Query 001477
Match_columns 1071
No_of_seqs 871 out of 5068
Neff 10.7
Searched_HMMs 46136
Date Fri Mar 29 01:48:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001477.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001477hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0293 WD40 repeat-containing 100.0 8.4E-69 1.8E-73 526.6 36.0 490 5-663 17-514 (519)
2 KOG0275 Conserved WD40 repeat- 100.0 4.4E-66 9.5E-71 491.0 32.8 488 5-660 7-507 (508)
3 KOG0319 WD40-repeat-containing 100.0 2.7E-58 5.9E-63 486.5 46.7 575 352-1048 25-620 (775)
4 KOG0319 WD40-repeat-containing 100.0 9.4E-54 2E-58 452.2 43.8 573 318-1002 25-618 (775)
5 KOG0318 WD40 repeat stress pro 100.0 2.8E-51 6.2E-56 416.2 59.4 555 322-1047 36-602 (603)
6 KOG0291 WD40-repeat-containing 100.0 2.6E-50 5.7E-55 425.9 58.2 538 320-1066 30-631 (893)
7 KOG0291 WD40-repeat-containing 100.0 2.5E-49 5.5E-54 418.5 56.1 592 314-1060 57-722 (893)
8 KOG0318 WD40 repeat stress pro 100.0 2.1E-48 4.6E-53 395.4 58.2 534 352-1052 24-565 (603)
9 KOG0306 WD40-repeat-containing 100.0 2.5E-49 5.4E-54 418.3 49.6 502 345-1050 64-667 (888)
10 KOG0271 Notchless-like WD40 re 100.0 6.9E-51 1.5E-55 396.8 30.3 367 404-952 111-479 (480)
11 KOG0271 Notchless-like WD40 re 100.0 2.2E-49 4.7E-54 386.3 28.5 289 342-664 110-441 (480)
12 KOG0306 WD40-repeat-containing 100.0 1.4E-44 2.9E-49 382.5 43.6 511 295-955 45-665 (888)
13 KOG0263 Transcription initiati 100.0 3.3E-41 7.2E-46 362.2 37.0 554 3-620 19-651 (707)
14 KOG1408 WD40 repeat protein [F 100.0 5.6E-40 1.2E-44 344.3 41.6 587 351-1048 42-714 (1080)
15 KOG0272 U4/U6 small nuclear ri 100.0 6.8E-42 1.5E-46 339.3 23.0 282 345-660 174-458 (459)
16 KOG0273 Beta-transducin family 100.0 2.2E-40 4.8E-45 332.9 33.7 308 336-664 168-484 (524)
17 KOG1063 RNA polymerase II elon 100.0 6E-39 1.3E-43 337.4 43.8 594 326-1047 33-763 (764)
18 KOG0286 G-protein beta subunit 100.0 3.1E-39 6.7E-44 305.1 33.5 292 339-660 47-343 (343)
19 KOG0272 U4/U6 small nuclear ri 100.0 6E-41 1.3E-45 332.6 23.0 255 406-673 173-428 (459)
20 KOG0276 Vesicle coat complex C 100.0 2.6E-38 5.6E-43 327.9 43.3 476 345-1003 12-490 (794)
21 KOG0279 G protein beta subunit 100.0 3.3E-38 7.1E-43 296.6 32.7 298 338-662 6-313 (315)
22 KOG1408 WD40 repeat protein [F 100.0 1.6E-37 3.5E-42 325.9 41.6 500 345-955 77-714 (1080)
23 KOG1539 WD repeat protein [Gen 100.0 2.9E-36 6.4E-41 323.8 51.3 569 352-1046 39-647 (910)
24 KOG1539 WD repeat protein [Gen 100.0 2.5E-36 5.5E-41 324.3 48.9 561 345-1002 75-647 (910)
25 KOG1063 RNA polymerase II elon 100.0 4.2E-36 9.1E-41 316.1 43.4 541 352-1047 20-699 (764)
26 KOG0276 Vesicle coat complex C 100.0 6.2E-36 1.3E-40 310.3 43.4 464 404-1046 9-489 (794)
27 KOG0286 G-protein beta subunit 100.0 2.7E-37 5.9E-42 292.0 30.2 248 404-664 51-305 (343)
28 KOG0292 Vesicle coat complex C 100.0 4.7E-35 1E-39 315.1 46.1 554 346-1051 9-598 (1202)
29 KOG0315 G-protein beta subunit 100.0 1.4E-36 3.1E-41 280.2 28.4 286 358-676 9-301 (311)
30 KOG2106 Uncharacterized conser 100.0 1.6E-33 3.6E-38 285.3 51.0 528 348-1046 67-625 (626)
31 KOG0292 Vesicle coat complex C 100.0 2.4E-34 5.1E-39 309.8 45.3 483 404-1053 5-581 (1202)
32 KOG0296 Angio-associated migra 100.0 4.7E-35 1E-39 285.6 35.6 339 448-954 59-398 (399)
33 KOG0295 WD40 repeat-containing 100.0 3.6E-36 7.8E-41 293.0 26.9 310 319-661 81-405 (406)
34 KOG0279 G protein beta subunit 100.0 5.5E-35 1.2E-39 274.9 30.9 253 404-670 11-269 (315)
35 KOG0284 Polyadenylation factor 100.0 1.2E-36 2.7E-41 300.4 20.6 284 345-662 95-380 (464)
36 KOG0315 G-protein beta subunit 100.0 8.4E-35 1.8E-39 268.5 31.2 295 512-933 11-309 (311)
37 KOG0285 Pleiotropic regulator 100.0 7.5E-35 1.6E-39 282.4 26.0 294 336-663 140-440 (460)
38 KOG0273 Beta-transducin family 100.0 3.3E-34 7.1E-39 288.5 31.0 281 345-662 234-523 (524)
39 KOG0296 Angio-associated migra 100.0 2.3E-33 4.9E-38 273.9 34.6 329 404-912 60-398 (399)
40 KOG0265 U5 snRNP-specific prot 100.0 4.4E-34 9.6E-39 271.6 27.1 283 345-659 46-335 (338)
41 KOG0645 WD40 repeat protein [G 100.0 3.8E-33 8.2E-38 261.3 32.6 291 340-662 7-311 (312)
42 KOG2106 Uncharacterized conser 100.0 3.3E-32 7.2E-37 275.9 41.3 495 295-953 87-625 (626)
43 KOG0295 WD40 repeat-containing 100.0 1.9E-33 4.1E-38 274.1 27.7 305 488-953 99-405 (406)
44 KOG0285 Pleiotropic regulator 100.0 1.5E-33 3.2E-38 273.4 24.7 246 403-664 146-391 (460)
45 KOG2048 WD40 repeat protein [G 100.0 3.3E-30 7.1E-35 271.8 49.6 500 408-1050 25-551 (691)
46 KOG0266 WD40 repeat-containing 100.0 1.4E-32 3E-37 309.5 33.5 286 345-662 158-454 (456)
47 KOG0265 U5 snRNP-specific prot 100.0 9.9E-33 2.2E-37 262.4 25.9 252 402-664 41-298 (338)
48 KOG0316 Conserved WD40 repeat- 100.0 1.4E-32 3.1E-37 251.5 25.0 287 338-661 8-298 (307)
49 KOG0293 WD40 repeat-containing 100.0 2.7E-32 5.9E-37 269.6 26.1 293 403-913 219-514 (519)
50 KOG2048 WD40 repeat protein [G 100.0 8.8E-29 1.9E-33 261.1 53.4 544 345-1047 24-601 (691)
51 KOG0263 Transcription initiati 100.0 8.6E-33 1.9E-37 297.7 23.6 246 408-664 378-651 (707)
52 KOG1445 Tumor-specific antigen 100.0 3.7E-31 8E-36 274.6 34.7 653 339-1055 71-853 (1012)
53 KOG0282 mRNA splicing factor [ 100.0 4.5E-33 9.7E-38 281.9 18.0 292 336-660 203-503 (503)
54 KOG0284 Polyadenylation factor 100.0 3.5E-33 7.7E-38 276.0 16.7 240 408-662 96-337 (464)
55 KOG0281 Beta-TrCP (transducin 100.0 6.4E-33 1.4E-37 267.6 16.8 273 346-664 197-479 (499)
56 KOG0645 WD40 repeat protein [G 100.0 1.5E-30 3.3E-35 244.0 31.0 242 404-662 10-261 (312)
57 KOG0282 mRNA splicing factor [ 100.0 2.1E-32 4.5E-37 277.0 20.0 292 445-910 206-503 (503)
58 cd00200 WD40 WD40 domain, foun 100.0 1.4E-30 3.1E-35 282.1 36.0 282 345-660 8-289 (289)
59 KOG0266 WD40 repeat-containing 100.0 2.7E-30 5.8E-35 291.0 33.0 258 407-674 158-420 (456)
60 KOG0316 Conserved WD40 repeat- 100.0 1.2E-30 2.5E-35 239.1 20.6 256 401-673 10-267 (307)
61 PLN00181 protein SPA1-RELATED; 100.0 3E-29 6.5E-34 305.8 39.8 291 345-661 482-792 (793)
62 KOG0281 Beta-TrCP (transducin 100.0 2.7E-31 5.9E-36 256.4 15.6 232 407-664 196-430 (499)
63 KOG0973 Histone transcription 100.0 4.2E-28 9.2E-33 271.0 42.6 305 346-664 13-357 (942)
64 cd00200 WD40 WD40 domain, foun 100.0 6.2E-29 1.3E-33 269.2 34.7 247 404-664 5-251 (289)
65 KOG0278 Serine/threonine kinas 100.0 1.4E-30 3.1E-35 240.4 18.1 285 343-664 11-299 (334)
66 KOG0641 WD40 repeat protein [G 100.0 3.5E-28 7.7E-33 220.9 32.1 313 336-662 22-349 (350)
67 PLN00181 protein SPA1-RELATED; 100.0 1.7E-28 3.8E-33 299.1 37.9 271 368-664 457-740 (793)
68 KOG0310 Conserved WD40 repeat- 100.0 5.5E-29 1.2E-33 253.0 27.3 282 345-660 25-307 (487)
69 KOG0275 Conserved WD40 repeat- 100.0 2.5E-30 5.4E-35 247.3 16.6 285 246-616 218-507 (508)
70 KOG0288 WD40 repeat protein Ti 100.0 4.3E-30 9.4E-35 254.8 18.3 294 333-659 161-458 (459)
71 KOG0313 Microtubule binding pr 100.0 5.5E-29 1.2E-33 244.4 25.5 291 334-661 93-417 (423)
72 KOG0278 Serine/threonine kinas 100.0 1.1E-29 2.4E-34 234.6 17.1 292 533-958 6-301 (334)
73 KOG0643 Translation initiation 100.0 2.4E-28 5.1E-33 228.5 23.5 286 343-664 7-319 (327)
74 KOG0643 Translation initiation 100.0 2.6E-27 5.6E-32 221.6 29.8 235 403-653 5-252 (327)
75 KOG1446 Histone H3 (Lys4) meth 100.0 9.4E-27 2E-31 224.8 32.4 281 346-662 14-303 (311)
76 PTZ00421 coronin; Provisional 100.0 7E-27 1.5E-31 260.8 35.5 287 347-644 21-315 (493)
77 KOG1407 WD40 repeat protein [F 100.0 8.1E-27 1.7E-31 217.7 29.1 274 345-653 19-293 (313)
78 KOG0647 mRNA export protein (c 100.0 3.6E-27 7.7E-32 224.8 27.1 274 346-652 27-313 (347)
79 KOG0277 Peroxisomal targeting 100.0 8.1E-28 1.8E-32 223.3 22.0 284 350-661 12-308 (311)
80 KOG1445 Tumor-specific antigen 100.0 3.2E-26 6.9E-31 238.2 35.9 616 403-1050 74-801 (1012)
81 KOG1407 WD40 repeat protein [F 100.0 7.5E-27 1.6E-31 217.9 27.3 277 448-904 15-294 (313)
82 KOG0305 Anaphase promoting com 100.0 2.7E-27 5.9E-32 252.1 27.8 279 349-664 180-463 (484)
83 KOG0640 mRNA cleavage stimulat 100.0 1.8E-27 4E-32 226.8 23.0 313 336-661 102-425 (430)
84 KOG0313 Microtubule binding pr 100.0 5.1E-27 1.1E-31 230.7 25.9 282 451-911 103-417 (423)
85 KOG0283 WD40 repeat-containing 100.0 1.9E-27 4.1E-32 259.3 25.1 300 345-664 266-578 (712)
86 KOG0274 Cdc4 and related F-box 100.0 9.2E-27 2E-31 259.5 30.0 283 345-671 207-490 (537)
87 KOG0640 mRNA cleavage stimulat 100.0 2.8E-27 6E-32 225.5 22.0 253 404-664 108-385 (430)
88 KOG1446 Histone H3 (Lys4) meth 100.0 2.2E-25 4.7E-30 215.4 35.0 295 488-955 5-304 (311)
89 KOG0277 Peroxisomal targeting 100.0 4.9E-27 1.1E-31 218.1 19.9 256 334-617 48-308 (311)
90 KOG0299 U3 snoRNP-associated p 100.0 3.4E-26 7.3E-31 230.9 26.9 286 344-651 140-444 (479)
91 KOG0305 Anaphase promoting com 100.0 2.5E-26 5.5E-31 244.7 27.0 261 329-620 199-463 (484)
92 KOG0283 WD40 repeat-containing 99.9 2.9E-26 6.3E-31 250.0 26.4 272 770-1049 265-578 (712)
93 KOG0288 WD40 repeat protein Ti 99.9 5.3E-27 1.1E-31 233.0 17.4 247 404-664 171-419 (459)
94 KOG0772 Uncharacterized conser 99.9 4.1E-26 9E-31 232.5 24.2 302 336-661 156-486 (641)
95 PTZ00420 coronin; Provisional 99.9 6.4E-25 1.4E-29 245.4 36.2 256 365-644 50-318 (568)
96 KOG0772 Uncharacterized conser 99.9 1.3E-25 2.8E-30 228.9 27.1 297 491-911 161-486 (641)
97 KOG2096 WD40 repeat protein [G 99.9 3E-25 6.6E-30 212.7 27.9 253 774-1045 134-400 (420)
98 PTZ00421 coronin; Provisional 99.9 3.2E-25 7E-30 247.6 33.0 250 407-664 19-292 (493)
99 KOG0300 WD40 repeat-containing 99.9 3.5E-26 7.7E-31 218.5 21.1 331 578-1049 139-478 (481)
100 KOG1274 WD40 repeat protein [G 99.9 5.3E-22 1.1E-26 217.5 55.0 276 345-659 12-297 (933)
101 KOG0289 mRNA splicing factor [ 99.9 4E-25 8.6E-30 220.9 28.0 282 347-661 220-505 (506)
102 KOG0301 Phospholipase A2-activ 99.9 2.7E-25 5.8E-30 235.2 28.2 283 337-663 4-289 (745)
103 KOG0268 Sof1-like rRNA process 99.9 9.3E-27 2E-31 227.2 15.7 289 338-664 57-347 (433)
104 KOG0308 Conserved WD40 repeat- 99.9 7.2E-26 1.6E-30 237.5 23.3 286 351-662 29-327 (735)
105 KOG0274 Cdc4 and related F-box 99.9 2.6E-25 5.6E-30 247.9 28.9 236 407-664 207-443 (537)
106 KOG0289 mRNA splicing factor [ 99.9 6.8E-25 1.5E-29 219.2 28.6 281 634-1046 221-505 (506)
107 KOG1036 Mitotic spindle checkp 99.9 8.7E-25 1.9E-29 209.9 28.0 268 346-652 13-294 (323)
108 KOG0308 Conserved WD40 repeat- 99.9 4.2E-26 9.2E-31 239.2 19.7 242 413-664 29-287 (735)
109 KOG0310 Conserved WD40 repeat- 99.9 2E-25 4.4E-30 227.2 23.9 252 334-619 55-310 (487)
110 KOG0300 WD40 repeat-containing 99.9 2.2E-25 4.8E-30 213.0 22.2 297 337-664 138-478 (481)
111 KOG0299 U3 snoRNP-associated p 99.9 2.5E-25 5.5E-30 224.6 23.5 251 404-665 138-413 (479)
112 KOG0294 WD40 repeat-containing 99.9 1.8E-24 3.9E-29 207.8 27.0 244 403-664 38-283 (362)
113 KOG0268 Sof1-like rRNA process 99.9 6.9E-26 1.5E-30 221.2 16.9 286 448-872 61-348 (433)
114 KOG0647 mRNA export protein (c 99.9 3E-24 6.4E-29 205.0 25.6 248 406-664 25-283 (347)
115 KOG1332 Vesicle coat complex C 99.9 4E-25 8.6E-30 204.3 18.9 252 404-662 7-286 (299)
116 PTZ00420 coronin; Provisional 99.9 1.1E-23 2.5E-28 235.4 33.8 228 426-664 50-295 (568)
117 KOG0264 Nucleosome remodeling 99.9 1.4E-24 3.1E-29 219.7 23.5 267 338-619 116-405 (422)
118 KOG0973 Histone transcription 99.9 2.9E-24 6.3E-29 240.5 26.9 249 406-664 11-314 (942)
119 KOG2096 WD40 repeat protein [G 99.9 8.8E-24 1.9E-28 202.7 24.7 219 402-663 80-309 (420)
120 KOG0641 WD40 repeat protein [G 99.9 1.6E-22 3.5E-27 184.2 29.9 246 771-1047 88-349 (350)
121 KOG0639 Transducin-like enhanc 99.9 4.2E-24 9.1E-29 216.8 21.0 293 338-661 411-703 (705)
122 KOG0294 WD40 repeat-containing 99.9 1.9E-22 4.1E-27 193.9 30.6 282 469-932 3-305 (362)
123 KOG1963 WD40 repeat protein [G 99.9 3.6E-21 7.9E-26 210.9 44.6 503 350-1002 20-582 (792)
124 KOG4283 Transcription-coupled 99.9 4.7E-23 1E-27 195.6 25.4 300 345-661 42-364 (397)
125 KOG1963 WD40 repeat protein [G 99.9 9.6E-22 2.1E-26 215.4 39.5 510 413-1054 21-590 (792)
126 KOG0646 WD40 repeat protein [G 99.9 8.6E-23 1.9E-27 206.9 25.9 293 566-988 17-333 (476)
127 KOG0301 Phospholipase A2-activ 99.9 8.3E-23 1.8E-27 216.6 26.8 281 578-1003 5-288 (745)
128 KOG1538 Uncharacterized conser 99.9 3.9E-22 8.5E-27 209.2 30.4 273 348-663 14-294 (1081)
129 KOG1273 WD40 repeat protein [G 99.9 1.9E-22 4.2E-27 193.4 25.3 294 336-664 14-324 (405)
130 KOG1274 WD40 repeat protein [G 99.9 1.1E-19 2.3E-24 199.6 49.7 246 405-663 10-263 (933)
131 KOG1036 Mitotic spindle checkp 99.9 3.1E-22 6.6E-27 192.5 26.2 241 407-664 12-264 (323)
132 KOG1332 Vesicle coat complex C 99.9 3.2E-23 6.9E-28 191.8 18.3 252 345-619 10-287 (299)
133 KOG0264 Nucleosome remodeling 99.9 7.6E-23 1.7E-27 207.3 22.6 252 405-663 121-405 (422)
134 KOG4328 WD40 protein [Function 99.9 2.2E-22 4.8E-27 203.1 25.3 301 339-662 178-495 (498)
135 KOG2055 WD40 repeat protein [G 99.9 2.1E-22 4.6E-27 203.4 24.9 288 346-662 213-512 (514)
136 KOG0646 WD40 repeat protein [G 99.9 1.9E-22 4.1E-27 204.5 24.5 225 407-643 80-330 (476)
137 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 5.4E-21 1.2E-25 208.4 37.0 216 844-1069 76-299 (300)
138 KOG2055 WD40 repeat protein [G 99.9 2.6E-22 5.7E-27 202.7 23.4 290 496-912 212-512 (514)
139 KOG0639 Transducin-like enhanc 99.9 1.1E-22 2.4E-27 206.6 20.8 283 538-953 416-703 (705)
140 KOG1273 WD40 repeat protein [G 99.9 2.5E-22 5.5E-27 192.6 20.9 253 411-675 26-292 (405)
141 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 3.2E-20 6.9E-25 202.3 40.3 292 469-934 3-300 (300)
142 KOG0267 Microtubule severing p 99.9 8.8E-24 1.9E-28 224.6 11.0 236 404-653 24-259 (825)
143 KOG0650 WD40 repeat nucleolar 99.9 2E-21 4.3E-26 202.2 27.8 316 448-951 395-732 (733)
144 KOG0321 WD40 repeat-containing 99.9 7.8E-22 1.7E-26 207.0 21.4 437 407-1050 46-534 (720)
145 KOG0269 WD40 repeat-containing 99.9 7.6E-22 1.7E-26 211.8 20.1 297 346-664 39-342 (839)
146 KOG4283 Transcription-coupled 99.9 2.2E-20 4.8E-25 177.6 26.0 214 405-623 40-281 (397)
147 KOG0270 WD40 repeat-containing 99.9 8.9E-21 1.9E-25 191.1 24.4 247 419-671 191-458 (463)
148 KOG0269 WD40 repeat-containing 99.9 6.3E-22 1.4E-26 212.4 16.4 248 348-620 89-342 (839)
149 KOG0321 WD40 repeat-containing 99.9 7.7E-21 1.7E-25 199.7 22.9 291 350-664 53-393 (720)
150 KOG0650 WD40 repeat nucleolar 99.9 1.4E-20 2.9E-25 196.1 24.2 291 337-659 390-732 (733)
151 KOG2445 Nuclear pore complex c 99.9 1.1E-19 2.4E-24 174.4 26.5 255 404-662 9-318 (361)
152 KOG1009 Chromatin assembly com 99.9 7.8E-20 1.7E-24 182.3 26.2 303 346-664 13-374 (434)
153 KOG0307 Vesicle coat complex C 99.9 1.8E-21 3.8E-26 219.3 15.3 251 408-664 64-329 (1049)
154 KOG0267 Microtubule severing p 99.9 6E-22 1.3E-26 210.8 10.9 233 345-609 27-259 (825)
155 KOG1538 Uncharacterized conser 99.9 1.6E-19 3.4E-24 189.8 26.7 268 314-619 14-294 (1081)
156 KOG1034 Transcriptional repres 99.9 1.1E-19 2.4E-24 176.0 23.1 290 345-662 37-383 (385)
157 KOG4378 Nuclear protein COP1 [ 99.9 5.2E-20 1.1E-24 187.2 21.8 215 777-1029 84-305 (673)
158 KOG2445 Nuclear pore complex c 99.9 4.8E-19 1E-23 170.1 26.1 253 345-619 12-319 (361)
159 KOG2919 Guanine nucleotide-bin 99.8 2E-19 4.4E-24 173.5 22.6 289 348-653 51-361 (406)
160 COG2319 FOG: WD40 repeat [Gene 99.8 4.5E-17 9.7E-22 188.6 46.9 371 404-955 61-443 (466)
161 KOG4328 WD40 protein [Function 99.8 2.5E-19 5.5E-24 181.2 23.5 209 448-662 181-399 (498)
162 KOG4497 Uncharacterized conser 99.8 3.2E-19 7E-24 172.4 22.9 408 413-947 13-425 (447)
163 KOG0302 Ribosome Assembly prot 99.8 2.1E-19 4.6E-24 177.1 21.4 268 336-615 141-435 (440)
164 KOG1034 Transcriptional repres 99.8 8.9E-19 1.9E-23 169.7 24.4 337 403-868 33-382 (385)
165 COG2319 FOG: WD40 repeat [Gene 99.8 2.1E-16 4.6E-21 182.9 49.2 290 343-664 62-361 (466)
166 KOG0302 Ribosome Assembly prot 99.8 1.1E-18 2.3E-23 172.2 22.2 248 404-659 147-435 (440)
167 KOG0270 WD40 repeat-containing 99.8 3.9E-19 8.5E-24 179.4 19.5 263 347-623 174-454 (463)
168 KOG0307 Vesicle coat complex C 99.8 1.9E-19 4E-24 203.2 16.4 263 338-621 56-330 (1049)
169 KOG1912 WD40 repeat protein [G 99.8 2.1E-16 4.5E-21 169.9 38.6 468 408-958 15-555 (1062)
170 KOG4378 Nuclear protein COP1 [ 99.8 9.1E-19 2E-23 178.3 19.7 287 368-684 11-302 (673)
171 KOG0303 Actin-binding protein 99.8 3.1E-18 6.7E-23 169.9 22.0 218 440-664 68-296 (472)
172 KOG1009 Chromatin assembly com 99.8 1.1E-17 2.5E-22 167.0 26.1 150 408-561 13-185 (434)
173 KOG1912 WD40 repeat protein [G 99.8 4.9E-17 1.1E-21 174.6 32.3 624 347-1050 16-744 (1062)
174 KOG1524 WD40 repeat-containing 99.8 4.5E-17 9.8E-22 167.6 29.2 491 406-1050 12-526 (737)
175 KOG0303 Actin-binding protein 99.8 7.8E-18 1.7E-22 167.1 22.0 234 403-643 76-320 (472)
176 KOG1524 WD40 repeat-containing 99.8 6.3E-17 1.4E-21 166.6 27.6 270 345-660 13-284 (737)
177 KOG2919 Guanine nucleotide-bin 99.8 4.6E-17 9.9E-22 157.5 23.5 245 341-609 99-361 (406)
178 KOG0322 G-protein beta subunit 99.8 8.1E-18 1.8E-22 158.1 17.6 308 533-953 6-322 (323)
179 KOG1310 WD40 repeat protein [G 99.8 4.1E-17 8.8E-22 168.5 24.4 240 403-671 45-312 (758)
180 KOG0290 Conserved WD40 repeat- 99.8 1.5E-16 3.2E-21 151.7 24.3 290 339-658 37-361 (364)
181 KOG1188 WD40 repeat protein [G 99.8 1.4E-17 3.1E-22 162.6 17.0 292 469-801 42-345 (376)
182 KOG0322 G-protein beta subunit 99.8 1.7E-17 3.7E-22 155.9 16.4 289 339-661 6-322 (323)
183 PRK11028 6-phosphogluconolacto 99.8 3.5E-16 7.5E-21 171.5 29.3 274 741-1047 8-304 (330)
184 KOG4227 WD40 repeat protein [G 99.8 1.1E-16 2.5E-21 158.1 22.4 293 344-661 54-386 (609)
185 KOG1188 WD40 repeat protein [G 99.8 7.8E-17 1.7E-21 157.5 20.3 273 360-662 41-346 (376)
186 KOG0644 Uncharacterized conser 99.7 5.9E-18 1.3E-22 183.0 13.0 278 343-664 187-470 (1113)
187 KOG0642 Cell-cycle nuclear pro 99.7 1.7E-17 3.6E-22 172.9 15.7 251 404-664 290-563 (577)
188 KOG1007 WD repeat protein TSSC 99.7 2.3E-16 5E-21 150.2 21.8 255 345-618 62-361 (370)
189 KOG4497 Uncharacterized conser 99.7 1.1E-16 2.3E-21 155.1 19.7 398 458-994 13-422 (447)
190 KOG0649 WD40 repeat protein [G 99.7 6.2E-16 1.3E-20 143.6 23.9 258 774-1057 12-283 (325)
191 KOG1007 WD repeat protein TSSC 99.7 7.8E-17 1.7E-21 153.4 18.0 216 336-575 111-361 (370)
192 KOG1587 Cytoplasmic dynein int 99.7 3.5E-16 7.7E-21 173.1 25.4 273 326-619 223-517 (555)
193 KOG0642 Cell-cycle nuclear pro 99.7 2.5E-17 5.4E-22 171.7 15.1 266 342-628 289-571 (577)
194 KOG1334 WD40 repeat protein [G 99.7 3.1E-17 6.8E-22 167.4 15.1 298 340-664 135-468 (559)
195 KOG0649 WD40 repeat protein [G 99.7 1.6E-15 3.5E-20 140.9 24.4 281 348-659 12-313 (325)
196 KOG1587 Cytoplasmic dynein int 99.7 2.9E-15 6.3E-20 165.9 27.5 250 407-664 241-518 (555)
197 KOG2110 Uncharacterized conser 99.7 2.8E-14 6E-19 141.6 30.9 240 408-664 5-250 (391)
198 PRK11028 6-phosphogluconolacto 99.7 2E-14 4.3E-19 157.6 33.0 267 324-618 11-304 (330)
199 KOG0290 Conserved WD40 repeat- 99.7 1.7E-15 3.7E-20 144.6 20.8 259 329-607 77-355 (364)
200 KOG4227 WD40 repeat protein [G 99.7 2.9E-15 6.3E-20 148.3 22.8 300 536-955 51-388 (609)
201 KOG1517 Guanine nucleotide bin 99.7 5.1E-15 1.1E-19 164.9 27.1 197 851-1050 1177-1384(1387)
202 KOG0771 Prolactin regulatory e 99.7 4E-16 8.6E-21 157.7 14.9 198 844-1048 148-355 (398)
203 KOG0644 Uncharacterized conser 99.7 1.3E-16 2.9E-21 172.8 12.0 291 577-959 180-473 (1113)
204 KOG0771 Prolactin regulatory e 99.7 1E-14 2.2E-19 147.6 23.4 201 592-913 148-355 (398)
205 COG4946 Uncharacterized protei 99.7 7.9E-12 1.7E-16 127.7 43.6 198 840-1048 401-655 (668)
206 KOG1517 Guanine nucleotide bin 99.7 1.2E-14 2.5E-19 162.0 25.1 291 348-664 1066-1383(1387)
207 PRK01742 tolB translocation pr 99.7 8.8E-15 1.9E-19 165.1 24.8 235 368-643 183-426 (429)
208 PF02239 Cytochrom_D1: Cytochr 99.7 3E-13 6.5E-18 146.8 34.1 334 468-963 7-356 (369)
209 KOG1523 Actin-related protein 99.7 1.6E-14 3.4E-19 140.3 21.1 237 346-609 10-269 (361)
210 KOG1240 Protein kinase contain 99.7 3.9E-14 8.4E-19 160.7 27.5 255 404-664 1044-1336(1431)
211 PF02239 Cytochrom_D1: Cytochr 99.6 9.2E-13 2E-17 143.0 36.2 274 512-958 6-306 (369)
212 KOG2321 WD40 repeat protein [G 99.6 3.7E-14 8E-19 148.0 21.7 287 338-663 43-344 (703)
213 KOG1240 Protein kinase contain 99.6 1.1E-13 2.5E-18 157.0 26.3 270 335-620 1036-1336(1431)
214 KOG2110 Uncharacterized conser 99.6 2.9E-12 6.2E-17 127.5 32.5 281 347-663 6-331 (391)
215 PRK01742 tolB translocation pr 99.6 3.6E-14 7.8E-19 160.2 21.8 234 328-599 185-426 (429)
216 KOG1334 WD40 repeat protein [G 99.6 2.1E-14 4.6E-19 147.0 17.8 264 404-675 138-436 (559)
217 KOG1523 Actin-related protein 99.6 7.4E-14 1.6E-18 135.8 20.5 235 407-653 9-269 (361)
218 PF04762 IKI3: IKI3 family; I 99.6 2.1E-09 4.5E-14 129.8 63.3 535 407-1051 74-688 (928)
219 KOG2139 WD40 repeat protein [G 99.6 7.6E-13 1.7E-17 130.7 26.3 284 346-661 98-430 (445)
220 KOG2041 WD40 repeat protein [G 99.6 2.8E-12 6E-17 137.2 32.3 565 346-1046 14-618 (1189)
221 KOG2139 WD40 repeat protein [G 99.6 4.4E-13 9.5E-18 132.4 24.1 260 772-1047 140-431 (445)
222 KOG2111 Uncharacterized conser 99.6 8.6E-13 1.9E-17 128.5 24.4 237 411-664 8-258 (346)
223 KOG2394 WD40 protein DMR-N9 [G 99.6 1.2E-13 2.6E-18 143.2 18.6 117 840-957 290-455 (636)
224 KOG1832 HIV-1 Vpr-binding prot 99.6 1.2E-14 2.6E-19 158.5 11.2 300 169-606 1013-1319(1516)
225 PRK03629 tolB translocation pr 99.6 2.1E-12 4.5E-17 145.3 29.4 222 405-642 195-427 (429)
226 KOG1272 WD40-repeat-containing 99.5 2.3E-14 5E-19 145.8 11.2 273 348-659 131-406 (545)
227 KOG1310 WD40 repeat protein [G 99.5 6.4E-14 1.4E-18 145.2 14.2 238 345-626 49-311 (758)
228 KOG0974 WD-repeat protein WDR6 99.5 5.8E-11 1.3E-15 134.1 38.0 277 347-664 8-290 (967)
229 PRK03629 tolB translocation pr 99.5 1.4E-12 3.1E-17 146.7 25.5 237 328-598 180-427 (429)
230 KOG2394 WD40 protein DMR-N9 [G 99.5 9.5E-13 2.1E-17 136.7 21.3 253 347-641 124-383 (636)
231 KOG3881 Uncharacterized conser 99.5 1.9E-12 4E-17 129.7 21.6 272 346-642 55-341 (412)
232 PRK05137 tolB translocation pr 99.5 6E-12 1.3E-16 142.8 29.1 222 404-642 197-432 (435)
233 PRK02889 tolB translocation pr 99.5 1.5E-12 3.3E-17 146.7 23.9 240 326-599 175-425 (427)
234 PRK04922 tolB translocation pr 99.5 2.1E-12 4.5E-17 146.3 24.1 237 328-598 185-432 (433)
235 KOG2041 WD40 repeat protein [G 99.5 9.4E-11 2E-15 125.7 34.5 521 339-1002 63-618 (1189)
236 PRK04922 tolB translocation pr 99.5 2.9E-12 6.2E-17 145.2 24.9 223 404-642 199-432 (433)
237 COG5354 Uncharacterized protei 99.5 4.3E-11 9.4E-16 124.1 30.5 358 525-1039 16-421 (561)
238 KOG0974 WD-repeat protein WDR6 99.5 3.3E-10 7.2E-15 128.1 40.0 194 348-576 89-289 (967)
239 PRK02889 tolB translocation pr 99.5 4.9E-12 1.1E-16 142.6 25.9 223 405-643 192-425 (427)
240 KOG2315 Predicted translation 99.5 1.4E-11 3E-16 129.5 26.9 309 317-664 39-392 (566)
241 KOG2111 Uncharacterized conser 99.5 4.2E-11 9.2E-16 116.9 28.0 240 543-914 7-258 (346)
242 KOG1272 WD40-repeat-containing 99.5 1.1E-13 2.4E-18 140.9 10.1 231 409-660 130-360 (545)
243 PRK05137 tolB translocation pr 99.5 9.9E-12 2.1E-16 141.0 25.9 239 326-598 181-432 (435)
244 PF10282 Lactonase: Lactonase, 99.5 3.8E-10 8.2E-15 123.5 37.0 213 841-1054 87-331 (345)
245 KOG2315 Predicted translation 99.5 4.6E-11 1E-15 125.7 27.8 336 541-957 34-393 (566)
246 KOG1409 Uncharacterized conser 99.4 9.5E-12 2.1E-16 122.4 19.8 344 578-1048 15-395 (404)
247 COG2706 3-carboxymuconate cycl 99.4 2.1E-10 4.6E-15 115.1 29.6 281 744-1053 15-329 (346)
248 PF08662 eIF2A: Eukaryotic tra 99.4 1.2E-11 2.7E-16 121.5 20.4 154 843-1010 8-186 (194)
249 KOG2321 WD40 repeat protein [G 99.4 9.6E-12 2.1E-16 130.3 20.5 275 727-1049 54-345 (703)
250 COG4946 Uncharacterized protei 99.4 1.2E-09 2.6E-14 112.1 34.2 171 851-1036 331-507 (668)
251 COG5354 Uncharacterized protei 99.4 1.4E-10 2.9E-15 120.5 27.3 316 312-664 32-397 (561)
252 KOG3881 Uncharacterized conser 99.4 4.3E-11 9.3E-16 120.1 22.6 245 407-664 54-322 (412)
253 KOG1354 Serine/threonine prote 99.4 1.2E-10 2.6E-15 114.6 24.7 193 453-664 25-246 (433)
254 PRK01029 tolB translocation pr 99.4 6.5E-11 1.4E-15 132.5 26.5 246 327-600 165-426 (428)
255 KOG2314 Translation initiation 99.4 1.3E-10 2.9E-15 121.4 24.9 320 313-664 211-575 (698)
256 COG2706 3-carboxymuconate cycl 99.4 2.5E-09 5.4E-14 107.5 32.7 300 520-933 15-345 (346)
257 KOG1354 Serine/threonine prote 99.4 5.9E-11 1.3E-15 116.7 20.6 263 346-621 25-362 (433)
258 PF08662 eIF2A: Eukaryotic tra 99.4 6.5E-11 1.4E-15 116.4 20.6 163 412-583 9-186 (194)
259 KOG2314 Translation initiation 99.4 5.2E-10 1.1E-14 117.1 27.0 228 410-652 212-465 (698)
260 TIGR02658 TTQ_MADH_Hv methylam 99.3 1.4E-08 2.9E-13 107.4 37.9 212 844-1064 108-347 (352)
261 PRK00178 tolB translocation pr 99.3 1.8E-10 3.8E-15 131.3 26.0 237 329-598 181-427 (430)
262 PF04762 IKI3: IKI3 family; I 99.3 1.1E-07 2.4E-12 115.1 50.7 247 409-664 22-335 (928)
263 PRK04792 tolB translocation pr 99.3 1.2E-10 2.5E-15 131.7 23.2 237 329-598 200-446 (448)
264 PRK01029 tolB translocation pr 99.3 7.9E-10 1.7E-14 123.8 28.9 227 405-644 181-426 (428)
265 PF10282 Lactonase: Lactonase, 99.3 9.4E-09 2E-13 112.5 36.1 247 408-662 36-322 (345)
266 PRK04792 tolB translocation pr 99.3 5.9E-10 1.3E-14 126.0 27.4 223 404-642 213-446 (448)
267 PRK00178 tolB translocation pr 99.3 8.9E-10 1.9E-14 125.6 28.8 223 404-642 194-427 (430)
268 TIGR02800 propeller_TolB tol-p 99.3 4.1E-10 9E-15 128.4 24.4 225 327-584 170-405 (417)
269 TIGR02800 propeller_TolB tol-p 99.3 1.1E-09 2.3E-14 125.0 27.3 210 404-627 185-405 (417)
270 KOG4547 WD40 repeat-containing 99.2 1.5E-09 3.3E-14 115.6 23.8 194 417-619 2-221 (541)
271 KOG0280 Uncharacterized conser 99.2 1.1E-09 2.4E-14 105.8 20.0 252 346-620 69-335 (339)
272 TIGR02658 TTQ_MADH_Hv methylam 99.2 1.8E-08 3.9E-13 106.5 30.6 276 328-628 28-340 (352)
273 TIGR03300 assembly_YfgL outer 99.2 4.9E-08 1.1E-12 109.3 33.1 145 469-626 67-216 (377)
274 KOG2659 LisH motif-containing 99.2 2.8E-10 6.1E-15 108.1 12.3 170 3-182 24-204 (228)
275 KOG0309 Conserved WD40 repeat- 99.1 3.1E-10 6.7E-15 122.5 12.9 284 312-619 24-340 (1081)
276 KOG4547 WD40 repeat-containing 99.1 2.1E-09 4.6E-14 114.5 19.1 199 782-1002 3-219 (541)
277 KOG0280 Uncharacterized conser 99.1 1.3E-08 2.7E-13 98.7 21.9 272 368-664 45-335 (339)
278 KOG1409 Uncharacterized conser 99.1 2.1E-09 4.6E-14 106.2 16.9 202 448-664 19-229 (404)
279 PLN02919 haloacid dehalogenase 99.1 6E-08 1.3E-12 119.9 32.1 260 776-1051 571-892 (1057)
280 TIGR03300 assembly_YfgL outer 99.1 2.1E-07 4.6E-12 104.2 32.9 306 512-1000 66-376 (377)
281 PLN02919 haloacid dehalogenase 99.1 2.9E-07 6.4E-12 113.9 35.6 74 884-958 806-892 (1057)
282 PRK04043 tolB translocation pr 99.0 6E-08 1.3E-12 107.8 25.7 217 326-576 168-401 (419)
283 KOG4190 Uncharacterized conser 99.0 3.2E-09 7E-14 110.7 14.1 244 404-661 731-987 (1034)
284 PF15492 Nbas_N: Neuroblastoma 99.0 1.3E-07 2.9E-12 92.4 22.9 209 846-1058 3-270 (282)
285 PRK04043 tolB translocation pr 98.9 2.9E-07 6.2E-12 102.5 26.6 191 842-1050 189-403 (419)
286 KOG1064 RAVE (regulator of V-A 98.9 5E-09 1.1E-13 124.3 12.5 200 405-628 2205-2408(2439)
287 KOG1064 RAVE (regulator of V-A 98.9 5.9E-09 1.3E-13 123.7 12.2 226 420-672 2180-2407(2439)
288 KOG0309 Conserved WD40 repeat- 98.9 3.3E-08 7.1E-13 107.2 16.0 293 341-664 19-341 (1081)
289 KOG3914 WD repeat protein WDR4 98.9 1.5E-08 3.1E-13 103.1 11.9 167 841-1060 63-236 (390)
290 KOG4532 WD40-like repeat conta 98.9 2.7E-07 5.9E-12 88.3 19.4 148 411-560 161-321 (344)
291 KOG1832 HIV-1 Vpr-binding prot 98.9 1.8E-09 3.8E-14 119.0 5.3 216 404-649 1097-1318(1516)
292 KOG4190 Uncharacterized conser 98.8 1.1E-08 2.3E-13 106.9 8.3 213 833-1058 731-959 (1034)
293 PRK11138 outer membrane biogen 98.8 3.6E-06 7.8E-11 94.5 29.0 145 512-665 70-226 (394)
294 PF07433 DUF1513: Protein of u 98.8 2.9E-06 6.3E-11 86.3 24.1 209 843-1057 7-257 (305)
295 KOG3914 WD repeat protein WDR4 98.8 8.7E-08 1.9E-12 97.6 12.8 164 348-537 64-231 (390)
296 KOG3617 WD40 and TPR repeat-co 98.7 3.7E-06 8.1E-11 93.1 25.2 112 348-486 17-132 (1416)
297 PF15492 Nbas_N: Neuroblastoma 98.7 1.4E-05 3.1E-10 78.6 26.2 247 351-628 2-269 (282)
298 KOG4532 WD40-like repeat conta 98.7 2.8E-06 6.1E-11 81.6 20.5 231 420-662 84-331 (344)
299 PRK11138 outer membrane biogen 98.7 8.3E-06 1.8E-10 91.6 28.5 187 469-664 71-276 (394)
300 COG5170 CDC55 Serine/threonine 98.7 3E-07 6.6E-12 89.7 14.0 248 407-662 25-367 (460)
301 KOG3617 WD40 and TPR repeat-co 98.7 4.3E-06 9.4E-11 92.6 24.3 514 412-1053 19-591 (1416)
302 KOG0882 Cyclophilin-related pe 98.7 1.2E-06 2.7E-11 90.1 18.9 213 451-672 7-240 (558)
303 COG5170 CDC55 Serine/threonine 98.7 5.9E-07 1.3E-11 87.7 15.3 256 346-616 26-365 (460)
304 KOG1897 Damage-specific DNA bi 98.7 0.0022 4.8E-08 73.8 49.8 594 345-1002 305-941 (1096)
305 KOG4714 Nucleoporin [Nuclear s 98.7 5.2E-07 1.1E-11 86.1 13.8 209 349-576 39-255 (319)
306 KOG4649 PQQ (pyrrolo-quinoline 98.6 3.5E-05 7.6E-10 74.0 25.7 144 353-524 17-160 (354)
307 PF08450 SGL: SMP-30/Gluconola 98.6 3.6E-05 7.9E-10 80.2 29.2 219 413-651 4-244 (246)
308 KOG1645 RING-finger-containing 98.6 6.7E-06 1.5E-10 83.8 22.2 249 403-662 188-461 (463)
309 KOG4714 Nucleoporin [Nuclear s 98.6 2E-06 4.4E-11 82.2 17.1 95 861-955 159-255 (319)
310 PF07433 DUF1513: Protein of u 98.6 5.9E-05 1.3E-09 77.0 27.8 232 411-657 7-280 (305)
311 PF08450 SGL: SMP-30/Gluconola 98.6 8.7E-05 1.9E-09 77.4 30.2 219 351-606 4-243 (246)
312 KOG2695 WD40 repeat protein [G 98.6 2.8E-07 6.1E-12 91.5 10.4 164 353-540 218-387 (425)
313 KOG4649 PQQ (pyrrolo-quinoline 98.6 0.00027 5.9E-09 68.1 29.1 140 512-660 24-163 (354)
314 PRK02888 nitrous-oxide reducta 98.6 1.4E-05 3E-10 89.2 23.7 157 848-1011 284-482 (635)
315 KOG0882 Cyclophilin-related pe 98.6 1.6E-06 3.5E-11 89.3 15.1 258 342-626 5-313 (558)
316 PF13360 PQQ_2: PQQ-like domai 98.5 2.3E-05 4.9E-10 81.6 24.5 219 429-665 2-233 (238)
317 PF00400 WD40: WD domain, G-be 98.5 3.3E-07 7.1E-12 63.4 6.5 39 914-952 1-39 (39)
318 PRK02888 nitrous-oxide reducta 98.5 1.9E-05 4.1E-10 88.1 22.8 102 840-943 320-450 (635)
319 PF13360 PQQ_2: PQQ-like domai 98.5 3.4E-05 7.5E-10 80.2 23.9 222 368-625 2-237 (238)
320 PF06433 Me-amine-dh_H: Methyl 98.5 2.4E-05 5.3E-10 80.6 21.5 285 567-922 17-330 (342)
321 KOG1275 PAB-dependent poly(A) 98.5 3E-06 6.4E-11 95.1 15.2 180 851-1045 146-340 (1118)
322 PF06433 Me-amine-dh_H: Methyl 98.4 0.00045 9.7E-09 71.5 29.6 212 845-1064 99-337 (342)
323 PF00930 DPPIV_N: Dipeptidyl p 98.4 6.4E-05 1.4E-09 82.7 25.2 267 355-651 1-346 (353)
324 KOG3621 WD40 repeat-containing 98.4 6.4E-05 1.4E-09 82.8 23.5 290 345-671 32-362 (726)
325 KOG1920 IkappaB kinase complex 98.4 9.1E-05 2E-09 86.6 25.5 279 346-661 68-364 (1265)
326 KOG1920 IkappaB kinase complex 98.4 2E-05 4.2E-10 92.0 19.3 236 771-1051 67-326 (1265)
327 KOG0396 Uncharacterized conser 98.3 4.5E-06 9.7E-11 84.4 11.4 172 6-189 116-298 (389)
328 PF00400 WD40: WD domain, G-be 98.3 2.3E-06 5E-11 59.1 6.8 39 871-910 1-39 (39)
329 PF14583 Pectate_lyase22: Olig 98.3 0.0014 3E-08 69.4 30.1 280 352-661 41-380 (386)
330 PF10607 CLTH: CTLH/CRA C-term 98.3 2.7E-06 5.8E-11 79.9 9.2 134 38-182 5-141 (145)
331 KOG2114 Vacuolar assembly/sort 98.3 3.9E-05 8.5E-10 86.2 18.9 203 846-1056 29-252 (933)
332 KOG2695 WD40 repeat protein [G 98.3 1.6E-06 3.6E-11 86.2 7.0 139 339-495 245-386 (425)
333 KOG1645 RING-finger-containing 98.3 5.4E-05 1.2E-09 77.5 17.6 244 345-618 192-461 (463)
334 KOG1897 Damage-specific DNA bi 98.3 0.02 4.4E-07 66.4 52.6 578 348-1068 259-919 (1096)
335 PF00930 DPPIV_N: Dipeptidyl p 98.3 0.0011 2.3E-08 73.1 29.8 143 840-992 183-345 (353)
336 KOG2066 Vacuolar assembly/sort 98.3 9E-06 1.9E-10 90.5 12.8 162 882-1067 40-207 (846)
337 KOG3621 WD40 repeat-containing 98.2 0.00028 6.1E-09 78.0 22.8 164 773-961 77-252 (726)
338 KOG1275 PAB-dependent poly(A) 98.2 3.2E-05 6.9E-10 87.2 15.6 183 419-617 146-341 (1118)
339 cd00216 PQQ_DH Dehydrogenases 98.2 0.0021 4.5E-08 74.1 31.1 193 469-664 63-321 (488)
340 KOG2114 Vacuolar assembly/sort 98.2 0.00024 5.3E-09 80.1 22.1 200 415-627 30-252 (933)
341 PF11768 DUF3312: Protein of u 98.1 0.00017 3.7E-09 78.6 18.8 139 326-487 185-331 (545)
342 KOG2066 Vacuolar assembly/sort 98.1 0.00014 3E-09 81.4 17.6 185 840-1047 39-233 (846)
343 cd00216 PQQ_DH Dehydrogenases 98.1 0.006 1.3E-07 70.3 32.1 110 512-628 62-193 (488)
344 PF04053 Coatomer_WDAD: Coatom 98.0 0.00056 1.2E-08 76.0 20.9 176 840-1043 32-219 (443)
345 PF11768 DUF3312: Protein of u 98.0 0.00032 7E-09 76.5 18.3 115 840-957 205-332 (545)
346 COG0823 TolB Periplasmic compo 98.0 0.0011 2.4E-08 73.5 23.0 196 449-653 188-390 (425)
347 PF08513 LisH: LisH; InterPro 98.0 9.3E-06 2E-10 49.4 3.8 27 6-32 1-27 (27)
348 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.0 0.018 3.9E-07 66.6 33.0 110 512-627 70-198 (527)
349 smart00668 CTLH C-terminal to 97.9 8.9E-06 1.9E-10 62.1 3.9 53 37-90 4-56 (58)
350 COG0823 TolB Periplasmic compo 97.9 0.00072 1.6E-08 74.9 19.4 203 330-561 176-389 (425)
351 PF08596 Lgl_C: Lethal giant l 97.9 0.0071 1.5E-07 66.4 26.9 242 410-661 3-334 (395)
352 smart00667 LisH Lissencephaly 97.9 1.9E-05 4E-10 52.5 4.2 32 4-35 2-33 (34)
353 PF08596 Lgl_C: Lethal giant l 97.9 0.0053 1.2E-07 67.4 25.4 253 348-607 3-325 (395)
354 PF04053 Coatomer_WDAD: Coatom 97.9 0.0034 7.4E-08 69.8 23.8 222 406-664 30-264 (443)
355 PF06977 SdiA-regulated: SdiA- 97.9 0.0056 1.2E-07 62.1 23.2 202 840-1044 21-247 (248)
356 PF14583 Pectate_lyase22: Olig 97.9 0.007 1.5E-07 64.2 24.4 228 413-653 40-303 (386)
357 PF06977 SdiA-regulated: SdiA- 97.8 0.012 2.7E-07 59.6 25.3 191 346-559 21-239 (248)
358 COG3391 Uncharacterized conser 97.8 0.011 2.3E-07 65.7 26.8 207 843-1058 76-294 (381)
359 PF02897 Peptidase_S9_N: Proly 97.8 0.019 4.2E-07 65.2 29.8 250 348-623 125-409 (414)
360 KOG1008 Uncharacterized conser 97.7 1.5E-05 3.3E-10 86.2 2.6 203 347-575 57-275 (783)
361 PF04841 Vps16_N: Vps16, N-ter 97.7 0.01 2.2E-07 66.3 24.8 208 846-1067 34-266 (410)
362 PF00780 CNH: CNH domain; Int 97.7 0.016 3.6E-07 61.5 25.5 207 840-1059 35-267 (275)
363 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.6 0.11 2.5E-06 60.0 32.4 97 566-665 78-192 (527)
364 PRK13616 lipoprotein LpqB; Pro 97.6 0.0031 6.7E-08 73.1 19.5 188 841-1042 350-563 (591)
365 KOG1008 Uncharacterized conser 97.5 8.6E-05 1.9E-09 80.6 4.3 159 498-661 57-224 (783)
366 COG3490 Uncharacterized protei 97.5 0.0065 1.4E-07 59.9 16.6 205 845-1054 72-317 (366)
367 PF02897 Peptidase_S9_N: Proly 97.4 0.12 2.7E-06 58.7 29.5 244 410-664 125-406 (414)
368 PF04841 Vps16_N: Vps16, N-ter 97.4 0.037 8E-07 61.9 24.2 139 889-1057 186-324 (410)
369 PF14870 PSII_BNR: Photosynthe 97.4 0.074 1.6E-06 55.7 24.3 191 844-1044 107-301 (302)
370 PRK13616 lipoprotein LpqB; Pro 97.4 0.0083 1.8E-07 69.7 19.0 160 882-1046 350-524 (591)
371 COG3391 Uncharacterized conser 97.4 0.2 4.4E-06 55.7 29.0 241 410-664 32-285 (381)
372 PF00780 CNH: CNH domain; Int 97.4 0.12 2.6E-06 54.9 26.4 229 357-629 6-266 (275)
373 COG3490 Uncharacterized protei 97.3 0.061 1.3E-06 53.4 21.0 269 338-660 59-346 (366)
374 PF10647 Gmad1: Lipoprotein Lp 97.3 0.081 1.8E-06 54.8 23.0 207 841-1055 24-243 (253)
375 PF05694 SBP56: 56kDa selenium 97.2 0.081 1.8E-06 56.8 21.3 191 845-1036 134-392 (461)
376 KOG2817 Predicted E3 ubiquitin 97.1 0.0031 6.7E-08 65.5 10.6 110 5-115 116-237 (394)
377 COG3386 Gluconolactonase [Carb 97.1 0.27 5.8E-06 52.1 25.1 221 415-652 31-275 (307)
378 PF03178 CPSF_A: CPSF A subuni 97.1 0.04 8.7E-07 60.0 19.7 173 861-1047 2-202 (321)
379 PF08553 VID27: VID27 cytoplas 97.1 0.034 7.3E-07 65.5 19.4 147 893-1046 492-646 (794)
380 smart00320 WD40 WD40 repeats. 97.1 0.0016 3.5E-08 44.2 5.6 39 914-952 2-40 (40)
381 COG3386 Gluconolactonase [Carb 97.1 0.19 4.1E-06 53.2 23.2 223 352-607 30-274 (307)
382 PF03178 CPSF_A: CPSF A subuni 97.0 0.078 1.7E-06 57.7 21.3 142 420-575 42-202 (321)
383 PF14655 RAB3GAP2_N: Rab3 GTPa 97.0 0.76 1.7E-05 50.5 27.9 84 542-629 308-409 (415)
384 KOG4640 Anaphase-promoting com 97.0 0.0032 6.9E-08 69.1 9.7 93 840-934 20-115 (665)
385 TIGR03074 PQQ_membr_DH membran 96.9 1.5 3.3E-05 52.8 38.8 197 469-665 196-480 (764)
386 KOG4640 Anaphase-promoting com 96.9 0.004 8.8E-08 68.3 9.8 94 882-984 21-115 (665)
387 PF14655 RAB3GAP2_N: Rab3 GTPa 96.9 0.18 3.8E-06 55.4 21.6 82 840-921 307-407 (415)
388 PRK10115 protease 2; Provision 96.9 1.6 3.6E-05 52.5 32.0 243 410-664 128-396 (686)
389 PF10647 Gmad1: Lipoprotein Lp 96.8 0.067 1.5E-06 55.4 17.6 149 883-1040 25-188 (253)
390 KOG2395 Protein involved in va 96.8 0.027 5.9E-07 60.7 14.3 157 895-1058 347-513 (644)
391 PF14783 BBS2_Mid: Ciliary BBS 96.7 0.18 3.8E-06 43.2 15.6 99 843-949 2-109 (111)
392 smart00320 WD40 WD40 repeats. 96.7 0.0056 1.2E-07 41.4 5.8 39 871-910 2-40 (40)
393 PF05694 SBP56: 56kDa selenium 96.6 0.22 4.8E-06 53.6 19.4 149 511-659 87-274 (461)
394 PRK10115 protease 2; Provision 96.5 3 6.4E-05 50.4 32.2 243 348-621 128-397 (686)
395 PF08553 VID27: VID27 cytoplas 96.5 0.06 1.3E-06 63.5 15.7 142 469-617 496-646 (794)
396 PF14727 PHTB1_N: PTHB1 N-term 96.4 2.1 4.6E-05 47.3 32.4 281 356-664 34-362 (418)
397 PF14783 BBS2_Mid: Ciliary BBS 96.3 0.1 2.2E-06 44.6 12.0 102 349-480 2-109 (111)
398 KOG4441 Proteins containing BT 96.3 0.37 8E-06 56.3 21.0 232 419-664 284-548 (571)
399 PF15390 DUF4613: Domain of un 96.3 0.12 2.6E-06 57.0 15.4 168 882-1067 20-202 (671)
400 PRK13684 Ycf48-like protein; P 96.3 2.3 4.9E-05 46.3 30.7 158 881-1046 172-330 (334)
401 KOG2079 Vacuolar assembly/sort 96.2 0.052 1.1E-06 63.7 12.8 105 419-529 98-203 (1206)
402 KOG2444 WD40 repeat protein [G 96.2 0.015 3.2E-07 56.0 6.9 105 852-956 70-179 (238)
403 PF05096 Glu_cyclase_2: Glutam 96.1 1.8 3.9E-05 44.0 23.5 188 840-1036 44-249 (264)
404 PHA02713 hypothetical protein; 96.1 0.29 6.4E-06 57.3 19.1 189 850-1052 302-538 (557)
405 PF12894 Apc4_WD40: Anaphase-p 96.1 0.016 3.5E-07 41.0 5.1 33 346-380 11-43 (47)
406 cd08044 TAF5_NTD2 TAF5_NTD2 is 96.0 0.018 3.9E-07 52.5 6.8 82 67-149 25-113 (133)
407 COG3204 Uncharacterized protei 96.0 1.1 2.3E-05 45.5 19.2 202 771-999 84-308 (316)
408 COG3204 Uncharacterized protei 96.0 2 4.3E-05 43.7 21.0 169 405-583 82-270 (316)
409 KOG2395 Protein involved in va 96.0 0.15 3.3E-06 55.2 14.0 141 467-616 346-498 (644)
410 PF07995 GSDH: Glucose / Sorbo 95.9 3.3 7.1E-05 45.0 27.9 68 590-657 254-330 (331)
411 PHA02713 hypothetical protein; 95.7 0.56 1.2E-05 55.0 19.2 190 464-664 303-535 (557)
412 PF12894 Apc4_WD40: Anaphase-p 95.7 0.041 8.8E-07 39.0 5.8 32 407-438 10-41 (47)
413 PF05096 Glu_cyclase_2: Glutam 95.6 3 6.4E-05 42.5 22.0 196 771-995 43-251 (264)
414 TIGR03074 PQQ_membr_DH membran 95.6 3.2 6.9E-05 50.1 24.8 204 420-627 194-486 (764)
415 KOG2079 Vacuolar assembly/sort 95.4 0.042 9.1E-07 64.5 8.0 101 851-954 98-203 (1206)
416 KOG4499 Ca2+-binding protein R 95.4 2 4.3E-05 41.9 17.5 138 453-599 108-264 (310)
417 TIGR03118 PEPCTERM_chp_1 conse 95.3 4.1 8.8E-05 41.9 23.7 213 842-1062 24-294 (336)
418 PF04494 TFIID_90kDa: WD40 ass 95.2 0.022 4.7E-07 52.6 4.2 67 67-134 36-102 (142)
419 PLN00033 photosystem II stabil 95.2 6.4 0.00014 43.6 26.8 153 884-1044 241-396 (398)
420 PHA03098 kelch-like protein; P 95.2 1 2.3E-05 53.1 19.2 189 849-1052 292-516 (534)
421 KOG4499 Ca2+-binding protein R 95.2 1.3 2.9E-05 43.0 15.6 141 882-1027 109-263 (310)
422 PHA02790 Kelch-like protein; P 94.9 1.8 3.8E-05 50.0 19.4 186 850-1051 270-474 (480)
423 KOG4441 Proteins containing BT 94.8 1.7 3.6E-05 51.0 19.0 194 844-1053 326-552 (571)
424 PF12234 Rav1p_C: RAVE protein 94.8 0.94 2E-05 52.3 16.3 113 455-575 31-156 (631)
425 PF12234 Rav1p_C: RAVE protein 94.8 0.83 1.8E-05 52.8 15.7 119 877-1002 25-155 (631)
426 TIGR02604 Piru_Ver_Nterm putat 94.7 1.3 2.9E-05 49.0 17.3 151 882-1038 14-204 (367)
427 KOG2280 Vacuolar assembly/sort 94.6 1.2 2.7E-05 50.8 16.0 194 862-1067 65-266 (829)
428 TIGR03118 PEPCTERM_chp_1 conse 94.3 7.2 0.00016 40.1 21.5 203 455-664 24-281 (336)
429 PF14870 PSII_BNR: Photosynthe 94.3 8.5 0.00019 40.6 31.4 152 840-1000 144-301 (302)
430 PLN00033 photosystem II stabil 94.2 3.7 8.1E-05 45.4 18.9 148 841-1000 239-396 (398)
431 PF13449 Phytase-like: Esteras 94.2 9.9 0.00021 41.2 22.3 161 840-1002 19-248 (326)
432 PHA03098 kelch-like protein; P 94.1 2.5 5.3E-05 49.9 18.9 151 511-664 343-513 (534)
433 PF07995 GSDH: Glucose / Sorbo 94.1 11 0.00023 41.1 25.4 67 840-907 252-330 (331)
434 PF14761 HPS3_N: Hermansky-Pud 94.0 3.1 6.8E-05 40.6 15.4 149 895-1047 29-214 (215)
435 PF15390 DUF4613: Domain of un 94.0 13 0.00029 41.9 28.6 114 542-661 57-185 (671)
436 KOG2444 WD40 repeat protein [G 94.0 0.2 4.3E-06 48.5 7.3 106 419-530 69-178 (238)
437 KOG2247 WD40 repeat-containing 93.7 0.0088 1.9E-07 63.7 -2.4 244 776-1055 38-288 (615)
438 COG3823 Glutamine cyclotransfe 93.0 3.6 7.9E-05 39.4 13.5 106 851-961 55-165 (262)
439 COG4257 Vgb Streptogramin lyas 93.0 11 0.00024 37.9 19.7 189 840-1050 61-265 (353)
440 PF08728 CRT10: CRT10; InterP 92.9 3.5 7.5E-05 48.3 16.4 174 852-1046 49-245 (717)
441 PF13449 Phytase-like: Esteras 92.9 4.9 0.00011 43.6 17.1 152 881-1034 19-231 (326)
442 KOG3630 Nuclear pore complex, 92.7 0.67 1.5E-05 55.3 10.4 146 840-991 100-260 (1405)
443 TIGR02604 Piru_Ver_Nterm putat 92.6 3.6 7.9E-05 45.6 16.0 139 841-992 14-201 (367)
444 KOG1916 Nuclear protein, conta 92.6 0.084 1.8E-06 60.7 3.0 176 861-1046 153-373 (1283)
445 KOG3630 Nuclear pore complex, 92.4 1.4 3E-05 52.9 12.3 145 455-605 102-260 (1405)
446 KOG2377 Uncharacterized conser 92.4 4.2 9.2E-05 43.7 14.6 157 884-1050 25-188 (657)
447 PF03022 MRJP: Major royal jel 92.0 17 0.00036 38.5 19.1 195 842-1037 2-255 (287)
448 PF10168 Nup88: Nuclear pore c 91.9 23 0.00049 42.7 22.0 75 840-914 84-181 (717)
449 PHA02790 Kelch-like protein; P 91.6 7.1 0.00015 45.1 17.3 184 419-619 271-471 (480)
450 KOG2280 Vacuolar assembly/sort 91.6 20 0.00044 41.6 19.7 219 348-599 45-270 (829)
451 PF10313 DUF2415: Uncharacteri 91.3 0.74 1.6E-05 31.6 5.2 32 882-913 1-34 (43)
452 TIGR03606 non_repeat_PQQ dehyd 91.3 24 0.00051 39.7 19.9 112 880-994 28-165 (454)
453 PF10214 Rrn6: RNA polymerase 91.1 45 0.00098 41.1 24.3 188 840-1063 79-294 (765)
454 PF10313 DUF2415: Uncharacteri 90.8 0.84 1.8E-05 31.3 5.1 31 409-439 1-34 (43)
455 PF11725 AvrE: Pathogenicity f 90.8 35 0.00075 43.9 22.1 149 345-530 361-517 (1774)
456 PF08728 CRT10: CRT10; InterP 90.7 16 0.00034 43.2 18.4 116 410-528 102-245 (717)
457 PF14727 PHTB1_N: PTHB1 N-term 90.7 32 0.00069 38.3 30.7 143 511-661 37-203 (418)
458 smart00036 CNH Domain found in 90.6 27 0.00059 37.3 22.8 208 840-1057 42-280 (302)
459 COG4257 Vgb Streptogramin lyas 90.6 21 0.00046 36.1 20.5 230 410-663 63-306 (353)
460 PF10168 Nup88: Nuclear pore c 90.5 5.7 0.00012 47.6 15.2 71 883-955 86-180 (717)
461 KOG2377 Uncharacterized conser 90.3 2.8 6E-05 45.0 10.9 123 345-487 65-187 (657)
462 PRK13613 lipoprotein LpqB; Pro 90.3 33 0.00072 40.4 20.9 193 842-1041 364-576 (599)
463 COG1520 FOG: WD40-like repeat 90.1 32 0.00069 38.2 20.3 109 848-959 65-176 (370)
464 COG3292 Predicted periplasmic 89.9 30 0.00065 38.9 18.5 278 342-658 160-443 (671)
465 KOG1900 Nuclear pore complex, 89.7 1.9 4.2E-05 52.8 10.4 154 901-1055 96-281 (1311)
466 COG3823 Glutamine cyclotransfe 89.7 20 0.00044 34.6 15.4 101 552-660 55-156 (262)
467 COG5167 VID27 Protein involved 89.6 7.2 0.00016 42.7 13.4 154 893-1057 478-644 (776)
468 KOG1900 Nuclear pore complex, 89.6 4.6 0.0001 49.7 13.3 156 348-531 80-274 (1311)
469 PF07569 Hira: TUP1-like enhan 89.5 1.6 3.5E-05 43.8 8.4 78 932-1009 18-101 (219)
470 PRK13615 lipoprotein LpqB; Pro 89.3 26 0.00057 40.6 18.7 151 885-1047 337-502 (557)
471 PF07676 PD40: WD40-like Beta 89.2 1.4 3E-05 29.8 5.5 30 345-374 7-38 (39)
472 KOG1916 Nuclear protein, conta 89.2 0.4 8.7E-06 55.5 4.2 130 345-497 131-282 (1283)
473 PF02333 Phytase: Phytase; In 89.1 38 0.00082 37.0 23.1 200 850-1057 66-301 (381)
474 COG5167 VID27 Protein involved 89.0 12 0.00027 41.0 14.6 146 464-618 477-632 (776)
475 PF14761 HPS3_N: Hermansky-Pud 88.8 19 0.00041 35.4 14.5 156 842-1002 19-213 (215)
476 PF14781 BBS2_N: Ciliary BBSom 88.6 14 0.0003 33.1 12.3 112 884-1007 1-129 (136)
477 PRK13684 Ycf48-like protein; P 88.4 42 0.00091 36.5 32.5 152 497-660 172-329 (334)
478 PF12657 TFIIIC_delta: Transcr 88.2 2.8 6E-05 40.5 8.9 31 409-439 86-122 (173)
479 KOG1983 Tomosyn and related SN 87.8 12 0.00026 46.9 15.9 69 976-1051 200-268 (993)
480 COG4590 ABC-type uncharacteriz 87.7 1.1 2.4E-05 47.7 6.0 168 874-1050 213-389 (733)
481 COG4590 ABC-type uncharacteriz 87.6 2.2 4.7E-05 45.6 8.0 153 840-1002 220-385 (733)
482 COG5290 IkappaB kinase complex 87.1 26 0.00057 40.8 16.3 58 840-897 295-352 (1243)
483 TIGR03606 non_repeat_PQQ dehyd 86.5 19 0.00041 40.5 15.0 113 923-1038 28-166 (454)
484 PRK14131 N-acetylneuraminic ac 86.5 59 0.0013 36.2 23.4 54 849-903 82-149 (376)
485 PRK13614 lipoprotein LpqB; Pro 86.2 47 0.001 38.7 18.5 159 883-1049 344-520 (573)
486 COG1520 FOG: WD40-like repeat 86.2 60 0.0013 36.0 23.0 198 422-629 70-279 (370)
487 KOG2247 WD40 repeat-containing 86.1 0.2 4.3E-06 53.9 -0.4 140 319-483 41-186 (615)
488 PF08801 Nucleoporin_N: Nup133 85.4 17 0.00037 41.2 14.8 31 1018-1048 190-220 (422)
489 KOG1898 Splicing factor 3b, su 85.4 1E+02 0.0022 37.8 37.6 104 846-954 939-1048(1205)
490 TIGR02276 beta_rpt_yvtn 40-res 84.4 5 0.00011 27.5 6.3 39 850-889 1-41 (42)
491 PRK13613 lipoprotein LpqB; Pro 84.3 30 0.00065 40.7 16.0 153 883-1046 364-536 (599)
492 PRK14131 N-acetylneuraminic ac 83.9 77 0.0017 35.3 20.2 68 419-489 38-118 (376)
493 PF07569 Hira: TUP1-like enhan 83.6 7 0.00015 39.3 9.3 72 354-439 18-96 (219)
494 COG3292 Predicted periplasmic 83.3 88 0.0019 35.5 22.7 105 408-523 164-269 (671)
495 TIGR03548 mutarot_permut cycli 83.2 74 0.0016 34.5 22.2 108 469-579 75-198 (323)
496 PLN02193 nitrile-specifier pro 82.7 99 0.0021 35.6 19.7 155 893-1052 228-415 (470)
497 PF07250 Glyoxal_oxid_N: Glyox 82.6 52 0.0011 33.5 14.9 138 524-664 49-199 (243)
498 KOG1898 Splicing factor 3b, su 82.4 1.3E+02 0.0029 36.9 33.4 173 862-1047 854-1048(1205)
499 KOG4460 Nuclear pore complex, 81.1 50 0.0011 36.7 14.6 72 883-955 105-199 (741)
500 COG5276 Uncharacterized conser 81.1 71 0.0015 32.9 29.0 186 319-535 55-247 (370)
No 1
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8.4e-69 Score=526.65 Aligned_cols=490 Identities=21% Similarity=0.311 Sum_probs=407.1
Q ss_pred hHHHHHHHHHHhhhccHHHHHHHHHHHcCCCcc---HHHHHHHhhcccHHHHHHHhcCcCcccccchhhHHHHHHHHHHH
Q 001477 5 SRELVFLILQFLDEEKFKETVHKLEQESGFFFN---MKHFEDQVQAGEWDEVERYLCGFTKVEDNRYSMKIFFEIRKQKY 81 (1071)
Q Consensus 5 ~~e~~rli~q~L~~~g~~~s~~~L~~Esg~~~~---~~~l~~~i~~g~w~~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~ 81 (1071)
+-|++||+.|+|..+||.+|+.+||.|||+.+. .+.|.++++.|+|+.++..+..+ ..+++...+++.|++++|+|
T Consensus 17 k~efi~il~q~l~slgy~~S~~~lE~es~ll~~tat~klf~q~vlqg~w~q~v~~~~~i-~~~de~~~~ea~fLv~kQ~f 95 (519)
T KOG0293|consen 17 KGEFIRILWQILYSLGYDHSSPLLEWESGLLIPTATTKLFDQQVLQGQWDQQVMSLVRI-SFEDERNRKEAMFLVNKQIF 95 (519)
T ss_pred cchhhHhHHHHHHhcCccccchhhHHhhCcccccchHHHHHHHHHcccHHHHHHHHhhc-cCcchhhhHHHHHHHHHHHH
Confidence 458999999999999999999999999999886 89999999999999999988877 34555667789999999999
Q ss_pred HHHhcccCHHHHHHHHHhhcccccccCHHHHHHHHHhhcccCc-cchhhhccCCCchhHHHHHHHHHHhhcccCcccccc
Q 001477 82 LEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLTLDNF-RQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDK 160 (1071)
Q Consensus 82 lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~ll~~~~~-~~~~~~~~~~~~~~~R~~l~~~l~~~~~~~~~~~~~ 160 (1071)
||++..|...+|+.+||+.+.++ .+..+++++|+.-|..++- ..++... -......|..|+++|+++|||+++
T Consensus 96 LEf~k~~~is~al~~l~~~~~~l-r~~~kk~~el~~sll~sn~~~~ne~~~-~~~~~n~R~~ll~elskyi~p~il---- 169 (519)
T KOG0293|consen 96 LEFLKTGSISHALPVLRNPVLYL-RKNKKKFHELASSLLVSNDQFSNEENT-TAQLNNERDKLLDELSKYIPPNIL---- 169 (519)
T ss_pred HHHHhhccHhhhhHhhhcchhhh-hhhHHHHHHHHHHHhccccccccccch-hhhhchhHHHHHHHHHhhCCHhhc----
Confidence 99999999999999999999999 5689999999877665443 3333321 223567799999999999999998
Q ss_pred CCCCCCcchHHHHHHHHHHHHHHhhCCCCCCCCCccccccccccCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCC
Q 001477 161 LSFPSFKSSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFTDHSCNPTSNGARPPPPTNNPLVGPIPKAGQFPPIGAHGPF 240 (1071)
Q Consensus 161 ~~~~~~p~~rL~~ll~qa~~~q~~~~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~f 240 (1071)
+|++||++||+||++||++.|+|||+ .+..|||.||.|++ .++ |. .+.|++.+
T Consensus 170 -----lP~rRLehLl~qAv~~Q~d~cvyhns-ldsvsll~Dh~c~~------------~qi----p~-qt~qil~~---- 222 (519)
T KOG0293|consen 170 -----LPKRRLEHLLEQAVKYQRDSCVYHNS-LDSVSLLSDHFCGR------------LQI----PS-QTWQILQD---- 222 (519)
T ss_pred -----CChHHHHHHHHHHHHHHHhHhHHhcc-cchhhhhhhcccCc------------ccC----Cc-hhhhhHhh----
Confidence 99999999999999999999999995 55589999999999 233 21 11122222
Q ss_pred CCCCCCCcccccccccCCCCCCCCCCccCCCCCCCCCCcccccccCCCCCCCCCcccccCCChhhHHhhcccCCcceeec
Q 001477 241 QPVVSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKHPRTPTGMTGMDYQSADSDHLMKRIRTGQSDEVSF 320 (1071)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 320 (1071)
T Consensus 223 -------------------------------------------------------------------------------- 222 (519)
T KOG0293|consen 223 -------------------------------------------------------------------------------- 222 (519)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCccccCCccceeeEEeecCCCCeEEEEeecCCCeEEEEEcCCCeEEEEecCCCcccccccceeecccccccchh
Q 001477 321 AGVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQ 400 (1071)
Q Consensus 321 s~~~~~~~~~~~d~~~~~~~~~~~h~~~V~~~~fsp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~ 400 (1071)
|.++||.+.||++|+ +||+++.|.+..||++.....+ ++.
T Consensus 223 ------------------------htdEVWfl~FS~nGk-yLAsaSkD~Taiiw~v~~d~~~-----kl~---------- 262 (519)
T KOG0293|consen 223 ------------------------HTDEVWFLQFSHNGK-YLASASKDSTAIIWIVVYDVHF-----KLK---------- 262 (519)
T ss_pred ------------------------CCCcEEEEEEcCCCe-eEeeccCCceEEEEEEecCcce-----eee----------
Confidence 456899999999998 7999999999999998654321 111
Q ss_pred hhhcccCCCCeeEEEECCCCCEEEEEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEE
Q 001477 401 NALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIK 480 (1071)
Q Consensus 401 ~~~~~~h~~~v~~~~~spd~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~ 480 (1071)
..+.+|..+|..+.||||.++|++|+.|..+.+||+.+|....... .+|...+.+++|.|||. .+++|+.|+++.
T Consensus 263 -~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~--~~~~~S~~sc~W~pDg~--~~V~Gs~dr~i~ 337 (519)
T KOG0293|consen 263 -KTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYP--SGLGFSVSSCAWCPDGF--RFVTGSPDRTII 337 (519)
T ss_pred -eeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcc--cCcCCCcceeEEccCCc--eeEecCCCCcEE
Confidence 1267899999999999999999999999999999999998765322 24567899999999999 799999999999
Q ss_pred EEEccCCceeEEecCC-CCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCceeEEecCCCCcEEEEEEccCCCEEEEe
Q 001477 481 VWDVVAGRKQYTFEGH-EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSC 559 (1071)
Q Consensus 481 iwd~~~~~~~~~~~~h-~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 559 (1071)
.||+ +|+.+...++- ...|.+++.++++ .++++.+.|..|++++.++..... +.....+|++++.|.|++++++.
T Consensus 338 ~wdl-Dgn~~~~W~gvr~~~v~dlait~Dg--k~vl~v~~d~~i~l~~~e~~~dr~-lise~~~its~~iS~d~k~~Lvn 413 (519)
T KOG0293|consen 338 MWDL-DGNILGNWEGVRDPKVHDLAITYDG--KYVLLVTVDKKIRLYNREARVDRG-LISEEQPITSFSISKDGKLALVN 413 (519)
T ss_pred EecC-CcchhhcccccccceeEEEEEcCCC--cEEEEEecccceeeechhhhhhhc-cccccCceeEEEEcCCCcEEEEE
Confidence 9995 55656666653 3568999998754 899999999999999987655543 33356689999999999999987
Q ss_pred ccCCCCCCeEEEEeCCCCceeEEeecccccc-eeEEEEeC-CCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcce
Q 001477 560 GTSKEGESHLVEWNESEGAIKRTYSGFRKRS-LGVVQFDT-TRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPR 637 (1071)
Q Consensus 560 ~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~-v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 637 (1071)
-. +..+++||++..+.++.+.||..+. +-.-||.. +..++++||+|+.|+||+..+++++..+.+|.. .|++
T Consensus 414 L~----~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~--~vNc 487 (519)
T KOG0293|consen 414 LQ----DQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSK--TVNC 487 (519)
T ss_pred cc----cCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcc--eeeE
Confidence 65 6669999999999999999987642 33344544 458899999999999999999999999998765 7999
Q ss_pred EEEcC-CCCEEEEEeCCCcEEEEEcCC
Q 001477 638 LRFNK-EGSLLAVTTSDNGIKILANSD 663 (1071)
Q Consensus 638 ~~~s~-~~~~l~~~~~dg~v~iw~~~~ 663 (1071)
++|+| +..++|++++||+||||....
T Consensus 488 VswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 488 VSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred EecCCCCHHHhhccCCCCeEEEecCCc
Confidence 99999 667999999999999998754
No 2
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=4.4e-66 Score=491.01 Aligned_cols=488 Identities=19% Similarity=0.299 Sum_probs=406.7
Q ss_pred hHHHHHHHHHHhhhccHHHHHHHHHHHcCCCcc----HHHHHHHhhcccHHHHHHHhcCcCcccccchhhHHHHHHHHHH
Q 001477 5 SRELVFLILQFLDEEKFKETVHKLEQESGFFFN----MKHFEDQVQAGEWDEVERYLCGFTKVEDNRYSMKIFFEIRKQK 80 (1071)
Q Consensus 5 ~~e~~rli~q~L~~~g~~~s~~~L~~Esg~~~~----~~~l~~~i~~g~w~~~~~~l~~l~~~~~~~~~~~~~~~i~~~~ 80 (1071)
+.||||||.|||||+.+++++++||+|+++++| ++.|-++|.+|+||.++..+++| +++.+.+..||||.
T Consensus 7 ssdVIrli~QflKE~~L~rtl~tLQeEt~VSLNTVDSvd~Fv~dI~sG~WD~VL~~vqsL------KLP~kkL~dLYEqi 80 (508)
T KOG0275|consen 7 SSDVIRLIEQFLKENSLHRTLQTLQEETNVSLNTVDSVDGFVNDINSGHWDTVLKTVQSL------KLPDKKLIDLYEQI 80 (508)
T ss_pred cchHHHHHHHHHhhhhHHHHHHHHHHhhccceeechhHHHHHHhcccCchHHHHHHHHhc------cCchhHHHHHHHHH
Confidence 468999999999999999999999999999998 89999999999999999999888 67777899999999
Q ss_pred HHHHhcccCHHHHHHHHHhh--cccccccCHHHHHHHHHhhcccCccchhhhccCCCchhHHHHHHHHHHhhcccCcccc
Q 001477 81 YLEALDRQDRAKAVEILVKD--LKVFSSFNEELFKEITQLLTLDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFR 158 (1071)
Q Consensus 81 ~lEll~~~~~~~A~~~l~~~--~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~R~~l~~~l~~~~~~~~~~~ 158 (1071)
.|||+|.++...|..+||+. +..++..+|+||.+|+.||..+.+++++.|.+ .+.+++|..+.+.|...+..
T Consensus 81 vlEliELREL~tAR~~lRQTdpM~~lKQ~~peRy~~lE~ll~R~YFDp~EaY~d-ssKEkrRa~IAQ~ls~EV~V----- 154 (508)
T KOG0275|consen 81 VLELIELRELGTARSLLRQTDPMIMLKQIQPERYIRLENLLNRSYFDPREAYGD-SSKEKRRAVIAQALSGEVHV----- 154 (508)
T ss_pred HHHHHHHHhhhHHHHHHhccCceehhhccChHHHHHHHHHhcccccChhhhcCc-chHHHHHHHHHHHhcCceEE-----
Confidence 99999999999999999985 66677789999999999999999999998654 23455566666666555543
Q ss_pred ccCCCCCCcchHHHHHHHHHHHHHHhhCCCCCCCCCcc-ccccccccCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCC
Q 001477 159 DKLSFPSFKSSRLRTLINQSLNWQHQLCKNPRPNPDIK-TLFTDHSCNPTSNGARPPPPTNNPLVGPIPKAGQFPPIGAH 237 (1071)
Q Consensus 159 ~~~~~~~~p~~rL~~ll~qa~~~q~~~~~~~~~~~~~~-~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 237 (1071)
+||+||..||+||++||+++.+.| |+.. +||.+.....
T Consensus 155 -------VppSRLlaLlGQaLKWQqHQGLLP---PGt~iDLFRGkAA~K------------------------------- 193 (508)
T KOG0275|consen 155 -------VPPSRLLALLGQALKWQQHQGLLP---PGTTIDLFRGKAAMK------------------------------- 193 (508)
T ss_pred -------cChHHHHHHHHHHhhhHhhcCCCC---CCceeeeccchhhhh-------------------------------
Confidence 899999999999999999999987 4433 5554333322
Q ss_pred CCCCCCCCCCcccccccccCCCCCCCCCCccCCCCCCCCCCcccccccCCCCCCCCCcccccCCChhhHHhhcccCCcce
Q 001477 238 GPFQPVVSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKHPRTPTGMTGMDYQSADSDHLMKRIRTGQSDE 317 (1071)
Q Consensus 238 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (1071)
+ .+++.+|......|+|+++
T Consensus 194 -~-------------------~~Ee~~Pt~l~r~IKFg~K---------------------------------------- 213 (508)
T KOG0275|consen 194 -D-------------------QEEERYPTQLARSIKFGQK---------------------------------------- 213 (508)
T ss_pred -h-------------------hHhhhchHHhhhheecccc----------------------------------------
Confidence 0 1222333333333333332
Q ss_pred eeccCCCCCCccccCCccceeeEEeecCCCCeEEEEeecCCCeEEEEEcCCCeEEEEecCCCcccccccceeeccccccc
Q 001477 318 VSFAGVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASM 397 (1071)
Q Consensus 318 v~~s~~~~~~~~~~~d~~~~~~~~~~~h~~~V~~~~fsp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~ 397 (1071)
+-+.|..|||||+ +|++|+.||.|.+||..+|+......+..
T Consensus 214 -----------------------------Sh~EcA~FSPDgq-yLvsgSvDGFiEVWny~~GKlrKDLkYQA-------- 255 (508)
T KOG0275|consen 214 -----------------------------SHVECARFSPDGQ-YLVSGSVDGFIEVWNYTTGKLRKDLKYQA-------- 255 (508)
T ss_pred -----------------------------cchhheeeCCCCc-eEeeccccceeeeehhccchhhhhhhhhh--------
Confidence 3466899999998 79999999999999999998765422211
Q ss_pred chhhhhcccCCCCeeEEEECCCCCEEEEEeCCCeEEEEEecCCCccceeeEee-cccCCEEEEEEecCCCceEEEEEeCC
Q 001477 398 PLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEID-AHVGGVNDIAFAHPNKQLCIVTCGDD 476 (1071)
Q Consensus 398 ~~~~~~~~~h~~~v~~~~~spd~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~-~h~~~v~~~~~s~d~~~~~l~s~~~d 476 (1071)
...+.-+..+|.|+.||.|...||+|+.||.|++|.+.+|.+++ .+. +|...|+|+.||.|+. .+++++.|
T Consensus 256 ---qd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClR---rFdrAHtkGvt~l~FSrD~S--qiLS~sfD 327 (508)
T KOG0275|consen 256 ---QDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLR---RFDRAHTKGVTCLSFSRDNS--QILSASFD 327 (508)
T ss_pred ---hcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHH---HhhhhhccCeeEEEEccCcc--hhhccccc
Confidence 11145588999999999999999999999999999999999988 444 8999999999999999 68999999
Q ss_pred CcEEEEEccCCceeEEecCCCCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCceeEEecCC--CCcEEEEEEccCC-
Q 001477 477 KMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP--GNWCTMMAYSADG- 553 (1071)
Q Consensus 477 ~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~--~~~i~~~~~s~~~- 553 (1071)
.++++.-+.+|++++.|+||...|+...|.++ |+.+++++.||+|++|+..+.++...++.. ..+|.++-.-|.+
T Consensus 328 ~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~d--G~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnp 405 (508)
T KOG0275|consen 328 QTVRIHGLKSGKCLKEFRGHSSYVNEATFTDD--GHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNP 405 (508)
T ss_pred ceEEEeccccchhHHHhcCccccccceEEcCC--CCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCC
Confidence 99999999999999999999999999999875 489999999999999999999887766543 4478888877744
Q ss_pred CEEEEeccCCCCCCeEEEEeCCCCceeEEeeccc--ccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCC
Q 001477 554 TRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFR--KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGG 631 (1071)
Q Consensus 554 ~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 631 (1071)
..+++|.. .+++++.++. |+.++++.... ++..-+++.+|.|.++++.++|+.++.|.+.+|++..++..|..
