHENEVKSVAWA-PSGNL-LATCS 124
Query: 475 DDKMIKVWDV 484
DK + VW+V
Sbjct: 125 RDKSVWVWEV 134
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 3/98 (3%)
Query: 385 KPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELR 444
K VW++ ++LN V VW P +L A V LY +
Sbjct: 127 KSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYR-EEEDDWV 185
Query: 445 QHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 482
++ H V +AF ++L +C DD+ +++W
Sbjct: 186 CCATLEGHESTVWSLAFDPSGQRL--ASCSDDRTVRIW 221
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 450 DAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY--TFEGHEAPVYSVCPHH 507
+AH ++D + K+L TC DK IK+++V + T GHE PV+ V H
Sbjct: 8 NAHNELIHDAVLDYYGKRLA--TCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH 65
Query: 508 KESIQFIFSTAIDGKIKAW 526
+ + S + DGK+ W
Sbjct: 66 PKFGTILASCSYDGKVLIW 84
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 45/201 (22%), Positives = 77/201 (38%), Gaps = 38/201 (18%)
Query: 470 IVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQF----IFSTAIDGKIKA 525
+V+ D M+KVWD +T +GH VY S+QF + S ++D I+
Sbjct: 252 VVSGAYDFMVKVWDPETETCLHTLQGHTNRVY--------SLQFDGIHVVSGSLDTSIRV 303
Query: 526 WLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCG--------TSKEGESHLVEWNESEG 577
W + GN ++ G + + G S +S + W+ G
Sbjct: 304 WDVE----------TGN----CIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTG 349
Query: 578 AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN---MNMLTTVDADGGLPA 634
+T G K V +N + + D+ +K WD+ + L T+++ G
Sbjct: 350 QCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGV 409
Query: 635 SPRLRFNKEGSLLAVTTSDNG 655
R+R + L+ S NG
Sbjct: 410 VWRIRASNT-KLVCAVGSRNG 429
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 46/89 (51%), Gaps = 7/89 (7%)
Query: 897 IAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKW 956
+ G D+S+++++V L GHQ+ +G+ N LVS AD+ + +W I
Sbjct: 292 VVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD--NILVSGNADSTVKIWDIKTG 349
Query: 957 EKLKSRFIQAPAGRQSPLVGETKVQFHND 985
+ L++ +Q P QS + T +QF+ +
Sbjct: 350 QCLQT--LQGPNKHQSAV---TCLQFNKN 373
Score = 36.6 bits (83), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 66/165 (40%), Gaps = 16/165 (9%)
Query: 467 QLC---IVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKI 523
Q C IV+ DD +KVW V G+ T GH V+S +++I I S + D +
Sbjct: 126 QFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWS--SQMRDNI--IISGSTDRTL 181
Query: 524 KAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTY 583
K W + + G+ T+ R+ S ++ L W+ G
Sbjct: 182 KVWNAET--GECIHTLYGHTSTVRCMHLHEKRVV----SGSRDATLRVWDIETGQCLHVL 235
Query: 584 SGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA 628
G ++ VQ+D R ++ +F +K WD + L T+
Sbjct: 236 MGHVA-AVRCVQYDG--RRVVSGAYDFMVKVWDPETETCLHTLQG 277
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 42/79 (53%), Gaps = 5/79 (6%)
Query: 894 NNIIAIGMEDSSVQIYNVRVDEVKTKLKG---HQNRITGLAFSPTLNALVSSGADAQLCM 950
+NI+ G DS+V+I++++ + L+G HQ+ +T L F+ N +++S D + +
Sbjct: 329 DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK--NFVITSSDDGTVKL 386
Query: 951 WSIDKWEKLKSRFIQAPAG 969
W + E +++ G
Sbjct: 387 WDLKTGEFIRNLVTLESGG 405
Score = 35.0 bits (79), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 64/158 (40%), Gaps = 21/158 (13%)
Query: 894 NNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSI 953
+NII G D +++++N E L GH + + + +VS DA L +W I
Sbjct: 169 DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE--KRVVSGSRDATLRVWDI 226
Query: 954 DKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLE-CSRSWSP 1012
+ + L A R G V ++ + V+D + E C +
Sbjct: 227 ETGQCLHVLMGHVAAVRCVQYDGRRVVSG---------AYDFMVKVWDPETETCLHTLQG 277
Query: 1013 KDALPAPISSAIYSC--DGLLVYAGFCDGAIGVFDAET 1048
++ +YS DG+ V +G D +I V+D ET
Sbjct: 278 H-------TNRVYSLQFDGIHVVSGSLDTSIRVWDVET 308
Score = 30.4 bits (67), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 28/136 (20%), Positives = 56/136 (41%), Gaps = 13/136 (9%)
Query: 842 SAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIG 900
+ C+ L ++ V+S S + ++++ T + + + M A + + D + G
Sbjct: 201 TVRCMHL--HEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY---DGRRVVSG 255
Query: 901 MEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLK 960
D V++++ + L+GH NR+ L F +VS D + +W ++
Sbjct: 256 AYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGI--HVVSGSLDTSIRVWDVE-----T 308
Query: 961 SRFIQAPAGRQSPLVG 976
I G QS G
Sbjct: 309 GNCIHTLTGHQSLTSG 324
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 81/184 (44%), Gaps = 26/184 (14%)
Query: 889 FHPQDNNIIAIGMEDSSVQIYNVRVDEVK----------TKLKGHQNRITGLAFSPTLNA 938
+ PQ+ +IA S V +++ K +L+GHQ GL+++P LN
Sbjct: 138 YMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNG 197
Query: 939 -LVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLL------- 990
L+S+ D +C+W I+ K + R I A ++ G T V + HLL
Sbjct: 198 YLLSASDDHTICLWDINATPK-EHRVIDA----KNIFTGHTAV-VEDVAWHLLHESLFGS 251
Query: 991 VVHESQISVYDSK-LECSRSWSPKDALPAPISSAIYSCDGLLVYA-GFCDGAIGVFDAET 1048
V + ++ ++D++ S+ DA A ++ ++ + A G D + ++D
Sbjct: 252 VADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN 311
Query: 1049 LRFR 1052
L+ +
Sbjct: 312 LKLK 315
Score = 37.7 bits (86), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 887 LAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK-LKGHQNRITGLAFSP-TLNALVSSGA 944
L+F+P I+A G D +V ++++R ++K + H++ I + +SP L SSG
Sbjct: 285 LSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGT 344
Query: 945 DAQLCMWSIDK 955
D +L +W + K
Sbjct: 345 DRRLHVWDLSK 355
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 9/95 (9%)
Query: 439 PTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY------- 491
P+GE + L + H +++ +PN +++ DD I +WD+ A K++
Sbjct: 169 PSGECQPDLRLRGHQKEGYGLSW-NPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKN 227
Query: 492 TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 526
F GH A V V H F S A D K+ W
Sbjct: 228 IFTGHTAVVEDVAWHLLHESLF-GSVADDQKLMIW 261
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 81/184 (44%), Gaps = 26/184 (14%)
Query: 889 FHPQDNNIIAIGMEDSSVQIYNVRVDEVK----------TKLKGHQNRITGLAFSPTLNA 938
+ PQ+ +IA S V +++ K +L+GHQ GL+++P LN
Sbjct: 136 YMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNG 195
Query: 939 -LVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLL------- 990
L+S+ D +C+W I+ K + R I A ++ G T V + HLL
Sbjct: 196 YLLSASDDHTICLWDINATPK-EHRVIDA----KNIFTGHTAV-VEDVAWHLLHESLFGS 249
Query: 991 VVHESQISVYDSK-LECSRSWSPKDALPAPISSAIYSCDGLLVYA-GFCDGAIGVFDAET 1048
V + ++ ++D++ S+ DA A ++ ++ + A G D + ++D
Sbjct: 250 VADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN 309
Query: 1049 LRFR 1052
L+ +
Sbjct: 310 LKLK 313
Score = 37.7 bits (86), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 887 LAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK-LKGHQNRITGLAFSP-TLNALVSSGA 944
L+F+P I+A G D +V ++++R ++K + H++ I + +SP L SSG
Sbjct: 283 LSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGT 342
Query: 945 DAQLCMWSIDK 955
D +L +W + K
Sbjct: 343 DRRLHVWDLSK 353
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 9/95 (9%)
Query: 439 PTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY------- 491
P+GE + L + H +++ +PN +++ DD I +WD+ A K++
Sbjct: 167 PSGECQPDLRLRGHQKEGYGLSW-NPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKN 225
Query: 492 TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 526
F GH A V V H F S A D K+ W
Sbjct: 226 IFTGHTAVVEDVAWHLLHESLF-GSVADDQKLMIW 259
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 81/184 (44%), Gaps = 26/184 (14%)
Query: 889 FHPQDNNIIAIGMEDSSVQIYNVRVDEVK----------TKLKGHQNRITGLAFSPTLNA 938
+ PQ+ +IA S V +++ K +L+GHQ GL+++P LN
Sbjct: 140 YMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNG 199
Query: 939 -LVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLL------- 990
L+S+ D +C+W I+ K + R I A ++ G T V + HLL
Sbjct: 200 YLLSASDDHTICLWDINATPK-EHRVIDA----KNIFTGHTAV-VEDVAWHLLHESLFGS 253
Query: 991 VVHESQISVYDSK-LECSRSWSPKDALPAPISSAIYSCDGLLVYA-GFCDGAIGVFDAET 1048
V + ++ ++D++ S+ DA A ++ ++ + A G D + ++D
Sbjct: 254 VADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN 313
Query: 1049 LRFR 1052
L+ +
Sbjct: 314 LKLK 317
Score = 37.7 bits (86), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 887 LAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK-LKGHQNRITGLAFSP-TLNALVSSGA 944
L+F+P I+A G D +V ++++R ++K + H++ I + +SP L SSG
Sbjct: 287 LSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGT 346
Query: 945 DAQLCMWSIDK 955
D +L +W + K
Sbjct: 347 DRRLHVWDLSK 357
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 9/95 (9%)
Query: 439 PTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY------- 491
P+GE + L + H +++ +PN +++ DD I +WD+ A K++
Sbjct: 171 PSGECQPDLRLRGHQKEGYGLSW-NPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKN 229
Query: 492 TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 526
F GH A V V H F S A D K+ W
Sbjct: 230 IFTGHTAVVEDVAWHLLHESLF-GSVADDQKLMIW 263
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 79/184 (42%), Gaps = 27/184 (14%)
Query: 344 NQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNAL 403
N+ V +DFHP + +L + G + LW ++ +V I P++
Sbjct: 11 NRSDRVKGIDFHPTEPWVLTTLYS-GRVELWNYETQ-------VEVRSIQVTETPVR--- 59
Query: 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAH 463
A + R W + V + ++ YN TGE + ++ +AH + IA H
Sbjct: 60 ---AGKFIARKNW------IIVGSDDFRIRVFNYN-TGE--KVVDFEAHPDYIRSIA-VH 106
Query: 464 PNKQLCIVTCGDDKMIKVWDVVAGRK-QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGK 522
P K +++ DD +K+W+ + TFEGHE V V + K+ F S +D
Sbjct: 107 PTKPY-VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFA-SGCLDRT 164
Query: 523 IKAW 526
+K W
Sbjct: 165 VKVW 168
Score = 37.0 bits (84), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 46/100 (46%), Gaps = 10/100 (10%)
Query: 861 GKVSLFNMMT---FKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVK 917
G+V L+N T + + + +P A F+A N I +G +D ++++N E
Sbjct: 35 GRVELWNYETQVEVRSIQVTETPVRAGKFIA----RKNWIIVGSDDFRIRVFNYNTGEKV 90
Query: 918 TKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWE 957
+ H + I +A PT ++S D + +W+ WE
Sbjct: 91 VDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN---WE 127
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/80 (20%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Query: 874 MTMFMSPPPAATFLAFHPQ-DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAF 932
T+ ++ ++P D + +D +++I++ + L+GH + ++ F
Sbjct: 177 FTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF 236
Query: 933 SPTLNALVSSGADAQLCMWS 952
PTL ++S D L +W+
Sbjct: 237 HPTLPIIISGSEDGTLKIWN 256
Score = 35.0 bits (79), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Query: 455 GVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFI 514
GVN + + + ++T DD IK+WD T EGH + V H ++ I
Sbjct: 186 GVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFH--PTLPII 243