T Consensus 406 eh~iVCNr----sntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEk 480 (508)
T KOG0275|consen 406 EHFIVCNR----SNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEK 480 (508)
T ss_pred ceEEEEcC----CCeEEEEecc-ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccc
Confidence 56777643 6779999987 88888886542 23456678999999999999999999999999999999987765
Q ss_pred CCCcceEEEcCCCCEEEEEeCCCcEEEEE
Q 001477 632 LPASPRLRFNKEGSLLAVTTSDNGIKILA 660 (1071)
Q Consensus 632 ~~~v~~~~~s~~~~~l~~~~~dg~v~iw~ 660 (1071)
.+..++-+|..+.+++-+.||.+++|.
T Consensus 481 --dvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 481 --DVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred --cccccccCcccchhhhhcccchhhhcC
Confidence 678999999999999999999999994
No 3
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.7e-58 Score=486.54 Aligned_cols=575 Identities=19% Similarity=0.266 Sum_probs=474.7
Q ss_pred EEeecCCCeEEEEEcCCCeEEEEecCCCcc-cccccceeecccccccchhhhhcccCCCCeeEEEECCCCCEEEEEeCCC
Q 001477 352 MDFHPQQQTILLVGTNVGDISLWEVGSRER-LAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKH 430 (1071)
Q Consensus 352 ~~fsp~g~~lla~gs~dg~i~iwd~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~la~~~~dg 430 (1071)
++||++|+ +|++... ..|.+-|+.+++. +... -......+++++.+||+++|++++...
T Consensus 25 ~~~s~nG~-~L~t~~~-d~Vi~idv~t~~~~l~s~------------------~~ed~d~ita~~l~~d~~~L~~a~rs~ 84 (775)
T KOG0319|consen 25 VAWSSNGQ-HLYTACG-DRVIIIDVATGSIALPSG------------------SNEDEDEITALALTPDEEVLVTASRSQ 84 (775)
T ss_pred eeECCCCC-EEEEecC-ceEEEEEccCCceecccC------------------CccchhhhheeeecCCccEEEEeeccc
Confidence 89999998 6777653 3688889999876 2210 234567899999999999999999999
Q ss_pred eEEEEEecCCCccceeeEeec-ccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccCCceeEEecCCCCCeEEEEecccC
Q 001477 431 IVHLYTYNPTGELRQHLEIDA-HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKE 509 (1071)
Q Consensus 431 ~i~iwd~~~~~~~~~~~~~~~-h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~ 509 (1071)
.+++|++.+++.++ .+.. |.+||.-++|+|.+. ++++|+.|+.+++||+..+.+.+.|+||.+.|.++.|+|..
T Consensus 85 llrv~~L~tgk~ir---swKa~He~Pvi~ma~~~~g~--LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~ 159 (775)
T KOG0319|consen 85 LLRVWSLPTGKLIR---SWKAIHEAPVITMAFDPTGT--LLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHW 159 (775)
T ss_pred eEEEEEcccchHhH---hHhhccCCCeEEEEEcCCCc--eEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCcc
Confidence 99999999998887 5555 999999999999997 99999999999999999999999999999999999999998
Q ss_pred CccEEEEEecCCeEEEEEcCCCce-eEEecCCCCcEEEEEEccCCCEEEEeccCCCCCCeEEEEeCCCCceeEEeecccc
Q 001477 510 SIQFIFSTAIDGKIKAWLYDYLGS-RVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK 588 (1071)
Q Consensus 510 ~~~~l~s~~~d~~i~vwd~~~~~~-~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~ 588 (1071)
....|++|+.|+++++||+..... ...+..|.+.|++++|++|+..+++++. |..+.+||+.+.+..++++...
T Consensus 160 ~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~R----Dkvi~vwd~~~~~~l~~lp~ye- 234 (775)
T KOG0319|consen 160 NRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGR----DKVIIVWDLVQYKKLKTLPLYE- 234 (775)
T ss_pred chhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEecc----CcEEEEeehhhhhhhheechhh-
Confidence 778899999999999999996555 6677889999999999999999999986 7889999998877777766554
Q ss_pred cceeEEEEeCC-----CCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 001477 589 RSLGVVQFDTT-----RNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSD 663 (1071)
Q Consensus 589 ~~v~~~~~~~~-----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~ 663 (1071)
.+-++.+-++ +.+++++|.+|.+++||.++++.+........ ..+..+...+....++..+.|..+.++|..+
T Consensus 235 -~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~-~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~ 312 (775)
T KOG0319|consen 235 -SLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDS-EEIDHLLAIESMSQLLLVTAEQNLFLYDEDE 312 (775)
T ss_pred -heeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCc-hhhhcceeccccCceEEEEccceEEEEEccc
Confidence 4667777776 67999999999999999999988877654432 2366777777666777888899999999988
Q ss_pred hhhhhhhhcCCccccccCCCCCCCCCCccccccCCCCccccccCCCCCCCCCCCCcccccccCCCCcccccccccccccc
Q 001477 664 GVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAED 743 (1071)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 743 (1071)
. ++.+.+.|..+.+..+. ++|. .+....++..
T Consensus 313 l-~i~k~ivG~ndEI~Dm~------------~lG~-----------------------------------e~~~laVATN 344 (775)
T KOG0319|consen 313 L-TIVKQIVGYNDEILDMK------------FLGP-----------------------------------EESHLAVATN 344 (775)
T ss_pred c-EEehhhcCCchhheeee------------ecCC-----------------------------------ccceEEEEeC
Confidence 8 77778888777655321 1111 1223344555
Q ss_pred cCccceeccCCCCCcccceeeecCCCcCCCceEEEEEecccchhhhccccceeEEEecccccCCCCCccceeecceeccC
Q 001477 744 VDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQP 823 (1071)
Q Consensus 744 ~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~ 823 (1071)
.+.+++|+..+... . .+++ |...|.++....+|-.|++++.|+++++|.++.+.
T Consensus 345 s~~lr~y~~~~~~c----~--ii~G--H~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~------------------ 398 (775)
T KOG0319|consen 345 SPELRLYTLPTSYC----Q--IIPG--HTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNC------------------ 398 (775)
T ss_pred CCceEEEecCCCce----E--EEeC--chhheeeeeecccCcEEEEecCCceEEEEEecCCc------------------
Confidence 68999997765332 2 3344 99999999988888889999999999999873211
Q ss_pred CCCCccccccCCCCCCCCCeEEEEEecCC-cEEEEEe-CCeEEEEECCCCeE---------EEEEeCCCCCeEEEEEcCC
Q 001477 824 PSGTLMTNDINESKPTEESAACIALSKND-SYVMSAS-GGKVSLFNMMTFKV---------MTMFMSPPPAATFLAFHPQ 892 (1071)
Q Consensus 824 ~~~~~~~~~~~~~~h~~~~v~~v~~s~d~-~~la~~~-dg~i~vwd~~~~~~---------~~~~~~~~~~i~~l~~sp~ 892 (1071)
+..... -.+.+| ...|.+++++..+ .++++++ |+++++|++...+. ..+...|...|++++++|
T Consensus 399 -~~~~~~--a~~~gH-~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~- 473 (775)
T KOG0319|consen 399 -SKSLCV--AQANGH-TNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAP- 473 (775)
T ss_pred -chhhhh--hhhccc-ccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecC-
Confidence 011111 122338 9999999998755 4788888 99999999976211 112356999999999999
Q ss_pred CCCEEEEEeCCCeEEEEEccCCeEEEEecCcCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeecCCCCCCC
Q 001477 893 DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQS 972 (1071)
Q Consensus 893 ~~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~~~v~~l~~s~d~~~l~s~~~d~~v~vWd~~~~~~~~~~~~~~~~~~~~ 972 (1071)
+.+++||||.|++.+||+++..+...++.||...|+++.|+|..+.++|+|.|++|+||.+++.. |+...+||.
T Consensus 474 ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fS-----ClkT~eGH~- 547 (775)
T KOG0319|consen 474 NDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFS-----CLKTFEGHT- 547 (775)
T ss_pred CCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccce-----eeeeecCcc-
Confidence 88999999999999999999999999999999999999999999999999999999999999977 556677887
Q ss_pred CCCCceEEEEccCCCEEEE-EECCeEEEEeC-CCCceeecCCCCCCCCCeeEEEEecCCcEEEEEeCCCeEEEEEcCC
Q 001477 973 PLVGETKVQFHNDQTHLLV-VHESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAET 1048 (1071)
Q Consensus 973 ~~~~v~~~~~s~dg~~l~~-~~d~~i~vwd~-~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~t~~~Dg~i~vwd~~~ 1048 (1071)
..|..+.|-.+|+.|++ +.||-+++|++ +..|...+ +.|++.|++++.++++..++||+.||.|.+|.=.|
T Consensus 548 --~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tl---D~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~T 620 (775)
T KOG0319|consen 548 --SAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTL---DAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVT 620 (775)
T ss_pred --ceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhh---hhccceeEEEeecCccceeEecCCCeEEEEeecCc
Confidence 67999999999999998 68999999999 88888776 66799999999999999999999999999996443
No 4
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=9.4e-54 Score=452.19 Aligned_cols=573 Identities=13% Similarity=0.216 Sum_probs=460.9
Q ss_pred eeccCCCCCCccccCC------ccceee-EEeec--CCCCeEEEEeecCCCeEEEEEcCCCeEEEEecCCCcccccccce
Q 001477 318 VSFAGVAHTPNVYSQD------DLTKTV-VRTLN--QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFK 388 (1071)
Q Consensus 318 v~~s~~~~~~~~~~~d------~~~~~~-~~~~~--h~~~V~~~~fsp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~ 388 (1071)
++|+++|+.++....+ ..++.. +.... ....+++++.+||++ .|++++..+.+++|++.+++.+..
T Consensus 25 ~~~s~nG~~L~t~~~d~Vi~idv~t~~~~l~s~~~ed~d~ita~~l~~d~~-~L~~a~rs~llrv~~L~tgk~irs---- 99 (775)
T KOG0319|consen 25 VAWSSNGQHLYTACGDRVIIIDVATGSIALPSGSNEDEDEITALALTPDEE-VLVTASRSQLLRVWSLPTGKLIRS---- 99 (775)
T ss_pred eeECCCCCEEEEecCceEEEEEccCCceecccCCccchhhhheeeecCCcc-EEEEeeccceEEEEEcccchHhHh----
Confidence 7888888887765544 234444 33333 467899999999997 788899999999999999977653
Q ss_pred eecccccccchhhhhccc-CCCCeeEEEECCCCCEEEEEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCc
Q 001477 389 VWDISAASMPLQNALLND-AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQ 467 (1071)
Q Consensus 389 ~~d~~~~~~~~~~~~~~~-h~~~v~~~~~spd~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~ 467 (1071)
.+. |++||.-++|+|.|..+|+|+.|+.++|||+..+.+.. .|.||.+.|.++.|.|+-..
T Consensus 100 ---------------wKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th---~fkG~gGvVssl~F~~~~~~ 161 (775)
T KOG0319|consen 100 ---------------WKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTH---SFKGHGGVVSSLLFHPHWNR 161 (775)
T ss_pred ---------------HhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEE---EecCCCceEEEEEeCCccch
Confidence 333 99999999999999999999999999999999987666 89999999999999998876
Q ss_pred eEEEEEeCCCcEEEEEccCCce-eEEecCCCCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCceeEEecCCCCcEEE
Q 001477 468 LCIVTCGDDKMIKVWDVVAGRK-QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTM 546 (1071)
Q Consensus 468 ~~l~s~~~d~~i~iwd~~~~~~-~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~ 546 (1071)
.+|++|..|+++++||+.+... +.++..|...|+++++.++ +..+++++.|..+.+||+...+....+.. ...+.+
T Consensus 162 ~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d--~~~~ls~~RDkvi~vwd~~~~~~l~~lp~-ye~~E~ 238 (775)
T KOG0319|consen 162 WLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSED--SLELLSVGRDKVIIVWDLVQYKKLKTLPL-YESLES 238 (775)
T ss_pred hheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccC--CceEEEeccCcEEEEeehhhhhhhheech-hhheee
Confidence 6789999999999999996654 8889999999999999986 48999999999999999965554444332 224556
Q ss_pred EEEccC-----CCEEEEeccCCCCCCeEEEEeCCCCceeEEeecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCCc
Q 001477 547 MAYSAD-----GTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN 621 (1071)
Q Consensus 547 ~~~s~~-----~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 621 (1071)
+.+-++ |.++++++. ++.+++||..+++.+..........+..+...+..+.+++...|..+.++|.++.+
T Consensus 239 vv~l~~~~~~~~~~~~TaG~----~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~ 314 (775)
T KOG0319|consen 239 VVRLREELGGKGEYIITAGG----SGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELT 314 (775)
T ss_pred EEEechhcCCcceEEEEecC----CceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccE
Confidence 666665 668888874 88899999999887765554433346666677777778888889999999999998
Q ss_pred eeEEEecCCCCCCcceEEEc-CCCCEEEEEeCCCcEEEEEcCChhhhhhhhcCCccccccCCCCCCCCCCccccccCCCC
Q 001477 622 MLTTVDADGGLPASPRLRFN-KEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPAS 700 (1071)
Q Consensus 622 ~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 700 (1071)
+...+-+.. ..|.+|.|- |+.++++++++.+.+|+|+..+... . .+.||...+.++.
T Consensus 315 i~k~ivG~n--dEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c-~-ii~GH~e~vlSL~------------------ 372 (775)
T KOG0319|consen 315 IVKQIVGYN--DEILDMKFLGPEESHLAVATNSPELRLYTLPTSYC-Q-IIPGHTEAVLSLD------------------ 372 (775)
T ss_pred EehhhcCCc--hhheeeeecCCccceEEEEeCCCceEEEecCCCce-E-EEeCchhheeeee------------------
Confidence 888876543 478888875 6788999999999999998877632 2 7788877654331
Q ss_pred ccccccCCCCCCCCCCCCcccccccCCCCcccccccccccc-cccCccceeccCCCCCcccceeeecCCCcCCCceEEEE
Q 001477 701 NVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVA-EDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLI 779 (1071)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 779 (1071)
....+.++++ +.|+++++|++++......+ .-...+|...|.+++
T Consensus 373 -------------------------------~~~~g~llat~sKD~svilWr~~~~~~~~~~---~a~~~gH~~svgava 418 (775)
T KOG0319|consen 373 -------------------------------VWSSGDLLATGSKDKSVILWRLNNNCSKSLC---VAQANGHTNSVGAVA 418 (775)
T ss_pred -------------------------------ecccCcEEEEecCCceEEEEEecCCcchhhh---hhhhcccccccceee
Confidence 1233434444 55799999999543322211 112245999999999
Q ss_pred Eecccc-hhhhccccceeEEEecccccCCCCCccceeecceeccCCCCCccccccCCCCCCCCCeEEEEEecCCcEEEEE
Q 001477 780 YTNSGL-SLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSA 858 (1071)
Q Consensus 780 ~s~~g~-~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~v~~s~d~~~la~~ 858 (1071)
++..+. .+++++.|+++++|++........ +.+... ......| ...|.|++++|+.+++|+|
T Consensus 419 ~~~~~asffvsvS~D~tlK~W~l~~s~~~~~--------~~~~~~--------~~t~~aH-dKdIN~Vaia~ndkLiAT~ 481 (775)
T KOG0319|consen 419 GSKLGASFFVSVSQDCTLKLWDLPKSKETAF--------PIVLTC--------RYTERAH-DKDINCVAIAPNDKLIATG 481 (775)
T ss_pred ecccCccEEEEecCCceEEEecCCCcccccc--------cceehh--------hHHHHhh-cccccceEecCCCceEEec
Confidence 987765 568889999999999875211110 000000 0111238 9999999999999999999
Q ss_pred e-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEccCCeEEEEecCcCCCeeEEEEcCCCC
Q 001477 859 S-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLN 937 (1071)
Q Consensus 859 ~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~~~v~~l~~s~d~~ 937 (1071)
+ |.+.+||+++..+...++.+|...|.++.|+| ..+++|++|.|++|+||.+.+..+++++.||+..|..+.|-.+|+
T Consensus 482 SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~-~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~ 560 (775)
T KOG0319|consen 482 SQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSK-NDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGK 560 (775)
T ss_pred ccccceeeecccCceEEEEeeCCccceEEEEecc-ccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCc
Confidence 9 99999999999999999999999999999999 889999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCcEEEEECCCCceeeeeeecCCCCCCCCCCCceEEEEccCCCEEEE-EECCeEEEEeC
Q 001477 938 ALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDS 1002 (1071)
Q Consensus 938 ~l~s~~~d~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~i~vwd~ 1002 (1071)
.|+||+.||.+++|++.+++ |+....+|. +.|.+++.+|.+.++++ +.|+.|.+|.=
T Consensus 561 qliS~~adGliKlWnikt~e-----C~~tlD~H~---DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD 618 (775)
T KOG0319|consen 561 QLISAGADGLIKLWNIKTNE-----CEMTLDAHN---DRVWALSVSPLLDMFVTGGGDGRIIFWKD 618 (775)
T ss_pred EEEeccCCCcEEEEeccchh-----hhhhhhhcc---ceeEEEeecCccceeEecCCCeEEEEeec
Confidence 99999999999999999977 455666776 78999999999999988 57999999975
No 5
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=2.8e-51 Score=416.22 Aligned_cols=555 Identities=16% Similarity=0.234 Sum_probs=432.4
Q ss_pred CCCCCCccccCCccceeeEEeecCCCCeEEEEeecCCCeEEEEEcCCCeEEEEecCCCcccccccceeecccccccchhh
Q 001477 322 GVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQN 401 (1071)
Q Consensus 322 ~~~~~~~~~~~d~~~~~~~~~~~h~~~V~~~~fsp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~ 401 (1071)
++|+.+.+-..+.+.. +....+|...++-..|||.|- ++|+|...|+|+|||....+.+...+|
T Consensus 36 ~nGksv~ir~i~~~~~-~~iYtEH~~~vtVAkySPsG~-yiASGD~sG~vRIWdtt~~~hiLKnef-------------- 99 (603)
T KOG0318|consen 36 TNGKSVIIRNIDNPAS-VDIYTEHAHQVTVAKYSPSGF-YIASGDVSGKVRIWDTTQKEHILKNEF-------------- 99 (603)
T ss_pred eCCCEEEEEECCCccc-eeeeccccceeEEEEeCCCce-EEeecCCcCcEEEEeccCcceeeeeee--------------
Confidence 3455555555555444 344445899999999999996 899999999999999887555544333
Q ss_pred hhcccCCCCeeEEEECCCCCEEEEEeC--CCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcE
Q 001477 402 ALLNDAAISVNRCVWGPDGLMLGVAFS--KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMI 479 (1071)
Q Consensus 402 ~~~~~h~~~v~~~~~spd~~~la~~~~--dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i 479 (1071)
..-.++|..++|++|+++|++.+. +...+++-.++|..+. ++.||...|++++|-|.... .++||++|++|
T Consensus 100 ---~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~SvG---ei~GhSr~ins~~~KpsRPf-Ri~T~sdDn~v 172 (603)
T KOG0318|consen 100 ---QVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSVG---EITGHSRRINSVDFKPSRPF-RIATGSDDNTV 172 (603)
T ss_pred ---eecccccccceeCCCCcEEEEEecCccceeEEEEecCCCccc---eeeccceeEeeeeccCCCce-EEEeccCCCeE
Confidence 345778999999999999887754 3334444444555455 78899999999999987665 89999999999
Q ss_pred EEEEccCCceeEEecCCCCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCceeEEec---CCCCcEEEEEEccCCCEE
Q 001477 480 KVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD---APGNWCTMMAYSADGTRL 556 (1071)
Q Consensus 480 ~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~---~~~~~i~~~~~s~~~~~l 556 (1071)
.+++=.--+...+++.|..-|+++.|+|++ .++++++.||+|.+||-.+++....+. .|.+.|.+++|+||++.+
T Consensus 173 ~ffeGPPFKFk~s~r~HskFV~~VRysPDG--~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~ 250 (603)
T KOG0318|consen 173 AFFEGPPFKFKSSFREHSKFVNCVRYSPDG--SRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQF 250 (603)
T ss_pred EEeeCCCeeeeecccccccceeeEEECCCC--CeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceE
Confidence 999866666677888999999999999864 899999999999999999999988887 788999999999999999
Q ss_pred EEeccCCCCCCeEEEEeCCCCceeEEeecccc---cceeEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCC
Q 001477 557 FSCGTSKEGESHLVEWNESEGAIKRTYSGFRK---RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLP 633 (1071)
Q Consensus 557 ~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 633 (1071)
++++. |.++++||+.+.++++++..... ..+. +-|. +..|++.+.+|+|.+++......+..+.+|..
T Consensus 251 ~T~Sa----Dkt~KIWdVs~~slv~t~~~~~~v~dqqvG-~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK-- 321 (603)
T KOG0318|consen 251 LTVSA----DKTIKIWDVSTNSLVSTWPMGSTVEDQQVG-CLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHNK-- 321 (603)
T ss_pred EEecC----CceEEEEEeeccceEEEeecCCchhceEEE-EEEe--CCeEEEEEcCcEEEEecccCCChhheeccccc--
Confidence 99985 77899999999999998865432 1344 3354 67899999999999999999998888887754
Q ss_pred CcceEEEcCCCCEEEEEeCCCcEEEEEcCChhhhhhhhcCCccccccCCCCCCCCCCccccccCCCCccccccCCCCCCC
Q 001477 634 ASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERP 713 (1071)
Q Consensus 634 ~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 713 (1071)
.|+++..+|++.+|++|+.||.|.-|+..++.. -
T Consensus 322 ~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~-~--------------------------------------------- 355 (603)
T KOG0318|consen 322 SITALTVSPDGKTIYSGSYDGHINSWDSGSGTS-D--------------------------------------------- 355 (603)
T ss_pred ceeEEEEcCCCCEEEeeccCceEEEEecCCccc-c---------------------------------------------
Confidence 899999999999999999999999999887711 0
Q ss_pred CCCCCcccccccCCCCcccccccccccccccCccceeccCCCCCcccceeeecCCCcCCCceEEEEEecccchhhhcccc
Q 001477 714 DRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASN 793 (1071)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~~~~~d 793 (1071)
.+.+..|...|.+++.+..+. +++.+.|
T Consensus 356 ---------------------------------------------------~~~g~~h~nqI~~~~~~~~~~-~~t~g~D 383 (603)
T KOG0318|consen 356 ---------------------------------------------------RLAGKGHTNQIKGMAASESGE-LFTIGWD 383 (603)
T ss_pred ---------------------------------------------------ccccccccceEEEEeecCCCc-EEEEecC
Confidence 011112677788888776555 7888888
Q ss_pred ceeEEEecccccCCCCCccceeecceeccCCCCCccccccCCCCCCCCCeEEEEEecCCcEEEEEeCCeEEEEECCCCeE
Q 001477 794 AVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKV 873 (1071)
Q Consensus 794 g~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~v~~s~d~~~la~~~dg~i~vwd~~~~~~ 873 (1071)
.++++.++..+.+.... . .+- .....+++..+|+..++.+.++.|.+..-.+ .
T Consensus 384 d~l~~~~~~~~~~t~~~-----------------~----~~l----g~QP~~lav~~d~~~avv~~~~~iv~l~~~~--~ 436 (603)
T KOG0318|consen 384 DTLRVISLKDNGYTKSE-----------------V----VKL----GSQPKGLAVLSDGGTAVVACISDIVLLQDQT--K 436 (603)
T ss_pred CeEEEEecccCcccccc-----------------e----eec----CCCceeEEEcCCCCEEEEEecCcEEEEecCC--c
Confidence 89988765432221110 0 011 3344589999998888877766666665222 2
Q ss_pred EEEEeCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEccCCeE--EEEecCcCCCeeEEEEcCCCCEEEEEeCCCcEEEE
Q 001477 874 MTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEV--KTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMW 951 (1071)
Q Consensus 874 ~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~--~~~l~~h~~~v~~l~~s~d~~~l~s~~~d~~v~vW 951 (1071)
+.+.. -.-...+++++| ++..+|+|+.||.|+||.+..+++ ...+..|.++|+++++|||+.+||++...+.+.+|
T Consensus 437 ~~~~~-~~y~~s~vAv~~-~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~y 514 (603)
T KOG0318|consen 437 VSSIP-IGYESSAVAVSP-DGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLY 514 (603)
T ss_pred ceeec-cccccceEEEcC-CCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEE
Confidence 22222 233568999999 999999999999999999998653 33566799999999999999999999999999999
Q ss_pred ECCCCceeeeeeecCCCCCCCCCCCceEEEEccCCCEEEEEE-CCeEEEEeC-CCCceeecCCCCCCCCCeeEEEEecCC
Q 001477 952 SIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVH-ESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDG 1029 (1071)
Q Consensus 952 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-d~~i~vwd~-~~~~~~~~~~~~~h~~~v~~~~~s~dg 1029 (1071)
|+.+.+..... ..-|. ..|.+++|+|+++++|+|+ |..|.||++ +.... +.....|...|+.+.|- |.
T Consensus 515 d~~s~~~~~~~----w~FHt---akI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~--i~iknAH~~gVn~v~wl-de 584 (603)
T KOG0318|consen 515 DVASREVKTNR----WAFHT---AKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKH--IIIKNAHLGGVNSVAWL-DE 584 (603)
T ss_pred EcccCceecce----eeeee---eeEEEEEeCCCceEEEeccccceEEEEEccChhhh--eEeccccccCceeEEEe-cC
Confidence 99997752211 11122 6799999999999999975 999999999 33333 33345678889999996 55
Q ss_pred cEEEEEeCCCeEEEEEcC
Q 001477 1030 LLVYAGFCDGAIGVFDAE 1047 (1071)
Q Consensus 1030 ~~l~t~~~Dg~i~vwd~~ 1047 (1071)
..|++.+.|.+|++|++.
T Consensus 585 ~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 585 STVVSSGQDANIKVWNVT 602 (603)
T ss_pred ceEEeccCcceeEEeccc
Confidence 678999999999999875
No 6
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.6e-50 Score=425.87 Aligned_cols=538 Identities=18% Similarity=0.275 Sum_probs=429.9
Q ss_pred ccCCCCCCccccCCccceeeEEeecCCCCeEEEEeecCCCeEEEEEcCCCeEEEEecCCCcccccccceeecccccccch
Q 001477 320 FAGVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPL 399 (1071)
Q Consensus 320 ~s~~~~~~~~~~~d~~~~~~~~~~~h~~~V~~~~fsp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~ 399 (1071)
+||.|..+.++...+.. .....+.+...|++++.||+|. +|++-.+.|...+-++.....++...
T Consensus 30 iSPvGNrvsv~dLknN~-S~Tl~~e~~~NI~~ialSp~g~-lllavdE~g~~~lvs~~~r~Vlh~f~------------- 94 (893)
T KOG0291|consen 30 ISPVGNRVSVFDLKNNK-SYTLPLETRYNITRIALSPDGT-LLLAVDERGRALLVSLLSRSVLHRFN------------- 94 (893)
T ss_pred EeccCCEEEEEEccCCc-ceeEEeecCCceEEEEeCCCce-EEEEEcCCCcEEEEecccceeeEEEe-------------
Confidence 45556666665543311 1223344788999999999996 77777889999888887766554321
Q ss_pred hhhhcccCCCCeeEEEECCCCCEEEEEeCCCeEEEEEecCCCc-----cceeeEeecccCCEEEEEEecCCCceEEEEEe
Q 001477 400 QNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGE-----LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG 474 (1071)
Q Consensus 400 ~~~~~~~h~~~v~~~~~spd~~~la~~~~dg~i~iwd~~~~~~-----~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~ 474 (1071)
-+.+|.|+.|||||+++|+|. .+.+.||....... .....++.+|...|.++.|+.|.+ +|++|+
T Consensus 95 -------fk~~v~~i~fSPng~~fav~~-gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr--~l~~gs 164 (893)
T KOG0291|consen 95 -------FKRGVGAIKFSPNGKFFAVGC-GNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSR--LLVTGS 164 (893)
T ss_pred -------ecCccceEEECCCCcEEEEEe-cceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCc--eEEecc
Confidence 356899999999999999884 45799998765322 223346678999999999999999 899999
Q ss_pred CCCcEEEEEccCCce--eEEecCCCCCeEEEEecccCCccEEEEEecCCeEEEEEcCC----------------------
Q 001477 475 DDKMIKVWDVVAGRK--QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY---------------------- 530 (1071)
Q Consensus 475 ~d~~i~iwd~~~~~~--~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~---------------------- 530 (1071)
.|.++++|+++..+. .+.+.+|.+.|.+..|..+. ..+++.+.||.+.+|....
T Consensus 165 rD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~--~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~ 242 (893)
T KOG0291|consen 165 RDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANS--LDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDE 242 (893)
T ss_pred ccceEEEEEeccccccceEeccCCCcceEEEEeccCc--ceEEEEecCceEEEEEecCCCcccccccccccccccccccc
Confidence 999999999987665 66788999999998887654 7899999999999997761
Q ss_pred -Cce-----eE------EecCCCCcEEEEEEccCCCEEEEeccCCCCCCeEEEEeCCCCceeEEeecccccceeEEEEeC
Q 001477 531 -LGS-----RV------DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT 598 (1071)
Q Consensus 531 -~~~-----~~------~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 598 (1071)
++. .. -+......+++.+|++..+.|+++-. .|...+|.+....+++.+.-... .|..++|+.
T Consensus 243 ~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFs----sG~f~LyelP~f~lih~LSis~~-~I~t~~~N~ 317 (893)
T KOG0291|consen 243 DGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFS----SGEFGLYELPDFNLIHSLSISDQ-KILTVSFNS 317 (893)
T ss_pred cchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEec----CCeeEEEecCCceEEEEeecccc-eeeEEEecc
Confidence 111 00 11122358899999999999998875 66688999999999998887666 899999999
Q ss_pred CCCEEEEEeC-CCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCChhhhhhhhcCCccc
Q 001477 599 TRNRFLAAGD-EFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMD 677 (1071)
Q Consensus 599 ~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~ 677 (1071)
.|.+++.|+. -|++.||++.+..-+...+ +|...+++++++|||+++++|++||.|++||..++ -++
T Consensus 318 tGDWiA~g~~klgQLlVweWqsEsYVlKQQ--gH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sg-fC~--------- 385 (893)
T KOG0291|consen 318 TGDWIAFGCSKLGQLLVWEWQSESYVLKQQ--GHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSG-FCF--------- 385 (893)
T ss_pred cCCEEEEcCCccceEEEEEeeccceeeecc--ccccceeeEEECCCCcEEEeccCCCcEEEEeccCc-eEE---------
Confidence 9999999874 5899999998866555554 55668999999999999999999999999998655 000
Q ss_pred cccCCCCCCCCCCccccccCCCCccccccCCCCCCCCCCCCcccccccCCCCcccccccccccccccCccceeccCCCCC
Q 001477 678 KNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISD 757 (1071)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~ 757 (1071)
T Consensus 386 -------------------------------------------------------------------------------- 385 (893)
T KOG0291|consen 386 -------------------------------------------------------------------------------- 385 (893)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccceeeecCCCcCCCceEEEEEecccchhhhccccceeEEEecccccCCCCCccceeecceeccCCCCCccccccCCCC
Q 001477 758 PSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESK 837 (1071)
Q Consensus 758 ~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 837 (1071)
+. +..
T Consensus 386 --------------------vT-----------------------------------------------------Fte-- 390 (893)
T KOG0291|consen 386 --------------------VT-----------------------------------------------------FTE-- 390 (893)
T ss_pred --------------------EE-----------------------------------------------------ecc--
Confidence 00 111
Q ss_pred CCCCCeEEEEEecCCcEEEEEe-CCeEEEEECCCCeEEEEEeCCCC-CeEEEEEcCCCCCEEEEEeCCC-eEEEEEccCC
Q 001477 838 PTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPP-AATFLAFHPQDNNIIAIGMEDS-SVQIYNVRVD 914 (1071)
Q Consensus 838 h~~~~v~~v~~s~d~~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~-~i~~l~~sp~~~~~la~g~~dg-~v~vwd~~~~ 914 (1071)
| ...|+.+.|+.+|+.+++.+ ||+|+.||+...+..+++..+.. ...|++..| .|.++..|+.|. .|+||++++|
T Consensus 391 H-ts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~-sGelV~AG~~d~F~IfvWS~qTG 468 (893)
T KOG0291|consen 391 H-TSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDP-SGELVCAGAQDSFEIFVWSVQTG 468 (893)
T ss_pred C-CCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcC-CCCEEEeeccceEEEEEEEeecC
Confidence 7 88999999999999999999 99999999999999999987664 468899999 888998898886 6999999999
Q ss_pred eEEEEecCcCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeecCCCCCCCCCCCceEEEEccCCCEEEEE-E
Q 001477 915 EVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-H 993 (1071)
Q Consensus 915 ~~~~~l~~h~~~v~~l~~s~d~~~l~s~~~d~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~ 993 (1071)
+++..+.||.++|.+++|+|++..|||+|.|.+|++||+-........ +.. ...+..++|+|||+.||++ -
T Consensus 469 qllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEt-l~i-------~sdvl~vsfrPdG~elaVaTl 540 (893)
T KOG0291|consen 469 QLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVET-LEI-------RSDVLAVSFRPDGKELAVATL 540 (893)
T ss_pred eeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeee-Eee-------ccceeEEEEcCCCCeEEEEEe
Confidence 999999999999999999999999999999999999998764322111 111 1458999999999999995 6
Q ss_pred CCeEEEEeC-CCCceeecCC------C-----------CCCCCCeeEEEEecCCcEEEEEeCCCeEEEEEcCCCeEEEEe
Q 001477 994 ESQISVYDS-KLECSRSWSP------K-----------DALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRI 1055 (1071)
Q Consensus 994 d~~i~vwd~-~~~~~~~~~~------~-----------~~h~~~v~~~~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~ 1055 (1071)
||.|.+||+ .......+.. . .......+++++|+||.+|++|+....|++|++.++.++.++
T Consensus 541 dgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkkf 620 (893)
T KOG0291|consen 541 DGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLKKF 620 (893)
T ss_pred cceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhheeeeE
Confidence 999999999 3333321111 1 112468899999999999999999999999999999999999
Q ss_pred CCCcccCccce
Q 001477 1056 GPSAYIPTYAV 1066 (1071)
Q Consensus 1056 ~~~~~~~~~~~ 1066 (1071)
..+.++.-..+
T Consensus 621 qiS~N~sLdg~ 631 (893)
T KOG0291|consen 621 QISDNRSLDGV 631 (893)
T ss_pred EeccccchhHH
Confidence 99888765543
No 7
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.5e-49 Score=418.46 Aligned_cols=592 Identities=13% Similarity=0.211 Sum_probs=451.6
Q ss_pred CcceeeccCCCCCCccccCCc-------cceeeEEeecCCCCeEEEEeecCCCeEEEEEcCCCeEEEEecCCCccccccc
Q 001477 314 QSDEVSFAGVAHTPNVYSQDD-------LTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKP 386 (1071)
Q Consensus 314 ~~~~v~~s~~~~~~~~~~~d~-------~~~~~~~~~~h~~~V~~~~fsp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~ 386 (1071)
.+.+++.||+|..+.+....+ ....++..+.-..+|.|+.|||+|+ ++|+|. .+-+.||.......-....
T Consensus 57 NI~~ialSp~g~lllavdE~g~~~lvs~~~r~Vlh~f~fk~~v~~i~fSPng~-~fav~~-gn~lqiw~~P~~~~~~~~p 134 (893)
T KOG0291|consen 57 NITRIALSPDGTLLLAVDERGRALLVSLLSRSVLHRFNFKRGVGAIKFSPNGK-FFAVGC-GNLLQIWHAPGEIKNEFNP 134 (893)
T ss_pred ceEEEEeCCCceEEEEEcCCCcEEEEecccceeeEEEeecCccceEEECCCCc-EEEEEe-cceeEEEecCcchhcccCc
Confidence 567799999998766554442 2344556666788999999999998 666654 5689999976433211111
Q ss_pred ceeecccccccchhhhhcccCCCCeeEEEECCCCCEEEEEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCC
Q 001477 387 FKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNK 466 (1071)
Q Consensus 387 ~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~ 466 (1071)
|. ....+.+|-..|+++.||.|.++|++|+.|-++++|+++..+.+. ...+.+|...|.++-|..+..
T Consensus 135 Fv-----------l~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~-~~~l~gHkd~VvacfF~~~~~ 202 (893)
T KOG0291|consen 135 FV-----------LHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLF-TYALNGHKDYVVACFFGANSL 202 (893)
T ss_pred ce-----------EeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccc-eEeccCCCcceEEEEeccCcc
Confidence 11 122367899999999999999999999999999999999877643 347889999999999999888
Q ss_pred ceEEEEEeCCCcEEEEEccC-----------------------Cce-----------eEEecCCCCCeEEEEecccCCcc
Q 001477 467 QLCIVTCGDDKMIKVWDVVA-----------------------GRK-----------QYTFEGHEAPVYSVCPHHKESIQ 512 (1071)
Q Consensus 467 ~~~l~s~~~d~~i~iwd~~~-----------------------~~~-----------~~~~~~h~~~v~~i~~~~~~~~~ 512 (1071)
-++|.+.||.+.+|.... ++. .+-+......|++.+|++.. +
T Consensus 203 --~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t--~ 278 (893)
T KOG0291|consen 203 --DLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGT--N 278 (893)
T ss_pred --eEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCc--e
Confidence 799999999999997651 111 01122234789999999865 8
Q ss_pred EEEEEecCCeEEEEEcCCCceeEEecCCCCcEEEEEEccCCCEEEEeccCCCCCCeEEEEeCCCCceeEEeeccccccee
Q 001477 513 FIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLG 592 (1071)
Q Consensus 513 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~v~ 592 (1071)
.|++|-..|...+|++.....+..+......|..++|+..|.+++.++. +-|++.+|+.++...+...++|.. .+.
T Consensus 279 ~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~---klgQLlVweWqsEsYVlKQQgH~~-~i~ 354 (893)
T KOG0291|consen 279 LLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCS---KLGQLLVWEWQSESYVLKQQGHSD-RIT 354 (893)
T ss_pred EEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCC---ccceEEEEEeeccceeeecccccc-cee
Confidence 9999999999999999999999988888899999999999999999885 478999999999999989999988 899
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCChhhhhhhhc
Q 001477 593 VVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLE 672 (1071)
Q Consensus 593 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~ 672 (1071)
+++++|||+++++|++||.|+|||...+-++.++..|.. .|+.+.|+..|+.+++.+-||+|+.||+... +.++++.
T Consensus 355 ~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts--~Vt~v~f~~~g~~llssSLDGtVRAwDlkRY-rNfRTft 431 (893)
T KOG0291|consen 355 SLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTS--GVTAVQFTARGNVLLSSSLDGTVRAWDLKRY-RNFRTFT 431 (893)
T ss_pred eEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCC--ceEEEEEEecCCEEEEeecCCeEEeeeeccc-ceeeeec
Confidence 999999999999999999999999999999999987654 8999999999999999999999999999766 3333332
Q ss_pred CCccccccCCCCCCCCCCccccccCCCCccccccCCCCCCCCCCCCcccccccCCCCcccccccccccccccCccceecc
Q 001477 673 GRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRI 752 (1071)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~ 752 (1071)
..
T Consensus 432 ~P------------------------------------------------------------------------------ 433 (893)
T KOG0291|consen 432 SP------------------------------------------------------------------------------ 433 (893)
T ss_pred CC------------------------------------------------------------------------------
Confidence 21
Q ss_pred CCCCCcccceeeecCCCcCCCceEEEEEecccchhhhccccceeEEEecccccCCCCCccceeecceeccCCCCCccccc
Q 001477 753 PDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTND 832 (1071)
Q Consensus 753 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 832 (1071)
..-...+++..|.|..+++|+.|. +.+.+|++.+|+++..
T Consensus 434 ------------------~p~QfscvavD~sGelV~AG~~d~---------------------F~IfvWS~qTGqllDi- 473 (893)
T KOG0291|consen 434 ------------------EPIQFSCVAVDPSGELVCAGAQDS---------------------FEIFVWSVQTGQLLDI- 473 (893)
T ss_pred ------------------CceeeeEEEEcCCCCEEEeeccce---------------------EEEEEEEeecCeeeeh-
Confidence 123357888999999888887763 1244667778887654
Q ss_pred cCCCCCCCCCeEEEEEecCCcEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEc
Q 001477 833 INESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNV 911 (1071)
Q Consensus 833 ~~~~~h~~~~v~~v~~s~d~~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~ 911 (1071)
+.| | +++|.+++|+|++..||+++ |.+|++||+-......+--.+...+.+++|+| +|+-||+++-||.|.+||.
T Consensus 474 LsG--H-EgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrP-dG~elaVaTldgqItf~d~ 549 (893)
T KOG0291|consen 474 LSG--H-EGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRP-DGKELAVATLDGQITFFDI 549 (893)
T ss_pred hcC--C-CCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcC-CCCeEEEEEecceEEEEEh
Confidence 677 9 99999999999999999999 99999999865433333333777899999999 9999999999999999998
Q ss_pred cCCeEEEEecC--------------------cCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeecCCCCCC
Q 001477 912 RVDEVKTKLKG--------------------HQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQ 971 (1071)
Q Consensus 912 ~~~~~~~~l~~--------------------h~~~v~~l~~s~d~~~l~s~~~d~~v~vWd~~~~~~~~~~~~~~~~~~~ 971 (1071)
..+..+..+.+ .....+.+++|+||..+++||....|++|++.++-.++...+.....-.
T Consensus 550 ~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkkfqiS~N~sLd 629 (893)
T KOG0291|consen 550 KEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLKKFQISDNRSLD 629 (893)
T ss_pred hhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhheeeeEEeccccchh
Confidence 87654433321 2356899999999999999999999999999998877765554332211
Q ss_pred CCCCCceEEEEccCCCEEEEEE-----CCeEEE-------EeCCCCceeecCCCCCCCCCeeEEEEecCCcEEEEEeCCC
Q 001477 972 SPLVGETKVQFHNDQTHLLVVH-----ESQISV-------YDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDG 1039 (1071)
Q Consensus 972 ~~~~~v~~~~~s~dg~~l~~~~-----d~~i~v-------wd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~t~~~Dg 1039 (1071)
....-...=.+.+-|..-.+-. ++.|-+ +|+..+ ...+ .-.|+++.|||.|+-+++++..|
T Consensus 630 g~~efln~rkmtEfG~~~LiD~e~~~~e~~i~~~lpG~~~gdlssR---r~rp----eIrv~sv~fsPtgraFAaatTEG 702 (893)
T KOG0291|consen 630 GVLEFLNRRKMTEFGNMDLIDTEESDLEGRIDIALPGVQRGDLSSR---RFRP----EIRVTSVQFSPTGRAFAAATTEG 702 (893)
T ss_pred HHHHHhccccccccCCccccccccccccccccccCCccccCCcccc---ccCc----eEEEEEEEECCCcCeeeeecccc
Confidence 1001122223333333322210 122111 111101 0000 33688999999999999998887
Q ss_pred eEEEEEcCCCeEEEEeCCCcc
Q 001477 1040 AIGVFDAETLRFRCRIGPSAY 1060 (1071)
Q Consensus 1040 ~i~vwd~~~~~~~~~~~~~~~ 1060 (1071)
|.||.+.+.-+.-.+.....
T Consensus 703 -l~IYsld~~~~FDPf~LD~~ 722 (893)
T KOG0291|consen 703 -LLIYSLDTTILFDPFDLDVD 722 (893)
T ss_pred -eEEEecCCceEEcccccccc
Confidence 78999988777655544433
No 8
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=2.1e-48 Score=395.36 Aligned_cols=534 Identities=14% Similarity=0.194 Sum_probs=413.0
Q ss_pred EEeecCCCeEEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeEEEECCCCCEEEEEeCCCe
Q 001477 352 MDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHI 431 (1071)
Q Consensus 352 ~~fsp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~la~~~~dg~ 431 (1071)
+.-.|.|+.+|.+. ...|.+-++++..... ++.+|..+++-..|||.|-|+|+|...|.
T Consensus 24 ig~dpkgd~ilY~n--Gksv~ir~i~~~~~~~-------------------iYtEH~~~vtVAkySPsG~yiASGD~sG~ 82 (603)
T KOG0318|consen 24 IGGDPKGDNILYTN--GKSVIIRNIDNPASVD-------------------IYTEHAHQVTVAKYSPSGFYIASGDVSGK 82 (603)
T ss_pred eccCCCCCeEEEeC--CCEEEEEECCCcccee-------------------eeccccceeEEEEeCCCceEEeecCCcCc
Confidence 44567788888765 3478888887765432 37889999999999999999999999999
Q ss_pred EEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEE-eCCCcEEEEEccCCceeEEecCCCCCeEEEEecccCC
Q 001477 432 VHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTC-GDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKES 510 (1071)
Q Consensus 432 i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~ 510 (1071)
|+|||....+.+ ...+++.-.++|.+++|+.|+++ +.++| +.++..+++-..+|..+..+.||...|+++.|-|..+
T Consensus 83 vRIWdtt~~~hi-LKnef~v~aG~I~Di~Wd~ds~R-I~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~KpsRP 160 (603)
T KOG0318|consen 83 VRIWDTTQKEHI-LKNEFQVLAGPIKDISWDFDSKR-IAAVGEGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKPSRP 160 (603)
T ss_pred EEEEeccCccee-eeeeeeecccccccceeCCCCcE-EEEEecCccceeEEEEecCCCccceeeccceeEeeeeccCCCc
Confidence 999998764332 23367778899999999999995 33444 3333344444448888999999999999999998765
Q ss_pred ccEEEEEecCCeEEEEEcCCCceeEEecCCCCcEEEEEEccCCCEEEEeccCCCCCCeEEEEeCCCCceeEEee---ccc
Q 001477 511 IQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS---GFR 587 (1071)
Q Consensus 511 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~---~~~ 587 (1071)
-.+++|+.|++|-+|+-..-+....+..|..-|+|+.|+|||..+++++. |+++.+||-.+|+.+..+. +|.
T Consensus 161 -fRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gs----Dgki~iyDGktge~vg~l~~~~aHk 235 (603)
T KOG0318|consen 161 -FRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGS----DGKIYIYDGKTGEKVGELEDSDAHK 235 (603)
T ss_pred -eEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecC----CccEEEEcCCCccEEEEecCCCCcc
Confidence 68999999999999976666666677788889999999999999999986 8889999999999999998 666
Q ss_pred ccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCC-CCcceEEEcCCCCEEEEEeCCCcEEEEEcCChhh
Q 001477 588 KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGL-PASPRLRFNKEGSLLAVTTSDNGIKILANSDGVR 666 (1071)
Q Consensus 588 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~ 666 (1071)
+ .|.+++|+||+..+++++.|.+++|||+.+.+++.++...... ..-..+.|. ...|++.+-+|+|.+++...+ .
T Consensus 236 G-sIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~-~ 311 (603)
T KOG0318|consen 236 G-SIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDP-S 311 (603)
T ss_pred c-cEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCC-C
Confidence 6 8999999999999999999999999999999999998755431 122345565 568999999999999998776 2
Q ss_pred hhhhhcCCccccccCCCCCCCCCCccccccCCCCccccccCCCCCCCCCCCCcccccccCCCCcccccccccccccccCc
Q 001477 667 LLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDK 746 (1071)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 746 (1071)
..+.+.+
T Consensus 312 ~~~~i~G------------------------------------------------------------------------- 318 (603)
T KOG0318|consen 312 VLKVISG------------------------------------------------------------------------- 318 (603)
T ss_pred hhheecc-------------------------------------------------------------------------
Confidence 4444333
Q ss_pred cceeccCCCCCcccceeeecCCCcCCCceEEEEEecccchhhhccccceeEEEecccccCCCCCccceeecceeccCCCC
Q 001477 747 IKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSG 826 (1071)
Q Consensus 747 v~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~ 826 (1071)
|...|+++..+||+++|++++.||.|.-|+...+
T Consensus 319 ------------------------HnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g---------------------- 352 (603)
T KOG0318|consen 319 ------------------------HNKSITALTVSPDGKTIYSGSYDGHINSWDSGSG---------------------- 352 (603)
T ss_pred ------------------------cccceeEEEEcCCCCEEEeeccCceEEEEecCCc----------------------
Confidence 6677999999999999999999999999976532
Q ss_pred CccccccCCCCCCCCCeEEEEEecCCcEEEEEeCCeEEEEECCCCeEEEE--EeCCCCCeEEEEEcCCCCCEEEEEeCCC
Q 001477 827 TLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTM--FMSPPPAATFLAFHPQDNNIIAIGMEDS 904 (1071)
Q Consensus 827 ~~~~~~~~~~~h~~~~v~~v~~s~d~~~la~~~dg~i~vwd~~~~~~~~~--~~~~~~~i~~l~~sp~~~~~la~g~~dg 904 (1071)
..-. +.+..| ...|.+++.+..+.++.++-|.++++.++........ ++-.. ...+++..+ ++.+++.++.++
T Consensus 353 ~~~~--~~g~~h-~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~-QP~~lav~~-d~~~avv~~~~~ 427 (603)
T KOG0318|consen 353 TSDR--LAGKGH-TNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGS-QPKGLAVLS-DGGTAVVACISD 427 (603)
T ss_pred cccc--cccccc-cceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCC-CceeEEEcC-CCCEEEEEecCc
Confidence 2211 333448 9999999998888887777799999999865433222 12122 233888888 666666666555
Q ss_pred eEEEEEccCCeEEEEecCcCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeecCCCCCCCCCCCceEEEEcc
Q 001477 905 SVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHN 984 (1071)
Q Consensus 905 ~v~vwd~~~~~~~~~l~~h~~~v~~l~~s~d~~~l~s~~~d~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 984 (1071)
|.+..-.++- .++. -.-...+++++|++..++.|+.|+.|++|.+...+........... ++|+.++|||
T Consensus 428 -iv~l~~~~~~--~~~~-~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~------a~iT~vaySp 497 (603)
T KOG0318|consen 428 -IVLLQDQTKV--SSIP-IGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHR------AAITDVAYSP 497 (603)
T ss_pred -EEEEecCCcc--eeec-cccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeeccc------CCceEEEECC
Confidence 4444322222 1222 2234678999999999999999999999999987744332222222 6799999999
Q ss_pred CCCEEEEEE-CCeEEEEeCCCCceeecCCCCCCCCCeeEEEEecCCcEEEEEeCCCeEEEEEcCCCeEE
Q 001477 985 DQTHLLVVH-ESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFR 1052 (1071)
Q Consensus 985 dg~~l~~~~-d~~i~vwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~ 1052 (1071)
|+.|||+++ .+.+.+||+..+.. ......-|...|.+++|||+.+++|||+.|-+|.||+++.-...
T Consensus 498 d~~yla~~Da~rkvv~yd~~s~~~-~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~ 565 (603)
T KOG0318|consen 498 DGAYLAAGDASRKVVLYDVASREV-KTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKH 565 (603)
T ss_pred CCcEEEEeccCCcEEEEEcccCce-ecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhh
Confidence 999999985 78999999955544 33333457999999999999999999999999999999654433
No 9
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.5e-49 Score=418.28 Aligned_cols=502 Identities=14% Similarity=0.279 Sum_probs=401.9
Q ss_pred CCCCeEEEEeecCCCeEEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeEEEECCCCCEEE
Q 001477 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1071)
Q Consensus 345 h~~~V~~~~fsp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~la 424 (1071)
...+|+|+.-+|+.- +||+|..||.|+||+..++..+.. +.+|+.+|+++.|...|..||
T Consensus 64 ~k~evt~l~~~~d~l-~lAVGYaDGsVqif~~~s~~~~~t-------------------fngHK~AVt~l~fd~~G~rla 123 (888)
T KOG0306|consen 64 KKAEVTCLRSSDDIL-LLAVGYADGSVQIFSLESEEILIT-------------------FNGHKAAVTTLKFDKIGTRLA 123 (888)
T ss_pred ccceEEEeeccCCcc-eEEEEecCceEEeeccCCCceeee-------------------ecccccceEEEEEcccCceEe
Confidence 456999999999996 899999999999999987755443 789999999999999999999
Q ss_pred EEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccCCceeEEecCCCCCeEEEE
Q 001477 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 504 (1071)
Q Consensus 425 ~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~ 504 (1071)
+||.|+.|.+||+-...... .+.||...|+.+-|..+.+ ++++.+.|+.|++||+.+..|..+.-.|.+.+++++
T Consensus 124 SGskDt~IIvwDlV~E~Gl~---rL~GHkd~iT~~~F~~~~~--~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~ 198 (888)
T KOG0306|consen 124 SGSKDTDIIVWDLVGEEGLF---RLRGHKDSITQALFLNGDS--FLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALV 198 (888)
T ss_pred ecCCCccEEEEEeccceeeE---EeecchHHHhHHhccCCCe--EEEEeccCceEEEEecccceeeeEEecccceEEEEE
Confidence 99999999999998765444 7889999999999998666 899999999999999999999999999999999999
Q ss_pred ecccCCccEEEEEecCCeEEEEEcCCCcee------E-------EecCC-------------------------------
Q 001477 505 PHHKESIQFIFSTAIDGKIKAWLYDYLGSR------V-------DYDAP------------------------------- 540 (1071)
Q Consensus 505 ~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~------~-------~~~~~------------------------------- 540 (1071)
+.+ +.+++++.|+.+++|++...... . .....
T Consensus 199 ~~~----~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~ 274 (888)
T KOG0306|consen 199 LDE----KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIR 274 (888)
T ss_pred Eec----ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeec
Confidence 975 68999999999999998210000 0 00000
Q ss_pred ---------------------------------------------CCcEEEEEEccCCCE---EEEeccCCCCCCeEEEE
Q 001477 541 ---------------------------------------------GNWCTMMAYSADGTR---LFSCGTSKEGESHLVEW 572 (1071)
Q Consensus 541 ---------------------------------------------~~~i~~~~~s~~~~~---l~~~~~~~d~~~~i~iw 572 (1071)
...+.++.|.|+++. |+.-. ++.+..|
T Consensus 275 s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~-----nNtv~~y 349 (888)
T KOG0306|consen 275 SKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLA-----NNTVEWY 349 (888)
T ss_pred CHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEee-----cCceEEE
Confidence 112334445443322 22211 3446666
Q ss_pred eCCC-Cce--------eEEeecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCC
Q 001477 573 NESE-GAI--------KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKE 643 (1071)
Q Consensus 573 d~~~-~~~--------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~ 643 (1071)
.+.. +.. .-++.+|.. .|.+++++.+...+++|+ .+.+++|+..+.+++.++... .+.+..|-|.
T Consensus 350 sl~~s~~~~p~~~~~~~i~~~GHR~-dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~----y~l~~~Fvpg 423 (888)
T KOG0306|consen 350 SLENSGKTSPEADRTSNIEIGGHRS-DVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITCG----YILASKFVPG 423 (888)
T ss_pred EeccCCCCCccccccceeeeccchh-heeEEEeecCceeeeecC-CCcEEEEEccCcceeEEeccc----cEEEEEecCC
Confidence 5543 111 124556766 899999998876666654 568999999999999998743 6789999999
Q ss_pred CCEEEEEeCCCcEEEEEcCChhhhhhhhcCCccccccCCCCCCCCCCccccccCCCCccccccCCCCCCCCCCCCccccc
Q 001477 644 GSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSIS 723 (1071)
Q Consensus 644 ~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 723 (1071)
++++++|...|.+.+||+.+. .++.++++
T Consensus 424 d~~Iv~G~k~Gel~vfdlaS~-~l~Eti~A-------------------------------------------------- 452 (888)
T KOG0306|consen 424 DRYIVLGTKNGELQVFDLASA-SLVETIRA-------------------------------------------------- 452 (888)
T ss_pred CceEEEeccCCceEEEEeehh-hhhhhhhc--------------------------------------------------
Confidence 999999999999999999877 44444332
Q ss_pred ccCCCCcccccccccccccccCccceeccCCCCCcccceeeecCCCcCCCceEEEEEecccchhhhccccceeEEEeccc
Q 001477 724 SLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQR 803 (1071)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~~~~~dg~v~vw~~~~ 803 (1071)
|.+.|.+++.+||++.+++++.|.+|++|+...
T Consensus 453 -----------------------------------------------HdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l 485 (888)
T KOG0306|consen 453 -----------------------------------------------HDGAIWSISLSPDNKGFVTGSADKTVKFWDFKL 485 (888)
T ss_pred -----------------------------------------------cccceeeeeecCCCCceEEecCCcEEEEEeEEE
Confidence 677889999999999999999999999998764
Q ss_pred ccCCCCCccceeecceeccCCCCCccccccCCCCCCCCCeEEEEEecCCcEEEEEe-CCeEEEEECCCCeEEEEEeCCCC
Q 001477 804 TERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPP 882 (1071)
Q Consensus 804 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~v~~s~d~~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~ 882 (1071)
-.. ..|... ++..+...+ .+.- ...|.|+++||||++||++- |.+++||-+++.+....+.||.-
T Consensus 486 ~~~-~~gt~~-----k~lsl~~~r----tLel----~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkL 551 (888)
T KOG0306|consen 486 VVS-VPGTQK-----KVLSLKHTR----TLEL----EDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKL 551 (888)
T ss_pred Eec-cCcccc-----eeeeeccce----EEec----cccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeeccccc
Confidence 211 111100 000111111 1222 67899999999999999998 99999999999999999999999
Q ss_pred CeEEEEEcCCCCCEEEEEeCCCeEEEEEccCCeEEEEecCcCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeee
Q 001477 883 AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSR 962 (1071)
Q Consensus 883 ~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~~~v~~l~~s~d~~~l~s~~~d~~v~vWd~~~~~~~~~~ 962 (1071)
+|.|+..|| |+++++||+.|++|+||-++-|.|.+.+-+|.+.|.++.|-|+...++|||.|+.|+-||-+..+.+
T Consensus 552 PV~smDIS~-DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~i--- 627 (888)
T KOG0306|consen 552 PVLSMDISP-DSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEI--- 627 (888)
T ss_pred ceeEEeccC-CcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhh---
Confidence 999999999 9999999999999999999999999999999999999999999999999999999999997774422
Q ss_pred eecCCCCCCCCCCCceEEEEccCCCEEEEEECCeEEEEeCCCCceeecCCCCCCCCCeeEEEEecCCcEEEEEeCCCeEE
Q 001477 963 FIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIG 1042 (1071)
Q Consensus 963 ~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~t~~~Dg~i~ 1042 (1071)
....+|...|+|++.+|+|.++++++.|.+|+
T Consensus 628 ------------------------------------------------q~L~~H~~ev~cLav~~~G~~vvs~shD~sIR 659 (888)
T KOG0306|consen 628 ------------------------------------------------QKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIR 659 (888)
T ss_pred ------------------------------------------------eeeccchheeeeeEEcCCCCeEEeccCCceeE
Confidence 11245678899999999999999999999999
Q ss_pred EEEcCCCe
Q 001477 1043 VFDAETLR 1050 (1071)
Q Consensus 1043 vwd~~~~~ 1050 (1071)
+|....-.
T Consensus 660 lwE~tde~ 667 (888)
T KOG0306|consen 660 LWERTDEI 667 (888)
T ss_pred eeeccCcc
Confidence 99876533
No 10
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.9e-51 Score=396.81 Aligned_cols=367 Identities=20% Similarity=0.307 Sum_probs=305.7
Q ss_pred cccCCCCeeEEEECCCCCEEEEEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEE
Q 001477 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1071)
Q Consensus 404 ~~~h~~~v~~~~~spd~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd 483 (1071)
+.||.++|.|++|+|+|+.||+|+.|.++++||+.+..... +..+|...|.|++|+|||+ .|++|+.||+|++||
T Consensus 111 ~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~---t~KgH~~WVlcvawsPDgk--~iASG~~dg~I~lwd 185 (480)
T KOG0271|consen 111 IAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLF---TCKGHKNWVLCVAWSPDGK--KIASGSKDGSIRLWD 185 (480)
T ss_pred cCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcce---eecCCccEEEEEEECCCcc--hhhccccCCeEEEec
Confidence 67899999999999999999999999999999999987665 8889999999999999999 899999999999999
Q ss_pred ccCCcee-EEecCCCCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCceeEEecCCCCcEEEEEEccCCCEEEEeccC
Q 001477 484 VVAGRKQ-YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTS 562 (1071)
Q Consensus 484 ~~~~~~~-~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~ 562 (1071)
..+|+++ ..|.+|...|++++|.|-. ..|.+++|++++
T Consensus 186 pktg~~~g~~l~gH~K~It~Lawep~h---------------------------------------l~p~~r~las~s-- 224 (480)
T KOG0271|consen 186 PKTGQQIGRALRGHKKWITALAWEPLH---------------------------------------LVPPCRRLASSS-- 224 (480)
T ss_pred CCCCCcccccccCcccceeEEeecccc---------------------------------------cCCCccceeccc--
Confidence 9998876 5789999999999998742 236677888876
Q ss_pred CCCCCeEEEEeCCCCceeEEeecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcC
Q 001477 563 KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK 642 (1071)
Q Consensus 563 ~d~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 642 (1071)
+|+.++|||+..+.++..+.+|.. +|+|+.|..+ .++++|+.|++|++|+...|.+...+.+|.+ .|+.++.+.
T Consensus 225 --kDg~vrIWd~~~~~~~~~lsgHT~-~VTCvrwGG~-gliySgS~DrtIkvw~a~dG~~~r~lkGHah--wvN~lalsT 298 (480)
T KOG0271|consen 225 --KDGSVRIWDTKLGTCVRTLSGHTA-SVTCVRWGGE-GLIYSGSQDRTIKVWRALDGKLCRELKGHAH--WVNHLALST 298 (480)
T ss_pred --CCCCEEEEEccCceEEEEeccCcc-ceEEEEEcCC-ceEEecCCCceEEEEEccchhHHHhhcccch--heeeeeccc
Confidence 377799999999999999999998 9999999876 4899999999999999999999999998877 899998876
Q ss_pred CCCEEEEEeCCCcEEEEEcCChhhhhhhhcCCccccccCCCCCCCCCCccccccCCCCccccccCCCCCCCCCCCCcccc
Q 001477 643 EGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSI 722 (1071)
Q Consensus 643 ~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 722 (1071)
|- .|-+|..|.+=+-....+. ...+.+.....
T Consensus 299 dy-~LRtgaf~~t~~~~~~~se-~~~~Al~rY~~---------------------------------------------- 330 (480)
T KOG0271|consen 299 DY-VLRTGAFDHTGRKPKSFSE-EQKKALERYEA---------------------------------------------- 330 (480)
T ss_pred hh-hhhccccccccccCCChHH-HHHHHHHHHHH----------------------------------------------
Confidence 53 3334443322111111111 11111111100
Q ss_pred cccCCCCcccccccccccccccCccceeccCCCCCcccceeeecCCCcCCCceEEEEEecccchhhhccccceeEEEecc
Q 001477 723 SSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQ 802 (1071)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~~~~~dg~v~vw~~~ 802 (1071)
+.-..+..|++++.|.++.+|+..
T Consensus 331 --------------------------------------------------------~~~~~~erlVSgsDd~tlflW~p~ 354 (480)
T KOG0271|consen 331 --------------------------------------------------------VLKDSGERLVSGSDDFTLFLWNPF 354 (480)
T ss_pred --------------------------------------------------------hhccCcceeEEecCCceEEEeccc
Confidence 000123568899999999998643
Q ss_pred cccCCCCCccceeecceeccCCCCCccccccCCCCCCCCCeEEEEEecCCcEEEEEe-CCeEEEEECCCCeEEEEEeCCC
Q 001477 803 RTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPP 881 (1071)
Q Consensus 803 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~v~~s~d~~~la~~~-dg~i~vwd~~~~~~~~~~~~~~ 881 (1071)
. +.+++. .+.+ | ..-|..+.||||++++|+++ |..|++||..+|+.+.+|++|-
T Consensus 355 ~---------------------~kkpi~-rmtg--H-q~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv 409 (480)
T KOG0271|consen 355 K---------------------SKKPIT-RMTG--H-QALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHV 409 (480)
T ss_pred c---------------------cccchh-hhhc--h-hhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhcc
Confidence 2 222222 2444 8 89999999999999999999 9999999999999999999999
Q ss_pred CCeEEEEEcCCCCCEEEEEeCCCeEEEEEccCCeEEEEecCcCCCeeEEEEcCCCCEEEEEeCCCcEEEEE
Q 001477 882 PAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 952 (1071)
Q Consensus 882 ~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~~~v~~l~~s~d~~~l~s~~~d~~v~vWd 952 (1071)
..|..++||. |.++|++|+.|.++++|++.+.++...|.||.++|.++.|+|||..+++++.|+.+++|.
T Consensus 410 ~~VYqvawsa-DsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 410 AAVYQVAWSA-DSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred ceeEEEEecc-CccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 9999999999 999999999999999999999999999999999999999999999999999999999995
No 11
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.2e-49 Score=386.32 Aligned_cols=289 Identities=20% Similarity=0.353 Sum_probs=261.0
Q ss_pred eec-CCCCeEEEEeecCCCeEEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeEEEECCCC
Q 001477 342 TLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDG 420 (1071)
Q Consensus 342 ~~~-h~~~V~~~~fsp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd~ 420 (1071)
.+. |.+.|.|++|+|+|+ .||+|+.|.++++||+.+..+..+ .++|...|.|++|||||
T Consensus 110 S~~GH~e~Vl~~~fsp~g~-~l~tGsGD~TvR~WD~~TeTp~~t-------------------~KgH~~WVlcvawsPDg 169 (480)
T KOG0271|consen 110 SIAGHGEAVLSVQFSPTGS-RLVTGSGDTTVRLWDLDTETPLFT-------------------CKGHKNWVLCVAWSPDG 169 (480)
T ss_pred ccCCCCCcEEEEEecCCCc-eEEecCCCceEEeeccCCCCccee-------------------ecCCccEEEEEEECCCc
Confidence 344 889999999999998 689999999999999998776653 78999999999999999
Q ss_pred CEEEEEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEec-----CCCceEEEEEeCCCcEEEEEccCCceeEEecC
Q 001477 421 LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAH-----PNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG 495 (1071)
Q Consensus 421 ~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~-----d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 495 (1071)
+.||+|+.||+|++||.++|+++.. .+.+|...|++++|.| ..+ +|++++.||.|+|||+..++++..+.+
T Consensus 170 k~iASG~~dg~I~lwdpktg~~~g~--~l~gH~K~It~Lawep~hl~p~~r--~las~skDg~vrIWd~~~~~~~~~lsg 245 (480)
T KOG0271|consen 170 KKIASGSKDGSIRLWDPKTGQQIGR--ALRGHKKWITALAWEPLHLVPPCR--RLASSSKDGSVRIWDTKLGTCVRTLSG 245 (480)
T ss_pred chhhccccCCeEEEecCCCCCcccc--cccCcccceeEEeecccccCCCcc--ceecccCCCCEEEEEccCceEEEEecc
Confidence 9999999999999999999987654 6889999999999976 455 799999999999999999999999999
Q ss_pred CCCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCceeEEecCCCCcEEEEEEc-----------cCCC----------
Q 001477 496 HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYS-----------ADGT---------- 554 (1071)
Q Consensus 496 h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s-----------~~~~---------- 554 (1071)
|+.+|+|+.|-.. .++++|+.|++|++|+...+.....+.+|.++|+.++.+ |.++
T Consensus 246 HT~~VTCvrwGG~---gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~ 322 (480)
T KOG0271|consen 246 HTASVTCVRWGGE---GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQK 322 (480)
T ss_pred CccceEEEEEcCC---ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHH
Confidence 9999999999643 699999999999999999988899999999999999877 2233
Q ss_pred ---------------EEEEeccCCCCCCeEEEEeCCC-CceeEEeecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 001477 555 ---------------RLFSCGTSKEGESHLVEWNESE-GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMD 618 (1071)
Q Consensus 555 ---------------~l~~~~~~~d~~~~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 618 (1071)
.+++++. |.++.+|+... .+++....+|.. .|+.+.|+||++++++++.|..|++||.+
T Consensus 323 ~Al~rY~~~~~~~~erlVSgsD----d~tlflW~p~~~kkpi~rmtgHq~-lVn~V~fSPd~r~IASaSFDkSVkLW~g~ 397 (480)
T KOG0271|consen 323 KALERYEAVLKDSGERLVSGSD----DFTLFLWNPFKSKKPITRMTGHQA-LVNHVSFSPDGRYIASASFDKSVKLWDGR 397 (480)
T ss_pred HHHHHHHHhhccCcceeEEecC----CceEEEecccccccchhhhhchhh-heeeEEECCCccEEEEeecccceeeeeCC
Confidence 4888875 78899999764 458888899988 89999999999999999999999999999
Q ss_pred CCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCh
Q 001477 619 NMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1071)
Q Consensus 619 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~ 664 (1071)
+|+.+..+.+| ...|..++|+.|.++|++|+.|.++++|++++.
T Consensus 398 tGk~lasfRGH--v~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tk 441 (480)
T KOG0271|consen 398 TGKFLASFRGH--VAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTK 441 (480)
T ss_pred Ccchhhhhhhc--cceeEEEEeccCccEEEEcCCCceEEEEEeeee
Confidence 99999999866 458999999999999999999999999999876
No 12
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.4e-44 Score=382.55 Aligned_cols=511 Identities=15% Similarity=0.195 Sum_probs=408.0
Q ss_pred cccccCCChh---hHHhhcccCCcceeeccCCCCCCccccCCc-------cceeeEEeec-CCCCeEEEEeecCCCeEEE
Q 001477 295 GMDYQSADSD---HLMKRIRTGQSDEVSFAGVAHTPNVYSQDD-------LTKTVVRTLN-QGSNVMSMDFHPQQQTILL 363 (1071)
Q Consensus 295 ~~~~~~~~~~---~~~~~~~~~~~~~v~~s~~~~~~~~~~~d~-------~~~~~~~~~~-h~~~V~~~~fsp~g~~lla 363 (1071)
...|+-.-++ .+........+.++.-+++.-.+++.-.|+ .......++. |...|+++.|...|. .||
T Consensus 45 vn~WdlRtge~~~~l~~~~~k~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~-rla 123 (888)
T KOG0306|consen 45 VNIWDLRTGEIEKKLILLKKKAEVTCLRSSDDILLLAVGYADGSVQIFSLESEEILITFNGHKAAVTTLKFDKIGT-RLA 123 (888)
T ss_pred EeEEeeecchhhhhhhhhcccceEEEeeccCCcceEEEEecCceEEeeccCCCceeeeecccccceEEEEEcccCc-eEe
Confidence 5677766552 222212222556666777777677665554 3446666776 999999999999997 689
Q ss_pred EEcCCCeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeEEEECCCCCEEEEEeCCCeEEEEEecCCCcc
Q 001477 364 VGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGEL 443 (1071)
Q Consensus 364 ~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~la~~~~dg~i~iwd~~~~~~~ 443 (1071)
+||.|+.|.+||+-....+.+ +.||.+.|+..-|..+.+++++.+.|+.|++||+++..+.
T Consensus 124 SGskDt~IIvwDlV~E~Gl~r-------------------L~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf 184 (888)
T KOG0306|consen 124 SGSKDTDIIVWDLVGEEGLFR-------------------LRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCF 184 (888)
T ss_pred ecCCCccEEEEEeccceeeEE-------------------eecchHHHhHHhccCCCeEEEEeccCceEEEEecccceee
Confidence 999999999999976554443 7899999999999999999999999999999999998776
Q ss_pred ceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccC------------------------CceeEEec-----
Q 001477 444 RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA------------------------GRKQYTFE----- 494 (1071)
Q Consensus 444 ~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~------------------------~~~~~~~~----- 494 (1071)
. +.-.|.+.|+.+++.+ + .+++++.|+.+++|++.. ++.+....
T Consensus 185 ~---Thvd~r~Eiw~l~~~~--~--~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r 257 (888)
T KOG0306|consen 185 E---THVDHRGEIWALVLDE--K--LLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDR 257 (888)
T ss_pred e---EEecccceEEEEEEec--c--eEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCccc
Confidence 6 6678999999999987 4 789999999999999820 00000000
Q ss_pred ------------------------------------------------------------CCCCCeEEEEecccCCccEE
Q 001477 495 ------------------------------------------------------------GHEAPVYSVCPHHKESIQFI 514 (1071)
Q Consensus 495 ------------------------------------------------------------~h~~~v~~i~~~~~~~~~~l 514 (1071)
.-...+.++.|.|.+.....
T Consensus 258 ~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~ 337 (888)
T KOG0306|consen 258 FLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENT 337 (888)
T ss_pred EEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCccee
Confidence 01234556667666554422
Q ss_pred EEEecCCeEEEEEcCCCcee---------EEecCCCCcEEEEEEccCCCEEEEeccCCCCCCeEEEEeCCCCceeEEeec
Q 001477 515 FSTAIDGKIKAWLYDYLGSR---------VDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSG 585 (1071)
Q Consensus 515 ~s~~~d~~i~vwd~~~~~~~---------~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~ 585 (1071)
+..-.++++..|.++..... ..+.+|...|.++++|.+...+++++ .+.+.+|+..+.++++++..
T Consensus 338 lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga-----~~SikiWn~~t~kciRTi~~ 412 (888)
T KOG0306|consen 338 LVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGA-----GESIKIWNRDTLKCIRTITC 412 (888)
T ss_pred EEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecC-----CCcEEEEEccCcceeEEecc
Confidence 33367888888887763333 46778889999999999998888886 56699999999999999986
Q ss_pred ccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCChh
Q 001477 586 FRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGV 665 (1071)
Q Consensus 586 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~ 665 (1071)
. .+.+..|.|.++++++|...|.+.+||+.+...+.+++.|.+ .++.++.+||+..+++|+.|.+|++||..--
T Consensus 413 ~---y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdg--aIWsi~~~pD~~g~vT~saDktVkfWdf~l~- 486 (888)
T KOG0306|consen 413 G---YILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDG--AIWSISLSPDNKGFVTGSADKTVKFWDFKLV- 486 (888)
T ss_pred c---cEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhcccc--ceeeeeecCCCCceEEecCCcEEEEEeEEEE-
Confidence 5 678899999999999999999999999999999999987665 8999999999999999999999999997422
Q ss_pred hhhhhhcCCccccccCCCCCCCCCCccccccCCCCccccccCCCCCCCCCCCCcccccccCCCCcccccccccccccccC
Q 001477 666 RLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVD 745 (1071)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 745 (1071)
....+....
T Consensus 487 ---~~~~gt~~k-------------------------------------------------------------------- 495 (888)
T KOG0306|consen 487 ---VSVPGTQKK-------------------------------------------------------------------- 495 (888)
T ss_pred ---eccCcccce--------------------------------------------------------------------
Confidence 111110000
Q ss_pred ccceeccCCCCCcccceeeecCCCcCCCceEEEEEecccchhhhccccceeEEEecccccCCCCCccceeecceeccCCC
Q 001477 746 KIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPS 825 (1071)
Q Consensus 746 ~v~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~ 825 (1071)
+-.+ ...+.+. -.+.|.++.+||||++|+++--|++++||-+++-.+
T Consensus 496 ---~lsl------~~~rtLe-----l~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKF------------------- 542 (888)
T KOG0306|consen 496 ---VLSL------KHTRTLE-----LEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKF------------------- 542 (888)
T ss_pred ---eeee------ccceEEe-----ccccEEEEEEcCCCcEEEEEeccCeEEEEEecceee-------------------
Confidence 0000 0111222 346799999999999999999999999996654222
Q ss_pred CCccccccCCCCCCCCCeEEEEEecCCcEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCCEEEEEeCCC
Q 001477 826 GTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDS 904 (1071)
Q Consensus 826 ~~~~~~~~~~~~h~~~~v~~v~~s~d~~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg 904 (1071)
...+.| | .-+|.|+.+|||++.+++|+ |.+|++|-++=|.|.+.+-+|.+.|.++.|-| ...++.+++.|+
T Consensus 543 ----flsLYG--H-kLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P-~~~~FFt~gKD~ 614 (888)
T KOG0306|consen 543 ----FLSLYG--H-KLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLP-KTHLFFTCGKDG 614 (888)
T ss_pred ----eeeecc--c-ccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcc-cceeEEEecCcc
Confidence 111444 9 99999999999999999999 99999999999999999999999999999999 889999999999
Q ss_pred eEEEEEccCCeEEEEecCcCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 001477 905 SVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK 955 (1071)
Q Consensus 905 ~v~vwd~~~~~~~~~l~~h~~~v~~l~~s~d~~~l~s~~~d~~v~vWd~~~ 955 (1071)
.|+-||-..-++++.+.+|...|+|++.+|+|.+++|+|.|.+|++|....
T Consensus 615 kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 615 KVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred eEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence 999999999999999999999999999999999999999999999998765
No 13
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=3.3e-41 Score=362.20 Aligned_cols=554 Identities=15% Similarity=0.220 Sum_probs=363.3
Q ss_pred cchHHHHHHHHHHhhhccHHHHHHHHHHHcCCCcc--------HHHHH--------------------------HH--hh
Q 001477 3 SLSRELVFLILQFLDEEKFKETVHKLEQESGFFFN--------MKHFE--------------------------DQ--VQ 46 (1071)
Q Consensus 3 ~~~~e~~rli~q~L~~~g~~~s~~~L~~Esg~~~~--------~~~l~--------------------------~~--i~ 46 (1071)
+..+++++++++||+..||+++...|.+|.++... ...+| .+ +.
T Consensus 19 ~~~~~~n~~v~~yl~~~~y~~te~~l~~e~~l~s~~~~~~~a~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 98 (707)
T KOG0263|consen 19 SHTRDLNRIVLEYLRKKKYSRTEEMLRQEANLPSRPVNGMPAEPDYDREQFEALPPIGLPKENADDETPQGLSSSAVPVE 98 (707)
T ss_pred cchHHHHHHHHHHHhhhcccccchhhhhhhcccccccCCCccccchhhhhhhccCCccccccccCCcccccccccCchhh
Confidence 34679999999999999999999999999874331 11121 00 01
Q ss_pred cccHHHH------HHHhcCcCcc-------cccchhhHHHHHHHHHHHHHHhcccCHHHHHHHHHhhcccccccCHHHHH
Q 001477 47 AGEWDEV------ERYLCGFTKV-------EDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFK 113 (1071)
Q Consensus 47 ~g~w~~~------~~~l~~l~~~-------~~~~~~~~~~~~i~~~~~lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~ 113 (1071)
.-.|... ++.-..|+.+ -..++. .++|+|+-|.||+|+.++..+.|..|+.+.--.......+...
T Consensus 99 ~~~~~~~~~~~~ye~~y~~lk~~ve~Sldi~k~El~-~iLypifv~~yldl~~~~~~~~a~~Ffe~f~~d~~~~~~e~i~ 177 (707)
T KOG0263|consen 99 KALWSAEEIPDQYEHVYSELKTWVEDSLDIYKAELS-PILYPIFVHSYLDLVQKSAYETAKSFFERFRGDHKVYHSESIF 177 (707)
T ss_pred hccccccCCChhHhhhhhhcchhhhCcchhhhHHHH-HHHHHHHHHHHHHHHHcCcHHHHHHHHHHhccchhhhhhHHHH
Confidence 1112221 2222222222 122333 4999999999999999999999999999865555566777778
Q ss_pred HHHHhhcccCccchhhhccCCC----chhHHHHHHHHHHhhcccCccccccCCCCCCcchHHHHHHHHHHHHHHhhCCCC
Q 001477 114 EITQLLTLDNFRQNEQLSKYGD----TKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLNWQHQLCKNP 189 (1071)
Q Consensus 114 ~l~~ll~~~~~~~~~~~~~~~~----~~~~R~~l~~~l~~~~~~~~~~~~~~~~~~~p~~rL~~ll~qa~~~q~~~~~~~ 189 (1071)
+|..+-...++.+++....+.. ..=+|.. ++.|.+++.+... +-..-+..+|.|++-.++......
T Consensus 178 ~l~~~~~~~~i~~ne~~~~~~~~ky~i~~sr~s-~~lL~~~l~~~~~---------~~g~~i~~ii~~hldi~v~~~~~~ 247 (707)
T KOG0263|consen 178 QLLSLETIKHIKENETARAFRKNKYVIRLSRDS-FDLLLRFLQEDNN---------IGGTIIIKIINQHLDIDVFDGVMA 247 (707)
T ss_pred HHHhhhhHHHHhhhhhHHHHhhCcEEEEecHHH-HHHHHHHhhhhcc---------ccchHHHHHHHHHhCccccccccc
Confidence 8888777666666655444433 1222332 4455555555432 223567888888888887654332
Q ss_pred CCCCCccc-------cccccccCCCCCCCCCCCCCCCCcccCCCCCCCCC----CCCCCCCCCCCCCCCcccccccccCC
Q 001477 190 RPNPDIKT-------LFTDHSCNPTSNGARPPPPTNNPLVGPIPKAGQFP----PIGAHGPFQPVVSPSPGAIAGWMSSN 258 (1071)
Q Consensus 190 ~~~~~~~~-------l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~h~~f~~~~~~~~~~~~~~~~~~ 258 (1071)
+....... .+..+.- .+.+.-.-.++.+++...++ .+.+-.|- +. ++-
T Consensus 248 r~~~~~~~~~g~~~~~i~g~~~--------~e~~~~~~~l~~~~~e~~~~~~~~~~~e~~D~-----~~----~~~---- 306 (707)
T KOG0263|consen 248 RRTTKPTAMVGSEQESIAGEAK--------REINKQKVQLGLLLKEEEIEKKLPILLEVEDD-----PN----EPD---- 306 (707)
T ss_pred cccccchhhcccccccccccch--------hhcccceeeecccccchhhhhcccccccCccc-----cc----ccc----
Confidence 21000000 0001000 00110000111112211111 01111110 00 000
Q ss_pred CCCCCCCCccCCCCCCCCCCcccccccCCCCCCCCCcccccCCChh--hHHhhcccCCcceeeccCCCCCCccccCCccc
Q 001477 259 SPSLPHPSMAAGPPGFVQPSSAVGFLKHPRTPTGMTGMDYQSADSD--HLMKRIRTGQSDEVSFAGVAHTPNVYSQDDLT 336 (1071)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~v~~s~~~~~~~~~~~d~~~ 336 (1071)
....+..+..+.-...+ -..++.|. ...+.-+|-.+ ...... .-.+.+.-.....+.++
T Consensus 307 ----~~~~~~~~~~~~~~~~k----~~d~~~ps--~d~iPlPp~~~~d~~~~~~---------~l~d~~kr~~l~~~~lp 367 (707)
T KOG0263|consen 307 ----NEKLKKPKKKKLLSEEK----KRDPNAPS--RDRIPLPPLKQVDKLAELE---------ALKDEQKRVKLGRNSLP 367 (707)
T ss_pred ----ccccccchhhhhhhhhh----ccccCCCc--cccCCCCcccchhHHHHHH---------HHHHHHHHhhcCCCCCC
Confidence 00000000000000000 00001111 01111111110 000000 00011112223356678
Q ss_pred eeeEEeec-CCCCeEEEEeecCCCeEEEEEcCCCeEEEEecCCCccc--cc-cccee---------ecccccccchhhhh
Q 001477 337 KTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERL--AH-KPFKV---------WDISAASMPLQNAL 403 (1071)
Q Consensus 337 ~~~~~~~~-h~~~V~~~~fsp~g~~lla~gs~dg~i~iwd~~~~~~~--~~-~~~~~---------~d~~~~~~~~~~~~ 403 (1071)
..+.+++. ....++|..||+|+. +||.|..|..|++|.+...+.. .. ..+.- -++...........
T Consensus 368 Sic~YT~~nt~~~v~ca~fSddss-mlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~ 446 (707)
T KOG0263|consen 368 SICMYTFHNTYQGVTCAEFSDDSS-MLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRT 446 (707)
T ss_pred cEEEEEEEEcCCcceeEeecCCcc-hhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEE
Confidence 88888888 578999999999998 8999999999999999853211 10 00000 01111111122233
Q ss_pred cccCCCCeeEEEECCCCCEEEEEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEE
Q 001477 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1071)
Q Consensus 404 ~~~h~~~v~~~~~spd~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd 483 (1071)
+.||.++|..+.|+|+.++|+++|.|+++|+|.+.+..++. .+.||..||+++.|+|-|- ++||+|.|++.++|.
T Consensus 447 L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V---~y~GH~~PVwdV~F~P~Gy--YFatas~D~tArLWs 521 (707)
T KOG0263|consen 447 LYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLV---IYKGHLAPVWDVQFAPRGY--YFATASHDQTARLWS 521 (707)
T ss_pred eecCCCceeeeeecccccceeeccCCcceeeeecccceeEE---EecCCCcceeeEEecCCce--EEEecCCCceeeeee
Confidence 78999999999999999999999999999999999987665 7789999999999999998 899999999999999
Q ss_pred ccCCceeEEecCCCCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCceeEEecCCCCcEEEEEEccCCCEEEEeccCC
Q 001477 484 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK 563 (1071)
Q Consensus 484 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~ 563 (1071)
.....+++.+.+|.+.|.|+.|+|+. +++++||.|.++|+||+.++..+..+.+|.++|.+++|||+|++|++++.
T Consensus 522 ~d~~~PlRifaghlsDV~cv~FHPNs--~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~e-- 597 (707)
T KOG0263|consen 522 TDHNKPLRIFAGHLSDVDCVSFHPNS--NYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDE-- 597 (707)
T ss_pred cccCCchhhhcccccccceEEECCcc--cccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeeccc--
Confidence 99999999999999999999999976 89999999999999999999999999999999999999999999999975
Q ss_pred CCCCeEEEEeCCCCceeEEeecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCC
Q 001477 564 EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM 620 (1071)
Q Consensus 564 d~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 620 (1071)
++.|.+||+.+++++..+.+|.+ .|.++.|+.+|..|++||.|.+|++||+..-
T Consensus 598 --d~~I~iWDl~~~~~v~~l~~Ht~-ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 598 --DGLIKIWDLANGSLVKQLKGHTG-TIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred --CCcEEEEEcCCCcchhhhhcccC-ceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 88899999999999999999965 9999999999999999999999999998753
No 14
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=5.6e-40 Score=344.30 Aligned_cols=587 Identities=13% Similarity=0.166 Sum_probs=398.3
Q ss_pred EEEeecCCCeEEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeEEEECCCCCEEEEEe--C
Q 001477 351 SMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF--S 428 (1071)
Q Consensus 351 ~~~fsp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~la~~~--~ 428 (1071)
.++-+|-.. ++|.- ....|.+||+....+- +++..|..+++|++||++|+|+|+|- .
T Consensus 42 gLa~~p~Sg-l~aYp-AGCvVVlfn~~~~tQ~-------------------hlvnssRk~~t~vAfS~~GryvatGEcG~ 100 (1080)
T KOG1408|consen 42 GLASVPCSG-LCAYP-AGCVVVLFNVDSCTQS-------------------HLVNSSRKPLTCVAFSQNGRYVATGECGR 100 (1080)
T ss_pred ccccccccc-ceeec-cCcEEEEEcccccchh-------------------heecccCcceeEEEEcCCCcEEEecccCC
Confidence 344455443 33321 2347888998765433 23567888999999999999999984 6
Q ss_pred CCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeC--CCcEEEEEccCCceeEEecCCCCCeEEEEec
Q 001477 429 KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD--DKMIKVWDVVAGRKQYTFEGHEAPVYSVCPH 506 (1071)
Q Consensus 429 dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~ 506 (1071)
...+++|++.....+. ++..|...|+|++|+|.++ ++++.+. |-.|.+||++..-....- .-...|..++|+
T Consensus 101 ~pa~kVw~la~h~vVA---EfvdHKY~vtcvaFsp~~k--yvvSVGsQHDMIVnv~dWr~N~~~asn-kiss~Vsav~fs 174 (1080)
T KOG1408|consen 101 TPASKVWSLAFHGVVA---EFVDHKYNVTCVAFSPGNK--YVVSVGSQHDMIVNVNDWRVNSSGASN-KISSVVSAVAFS 174 (1080)
T ss_pred Cccceeeeeccccchh---hhhhccccceeeeecCCCc--EEEeeccccceEEEhhhhhhccccccc-ccceeEEEEEEc
Confidence 7789999999877666 7889999999999999999 7776654 446778988754433221 245678888988
Q ss_pred ccCCccEEEEEecCCeEEEEEcCCCceeE---EecCCCCcEEEEEEc------------cCCCEEEEeccCCCCCCeEEE
Q 001477 507 HKESIQFIFSTAIDGKIKAWLYDYLGSRV---DYDAPGNWCTMMAYS------------ADGTRLFSCGTSKEGESHLVE 571 (1071)
Q Consensus 507 ~~~~~~~l~s~~~d~~i~vwd~~~~~~~~---~~~~~~~~i~~~~~s------------~~~~~l~~~~~~~d~~~~i~i 571 (1071)
. +|.|+++.+ +..|++|.++...... .+.+...-...+.++ .+..+.++. .|.+.-
T Consensus 175 E--dgSYfvT~g-nrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~------qGhLvE 245 (1080)
T KOG1408|consen 175 E--DGSYFVTSG-NRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITA------QGHLVE 245 (1080)
T ss_pred c--CCceeeeee-eeeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEec------ccceee
Confidence 5 557888765 6789999988665321 111111111111110 011111111 122222
Q ss_pred EeCCCCceeEEeecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEec----------------------C
Q 001477 572 WNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA----------------------D 629 (1071)
Q Consensus 572 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----------------------~ 629 (1071)
| .+.+++...........+|++.+ .++|++|+.+|.|++|+..+-.-+.+++. .
T Consensus 246 F--SsRRLLDKWVqcRTTnAnCIcVs--~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~ 321 (1080)
T KOG1408|consen 246 F--SSRRLLDKWVQCRTTNANCICVS--SRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSP 321 (1080)
T ss_pred e--chhhhhhhhhhhhccccceeeee--cceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCc
Confidence 2 12222222211112134566665 47899999999999999887654443321 1
Q ss_pred CCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCChhhhhh--hhcCCccccccCCCCCCCCCCccccccCCCCccccccC
Q 001477 630 GGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLR--MLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIA 707 (1071)
Q Consensus 630 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 (1071)
.......++.|++....|.+...|..+++||+++-.+.-+ .+-.|+.-+..+
T Consensus 322 a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~V-------------------------- 375 (1080)
T KOG1408|consen 322 AIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDV-------------------------- 375 (1080)
T ss_pred ccCCceeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeee--------------------------
Confidence 1122345788999999999999999999999987632211 111222211111
Q ss_pred CCCCCCCCCCCcccccccCCCCcccccccccccccccCccceeccCCCCCcccceeee-------cC-------------
Q 001477 708 PTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALR-------LP------------- 767 (1071)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~-------~~------------- 767 (1071)
+.- | .-+........+.+.++++++|++|++|++.........++-. .+
T Consensus 376 ---e~~----p----~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~ 444 (1080)
T KOG1408|consen 376 ---ENL----P----CNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDAS 444 (1080)
T ss_pred ---ccc----c----ccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhcc
Confidence 000 0 0111233445677778899999999999998743322211100 00
Q ss_pred --C--------CcCCCceEEEEEecccchhhhccccceeEEEecccccCCCCCccceeecceeccCCCCCccccccCCCC
Q 001477 768 --D--------SIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESK 837 (1071)
Q Consensus 768 --~--------~~~~~~v~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 837 (1071)
. -.....+++++.||+|++|++|...|.++||++..-.. +. .+. .
T Consensus 445 ~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~----------------------~~-~~e--A 499 (1080)
T KOG1408|consen 445 AGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEY----------------------TC-FME--A 499 (1080)
T ss_pred CCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhh----------------------hh-hee--c
Confidence 0 11235689999999999999999999999998753211 00 122 2
Q ss_pred CCCCCeEEEEEec---CCcEEEEEe-CCeEEEEECCC-CeEEEEEeCCCCCeEEEEEcCCCC-CEEEEEeCCCeEEEEEc
Q 001477 838 PTEESAACIALSK---NDSYVMSAS-GGKVSLFNMMT-FKVMTMFMSPPPAATFLAFHPQDN-NIIAIGMEDSSVQIYNV 911 (1071)
Q Consensus 838 h~~~~v~~v~~s~---d~~~la~~~-dg~i~vwd~~~-~~~~~~~~~~~~~i~~l~~sp~~~-~~la~g~~dg~v~vwd~ 911 (1071)
| +.+|.|+.||. ..++||+++ |.-|.|||+.. ..++.++.+|...|+++.|.-.++ ..+++++.|+.|.+--.
T Consensus 500 H-esEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~ 578 (1080)
T KOG1408|consen 500 H-ESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVN 578 (1080)
T ss_pred c-cceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehh
Confidence 8 99999999985 457999999 88999999874 567788999999999999987332 56788889988765543
Q ss_pred cCCeEEEEecCc-----CCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeecCCCCCCCCCCCceEEEEccCC
Q 001477 912 RVDEVKTKLKGH-----QNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQ 986 (1071)
Q Consensus 912 ~~~~~~~~l~~h-----~~~v~~l~~s~d~~~l~s~~~d~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg 986 (1071)
+...-...+..| ...+..++..|..+++++++.|+.|+||++++++..+.+ ....++. +..-.+...|.|
T Consensus 579 qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~F--Kgs~~~e---G~lIKv~lDPSg 653 (1080)
T KOG1408|consen 579 QKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSF--KGSRDHE---GDLIKVILDPSG 653 (1080)
T ss_pred ccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeee--cccccCC---CceEEEEECCCc
Confidence 321111112111 245889999999999999999999999999999977543 2233332 567889999999
Q ss_pred CEEEE-EECCeEEEEeC-CCCceeecCCCCCCCCCeeEEEEecCCcEEEEEeCCCeEEEEEcCC
Q 001477 987 THLLV-VHESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAET 1048 (1071)
Q Consensus 987 ~~l~~-~~d~~i~vwd~-~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~t~~~Dg~i~vwd~~~ 1048 (1071)
-|+|+ .+|.++.++|. .++++++. .+|+..|+.|.|++|.+.|++.+.||+|+||.+..
T Consensus 654 iY~atScsdktl~~~Df~sgEcvA~m---~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 654 IYLATSCSDKTLCFVDFVSGECVAQM---TGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred cEEEEeecCCceEEEEeccchhhhhh---cCcchheeeeeecccchhheeecCCceEEEEECch
Confidence 99999 48999999999 99999887 45699999999999999999999999999999875
No 15
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=6.8e-42 Score=339.30 Aligned_cols=282 Identities=18% Similarity=0.276 Sum_probs=265.0
Q ss_pred CCCCeEEEEeecCCCeEEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeEEEECCC--CCE
Q 001477 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD--GLM 422 (1071)
Q Consensus 345 h~~~V~~~~fsp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd--~~~ 422 (1071)
...+|..+.||+|++ +||+||.+|.++||+..+...+.. +.+|.+.|.++.|+|. +..
T Consensus 174 d~rPis~~~fS~ds~-~laT~swsG~~kvW~~~~~~~~~~-------------------l~gH~~~v~~~~fhP~~~~~~ 233 (459)
T KOG0272|consen 174 DTRPISGCSFSRDSK-HLATGSWSGLVKVWSVPQCNLLQT-------------------LRGHTSRVGAAVFHPVDSDLN 233 (459)
T ss_pred CCCcceeeEeecCCC-eEEEeecCCceeEeecCCcceeEE-------------------EeccccceeeEEEccCCCccc
Confidence 456999999999998 899999999999999998866553 8899999999999996 679
Q ss_pred EEEEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccCCceeEEecCCCCCeEE
Q 001477 423 LGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYS 502 (1071)
Q Consensus 423 la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~ 502 (1071)
+|+|+.||++++|++.+...+. .+.+|...|..++|+|+|+ +|+|++.|.+-++||+.++..+...+||...|.+
T Consensus 234 lat~s~Dgtvklw~~~~e~~l~---~l~gH~~RVs~VafHPsG~--~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~ 308 (459)
T KOG0272|consen 234 LATASADGTVKLWKLSQETPLQ---DLEGHLARVSRVAFHPSGK--FLGTASFDSTWRLWDLETKSELLLQEGHSKGVFS 308 (459)
T ss_pred eeeeccCCceeeeccCCCcchh---hhhcchhhheeeeecCCCc--eeeecccccchhhcccccchhhHhhcccccccce
Confidence 9999999999999999877666 7889999999999999999 8999999999999999999999999999999999
Q ss_pred EEecccCCccEEEEEecCCeEEEEEcCCCceeEEecCCCCcEEEEEEccCCCEEEEeccCCCCCCeEEEEeCCCCceeEE
Q 001477 503 VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRT 582 (1071)
Q Consensus 503 i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~ 582 (1071)
++|++++ .++++|+.|..-+|||++++.++..+.+|..+|.+++|+|+|-.+++|+. |++++|||++....+.+
T Consensus 309 iaf~~DG--SL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~----Dnt~kVWDLR~r~~ly~ 382 (459)
T KOG0272|consen 309 IAFQPDG--SLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSS----DNTCKVWDLRMRSELYT 382 (459)
T ss_pred eEecCCC--ceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCC----CCcEEEeeeccccccee
Confidence 9999855 89999999999999999999999999999999999999999999999985 88999999999999999
Q ss_pred eecccccceeEEEEeC-CCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEE
Q 001477 583 YSGFRKRSLGVVQFDT-TRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILA 660 (1071)
Q Consensus 583 ~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~ 660 (1071)
+.+|.+ -|..+.|+| .|.+|++++.|+++++|...+..+++.+.+|.. .|.++.+++|+..+++++.|+++++|.
T Consensus 383 ipAH~n-lVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~--kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 383 IPAHSN-LVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEG--KVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred cccccc-hhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCcc--ceEEEEeccCCceEEEeccCceeeecc
Confidence 999988 899999998 678899999999999999999999999998765 799999999999999999999999995
No 16
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=2.2e-40 Score=332.86 Aligned_cols=308 Identities=16% Similarity=0.262 Sum_probs=259.2
Q ss_pred ceeeEEeecCCCCeEEEEeecCCCeEEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeEEE
Q 001477 336 TKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCV 415 (1071)
Q Consensus 336 ~~~~~~~~~h~~~V~~~~fsp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~ 415 (1071)
+....+.+.|..+|.+.+|+|-...++++|+.|-..++|++.......... -++..+...-. .-......|++++
T Consensus 168 ~~~~~kvl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q---~~lrh~~~~~~--~s~~~nkdVT~L~ 242 (524)
T KOG0273|consen 168 PSSKAKVLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQ---LVLRHCIREGG--KSVPSNKDVTSLD 242 (524)
T ss_pred cccceeeccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchh---hhhhhhhhhhc--ccCCccCCcceEE
Confidence 334456666899999999999887689999999999999987411111000 00000000000 0011345799999
Q ss_pred ECCCCCEEEEEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccCCceeEEecC
Q 001477 416 WGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG 495 (1071)
Q Consensus 416 ~spd~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 495 (1071)
|+.+|..||+|+.||.++||+..++. +. ++..|.++|.++.|+.+|. +|++++.|+++.+||..+|...+.+.-
T Consensus 243 Wn~~G~~LatG~~~G~~riw~~~G~l-~~---tl~~HkgPI~slKWnk~G~--yilS~~vD~ttilwd~~~g~~~q~f~~ 316 (524)
T KOG0273|consen 243 WNNDGTLLATGSEDGEARIWNKDGNL-IS---TLGQHKGPIFSLKWNKKGT--YILSGGVDGTTILWDAHTGTVKQQFEF 316 (524)
T ss_pred ecCCCCeEEEeecCcEEEEEecCchh-hh---hhhccCCceEEEEEcCCCC--EEEeccCCccEEEEeccCceEEEeeee
Confidence 99999999999999999999987643 33 6778999999999999999 899999999999999999999999988
Q ss_pred CCCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCceeEEecCCCCcEEEEEEccCCCEEEEeccCCCCCCeEEEEeCC
Q 001477 496 HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES 575 (1071)
Q Consensus 496 h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~ 575 (1071)
|..+-..+.|-.+ ..+++.+.|+.|+|+.+....+...+.+|.+.|.++.|+|.|..|++++. |+++++|+..
T Consensus 317 ~s~~~lDVdW~~~---~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~Sd----D~TlkiWs~~ 389 (524)
T KOG0273|consen 317 HSAPALDVDWQSN---DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSD----DGTLKIWSMG 389 (524)
T ss_pred ccCCccceEEecC---ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecC----CCeeEeeecC
Confidence 9888777787643 68999999999999999999999999999999999999999999999986 8899999999
Q ss_pred CCceeEEeecccccceeEEEEeCCC---------CEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCE
Q 001477 576 EGAIKRTYSGFRKRSLGVVQFDTTR---------NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSL 646 (1071)
Q Consensus 576 ~~~~~~~~~~~~~~~v~~~~~~~~~---------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 646 (1071)
.+.....+..|.. .|..+.|+|+| ..+++++.|++|++||+..+.++..+..|. .+|.+++|+|+|++
T Consensus 390 ~~~~~~~l~~Hsk-ei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~--~pVysvafS~~g~y 466 (524)
T KOG0273|consen 390 QSNSVHDLQAHSK-EIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQ--EPVYSVAFSPNGRY 466 (524)
T ss_pred CCcchhhhhhhcc-ceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCC--CceEEEEecCCCcE
Confidence 9999999999988 89999999976 368899999999999999999999987554 48999999999999
Q ss_pred EEEEeCCCcEEEEEcCCh
Q 001477 647 LAVTTSDNGIKILANSDG 664 (1071)
Q Consensus 647 l~~~~~dg~v~iw~~~~~ 664 (1071)
+|+|+.||.|.+|+.+++
T Consensus 467 lAsGs~dg~V~iws~~~~ 484 (524)
T KOG0273|consen 467 LASGSLDGCVHIWSTKTG 484 (524)
T ss_pred EEecCCCCeeEeccccch
Confidence 999999999999999887
No 17
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=6e-39 Score=337.38 Aligned_cols=594 Identities=15% Similarity=0.206 Sum_probs=395.4
Q ss_pred CCccccCCccceeeEEeec-CCCCeEEEEeecCCC--eEEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhh
Q 001477 326 TPNVYSQDDLTKTVVRTLN-QGSNVMSMDFHPQQQ--TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNA 402 (1071)
Q Consensus 326 ~~~~~~~d~~~~~~~~~~~-h~~~V~~~~fsp~g~--~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~ 402 (1071)
..++..+|........+++ |.++|+|+.|-|+.+ -.+++|+.||.|.+|.++........
T Consensus 33 ~~~Iav~dp~k~~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~----------------- 95 (764)
T KOG1063|consen 33 GPAIAVADPEKILIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIY----------------- 95 (764)
T ss_pred CceEEEeCcccceeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEE-----------------
Confidence 3444444544445666677 999999999999885 14789999999999999843322211
Q ss_pred hcccCCCCeeEEEECCCCCEEEEEeCCCeEEEEEecCCCccceeeEeec--ccCCEEEEEEecCCCceEEEEEeCCCcEE
Q 001477 403 LLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDA--HVGGVNDIAFAHPNKQLCIVTCGDDKMIK 480 (1071)
Q Consensus 403 ~~~~h~~~v~~~~~spd~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~--h~~~v~~~~~s~d~~~~~l~s~~~d~~i~ 480 (1071)
.+.+|... ++++........+...|+.+.+||.+..+. .....+.- ...--.|+++.++.+..+++.|+.+..|.
T Consensus 96 ~~~g~~~~--~~cv~a~~~~~~~~~ad~~v~vw~~~~~e~-~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~ 172 (764)
T KOG1063|consen 96 TIQGHCKE--CVCVVARSSVMTCKAADGTVSVWDKQQDEV-FLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVD 172 (764)
T ss_pred eecCccee--EEEEEeeeeEEEeeccCceEEEeecCCCce-eeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEE
Confidence 13455544 445544333444447899999999955441 11112211 12223577777866655778888888888
Q ss_pred EEEccCC--ceeEEecCCCCCeEEEEecccCC-ccEEEEEecCCeEEEEEcCCCc--------------------eeE--
Q 001477 481 VWDVVAG--RKQYTFEGHEAPVYSVCPHHKES-IQFIFSTAIDGKIKAWLYDYLG--------------------SRV-- 535 (1071)
Q Consensus 481 iwd~~~~--~~~~~~~~h~~~v~~i~~~~~~~-~~~l~s~~~d~~i~vwd~~~~~--------------------~~~-- 535 (1071)
++.-.++ +.+..+.||.+.|.+++|...+. .-+|+++|.|..||+|.+.... ...
T Consensus 173 ~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~ 252 (764)
T KOG1063|consen 173 LYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEE 252 (764)
T ss_pred EeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeee
Confidence 8875533 45678899999999999986554 4688999999999999765332 000
Q ss_pred ---------EecCCCCcEEEEEEccCCCEEEEeccCCCCCCeEEEEeCCCC--ceeEEee----cccccceeEEEEeCCC
Q 001477 536 ---------DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG--AIKRTYS----GFRKRSLGVVQFDTTR 600 (1071)
Q Consensus 536 ---------~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~--~~~~~~~----~~~~~~v~~~~~~~~~ 600 (1071)
.+.+|..+|+++.|+|.+..|++++. |.++.+|...+. --+.... ++.........|+|++
T Consensus 253 i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASa----DksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~ 328 (764)
T KOG1063|consen 253 IQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASA----DKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNS 328 (764)
T ss_pred EEEEEehhhhhcCcccceEEEEEccchhhheeccc----CcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCC
Confidence 13478999999999999989998886 777999987654 2222211 1222357788899999
Q ss_pred CEEEEEeCCCcEEEEeCCC-CceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCChhhhhhhhcCCccccc
Q 001477 601 NRFLAAGDEFQIKFWDMDN-MNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKN 679 (1071)
Q Consensus 601 ~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~ 679 (1071)
+.+++-+..|..++|.... .......-..+|...|.+++|+|.|.+|++.+.|.+-|+|-.-..+.....+...+
T Consensus 329 ~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQ---- 404 (764)
T KOG1063|consen 329 NVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQ---- 404 (764)
T ss_pred CEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccc----
Confidence 9999999999999998332 22233333346677899999999999999999999999986541111111110000
Q ss_pred cCCCCCCCCCCccccccCCCCccccccCCCCCCCCCCCCcccccccCCCCcccccccccccccccCccceeccCCCCCcc
Q 001477 680 RCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPS 759 (1071)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~ 759 (1071)
T Consensus 405 -------------------------------------------------------------------------------- 404 (764)
T KOG1063|consen 405 -------------------------------------------------------------------------------- 404 (764)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceeeecCCCcCCCceEEEEEecccchhhhccccceeEEEecccc----------------cCCCC--------------
Q 001477 760 QIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRT----------------ERNPS-------------- 809 (1071)
Q Consensus 760 ~~~~~~~~~~~~~~~v~~l~~s~~g~~l~~~~~dg~v~vw~~~~~----------------~~~~~-------------- 809 (1071)
.|...++|++|-+....+++|+....+|+|+.+.. ...++
T Consensus 405 ----------iHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~ 474 (764)
T KOG1063|consen 405 ----------IHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAF 474 (764)
T ss_pred ----------cccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCC
Confidence 03333333333332222333333333333333221 00000
Q ss_pred -------Ccc------c--eeecceeccCCCCC-c-------cccccCCCCCCCCCeEEEEEecCCcEEEEEe-C-----
Q 001477 810 -------GKA------T--ANVAPQLWQPPSGT-L-------MTNDINESKPTEESAACIALSKNDSYVMSAS-G----- 860 (1071)
Q Consensus 810 -------g~~------~--~~~~~~~~~~~~~~-~-------~~~~~~~~~h~~~~v~~v~~s~d~~~la~~~-d----- 860 (1071)
|.. . +.....+..+.... + -...+- +| ...|++++.+|+|+++|++. .
T Consensus 475 ~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLY--GH-GyEv~~l~~s~~gnliASaCKS~~~eh 551 (764)
T KOG1063|consen 475 FPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLY--GH-GYEVYALAISPTGNLIASACKSSLKEH 551 (764)
T ss_pred cccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhc--cC-ceeEEEEEecCCCCEEeehhhhCCccc
Confidence 000 0 00000000111000 0 001123 38 99999999999999999996 2
Q ss_pred CeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEccCCe----EEEEecCcCCCeeEEEEcCCC
Q 001477 861 GKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE----VKTKLKGHQNRITGLAFSPTL 936 (1071)
Q Consensus 861 g~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~----~~~~l~~h~~~v~~l~~s~d~ 936 (1071)
..|++|+..+......+.+|.-.|+.++||| |+++|++++.|+++.+|...... .....+.|+.-|++..|+||+
T Consensus 552 AvI~lw~t~~W~~~~~L~~HsLTVT~l~FSp-dg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde 630 (764)
T KOG1063|consen 552 AVIRLWNTANWLQVQELEGHSLTVTRLAFSP-DGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDE 630 (764)
T ss_pred eEEEEEeccchhhhheecccceEEEEEEECC-CCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCccc
Confidence 3599999999999999999999999999999 99999999999999999986542 234477899999999999999
Q ss_pred CEEEEEeCCCcEEEEECCCC--ceeeeeeecCCCCCCCCCCCceEEEEccC----C-CEEEEE-ECCeEEEEeCC-CC--
Q 001477 937 NALVSSGADAQLCMWSIDKW--EKLKSRFIQAPAGRQSPLVGETKVQFHND----Q-THLLVV-HESQISVYDSK-LE-- 1005 (1071)
Q Consensus 937 ~~l~s~~~d~~v~vWd~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~s~d----g-~~l~~~-~d~~i~vwd~~-~~-- 1005 (1071)
.++||+|+|++|++|..... +.+... ........|+.+++.|- . ..+++| ..|.|.+|... ..
T Consensus 631 ~~FaTaSRDK~VkVW~~~~~~d~~i~~~------a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~ 704 (764)
T KOG1063|consen 631 KYFATASRDKKVKVWEEPDLRDKYISRF------ACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQ 704 (764)
T ss_pred ceeEEecCCceEEEEeccCchhhhhhhh------chhccCCceeeEEeeccccccccceEEEEecccEEEEEeccccccc
Confidence 99999999999999999886 322221 11111267899998763 2 255666 57899999962 11
Q ss_pred -------ceeecCCCCCCCCCeeEEEEecCC----------cEEEEEeCCCeEEEEEcC
Q 001477 1006 -------CSRSWSPKDALPAPISSAIYSCDG----------LLVYAGFCDGAIGVFDAE 1047 (1071)
Q Consensus 1006 -------~~~~~~~~~~h~~~v~~~~~s~dg----------~~l~t~~~Dg~i~vwd~~ 1047 (1071)
.........+|...|..++|+|-. ..|++|+.|.+++++++.
T Consensus 705 ~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 705 VTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIFNVD 763 (764)
T ss_pred ccceeeeeccccccccChHHhhheeEeccccccccccccceeEEeeecccceeEEeecc
Confidence 111122334678899999999752 256899999999999875
No 18
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=3.1e-39 Score=305.09 Aligned_cols=292 Identities=17% Similarity=0.278 Sum_probs=263.8
Q ss_pred eEEeec-CCCCeEEEEeecCCCeEEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeEEEEC
Q 001477 339 VVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 417 (1071)
Q Consensus 339 ~~~~~~-h~~~V~~~~fsp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~s 417 (1071)
..++|+ |.+.|.++.|++|++ .++++|.||.+.|||.-+..+.+- +.-....|..++|+
T Consensus 47 ~rr~LkGH~~Ki~~~~ws~Dsr-~ivSaSqDGklIvWDs~TtnK~ha-------------------ipl~s~WVMtCA~s 106 (343)
T KOG0286|consen 47 TRRTLKGHLNKIYAMDWSTDSR-RIVSASQDGKLIVWDSFTTNKVHA-------------------IPLPSSWVMTCAYS 106 (343)
T ss_pred eEEEecccccceeeeEecCCcC-eEEeeccCCeEEEEEcccccceeE-------------------EecCceeEEEEEEC
Confidence 347777 999999999999998 688999999999999988766543 33467789999999
Q ss_pred CCCCEEEEEeCCCeEEEEEecCCC---ccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccCCceeEEec
Q 001477 418 PDGLMLGVAFSKHIVHLYTYNPTG---ELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE 494 (1071)
Q Consensus 418 pd~~~la~~~~dg~i~iwd~~~~~---~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 494 (1071)
|.|+++|+|+.|+...||++.+.. ..+...++.+|.+.+.|+.|.+|+. |+|++.|.+..+||+++|+.+..|.
T Consensus 107 PSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~---ilT~SGD~TCalWDie~g~~~~~f~ 183 (343)
T KOG0286|consen 107 PSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNH---ILTGSGDMTCALWDIETGQQTQVFH 183 (343)
T ss_pred CCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCc---eEecCCCceEEEEEcccceEEEEec
Confidence 999999999999999999998651 2344457889999999999998775 8999999999999999999999999
Q ss_pred CCCCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCceeEEecCCCCcEEEEEEccCCCEEEEeccCCCCCCeEEEEeC
Q 001477 495 GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNE 574 (1071)
Q Consensus 495 ~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~ 574 (1071)
+|.+.|.++.+.|. +++.+++|+.|+..++||++.+.....+.+|...|++++|.|+|.-+++|+. |++.++||+
T Consensus 184 GH~gDV~slsl~p~-~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSD----D~tcRlyDl 258 (343)
T KOG0286|consen 184 GHTGDVMSLSLSPS-DGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSD----DATCRLYDL 258 (343)
T ss_pred CCcccEEEEecCCC-CCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCC----CceeEEEee
Confidence 99999999999995 6699999999999999999999999999999999999999999999999985 888999999
Q ss_pred CCCceeEEeeccc-ccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCC
Q 001477 575 SEGAIKRTYSGFR-KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSD 653 (1071)
Q Consensus 575 ~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 653 (1071)
+..+.+..|.... ...|++++|+..|++|++|..|.++.+||.-.++.+..+.+|.+ .|.++..+|||..+++|+.|
T Consensus 259 RaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeN--RvScl~~s~DG~av~TgSWD 336 (343)
T KOG0286|consen 259 RADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHEN--RVSCLGVSPDGMAVATGSWD 336 (343)
T ss_pred cCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCC--eeEEEEECCCCcEEEecchh
Confidence 9998888887542 22689999999999999999999999999999999999997765 89999999999999999999
Q ss_pred CcEEEEE
Q 001477 654 NGIKILA 660 (1071)
Q Consensus 654 g~v~iw~ 660 (1071)
.+++||.
T Consensus 337 s~lriW~ 343 (343)
T KOG0286|consen 337 STLRIWA 343 (343)
T ss_pred HheeecC
Confidence 9999994
No 19
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=6e-41 Score=332.60 Aligned_cols=255 Identities=20% Similarity=0.317 Sum_probs=235.0
Q ss_pred cCCCCeeEEEECCCCCEEEEEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEcc
Q 001477 406 DAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV 485 (1071)
Q Consensus 406 ~h~~~v~~~~~spd~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~ 485 (1071)
+.+.+|..+.||+|++.||||+.+|.+++|+..+...+. ++.+|...|.++.|+|......++||+.||++++|++.
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~---~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~ 249 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQ---TLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLS 249 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeE---EEeccccceeeEEEccCCCccceeeeccCCceeeeccC
Confidence 467789999999999999999999999999999876554 89999999999999998422379999999999999999
Q ss_pred CCceeEEecCCCCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCceeEEecCCCCcEEEEEEccCCCEEEEeccCCCC
Q 001477 486 AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEG 565 (1071)
Q Consensus 486 ~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~ 565 (1071)
+..++..+.+|...|..++|+|++ ++|++++.|.+-++||+++........+|...|.+++|.|||..+++|+.
T Consensus 250 ~e~~l~~l~gH~~RVs~VafHPsG--~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGl---- 323 (459)
T KOG0272|consen 250 QETPLQDLEGHLARVSRVAFHPSG--KFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGL---- 323 (459)
T ss_pred CCcchhhhhcchhhheeeeecCCC--ceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCc----
Confidence 999999999999999999999966 99999999999999999999999999999999999999999999999986
Q ss_pred CCeEEEEeCCCCceeEEeecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcC-CC
Q 001477 566 ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK-EG 644 (1071)
Q Consensus 566 ~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~ 644 (1071)
|..-+|||+++|+.+..+.+|.+ .|.+++|+|+|..+++||.|++++|||++....+.++..|.. -|+.+.|+| .|
T Consensus 324 D~~~RvWDlRtgr~im~L~gH~k-~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~n--lVS~Vk~~p~~g 400 (459)
T KOG0272|consen 324 DSLGRVWDLRTGRCIMFLAGHIK-EILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSN--LVSQVKYSPQEG 400 (459)
T ss_pred cchhheeecccCcEEEEeccccc-ceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccc--hhhheEecccCC
Confidence 77789999999999999999988 899999999999999999999999999999999999887765 799999999 88
Q ss_pred CEEEEEeCCCcEEEEEcCChhhhhhhhcC
Q 001477 645 SLLAVTTSDNGIKILANSDGVRLLRMLEG 673 (1071)
Q Consensus 645 ~~l~~~~~dg~v~iw~~~~~~~~~~~~~~ 673 (1071)
.+|++++.|+++++|...+. .+++.+.|
T Consensus 401 ~fL~TasyD~t~kiWs~~~~-~~~ksLaG 428 (459)
T KOG0272|consen 401 YFLVTASYDNTVKIWSTRTW-SPLKSLAG 428 (459)
T ss_pred eEEEEcccCcceeeecCCCc-ccchhhcC
Confidence 99999999999999998777 55555554
No 20
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.6e-38 Score=327.91 Aligned_cols=476 Identities=15% Similarity=0.259 Sum_probs=356.7
Q ss_pred CCCCeEEEEeecCCCeEEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeEEEECCCCCEEE
Q 001477 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1071)
Q Consensus 345 h~~~V~~~~fsp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~la 424 (1071)
++..|.++.|+|..+.+ .++-.+|.|.|||.++...+.. +.-..-+|.+..|-+--++++
T Consensus 12 rSdRVKsVd~HPtePw~-la~LynG~V~IWnyetqtmVks-------------------feV~~~PvRa~kfiaRknWiv 71 (794)
T KOG0276|consen 12 RSDRVKSVDFHPTEPWI-LAALYNGDVQIWNYETQTMVKS-------------------FEVSEVPVRAAKFIARKNWIV 71 (794)
T ss_pred cCCceeeeecCCCCceE-EEeeecCeeEEEecccceeeee-------------------eeecccchhhheeeeccceEE
Confidence 67899999999999954 5567899999999999877654 233566899999999999999
Q ss_pred EEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccCC-ceeEEecCCCCCeEEE
Q 001477 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG-RKQYTFEGHEAPVYSV 503 (1071)
Q Consensus 425 ~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~h~~~v~~i 503 (1071)
+|+.|..|+||+.++++.+. .+++|..-|++++.+|... +++|+|+|-+|++||.+.+ .+.++|.||...|.++
T Consensus 72 ~GsDD~~IrVfnynt~ekV~---~FeAH~DyIR~iavHPt~P--~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv 146 (794)
T KOG0276|consen 72 TGSDDMQIRVFNYNTGEKVK---TFEAHSDYIRSIAVHPTLP--YVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQV 146 (794)
T ss_pred EecCCceEEEEecccceeeE---EeeccccceeeeeecCCCC--eEEecCCccEEEEeeccCceeeeeEEcCcceEEEEE
Confidence 99999999999999998776 8999999999999999988 8999999999999999865 6778999999999999
Q ss_pred EecccCCccEEEEEecCCeEEEEEcCCCceeEEecCCCCcEEEEEEccCC--CEEEEeccCCCCCCeEEEEeCCCCceeE
Q 001477 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADG--TRLFSCGTSKEGESHLVEWNESEGAIKR 581 (1071)
Q Consensus 504 ~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~--~~l~~~~~~~d~~~~i~iwd~~~~~~~~ 581 (1071)
+|+|. |.+.+++++-|++|++|.+....+..++.+|...|+|+.+-+-| .+|++++. |..+++||.++..+++
T Consensus 147 ~fnPk-D~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaD----D~tiKvWDyQtk~CV~ 221 (794)
T KOG0276|consen 147 AFNPK-DPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGAD----DLTIKVWDYQTKSCVQ 221 (794)
T ss_pred EecCC-CccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCC----CceEEEeecchHHHHH
Confidence 99997 45899999999999999999999999999999999999998754 68999885 8889999999999999
Q ss_pred EeecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEc
Q 001477 582 TYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (1071)
Q Consensus 582 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~ 661 (1071)
++.+|.. .|..++|+|.-..+++||+||+++||+..+.+...++.... ..++|++-.+.++.+++|.+.|.|.+ .+
T Consensus 222 TLeGHt~-Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gl--eRvW~I~~~k~~~~i~vG~Deg~i~v-~l 297 (794)
T KOG0276|consen 222 TLEGHTN-NVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGL--ERVWCIAAHKGDGKIAVGFDEGSVTV-KL 297 (794)
T ss_pred Hhhcccc-cceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCC--ceEEEEeecCCCCeEEEeccCCcEEE-Ec
Confidence 9999998 89999999999999999999999999999988888776543 37999999998889999999888765 22
Q ss_pred CChhhhhhhhcCCccccccCCCCCCCCCCccccccCCCCccccccCCCCCCCCCCCCcccccccCCCCcccccccccccc
Q 001477 662 SDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVA 741 (1071)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 741 (1071)
......+. + ...
T Consensus 298 greeP~vs-M-------------------------------------------------------------d~~------ 309 (794)
T KOG0276|consen 298 GREEPAVS-M-------------------------------------------------------------DSN------ 309 (794)
T ss_pred cCCCCcee-e-------------------------------------------------------------cCC------
Confidence 21100000 0 000
Q ss_pred cccCccceeccCCCCCcccceeeecCCCcCCCceEEEEEecccchhhhccccceeEEEecccccCCCCCccceeecceec
Q 001477 742 EDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLW 821 (1071)
Q Consensus 742 ~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~ 821 (1071)
| -.+|.... .|..+.. + +.+.++
T Consensus 310 ---g-KIiwa~~~-------------------ei~~~~~----k---s~~~~~--------------------------- 332 (794)
T KOG0276|consen 310 ---G-KIIWAVHS-------------------EIQAVNL----K---SVGAQK--------------------------- 332 (794)
T ss_pred ---c-cEEEEcCc-------------------eeeeeec----e---eccCcc---------------------------
Confidence 0 01121110 0110000 0 000000
Q ss_pred cCCCCCccccccCCCCCCCCCeEEEEEecCCcEEEEEeCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCCEEEEEe
Q 001477 822 QPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGM 901 (1071)
Q Consensus 822 ~~~~~~~~~~~~~~~~h~~~~v~~v~~s~d~~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~ 901 (1071)
++..|+.+.-..+..+...-....++-||+|+++++++||.-.||..-..+ ..+.+.-....|++ |....|+-.
T Consensus 333 ev~DgErL~LsvKeLgs~eiyPq~L~hsPNGrfV~VcgdGEyiIyTala~R-----nK~fG~~~eFvw~~-dsne~avRe 406 (794)
T KOG0276|consen 333 EVTDGERLPLSVKELGSVEIYPQTLAHSPNGRFVVVCGDGEYIIYTALALR-----NKAFGSGLEFVWAA-DSNEFAVRE 406 (794)
T ss_pred cccCCccccchhhhccccccchHHhccCCCCcEEEEecCccEEEEEeeehh-----hcccccceeEEEcC-CCCeEEEEe
Confidence 111111111101100000122345777999999999999999999743221 12445667889999 777788887
Q ss_pred CCCeEEEEEccCCeEEEEecCcCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeecCCCCCCCCCCCceEEE
Q 001477 902 EDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQ 981 (1071)
Q Consensus 902 ~dg~v~vwd~~~~~~~~~l~~h~~~v~~l~~s~d~~~l~s~~~d~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 981 (1071)
.++.|+++ +..+..++++.... +-.+ -.|.+|...+ ++.+++||-++++.+...-. ....+.
T Consensus 407 s~~~vki~--knfke~ksi~~~~~---~e~i-~gg~Llg~~s-s~~~~fydW~~~~lVrrI~v-----------~~k~v~ 468 (794)
T KOG0276|consen 407 SNGNVKIF--KNFKEHKSIRPDMS---AEGI-FGGPLLGVRS-SDFLCFYDWESGELVRRIEV-----------TSKHVY 468 (794)
T ss_pred cCCceEEE--ecceeccccccccc---eeee-cCCceEEEEe-CCeEEEEEcccceEEEEEee-----------ccceeE
Confidence 88999998 66666666553221 1112 1355555555 55699999999887654332 236799
Q ss_pred EccCCCEEEEEECCeEEEEeCC
Q 001477 982 FHNDQTHLLVVHESQISVYDSK 1003 (1071)
Q Consensus 982 ~s~dg~~l~~~~d~~i~vwd~~ 1003 (1071)
|+.+|.+++.+.|...+++..+
T Consensus 469 w~d~g~lVai~~d~Sfyil~~n 490 (794)
T KOG0276|consen 469 WSDNGELVAIAGDDSFYILKFN 490 (794)
T ss_pred EecCCCEEEEEecCceeEEEec
Confidence 9999999999988887776663
No 21
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=3.3e-38 Score=296.55 Aligned_cols=298 Identities=22% Similarity=0.322 Sum_probs=254.4
Q ss_pred eeEEeec-CCCCeEEEEeecCCCeEEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeEEEE
Q 001477 338 TVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW 416 (1071)
Q Consensus 338 ~~~~~~~-h~~~V~~~~fsp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~ 416 (1071)
....+++ |++.|+.++..+.+..++++++.|.++.+|++......... +...++||+..|..++.
T Consensus 6 ~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~--------------~~r~~~GHsH~v~dv~~ 71 (315)
T KOG0279|consen 6 VLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGV--------------PVRRLTGHSHFVSDVVL 71 (315)
T ss_pred eeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCc--------------eeeeeeccceEecceEE
Confidence 3455666 99999999999998889999999999999999765322211 11227899999999999
Q ss_pred CCCCCEEEEEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccCCceeEEecCC
Q 001477 417 GPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGH 496 (1071)
Q Consensus 417 spd~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h 496 (1071)
++||++.++++.|+++++||+.+++..+ .|.+|...|.+++|++|++ .+++|+.|++|++|++.. .+..++..+
T Consensus 72 s~dg~~alS~swD~~lrlWDl~~g~~t~---~f~GH~~dVlsva~s~dn~--qivSGSrDkTiklwnt~g-~ck~t~~~~ 145 (315)
T KOG0279|consen 72 SSDGNFALSASWDGTLRLWDLATGESTR---RFVGHTKDVLSVAFSTDNR--QIVSGSRDKTIKLWNTLG-VCKYTIHED 145 (315)
T ss_pred ccCCceEEeccccceEEEEEecCCcEEE---EEEecCCceEEEEecCCCc--eeecCCCcceeeeeeecc-cEEEEEecC
Confidence 9999999999999999999999996555 7889999999999999999 699999999999999654 455555443
Q ss_pred --CCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCceeEEecCCCCcEEEEEEccCCCEEEEeccCCCCCCeEEEEeC
Q 001477 497 --EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNE 574 (1071)
Q Consensus 497 --~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~ 574 (1071)
.+.|.|+.|+|+.+..+|++++.|++|++||+++.+....+.+|.+.++.+++||||...++|+. ++.+.+||+
T Consensus 146 ~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgk----dg~~~LwdL 221 (315)
T KOG0279|consen 146 SHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGK----DGEAMLWDL 221 (315)
T ss_pred CCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCC----CceEEEEEc
Confidence 78999999999987799999999999999999999999999999999999999999999999874 888999999
Q ss_pred CCCceeEEeecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCC-------CCCCcceEEEcCCCCEE
Q 001477 575 SEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG-------GLPASPRLRFNKEGSLL 647 (1071)
Q Consensus 575 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-------~~~~v~~~~~s~~~~~l 647 (1071)
+.++.+..+.... .|.+++|+|+.-.|+.+ .+..|+|||++++..+..+.... ......+++|++||..|
T Consensus 222 ~~~k~lysl~a~~--~v~sl~fspnrywL~~a-t~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tL 298 (315)
T KOG0279|consen 222 NEGKNLYSLEAFD--IVNSLCFSPNRYWLCAA-TATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTL 298 (315)
T ss_pred cCCceeEeccCCC--eEeeEEecCCceeEeec-cCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEE
Confidence 9999988777654 79999999986555544 45569999999998887764321 12345788999999999
Q ss_pred EEEeCCCcEEEEEcC
Q 001477 648 AVTTSDNGIKILANS 662 (1071)
Q Consensus 648 ~~~~~dg~v~iw~~~ 662 (1071)
++|..|+.|++|.+.
T Consensus 299 f~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 299 FAGYTDNVIRVWQVA 313 (315)
T ss_pred EeeecCCcEEEEEee
Confidence 999999999999864
No 22
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=1.6e-37 Score=325.89 Aligned_cols=500 Identities=13% Similarity=0.196 Sum_probs=358.8
Q ss_pred CCCCeEEEEeecCCCeEEEEEc--CCCeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeEEEECCCCCE
Q 001477 345 QGSNVMSMDFHPQQQTILLVGT--NVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLM 422 (1071)
Q Consensus 345 h~~~V~~~~fsp~g~~lla~gs--~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~ 422 (1071)
+..+++|++||++|+ ++|+|- ....+++|++.....+.. +..|+..|+|++|+|.++|
T Consensus 77 sRk~~t~vAfS~~Gr-yvatGEcG~~pa~kVw~la~h~vVAE-------------------fvdHKY~vtcvaFsp~~ky 136 (1080)
T KOG1408|consen 77 SRKPLTCVAFSQNGR-YVATGECGRTPASKVWSLAFHGVVAE-------------------FVDHKYNVTCVAFSPGNKY 136 (1080)
T ss_pred cCcceeEEEEcCCCc-EEEecccCCCccceeeeeccccchhh-------------------hhhccccceeeeecCCCcE
Confidence 556999999999998 788874 556899999988765543 6789999999999999999
Q ss_pred EEEEeC--CCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccCCceeEE--------
Q 001477 423 LGVAFS--KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT-------- 492 (1071)
Q Consensus 423 la~~~~--dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~-------- 492 (1071)
+++.+. |-.|.+||++.+.... -..-...|..++|+.||. +++|.+ ...|++|.++.++....
T Consensus 137 vvSVGsQHDMIVnv~dWr~N~~~a----snkiss~Vsav~fsEdgS--YfvT~g-nrHvk~wyl~~~~KykdpiPl~gRs 209 (1080)
T KOG1408|consen 137 VVSVGSQHDMIVNVNDWRVNSSGA----SNKISSVVSAVAFSEDGS--YFVTSG-NRHVKLWYLQIQSKYKDPIPLPGRS 209 (1080)
T ss_pred EEeeccccceEEEhhhhhhccccc----ccccceeEEEEEEccCCc--eeeeee-eeeEEEEEeeccccccCCccccchh
Confidence 998765 5568889877643322 112345799999999999 788887 67899999876552110
Q ss_pred -----ec------------------------CC-----------------CCCeEEEEecccCCccEEEEEecCCeEEEE
Q 001477 493 -----FE------------------------GH-----------------EAPVYSVCPHHKESIQFIFSTAIDGKIKAW 526 (1071)
Q Consensus 493 -----~~------------------------~h-----------------~~~v~~i~~~~~~~~~~l~s~~~d~~i~vw 526 (1071)
++ || +..-+||+.+. .++++|+.+|.|++|
T Consensus 210 ~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcVs~----r~I~cgCa~g~vrlF 285 (1080)
T KOG1408|consen 210 YFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICVSS----RLIACGCAKGMVRLF 285 (1080)
T ss_pred hhccccccchhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhhccccceeeeec----ceEEEeeccceeeec
Confidence 00 11 11223444442 689999999999999
Q ss_pred EcCCCceeEEec--------------------CC----CCcEEEEEEccCCCEEEEeccCCCCCCeEEEEeCCCCceeE-
Q 001477 527 LYDYLGSRVDYD--------------------AP----GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKR- 581 (1071)
Q Consensus 527 d~~~~~~~~~~~--------------------~~----~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~- 581 (1071)
+..+....-.+. .. -....++.|++....|.+.. +|..+++||++.-..+.
T Consensus 286 np~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVY----ndhSlYvWDvrD~~kvgk 361 (1080)
T KOG1408|consen 286 NPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVY----NDHSLYVWDVRDVNKVGK 361 (1080)
T ss_pred CcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEE----cCceEEEEeccccccccc
Confidence 866533221110 00 01234677888888887765 47889999998754332
Q ss_pred --EeecccccceeEEEEeCC-----------CCEEEEEeCCCcEEEEeCCCCceeEE-------------E---------
Q 001477 582 --TYSGFRKRSLGVVQFDTT-----------RNRFLAAGDEFQIKFWDMDNMNMLTT-------------V--------- 626 (1071)
Q Consensus 582 --~~~~~~~~~v~~~~~~~~-----------~~~l~~~~~dg~i~iwd~~~~~~~~~-------------~--------- 626 (1071)
.+--|.. .|+.+.--|- ..-+++++.|++|++|+++.+..-.. .
T Consensus 362 ~~s~lyHS~-ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~ 440 (1080)
T KOG1408|consen 362 CSSMLYHSA-CIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIM 440 (1080)
T ss_pred eeeeeeccc-eeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhh
Confidence 2222332 3444433221 13488999999999999986221000 0
Q ss_pred -------------ecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCChhhhhhhhcCCccccccCCCCCCCCCCccc
Q 001477 627 -------------DADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTI 693 (1071)
Q Consensus 627 -------------~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 693 (1071)
..-+....+.+++.+|+|++|++|..-|++++|++.+- +....+.+|..++..+...-.
T Consensus 441 ~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l-~~~~~~eAHesEilcLeyS~p------- 512 (1080)
T KOG1408|consen 441 HDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQEL-EYTCFMEAHESEILCLEYSFP------- 512 (1080)
T ss_pred hhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhh-hhhhheecccceeEEEeecCc-------
Confidence 00011235789999999999999999999999999887 677778888877654322110
Q ss_pred cccCCCCccccccCCCCCCCCCCCCcccccccCCCCcccccccccccc-cccCccceeccCCCCCcccceeeecCCCcCC
Q 001477 694 NALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVA-EDVDKIKSWRIPDISDPSQIKALRLPDSIAA 772 (1071)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~ 772 (1071)
.-..++++. +.|+-|+++|+.......+ .+ .+|.
T Consensus 513 ---------------------------------------~~~~kLLASasrdRlIHV~Dv~rny~l~q----tl--d~HS 547 (1080)
T KOG1408|consen 513 ---------------------------------------VLTNKLLASASRDRLIHVYDVKRNYDLVQ----TL--DGHS 547 (1080)
T ss_pred ---------------------------------------hhhhHhhhhccCCceEEEEecccccchhh----hh--cccc
Confidence 001133333 4468899999875332211 12 2489
Q ss_pred CceEEEEEeccc--chhhhccccceeEEEecccccCCCCCccceeecceeccCCCCCccccccCCCCCCCCCeEEEEEec
Q 001477 773 SKVVRLIYTNSG--LSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK 850 (1071)
Q Consensus 773 ~~v~~l~~s~~g--~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~v~~s~ 850 (1071)
..|+++.|..+| ..+++++.|..+.+- ... . ..+|.+........ - ...++.|++.|
T Consensus 548 ssITsvKFa~~gln~~MiscGADksimFr-~~q--k----------------~~~g~~f~r~t~t~-~-ktTlYDm~Vdp 606 (1080)
T KOG1408|consen 548 SSITSVKFACNGLNRKMISCGADKSIMFR-VNQ--K----------------ASSGRLFPRHTQTL-S-KTTLYDMAVDP 606 (1080)
T ss_pred cceeEEEEeecCCceEEEeccCchhhhee-hhc--c----------------ccCceecccccccc-c-cceEEEeeeCC
Confidence 999999999888 778999999877542 111 0 01122211111110 1 46789999999
Q ss_pred CCcEEEEEe-CCeEEEEECCCCeEEEEEeC---CCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEccCCeEEEEecCcCCC
Q 001477 851 NDSYVMSAS-GGKVSLFNMMTFKVMTMFMS---PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNR 926 (1071)
Q Consensus 851 d~~~la~~~-dg~i~vwd~~~~~~~~~~~~---~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~~~ 926 (1071)
.-++++++. |..|+|||+++++..+.|++ |.+....+...| .|.+||+...|+++.++|.-+|+++....||...
T Consensus 607 ~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDP-SgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~ 685 (1080)
T KOG1408|consen 607 TSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDP-SGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEA 685 (1080)
T ss_pred CcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECC-CccEEEEeecCCceEEEEeccchhhhhhcCcchh
Confidence 999999999 99999999999999999986 567788899999 9999999999999999999999999999999999
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 001477 927 ITGLAFSPTLNALVSSGADAQLCMWSIDK 955 (1071)
Q Consensus 927 v~~l~~s~d~~~l~s~~~d~~v~vWd~~~ 955 (1071)
|+.+.|++|-+.|++++.||.|.||.+..
T Consensus 686 VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 686 VTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred eeeeeecccchhheeecCCceEEEEECch
Confidence 99999999999999999999999999865
No 23
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=2.9e-36 Score=323.78 Aligned_cols=569 Identities=15% Similarity=0.166 Sum_probs=413.5
Q ss_pred EEeecCCCeEEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeEEEECCCCCEEEEEeCCCe
Q 001477 352 MDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHI 431 (1071)
Q Consensus 352 ~~fsp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~la~~~~dg~ 431 (1071)
..|..-|..++++.+.+.+..+||.+.-..+.- -..+...|+|++-..+ ++.+|+. ..
T Consensus 39 ~~~~~~~~~~~vtt~vgksfqvYd~~kl~ll~v-------------------s~~lp~~I~alas~~~--~vy~A~g-~~ 96 (910)
T KOG1539|consen 39 FRVVALGSTFYVTTCVGKSFQVYDVNKLNLLFV-------------------SKPLPDKITALASDKD--YVYVASG-NK 96 (910)
T ss_pred eeeeecCceEEEEEecCceEEEEeccceEEEEe-------------------cCCCCCceEEEEecCc--eEEEecC-cE
Confidence 556666667888888899999999987665531 1347788999887555 4444432 34
Q ss_pred EEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccCC-cee----EEecCCCCCeEEEEec
Q 001477 432 VHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG-RKQ----YTFEGHEAPVYSVCPH 506 (1071)
Q Consensus 432 i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~~~----~~~~~h~~~v~~i~~~ 506 (1071)
|.+|. .++.++ ..+..|.+.|.-+. +-|. .++++..++.+.+|+..++ ..+ .-++.....|+++ ++
T Consensus 97 i~~~~--rgk~i~--~~~~~~~a~v~~l~--~fGe--~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital-~H 167 (910)
T KOG1539|consen 97 IYAYA--RGKHIR--HTTLLHGAKVHLLL--PFGE--HLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITAL-LH 167 (910)
T ss_pred EEEEE--ccceEE--EEeccccceEEEEe--eecc--eEEEEEccCcEEEEEeccccccccccceeeeccCCceeeE-ec
Confidence 66655 333333 25557777776655 3477 6899999999999998874 221 1122223337776 45
Q ss_pred ccCCccEEEEEecCCeEEEEEcCCCceeEEecCCCCcEEEEEEccCCCEEEEeccCCCCCCeEEEEeCCCCceeEEeecc
Q 001477 507 HKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGF 586 (1071)
Q Consensus 507 ~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~ 586 (1071)
|..-=+.++.|+.+|.+.+|++++++.+..+......|+++.-+|-=..++.|.. +|+|.+++++.++.+.+|+..
T Consensus 168 P~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~----~G~ViifNlK~dkil~sFk~d 243 (910)
T KOG1539|consen 168 PSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLE----NGTVIIFNLKFDKILMSFKQD 243 (910)
T ss_pred chhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEecc----CceEEEEEcccCcEEEEEEcc
Confidence 5544467899999999999999999999999999999999999998888998875 888999999999999999976
Q ss_pred cccceeEEEEeCCCCEEEE-EeCCCcEEEEeCCCCceeEEEe-cCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCh
Q 001477 587 RKRSLGVVQFDTTRNRFLA-AGDEFQIKFWDMDNMNMLTTVD-ADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1071)
Q Consensus 587 ~~~~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~ 664 (1071)
.+ .|+.++|..||+.+++ |+..|.+.+||++..+.+..+. .| ...+....|.|....+++++.|+.+++|-.+++
T Consensus 244 ~g-~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah--~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~ 320 (910)
T KOG1539|consen 244 WG-RVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAH--YGSVTGATFLPGEPVLVTAGADNSLKVWVFDSG 320 (910)
T ss_pred cc-ceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccc--cCCcccceecCCCceEeeccCCCceeEEEeeCC
Confidence 44 8999999999977655 5677999999999988877765 33 347889999999999999999999999877654
Q ss_pred ---hhhhhhhcCCccccccCCCCCCCCCCccccccCCCCccccccCCCCCCCCCCCCcccccccCCCCccccccccc-cc
Q 001477 665 ---VRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKP-RV 740 (1071)
Q Consensus 665 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 740 (1071)
.++++...||..+...+ ++. ...+.. +.
T Consensus 321 dg~pR~LR~R~GHs~Pp~~i------------rfy------------------------------------~~~g~~ils 352 (910)
T KOG1539|consen 321 DGVPRLLRSRGGHSAPPSCI------------RFY------------------------------------GSQGHFILS 352 (910)
T ss_pred CCcchheeeccCCCCCchhe------------eee------------------------------------ccCcEEEEe
Confidence 23444444554332111 000 112222 33
Q ss_pred ccccCccceeccCCCCCcccceeeec---CCC-----------cCCCceEEEEEeccc-----chhhhccccceeEEEec
Q 001477 741 AEDVDKIKSWRIPDISDPSQIKALRL---PDS-----------IAASKVVRLIYTNSG-----LSLLALASNAVHKLWKW 801 (1071)
Q Consensus 741 ~~~~~~v~~w~~~~~~~~~~~~~~~~---~~~-----------~~~~~v~~l~~s~~g-----~~l~~~~~dg~v~vw~~ 801 (1071)
++.|++.+.+.+.. ....+.+.. +.. ..-..|..+++.... +.+.+.-.+...+.|++
T Consensus 353 a~~Drt~r~fs~~~---e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~ 429 (910)
T KOG1539|consen 353 AKQDRTLRSFSVIS---ESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNF 429 (910)
T ss_pred cccCcchhhhhhhH---HHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEec
Confidence 34566677666642 112222222 000 001223333332211 11122222334444443
Q ss_pred ccccCCCCCccceeecceeccCCCCCccccccCC---CCCCCCCeEEEEEecCCcEEEEEe-CCeEEEEECCCCeEEEEE
Q 001477 802 QRTERNPSGKATANVAPQLWQPPSGTLMTNDINE---SKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMF 877 (1071)
Q Consensus 802 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~h~~~~v~~v~~s~d~~~la~~~-dg~i~vwd~~~~~~~~~~ 877 (1071)
.+...-...+.. ..- ...+++++.++.|.+.+.|. .|.|.+|++++|-....+
T Consensus 430 ----------------------~n~~~G~~~L~~~~~~~~-~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf 486 (910)
T KOG1539|consen 430 ----------------------RNKTSGRHVLDPKRFKKD-DINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSF 486 (910)
T ss_pred ----------------------cCcccccEEecCcccccc-CcceEEEEEeccCceEEEeccCCeEEEEEcccCeeeccc
Confidence 332211111110 001 47899999999999999998 899999999999998888
Q ss_pred ---eCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEccCCeEEEEecCcCCCeeEEEEcCCCCEEEEEeCCCcEEEEECC
Q 001477 878 ---MSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSID 954 (1071)
Q Consensus 878 ---~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~~~v~~l~~s~d~~~l~s~~~d~~v~vWd~~ 954 (1071)
..|.++|+.++... -++.+++++.+|-+.+||..+..++..++ -...++++..+.....++.+..|-.|+++|+.
T Consensus 487 ~~~~ah~~~V~gla~D~-~n~~~vsa~~~Gilkfw~f~~k~l~~~l~-l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~ 564 (910)
T KOG1539|consen 487 GDSPAHKGEVTGLAVDG-TNRLLVSAGADGILKFWDFKKKVLKKSLR-LGSSITGIVYHRVSDLLAIALDDFSIRVVDVV 564 (910)
T ss_pred ccCccccCceeEEEecC-CCceEEEccCcceEEEEecCCcceeeeec-cCCCcceeeeeehhhhhhhhcCceeEEEEEch
Confidence 57999999999988 88899999999999999999999888887 34558899999999999999999999999999
Q ss_pred CCceeeeeeecCCCCCCCCCCCceEEEEccCCCEEEEE-ECCeEEEEeC-CCCceeecCCCCCCCCCeeEEEEecCCcEE
Q 001477 955 KWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLV 1032 (1071)
Q Consensus 955 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d~~i~vwd~-~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l 1032 (1071)
+.+ ..+...||. ..|++++|||||++|+++ .|++|++||+ ++.++..+.. ..+.+++.|||+|.+|
T Consensus 565 t~k-----vvR~f~gh~---nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~v----d~~~~sls~SPngD~L 632 (910)
T KOG1539|consen 565 TRK-----VVREFWGHG---NRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLV----DSPCTSLSFSPNGDFL 632 (910)
T ss_pred hhh-----hhHHhhccc---cceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEec----CCcceeeEECCCCCEE
Confidence 855 456677776 789999999999999995 6999999999 8887776654 6789999999999999
Q ss_pred EEEeCC-CeEEEEEc
Q 001477 1033 YAGFCD-GAIGVFDA 1046 (1071)
Q Consensus 1033 ~t~~~D-g~i~vwd~ 1046 (1071)
||+..| .-|++|-=
T Consensus 633 AT~Hvd~~gIylWsN 647 (910)
T KOG1539|consen 633 ATVHVDQNGIYLWSN 647 (910)
T ss_pred EEEEecCceEEEEEc
Confidence 999999 56999953
No 24
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=2.5e-36 Score=324.27 Aligned_cols=561 Identities=14% Similarity=0.187 Sum_probs=405.3
Q ss_pred CCCCeEEEEeecCCCeEEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeEEEECCCCCEEE
Q 001477 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1071)
Q Consensus 345 h~~~V~~~~fsp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~la 424 (1071)
+.+.|+|++=..+-- ++|. ...|.+|.- |+.+.. .+.+|.+.|.-+.- =|.+++
T Consensus 75 lp~~I~alas~~~~v-y~A~---g~~i~~~~r--gk~i~~------------------~~~~~~a~v~~l~~--fGe~li 128 (910)
T KOG1539|consen 75 LPDKITALASDKDYV-YVAS---GNKIYAYAR--GKHIRH------------------TTLLHGAKVHLLLP--FGEHLI 128 (910)
T ss_pred CCCceEEEEecCceE-EEec---CcEEEEEEc--cceEEE------------------EeccccceEEEEee--ecceEE
Confidence 778999998776642 3332 345666653 322221 14456666665543 488999
Q ss_pred EEeCCCeEEEEEecCC-Cccc-eeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccCCceeEEecCCCCCeEE
Q 001477 425 VAFSKHIVHLYTYNPT-GELR-QHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYS 502 (1071)
Q Consensus 425 ~~~~dg~i~iwd~~~~-~~~~-~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~ 502 (1071)
++..++.+.||+..++ .... ....++...+.|+++. +|..--..++.|+.+|.+++|++++++.+++++++...|++
T Consensus 129 a~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ 207 (910)
T KOG1539|consen 129 AVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITA 207 (910)
T ss_pred EEEccCcEEEEEeccccccccccceeeeccCCceeeEe-cchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeE
Confidence 9999999999999884 2211 1112222233377664 45432225889999999999999999999999999999999
Q ss_pred EEecccCCccEEEEEecCCeEEEEEcCCCceeEEecCCCCcEEEEEEccCCCEEEEeccCCCCCCeEEEEeCCCCceeEE
Q 001477 503 VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRT 582 (1071)
Q Consensus 503 i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~ 582 (1071)
+.-+|-- +.++.|..+|+|.+++++..+.+..++...+.|++++|..||+.+++.+. ..|.+.+||++..+.+..
T Consensus 208 ieqsPaL--DVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~---~~G~m~~wDLe~kkl~~v 282 (910)
T KOG1539|consen 208 IEQSPAL--DVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGR---SNGDMAFWDLEKKKLINV 282 (910)
T ss_pred eccCCcc--eEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEecc---CCceEEEEEcCCCeeeee
Confidence 9988876 68999999999999999999999999887899999999999998877653 367799999998888877
Q ss_pred eecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCCc----eeEEEecCCCCCCcceEEEc-CCCCEEEEEeCCCcEE
Q 001477 583 YSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN----MLTTVDADGGLPASPRLRFN-KEGSLLAVTTSDNGIK 657 (1071)
Q Consensus 583 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~dg~v~ 657 (1071)
....+.+.+....|.|....+++++.|..+++|=.+++. .+..-. +|..+..++.|. .+|..+.+++.|++++
T Consensus 283 ~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~--GHs~Pp~~irfy~~~g~~ilsa~~Drt~r 360 (910)
T KOG1539|consen 283 TRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRG--GHSAPPSCIRFYGSQGHFILSAKQDRTLR 360 (910)
T ss_pred eeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeecc--CCCCCchheeeeccCcEEEEecccCcchh
Confidence 775444488889999999999999999999988666443 233333 445578899998 5889999999999999
Q ss_pred EEEcCChhhhhhhh-cCCccccccCCCCCCCCCCccccccCCCCccccccCCCCCCCCCCCCcccccccCCCCccccccc
Q 001477 658 ILANSDGVRLLRML-EGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDV 736 (1071)
Q Consensus 658 iw~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 736 (1071)
.+++.... .-+.+ +.|.... .+..+.. ... ....++...++.....-..-.
T Consensus 361 ~fs~~~e~-~~~~l~~~~~~~~--------------~kk~~~~---------~~~----~~k~p~i~~fa~~~~RE~~W~ 412 (910)
T KOG1539|consen 361 SFSVISES-QSQELGQLHNKKR--------------AKKVNVF---------STE----KLKLPPIVEFAFENAREKEWD 412 (910)
T ss_pred hhhhhHHH-HhHhhcccccccc--------------ccccccc---------chh----hhcCCcceeeecccchhhhhc
Confidence 98875441 11111 1111000 0000000 000 000011111111111112222
Q ss_pred cccccc-ccCccceeccCCCCCcccceeeecCCCcCCCceEEEEEecccchhhhccccceeEEEecccccCCCCCcccee
Q 001477 737 KPRVAE-DVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATAN 815 (1071)
Q Consensus 737 ~~~~~~-~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~ 815 (1071)
+.+++. ++...+.|+........-.-. ..+.......+++++.++.|+..+.|.+.|+|-+|++..
T Consensus 413 Nv~~~h~~~~~~~tW~~~n~~~G~~~L~-~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQS------------ 479 (910)
T KOG1539|consen 413 NVITAHKGKRSAYTWNFRNKTSGRHVLD-PKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQS------------ 479 (910)
T ss_pred ceeEEecCcceEEEEeccCcccccEEec-CccccccCcceEEEEEeccCceEEEeccCCeEEEEEccc------------
Confidence 333333 347788999886544221110 000111446789999999999999999999999987654
Q ss_pred ecceeccCCCCCccccccCCCCCCCCCeEEEEEecCCcEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCC
Q 001477 816 VAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDN 894 (1071)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~v~~s~d~~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~ 894 (1071)
|...........| ..+|+.++...-++.+++++ +|-+.+||.+...++..+. -...++++.++. ..
T Consensus 480 ----------Gi~r~sf~~~~ah-~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~-l~~~~~~iv~hr-~s 546 (910)
T KOG1539|consen 480 ----------GIHRKSFGDSPAH-KGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLR-LGSSITGIVYHR-VS 546 (910)
T ss_pred ----------CeeecccccCccc-cCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeec-cCCCcceeeeee-hh
Confidence 2222211112237 99999999999889999988 9999999999888777776 445688888888 77
Q ss_pred CEEEEEeCCCeEEEEEccCCeEEEEecCcCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeecCCCCCCCCC
Q 001477 895 NIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPL 974 (1071)
Q Consensus 895 ~~la~g~~dg~v~vwd~~~~~~~~~l~~h~~~v~~l~~s~d~~~l~s~~~d~~v~vWd~~~~~~~~~~~~~~~~~~~~~~ 974 (1071)
.++|.+.+|-.|+++|..+.+.++.+.||.+.|++++|||||++|++++.|++|++||+.++..+....+.
T Consensus 547 ~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd--------- 617 (910)
T KOG1539|consen 547 DLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVD--------- 617 (910)
T ss_pred hhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecC---------
Confidence 89999999999999999999999999999999999999999999999999999999999999877654433
Q ss_pred CCceEEEEccCCCEEEEEE-C-CeEEEEeC
Q 001477 975 VGETKVQFHNDQTHLLVVH-E-SQISVYDS 1002 (1071)
Q Consensus 975 ~~v~~~~~s~dg~~l~~~~-d-~~i~vwd~ 1002 (1071)
.+.+.+.|||.|.+||+++ | ..|++|.=
T Consensus 618 ~~~~sls~SPngD~LAT~Hvd~~gIylWsN 647 (910)
T KOG1539|consen 618 SPCTSLSFSPNGDFLATVHVDQNGIYLWSN 647 (910)
T ss_pred CcceeeEECCCCCEEEEEEecCceEEEEEc
Confidence 4578999999999999974 3 68999974
No 25
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=4.2e-36 Score=316.06 Aligned_cols=541 Identities=15% Similarity=0.197 Sum_probs=382.7
Q ss_pred EEeecCCCeEEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeEEEECCCCC---EEEEEeC
Q 001477 352 MDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGL---MLGVAFS 428 (1071)
Q Consensus 352 ~~fsp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd~~---~la~~~~ 428 (1071)
..|.|.+ ++|.|. ...|.+||..+..... .+.||.++|+|+.|-|+.+ ++++|+.
T Consensus 20 ~sw~~~~--~vafGa-~~~Iav~dp~k~~i~t-------------------~l~GH~a~VnC~~~l~~s~~~a~~vsG~s 77 (764)
T KOG1063|consen 20 SSWGPGG--LVAFGA-GPAIAVADPEKILIVT-------------------TLDGHVARVNCVHWLPTSEIVAEMVSGDS 77 (764)
T ss_pred ccccccc--eEEecC-CceEEEeCcccceeEE-------------------eccCCccceEEEEEcccccccceEEEccC
Confidence 3456665 466664 6789999987653222 2789999999999999888 8999999
Q ss_pred CCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccCCc--eeEEecCC--CCCeEEEE
Q 001477 429 KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR--KQYTFEGH--EAPVYSVC 504 (1071)
Q Consensus 429 dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~h--~~~v~~i~ 504 (1071)
|+.|.+|.++. +.+.....+++|...+.|+ ...-. .......|+.+.+||.+..+ +...++-. ..-..|++
T Consensus 78 D~~v~lW~l~~-~~~~~i~~~~g~~~~~~cv--~a~~~--~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~ 152 (764)
T KOG1063|consen 78 DGRVILWKLRD-EYLIKIYTIQGHCKECVCV--VARSS--VMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLA 152 (764)
T ss_pred CCcEEEEEEee-hheEEEEeecCcceeEEEE--Eeeee--EEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHh
Confidence 99999999994 3344555777766555554 33222 22223689999999985554 22233222 22234555
Q ss_pred ecccCCccEEEEEecCCeEEEEEcCCC--ceeEEecCCCCcEEEEEEccCCC---EEEEeccCCCCCCeEEEEeCCCCc-
Q 001477 505 PHHKESIQFIFSTAIDGKIKAWLYDYL--GSRVDYDAPGNWCTMMAYSADGT---RLFSCGTSKEGESHLVEWNESEGA- 578 (1071)
Q Consensus 505 ~~~~~~~~~l~s~~~d~~i~vwd~~~~--~~~~~~~~~~~~i~~~~~s~~~~---~l~~~~~~~d~~~~i~iwd~~~~~- 578 (1071)
+.++.+.-.++.|+.+..|.++.-... .....+.+|..+|.+++|...+. +|++++ +|..|++|.+.-+.
T Consensus 153 ~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~S----QD~yIRiW~i~~~~~ 228 (764)
T KOG1063|consen 153 ALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSS----QDRYIRIWRIVLGDD 228 (764)
T ss_pred hhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecC----CceEEEEEEEEecCC
Confidence 566444355677778888888865533 34557899999999999987554 455554 48899999874222
Q ss_pred --------------------eeEE----------eecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCCcee--EE-
Q 001477 579 --------------------IKRT----------YSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNML--TT- 625 (1071)
Q Consensus 579 --------------------~~~~----------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~- 625 (1071)
.... +.||.+ .|.++.|+|.+..|++++.|.++.+|...+..-+ ..
T Consensus 229 ~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeD-WV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~v 307 (764)
T KOG1063|consen 229 EDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHED-WVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVV 307 (764)
T ss_pred ccccccccccccccCCceeeeeeeEEEEEehhhhhcCccc-ceEEEEEccchhhheecccCcceEEEecCCccceEEEEE
Confidence 1111 237777 8999999999999999999999999998765322 22
Q ss_pred -Eec-CCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCChhhhhhhhcCCccccccCCCCCCCCCCccccccCCCCccc
Q 001477 626 -VDA-DGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVS 703 (1071)
Q Consensus 626 -~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 703 (1071)
+.. .+.........|+|+++.+++-+..|..++|...+..
T Consensus 308 RlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~-------------------------------------- 349 (764)
T KOG1063|consen 308 RLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKT-------------------------------------- 349 (764)
T ss_pred EeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCcc--------------------------------------
Confidence 211 1222346889999999999999999999999832220
Q ss_pred cccCCCCCCCCCCCCcccccccCCCCcccccccccccccccCccceeccCCCCCcccceeeecCCCcCCCceEEEEEecc
Q 001477 704 AAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNS 783 (1071)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~ 783 (1071)
.|.... . ..+|.+.|++++|.|.
T Consensus 350 ---------------------------------------------~w~~~~----------~--iSGH~~~V~dv~W~ps 372 (764)
T KOG1063|consen 350 ---------------------------------------------FWTQEP----------V--ISGHVDGVKDVDWDPS 372 (764)
T ss_pred ---------------------------------------------ceeecc----------c--cccccccceeeeecCC
Confidence 011100 0 0137889999999999
Q ss_pred cchhhhccccceeEEEecccccCCCCCccceeecceeccCCCCCccccccCCCCCCCCCeEEEEEecCCcEEEEEe-CCe
Q 001477 784 GLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGK 862 (1071)
Q Consensus 784 g~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~v~~s~d~~~la~~~-dg~ 862 (1071)
|.+|++.+.|-+-|++..- |+... |.- ..+ .+ .| ...++|++|-+....+++|. ...
T Consensus 373 GeflLsvs~DQTTRlFa~w-------g~q~~------wHE----iaR--PQ--iH-GyDl~c~~~vn~~~~FVSgAdEKV 430 (764)
T KOG1063|consen 373 GEFLLSVSLDQTTRLFARW-------GRQQE------WHE----IAR--PQ--IH-GYDLTCLSFVNEDLQFVSGADEKV 430 (764)
T ss_pred CCEEEEeccccceeeeccc-------ccccc------eee----ecc--cc--cc-cccceeeehccCCceeeeccccee
Confidence 9999999999999987432 11100 110 111 11 16 78899999988556666666 456
Q ss_pred EEEEECC-------------------------------------------CCeE--------------------------
Q 001477 863 VSLFNMM-------------------------------------------TFKV-------------------------- 873 (1071)
Q Consensus 863 i~vwd~~-------------------------------------------~~~~-------------------------- 873 (1071)
+++|+.. +|..
T Consensus 431 lRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq 510 (764)
T KOG1063|consen 431 LRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQ 510 (764)
T ss_pred eeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHH
Confidence 7888762 0000
Q ss_pred -------EEEEeCCCCCeEEEEEcCCCCCEEEEEeCCC-----eEEEEEccCCeEEEEecCcCCCeeEEEEcCCCCEEEE
Q 001477 874 -------MTMFMSPPPAATFLAFHPQDNNIIAIGMEDS-----SVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVS 941 (1071)
Q Consensus 874 -------~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg-----~v~vwd~~~~~~~~~l~~h~~~v~~l~~s~d~~~l~s 941 (1071)
++.+.||..+|.+++.+| +++++|+++... .|++|+..+...++.+.+|+-.|+.|+|||||++|++
T Consensus 511 ~~tLwPEv~KLYGHGyEv~~l~~s~-~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLs 589 (764)
T KOG1063|consen 511 QNTLWPEVHKLYGHGYEVYALAISP-TGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLS 589 (764)
T ss_pred HhccchhhHHhccCceeEEEEEecC-CCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEE
Confidence 112247888999999999 999999998653 6999999999888999999999999999999999999
Q ss_pred EeCCCcEEEEECCCCceeeeeeecCCCCCCCCCCCceEEEEccCCCEEEEE-ECCeEEEEeC-CC--CceeecCCCCCCC
Q 001477 942 SGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQISVYDS-KL--ECSRSWSPKDALP 1017 (1071)
Q Consensus 942 ~~~d~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d~~i~vwd~-~~--~~~~~~~~~~~h~ 1017 (1071)
+|+|+++.+|........... ......|. .-|.++.|+||+++++++ .|..|+||.. +. +.+... ....++
T Consensus 590 vsRDRt~sl~~~~~~~~~e~~-fa~~k~Ht---RIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~-a~~~~~ 664 (764)
T KOG1063|consen 590 VSRDRTVSLYEVQEDIKDEFR-FACLKAHT---RIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRF-ACLKFS 664 (764)
T ss_pred eecCceEEeeeeecccchhhh-hccccccc---eEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhh-chhccC
Confidence 999999999998654432221 22233443 678999999999999995 6999999999 44 444443 234568
Q ss_pred CCeeEEEEecC-----CcEEEEEeCCCeEEEEEcC
Q 001477 1018 APISSAIYSCD-----GLLVYAGFCDGAIGVFDAE 1047 (1071)
Q Consensus 1018 ~~v~~~~~s~d-----g~~l~t~~~Dg~i~vwd~~ 1047 (1071)
..|+++++.|- +..++.|-+.|.|.+|...
T Consensus 665 ~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 665 LAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred CceeeEEeeccccccccceEEEEecccEEEEEecc
Confidence 99999999772 2267889999999999954
No 26
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.2e-36 Score=310.34 Aligned_cols=464 Identities=16% Similarity=0.206 Sum_probs=352.8
Q ss_pred cccCCCCeeEEEECCCCCEEEEEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEE
Q 001477 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1071)
Q Consensus 404 ~~~h~~~v~~~~~spd~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd 483 (1071)
+..++..|.++.|+|...++.++-.+|.|.|||.++...++ .+.-..-||++..|-+..+ ++++|++|..|++++
T Consensus 9 ~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVk---sfeV~~~PvRa~kfiaRkn--Wiv~GsDD~~IrVfn 83 (794)
T KOG0276|consen 9 FQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVK---SFEVSEVPVRAAKFIARKN--WIVTGSDDMQIRVFN 83 (794)
T ss_pred hhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeee---eeeecccchhhheeeeccc--eEEEecCCceEEEEe
Confidence 44589999999999999999999999999999999988777 6667788999999998777 899999999999999
Q ss_pred ccCCceeEEecCCCCCeEEEEecccCCccEEEEEecCCeEEEEEcCCC-ceeEEecCCCCcEEEEEEcc-CCCEEEEecc
Q 001477 484 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL-GSRVDYDAPGNWCTMMAYSA-DGTRLFSCGT 561 (1071)
Q Consensus 484 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~-~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~ 561 (1071)
..+++.++.|..|.+.|.+++.+|.. .+++++|.|-+|++||.+.. .+...+.+|.+.|.+++|+| |.+.+++++.
T Consensus 84 ynt~ekV~~FeAH~DyIR~iavHPt~--P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sL 161 (794)
T KOG0276|consen 84 YNTGEKVKTFEAHSDYIRSIAVHPTL--PYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASL 161 (794)
T ss_pred cccceeeEEeeccccceeeeeecCCC--CeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeec
Confidence 99999999999999999999999987 79999999999999999865 45678999999999999999 6678889886
Q ss_pred CCCCCCeEEEEeCCCCceeEEeecccccceeEEEEeCCC--CEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEE
Q 001477 562 SKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR--NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLR 639 (1071)
Q Consensus 562 ~~d~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 639 (1071)
|++|++|.+.+..+..++.+|.. .|+++.+-+.| .++++|++|.+|+|||..+..++.++++|.+ .|+.+.
T Consensus 162 ----DrTVKVWslgs~~~nfTl~gHek-GVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~--Nvs~v~ 234 (794)
T KOG0276|consen 162 ----DRTVKVWSLGSPHPNFTLEGHEK-GVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTN--NVSFVF 234 (794)
T ss_pred ----cccEEEEEcCCCCCceeeecccc-CcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccc--cceEEE
Confidence 88899999999999999999998 89999998755 7999999999999999999999999998866 799999
Q ss_pred EcCCCCEEEEEeCCCcEEEEEcCChhhhhhhhcCCccccccCCCCCCCCCCccccccCCCCccccccCCCCCCCCCCCCc
Q 001477 640 FNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPA 719 (1071)
Q Consensus 640 ~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 719 (1071)
|+|.-..+++|+.||+++||+..+- ++..++.-
T Consensus 235 fhp~lpiiisgsEDGTvriWhs~Ty-~lE~tLn~---------------------------------------------- 267 (794)
T KOG0276|consen 235 FHPELPIIISGSEDGTVRIWNSKTY-KLEKTLNY---------------------------------------------- 267 (794)
T ss_pred ecCCCcEEEEecCCccEEEecCcce-ehhhhhhc----------------------------------------------
Confidence 9999999999999999999997665 22222110
Q ss_pred ccccccCCCCcccccccccccccccCccceeccCCCCCcccceeeecCCCcCCCceEEEEEecccchhhhccccceeEEE
Q 001477 720 VSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLW 799 (1071)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~~~~~dg~v~vw 799 (1071)
.-.++.+++..+.+..+++|...|.+.+=
T Consensus 268 ---------------------------------------------------gleRvW~I~~~k~~~~i~vG~Deg~i~v~ 296 (794)
T KOG0276|consen 268 ---------------------------------------------------GLERVWCIAAHKGDGKIAVGFDEGSVTVK 296 (794)
T ss_pred ---------------------------------------------------CCceEEEEeecCCCCeEEEeccCCcEEEE
Confidence 22456777777777777888877776651
Q ss_pred ecccccCCCCCccceeecceeccCCCCCccccccCCCCCCCCCeEEEEEecCCcEEEEEeC--CeEEEE------ECCCC
Q 001477 800 KWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASG--GKVSLF------NMMTF 871 (1071)
Q Consensus 800 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~v~~s~d~~~la~~~d--g~i~vw------d~~~~ 871 (1071)
+ ......+.+++.|+.+-+... -.+.+- ++..|
T Consensus 297 -l--------------------------------------greeP~vsMd~~gKIiwa~~~ei~~~~~ks~~~~~ev~Dg 337 (794)
T KOG0276|consen 297 -L--------------------------------------GREEPAVSMDSNGKIIWAVHSEIQAVNLKSVGAQKEVTDG 337 (794)
T ss_pred -c--------------------------------------cCCCCceeecCCccEEEEcCceeeeeeceeccCcccccCC
Confidence 0 122223445555554443321 111111 22222
Q ss_pred eEEE----EEeCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEccCCeEEEEecCcCCCeeEEEEcCCCCEEEEEeCCCc
Q 001477 872 KVMT----MFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQ 947 (1071)
Q Consensus 872 ~~~~----~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~~~v~~l~~s~d~~~l~s~~~d~~ 947 (1071)
+.+. .+..-.-....++-+| +|++++++ .||.-.||..-.. -..+.+.-....|++|....+.--.++.