Query: 515 FSTAIDGKIKAW 526
S + DG +K W
Sbjct: 244 ISGSEDGTLKIW 255
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 38/200 (19%), Positives = 81/200 (40%), Gaps = 13/200 (6%)
Query: 432 VHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY 491
V L+ Y E+R + V IA ++ I+ DD I+V++ G K
Sbjct: 37 VELWNYETQVEVRSIQVTETPVRAGKFIA-----RKNWIIVGSDDFRIRVFNYNTGEKVV 91
Query: 492 TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD-YLGSRVDYDAPGNWCTMMAYS 550
FE H + S+ H + ++ S + D +K W ++ ++ ++ +A++
Sbjct: 92 DFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFN 149
Query: 551 ADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNR--FLAAGD 608
F+ G + + W+ + T + ++R + V + ++ + A D
Sbjct: 150 PKDPSTFASGCL---DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD 206
Query: 609 EFQIKFWDMDNMNMLTTVDA 628
+ IK WD + + T++
Sbjct: 207 DLTIKIWDYQTKSCVATLEG 226
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 4/94 (4%)
Query: 845 CIALSKN-DSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPA--ATFLAFHPQDNNIIAIG 900
C+A S + DS +S S ++ L++ K + P T LA+HPQ + + G
Sbjct: 174 CVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFG 233
Query: 901 MEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSP 934
E+ +V + + + H +TGL FSP
Sbjct: 234 DENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSP 267
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 65/159 (40%), Gaps = 27/159 (16%)
Query: 362 LLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAI--SVNRCVWGPD 419
+LV ++ G + LWE+ E L F ++ + +++ ++ S + V G
Sbjct: 96 ILVASDSGAVELWELDENETLIVSKFCKYE--------HDDIVSTVSVLSSGTQAVSGSK 147
Query: 420 GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMI 479
+ + V V L +Y AH V +A A P+K ++C +D I
Sbjct: 148 DICIKVWDLAQQVVLSSYR------------AHAAQVTCVA-ASPHKDSVFLSCSEDNRI 194
Query: 480 KVWDVVAGRKQYTFEGHEAPVY---SVCPHHKESIQFIF 515
+WD + G AP Y S+ H ++S F+F
Sbjct: 195 LLWDTRCPKPASQI-GCSAPGYLPTSLAWHPQQSEVFVF 232
Score = 30.4 bits (67), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 5/93 (5%)
Query: 471 VTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPH-HKESIQFIFSTAIDGKIKAW--L 527
V+ D IKVWD+ ++ H A V V HK+S+ S + D +I W
Sbjct: 143 VSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSV--FLSCSEDNRILLWDTR 200
Query: 528 YDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCG 560
S++ APG T +A+ + +F G
Sbjct: 201 CPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFG 233
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 39.3 bits (90), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 450 DAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY--TFEGHEAPVYSVCPHH 507
+AH ++D + K+L TC DK IK+++V + T GHE PV+ V H
Sbjct: 6 NAHNELIHDAVLDYYGKRLA--TCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH 63
Query: 508 KESIQFIFSTAIDGKIKAW 526
+ + S + DGK+ W
Sbjct: 64 PKFGTILASCSYDGKVLIW 82
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound Inhibitor
Ck-869 And Atp
Length = 372
Score = 38.9 bits (89), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 74/180 (41%), Gaps = 34/180 (18%)
Query: 892 QDNNIIAIGMEDSSVQIYN------VRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGAD 945
+D IAI + V IY V+V E LK H ++TG+ ++P N +V+ G D
Sbjct: 18 KDRTQIAICPNNHEVHIYEKSGNKWVQVHE----LKEHNGQVTGIDWAPDSNRIVTCGTD 73
Query: 946 AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLE 1005
+W++ K K + R + V++ ++ V S++ + E
Sbjct: 74 RNAYVWTL-KGRTWKPTLVILRINRAARC-----VRWAPNEKKFAVGSGSRV-ISICYFE 126
Query: 1006 CSRSWSPKDALPAPISSAIYSCD----GLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYI 1061
W + PI S + S D +L+ AG CD F+CRI SAYI
Sbjct: 127 QENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCD------------FKCRIF-SAYI 173
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 416 WGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD 475
W D + + + H VH+Y + ++ H E+ H G V I +A + + IVTCG
Sbjct: 16 WNKDRTQIAICPNNHEVHIYEKSGNKWVQVH-ELKEHNGQVTGIDWAPDSNR--IVTCGT 72
Query: 476 DKMIKVWDV 484
D+ VW +
Sbjct: 73 DRNAYVWTL 81
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 79/184 (42%), Gaps = 27/184 (14%)
Query: 344 NQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNAL 403
N+ V +DFHP + +L + G + +W ++ +V I P++
Sbjct: 11 NRSDRVKGIDFHPTEPWVLTTLYS-GRVEIWNYETQ-------VEVRSIQVTETPVR--- 59
Query: 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAH 463
A + R W + V + ++ YN TGE + ++ +AH + IA H
Sbjct: 60 ---AGKFIARKNW------IIVGSDDFRIRVFNYN-TGE--KVVDFEAHPDYIRSIA-VH 106
Query: 464 PNKQLCIVTCGDDKMIKVWDVVAGRK-QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGK 522
P K +++ DD +K+W+ + TFEGHE V V + K+ F S +D
Sbjct: 107 PTKPY-VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFA-SGCLDRT 164
Query: 523 IKAW 526
+K W
Sbjct: 165 VKVW 168
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 46/100 (46%), Gaps = 10/100 (10%)
Query: 861 GKVSLFNMMT---FKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVK 917
G+V ++N T + + + +P A F+A N I +G +D ++++N E
Sbjct: 35 GRVEIWNYETQVEVRSIQVTETPVRAGKFIA----RKNWIIVGSDDFRIRVFNYNTGEKV 90
Query: 918 TKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWE 957
+ H + I +A PT ++S D + +W+ WE
Sbjct: 91 VDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN---WE 127
Score = 35.0 bits (79), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Query: 455 GVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFI 514
GVN + + + ++T DD IK+WD T EGH + V H ++ I
Sbjct: 186 GVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFH--PTLPII 243
Query: 515 FSTAIDGKIKAW 526
S + DG +K W
Sbjct: 244 ISGSEDGTLKIW 255
Score = 35.0 bits (79), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 16/80 (20%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Query: 874 MTMFMSPPPAATFLAFHPQ-DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAF 932
T+ ++ ++P D + +D +++I++ + L+GH + ++ F
Sbjct: 177 FTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF 236
Query: 933 SPTLNALVSSGADAQLCMWS 952
PTL ++S D L +W+
Sbjct: 237 HPTLPIIISGSEDGTLKIWN 256
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 30/162 (18%), Positives = 68/162 (41%), Gaps = 8/162 (4%)
Query: 470 IVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD 529
I+ DD I+V++ G K FE H + S+ H + ++ S + D +K W ++
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWE 127
Query: 530 -YLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK 588
++ ++ +A++ F+ G + + W+ + T + ++
Sbjct: 128 NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL---DRTVKVWSLGQSTPNFTLTTGQE 184
Query: 589 RSLGVVQFDTTRNR--FLAAGDEFQIKFWDMDNMNMLTTVDA 628
R + V + ++ + A D+ IK WD + + T++
Sbjct: 185 RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEG 226
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 74/180 (41%), Gaps = 34/180 (18%)
Query: 892 QDNNIIAIGMEDSSVQIYN------VRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGAD 945
+D IAI + V IY V+V E LK H ++TG+ ++P N +V+ G D
Sbjct: 18 KDRTQIAICPNNHEVHIYEKSGNKWVQVHE----LKEHNGQVTGVDWAPDSNRIVTCGTD 73
Query: 946 AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLE 1005
+W++ K K + R + V++ ++ V S++ + E
Sbjct: 74 RNAYVWTL-KGRTWKPTLVILRINRAARC-----VRWAPNEKKFAVGSGSRV-ISICYFE 126
Query: 1006 CSRSWSPKDALPAPISSAIYSCD----GLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYI 1061
W + PI S + S D +L+ AG CD F+CRI SAYI
Sbjct: 127 QENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCD------------FKCRIF-SAYI 173
Score = 35.0 bits (79), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 416 WGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD 475
W D + + + H VH+Y + ++ H E+ H G V + +A + + IVTCG
Sbjct: 16 WNKDRTQIAICPNNHEVHIYEKSGNKWVQVH-ELKEHNGQVTGVDWAPDSNR--IVTCGT 72
Query: 476 DKMIKVWDV 484
D+ VW +
Sbjct: 73 DRNAYVWTL 81
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 450 DAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY--TFEGHEAPVYSVCPHH 507
+AH ++D + K++ TC DK IK+++V + T GHE PV+ V H
Sbjct: 6 NAHNEMIHDAVMDYYGKRMA--TCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH 63
Query: 508 KESIQFIFSTAIDGKIKAW 526
+ + S + DGK+ W
Sbjct: 64 PKFGTILASCSYDGKVMIW 82
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 38.5 bits (88), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 29/133 (21%), Positives = 58/133 (43%), Gaps = 5/133 (3%)
Query: 820 LWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMS 879
LW SG ++ + +P E ++ + + + + S +V L+++ K + S
Sbjct: 129 LWSASSGDIL-QLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTS 187
Query: 880 PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK-LKGHQNRITGLAFSPTLNA 938
L++ ++ I++ G + ++VRV E L GH + GL ++P
Sbjct: 188 HSARVGSLSW---NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRH 244
Query: 939 LVSSGADAQLCMW 951
L S G D + +W
Sbjct: 245 LASGGNDNLVNVW 257
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/135 (20%), Positives = 58/135 (42%), Gaps = 6/135 (4%)
Query: 846 IALSKNDSYVMSASGG----KVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIA-IG 900
+A S V++ GG + ++N+ + ++ + + L + P +I+ G
Sbjct: 282 VAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSIL-WSPHYKELISGHG 340
Query: 901 MEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLK 960
+ + I+ +LKGH +R+ L SP + S+ AD L +W + + +
Sbjct: 341 FAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPAR 400
Query: 961 SRFIQAPAGRQSPLV 975
R + + +S L+
Sbjct: 401 RREREKASAAKSSLI 415
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 38.1 bits (87), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 29/133 (21%), Positives = 58/133 (43%), Gaps = 5/133 (3%)
Query: 820 LWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMS 879
LW SG ++ + +P E ++ + + + + S +V L+++ K + S
Sbjct: 140 LWSASSGDIL-QLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTS 198
Query: 880 PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK-LKGHQNRITGLAFSPTLNA 938
L++ ++ I++ G + ++VRV E L GH + GL ++P
Sbjct: 199 HSARVGSLSW---NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRH 255
Query: 939 LVSSGADAQLCMW 951
L S G D + +W
Sbjct: 256 LASGGNDNLVNVW 268
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/135 (20%), Positives = 58/135 (42%), Gaps = 6/135 (4%)
Query: 846 IALSKNDSYVMSASGG----KVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIA-IG 900
+A S V++ GG + ++N+ + ++ + + L + P +I+ G
Sbjct: 293 VAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSIL-WSPHYKELISGHG 351
Query: 901 MEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLK 960
+ + I+ +LKGH +R+ L SP + S+ AD L +W + + +
Sbjct: 352 FAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPAR 411
Query: 961 SRFIQAPAGRQSPLV 975
R + + +S L+
Sbjct: 412 RREREKASAAKSSLI 426
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 38.1 bits (87), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 470 IVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 526
+V+ D I++WD+ G EGHE V + +K I S A DGKIK W