T Consensus 338 ErL~LsvKeLgs~eiyPq~L~hsP-NGrfV~Vc-gdGEyiIyTala~-----RnK~fG~~~eFvw~~dsne~avRes~~~ 410 (794)
T KOG0276|consen 338 ERLPLSVKELGSVEIYPQTLAHSP-NGRFVVVC-GDGEYIIYTALAL-----RNKAFGSGLEFVWAADSNEFAVRESNGN 410 (794)
T ss_pred ccccchhhhccccccchHHhccCC-CCcEEEEe-cCccEEEEEeeeh-----hhcccccceeEEEcCCCCeEEEEecCCc
Confidence 2211 1111111234678889 88888766 4788888863211 1123445577899999888888877888
Q ss_pred EEEEECCCCceeeeeeecCCCCCCCCCCCceEEEEccCCCEEEEEECCeEEEEeC-CCCceeecCCCCCCCCCeeEEEEe
Q 001477 948 LCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDS-KLECSRSWSPKDALPAPISSAIYS 1026 (1071)
Q Consensus 948 v~vWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~-~~~~~~~~~~~~~h~~~v~~~~~s 1026 (1071)
|+++ ++.+..+..... ....+--.|.+|.+.+++.+++||. ++..++.+.. ....+.|+
T Consensus 411 vki~--knfke~ksi~~~------------~~~e~i~gg~Llg~~ss~~~~fydW~~~~lVrrI~v------~~k~v~w~ 470 (794)
T KOG0276|consen 411 VKIF--KNFKEHKSIRPD------------MSAEGIFGGPLLGVRSSDFLCFYDWESGELVRRIEV------TSKHVYWS 470 (794)
T ss_pred eEEE--ecceeccccccc------------cceeeecCCceEEEEeCCeEEEEEcccceEEEEEee------ccceeEEe
Confidence 9988 555544322111 1133344567777788999999998 7777777644 34689999
Q ss_pred cCCcEEEEEeCCCeEEEEEc
Q 001477 1027 CDGLLVYAGFCDGAIGVFDA 1046 (1071)
Q Consensus 1027 ~dg~~l~t~~~Dg~i~vwd~ 1046 (1071)
.+|.+++.++.|. .++..+
T Consensus 471 d~g~lVai~~d~S-fyil~~ 489 (794)
T KOG0276|consen 471 DNGELVAIAGDDS-FYILKF 489 (794)
T ss_pred cCCCEEEEEecCc-eeEEEe
Confidence 9999999888654 444443
No 27
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=2.7e-37 Score=291.96 Aligned_cols=248 Identities=16% Similarity=0.223 Sum_probs=228.9
Q ss_pred cccCCCCeeEEEECCCCCEEEEEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEE
Q 001477 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1071)
Q Consensus 404 ~~~h~~~v~~~~~spd~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd 483 (1071)
+++|.+.|.++.|++|+++|++++.||.+.|||.-+..... .++-....|..++|+|.|+ +++.|+-|+...||+
T Consensus 51 LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~h---aipl~s~WVMtCA~sPSg~--~VAcGGLdN~Csiy~ 125 (343)
T KOG0286|consen 51 LKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVH---AIPLPSSWVMTCAYSPSGN--FVACGGLDNKCSIYP 125 (343)
T ss_pred ecccccceeeeEecCCcCeEEeeccCCeEEEEEccccccee---EEecCceeEEEEEECCCCC--eEEecCcCceeEEEe
Confidence 78999999999999999999999999999999998876554 4555678899999999999 899999999999999
Q ss_pred ccCC------ceeEEecCCCCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCceeEEecCCCCcEEEEEEcc-CCCEE
Q 001477 484 VVAG------RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSA-DGTRL 556 (1071)
Q Consensus 484 ~~~~------~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l 556 (1071)
+.+. +..+.+.+|.+.+.++.|..+ ..|++++.|.+..+||+++++....+.+|.+.|.++.++| +++.+
T Consensus 126 ls~~d~~g~~~v~r~l~gHtgylScC~f~dD---~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntF 202 (343)
T KOG0286|consen 126 LSTRDAEGNVRVSRELAGHTGYLSCCRFLDD---NHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTF 202 (343)
T ss_pred cccccccccceeeeeecCccceeEEEEEcCC---CceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeE
Confidence 9855 345678999999999999863 6899999999999999999999999999999999999999 99999
Q ss_pred EEeccCCCCCCeEEEEeCCCCceeEEeecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcc
Q 001477 557 FSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASP 636 (1071)
Q Consensus 557 ~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 636 (1071)
++++- |...++||++.+..+++|.+|.. .|++++|.|+|.-+++|++|++.++||++..+.+..++.......|+
T Consensus 203 vSg~c----D~~aklWD~R~~~c~qtF~ghes-DINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~git 277 (343)
T KOG0286|consen 203 VSGGC----DKSAKLWDVRSGQCVQTFEGHES-DINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGIT 277 (343)
T ss_pred Eeccc----ccceeeeeccCcceeEeeccccc-ccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCce
Confidence 99986 77899999999999999999998 89999999999999999999999999999999999998777777899
Q ss_pred eEEEcCCCCEEEEEeCCCcEEEEEcCCh
Q 001477 637 RLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1071)
Q Consensus 637 ~~~~s~~~~~l~~~~~dg~v~iw~~~~~ 664 (1071)
+++|+..|++|++|..|.++.+||.-.+
T Consensus 278 Sv~FS~SGRlLfagy~d~~c~vWDtlk~ 305 (343)
T KOG0286|consen 278 SVAFSKSGRLLFAGYDDFTCNVWDTLKG 305 (343)
T ss_pred eEEEcccccEEEeeecCCceeEeecccc
Confidence 9999999999999999999999997544
No 28
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.7e-35 Score=315.08 Aligned_cols=554 Identities=16% Similarity=0.245 Sum_probs=384.8
Q ss_pred CCCeEEEEeecCCCeEEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeEEEECCCCCEEEE
Q 001477 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1071)
Q Consensus 346 ~~~V~~~~fsp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~la~ 425 (1071)
+..|..++|+|..+. +.++-.+|.|++||.+.+..+.. +.+|.++|..++|+|++.++++
T Consensus 9 SsRvKglsFHP~rPw-ILtslHsG~IQlWDYRM~tli~r-------------------FdeHdGpVRgv~FH~~qplFVS 68 (1202)
T KOG0292|consen 9 SSRVKGLSFHPKRPW-ILTSLHSGVIQLWDYRMGTLIDR-------------------FDEHDGPVRGVDFHPTQPLFVS 68 (1202)
T ss_pred cccccceecCCCCCE-EEEeecCceeeeehhhhhhHHhh-------------------hhccCCccceeeecCCCCeEEe
Confidence 568999999999985 56778899999999999888765 7889999999999999999999
Q ss_pred EeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccCCceeEEecCCCCCeEEEEe
Q 001477 426 AFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCP 505 (1071)
Q Consensus 426 ~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~ 505 (1071)
|+.|-.|++|+.++.+++. ++.||-.-|+.+.|++.-. +++++|+|.+|+||++.+++++..+.||...|.|..|
T Consensus 69 GGDDykIkVWnYk~rrclf---tL~GHlDYVRt~~FHheyP--WIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqF 143 (1202)
T KOG0292|consen 69 GGDDYKIKVWNYKTRRCLF---TLLGHLDYVRTVFFHHEYP--WILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQF 143 (1202)
T ss_pred cCCccEEEEEecccceehh---hhccccceeEEeeccCCCc--eEEEccCCCeEEEEeccCCceEEEEecCceEEEeecc
Confidence 9999999999999988776 8889999999999999877 8999999999999999999999999999999999999
Q ss_pred cccCCccEEEEEecCCeEEEEEcCCCc-----------------------------eeEEecCCCCcEEEEEEccCCCEE
Q 001477 506 HHKESIQFIFSTAIDGKIKAWLYDYLG-----------------------------SRVDYDAPGNWCTMMAYSADGTRL 556 (1071)
Q Consensus 506 ~~~~~~~~l~s~~~d~~i~vwd~~~~~-----------------------------~~~~~~~~~~~i~~~~~s~~~~~l 556 (1071)
+|.. ..++++|-|.+||+||+...+ ....+.+|...|+-++|+|.-..+
T Consensus 144 hptE--DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpli 221 (1202)
T KOG0292|consen 144 HPTE--DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLI 221 (1202)
T ss_pred CCcc--ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceE
Confidence 9977 799999999999999975311 012467888899999999999999
Q ss_pred EEeccCCCCCCeEEEEeCCCCc--eeEEeecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCC
Q 001477 557 FSCGTSKEGESHLVEWNESEGA--IKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPA 634 (1071)
Q Consensus 557 ~~~~~~~d~~~~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 634 (1071)
++|+. |..|++|.+...+ .+.+..+|.+ .|.++-|+|..+.+++.|+|++|+|||+.....+.++.... ..
T Consensus 222 VSG~D----DRqVKlWrmnetKaWEvDtcrgH~n-nVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrren--dR 294 (1202)
T KOG0292|consen 222 VSGAD----DRQVKLWRMNETKAWEVDTCRGHYN-NVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRREN--DR 294 (1202)
T ss_pred EecCC----cceeeEEEeccccceeehhhhcccC-CcceEEecCccceeEecCCCccEEEEecccccceeeeeccC--Ce
Confidence 99985 7789999987544 4567788887 89999999999999999999999999999999999986443 36
Q ss_pred cceEEEcCCCCEEEEEeCCCcEEEEEcCChhhhhhhhcCCccccccCCCCCCCCCCccccccCCCCccccccCCCCCCCC
Q 001477 635 SPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPD 714 (1071)
Q Consensus 635 v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 714 (1071)
.+.++-+|..+++++|.+. .+.+|.+... +...
T Consensus 295 FW~laahP~lNLfAAgHDs-Gm~VFkleRE-rpa~--------------------------------------------- 327 (1202)
T KOG0292|consen 295 FWILAAHPELNLFAAGHDS-GMIVFKLERE-RPAY--------------------------------------------- 327 (1202)
T ss_pred EEEEEecCCcceeeeecCC-ceEEEEEccc-CceE---------------------------------------------
Confidence 8999999999988877655 5566666432 1000
Q ss_pred CCCCcccccccCCCCcccccccccccccccCccceeccCCCCCcccceeeecCCCcCCCceEEEEEecccchhhhccc--
Q 001477 715 RGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALAS-- 792 (1071)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~~~~~-- 792 (1071)
.-.+..+..-.+..|+.+|+.+...... ..+..++. ....+.++.|+|....++.+++
T Consensus 328 ------------------~v~~n~LfYvkd~~i~~~d~~t~~d~~v-~~lr~~g~-~~~~~~smsYNpae~~vlics~~~ 387 (1202)
T KOG0292|consen 328 ------------------AVNGNGLFYVKDRFIRSYDLRTQKDTAV-ASLRRPGT-LWQPPRSLSYNPAENAVLICSNLD 387 (1202)
T ss_pred ------------------EEcCCEEEEEccceEEeeecccccccee-EeccCCCc-ccCCcceeeeccccCeEEEEeccC
Confidence 1112222333367788888876333222 22222221 3467789999998776555532
Q ss_pred cceeEEEecccccCCCCCccceeecceeccCCCCCccccccCCCCCCCCCeEEEEEecCCcEEEEEeCCeEEEEECCCCe
Q 001477 793 NAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFK 872 (1071)
Q Consensus 793 dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~v~~s~d~~~la~~~dg~i~vwd~~~~~ 872 (1071)
+|...++.+..... |. ..+ ....+ .....++-.+.++-.+..-++..+.+=++.+ +
T Consensus 388 n~~y~L~~ipk~~~---~~------------~~~---~~~~k-----~tG~~a~fvarNrfavl~k~~~~v~ik~l~N-~ 443 (1202)
T KOG0292|consen 388 NGEYELVQIPKDSD---GV------------SDG---KDVKK-----GTGEGALFVARNRFAVLDKSNEQVVIKNLKN-K 443 (1202)
T ss_pred CCeEEEEEecCccc---cc------------CCc---hhhhc-----CCCCceEEEEecceEEEEecCcceEEecccc-h
Confidence 45555555442110 00 000 00011 2333444444333223333355555555543 2
Q ss_pred EEEEEeCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEccCCeEEEEecCcCCCeeEEEEcCCCCEEEEEeCCCcEEEEE
Q 001477 873 VMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 952 (1071)
Q Consensus 873 ~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~~~v~~l~~s~d~~~l~s~~~d~~v~vWd 952 (1071)
..+.+... ..+..+-+.. .|.+|.. ....|.+||++..+.+..+. ...|.-+.||+|..+++--+.. +|.+.+
T Consensus 444 vtkkl~~~-~~~~~IF~ag-~g~lll~--~~~~v~lfdvQq~~~~~si~--~s~vkyvvws~dm~~vAll~Kh-~i~i~~ 516 (1202)
T KOG0292|consen 444 VTKKLLLP-ESTDDIFYAG-TGNLLLR--SPDSVTLFDVQQKKKVGSIK--VSKVKYVVWSNDMSRVALLSKH-TITIAD 516 (1202)
T ss_pred hhhcccCc-ccccceeecc-CccEEEE--cCCeEEEEEeecceEEEEEe--cCceeEEEEcCccchhhhcccc-eEEEEe
Confidence 22333322 2334455554 5666553 35579999999988887776 3568899999999988877754 577776
Q ss_pred CCCCceeeeeeecCCCCCCCCCCCceEEEEccCCCEEEEEECCeEEEEeC---CCCceeecCCCCCCCCCeeEEEEecCC
Q 001477 953 IDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDS---KLECSRSWSPKDALPAPISSAIYSCDG 1029 (1071)
Q Consensus 953 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~---~~~~~~~~~~~~~h~~~v~~~~~s~dg 1029 (1071)
..-.- +...... -.|.+-+|..+|-+|.+..+. |+ |-+ +...++++ ..++.-.+. .|
T Consensus 517 kkL~l------~~sihEt----iriksgawde~gVfiYtT~nH-ik-Yal~~GD~GIikTL------d~~iyitkv--~g 576 (1202)
T KOG0292|consen 517 KKLEL------LCSIHET----IRIKSGAWDEDGVFIYTTLNH-IK-YALENGDSGIIKTL------DKPIYITKV--KG 576 (1202)
T ss_pred cchhh------eecchhe----eEeeeceeccCceEEEEehhh-hh-hhhccCCcceEEec------ccceEEEEe--eC
Confidence 54311 1110000 335667888888777664321 10 111 11112222 122222222 46
Q ss_pred cEEEEEeCCCeEEEEEcCCCeE
Q 001477 1030 LLVYAGFCDGAIGVFDAETLRF 1051 (1071)
Q Consensus 1030 ~~l~t~~~Dg~i~vwd~~~~~~ 1051 (1071)
+.+++-..|+.+.+.+++.-+.
T Consensus 577 n~V~cl~rd~~~~~~~IDptEy 598 (1202)
T KOG0292|consen 577 NKVFCLNRDGEIECLTIDPTEY 598 (1202)
T ss_pred CEEEEEecCCCeEEEeechHHH
Confidence 6777777788877777765443
No 29
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.4e-36 Score=280.16 Aligned_cols=286 Identities=17% Similarity=0.277 Sum_probs=243.0
Q ss_pred CCeEEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeEEEECCCCCEEEEEeCCCeEEEEEe
Q 001477 358 QQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTY 437 (1071)
Q Consensus 358 g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~la~~~~dg~i~iwd~ 437 (1071)
..-+|++++.|.+|++|...+|.+..+ +.-..+.|+.+...||++.||+++.. .|++||+
T Consensus 9 ~~viLvsA~YDhTIRfWqa~tG~C~rT-------------------iqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~ 68 (311)
T KOG0315|consen 9 DPVILVSAGYDHTIRFWQALTGICSRT-------------------IQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDL 68 (311)
T ss_pred CceEEEeccCcceeeeeehhcCeEEEE-------------------EecCccceeeEEEcCCcchhhhccCC-eeEEEEc
Confidence 335899999999999999999998764 33456789999999999999999654 6999999
Q ss_pred cCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccCCceeEEecCCCCCeEEEEecccCCccEEEEE
Q 001477 438 NPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFST 517 (1071)
Q Consensus 438 ~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~ 517 (1071)
+++..- ...++.+|...|+++.|..||+ .++|||+||+++|||++...+.+.++ |..+|+++..+|+. .-|++|
T Consensus 69 ~S~np~-Pv~t~e~h~kNVtaVgF~~dgr--WMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQ--teLis~ 142 (311)
T KOG0315|consen 69 NSNNPN-PVATFEGHTKNVTAVGFQCDGR--WMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQ--TELISG 142 (311)
T ss_pred cCCCCC-ceeEEeccCCceEEEEEeecCe--EEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCc--ceEEee
Confidence 998764 4558999999999999999999 89999999999999999977766665 77999999999976 789999
Q ss_pred ecCCeEEEEEcCCCceeEEe-cCCCCcEEEEEEccCCCEEEEeccCCCCCCeEEEEeCCCC------ceeEEeecccccc
Q 001477 518 AIDGKIKAWLYDYLGSRVDY-DAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG------AIKRTYSGFRKRS 590 (1071)
Q Consensus 518 ~~d~~i~vwd~~~~~~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~------~~~~~~~~~~~~~ 590 (1071)
..+|.|++||+........+ ......|.+++..|||++++++.. .|..++|++-++ +++..++.|.. -
T Consensus 143 dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nn----kG~cyvW~l~~~~~~s~l~P~~k~~ah~~-~ 217 (311)
T KOG0315|consen 143 DQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANN----KGNCYVWRLLNHQTASELEPVHKFQAHNG-H 217 (311)
T ss_pred cCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecC----CccEEEEEccCCCccccceEhhheecccc-e
Confidence 99999999999987665543 334568999999999999998863 788999998754 35667788877 7
Q ss_pred eeEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCChhhhhhh
Q 001477 591 LGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRM 670 (1071)
Q Consensus 591 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~ 670 (1071)
+..+.+||++++|+++|.|.+++||+.++. ....+...++...+..++||.||++|++|+.|+.+++|++..+ +.++.
T Consensus 218 il~C~lSPd~k~lat~ssdktv~iwn~~~~-~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~-k~v~q 295 (311)
T KOG0315|consen 218 ILRCLLSPDVKYLATCSSDKTVKIWNTDDF-FKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAG-KEVRQ 295 (311)
T ss_pred EEEEEECCCCcEEEeecCCceEEEEecCCc-eeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccC-ceeee
Confidence 888899999999999999999999999988 3333334455568999999999999999999999999999998 66666
Q ss_pred hcCCcc
Q 001477 671 LEGRAM 676 (1071)
Q Consensus 671 ~~~~~~ 676 (1071)
..+|-.
T Consensus 296 y~gh~K 301 (311)
T KOG0315|consen 296 YQGHHK 301 (311)
T ss_pred cCCccc
Confidence 666653
No 30
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=100.00 E-value=1.6e-33 Score=285.27 Aligned_cols=528 Identities=16% Similarity=0.213 Sum_probs=382.3
Q ss_pred CeEEEEeecCCCeEEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeEEEECCCCCEEEEEe
Q 001477 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF 427 (1071)
Q Consensus 348 ~V~~~~fsp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~la~~~ 427 (1071)
.=..+-+.|.|..+...+ +.+.+++.+...+.. +.+|+..|.|++.+||.-.+++|-
T Consensus 67 cR~Nly~lptgE~vyfvA---~V~Vl~n~ee~~Qr~--------------------y~GH~ddikc~~vHPdri~vatGQ 123 (626)
T KOG2106|consen 67 CRNNLYLLPTGELVYFVA---AVGVLYNWEERSQRH--------------------YLGHNDDIKCMAVHPDRIRVATGQ 123 (626)
T ss_pred eeceeEEccCccEEEEec---cEEEEEeehhhhccc--------------------ccCCCCceEEEeecCCceeeccCc
Confidence 334566778887333332 366778876533322 678999999999999999999874
Q ss_pred CCC--------eEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEE--EeCCCcEEEEEccCCceeEEecCCC
Q 001477 428 SKH--------IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVT--CGDDKMIKVWDVVAGRKQYTFEGHE 497 (1071)
Q Consensus 428 ~dg--------~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s--~~~d~~i~iwd~~~~~~~~~~~~h~ 497 (1071)
.-| .+++||..+-..+. .+......|+|++|++-....++.. -+.+..+.+||.+.+......+.-+
T Consensus 124 ~ag~~g~~~~phvriWdsv~L~TL~---V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sn 200 (626)
T KOG2106|consen 124 GAGTSGRPLQPHVRIWDSVTLSTLH---VIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSN 200 (626)
T ss_pred ccccCCCcCCCeeeecccccceeee---eeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceecc
Confidence 333 59999976644443 4555667899999998544323333 3556789999999988887777777
Q ss_pred CCeEEEEecccCCccEEEEEecCCeEEEEEcCCCceeEE---ecC-CCCcEEEEEEccCCCEEEEeccCCCCCCeEEEEe
Q 001477 498 APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD---YDA-PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWN 573 (1071)
Q Consensus 498 ~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~---~~~-~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd 573 (1071)
..|....|+|..+ + ++.....+.+.+|+.+.+..... +.. ....|.|++|.++|..+- + |.+|.|.||+
T Consensus 201 e~v~~a~FHPtd~-n-liit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviT-g----DS~G~i~Iw~ 273 (626)
T KOG2106|consen 201 EVVFLATFHPTDP-N-LIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVIT-G----DSGGNILIWS 273 (626)
T ss_pred ceEEEEEeccCCC-c-EEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEEe-e----cCCceEEEEe
Confidence 8889999999863 4 45555578999999988766543 222 235899999999988664 3 3488899999
Q ss_pred CCCCceeEEeecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCC
Q 001477 574 ESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSD 653 (1071)
Q Consensus 574 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 653 (1071)
..+.+..+....|.+ .|.+++.-.+|..+- |+.|..|..|| ..-+.+...+.+.....+..++-... -|++|+..
T Consensus 274 ~~~~~~~k~~~aH~g-gv~~L~~lr~GtllS-GgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~--di~vGTtr 348 (626)
T KOG2106|consen 274 KGTNRISKQVHAHDG-GVFSLCMLRDGTLLS-GGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGKG--DILVGTTR 348 (626)
T ss_pred CCCceEEeEeeecCC-ceEEEEEecCccEee-cCccceEEecc-ccccccccccCchhcCCeeEEecCCC--cEEEeecc
Confidence 998888887777776 899999999886555 99999999999 55556666666665566776654332 27777776
Q ss_pred CcEEEEEcCChhhhhhhhcCCccccccCCCCCCCCCCccccccCCCCccccccCCCCCCCCCCCCcccccccCCCCcccc
Q 001477 654 NGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRL 733 (1071)
Q Consensus 654 g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 733 (1071)
+.|..=.++++..
T Consensus 349 N~iL~Gt~~~~f~------------------------------------------------------------------- 361 (626)
T KOG2106|consen 349 NFILQGTLENGFT------------------------------------------------------------------- 361 (626)
T ss_pred ceEEEeeecCCce-------------------------------------------------------------------
Confidence 6665433333200
Q ss_pred cccccccccccCccceeccCCCCCcccceeeecCCCcCCCceEEEEEecccchhhhccccceeEEEecccccCCCCCccc
Q 001477 734 VDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKAT 813 (1071)
Q Consensus 734 ~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~g~~~ 813 (1071)
+.. .+|.+....++..|+..++++++.|+.+++|+-..
T Consensus 362 ------------------------------~~v--~gh~delwgla~hps~~q~~T~gqdk~v~lW~~~k---------- 399 (626)
T KOG2106|consen 362 ------------------------------LTV--QGHGDELWGLATHPSKNQLLTCGQDKHVRLWNDHK---------- 399 (626)
T ss_pred ------------------------------EEE--EecccceeeEEcCCChhheeeccCcceEEEccCCc----------
Confidence 000 11556778899999999999999999999996110
Q ss_pred eeecceeccCCCCCccccccCCCCCCCCCeEEEEEecCCcEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCC
Q 001477 814 ANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQ 892 (1071)
Q Consensus 814 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~v~~s~d~~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~ 892 (1071)
.+|.. . - ..++.|+.|+|.| .+|.|. .|...+.|.++...+..-.. +.+++++.|+|
T Consensus 400 -----~~wt~---------~----~-~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp- 457 (626)
T KOG2106|consen 400 -----LEWTK---------I----I-EDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSP- 457 (626)
T ss_pred -----eeEEE---------E----e-cCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcC-
Confidence 12221 1 1 6778999999999 999998 89999999998655554444 88999999999
Q ss_pred CCCEEEEEeCCCeEEEEEccCC-eEEEEe-cCcCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeee--------
Q 001477 893 DNNIIAIGMEDSSVQIYNVRVD-EVKTKL-KGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSR-------- 962 (1071)
Q Consensus 893 ~~~~la~g~~dg~v~vwd~~~~-~~~~~l-~~h~~~v~~l~~s~d~~~l~s~~~d~~v~vWd~~~~~~~~~~-------- 962 (1071)
+|.+||+|+.|+.|+||.+..+ ...... +.|..+|+.+.||+|+++|.+.+.|-.|..|....-+.....
T Consensus 458 ~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~ 537 (626)
T KOG2106|consen 458 DGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATY 537 (626)
T ss_pred CCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeee
Confidence 9999999999999999998754 322222 234488999999999999999999999999943332221110
Q ss_pred -e---ecCCCCCCCCCCCceEEEEccCCCEEEEEE-CCeEEEEeC-CCCceeecCCCCCCCCCeeEEEEecCCcEEEEEe
Q 001477 963 -F---IQAPAGRQSPLVGETKVQFHNDQTHLLVVH-ESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGF 1036 (1071)
Q Consensus 963 -~---~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-d~~i~vwd~-~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~t~~ 1036 (1071)
+ ....-+ .....+..++-+.+.+.+|+++ .|.|++|.. -.+..+......+|++.|++++|+.+...+++.+
T Consensus 538 ~c~lGF~v~g~--s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg 615 (626)
T KOG2106|consen 538 TCTLGFEVFGG--SDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTG 615 (626)
T ss_pred EEEEEEEEecc--cCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecC
Confidence 0 000001 1114566777788899999985 589999998 3333333444567899999999999999999888
Q ss_pred CCCeEEEEEc
Q 001477 1037 CDGAIGVFDA 1046 (1071)
Q Consensus 1037 ~Dg~i~vwd~ 1046 (1071)
.|.+|..|++
T Consensus 616 ~D~Si~qW~l 625 (626)
T KOG2106|consen 616 KDTSIMQWRL 625 (626)
T ss_pred CCceEEEEEe
Confidence 9999999987
No 31
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.4e-34 Score=309.76 Aligned_cols=483 Identities=18% Similarity=0.295 Sum_probs=351.8
Q ss_pred cccCCCCeeEEEECCCCCEEEEEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEE
Q 001477 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1071)
Q Consensus 404 ~~~h~~~v~~~~~spd~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd 483 (1071)
+...+..|..++|+|...++.++-..|.|++||.+-+..+. .+..|.++|+.++|+|++. ++++||+|-.|++|+
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~---rFdeHdGpVRgv~FH~~qp--lFVSGGDDykIkVWn 79 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLID---RFDEHDGPVRGVDFHPTQP--LFVSGGDDYKIKVWN 79 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHh---hhhccCCccceeeecCCCC--eEEecCCccEEEEEe
Confidence 34467789999999999999999999999999999988777 7889999999999999998 999999999999999
Q ss_pred ccCCceeEEecCCCCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCceeEEecCCCCcEEEEEEccCCCEEEEeccCC
Q 001477 484 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK 563 (1071)
Q Consensus 484 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~ 563 (1071)
..+.+++.++.||-+.|..+.|++.. .+++++|.|.+|++|+..+.+++..+++|.+.|.|..|+|....+++++.
T Consensus 80 Yk~rrclftL~GHlDYVRt~~FHhey--PWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSL-- 155 (1202)
T KOG0292|consen 80 YKTRRCLFTLLGHLDYVRTVFFHHEY--PWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASL-- 155 (1202)
T ss_pred cccceehhhhccccceeEEeeccCCC--ceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecc--
Confidence 99999999999999999999999876 79999999999999999999999999999999999999999999999987
Q ss_pred CCCCeEEEEeCCC--------C---------------------ceeEEeecccccceeEEEEeCCCCEEEEEeCCCcEEE
Q 001477 564 EGESHLVEWNESE--------G---------------------AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKF 614 (1071)
Q Consensus 564 d~~~~i~iwd~~~--------~---------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 614 (1071)
|.+|++||+.. + -....+.||.. .|+-++|+|.-..+++|++|..|++
T Consensus 156 --DQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDR-GVNwaAfhpTlpliVSG~DDRqVKl 232 (1202)
T KOG0292|consen 156 --DQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDR-GVNWAAFHPTLPLIVSGADDRQVKL 232 (1202)
T ss_pred --cceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeeccccc-ccceEEecCCcceEEecCCcceeeE
Confidence 77899999842 1 01234667776 8999999999999999999999999
Q ss_pred EeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCChhhhhhhhcCCccccccCCCCCCCCCCcccc
Q 001477 615 WDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTIN 694 (1071)
Q Consensus 615 wd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 694 (1071)
|.+...+.-..=...+|...|.++.|+|..+++++.+.|++|++||+... ..+++++.
T Consensus 233 WrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kR-t~v~tfrr--------------------- 290 (1202)
T KOG0292|consen 233 WRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKR-TSVQTFRR--------------------- 290 (1202)
T ss_pred EEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccc-cceeeeec---------------------
Confidence 99987554333333455668999999999999999999999999998765 33332221
Q ss_pred ccCCCCccccccCCCCCCCCCCCCcccccccCCCCcccccccccccccccCccceeccCCCCCcccceeeecCCCcCCCc
Q 001477 695 ALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASK 774 (1071)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~ 774 (1071)
..++
T Consensus 291 ----------------------------------------------------------------------------endR 294 (1202)
T KOG0292|consen 291 ----------------------------------------------------------------------------ENDR 294 (1202)
T ss_pred ----------------------------------------------------------------------------cCCe
Confidence 2345
Q ss_pred eEEEEEecccchhhhccccceeEEEecccccCCCCCccceeecceeccCCCCCccccccCCCCCCCCCeEEEEEecCCcE
Q 001477 775 VVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSY 854 (1071)
Q Consensus 775 v~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~v~~s~d~~~ 854 (1071)
...++..|..+.+++|. |+-+.||.+.. +.++.++ .+..
T Consensus 295 FW~laahP~lNLfAAgH-DsGm~VFkleR------------------------------------Erpa~~v----~~n~ 333 (1202)
T KOG0292|consen 295 FWILAAHPELNLFAAGH-DSGMIVFKLER------------------------------------ERPAYAV----NGNG 333 (1202)
T ss_pred EEEEEecCCcceeeeec-CCceEEEEEcc------------------------------------cCceEEE----cCCE
Confidence 67778888887555554 44455554321 2333333 2233
Q ss_pred EEEEeCCeEEEEECCCCeE--EEEEeCC---CCCeEEEEEcCCCCCEEEEEeC-CCeEEEEEccCC--------------
Q 001477 855 VMSASGGKVSLFNMMTFKV--MTMFMSP---PPAATFLAFHPQDNNIIAIGME-DSSVQIYNVRVD-------------- 914 (1071)
Q Consensus 855 la~~~dg~i~vwd~~~~~~--~~~~~~~---~~~i~~l~~sp~~~~~la~g~~-dg~v~vwd~~~~-------------- 914 (1071)
|....|..|+-+|+.+.+- +..++.. ..++.++.++|-.+-.+++... .|.-.++.+.+.
T Consensus 334 LfYvkd~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~~~~~~~~~~~~k~t 413 (1202)
T KOG0292|consen 334 LFYVKDRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKDSDGVSDGKDVKKGT 413 (1202)
T ss_pred EEEEccceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeEEEEeccCCCeEEEEEecCcccccCCchhhhcCC
Confidence 3333477788888876433 2333332 2467778888843334443332 233334433211
Q ss_pred -e-E-------EEE---------ecCcCC----------CeeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeecC
Q 001477 915 -E-V-------KTK---------LKGHQN----------RITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQA 966 (1071)
Q Consensus 915 -~-~-------~~~---------l~~h~~----------~v~~l~~s~d~~~l~s~~~d~~v~vWd~~~~~~~~~~~~~~ 966 (1071)
. . ..+ ++.-.+ .+..|-+..+|.+|+. ....|.++|++..+.+.....
T Consensus 414 G~~a~fvarNrfavl~k~~~~v~ik~l~N~vtkkl~~~~~~~~IF~ag~g~lll~--~~~~v~lfdvQq~~~~~si~~-- 489 (1202)
T KOG0292|consen 414 GEGALFVARNRFAVLDKSNEQVVIKNLKNKVTKKLLLPESTDDIFYAGTGNLLLR--SPDSVTLFDVQQKKKVGSIKV-- 489 (1202)
T ss_pred CCceEEEEecceEEEEecCcceEEecccchhhhcccCcccccceeeccCccEEEE--cCCeEEEEEeecceEEEEEec--
Confidence 0 0 000 011111 1223444445554443 334599999998775543322
Q ss_pred CCCCCCCCCCceEEEEccCCCEEEEEECCeEEEEeCCCCceeecCCCCCCCCCeeEEEEecCCcEEEEEe----------
Q 001477 967 PAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGF---------- 1036 (1071)
Q Consensus 967 ~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~t~~---------- 1036 (1071)
..+.-+.||+|+.++|.-+...|.+.+.+.+.+..+.. .-+|.+-+|..||-+|++..
T Consensus 490 --------s~vkyvvws~dm~~vAll~Kh~i~i~~kkL~l~~sihE----tiriksgawde~gVfiYtT~nHikYal~~G 557 (1202)
T KOG0292|consen 490 --------SKVKYVVWSNDMSRVALLSKHTITIADKKLELLCSIHE----TIRIKSGAWDEDGVFIYTTLNHIKYALENG 557 (1202)
T ss_pred --------CceeEEEEcCccchhhhcccceEEEEecchhheecchh----eeEeeeceeccCceEEEEehhhhhhhhccC
Confidence 45788999999999998888899999986666655432 45678888988888777644
Q ss_pred -------CCCeEEEEEcCCCeEEE
Q 001477 1037 -------CDGAIGVFDAETLRFRC 1053 (1071)
Q Consensus 1037 -------~Dg~i~vwd~~~~~~~~ 1053 (1071)
.|..|++..++.++..+
T Consensus 558 D~GIikTLd~~iyitkv~gn~V~c 581 (1202)
T KOG0292|consen 558 DSGIIKTLDKPIYITKVKGNKVFC 581 (1202)
T ss_pred CcceEEecccceEEEEeeCCEEEE
Confidence 24556666666555444
No 32
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=4.7e-35 Score=285.59 Aligned_cols=339 Identities=18% Similarity=0.277 Sum_probs=289.9
Q ss_pred EeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccCCceeEEecCCCCCeEEEEecccCCccEEEEEecCCeEEEEE
Q 001477 448 EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWL 527 (1071)
Q Consensus 448 ~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd 527 (1071)
.|..|..+|.+++.+|+.+ +++||+.|....+|++.+|.....+.+|...|+++.|+.+ |.+|++|+.+|.|++|.
T Consensus 59 tF~~H~~svFavsl~P~~~--l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fshd--gtlLATGdmsG~v~v~~ 134 (399)
T KOG0296|consen 59 TFDKHTDSVFAVSLHPNNN--LVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHD--GTLLATGDMSGKVLVFK 134 (399)
T ss_pred ehhhcCCceEEEEeCCCCc--eEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccC--ceEEEecCCCccEEEEE
Confidence 6789999999999999777 8999999999999999999999999999999999999864 49999999999999999
Q ss_pred cCCCceeEEecCCCCcEEEEEEccCCCEEEEeccCCCCCCeEEEEeCCCCceeEEeecccccceeEEEEeCCCCEEEEEe
Q 001477 528 YDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG 607 (1071)
Q Consensus 528 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 607 (1071)
..++.....+......+.-+.|+|.+..|++|+. |+.+.+|.+.++...+.+.+|.. ++++-.|.|+|++++++.
T Consensus 135 ~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~----DGsvWmw~ip~~~~~kv~~Gh~~-~ct~G~f~pdGKr~~tgy 209 (399)
T KOG0296|consen 135 VSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGST----DGSVWMWQIPSQALCKVMSGHNS-PCTCGEFIPDGKRILTGY 209 (399)
T ss_pred cccCceEEEeecccCceEEEEecccccEEEeecC----CCcEEEEECCCcceeeEecCCCC-CcccccccCCCceEEEEe
Confidence 9999999988878889999999999999999875 88899999999888999999887 899999999999999999
Q ss_pred CCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCChhhhhhhhcCCccccccCCCCCCC
Q 001477 608 DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPIS 687 (1071)
Q Consensus 608 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (1071)
.||+|++|++.++.++..+....+ ....++.++..+..++.|+.++.+++-+..++ +.+....
T Consensus 210 ~dgti~~Wn~ktg~p~~~~~~~e~-~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sg-KVv~~~n--------------- 272 (399)
T KOG0296|consen 210 DDGTIIVWNPKTGQPLHKITQAEG-LELPCISLNLAGSTLTKGNSEGVACGVNNGSG-KVVNCNN--------------- 272 (399)
T ss_pred cCceEEEEecCCCceeEEeccccc-CcCCccccccccceeEeccCCccEEEEccccc-eEEEecC---------------
Confidence 999999999999999999876554 36788999999999999999999988776555 1110000
Q ss_pred CCCccccccCCCCccccccCCCCCCCCCCCCcccccccCCCCcccccccccccccccCccceeccCCCCCcccceeeecC
Q 001477 688 SKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLP 767 (1071)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~ 767 (1071)
T Consensus 273 -------------------------------------------------------------------------------- 272 (399)
T KOG0296|consen 273 -------------------------------------------------------------------------------- 272 (399)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcCCCceEEEEEecccchhhhccccceeEEEecccccCCCCCccceeecceeccCCCCCccccccCCCCCCCCCeEEEE
Q 001477 768 DSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIA 847 (1071)
Q Consensus 768 ~~~~~~~v~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~v~ 847 (1071)
+.+..+ .....|....|.++.
T Consensus 273 --------------~~~~~l---------------------------------------------~~~~e~~~esve~~~ 293 (399)
T KOG0296|consen 273 --------------GTVPEL---------------------------------------------KPSQEELDESVESIP 293 (399)
T ss_pred --------------CCCccc---------------------------------------------cccchhhhhhhhhcc
Confidence 000000 000001033455555
Q ss_pred EecCCcEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEccCCeEEEEecCcCCC
Q 001477 848 LSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNR 926 (1071)
Q Consensus 848 ~s~d~~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~~~ 926 (1071)
++..-.+.|+|+ ||+|.|||+...++.+.+. |...|+.+.|-+ ..+|++++.||.|+.||.++|+++.++.||...
T Consensus 294 ~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w~~--t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~ 370 (399)
T KOG0296|consen 294 SSSKLPLAACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLKWLN--TDYLLTACANGKVRQWDARTGQLKFTYTGHQMG 370 (399)
T ss_pred cccccchhhcccccceEEEEecccchhheecc-CCCceEEEEEcC--cchheeeccCceEEeeeccccceEEEEecCchh
Confidence 666777889999 9999999999877766665 788899999987 468899999999999999999999999999999
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEECC
Q 001477 927 ITGLAFSPTLNALVSSGADAQLCMWSID 954 (1071)
Q Consensus 927 v~~l~~s~d~~~l~s~~~d~~v~vWd~~ 954 (1071)
|.+++++|+.++++|+|.|++.+|+++.
T Consensus 371 Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 371 ILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred eeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 9999999999999999999999999875
No 33
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.6e-36 Score=293.02 Aligned_cols=310 Identities=19% Similarity=0.290 Sum_probs=272.1
Q ss_pred eccCCCCCCccccCCccceeeEEeecCCCCeEEEEeecCCCeEEEEEcCCCeEEEEecCCCcccccccceeecccccccc
Q 001477 319 SFAGVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMP 398 (1071)
Q Consensus 319 ~~s~~~~~~~~~~~d~~~~~~~~~~~h~~~V~~~~fsp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~ 398 (1071)
...|.+..-.-..+-..+....+...|..+|+.+-|+|+-. +.++++.|++|++||..+|+....
T Consensus 81 ~g~pt~~~~~~~~wipRp~l~~~l~g~r~~vt~v~~hp~~~-~v~~as~d~tikv~D~~tg~~e~~-------------- 145 (406)
T KOG0295|consen 81 AGDPTGSKRTPALWIPRPNLVQKLAGHRSSVTRVIFHPSEA-LVVSASEDATIKVFDTETGELERS-------------- 145 (406)
T ss_pred cCCCCcCccChhhcCCCCCchhhhhccccceeeeeeccCce-EEEEecCCceEEEEEccchhhhhh--------------
Confidence 34444443333333334444555555899999999999996 889999999999999999988654
Q ss_pred hhhhhcccCCCCeeEEEECCCCCEEEEEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCc
Q 001477 399 LQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKM 478 (1071)
Q Consensus 399 ~~~~~~~~h~~~v~~~~~spd~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~ 478 (1071)
++||.+.|..++|+..|++||+++.|-.+.+||..+. ....+.+.+|...|.+++|-|.|. ++++++.|.+
T Consensus 146 -----LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~--~~c~ks~~gh~h~vS~V~f~P~gd--~ilS~srD~t 216 (406)
T KOG0295|consen 146 -----LRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTF--FRCIKSLIGHEHGVSSVFFLPLGD--HILSCSRDNT 216 (406)
T ss_pred -----hhccccceeEEEEecCccEEEecCCccchhheeHHHH--HHHHHHhcCcccceeeEEEEecCC--eeeecccccc
Confidence 8899999999999999999999999999999999873 233336779999999999999998 8999999999
Q ss_pred EEEEEccCCceeEEecCCCCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCceeEEecCCCCcEEEEEEccC------
Q 001477 479 IKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSAD------ 552 (1071)
Q Consensus 479 i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~------ 552 (1071)
|+.|++.+|-++++|.+|...|..++.+ .||.++++++.|.++++|-+.+.++...+..|..+|.+++|.|.
T Consensus 217 ik~We~~tg~cv~t~~~h~ewvr~v~v~--~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i 294 (406)
T KOG0295|consen 217 IKAWECDTGYCVKTFPGHSEWVRMVRVN--QDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSI 294 (406)
T ss_pred eeEEecccceeEEeccCchHhEEEEEec--CCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcch
Confidence 9999999999999999999999999876 46699999999999999999999999999999999999999774
Q ss_pred ---------CCEEEEeccCCCCCCeEEEEeCCCCceeEEeecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCCcee
Q 001477 553 ---------GTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNML 623 (1071)
Q Consensus 553 ---------~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 623 (1071)
+.++.+++. |++|++||+.++.++.++.+|.. .|..++|+|.|+||+++.+|+++++||++++++.
T Consensus 295 ~~at~~~~~~~~l~s~Sr----DktIk~wdv~tg~cL~tL~ghdn-wVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cm 369 (406)
T KOG0295|consen 295 SEATGSTNGGQVLGSGSR----DKTIKIWDVSTGMCLFTLVGHDN-WVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCM 369 (406)
T ss_pred hhccCCCCCccEEEeecc----cceEEEEeccCCeEEEEEecccc-eeeeeEEcCCCeEEEEEecCCcEEEEEeccceee
Confidence 236666654 88899999999999999999988 9999999999999999999999999999999999
Q ss_pred EEEecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEc
Q 001477 624 TTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (1071)
Q Consensus 624 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~ 661 (1071)
..++.|.+ .|+++.|+.+..++++|+-|.++++|..
T Consensus 370 k~~~ah~h--fvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 370 KTLEAHEH--FVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred eccCCCcc--eeEEEecCCCCceEEeccccceeeeeec
Confidence 99997776 6899999999999999999999999974
No 34
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=5.5e-35 Score=274.90 Aligned_cols=253 Identities=17% Similarity=0.254 Sum_probs=218.6
Q ss_pred cccCCCCeeEEEECCC-CCEEEEEeCCCeEEEEEecCCCcc--ceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEE
Q 001477 404 LNDAAISVNRCVWGPD-GLMLGVAFSKHIVHLYTYNPTGEL--RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIK 480 (1071)
Q Consensus 404 ~~~h~~~v~~~~~spd-~~~la~~~~dg~i~iwd~~~~~~~--~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~ 480 (1071)
+.+|++.|+.++..+. .+.+.+++.|.++.+|++...... ...+.+.||...|..++.++||+ +.++++.|++++
T Consensus 11 l~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~--~alS~swD~~lr 88 (315)
T KOG0279|consen 11 LEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGN--FALSASWDGTLR 88 (315)
T ss_pred ecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCc--eEEeccccceEE
Confidence 7899999999999986 568889999999999998764221 12347889999999999999999 899999999999
Q ss_pred EEEccCCceeEEecCCCCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCceeEEecCC-CCcEEEEEEccC--CCEEE
Q 001477 481 VWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP-GNWCTMMAYSAD--GTRLF 557 (1071)
Q Consensus 481 iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~-~~~i~~~~~s~~--~~~l~ 557 (1071)
+||+.+|+..+.|.+|...|.+++|+++. ..+++|+.|++|++|+.-........... ..+|.|++|+|+ ..+++
T Consensus 89 lWDl~~g~~t~~f~GH~~dVlsva~s~dn--~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Iv 166 (315)
T KOG0279|consen 89 LWDLATGESTRRFVGHTKDVLSVAFSTDN--RQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIV 166 (315)
T ss_pred EEEecCCcEEEEEEecCCceEEEEecCCC--ceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEE
Confidence 99999999999999999999999999876 79999999999999998744333333333 779999999998 67888
Q ss_pred EeccCCCCCCeEEEEeCCCCceeEEeecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcce
Q 001477 558 SCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPR 637 (1071)
Q Consensus 558 ~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 637 (1071)
+++. |+++++||+++-+....+.+|.. .++.++++|||...++|+.||.+.+||++.++.+..+.. ...|.+
T Consensus 167 s~s~----DktvKvWnl~~~~l~~~~~gh~~-~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a---~~~v~s 238 (315)
T KOG0279|consen 167 SASW----DKTVKVWNLRNCQLRTTFIGHSG-YVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEA---FDIVNS 238 (315)
T ss_pred EccC----CceEEEEccCCcchhhccccccc-cEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccC---CCeEee
Confidence 8875 88899999999999999999988 899999999999999999999999999999999888854 357999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEcCChhhhhhh
Q 001477 638 LRFNKEGSLLAVTTSDNGIKILANSDGVRLLRM 670 (1071)
Q Consensus 638 ~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~ 670 (1071)
++|+|+...|+.+.. ..|+|||+.++ .++..
T Consensus 239 l~fspnrywL~~at~-~sIkIwdl~~~-~~v~~ 269 (315)
T KOG0279|consen 239 LCFSPNRYWLCAATA-TSIKIWDLESK-AVVEE 269 (315)
T ss_pred EEecCCceeEeeccC-CceEEEeccch-hhhhh
Confidence 999998877776654 46999999887 44433
No 35
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.2e-36 Score=300.35 Aligned_cols=284 Identities=20% Similarity=0.320 Sum_probs=250.7
Q ss_pred CCCCeEEEEeecCCCeEEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeEEEECCCCCEEE
Q 001477 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1071)
Q Consensus 345 h~~~V~~~~fsp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~la 424 (1071)
-..+|..+.|.|+|++ |++|+..|.+.+|+..+-. | ..++..|..+|.++.||++|.+++
T Consensus 95 vkc~V~~v~WtPeGRR-Lltgs~SGEFtLWNg~~fn------F-------------EtilQaHDs~Vr~m~ws~~g~wmi 154 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRR-LLTGSQSGEFTLWNGTSFN------F-------------ETILQAHDSPVRTMKWSHNGTWMI 154 (464)
T ss_pred cccceeeEEEcCCCce-eEeecccccEEEecCceee------H-------------HHHhhhhcccceeEEEccCCCEEE
Confidence 4568999999999996 6789999999999963311 1 223678999999999999999999
Q ss_pred EEeCCCeEEEEEecCCCccceeeEeecc-cCCEEEEEEecCCCceEEEEEeCCCcEEEEEccCCceeEEecCCCCCeEEE
Q 001477 425 VAFSKHIVHLYTYNPTGELRQHLEIDAH-VGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSV 503 (1071)
Q Consensus 425 ~~~~dg~i~iwd~~~~~~~~~~~~~~~h-~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i 503 (1071)
+|+.+|.|++|+.+-.... .+.+| ...|++++|+|+.. .++++++||+|+|||....+....+.||.-.|.++
T Consensus 155 SgD~gG~iKyWqpnmnnVk----~~~ahh~eaIRdlafSpnDs--kF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksv 228 (464)
T KOG0284|consen 155 SGDKGGMIKYWQPNMNNVK----IIQAHHAEAIRDLAFSPNDS--KFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSV 228 (464)
T ss_pred EcCCCceEEecccchhhhH----HhhHhhhhhhheeccCCCCc--eeEEecCCCeEEEEeccCCchhheeccCCCCccee
Confidence 9999999999998764332 34444 48999999999887 79999999999999999999988999999999999
Q ss_pred EecccCCccEEEEEecCCeEEEEEcCCCceeEEecCCCCcEEEEEEccCCCEEEEeccCCCCCCeEEEEeCCCCceeEEe
Q 001477 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTY 583 (1071)
Q Consensus 504 ~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~ 583 (1071)
.|+|.. ..++++|.|+.|++||.+++.++..+..|...|..+.|+|++++|++++. |..++++|+++.+.+.++
T Consensus 229 dWHP~k--gLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~sk----D~~~kv~DiR~mkEl~~~ 302 (464)
T KOG0284|consen 229 DWHPTK--GLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSK----DQSCKVFDIRTMKELFTY 302 (464)
T ss_pred ccCCcc--ceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccC----CceEEEEehhHhHHHHHh
Confidence 999987 79999999999999999999999999999999999999999999999985 778999999999999999
Q ss_pred ecccccceeEEEEeCCC-CEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcC
Q 001477 584 SGFRKRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANS 662 (1071)
Q Consensus 584 ~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~ 662 (1071)
++|.. .+.++.|+|-. ..|.+|+.||.|..|.+...+++..+.. .+...|.+++|+|-|.+|++|+.|.++++|.-.
T Consensus 303 r~Hkk-dv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~-AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 303 RGHKK-DVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPP-AHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred hcchh-hheeeccccccccceeeccCCCceEEEeccccccccCCCc-ccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 99998 89999999965 5666799999999999997777766643 445689999999999999999999999999753
No 36
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=8.4e-35 Score=268.49 Aligned_cols=295 Identities=14% Similarity=0.234 Sum_probs=251.7
Q ss_pred cEEEEEecCCeEEEEEcCCCceeEEecCCCCcEEEEEEccCCCEEEEeccCCCCCCeEEEEeCCCCc--eeEEeeccccc
Q 001477 512 QFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA--IKRTYSGFRKR 589 (1071)
Q Consensus 512 ~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~--~~~~~~~~~~~ 589 (1071)
-+|++++.|.+||+|...++.+...+...++.|+.+...||++.|++++ ...|++||++++. ++.+|.+|.+
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~-----~qhvRlyD~~S~np~Pv~t~e~h~k- 84 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAG-----NQHVRLYDLNSNNPNPVATFEGHTK- 84 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhcc-----CCeeEEEEccCCCCCceeEEeccCC-
Confidence 6899999999999999999999999999999999999999999999986 5569999999765 6889999987
Q ss_pred ceeEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCChhhhhh
Q 001477 590 SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLR 669 (1071)
Q Consensus 590 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~ 669 (1071)
.|.++.|..+|+.+++||+||+++|||++.......++. ..+|+++..+|+...|++|..+|.|++||+.+. .+..
T Consensus 85 NVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~---~spVn~vvlhpnQteLis~dqsg~irvWDl~~~-~c~~ 160 (311)
T KOG0315|consen 85 NVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQH---NSPVNTVVLHPNQTELISGDQSGNIRVWDLGEN-SCTH 160 (311)
T ss_pred ceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccC---CCCcceEEecCCcceEEeecCCCcEEEEEccCC-cccc
Confidence 899999999999999999999999999998665555543 358999999999999999999999999999765 1111
Q ss_pred hhcCCccccccCCCCCCCCCCccccccCCCCccccccCCCCCCCCCCCCcccccccCCCCcccccccccccccccCccce
Q 001477 670 MLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKS 749 (1071)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 749 (1071)
.+
T Consensus 161 ~l------------------------------------------------------------------------------ 162 (311)
T KOG0315|consen 161 EL------------------------------------------------------------------------------ 162 (311)
T ss_pred cc------------------------------------------------------------------------------
Confidence 11
Q ss_pred eccCCCCCcccceeeecCCCcCCCceEEEEEecccchhhhccccceeEEEecccccCCCCCccceeecceeccCCCCCcc
Q 001477 750 WRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLM 829 (1071)
Q Consensus 750 w~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 829 (1071)
.|+ ....|+++...|||..++++...|..++|++...... +....
T Consensus 163 ----------------iPe--~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~-----------------s~l~P 207 (311)
T KOG0315|consen 163 ----------------IPE--DDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTA-----------------SELEP 207 (311)
T ss_pred ----------------CCC--CCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCcc-----------------ccceE
Confidence 111 2356889999999999999999999999987653221 11011
Q ss_pred ccccCCCCCCCCCeEEEEEecCCcEEEEEe-CCeEEEEECCCC-eEEEEEeCCCCCeEEEEEcCCCCCEEEEEeCCCeEE
Q 001477 830 TNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTF-KVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQ 907 (1071)
Q Consensus 830 ~~~~~~~~h~~~~v~~v~~s~d~~~la~~~-dg~i~vwd~~~~-~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~ 907 (1071)
...++. | .+.+....+|||+++||+++ |.+++||+.++. +.-..+.+|..-+..++||. |+++|++|+.|+.++
T Consensus 208 ~~k~~a--h-~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~-dg~YlvTassd~~~r 283 (311)
T KOG0315|consen 208 VHKFQA--H-NGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSA-DGEYLVTASSDHTAR 283 (311)
T ss_pred hhheec--c-cceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeecc-CccEEEecCCCCcee
Confidence 111333 7 88899999999999999999 999999999988 77778899999999999999 999999999999999
Q ss_pred EEEccCCeEEEEecCcCCCeeEEEEc
Q 001477 908 IYNVRVDEVKTKLKGHQNRITGLAFS 933 (1071)
Q Consensus 908 vwd~~~~~~~~~l~~h~~~v~~l~~s 933 (1071)
+|++..++.+....+|-....|++..
T Consensus 284 lW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 284 LWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred ecccccCceeeecCCcccccEEEEee
Confidence 99999999999999999988888764
No 37
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=7.5e-35 Score=282.40 Aligned_cols=294 Identities=18% Similarity=0.274 Sum_probs=264.7
Q ss_pred ceeeEEeec-CCCCeEEEEeecCCCeEEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeEE
Q 001477 336 TKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRC 414 (1071)
Q Consensus 336 ~~~~~~~~~-h~~~V~~~~fsp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~ 414 (1071)
+.+..+.+. |.+.|.|+++.|.++ .+++|+.|++|.|||+.+|+...+ +.||-..|..+
T Consensus 140 pwKl~rVi~gHlgWVr~vavdP~n~-wf~tgs~DrtikIwDlatg~Lklt-------------------ltGhi~~vr~v 199 (460)
T KOG0285|consen 140 PWKLYRVISGHLGWVRSVAVDPGNE-WFATGSADRTIKIWDLATGQLKLT-------------------LTGHIETVRGV 199 (460)
T ss_pred cceehhhhhhccceEEEEeeCCCce-eEEecCCCceeEEEEcccCeEEEe-------------------ecchhheeeee
Confidence 455666677 899999999999986 789999999999999999987765 78999999999
Q ss_pred EECCCCCEEEEEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccCCceeEEec
Q 001477 415 VWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE 494 (1071)
Q Consensus 415 ~~spd~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 494 (1071)
++|+--.|+++++.|+.|+-||++.++.++ .+.||-..|.|++..|.-+ .|+||+.|.++++||+++...+..+.
T Consensus 200 avS~rHpYlFs~gedk~VKCwDLe~nkvIR---~YhGHlS~V~~L~lhPTld--vl~t~grDst~RvWDiRtr~~V~~l~ 274 (460)
T KOG0285|consen 200 AVSKRHPYLFSAGEDKQVKCWDLEYNKVIR---HYHGHLSGVYCLDLHPTLD--VLVTGGRDSTIRVWDIRTRASVHVLS 274 (460)
T ss_pred eecccCceEEEecCCCeeEEEechhhhhHH---HhccccceeEEEeccccce--eEEecCCcceEEEeeecccceEEEec
Confidence 999999999999999999999999999888 7789999999999999888 89999999999999999999999999
Q ss_pred CCCCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCceeEEecCCCCcEEEEEEccCCCEEEEeccCCCCCCeEEEEeC
Q 001477 495 GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNE 574 (1071)
Q Consensus 495 ~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~ 574 (1071)
||..+|.++.+.|.. ..+++||.|++|++||++.++....+..|...+.+++.+|....+++++. ..|..|++
T Consensus 275 GH~~~V~~V~~~~~d--pqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~-----dnik~w~~ 347 (460)
T KOG0285|consen 275 GHTNPVASVMCQPTD--PQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASP-----DNIKQWKL 347 (460)
T ss_pred CCCCcceeEEeecCC--CceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCC-----ccceeccC
Confidence 999999999998865 67999999999999999999999999999999999999999999999874 33999999
Q ss_pred CCCceeEEeecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEe---cC---CCCCCcceEEEcCCCCEEE
Q 001477 575 SEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVD---AD---GGLPASPRLRFNKEGSLLA 648 (1071)
Q Consensus 575 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~---~~~~~v~~~~~s~~~~~l~ 648 (1071)
..|..+..+.+|.. .|++++.+.|+ ++++|+++|.+.+||.+++...+..+ .. .....|.+.+|...|..|+
T Consensus 348 p~g~f~~nlsgh~~-iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rli 425 (460)
T KOG0285|consen 348 PEGEFLQNLSGHNA-IINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLI 425 (460)
T ss_pred Cccchhhccccccc-eeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEE
Confidence 99999999999887 89999988775 88899999999999999987665542 11 1234678999999999999
Q ss_pred EEeCCCcEEEEEcCC
Q 001477 649 VTTSDNGIKILANSD 663 (1071)
Q Consensus 649 ~~~~dg~v~iw~~~~ 663 (1071)
+|..|.+|++|.-..
T Consensus 426 t~eadKtIk~~keDe 440 (460)
T KOG0285|consen 426 TGEADKTIKMYKEDE 440 (460)
T ss_pred eccCCcceEEEeccc
Confidence 999999999997543
No 38
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=3.3e-34 Score=288.55 Aligned_cols=281 Identities=18% Similarity=0.274 Sum_probs=254.6
Q ss_pred CCCCeEEEEeecCCCeEEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeEEEECCCCCEEE
Q 001477 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1071)
Q Consensus 345 h~~~V~~~~fsp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~la 424 (1071)
....|++++|+.+|. +||+|+.||.++||+...+. +.. +..|+++|.++.|+.+|.||+
T Consensus 234 ~nkdVT~L~Wn~~G~-~LatG~~~G~~riw~~~G~l-~~t-------------------l~~HkgPI~slKWnk~G~yil 292 (524)
T KOG0273|consen 234 SNKDVTSLDWNNDGT-LLATGSEDGEARIWNKDGNL-IST-------------------LGQHKGPIFSLKWNKKGTYIL 292 (524)
T ss_pred ccCCcceEEecCCCC-eEEEeecCcEEEEEecCchh-hhh-------------------hhccCCceEEEEEcCCCCEEE
Confidence 356899999999997 89999999999999976543 332 678999999999999999999
Q ss_pred EEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccCCceeEEecCCCCCeEEEE
Q 001477 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 504 (1071)
Q Consensus 425 ~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~ 504 (1071)
+++.|+++.+||..++.... .+.-|..+-.++.|-.+.. +++++.|+.|+++-+...+++.++.+|.++|.++.
T Consensus 293 S~~vD~ttilwd~~~g~~~q---~f~~~s~~~lDVdW~~~~~---F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk 366 (524)
T KOG0273|consen 293 SGGVDGTTILWDAHTGTVKQ---QFEFHSAPALDVDWQSNDE---FATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALK 366 (524)
T ss_pred eccCCccEEEEeccCceEEE---eeeeccCCccceEEecCce---EeecCCCceEEEEEecCCCcceeeecccCceEEEE
Confidence 99999999999999987655 5667888878899987665 89999999999999999999999999999999999
Q ss_pred ecccCCccEEEEEecCCeEEEEEcCCCceeEEecCCCCcEEEEEEccCC---------CEEEEeccCCCCCCeEEEEeCC
Q 001477 505 PHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADG---------TRLFSCGTSKEGESHLVEWNES 575 (1071)
Q Consensus 505 ~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~---------~~l~~~~~~~d~~~~i~iwd~~ 575 (1071)
|+|.+ .+|++++.|+++++|.+........+..|...|..+.|+|+| ..+++++. +++|++||+.
T Consensus 367 ~n~tg--~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~----dstV~lwdv~ 440 (524)
T KOG0273|consen 367 WNPTG--SLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASF----DSTVKLWDVE 440 (524)
T ss_pred ECCCC--ceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeec----CCeEEEEEcc
Confidence 99866 899999999999999999888888999999999999999965 35777765 8899999999
Q ss_pred CCceeEEeecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCc
Q 001477 576 EGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNG 655 (1071)
Q Consensus 576 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 655 (1071)
.+.++.+|..|.. +|.+++|+|+|.++++|+.||.|.+|+.++++.++.....+ .|..++|+.+|..|..+..||.
T Consensus 441 ~gv~i~~f~kH~~-pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~---~Ifel~Wn~~G~kl~~~~sd~~ 516 (524)
T KOG0273|consen 441 SGVPIHTLMKHQE-PVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTG---GIFELCWNAAGDKLGACASDGS 516 (524)
T ss_pred CCceeEeeccCCC-ceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCC---eEEEEEEcCCCCEEEEEecCCC
Confidence 9999999999988 99999999999999999999999999999999999987654 5899999999999999999999
Q ss_pred EEEEEcC
Q 001477 656 IKILANS 662 (1071)
Q Consensus 656 v~iw~~~ 662 (1071)
+++.|+.
T Consensus 517 vcvldlr 523 (524)
T KOG0273|consen 517 VCVLDLR 523 (524)
T ss_pred ceEEEec
Confidence 9999874
No 39
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=2.3e-33 Score=273.88 Aligned_cols=329 Identities=12% Similarity=0.183 Sum_probs=273.2
Q ss_pred cccCCCCeeEEEECCCCCEEEEEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEE
Q 001477 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1071)
Q Consensus 404 ~~~h~~~v~~~~~spd~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd 483 (1071)
|..|++.|.+++.+|+.+++|||+.|....+|++.++.... .+.+|...|+++.|+.||. +||||+-+|.|+||.
T Consensus 60 F~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~---eltgHKDSVt~~~Fshdgt--lLATGdmsG~v~v~~ 134 (399)
T KOG0296|consen 60 FDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAG---ELTGHKDSVTCCSFSHDGT--LLATGDMSGKVLVFK 134 (399)
T ss_pred hhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCccee---EecCCCCceEEEEEccCce--EEEecCCCccEEEEE
Confidence 66799999999999999999999999999999999998555 7889999999999999999 999999999999999
Q ss_pred ccCCceeEEecCCCCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCceeEEecCCCCcEEEEEEccCCCEEEEeccCC
Q 001477 484 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK 563 (1071)
Q Consensus 484 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~ 563 (1071)
..++.....+...-..+.-+.|+|.. .+|+.|+.||.+.+|.+.+......+.+|..++++=.|.|+|+.++++..
T Consensus 135 ~stg~~~~~~~~e~~dieWl~WHp~a--~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~-- 210 (399)
T KOG0296|consen 135 VSTGGEQWKLDQEVEDIEWLKWHPRA--HILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYD-- 210 (399)
T ss_pred cccCceEEEeecccCceEEEEecccc--cEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEec--
Confidence 99999888887677788889999965 89999999999999999998888899999999999999999999999975
Q ss_pred CCCCeEEEEeCCCCceeEEeecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCC------CCCCcce
Q 001477 564 EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG------GLPASPR 637 (1071)
Q Consensus 564 d~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------~~~~v~~ 637 (1071)
+++|++||..++.++..+.+.......++.++..+..++.|+.++.+++-+..+++.+....... ....+.+
T Consensus 211 --dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~es 288 (399)
T KOG0296|consen 211 --DGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDES 288 (399)
T ss_pred --CceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhh
Confidence 88999999999999999887666678889999999999999999999999888888776665210 0011112
Q ss_pred ---EEEcCCCCEEEEEeCCCcEEEEEcCChhhhhhhhcCCccccccCCCCCCCCCCccccccCCCCccccccCCCCCCCC
Q 001477 638 ---LRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPD 714 (1071)
Q Consensus 638 ---~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 714 (1071)
+.++..-.+.|+|+-
T Consensus 289 ve~~~~ss~lpL~A~G~v-------------------------------------------------------------- 306 (399)
T KOG0296|consen 289 VESIPSSSKLPLAACGSV-------------------------------------------------------------- 306 (399)
T ss_pred hhhcccccccchhhcccc--------------------------------------------------------------
Confidence 222222333444444
Q ss_pred CCCCcccccccCCCCcccccccccccccccCccceeccCCCCCcccceeeecCCCcCCCceEEEEEecccchhhhccccc
Q 001477 715 RGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNA 794 (1071)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~~~~~dg 794 (1071)
||
T Consensus 307 ------------------------------------------------------------------------------dG 308 (399)
T KOG0296|consen 307 ------------------------------------------------------------------------------DG 308 (399)
T ss_pred ------------------------------------------------------------------------------cc
Confidence 44
Q ss_pred eeEEEecccccCCCCCccceeecceeccCCCCCccccccCCCCCCCCCeEEEEEecCCcEEEEEe-CCeEEEEECCCCeE
Q 001477 795 VHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKV 873 (1071)
Q Consensus 795 ~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~v~~s~d~~~la~~~-dg~i~vwd~~~~~~ 873 (1071)
+|.|||+....+ .. .. .| ...|+.+.|-+ ..+|++++ +|.|+.||.++|++
T Consensus 309 ~i~iyD~a~~~~----------------------R~-~c---~h-e~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l 360 (399)
T KOG0296|consen 309 TIAIYDLAASTL----------------------RH-IC---EH-EDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQL 360 (399)
T ss_pred eEEEEecccchh----------------------he-ec---cC-CCceEEEEEcC-cchheeeccCceEEeeeccccce
Confidence 444444322110 00 01 15 77788888888 56666666 99999999999999
Q ss_pred EEEEeCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcc
Q 001477 874 MTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVR 912 (1071)
Q Consensus 874 ~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~ 912 (1071)
+.++.+|...|.+++++| +++++++++.|++.+||+..
T Consensus 361 ~~~y~GH~~~Il~f~ls~-~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 361 KFTYTGHQMGILDFALSP-QKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred EEEEecCchheeEEEEcC-CCcEEEEecCCCeEEEEecC
Confidence 999999999999999999 89999999999999999864
No 40
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=4.4e-34 Score=271.56 Aligned_cols=283 Identities=18% Similarity=0.249 Sum_probs=248.5
Q ss_pred CCCCeEEEEeecCCCeEEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeEEEECCCCCEEE
Q 001477 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1071)
Q Consensus 345 h~~~V~~~~fsp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~la 424 (1071)
|++.|..+.|+|+|. ++|+|+.|..|.+|++.....-. ..+++|+++|..+.|.+|++.|+
T Consensus 46 h~geI~~~~F~P~gs-~~aSgG~Dr~I~LWnv~gdceN~------------------~~lkgHsgAVM~l~~~~d~s~i~ 106 (338)
T KOG0265|consen 46 HKGEIYTIKFHPDGS-CFASGGSDRAIVLWNVYGDCENF------------------WVLKGHSGAVMELHGMRDGSHIL 106 (338)
T ss_pred CcceEEEEEECCCCC-eEeecCCcceEEEEeccccccce------------------eeeccccceeEeeeeccCCCEEE
Confidence 899999999999997 89999999999999975432111 12679999999999999999999
Q ss_pred EEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccCCceeEEecCCCCCeEEEE
Q 001477 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 504 (1071)
Q Consensus 425 ~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~ 504 (1071)
+++.|.+++.||+++|+..+ .+++|..-|+++.-+.-|.. ++.+++.|+++++||+++...++++. ....++++.
T Consensus 107 S~gtDk~v~~wD~~tG~~~r---k~k~h~~~vNs~~p~rrg~~-lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~ 181 (338)
T KOG0265|consen 107 SCGTDKTVRGWDAETGKRIR---KHKGHTSFVNSLDPSRRGPQ-LVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVG 181 (338)
T ss_pred EecCCceEEEEecccceeee---hhccccceeeecCccccCCe-EEEecCCCceEEEEeecccchhhccc-cceeEEEEE
Confidence 99999999999999998877 77899999999996666765 78899999999999999999888875 567899999
Q ss_pred ecccCCccEEEEEecCCeEEEEEcCCCceeEEecCCCCcEEEEEEccCCCEEEEeccCCCCCCeEEEEeCCC----Ccee
Q 001477 505 PHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE----GAIK 580 (1071)
Q Consensus 505 ~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~----~~~~ 580 (1071)
|.... ..+++|+-|+.|++||++.......+.+|...|+.+..+|+|.++++.+. +.++++||++- .+++
T Consensus 182 f~d~s--~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsM----d~tvrvwd~rp~~p~~R~v 255 (338)
T KOG0265|consen 182 FKDTS--DQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSM----DNTVRVWDVRPFAPSQRCV 255 (338)
T ss_pred ecccc--cceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccc----cceEEEEEecccCCCCceE
Confidence 98654 78999999999999999999999999999999999999999999999886 88899999974 3457
Q ss_pred EEeeccccc---ceeEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCcEE
Q 001477 581 RTYSGFRKR---SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIK 657 (1071)
Q Consensus 581 ~~~~~~~~~---~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~ 657 (1071)
..+.++... ....++|+|++..+-+|+.|..+++||......+..+++|.+ .|+++.|+|....|.+++.|.+|+
T Consensus 256 ~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~g--svn~~~Fhp~e~iils~~sdk~i~ 333 (338)
T KOG0265|consen 256 KIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYG--SVNEVDFHPTEPIILSCSSDKTIY 333 (338)
T ss_pred EEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcce--eEEEeeecCCCcEEEEeccCceeE
Confidence 777776432 345688999999999999999999999999899988887654 899999999999999999999988
Q ss_pred EE
Q 001477 658 IL 659 (1071)
Q Consensus 658 iw 659 (1071)
+=
T Consensus 334 lg 335 (338)
T KOG0265|consen 334 LG 335 (338)
T ss_pred ee
Confidence 63
No 41
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=3.8e-33 Score=261.31 Aligned_cols=291 Identities=20% Similarity=0.306 Sum_probs=237.5
Q ss_pred EEeec-CCCCeEEEEeecC-CCeEEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeEEEEC
Q 001477 340 VRTLN-QGSNVMSMDFHPQ-QQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 417 (1071)
Q Consensus 340 ~~~~~-h~~~V~~~~fsp~-g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~s 417 (1071)
++.+. |.+.|+.++|+|- |. +||+|+.|..|+||+...+....- ...+-.+|+..|.+++|+
T Consensus 7 ~~~~~gh~~r~W~~awhp~~g~-ilAscg~Dk~vriw~~~~~~s~~c---------------k~vld~~hkrsVRsvAws 70 (312)
T KOG0645|consen 7 EQKLSGHKDRVWSVAWHPGKGV-ILASCGTDKAVRIWSTSSGDSWTC---------------KTVLDDGHKRSVRSVAWS 70 (312)
T ss_pred EEeecCCCCcEEEEEeccCCce-EEEeecCCceEEEEecCCCCcEEE---------------EEeccccchheeeeeeec
Confidence 44555 8889999999999 86 899999999999999885322110 011125799999999999
Q ss_pred CCCCEEEEEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccCC---ceeEEec
Q 001477 418 PDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG---RKQYTFE 494 (1071)
Q Consensus 418 pd~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~---~~~~~~~ 494 (1071)
|.|++||+||.|.++.||.-..++ ......++||...|.|++|+++|. +||+++.|+.|-||.+..+ +++..++
T Consensus 71 p~g~~La~aSFD~t~~Iw~k~~~e-fecv~~lEGHEnEVK~Vaws~sG~--~LATCSRDKSVWiWe~deddEfec~aVL~ 147 (312)
T KOG0645|consen 71 PHGRYLASASFDATVVIWKKEDGE-FECVATLEGHENEVKCVAWSASGN--YLATCSRDKSVWIWEIDEDDEFECIAVLQ 147 (312)
T ss_pred CCCcEEEEeeccceEEEeecCCCc-eeEEeeeeccccceeEEEEcCCCC--EEEEeeCCCeEEEEEecCCCcEEEEeeec
Confidence 999999999999999999877543 445668999999999999999999 8999999999999998754 5678899
Q ss_pred CCCCCeEEEEecccCCccEEEEEecCCeEEEEEcCC---CceeEEecCCCCcEEEEEEccCCCEEEEeccCCCCCCeEEE
Q 001477 495 GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY---LGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVE 571 (1071)
Q Consensus 495 ~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~---~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~i 571 (1071)
.|...|..+.|+|.. .+|++++.|++|++|+-.. -.....+.+|...|.+++|++.|..|++++. |++++|
T Consensus 148 ~HtqDVK~V~WHPt~--dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sd----D~tv~I 221 (312)
T KOG0645|consen 148 EHTQDVKHVIWHPTE--DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSD----DGTVSI 221 (312)
T ss_pred cccccccEEEEcCCc--ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecC----CcceEe
Confidence 999999999999987 7999999999999997663 2357788999999999999999999999975 888999
Q ss_pred EeCCCCceeEEeecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEE-----ecCCCCCCcceEEEcCC-CC
Q 001477 572 WNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTV-----DADGGLPASPRLRFNKE-GS 645 (1071)
Q Consensus 572 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-----~~~~~~~~v~~~~~s~~-~~ 645 (1071)
|...+ .+...+...+..+.|. ...|++++.|+.|++|.-...-.-..+ ..+.|...|+++.|+|. .+
T Consensus 222 w~~~~-----~~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~ 294 (312)
T KOG0645|consen 222 WRLYT-----DLSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSN 294 (312)
T ss_pred eeecc-----CcchhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCC
Confidence 98652 2334444478889998 568999999999999987643111111 12234458999999994 78
Q ss_pred EEEEEeCCCcEEEEEcC
Q 001477 646 LLAVTTSDNGIKILANS 662 (1071)
Q Consensus 646 ~l~~~~~dg~v~iw~~~ 662 (1071)
+|+++++||.+++|.+.
T Consensus 295 ~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 295 RLASGGDDGIVNFWELE 311 (312)
T ss_pred ceeecCCCceEEEEEec
Confidence 99999999999999864
No 42
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=100.00 E-value=3.3e-32 Score=275.86 Aligned_cols=495 Identities=15% Similarity=0.202 Sum_probs=360.2
Q ss_pred cccccCCChhhHHhhcccCCcceeeccCCCCCCccc---------------cCCccceeeEEeec-CCCCeEEEEeecC-
Q 001477 295 GMDYQSADSDHLMKRIRTGQSDEVSFAGVAHTPNVY---------------SQDDLTKTVVRTLN-QGSNVMSMDFHPQ- 357 (1071)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~~~~~~~---------------~~d~~~~~~~~~~~-h~~~V~~~~fsp~- 357 (1071)
.+.|+..+..+-.+..+..++.+++..|+.-.++.. .||.-+...+..+. -...|+|++||+-
T Consensus 87 ~Vl~n~ee~~Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~ 166 (626)
T KOG2106|consen 87 GVLYNWEERSQRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKIN 166 (626)
T ss_pred EEEEeehhhhcccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeeeccccccceeeeecccC
Confidence 445555554555566677788889999865444321 23433344444444 4668999999984
Q ss_pred -CCeEEEEE-cCCCeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeEEEECCCCCEEEEEeCCCeEEEE
Q 001477 358 -QQTILLVG-TNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLY 435 (1071)
Q Consensus 358 -g~~lla~g-s~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~la~~~~dg~i~iw 435 (1071)
|..+++.- +.+.-+.+||.+.+..... .+.....|..+.|.|.+..|......+.+..|
T Consensus 167 ~G~~l~~vD~s~~h~lSVWdWqk~~~~~~-------------------vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw 227 (626)
T KOG2106|consen 167 GGSLLCAVDDSNPHMLSVWDWQKKAKLGP-------------------VKTSNEVVFLATFHPTDPNLIITCGKGHLYFW 227 (626)
T ss_pred CCceEEEecCCCccccchhhchhhhccCc-------------------ceeccceEEEEEeccCCCcEEEEeCCceEEEE
Confidence 33333332 3455789999987765542 33456678999999976666665677899999
Q ss_pred EecCCCccceeeEeeccc-CCEEEEEEecCCCceEEEEEeCCCcEEEEEccCCceeEEecCCCCCeEEEEecccCCccEE
Q 001477 436 TYNPTGELRQHLEIDAHV-GGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFI 514 (1071)
Q Consensus 436 d~~~~~~~~~~~~~~~h~-~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l 514 (1071)
+.+++...+....++.+. .-|.|++|.++|+ ++||..+|.|.||+..+.+..+....|.+.|.+++...+ ..|
T Consensus 228 ~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd---viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~---Gtl 301 (626)
T KOG2106|consen 228 TLRGGSLVKRQGIFEKREKKFVLCVTFLENGD---VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRD---GTL 301 (626)
T ss_pred EccCCceEEEeeccccccceEEEEEEEcCCCC---EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecC---ccE
Confidence 999988777666666554 4699999999998 899999999999999888877777799999999998754 367
Q ss_pred EEEecCCeEEEEEcCCCceeE--EecCCCCcEEEEEEccCCCEEEEeccCCCCCCeEEEEeCCCCceeEEeeccccccee
Q 001477 515 FSTAIDGKIKAWLYDYLGSRV--DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLG 592 (1071)
Q Consensus 515 ~s~~~d~~i~vwd~~~~~~~~--~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~v~ 592 (1071)
++|+.|..|..|| ..-+... ++....+.|+.++-...+ ++.+.. .+.|..=.++++-. ....+|.+ ...
T Consensus 302 lSGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~d--i~vGTt----rN~iL~Gt~~~~f~-~~v~gh~d-elw 372 (626)
T KOG2106|consen 302 LSGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGKGD--ILVGTT----RNFILQGTLENGFT-LTVQGHGD-ELW 372 (626)
T ss_pred eecCccceEEecc-ccccccccccCchhcCCeeEEecCCCc--EEEeec----cceEEEeeecCCce-EEEEeccc-cee
Confidence 7899999999999 4333333 334445577776644333 555553 33354444444433 33456666 788
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCChhhhhhhhc
Q 001477 593 VVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLE 672 (1071)
Q Consensus 593 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~ 672 (1071)
.++.+|+.+.+++++.|+.+++|+ ..+++.+.... .++.++.|+|.| .++.|+..|...+.|.++. ..+ .
T Consensus 373 gla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~---d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~-~lv---~ 442 (626)
T KOG2106|consen 373 GLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIE---DPAECADFHPSG-VVAVGTATGRWFVLDTETQ-DLV---T 442 (626)
T ss_pred eEEcCCChhheeeccCcceEEEcc--CCceeEEEEec---CceeEeeccCcc-eEEEeeccceEEEEecccc-eeE---E
Confidence 899999999999999999999999 44444444322 367899999999 9999999999999998764 111 1
Q ss_pred CCccccccCCCCCCCCCCccccccCCCCccccccCCCCCCCCCCCCcccccccCCCCcccccccccccccccCccceecc
Q 001477 673 GRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRI 752 (1071)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~ 752 (1071)
-|.
T Consensus 443 ~~~----------------------------------------------------------------------------- 445 (626)
T KOG2106|consen 443 IHT----------------------------------------------------------------------------- 445 (626)
T ss_pred EEe-----------------------------------------------------------------------------
Confidence 000
Q ss_pred CCCCCcccceeeecCCCcCCCceEEEEEecccchhhhccccceeEEEecccccCCCCCccceeecceeccCCCCCccccc
Q 001477 753 PDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTND 832 (1071)
Q Consensus 753 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 832 (1071)
...+++.+.|+|+|.+++.++.|+.|++|.+..+ |..+...
T Consensus 446 ------------------d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~---------------------g~~y~r~ 486 (626)
T KOG2106|consen 446 ------------------DNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSAN---------------------GRKYSRV 486 (626)
T ss_pred ------------------cCCceEEEEEcCCCCEEEEecCCCeEEEEEECCC---------------------CcEEEEe
Confidence 2356899999999999999999999999977532 2222211
Q ss_pred cCCCCCCCCCeEEEEEecCCcEEEEEe-CCeEEEEECCCCeEEE--------------EE----eCCCCCeEEEEEcCCC
Q 001477 833 INESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMT--------------MF----MSPPPAATFLAFHPQD 893 (1071)
Q Consensus 833 ~~~~~h~~~~v~~v~~s~d~~~la~~~-dg~i~vwd~~~~~~~~--------------~~----~~~~~~i~~l~~sp~~ 893 (1071)
-. .| ..+|+.+.||+|++++.+-+ |-.|..|.....+... -| ..+...|..++-+. .
T Consensus 487 ~k--~~-gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~-~ 562 (626)
T KOG2106|consen 487 GK--CS-GSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSH-C 562 (626)
T ss_pred ee--ec-CceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhh-h
Confidence 11 24 68899999999999999998 8999999543221111 11 12455677888888 8
Q ss_pred CCEEEEEeCCCeEEEEEccCCe---EEEEecCcCCCeeEEEEcCCCCEEEEEeCCCcEEEEEC
Q 001477 894 NNIIAIGMEDSSVQIYNVRVDE---VKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSI 953 (1071)
Q Consensus 894 ~~~la~g~~dg~v~vwd~~~~~---~~~~l~~h~~~v~~l~~s~d~~~l~s~~~d~~v~vWd~ 953 (1071)
.+++|+|.+.|+|++|...-.+ ...++.+|++.|++++|..+...|++.+.|..|..|++
T Consensus 563 ~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 563 EKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred hhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence 8999999999999999987443 34567899999999999999999999999999999986
No 43
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.9e-33 Score=274.13 Aligned_cols=305 Identities=16% Similarity=0.245 Sum_probs=265.3
Q ss_pred ceeEEecCCCCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCceeEEecCCCCcEEEEEEccCCCEEEEeccCCCCCC
Q 001477 488 RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGES 567 (1071)
Q Consensus 488 ~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~ 567 (1071)
...+.+.+|..+|+.+.|+|.. ..+++++.|++|++||..+++....+.+|...+..++|+..|+++++++. |-
T Consensus 99 ~l~~~l~g~r~~vt~v~~hp~~--~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSs----Dl 172 (406)
T KOG0295|consen 99 NLVQKLAGHRSSVTRVIFHPSE--ALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSS----DL 172 (406)
T ss_pred CchhhhhccccceeeeeeccCc--eEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCC----cc
Confidence 4456677899999999999976 78899999999999999999999999999999999999999999999985 55
Q ss_pred eEEEEeCCC-CceeEEeecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCE
Q 001477 568 HLVEWNESE-GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSL 646 (1071)
Q Consensus 568 ~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 646 (1071)
.+.+||..+ .++++...+|.. .|.+++|-|.|.++++++.|.+|+.|++.++.++.++.+|.. .|..+..+.||.+
T Consensus 173 ~~~LWd~~~~~~c~ks~~gh~h-~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~e--wvr~v~v~~DGti 249 (406)
T KOG0295|consen 173 SAKLWDFDTFFRCIKSLIGHEH-GVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSE--WVRMVRVNQDGTI 249 (406)
T ss_pred chhheeHHHHHHHHHHhcCccc-ceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchH--hEEEEEecCCeeE
Confidence 699999986 567777888876 899999999999999999999999999999999999997765 8999999999999
Q ss_pred EEEEeCCCcEEEEEcCChhhhhhhhcCCccccccCCCCCCCCCCccccccCCCCccccccCCCCCCCCCCCCcccccccC
Q 001477 647 LAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLG 726 (1071)
Q Consensus 647 l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 726 (1071)
+++++.|.++++|-+.++ .+...++.
T Consensus 250 ~As~s~dqtl~vW~~~t~-~~k~~lR~----------------------------------------------------- 275 (406)
T KOG0295|consen 250 IASCSNDQTLRVWVVATK-QCKAELRE----------------------------------------------------- 275 (406)
T ss_pred EEecCCCceEEEEEeccc-hhhhhhhc-----------------------------------------------------
Confidence 999999999999999887 44444444
Q ss_pred CCCcccccccccccccccCccceeccCCCCCcccceeeecCCCcCCCceEEEEEecccchhhhccccceeEEEecccccC
Q 001477 727 TIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTER 806 (1071)
Q Consensus 727 ~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~ 806 (1071)
|+-.|.+++|.|...+--+ .+
T Consensus 276 --------------------------------------------hEh~vEci~wap~~~~~~i--~~------------- 296 (406)
T KOG0295|consen 276 --------------------------------------------HEHPVECIAWAPESSYPSI--SE------------- 296 (406)
T ss_pred --------------------------------------------cccceEEEEecccccCcch--hh-------------
Confidence 4455677777765431000 00
Q ss_pred CCCCccceeecceeccCCCCCccccccCCCCCCCCCeEEEEEecCCcEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeE
Q 001477 807 NPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAAT 885 (1071)
Q Consensus 807 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~v~~s~d~~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~ 885 (1071)
..+ ... .++++.+++ |++|++||+.++.++.++.+|.+-|.
T Consensus 297 --------------------------at~----~~~--------~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr 338 (406)
T KOG0295|consen 297 --------------------------ATG----STN--------GGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVR 338 (406)
T ss_pred --------------------------ccC----CCC--------CccEEEeecccceEEEEeccCCeEEEEEecccceee
Confidence 000 111 567899999 99999999999999999999999999
Q ss_pred EEEEcCCCCCEEEEEeCCCeEEEEEccCCeEEEEecCcCCCeeEEEEcCCCCEEEEEeCCCcEEEEEC
Q 001477 886 FLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSI 953 (1071)
Q Consensus 886 ~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~~~v~~l~~s~d~~~l~s~~~d~~v~vWd~ 953 (1071)
.++|+| +|++|+++.+|+++++||+.++++...+..|..-|+++.|..+..+++||+-|.++++|..
T Consensus 339 ~~af~p-~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 339 GVAFSP-GGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred eeEEcC-CCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 999999 9999999999999999999999999999999999999999999999999999999999964
No 44
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.5e-33 Score=273.42 Aligned_cols=246 Identities=16% Similarity=0.284 Sum_probs=228.9
Q ss_pred hcccCCCCeeEEEECCCCCEEEEEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEE
Q 001477 403 LLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 482 (1071)
Q Consensus 403 ~~~~h~~~v~~~~~spd~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iw 482 (1071)
++.+|.+.|.|+++-|...++++|+.|++|+|||+.+|+... ++.||...|..+++|+-.. ++++++.|+.|+.|
T Consensus 146 Vi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkl---tltGhi~~vr~vavS~rHp--YlFs~gedk~VKCw 220 (460)
T KOG0285|consen 146 VISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKL---TLTGHIETVRGVAVSKRHP--YLFSAGEDKQVKCW 220 (460)
T ss_pred hhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEE---eecchhheeeeeeecccCc--eEEEecCCCeeEEE
Confidence 478999999999999999999999999999999999997655 8889999999999999888 89999999999999
Q ss_pred EccCCceeEEecCCCCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCceeEEecCCCCcEEEEEEccCCCEEEEeccC
Q 001477 483 DVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTS 562 (1071)
Q Consensus 483 d~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~ 562 (1071)
|++..+.++.+.||-..|.+++.+|.- +.|++|+.|.++++||+++...+..+.+|..+|.++.+.|-...+++++.