Sbjct: 309 VVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKR----IVSGAYDGKIKVW 361
Score = 33.1 bits (74), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 65/172 (37%), Gaps = 27/172 (15%)
Query: 459 IAFAHPNKQLC-------IVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESI 511
I H LC I+T D ++VWDV G T H V H + +
Sbjct: 168 ILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVL----HLRFNN 223
Query: 512 QFIFSTAIDGKIKAWLY----DYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGES 567
+ + + D I W D RV G+ + D + S G+
Sbjct: 224 GMMVTCSKDRSIAVWDMASPTDITLRRV---LVGHRAAVNVVDFDDKYI----VSASGDR 276
Query: 568 HLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMD 618
+ WN S RT +G KR + +Q+ R+R + +G + I+ WD++
Sbjct: 277 TIKVWNTSTCEFVRTLNG-HKRGIACLQY---RDRLVVSGSSDNTIRLWDIE 324
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/147 (18%), Positives = 66/147 (44%), Gaps = 15/147 (10%)
Query: 812 ATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGK-VSLFNMMT 870
+++ ++W +G ++ I+ + A + L N+ +++ S + +++++M +
Sbjct: 189 GSSDSTVRVWDVNTGEMLNTLIHHCE------AVLHLRFNNGMMVTCSKDRSIAVWDMAS 242
Query: 871 FKVMTM---FMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRI 927
+T+ + A + F D+ I D +++++N E L GH+ I
Sbjct: 243 PTDITLRRVLVGHRAAVNVVDF---DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGI 299
Query: 928 TGLAFSPTLNALVSSGADAQLCMWSID 954
L + L +VS +D + +W I+
Sbjct: 300 ACLQYRDRL--VVSGSSDNTIRLWDIE 324
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 60/151 (39%), Gaps = 16/151 (10%)
Query: 470 IVTCGDDKMIKVWDVVAGRK---QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 526
+VTC D+ I VWD+ + + GH A V V K +I S + D IK W
Sbjct: 226 MVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK----YIVSASGDRTIKVW 281
Query: 527 LYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGF 586
+ + Y RL G+S ++ + W+ GA R G
Sbjct: 282 NTSTCEFVRTLNGHKRGIACLQYR---DRLVVSGSS---DNTIRLWDIECGACLRVLEG- 334
Query: 587 RKRSLGVVQFDTTRNRFLAAGDEFQIKFWDM 617
+ + ++FD R ++ + +IK WD+
Sbjct: 335 HEELVRCIRFDN--KRIVSGAYDGKIKVWDL 363
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 38.1 bits (87), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 29/133 (21%), Positives = 58/133 (43%), Gaps = 5/133 (3%)
Query: 820 LWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMS 879
LW SG ++ + +P E ++ + + + + S +V L+++ K + S
Sbjct: 49 LWSASSGDIL-QLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTS 107
Query: 880 PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK-LKGHQNRITGLAFSPTLNA 938
L++ ++ I++ G + ++VRV E L GH + GL ++P
Sbjct: 108 HSARVGSLSW---NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRH 164
Query: 939 LVSSGADAQLCMW 951
L S G D + +W
Sbjct: 165 LASGGNDNLVNVW 177
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/111 (21%), Positives = 48/111 (43%), Gaps = 6/111 (5%)
Query: 846 IALSKNDSYVMSASGG----KVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIA-IG 900
+A S V++ GG + ++N+ + ++ + + L + P +I+ G
Sbjct: 202 VAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSIL-WSPHYKELISGHG 260
Query: 901 MEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMW 951
+ + I+ +LKGH +R+ L SP + S+ AD L +W
Sbjct: 261 FAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 311
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 38.1 bits (87), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 887 LAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK-LKGHQNRITGLAFSP-TLNALVSSGA 944
L+F+P I+A G D +V ++++R ++K + H++ I + +SP L SSG
Sbjct: 279 LSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGT 338
Query: 945 DAQLCMWSIDK 955
D +L +W + K
Sbjct: 339 DRRLNVWDLSK 349
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 11/76 (14%)
Query: 889 FHPQDNNIIAIGMEDSSVQIYNVRVDEVK----------TKLKGHQNRITGLAFSPTLNA 938
+ PQ+ IIA S V +++ K +L+GHQ GL+++P L+
Sbjct: 132 YMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSG 191
Query: 939 -LVSSGADAQLCMWSI 953
L+S+ D +C+W I
Sbjct: 192 HLLSASDDHTICLWDI 207
Score = 29.6 bits (65), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 41/96 (42%), Gaps = 9/96 (9%)
Query: 438 NPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ------- 490
+P+GE L + H +++ +PN +++ DD I +WD+ A K+
Sbjct: 162 DPSGECNPDLRLRGHQKEGYGLSW-NPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAK 220
Query: 491 YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 526
F GH A V V H F S A D K+ W
Sbjct: 221 TIFTGHTAVVEDVSWHLLHESLF-GSVADDQKLMIW 255
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 37.7 bits (86), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 65/128 (50%), Gaps = 13/128 (10%)
Query: 838 PTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTM----------FMSPPPAATF 886
P + I++S +++Y+ + GK+ L+++ + +V T +S PA
Sbjct: 486 PLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKG 545
Query: 887 LAFHPQDNNIIAIGMEDSSVQIYNV-RVDEVKTKLKGHQNRITGLAFSPTLNALVSSGAD 945
+ +++A G D+++ IY+V R ++ L H++ + L + T + LVSSGAD
Sbjct: 546 ANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWE-TPSTLVSSGAD 604
Query: 946 AQLCMWSI 953
A + W++
Sbjct: 605 ACIKRWNV 612
Score = 33.1 bits (74), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Query: 896 IIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 952
II++ + D ++ Y + DEV + GH IT L T+N L+S D ++ WS
Sbjct: 312 IISLSL-DGTLNFYELGHDEVLKTISGHNKGITAL----TVNPLISGSYDGRIMEWS 363
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 37.7 bits (86), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 887 LAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK-LKGHQNRITGLAFSP-TLNALVSSGA 944
L+F+P I+A G D +V ++++R ++K + H++ I + +SP L SSG
Sbjct: 281 LSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGT 340
Query: 945 DAQLCMWSIDK 955
D +L +W + K
Sbjct: 341 DRRLNVWDLSK 351
Score = 35.4 bits (80), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 37/179 (20%), Positives = 79/179 (44%), Gaps = 16/179 (8%)
Query: 889 FHPQDNNIIAIGMEDSSVQIYNVRVDEVK----------TKLKGHQNRITGLAFSPTLNA 938
+ PQ+ +IIA S V +++ K +L+GHQ GL+++ L+
Sbjct: 134 YMPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSG 193
Query: 939 -LVSSGADAQLCMWSIDKWEKLKSRFIQAPA--GRQSPLVGETKVQFHNDQTHLLVVHES 995
L+S+ D +C+W I+ K + + + A A S +V + ++ V +
Sbjct: 194 HLLSASDDHTVCLWDINAGPK-EGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQ 252
Query: 996 QISVYDSKLE-CSRSWSPKDALPAPISSAIYSCDGLLVYA-GFCDGAIGVFDAETLRFR 1052
++ ++D++ S+ DA A ++ ++ + A G D + ++D L+ +
Sbjct: 253 KLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK 311
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 37.7 bits (86), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 887 LAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK-LKGHQNRITGLAFSP-TLNALVSSGA 944
L+F+P I+A G D +V ++++R ++K + H++ I + +SP L SSG
Sbjct: 281 LSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGT 340
Query: 945 DAQLCMWSIDK 955
D +L +W + K
Sbjct: 341 DRRLNVWDLSK 351
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 37/179 (20%), Positives = 79/179 (44%), Gaps = 16/179 (8%)
Query: 889 FHPQDNNIIAIGMEDSSVQIYNVRVDEVK----------TKLKGHQNRITGLAFSPTLNA 938
+ PQ+ +IIA S V +++ K +L+GHQ GL+++ L+
Sbjct: 134 YXPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSG 193
Query: 939 -LVSSGADAQLCMWSIDKWEKLKSRFIQAPA--GRQSPLVGETKVQFHNDQTHLLVVHES 995
L+S+ D +C+W I+ K + + + A A S +V + ++ V +
Sbjct: 194 HLLSASDDHTVCLWDINAGPK-EGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQ 252
Query: 996 QISVYDSKLE-CSRSWSPKDALPAPISSAIYSCDGLLVYA-GFCDGAIGVFDAETLRFR 1052
++ ++D++ S+ DA A ++ ++ + A G D + ++D L+ +
Sbjct: 253 KLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK 311
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 37.4 bits (85), Expect = 0.046, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
Query: 450 DAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY--TFEGHEAPVYSVCPHH 507
+AH ++D + K+ TC DK IK+++V + T GHE PV+ V H
Sbjct: 6 NAHNEXIHDAVXDYYGKR--XATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH 63
Query: 508 KESIQFIFSTAIDGKIKAW 526
+ + S + DGK+ W
Sbjct: 64 PKFGTILASCSYDGKVXIW 82
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 36.6 bits (83), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 51/228 (22%), Positives = 95/228 (41%), Gaps = 44/228 (19%)
Query: 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLN 405
G++++SMD + TIL W V S + H F++ + +S+ +N
Sbjct: 161 GTHIISMDV--ENVTIL-----------WNVISGTVMQH--FELKETGGSSINAENHS-G 204
Query: 406 DAAISVNRCVWGPDG--LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAH 463
D ++ V+ W D ++ G + + + PTG+L H G ++ + F
Sbjct: 205 DGSLGVD-VEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLI------GHHGPISVLEFND 257
Query: 464 PNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKI 523
NK L ++ DD +++W G Q F GH + S + + S ++DG +
Sbjct: 258 TNKLL--LSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDDK---VISCSMDGSV 312
Query: 524 KAWLYDYLGSRVDYDAPGNWCTMMAYS-ADGTRLFSCGTSKEGESHLV 570
+ W T++A S DG +F+ S++G+ + V
Sbjct: 313 RLWSLKQ-------------NTLLALSIVDGVPIFAGRISQDGQKYAV 347
Score = 33.9 bits (76), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 33/150 (22%), Positives = 59/150 (39%), Gaps = 10/150 (6%)
Query: 905 SVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFI 964
++ +Y + KL GH I+ L F+ T L+S+ D L +W +
Sbjct: 228 AIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYG 287
Query: 965 QAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAI 1024
+ + + VG+ KV + + + ++ K + S D + PI +
Sbjct: 288 HSQSIVSASWVGDDKV--------ISCSMDGSVRLWSLKQNTLLALSIVDGV--PIFAGR 337
Query: 1025 YSCDGLLVYAGFCDGAIGVFDAETLRFRCR 1054
S DG F DG + V+D + L + R
Sbjct: 338 ISQDGQKYAVAFMDGQVNVYDLKKLNSKSR 367
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 36.6 bits (83), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 476 DKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 526
DK +++WDV G F GH++ V SV K S+ I S + D IK W
Sbjct: 86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM--IISGSRDKTIKVW 134
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 66/160 (41%), Gaps = 18/160 (11%)
Query: 896 IIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK 955
II+ G D V+ +N+ +++ GH + I L SP + S+G D ++ +W+
Sbjct: 169 IISAG-NDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN--- 224
Query: 956 WEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYD-------SKLECSR 1008
L ++ Q + + F ++ L + I V+ L
Sbjct: 225 ---LAAKKAMYTLSAQDEVF---SLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEF 278
Query: 1009 SWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAET 1048
+ K A P +S A +S DG ++AG+ D I V+ T
Sbjct: 279 AGYSKAAEPHAVSLA-WSADGQTLFAGYTDNVIRVWQVMT 317
Score = 33.5 bits (75), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 465 NKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIK 524
+ + I++ G+DKM+K W++ + + F GH + + ++ ++ I S DG+I
Sbjct: 164 DDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTL--IASAGKDGEIM 221
Query: 525 AW 526
W
Sbjct: 222 LW 223
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 36.6 bits (83), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 476 DKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 526
DK +++WDV G F GH++ V SV K S+ I S + D IK W
Sbjct: 86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM--IISGSRDKTIKVW 134
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 66/160 (41%), Gaps = 18/160 (11%)
Query: 896 IIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK 955
II+ G D V+ +N+ +++ GH + I L SP + S+G D ++ +W+
Sbjct: 169 IISAG-NDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN--- 224
Query: 956 WEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYD-------SKLECSR 1008
L ++ Q + + F ++ L + I V+ L
Sbjct: 225 ---LAAKKAMYTLSAQDEVF---SLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEF 278
Query: 1009 SWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAET 1048
+ K A P +S A +S DG ++AG+ D I V+ T
Sbjct: 279 AGYSKAAEPHAVSLA-WSADGQTLFAGYTDNVIRVWQVMT 317
Score = 33.5 bits (75), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 465 NKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIK 524
+ + I++ G+DKM+K W++ + + F GH + + ++ ++ I S DG+I
Sbjct: 164 DDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTL--IASAGKDGEIM 221
Query: 525 AW 526
W
Sbjct: 222 LW 223
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 36.6 bits (83), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 476 DKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 526
DK +++WDV G F GH++ V SV K S+ I S + D IK W
Sbjct: 86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM--IISGSRDKTIKVW 134
Score = 34.3 bits (77), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 68/162 (41%), Gaps = 22/162 (13%)
Query: 896 IIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK 955
II+ G D V+ +N+ +++ GH + I L SP + S+G D ++ +W++
Sbjct: 169 IISAG-NDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAA 227
Query: 956 WEKLKSRFIQ--------APAGRQSPLVGETKVQ-FHNDQTHLLVVHESQISVYDSKLEC 1006
+ + + Q +P T ++ F D +L+ + + Y + E
Sbjct: 228 KKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSAAAE- 286
Query: 1007 SRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAET 1048
P +S A +S DG ++AG+ D I V+ T
Sbjct: 287 ----------PHAVSLA-WSADGQTLFAGYTDNVIRVWQVMT 317
Score = 33.5 bits (75), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 465 NKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIK 524
+ + I++ G+DKM+K W++ + + F GH + + ++ ++ I S DG+I
Sbjct: 164 DDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTL--IASAGKDGEIM 221
Query: 525 AW 526
W
Sbjct: 222 LW 223
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 36.6 bits (83), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 476 DKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 526
DK +++WDV G F GH++ V SV K S+ I S + D IK W
Sbjct: 86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM--IISGSRDKTIKVW 134
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 65/156 (41%), Gaps = 18/156 (11%)
Query: 896 IIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK 955
II+ G D V+ +N+ +++ GH + I L SP + S+G D ++ +W+
Sbjct: 169 IISAG-NDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN--- 224
Query: 956 WEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYD-------SKLECSR 1008
L ++ Q + + F ++ L + I V+ L
Sbjct: 225 ---LAAKKAMYTLSAQDEVF---SLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEF 278
Query: 1009 SWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVF 1044
+ K A P +S A +S DG ++AG+ D I V+
Sbjct: 279 AGYSKAAEPHAVSLA-WSADGQTLFAGYTDNVIRVW 313
Score = 33.5 bits (75), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 465 NKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIK 524
+ + I++ G+DKM+K W++ + + F GH + + ++ ++ I S DG+I
Sbjct: 164 DDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTL--IASAGKDGEIM 221
Query: 525 AW 526
W
Sbjct: 222 LW 223
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 36.6 bits (83), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 476 DKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 526
DK +++WDV G F GH++ V SV K S+ I S + D IK W
Sbjct: 80 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM--IISGSRDKTIKVW 128
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 66/160 (41%), Gaps = 18/160 (11%)
Query: 896 IIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK 955
II+ G D V+ +N+ +++ GH + I L SP + S+G D ++ +W+
Sbjct: 163 IISAG-NDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN--- 218
Query: 956 WEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYD-------SKLECSR 1008
L ++ Q + + F ++ L + I V+ L
Sbjct: 219 ---LAAKKAMYTLSAQDEVF---SLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEF 272
Query: 1009 SWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAET 1048
+ K A P +S A +S DG ++AG+ D I V+ T
Sbjct: 273 AGYSKAAEPHAVSLA-WSADGQTLFAGYTDNVIRVWQVMT 311
Score = 33.1 bits (74), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 465 NKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIK 524
+ + I++ G+DKM+K W++ + + F GH + + ++ ++ I S DG+I
Sbjct: 158 DDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTL--IASAGKDGEIM 215
Query: 525 AW 526
W
Sbjct: 216 LW 217
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 36.2 bits (82), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 4/93 (4%)
Query: 845 CIAL--SKNDSYVMSASGGKVSLFNMMTFKVMTM--FMSPPPAATFLAFHPQDNNIIAIG 900
C+A K+ ++ G++ L++ K T F + T + +HP+ ++ A G
Sbjct: 186 CVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACG 245
Query: 901 MEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFS 933
E +V + N++ + H ITGLA+S
Sbjct: 246 DETGNVSLVNIKNPDSAQTSAVHSQNITGLAYS 278
Score = 32.7 bits (73), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 54/123 (43%), Gaps = 19/123 (15%)
Query: 362 LLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGL 421
+LV ++ G + LWE+ +E L F ++ L ++ +D G +
Sbjct: 108 ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTL--SVFSD----------GTQAV 155
Query: 422 MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKV 481
G FS V ++ + L+ + +AH VN +A A P K ++CG+D I +
Sbjct: 156 SGGKDFS---VKVWDLSQKAVLKSY---NAHSSEVNCVA-ACPGKDTIFLSCGEDGRILL 208
Query: 482 WDV 484
WD
Sbjct: 209 WDT 211
Score = 30.8 bits (68), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 7/94 (7%)
Query: 471 VTCGDDKMIKVWDVV--AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW-- 526
V+ G D +KVWD+ A K Y E + CP K++I S DG+I W
Sbjct: 155 VSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACP-GKDTI--FLSCGEDGRILLWDT 211
Query: 527 LYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCG 560
+R+D+ A T + + + F+CG
Sbjct: 212 RKPKPATRIDFCASDTIPTSVTWHPEKDDTFACG 245
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 452 HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 504
H G V ++ A P+ +L V+ D K+WDV G + TF GHE+ + ++C
Sbjct: 183 HTGDVMSLSLA-PDTRL-FVSGACDASAKLWDVREGMCRQTFTGHESDINAIC 233
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 52/238 (21%), Positives = 83/238 (34%), Gaps = 53/238 (22%)
Query: 411 VNRCVWGPDGLMLGVAFSKHIVHLYTYNP-TGELRQHLEIDAHVGGVNDIAFAHPNKQLC 469
V C + P G + +I +Y G +R E+ H G ++ F N+
Sbjct: 100 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ--- 156
Query: 470 IVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD 529
IVT D +WD+ G++ TF GH V S+ S A D
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSL------------SLAPD--------- 195
Query: 530 YLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKR 589
TRLF G ++ W+ EG ++T++G +
Sbjct: 196 ------------------------TRLFVSGAC---DASAKLWDVREGMCRQTFTG-HES 227
Query: 590 SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLL 647
+ + F N F D+ + +D+ L T D + + F+K G LL
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL 285
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 33/154 (21%), Positives = 60/154 (38%), Gaps = 7/154 (4%)
Query: 893 DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 952
D+N I D++ ++++ + T GH + L+ +P VS DA S
Sbjct: 153 DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDA-----S 207
Query: 953 IDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSP 1012
W+ + Q G +S + F N ++ ++D + +
Sbjct: 208 AKLWDVREGMCRQTFTGHESDI--NAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS 265
Query: 1013 KDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDA 1046
D + I+S +S G L+ AG+ D V+DA
Sbjct: 266 HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDA 299
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 452 HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 504
H G V ++ A P+ +L V+ D K+WDV G + TF GHE+ + ++C
Sbjct: 183 HTGDVMSLSLA-PDTRL-FVSGACDASAKLWDVREGMCRQTFTGHESDINAIC 233
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 52/238 (21%), Positives = 83/238 (34%), Gaps = 53/238 (22%)
Query: 411 VNRCVWGPDGLMLGVAFSKHIVHLYTYNP-TGELRQHLEIDAHVGGVNDIAFAHPNKQLC 469
V C + P G + +I +Y G +R E+ H G ++ F N+
Sbjct: 100 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ--- 156
Query: 470 IVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD 529
IVT D +WD+ G++ TF GH V S+ S A D
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSL------------SLAPD--------- 195
Query: 530 YLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKR 589
TRLF G ++ W+ EG ++T++G +
Sbjct: 196 ------------------------TRLFVSGAC---DASAKLWDVREGMCRQTFTG-HES 227
Query: 590 SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLL 647
+ + F N F D+ + +D+ L T D + + F+K G LL
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL 285
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 33/154 (21%), Positives = 60/154 (38%), Gaps = 7/154 (4%)
Query: 893 DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 952
D+N I D++ ++++ + T GH + L+ +P VS DA S
Sbjct: 153 DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDA-----S 207
Query: 953 IDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSP 1012
W+ + Q G +S + F N ++ ++D + +
Sbjct: 208 AKLWDVREGMCRQTFTGHESDI--NAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS 265
Query: 1013 KDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDA 1046
D + I+S +S G L+ AG+ D V+DA
Sbjct: 266 HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDA 299
>pdb|3RVL|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVL|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVM|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVR|A Chain A, Structure Of The Cheyn59dE89R MOLYBDATE COMPLEX
pdb|3RVR|B Chain B, Structure Of The Cheyn59dE89R MOLYBDATE COMPLEX
pdb|3RVS|A Chain A, Structure Of The Cheyn59dE89R TUNGSTATE COMPLEX
pdb|3RVS|B Chain B, Structure Of The Cheyn59dE89R TUNGSTATE COMPLEX
Length = 132
Score = 36.2 bits (82), Expect = 0.11, Method: Composition-based stats.
Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 7/62 (11%)
Query: 601 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRL----RFNKEGSLLAVTTSD 653
N+ A G F I WDM NM+ +L T+ ADG + A P L R KE + A
Sbjct: 47 NKLQAGGYGFVISDWDMPNMDGLELLKTIRADGAMSALPVLMVTARAKKENIIAAAQAGA 106
Query: 654 NG 655
+G
Sbjct: 107 SG 108
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 452 HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 504
H G V ++ A P+ +L V+ D K+WDV G + TF GHE+ + ++C
Sbjct: 183 HTGDVMSLSLA-PDTRL-FVSGACDASAKLWDVREGMCRQTFTGHESDINAIC 233
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 52/238 (21%), Positives = 83/238 (34%), Gaps = 53/238 (22%)
Query: 411 VNRCVWGPDGLMLGVAFSKHIVHLYTYNP-TGELRQHLEIDAHVGGVNDIAFAHPNKQLC 469
V C + P G + +I +Y G +R E+ H G ++ F N+
Sbjct: 100 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ--- 156
Query: 470 IVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD 529
IVT D +WD+ G++ TF GH V S+ S A D
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSL------------SLAPD--------- 195
Query: 530 YLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKR 589
TRLF G ++ W+ EG ++T++G +
Sbjct: 196 ------------------------TRLFVSGAC---DASAKLWDVREGMCRQTFTG-HES 227
Query: 590 SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLL 647
+ + F N F D+ + +D+ L T D + + F+K G LL
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL 285
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 33/154 (21%), Positives = 60/154 (38%), Gaps = 7/154 (4%)
Query: 893 DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 952
D+N I D++ ++++ + T GH + L+ +P VS DA S
Sbjct: 153 DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDA-----S 207
Query: 953 IDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSP 1012
W+ + Q G +S + F N ++ ++D + +
Sbjct: 208 AKLWDVREGMCRQTFTGHESDI--NAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS 265
Query: 1013 KDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDA 1046
D + I+S +S G L+ AG+ D V+DA
Sbjct: 266 HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDA 299
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 452 HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 504
H G V ++ A P+ +L V+ D K+WDV G + TF GHE+ + ++C
Sbjct: 183 HTGDVMSLSLA-PDTRL-FVSGACDASAKLWDVREGMCRQTFTGHESDINAIC 233
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 52/238 (21%), Positives = 83/238 (34%), Gaps = 53/238 (22%)
Query: 411 VNRCVWGPDGLMLGVAFSKHIVHLYTYNP-TGELRQHLEIDAHVGGVNDIAFAHPNKQLC 469
V C + P G + +I +Y G +R E+ H G ++ F N+
Sbjct: 100 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ--- 156
Query: 470 IVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD 529
IVT D +WD+ G++ TF GH V S+ S A D
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSL------------SLAPD--------- 195
Query: 530 YLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKR 589
TRLF G ++ W+ EG ++T++G +
Sbjct: 196 ------------------------TRLFVSGAC---DASAKLWDVREGMCRQTFTG-HES 227
Query: 590 SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLL 647
+ + F N F D+ + +D+ L T D + + F+K G LL
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL 285
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 33/154 (21%), Positives = 60/154 (38%), Gaps = 7/154 (4%)
Query: 893 DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 952
D+N I D++ ++++ + T GH + L+ +P VS DA S
Sbjct: 153 DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDA-----S 207
Query: 953 IDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSP 1012
W+ + Q G +S + F N ++ ++D + +
Sbjct: 208 AKLWDVREGMCRQTFTGHESDI--NAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS 265
Query: 1013 KDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDA 1046
D + I+S +S G L+ AG+ D V+DA
Sbjct: 266 HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDA 299
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 452 HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 504
H G V ++ A P+ +L V+ D K+WDV G + TF GHE+ + ++C
Sbjct: 194 HTGDVMSLSLA-PDTRL-FVSGACDASAKLWDVREGMCRQTFTGHESDINAIC 244
Score = 35.0 bits (79), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 52/238 (21%), Positives = 83/238 (34%), Gaps = 53/238 (22%)
Query: 411 VNRCVWGPDGLMLGVAFSKHIVHLYTYNP-TGELRQHLEIDAHVGGVNDIAFAHPNKQLC 469
V C + P G + +I +Y G +R E+ H G ++ F N+
Sbjct: 111 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ--- 167
Query: 470 IVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD 529
IVT D +WD+ G++ TF GH V S+ S A D
Sbjct: 168 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSL------------SLAPD--------- 206
Query: 530 YLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKR 589
TRLF G ++ W+ EG ++T++G +
Sbjct: 207 ------------------------TRLFVSGAC---DASAKLWDVREGMCRQTFTG-HES 238
Query: 590 SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLL 647
+ + F N F D+ + +D+ L T D + + F+K G LL
Sbjct: 239 DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL 296
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 33/154 (21%), Positives = 60/154 (38%), Gaps = 7/154 (4%)
Query: 893 DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 952
D+N I D++ ++++ + T GH + L+ +P VS DA S
Sbjct: 164 DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDA-----S 218
Query: 953 IDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSP 1012
W+ + Q G +S + F N ++ ++D + +
Sbjct: 219 AKLWDVREGMCRQTFTGHESDI--NAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS 276
Query: 1013 KDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDA 1046
D + I+S +S G L+ AG+ D V+DA
Sbjct: 277 HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDA 310
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 884 ATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLK--GHQNRITGLAFSP 934
AT LA+HP + +A+G + + ++N + + T +K G ITGL F+P
Sbjct: 123 ATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNP 175
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 72/184 (39%), Gaps = 34/184 (18%)
Query: 351 SMDFHPQQQTILLVGTNVGDISLWEVGSRER---------------LAHKPFKVWDISAA 395
S+ +HP + + VG+ GDI LW G +++ L P A+
Sbjct: 125 SLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYAS 184
Query: 396 SMPLQNALLNDAAISVNRCVWGPDGL-----MLGVAFSKHIV-------HLYTYNPTGEL 443
SM L D ++ R D + L V+ S +V ++ N G+
Sbjct: 185 SME-GTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKE 243
Query: 444 RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDV--VAGRKQYTFE-GHEAPV 500
+L + H V +A +P + T D+ +K+WD+ V G+ + + H PV
Sbjct: 244 LWNLRM--HKKKVTHVAL-NPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPV 300
Query: 501 YSVC 504
+ C
Sbjct: 301 NAAC 304
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 884 ATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLK--GHQNRITGLAFSP 934
AT LA+HP + +A+G + + ++N + + T +K G ITGL F+P
Sbjct: 122 ATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNP 174
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 72/184 (39%), Gaps = 34/184 (18%)
Query: 351 SMDFHPQQQTILLVGTNVGDISLWEVGSRER---------------LAHKPFKVWDISAA 395
S+ +HP + + VG+ GDI LW G +++ L P A+
Sbjct: 124 SLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYAS 183
Query: 396 SMPLQNALLNDAAISVNRCVWGPDGL-----MLGVAFSKHIV-------HLYTYNPTGEL 443
SM L D ++ R D + L V+ S +V ++ N G+
Sbjct: 184 SME-GTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKE 242
Query: 444 RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDV--VAGRKQYTFE-GHEAPV 500
+L + H V +A +P + T D+ +K+WD+ V G+ + + H PV
Sbjct: 243 LWNLRM--HKKKVTHVAL-NPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPV 299
Query: 501 YSVC 504
+ C
Sbjct: 300 NAAC 303
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 884 ATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLK--GHQNRITGLAFSP 934
AT LA+HP + +A+G + + ++N + + T +K G ITGL F+P
Sbjct: 122 ATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNP 174
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 72/184 (39%), Gaps = 34/184 (18%)
Query: 351 SMDFHPQQQTILLVGTNVGDISLWEVGSRER---------------LAHKPFKVWDISAA 395
S+ +HP + + VG+ GDI LW G +++ L P A+
Sbjct: 124 SLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYAS 183
Query: 396 SMPLQNALLNDAAISVNRCVWGPDGL-----MLGVAFSKHIV-------HLYTYNPTGEL 443
SM L D ++ R D + L V+ S +V ++ N G+
Sbjct: 184 SME-GTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKE 242
Query: 444 RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDV--VAGRKQYTFE-GHEAPV 500
+L + H V +A +P + T D+ +K+WD+ V G+ + + H PV
Sbjct: 243 LWNLRM--HKKKVTHVAL-NPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPV 299
Query: 501 YSVC 504
+ C
Sbjct: 300 NAAC 303
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 66/160 (41%), Gaps = 18/160 (11%)
Query: 896 IIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK 955
II+ G D V+ +N+ +++ GH + I L SP + S+G D ++ +W+
Sbjct: 169 IISAG-NDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWN--- 224
Query: 956 WEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYD-------SKLECSR 1008
L ++ Q + + F ++ L + I V+ L
Sbjct: 225 ---LAAKKAXYTLSAQDEVF---SLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEF 278
Query: 1009 SWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAET 1048
+ K A P +S A +S DG ++AG+ D I V+ T
Sbjct: 279 AGYSKAAEPHAVSLA-WSADGQTLFAGYTDNVIRVWQVXT 317
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 476 DKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 526
DK +++WDV G F GH++ V SV K S I S + D IK W
Sbjct: 86 DKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASX--IISGSRDKTIKVW 134
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 465 NKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIK 524
+ + I++ G+DK +K W++ + + F GH + + ++ ++ I S DG+I
Sbjct: 164 DDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTL--IASAGKDGEIX 221
Query: 525 AW 526
W
Sbjct: 222 LW 223
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 35.8 bits (81), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 5/91 (5%)
Query: 420 GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMI 479
G L S V ++ G++ ++ H G V +A+AHP + +C D+ +
Sbjct: 25 GTRLATCSSDRSVKIFDVRNGGQILI-ADLRGHEGPVWQVAWAHPMYGNILASCSYDRKV 83
Query: 480 KVWDVVAG--RKQYTFEGHEAPVYSVC--PH 506
+W G K + GH++ V SVC PH
Sbjct: 84 IIWREENGTWEKSHEHAGHDSSVNSVCWAPH 114