T Consensus 221 DLe~nkvIR~YhGHlS~V~~L~lhPTl--dvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~- 297 (460)
T KOG0285|consen 221 DLEYNKVIRHYHGHLSGVYCLDLHPTL--DVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSH- 297 (460)
T ss_pred echhhhhHHHhccccceeEEEeccccc--eeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecC-
Confidence 999999999999999999999999976 79999999999999999999999999999999999999999999999985
Q ss_pred CCCCCeEEEEeCCCCceeEEeecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcC
Q 001477 563 KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK 642 (1071)
Q Consensus 563 ~d~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 642 (1071)
|++|++||++.|+...++..|.. .+.+++.+|....+++++.| .|+-|++..+..+..+.+|.. .+++++.+.
T Consensus 298 ---D~tvrlWDl~agkt~~tlt~hkk-svral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~--iintl~~ns 370 (460)
T KOG0285|consen 298 ---DSTVRLWDLRAGKTMITLTHHKK-SVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNA--IINTLSVNS 370 (460)
T ss_pred ---CceEEEeeeccCceeEeeecccc-eeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccc--eeeeeeecc
Confidence 88999999999999999998887 89999999999999998877 589999999999988876644 688888887
Q ss_pred CCCEEEEEeCCCcEEEEEcCCh
Q 001477 643 EGSLLAVTTSDNGIKILANSDG 664 (1071)
Q Consensus 643 ~~~~l~~~~~dg~v~iw~~~~~ 664 (1071)
|| ++++|+++|.+.+||.+++
T Consensus 371 D~-v~~~G~dng~~~fwdwksg 391 (460)
T KOG0285|consen 371 DG-VLVSGGDNGSIMFWDWKSG 391 (460)
T ss_pred Cc-eEEEcCCceEEEEEecCcC
Confidence 76 7889999999999999988
No 45
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=3.3e-30 Score=271.81 Aligned_cols=500 Identities=12% Similarity=0.140 Sum_probs=365.6
Q ss_pred CCCeeEEEECCCCCEEEEEeCCCeEEEEEecCCCccceeeEeecc-cCCEEEEEEecCCCceEEEEEeCCCcEEEEEccC
Q 001477 408 AISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAH-VGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA 486 (1071)
Q Consensus 408 ~~~v~~~~~spd~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h-~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~ 486 (1071)
..+|.++|||.+.+.||.+-.||.|.||++..+=.. ...+.++ ...|.+++|++.++ |.+.+.+|.|.-||+.+
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~--~~vi~g~~drsIE~L~W~e~~R---LFS~g~sg~i~EwDl~~ 99 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFL--EPVIHGPEDRSIESLAWAEGGR---LFSSGLSGSITEWDLHT 99 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCCcee--eEEEecCCCCceeeEEEccCCe---EEeecCCceEEEEeccc
Confidence 457999999999999999999999999999885332 2345554 45799999996664 88999999999999999
Q ss_pred CceeEEecCCCCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCceeE--EecCCCCcEEEEEEccCCCEEEEeccCCC
Q 001477 487 GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV--DYDAPGNWCTMMAYSADGTRLFSCGTSKE 564 (1071)
Q Consensus 487 ~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~--~~~~~~~~i~~~~~s~~~~~l~~~~~~~d 564 (1071)
+++++.+....+.|++++.+|.. ..++.|+.||.+..++...+.... .+....+.+.+++|+|++..++.|+.
T Consensus 100 lk~~~~~d~~gg~IWsiai~p~~--~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~--- 174 (691)
T KOG2048|consen 100 LKQKYNIDSNGGAIWSIAINPEN--TILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSI--- 174 (691)
T ss_pred CceeEEecCCCcceeEEEeCCcc--ceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEeccc---
Confidence 99999999999999999999876 789999999987777776655544 34445679999999999999999986
Q ss_pred CCCeEEEEeCCCCceeEEee-------cccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcce
Q 001477 565 GESHLVEWNESEGAIKRTYS-------GFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPR 637 (1071)
Q Consensus 565 ~~~~i~iwd~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 637 (1071)
|+.|++||..++..+.... .....-|.++.|-.+ ..+++|...|+|.+||...+.++.....|.. .|.+
T Consensus 175 -Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~a--dVl~ 250 (691)
T KOG2048|consen 175 -DGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTLIQSHSCHDA--DVLA 250 (691)
T ss_pred -CceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcchhhhhhhhhc--ceeE
Confidence 8889999999988766221 112224677777754 5789999999999999999999999887754 7999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEcCChhhhhhhhcCCccccccCCCCCCCCCCccccccCCCCccccccCCCCCCCCCCC
Q 001477 638 LRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGP 717 (1071)
Q Consensus 638 ~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 717 (1071)
++.++++.++++++.|+.|.-|...+.... ++.
T Consensus 251 Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~---------wv~-------------------------------------- 283 (691)
T KOG2048|consen 251 LAVADNEDRVFSAGVDPKIIQYSLTTNKSE---------WVI-------------------------------------- 283 (691)
T ss_pred EEEcCCCCeEEEccCCCceEEEEecCCccc---------eee--------------------------------------
Confidence 999999999999999999988876655210 100
Q ss_pred CcccccccCCCCcccccccccccccccCccceeccCCCCCcccceeeecCCCcCCCceEEEEEecccchhhhccccceeE
Q 001477 718 PAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHK 797 (1071)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~~~~~dg~v~ 797 (1071)
..+...|...|++++..++ .+++|+.|..+.
T Consensus 284 -----------------------------------------------~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~ 314 (691)
T KOG2048|consen 284 -----------------------------------------------NSRRDLHAHDVRSMAVIEN--ALISGGRDFTLA 314 (691)
T ss_pred -----------------------------------------------eccccCCcccceeeeeecc--eEEecceeeEEE
Confidence 0011126677888888887 688999998887
Q ss_pred EEecccccCCCCCccceeecceeccCCCCCccccccCCCCCCCCCeEEEEEecCCcEEEEEeCCeEEEEECCCCe-----
Q 001477 798 LWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFK----- 872 (1071)
Q Consensus 798 vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~v~~s~d~~~la~~~dg~i~vwd~~~~~----- 872 (1071)
+-.... + ...... +..... ... -+...|..++++.-.+..+.+|.+.+.-
T Consensus 315 i~~s~~--~---------------~~~~h~--~~~~~p----~~~--~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~ 369 (691)
T KOG2048|consen 315 ICSSRE--F---------------KNMDHR--QKNLFP----ASD--RVSVAPENRLLVLWKAHGVDLWRLGSVILQGEY 369 (691)
T ss_pred Eccccc--c---------------Cchhhh--cccccc----ccc--eeecCccceEEEEeccccccceeccCccccccc
Confidence 632211 0 000000 000000 111 2344555566666667888899886541
Q ss_pred ----EEEEEeCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEccCCeEEEE-----ecCcCCCeeEEEEcCCCCEEEEEe
Q 001477 873 ----VMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK-----LKGHQNRITGLAFSPTLNALVSSG 943 (1071)
Q Consensus 873 ----~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~-----l~~h~~~v~~l~~s~d~~~l~s~~ 943 (1071)
+.+........|.+.+.|| +|++||.+.- ..++||.+.....+.. .....-....+.|+-|+..++.++
T Consensus 370 ~~~~Llkl~~k~~~nIs~~aiSP-dg~~Ia~st~-~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s 447 (691)
T KOG2048|consen 370 NYIHLLKLFTKEKENISCAAISP-DGNLIAISTV-SRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVS 447 (691)
T ss_pred ChhhheeeecCCccceeeeccCC-CCCEEEEeec-cceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEe
Confidence 2222333445799999999 9999998764 4688888875322222 222333567889999999888888
Q ss_pred -CCCcEEEEECCCCceeeeeeecCCCCCCCCCCCceEEEEccCCCEEEE-EECCeEEEEeCCCCceeecCCCCCCCCCee
Q 001477 944 -ADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDSKLECSRSWSPKDALPAPIS 1021 (1071)
Q Consensus 944 -~d~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~i~vwd~~~~~~~~~~~~~~h~~~v~ 1021 (1071)
.+..+.+.++++........+. .+.....|..++.||||.|||+ +..+.|.+|++.....+.+.... +..|+
T Consensus 448 ~~~~~le~~el~~ps~kel~~~~----~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~rl--n~~vT 521 (691)
T KOG2048|consen 448 KNIFSLEEFELETPSFKELKSIQ----SQAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKVRL--NIDVT 521 (691)
T ss_pred cccceeEEEEecCcchhhhhccc----cccCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchhcc--Cccee
Confidence 6777888888775432221111 1123378999999999999998 57999999999655555544322 57899
Q ss_pred EEEEe-cCCcEEEEEeCCCeEEEEEcCCCe
Q 001477 1022 SAIYS-CDGLLVYAGFCDGAIGVFDAETLR 1050 (1071)
Q Consensus 1022 ~~~~s-~dg~~l~t~~~Dg~i~vwd~~~~~ 1050 (1071)
.++|+ ++...|+.+..|+.|+-||++..+
T Consensus 522 a~~~~~~~~~~lvvats~nQv~efdi~~~~ 551 (691)
T KOG2048|consen 522 AAAFSPFVRNRLVVATSNNQVFEFDIEARN 551 (691)
T ss_pred eeeccccccCcEEEEecCCeEEEEecchhh
Confidence 99999 466678889999999999995444
No 46
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.4e-32 Score=309.55 Aligned_cols=286 Identities=20% Similarity=0.357 Sum_probs=251.5
Q ss_pred CCCCeEEEEeecCCCeEEEEEcCCCeEEEEecCCCc--ccccccceeecccccccchhhhhcccCCCCeeEEEECCCCCE
Q 001477 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRE--RLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLM 422 (1071)
Q Consensus 345 h~~~V~~~~fsp~g~~lla~gs~dg~i~iwd~~~~~--~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~ 422 (1071)
+...|+|+.|||+|+ .+++++.|+.+++|+..+++ .... +.+|...|.+++|+|||++
T Consensus 158 ~~~sv~~~~fs~~g~-~l~~~~~~~~i~~~~~~~~~~~~~~~-------------------l~~h~~~v~~~~fs~d~~~ 217 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGR-ALAAASSDGLIRIWKLEGIKSNLLRE-------------------LSGHTRGVSDVAFSPDGSY 217 (456)
T ss_pred ccCceEEEEEcCCCC-eEEEccCCCcEEEeecccccchhhcc-------------------ccccccceeeeEECCCCcE
Confidence 478999999999998 58999999999999996665 2221 5789999999999999999
Q ss_pred EEEEeCCCeEEEEEec-CCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccCCceeEEecCCCCCeE
Q 001477 423 LGVAFSKHIVHLYTYN-PTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVY 501 (1071)
Q Consensus 423 la~~~~dg~i~iwd~~-~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~ 501 (1071)
+++++.|++|+|||+. .+..++ ++.+|...|++++|+|+|+ ++++|+.|++|++||+++++++..+.+|.+.|.
T Consensus 218 l~s~s~D~tiriwd~~~~~~~~~---~l~gH~~~v~~~~f~p~g~--~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is 292 (456)
T KOG0266|consen 218 LLSGSDDKTLRIWDLKDDGRNLK---TLKGHSTYVTSVAFSPDGN--LLVSGSDDGTVRIWDVRTGECVRKLKGHSDGIS 292 (456)
T ss_pred EEEecCCceEEEeeccCCCeEEE---EecCCCCceEEEEecCCCC--EEEEecCCCcEEEEeccCCeEEEeeeccCCceE
Confidence 9999999999999994 434444 8889999999999999996 899999999999999999999999999999999
Q ss_pred EEEecccCCccEEEEEecCCeEEEEEcCCCce--eEEecCCCC--cEEEEEEccCCCEEEEeccCCCCCCeEEEEeCCCC
Q 001477 502 SVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS--RVDYDAPGN--WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG 577 (1071)
Q Consensus 502 ~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~--~~~~~~~~~--~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~ 577 (1071)
+++|++++ .+|++++.|+.|++||+.++.. ...+..+.. .++++.|+|++.++++++. ++.+++||+..+
T Consensus 293 ~~~f~~d~--~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~----d~~~~~w~l~~~ 366 (456)
T KOG0266|consen 293 GLAFSPDG--NLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASL----DRTLKLWDLRSG 366 (456)
T ss_pred EEEECCCC--CEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecC----CCeEEEEEccCC
Confidence 99999755 8999999999999999999883 445544444 5999999999999999985 778999999999
Q ss_pred ceeEEeeccccc--ceeEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEe--CC
Q 001477 578 AIKRTYSGFRKR--SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTT--SD 653 (1071)
Q Consensus 578 ~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~d 653 (1071)
.....+.+|... .+.+...++.+.++++|+.|+.|++||+.++..+..+.+|. ...+..+.++|..+++++++ .|
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~-~~~~~~~~~~~~~~~~~s~s~~~d 445 (456)
T KOG0266|consen 367 KSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHS-KAAVSDLSSHPTENLIASSSFEGD 445 (456)
T ss_pred cceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCC-CCceeccccCCCcCeeeecCcCCC
Confidence 999999999874 34445567889999999999999999999999999998875 45789999999999999998 78
Q ss_pred CcEEEEEcC
Q 001477 654 NGIKILANS 662 (1071)
Q Consensus 654 g~v~iw~~~ 662 (1071)
+.+++|...
T Consensus 446 ~~~~~w~~~ 454 (456)
T KOG0266|consen 446 GLIRLWKYD 454 (456)
T ss_pred ceEEEecCC
Confidence 999999753
No 47
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=9.9e-33 Score=262.40 Aligned_cols=252 Identities=16% Similarity=0.285 Sum_probs=217.8
Q ss_pred hhcccCCCCeeEEEECCCCCEEEEEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEE
Q 001477 402 ALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKV 481 (1071)
Q Consensus 402 ~~~~~h~~~v~~~~~spd~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~i 481 (1071)
..+.+|++.|+.+.|+|+|.++|+|+.|..|.+|++.... .....+.+|.++|..+.|.+|+. .+++++.|++|+.
T Consensus 41 m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc--eN~~~lkgHsgAVM~l~~~~d~s--~i~S~gtDk~v~~ 116 (338)
T KOG0265|consen 41 MLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC--ENFWVLKGHSGAVMELHGMRDGS--HILSCGTDKTVRG 116 (338)
T ss_pred hhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccc--cceeeeccccceeEeeeeccCCC--EEEEecCCceEEE
Confidence 3478999999999999999999999999999999976533 23346779999999999999999 8999999999999
Q ss_pred EEccCCceeEEecCCCCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCceeEEecCCCCcEEEEEEccCCCEEEEecc
Q 001477 482 WDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGT 561 (1071)
Q Consensus 482 wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 561 (1071)
||+++|++++.+++|..-|+++..... ...++.+++.|+++++||++.......+. ...+++++.|..++..+.+++-
T Consensus 117 wD~~tG~~~rk~k~h~~~vNs~~p~rr-g~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggI 194 (338)
T KOG0265|consen 117 WDAETGKRIRKHKGHTSFVNSLDPSRR-GPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGI 194 (338)
T ss_pred EecccceeeehhccccceeeecCcccc-CCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeeccc
Confidence 999999999999999999999984433 23678889999999999999777665543 3457899999999999999987
Q ss_pred CCCCCCeEEEEeCCCCceeEEeecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCC----CceeEEEecCCCCC--Cc
Q 001477 562 SKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN----MNMLTTVDADGGLP--AS 635 (1071)
Q Consensus 562 ~~d~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~~--~v 635 (1071)
|+.|++||++.+.....+.+|.+ .|..+..+++|.++.+-+.|.++++||++. ..++..+.++.+.- ..
T Consensus 195 ----dn~ikvWd~r~~d~~~~lsGh~D-tIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknl 269 (338)
T KOG0265|consen 195 ----DNDIKVWDLRKNDGLYTLSGHAD-TITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNL 269 (338)
T ss_pred ----cCceeeeccccCcceEEeecccC-ceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhc
Confidence 66699999999999999999998 999999999999999999999999999985 33466676654432 33
Q ss_pred ceEEEcCCCCEEEEEeCCCcEEEEEcCCh
Q 001477 636 PRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1071)
Q Consensus 636 ~~~~~s~~~~~l~~~~~dg~v~iw~~~~~ 664 (1071)
..++|+|++..+..|+.|..+++||....
T Consensus 270 L~cswsp~~~~i~ags~dr~vyvwd~~~r 298 (338)
T KOG0265|consen 270 LKCSWSPNGTKITAGSADRFVYVWDTTSR 298 (338)
T ss_pred ceeeccCCCCccccccccceEEEeecccc
Confidence 57899999999999999999999997543
No 48
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.4e-32 Score=251.52 Aligned_cols=287 Identities=14% Similarity=0.218 Sum_probs=248.3
Q ss_pred eeEEeec-CCCCeEEEEeecCCCeEEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeEEEE
Q 001477 338 TVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW 416 (1071)
Q Consensus 338 ~~~~~~~-h~~~V~~~~fsp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~ 416 (1071)
+....+. +.++|.++.|+-||+ +..+++.|.+|++|+...|..+.+ +.+|...|..++.
T Consensus 8 kr~~~l~~~qgaV~avryN~dGn-Y~ltcGsdrtvrLWNp~rg~likt-------------------YsghG~EVlD~~~ 67 (307)
T KOG0316|consen 8 KRLSILDCAQGAVRAVRYNVDGN-YCLTCGSDRTVRLWNPLRGALIKT-------------------YSGHGHEVLDAAL 67 (307)
T ss_pred hhceeecccccceEEEEEccCCC-EEEEcCCCceEEeecccccceeee-------------------ecCCCceeeeccc
Confidence 3445555 789999999999998 566777899999999999988875 7899999999999
Q ss_pred CCCCCEEEEEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccC--CceeEEec
Q 001477 417 GPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA--GRKQYTFE 494 (1071)
Q Consensus 417 spd~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~--~~~~~~~~ 494 (1071)
+.|...+++|+.|..+.+||+++|+..+ .+.+|.+.|+.++|+.+.. .+++|+.|.++++||.++ .++++.+.
T Consensus 68 s~Dnskf~s~GgDk~v~vwDV~TGkv~R---r~rgH~aqVNtV~fNeesS--Vv~SgsfD~s~r~wDCRS~s~ePiQild 142 (307)
T KOG0316|consen 68 SSDNSKFASCGGDKAVQVWDVNTGKVDR---RFRGHLAQVNTVRFNEESS--VVASGSFDSSVRLWDCRSRSFEPIQILD 142 (307)
T ss_pred cccccccccCCCCceEEEEEcccCeeee---ecccccceeeEEEecCcce--EEEeccccceeEEEEcccCCCCccchhh
Confidence 9999999999999999999999999887 8889999999999999988 999999999999999986 56788888
Q ss_pred CCCCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCceeEEecCCCCcEEEEEEccCCCEEEEeccCCCCCCeEEEEeC
Q 001477 495 GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNE 574 (1071)
Q Consensus 495 ~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~ 574 (1071)
.....|.++..+. ..+++|+.||++|.||++.+.....+ .+.+|++++|++|++..++++. ++++++.|-
T Consensus 143 ea~D~V~Si~v~~----heIvaGS~DGtvRtydiR~G~l~sDy--~g~pit~vs~s~d~nc~La~~l----~stlrLlDk 212 (307)
T KOG0316|consen 143 EAKDGVSSIDVAE----HEIVAGSVDGTVRTYDIRKGTLSSDY--FGHPITSVSFSKDGNCSLASSL----DSTLRLLDK 212 (307)
T ss_pred hhcCceeEEEecc----cEEEeeccCCcEEEEEeecceeehhh--cCCcceeEEecCCCCEEEEeec----cceeeeccc
Confidence 8889999998864 67999999999999999987665433 4568999999999999998876 888999999
Q ss_pred CCCceeEEeecccccce-eEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCC
Q 001477 575 SEGAIKRTYSGFRKRSL-GVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSD 653 (1071)
Q Consensus 575 ~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 653 (1071)
.+|+++..+.+|..... ..++++.....+++|++||.|++||+.....+..+..+.. ..+.++.++|.-..++++...
T Consensus 213 ~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~-v~v~dl~~hp~~~~f~~A~~~ 291 (307)
T KOG0316|consen 213 ETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVST-VIVTDLSCHPTMDDFITATGH 291 (307)
T ss_pred chhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCc-eeEEeeecccCccceeEecCC
Confidence 99999999999976433 2466778888999999999999999999999999987665 247899999987777777654
Q ss_pred CcEEEEEc
Q 001477 654 NGIKILAN 661 (1071)
Q Consensus 654 g~v~iw~~ 661 (1071)
.+.+|.-
T Consensus 292 -~~~~~~~ 298 (307)
T KOG0316|consen 292 -GDLFWYQ 298 (307)
T ss_pred -ceeceee
Confidence 4555643
No 49
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.7e-32 Score=269.61 Aligned_cols=293 Identities=17% Similarity=0.279 Sum_probs=236.0
Q ss_pred hcccCCCCeeEEEECCCCCEEEEEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEE
Q 001477 403 LLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 482 (1071)
Q Consensus 403 ~~~~h~~~v~~~~~spd~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iw 482 (1071)
++..|++.|+-+.||++|++||+++.|.+..+|++.....++..+++.+|..+|..+.||||.+ ++++|+.|..+.+|
T Consensus 219 il~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdr--yLlaCg~~e~~~lw 296 (519)
T KOG0293|consen 219 ILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDR--YLLACGFDEVLSLW 296 (519)
T ss_pred hHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCC--eEEecCchHheeec
Confidence 4778999999999999999999999999999999987776777779999999999999999999 89999999999999
Q ss_pred EccCCceeEEecC-CCCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCceeEEecCCCCcEEEEEEccCCCEEEEecc
Q 001477 483 DVVAGRKQYTFEG-HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGT 561 (1071)
Q Consensus 483 d~~~~~~~~~~~~-h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 561 (1071)
|+.+|.+.+.+.. +...+.+.+|.|++ ..+++|+.|+++..||++
T Consensus 297 Dv~tgd~~~~y~~~~~~S~~sc~W~pDg--~~~V~Gs~dr~i~~wdlD-------------------------------- 342 (519)
T KOG0293|consen 297 DVDTGDLRHLYPSGLGFSVSSCAWCPDG--FRFVTGSPDRTIIMWDLD-------------------------------- 342 (519)
T ss_pred cCCcchhhhhcccCcCCCcceeEEccCC--ceeEecCCCCcEEEecCC--------------------------------
Confidence 9999998876642 34555666665543 455555555555555443
Q ss_pred CCCCCCeEEEEeCCCCceeEEeecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEc
Q 001477 562 SKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFN 641 (1071)
Q Consensus 562 ~~d~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s 641 (1071)
|......++.....|.+++..+||+++++.+.|..|++++.++......+..+ .+|++...|
T Consensus 343 ---------------gn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~---~~its~~iS 404 (519)
T KOG0293|consen 343 ---------------GNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEE---QPITSFSIS 404 (519)
T ss_pred ---------------cchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhcccccc---CceeEEEEc
Confidence 23333334434346888999999999999999999999999887666555433 378999999
Q ss_pred CCCCEEEEEeCCCcEEEEEcCChhhhhhhhcCCccccccCCCCCCCCCCccccccCCCCccccccCCCCCCCCCCCCccc
Q 001477 642 KEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVS 721 (1071)
Q Consensus 642 ~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (1071)
.|++++++--.+..+++||++.. ++++...||...
T Consensus 405 ~d~k~~LvnL~~qei~LWDl~e~-~lv~kY~Ghkq~-------------------------------------------- 439 (519)
T KOG0293|consen 405 KDGKLALVNLQDQEIHLWDLEEN-KLVRKYFGHKQG-------------------------------------------- 439 (519)
T ss_pred CCCcEEEEEcccCeeEEeecchh-hHHHHhhccccc--------------------------------------------
Confidence 99999999999999999999966 677776665421
Q ss_pred ccccCCCCcccccccccccccccCccceeccCCCCCcccceeeecCCCcCCCceEEEEEecccchhhhccccceeEEEec
Q 001477 722 ISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKW 801 (1071)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~~~~~dg~v~vw~~ 801 (1071)
++++
T Consensus 440 ---------------------------------------------------------------~fiI------------- 443 (519)
T KOG0293|consen 440 ---------------------------------------------------------------HFII------------- 443 (519)
T ss_pred ---------------------------------------------------------------ceEE-------------
Confidence 0000
Q ss_pred ccccCCCCCccceeecceeccCCCCCccccccCCCCCCCCCeEEEEEe-cCCcEEEEEe-CCeEEEEECCCCeEEEEEeC
Q 001477 802 QRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALS-KNDSYVMSAS-GGKVSLFNMMTFKVMTMFMS 879 (1071)
Q Consensus 802 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~v~~s-~d~~~la~~~-dg~i~vwd~~~~~~~~~~~~ 879 (1071)
.-||- .+.+++|+|+ |++|+||+..+++++.++.|
T Consensus 444 -------------------------------------------rSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsG 480 (519)
T KOG0293|consen 444 -------------------------------------------RSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSG 480 (519)
T ss_pred -------------------------------------------EeccCCCCcceEEecCCCceEEEEEccCCceeEeecC
Confidence 01111 2668999999 99999999999999999999
Q ss_pred CCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEccC
Q 001477 880 PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV 913 (1071)
Q Consensus 880 ~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~ 913 (1071)
|...|++++|+|.+..++|+|++||+|+||....
T Consensus 481 Hs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 481 HSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred CcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 9999999999998899999999999999998653
No 50
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=8.8e-29 Score=261.11 Aligned_cols=544 Identities=14% Similarity=0.166 Sum_probs=370.0
Q ss_pred CCCCeEEEEeecCCCeEEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhhhcc-cCCCCeeEEEECCCCCEE
Q 001477 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLN-DAAISVNRCVWGPDGLML 423 (1071)
Q Consensus 345 h~~~V~~~~fsp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-~h~~~v~~~~~spd~~~l 423 (1071)
.+.+|.|++||.+.+ .||.+-.||.|.||++..+-... .++. +....|.+++|+ ++..|
T Consensus 24 ~Ps~I~slA~s~kS~-~lAvsRt~g~IEiwN~~~~w~~~------------------~vi~g~~drsIE~L~W~-e~~RL 83 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSN-QLAVSRTDGNIEIWNLSNNWFLE------------------PVIHGPEDRSIESLAWA-EGGRL 83 (691)
T ss_pred eccceEEEEEeccCC-ceeeeccCCcEEEEccCCCceee------------------EEEecCCCCceeeEEEc-cCCeE
Confidence 467999999999998 58889999999999998753221 1123 346789999999 55667
Q ss_pred EEEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccCCceeE--EecCCCCCeE
Q 001477 424 GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY--TFEGHEAPVY 501 (1071)
Q Consensus 424 a~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~--~~~~h~~~v~ 501 (1071)
.+.+.+|.|.-||+.+++... .+....+.|++++.+|.+. .++.|++||.+...+...++..+ .|...+++|.
T Consensus 84 FS~g~sg~i~EwDl~~lk~~~---~~d~~gg~IWsiai~p~~~--~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvL 158 (691)
T KOG2048|consen 84 FSSGLSGSITEWDLHTLKQKY---NIDSNGGAIWSIAINPENT--ILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVL 158 (691)
T ss_pred EeecCCceEEEEecccCceeE---EecCCCcceeEEEeCCccc--eEEeecCCceEEEEecCCceEEEEeecccccceEE
Confidence 788899999999999987655 6777888999999999998 78999999988888888877654 3444679999
Q ss_pred EEEecccCCccEEEEEecCCeEEEEEcCCCceeEEecC--------CCCcEEEEEEccCCCEEEEeccCCCCCCeEEEEe
Q 001477 502 SVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA--------PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWN 573 (1071)
Q Consensus 502 ~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~--------~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd 573 (1071)
++.|+|++ ..+++|+.||.|++||...+........ ...-|.++.|-.+ ..+++|. ..|.|.+||
T Consensus 159 slsw~~~~--~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgD----S~G~V~FWd 231 (691)
T KOG2048|consen 159 SLSWNPTG--TKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGD----SAGTVTFWD 231 (691)
T ss_pred EEEecCCc--cEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEec----CCceEEEEc
Confidence 99999865 7799999999999999998877662211 2235777777755 4566653 488899999
Q ss_pred CCCCceeEEeecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCCcee--EEEecCCCCCCcceEEEcCCCCEEEEEe
Q 001477 574 ESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNML--TTVDADGGLPASPRLRFNKEGSLLAVTT 651 (1071)
Q Consensus 574 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 651 (1071)
...|..++.+..|.. .|.+++..+++++++++|.|+.|.-+...++... .......+...|.+++..++ .+++|+
T Consensus 232 ~~~gTLiqS~~~h~a-dVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG 308 (691)
T KOG2048|consen 232 SIFGTLIQSHSCHDA-DVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGG 308 (691)
T ss_pred ccCcchhhhhhhhhc-ceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecc
Confidence 999999999999988 8999999999999999999999999988776431 11122223347889998877 899999
Q ss_pred CCCcEEEEEcCChhhhhhhhcCCccccccCCCCCCCCCCccccccCCCCccccccCCCCCCCCCCCCcccccccCCCCcc
Q 001477 652 SDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGS 731 (1071)
Q Consensus 652 ~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 731 (1071)
.|.++.+-..... ....|.....
T Consensus 309 ~d~~l~i~~s~~~-----~~~~h~~~~~---------------------------------------------------- 331 (691)
T KOG2048|consen 309 RDFTLAICSSREF-----KNMDHRQKNL---------------------------------------------------- 331 (691)
T ss_pred eeeEEEEcccccc-----Cchhhhcccc----------------------------------------------------
Confidence 9998887543321 0111110000
Q ss_pred cccccccccccccCccceeccCCCCCcccceeeecCCCcCCCceEEEEEecccchhhhccccceeEEEecccccCCCCCc
Q 001477 732 RLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGK 811 (1071)
Q Consensus 732 ~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~g~ 811 (1071)
.+.+.. +...| .++|+..-....+.+|.+.... +.|.
T Consensus 332 -~p~~~~---------------------------------------v~~a~-~~~L~~~w~~h~v~lwrlGS~~--~~g~ 368 (691)
T KOG2048|consen 332 -FPASDR---------------------------------------VSVAP-ENRLLVLWKAHGVDLWRLGSVI--LQGE 368 (691)
T ss_pred -ccccce---------------------------------------eecCc-cceEEEEeccccccceeccCcc--cccc
Confidence 000000 00011 1112222222334444332210 0000
Q ss_pred cceeecceeccCCCCCccccccCCCCCCCCCeEEEEEecCCcEEEEEeCCeEEEEECCCCeEEEEEe-----CCCCCeEE
Q 001477 812 ATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFM-----SPPPAATF 886 (1071)
Q Consensus 812 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~v~~s~d~~~la~~~dg~i~vwd~~~~~~~~~~~-----~~~~~i~~ 886 (1071)
..-..+.....++ ...|.+.+.||||+++|.+.-..++||.++.-..+.... ...-....
T Consensus 369 -----------~~~~~Llkl~~k~----~~nIs~~aiSPdg~~Ia~st~~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~ 433 (691)
T KOG2048|consen 369 -----------YNYIHLLKLFTKE----KENISCAAISPDGNLIAISTVSRTKIYRLQPDPNVKVINVDDVPLALLDASA 433 (691)
T ss_pred -----------cChhhheeeecCC----ccceeeeccCCCCCEEEEeeccceEEEEeccCcceeEEEeccchhhhcccee
Confidence 0011122222343 678999999999999999987788888887532222211 12235677
Q ss_pred EEEcCCCCCEEEEEe-CCCeEEEEEccCCe--EEEEec--CcCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeee
Q 001477 887 LAFHPQDNNIIAIGM-EDSSVQIYNVRVDE--VKTKLK--GHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKS 961 (1071)
Q Consensus 887 l~~sp~~~~~la~g~-~dg~v~vwd~~~~~--~~~~l~--~h~~~v~~l~~s~d~~~l~s~~~d~~v~vWd~~~~~~~~~ 961 (1071)
+.|+- ++..++.++ .+..+.++++.+.. .+..+. +-...|..|+.|+||+|+|..+.+|.|.+|++++++....
T Consensus 434 i~fti-d~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l 512 (691)
T KOG2048|consen 434 ISFTI-DKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLL 512 (691)
T ss_pred eEEEe-cCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecc
Confidence 88888 666666666 77889998887653 222222 3456799999999999999999999999999999763321
Q ss_pred eeecCCCCCCCCCCCceEEEEccC-CCEEEE-EECCeEEEEeCCCCceeecCCC---------CCCCCCeeEEEEecCCc
Q 001477 962 RFIQAPAGRQSPLVGETKVQFHND-QTHLLV-VHESQISVYDSKLECSRSWSPK---------DALPAPISSAIYSCDGL 1030 (1071)
Q Consensus 962 ~~~~~~~~~~~~~~~v~~~~~s~d-g~~l~~-~~d~~i~vwd~~~~~~~~~~~~---------~~h~~~v~~~~~s~dg~ 1030 (1071)
..... ..++.++|+|. ...|++ .+++.+.-||+..+.+..+... ..-...+..+.|+|..+
T Consensus 513 --~~rln------~~vTa~~~~~~~~~~lvvats~nQv~efdi~~~~l~~ws~~nt~nlpk~~~~l~~~~~gisfd~~n~ 584 (691)
T KOG2048|consen 513 --KVRLN------IDVTAAAFSPFVRNRLVVATSNNQVFEFDIEARNLTRWSKNNTRNLPKEPKTLIPGIPGISFDPKNS 584 (691)
T ss_pred --hhccC------cceeeeeccccccCcEEEEecCCeEEEEecchhhhhhhhhccccccccChhhcCCCCceEEeCCCCc
Confidence 11111 46899999964 345555 5789999999843333322111 11145677888877655
Q ss_pred EEEEEeCCCeEEEEEcC
Q 001477 1031 LVYAGFCDGAIGVFDAE 1047 (1071)
Q Consensus 1031 ~l~t~~~Dg~i~vwd~~ 1047 (1071)
..+..-..+-+++.|..
T Consensus 585 s~~~~~~a~w~~~id~~ 601 (691)
T KOG2048|consen 585 SRFIVYDAHWSCLIDFS 601 (691)
T ss_pred cEEEEEcCcEEEEEecC
Confidence 54444444556666543
No 51
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=8.6e-33 Score=297.65 Aligned_cols=246 Identities=17% Similarity=0.345 Sum_probs=227.2
Q ss_pred CCCeeEEEECCCCCEEEEEeCCCeEEEEEecCCC--------c--------------------cceeeEeecccCCEEEE
Q 001477 408 AISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTG--------E--------------------LRQHLEIDAHVGGVNDI 459 (1071)
Q Consensus 408 ~~~v~~~~~spd~~~la~~~~dg~i~iwd~~~~~--------~--------------------~~~~~~~~~h~~~v~~~ 459 (1071)
...++|..||+|++.||.|..|..|++|.+...+ . .....++.||.++|..+
T Consensus 378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~ 457 (707)
T KOG0263|consen 378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGC 457 (707)
T ss_pred CCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeee
Confidence 3469999999999999999999999999987421 0 01133578999999999
Q ss_pred EEecCCCceEEEEEeCCCcEEEEEccCCceeEEecCCCCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCceeEEecC
Q 001477 460 AFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA 539 (1071)
Q Consensus 460 ~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~ 539 (1071)
.|+|+.+ +|++++.|+++++|.+.+..++..++||..+|+.+.|+|.+ -+++|+|.|++-++|..+...+...+.+
T Consensus 458 sFsPd~r--fLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~G--yYFatas~D~tArLWs~d~~~PlRifag 533 (707)
T KOG0263|consen 458 SFSPDRR--FLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRG--YYFATASHDQTARLWSTDHNKPLRIFAG 533 (707)
T ss_pred eeccccc--ceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCc--eEEEecCCCceeeeeecccCCchhhhcc
Confidence 9999999 89999999999999999999999999999999999999864 9999999999999999999999999999
Q ss_pred CCCcEEEEEEccCCCEEEEeccCCCCCCeEEEEeCCCCceeEEeecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q 001477 540 PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN 619 (1071)
Q Consensus 540 ~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 619 (1071)
|-..|.|+.|+|+..|+++|+. |.++++||+.+|..++.|.||.+ +|.+++|+|+|.+|++|+.||.|.+||+.+
T Consensus 534 hlsDV~cv~FHPNs~Y~aTGSs----D~tVRlWDv~~G~~VRiF~GH~~-~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~ 608 (707)
T KOG0263|consen 534 HLSDVDCVSFHPNSNYVATGSS----DRTVRLWDVSTGNSVRIFTGHKG-PVTALAFSPCGRYLASGDEDGLIKIWDLAN 608 (707)
T ss_pred cccccceEEECCcccccccCCC----CceEEEEEcCCCcEEEEecCCCC-ceEEEEEcCCCceEeecccCCcEEEEEcCC
Confidence 9999999999999999999986 88899999999999999999988 999999999999999999999999999999
Q ss_pred CceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCh
Q 001477 620 MNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1071)
Q Consensus 620 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~ 664 (1071)
++++..+..| ...|.++.|+.+|..||+|+.|++|++||+...
T Consensus 609 ~~~v~~l~~H--t~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 609 GSLVKQLKGH--TGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred Ccchhhhhcc--cCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 9999999877 458999999999999999999999999998654
No 52
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=100.00 E-value=3.7e-31 Score=274.61 Aligned_cols=653 Identities=16% Similarity=0.200 Sum_probs=360.0
Q ss_pred eEEeec-CCCCeEEEEeecCCCeEEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeEEEEC
Q 001477 339 VVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 417 (1071)
Q Consensus 339 ~~~~~~-h~~~V~~~~fsp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~s 417 (1071)
-+..+. |.+.|+.+.|||-...|||+||.|..|+||.+..|-... ...+...+.+..-.|-|+.|.
T Consensus 71 ~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~-------------LSape~~~g~~~~~vE~l~fH 137 (1012)
T KOG1445|consen 71 DIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQK-------------LSAPEIDVGGGNVIVECLRFH 137 (1012)
T ss_pred ccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccc-------------cCCcceeecCCceEEEEeecc
Confidence 344455 999999999999777799999999999999998542211 011222244556678999999
Q ss_pred CCCCEEEEEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccC-CceeEEecCC
Q 001477 418 PDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA-GRKQYTFEGH 496 (1071)
Q Consensus 418 pd~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~h 496 (1071)
|...-|...+..|.++|||+.+++.+. ++.+|...|.++.|+.||+ ++++.+.|+.|+|||.+. ++.++..++|
T Consensus 138 pTaDgil~s~a~g~v~i~D~stqk~~~---el~~h~d~vQSa~WseDG~--llatscKdkqirifDPRa~~~piQ~te~H 212 (1012)
T KOG1445|consen 138 PTADGILASGAHGSVYITDISTQKTAV---ELSGHTDKVQSADWSEDGK--LLATSCKDKQIRIFDPRASMEPIQTTEGH 212 (1012)
T ss_pred cCcCceEEeccCceEEEEEcccCceee---cccCCchhhhccccccCCc--eEeeecCCcceEEeCCccCCCcccccccc
Confidence 977766666688999999999988665 7889999999999999999 999999999999999985 6788888888
Q ss_pred CCC-eEEEEecccCCccEEEEEecC----CeEEEEEcCCCceeE-EecCC-CCcEEEEEEccCCCEEEEeccCCCCCCeE
Q 001477 497 EAP-VYSVCPHHKESIQFIFSTAID----GKIKAWLYDYLGSRV-DYDAP-GNWCTMMAYSADGTRLFSCGTSKEGESHL 569 (1071)
Q Consensus 497 ~~~-v~~i~~~~~~~~~~l~s~~~d----~~i~vwd~~~~~~~~-~~~~~-~~~i~~~~~s~~~~~l~~~~~~~d~~~~i 569 (1071)
.+. -..+.|..+ -..|++.+.+ ..|++||.+...... .+... ...|.---|.||.++++.++. ++.++
T Consensus 213 ~~~rdsRv~w~Gn--~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaGK---G~~~l 287 (1012)
T KOG1445|consen 213 GGMRDSRVLWAGN--WERLISTGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAGK---GTNKL 287 (1012)
T ss_pred ccchhheeeeccc--hhhhhhcccchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEecC---CcceE
Confidence 764 223445433 2466666654 458999988754432 22221 224555568999999888763 68888
Q ss_pred EEEeCCCCceeE--EeecccccceeEEEEeCCCCEEEEEe-CCCc-----------------------------------
Q 001477 570 VEWNESEGAIKR--TYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQ----------------------------------- 611 (1071)
Q Consensus 570 ~iwd~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~----------------------------------- 611 (1071)
..+.+...++.. .+...........+.-|....-+-.+ -+..
T Consensus 288 ~~lE~~d~qPyLs~v~~~tle~~~~GA~lvpkral~VM~~EV~rvlQLt~~~ivPi~y~VPRksyrdFH~DLfPeT~G~~ 367 (1012)
T KOG1445|consen 288 FMLEMQDRQPYLSHVFELTLEEQTLGATLVPKRALHVMDGEVDRVLQLTKSSIVPIPYIVPRKSYRDFHSDLFPETRGAE 367 (1012)
T ss_pred EEEEecCCCcchhhhhhhcchhhhccceecchhhhhhcchhhhhheecccCceeecccccchhhhhhhhhhhCccccCCc
Confidence 888876544221 11100000001111111110000000 0000
Q ss_pred ----EEEEeCCCCceeEEEe------cCC----------------CCCCcceEEEcCCCCEEEEEeCCCcEEE---EEcC
Q 001477 612 ----IKFWDMDNMNMLTTVD------ADG----------------GLPASPRLRFNKEGSLLAVTTSDNGIKI---LANS 662 (1071)
Q Consensus 612 ----i~iwd~~~~~~~~~~~------~~~----------------~~~~v~~~~~s~~~~~l~~~~~dg~v~i---w~~~ 662 (1071)
-.-|=--+.+.+..+. .|+ ....|......|...-=...+.|+.--+ =.+.
T Consensus 368 p~~~ageWlnG~Nq~vqKvSl~Pa~r~h~~~pp~~~P~p~~a~t~sf~~v~~ppaaP~~~~n~~~~~~~~Pd~~~qpaV~ 447 (1012)
T KOG1445|consen 368 PGCTAGEWLNGTNQVVQKVSLAPAQRSHSPPPPEPVPTPKVAQTPSFVPVPTPPAAPRPMSNNNSSSNNVPDVQEQPAVP 447 (1012)
T ss_pred cCcCccceecCccccccccccCchhccCCCCCCCCCCCcccccCCCCccccCCCCCCCccccccccccCCCccccCCCcC
Confidence 0001000111111110 000 0000000000010000000000000000 0000
Q ss_pred ChhhhhhhhcCC---------------------ccccccCCCCCCCCCCccccccCCCCccccccCCCCCCCCCCCCccc
Q 001477 663 DGVRLLRMLEGR---------------------AMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVS 721 (1071)
Q Consensus 663 ~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (1071)
.+ ...+.+... +..+..+...++....+.-.++ ....+..-.+.|..+ ...|.++
T Consensus 448 ~~-~e~r~l~~~~~E~~~g~~~~~~dad~~~g~sS~~s~~~~~~~~~~kP~S~pl--t~~~s~~s~~~P~~~-ksvPe~~ 523 (1012)
T KOG1445|consen 448 KK-EEVRELDYRPYEKENGVHTPNADADSTQGNSSPISTISPEPVTIVKPASTPL--TDSVSTPSVVGPAFG-KSVPEQP 523 (1012)
T ss_pred cc-hhhhhhcccccccccCccCCCcccccccCCCCCccccCCCcccccCCCCccc--ccccccccccCcccc-ccCCCCC
Confidence 00 001111000 0000000000000000000000 000000000111110 0111111
Q ss_pred ccccC----CCCcccccccccccccccCccceeccCCCCCccc------ce--eeecCCCcCCCceEEEEEecccchhh-
Q 001477 722 ISSLG----TIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQ------IK--ALRLPDSIAASKVVRLIYTNSGLSLL- 788 (1071)
Q Consensus 722 ~~~~~----~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~------~~--~~~~~~~~~~~~v~~l~~s~~g~~l~- 788 (1071)
...+. ..+.........-..+--|.+.-|.-..+..... .+ ...+|+ ... -|..+.++++
T Consensus 524 ~~~~g~~~sat~~v~~s~s~r~~s~v~G~iSKFRH~~Gt~ghks~hi~NLrnln~~~Pg-----Esn--Gfcan~~rvAV 596 (1012)
T KOG1445|consen 524 PVNFGKPISATNRVPLSQSVRPKSCVVGQISKFRHVDGTQGHKSAHISNLRNLNTRLPG-----ESN--GFCANNKRVAV 596 (1012)
T ss_pred CcccCCCccccccccccccccccceeeccchheeeccCccccchhhhhhhhcccccCCC-----ccC--ceeeccceEEE
Confidence 11110 0000000000000000012222222221111110 00 111121 111 2333334333
Q ss_pred -hccccceeEEEecccccCCCCCccceeecceeccCCCCCccccccCCCCCCCCCeEEEEEec-CCcEEEEEe-CCeEEE
Q 001477 789 -ALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK-NDSYVMSAS-GGKVSL 865 (1071)
Q Consensus 789 -~~~~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~v~~s~-d~~~la~~~-dg~i~v 865 (1071)
..+..|.|-||++......|+|.+-.- .. ...|+.+.|.| |...||++. ||.|++
T Consensus 597 PL~g~gG~iai~el~~PGrLPDgv~p~l---------------------~N-gt~vtDl~WdPFD~~rLAVa~ddg~i~l 654 (1012)
T KOG1445|consen 597 PLAGSGGVIAIYELNEPGRLPDGVMPGL---------------------FN-GTLVTDLHWDPFDDERLAVATDDGQINL 654 (1012)
T ss_pred EecCCCceEEEEEcCCCCCCCccccccc---------------------cc-CceeeecccCCCChHHeeecccCceEEE
Confidence 345678999999887766666654321 12 67799999999 778898888 899999
Q ss_pred EECCCC-------eEEEEEeCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEccCCeEEEEecCcCCCeeEEEEcCCCCE
Q 001477 866 FNMMTF-------KVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNA 938 (1071)
Q Consensus 866 wd~~~~-------~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~~~v~~l~~s~d~~~ 938 (1071)
|.+..+ +.-..+..|...|+++.|+|--...||+++.|-+|++||+.+++....+.+|.+.|..++|||||+.
T Consensus 655 Wr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~ 734 (1012)
T KOG1445|consen 655 WRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRR 734 (1012)
T ss_pred EEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcc
Confidence 998753 3456688899999999999977789999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCcEEEEECCCCceeeeeeecCCCCCCCCCCCceEEEEccCCCEEEE-E----ECCeEEEEeC---CCCceeec
Q 001477 939 LVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-V----HESQISVYDS---KLECSRSW 1010 (1071)
Q Consensus 939 l~s~~~d~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~----~d~~i~vwd~---~~~~~~~~ 1010 (1071)
+||.+.||+|++|+..+++.. +....+... ..-..+.|.-||+++++ | +++.|.+||. .+..+...
T Consensus 735 ~AtVcKDg~~rVy~Prs~e~p----v~Eg~gpvg--tRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~ 808 (1012)
T KOG1445|consen 735 IATVCKDGTLRVYEPRSREQP----VYEGKGPVG--TRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQ 808 (1012)
T ss_pred eeeeecCceEEEeCCCCCCCc----cccCCCCcc--CcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceee
Confidence 999999999999999887643 223232221 34467899999999987 4 3678999998 22222211
Q ss_pred CCCCCCCCCeeEEEEecCCcE-EEEEeCCCeEEEEEcCCCe-EEEEe
Q 001477 1011 SPKDALPAPISSAIYSCDGLL-VYAGFCDGAIGVFDAETLR-FRCRI 1055 (1071)
Q Consensus 1011 ~~~~~h~~~v~~~~~s~dg~~-l~t~~~Dg~i~vwd~~~~~-~~~~~ 1055 (1071)
...- ...+.--.+.+|... +++|-.|..|++|++.--. +++.+
T Consensus 809 ~lDv--aps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~esPy~lpl 853 (1012)
T KOG1445|consen 809 VLDV--APSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYESPYLLPL 853 (1012)
T ss_pred eecc--cCccccccccCCCceEEEecCCCceEEEEEecCCCceeeec
Confidence 1000 111122234456554 5688899999999985443 44433
No 53
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=4.5e-33 Score=281.87 Aligned_cols=292 Identities=16% Similarity=0.264 Sum_probs=248.6
Q ss_pred ceeeEEeec-CCCCeEEEEeec-CCCeEEEEEcCCCeEEEEecCC-CcccccccceeecccccccchhhhhcccCCCCee
Q 001477 336 TKTVVRTLN-QGSNVMSMDFHP-QQQTILLVGTNVGDISLWEVGS-RERLAHKPFKVWDISAASMPLQNALLNDAAISVN 412 (1071)
Q Consensus 336 ~~~~~~~~~-h~~~V~~~~fsp-~g~~lla~gs~dg~i~iwd~~~-~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~ 412 (1071)
|+..+.++. |...|+++.|.| .+ .||++|+.|+.|+||++.. ++++++ +.+|..+|.
T Consensus 203 Pkk~~~~~~gH~kgvsai~~fp~~~-hLlLS~gmD~~vklW~vy~~~~~lrt-------------------f~gH~k~Vr 262 (503)
T KOG0282|consen 203 PKKLSHNLSGHTKGVSAIQWFPKKG-HLLLSGGMDGLVKLWNVYDDRRCLRT-------------------FKGHRKPVR 262 (503)
T ss_pred cHhheeeccCCccccchhhhcccee-eEEEecCCCceEEEEEEecCcceehh-------------------hhcchhhhh
Confidence 566677777 999999999999 66 5999999999999999976 666654 789999999
Q ss_pred EEEECCCCCEEEEEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccCCceeEE
Q 001477 413 RCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT 492 (1071)
Q Consensus 413 ~~~~spd~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 492 (1071)
+++|+++|..+.+++.|+.+++||+++|+++. .+. ....++|+.|.||+.+ .+++|+.|+.|+.||+++++.++.
T Consensus 263 d~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~---~f~-~~~~~~cvkf~pd~~n-~fl~G~sd~ki~~wDiRs~kvvqe 337 (503)
T KOG0282|consen 263 DASFNNCGTSFLSASFDRFLKLWDTETGQVLS---RFH-LDKVPTCVKFHPDNQN-IFLVGGSDKKIRQWDIRSGKVVQE 337 (503)
T ss_pred hhhccccCCeeeeeecceeeeeeccccceEEE---EEe-cCCCceeeecCCCCCc-EEEEecCCCcEEEEeccchHHHHH
Confidence 99999999999999999999999999998765 332 3446899999999955 899999999999999999999999
Q ss_pred ecCCCCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCceeEE-ecCCCCcEEEEEEccCCCEEEEeccCCCCCCeEEE
Q 001477 493 FEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD-YDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVE 571 (1071)
Q Consensus 493 ~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~-~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~i 571 (1071)
+..|-+.|..+.|.+.+ ..+++.+.|+.+++|+.+..-.... .........++..+|+++++++-+. ++.|.+
T Consensus 338 Yd~hLg~i~~i~F~~~g--~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~----dN~i~i 411 (503)
T KOG0282|consen 338 YDRHLGAILDITFVDEG--RRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSM----DNYIAI 411 (503)
T ss_pred HHhhhhheeeeEEccCC--ceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhcc----CceEEE
Confidence 99999999999998755 8999999999999999987665543 3334457789999999999998775 778999
Q ss_pred EeCCCC---ceeEEeeccccc-ceeEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcC-CCCE
Q 001477 572 WNESEG---AIKRTYSGFRKR-SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK-EGSL 646 (1071)
Q Consensus 572 wd~~~~---~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~ 646 (1071)
+..... ...+.|.+|... --..+.|||||.+|++|+.||.+.+||.++-+++..++.|.. .+..+.|+| ....
T Consensus 412 fs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~--~ci~v~wHP~e~Sk 489 (503)
T KOG0282|consen 412 FSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQ--PCIGVDWHPVEPSK 489 (503)
T ss_pred EecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCc--ceEEEEecCCCcce
Confidence 986532 233456676432 234588999999999999999999999999999999987744 789999999 5668
Q ss_pred EEEEeCCCcEEEEE
Q 001477 647 LAVTTSDNGIKILA 660 (1071)
Q Consensus 647 l~~~~~dg~v~iw~ 660 (1071)
+|+++.||.|++|+
T Consensus 490 vat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 490 VATCGWDGLIKIWD 503 (503)
T ss_pred eEecccCceeEecC
Confidence 99999999999996
No 54
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=3.5e-33 Score=276.02 Aligned_cols=240 Identities=17% Similarity=0.254 Sum_probs=214.1
Q ss_pred CCCeeEEEECCCCCEEEEEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccCC
Q 001477 408 AISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG 487 (1071)
Q Consensus 408 ~~~v~~~~~spd~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~ 487 (1071)
+.+|..+.|.|+|+.|++|+..|...+|+..+-... ..+++|..+|+++.|+++|. .+++|+.+|.|++|+..-.
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFE---tilQaHDs~Vr~m~ws~~g~--wmiSgD~gG~iKyWqpnmn 170 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFE---TILQAHDSPVRTMKWSHNGT--WMISGDKGGMIKYWQPNMN 170 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceeeHH---HHhhhhcccceeEEEccCCC--EEEEcCCCceEEecccchh
Confidence 457999999999999999999999999997543221 15668999999999999999 8999999999999996544
Q ss_pred ceeEEecCC-CCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCceeEEecCCCCcEEEEEEccCCCEEEEeccCCCCC
Q 001477 488 RKQYTFEGH-EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGE 566 (1071)
Q Consensus 488 ~~~~~~~~h-~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~ 566 (1071)
. ++.+.+| ...|.+++|+|.. ..+++++.||+|+|||.........+.+|+-.|.++.|+|.-..+++++. |
T Consensus 171 n-Vk~~~ahh~eaIRdlafSpnD--skF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgsk----D 243 (464)
T KOG0284|consen 171 N-VKIIQAHHAEAIRDLAFSPND--SKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSK----D 243 (464)
T ss_pred h-hHHhhHhhhhhhheeccCCCC--ceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccC----C
Confidence 3 4455554 5999999999954 79999999999999999999998899999999999999999999999874 6
Q ss_pred CeEEEEeCCCCceeEEeecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcC-CCC
Q 001477 567 SHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK-EGS 645 (1071)
Q Consensus 567 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~ 645 (1071)
..|++||.++|.++.++.+|.. .|..+.|+|++++|+++|.|..++++|+++.+.+..+.+|.. .|+++.|+| ...
T Consensus 244 nlVKlWDprSg~cl~tlh~HKn-tVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkk--dv~~~~WhP~~~~ 320 (464)
T KOG0284|consen 244 NLVKLWDPRSGSCLATLHGHKN-TVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKK--DVTSLTWHPLNES 320 (464)
T ss_pred ceeEeecCCCcchhhhhhhccc-eEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchh--hheeecccccccc
Confidence 6899999999999999999988 899999999999999999999999999999888888887654 799999999 677
Q ss_pred EEEEEeCCCcEEEEEcC
Q 001477 646 LLAVTTSDNGIKILANS 662 (1071)
Q Consensus 646 ~l~~~~~dg~v~iw~~~ 662 (1071)
+|.+|+.||.|..|.+.
T Consensus 321 lftsgg~Dgsvvh~~v~ 337 (464)
T KOG0284|consen 321 LFTSGGSDGSVVHWVVG 337 (464)
T ss_pred ceeeccCCCceEEEecc
Confidence 89999999999999875
No 55
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=6.4e-33 Score=267.60 Aligned_cols=273 Identities=21% Similarity=0.314 Sum_probs=234.7
Q ss_pred CCCeEEEEeecCCCeEEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeEEEECCCCCEEEE
Q 001477 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1071)
Q Consensus 346 ~~~V~~~~fsp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~la~ 425 (1071)
..+|.|+.+..+ .+++|..|++|+|||..+..++.. +.||++.|.|+.| |.+.|++
T Consensus 197 skgVYClQYDD~---kiVSGlrDnTikiWD~n~~~c~~~-------------------L~GHtGSVLCLqy--d~rviis 252 (499)
T KOG0281|consen 197 SKGVYCLQYDDE---KIVSGLRDNTIKIWDKNSLECLKI-------------------LTGHTGSVLCLQY--DERVIVS 252 (499)
T ss_pred CCceEEEEecch---hhhcccccCceEEeccccHHHHHh-------------------hhcCCCcEEeeec--cceEEEe
Confidence 468999999633 478999999999999998877653 8899999999999 6779999
Q ss_pred EeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccCCc---eeEEecCCCCCeEE
Q 001477 426 AFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR---KQYTFEGHEAPVYS 502 (1071)
Q Consensus 426 ~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~---~~~~~~~h~~~v~~ 502 (1071)
|+.|.+|+|||+++++++. ++-+|...|..+.|+.. +++|++.|.++.+||+.+.. +.+.+.||...|+.
T Consensus 253 GSSDsTvrvWDv~tge~l~---tlihHceaVLhlrf~ng----~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNv 325 (499)
T KOG0281|consen 253 GSSDSTVRVWDVNTGEPLN---TLIHHCEAVLHLRFSNG----YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNV 325 (499)
T ss_pred cCCCceEEEEeccCCchhh---HHhhhcceeEEEEEeCC----EEEEecCCceeEEEeccCchHHHHHHHHhhhhhheee
Confidence 9999999999999999887 77899999999999742 79999999999999998765 33567899999999
Q ss_pred EEecccCCccEEEEEecCCeEEEEEcCCCceeEEecCCCCcEEEEEEccCCCEEEEeccCCCCCCeEEEEeCCCCceeEE
Q 001477 503 VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRT 582 (1071)
Q Consensus 503 i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~ 582 (1071)
+.|+. +++++++.|.+|++|++.+.+.+..+.+|...|-|+.+ .|+++++|+. |.+|++||+..|.+++.
T Consensus 326 Vdfd~----kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSS----DntIRlwdi~~G~cLRv 395 (499)
T KOG0281|consen 326 VDFDD----KYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSS----DNTIRLWDIECGACLRV 395 (499)
T ss_pred ecccc----ceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCC----CceEEEEeccccHHHHH
Confidence 99863 69999999999999999999999999999999988876 4788888875 88899999999999999
Q ss_pred eecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeE-------EEecCCCCCCcceEEEcCCCCEEEEEeCCCc
Q 001477 583 YSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLT-------TVDADGGLPASPRLRFNKEGSLLAVTTSDNG 655 (1071)
Q Consensus 583 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-------~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 655 (1071)
++||.. -|.++.|. .+.+++|+.||+|++||+..+.... ......+.+.|..+.|. ...+++++.|.+
T Consensus 396 LeGHEe-LvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHddt 470 (499)
T KOG0281|consen 396 LEGHEE-LVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD--EFQIISSSHDDT 470 (499)
T ss_pred HhchHH-hhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeec--ceEEEeccCCCe
Confidence 999998 89999996 4789999999999999998764331 11222333468888884 567889999999
Q ss_pred EEEEEcCCh
Q 001477 656 IKILANSDG 664 (1071)
Q Consensus 656 v~iw~~~~~ 664 (1071)
|.+||+.++
T Consensus 471 ILiWdFl~~ 479 (499)
T KOG0281|consen 471 ILIWDFLNG 479 (499)
T ss_pred EEEEEcCCC
Confidence 999999877
No 56
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.5e-30 Score=243.96 Aligned_cols=242 Identities=17% Similarity=0.302 Sum_probs=206.3
Q ss_pred cccCCCCeeEEEECCC-CCEEEEEeCCCeEEEEEecCCCccceeeEe-ecccCCEEEEEEecCCCceEEEEEeCCCcEEE
Q 001477 404 LNDAAISVNRCVWGPD-GLMLGVAFSKHIVHLYTYNPTGELRQHLEI-DAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKV 481 (1071)
Q Consensus 404 ~~~h~~~v~~~~~spd-~~~la~~~~dg~i~iwd~~~~~~~~~~~~~-~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~i 481 (1071)
+.+|.+.+..++|+|- |..||+|+.|..|++|+...+........+ .+|...|++++|+|.|+ +|+++|.|.++.|
T Consensus 10 ~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~--~La~aSFD~t~~I 87 (312)
T KOG0645|consen 10 LSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGR--YLASASFDATVVI 87 (312)
T ss_pred ecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCc--EEEEeeccceEEE
Confidence 6789999999999998 999999999999999999864444333233 37999999999999999 8999999999999
Q ss_pred EEccCC--ceeEEecCCCCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCce---eEEecCCCCcEEEEEEccCCCEE
Q 001477 482 WDVVAG--RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS---RVDYDAPGNWCTMMAYSADGTRL 556 (1071)
Q Consensus 482 wd~~~~--~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~---~~~~~~~~~~i~~~~~s~~~~~l 556 (1071)
|.-..+ +++.++.||...|.+++|++++ .+|++++.|+.|-+|.+..... ...+..|...|..+.|+|....|
T Consensus 88 w~k~~~efecv~~lEGHEnEVK~Vaws~sG--~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL 165 (312)
T KOG0645|consen 88 WKKEDGEFECVATLEGHENEVKCVAWSASG--NYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLL 165 (312)
T ss_pred eecCCCceeEEeeeeccccceeEEEEcCCC--CEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCccee
Confidence 975543 6788999999999999999755 8999999999999999885443 44788899999999999999999
Q ss_pred EEeccCCCCCCeEEEEeCC---CCceeEEeecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCC
Q 001477 557 FSCGTSKEGESHLVEWNES---EGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLP 633 (1071)
Q Consensus 557 ~~~~~~~d~~~~i~iwd~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 633 (1071)
++++. |++|++|+-. .-.++.++.+|.. .|.+++|++.|..+++++.|++++||...+. +. ..+..
T Consensus 166 ~S~SY----DnTIk~~~~~~dddW~c~~tl~g~~~-TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~-----~~-~~~sr 234 (312)
T KOG0645|consen 166 FSCSY----DNTIKVYRDEDDDDWECVQTLDGHEN-TVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD-----LS-GMHSR 234 (312)
T ss_pred EEecc----CCeEEEEeecCCCCeeEEEEecCccc-eEEEEEecCCCceEEEecCCcceEeeeeccC-----cc-hhccc
Confidence 99997 8889999876 3457889999988 8999999999999999999999999986521 21 12234
Q ss_pred CcceEEEcCCCCEEEEEeCCCcEEEEEcC
Q 001477 634 ASPRLRFNKEGSLLAVTTSDNGIKILANS 662 (1071)
Q Consensus 634 ~v~~~~~s~~~~~l~~~~~dg~v~iw~~~ 662 (1071)
.+..+.|. ...|++++.|+.|++|.-.
T Consensus 235 ~~Y~v~W~--~~~IaS~ggD~~i~lf~~s 261 (312)
T KOG0645|consen 235 ALYDVPWD--NGVIASGGGDDAIRLFKES 261 (312)
T ss_pred ceEeeeec--ccceEeccCCCEEEEEEec
Confidence 67888998 4589999999999999754
No 57
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=2.1e-32 Score=277.04 Aligned_cols=292 Identities=19% Similarity=0.347 Sum_probs=249.9
Q ss_pred eeeEeecccCCEEEEEEec-CCCceEEEEEeCCCcEEEEEccC-CceeEEecCCCCCeEEEEecccCCccEEEEEecCCe
Q 001477 445 QHLEIDAHVGGVNDIAFAH-PNKQLCIVTCGDDKMIKVWDVVA-GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGK 522 (1071)
Q Consensus 445 ~~~~~~~h~~~v~~~~~s~-d~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~ 522 (1071)
....+.+|...|+++.|.| .+. +|++++.|+.|+||++.. ++++++|.+|..+|..++|+..+ ..+++++.|+.
T Consensus 206 ~~~~~~gH~kgvsai~~fp~~~h--LlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g--~~fLS~sfD~~ 281 (503)
T KOG0282|consen 206 LSHNLSGHTKGVSAIQWFPKKGH--LLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCG--TSFLSASFDRF 281 (503)
T ss_pred heeeccCCccccchhhhccceee--EEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccC--Ceeeeeeccee
Confidence 3447889999999999999 555 899999999999999987 89999999999999999999755 89999999999
Q ss_pred EEEEEcCCCceeEEecCCCCcEEEEEEccCC-CEEEEeccCCCCCCeEEEEeCCCCceeEEeecccccceeEEEEeCCCC
Q 001477 523 IKAWLYDYLGSRVDYDAPGNWCTMMAYSADG-TRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRN 601 (1071)
Q Consensus 523 i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 601 (1071)
|++||+++++....+.. +..+.|+.|.||+ +.+++|+. ++.|+.||+++++.++.+..|-+ .|..+.|-++|.
T Consensus 282 lKlwDtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~s----d~ki~~wDiRs~kvvqeYd~hLg-~i~~i~F~~~g~ 355 (503)
T KOG0282|consen 282 LKLWDTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGS----DKKIRQWDIRSGKVVQEYDRHLG-AILDITFVDEGR 355 (503)
T ss_pred eeeeccccceEEEEEec-CCCceeeecCCCCCcEEEEecC----CCcEEEEeccchHHHHHHHhhhh-heeeeEEccCCc
Confidence 99999999999887764 4578899999999 66667765 78899999999999999998887 899999999999
Q ss_pred EEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCChhhh--hhhhcCCccccc
Q 001477 602 RFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRL--LRMLEGRAMDKN 679 (1071)
Q Consensus 602 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~--~~~~~~~~~~~~ 679 (1071)
++++.++|++++||+....-++....... .....++..+|++.+++.-+.|+.|.++.+....+. .+.+.+|
T Consensus 356 rFissSDdks~riWe~~~~v~ik~i~~~~-~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh----- 429 (503)
T KOG0282|consen 356 RFISSSDDKSVRIWENRIPVPIKNIADPE-MHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGH----- 429 (503)
T ss_pred eEeeeccCccEEEEEcCCCccchhhcchh-hccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcce-----
Confidence 99999999999999999887766554322 236789999999999999999999999975433100 0001110
Q ss_pred cCCCCCCCCCCccccccCCCCccccccCCCCCCCCCCCCcccccccCCCCcccccccccccccccCccceeccCCCCCcc
Q 001477 680 RCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPS 759 (1071)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~ 759 (1071)
T Consensus 430 -------------------------------------------------------------------------------- 429 (503)
T KOG0282|consen 430 -------------------------------------------------------------------------------- 429 (503)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceeeecCCCcCCCceEEEEEecccchhhhccccceeEEEecccccCCCCCccceeecceeccCCCCCccccccCCCCCC
Q 001477 760 QIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPT 839 (1071)
Q Consensus 760 ~~~~~~~~~~~~~~~v~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 839 (1071)
.-
T Consensus 430 -----------------------------------------------------------------------------~v- 431 (503)
T KOG0282|consen 430 -----------------------------------------------------------------------------SV- 431 (503)
T ss_pred -----------------------------------------------------------------------------ec-
Confidence 01
Q ss_pred CCCeEEEEEecCCcEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEE
Q 001477 840 EESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYN 910 (1071)
Q Consensus 840 ~~~v~~v~~s~d~~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd 910 (1071)
.+.-..+.|||||++|++|+ ||.+.+||.++-+++..+.+|++++..+.|+|.....+|+++.||.|++|+
T Consensus 432 aGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 432 AGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred cCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 34456789999999999999 999999999999999999999999999999998888999999999999996
No 58
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=1.4e-30 Score=282.07 Aligned_cols=282 Identities=24% Similarity=0.409 Sum_probs=250.6
Q ss_pred CCCCeEEEEeecCCCeEEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeEEEECCCCCEEE
Q 001477 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1071)
Q Consensus 345 h~~~V~~~~fsp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~la 424 (1071)
|.++|++++|+|+++ ++++|+.||.|.+|++.+++.... +..|...+..+.|+|++++++
T Consensus 8 h~~~i~~~~~~~~~~-~l~~~~~~g~i~i~~~~~~~~~~~-------------------~~~~~~~i~~~~~~~~~~~l~ 67 (289)
T cd00200 8 HTGGVTCVAFSPDGK-LLATGSGDGTIKVWDLETGELLRT-------------------LKGHTGPVRDVAASADGTYLA 67 (289)
T ss_pred cCCCEEEEEEcCCCC-EEEEeecCcEEEEEEeeCCCcEEE-------------------EecCCcceeEEEECCCCCEEE
Confidence 889999999999997 788898999999999987764332 457888999999999999999
Q ss_pred EEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccCCceeEEecCCCCCeEEEE
Q 001477 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 504 (1071)
Q Consensus 425 ~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~ 504 (1071)
+++.||.|++|++.+++... .+..|...|.++.|+++++ ++++++.|+.|++||+.+++....+..|...+.+++
T Consensus 68 ~~~~~~~i~i~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~ 142 (289)
T cd00200 68 SGSSDKTIRLWDLETGECVR---TLTGHTSYVSSVAFSPDGR--ILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVA 142 (289)
T ss_pred EEcCCCeEEEEEcCcccceE---EEeccCCcEEEEEEcCCCC--EEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEE
Confidence 99999999999999876554 6678888999999999977 788888899999999999999999999999999999
Q ss_pred ecccCCccEEEEEecCCeEEEEEcCCCceeEEecCCCCcEEEEEEccCCCEEEEeccCCCCCCeEEEEeCCCCceeEEee
Q 001477 505 PHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS 584 (1071)
Q Consensus 505 ~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~ 584 (1071)
|+|++ .++++++.|+.|++||++..+....+..+...+.++.|+|+++.+++++. ++.+.+||+.+++.+..+.
T Consensus 143 ~~~~~--~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----~~~i~i~d~~~~~~~~~~~ 216 (289)
T cd00200 143 FSPDG--TFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS----DGTIKLWDLSTGKCLGTLR 216 (289)
T ss_pred EcCcC--CEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecC----CCcEEEEECCCCceecchh
Confidence 99863 78888888999999999988888788888889999999999999998874 7789999999999888887
Q ss_pred cccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEE
Q 001477 585 GFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILA 660 (1071)
Q Consensus 585 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~ 660 (1071)
.+.. .+.++.|+|++.++++++.||.|++||+.+++....+..+. ..+.+++|+|++..+++++.||.+++|+
T Consensus 217 ~~~~-~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 217 GHEN-GVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHT--NSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred hcCC-ceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccC--CcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 7766 89999999998888888889999999999988888887443 4799999999999999999999999995
No 59
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.98 E-value=2.7e-30 Score=290.97 Aligned_cols=258 Identities=24% Similarity=0.396 Sum_probs=229.2
Q ss_pred CCCCeeEEEECCCCCEEEEEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEc-c
Q 001477 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDV-V 485 (1071)
Q Consensus 407 h~~~v~~~~~spd~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~-~ 485 (1071)
+...|.++.|+++|+.+++++.++.+++|+..+... .....+.+|...|.+++|+|+++ ++++++.|++|++||+ .
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-~~~~~l~~h~~~v~~~~fs~d~~--~l~s~s~D~tiriwd~~~ 234 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-NLLRELSGHTRGVSDVAFSPDGS--YLLSGSDDKTLRIWDLKD 234 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc-hhhccccccccceeeeEECCCCc--EEEEecCCceEEEeeccC
Confidence 478899999999999999999999999999977662 12225679999999999999999 8999999999999999 5
Q ss_pred CCceeEEecCCCCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCceeEEecCCCCcEEEEEEccCCCEEEEeccCCCC
Q 001477 486 AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEG 565 (1071)
Q Consensus 486 ~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~ 565 (1071)
.+..++++.+|...|++++|+|.+ +++++|+.|++|++||+++++....+..|...|++++|+++++++++++.
T Consensus 235 ~~~~~~~l~gH~~~v~~~~f~p~g--~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~---- 308 (456)
T KOG0266|consen 235 DGRNLKTLKGHSTYVTSVAFSPDG--NLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASY---- 308 (456)
T ss_pred CCeEEEEecCCCCceEEEEecCCC--CEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCC----
Confidence 568999999999999999999876 89999999999999999999999999999999999999999999999964
Q ss_pred CCeEEEEeCCCCc--eeEEeeccccc-ceeEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCC-CCcceEEEc
Q 001477 566 ESHLVEWNESEGA--IKRTYSGFRKR-SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGL-PASPRLRFN 641 (1071)
Q Consensus 566 ~~~i~iwd~~~~~--~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~~~~s 641 (1071)
|+.|++||+.++. +...+.++... .+.++.|+|++.++++++.|+.+++||+..+........+... ..+.+...+
T Consensus 309 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (456)
T KOG0266|consen 309 DGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLS 388 (456)
T ss_pred CccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEeccccc
Confidence 8889999999999 56788887775 6999999999999999999999999999999999988877553 234455567
Q ss_pred CCCCEEEEEeCCCcEEEEEcCChhhhhhhhcCC
Q 001477 642 KEGSLLAVTTSDNGIKILANSDGVRLLRMLEGR 674 (1071)
Q Consensus 642 ~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~ 674 (1071)
+.+.++++|+.|+.|.+|+..++ ..+..+.+|
T Consensus 389 ~~~~~i~sg~~d~~v~~~~~~s~-~~~~~l~~h 420 (456)
T KOG0266|consen 389 TGGKLIYSGSEDGSVYVWDSSSG-GILQRLEGH 420 (456)
T ss_pred CCCCeEEEEeCCceEEEEeCCcc-chhhhhcCC
Confidence 89999999999999999999886 555555554
No 60
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.2e-30 Score=239.05 Aligned_cols=256 Identities=18% Similarity=0.258 Sum_probs=225.6
Q ss_pred hhhcccCCCCeeEEEECCCCCEEEEEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEE
Q 001477 401 NALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIK 480 (1071)
Q Consensus 401 ~~~~~~h~~~v~~~~~spd~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~ 480 (1071)
..++..|.++|..+.|+-||+|.++++.|.+|++|+...+..++ ++.+|...|.+++.+.|+. .+++|+.|+.+.
T Consensus 10 ~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~lik---tYsghG~EVlD~~~s~Dns--kf~s~GgDk~v~ 84 (307)
T KOG0316|consen 10 LSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIK---TYSGHGHEVLDAALSSDNS--KFASCGGDKAVQ 84 (307)
T ss_pred ceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceee---eecCCCceeeecccccccc--ccccCCCCceEE
Confidence 34478899999999999999999999999999999999998777 8889999999999999998 699999999999
Q ss_pred EEEccCCceeEEecCCCCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCc--eeEEecCCCCcEEEEEEccCCCEEEE
Q 001477 481 VWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLG--SRVDYDAPGNWCTMMAYSADGTRLFS 558 (1071)
Q Consensus 481 iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~--~~~~~~~~~~~i~~~~~s~~~~~l~~ 558 (1071)
+||+.+|+.++.|++|.+.|+.++|+... ..+++|+.|.++++||-++.. ++..+......|.++..+ +..+++
T Consensus 85 vwDV~TGkv~Rr~rgH~aqVNtV~fNees--SVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIva 160 (307)
T KOG0316|consen 85 VWDVNTGKVDRRFRGHLAQVNTVRFNEES--SVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVA 160 (307)
T ss_pred EEEcccCeeeeecccccceeeEEEecCcc--eEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEe
Confidence 99999999999999999999999998654 899999999999999988654 455566666788888775 456777
Q ss_pred eccCCCCCCeEEEEeCCCCceeEEeecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceE
Q 001477 559 CGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRL 638 (1071)
Q Consensus 559 ~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~ 638 (1071)
++. ||+++.||++.|+....+-++ +|++++|+++++..++++.|+++++.|-.+|+++....+|.....-..+
T Consensus 161 GS~----DGtvRtydiR~G~l~sDy~g~---pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc 233 (307)
T KOG0316|consen 161 GSV----DGTVRTYDIRKGTLSSDYFGH---PITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDC 233 (307)
T ss_pred ecc----CCcEEEEEeecceeehhhcCC---cceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeee
Confidence 775 888999999999988777665 7999999999999999999999999999999999999988776666778
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEcCChhhhhhhhcC
Q 001477 639 RFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEG 673 (1071)
Q Consensus 639 ~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~ 673 (1071)
+++.....+++|++||.|.+||+.+. ..+..+..
T Consensus 234 ~l~qsdthV~sgSEDG~Vy~wdLvd~-~~~sk~~~ 267 (307)
T KOG0316|consen 234 CLNQSDTHVFSGSEDGKVYFWDLVDE-TQISKLSV 267 (307)
T ss_pred eecccceeEEeccCCceEEEEEeccc-eeeeeecc
Confidence 88888899999999999999999887 44433333
No 61
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=3e-29 Score=305.76 Aligned_cols=291 Identities=14% Similarity=0.162 Sum_probs=237.4
Q ss_pred CCCCeEEEEeecCCCeEEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeEEEECC-CCCEE
Q 001477 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP-DGLML 423 (1071)
Q Consensus 345 h~~~V~~~~fsp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~sp-d~~~l 423 (1071)
|.+.|++++|+|+|+ ++|+|+.|+.|+||+......... .. ..+...+ .+...|.+++|+| ++.+|
T Consensus 482 ~~~~V~~i~fs~dg~-~latgg~D~~I~iwd~~~~~~~~~-~~----------~~~~~~~-~~~~~v~~l~~~~~~~~~l 548 (793)
T PLN00181 482 SSNLVCAIGFDRDGE-FFATAGVNKKIKIFECESIIKDGR-DI----------HYPVVEL-ASRSKLSGICWNSYIKSQV 548 (793)
T ss_pred CCCcEEEEEECCCCC-EEEEEeCCCEEEEEECCccccccc-cc----------ccceEEe-cccCceeeEEeccCCCCEE
Confidence 889999999999998 789999999999999864211000 00 0000001 2346799999987 57899
Q ss_pred EEEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEec-CCCceEEEEEeCCCcEEEEEccCCceeEEecCCCCCeEE
Q 001477 424 GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAH-PNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYS 502 (1071)
Q Consensus 424 a~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~-d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~ 502 (1071)
|+++.||+|++||+.+++.+. .+.+|.+.|++++|+| ++. +|++|+.|++|++||+.++..+..+..+ ..|.+
T Consensus 549 as~~~Dg~v~lWd~~~~~~~~---~~~~H~~~V~~l~~~p~~~~--~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~ 622 (793)
T PLN00181 549 ASSNFEGVVQVWDVARSQLVT---EMKEHEKRVWSIDYSSADPT--LLASGSDDGSVKLWSINQGVSIGTIKTK-ANICC 622 (793)
T ss_pred EEEeCCCeEEEEECCCCeEEE---EecCCCCCEEEEEEcCCCCC--EEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEE
Confidence 999999999999999876554 6789999999999997 666 8999999999999999999998888754 67999
Q ss_pred EEecccCCccEEEEEecCCeEEEEEcCCCc-eeEEecCCCCcEEEEEEccCCCEEEEeccCCCCCCeEEEEeCCC-----
Q 001477 503 VCPHHKESIQFIFSTAIDGKIKAWLYDYLG-SRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE----- 576 (1071)
Q Consensus 503 i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~----- 576 (1071)
+.|++. ++.++++|+.||.|++||++... ....+..|...|.++.|. ++.++++++. |+.|++||+..
T Consensus 623 v~~~~~-~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~----D~~ikiWd~~~~~~~~ 696 (793)
T PLN00181 623 VQFPSE-SGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSST----DNTLKLWDLSMSISGI 696 (793)
T ss_pred EEEeCC-CCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEEC----CCEEEEEeCCCCcccc
Confidence 999653 56899999999999999998765 355677888999999997 7788988875 88899999974
Q ss_pred -CceeEEeecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEe-----------cCCCCCCcceEEEcCCC
Q 001477 577 -GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVD-----------ADGGLPASPRLRFNKEG 644 (1071)
Q Consensus 577 -~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----------~~~~~~~v~~~~~s~~~ 644 (1071)
...+..+.+|.. .+.+++|+|++++|++|+.|+.|++|+.....++..+. ...+...|.+++|+|++
T Consensus 697 ~~~~l~~~~gh~~-~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~ 775 (793)
T PLN00181 697 NETPLHSFMGHTN-VKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQS 775 (793)
T ss_pred CCcceEEEcCCCC-CeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCC
Confidence 356788888876 78899999999999999999999999987665443321 12223468999999999
Q ss_pred CEEEEEeCCCcEEEEEc
Q 001477 645 SLLAVTTSDNGIKILAN 661 (1071)
Q Consensus 645 ~~l~~~~~dg~v~iw~~ 661 (1071)
..|++|+.||.|++|++
T Consensus 776 ~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 776 STLVAANSTGNIKILEM 792 (793)
T ss_pred CeEEEecCCCcEEEEec
Confidence 99999999999999985
No 62
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=2.7e-31 Score=256.41 Aligned_cols=232 Identities=16% Similarity=0.311 Sum_probs=206.0
Q ss_pred CCCCeeEEEECCCCCEEEEEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccC
Q 001477 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA 486 (1071)
Q Consensus 407 h~~~v~~~~~spd~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~ 486 (1071)
....|+|+.+ |...+++|..|++|+|||.++-.+++ .+.||.+.|.|+.|. .+ ++++|+.|.+|++||+++
T Consensus 196 ~skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~---~L~GHtGSVLCLqyd--~r--viisGSSDsTvrvWDv~t 266 (499)
T KOG0281|consen 196 NSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLK---ILTGHTGSVLCLQYD--ER--VIVSGSSDSTVRVWDVNT 266 (499)
T ss_pred cCCceEEEEe--cchhhhcccccCceEEeccccHHHHH---hhhcCCCcEEeeecc--ce--EEEecCCCceEEEEeccC
Confidence 3457999999 77899999999999999999887776 788999999999994 44 899999999999999999
Q ss_pred CceeEEecCCCCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCcee---EEecCCCCcEEEEEEccCCCEEEEeccCC
Q 001477 487 GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR---VDYDAPGNWCTMMAYSADGTRLFSCGTSK 563 (1071)
Q Consensus 487 ~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~---~~~~~~~~~i~~~~~s~~~~~l~~~~~~~ 563 (1071)
|+++.++-+|...|..+.|+. .++++++.|.+|.+||+...... ..+.+|...|+.+.|+. +++++++
T Consensus 267 ge~l~tlihHceaVLhlrf~n----g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~--kyIVsAS--- 337 (499)
T KOG0281|consen 267 GEPLNTLIHHCEAVLHLRFSN----GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSAS--- 337 (499)
T ss_pred CchhhHHhhhcceeEEEEEeC----CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc--ceEEEec---
Confidence 999999999999999999973 69999999999999999887643 35678888999999864 5999887
Q ss_pred CCCCeEEEEeCCCCceeEEeecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCC
Q 001477 564 EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKE 643 (1071)
Q Consensus 564 d~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~ 643 (1071)
+|.+|++|+..+++.++++.+|.. .|.|+.+ .++++++|+.|.+|++||+..|.++..+++|.. -|.++.|.
T Consensus 338 -gDRTikvW~~st~efvRtl~gHkR-GIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEe--LvRciRFd-- 409 (499)
T KOG0281|consen 338 -GDRTIKVWSTSTCEFVRTLNGHKR-GIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE--LVRCIRFD-- 409 (499)
T ss_pred -CCceEEEEeccceeeehhhhcccc-cceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHH--hhhheeec--
Confidence 488999999999999999999987 6776655 578999999999999999999999999997765 68999995
Q ss_pred CCEEEEEeCCCcEEEEEcCCh
Q 001477 644 GSLLAVTTSDNGIKILANSDG 664 (1071)
Q Consensus 644 ~~~l~~~~~dg~v~iw~~~~~ 664 (1071)
.+.+++|..||+|++||+..+
T Consensus 410 ~krIVSGaYDGkikvWdl~aa 430 (499)
T KOG0281|consen 410 NKRIVSGAYDGKIKVWDLQAA 430 (499)
T ss_pred CceeeeccccceEEEEecccc
Confidence 568999999999999999876
No 63
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.97 E-value=4.2e-28 Score=271.03 Aligned_cols=305 Identities=16% Similarity=0.261 Sum_probs=250.1
Q ss_pred CCCeEEEEeecCCCeEEEEEc--CCCeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeEEEECCCCCEE
Q 001477 346 GSNVMSMDFHPQQQTILLVGT--NVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLML 423 (1071)
Q Consensus 346 ~~~V~~~~fsp~g~~lla~gs--~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~l 423 (1071)
...|.+++.+|||. .+|+|+ .||.++||+...--. +...++.. .+........|.+.|+|+.|||||++|
T Consensus 13 ~~~IfSIdv~pdg~-~~aTgGq~~d~~~~iW~~~~vl~----~~~~~~~~---l~k~l~~m~~h~~sv~CVR~S~dG~~l 84 (942)
T KOG0973|consen 13 EKSIFSIDVHPDGV-KFATGGQVLDGGIVIWSQDPVLD----EKEEKNEN---LPKHLCTMDDHDGSVNCVRFSPDGSYL 84 (942)
T ss_pred CeeEEEEEecCCce-eEecCCccccccceeeccccccc----hhhhhhcc---cchhheeeccccCceeEEEECCCCCeE
Confidence 45799999999997 689998 899999999753110 01111111 122223357899999999999999999
Q ss_pred EEEeCCCeEEEEEecC----------C-----CccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccCCc
Q 001477 424 GVAFSKHIVHLYTYNP----------T-----GELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR 488 (1071)
Q Consensus 424 a~~~~dg~i~iwd~~~----------~-----~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~ 488 (1071)
|+|+.|+.|.||+... | +..+....+.+|...|.+++|+|++. ++++++.|++|.+||..+.+
T Consensus 85 AsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~--~lvS~s~DnsViiwn~~tF~ 162 (942)
T KOG0973|consen 85 ASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS--LLVSVSLDNSVIIWNAKTFE 162 (942)
T ss_pred eeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc--EEEEecccceEEEEccccce
Confidence 9999999999999873 0 11234557889999999999999999 99999999999999999999
Q ss_pred eeEEecCCCCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCceeEEecCC------CCcEEEEEEccCCCEEEEeccC
Q 001477 489 KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP------GNWCTMMAYSADGTRLFSCGTS 562 (1071)
Q Consensus 489 ~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~------~~~i~~~~~s~~~~~l~~~~~~ 562 (1071)
.+.++++|.+.|..+.|.|-+ +++++-+.|++|++|++.+-+....+..+ ...+..+.|||||.+|++...-
T Consensus 163 ~~~vl~~H~s~VKGvs~DP~G--ky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~ 240 (942)
T KOG0973|consen 163 LLKVLRGHQSLVKGVSWDPIG--KYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAV 240 (942)
T ss_pred eeeeeecccccccceEECCcc--CeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhc
Confidence 999999999999999999866 99999999999999997775555544432 3368899999999999987765
Q ss_pred CCCCCeEEEEeCCCCceeEEeecccccceeEEEEeCC-----CC------------EEEEEeCCCcEEEEeCCCCceeEE
Q 001477 563 KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTT-----RN------------RFLAAGDEFQIKFWDMDNMNMLTT 625 (1071)
Q Consensus 563 ~d~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~------------~l~~~~~dg~i~iwd~~~~~~~~~ 625 (1071)
+.+...+.|.+-.+.+.-..+-||.. ++.++.|+|. .+ .+++|+.|++|.||.....+++..