Score = 33.5 bits (75), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 55/142 (38%), Gaps = 22/142 (15%)
Query: 410 SVNRCVWGPD--GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFA----- 462
SVN W P GL+L S + L TY G+ +AH G N +++A
Sbjct: 105 SVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVP 164
Query: 463 -----HPNKQ-----LCIVTCGDDKMIKVW---DVVAGRKQYTFEGHEAPVYSV--CPHH 507
HP+ Q + G D +IK+W + +++ E H V V P
Sbjct: 165 GSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSI 224
Query: 508 KESIQFIFSTAIDGKIKAWLYD 529
I S + DG++ W D
Sbjct: 225 GLPTSTIASCSQDGRVFIWTCD 246
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 470 IVTCGDDKMIKVWDVVAGRKQYT--FEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 526
+ TC D+ +K++DV G + GHE PV+ V H + S + D K+ W
Sbjct: 28 LATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW 86
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 35.0 bits (79), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 61/159 (38%), Gaps = 21/159 (13%)
Query: 812 ATANVAPQLW--QPPSGTLMTNDINESKPTE--ESAACIALSKNDSYVMSASGGKVSLFN 867
A+A+ +LW + SG L+T D + K ++ ESA K + ++ G + L
Sbjct: 205 ASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDG--LHLLT 262
Query: 868 MMTFKVMTMFMSPPPAATFLAFHPQDNN-------IIAIGMED--------SSVQIYNVR 912
+ T M ++ S T + + NN ++ G S++ +Y V
Sbjct: 263 VGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVY 322
Query: 913 VDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMW 951
E T LKGH + F L S D + W
Sbjct: 323 SGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAW 361
Score = 34.7 bits (78), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 24/108 (22%), Positives = 53/108 (49%), Gaps = 13/108 (12%)
Query: 896 IIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLN-ALVSSGADAQLCMW--- 951
++A+G VQ+ +++ L+GH+ I +++SP + L ++ AD+++ +W
Sbjct: 158 LVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVR 217
Query: 952 -------SIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV 992
++D+ KS+ +++ + V + F +D HLL V
Sbjct: 218 RASGCLITLDQHNGKKSQAVESANTAHNGKV--NGLCFTSDGLHLLTV 263
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 30/145 (20%), Positives = 62/145 (42%), Gaps = 17/145 (11%)
Query: 825 SGTLMTNDINESKPTEESAACIALSKNDSYVMSASGG-KVSLFNMMTFKVMTMFMSPPPA 883
+ TL T D+ + T S +S V + G KV L ++ + +
Sbjct: 129 TNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQE 188
Query: 884 ATFLAFHPQDNNIIAIGMEDSSVQIYNVR--------VDE--------VKTKLKGHQNRI 927
+++ P+ + I+A DS V++++VR +D+ V++ H ++
Sbjct: 189 ILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKV 248
Query: 928 TGLAFSPTLNALVSSGADAQLCMWS 952
GL F+ L++ G D ++ +W+
Sbjct: 249 NGLCFTSDGLHLLTVGTDNRMRLWN 273
>pdb|3RVN|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89y
pdb|3RVN|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89y
pdb|3RVO|A Chain A, Structure Of Chey-Mn2+ Complex With Substitutions At 59
And 89: N59d E89y
Length = 132
Score = 34.7 bits (78), Expect = 0.26, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 601 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRL 638
N+ A G F I WDM NM+ +L T+ ADG + A P L
Sbjct: 47 NKLQAGGYGFVISDWDMPNMDGLELLKTIRADGAMSALPVL 87
>pdb|3RVP|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89k
pdb|3RVP|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89k
pdb|3RVQ|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d E89k
Length = 132
Score = 34.7 bits (78), Expect = 0.28, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 601 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRL 638
N+ A G F I WDM NM+ +L T+ ADG + A P L
Sbjct: 47 NKLQAGGYGFVISDWDMPNMDGLELLKTIRADGAMSALPVL 87
>pdb|3RVJ|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89q
pdb|3RVJ|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89q
pdb|3RVK|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d E89q
Length = 132
Score = 34.7 bits (78), Expect = 0.28, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 601 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRL 638
N+ A G F I WDM NM+ +L T+ ADG + A P L
Sbjct: 47 NKLQAGGYGFVISDWDMPNMDGLELLKTIRADGAMSALPVL 87
>pdb|1ZDM|A Chain A, Crystal Structure Of Activated Chey Bound To Xe
pdb|1ZDM|B Chain B, Crystal Structure Of Activated Chey Bound To Xe
Length = 129
Score = 34.7 bits (78), Expect = 0.31, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 601 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRLRFNKEG 644
N+ A G F I W+M NM+ +L T+ ADG + A P L E
Sbjct: 44 NKLQAGGYGFVISXWNMPNMDGLELLKTIRADGAMSALPVLMVTAEA 90
>pdb|1C4W|A Chain A, 1.9 A Structure Of A-Thiophosphonate Modified Chey D57c
Length = 128
Score = 34.7 bits (78), Expect = 0.31, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 601 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRLRFNKEG 644
N+ A G F I W+M NM+ +L T+ ADG + A P L E
Sbjct: 43 NKLQAGGYGFVISXWNMPNMDGLELLKTIRADGAMSALPVLMVTAEA 89
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 34.3 bits (77), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 40/190 (21%), Positives = 72/190 (37%), Gaps = 26/190 (13%)
Query: 341 RTL-NQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPL 399
RTL G+ V+ MD+ ++ I+ + G + +W+ F A +MP
Sbjct: 58 RTLKGHGNKVLCMDWCKDKRRIVSSSQD-GKVIVWD----------SFTTNKEHAVTMP- 105
Query: 400 QNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLY--TYNPTGELR-QHLEIDAHVGGV 456
V C + P G + + +Y T++ + + + H +
Sbjct: 106 --------CTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYL 157
Query: 457 NDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFS 516
+ +F + + Q I+T D +WDV +G+ +F GH A V + E+ S
Sbjct: 158 SACSFTNSDMQ--ILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVS 215
Query: 517 TAIDGKIKAW 526
D K W
Sbjct: 216 GGCDKKAMVW 225
Score = 32.7 bits (73), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 31/146 (21%), Positives = 64/146 (43%), Gaps = 11/146 (7%)
Query: 903 DSSVQIYNVRVDEVKTKLKGHQNRITGLAFSP--TLNALVSSGADAQLCMWSIDKWEKLK 960
D + +++V ++ GH + L +P T N VS G D + +W +
Sbjct: 175 DGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDM-----RS 229
Query: 961 SRFIQAPAGRQSPLVGETKVQFH-NDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAP 1019
+ +QA +S + V+++ + ++ +YD + + + K+++
Sbjct: 230 GQCVQAFETHESDV---NSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFG 286
Query: 1020 ISSAIYSCDGLLVYAGFCDGAIGVFD 1045
SS +S G L++AG+ D I V+D
Sbjct: 287 ASSVDFSLSGRLLFAGYNDYTINVWD 312
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 29/57 (50%)
Query: 896 IIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 952
++ G D ++ +++V + L GH+NR++ L SP A S D L +W+
Sbjct: 298 LLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354
Score = 30.0 bits (66), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 470 IVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSV 503
V+ G DK VWD+ +G+ FE HE+ V SV
Sbjct: 213 FVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSV 246
>pdb|1E6M|A Chain A, Two-Component Signal Transduction System D57a Mutant Of
Chey
Length = 128
Score = 34.3 bits (77), Expect = 0.38, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 601 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRLRFNKEG 644
N+ A G F I W+M NM+ +L T+ ADG + A P L E
Sbjct: 43 NKLQAGGYGFVISAWNMPNMDGLELLKTIRADGAMSALPVLMVTAEA 89
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 34.3 bits (77), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 30/55 (54%)
Query: 899 IGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSI 953
+G + +++ + + + + H + IT L F P+ AL+SS D QL +WS+
Sbjct: 111 LGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSV 165
Score = 34.3 bits (77), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
Query: 448 EID-AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPH 506
EID AHV + + F + L ++ D +K+W V G T GH A V +
Sbjct: 130 EIDQAHVSEITKLKFFPSGEAL--ISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAII 187
Query: 507 HKESIQFIFSTAIDGKIKAW 526
+ + + S ++DG I+ W
Sbjct: 188 DRG--RNVLSASLDGTIRLW 205
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 34.3 bits (77), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 30/55 (54%)
Query: 899 IGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSI 953
+G + +++ + + + + H + IT L F P+ AL+SS D QL +WS+
Sbjct: 114 LGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSV 168
Score = 33.9 bits (76), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
Query: 448 EID-AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPH 506
EID AHV + + F + L ++ D +K+W V G T GH A V +
Sbjct: 133 EIDQAHVSEITKLKFFPSGEAL--ISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAII 190
Query: 507 HKESIQFIFSTAIDGKIKAW 526
+ + + S ++DG I+ W
Sbjct: 191 DRG--RNVLSASLDGTIRLW 208
>pdb|3FFT|A Chain A, Crystal Structure Of Chey Double Mutant F14e, E89r
Complexed With Bef3- And Mn2+
pdb|3FFT|B Chain B, Crystal Structure Of Chey Double Mutant F14e, E89r
Complexed With Bef3- And Mn2+
Length = 128
Score = 34.3 bits (77), Expect = 0.41, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 7/62 (11%)
Query: 601 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRL----RFNKEGSLLAVTTSD 653
N+ A G F I W+M NM+ +L T+ ADG + A P L R KE + A
Sbjct: 43 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTARAKKENIIAAAQAGA 102
Query: 654 NG 655
+G
Sbjct: 103 SG 104
>pdb|3OLX|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88s-Bef3-Mn Complex
pdb|3OLX|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88s-Bef3-Mn Complex
Length = 129
Score = 33.9 bits (76), Expect = 0.48, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 601 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRLRFNKEG 644
N+ A G F I W+M NM+ +L T+ ADG + A P L E
Sbjct: 44 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTSEA 90
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 33.9 bits (76), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 45/115 (39%), Gaps = 17/115 (14%)
Query: 418 PDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAH------------VGGVNDIAFAHPN 465
P G LG + +H NP + + H + VN IAF HP
Sbjct: 228 PTGFALGSIEGRVAIHYI--NPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAF-HP- 283
Query: 466 KQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAID 520
+ T G D WD A K T E + P+ + C +H +I F ++++ D
Sbjct: 284 VHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNI-FAYASSYD 337
>pdb|3OLW|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88t-Bef3-Mn Complex
pdb|3OLW|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88t-Bef3-Mn Complex
Length = 129
Score = 33.9 bits (76), Expect = 0.53, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 601 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRLRFNKEG 644
N+ A G F I W+M NM+ +L T+ ADG + A P L E
Sbjct: 44 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTTEA 90
>pdb|1UDR|A Chain A, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|B Chain B, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|C Chain C, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|D Chain D, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
Length = 129
Score = 33.9 bits (76), Expect = 0.54, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 601 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRLRFNKEG 644
N+ A G F I W+M NM+ +L T+ ADG + A P L E
Sbjct: 44 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEA 90
>pdb|1D4Z|A Chain A, Crystal Structure Of Chey-95iv, A Hyperactive Chey Mutant
Length = 128
Score = 33.9 bits (76), Expect = 0.54, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 601 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRLRFNKEG 644
N+ A G F I W+M NM+ +L T+ ADG + A P L E
Sbjct: 43 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEA 89
>pdb|1HEY|A Chain A, Investigating The Structural Determinants Of The P21-Like
Triphosphate And Mg2+ Binding Site
Length = 128
Score = 33.9 bits (76), Expect = 0.55, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 601 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRLRFNKEG 644
N+ A G F I W+M NM+ +L T+ ADG + A P L E
Sbjct: 43 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEA 89
>pdb|1CEY|A Chain A, Assignments, Secondary Structure, Global Fold, And
Dynamics Of Chemotaxis Y Protein Using Three-And
Four-Dimensional Heteronuclear (13c,15n) Nmr
Spectroscopy
Length = 128
Score = 33.9 bits (76), Expect = 0.55, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 601 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRLRFNKEG 644
N+ A G F I W+M NM+ +L T+ ADG + A P L E
Sbjct: 43 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEA 89
>pdb|1EAY|A Chain A, Chey-Binding (P2) Domain Of Chea In Complex With Chey From
Escherichia Coli
pdb|1EAY|B Chain B, Chey-Binding (P2) Domain Of Chea In Complex With Chey From
Escherichia Coli
pdb|1A0O|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|E Chain E, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|G Chain G, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1BDJ|A Chain A, Complex Structure Of Hpt Domain And Chey
pdb|1F4V|A Chain A, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1F4V|B Chain B, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1F4V|C Chain C, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1FFG|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey At 2.1 A
Resolution
pdb|1FFG|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey At 2.1 A
Resolution
pdb|1FFS|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey From
Crystals Soaked In Acetyl Phosphate
pdb|1FFS|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey From
Crystals Soaked In Acetyl Phosphate
pdb|1FFW|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey With A
Bound Imido Diphosphate
pdb|1FFW|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey With A
Bound Imido Diphosphate
pdb|1FQW|A Chain A, Crystal Structure Of Activated Chey
pdb|1FQW|B Chain B, Crystal Structure Of Activated Chey
pdb|2B1J|A Chain A, Crystal Structure Of Unphosphorylated Chey Bound To The N-
Terminus Of Flim
pdb|2B1J|B Chain B, Crystal Structure Of Unphosphorylated Chey Bound To The N-
Terminus Of Flim
pdb|1CHN|A Chain A, Magnesium Binding To The Bacterial Chemotaxis Protein Chey
Results In Large Conformational Changes Involving Its
Functional Surface
pdb|3CHY|A Chain A, Crystal Structure Of Escherichia Coli Chey Refined At 1.7-
Angstrom Resolution
pdb|2LP4|Y Chain Y, Solution Structure Of P1-CheyP2 COMPLEX IN BACTERIAL
CHEMOTAXIS
Length = 128
Score = 33.9 bits (76), Expect = 0.55, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 601 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRLRFNKEG 644
N+ A G F I W+M NM+ +L T+ ADG + A P L E
Sbjct: 43 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEA 89
>pdb|1YMV|A Chain A, Signal Transduction Protein Chey Mutant With Phe 14
Replaced By Gly, Ser 15 Replaced By Gly, And Met 17
Replaced By Gly
Length = 129
Score = 33.9 bits (76), Expect = 0.55, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 601 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRLRFNKEG 644
N+ A G F I W+M NM+ +L T+ ADG + A P L E
Sbjct: 44 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEA 90
>pdb|1E6K|A Chain A, Two-Component Signal Transduction System D12a Mutant Of
Chey
Length = 130
Score = 33.9 bits (76), Expect = 0.55, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 601 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRLRFNKEG 644
N+ A G F I W+M NM+ +L T+ ADG + A P L E
Sbjct: 45 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEA 91
>pdb|1EHC|A Chain A, Structure Of Signal Transduction Protein Chey
Length = 128
Score = 33.9 bits (76), Expect = 0.55, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 601 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRLRFNKEG 644
N+ A G F I W+M NM+ +L T+ ADG + A P L E
Sbjct: 43 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEA 89
>pdb|1E6L|A Chain A, Two-Component Signal Transduction System D13a Mutant Of
Chey
Length = 127
Score = 33.9 bits (76), Expect = 0.55, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 601 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRLRFNKEG 644
N+ A G F I W+M NM+ +L T+ ADG + A P L E
Sbjct: 42 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEA 88
>pdb|1DJM|A Chain A, Solution Structure Of Bef3-Activated Chey From Escherichia
Coli
pdb|1KMI|Y Chain Y, Crystal Structure Of An E.Coli Chemotaxis Protein, Chez
Length = 129
Score = 33.9 bits (76), Expect = 0.55, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 601 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRLRFNKEG 644
N+ A G F I W+M NM+ +L T+ ADG + A P L E
Sbjct: 44 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEA 90
>pdb|2ID7|A Chain A, 1.75 A Structure Of T87i Phosphono-Chey
Length = 128
Score = 33.9 bits (76), Expect = 0.55, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 601 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRL 638
N+ A G F I W+M NM+ +L T+ ADG + A P L
Sbjct: 43 NKLQAGGYGFVISXWNMPNMDGLELLKTIRADGAMSALPVL 83
>pdb|1YMU|A Chain A, Signal Transduction Protein Chey Mutant With Met 17
Replaced By Gly (M17g)
pdb|1YMU|B Chain B, Signal Transduction Protein Chey Mutant With Met 17
Replaced By Gly (M17g)
Length = 130
Score = 33.9 bits (76), Expect = 0.56, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 601 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRLRFNKEG 644
N+ A G F I W+M NM+ +L T+ ADG + A P L E
Sbjct: 45 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEA 91
>pdb|1CYE|A Chain A, Three Dimensional Structure Of Chemotactic Che Y Protein
In Aqueous Solution By Nuclear Magnetic Resonance
Methods
Length = 129
Score = 33.9 bits (76), Expect = 0.57, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 601 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRLRFNKEG 644
N+ A G F I W+M NM+ +L T+ ADG + A P L E
Sbjct: 44 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEA 90
>pdb|2ID9|A Chain A, 1.85 A Structure Of T87iY106W PHOSPHONO-Chey
pdb|2IDM|A Chain A, 2.00 A Structure Of T87iY106W PHOSPHONO-Chey
Length = 128
Score = 33.9 bits (76), Expect = 0.57, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 601 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRL 638
N+ A G F I W+M NM+ +L T+ ADG + A P L
Sbjct: 43 NKLQAGGYGFVISXWNMPNMDGLELLKTIRADGAMSALPVL 83
>pdb|1AB5|A Chain A, Structure Of Chey Mutant F14n, V21t
pdb|1AB5|B Chain B, Structure Of Chey Mutant F14n, V21t
Length = 125
Score = 33.9 bits (76), Expect = 0.57, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 601 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRLRFNKEG 644
N+ A G F I W+M NM+ +L T+ ADG + A P L E
Sbjct: 40 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEA 86
>pdb|3OO0|A Chain A, Structure Of Apo Chey A113p
pdb|3OO0|B Chain B, Structure Of Apo Chey A113p
pdb|3OO1|A Chain A, Structure Of E. Coli Chey Mutant A113p In The Absence Of
Sulfate
pdb|3OO1|B Chain B, Structure Of E. Coli Chey Mutant A113p In The Absence Of
Sulfate
Length = 129
Score = 33.5 bits (75), Expect = 0.57, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 601 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRLRFNKEG 644
N+ A G F I W+M NM+ +L T+ ADG + A P L E
Sbjct: 44 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEA 90
>pdb|5CHY|A Chain A, Structure Of Chemotaxis Protein Chey
Length = 128
Score = 33.5 bits (75), Expect = 0.58, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 601 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRLRFNKEG 644
N+ A G F I W+M NM+ +L T+ ADG + A P L E
Sbjct: 43 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEA 89
>pdb|3MYY|A Chain A, Structure Of E. Coli Chey Mutant A113p Bound To Beryllium
Fluoride
pdb|3MYY|B Chain B, Structure Of E. Coli Chey Mutant A113p Bound To Beryllium
Fluoride
Length = 128
Score = 33.5 bits (75), Expect = 0.58, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 601 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRLRFNKEG 644
N+ A G F I W+M NM+ +L T+ ADG + A P L E
Sbjct: 43 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEA 89
>pdb|3OLY|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88m-Bef3-Mn Complex
pdb|3OLY|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88m-Bef3-Mn Complex
Length = 129
Score = 33.5 bits (75), Expect = 0.65, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 601 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRLRFNKEG 644
N+ A G F I W+M NM+ +L T+ ADG + A P L E
Sbjct: 44 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTMEA 90