T Consensus 241 n~~~~~~~IieR~tWk~~~~LvGH~~-p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~v 319 (942)
T KOG0973|consen 241 NGGKSTIAIIERGTWKVDKDLVGHSA-PVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFV 319 (942)
T ss_pred cCCcceeEEEecCCceeeeeeecCCC-ceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhh
Confidence 56677899999888888889999998 9999999972 11 466689999999999988887766
Q ss_pred EecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCh
Q 001477 626 VDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1071)
Q Consensus 626 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~ 664 (1071)
...-.. ..|.+++|+|||..|+++|.||+|.++.+...
T Consensus 320 i~~lf~-~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 320 IHNLFN-KSIVDMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred hhhhhc-CceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 543322 47999999999999999999999999998764
No 64
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=6.2e-29 Score=269.20 Aligned_cols=247 Identities=23% Similarity=0.405 Sum_probs=220.6
Q ss_pred cccCCCCeeEEEECCCCCEEEEEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEE
Q 001477 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1071)
Q Consensus 404 ~~~h~~~v~~~~~spd~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd 483 (1071)
+.+|.++|++++|+|++++|++++.||.+++|++.+++... .+..|...+..+.|+++++ .+++++.|+.|++||
T Consensus 5 ~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~--~l~~~~~~~~i~i~~ 79 (289)
T cd00200 5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLR---TLKGHTGPVRDVAASADGT--YLASGSSDKTIRLWD 79 (289)
T ss_pred hcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEE---EEecCCcceeEEEECCCCC--EEEEEcCCCeEEEEE
Confidence 56899999999999999999999999999999999876444 6678999999999999997 799999999999999
Q ss_pred ccCCceeEEecCCCCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCceeEEecCCCCcEEEEEEccCCCEEEEeccCC
Q 001477 484 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK 563 (1071)
Q Consensus 484 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~ 563 (1071)
+.+++.+..+..|...+.++.|+++ +.++++++.|+.|++||+++.+....+..+...+.+++|+|++.++++++.
T Consensus 80 ~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-- 155 (289)
T cd00200 80 LETGECVRTLTGHTSYVSSVAFSPD--GRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQ-- 155 (289)
T ss_pred cCcccceEEEeccCCcEEEEEEcCC--CCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcC--
Confidence 9998888899999999999999986 378888888999999999988888888888889999999999988888763
Q ss_pred CCCCeEEEEeCCCCceeEEeecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCC
Q 001477 564 EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKE 643 (1071)
Q Consensus 564 d~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~ 643 (1071)
++.+++||+++++.+..+..+.. .+.++.|+|+++.+++++.++.|++||+..++.+..+..+. ..+.++.|+|+
T Consensus 156 --~~~i~i~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~--~~i~~~~~~~~ 230 (289)
T cd00200 156 --DGTIKLWDLRTGKCVATLTGHTG-EVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHE--NGVNSVAFSPD 230 (289)
T ss_pred --CCcEEEEEccccccceeEecCcc-ccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcC--CceEEEEEcCC
Confidence 77899999999998888887766 79999999999999999999999999999988888775443 37899999999
Q ss_pred CCEEEEEeCCCcEEEEEcCCh
Q 001477 644 GSLLAVTTSDNGIKILANSDG 664 (1071)
Q Consensus 644 ~~~l~~~~~dg~v~iw~~~~~ 664 (1071)
+.++++++.+|.+++|+..++
T Consensus 231 ~~~~~~~~~~~~i~i~~~~~~ 251 (289)
T cd00200 231 GYLLASGSEDGTIRVWDLRTG 251 (289)
T ss_pred CcEEEEEcCCCcEEEEEcCCc
Confidence 888888888999999998754
No 65
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=1.4e-30 Score=240.45 Aligned_cols=285 Identities=18% Similarity=0.285 Sum_probs=251.1
Q ss_pred ecCCCCeEEEEeec---CCCeEEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeEEEECCC
Q 001477 343 LNQGSNVMSMDFHP---QQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD 419 (1071)
Q Consensus 343 ~~h~~~V~~~~fsp---~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd 419 (1071)
-.|..+|-.++||| +| ++|++++.||.-.+-+=++|..+.+ +.+|++.|++.....+
T Consensus 11 ~ghtrpvvdl~~s~itp~g-~flisa~kd~~pmlr~g~tgdwigt-------------------feghkgavw~~~l~~n 70 (334)
T KOG0278|consen 11 HGHTRPVVDLAFSPITPDG-YFLISASKDGKPMLRNGDTGDWIGT-------------------FEGHKGAVWSATLNKN 70 (334)
T ss_pred cCCCcceeEEeccCCCCCc-eEEEEeccCCCchhccCCCCCcEEe-------------------eeccCcceeeeecCch
Confidence 34888999999985 77 6899999999999988888887765 7899999999999999
Q ss_pred CCEEEEEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccCCc-eeEEecCCCC
Q 001477 420 GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR-KQYTFEGHEA 498 (1071)
Q Consensus 420 ~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~h~~ 498 (1071)
....|+++.|-+.++||.-+|..+. .+ .|..-|.+++|+.|.+ +|++|+.++.++++|++..+ +...+.+|.+
T Consensus 71 a~~aasaaadftakvw~a~tgdelh---sf-~hkhivk~~af~~ds~--~lltgg~ekllrvfdln~p~App~E~~ghtg 144 (334)
T KOG0278|consen 71 ATRAASAAADFTAKVWDAVTGDELH---SF-EHKHIVKAVAFSQDSN--YLLTGGQEKLLRVFDLNRPKAPPKEISGHTG 144 (334)
T ss_pred hhhhhhhcccchhhhhhhhhhhhhh---hh-hhhheeeeEEecccch--hhhccchHHHhhhhhccCCCCCchhhcCCCC
Confidence 9999999999999999999998776 44 5888999999999999 79999999999999998754 5678889999
Q ss_pred CeEEEEecccCCccEEEEEecCCeEEEEEcCCCceeEEecCCCCcEEEEEEccCCCEEEEeccCCCCCCeEEEEeCCCCc
Q 001477 499 PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA 578 (1071)
Q Consensus 499 ~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~ 578 (1071)
.|..+.|.... +.+++.+.|++||+||.+++.....+.. ...|+++.++++|+++..+. .+.|..||..+..
T Consensus 145 ~Ir~v~wc~eD--~~iLSSadd~tVRLWD~rTgt~v~sL~~-~s~VtSlEvs~dG~ilTia~-----gssV~Fwdaksf~ 216 (334)
T KOG0278|consen 145 GIRTVLWCHED--KCILSSADDKTVRLWDHRTGTEVQSLEF-NSPVTSLEVSQDGRILTIAY-----GSSVKFWDAKSFG 216 (334)
T ss_pred cceeEEEeccC--ceEEeeccCCceEEEEeccCcEEEEEec-CCCCcceeeccCCCEEEEec-----CceeEEecccccc
Confidence 99999998654 7888999999999999999988877664 45789999999999998764 4569999999999
Q ss_pred eeEEeecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCcEEE
Q 001477 579 IKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKI 658 (1071)
Q Consensus 579 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~i 658 (1071)
.++.++... .|.+.+.+|+...+++|++|+.++.||..+++.+... ..++..+|.|+.|+|+|..-++|+.||+|++
T Consensus 217 ~lKs~k~P~--nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~-nkgh~gpVhcVrFSPdGE~yAsGSEDGTirl 293 (334)
T KOG0278|consen 217 LLKSYKMPC--NVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSY-NKGHFGPVHCVRFSPDGELYASGSEDGTIRL 293 (334)
T ss_pred ceeeccCcc--ccccccccCCCceEEecCcceEEEEEeccCCceeeec-ccCCCCceEEEEECCCCceeeccCCCceEEE
Confidence 998887654 5888999999999999999999999999999999886 2244568999999999999999999999999
Q ss_pred EEcCCh
Q 001477 659 LANSDG 664 (1071)
Q Consensus 659 w~~~~~ 664 (1071)
|....+
T Consensus 294 WQt~~~ 299 (334)
T KOG0278|consen 294 WQTTPG 299 (334)
T ss_pred EEecCC
Confidence 998665
No 66
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=3.5e-28 Score=220.90 Aligned_cols=313 Identities=16% Similarity=0.245 Sum_probs=243.7
Q ss_pred ceeeEEeecCCCCeEEEEeecCCCeEEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeEEE
Q 001477 336 TKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCV 415 (1071)
Q Consensus 336 ~~~~~~~~~h~~~V~~~~fsp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~ 415 (1071)
..+.+..+.....|.+++|+|.|. +.|+|+...+.+|.....-..++.. ......++...-..-+.|.+.|+|.+
T Consensus 22 ~f~~i~~l~dsqairav~fhp~g~-lyavgsnskt~ric~yp~l~~~r~~----hea~~~pp~v~~kr~khhkgsiyc~~ 96 (350)
T KOG0641|consen 22 HFEAINILEDSQAIRAVAFHPAGG-LYAVGSNSKTFRICAYPALIDLRHA----HEAAKQPPSVLCKRNKHHKGSIYCTA 96 (350)
T ss_pred ceEEEEEecchhheeeEEecCCCc-eEEeccCCceEEEEccccccCcccc----cccccCCCeEEeeeccccCccEEEEE
Confidence 346677788888999999999998 8899999999999876433222110 00000000111111356899999999
Q ss_pred ECCCCCEEEEEeCCCeEEEEEecC--CCccceeeEeecccCCEEEEEEecC---CCceEEEEEe-CCCcEEEEEccCCce
Q 001477 416 WGPDGLMLGVAFSKHIVHLYTYNP--TGELRQHLEIDAHVGGVNDIAFAHP---NKQLCIVTCG-DDKMIKVWDVVAGRK 489 (1071)
Q Consensus 416 ~spd~~~la~~~~dg~i~iwd~~~--~~~~~~~~~~~~h~~~v~~~~~s~d---~~~~~l~s~~-~d~~i~iwd~~~~~~ 489 (1071)
|||+|.+||+|++|.+|++...+. .+......++.-|.+.|..++|..+ +.. +|++++ .|..|++-|..+|+.
T Consensus 97 ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~-il~s~gagdc~iy~tdc~~g~~ 175 (350)
T KOG0641|consen 97 WSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGA-ILASAGAGDCKIYITDCGRGQG 175 (350)
T ss_pred ecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCce-EEEecCCCcceEEEeecCCCCc
Confidence 999999999999999999976653 3334444577789999999999653 222 566654 578899999999999
Q ss_pred eEEecCCCCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCceeEEecC-------CCCcEEEEEEccCCCEEEEeccC
Q 001477 490 QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA-------PGNWCTMMAYSADGTRLFSCGTS 562 (1071)
Q Consensus 490 ~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~-------~~~~i~~~~~s~~~~~l~~~~~~ 562 (1071)
.+.+.+|++.|.++.-- ++.++++|+.|.+|++||++-...+..+.. ....|.+++..|.|+.|+++..
T Consensus 176 ~~a~sghtghilalysw---n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~- 251 (350)
T KOG0641|consen 176 FHALSGHTGHILALYSW---NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHA- 251 (350)
T ss_pred ceeecCCcccEEEEEEe---cCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccC-
Confidence 99999999999988522 348999999999999999998877765532 2357999999999999999875
Q ss_pred CCCCCeEEEEeCCCCceeEEeecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCC--ceeEEEecCCCCCCcceEEE
Q 001477 563 KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM--NMLTTVDADGGLPASPRLRF 640 (1071)
Q Consensus 563 ~d~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~v~~~~~ 640 (1071)
|....+||++.+++++.|..|.. .|.++.|+|...++++++.|..|++-|+... ..+..+-...+...+..+.|
T Consensus 252 ---dssc~lydirg~r~iq~f~phsa-dir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rw 327 (350)
T KOG0641|consen 252 ---DSSCMLYDIRGGRMIQRFHPHSA-DIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRW 327 (350)
T ss_pred ---CCceEEEEeeCCceeeeeCCCcc-ceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEe
Confidence 77799999999999999999988 8999999999999999999999999998742 22222222234457788999
Q ss_pred cCCCCEEEEEeCCCcEEEEEcC
Q 001477 641 NKEGSLLAVTTSDNGIKILANS 662 (1071)
Q Consensus 641 s~~~~~l~~~~~dg~v~iw~~~ 662 (1071)
+|..-.+++.+.|.++.+|.++
T Consensus 328 h~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 328 HPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred cCccceeeeccCcceEEEeccC
Confidence 9999899999999999999764
No 67
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=1.7e-28 Score=299.07 Aligned_cols=271 Identities=14% Similarity=0.196 Sum_probs=217.0
Q ss_pred CCeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeEEEECCCCCEEEEEeCCCeEEEEEecCC----Ccc
Q 001477 368 VGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPT----GEL 443 (1071)
Q Consensus 368 dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~la~~~~dg~i~iwd~~~~----~~~ 443 (1071)
+|.+++|+..+.+.... .....+..|.+.|.+++|+|+|+++|+|+.|+.|+||+.... ...
T Consensus 457 ~gl~~~~~~~~~~~~~~--------------~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~ 522 (793)
T PLN00181 457 EGLCKYLSFSKLRVKAD--------------LKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDI 522 (793)
T ss_pred hhhhhhhcccceEEEEe--------------eccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccccccc
Confidence 67788888765433211 001114569999999999999999999999999999997642 111
Q ss_pred c-eeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccCCceeEEecCCCCCeEEEEecccCCccEEEEEecCCe
Q 001477 444 R-QHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGK 522 (1071)
Q Consensus 444 ~-~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~ 522 (1071)
. ....+ .+...|.+++|++.... +|++++.|++|++||+.+++.+..+.+|...|++++|+|. ++.+|++|+.|+.
T Consensus 523 ~~~~~~~-~~~~~v~~l~~~~~~~~-~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~-~~~~L~Sgs~Dg~ 599 (793)
T PLN00181 523 HYPVVEL-ASRSKLSGICWNSYIKS-QVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSA-DPTLLASGSDDGS 599 (793)
T ss_pred ccceEEe-cccCceeeEEeccCCCC-EEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCC-CCCEEEEEcCCCE
Confidence 1 11123 24567999999886433 7999999999999999999999999999999999999974 3479999999999
Q ss_pred EEEEEcCCCceeEEecCCCCcEEEEEEc-cCCCEEEEeccCCCCCCeEEEEeCCCCc-eeEEeecccccceeEEEEeCCC
Q 001477 523 IKAWLYDYLGSRVDYDAPGNWCTMMAYS-ADGTRLFSCGTSKEGESHLVEWNESEGA-IKRTYSGFRKRSLGVVQFDTTR 600 (1071)
Q Consensus 523 i~vwd~~~~~~~~~~~~~~~~i~~~~~s-~~~~~l~~~~~~~d~~~~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~ 600 (1071)
|++||+++......+..+ ..+.++.|+ ++|.++++++. ++.|++||++++. .+..+.+|.. .|.++.|. ++
T Consensus 600 v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~----dg~I~iwD~~~~~~~~~~~~~h~~-~V~~v~f~-~~ 672 (793)
T PLN00181 600 VKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSA----DHKVYYYDLRNPKLPLCTMIGHSK-TVSYVRFV-DS 672 (793)
T ss_pred EEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeC----CCeEEEEECCCCCccceEecCCCC-CEEEEEEe-CC
Confidence 999999988777666644 578899995 57899999875 8889999998765 5667778876 89999997 67
Q ss_pred CEEEEEeCCCcEEEEeCCCC------ceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCh
Q 001477 601 NRFLAAGDEFQIKFWDMDNM------NMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1071)
Q Consensus 601 ~~l~~~~~dg~i~iwd~~~~------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~ 664 (1071)
.++++++.|++|++||+..+ .++..+.+|. ..+..++|+|++.+|++|+.||.|++|+....
T Consensus 673 ~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~--~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~ 740 (793)
T PLN00181 673 STLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHT--NVKNFVGLSVSDGYIATGSETNEVFVYHKAFP 740 (793)
T ss_pred CEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCC--CCeeEEEEcCCCCEEEEEeCCCEEEEEECCCC
Confidence 89999999999999999743 4566666554 46889999999999999999999999997544
No 68
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=5.5e-29 Score=253.01 Aligned_cols=282 Identities=18% Similarity=0.264 Sum_probs=240.5
Q ss_pred CCCCeEEEEeecCCCeEEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeEEEECCCCCEEE
Q 001477 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1071)
Q Consensus 345 h~~~V~~~~fsp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~la 424 (1071)
..+.|++++|||..++=+|+.+ .-.+.||+..+...... +......|.++.|-.||++||
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~-------------------~srFk~~v~s~~fR~DG~Lla 84 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKT-------------------FSRFKDVVYSVDFRSDGRLLA 84 (487)
T ss_pred ccCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhh-------------------HHhhccceeEEEeecCCeEEE
Confidence 3468999999997765444433 45899999887665432 334566799999999999999
Q ss_pred EEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccCCceeEEecCCCCCeEEEE
Q 001477 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 504 (1071)
Q Consensus 425 ~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~ 504 (1071)
+|...|.|+|+|.++...++ .+.+|+.+|..+.|+|++.. .+++|++|+.+++||+.+......+.+|++.|.|.+
T Consensus 85 aGD~sG~V~vfD~k~r~iLR---~~~ah~apv~~~~f~~~d~t-~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~ 160 (487)
T KOG0310|consen 85 AGDESGHVKVFDMKSRVILR---QLYAHQAPVHVTKFSPQDNT-MLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGD 160 (487)
T ss_pred ccCCcCcEEEeccccHHHHH---HHhhccCceeEEEecccCCe-EEEecCCCceEEEEEcCCcEEEEEecCCcceeEeec
Confidence 99999999999977654555 67899999999999998887 899999999999999999988778999999999999
Q ss_pred ecccCCccEEEEEecCCeEEEEEcCCCceeEEecCCCCcEEEEEEccCCCEEEEeccCCCCCCeEEEEeCCCCc-eeEEe
Q 001477 505 PHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA-IKRTY 583 (1071)
Q Consensus 505 ~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~-~~~~~ 583 (1071)
|+|..+ .++++||.||.|++||++.......--.|+.+|..+.+-|.|..+++++ .+.+++||+.+|. .+..+
T Consensus 161 ~~~~~~-hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAg-----Gn~vkVWDl~~G~qll~~~ 234 (487)
T KOG0310|consen 161 ISPAND-HIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAG-----GNSVKVWDLTTGGQLLTSM 234 (487)
T ss_pred cccCCC-eEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcC-----CCeEEEEEecCCceehhhh
Confidence 998654 8999999999999999998865555556889999999999999999986 5569999999655 44445
Q ss_pred ecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEE
Q 001477 584 SGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILA 660 (1071)
Q Consensus 584 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~ 660 (1071)
..|.. .|+|+++..++..|+++|-|+.+++||+.+.+.+..+... .+|.+++.+|+++.++.|..+|.+.+-+
T Consensus 235 ~~H~K-tVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~---~pvLsiavs~dd~t~viGmsnGlv~~rr 307 (487)
T KOG0310|consen 235 FNHNK-TVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYP---GPVLSIAVSPDDQTVVIGMSNGLVSIRR 307 (487)
T ss_pred hcccc-eEEEEEeecCCceEeecccccceEEEEccceEEEEeeecc---cceeeEEecCCCceEEEecccceeeeeh
Confidence 55766 8999999999999999999999999999999999888765 4799999999999999999999887753
No 69
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=2.5e-30 Score=247.26 Aligned_cols=285 Identities=16% Similarity=0.221 Sum_probs=241.5
Q ss_pred CCcccccccccCCCCCCCCCCccCCCCCCCCCCcccccccCCCCCCCCCcccccCCChhhHHhhcccCCcceeeccCCCC
Q 001477 246 PSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKHPRTPTGMTGMDYQSADSDHLMKRIRTGQSDEVSFAGVAH 325 (1071)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~~ 325 (1071)
++.|||+|.|+.+ +..+|+|++|+..+.. + +..+.|+..+.
T Consensus 218 cA~FSPDgqyLvs-------gSvDGFiEVWny~~GK-l---------rKDLkYQAqd~---------------------- 258 (508)
T KOG0275|consen 218 CARFSPDGQYLVS-------GSVDGFIEVWNYTTGK-L---------RKDLKYQAQDN---------------------- 258 (508)
T ss_pred heeeCCCCceEee-------ccccceeeeehhccch-h---------hhhhhhhhhcc----------------------
Confidence 5789999999887 5689999999776641 1 12333333322
Q ss_pred CCccccCCccceeeEEeecCCCCeEEEEeecCCCeEEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhhhcc
Q 001477 326 TPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLN 405 (1071)
Q Consensus 326 ~~~~~~~d~~~~~~~~~~~h~~~V~~~~fsp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 405 (1071)
.+.+.+.|.|+.||.|.. +||+|+.||.|++|.+.+|.+++.. -.
T Consensus 259 ----------------fMMmd~aVlci~FSRDsE-MlAsGsqDGkIKvWri~tG~ClRrF------------------dr 303 (508)
T KOG0275|consen 259 ----------------FMMMDDAVLCISFSRDSE-MLASGSQDGKIKVWRIETGQCLRRF------------------DR 303 (508)
T ss_pred ----------------eeecccceEEEeecccHH-HhhccCcCCcEEEEEEecchHHHHh------------------hh
Confidence 123678999999999997 8999999999999999999998751 23
Q ss_pred cCCCCeeEEEECCCCCEEEEEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEcc
Q 001477 406 DAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV 485 (1071)
Q Consensus 406 ~h~~~v~~~~~spd~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~ 485 (1071)
.|+..|+|+.||.|+..+.+++.|.+++|.-+++|++++ ++.||..-|+...|++||. .+++++.||+|++|+..
T Consensus 304 AHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LK---EfrGHsSyvn~a~ft~dG~--~iisaSsDgtvkvW~~K 378 (508)
T KOG0275|consen 304 AHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLK---EFRGHSSYVNEATFTDDGH--HIISASSDGTVKVWHGK 378 (508)
T ss_pred hhccCeeEEEEccCcchhhcccccceEEEeccccchhHH---HhcCccccccceEEcCCCC--eEEEecCCccEEEecCc
Confidence 799999999999999999999999999999999999888 8899999999999999999 89999999999999999
Q ss_pred CCceeEEecC--CCCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCceeEEecC---CCCcEEEEEEccCCCEEEEec
Q 001477 486 AGRKQYTFEG--HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA---PGNWCTMMAYSADGTRLFSCG 560 (1071)
Q Consensus 486 ~~~~~~~~~~--h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~---~~~~i~~~~~s~~~~~l~~~~ 560 (1071)
+++|+.+|+. ...+|+++...|.+. ..++.+...++|.+.++. ++.+..+.. .++...+.+.||.|.++++.+
T Consensus 379 tteC~~Tfk~~~~d~~vnsv~~~PKnp-eh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGewiYcig 456 (508)
T KOG0275|consen 379 TTECLSTFKPLGTDYPVNSVILLPKNP-EHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKGEWIYCIG 456 (508)
T ss_pred chhhhhhccCCCCcccceeEEEcCCCC-ceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEEEecCCCcEEEEEc
Confidence 9999998874 567899999888764 678888889999998876 333444432 345677888999999999998
Q ss_pred cCCCCCCeEEEEeCCCCceeEEeecccccceeEEEEeCCCCEEEEEeCCCcEEEEe
Q 001477 561 TSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWD 616 (1071)
Q Consensus 561 ~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 616 (1071)
. |+.++.+...+|+..+++..|.. .+-.++.+|..+.+++-++||.+++|.
T Consensus 457 E----D~vlYCF~~~sG~LE~tl~VhEk-dvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 457 E----DGVLYCFSVLSGKLERTLPVHEK-DVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred c----CcEEEEEEeecCceeeeeecccc-cccccccCcccchhhhhcccchhhhcC
Confidence 5 88899999999999999999988 677799999999999999999999995
No 70
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=4.3e-30 Score=254.80 Aligned_cols=294 Identities=17% Similarity=0.219 Sum_probs=253.3
Q ss_pred CccceeeEEeec-CCCCeEEEEeecCCCeEEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCe
Q 001477 333 DDLTKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISV 411 (1071)
Q Consensus 333 d~~~~~~~~~~~-h~~~V~~~~fsp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v 411 (1071)
+..|......+. |.++|..+.|-++.. .|++|+.|..|++|++...+... ...+.|..++|
T Consensus 161 ~~lpS~~~~~ld~h~gev~~v~~l~~sd-tlatgg~Dr~Ik~W~v~~~k~~~-----------------~~tLaGs~g~i 222 (459)
T KOG0288|consen 161 DTLPSRALFVLDAHEGEVHDVEFLRNSD-TLATGGSDRIIKLWNVLGEKSEL-----------------ISTLAGSLGNI 222 (459)
T ss_pred cccchhhhhhhhccccccceeEEccCcc-hhhhcchhhhhhhhhcccchhhh-----------------hhhhhccCCCc
Confidence 445556666666 889999999999976 58999999999999998765221 11267888999
Q ss_pred eEEEECCCCCEEEEEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccCCceeE
Q 001477 412 NRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY 491 (1071)
Q Consensus 412 ~~~~~spd~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~ 491 (1071)
+.+.|.+++++++++++|+.+++|++...+... ++.+|...|+++.|..... .+++|+.|.+|++||+..+.+.+
T Consensus 223 t~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~---TLsGHtdkVt~ak~~~~~~--~vVsgs~DRtiK~WDl~k~~C~k 297 (459)
T KOG0288|consen 223 TSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRH---TLSGHTDKVTAAKFKLSHS--RVVSGSADRTIKLWDLQKAYCSK 297 (459)
T ss_pred ceeeecCCCceEEeecCCCceeeeeccchhhhh---hhcccccceeeehhhcccc--ceeeccccchhhhhhhhhhheec
Confidence 999999999999999999999999999987665 8889999999999988776 59999999999999999998887
Q ss_pred EecCCCCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCceeEEecCCCCcEEEEEEccCCCEEEEeccCCCCCCeEEE
Q 001477 492 TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVE 571 (1071)
Q Consensus 492 ~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~i 571 (1071)
++- ....+..|+.++ ..+++|-.|+.|++||.+..........++ .|+++..+++|..+++++. |..+.+
T Consensus 298 t~l-~~S~cnDI~~~~----~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssR----Ddtl~v 367 (459)
T KOG0288|consen 298 TVL-PGSQCNDIVCSI----SDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSR----DDTLKV 367 (459)
T ss_pred ccc-ccccccceEecc----eeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecC----CCceee
Confidence 764 345566666652 678999999999999999999888888766 9999999999999999975 778999
Q ss_pred EeCCCCceeEEeeccc---ccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEE
Q 001477 572 WNESEGAIKRTYSGFR---KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLA 648 (1071)
Q Consensus 572 wd~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 648 (1071)
.|+++.+....+.... ....+.+.|||++.|+++||.||.|+||++.++++...+........|++++|+|.|..++
T Consensus 368 iDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Ll 447 (459)
T KOG0288|consen 368 IDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLL 447 (459)
T ss_pred eecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhh
Confidence 9999998888776532 2247789999999999999999999999999999999998776666799999999999999
Q ss_pred EEeCCCcEEEE
Q 001477 649 VTTSDNGIKIL 659 (1071)
Q Consensus 649 ~~~~dg~v~iw 659 (1071)
+++.++.+.+|
T Consensus 448 sadk~~~v~lW 458 (459)
T KOG0288|consen 448 SADKQKAVTLW 458 (459)
T ss_pred cccCCcceEec
Confidence 99999999999
No 71
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=5.5e-29 Score=244.40 Aligned_cols=291 Identities=18% Similarity=0.328 Sum_probs=241.9
Q ss_pred ccceeeEEeecCCCCeEEEEeecCCCeEEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeE
Q 001477 334 DLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNR 413 (1071)
Q Consensus 334 ~~~~~~~~~~~h~~~V~~~~fsp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~ 413 (1071)
..+.++...+.|.+-|.++... ++ .+.+|++||.+++||..... ... +.||.++|.+
T Consensus 93 ~~aP~pl~~~~hdDWVSsv~~~--~~-~IltgsYDg~~riWd~~Gk~-~~~-------------------~~Ght~~ik~ 149 (423)
T KOG0313|consen 93 ITAPKPLQCFLHDDWVSSVKGA--SK-WILTGSYDGTSRIWDLKGKS-IKT-------------------IVGHTGPIKS 149 (423)
T ss_pred cCCCCccccccchhhhhhhccc--Cc-eEEEeecCCeeEEEecCCce-EEE-------------------EecCCcceee
Confidence 3566778888899999999998 44 57899999999999987543 321 6799999998
Q ss_pred EEECCCC---CEEEEEeCCCeEEEEEecCCCccc-eeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccC---
Q 001477 414 CVWGPDG---LMLGVAFSKHIVHLYTYNPTGELR-QHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA--- 486 (1071)
Q Consensus 414 ~~~spd~---~~la~~~~dg~i~iwd~~~~~~~~-~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~--- 486 (1071)
++|--.. ..+++++.|.++++|.++.++... ......||...|.++...++|. .+++|+.|.+|++|+..+
T Consensus 150 v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgt--r~~SgS~D~~lkiWs~~~~~~ 227 (423)
T KOG0313|consen 150 VAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGT--RFCSGSWDTMLKIWSVETDEE 227 (423)
T ss_pred eEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCC--eEEeecccceeeecccCCCcc
Confidence 8885433 369999999999999998876432 2223459999999999999999 899999999999999321
Q ss_pred ----------------------CceeEEecCCCCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCceeEEecCCCCcE
Q 001477 487 ----------------------GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWC 544 (1071)
Q Consensus 487 ----------------------~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i 544 (1071)
+.++.++.||..+|.++.|.+. ..+++++.|.+|+.||+.+++....+.. ...+
T Consensus 228 ~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~---~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl 303 (423)
T KOG0313|consen 228 DELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDA---TVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSL 303 (423)
T ss_pred ccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCC---CceEeecccceEEEEEeecccceeeeec-Ccce
Confidence 2356678899999999999873 6899999999999999999888776654 4578
Q ss_pred EEEEEccCCCEEEEeccCCCCCCeEEEEeCCCCc---eeEEeecccccceeEEEEeCCCC-EEEEEeCCCcEEEEeCCCC
Q 001477 545 TMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA---IKRTYSGFRKRSLGVVQFDTTRN-RFLAAGDEFQIKFWDMDNM 620 (1071)
Q Consensus 545 ~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~---~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~ 620 (1071)
.++..+|..++|++++. +..+++||.+++. ...+|.+|.. .|.++.|+|... .|++++.|+++++||+++.
T Consensus 304 ~~i~~~~~~~Ll~~gss----dr~irl~DPR~~~gs~v~~s~~gH~n-wVssvkwsp~~~~~~~S~S~D~t~klWDvRS~ 378 (423)
T KOG0313|consen 304 NCISYSPLSKLLASGSS----DRHIRLWDPRTGDGSVVSQSLIGHKN-WVSSVKWSPTNEFQLVSGSYDNTVKLWDVRST 378 (423)
T ss_pred eEeecccccceeeecCC----CCceeecCCCCCCCceeEEeeecchh-hhhheecCCCCceEEEEEecCCeEEEEEeccC
Confidence 99999999999999986 7779999998754 5567889988 999999999875 4677999999999999987
Q ss_pred c-eeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEc
Q 001477 621 N-MLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (1071)
Q Consensus 621 ~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~ 661 (1071)
+ ++..+..|. ..|.++.|+. +..+++|+.|.+++++.-
T Consensus 379 k~plydI~~h~--DKvl~vdW~~-~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 379 KAPLYDIAGHN--DKVLSVDWNE-GGLIVSGGADNKLRIFKG 417 (423)
T ss_pred CCcceeeccCC--ceEEEEeccC-CceEEeccCcceEEEecc
Confidence 7 888888764 4799999975 668999999999999864
No 72
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=1.1e-29 Score=234.62 Aligned_cols=292 Identities=16% Similarity=0.308 Sum_probs=247.2
Q ss_pred eeEEecCCCCcEEEEEEcc---CCCEEEEeccCCCCCCeEEEEeCCCCceeEEeecccccceeEEEEeCCCCEEEEEeCC
Q 001477 533 SRVDYDAPGNWCTMMAYSA---DGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE 609 (1071)
Q Consensus 533 ~~~~~~~~~~~i~~~~~s~---~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 609 (1071)
..+...+|..+|..++||| +|-+|++++. |+.-.+-+-.+|.-+.+|.+|.+ .|.+.+.+.+-..-++++.|
T Consensus 6 ~pl~c~ghtrpvvdl~~s~itp~g~flisa~k----d~~pmlr~g~tgdwigtfeghkg-avw~~~l~~na~~aasaaad 80 (334)
T KOG0278|consen 6 TPLTCHGHTRPVVDLAFSPITPDGYFLISASK----DGKPMLRNGDTGDWIGTFEGHKG-AVWSATLNKNATRAASAAAD 80 (334)
T ss_pred CceEEcCCCcceeEEeccCCCCCceEEEEecc----CCCchhccCCCCCcEEeeeccCc-ceeeeecCchhhhhhhhccc
Confidence 3455677888999999986 8888888874 66677778889999999999998 89999998888888889999
Q ss_pred CcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCChhhhhhhhcCCccccccCCCCCCCCC
Q 001477 610 FQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSK 689 (1071)
Q Consensus 610 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 689 (1071)
-+-++||.-+|..+..+.. . .-|..++|+.|.+.|++|+.+..+|+||++........+.+
T Consensus 81 ftakvw~a~tgdelhsf~h-k--hivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~g---------------- 141 (334)
T KOG0278|consen 81 FTAKVWDAVTGDELHSFEH-K--HIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISG---------------- 141 (334)
T ss_pred chhhhhhhhhhhhhhhhhh-h--heeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcC----------------
Confidence 9999999999999988863 2 36899999999999999999999999998765333333322
Q ss_pred CccccccCCCCccccccCCCCCCCCCCCCcccccccCCCCcccccccccccccccCccceeccCCCCCcccceeeecCCC
Q 001477 690 PLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDS 769 (1071)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~ 769 (1071)
T Consensus 142 -------------------------------------------------------------------------------- 141 (334)
T KOG0278|consen 142 -------------------------------------------------------------------------------- 141 (334)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCceEEEEEecccchhhhccccceeEEEecccccCCCCCccceeecceeccCCCCCccccccCCCCCCCCCeEEEEEe
Q 001477 770 IAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALS 849 (1071)
Q Consensus 770 ~~~~~v~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~v~~s 849 (1071)
|.+.|+.+.|....+.+++.+.|++||+||..+ |..... +.. +.+|+++.++
T Consensus 142 -htg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rT----------------------gt~v~s-L~~----~s~VtSlEvs 193 (334)
T KOG0278|consen 142 -HTGGIRTVLWCHEDKCILSSADDKTVRLWDHRT----------------------GTEVQS-LEF----NSPVTSLEVS 193 (334)
T ss_pred -CCCcceeEEEeccCceEEeeccCCceEEEEecc----------------------CcEEEE-Eec----CCCCcceeec
Confidence 566788888888888899989999999997654 332221 222 6789999999
Q ss_pred cCCcEEEEEeCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEccCCeEEEEe-cCcCCCee
Q 001477 850 KNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKL-KGHQNRIT 928 (1071)
Q Consensus 850 ~d~~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~l-~~h~~~v~ 928 (1071)
+||++|.++..+.|.+||.++..+++.+.. ...|.+..++| +..++++|+.|..++.||+.+++.+..+ ++|-++|.
T Consensus 194 ~dG~ilTia~gssV~Fwdaksf~~lKs~k~-P~nV~SASL~P-~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVh 271 (334)
T KOG0278|consen 194 QDGRILTIAYGSSVKFWDAKSFGLLKSYKM-PCNVESASLHP-KKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVH 271 (334)
T ss_pred cCCCEEEEecCceeEEeccccccceeeccC-ccccccccccC-CCceEEecCcceEEEEEeccCCceeeecccCCCCceE
Confidence 999999999999999999999999888774 34689999999 7889999999999999999999999886 89999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCce
Q 001477 929 GLAFSPTLNALVSSGADAQLCMWSIDKWEK 958 (1071)
Q Consensus 929 ~l~~s~d~~~l~s~~~d~~v~vWd~~~~~~ 958 (1071)
|+.|+|||...++||+||+|++|.+..++.
T Consensus 272 cVrFSPdGE~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 272 CVRFSPDGELYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred EEEECCCCceeeccCCCceEEEEEecCCCc
Confidence 999999999999999999999999887653
No 73
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=2.4e-28 Score=228.51 Aligned_cols=286 Identities=13% Similarity=0.162 Sum_probs=239.4
Q ss_pred ecCCCCeEEEEeecCCCeEEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeEEEECCCCCE
Q 001477 343 LNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLM 422 (1071)
Q Consensus 343 ~~h~~~V~~~~fsp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~ 422 (1071)
..|..+++.+.|+.+|. ||.+++.|.++.+|-..+|+.+.+ +.||.+.|+|+...-+.++
T Consensus 7 ~GHERplTqiKyN~eGD-LlFscaKD~~~~vw~s~nGerlGt-------------------y~GHtGavW~~Did~~s~~ 66 (327)
T KOG0643|consen 7 QGHERPLTQIKYNREGD-LLFSCAKDSTPTVWYSLNGERLGT-------------------YDGHTGAVWCCDIDWDSKH 66 (327)
T ss_pred ccCccccceEEecCCCc-EEEEecCCCCceEEEecCCceeee-------------------ecCCCceEEEEEecCCcce
Confidence 34889999999999998 899999999999999989988865 7899999999999999999
Q ss_pred EEEEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEE-----eCCCcEEEEEcc-------CCcee
Q 001477 423 LGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTC-----GDDKMIKVWDVV-------AGRKQ 490 (1071)
Q Consensus 423 la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~-----~~d~~i~iwd~~-------~~~~~ 490 (1071)
+++|+.|.++++||+++|+++. .+ ....+|..+.|+++|. +++.+ +..+.|.++|++ ..++.
T Consensus 67 liTGSAD~t~kLWDv~tGk~la---~~-k~~~~Vk~~~F~~~gn--~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~ 140 (327)
T KOG0643|consen 67 LITGSADQTAKLWDVETGKQLA---TW-KTNSPVKRVDFSFGGN--LILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPY 140 (327)
T ss_pred eeeccccceeEEEEcCCCcEEE---Ee-ecCCeeEEEeeccCCc--EEEEEehhhcCcceEEEEEEccCChhhhcccCce
Confidence 9999999999999999998776 33 3567899999999998 44443 334689999998 45567
Q ss_pred EEecCCCCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCceeE-EecCCCCcEEEEEEccCCCEEEEeccCCCCCCeE
Q 001477 491 YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV-DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHL 569 (1071)
Q Consensus 491 ~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~-~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i 569 (1071)
..+..+...++.+.|.|.+ .+|++|..||.|..||++++.... ....|...|+.+++++|..++++++. |.+-
T Consensus 141 ~kI~t~~skit~a~Wg~l~--~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~----Dtta 214 (327)
T KOG0643|consen 141 LKIPTPDSKITSALWGPLG--ETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSK----DTTA 214 (327)
T ss_pred EEecCCccceeeeeecccC--CEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEeccc----Cccc
Confidence 7888889999999999876 899999999999999999976654 55778889999999999999999985 7789
Q ss_pred EEEeCCCCceeEEeecccccceeEEEEeCCCCEEEEEeCCCc--EE------------EEeCCCCceeEEEecCCCCCCc
Q 001477 570 VEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQ--IK------------FWDMDNMNMLTTVDADGGLPAS 635 (1071)
Q Consensus 570 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~--i~------------iwd~~~~~~~~~~~~~~~~~~v 635 (1071)
++||..+-+.++++.... +|++.+++|....++.|+.... |. +|++-..+.+..++ +|..+|
T Consensus 215 kl~D~~tl~v~Kty~te~--PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvk--GHFGPI 290 (327)
T KOG0643|consen 215 KLVDVRTLEVLKTYTTER--PVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVK--GHFGPI 290 (327)
T ss_pred eeeeccceeeEEEeeecc--cccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcccc--ccccCc
Confidence 999999999999998765 8999999999888888763222 11 22222223444444 456699
Q ss_pred ceEEEcCCCCEEEEEeCCCcEEEEEcCCh
Q 001477 636 PRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1071)
Q Consensus 636 ~~~~~s~~~~~l~~~~~dg~v~iw~~~~~ 664 (1071)
++++|+|+|+..++|+.||.||+.-....
T Consensus 291 NsvAfhPdGksYsSGGEDG~VR~h~Fd~~ 319 (327)
T KOG0643|consen 291 NSVAFHPDGKSYSSGGEDGYVRLHHFDSN 319 (327)
T ss_pred ceeEECCCCcccccCCCCceEEEEEeccc
Confidence 99999999999999999999999876543
No 74
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=2.6e-27 Score=221.56 Aligned_cols=235 Identities=14% Similarity=0.207 Sum_probs=204.5
Q ss_pred hcccCCCCeeEEEECCCCCEEEEEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEE
Q 001477 403 LLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 482 (1071)
Q Consensus 403 ~~~~h~~~v~~~~~spd~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iw 482 (1071)
.+.||..+++.+.++.+|.+|.+++.|.++.+|-..+|+.+. ++.||.+.|+|++..-+.+ .++||+.|.++++|
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlG---ty~GHtGavW~~Did~~s~--~liTGSAD~t~kLW 79 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLG---TYDGHTGAVWCCDIDWDSK--HLITGSADQTAKLW 79 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceee---eecCCCceEEEEEecCCcc--eeeeccccceeEEE
Confidence 378999999999999999999999999999999998888776 8999999999999999998 89999999999999
Q ss_pred EccCCceeEEecCCCCCeEEEEecccCCccEEEEEe-----cCCeEEEEEcC-------CCceeEEecCCCCcEEEEEEc
Q 001477 483 DVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA-----IDGKIKAWLYD-------YLGSRVDYDAPGNWCTMMAYS 550 (1071)
Q Consensus 483 d~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~-----~d~~i~vwd~~-------~~~~~~~~~~~~~~i~~~~~s 550 (1071)
|+.+|+++..++ ...+|..+.|++.+ ++++... ..+.|.++|++ ..++...+..+...++.+-|+
T Consensus 80 Dv~tGk~la~~k-~~~~Vk~~~F~~~g--n~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg 156 (327)
T KOG0643|consen 80 DVETGKQLATWK-TNSPVKRVDFSFGG--NLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWG 156 (327)
T ss_pred EcCCCcEEEEee-cCCeeEEEeeccCC--cEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeec
Confidence 999999999986 67789999999865 5555543 34669999988 344566778888999999999
Q ss_pred cCCCEEEEeccCCCCCCeEEEEeCCCCce-eEEeecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecC
Q 001477 551 ADGTRLFSCGTSKEGESHLVEWNESEGAI-KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD 629 (1071)
Q Consensus 551 ~~~~~l~~~~~~~d~~~~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 629 (1071)
|-+++|++|.. ++.|.+||.++|+. +..-..|.. .|+.++++++..++++++.|.+-++||..+.+.++++...
T Consensus 157 ~l~~~ii~Ghe----~G~is~~da~~g~~~v~s~~~h~~-~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te 231 (327)
T KOG0643|consen 157 PLGETIIAGHE----DGSISIYDARTGKELVDSDEEHSS-KINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTE 231 (327)
T ss_pred ccCCEEEEecC----CCcEEEEEcccCceeeechhhhcc-ccccccccCCcceEEecccCccceeeeccceeeEEEeeec
Confidence 99999999975 88899999999854 445556665 8999999999999999999999999999999999888643
Q ss_pred CCCCCcceEEEcCCCCEEEEEeCC
Q 001477 630 GGLPASPRLRFNKEGSLLAVTTSD 653 (1071)
Q Consensus 630 ~~~~~v~~~~~s~~~~~l~~~~~d 653 (1071)
.+|++.+++|-...++.|+..
T Consensus 232 ---~PvN~aaisP~~d~VilgGGq 252 (327)
T KOG0643|consen 232 ---RPVNTAAISPLLDHVILGGGQ 252 (327)
T ss_pred ---ccccceecccccceEEecCCc
Confidence 479999999988788777654
No 75
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=9.4e-27 Score=224.81 Aligned_cols=281 Identities=14% Similarity=0.232 Sum_probs=232.7
Q ss_pred CCCeEEEEeecCCCeEEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeEEEECCCCCEEEE
Q 001477 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1071)
Q Consensus 346 ~~~V~~~~fsp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~la~ 425 (1071)
.+.|.++.|+++|. ++++++.|.+++|||..+++++.. +..++..|..+.|......+..
T Consensus 14 ~~~i~sl~fs~~G~-~litss~dDsl~LYd~~~g~~~~t-------------------i~skkyG~~~~~Fth~~~~~i~ 73 (311)
T KOG1446|consen 14 NGKINSLDFSDDGL-LLITSSEDDSLRLYDSLSGKQVKT-------------------INSKKYGVDLACFTHHSNTVIH 73 (311)
T ss_pred CCceeEEEecCCCC-EEEEecCCCeEEEEEcCCCceeeE-------------------eecccccccEEEEecCCceEEE
Confidence 67999999999998 567788899999999999987764 4456677889999887777777
Q ss_pred EeC--CCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccCCceeEEecCCCCCeEEE
Q 001477 426 AFS--KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSV 503 (1071)
Q Consensus 426 ~~~--dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i 503 (1071)
++. |.+|+..++.+++.++ .+.||...|++++.+|-+. .+++++.|++|++||++..++...+.....+ .+
T Consensus 74 sStk~d~tIryLsl~dNkylR---YF~GH~~~V~sL~~sP~~d--~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p--i~ 146 (311)
T KOG1446|consen 74 SSTKEDDTIRYLSLHDNKYLR---YFPGHKKRVNSLSVSPKDD--TFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP--IA 146 (311)
T ss_pred ccCCCCCceEEEEeecCceEE---EcCCCCceEEEEEecCCCC--eEEecccCCeEEeeEecCCCCceEEecCCCc--ce
Confidence 766 8899999999999887 8899999999999999998 8999999999999999988888776543333 45
Q ss_pred EecccCCccEEEEEecCCeEEEEEcCCCc--eeEEec---CCCCcEEEEEEccCCCEEEEeccCCCCCCeEEEEeCCCCc
Q 001477 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLG--SRVDYD---APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA 578 (1071)
Q Consensus 504 ~~~~~~~~~~l~s~~~d~~i~vwd~~~~~--~~~~~~---~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~ 578 (1071)
+|.|.+ -++|++...+.|++||++.-. +...+. ......+.+.|||||++++.++. .+.+++.|.-+|.
T Consensus 147 AfDp~G--LifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~----~s~~~~lDAf~G~ 220 (311)
T KOG1446|consen 147 AFDPEG--LIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTN----ASFIYLLDAFDGT 220 (311)
T ss_pred eECCCC--cEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeC----CCcEEEEEccCCc
Confidence 677654 788888888899999998753 222332 33568899999999999998864 7789999999999
Q ss_pred eeEEeecccccc--eeEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCcE
Q 001477 579 IKRTYSGFRKRS--LGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGI 656 (1071)
Q Consensus 579 ~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v 656 (1071)
...++.++.... -...+|+||++++++|+.||+|.+|++++++.+..+.+. +..++.++.|+|.-.++++++ ..+
T Consensus 221 ~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~-~~~~~~~~~fnP~~~mf~sa~--s~l 297 (311)
T KOG1446|consen 221 VKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGP-NGGPVSCVRFNPRYAMFVSAS--SNL 297 (311)
T ss_pred EeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCC-CCCCccccccCCceeeeeecC--ceE
Confidence 999998876532 246789999999999999999999999999999999875 345789999999877777665 467
Q ss_pred EEEEcC
Q 001477 657 KILANS 662 (1071)
Q Consensus 657 ~iw~~~ 662 (1071)
.+|-..
T Consensus 298 ~fw~p~ 303 (311)
T KOG1446|consen 298 VFWLPD 303 (311)
T ss_pred EEEecc
Confidence 788644
No 76
>PTZ00421 coronin; Provisional
Probab=99.96 E-value=7e-27 Score=260.85 Aligned_cols=287 Identities=14% Similarity=0.119 Sum_probs=222.3
Q ss_pred CCeEEEEeecCCCeEEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeEEEECC-CCCEEEE
Q 001477 347 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP-DGLMLGV 425 (1071)
Q Consensus 347 ~~V~~~~fsp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~sp-d~~~la~ 425 (1071)
..|.....++|+.. +++++.+..+..|+...+..+. +.............+.+|.+.|++++|+| ++++||+
T Consensus 21 ~~i~~~~~~~d~~~-~~~~n~~~~a~~w~~~gg~~v~------~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaS 93 (493)
T PTZ00421 21 LNVTPSTALWDCSN-TIACNDRFIAVPWQQLGSTAVL------KHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFT 93 (493)
T ss_pred eccccccccCCCCC-cEeECCceEEEEEecCCceEEe------eccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEE
Confidence 46677778888663 4566777788888876553221 11111111111234789999999999999 8999999
Q ss_pred EeCCCeEEEEEecCCCc----cceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccCCceeEEecCCCCCeE
Q 001477 426 AFSKHIVHLYTYNPTGE----LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVY 501 (1071)
Q Consensus 426 ~~~dg~i~iwd~~~~~~----~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~ 501 (1071)
|+.|++|++||+.++.. ......+.+|...|.+++|+|++.. +|++|+.|++|++||+.+++.+..+.+|...|.
T Consensus 94 gS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~-iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~ 172 (493)
T PTZ00421 94 ASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMN-VLASAGADMVVNVWDVERGKAVEVIKCHSDQIT 172 (493)
T ss_pred EeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCC-EEEEEeCCCEEEEEECCCCeEEEEEcCCCCceE
Confidence 99999999999987532 1233478899999999999998744 799999999999999999999999999999999
Q ss_pred EEEecccCCccEEEEEecCCeEEEEEcCCCceeEEecCCCCc-EEEEEEccCCCEEEEeccCCCCCCeEEEEeCCCCc-e
Q 001477 502 SVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNW-CTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA-I 579 (1071)
Q Consensus 502 ~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~-i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~-~ 579 (1071)
+++|+|++ .+|++++.|+.|++||+++++....+..|.+. ...+.|.+++..+++++.++..++.|++||+++.. +
T Consensus 173 sla~spdG--~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p 250 (493)
T PTZ00421 173 SLEWNLDG--SLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASP 250 (493)
T ss_pred EEEEECCC--CEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCc
Confidence 99999854 89999999999999999998888778777653 45778999988888877555568899999998754 4
Q ss_pred eEEeecccccceeEEEEeCCCCEEEEEe-CCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCC
Q 001477 580 KRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEG 644 (1071)
Q Consensus 580 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 644 (1071)
......+....+....|+++++++++++ .|+.|++||+.+++.+...... ...++..++|.|.-
T Consensus 251 ~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~-s~~~~~g~~~~pk~ 315 (493)
T PTZ00421 251 YSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYS-SVEPHKGLCMMPKW 315 (493)
T ss_pred eeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeecc-CCCCCcceEecccc
Confidence 4444434433566678999999999887 5999999999999887766543 23357788888853
No 77
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=8.1e-27 Score=217.67 Aligned_cols=274 Identities=15% Similarity=0.226 Sum_probs=237.3
Q ss_pred CCCCeEEEEeecCCCeEEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeEEEECC-CCCEE
Q 001477 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP-DGLML 423 (1071)
Q Consensus 345 h~~~V~~~~fsp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~sp-d~~~l 423 (1071)
|.+.|.+++|+.+|. -|++|+.|+++.+|++...+.... ....+|.+.|-.++|+| ....+
T Consensus 19 ~~~~v~Sv~wn~~g~-~lasgs~dktv~v~n~e~~r~~~~-----------------~~~~gh~~svdql~w~~~~~d~~ 80 (313)
T KOG1407|consen 19 HVQKVHSVAWNCDGT-KLASGSFDKTVSVWNLERDRFRKE-----------------LVYRGHTDSVDQLCWDPKHPDLF 80 (313)
T ss_pred hhhcceEEEEcccCc-eeeecccCCceEEEEecchhhhhh-----------------hcccCCCcchhhheeCCCCCcce
Confidence 778999999999998 689999999999999987744332 12578999999999998 56799
Q ss_pred EEEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccCCceeEEecCCCCCeEEE
Q 001477 424 GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSV 503 (1071)
Q Consensus 424 a~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i 503 (1071)
++++.|.+|++||+..+++... ... .+.-..+.|+|+|+ +++.++.|..|.+.|.++.+.....+ ....++-+
T Consensus 81 atas~dk~ir~wd~r~~k~~~~---i~~-~~eni~i~wsp~g~--~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~ 153 (313)
T KOG1407|consen 81 ATASGDKTIRIWDIRSGKCTAR---IET-KGENINITWSPDGE--YIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEI 153 (313)
T ss_pred EEecCCceEEEEEeccCcEEEE---eec-cCcceEEEEcCCCC--EEEEecCcccEEEEEecccceeehhc-ccceeeee
Confidence 9999999999999999987653 322 33344688999999 89999999999999999988776654 45667888
Q ss_pred EecccCCccEEEEEecCCeEEEEEcCCCceeEEecCCCCcEEEEEEccCCCEEEEeccCCCCCCeEEEEeCCCCceeEEe
Q 001477 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTY 583 (1071)
Q Consensus 504 ~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~ 583 (1071)
+|+.++ ++++.....|+|.|-.+...+++..+..|.....|+.|+|+|+++++|+. |..+.+||+..--+++.+
T Consensus 154 ~w~~~n--d~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsA----DAlvSLWD~~ELiC~R~i 227 (313)
T KOG1407|consen 154 SWNNSN--DLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSA----DALVSLWDVDELICERCI 227 (313)
T ss_pred eecCCC--CEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccc----cceeeccChhHhhhheee
Confidence 888443 78888888899999999999999999999999999999999999999986 788999999988888888
Q ss_pred ecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCC
Q 001477 584 SGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSD 653 (1071)
Q Consensus 584 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 653 (1071)
..+.- +|+.++|+.+|++|+++|+|..|-|-++++|..+..++..+ +...++|+|...+||.+.+|
T Consensus 228 sRldw-pVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~~---~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 228 SRLDW-PVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCEG---PTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred ccccC-ceEEEEeccCcceeeccCccceEEeEecccCCeEEEeeccC---CceeEEecCCCceeeEEecC
Confidence 88776 89999999999999999999999999999999999987653 56899999999999988775
No 78
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=3.6e-27 Score=224.84 Aligned_cols=274 Identities=18% Similarity=0.257 Sum_probs=222.1
Q ss_pred CCCeEEEEeecCCCeEEEEEcCCCeEEEEecCCC-cccccccceeecccccccchhhhhcccCCCCeeEEEECCCCCEEE
Q 001477 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSR-ERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1071)
Q Consensus 346 ~~~V~~~~fsp~g~~lla~gs~dg~i~iwd~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~la 424 (1071)
.+.|.+++|||....+++.||.||+|++|+++.. .... .....|.++|.+++|+.||..++
T Consensus 27 ~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~------------------ka~~~~~~PvL~v~WsddgskVf 88 (347)
T KOG0647|consen 27 EDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP------------------KAQQSHDGPVLDVCWSDDGSKVF 88 (347)
T ss_pred ccchheeEeccccCceEEecccCCceEEEEEecCCcccc------------------hhhhccCCCeEEEEEccCCceEE
Confidence 5689999999966668889999999999999873 3221 12457999999999999999999
Q ss_pred EEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccCCceeEEecCCCCCeEEEE
Q 001477 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 504 (1071)
Q Consensus 425 ~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~ 504 (1071)
+|+.|+.+++||+.+++.. .+..|.++|.++.|-+.....+|+|||.|++|+.||.+...++.++. -..++.++.
T Consensus 89 ~g~~Dk~~k~wDL~S~Q~~----~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~D 163 (347)
T KOG0647|consen 89 SGGCDKQAKLWDLASGQVS----QVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAAD 163 (347)
T ss_pred eeccCCceEEEEccCCCee----eeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeehh
Confidence 9999999999999998543 56789999999999887665589999999999999999999988876 456677775
Q ss_pred ecccCCccEEEEEecCCeEEEEEcCCCceeEE-ec-CCCCcEEEEEEccCCCEEEEeccCCCCCCeEEEEeCCCC--cee
Q 001477 505 PHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD-YD-APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG--AIK 580 (1071)
Q Consensus 505 ~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~-~~-~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~--~~~ 580 (1071)
.-. .+++.+..++.|.+|+++++..... .. ...-.++|++..+|....+.|+. +|.+.+..+..+ +.-
T Consensus 164 v~~----pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsi----EGrv~iq~id~~~~~~n 235 (347)
T KOG0647|consen 164 VLY----PMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSI----EGRVAIQYIDDPNPKDN 235 (347)
T ss_pred ccC----ceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeee----cceEEEEecCCCCccCc
Confidence 432 5889999999999999987654432 22 22347899999998888788875 777888777765 444
Q ss_pred EEeecccc--------cceeEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeC
Q 001477 581 RTYSGFRK--------RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTS 652 (1071)
Q Consensus 581 ~~~~~~~~--------~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 652 (1071)
.+|+.|.. -.|++++|+|....|+++|.||++.+||-+....+...+.+. .+|+++.|+.+|.+++.+..
T Consensus 236 FtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~--qpItcc~fn~~G~ifaYA~g 313 (347)
T KOG0647|consen 236 FTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHP--QPITCCSFNRNGSIFAYALG 313 (347)
T ss_pred eeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCC--CccceeEecCCCCEEEEEee
Confidence 56666652 147889999999999999999999999998877777766443 48999999999998887643
No 79
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=8.1e-28 Score=223.29 Aligned_cols=284 Identities=16% Similarity=0.249 Sum_probs=228.1
Q ss_pred EEEEeecC--CCeEEEEE-----cCCCeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeEEEECCC-CC
Q 001477 350 MSMDFHPQ--QQTILLVG-----TNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD-GL 421 (1071)
Q Consensus 350 ~~~~fsp~--g~~lla~g-----s~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd-~~ 421 (1071)
.++.|||- ++..+|++ ...|++.|-++..++.+. .+..+ .-.+.+..++||++ .+
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~--e~~s~---------------d~~D~LfdV~Wse~~e~ 74 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQ--ECQSY---------------DTEDGLFDVAWSENHEN 74 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeE--EEEee---------------ecccceeEeeecCCCcc
Confidence 56788884 33223332 246889999987554443 12112 23567999999995 55
Q ss_pred EEEEEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccCCceeEEecCCCCCeE
Q 001477 422 MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVY 501 (1071)
Q Consensus 422 ~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~ 501 (1071)
.+++++.||+++|||+.... .++..++.|...|.++.|++..++ .++++|.|++|++|+...++.+.+|.+|...|.
T Consensus 75 ~~~~a~GDGSLrl~d~~~~s--~Pi~~~kEH~~EV~Svdwn~~~r~-~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy 151 (311)
T KOG0277|consen 75 QVIAASGDGSLRLFDLTMPS--KPIHKFKEHKREVYSVDWNTVRRR-IFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIY 151 (311)
T ss_pred eEEEEecCceEEEeccCCCC--cchhHHHhhhhheEEeccccccce-eEEeeccCCceEeecCCCCcceEeecCCccEEE
Confidence 78889999999999954332 344477899999999999997776 678889999999999999999999999999999
Q ss_pred EEEecccCCccEEEEEecCCeEEEEEcCCCceeEEecCCCCcEEEEEEccCCC-EEEEeccCCCCCCeEEEEeCCCC-ce
Q 001477 502 SVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGT-RLFSCGTSKEGESHLVEWNESEG-AI 579 (1071)
Q Consensus 502 ~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~~~d~~~~i~iwd~~~~-~~ 579 (1071)
..+|+|.. ++.++++|.|+++++||++.......+..|...|.++.|+.-.. .+++++. |+.|+.||++.- .+
T Consensus 152 ~a~~sp~~-~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~v----d~~vr~wDir~~r~p 226 (311)
T KOG0277|consen 152 QAAFSPHI-PNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGV----DNLVRGWDIRNLRTP 226 (311)
T ss_pred EEecCCCC-CCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCC----CceEEEEehhhcccc
Confidence 99999974 48999999999999999999988888999999999999998555 4556654 888999999864 47
Q ss_pred eEEeecccccceeEEEEeCCC-CEEEEEeCCCcEEEEeCCCCc-eeEEEecCCCCCCcceEEEcC-CCCEEEEEeCCCcE
Q 001477 580 KRTYSGFRKRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDNMN-MLTTVDADGGLPASPRLRFNK-EGSLLAVTTSDNGI 656 (1071)
Q Consensus 580 ~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~v 656 (1071)
+..+.+|.- .|+.+.|||.. ..|++++.|-+++|||...+. .+.+...|.. .+..+.|++ ++.++|+.+.|+.+
T Consensus 227 l~eL~gh~~-AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtE--Fv~g~Dws~~~~~~vAs~gWDe~l 303 (311)
T KOG0277|consen 227 LFELNGHGL-AVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTE--FVCGLDWSLFDPGQVASTGWDELL 303 (311)
T ss_pred ceeecCCce-EEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccce--EEeccccccccCceeeecccccce
Confidence 778888877 89999999976 567889999999999998544 4444554443 678899998 77899999999999
Q ss_pred EEEEc
Q 001477 657 KILAN 661 (1071)
Q Consensus 657 ~iw~~ 661 (1071)
+||+.
T Consensus 304 ~Vw~p 308 (311)
T KOG0277|consen 304 YVWNP 308 (311)
T ss_pred eeecc
Confidence 99984
No 80
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.96 E-value=3.2e-26 Score=238.16 Aligned_cols=616 Identities=13% Similarity=0.198 Sum_probs=329.4
Q ss_pred hcccCCCCeeEEEECC-CCCEEEEEeCCCeEEEEEecCCCccc---eeeEeecccCCEEEEEEecCCCceEEEEEeCCCc
Q 001477 403 LLNDAAISVNRCVWGP-DGLMLGVAFSKHIVHLYTYNPTGELR---QHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKM 478 (1071)
Q Consensus 403 ~~~~h~~~v~~~~~sp-d~~~la~~~~dg~i~iwd~~~~~~~~---~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~ 478 (1071)
++.+|++.|+.+.||| +..+||+|+.|..|+||.+..+-... .-..+.+..-.|.++.|+|.... ++++ +..|+
T Consensus 74 ~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDg-il~s-~a~g~ 151 (1012)
T KOG1445|consen 74 ILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADG-ILAS-GAHGS 151 (1012)
T ss_pred eeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCc-eEEe-ccCce
Confidence 4788999999999999 67799999999999999998542211 11123233447899999998775 4444 45789
Q ss_pred EEEEEccCCceeEEecCCCCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCceeE-EecCCCC-cEEEEEEccCCCEE
Q 001477 479 IKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV-DYDAPGN-WCTMMAYSADGTRL 556 (1071)
Q Consensus 479 i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~-~~~~~~~-~i~~~~~s~~~~~l 556 (1071)
+++||+.+++.+..+.+|...|.+..|+. ||.+|++.+.|+.|+|||.+...... ...+|.+ .-..+.|.-+-..|
T Consensus 152 v~i~D~stqk~~~el~~h~d~vQSa~Wse--DG~llatscKdkqirifDPRa~~~piQ~te~H~~~rdsRv~w~Gn~~rl 229 (1012)
T KOG1445|consen 152 VYITDISTQKTAVELSGHTDKVQSADWSE--DGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRDSRVLWAGNWERL 229 (1012)
T ss_pred EEEEEcccCceeecccCCchhhhcccccc--CCceEeeecCCcceEEeCCccCCCccccccccccchhheeeeccchhhh
Confidence 99999999999999999999999999985 55999999999999999998765543 4455544 34567777666678
Q ss_pred EEeccCCCCCCeEEEEeCCC-CceeEEeecccccceeEEEEeCCCCEEEEEe-CCCcEEEEeCCCCceeEE--EecCCCC
Q 001477 557 FSCGTSKEGESHLVEWNESE-GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTT--VDADGGL 632 (1071)
Q Consensus 557 ~~~~~~~d~~~~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~--~~~~~~~ 632 (1071)
++.+.+......+++||.+. +.++.++.......|.---|.||.++++.+| .+.++..+.+...++... ++....
T Consensus 230 isTGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaGKG~~~l~~lE~~d~qPyLs~v~~~tle- 308 (1012)
T KOG1445|consen 230 ISTGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAGKGTNKLFMLEMQDRQPYLSHVFELTLE- 308 (1012)
T ss_pred hhcccchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEecCCcceEEEEEecCCCcchhhhhhhcch-
Confidence 87766555567799999875 4455655554443566667899988877655 778888888776543211 110000
Q ss_pred CCcceEEEcCCCCEEEEEeCCCcEEEEEcCCh----------hhhhhhhc---------------------CCccccccC
Q 001477 633 PASPRLRFNKEGSLLAVTTSDNGIKILANSDG----------VRLLRMLE---------------------GRAMDKNRC 681 (1071)
Q Consensus 633 ~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~----------~~~~~~~~---------------------~~~~~~~~~ 681 (1071)
......+.-|...+-+..+. ..+++.+... .+..+.+. |....+..+
T Consensus 309 ~~~~GA~lvpkral~VM~~E--V~rvlQLt~~~ivPi~y~VPRksyrdFH~DLfPeT~G~~p~~~ageWlnG~Nq~vqKv 386 (1012)
T KOG1445|consen 309 EQTLGATLVPKRALHVMDGE--VDRVLQLTKSSIVPIPYIVPRKSYRDFHSDLFPETRGAEPGCTAGEWLNGTNQVVQKV 386 (1012)
T ss_pred hhhccceecchhhhhhcchh--hhhheecccCceeecccccchhhhhhhhhhhCccccCCccCcCccceecCcccccccc
Confidence 00011112121111111100 0011111000 00000000 000000000
Q ss_pred CCC----------CCCCCCccccccCCCCccccccCCCCCCCCCCCCcccccccCCCCc-ccccc--cccccccccCccc
Q 001477 682 PSE----------PISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDG-SRLVD--VKPRVAEDVDKIK 748 (1071)
Q Consensus 682 ~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~v~ 748 (1071)
... +.....+.....++ +..+.. .|..+...-+.... .-.++ .+..+. ....++
T Consensus 387 Sl~Pa~r~h~~~pp~~~P~p~~a~t~s---f~~v~~---------ppaaP~~~~n~~~~~~~~Pd~~~qpaV~-~~~e~r 453 (1012)
T KOG1445|consen 387 SLAPAQRSHSPPPPEPVPTPKVAQTPS---FVPVPT---------PPAAPRPMSNNNSSSNNVPDVQEQPAVP-KKEEVR 453 (1012)
T ss_pred ccCchhccCCCCCCCCCCCcccccCCC---CccccC---------CCCCCCccccccccccCCCccccCCCcC-cchhhh
Confidence 000 00000000000000 000000 00000000000000 00011 011110 000011
Q ss_pred eeccCCCCCcccce----eeecCCCcCCCceEEEE------EecccchhhhccccceeEEEec----ccccCCCC--Ccc
Q 001477 749 SWRIPDISDPSQIK----ALRLPDSIAASKVVRLI------YTNSGLSLLALASNAVHKLWKW----QRTERNPS--GKA 812 (1071)
Q Consensus 749 ~w~~~~~~~~~~~~----~~~~~~~~~~~~v~~l~------~s~~g~~l~~~~~dg~v~vw~~----~~~~~~~~--g~~ 812 (1071)
-.+........... ..... .+..+++..+. .-|...- ++ .+-.+..+... ...++.+. |..
T Consensus 454 ~l~~~~~E~~~g~~~~~~dad~~-~g~sS~~s~~~~~~~~~~kP~S~p-lt-~~~s~~s~~~P~~~ksvPe~~~~~~g~~ 530 (1012)
T KOG1445|consen 454 ELDYRPYEKENGVHTPNADADST-QGNSSPISTISPEPVTIVKPASTP-LT-DSVSTPSVVGPAFGKSVPEQPPVNFGKP 530 (1012)
T ss_pred hhcccccccccCccCCCcccccc-cCCCCCccccCCCcccccCCCCcc-cc-cccccccccCccccccCCCCCCcccCCC
Confidence 00000000000000 00000 00000000000 0000000 00 00000000000 00000000 000
Q ss_pred c-------eeecce----------eccCCCCCccccc-----cCCCCCCCCCeEEEEEecCCcEEEEE---eCCeEEEEE
Q 001477 813 T-------ANVAPQ----------LWQPPSGTLMTND-----INESKPTEESAACIALSKNDSYVMSA---SGGKVSLFN 867 (1071)
Q Consensus 813 ~-------~~~~~~----------~~~~~~~~~~~~~-----~~~~~h~~~~v~~v~~s~d~~~la~~---~dg~i~vwd 867 (1071)
+ .+.+++ -+.-..|...... +....- .-+-.+=.|..+.+++|+- +.|.|.||+
T Consensus 531 ~sat~~v~~s~s~r~~s~v~G~iSKFRH~~Gt~ghks~hi~NLrnln~-~~PgEsnGfcan~~rvAVPL~g~gG~iai~e 609 (1012)
T KOG1445|consen 531 ISATNRVPLSQSVRPKSCVVGQISKFRHVDGTQGHKSAHISNLRNLNT-RLPGESNGFCANNKRVAVPLAGSGGVIAIYE 609 (1012)
T ss_pred ccccccccccccccccceeeccchheeeccCccccchhhhhhhhcccc-cCCCccCceeeccceEEEEecCCCceEEEEE
Confidence 0 000000 0000011100000 000000 1111222345566777754 379999999
Q ss_pred CCC-CeEEEE-EeC--CCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEccCC-------eEEEEecCcCCCeeEEEEcC-C
Q 001477 868 MMT-FKVMTM-FMS--PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD-------EVKTKLKGHQNRITGLAFSP-T 935 (1071)
Q Consensus 868 ~~~-~~~~~~-~~~--~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~-------~~~~~l~~h~~~v~~l~~s~-d 935 (1071)
+.. |++.-. +.+ ....|+.+.|.|.|...||++++||.|++|.+..+ .+...+.+|...|+++.|+| .
T Consensus 610 l~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLA 689 (1012)
T KOG1445|consen 610 LNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLA 689 (1012)
T ss_pred cCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchh
Confidence 874 222111 111 34579999999999999999999999999998754 34577899999999999999 4
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeeeeeecCCCCCCCCCCCceEEEEccCCCEEEE-EECCeEEEEeCCCCceeecCCCC
Q 001477 936 LNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDSKLECSRSWSPKD 1014 (1071)
Q Consensus 936 ~~~l~s~~~d~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~i~vwd~~~~~~~~~~~~~ 1014 (1071)
...|++++.|-+|++||+.+.+. .....+|. +.|.+++|||||+.+|+ +.||+|+||+-.......+....
T Consensus 690 advLa~asyd~Ti~lWDl~~~~~-----~~~l~gHt---dqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~g 761 (1012)
T KOG1445|consen 690 ADVLAVASYDSTIELWDLANAKL-----YSRLVGHT---DQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKG 761 (1012)
T ss_pred hhHhhhhhccceeeeeehhhhhh-----hheeccCc---CceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCC
Confidence 57899999999999999999663 33455666 78999999999999998 78999999999444444444333
Q ss_pred CCCCCeeEEEEecCCcEEEEEeCCC----eEEEEEcCCCe
Q 001477 1015 ALPAPISSAIYSCDGLLVYAGFCDG----AIGVFDAETLR 1050 (1071)
Q Consensus 1015 ~h~~~v~~~~~s~dg~~l~t~~~Dg----~i~vwd~~~~~ 1050 (1071)
....+-..+.|..||+++++.+.|+ .|.+||..+..
T Consensus 762 pvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~ 801 (1012)
T KOG1445|consen 762 PVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLD 801 (1012)
T ss_pred CccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhcc
Confidence 3345566788999999999888775 48888876554
No 81
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=7.5e-27 Score=217.88 Aligned_cols=277 Identities=14% Similarity=0.222 Sum_probs=234.2
Q ss_pred EeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccCCceeE--EecCCCCCeEEEEecccCCccEEEEEecCCeEEE
Q 001477 448 EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY--TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKA 525 (1071)
Q Consensus 448 ~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~--~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~v 525 (1071)
.+++|.+.|.+++|+.+|. .+++|+.|+++.+|++...+... ...+|.+.|-.++|+|..+ +.+++++.|.+|++
T Consensus 15 ~~~~~~~~v~Sv~wn~~g~--~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~-d~~atas~dk~ir~ 91 (313)
T KOG1407|consen 15 ELQGHVQKVHSVAWNCDGT--KLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHP-DLFATASGDKTIRI 91 (313)
T ss_pred HhhhhhhcceEEEEcccCc--eeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCC-cceEEecCCceEEE
Confidence 5668999999999999999 79999999999999998876554 4468999999999998755 89999999999999
Q ss_pred EEcCCCceeEEecCCCCcEEEEEEccCCCEEEEeccCCCCCCeEEEEeCCCCceeEEeecccccceeEEEEeCCCCEEEE
Q 001477 526 WLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLA 605 (1071)
Q Consensus 526 wd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 605 (1071)
||++..++..........+ -++|+|+|.+++++.. +..|...|.++.+.....+... .++-++|+.++++++.
T Consensus 92 wd~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~k----dD~it~id~r~~~~~~~~~~~~--e~ne~~w~~~nd~Ffl 164 (313)
T KOG1407|consen 92 WDIRSGKCTARIETKGENI-NITWSPDGEYIAVGNK----DDRITFIDARTYKIVNEEQFKF--EVNEISWNNSNDLFFL 164 (313)
T ss_pred EEeccCcEEEEeeccCcce-EEEEcCCCCEEEEecC----cccEEEEEecccceeehhcccc--eeeeeeecCCCCEEEE
Confidence 9999999988777665554 5689999999999864 6679999999888777665443 5777899988888888
Q ss_pred EeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCChhhhhhhhcCCccccccCCCCC
Q 001477 606 AGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEP 685 (1071)
Q Consensus 606 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 685 (1071)
....|.|.|.....-+++..++.|.. ...|+.|+|+|+++|+|+.|..+.+||+..- -+.+.+
T Consensus 165 t~GlG~v~ILsypsLkpv~si~AH~s--nCicI~f~p~GryfA~GsADAlvSLWD~~EL-iC~R~i-------------- 227 (313)
T KOG1407|consen 165 TNGLGCVEILSYPSLKPVQSIKAHPS--NCICIEFDPDGRYFATGSADALVSLWDVDEL-ICERCI-------------- 227 (313)
T ss_pred ecCCceEEEEeccccccccccccCCc--ceEEEEECCCCceEeeccccceeeccChhHh-hhheee--------------
Confidence 88889999999999999999987764 6889999999999999999999999998643 111100
Q ss_pred CCCCCccccccCCCCccccccCCCCCCCCCCCCcccccccCCCCcccccccccccccccCccceeccCCCCCcccceeee
Q 001477 686 ISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALR 765 (1071)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~ 765 (1071)
T Consensus 228 -------------------------------------------------------------------------------- 227 (313)
T KOG1407|consen 228 -------------------------------------------------------------------------------- 227 (313)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCcCCCceEEEEEecccchhhhccccceeEEEecccccCCCCCccceeecceeccCCCCCccccccCCCCCCCCCeEE
Q 001477 766 LPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAAC 845 (1071)
Q Consensus 766 ~~~~~~~~~v~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~ 845 (1071)
.. + .-+|..
T Consensus 228 --------------------------------------------------------------------sR--l-dwpVRT 236 (313)
T KOG1407|consen 228 --------------------------------------------------------------------SR--L-DWPVRT 236 (313)
T ss_pred --------------------------------------------------------------------cc--c-cCceEE
Confidence 00 3 677889
Q ss_pred EEEecCCcEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCCEEEEEeCCC
Q 001477 846 IALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDS 904 (1071)
Q Consensus 846 v~~s~d~~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg 904 (1071)
+.||.||++||+|+ |.-|-|-++++|..+..++ +.++...++|+| ...+||.++.|.
T Consensus 237 lSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHP-k~~LLAyA~ddk 294 (313)
T KOG1407|consen 237 LSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHP-KRPLLAYACDDK 294 (313)
T ss_pred EEeccCcceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecC-CCceeeEEecCC
Confidence 99999999999999 8899999999999988887 778899999999 899999988763
No 82
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.7e-27 Score=252.08 Aligned_cols=279 Identities=16% Similarity=0.240 Sum_probs=239.3
Q ss_pred eEEEEeecCCCeEEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeEEEECCCCCEEEEEeC
Q 001477 349 VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFS 428 (1071)
Q Consensus 349 V~~~~fsp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~la~~~~ 428 (1071)
..-+.||..+ +||+|. ...|.+|+..+++...- ..-+...|+++.|+++|.+||+|..
T Consensus 180 ~nlldWss~n--~laVal-g~~vylW~~~s~~v~~l-------------------~~~~~~~vtSv~ws~~G~~LavG~~ 237 (484)
T KOG0305|consen 180 LNLLDWSSAN--VLAVAL-GQSVYLWSASSGSVTEL-------------------CSFGEELVTSVKWSPDGSHLAVGTS 237 (484)
T ss_pred hhHhhcccCC--eEEEEe-cceEEEEecCCCceEEe-------------------EecCCCceEEEEECCCCCEEEEeec
Confidence 3446788555 567664 55899999998874321 2224788999999999999999999
Q ss_pred CCeEEEEEecCCCccceeeEeec-ccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccCCceeEE-ecCCCCCeEEEEec
Q 001477 429 KHIVHLYTYNPTGELRQHLEIDA-HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT-FEGHEAPVYSVCPH 506 (1071)
Q Consensus 429 dg~i~iwd~~~~~~~~~~~~~~~-h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~~h~~~v~~i~~~ 506 (1071)
+|.|.|||..+.+.++ .+.+ |...|-+++|. +. .+.+|+.|+.|..+|++..+.... +.+|...|..+.|+
T Consensus 238 ~g~v~iwD~~~~k~~~---~~~~~h~~rvg~laW~--~~--~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws 310 (484)
T KOG0305|consen 238 DGTVQIWDVKEQKKTR---TLRGSHASRVGSLAWN--SS--VLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWS 310 (484)
T ss_pred CCeEEEEehhhccccc---cccCCcCceeEEEecc--Cc--eEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEEC
Confidence 9999999999887666 6667 99999999998 44 789999999999999998876655 88999999999999
Q ss_pred ccCCccEEEEEecCCeEEEEEcCCCceeEEecCCCCcEEEEEEccC-CCEEEEeccCCCCCCeEEEEeCCCCceeEEeec
Q 001477 507 HKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSAD-GTRLFSCGTSKEGESHLVEWNESEGAIKRTYSG 585 (1071)
Q Consensus 507 ~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~ 585 (1071)
+++ .++++|+.|+.+.|||....+....+..|...|.+++|+|- ...||+|+. ..|+.|++||..++..+..+..
T Consensus 311 ~d~--~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGG--s~D~~i~fwn~~~g~~i~~vdt 386 (484)
T KOG0305|consen 311 PDG--NQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGG--SADRCIKFWNTNTGARIDSVDT 386 (484)
T ss_pred CCC--CeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCC--CcccEEEEEEcCCCcEeccccc
Confidence 865 89999999999999999888999999999999999999994 556677764 4689999999999999988776
Q ss_pred ccccceeEEEEeCCCCEEEE--EeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 001477 586 FRKRSLGVVQFDTTRNRFLA--AGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSD 663 (1071)
Q Consensus 586 ~~~~~v~~~~~~~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~ 663 (1071)
.. .|+.+.|++..+.|++ |..++.|.||++.+.+.+..+.+|.. .|..++++|||..+++|+.|.++++|++-+
T Consensus 387 gs--QVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~--RVl~la~SPdg~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 387 GS--QVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTS--RVLYLALSPDGETIVTGAADETLRFWNLFD 462 (484)
T ss_pred CC--ceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcc--eeEEEEECCCCCEEEEecccCcEEeccccC
Confidence 54 6999999999988777 44778999999999999999887765 799999999999999999999999999765
Q ss_pred h
Q 001477 664 G 664 (1071)
Q Consensus 664 ~ 664 (1071)
.
T Consensus 463 ~ 463 (484)
T KOG0305|consen 463 E 463 (484)
T ss_pred C
Confidence 3
No 83
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=1.8e-27 Score=226.78 Aligned_cols=313 Identities=17% Similarity=0.208 Sum_probs=244.6
Q ss_pred ceeeEEeecCCCCeEEEEeecCCCeEEEEEcCCCeEEEEecCCCcccc-cccceeecccccccchhhhhcccCCCCeeEE
Q 001477 336 TKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLA-HKPFKVWDISAASMPLQNALLNDAAISVNRC 414 (1071)
Q Consensus 336 ~~~~~~~~~h~~~V~~~~fsp~g~~lla~gs~dg~i~iwd~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~ 414 (1071)
..+......|++++.+.+|||||. ++|+|+.|-.|+|.|++..-... ..++..-+.... .+ ....+..|.++|+++
T Consensus 102 ~yEt~ylt~HK~~cR~aafs~DG~-lvATGsaD~SIKildvermlaks~~~em~~~~~qa~-hP-vIRTlYDH~devn~l 178 (430)
T KOG0640|consen 102 EYETKYLTSHKSPCRAAAFSPDGS-LVATGSADASIKILDVERMLAKSKPKEMISGDTQAR-HP-VIRTLYDHVDEVNDL 178 (430)
T ss_pred ccceEEEeecccceeeeeeCCCCc-EEEccCCcceEEEeehhhhhhhcchhhhccCCcccC-Cc-eEeehhhccCcccce
Confidence 345555666999999999999997 99999999999999997321110 000100011111 11 112367899999999
Q ss_pred EECCCCCEEEEEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccCCceeEEe-
Q 001477 415 VWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF- 493 (1071)
Q Consensus 415 ~~spd~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~- 493 (1071)
.|.|....|++|+.|++|+++|.......+..+.+ ....+|.++.|+|.|. +|+.|..-.++++||+.+-++...-
T Consensus 179 ~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~-qd~~~vrsiSfHPsGe--fllvgTdHp~~rlYdv~T~Qcfvsan 255 (430)
T KOG0640|consen 179 DFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVF-QDTEPVRSISFHPSGE--FLLVGTDHPTLRLYDVNTYQCFVSAN 255 (430)
T ss_pred eecchhheEEeccCCCeEEEEecccHHHHHHHHHh-hccceeeeEeecCCCc--eEEEecCCCceeEEeccceeEeeecC
Confidence 99999999999999999999999875544433333 2456899999999999 8999999999999999998876543
Q ss_pred --cCCCCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCceeEEec-CCC-CcEEEEEEccCCCEEEEeccCCCCCCeE
Q 001477 494 --EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD-APG-NWCTMMAYSADGTRLFSCGTSKEGESHL 569 (1071)
Q Consensus 494 --~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~-~~~-~~i~~~~~s~~~~~l~~~~~~~d~~~~i 569 (1071)
..|.+.|+++.+++.+ .+.++++.||.|++||--+.+++..+. .|+ ..|.+..|..+|+++++.+. |..+
T Consensus 256 Pd~qht~ai~~V~Ys~t~--~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~----DS~v 329 (430)
T KOG0640|consen 256 PDDQHTGAITQVRYSSTG--SLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGK----DSTV 329 (430)
T ss_pred cccccccceeEEEecCCc--cEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCC----ccee
Confidence 3599999999999765 899999999999999988888776553 343 48999999999999999874 8899
Q ss_pred EEEeCCCCceeEEeeccccc----ceeEEEEeCCCCEEEEEe-CCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCC
Q 001477 570 VEWNESEGAIKRTYSGFRKR----SLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEG 644 (1071)
Q Consensus 570 ~iwd~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 644 (1071)
++|.+.+++.+..+.+.... --+...|+....+++.-. ..+.+.-||.++...+..+.. +|...+..+.-+|.+
T Consensus 330 kLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~sl-gHn~a~R~i~HSP~~ 408 (430)
T KOG0640|consen 330 KLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSL-GHNGAVRWIVHSPVE 408 (430)
T ss_pred eeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhccc-CCCCCceEEEeCCCC
Confidence 99999999999999876211 112345777778887755 457899999999887776653 455688999999999
Q ss_pred CEEEEEeCCCcEEEEEc
Q 001477 645 SLLAVTTSDNGIKILAN 661 (1071)
Q Consensus 645 ~~l~~~~~dg~v~iw~~ 661 (1071)
..+.+++.|..+|+|--
T Consensus 409 p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 409 PAFMTCSDDFRARFWYR 425 (430)
T ss_pred Cceeeecccceeeeeee
Confidence 99999999999999964
No 84
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=5.1e-27 Score=230.69 Aligned_cols=282 Identities=20% Similarity=0.299 Sum_probs=235.3
Q ss_pred cccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccCCceeEEecCCCCCeEEEEecccC-CccEEEEEecCCeEEEEEcC
Q 001477 451 AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKE-SIQFIFSTAIDGKIKAWLYD 529 (1071)
Q Consensus 451 ~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~-~~~~l~s~~~d~~i~vwd~~ 529 (1071)
.|...|.++... ++ .|++|+.||.+++|| ..|+.+..+.||.++|.+++|.... ....+++++.|.++++|-++
T Consensus 103 ~hdDWVSsv~~~--~~--~IltgsYDg~~riWd-~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~ 177 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SK--WILTGSYDGTSRIWD-LKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWN 177 (423)
T ss_pred cchhhhhhhccc--Cc--eEEEeecCCeeEEEe-cCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEec
Confidence 478888888877 45 799999999999999 7899999999999999988765433 22469999999999999988
Q ss_pred CCceeE----EecCCCCcEEEEEEccCCCEEEEeccCCCCCCeEEEEeCC-------------------------CCcee
Q 001477 530 YLGSRV----DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES-------------------------EGAIK 580 (1071)
Q Consensus 530 ~~~~~~----~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~-------------------------~~~~~ 580 (1071)
.+.... ...+|...|.+++..++|..+++++. |.+|.+|+.. ++.++
T Consensus 178 ~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~----D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~ 253 (423)
T KOG0313|consen 178 VGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSW----DTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPL 253 (423)
T ss_pred CchhhhhHHhHhcccccceeEEEecCCCCeEEeecc----cceeeecccCCCccccccccchhhhhhhhhhhcccccCce
Confidence 766543 34589999999999999999999987 7789999931 12356
Q ss_pred EEeecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEE
Q 001477 581 RTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILA 660 (1071)
Q Consensus 581 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~ 660 (1071)
.++.+|.. .|.++.|++ ...+++++.|.+|+.||+.++.....+... ...+++.++|...+|++|+.|..+++||
T Consensus 254 vtl~GHt~-~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~---ksl~~i~~~~~~~Ll~~gssdr~irl~D 328 (423)
T KOG0313|consen 254 VTLEGHTE-PVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTN---KSLNCISYSPLSKLLASGSSDRHIRLWD 328 (423)
T ss_pred EEeccccc-ceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecC---cceeEeecccccceeeecCCCCceeecC
Confidence 67889988 899999998 678999999999999999999998888654 3689999999999999999999999999
Q ss_pred cCChhhhhhhhcCCccccccCCCCCCCCCCccccccCCCCccccccCCCCCCCCCCCCcccccccCCCCccccccccccc
Q 001477 661 NSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRV 740 (1071)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 740 (1071)
.+++.