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 33.5 bits (75), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 75/328 (22%), Positives = 125/328 (38%), Gaps = 56/328 (17%)
Query: 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALL 404
Q + S+DF P + ++ G++ ++++E PFK +
Sbjct: 146 QARAMNSVDFKPSRPFRIISGSDDNTVAIFE--------GPPFKF-----------KSTF 186
Query: 405 NDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTY---NPTGELRQ-HLEIDAHVGGVNDIA 460
+ V+ + PDG + + LY TG L+ AH G V +
Sbjct: 187 GEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLT 246
Query: 461 FAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESI----QFIFS 516
++ + I + DK IK+W+V + + T PV + + I Q + S
Sbjct: 247 WSPDGTK--IASASADKTIKIWNVATLKVEKTI-----PVGTRIEDQQLGIIWTKQALVS 299
Query: 517 TAIDGKIKAWLYDYLGS--RVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNE 574
+ +G I ++ LGS +V Y T ++ SADG LFS + E H+ W+
Sbjct: 300 ISANGFIN-FVNPELGSIDQVRY-GHNKAITALSSSADGKTLFSA----DAEGHINSWDI 353
Query: 575 SEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPA 634
S G R + + T + + GD F + WD + L V A G
Sbjct: 354 STGISNRVFPDVHATMI-------TGIKTTSKGDLFTVS-WD----DHLKVVPAGGSGVD 401
Query: 635 SPRLRFNKEGS--LLAVTTSDNGIKILA 660
S + NK S L ++D I + A
Sbjct: 402 SSKAVANKLSSQPLGLAVSADGDIAVAA 429
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 892 QDNNIIAIGMEDSSVQIYNV---RVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQL 948
D +A+G +DS V +Y + V EVKT + H IT +AFS LV++ ++
Sbjct: 458 NDKQFVAVGGQDSKVHVYKLSGASVSEVKTIV--HPAEITSVAFSNNGAFLVATDQSRKV 515
Query: 949 CMWSI 953
+S+
Sbjct: 516 IPYSV 520
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 10/99 (10%)
Query: 863 VSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKT---- 918
V++F FK + F + ++P D ++ A D ++ +YN VD KT
Sbjct: 172 VAIFEGPPFKFKSTFGEHTKFVHSVRYNP-DGSLFASTGGDGTIVLYN-GVDGTKTGVFE 229
Query: 919 ----KLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSI 953
K H + GL +SP + S+ AD + +W++
Sbjct: 230 DDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNV 268
>pdb|1AB6|A Chain A, Structure Of Chey Mutant F14n, V86t
pdb|1AB6|B Chain B, Structure Of Chey Mutant F14n, V86t
Length = 125
Score = 33.1 bits (74), Expect = 0.82, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 601 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRLRFNKEG 644
N+ A G F I W+M NM+ +L T+ ADG + A P L E
Sbjct: 40 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMTTAEA 86
>pdb|3OLV|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88v-Bef3-Mg Complex
pdb|3OLV|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88v-Bef3-Mg Complex
Length = 129
Score = 33.1 bits (74), Expect = 0.85, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 601 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRLRFNKEG 644
N+ A G F I W+M NM+ +L T+ ADG + A P L E
Sbjct: 44 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTVEA 90
>pdb|1VLZ|A Chain A, Uncoupled Phosphorylation And Activation In Bacterial
Chemotaxis: The 2.1 Angstrom Structure Of A Threonine To
Isoleucine Mutant At Position 87 Of Chey
pdb|1VLZ|B Chain B, Uncoupled Phosphorylation And Activation In Bacterial
Chemotaxis: The 2.1 Angstrom Structure Of A Threonine To
Isoleucine Mutant At Position 87 Of Chey
Length = 128
Score = 32.7 bits (73), Expect = 0.99, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 601 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRL 638
N+ A G F I W+M NM+ +L T+ ADG + A P L
Sbjct: 43 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVL 83
>pdb|6CHY|A Chain A, Structure Of Chemotaxis Protein Chey
pdb|6CHY|B Chain B, Structure Of Chemotaxis Protein Chey
Length = 128
Score = 32.7 bits (73), Expect = 1.0, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 601 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRL 638
N+ A G F I W+M NM+ +L T+ ADG + A P L
Sbjct: 43 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVL 83
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 32.7 bits (73), Expect = 1.1, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 9/58 (15%)
Query: 446 HLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSV 503
H ++ H+ V+D F ++C +D +IK+ D G T+EGHE+ VY +
Sbjct: 183 HNDVVRHLAVVDDGHF---------ISCSNDGLIKLVDXHTGDVLRTYEGHESFVYCI 231
>pdb|3FGZ|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89r
Complexed With Bef3- And Mn2+
pdb|3FGZ|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89r
Complexed With Bef3- And Mn2+
Length = 128
Score = 32.7 bits (73), Expect = 1.2, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 7/62 (11%)
Query: 601 NRFLAAGDEFQIKFW---DMDNMNMLTTVDADGGLPASPRL----RFNKEGSLLAVTTSD 653
N+ A G F I W +MD + +L T+ ADG + A P L R KE + A
Sbjct: 43 NKLQAGGYGFVISDWMMPNMDGLELLKTIRADGAMSALPVLMVTARAKKENIIAAAQAGA 102
Query: 654 NG 655
+G
Sbjct: 103 SG 104
>pdb|1MIH|A Chain A, A Role For Chey Glu 89 In Chez-Mediated Dephosphorylation
Of The E. Coli Chemotaxis Response Regulator Chey
pdb|1MIH|B Chain B, A Role For Chey Glu 89 In Chez-Mediated Dephosphorylation
Of The E. Coli Chemotaxis Response Regulator Chey
Length = 129
Score = 32.7 bits (73), Expect = 1.3, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 601 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRLRFNKEG 644
N+ A G F I W M NM+ +L T+ ADG + A P L E
Sbjct: 44 NKLQAGGYGFVISDWRMPNMDGLELLKTIRADGAMSALPVLMVTAEA 90
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 58/268 (21%), Positives = 100/268 (37%), Gaps = 49/268 (18%)
Query: 389 VWDISAASMPLQNALL-NDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHL 447
VW+ + S+ +AL D + V W DG L V +V +Y +LR
Sbjct: 117 VWNADSGSV---SALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMA 173
Query: 448 EIDAHVGGV------------------NDIAFAHP--------NKQLC----------IV 471
A VG + +D+ A+ + ++C +
Sbjct: 174 GHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLA 233
Query: 472 TCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSV--CPHHKESIQFIFSTAIDGKIKAWLYD 529
+ G+D ++++WD + ++T H A V +V CP + T +D +I W
Sbjct: 234 SGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGT-MDKQIHFW-NA 291
Query: 530 YLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS--GFR 587
G+RV+ G+ T + +S + S T +++L W+ S + +
Sbjct: 292 ATGARVNTVDAGSQVTSLIWSPHSKEIMS--THGFPDNNLSIWSYSSSGLTKQVDIPAHD 349
Query: 588 KRSLGVVQFDTTRNRFLAAGDEFQIKFW 615
R L R AA DE +KFW
Sbjct: 350 TRVLYSALSPDGRILSTAASDE-NLKFW 376
>pdb|3FFW|A Chain A, Crystal Structure Of Chey Triple Mutant F14q, N59k, E89y
Complexed With Bef3- And Mn2+
pdb|3FFW|B Chain B, Crystal Structure Of Chey Triple Mutant F14q, N59k, E89y
Complexed With Bef3- And Mn2+
Length = 128
Score = 32.0 bits (71), Expect = 1.8, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 601 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRL 638
N+ A G F I W M NM+ +L T+ ADG + A P L
Sbjct: 43 NKLQAGGYGFVISDWKMPNMDGLELLKTIRADGAMSALPVL 83
>pdb|3FFX|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59r, E89h
Complexed With Bef3- And Mn2+
pdb|3FFX|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59r, E89h
Complexed With Bef3- And Mn2+
Length = 128
Score = 31.6 bits (70), Expect = 2.3, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 601 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRL 638
N+ A G F I W M NM+ +L T+ ADG + A P L
Sbjct: 43 NKLQAGGYGFVISDWRMPNMDGLELLKTIRADGAMSALPVL 83
>pdb|3F7N|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89l
Complexed With Bef3- And Mn2+
pdb|3F7N|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89l
Complexed With Bef3- And Mn2+
Length = 128
Score = 31.2 bits (69), Expect = 2.9, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 601 NRFLAAGDEFQIKFW---DMDNMNMLTTVDADGGLPASPRL 638
N+ A G F I W +MD + +L T+ ADG + A P L
Sbjct: 43 NKLQAGGYGFVISDWMMPNMDGLELLKTIRADGAMSALPVL 83
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 349 VMSMDFHPQQQTILLVGTNVGDISLWE 375
V S+++HP T + VG+ GDI LW+
Sbjct: 75 VTSLEWHPTHPTTVAVGSKGGDIILWD 101
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 30.4 bits (67), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 349 VMSMDFHPQQQTILLVGTNVGDISLWE 375
V S+++HP T + VG+ GDI LW+
Sbjct: 76 VTSLEWHPTHPTTVAVGSKGGDIILWD 102
>pdb|3R0Q|C Chain C, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
pdb|3R0Q|G Chain G, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
pdb|3R0Q|A Chain A, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
pdb|3R0Q|E Chain E, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
Length = 376
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 329 VYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLW--EVGSRERLAHKP 386
+Y Q D+ VR + V H + +T+L VGT G +++W + G+R+ A +
Sbjct: 35 LYHQKDMLSDRVRMDAYFNAVFQNKHHFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEA 94
Query: 387 FKVWDISAASMPLQN 401
K+ D + A + N
Sbjct: 95 TKMADHARALVKANN 109
>pdb|3GBS|A Chain A, Crystal Structure Of Aspergillus Oryzae Cutinase
Length = 197
Score = 30.0 bits (66), Expect = 7.3, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 35/80 (43%), Gaps = 9/80 (11%)
Query: 531 LGSRVDYDAPGNWC---TMMAYSADGTRLFSCGTSKEGESHLVEWNESEG------AIKR 581
+G R D P N T A A+ LF SK ++ +V S+G AIKR
Sbjct: 63 VGPRYTADLPSNALPEGTSQAAIAEAQGLFEQAVSKCPDTQIVAGGYSQGTAVMNGAIKR 122
Query: 582 TYSGFRKRSLGVVQFDTTRN 601
+ + + GVV F TRN
Sbjct: 123 LSADVQDKIKGVVLFGYTRN 142
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 29.6 bits (65), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 26/48 (54%)
Query: 920 LKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAP 967
L+GH ++ L ++P N +VS+ D +L +W+ +K + + P
Sbjct: 62 LQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCP 109
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,939,377
Number of Sequences: 62578
Number of extensions: 1322623
Number of successful extensions: 3940
Number of sequences better than 100.0: 137
Number of HSP's better than 100.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 64
Number of HSP's that attempted gapping in prelim test: 3192
Number of HSP's gapped (non-prelim): 589
length of query: 1071
length of database: 14,973,337
effective HSP length: 109
effective length of query: 962
effective length of database: 8,152,335
effective search space: 7842546270
effective search space used: 7842546270
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)