T Consensus 329 PR~~~--------------------------------------------------------------------------- 333 (423)
T KOG0313|consen 329 PRTGD--------------------------------------------------------------------------- 333 (423)
T ss_pred CCCCC---------------------------------------------------------------------------
Confidence 76550
Q ss_pred ccccCccceeccCCCCCcccceeeecCCCcCCCceEEEEEecccchhhhccccceeEEEecccccCCCCCccceeeccee
Q 001477 741 AEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQL 820 (1071)
Q Consensus 741 ~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~~~~ 820 (1071)
+.+...
T Consensus 334 --------------------------------gs~v~~------------------------------------------ 339 (423)
T KOG0313|consen 334 --------------------------------GSVVSQ------------------------------------------ 339 (423)
T ss_pred --------------------------------CceeEE------------------------------------------
Confidence 000000
Q ss_pred ccCCCCCccccccCCCCCCCCCeEEEEEecCCc-EEEEEe-CCeEEEEECCCCe-EEEEEeCCCCCeEEEEEcCCCCCEE
Q 001477 821 WQPPSGTLMTNDINESKPTEESAACIALSKNDS-YVMSAS-GGKVSLFNMMTFK-VMTMFMSPPPAATFLAFHPQDNNII 897 (1071)
Q Consensus 821 ~~~~~~~~~~~~~~~~~h~~~~v~~v~~s~d~~-~la~~~-dg~i~vwd~~~~~-~~~~~~~~~~~i~~l~~sp~~~~~l 897 (1071)
.+.+ | .+.|.++.++|... .+++|+ |+++++||+++.+ .+..+.+|...|.++.|.. +..|
T Consensus 340 -----------s~~g--H-~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~--~~~I 403 (423)
T KOG0313|consen 340 -----------SLIG--H-KNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNE--GGLI 403 (423)
T ss_pred -----------eeec--c-hhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccC--CceE
Confidence 1223 7 88899999999655 567777 9999999999877 8999999999999999984 6799
Q ss_pred EEEeCCCeEEEEEc
Q 001477 898 AIGMEDSSVQIYNV 911 (1071)
Q Consensus 898 a~g~~dg~v~vwd~ 911 (1071)
++|+.|.+|+|+.-
T Consensus 404 vSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 404 VSGGADNKLRIFKG 417 (423)
T ss_pred EeccCcceEEEecc
Confidence 99999999999864
No 85
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.9e-27 Score=259.25 Aligned_cols=300 Identities=16% Similarity=0.210 Sum_probs=216.4
Q ss_pred CCCCeEEEEeecCCCeEEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeEEEECC---CCC
Q 001477 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP---DGL 421 (1071)
Q Consensus 345 h~~~V~~~~fsp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~sp---d~~ 421 (1071)
|.+.||++.||+||+ |||+|+.||.|+||.+...+...- ..-+... .... +. ..+.+..+.-++ .++
T Consensus 266 h~gaIw~mKFS~DGK-yLAsaGeD~virVWkVie~e~~~~---~~~~~~~--~~~~---~~-~~s~~~p~~s~~~~~~~~ 335 (712)
T KOG0283|consen 266 HKGAIWAMKFSHDGK-YLASAGEDGVIRVWKVIESERMRV---AEGDSSC--MYFE---YN-ANSQIEPSTSSEEKISSR 335 (712)
T ss_pred cCCcEEEEEeCCCCc-eeeecCCCceEEEEEEeccchhcc---cccccch--hhhh---hh-hccccCcccccccccccc
Confidence 899999999999998 799999999999999976433210 0000000 0000 00 000011111111 011
Q ss_pred --EEEEEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccCCceeEEecCCCCC
Q 001477 422 --MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAP 499 (1071)
Q Consensus 422 --~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~ 499 (1071)
..-.+.....+.+-+..-.-.-+....+.||.+.|.++.||.++ +|++++.|++|++|++...++++.|. |...
T Consensus 336 ~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~---fLLSSSMDKTVRLWh~~~~~CL~~F~-Hndf 411 (712)
T KOG0283|consen 336 TSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN---FLLSSSMDKTVRLWHPGRKECLKVFS-HNDF 411 (712)
T ss_pred ccccccccCCccccCCCccccccccchhhhhccchhheecccccCC---eeEeccccccEEeecCCCcceeeEEe-cCCe
Confidence 11112222222211111111112334788999999999999876 69999999999999999999999996 9999
Q ss_pred eEEEEecccCCccEEEEEecCCeEEEEEcCCCceeEEecCCCCcEEEEEEccCCCEEEEeccCCCCCCeEEEEeCCCCce
Q 001477 500 VYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI 579 (1071)
Q Consensus 500 v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~ 579 (1071)
|+|++|+|..| +++++|+-|+.+|+|++...+... ...-..-|++++|.|||++.+.|+. +|.+++|+...-+.
T Consensus 412 VTcVaFnPvDD-ryFiSGSLD~KvRiWsI~d~~Vv~-W~Dl~~lITAvcy~PdGk~avIGt~----~G~C~fY~t~~lk~ 485 (712)
T KOG0283|consen 412 VTCVAFNPVDD-RYFISGSLDGKVRLWSISDKKVVD-WNDLRDLITAVCYSPDGKGAVIGTF----NGYCRFYDTEGLKL 485 (712)
T ss_pred eEEEEecccCC-CcEeecccccceEEeecCcCeeEe-ehhhhhhheeEEeccCCceEEEEEe----ccEEEEEEccCCeE
Confidence 99999999865 899999999999999987554443 3333478999999999999999987 78899999987776
Q ss_pred eEEeeccc-------ccceeEEEEeCCC-CEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEe
Q 001477 580 KRTYSGFR-------KRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTT 651 (1071)
Q Consensus 580 ~~~~~~~~-------~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 651 (1071)
...+.-+. ...|+.+.|.|.. ..++..+.|..|+|+|.++..++..+++......-....|+.||++|++++
T Consensus 486 ~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~s 565 (712)
T KOG0283|consen 486 VSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSAS 565 (712)
T ss_pred EEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEee
Confidence 65543221 1269999998754 468888899999999999999999888765555557789999999999999
Q ss_pred CCCcEEEEEcCCh
Q 001477 652 SDNGIKILANSDG 664 (1071)
Q Consensus 652 ~dg~v~iw~~~~~ 664 (1071)
+|..|++|+....
T Consensus 566 eDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 566 EDSWVYIWKNDSF 578 (712)
T ss_pred cCceEEEEeCCCC
Confidence 9999999998544
No 86
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=9.2e-27 Score=259.47 Aligned_cols=283 Identities=17% Similarity=0.282 Sum_probs=247.0
Q ss_pred CCCCeEEEEeecCCCeEEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeEEEECCCCCEEE
Q 001477 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1071)
Q Consensus 345 h~~~V~~~~fsp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~la 424 (1071)
+...+.|..|. ++ .+++|+.|++|++||..++..+.. -+.||.+.|+++++..-+.+|+
T Consensus 207 ~~~~~~~~q~~-~~--~~~~~s~~~tl~~~~~~~~~~i~~------------------~l~GH~g~V~~l~~~~~~~~lv 265 (537)
T KOG0274|consen 207 DDHVVLCLQLH-DG--FFKSGSDDSTLHLWDLNNGYLILT------------------RLVGHFGGVWGLAFPSGGDKLV 265 (537)
T ss_pred Ccchhhhheee-cC--eEEecCCCceeEEeecccceEEEe------------------eccCCCCCceeEEEecCCCEEE
Confidence 56789999999 44 478899999999999998876643 1679999999999988889999
Q ss_pred EEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccCCceeEEecCCCCCeEEEE
Q 001477 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 504 (1071)
Q Consensus 425 ~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~ 504 (1071)
+|+.|.++++||..+|++.. .+.+|...|.++...+. ++++|+.|.+|++|++.+++++..+.+|.++|.++.
T Consensus 266 sgS~D~t~rvWd~~sg~C~~---~l~gh~stv~~~~~~~~----~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~ 338 (537)
T KOG0274|consen 266 SGSTDKTERVWDCSTGECTH---SLQGHTSSVRCLTIDPF----LLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQ 338 (537)
T ss_pred EEecCCcEEeEecCCCcEEE---EecCCCceEEEEEccCc----eEeeccCCceEEEEeccCcceEEEeccccccEEEEE
Confidence 99999999999999998877 88899999999987543 688999999999999999999999999999999999
Q ss_pred ecccCCccEEEEEecCCeEEEEEcCCCceeEEecCCCCcEEEEEEccCCCEEEEeccCCCCCCeEEEEeCCCC-ceeEEe
Q 001477 505 PHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG-AIKRTY 583 (1071)
Q Consensus 505 ~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~-~~~~~~ 583 (1071)
.+ +.++++|+.|++|++||+.+.+....+.+|...|.++.+.+. ..+++++. |+.|++||+.+. +++.++
T Consensus 339 ~~----~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~----D~~IkvWdl~~~~~c~~tl 409 (537)
T KOG0274|consen 339 LD----EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSL----DTTIKVWDLRTKRKCIHTL 409 (537)
T ss_pred ec----CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeee----ccceEeecCCchhhhhhhh
Confidence 86 379999999999999999999999999999999999988766 88999886 688999999999 999999
Q ss_pred ecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 001477 584 SGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSD 663 (1071)
Q Consensus 584 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~ 663 (1071)
.+|.. .+..+ ...++++++++.|++|++||..+++++..+..+ +...|..+++. ...+++++.||.+++||+.+
T Consensus 410 ~~h~~-~v~~l--~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~-~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~ 483 (537)
T KOG0274|consen 410 QGHTS-LVSSL--LLRDNFLVSSSADGTIKLWDAEEGECLRTLEGR-HVGGVSALALG--KEEILCSSDDGSVKLWDLRS 483 (537)
T ss_pred cCCcc-ccccc--ccccceeEeccccccEEEeecccCceeeeeccC-CcccEEEeecC--cceEEEEecCCeeEEEeccc
Confidence 99887 55444 445689999999999999999999999999875 33467777665 46889999999999999999
Q ss_pred hhhhhhhh
Q 001477 664 GVRLLRML 671 (1071)
Q Consensus 664 ~~~~~~~~ 671 (1071)
+ ...+.+
T Consensus 484 ~-~~~~~l 490 (537)
T KOG0274|consen 484 G-TLIRTL 490 (537)
T ss_pred C-chhhhh
Confidence 8 444433
No 87
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=2.8e-27 Score=225.54 Aligned_cols=253 Identities=15% Similarity=0.272 Sum_probs=206.0
Q ss_pred cccCCCCeeEEEECCCCCEEEEEeCCCeEEEEEecC------------CC---ccceeeEeecccCCEEEEEEecCCCce
Q 001477 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNP------------TG---ELRQHLEIDAHVGGVNDIAFAHPNKQL 468 (1071)
Q Consensus 404 ~~~h~~~v~~~~~spd~~~la~~~~dg~i~iwd~~~------------~~---~~~~~~~~~~h~~~v~~~~~s~d~~~~ 468 (1071)
+..|++++.+.+|||||.++|+|+.|..|+|.|++. +. .-..+.++..|..+|+++.|+|...
T Consensus 108 lt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~-- 185 (430)
T KOG0640|consen 108 LTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET-- 185 (430)
T ss_pred EeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh--
Confidence 567999999999999999999999999999999871 11 1112346778999999999999998
Q ss_pred EEEEEeCCCcEEEEEccCCceeEEec--CCCCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCceeEEe---cCCCCc
Q 001477 469 CIVTCGDDKMIKVWDVVAGRKQYTFE--GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY---DAPGNW 543 (1071)
Q Consensus 469 ~l~s~~~d~~i~iwd~~~~~~~~~~~--~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~---~~~~~~ 543 (1071)
+|++|+.|++|+++|.......+.++ ....+|.++.|+|.+ .+|+.|....++++||+.+.++...- ..|...
T Consensus 186 ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsG--efllvgTdHp~~rlYdv~T~QcfvsanPd~qht~a 263 (430)
T KOG0640|consen 186 ILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSG--EFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGA 263 (430)
T ss_pred eEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCC--ceEEEecCCCceeEEeccceeEeeecCcccccccc
Confidence 99999999999999987654333222 256789999999976 89999999999999999998876643 456779
Q ss_pred EEEEEEccCCCEEEEeccCCCCCCeEEEEeCCCCceeEEeec-ccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCCce
Q 001477 544 CTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSG-FRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM 622 (1071)
Q Consensus 544 i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 622 (1071)
|+++.+++.|+..++++. ||.|++||--+++++.++.. |.+..|.+..|..+++++++.|.|..+++|.+.++++
T Consensus 264 i~~V~Ys~t~~lYvTaSk----DG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~ 339 (430)
T KOG0640|consen 264 ITQVRYSSTGSLYVTASK----DGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRM 339 (430)
T ss_pred eeEEEecCCccEEEEecc----CCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCce
Confidence 999999999999999974 78899999999999988864 5555799999999999999999999999999999999
Q ss_pred eEEEecCCC---CCCcceEEEcCCCCEEEEEeC-CCcEEEEEcCCh
Q 001477 623 LTTVDADGG---LPASPRLRFNKEGSLLAVTTS-DNGIKILANSDG 664 (1071)
Q Consensus 623 ~~~~~~~~~---~~~v~~~~~s~~~~~l~~~~~-dg~v~iw~~~~~ 664 (1071)
+....+.+. ...-+...|+....+++.-.+ .+.+.-||.++.
T Consensus 340 l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRta 385 (430)
T KOG0640|consen 340 LKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTA 385 (430)
T ss_pred EEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccch
Confidence 999876532 122245566666666555443 567777887666
No 88
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.2e-25 Score=215.42 Aligned_cols=295 Identities=15% Similarity=0.296 Sum_probs=244.2
Q ss_pred ceeEEecCCCCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCceeEEecCCCCcEEEEEEccCCCEEEEeccCCCCCC
Q 001477 488 RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGES 567 (1071)
Q Consensus 488 ~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~ 567 (1071)
++.+.|....+.|+++.|++++ ..+++++.|.++++||..++.....+..+...+..++|....+.++.++. ..|.
T Consensus 5 ~~ak~f~~~~~~i~sl~fs~~G--~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sSt--k~d~ 80 (311)
T KOG1446|consen 5 RPAKVFRETNGKINSLDFSDDG--LLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSST--KEDD 80 (311)
T ss_pred ccccccccCCCceeEEEecCCC--CEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccC--CCCC
Confidence 3445566668899999999754 89999999999999999999999999888888999999888777777664 3467
Q ss_pred eEEEEeCCCCceeEEeecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEE
Q 001477 568 HLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLL 647 (1071)
Q Consensus 568 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 647 (1071)
.|+..++.+.+.++.|.||.+ .|.+++.+|-+..+++++.|++|++||++..++...+...+. ..++|.|+|-++
T Consensus 81 tIryLsl~dNkylRYF~GH~~-~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~----pi~AfDp~GLif 155 (311)
T KOG1446|consen 81 TIRYLSLHDNKYLRYFPGHKK-RVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR----PIAAFDPEGLIF 155 (311)
T ss_pred ceEEEEeecCceEEEcCCCCc-eEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC----cceeECCCCcEE
Confidence 899999999999999999998 999999999999999999999999999998888887765433 568999999999
Q ss_pred EEEeCCCcEEEEEcCChhhhhhhhcCCccccccCCCCCCCCCCccccccCCCCccccccCCCCCCCCCCCCcccccccCC
Q 001477 648 AVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGT 727 (1071)
Q Consensus 648 ~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 727 (1071)
|++...+.|++||++.-.+ + +
T Consensus 156 A~~~~~~~IkLyD~Rs~dk------g-P---------------------------------------------------- 176 (311)
T KOG1446|consen 156 ALANGSELIKLYDLRSFDK------G-P---------------------------------------------------- 176 (311)
T ss_pred EEecCCCeEEEEEecccCC------C-C----------------------------------------------------
Confidence 9999888999999864300 0 0
Q ss_pred CCcccccccccccccccCccceeccCCCCCcccceeeecCCCcCCCceEEEEEecccchhhhccccceeEEEecccccCC
Q 001477 728 IDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERN 807 (1071)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~ 807 (1071)
... |..+
T Consensus 177 ---------------------------------F~t----------------f~i~------------------------ 183 (311)
T KOG1446|consen 177 ---------------------------------FTT----------------FSIT------------------------ 183 (311)
T ss_pred ---------------------------------cee----------------EccC------------------------
Confidence 000 0000
Q ss_pred CCCccceeecceeccCCCCCccccccCCCCCCCCCeEEEEEecCCcEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCe--
Q 001477 808 PSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAA-- 884 (1071)
Q Consensus 808 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~v~~s~d~~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i-- 884 (1071)
.. . ..+.+.+.|||||+++..+. .+.+.+.|.-+|..+.++..+...-
T Consensus 184 -------------------------~~---~-~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~ 234 (311)
T KOG1446|consen 184 -------------------------DN---D-EAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNL 234 (311)
T ss_pred -------------------------CC---C-ccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCc
Confidence 00 1 45678899999999988887 7889999999999999988766532
Q ss_pred -EEEEEcCCCCCEEEEEeCCCeEEEEEccCCeEEEEecC-cCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 001477 885 -TFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKG-HQNRITGLAFSPTLNALVSSGADAQLCMWSIDK 955 (1071)
Q Consensus 885 -~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~l~~-h~~~v~~l~~s~d~~~l~s~~~d~~v~vWd~~~ 955 (1071)
...+|+| |++++++|+.||+|.+|+++++..+..+.+ +.+++.++.|+|.-..++|+ +..+.+|-...
T Consensus 235 ~~~a~ftP-ds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa--~s~l~fw~p~~ 304 (311)
T KOG1446|consen 235 PLSATFTP-DSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSA--SSNLVFWLPDE 304 (311)
T ss_pred ceeEEECC-CCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeec--CceEEEEeccc
Confidence 6789999 999999999999999999999999999998 79999999999987777765 45688886654
No 89
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=4.9e-27 Score=218.14 Aligned_cols=256 Identities=11% Similarity=0.204 Sum_probs=211.3
Q ss_pred ccceeeEEeecCCCCeEEEEeecCCCeEEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeE
Q 001477 334 DLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNR 413 (1071)
Q Consensus 334 ~~~~~~~~~~~h~~~V~~~~fsp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~ 413 (1071)
...-...+.+.-.+.+..++||+.....+++++.||+++|||..... .+...++.|...|.+
T Consensus 48 ~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s------------------~Pi~~~kEH~~EV~S 109 (311)
T KOG0277|consen 48 PKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPS------------------KPIHKFKEHKREVYS 109 (311)
T ss_pred CCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCC------------------cchhHHHhhhhheEE
Confidence 34445666777789999999999988888889999999999954322 123347889999999
Q ss_pred EEECC-CCCEEEEEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccCCceeEE
Q 001477 414 CVWGP-DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT 492 (1071)
Q Consensus 414 ~~~sp-d~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 492 (1071)
+.|++ +++.++++|-|++|++|+...++.+. ++.+|...|...+|+|.... +++++|.|+++++||++..-....
T Consensus 110 vdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~---Tf~gh~~~Iy~a~~sp~~~n-lfas~Sgd~~l~lwdvr~~gk~~~ 185 (311)
T KOG0277|consen 110 VDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQ---TFNGHNSCIYQAAFSPHIPN-LFASASGDGTLRLWDVRSPGKFMS 185 (311)
T ss_pred eccccccceeEEeeccCCceEeecCCCCcceE---eecCCccEEEEEecCCCCCC-eEEEccCCceEEEEEecCCCceeE
Confidence 99999 56678888999999999998877666 88999999999999998776 899999999999999986444445
Q ss_pred ecCCCCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCce-eEEecCCCCcEEEEEEccCCC-EEEEeccCCCCCCeEE
Q 001477 493 FEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS-RVDYDAPGNWCTMMAYSADGT-RLFSCGTSKEGESHLV 570 (1071)
Q Consensus 493 ~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~-~~~~~~~~~~i~~~~~s~~~~-~l~~~~~~~d~~~~i~ 570 (1071)
+..|...+.++.|+... ..++++|+.|+.|+.||+++.+. +..+.+|+-.|+.+.|||... .|++++. |-+++
T Consensus 186 i~ah~~Eil~cdw~ky~-~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasY----DmT~r 260 (311)
T KOG0277|consen 186 IEAHNSEILCCDWSKYN-HNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASY----DMTVR 260 (311)
T ss_pred EEeccceeEeecccccC-CcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccc----cceEE
Confidence 88999999999998754 48999999999999999998654 557888999999999999654 5667765 88899
Q ss_pred EEeCCCCc-eeEEeecccccceeEEEEeCC-CCEEEEEeCCCcEEEEeC
Q 001477 571 EWNESEGA-IKRTYSGFRKRSLGVVQFDTT-RNRFLAAGDEFQIKFWDM 617 (1071)
Q Consensus 571 iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~ 617 (1071)
+||...+. .+.+...|.. .+..+.|++- +.++++.+-|+.++||+.
T Consensus 261 iw~~~~~ds~~e~~~~HtE-Fv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 261 IWDPERQDSAIETVDHHTE-FVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred ecccccchhhhhhhhccce-EEeccccccccCceeeecccccceeeecc
Confidence 99998554 4445555554 7888999874 578888999999999985
No 90
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=3.4e-26 Score=230.85 Aligned_cols=286 Identities=14% Similarity=0.224 Sum_probs=231.9
Q ss_pred cCCCCeEEEEeecCCCeEEEEEcCCCeEEEEecCCCcccccccceeecc----cccccchhhhhcccCCCCeeEEEECCC
Q 001477 344 NQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDI----SAASMPLQNALLNDAAISVNRCVWGPD 419 (1071)
Q Consensus 344 ~h~~~V~~~~fsp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~----~~~~~~~~~~~~~~h~~~v~~~~~spd 419 (1071)
.|.-+|+||+++||++ ..++++.+|+|.-|++.+|+.... +|.- +....+....- ++|...|.+++.|+|
T Consensus 140 ~H~~s~~~vals~d~~-~~fsask~g~i~kw~v~tgk~~~~----i~~~~ev~k~~~~~~k~~r-~~h~keil~~avS~D 213 (479)
T KOG0299|consen 140 KHQLSVTSVALSPDDK-RVFSASKDGTILKWDVLTGKKDRY----IIERDEVLKSHGNPLKESR-KGHVKEILTLAVSSD 213 (479)
T ss_pred cccCcceEEEeecccc-ceeecCCCcceeeeehhcCccccc----ccccchhhhhccCCCCccc-ccccceeEEEEEcCC
Confidence 4888999999999998 678999999999999999875521 1111 11111222211 489999999999999
Q ss_pred CCEEEEEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccCCceeEEecCCCCC
Q 001477 420 GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAP 499 (1071)
Q Consensus 420 ~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~ 499 (1071)
|+|||+|+.|..|.||+..+.+.+. .+.+|.+.|.+++|-.... -+++++.|++|++|+++....+.++.+|++.
T Consensus 214 gkylatgg~d~~v~Iw~~~t~ehv~---~~~ghr~~V~~L~fr~gt~--~lys~s~Drsvkvw~~~~~s~vetlyGHqd~ 288 (479)
T KOG0299|consen 214 GKYLATGGRDRHVQIWDCDTLEHVK---VFKGHRGAVSSLAFRKGTS--ELYSASADRSVKVWSIDQLSYVETLYGHQDG 288 (479)
T ss_pred CcEEEecCCCceEEEecCcccchhh---cccccccceeeeeeecCcc--ceeeeecCCceEEEehhHhHHHHHHhCCccc
Confidence 9999999999999999999988776 6889999999999977655 6899999999999999999999999999999
Q ss_pred eEEEEecccCCccEEEEEecCCeEEEEEcCCCceeEEecCCCCcEEEEEEccCCCEEEEeccCCCCCCeEEEEeCCCCce
Q 001477 500 VYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI 579 (1071)
Q Consensus 500 v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~ 579 (1071)
|.+|...... ..+-+|+.|+++++|++ ..+....+.++.+.+.|++|-.+ .++++|+. +|.|.+|++.+.++
T Consensus 289 v~~IdaL~re--R~vtVGgrDrT~rlwKi-~eesqlifrg~~~sidcv~~In~-~HfvsGSd----nG~IaLWs~~KKkp 360 (479)
T KOG0299|consen 289 VLGIDALSRE--RCVTVGGRDRTVRLWKI-PEESQLIFRGGEGSIDCVAFIND-EHFVSGSD----NGSIALWSLLKKKP 360 (479)
T ss_pred eeeechhccc--ceEEeccccceeEEEec-cccceeeeeCCCCCeeeEEEecc-cceeeccC----CceEEEeeecccCc
Confidence 9999876543 55666669999999999 45556677788889999999654 67778875 88899999999988
Q ss_pred eEEeecccc-----------cceeEEEEeCCCCEEEEEeCCCcEEEEeCCCC----ceeEEEecCCCCCCcceEEEcCCC
Q 001477 580 KRTYSGFRK-----------RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM----NMLTTVDADGGLPASPRLRFNKEG 644 (1071)
Q Consensus 580 ~~~~~~~~~-----------~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~~~v~~~~~s~~~ 644 (1071)
+.+....++ ..|++++..|..+++++|+.+|.|++|-+..+ +++..++.. ..|++++|+++|
T Consensus 361 lf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~---GfVNsl~f~~sg 437 (479)
T KOG0299|consen 361 LFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLV---GFVNSLAFSNSG 437 (479)
T ss_pred eeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccc---cEEEEEEEccCC
Confidence 877643221 16889999999999999999999999999887 344555433 478999999999
Q ss_pred CEEEEEe
Q 001477 645 SLLAVTT 651 (1071)
Q Consensus 645 ~~l~~~~ 651 (1071)
..+++|.
T Consensus 438 k~ivagi 444 (479)
T KOG0299|consen 438 KRIVAGI 444 (479)
T ss_pred CEEEEec
Confidence 9777664
No 91
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.5e-26 Score=244.71 Aligned_cols=261 Identities=17% Similarity=0.288 Sum_probs=225.6
Q ss_pred cccCCccceeeEEeec-CCCCeEEEEeecCCCeEEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhhhccc-
Q 001477 329 VYSQDDLTKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLND- 406 (1071)
Q Consensus 329 ~~~~d~~~~~~~~~~~-h~~~V~~~~fsp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~- 406 (1071)
+|.|+..++....... +.+.|+++.|+++|. +||+|..+|.|.|||..+.+.+.. +.+
T Consensus 199 vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~-~LavG~~~g~v~iwD~~~~k~~~~-------------------~~~~ 258 (484)
T KOG0305|consen 199 VYLWSASSGSVTELCSFGEELVTSVKWSPDGS-HLAVGTSDGTVQIWDVKEQKKTRT-------------------LRGS 258 (484)
T ss_pred EEEEecCCCceEEeEecCCCceEEEEECCCCC-EEEEeecCCeEEEEehhhcccccc-------------------ccCC
Confidence 4555555555544444 388999999999998 799999999999999988877654 455
Q ss_pred CCCCeeEEEECCCCCEEEEEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccC
Q 001477 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA 486 (1071)
Q Consensus 407 h~~~v~~~~~spd~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~ 486 (1071)
|...|.+++|+ +..+.+|+.|+.|..+|++..+.... .+.+|...|..+.|++|+. ++++|+.|+.+.|||...
T Consensus 259 h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~--~~~~H~qeVCgLkws~d~~--~lASGgnDN~~~Iwd~~~ 332 (484)
T KOG0305|consen 259 HASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVS--TLQGHRQEVCGLKWSPDGN--QLASGGNDNVVFIWDGLS 332 (484)
T ss_pred cCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhh--hhhcccceeeeeEECCCCC--eeccCCCccceEeccCCC
Confidence 99999999997 77899999999999999998776553 3789999999999999999 899999999999999988
Q ss_pred CceeEEecCCCCCeEEEEecccCCccEEEEEe--cCCeEEEEEcCCCceeEEecCCCCcEEEEEEccCCCEEEEeccCCC
Q 001477 487 GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA--IDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKE 564 (1071)
Q Consensus 487 ~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~--~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d 564 (1071)
..++..+..|.+.|.+++|+|... .+||+|+ .|++|++||..++..+..+. ....|.++.|++..+-++++.. .
T Consensus 333 ~~p~~~~~~H~aAVKA~awcP~q~-~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG--~ 408 (484)
T KOG0305|consen 333 PEPKFTFTEHTAAVKALAWCPWQS-GLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHG--Y 408 (484)
T ss_pred ccccEEEeccceeeeEeeeCCCcc-CceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecC--C
Confidence 899999999999999999999865 6888875 69999999999776665544 4678999999999987776643 3
Q ss_pred CCCeEEEEeCCCCceeEEeecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCC
Q 001477 565 GESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM 620 (1071)
Q Consensus 565 ~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 620 (1071)
.++.|.||+..+.+.+..+.+|.. .|..++++|||..+++|+.|.++++|++-..
T Consensus 409 s~n~i~lw~~ps~~~~~~l~gH~~-RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 409 SENQITLWKYPSMKLVAELLGHTS-RVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred CCCcEEEEeccccceeeeecCCcc-eeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 466799999999999999999998 7999999999999999999999999998764
No 92
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.9e-26 Score=250.01 Aligned_cols=272 Identities=17% Similarity=0.252 Sum_probs=211.6
Q ss_pred cCCCceEEEEEecccchhhhccccceeEEEecccccC---------------CCCC--------------ccce------
Q 001477 770 IAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTER---------------NPSG--------------KATA------ 814 (1071)
Q Consensus 770 ~~~~~v~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~---------------~~~g--------------~~~~------ 814 (1071)
.|.+.|.++.||+||++||++|.||.|+||.+...+. ...+ ....
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 4899999999999999999999999999999877210 0000 0000
Q ss_pred eecceeccCCCCCc---cccccCCCCCCCCCeEEEEEecCCcEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEc
Q 001477 815 NVAPQLWQPPSGTL---MTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFH 890 (1071)
Q Consensus 815 ~~~~~~~~~~~~~~---~~~~~~~~~h~~~~v~~v~~s~d~~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s 890 (1071)
... .+.+...... ....+.| | ...|..+.||.++ +|.+++ |.+|++|++...++++.|. |.+-|+|++|+
T Consensus 345 s~~-~~~p~~~f~f~ekP~~ef~G--H-t~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFn 418 (712)
T KOG0283|consen 345 SPC-VLLPLKAFVFSEKPFCEFKG--H-TADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFN 418 (712)
T ss_pred Ccc-ccCCCccccccccchhhhhc--c-chhheecccccCC-eeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEec
Confidence 000 0111111111 1112445 8 9999999999765 555666 9999999999999999998 99999999999
Q ss_pred CCCCCEEEEEeCCCeEEEEEccCCeEEEEecCcCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeecCCCCC
Q 001477 891 PQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGR 970 (1071)
Q Consensus 891 p~~~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~~~v~~l~~s~d~~~l~s~~~d~~v~vWd~~~~~~~~~~~~~~~~~~ 970 (1071)
|-|.+++++|+-||.|+||++...+.+.-..-+ .-|++++|+|||++.+.|+-+|.+++|+....+......+....+.
T Consensus 419 PvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~K 497 (712)
T KOG0283|consen 419 PVDDRYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKK 497 (712)
T ss_pred ccCCCcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCc
Confidence 999999999999999999999988866544444 6799999999999999999999999999999887776666665555
Q ss_pred CCCCCCceEEEEccCCC--EEEEEECCeEEEEeC-CCCceeecCCCCCCCCCeeEEEEecCCcEEEEEeCCCeEEEEEcC
Q 001477 971 QSPLVGETKVQFHNDQT--HLLVVHESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAE 1047 (1071)
Q Consensus 971 ~~~~~~v~~~~~s~dg~--~l~~~~d~~i~vwd~-~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~t~~~Dg~i~vwd~~ 1047 (1071)
......|+++.|.|... .|+++.|..|+|||. +...+..+...+. ...-....|+.||++|+++++|..|++|++.
T Consensus 498 k~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n-~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~ 576 (712)
T KOG0283|consen 498 KKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRN-TSSQISASFSSDGKHIVSASEDSWVYIWKND 576 (712)
T ss_pred cccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhccccc-CCcceeeeEccCCCEEEEeecCceEEEEeCC
Confidence 54446799999987554 888899999999999 6666666654432 2334577899999999999999999999984
Q ss_pred CC
Q 001477 1048 TL 1049 (1071)
Q Consensus 1048 ~~ 1049 (1071)
.-
T Consensus 577 ~~ 578 (712)
T KOG0283|consen 577 SF 578 (712)
T ss_pred CC
Confidence 43
No 93
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.95 E-value=5.3e-27 Score=233.02 Aligned_cols=247 Identities=19% Similarity=0.254 Sum_probs=209.5
Q ss_pred cccCCCCeeEEEECCCCCEEEEEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEE
Q 001477 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1071)
Q Consensus 404 ~~~h~~~v~~~~~spd~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd 483 (1071)
+..|.+.|..+.|-++...|++|+.|..|++|++..++ .....++.+..++|+++.|.++++ .+++.+.|+.+++|+
T Consensus 171 ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k-~~~~~tLaGs~g~it~~d~d~~~~--~~iAas~d~~~r~Wn 247 (459)
T KOG0288|consen 171 LDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEK-SELISTLAGSLGNITSIDFDSDNK--HVIAASNDKNLRLWN 247 (459)
T ss_pred hhccccccceeEEccCcchhhhcchhhhhhhhhcccch-hhhhhhhhccCCCcceeeecCCCc--eEEeecCCCceeeee
Confidence 56799999999999999999999999999999998876 223347778889999999999999 788999999999999
Q ss_pred ccCCceeEEecCCCCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCceeEEecCCCCcEEEEEEccCCCEEEEeccCC
Q 001477 484 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK 563 (1071)
Q Consensus 484 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~ 563 (1071)
+.+.+...++.||++.|+++.|.-.. ..+++|+.|.+|+.||+....+...+- ....+..++.+ +..++++..
T Consensus 248 vd~~r~~~TLsGHtdkVt~ak~~~~~--~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~--~~~~~SgH~-- 320 (459)
T KOG0288|consen 248 VDSLRLRHTLSGHTDKVTAAKFKLSH--SRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS--ISDVISGHF-- 320 (459)
T ss_pred ccchhhhhhhcccccceeeehhhccc--cceeeccccchhhhhhhhhhheecccc-ccccccceEec--ceeeeeccc--
Confidence 99999999999999999999987654 449999999999999999866554332 23344444444 445556654
Q ss_pred CCCCeEEEEeCCCCceeEEeecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCC--CCCcceEEEc
Q 001477 564 EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGG--LPASPRLRFN 641 (1071)
Q Consensus 564 d~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~~~~s 641 (1071)
|..|+.||.+++.+......+. .|+++..++++..+++.+.|.++.+.|+++.+....+...+. ....+.+.||
T Consensus 321 --DkkvRfwD~Rs~~~~~sv~~gg--~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfS 396 (459)
T KOG0288|consen 321 --DKKVRFWDIRSADKTRSVPLGG--RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFS 396 (459)
T ss_pred --ccceEEEeccCCceeeEeecCc--ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEEC
Confidence 6779999999999999888765 799999999999999999999999999999998888765432 2347899999
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCh
Q 001477 642 KEGSLLAVTTSDNGIKILANSDG 664 (1071)
Q Consensus 642 ~~~~~l~~~~~dg~v~iw~~~~~ 664 (1071)
|++.++++|+.||.|+||++.++
T Consensus 397 pd~~YvaAGS~dgsv~iW~v~tg 419 (459)
T KOG0288|consen 397 PDGSYVAAGSADGSVYIWSVFTG 419 (459)
T ss_pred CCCceeeeccCCCcEEEEEccCc
Confidence 99999999999999999999887
No 94
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.95 E-value=4.1e-26 Score=232.48 Aligned_cols=302 Identities=17% Similarity=0.227 Sum_probs=233.1
Q ss_pred ceeeEEeec-CCCCeEEEEeecCCCeEEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeEE
Q 001477 336 TKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRC 414 (1071)
Q Consensus 336 ~~~~~~~~~-h~~~V~~~~fsp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~ 414 (1071)
+..+...+. |...|+++++.|.|.+ +++|+.|-.|++||++....... .|+. +.......|.++
T Consensus 156 P~shEi~l~hgtk~Vsal~~Dp~GaR-~~sGs~Dy~v~~wDf~gMdas~~-~fr~-------------l~P~E~h~i~sl 220 (641)
T KOG0772|consen 156 PGSHEIQLKHGTKIVSALAVDPSGAR-FVSGSLDYTVKFWDFQGMDASMR-SFRQ-------------LQPCETHQINSL 220 (641)
T ss_pred CccceEeccCCceEEEEeeecCCCce-eeeccccceEEEEecccccccch-hhhc-------------cCccccccccee
Confidence 344445556 6778999999999985 78999999999999986543221 1221 123355679999
Q ss_pred EECCCCCEEEEEeCCCeEEEEEecCCCc---------cceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEcc
Q 001477 415 VWGPDGLMLGVAFSKHIVHLYTYNPTGE---------LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV 485 (1071)
Q Consensus 415 ~~spd~~~la~~~~dg~i~iwd~~~~~~---------~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~ 485 (1071)
+||+.|..|++.+....++|+|-.+... +.....-.||...++|.+|+|+.+. .++|++.||++++||+.
T Consensus 221 ~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~-~FlT~s~DgtlRiWdv~ 299 (641)
T KOG0772|consen 221 QYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKE-EFLTCSYDGTLRIWDVN 299 (641)
T ss_pred eecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCccc-ceEEecCCCcEEEEecC
Confidence 9999999999988888999999765332 2222334589999999999999988 79999999999999998
Q ss_pred CCce-eEEec-----CCCCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCcee---EEecCCCC--cEEEEEEccCCC
Q 001477 486 AGRK-QYTFE-----GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR---VDYDAPGN--WCTMMAYSADGT 554 (1071)
Q Consensus 486 ~~~~-~~~~~-----~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~---~~~~~~~~--~i~~~~~s~~~~ 554 (1071)
..+. +..+. +..-++++++|++++ ..+++|+.||.|.+|+....... ..-..|.. .|+|+.||+||+
T Consensus 300 ~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg--~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~ 377 (641)
T KOG0772|consen 300 NTKSQLQVIKTKPAGGKRVPVTSCAWNRDG--KLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGN 377 (641)
T ss_pred CchhheeEEeeccCCCcccCceeeecCCCc--chhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccc
Confidence 6543 23332 345678888998755 88999999999999997654332 23345555 999999999999
Q ss_pred EEEEeccCCCCCCeEEEEeCCCC-ceeEEeecccc-cceeEEEEeCCCCEEEEEe------CCCcEEEEeCCCCceeEEE
Q 001477 555 RLFSCGTSKEGESHLVEWNESEG-AIKRTYSGFRK-RSLGVVQFDTTRNRFLAAG------DEFQIKFWDMDNMNMLTTV 626 (1071)
Q Consensus 555 ~l~~~~~~~d~~~~i~iwd~~~~-~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~ 626 (1071)
+|++-+. |..+++||++.. +++....+... ..-+.++|||+.+.|++|. ..|++.+||..+.+.+..+
T Consensus 378 ~LlSRg~----D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki 453 (641)
T KOG0772|consen 378 YLLSRGF----DDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKI 453 (641)
T ss_pred hhhhccC----CCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEe
Confidence 9998874 888999999864 45554444322 1345689999999999975 4578999999999999988
Q ss_pred ecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEc
Q 001477 627 DADGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (1071)
Q Consensus 627 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~ 661 (1071)
.... ..|..+.|+|.-+.|++|+.||++++|--
T Consensus 454 ~i~~--aSvv~~~WhpkLNQi~~gsgdG~~~vyYd 486 (641)
T KOG0772|consen 454 DIST--ASVVRCLWHPKLNQIFAGSGDGTAHVYYD 486 (641)
T ss_pred cCCC--ceEEEEeecchhhheeeecCCCceEEEEC
Confidence 7663 47899999999999999999999998753
No 95
>PTZ00420 coronin; Provisional
Probab=99.95 E-value=6.4e-25 Score=245.42 Aligned_cols=256 Identities=13% Similarity=0.136 Sum_probs=196.2
Q ss_pred EcCCCeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeEEEECCC-CCEEEEEeCCCeEEEEEecCCCc-
Q 001477 365 GTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD-GLMLGVAFSKHIVHLYTYNPTGE- 442 (1071)
Q Consensus 365 gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd-~~~la~~~~dg~i~iwd~~~~~~- 442 (1071)
|+.++.|.+|+......+. .+.+|.+.|.+++|+|+ +.+||+|+.|++|+|||+.++..
T Consensus 50 GG~~gvI~L~~~~r~~~v~-------------------~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~ 110 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVI-------------------KLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDES 110 (568)
T ss_pred CCceeEEEeeecCCCceEE-------------------EEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcc
Confidence 4556778888765543222 26789999999999996 78999999999999999986432
Q ss_pred c----ceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccCCceeEEecCCCCCeEEEEecccCCccEEEEEe
Q 001477 443 L----RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA 518 (1071)
Q Consensus 443 ~----~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~ 518 (1071)
. .....+.+|...|.+++|+|++.. ++++++.|++|++||+++++.+..+. |...|.+++|++++ .+|++++
T Consensus 111 ~~~i~~p~~~L~gH~~~V~sVaf~P~g~~-iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG--~lLat~s 186 (568)
T PTZ00420 111 VKEIKDPQCILKGHKKKISIIDWNPMNYY-IMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKG--NLLSGTC 186 (568)
T ss_pred ccccccceEEeecCCCcEEEEEECCCCCe-EEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCC--CEEEEEe
Confidence 1 122357789999999999999874 56899999999999999999887775 66789999999865 8999999
Q ss_pred cCCeEEEEEcCCCceeEEecCCCCcEEE-----EEEccCCCEEEEeccCCCCCCeEEEEeCCC-CceeEEeeccccc-ce
Q 001477 519 IDGKIKAWLYDYLGSRVDYDAPGNWCTM-----MAYSADGTRLFSCGTSKEGESHLVEWNESE-GAIKRTYSGFRKR-SL 591 (1071)
Q Consensus 519 ~d~~i~vwd~~~~~~~~~~~~~~~~i~~-----~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~-~~~~~~~~~~~~~-~v 591 (1071)
.|+.|++||++++.....+..|.+.+.+ ..|++++.++++++.++..+++|++||++. ++++..+..+... .+
T Consensus 187 ~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L 266 (568)
T PTZ00420 187 VGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPL 266 (568)
T ss_pred cCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccce
Confidence 9999999999999888888888765432 345689999999886554456899999995 5666655443321 22
Q ss_pred eEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCC
Q 001477 592 GVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEG 644 (1071)
Q Consensus 592 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 644 (1071)
......+++.++++|+.|++|++|++..+. +..+.......++.+++|.|+.
T Consensus 267 ~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~-~~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 267 IPHYDESTGLIYLIGKGDGNCRYYQHSLGS-IRKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred EEeeeCCCCCEEEEEECCCeEEEEEccCCc-EEeecccccCCCccceEEcccc
Confidence 223334558888899999999999998764 3444433344577889999964
No 96
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.95 E-value=1.3e-25 Score=228.85 Aligned_cols=297 Identities=16% Similarity=0.276 Sum_probs=223.5
Q ss_pred EEecCCCCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCceeE-----EecCCCCcEEEEEEccCCCEEEEeccCCCC
Q 001477 491 YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV-----DYDAPGNWCTMMAYSADGTRLFSCGTSKEG 565 (1071)
Q Consensus 491 ~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~-----~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~ 565 (1071)
-.+.+|+..|.++++.|.+ ..|++|+.|..|++||+....... ......+.|+++.|++.|..|++.+.
T Consensus 161 i~l~hgtk~Vsal~~Dp~G--aR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg---- 234 (641)
T KOG0772|consen 161 IQLKHGTKIVSALAVDPSG--ARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSG---- 234 (641)
T ss_pred EeccCCceEEEEeeecCCC--ceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEec----
Confidence 4577889999999998765 899999999999999987543322 23456779999999999999887763
Q ss_pred CCeEEEEeCCCCceeEEe------------ecccccceeEEEEeCCC-CEEEEEeCCCcEEEEeCCCCc-eeEEE---ec
Q 001477 566 ESHLVEWNESEGAIKRTY------------SGFRKRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDNMN-MLTTV---DA 628 (1071)
Q Consensus 566 ~~~i~iwd~~~~~~~~~~------------~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~-~~~~~---~~ 628 (1071)
..+.+++|-...+..... ++|.. .+++.+|+|.. +.+++++.||++++||+...+ .+..+ ..
T Consensus 235 ~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia-~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~ 313 (641)
T KOG0772|consen 235 SAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIA-ELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPA 313 (641)
T ss_pred CcceeEEccCCceeeeeeccchhhhhhhccCCcee-eeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccC
Confidence 677899996544333322 35555 78999999986 568899999999999998643 22222 22
Q ss_pred CCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCChhhhhhhhcCCccccccCCCCCCCCCCccccccCCCCccccccCC
Q 001477 629 DGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAP 708 (1071)
Q Consensus 629 ~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 708 (1071)
.+...+++.++|++||.+||+|..||.|.+|+..... .+ ..
T Consensus 314 ~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~--v~-----p~-------------------------------- 354 (641)
T KOG0772|consen 314 GGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRT--VR-----PV-------------------------------- 354 (641)
T ss_pred CCcccCceeeecCCCcchhhhcccCCceeeeecCCcc--cc-----cc--------------------------------
Confidence 3444578999999999999999999999999974320 00 00
Q ss_pred CCCCCCCCCCcccccccCCCCcccccccccccccccCccceeccCCCCCcccceeeecCCCcCCCceEEEEEecccchhh
Q 001477 709 TLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLL 788 (1071)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~ 788 (1071)
+++ + ..+.....|+++.||+||++|+
T Consensus 355 --------------------------------------~~v------------k----~AH~~g~~Itsi~FS~dg~~Ll 380 (641)
T KOG0772|consen 355 --------------------------------------MKV------------K----DAHLPGQDITSISFSYDGNYLL 380 (641)
T ss_pred --------------------------------------eEe------------e----eccCCCCceeEEEeccccchhh
Confidence 000 0 0001234899999999999999
Q ss_pred hccccceeEEEecccccCCCCCccceeecceeccCCCCCccccccCCCCCCCCCeEEEEEecCCcEEEEEe-------CC
Q 001477 789 ALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-------GG 861 (1071)
Q Consensus 789 ~~~~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~v~~s~d~~~la~~~-------dg 861 (1071)
+-+.|+++++||+..... .......+. . ..+-+.++||||.++|++|. .|
T Consensus 381 SRg~D~tLKvWDLrq~kk-------------------pL~~~tgL~---t-~~~~tdc~FSPd~kli~TGtS~~~~~~~g 437 (641)
T KOG0772|consen 381 SRGFDDTLKVWDLRQFKK-------------------PLNVRTGLP---T-PFPGTDCCFSPDDKLILTGTSAPNGMTAG 437 (641)
T ss_pred hccCCCceeeeecccccc-------------------chhhhcCCC---c-cCCCCccccCCCceEEEecccccCCCCCc
Confidence 999999999999864211 001111111 1 45667899999999999995 26
Q ss_pred eEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEc
Q 001477 862 KVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNV 911 (1071)
Q Consensus 862 ~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~ 911 (1071)
.+.+||..+...+..+.-.+..|..+.|+| .-+.|.+|+.||.++||=-
T Consensus 438 ~L~f~d~~t~d~v~ki~i~~aSvv~~~Whp-kLNQi~~gsgdG~~~vyYd 486 (641)
T KOG0772|consen 438 TLFFFDRMTLDTVYKIDISTASVVRCLWHP-KLNQIFAGSGDGTAHVYYD 486 (641)
T ss_pred eEEEEeccceeeEEEecCCCceEEEEeecc-hhhheeeecCCCceEEEEC
Confidence 799999999999999988888999999999 7788888999999998843
No 97
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=3e-25 Score=212.71 Aligned_cols=253 Identities=19% Similarity=0.246 Sum_probs=187.4
Q ss_pred ceEEEEEecccchhhh-ccccceeEEEecccccCCCCCccceeecceeccCCCCCccccccCCCCCCCCCeEEEEEecCC
Q 001477 774 KVVRLIYTNSGLSLLA-LASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKND 852 (1071)
Q Consensus 774 ~v~~l~~s~~g~~l~~-~~~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~v~~s~d~ 852 (1071)
..+.++|+||.+.+++ ......+++|.+....- |...-.+ .-||- -. +. ..| .-.+..+-....+
T Consensus 134 hpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~d---G~~~~~~--v~~D~--~~-----f~-~kh-~v~~i~iGiA~~~ 199 (420)
T KOG2096|consen 134 HPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTD---GSGSHHF--VHIDN--LE-----FE-RKH-QVDIINIGIAGNA 199 (420)
T ss_pred CceEEEECCCcceEEEEEccCCEEEEEEeeeccc---CCCCccc--ccccc--cc-----cc-hhc-ccceEEEeecCCc
Confidence 4578899999887654 44567899997654321 2221110 01110 00 11 125 6677788888899
Q ss_pred cEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcc---CC-----eEEEEecCc
Q 001477 853 SYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVR---VD-----EVKTKLKGH 923 (1071)
Q Consensus 853 ~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~---~~-----~~~~~l~~h 923 (1071)
++|++++ |..|.+|+++ |+.+..+......-+..+.|| +|++||+++---.|+||.+- +| ..+-.|+||
T Consensus 200 k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP-~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH 277 (420)
T KOG2096|consen 200 KYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSP-DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGH 277 (420)
T ss_pred eEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCC-CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccc
Confidence 9999999 8999999998 889888887777788899999 99999999999999999864 23 235568999
Q ss_pred CCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeee--eeecCCCCCC-CCCCCceEEEEccCCCEEEEEECCeEEEE
Q 001477 924 QNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKS--RFIQAPAGRQ-SPLVGETKVQFHNDQTHLLVVHESQISVY 1000 (1071)
Q Consensus 924 ~~~v~~l~~s~d~~~l~s~~~d~~v~vWd~~~~~~~~~--~~~~~~~~~~-~~~~~v~~~~~s~dg~~l~~~~d~~i~vw 1000 (1071)
...|..++||++...++|++.||++++||++-.-.... ..+.....+. ........++.+|.|+.||++....+++|
T Consensus 278 ~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~ 357 (420)
T KOG2096|consen 278 QSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVF 357 (420)
T ss_pred hhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEE
Confidence 99999999999999999999999999999864221111 1122211110 01134458999999999999999999999
Q ss_pred eC-CCCceeecCCCCCCCCCeeEEEEecCCcEEEEEeCCCeEEEEE
Q 001477 1001 DS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFD 1045 (1071)
Q Consensus 1001 d~-~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~t~~~Dg~i~vwd 1045 (1071)
.. +++....+. ..|...|++++|++||+++++++ |..+++..
T Consensus 358 ~se~g~~~~~~e--~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 358 ASEDGKDYPELE--DIHSTTISSISYSSDGKYIATCG-DRYVRVIR 400 (420)
T ss_pred EcccCccchhHH--HhhcCceeeEEecCCCcEEeeec-ceeeeeec
Confidence 98 666555544 45699999999999999999987 88888876
No 98
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=3.2e-25 Score=247.56 Aligned_cols=250 Identities=16% Similarity=0.192 Sum_probs=202.9
Q ss_pred CCCCeeEEEECCCCCEEEEEeCCCeEEEEEecCCCcc----------ceeeEeecccCCEEEEEEec-CCCceEEEEEeC
Q 001477 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGEL----------RQHLEIDAHVGGVNDIAFAH-PNKQLCIVTCGD 475 (1071)
Q Consensus 407 h~~~v~~~~~spd~~~la~~~~dg~i~iwd~~~~~~~----------~~~~~~~~h~~~v~~~~~s~-d~~~~~l~s~~~ 475 (1071)
+-..|.....++|+..+++++.+..+..|+..++..+ .....+.+|.+.|++++|+| ++. +|++|+.
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~--~LaSgS~ 96 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQ--KLFTASE 96 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCC--EEEEEeC
Confidence 4445666777778777788877777778876554322 11224779999999999999 777 8999999
Q ss_pred CCcEEEEEccCC-------ceeEEecCCCCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCceeEEecCCCCcEEEEE
Q 001477 476 DKMIKVWDVVAG-------RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMA 548 (1071)
Q Consensus 476 d~~i~iwd~~~~-------~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~ 548 (1071)
|++|++||+.++ +++..+.+|...|.+++|+|..+ ++|++++.|++|++||++++.....+..|...|.+++
T Consensus 97 DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~-~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla 175 (493)
T PTZ00421 97 DGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAM-NVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLE 175 (493)
T ss_pred CCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCC-CEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEE
Confidence 999999999765 35678899999999999998643 6999999999999999999888888888999999999
Q ss_pred EccCCCEEEEeccCCCCCCeEEEEeCCCCceeEEeecccccceeEEEEeCCCCEEEEEe----CCCcEEEEeCCCCc-ee
Q 001477 549 YSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG----DEFQIKFWDMDNMN-ML 623 (1071)
Q Consensus 549 ~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~-~~ 623 (1071)
|+|+|.+|++++. |+.|++||+++++.+..+.+|.......+.|.+++..+++++ .|+.|++||+++.. ++
T Consensus 176 ~spdG~lLatgs~----Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~ 251 (493)
T PTZ00421 176 WNLDGSLLCTTSK----DKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPY 251 (493)
T ss_pred EECCCCEEEEecC----CCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCce
Confidence 9999999999975 888999999999999999888764556778999988888754 47999999998754 33
Q ss_pred EEEecCCCCCCcceEEEcCCCCEEEEEe-CCCcEEEEEcCCh
Q 001477 624 TTVDADGGLPASPRLRFNKEGSLLAVTT-SDNGIKILANSDG 664 (1071)
Q Consensus 624 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~v~iw~~~~~ 664 (1071)
.....+. ...+....|++++++|++++ .|+.|++||+.++
T Consensus 252 ~~~~~d~-~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~ 292 (493)
T PTZ00421 252 STVDLDQ-SSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNE 292 (493)
T ss_pred eEeccCC-CCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCC
Confidence 3333322 23456677899999999887 5999999999877
No 99
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=3.5e-26 Score=218.48 Aligned_cols=331 Identities=12% Similarity=0.202 Sum_probs=250.0
Q ss_pred ceeEEeecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCcEE
Q 001477 578 AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIK 657 (1071)
Q Consensus 578 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~ 657 (1071)
+.++.+.+|.+ .|..++.......+.+++.|.+.+||.++++.++..+.+|.+ .|+++.|++.+.++++++.|++.+
T Consensus 139 ~lvre~~GHkD-GiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~G--SVNsikfh~s~~L~lTaSGD~taH 215 (481)
T KOG0300|consen 139 RLVRELEGHKD-GIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTG--SVNSIKFHNSGLLLLTASGDETAH 215 (481)
T ss_pred eehhhhccccc-ceeeehhhcCCcceeecccccceeEEeeccccceeeeccccc--ceeeEEeccccceEEEccCCcchH
Confidence 34566788887 788888877777888899999999999999999999987755 899999999999999999999999
Q ss_pred EEEcCChhhhhhh--hcCCccccccCCCCCCCCCCccccccCCCCccccccCCCCCCCCCCCCcccccccCCCCcccccc
Q 001477 658 ILANSDGVRLLRM--LEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVD 735 (1071)
Q Consensus 658 iw~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 735 (1071)
||...-.....+. -.+|+.
T Consensus 216 IW~~av~~~vP~~~a~~~hSs----------------------------------------------------------- 236 (481)
T KOG0300|consen 216 IWKAAVNWEVPSNNAPSDHSS----------------------------------------------------------- 236 (481)
T ss_pred HHHHhhcCcCCCCCCCCCCCc-----------------------------------------------------------
Confidence 9974322000000 000000
Q ss_pred cccccccccCccceeccCCCCCcccceeeecCCCcCCCceEEEEEecccchhhhccccceeEEEecccccCCCCCcccee
Q 001477 736 VKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATAN 815 (1071)
Q Consensus 736 ~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~ 815 (1071)
.+ .+.--|- + .+-..-....|| .+|++
T Consensus 237 -------Ee-E~e~sDe------------------~-~~d~d~~~~sD~---------~tiRv----------------- 263 (481)
T KOG0300|consen 237 -------EE-EEEHSDE------------------H-NRDTDSSEKSDG---------HTIRV----------------- 263 (481)
T ss_pred -------hh-hhhcccc------------------c-ccccccccccCC---------ceeee-----------------
Confidence 00 0000000 0 000000000011 12222
Q ss_pred ecceeccCCCCCccccccCCCCCCCCCeEEEEEecCCcEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCC
Q 001477 816 VAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDN 894 (1071)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~v~~s~d~~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~ 894 (1071)
....+.+ | ...|.+..|-..|+.+++++ |.+..+||+++++++..+.+|..+.+.++-+| ..
T Consensus 264 -------------Pl~~ltg--H-~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHp-tQ 326 (481)
T KOG0300|consen 264 -------------PLMRLTG--H-RAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHP-TQ 326 (481)
T ss_pred -------------eeeeeec--c-ccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCC-cc
Confidence 1112445 8 89999999999999999999 99999999999999999999999999999999 89
Q ss_pred CEEEEEeCCCeEEEEEccCC-eEEEEecCcCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeecCCCCCCCC
Q 001477 895 NIIAIGMEDSSVQIYNVRVD-EVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSP 973 (1071)
Q Consensus 895 ~~la~g~~dg~v~vwd~~~~-~~~~~l~~h~~~v~~l~~s~d~~~l~s~~~d~~v~vWd~~~~~~~~~~~~~~~~~~~~~ 973 (1071)
+++++.+.|.+.++||.... ..+..|+||.+.|+++.|..|. .+++++.|.+|++||+.+....-. ....
T Consensus 327 rLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsplA--------TIRt 397 (481)
T KOG0300|consen 327 RLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPLA--------TIRT 397 (481)
T ss_pred eEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC-ceeecCCCceEEEeeeccccCcce--------eeec
Confidence 99999999999999999854 4578899999999999998665 588999999999999998442211 1111
Q ss_pred CCCceEEEEccCCCEEEEE-ECCeEEEEeCCCCceeecC--CCCCCCCCeeEEEEecCCc--EEEEEeCCCeEEEEEcCC
Q 001477 974 LVGETKVQFHNDQTHLLVV-HESQISVYDSKLECSRSWS--PKDALPAPISSAIYSCDGL--LVYAGFCDGAIGVFDAET 1048 (1071)
Q Consensus 974 ~~~v~~~~~s~dg~~l~~~-~d~~i~vwd~~~~~~~~~~--~~~~h~~~v~~~~~s~dg~--~l~t~~~Dg~i~vwd~~~ 1048 (1071)
..++..++.+..+..+|.- ++..|++||+++..+..+. ...+|..-|+|.+|+.+.- -|++++.|..+.-|.+..
T Consensus 398 dS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~ 477 (481)
T KOG0300|consen 398 DSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINT 477 (481)
T ss_pred CCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEecc
Confidence 2568899999999999996 4569999999999887765 4568999999999987643 478899999999999875
Q ss_pred C
Q 001477 1049 L 1049 (1071)
Q Consensus 1049 ~ 1049 (1071)
-
T Consensus 478 p 478 (481)
T KOG0300|consen 478 P 478 (481)
T ss_pred c
Confidence 3
No 100
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=5.3e-22 Score=217.46 Aligned_cols=276 Identities=15% Similarity=0.208 Sum_probs=225.0
Q ss_pred CCCCeEEEEeecCCCeEEEEEcCCCeEEEEecCCC-cccccccceeecccccccchhhhhcccCCCCeeEEEECCCCCEE
Q 001477 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSR-ERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLML 423 (1071)
Q Consensus 345 h~~~V~~~~fsp~g~~lla~gs~dg~i~iwd~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~l 423 (1071)
|..+-+.++|.|+|+ +|.+++.||.|++|+.... +.... +.-++..|.+++. ++.++
T Consensus 12 ht~G~t~i~~d~~ge-fi~tcgsdg~ir~~~~~sd~e~P~t-------------------i~~~g~~v~~ia~--~s~~f 69 (933)
T KOG1274|consen 12 HTGGLTLICYDPDGE-FICTCGSDGDIRKWKTNSDEEEPET-------------------IDISGELVSSIAC--YSNHF 69 (933)
T ss_pred ccCceEEEEEcCCCC-EEEEecCCCceEEeecCCcccCCch-------------------hhccCceeEEEee--cccce
Confidence 777899999999998 7888889999999998765 22211 2226777887777 55699
Q ss_pred EEEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccCCceeEEecCCCCCeEEE
Q 001477 424 GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSV 503 (1071)
Q Consensus 424 a~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i 503 (1071)
++|+.+++|.+|...+++.-. .+....-++++++|+.+|+ +++.||.|-.|++-+..+......+++|.++|.++
T Consensus 70 ~~~s~~~tv~~y~fps~~~~~---iL~Rftlp~r~~~v~g~g~--~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l 144 (933)
T KOG1274|consen 70 LTGSEQNTVLRYKFPSGEEDT---ILARFTLPIRDLAVSGSGK--MIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQL 144 (933)
T ss_pred EEeeccceEEEeeCCCCCccc---eeeeeeccceEEEEecCCc--EEEeecCceeEEEEeccccchheeecccCCceeee
Confidence 999999999999999876543 3334566899999999999 89999999999999999999999999999999999
Q ss_pred EecccCCccEEEEEecCCeEEEEEcCCCceeEEecCC--------CCcEEEEEEccCCCEEEEeccCCCCCCeEEEEeCC
Q 001477 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP--------GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES 575 (1071)
Q Consensus 504 ~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~--------~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~ 575 (1071)
.++|.+ ++|++.+.||.|++||+.++.....+..- ...+..++|+|+|..++..+. ++.|.+|+..
T Consensus 145 ~~~p~~--~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~----d~~Vkvy~r~ 218 (933)
T KOG1274|consen 145 SYDPKG--NFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPV----DNTVKVYSRK 218 (933)
T ss_pred eEcCCC--CEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeecc----CCeEEEEccC
Confidence 999866 89999999999999999987765544321 346778999999766666554 7779999999
Q ss_pred CCceeEEeeccccc-ceeEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCC
Q 001477 576 EGAIKRTYSGFRKR-SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDN 654 (1071)
Q Consensus 576 ~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 654 (1071)
++.....+...... .+..++|+|.|.||++++.||.|.|||+++.+. |.....|.+++|.|+.+.+-.-...|
T Consensus 219 ~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~------~~~~~~Vc~~aw~p~~n~it~~~~~g 292 (933)
T KOG1274|consen 219 GWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER------HEFKRAVCCEAWKPNANAITLITALG 292 (933)
T ss_pred CceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh------ccccceeEEEecCCCCCeeEEEeecc
Confidence 99988887764332 388999999999999999999999999998222 33445799999999988776666666
Q ss_pred cEEEE
Q 001477 655 GIKIL 659 (1071)
Q Consensus 655 ~v~iw 659 (1071)
...+|
T Consensus 293 ~~~~~ 297 (933)
T KOG1274|consen 293 TLGVS 297 (933)
T ss_pred ccccC
Confidence 65555
No 101
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.94 E-value=4e-25 Score=220.90 Aligned_cols=282 Identities=15% Similarity=0.217 Sum_probs=244.1
Q ss_pred CCeEEEEeecCCCeEEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeEEEECCCCCEEEEE
Q 001477 347 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA 426 (1071)
Q Consensus 347 ~~V~~~~fsp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~la~~ 426 (1071)
..++++...|... .+.+|+.|..+.++|...++.+.. +.||...|+.+.|+|+...++++
T Consensus 220 pgi~ald~~~s~~-~ilTGG~d~~av~~d~~s~q~l~~-------------------~~Gh~kki~~v~~~~~~~~v~~a 279 (506)
T KOG0289|consen 220 PGITALDIIPSSS-KILTGGEDKTAVLFDKPSNQILAT-------------------LKGHTKKITSVKFHKDLDTVITA 279 (506)
T ss_pred CCeeEEeecCCCC-cceecCCCCceEEEecchhhhhhh-------------------ccCcceEEEEEEeccchhheeec
Confidence 3788999999854 688999999999999998877653 88999999999999999999999
Q ss_pred eCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccCCceeEEecC--CCCCeEEEE
Q 001477 427 FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG--HEAPVYSVC 504 (1071)
Q Consensus 427 ~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~--h~~~v~~i~ 504 (1071)
+.|..|+||......... ....|.++|+.+..+|.|+ +|++++.|++..+.|+++|..+..... ..-.+++.+
T Consensus 280 Sad~~i~vws~~~~s~~~---~~~~h~~~V~~ls~h~tge--YllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~ 354 (506)
T KOG0289|consen 280 SADEIIRVWSVPLSSEPT---SSRPHEEPVTGLSLHPTGE--YLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAA 354 (506)
T ss_pred CCcceEEeeccccccCcc---ccccccccceeeeeccCCc--EEEEecCCceEEEEEccCCcEEEEEeeccccceeEEee
Confidence 999999999998766444 5678999999999999999 899999999999999999998876553 234589999
Q ss_pred ecccCCccEEEEEecCCeEEEEEcCCCceeEEecCCCCcEEEEEEccCCCEEEEeccCCCCCCeEEEEeCCCCceeEEee
Q 001477 505 PHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS 584 (1071)
Q Consensus 505 ~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~ 584 (1071)
|+|++ .++.+|..|+.+++||+.++.....+.+|.++|..++|+.+|-+|++++. |+.|++||++.-+..+++.
T Consensus 355 fHpDg--Lifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~ad----d~~V~lwDLRKl~n~kt~~ 428 (506)
T KOG0289|consen 355 FHPDG--LIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAAD----DGSVKLWDLRKLKNFKTIQ 428 (506)
T ss_pred EcCCc--eEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEec----CCeEEEEEehhhcccceee
Confidence 99865 89999999999999999999999999999999999999999999999985 6779999999988888888
Q ss_pred cccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCCc--eeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEc
Q 001477 585 GFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN--MLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (1071)
Q Consensus 585 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~ 661 (1071)
......+.++.|.+.|.+++.+|.|=+|++++-.+.. .+..+..+ .+..+++.|....+++++++.|..++++.+
T Consensus 429 l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~--sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 429 LDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADH--SGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhc--ccccceeeecccceEEeeccchhheEEeec
Confidence 7766679999999999999999888777777754433 44444433 346789999999999999999999988754
No 102
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.94 E-value=2.7e-25 Score=235.22 Aligned_cols=283 Identities=15% Similarity=0.297 Sum_probs=238.7
Q ss_pred eeeEEeec-CCCCeEEEEeecCCCeEEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeE-E
Q 001477 337 KTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNR-C 414 (1071)
Q Consensus 337 ~~~~~~~~-h~~~V~~~~fsp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~-~ 414 (1071)
++..+.+. |+..|..+++.+.. .++++|.||++++|+-..++.+.. +.+.+|.+-|.+ +
T Consensus 4 Y~ls~~l~gH~~DVr~v~~~~~~--~i~s~sRd~t~~vw~~~~~~~l~~-----------------~~~~~~~g~i~~~i 64 (745)
T KOG0301|consen 4 YKLSHELEGHKSDVRAVAVTDGV--CIISGSRDGTVKVWAKKGKQYLET-----------------HAFEGPKGFIANSI 64 (745)
T ss_pred ceeEEEeccCccchheeEecCCe--EEeecCCCCceeeeeccCcccccc-----------------eecccCcceeeccc
Confidence 34556666 89999999988876 478899999999999876654432 225678888887 8
Q ss_pred EECC-CCCEEEEEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccCCceeEEe
Q 001477 415 VWGP-DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF 493 (1071)
Q Consensus 415 ~~sp-d~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 493 (1071)
++-+ ++-.|++|+.|+.|.+|...+...+. .+.+|...|.|++...++. +++||.|.++++|- .+++...+
T Consensus 65 ~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~---~LkgH~snVC~ls~~~~~~---~iSgSWD~TakvW~--~~~l~~~l 136 (745)
T KOG0301|consen 65 CYAESDKGRLVVGGMDTTIIVFKLSQAEPLY---TLKGHKSNVCSLSIGEDGT---LISGSWDSTAKVWR--IGELVYSL 136 (745)
T ss_pred eeccccCcceEeecccceEEEEecCCCCchh---hhhccccceeeeecCCcCc---eEecccccceEEec--chhhhccc
Confidence 8886 55579999999999999999988766 8899999999999877765 89999999999995 56777889
Q ss_pred cCCCCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCceeEEecCCCCcEEEEEEccCCCEEEEeccCCCCCCeEEEEe
Q 001477 494 EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWN 573 (1071)
Q Consensus 494 ~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd 573 (1071)
.+|+..|++++..|. +.+++||.|.+|++|.- +.....+.+|...|+.+++-+++. +++|+ +|+.|+.|+
T Consensus 137 ~gH~asVWAv~~l~e---~~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~-flScs----NDg~Ir~w~ 206 (745)
T KOG0301|consen 137 QGHTASVWAVASLPE---NTYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSH-FLSCS----NDGSIRLWD 206 (745)
T ss_pred CCcchheeeeeecCC---CcEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCC-eEeec----CCceEEEEe
Confidence 999999999998875 48999999999999954 667778899999999999988755 45555 489999999
Q ss_pred CCCCceeEEeecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCC
Q 001477 574 ESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSD 653 (1071)
Q Consensus 574 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 653 (1071)
+ +|+.+..+.+|.. .+.+++...++..++++|+|++++||+.. ++.+.+..++. .|+++.+-++|. +++|+.|
T Consensus 207 ~-~ge~l~~~~ghtn-~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPtt--siWsa~~L~NgD-Ivvg~SD 279 (745)
T KOG0301|consen 207 L-DGEVLLEMHGHTN-FVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTT--SIWSAKVLLNGD-IVVGGSD 279 (745)
T ss_pred c-cCceeeeeeccce-EEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCcc--ceEEEEEeeCCC-EEEeccC
Confidence 9 7999999999998 89999988888999999999999999987 77777776653 688999888886 6788899
Q ss_pred CcEEEEEcCC
Q 001477 654 NGIKILANSD 663 (1071)
Q Consensus 654 g~v~iw~~~~ 663 (1071)
|.||||....
T Consensus 280 G~VrVfT~~k 289 (745)
T KOG0301|consen 280 GRVRVFTVDK 289 (745)
T ss_pred ceEEEEEecc
Confidence 9999998763
No 103
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=9.3e-27 Score=227.17 Aligned_cols=289 Identities=12% Similarity=0.186 Sum_probs=233.4
Q ss_pred eeEEeec-CCCCeEEEEeecCCCeEEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeEEEE
Q 001477 338 TVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW 416 (1071)
Q Consensus 338 ~~~~~~~-h~~~V~~~~fsp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~ 416 (1071)
..+..+. |.++|.|++=+|..-..+|+|+.||.|+|||+...++... +..|.+.|..+++
T Consensus 57 PFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~-------------------f~AH~G~V~Gi~v 117 (433)
T KOG0268|consen 57 PFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRT-------------------FKAHEGLVRGICV 117 (433)
T ss_pred cchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhhe-------------------eecccCceeeEEe
Confidence 3344455 8899999999999844789999999999999998877654 7789999999999
Q ss_pred CCCCCEEEEEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccCCceeEEecCC
Q 001477 417 GPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGH 496 (1071)
Q Consensus 417 spd~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h 496 (1071)
.. ..+++++.|.+|+.|.++.. ..+ ++. ....+..+.-+..+. .++|||. .|.|||.....++..+.-.
T Consensus 118 ~~--~~~~tvgdDKtvK~wk~~~~-p~~---til-g~s~~~gIdh~~~~~--~FaTcGe--~i~IWD~~R~~Pv~smswG 186 (433)
T KOG0268|consen 118 TQ--TSFFTVGDDKTVKQWKIDGP-PLH---TIL-GKSVYLGIDHHRKNS--VFATCGE--QIDIWDEQRDNPVSSMSWG 186 (433)
T ss_pred cc--cceEEecCCcceeeeeccCC-cce---eee-ccccccccccccccc--cccccCc--eeeecccccCCccceeecC
Confidence 77 77889999999999998873 222 332 234566777666666 7888876 4899999999999999888
Q ss_pred CCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCceeEEecCCCCcEEEEEEccCCCEEEEeccCCCCCCeEEEEeCCC
Q 001477 497 EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE 576 (1071)
Q Consensus 497 ~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~ 576 (1071)
...|.++.|+|... .+|++++.|+.|.+||++...+...... .-.-+.++|+|.+-.++++. +|..++.+|++.
T Consensus 187 ~Dti~svkfNpvET-sILas~~sDrsIvLyD~R~~~Pl~KVi~-~mRTN~IswnPeafnF~~a~----ED~nlY~~DmR~ 260 (433)
T KOG0268|consen 187 ADSISSVKFNPVET-SILASCASDRSIVLYDLRQASPLKKVIL-TMRTNTICWNPEAFNFVAAN----EDHNLYTYDMRN 260 (433)
T ss_pred CCceeEEecCCCcc-hheeeeccCCceEEEecccCCccceeee-eccccceecCccccceeecc----ccccceehhhhh
Confidence 89999999999865 7899999999999999998877654332 22346789999666666665 477899999986
Q ss_pred -CceeEEeecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCc
Q 001477 577 -GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNG 655 (1071)
Q Consensus 577 -~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 655 (1071)
..++..+.+|.. .|..+.|+|.|+.+++||.|.+|+||..+.+..-.... ......|.++.|+.|.+++++||+|+.
T Consensus 261 l~~p~~v~~dhvs-AV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYh-tkRMq~V~~Vk~S~Dskyi~SGSdd~n 338 (433)
T KOG0268|consen 261 LSRPLNVHKDHVS-AVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYH-TKRMQHVFCVKYSMDSKYIISGSDDGN 338 (433)
T ss_pred hcccchhhcccce-eEEEeccCCCcchhccccccceEEEeecCCCcchhhhh-HhhhheeeEEEEeccccEEEecCCCcc
Confidence 456777888877 89999999999999999999999999998766443332 122347899999999999999999999
Q ss_pred EEEEEcCCh
Q 001477 656 IKILANSDG 664 (1071)
Q Consensus 656 v~iw~~~~~ 664 (1071)
|++|.....
T Consensus 339 vRlWka~As 347 (433)
T KOG0268|consen 339 VRLWKAKAS 347 (433)
T ss_pred eeeeecchh
Confidence 999987544
No 104
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=7.2e-26 Score=237.55 Aligned_cols=286 Identities=19% Similarity=0.257 Sum_probs=234.8
Q ss_pred EEEeecCCCeEEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeEEEECCCCCEEEEEeCCC
Q 001477 351 SMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKH 430 (1071)
Q Consensus 351 ~~~fsp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~la~~~~dg 430 (1071)
.+..++.+.++|++|+.||.|++|++........ .+ -...+..|.+.|+.++...+|+.|+++|.|.
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s------------~~-~~asme~HsDWVNDiiL~~~~~tlIS~SsDt 95 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPS------------TP-YIASMEHHSDWVNDIILCGNGKTLISASSDT 95 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcc------------cc-hhhhhhhhHhHHhhHHhhcCCCceEEecCCc
Confidence 5555655545899999999999999865433211 00 1122567999999999999999999999999
Q ss_pred eEEEEEecCCCccceeeEeecccCCEEEEEE-ecCCCceEEEEEeCCCcEEEEEccCCc--eeE--------Eec-CCCC
Q 001477 431 IVHLYTYNPTGELRQHLEIDAHVGGVNDIAF-AHPNKQLCIVTCGDDKMIKVWDVVAGR--KQY--------TFE-GHEA 498 (1071)
Q Consensus 431 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~-s~d~~~~~l~s~~~d~~i~iwd~~~~~--~~~--------~~~-~h~~ 498 (1071)
+|++|+...+.. ....++..|...|.|+++ .++.. ++|+||-|+.|.+||+.+|. .+. .+. |+..
T Consensus 96 TVK~W~~~~~~~-~c~stir~H~DYVkcla~~ak~~~--lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~ 172 (735)
T KOG0308|consen 96 TVKVWNAHKDNT-FCMSTIRTHKDYVKCLAYIAKNNE--LVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKD 172 (735)
T ss_pred eEEEeecccCcc-hhHhhhhcccchheeeeecccCce--eEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCcc
Confidence 999999988741 222377789999999999 66666 89999999999999999872 222 233 7889
Q ss_pred CeEEEEecccCCccEEEEEecCCeEEEEEcCCCceeEEecCCCCcEEEEEEccCCCEEEEeccCCCCCCeEEEEeCCCCc
Q 001477 499 PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA 578 (1071)
Q Consensus 499 ~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~ 578 (1071)
+|.+++.++.+ ..+++|+..+.+++||.++......+.+|...|..+..++||+.+++++. |++|++||+...+
T Consensus 173 siYSLA~N~t~--t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sS----DgtIrlWdLgqQr 246 (735)
T KOG0308|consen 173 SIYSLAMNQTG--TIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASS----DGTIRLWDLGQQR 246 (735)
T ss_pred ceeeeecCCcc--eEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCC----CceEEeeeccccc
Confidence 99999988754 89999999999999999999999999999999999999999999999986 8999999999999
Q ss_pred eeEEeecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCCc-eeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCcEE
Q 001477 579 IKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN-MLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIK 657 (1071)
Q Consensus 579 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~ 657 (1071)
++.++..|.. .|.++..+|+-..+++|+.||.|+.=|+++.. ....++. ..+|..+..+.+.+-+-+++.|+.|+
T Consensus 247 Cl~T~~vH~e-~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~---daPv~~l~~~~~~~~~WvtTtds~I~ 322 (735)
T KOG0308|consen 247 CLATYIVHKE-GVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKE---DAPVLKLHLHEHDNSVWVTTTDSSIK 322 (735)
T ss_pred eeeeEEeccC-ceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecC---CCchhhhhhccccCCceeeeccccce
Confidence 9999999998 69999999999999999999999999999843 3333322 23677777776555557788899999
Q ss_pred EEEcC
Q 001477 658 ILANS 662 (1071)
Q Consensus 658 iw~~~ 662 (1071)
-|...
T Consensus 323 rW~~~ 327 (735)
T KOG0308|consen 323 RWKLE 327 (735)
T ss_pred ecCCc
Confidence 99764
No 105
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.94 E-value=2.6e-25 Score=247.92 Aligned_cols=236 Identities=19% Similarity=0.281 Sum_probs=208.8
Q ss_pred CCCCeeEEEECCCCCEEEEEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccC
Q 001477 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA 486 (1071)
Q Consensus 407 h~~~v~~~~~spd~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~ 486 (1071)
+...+.+..|. +.++++++.+.+|++||..++..+.. .+.+|.+.|++++|..-+. ++++|+.|.++++||..+
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~--~l~GH~g~V~~l~~~~~~~--~lvsgS~D~t~rvWd~~s 280 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILT--RLVGHFGGVWGLAFPSGGD--KLVSGSTDKTERVWDCST 280 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEe--eccCCCCCceeEEEecCCC--EEEEEecCCcEEeEecCC
Confidence 56678888887 67899999999999999999876652 3889999999999987455 899999999999999999
Q ss_pred CceeEEecCCCCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCceeEEecCCCCcEEEEEEccCCCEEEEeccCCCCC
Q 001477 487 GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGE 566 (1071)
Q Consensus 487 ~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~ 566 (1071)
|++.+++.+|...|.++...+ ..+++|+.|.+|++|++.++.....+.+|..+|.++..+ +.++++++. +
T Consensus 281 g~C~~~l~gh~stv~~~~~~~----~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~----d 350 (537)
T KOG0274|consen 281 GECTHSLQGHTSSVRCLTIDP----FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSY----D 350 (537)
T ss_pred CcEEEEecCCCceEEEEEccC----ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEec----C
Confidence 999999999999999998754 678889999999999999999999998899999999998 889999986 7
Q ss_pred CeEEEEeCCCCceeEEeecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCC-ceeEEEecCCCCCCcceEEEcCCCC
Q 001477 567 SHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM-NMLTTVDADGGLPASPRLRFNKEGS 645 (1071)
Q Consensus 567 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~ 645 (1071)
+.|.+||+.+++++.++.+|.. .|.++.+.+. +++++|+.|++|++||+.+. +++.++.+|.. -+..+. ..++
T Consensus 351 ~~v~VW~~~~~~cl~sl~gH~~-~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~--~v~~l~--~~~~ 424 (537)
T KOG0274|consen 351 GTVKVWDPRTGKCLKSLSGHTG-RVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTS--LVSSLL--LRDN 424 (537)
T ss_pred ceEEEEEhhhceeeeeecCCcc-eEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCcc--cccccc--cccc
Confidence 7899999999999999999887 8999877765 89999999999999999999 89999987765 344433 4578
Q ss_pred EEEEEeCCCcEEEEEcCCh
Q 001477 646 LLAVTTSDNGIKILANSDG 664 (1071)
Q Consensus 646 ~l~~~~~dg~v~iw~~~~~ 664 (1071)
+|++++.|++|++||..++
T Consensus 425 ~Lvs~~aD~~Ik~WD~~~~ 443 (537)
T KOG0274|consen 425 FLVSSSADGTIKLWDAEEG 443 (537)
T ss_pred eeEeccccccEEEeecccC
Confidence 9999999999999998776
No 106
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.94 E-value=6.8e-25 Score=219.23 Aligned_cols=281 Identities=16% Similarity=0.269 Sum_probs=230.6
Q ss_pred CcceEEEcCCCCEEEEEeCCCcEEEEEcCChhhhhhhhcCCccccccCCCCCCCCCCccccccCCCCccccccCCCCCCC
Q 001477 634 ASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERP 713 (1071)
Q Consensus 634 ~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 713 (1071)
.+.++...|....+.+|+.|..+.++|...+ +.+..+.||
T Consensus 221 gi~ald~~~s~~~ilTGG~d~~av~~d~~s~-q~l~~~~Gh--------------------------------------- 260 (506)
T KOG0289|consen 221 GITALDIIPSSSKILTGGEDKTAVLFDKPSN-QILATLKGH--------------------------------------- 260 (506)
T ss_pred CeeEEeecCCCCcceecCCCCceEEEecchh-hhhhhccCc---------------------------------------
Confidence 4566777776678999999999999998887 667666664
Q ss_pred CCCCCcccccccCCCCcccccccccccccccCccceeccCCCCCcccceeeecCCCcCCCceEEEEEecccchhhhcccc
Q 001477 714 DRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASN 793 (1071)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~~~~~d 793 (1071)
...|..+.|+|+...+++++.|
T Consensus 261 ----------------------------------------------------------~kki~~v~~~~~~~~v~~aSad 282 (506)
T KOG0289|consen 261 ----------------------------------------------------------TKKITSVKFHKDLDTVITASAD 282 (506)
T ss_pred ----------------------------------------------------------ceEEEEEEeccchhheeecCCc
Confidence 4567889999999999999999
Q ss_pred ceeEEEecccccCCCCCccceeecceeccCCCCCccccccCCCCCCCCCeEEEEEecCCcEEEEEe-CCeEEEEECCCCe
Q 001477 794 AVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFK 872 (1071)
Q Consensus 794 g~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~v~~s~d~~~la~~~-dg~i~vwd~~~~~ 872 (1071)
..|+||...... .... .. .| ..+|+.+..+|.|.|+++++ ||++.+.|+.++.
T Consensus 283 ~~i~vws~~~~s-------------------~~~~----~~--~h-~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~ 336 (506)
T KOG0289|consen 283 EIIRVWSVPLSS-------------------EPTS----SR--PH-EEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGS 336 (506)
T ss_pred ceEEeecccccc-------------------Cccc----cc--cc-cccceeeeeccCCcEEEEecCCceEEEEEccCCc
Confidence 999999754311 0001 11 27 99999999999999999999 8999999999999
Q ss_pred EEEEEeCC--CCCeEEEEEcCCCCCEEEEEeCCCeEEEEEccCCeEEEEecCcCCCeeEEEEcCCCCEEEEEeCCCcEEE
Q 001477 873 VMTMFMSP--PPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCM 950 (1071)
Q Consensus 873 ~~~~~~~~--~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~~~v~~l~~s~d~~~l~s~~~d~~v~v 950 (1071)
.+...... .-.+++.+|+| ||.++++|..||.|+|||+.++..+..|.+|+++|+.++|+.+|-|||++++|+.|++
T Consensus 337 ~lt~vs~~~s~v~~ts~~fHp-DgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~l 415 (506)
T KOG0289|consen 337 QLTVVSDETSDVEYTSAAFHP-DGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKL 415 (506)
T ss_pred EEEEEeeccccceeEEeeEcC-CceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEE
Confidence 88777643 23589999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCCceeeeeeecCCCCCCCCCCCceEEEEccCCCEEEEE-ECCeEEEEeCCCCceeecCCCCCCCCCeeEEEEecCC
Q 001477 951 WSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDG 1029 (1071)
Q Consensus 951 Wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d~~i~vwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg 1029 (1071)
||++..+..+...+... .++.++.|.+.|++|+++ .+=.|++++-..+.-........|.+..+++.|....
T Consensus 416 wDLRKl~n~kt~~l~~~-------~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~a 488 (506)
T KOG0289|consen 416 WDLRKLKNFKTIQLDEK-------KEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHA 488 (506)
T ss_pred EEehhhcccceeecccc-------ccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccc
Confidence 99998775554443322 358999999999999985 4556666665333333444445668899999999999
Q ss_pred cEEEEEeCCCeEEEEEc
Q 001477 1030 LLVYAGFCDGAIGVFDA 1046 (1071)
Q Consensus 1030 ~~l~t~~~Dg~i~vwd~ 1046 (1071)
+++++++.|..++++.+
T Consensus 489 q~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 489 QYLASTSMDAILRLYAL 505 (506)
T ss_pred eEEeeccchhheEEeec
Confidence 99999999999888754
No 107
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=8.7e-25 Score=209.91 Aligned_cols=268 Identities=19% Similarity=0.268 Sum_probs=216.0
Q ss_pred CCCeEEEEeecCCCeEEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeEEEECCCCCEEEE
Q 001477 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1071)
Q Consensus 346 ~~~V~~~~fsp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~la~ 425 (1071)
.+.|+.+.|+|.+..|| +++.||++++||+...+... .-.|+.++.+++|.+ ...+++
T Consensus 13 ~d~IS~v~f~~~~~~LL-vssWDgslrlYdv~~~~l~~--------------------~~~~~~plL~c~F~d-~~~~~~ 70 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLL-VSSWDGSLRLYDVPANSLKL--------------------KFKHGAPLLDCAFAD-ESTIVT 70 (323)
T ss_pred hhceeeEEEcCcCCcEE-EEeccCcEEEEeccchhhhh--------------------heecCCceeeeeccC-CceEEE
Confidence 56899999999988555 56799999999998764432 234899999999987 567889
Q ss_pred EeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccCCceeEEecCCCCCeEEEEe
Q 001477 426 AFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCP 505 (1071)
Q Consensus 426 ~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~ 505 (1071)
|+.||.|+.+|++++... .+..|..+|+|+.+++... .+++||.|++|++||.+......++. ....|.++..
T Consensus 71 G~~dg~vr~~Dln~~~~~----~igth~~~i~ci~~~~~~~--~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v 143 (323)
T KOG1036|consen 71 GGLDGQVRRYDLNTGNED----QIGTHDEGIRCIEYSYEVG--CVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDV 143 (323)
T ss_pred eccCceEEEEEecCCcce----eeccCCCceEEEEeeccCC--eEEEcccCccEEEEeccccccccccc-cCceEEEEec
Confidence 999999999999998654 4668999999999998776 79999999999999998765555554 3447888876
Q ss_pred cccCCccEEEEEecCCeEEEEEcCCCceeEEecC--CCCcEEEEEEccCCCEEEEeccCCCCCCeEEEEeCCCC----ce
Q 001477 506 HHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA--PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG----AI 579 (1071)
Q Consensus 506 ~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~--~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~----~~ 579 (1071)
. |+.|+.|+.|..+.+||+++.....+... -.-.++|+++-|++.-.++++. +|.|.+=.+... +.
T Consensus 144 ~----g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSi----eGRVavE~~d~s~~~~sk 215 (323)
T KOG1036|consen 144 S----GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSI----EGRVAVEYFDDSEEAQSK 215 (323)
T ss_pred c----CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEee----cceEEEEccCCchHHhhh
Confidence 4 37899999999999999998777653322 2347899999998877777765 666766555544 33
Q ss_pred eEEeeccccc--------ceeEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEe
Q 001477 580 KRTYSGFRKR--------SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTT 651 (1071)
Q Consensus 580 ~~~~~~~~~~--------~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 651 (1071)
...|+.|... +|++++|+|-.+.|++||.||.|.+||+.+.+.+..+..- ...|..++|+.+|..||+++
T Consensus 216 kyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~--~~SI~slsfs~dG~~LAia~ 293 (323)
T KOG1036|consen 216 KYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKY--ETSISSLSFSMDGSLLAIAS 293 (323)
T ss_pred ceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCC--CCceEEEEeccCCCeEEEEe
Confidence 4456666432 6899999999999999999999999999999988888644 34799999999999999987
Q ss_pred C
Q 001477 652 S 652 (1071)
Q Consensus 652 ~ 652 (1071)
.
T Consensus 294 s 294 (323)
T KOG1036|consen 294 S 294 (323)
T ss_pred c
Confidence 5
No 108
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=4.2e-26 Score=239.25 Aligned_cols=242 Identities=19% Similarity=0.239 Sum_probs=206.7
Q ss_pred EEEEC-CCCCEEEEEeCCCeEEEEEecCCCcc---ceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccCC-
Q 001477 413 RCVWG-PDGLMLGVAFSKHIVHLYTYNPTGEL---RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG- 487 (1071)
Q Consensus 413 ~~~~s-pd~~~la~~~~dg~i~iwd~~~~~~~---~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~- 487 (1071)
.+..+ |.+++|.+||.||.|++|+....... .....++.|...|++++...+++ .|+++|.|-+|++|+...+
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~--tlIS~SsDtTVK~W~~~~~~ 106 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGK--TLISASSDTTVKVWNAHKDN 106 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCC--ceEEecCCceEEEeecccCc
Confidence 34444 36778999999999999998654331 11336788999999999999998 7999999999999999887
Q ss_pred -ceeEEecCCCCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCceeE----------Eec-CCCCcEEEEEEccCCCE
Q 001477 488 -RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV----------DYD-APGNWCTMMAYSADGTR 555 (1071)
Q Consensus 488 -~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~----------~~~-~~~~~i~~~~~s~~~~~ 555 (1071)
-+..+++.|.+.|.|+++.. .+...+++||.|+.|.+||+.++.... .+. ++...|++++.++.|..
T Consensus 107 ~~c~stir~H~DYVkcla~~a-k~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ 185 (735)
T KOG0308|consen 107 TFCMSTIRTHKDYVKCLAYIA-KNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTI 185 (735)
T ss_pred chhHhhhhcccchheeeeecc-cCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceE
Confidence 57788999999999999832 233899999999999999999763311 122 56678999999999988
Q ss_pred EEEeccCCCCCCeEEEEeCCCCceeEEeecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCc
Q 001477 556 LFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPAS 635 (1071)
Q Consensus 556 l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 635 (1071)
+++|+. ++.+++||.++++.+..+.+|.+ .|.++..++||..++++|.||+|++||+...+++.++..|.. .|
T Consensus 186 ivsGgt----ek~lr~wDprt~~kimkLrGHTd-NVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e--~V 258 (735)
T KOG0308|consen 186 IVSGGT----EKDLRLWDPRTCKKIMKLRGHTD-NVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKE--GV 258 (735)
T ss_pred EEecCc----ccceEEeccccccceeeeecccc-ceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccC--ce
Confidence 888876 55599999999999999999998 899999999999999999999999999999999999987765 59
Q ss_pred ceEEEcCCCCEEEEEeCCCcEEEEEcCCh
Q 001477 636 PRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1071)
Q Consensus 636 ~~~~~s~~~~~l~~~~~dg~v~iw~~~~~ 664 (1071)
+++..+|+-..+++|+.||.|..=|+.+.
T Consensus 259 WaL~~~~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 259 WALQSSPSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred EEEeeCCCcceEEecCCCCcEEecccCCc
Confidence 99999999999999999999998887765
No 109
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=2e-25 Score=227.19 Aligned_cols=252 Identities=18% Similarity=0.256 Sum_probs=210.1
Q ss_pred ccceeeEEeec-CCCCeEEEEeecCCCeEEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCee
Q 001477 334 DLTKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVN 412 (1071)
Q Consensus 334 ~~~~~~~~~~~-h~~~V~~~~fsp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~ 412 (1071)
..+....+++. -...|+++.|-.||+ |||+|+..|.|+|+|..+...+. .+.+|+.+|.
T Consensus 55 ~~~~~~~k~~srFk~~v~s~~fR~DG~-LlaaGD~sG~V~vfD~k~r~iLR-------------------~~~ah~apv~ 114 (487)
T KOG0310|consen 55 SVTRSVRKTFSRFKDVVYSVDFRSDGR-LLAAGDESGHVKVFDMKSRVILR-------------------QLYAHQAPVH 114 (487)
T ss_pred cchhhhhhhHHhhccceeEEEeecCCe-EEEccCCcCcEEEeccccHHHHH-------------------HHhhccCcee
Confidence 33444444444 567899999999997 89999999999999976644443 2788999999
Q ss_pred EEEECCC-CCEEEEEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccCC-cee
Q 001477 413 RCVWGPD-GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG-RKQ 490 (1071)
Q Consensus 413 ~~~~spd-~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~~~ 490 (1071)
.+.|+|+ +..+++|+.|+.+++||+.+... ...+.+|...|.|.+|+|.... +++|||.||.|++||+++. ..+
T Consensus 115 ~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v---~~~l~~htDYVR~g~~~~~~~h-ivvtGsYDg~vrl~DtR~~~~~v 190 (487)
T KOG0310|consen 115 VTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV---QAELSGHTDYVRCGDISPANDH-IVVTGSYDGKVRLWDTRSLTSRV 190 (487)
T ss_pred EEEecccCCeEEEecCCCceEEEEEcCCcEE---EEEecCCcceeEeeccccCCCe-EEEecCCCceEEEEEeccCCcee
Confidence 9999994 56788889999999999998763 3378899999999999998776 8999999999999999986 667
Q ss_pred EEecCCCCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCceeEE-ecCCCCcEEEEEEccCCCEEEEeccCCCCCCeE
Q 001477 491 YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD-YDAPGNWCTMMAYSADGTRLFSCGTSKEGESHL 569 (1071)
Q Consensus 491 ~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~-~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i 569 (1071)
.++ .|..+|..+.+.|.+ ..+++++ .+.|++||+.++..... ...|...|+|+++..++..|++++- |+.+
T Consensus 191 ~el-nhg~pVe~vl~lpsg--s~iasAg-Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sL----D~~V 262 (487)
T KOG0310|consen 191 VEL-NHGCPVESVLALPSG--SLIASAG-GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSL----DRHV 262 (487)
T ss_pred EEe-cCCCceeeEEEcCCC--CEEEEcC-CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeeccc----ccce
Confidence 777 499999999999865 6677665 56899999997766554 4449999999999999999999987 8889
Q ss_pred EEEeCCCCceeEEeecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q 001477 570 VEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN 619 (1071)
Q Consensus 570 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 619 (1071)
++||+.+.+.+..+.-.. +|-+++.+|++..++.|..+|.+.+-+...
T Consensus 263 KVfd~t~~Kvv~s~~~~~--pvLsiavs~dd~t~viGmsnGlv~~rr~~~ 310 (487)
T KOG0310|consen 263 KVFDTTNYKVVHSWKYPG--PVLSIAVSPDDQTVVIGMSNGLVSIRRREV 310 (487)
T ss_pred EEEEccceEEEEeeeccc--ceeeEEecCCCceEEEecccceeeeehhhc
Confidence 999988888888776543 799999999999999999999988775443
No 110
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=2.2e-25 Score=213.03 Aligned_cols=297 Identities=15% Similarity=0.211 Sum_probs=244.7
Q ss_pred eeeEEeec-CCCCeEEEEeecCCCeEEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeEEE
Q 001477 337 KTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCV 415 (1071)
Q Consensus 337 ~~~~~~~~-h~~~V~~~~fsp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~ 415 (1071)
..+++.+. |.++||.++-....+ ++.+++.|.+.+||.+++|.++.. +.||.+.|+++.
T Consensus 138 ~~lvre~~GHkDGiW~Vaa~~tqp-i~gtASADhTA~iWs~Esg~CL~~-------------------Y~GH~GSVNsik 197 (481)
T KOG0300|consen 138 FRLVRELEGHKDGIWHVAADSTQP-ICGTASADHTARIWSLESGACLAT-------------------YTGHTGSVNSIK 197 (481)
T ss_pred EeehhhhcccccceeeehhhcCCc-ceeecccccceeEEeeccccceee-------------------ecccccceeeEE
Confidence 44566666 999999999988776 899999999999999999999876 789999999999
Q ss_pred ECCCCCEEEEEeCCCeEEEEEe------cCC------------------------------Ccc-ceeeEeecccCCEEE
Q 001477 416 WGPDGLMLGVAFSKHIVHLYTY------NPT------------------------------GEL-RQHLEIDAHVGGVND 458 (1071)
Q Consensus 416 ~spd~~~la~~~~dg~i~iwd~------~~~------------------------------~~~-~~~~~~~~h~~~v~~ 458 (1071)
|++.+.++++++.|++.+||.. ... ..+ .....+.+|.+.|.+
T Consensus 198 fh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a 277 (481)
T KOG0300|consen 198 FHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSA 277 (481)
T ss_pred eccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEe
Confidence 9999999999999999999972 110 000 123467799999999
Q ss_pred EEEecCCCceEEEEEeCCCcEEEEEccCCceeEEecCCCCCeEEEEecccCCccEEEEEecCCeEEEEEcCCC-ceeEEe
Q 001477 459 IAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL-GSRVDY 537 (1071)
Q Consensus 459 ~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~-~~~~~~ 537 (1071)
+.|...|+ .+++++.|++..+||+++|+.+..+.||....+.++-+|.. .++++.+.|.+.++||++.. ..+..+
T Consensus 278 ~dWL~gg~--Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQ--rLVvTsSrDtTFRLWDFReaI~sV~VF 353 (481)
T KOG0300|consen 278 CDWLAGGQ--QMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQ--RLVVTSSRDTTFRLWDFREAIQSVAVF 353 (481)
T ss_pred hhhhcCcc--eeeeeeccccceeeeeccCceeccccCcchhccccccCCcc--eEEEEeccCceeEeccchhhcceeeee
Confidence 99999998 69999999999999999999999999999999999988876 78999999999999999843 335588
Q ss_pred cCCCCcEEEEEEccCCCEEEEeccCCCCCCeEEEEeCCCCc-eeEEeecccccceeEEEEeCCCCEEEEEeCCCcEEEEe
Q 001477 538 DAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA-IKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWD 616 (1071)
Q Consensus 538 ~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 616 (1071)
.+|...|+++.|..+. .+++++. |.+|++||+++.+ ++.++.... +++.++.+..+..++.--++..|++||
T Consensus 354 QGHtdtVTS~vF~~dd-~vVSgSD----DrTvKvWdLrNMRsplATIRtdS--~~NRvavs~g~~iIAiPhDNRqvRlfD 426 (481)
T KOG0300|consen 354 QGHTDTVTSVVFNTDD-RVVSGSD----DRTVKVWDLRNMRSPLATIRTDS--PANRVAVSKGHPIIAIPHDNRQVRLFD 426 (481)
T ss_pred cccccceeEEEEecCC-ceeecCC----CceEEEeeeccccCcceeeecCC--ccceeEeecCCceEEeccCCceEEEEe
Confidence 9999999999998765 4566663 8889999998754 555665443 788899998888888888999999999
Q ss_pred CCCCceeEEE--ecCCCCCCcceEEEcCCC--CEEEEEeCCCcEEEEEcCCh
Q 001477 617 MDNMNMLTTV--DADGGLPASPRLRFNKEG--SLLAVTTSDNGIKILANSDG 664 (1071)
Q Consensus 617 ~~~~~~~~~~--~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~v~iw~~~~~ 664 (1071)
+......... .-.++...|.|++|..+. .-|++++.|..+.-|++...
T Consensus 427 lnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 427 LNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred cCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 9865433222 234555679999998643 35788899999999998654
No 111
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=2.5e-25 Score=224.56 Aligned_cols=251 Identities=19% Similarity=0.244 Sum_probs=213.3
Q ss_pred cccCCCCeeEEEECCCCCEEEEEeCCCeEEEEEecCCCccc----e----------eeEe-ecccCCEEEEEEecCCCce
Q 001477 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELR----Q----------HLEI-DAHVGGVNDIAFAHPNKQL 468 (1071)
Q Consensus 404 ~~~h~~~v~~~~~spd~~~la~~~~dg~i~iwd~~~~~~~~----~----------~~~~-~~h~~~v~~~~~s~d~~~~ 468 (1071)
+..|.-+|.|++++||+++.++++.+++|.-|++.+++..+ . ...- .+|...+.+++.|+||+
T Consensus 138 ~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk-- 215 (479)
T KOG0299|consen 138 IGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK-- 215 (479)
T ss_pred eccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc--
Confidence 45699999999999999999999999999999998876331 1 0011 27888999999999999
Q ss_pred EEEEEeCCCcEEEEEccCCceeEEecCCCCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCceeEEecCCCCcEEEEE
Q 001477 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMA 548 (1071)
Q Consensus 469 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~ 548 (1071)
+|++|+.|..|.||+.++.+.++.+.+|.+.|.+++|-... +.+++++.|+.|++|+++....+..+-+|...|..+.
T Consensus 216 ylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt--~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~Id 293 (479)
T KOG0299|consen 216 YLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGT--SELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGID 293 (479)
T ss_pred EEEecCCCceEEEecCcccchhhcccccccceeeeeeecCc--cceeeeecCCceEEEehhHhHHHHHHhCCccceeeec
Confidence 89999999999999999999999999999999999997544 7899999999999999998888888899999999998
Q ss_pred EccCCCEEEEeccCCCCCCeEEEEeCCCCceeEEeecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEec
Q 001477 549 YSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA 628 (1071)
Q Consensus 549 ~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 628 (1071)
...-++.+-+++. |+++++|++.. +....|.++.. .+.|++|-.+ ..+++|+.+|.|.+|++.+.+++.+...
T Consensus 294 aL~reR~vtVGgr----DrT~rlwKi~e-esqlifrg~~~-sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~~~ 366 (479)
T KOG0299|consen 294 ALSRERCVTVGGR----DRTVRLWKIPE-ESQLIFRGGEG-SIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTSRL 366 (479)
T ss_pred hhcccceEEeccc----cceeEEEeccc-cceeeeeCCCC-CeeeEEEecc-cceeeccCCceEEEeeecccCceeEeec
Confidence 8888777777765 88899999953 33345666655 7889998754 6899999999999999999998877642
Q ss_pred CC----------CCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCChh
Q 001477 629 DG----------GLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGV 665 (1071)
Q Consensus 629 ~~----------~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~ 665 (1071)
.. +...|++++..|...++++|+.+|.|++|.+.++.
T Consensus 367 AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~ 413 (479)
T KOG0299|consen 367 AHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGL 413 (479)
T ss_pred cccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCc
Confidence 11 11268899999999999999999999999998773
No 112
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.8e-24 Score=207.75 Aligned_cols=244 Identities=18% Similarity=0.246 Sum_probs=205.8
Q ss_pred hcccCCCCeeEEEECCCCCEEEEEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEE
Q 001477 403 LLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 482 (1071)
Q Consensus 403 ~~~~h~~~v~~~~~spd~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iw 482 (1071)
.+..|.++|+++|. +|.++|+||.|-+|+|||+.....+. .+-.|.+.|+++.|.++-....|++|+.||.|.+|
T Consensus 38 ~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg---~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw 112 (362)
T KOG0294|consen 38 AFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLG---ILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIW 112 (362)
T ss_pred cccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhc---ceeccccceEEEEecCCcchhheeeecCCCcEEEE
Confidence 36789999999999 68999999999999999999987666 67789999999999987643368999999999999
Q ss_pred EccCCceeEEecCCCCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCceeEEecCCCCcEEEEEEccCCCEEEEeccC
Q 001477 483 DVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTS 562 (1071)
Q Consensus 483 d~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~ 562 (1071)
+...-.++.++++|.+.|+.++++|++ .+-++.+.|+.++.||+-.++.-........ -..+.|+|.|.+++..+
T Consensus 113 ~~~~W~~~~slK~H~~~Vt~lsiHPS~--KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~-at~v~w~~~Gd~F~v~~-- 187 (362)
T KOG0294|consen 113 RVGSWELLKSLKAHKGQVTDLSIHPSG--KLALSVGGDQVLRTWNLVRGRVAFVLNLKNK-ATLVSWSPQGDHFVVSG-- 187 (362)
T ss_pred EcCCeEEeeeecccccccceeEecCCC--ceEEEEcCCceeeeehhhcCccceeeccCCc-ceeeEEcCCCCEEEEEe--
Confidence 999999999999999999999999976 8999999999999999998877665554332 33499999999888876
Q ss_pred CCCCCeEEEEeCCCCceeEEeecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEE--
Q 001477 563 KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRF-- 640 (1071)
Q Consensus 563 ~d~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~-- 640 (1071)
...|-+|.+.+......+.... .+.++.|. ++..+++|++|+.|.+||.++..+...+..|.. .|.++.+
T Consensus 188 ---~~~i~i~q~d~A~v~~~i~~~~--r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~--RVK~i~~~~ 259 (362)
T KOG0294|consen 188 ---RNKIDIYQLDNASVFREIENPK--RILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHEN--RVKDIASYT 259 (362)
T ss_pred ---ccEEEEEecccHhHhhhhhccc--cceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchh--heeeeEEEe
Confidence 4459999998877666555432 35555554 567899999999999999999888888887755 7877774
Q ss_pred cCCCCEEEEEeCCCcEEEEEcCCh
Q 001477 641 NKEGSLLAVTTSDNGIKILANSDG 664 (1071)
Q Consensus 641 s~~~~~l~~~~~dg~v~iw~~~~~ 664 (1071)
.|++.+|++++.||.|++||+...
T Consensus 260 ~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 260 NPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred cCCceEEEEeccCceEEEEEcccc
Confidence 467889999999999999998765
No 113
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=6.9e-26 Score=221.16 Aligned_cols=286 Identities=17% Similarity=0.272 Sum_probs=227.8
Q ss_pred EeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccCCceeEEecCCCCCeEEEEecccCCccEEEEEecCCeEEEEE
Q 001477 448 EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWL 527 (1071)
Q Consensus 448 ~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd 527 (1071)
.+.+|...|.|++=+|..-. .+++|+.||.|++||+.+..++.+|..|.+.|..|++.. ..+++++.|++|+.|-
T Consensus 61 ~L~gHrdGV~~lakhp~~ls-~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~----~~~~tvgdDKtvK~wk 135 (433)
T KOG0268|consen 61 SLDGHRDGVSCLAKHPNKLS-TVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ----TSFFTVGDDKTVKQWK 135 (433)
T ss_pred hccccccccchhhcCcchhh-hhhccccCceEEEEehhhhhhhheeecccCceeeEEecc----cceEEecCCcceeeee
Confidence 46789999999999997733 689999999999999999999999999999999999975 5689999999999998
Q ss_pred cCCCceeEEecCCCCcEEEEEEccCCCEEEEeccCCCCCCeEEEEeCCCCceeEEeecccccceeEEEEeCCCCE-EEEE
Q 001477 528 YDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNR-FLAA 606 (1071)
Q Consensus 528 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~ 606 (1071)
++.. ....+ .....+..+.-+..+..+++||. .|.|||.....++..+.-..+ .|.++.|+|.... |+++
T Consensus 136 ~~~~-p~~ti-lg~s~~~gIdh~~~~~~FaTcGe------~i~IWD~~R~~Pv~smswG~D-ti~svkfNpvETsILas~ 206 (433)
T KOG0268|consen 136 IDGP-PLHTI-LGKSVYLGIDHHRKNSVFATCGE------QIDIWDEQRDNPVSSMSWGAD-SISSVKFNPVETSILASC 206 (433)
T ss_pred ccCC-cceee-eccccccccccccccccccccCc------eeeecccccCCccceeecCCC-ceeEEecCCCcchheeee
Confidence 7753 22222 22345566666677788888864 399999999999999987766 8999999998755 4556
Q ss_pred eCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCChhhhhhhhcCCccccccCCCCCC
Q 001477 607 GDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPI 686 (1071)
Q Consensus 607 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (1071)
+.|+.|.+||++.+.++..+.... .-+.++|+|++--+++|+.|..++.||+..-...+....
T Consensus 207 ~sDrsIvLyD~R~~~Pl~KVi~~m---RTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~-------------- 269 (433)
T KOG0268|consen 207 ASDRSIVLYDLRQASPLKKVILTM---RTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHK-------------- 269 (433)
T ss_pred ccCCceEEEecccCCccceeeeec---cccceecCccccceeeccccccceehhhhhhcccchhhc--------------
Confidence 699999999999999998876543 357899999888899999999999999865422222211
Q ss_pred CCCCccccccCCCCccccccCCCCCCCCCCCCcccccccCCCCcccccccccccccccCccceeccCCCCCcccceeeec
Q 001477 687 SSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRL 766 (1071)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~ 766 (1071)
T Consensus 270 -------------------------------------------------------------------------------- 269 (433)
T KOG0268|consen 270 -------------------------------------------------------------------------------- 269 (433)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcCCCceEEEEEecccchhhhccccceeEEEecccccCCCCCccceeecceeccCCCCCccccccCCCCCCCCCeEEE
Q 001477 767 PDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACI 846 (1071)
Q Consensus 767 ~~~~~~~~v~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~v 846 (1071)
.|.+.|.++.|||.|+.+++|+.|.+|+||....+. +...+.. .. -..|.||
T Consensus 270 ---dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~-------------------SRdiYht--kR----Mq~V~~V 321 (433)
T KOG0268|consen 270 ---DHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGH-------------------SRDIYHT--KR----MQHVFCV 321 (433)
T ss_pred ---ccceeEEEeccCCCcchhccccccceEEEeecCCCc-------------------chhhhhH--hh----hheeeEE
Confidence 166789999999999999999999999999765321 1111110 00 2459999
Q ss_pred EEecCCcEEEEEe-CCeEEEEECCCCe
Q 001477 847 ALSKNDSYVMSAS-GGKVSLFNMMTFK 872 (1071)
Q Consensus 847 ~~s~d~~~la~~~-dg~i~vwd~~~~~ 872 (1071)
.||.|.+++++|+ |+.|++|.....+
T Consensus 322 k~S~Dskyi~SGSdd~nvRlWka~Ase 348 (433)
T KOG0268|consen 322 KYSMDSKYIISGSDDGNVRLWKAKASE 348 (433)
T ss_pred EEeccccEEEecCCCcceeeeecchhh
Confidence 9999999999999 8999999876543
No 114
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=3e-24 Score=205.05 Aligned_cols=248 Identities=17% Similarity=0.188 Sum_probs=192.8
Q ss_pred cCCCCeeEEEECC-CCCEEEEEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEc
Q 001477 406 DAAISVNRCVWGP-DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDV 484 (1071)
Q Consensus 406 ~h~~~v~~~~~sp-d~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~ 484 (1071)
...+.|.+++||| ....++++|.||+||+|+++....... +....|.++|.+++|+.||. .+++|+.|+.+++||+
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-ka~~~~~~PvL~v~Wsddgs--kVf~g~~Dk~~k~wDL 101 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-KAQQSHDGPVLDVCWSDDGS--KVFSGGCDKQAKLWDL 101 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccc-hhhhccCCCeEEEEEccCCc--eEEeeccCCceEEEEc
Confidence 4577899999999 555677889999999999987433222 35567999999999999998 7999999999999999
Q ss_pred cCCceeEEecCCCCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCceeEEecCCCCcEEEEEEccCCCEEEEeccCCC
Q 001477 485 VAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKE 564 (1071)
Q Consensus 485 ~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d 564 (1071)
.+++ +..+..|.++|.++.|.+...-..|++||.|++|++||++....+..+...+ .++++.. -...++.+..
T Consensus 102 ~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPe-RvYa~Dv--~~pm~vVata--- 174 (347)
T KOG0647|consen 102 ASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPE-RVYAADV--LYPMAVVATA--- 174 (347)
T ss_pred cCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccc-eeeehhc--cCceeEEEec---
Confidence 9995 5567789999999999887655689999999999999999888877766544 3333322 2334555543
Q ss_pred CCCeEEEEeCCCCcee-EEeecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCCc--eeEEEecCCC-------CCC
Q 001477 565 GESHLVEWNESEGAIK-RTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN--MLTTVDADGG-------LPA 634 (1071)
Q Consensus 565 ~~~~i~iwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~-------~~~ 634 (1071)
++.|.+|+++.+... +.....-...+++++..++....+.|+-+|.+.|..++.+. .-..+..|.. .-.
T Consensus 175 -~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYa 253 (347)
T KOG0647|consen 175 -ERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYA 253 (347)
T ss_pred -CCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEE
Confidence 667999999765432 23333333368999999999888999999999999998863 3333443331 335
Q ss_pred cceEEEcCCCCEEEEEeCCCcEEEEEcCCh
Q 001477 635 SPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1071)
Q Consensus 635 v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~ 664 (1071)
|++++|+|.-..|++++.||++.+||-...
T Consensus 254 VNsi~FhP~hgtlvTaGsDGtf~FWDkdar 283 (347)
T KOG0647|consen 254 VNSIAFHPVHGTLVTAGSDGTFSFWDKDAR 283 (347)
T ss_pred ecceEeecccceEEEecCCceEEEecchhh
Confidence 789999999899999999999999997544
No 115
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=4e-25 Score=204.35 Aligned_cols=252 Identities=20% Similarity=0.285 Sum_probs=209.7
Q ss_pred cccCCCCeeEEEECCCCCEEEEEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEec--CCCceEEEEEeCCCcEEE
Q 001477 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAH--PNKQLCIVTCGDDKMIKV 481 (1071)
Q Consensus 404 ~~~h~~~v~~~~~spd~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~--d~~~~~l~s~~~d~~i~i 481 (1071)
-..|.+.|..+...--|++|||++.|++|+|+.++.+.......+|.||.+||+.++|.. -|. +|++++.||.|.|
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~--iLAScsYDgkVIi 84 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGT--ILASCSYDGKVII 84 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCc--EeeEeecCceEEE
Confidence 457999999988888999999999999999999998877666779999999999999976 677 9999999999999
Q ss_pred EEccCCce--eEEecCCCCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCce---eEEecCCCCcEEEEEEccC---C
Q 001477 482 WDVVAGRK--QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS---RVDYDAPGNWCTMMAYSAD---G 553 (1071)
Q Consensus 482 wd~~~~~~--~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~---~~~~~~~~~~i~~~~~s~~---~ 553 (1071)
|.-.+|+- .+....|...|++++|.|.+-|-.|++++.||.|.+.+++.... ......|.-.+++++|.|- |
T Consensus 85 Wke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g 164 (299)
T KOG1332|consen 85 WKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPG 164 (299)
T ss_pred EecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCc
Confidence 99877753 45667899999999999999999999999999999999887622 3355678889999999985 4
Q ss_pred -----------CEEEEeccCCCCCCeEEEEeCCCCc--eeEEeecccccceeEEEEeCCC----CEEEEEeCCCcEEEEe
Q 001477 554 -----------TRLFSCGTSKEGESHLVEWNESEGA--IKRTYSGFRKRSLGVVQFDTTR----NRFLAAGDEFQIKFWD 616 (1071)
Q Consensus 554 -----------~~l~~~~~~~d~~~~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~dg~i~iwd 616 (1071)
+.|++++. |..|.||+...+. ..+++.+|.+ .|+.++|.|.- .++++++.||++.||.
T Consensus 165 ~~~~~~~~~~~krlvSgGc----Dn~VkiW~~~~~~w~~e~~l~~H~d-wVRDVAwaP~~gl~~s~iAS~SqDg~viIwt 239 (299)
T KOG1332|consen 165 SLVDQGPAAKVKRLVSGGC----DNLVKIWKFDSDSWKLERTLEGHKD-WVRDVAWAPSVGLPKSTIASCSQDGTVIIWT 239 (299)
T ss_pred cccccCcccccceeeccCC----ccceeeeecCCcchhhhhhhhhcch-hhhhhhhccccCCCceeeEEecCCCcEEEEE
Confidence 56888875 7889999988763 4456888888 89999999975 5799999999999998
Q ss_pred CCCC-ceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcC
Q 001477 617 MDNM-NMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANS 662 (1071)
Q Consensus 617 ~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~ 662 (1071)
.+.. +.-...-.+.....+..+.|+..|+.|++++.|+.|.+|.-.
T Consensus 240 ~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 240 KDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred ecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 7732 111111122334578999999999999999999999999754
No 116
>PTZ00420 coronin; Provisional
Probab=99.93 E-value=1.1e-23 Score=235.44 Aligned_cols=228 Identities=14% Similarity=0.214 Sum_probs=182.5
Q ss_pred EeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecC-CCceEEEEEeCCCcEEEEEccCCc--------eeEEecCC
Q 001477 426 AFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHP-NKQLCIVTCGDDKMIKVWDVVAGR--------KQYTFEGH 496 (1071)
Q Consensus 426 ~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d-~~~~~l~s~~~d~~i~iwd~~~~~--------~~~~~~~h 496 (1071)
|+.++.|++|+...... ...+.+|.++|.+++|+|+ +. +|++|+.|++|++||+.++. ++..+.+|
T Consensus 50 GG~~gvI~L~~~~r~~~---v~~L~gH~~~V~~lafsP~~~~--lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH 124 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPP---VIKLKGHTSSILDLQFNPCFSE--ILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGH 124 (568)
T ss_pred CCceeEEEeeecCCCce---EEEEcCCCCCEEEEEEcCCCCC--EEEEEeCCCeEEEEECCCCCccccccccceEEeecC
Confidence 56688999999876543 3378899999999999997 55 89999999999999998642 34567899
Q ss_pred CCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCceeEEecCCCCcEEEEEEccCCCEEEEeccCCCCCCeEEEEeCCC
Q 001477 497 EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE 576 (1071)
Q Consensus 497 ~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~ 576 (1071)
...|.+++|+|.+. .++++++.|++|++||++++.....+. +...|.+++|+|+|.+|++++. ++.|++||+++
T Consensus 125 ~~~V~sVaf~P~g~-~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~----D~~IrIwD~Rs 198 (568)
T PTZ00420 125 KKKISIIDWNPMNY-YIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCV----GKHMHIIDPRK 198 (568)
T ss_pred CCcEEEEEECCCCC-eEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEec----CCEEEEEECCC
Confidence 99999999999752 456899999999999999888766665 4568999999999999998874 77899999999
Q ss_pred CceeEEeecccccc----eeEEEEeCCCCEEEEEeCCC----cEEEEeCCC-CceeEEEecCCCCCCcceEEEcCCCCEE
Q 001477 577 GAIKRTYSGFRKRS----LGVVQFDTTRNRFLAAGDEF----QIKFWDMDN-MNMLTTVDADGGLPASPRLRFNKEGSLL 647 (1071)
Q Consensus 577 ~~~~~~~~~~~~~~----v~~~~~~~~~~~l~~~~~dg----~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l 647 (1071)
++.+.++.+|.+.. +....|++++++++++|.|+ +|++||++. ++++..+..+.....+......++|.++
T Consensus 199 g~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~ 278 (568)
T PTZ00420 199 QEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIY 278 (568)
T ss_pred CcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEE
Confidence 99999999987621 22234568999999988664 799999995 6677666655443333334445568899
Q ss_pred EEEeCCCcEEEEEcCCh
Q 001477 648 AVTTSDNGIKILANSDG 664 (1071)
Q Consensus 648 ~~~~~dg~v~iw~~~~~ 664 (1071)
++|+.|++|++|++..+
T Consensus 279 lsGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 279 LIGKGDGNCRYYQHSLG 295 (568)
T ss_pred EEEECCCeEEEEEccCC
Confidence 99999999999999765
No 117
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.93 E-value=1.4e-24 Score=219.73 Aligned_cols=267 Identities=14% Similarity=0.249 Sum_probs=216.1
Q ss_pred eeEEeecCCCCeEEEEeecCCCeEEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeEEEEC
Q 001477 338 TVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 417 (1071)
Q Consensus 338 ~~~~~~~h~~~V~~~~fsp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~s 417 (1071)
+....+.|.++|+.+..-|..+.++|+++..+.|.|||...-.-.... .+...+...+.+|...-+.++|+
T Consensus 116 ~i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~---------~~~~~Pdl~L~gH~~eg~glsWn 186 (422)
T KOG0264|consen 116 EISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKA---------SGECRPDLRLKGHEKEGYGLSWN 186 (422)
T ss_pred EEEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccc---------cccCCCceEEEeecccccccccc
Confidence 345556699999999999999999999999999999998754332210 00112233478999988999999
Q ss_pred CCC-CEEEEEeCCCeEEEEEecCCCc----cceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEcc--CCcee
Q 001477 418 PDG-LMLGVAFSKHIVHLYTYNPTGE----LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV--AGRKQ 490 (1071)
Q Consensus 418 pd~-~~la~~~~dg~i~iwd~~~~~~----~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~--~~~~~ 490 (1071)
+.. -.|++|+.|++|++||++.... +.....+.+|...|..++|++-... ++++++.|+.+.|||++ +.++.
T Consensus 187 ~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~-lF~sv~dd~~L~iwD~R~~~~~~~ 265 (422)
T KOG0264|consen 187 RQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHED-LFGSVGDDGKLMIWDTRSNTSKPS 265 (422)
T ss_pred cccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchh-hheeecCCCeEEEEEcCCCCCCCc
Confidence 954 4889999999999999986543 5556678899999999999998877 79999999999999999 56667
Q ss_pred EEecCCCCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCce-eEEecCCCCcEEEEEEccCCCEEEEeccCCCCCCeE
Q 001477 491 YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS-RVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHL 569 (1071)
Q Consensus 491 ~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~-~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i 569 (1071)
+...+|.+.|+|++|+|.. +.+||+||.|++|.+||+++... ...+..|...|.++.|||....+++.+. .|+.+
T Consensus 266 ~~~~ah~~~vn~~~fnp~~-~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg---~D~rl 341 (422)
T KOG0264|consen 266 HSVKAHSAEVNCVAFNPFN-EFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSG---TDRRL 341 (422)
T ss_pred ccccccCCceeEEEeCCCC-CceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecc---cCCcE
Confidence 7888999999999999975 58999999999999999998765 4578899999999999998766554332 38889
Q ss_pred EEEeCCCC--------------ceeEEeecccccceeEEEEeCCCCEEE-EEeCCCcEEEEeCCC
Q 001477 570 VEWNESEG--------------AIKRTYSGFRKRSLGVVQFDTTRNRFL-AAGDEFQIKFWDMDN 619 (1071)
Q Consensus 570 ~iwd~~~~--------------~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~ 619 (1071)
.+||+..- +++..-.||.. .|..+.|+|+...++ +.++|+.+.||.+..
T Consensus 342 ~vWDls~ig~eq~~eda~dgppEllF~HgGH~~-kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 342 NVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTA-KVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred EEEeccccccccChhhhccCCcceeEEecCccc-ccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 99998631 23455567776 799999999987755 578999999999863
No 118
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.93 E-value=2.9e-24 Score=240.54 Aligned_cols=249 Identities=14% Similarity=0.242 Sum_probs=205.8
Q ss_pred cCCCCeeEEEECCCCCEEEEEe--CCCeEEEEEecCC--------C-ccceeeEeecccCCEEEEEEecCCCceEEEEEe
Q 001477 406 DAAISVNRCVWGPDGLMLGVAF--SKHIVHLYTYNPT--------G-ELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG 474 (1071)
Q Consensus 406 ~h~~~v~~~~~spd~~~la~~~--~dg~i~iwd~~~~--------~-~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~ 474 (1071)
.++..|.++..+|||..+|+|+ .|+.++||+.+.- . ..+....+..|.+.|+|+.|+|||+ +||+|+
T Consensus 11 H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~--~lAsGS 88 (942)
T KOG0973|consen 11 HNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGS--YLASGS 88 (942)
T ss_pred cCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCC--eEeecc
Confidence 3456799999999999999999 8999999987531 1 1223346678999999999999999 899999
Q ss_pred CCCcEEEEEccC-------C-----------ceeEEecCCCCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCceeEE
Q 001477 475 DDKMIKVWDVVA-------G-----------RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD 536 (1071)
Q Consensus 475 ~d~~i~iwd~~~-------~-----------~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~ 536 (1071)
+|+.|.+|+... | ++...+.+|...|..++|+|++ .++++++.|++|.+|+..+.+....
T Consensus 89 DD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~--~~lvS~s~DnsViiwn~~tF~~~~v 166 (942)
T KOG0973|consen 89 DDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDD--SLLVSVSLDNSVIIWNAKTFELLKV 166 (942)
T ss_pred CcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCc--cEEEEecccceEEEEccccceeeee
Confidence 999999999762 1 2567889999999999999954 8999999999999999999988889
Q ss_pred ecCCCCcEEEEEEccCCCEEEEeccCCCCCCeEEEEeCCCCceeEEeecccc-----cceeEEEEeCCCCEEEEEe----
Q 001477 537 YDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK-----RSLGVVQFDTTRNRFLAAG---- 607 (1071)
Q Consensus 537 ~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~---- 607 (1071)
+.+|...|..+.|.|-|+|+++-+. |++|++|+..+....+.+..+.. ..+..+.|+|||.+|++.-
T Consensus 167 l~~H~s~VKGvs~DP~Gky~ASqsd----Drtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~ 242 (942)
T KOG0973|consen 167 LRGHQSLVKGVSWDPIGKYFASQSD----DRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNG 242 (942)
T ss_pred eecccccccceEECCccCeeeeecC----CceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccC
Confidence 9999999999999999999999875 88899999887777777665433 2467899999999999853
Q ss_pred CCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCC-----CC------------EEEEEeCCCcEEEEEcCCh
Q 001477 608 DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKE-----GS------------LLAVTTSDNGIKILANSDG 664 (1071)
Q Consensus 608 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~-----~~------------~l~~~~~dg~v~iw~~~~~ 664 (1071)
.-.++.|.+..+.+.-..+-+|.. ++.++.|+|. .. .+|+|+.|++|-||.....
T Consensus 243 ~~~~~~IieR~tWk~~~~LvGH~~--p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~ 314 (942)
T KOG0973|consen 243 GKSTIAIIERGTWKVDKDLVGHSA--PVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALP 314 (942)
T ss_pred CcceeEEEecCCceeeeeeecCCC--ceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCC
Confidence 345688888877776667766654 8999999882 11 6788999999999987544
No 119
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=8.8e-24 Score=202.73 Aligned_cols=219 Identities=13% Similarity=0.131 Sum_probs=154.9
Q ss_pred hhcccCCCCeeEEEECCCCCEEEEEeCCCeEEEEEecCCCc-----cceeeEeecccCCEEEEEEecCCCceEEEEEeCC
Q 001477 402 ALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGE-----LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD 476 (1071)
Q Consensus 402 ~~~~~h~~~v~~~~~spd~~~la~~~~dg~i~iwd~~~~~~-----~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d 476 (1071)
..+++|++.|++++||.||++||+++.|+.|++|+++.-.. ++.... -+.-+.+.|+||-+. +++++-..
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve----~dhpT~V~FapDc~s-~vv~~~~g 154 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVE----YDHPTRVVFAPDCKS-VVVSVKRG 154 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhcccc----CCCceEEEECCCcce-EEEEEccC
Confidence 34889999999999999999999999999999999986322 111111 124578899999986 56666666
Q ss_pred CcEEEEEccCCceeEEecCCCCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCceeEEecCCCCcEEEEEEccCCCEE
Q 001477 477 KMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRL 556 (1071)
Q Consensus 477 ~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 556 (1071)
.++++|-+...+- ...+...+. ||--. ....|.-.+..+-....+.++
T Consensus 155 ~~l~vyk~~K~~d------G~~~~~~v~---------------------~D~~~-----f~~kh~v~~i~iGiA~~~k~i 202 (420)
T KOG2096|consen 155 NKLCVYKLVKKTD------GSGSHHFVH---------------------IDNLE-----FERKHQVDIINIGIAGNAKYI 202 (420)
T ss_pred CEEEEEEeeeccc------CCCCccccc---------------------ccccc-----cchhcccceEEEeecCCceEE
Confidence 7888887543221 111111111 21000 001123344445556677888
Q ss_pred EEeccCCCCCCeEEEEeCCCCceeEEeecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCC---C---ceeEEEecCC
Q 001477 557 FSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN---M---NMLTTVDADG 630 (1071)
Q Consensus 557 ~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~---~---~~~~~~~~~~ 630 (1071)
++++. +..|.+|+++ |+.+..+..... .-...+.+|+|+++++++..-.|++|.+-- | +....++..+
T Consensus 203 msas~----dt~i~lw~lk-Gq~L~~idtnq~-~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkG 276 (420)
T KOG2096|consen 203 MSASL----DTKICLWDLK-GQLLQSIDTNQS-SNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKG 276 (420)
T ss_pred EEecC----CCcEEEEecC-Cceeeeeccccc-cccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheecc
Confidence 88876 6669999998 888888776655 456688999999999999888899998642 2 2233445556
Q ss_pred CCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 001477 631 GLPASPRLRFNKEGSLLAVTTSDNGIKILANSD 663 (1071)
Q Consensus 631 ~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~ 663 (1071)
|...|..++|+++...+++.+.||++++||.+-
T Consensus 277 H~saV~~~aFsn~S~r~vtvSkDG~wriwdtdV 309 (420)
T KOG2096|consen 277 HQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDV 309 (420)
T ss_pred chhheeeeeeCCCcceeEEEecCCcEEEeeccc
Confidence 667899999999999999999999999999753
No 120
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1.6e-22 Score=184.22 Aligned_cols=246 Identities=12% Similarity=0.135 Sum_probs=198.4
Q ss_pred CCCceEEEEEecccchhhhccccceeEEEecccccCCCCCccceeecceeccCCCCCccccccCCCCCCCCCeEEEEEec
Q 001477 771 AASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK 850 (1071)
Q Consensus 771 ~~~~v~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~v~~s~ 850 (1071)
|.+.|.|.+|||+|..++++++|.+|++..++.... .....++...-| .+.|..++|-.
T Consensus 88 hkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~--------------------~~~g~dle~nmh-dgtirdl~fld 146 (350)
T KOG0641|consen 88 HKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTC--------------------NATGHDLEFNMH-DGTIRDLAFLD 146 (350)
T ss_pred cCccEEEEEecCccCeEEecCCCceEEEEecccccc--------------------cccCcceeeeec-CCceeeeEEec
Confidence 789999999999999999999999999976543222 222222222237 89999999964
Q ss_pred ----CCcEEEEEe--CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEccCCeEEEEecC--
Q 001477 851 ----NDSYVMSAS--GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKG-- 922 (1071)
Q Consensus 851 ----d~~~la~~~--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~l~~-- 922 (1071)
.+..|++++ |..|++-|..+++..+.+.+|++.|.++-- - ++-++++|+.|.+|++||++-..++.++..
T Consensus 147 ~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilalys-w-n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~ 224 (350)
T KOG0641|consen 147 DPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALYS-W-NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDF 224 (350)
T ss_pred CCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEEEE-e-cCcEEEccCCCceEEEEeeeccceeeeccCcc
Confidence 356888887 778888899999999999999999988742 2 578999999999999999998888777641
Q ss_pred c-----CCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeecCCCCCCCCCCCceEEEEccCCCEEEEE-ECCe
Q 001477 923 H-----QNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQ 996 (1071)
Q Consensus 923 h-----~~~v~~l~~s~d~~~l~s~~~d~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d~~ 996 (1071)
| ++.|.+++..|.|++|+++-.|....+||+..+..++. ...|. ..|+++.|||...|+.++ .|..
T Consensus 225 ~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~-----f~phs---adir~vrfsp~a~yllt~syd~~ 296 (350)
T KOG0641|consen 225 HDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQR-----FHPHS---ADIRCVRFSPGAHYLLTCSYDMK 296 (350)
T ss_pred cCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeee-----eCCCc---cceeEEEeCCCceEEEEecccce
Confidence 2 35799999999999999999999999999999886543 33333 779999999999999995 6999
Q ss_pred EEEEeCCCCceeecC--CCCCCCCCeeEEEEecCCcEEEEEeCCCeEEEEEcC
Q 001477 997 ISVYDSKLECSRSWS--PKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAE 1047 (1071)
Q Consensus 997 i~vwd~~~~~~~~~~--~~~~h~~~v~~~~~s~dg~~l~t~~~Dg~i~vwd~~ 1047 (1071)
|++-|+.+.....+. ....|...+..+.|.|..--+++.+.|+++.+|-++
T Consensus 297 ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 297 IKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred EEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 999999655443322 123568889999999998889999999999999765
No 121
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.92 E-value=4.2e-24 Score=216.84 Aligned_cols=293 Identities=14% Similarity=0.210 Sum_probs=234.4
Q ss_pred eeEEeecCCCCeEEEEeecCCCeEEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeEEEEC
Q 001477 338 TVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 417 (1071)
Q Consensus 338 ~~~~~~~h~~~V~~~~fsp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~s 417 (1071)
+.+.++.|..-|+++++|...+ .+++|+ .|.|+|||+....... .+.-.| .-....-|.++..+
T Consensus 411 rq~~tL~HGEvVcAvtIS~~tr-hVyTgG-kgcVKVWdis~pg~k~--PvsqLd------------cl~rdnyiRSckL~ 474 (705)
T KOG0639|consen 411 RQINTLAHGEVVCAVTISNPTR-HVYTGG-KGCVKVWDISQPGNKS--PVSQLD------------CLNRDNYIRSCKLL 474 (705)
T ss_pred HhhhhhccCcEEEEEEecCCcc-eeEecC-CCeEEEeeccCCCCCC--cccccc------------ccCcccceeeeEec
Confidence 3467788999999999999987 577877 6899999997542111 110000 12245679999999
Q ss_pred CCCCEEEEEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccCCceeEEecCCC
Q 001477 418 PDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHE 497 (1071)
Q Consensus 418 pd~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~ 497 (1071)
|||+.|++|+.-.++.|||+...... ...++..-.-...+++.+||.+ +.+++..||.|.|||+.+...++.|+||.
T Consensus 475 pdgrtLivGGeastlsiWDLAapTpr-ikaeltssapaCyALa~spDak--vcFsccsdGnI~vwDLhnq~~VrqfqGht 551 (705)
T KOG0639|consen 475 PDGRTLIVGGEASTLSIWDLAAPTPR-IKAELTSSAPACYALAISPDAK--VCFSCCSDGNIAVWDLHNQTLVRQFQGHT 551 (705)
T ss_pred CCCceEEeccccceeeeeeccCCCcc-hhhhcCCcchhhhhhhcCCccc--eeeeeccCCcEEEEEcccceeeecccCCC
Confidence 99999999999999999999875432 1123333345678899999999 88999999999999999999999999999
Q ss_pred CCeEEEEecccCCccEEEEEecCCeEEEEEcCCCceeEEecCCCCcEEEEEEccCCCEEEEeccCCCCCCeEEEEeCCCC
Q 001477 498 APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG 577 (1071)
Q Consensus 498 ~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~ 577 (1071)
+.+.||.++++ |..|.+|+-|++||.||++.+....... ....|.++.++|.+.+++.+-. ++.+.+.... +
T Consensus 552 DGascIdis~d--GtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMe----ns~vevlh~s-k 623 (705)
T KOG0639|consen 552 DGASCIDISKD--GTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGME----NSNVEVLHTS-K 623 (705)
T ss_pred CCceeEEecCC--CceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecc----cCcEEEEecC-C
Confidence 99999999864 4899999999999999999877665443 3458999999999999999875 5556666544 3
Q ss_pred ceeEEeecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCcEE
Q 001477 578 AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIK 657 (1071)
Q Consensus 578 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~ 657 (1071)
.....+..|.. .|.++.|.+.|+++++.+.|..+..|....|..+...+.. ..|.++.++.|.++|++|+.|....
T Consensus 624 p~kyqlhlheS-cVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~---SsVlsCDIS~ddkyIVTGSGdkkAT 699 (705)
T KOG0639|consen 624 PEKYQLHLHES-CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKES---SSVLSCDISFDDKYIVTGSGDKKAT 699 (705)
T ss_pred ccceeeccccc-EEEEEEecccCceeeecCchhhhhhccCccccceeecccc---CcceeeeeccCceEEEecCCCcceE
Confidence 33334555555 7999999999999999999999999999988877766533 4799999999999999999998888
Q ss_pred EEEc
Q 001477 658 ILAN 661 (1071)
Q Consensus 658 iw~~ 661 (1071)
+|.+
T Consensus 700 VYeV 703 (705)
T KOG0639|consen 700 VYEV 703 (705)
T ss_pred EEEE
Confidence 8864
No 122
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.9e-22 Score=193.92 Aligned_cols=282 Identities=12% Similarity=0.216 Sum_probs=220.5
Q ss_pred EEEEEeCCCcEEEEEccC------------CceeEEecCCCCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCceeEE
Q 001477 469 CIVTCGDDKMIKVWDVVA------------GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD 536 (1071)
Q Consensus 469 ~l~s~~~d~~i~iwd~~~------------~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~ 536 (1071)
.|+.|+....|.-+++.- -.++..+..|.+.+++++.+ +.++++|+.|-+|++||++.......
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs----~~~~aSGssDetI~IYDm~k~~qlg~ 78 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS----GPYVASGSSDETIHIYDMRKRKQLGI 78 (362)
T ss_pred eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec----ceeEeccCCCCcEEEEeccchhhhcc
Confidence 356666666665555431 12356778899999999985 37999999999999999999988888
Q ss_pred ecCCCCcEEEEEEccCCC--EEEEeccCCCCCCeEEEEeCCCCceeEEeecccccceeEEEEeCCCCEEEEEeCCCcEEE
Q 001477 537 YDAPGNWCTMMAYSADGT--RLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKF 614 (1071)
Q Consensus 537 ~~~~~~~i~~~~~s~~~~--~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 614 (1071)
+..|.+.|+++.|.++-. +|++|+. ||.|.+|+......+.++++|.. .|+.++.+|.++.-++.+.|+.++.
T Consensus 79 ll~HagsitaL~F~~~~S~shLlS~sd----DG~i~iw~~~~W~~~~slK~H~~-~Vt~lsiHPS~KLALsVg~D~~lr~ 153 (362)
T KOG0294|consen 79 LLSHAGSITALKFYPPLSKSHLLSGSD----DGHIIIWRVGSWELLKSLKAHKG-QVTDLSIHPSGKLALSVGGDQVLRT 153 (362)
T ss_pred eeccccceEEEEecCCcchhheeeecC----CCcEEEEEcCCeEEeeeeccccc-ccceeEecCCCceEEEEcCCceeee
Confidence 888999999999999775 8999875 88999999999999999999998 6999999999999999999999999
Q ss_pred EeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCChhhhhhhhcCCccccccCCCCCCCCCCcccc
Q 001477 615 WDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTIN 694 (1071)
Q Consensus 615 wd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 694 (1071)
||+-.|+.-..+..... ...+.|+|.|.+++.++.+ .|-+|.+.+. .++..+..
T Consensus 154 WNLV~Gr~a~v~~L~~~---at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A-~v~~~i~~--------------------- 207 (362)
T KOG0294|consen 154 WNLVRGRVAFVLNLKNK---ATLVSWSPQGDHFVVSGRN-KIDIYQLDNA-SVFREIEN--------------------- 207 (362)
T ss_pred ehhhcCccceeeccCCc---ceeeEEcCCCCEEEEEecc-EEEEEecccH-hHhhhhhc---------------------
Confidence 99999988777765432 3559999999999888876 6888877655 22221110
Q ss_pred ccCCCCccccccCCCCCCCCCCCCcccccccCCCCcccccccccccccccCccceeccCCCCCcccceeeecCCCcCCCc
Q 001477 695 ALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASK 774 (1071)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~ 774 (1071)
T Consensus 208 -------------------------------------------------------------------------------- 207 (362)
T KOG0294|consen 208 -------------------------------------------------------------------------------- 207 (362)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEEEecccchhhhccccceeEEEecccccCCCCCccceeecceeccCCCCCccccccCCCCCCCCCeEEEEEecCCcE
Q 001477 775 VVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSY 854 (1071)
Q Consensus 775 v~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~v~~s~d~~~ 854 (1071)
...+.|+.|- ++..
T Consensus 208 -----------------------------------------------------------------~~r~l~~~~l-~~~~ 221 (362)
T KOG0294|consen 208 -----------------------------------------------------------------PKRILCATFL-DGSE 221 (362)
T ss_pred -----------------------------------------------------------------cccceeeeec-CCce
Confidence 1123333332 4556
Q ss_pred EEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEE-cCCCCCEEEEEeCCCeEEEEEccCC-----eEEEEecCcCCCe
Q 001477 855 VMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAF-HPQDNNIIAIGMEDSSVQIYNVRVD-----EVKTKLKGHQNRI 927 (1071)
Q Consensus 855 la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~-sp~~~~~la~g~~dg~v~vwd~~~~-----~~~~~l~~h~~~v 927 (1071)
|++|. |+.|.+||.++..+...+.+|..+|.++.+ ...++.+|++++.||.|+|||++.. +++..+.- ..++
T Consensus 222 L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~-~~Rl 300 (362)
T KOG0294|consen 222 LLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKKRPTLLAELNT-NVRL 300 (362)
T ss_pred EEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccccccCCcceeEEeec-CCcc
Confidence 66776 789999999999999999999999999984 3327789999999999999999865 33444432 3445
Q ss_pred eEEEE
Q 001477 928 TGLAF 932 (1071)
Q Consensus 928 ~~l~~ 932 (1071)
+|+..
T Consensus 301 tCl~~ 305 (362)
T KOG0294|consen 301 TCLRV 305 (362)
T ss_pred ceeee
Confidence 55543
No 123
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=3.6e-21 Score=210.95 Aligned_cols=503 Identities=13% Similarity=0.145 Sum_probs=318.0
Q ss_pred EEEEeecCCCeEEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeEEEECCCC---CEEEEE
Q 001477 350 MSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDG---LMLGVA 426 (1071)
Q Consensus 350 ~~~~fsp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd~---~~la~~ 426 (1071)
....||+|++.++.+ .+..|.||...+|+++.. +.+|..++..+.+.|.. .++.++
T Consensus 20 ~~avfSnD~k~l~~~--~~~~V~VyS~~Tg~~i~~-------------------l~~~~a~l~s~~~~~~~~~~~~~~~~ 78 (792)
T KOG1963|consen 20 SPAVFSNDAKFLFLC--TGNFVKVYSTATGECITS-------------------LEDHTAPLTSVIVLPSSENANYLIVC 78 (792)
T ss_pred cccccccCCcEEEEe--eCCEEEEEecchHhhhhh-------------------cccccCccceeeecCCCccceEEEEE
Confidence 345789999865443 367999999999998864 78899999999998854 477799
Q ss_pred eCCCeEEEEEecCCCccceeeEeecccCCEEEEEEec----CCCceEEEEEeCCC------------cEEEEEccC--Cc
Q 001477 427 FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAH----PNKQLCIVTCGDDK------------MIKVWDVVA--GR 488 (1071)
Q Consensus 427 ~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~----d~~~~~l~s~~~d~------------~i~iwd~~~--~~ 488 (1071)
+.||.|++||...+..++ ++..+ .++..+.+.| ... .+..+..|. +++-..+.+ ..
T Consensus 79 sl~G~I~vwd~~~~~Llk---t~~~~-~~v~~~~~~~~~a~~s~--~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~ 152 (792)
T KOG1963|consen 79 SLDGTIRVWDWSDGELLK---TFDNN-LPVHALVYKPAQADISA--NVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSA 152 (792)
T ss_pred ecCccEEEecCCCcEEEE---EEecC-CceeEEEechhHhCccc--eeEeecccceeeeecccccccceeeeEeeecccc
Confidence 999999999999987665 33322 2344443322 111 111111111 111111111 00
Q ss_pred eeEEecCCCCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCceeE----EecCCCCcEEEEEEccCCCEEEEeccCCC
Q 001477 489 KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV----DYDAPGNWCTMMAYSADGTRLFSCGTSKE 564 (1071)
Q Consensus 489 ~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~----~~~~~~~~i~~~~~s~~~~~l~~~~~~~d 564 (1071)
....+..|.. -.++..++.+ .+.....+..+.+|+........ .-..|...+++.+++|.+++++++..
T Consensus 153 ~~d~~~~~~~-~~~I~~~~~g---e~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~--- 225 (792)
T KOG1963|consen 153 KGDFLKEHQE-PKSIVDNNSG---EFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDS--- 225 (792)
T ss_pred chhhhhhhcC-CccEEEcCCc---eEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEecc---
Confidence 1111122322 3455555543 34455566778889887655222 11224446899999999999999865
Q ss_pred CCCeEEEEeCCC----CceeEEeecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEE
Q 001477 565 GESHLVEWNESE----GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRF 640 (1071)
Q Consensus 565 ~~~~i~iwd~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 640 (1071)
+|+|.+|.--. ......+.-|.+ .|.+++|+++|.+|++||.+|.+.+|.+.+++ .+-++--+ .+|..+.+
T Consensus 226 -dGrI~vw~d~~~~~~~~t~t~lHWH~~-~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLg--s~I~~i~v 300 (792)
T KOG1963|consen 226 -DGRILVWRDFGSSDDSETCTLLHWHHD-EVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLG--SPILHIVV 300 (792)
T ss_pred -CCcEEEEeccccccccccceEEEeccc-ccceeEEecCCceEeecccceEEEEEeecCCC-cccccccC--CeeEEEEE
Confidence 78899996432 224456677777 89999999999999999999999999999988 33333223 37899999
Q ss_pred cCCCCEEEEEeCCCcEEEEEcCChhhhhhhhcCCccccccCCCCCCCCCCccccccCCCCccccccCCCCCCCCCCCCcc
Q 001477 641 NKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAV 720 (1071)
Q Consensus 641 s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (1071)
+||+...+....|+.|.+....+. .....+.+..... +.
T Consensus 301 S~ds~~~sl~~~DNqI~li~~~dl-~~k~tIsgi~~~~-------------------------------~~--------- 339 (792)
T KOG1963|consen 301 SPDSDLYSLVLEDNQIHLIKASDL-EIKSTISGIKPPT-------------------------------PS--------- 339 (792)
T ss_pred cCCCCeEEEEecCceEEEEeccch-hhhhhccCccCCC-------------------------------cc---------
Confidence 999999999999999999987665 3333333321100 00
Q ss_pred cccccCCCCcccccccccccccccCccceeccCCCCCcccceeeecCCCcCCCceEEEEEecccchhhhccccceeEEEe
Q 001477 721 SISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWK 800 (1071)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~~~~~dg~v~vw~ 800 (1071)
. .....+-.+.++++|.-+.++-.+..|.|++||
T Consensus 340 -------------------------------~---------------k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~yd 373 (792)
T KOG1963|consen 340 -------------------------------T---------------KTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYD 373 (792)
T ss_pred -------------------------------c---------------cccccccceeEEEcCCCCceeecCCCceEEEEe
Confidence 0 000233456677778666677777888999998
Q ss_pred cccccCCCCCccceeecceeccCCCCCccccccCCCCCCCCCeEEEEEecCCcEEEEEe---------CC--eEEEEECC
Q 001477 801 WQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS---------GG--KVSLFNMM 869 (1071)
Q Consensus 801 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~v~~s~d~~~la~~~---------dg--~i~vwd~~ 869 (1071)
+.+..... ...+...+...|.. .+ .-.+++++.+..|.++++.. || .+++|-..
T Consensus 374 l~td~~i~------~~~v~~~n~~~~~~--------n~-~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n 438 (792)
T KOG1963|consen 374 LYTDSTIY------KLQVCDENYSDGDV--------NI-QVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYN 438 (792)
T ss_pred ccccceee------eEEEEeecccCCcc--------ee-EEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEc
Confidence 76543311 11111122222221 12 56688999999999999973 23 37888765
Q ss_pred C----CeEEEEE-eCCCCCeEEEEEcCCCCC-EEEEEeCCCeEEEEEccCC----------eEEEEecCcCCCeeEEEEc
Q 001477 870 T----FKVMTMF-MSPPPAATFLAFHPQDNN-IIAIGMEDSSVQIYNVRVD----------EVKTKLKGHQNRITGLAFS 933 (1071)
Q Consensus 870 ~----~~~~~~~-~~~~~~i~~l~~sp~~~~-~la~g~~dg~v~vwd~~~~----------~~~~~l~~h~~~v~~l~~s 933 (1071)
. ..+...+ ..|...+.+.++.+.-.. ..++++.||.++||-+.+. .+...-..|..++++++|+
T Consensus 439 ~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs 518 (792)
T KOG1963|consen 439 PNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFS 518 (792)
T ss_pred CCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhc
Confidence 4 3333333 346666555555542333 8899999999999998432 2333333488999999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCC-ceeeeeeecCCCCCCCCCCCceEEEEc---cCCCEEEEEECCeEEEEeC
Q 001477 934 PTLNALVSSGADAQLCMWSIDKW-EKLKSRFIQAPAGRQSPLVGETKVQFH---NDQTHLLVVHESQISVYDS 1002 (1071)
Q Consensus 934 ~d~~~l~s~~~d~~v~vWd~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s---~dg~~l~~~~d~~i~vwd~ 1002 (1071)
.||..| +++.|++|.+||..+. +....... .+ .++..+.|. +....+..+..+.+.+|++
T Consensus 519 ~dGsll-a~s~~~~Itiwd~~~~~~l~~~~~~---~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~WNl 582 (792)
T KOG1963|consen 519 QDGSLL-AVSFDDTITIWDYDTKNELLCTEGS---RN-----WPIAELLFTAQTQNDGALVHATQQRLSVWNL 582 (792)
T ss_pred CCCcEE-EEecCCEEEEecCCChhhhhccccc---cc-----cchHhHhhhcccccccceeeccCceEehHhh
Confidence 999655 4667889999999883 22211111 11 222333332 2222333456778889998
No 124
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.92 E-value=4.7e-23 Score=195.60 Aligned_cols=300 Identities=16% Similarity=0.220 Sum_probs=228.8
Q ss_pred CCCCeEEEEeecCCCeEEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeEEEECC-CCCEE
Q 001477 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP-DGLML 423 (1071)
Q Consensus 345 h~~~V~~~~fsp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~sp-d~~~l 423 (1071)
|.+.|+++...|...+++++|+.||.|.+||++.........+ +- ...|. .....-.+|.-.|..+.|-| |.-.+
T Consensus 42 HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~l-i~-k~~c~--v~~~h~~~Hky~iss~~WyP~DtGmF 117 (397)
T KOG4283|consen 42 HGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGL-IA-KHKCI--VAKQHENGHKYAISSAIWYPIDTGMF 117 (397)
T ss_pred CCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccc-ee-heeee--ccccCCccceeeeeeeEEeeecCcee
Confidence 8899999999997666899999999999999986542211000 00 00111 11122468999999999999 66678
Q ss_pred EEEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCC-ceEEEEEeCCCcEEEEEccCCceeEEecCCCCCeEE
Q 001477 424 GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNK-QLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYS 502 (1071)
Q Consensus 424 a~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~ 502 (1071)
.+++.|.++++||.++-+... .+ .-.+.|.+-++||-.. ..++++|..|-.|++.|+.+|...+++.||.+.|.+
T Consensus 118 tssSFDhtlKVWDtnTlQ~a~---~F-~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vla 193 (397)
T KOG4283|consen 118 TSSSFDHTLKVWDTNTLQEAV---DF-KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLA 193 (397)
T ss_pred ecccccceEEEeecccceeeE---Ee-ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEE
Confidence 888999999999999865443 33 3456788888988654 447888888999999999999999999999999999
Q ss_pred EEecccCCccEEEEEecCCeEEEEEcCCC-ceeEEe--------------cCCCCcEEEEEEccCCCEEEEeccCCCCCC
Q 001477 503 VCPHHKESIQFIFSTAIDGKIKAWLYDYL-GSRVDY--------------DAPGNWCTMMAYSADGTRLFSCGTSKEGES 567 (1071)
Q Consensus 503 i~~~~~~~~~~l~s~~~d~~i~vwd~~~~-~~~~~~--------------~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~ 567 (1071)
+.|+|..+ -.|++|+.||.|++||++.. .+...+ ..|.+.+..++|+.++.++++++. +.
T Consensus 194 V~Wsp~~e-~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gt----d~ 268 (397)
T KOG4283|consen 194 VEWSPSSE-WVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGT----DD 268 (397)
T ss_pred EEeccCce-eEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccC----cc
Confidence 99999865 78999999999999999865 333222 345668999999999999999986 77
Q ss_pred eEEEEeCCCCceeEEeec---ccc---cceeEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEc
Q 001477 568 HLVEWNESEGAIKRTYSG---FRK---RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFN 641 (1071)
Q Consensus 568 ~i~iwd~~~~~~~~~~~~---~~~---~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s 641 (1071)
.+++|+...|+....-.+ +.. ..+. +. +.+...++.--.++.+.++++-.+..+..+..|. ..+.|.++.
T Consensus 269 r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~--k~i~c~~~~ 344 (397)
T KOG4283|consen 269 RIRVWNMESGRNTLREFGPIIHNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHL--KRINCAAYR 344 (397)
T ss_pred ceEEeecccCcccccccccccccccccceEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEeeeccc--ceeeEEeec
Confidence 799999988763221111 111 0122 22 3444555555567899999999999999998874 478999999
Q ss_pred CCCCEEEEEeCCCcEEEEEc
Q 001477 642 KEGSLLAVTTSDNGIKILAN 661 (1071)
Q Consensus 642 ~~~~~l~~~~~dg~v~iw~~ 661 (1071)
|+=+...+|..|+.+..|-.
T Consensus 345 ~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 345 PDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred CchhhhhccccCCccccccc
Confidence 99999999999999999975
No 125
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=9.6e-22 Score=215.44 Aligned_cols=510 Identities=14% Similarity=0.175 Sum_probs=326.8
Q ss_pred EEEECCCCCEEEEEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCc-eEEEEEeCCCcEEEEEccCCceeE
Q 001477 413 RCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQ-LCIVTCGDDKMIKVWDVVAGRKQY 491 (1071)
Q Consensus 413 ~~~~spd~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~-~~l~s~~~d~~i~iwd~~~~~~~~ 491 (1071)
.-.||+|+++++... +..|.||...++.++. .+.+|..++..+.+.|.... .++.+++.||.|++||...+..+.
T Consensus 21 ~avfSnD~k~l~~~~-~~~V~VyS~~Tg~~i~---~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llk 96 (792)
T KOG1963|consen 21 PAVFSNDAKFLFLCT-GNFVKVYSTATGECIT---SLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLK 96 (792)
T ss_pred ccccccCCcEEEEee-CCEEEEEecchHhhhh---hcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEE
Confidence 346899999988774 5579999999999887 88899999999999887763 477899999999999999999998
Q ss_pred EecCCCCCeEEEEecccC--CccEEEEEecCCeEEE---EEcCCCceeE---EecC-------CCCcEEEEEEccCCCEE
Q 001477 492 TFEGHEAPVYSVCPHHKE--SIQFIFSTAIDGKIKA---WLYDYLGSRV---DYDA-------PGNWCTMMAYSADGTRL 556 (1071)
Q Consensus 492 ~~~~h~~~v~~i~~~~~~--~~~~l~s~~~d~~i~v---wd~~~~~~~~---~~~~-------~~~~i~~~~~s~~~~~l 556 (1071)
++..+ .++..+.+.|.. ....+..+..|..+.. -++....... +... ....-.++.+++.|.+.
T Consensus 97 t~~~~-~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~ 175 (792)
T KOG1963|consen 97 TFDNN-LPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFK 175 (792)
T ss_pred EEecC-CceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEE
Confidence 88643 344444332210 0011112222221111 0111000000 0000 01113577888888887
Q ss_pred EEeccCCCCCCeEEEEeCCCCcee---EEeecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCC--CceeEEEecCCC
Q 001477 557 FSCGTSKEGESHLVEWNESEGAIK---RTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN--MNMLTTVDADGG 631 (1071)
Q Consensus 557 ~~~~~~~d~~~~i~iwd~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~ 631 (1071)
..+. +..+.+|+..++... +....++...+.+.+++|++++++++..||.|.+|.--. ......-..|.|
T Consensus 176 ~i~~-----~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH 250 (792)
T KOG1963|consen 176 GIVH-----MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWH 250 (792)
T ss_pred EEEE-----eeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEec
Confidence 7664 455899998875511 111222332578999999999999999999999996443 222222223444
Q ss_pred CCCcceEEEcCCCCEEEEEeCCCcEEEEEcCChhhhhhhhcCCccccccCCCCCCCCCCccccccCCCCccccccCCCCC
Q 001477 632 LPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLE 711 (1071)
Q Consensus 632 ~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 711 (1071)
...|.+++|+++|.+|++|+..|.+.+|.+.++++ ++
T Consensus 251 ~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~k---qf---------------------------------------- 287 (792)
T KOG1963|consen 251 HDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKK---QF---------------------------------------- 287 (792)
T ss_pred ccccceeEEecCCceEeecccceEEEEEeecCCCc---cc----------------------------------------
Confidence 56899999999999999999999999999988731 11
Q ss_pred CCCCCCCcccccccCCCCcccccccccccccccCccceeccCCCCCcccceeeecCCCcCCCceEEEEEecccchhhhcc
Q 001477 712 RPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALA 791 (1071)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~~~~ 791 (1071)
+|. -.+.|..+.+|||+.......
T Consensus 288 ------------------------------------------------------LPR--Lgs~I~~i~vS~ds~~~sl~~ 311 (792)
T KOG1963|consen 288 ------------------------------------------------------LPR--LGSPILHIVVSPDSDLYSLVL 311 (792)
T ss_pred ------------------------------------------------------ccc--cCCeeEEEEEcCCCCeEEEEe
Confidence 011 235688999999999988888
Q ss_pred ccceeEEEecccccCCCCCccceeecceeccCCCCCccccccCCCCCCCCCeEEEEEecCCcEEEEEe-CCeEEEEECCC
Q 001477 792 SNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMT 870 (1071)
Q Consensus 792 ~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~v~~s~d~~~la~~~-dg~i~vwd~~~ 870 (1071)
.|+.|.+-....-+. .. ++.-..+.+... +. .. .+-.+.++++|.-+.++-.+ .|.|.+||+-+
T Consensus 312 ~DNqI~li~~~dl~~------k~--tIsgi~~~~~~~-----k~-~~-~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~t 376 (792)
T KOG1963|consen 312 EDNQIHLIKASDLEI------KS--TISGIKPPTPST-----KT-RP-QSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYT 376 (792)
T ss_pred cCceEEEEeccchhh------hh--hccCccCCCccc-----cc-cc-cccceeEEEcCCCCceeecCCCceEEEEeccc
Confidence 899998875432110 00 000000000000 00 01 45567889999555555554 89999999988
Q ss_pred CeEEEEEeC-----CCC------CeEEEEEcCCCCCEEEEEe--------CC--CeEEEEEccCCe----EEEE-ecCcC
Q 001477 871 FKVMTMFMS-----PPP------AATFLAFHPQDNNIIAIGM--------ED--SSVQIYNVRVDE----VKTK-LKGHQ 924 (1071)
Q Consensus 871 ~~~~~~~~~-----~~~------~i~~l~~sp~~~~~la~g~--------~d--g~v~vwd~~~~~----~~~~-l~~h~ 924 (1071)
.+.+..+.. +.+ .+++++.+. .|.+++|+- .| -.+++|-..... +... -..|.
T Consensus 377 d~~i~~~~v~~~n~~~~~~n~~v~itav~~~~-~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~ 455 (792)
T KOG1963|consen 377 DSTIYKLQVCDENYSDGDVNIQVGITAVARSR-FGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHG 455 (792)
T ss_pred cceeeeEEEEeecccCCcceeEEeeeeehhhc-cceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCC
Confidence 766655531 222 478888888 699998864 23 357888766443 2222 34688
Q ss_pred CCeeEEEEcCC-C-CEEEEEeCCCcEEEEECCCCceeee-----eeecCCCCCCCCCCCceEEEEccCCCEEEEEECCeE
Q 001477 925 NRITGLAFSPT-L-NALVSSGADAQLCMWSIDKWEKLKS-----RFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQI 997 (1071)
Q Consensus 925 ~~v~~l~~s~d-~-~~l~s~~~d~~v~vWd~~~~~~~~~-----~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i 997 (1071)
..+...++.+- . ..++|+|.||.+++|-+...+.+.. .+.....-| ..+++.++|+.||..|+++.|+.|
T Consensus 456 ~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~---k~~i~a~~fs~dGslla~s~~~~I 532 (792)
T KOG1963|consen 456 NAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYH---KTPITALCFSQDGSLLAVSFDDTI 532 (792)
T ss_pred ceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccc---cCcccchhhcCCCcEEEEecCCEE
Confidence 77766666542 2 3899999999999999844332211 011111111 267899999999999999999999
Q ss_pred EEEeCCC-CceeecCCCCCCCCCeeEEEEec----CCcEEEEEeCCCeEEEEEcCCCeEEEE
Q 001477 998 SVYDSKL-ECSRSWSPKDALPAPISSAIYSC----DGLLVYAGFCDGAIGVFDAETLRFRCR 1054 (1071)
Q Consensus 998 ~vwd~~~-~~~~~~~~~~~h~~~v~~~~~s~----dg~~l~t~~~Dg~i~vwd~~~~~~~~~ 1054 (1071)
.+||... +......... ..++..++|.. ++. +.......+.+|++-++.+...
T Consensus 533 tiwd~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~WNll~~~l~w~ 590 (792)
T KOG1963|consen 533 TIWDYDTKNELLCTEGSR--NWPIAELLFTAQTQNDGA--LVHATQQRLSVWNLLSMSLIWN 590 (792)
T ss_pred EEecCCChhhhhcccccc--ccchHhHhhhcccccccc--eeeccCceEehHhhhhhheecc
Confidence 9999943 3332222221 33444444432 333 2334578899999998888763
No 126
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=8.6e-23 Score=206.94 Aligned_cols=293 Identities=16% Similarity=0.215 Sum_probs=221.6
Q ss_pred CCeEEEEeCCCCceeEEeecccccceeEEEEeCCCCEEEEEe-CCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCC
Q 001477 566 ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEG 644 (1071)
Q Consensus 566 ~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 644 (1071)
...+.+||+++|....++++.....-.++..- .+.+++++. ....|.+|.+.......... --..+|.+++-+|+|
T Consensus 17 ~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~--v~Pg~v~al~s~n~G 93 (476)
T KOG0646|consen 17 PINCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYI--VLPGPVHALASSNLG 93 (476)
T ss_pred CcceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhhhc--ccccceeeeecCCCc
Confidence 45589999999999988887622111112111 235666655 55689999987655444111 112368999999999
Q ss_pred CEEEEEeCCCcEEEEEcCChhhhhhhhcCCccccccCCCCCCCCCCccccccCCCCccccccCCCCCCCCCCCCcccccc
Q 001477 645 SLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISS 724 (1071)
Q Consensus 645 ~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 724 (1071)
.+|+.|+..|.+++|.+.+| .++..+.+
T Consensus 94 ~~l~ag~i~g~lYlWelssG-~LL~v~~a--------------------------------------------------- 121 (476)
T KOG0646|consen 94 YFLLAGTISGNLYLWELSSG-ILLNVLSA--------------------------------------------------- 121 (476)
T ss_pred eEEEeecccCcEEEEEeccc-cHHHHHHh---------------------------------------------------
Confidence 99999999999999999999 66655433
Q ss_pred cCCCCcccccccccccccccCccceeccCCCCCcccceeeecCCCcCCCceEEEEEecccchhhhccccceeEEEecccc
Q 001477 725 LGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRT 804 (1071)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~~~~~dg~v~vw~~~~~ 804 (1071)
|...|+++.|+.||..+++++.||.|.+|.+..-
T Consensus 122 ----------------------------------------------HYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~l 155 (476)
T KOG0646|consen 122 ----------------------------------------------HYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDL 155 (476)
T ss_pred ----------------------------------------------hccceeEEEEeCCCcEEEecCCCccEEEEEEEee
Confidence 6678999999999999999999999999987531
Q ss_pred cCCCCCccceeecceeccCCCC--CccccccCCCCCCCCCeEEEEEecC--CcEEEEEe-CCeEEEEECCCCeEEEEEeC
Q 001477 805 ERNPSGKATANVAPQLWQPPSG--TLMTNDINESKPTEESAACIALSKN--DSYVMSAS-GGKVSLFNMMTFKVMTMFMS 879 (1071)
Q Consensus 805 ~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~h~~~~v~~v~~s~d--~~~la~~~-dg~i~vwd~~~~~~~~~~~~ 879 (1071)
.+.... ......+.. | .-+|+.+...+. ..+|++++ |.++++||+..+.++.++.
T Consensus 156 ----------------v~a~~~~~~~p~~~f~~--H-tlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~- 215 (476)
T KOG0646|consen 156 ----------------VSADNDHSVKPLHIFSD--H-TLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT- 215 (476)
T ss_pred ----------------cccccCCCccceeeecc--C-cceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-
Confidence 111111 111112333 7 899999988765 45888888 9999999999999988876
Q ss_pred CCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEccC----------------CeEEEEecCcCC--CeeEEEEcCCCCEEEE
Q 001477 880 PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV----------------DEVKTKLKGHQN--RITGLAFSPTLNALVS 941 (1071)
Q Consensus 880 ~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~----------------~~~~~~l~~h~~--~v~~l~~s~d~~~l~s 941 (1071)
....+++++.+| .++.+.+|+.+|.|.+.++.. +..+..+.||.+ +|+|++++-||.+|++
T Consensus 216 fp~si~av~lDp-ae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlS 294 (476)
T KOG0646|consen 216 FPSSIKAVALDP-AERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLS 294 (476)
T ss_pred cCCcceeEEEcc-cccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEe
Confidence 456799999999 999999999999999988753 234667889999 9999999999999999
Q ss_pred EeCCCcEEEEECCCCceeeeeeecCCCCCCCCCCCceEEEEccCCCE
Q 001477 942 SGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTH 988 (1071)
Q Consensus 942 ~~~d~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 988 (1071)
|+.||+|+|||+.+.+.++.... . .++|+.+.+.|-.+-
T Consensus 295 Gd~dg~VcvWdi~S~Q~iRtl~~--~------kgpVtnL~i~~~~~~ 333 (476)
T KOG0646|consen 295 GDEDGKVCVWDIYSKQCIRTLQT--S------KGPVTNLQINPLERG 333 (476)
T ss_pred eCCCCCEEEEecchHHHHHHHhh--h------ccccceeEeeccccc
Confidence 99999999999999776644221 1 166888888665433
No 127
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.91 E-value=8.3e-23 Score=216.56 Aligned_cols=281 Identities=17% Similarity=0.272 Sum_probs=224.1
Q ss_pred ceeEEeecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcce-EEEcC-CCCEEEEEeCCCc
Q 001477 578 AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPR-LRFNK-EGSLLAVTTSDNG 655 (1071)
Q Consensus 578 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~-~~~s~-~~~~l~~~~~dg~ 655 (1071)
++.+.+.+|.. .|..+++.+ +..++++|.||++++|+-..++.+......++...+.. +++.+ ++..+++|+.|++
T Consensus 5 ~ls~~l~gH~~-DVr~v~~~~-~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~ 82 (745)
T KOG0301|consen 5 KLSHELEGHKS-DVRAVAVTD-GVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTT 82 (745)
T ss_pred eeEEEeccCcc-chheeEecC-CeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccce
Confidence 45677888887 787777665 45789999999999999987776664444344444544 77775 5667999999999
Q ss_pred EEEEEcCChhhhhhhhcCCccccccCCCCCCCCCCccccccCCCCccccccCCCCCCCCCCCCcccccccCCCCcccccc
Q 001477 656 IKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVD 735 (1071)
Q Consensus 656 v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 735 (1071)
+.+|...+. ..+..+.+
T Consensus 83 i~v~~~~~~-~P~~~Lkg-------------------------------------------------------------- 99 (745)
T KOG0301|consen 83 IIVFKLSQA-EPLYTLKG-------------------------------------------------------------- 99 (745)
T ss_pred EEEEecCCC-Cchhhhhc--------------------------------------------------------------
Confidence 999998766 44444444
Q ss_pred cccccccccCccceeccCCCCCcccceeeecCCCcCCCceEEEEEecccchhhhccccceeEEEecccccCCCCCcccee
Q 001477 736 VKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATAN 815 (1071)
Q Consensus 736 ~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~ 815 (1071)
|.+.|.++....++. +++++.|.++++|....
T Consensus 100 -----------------------------------H~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~------------ 131 (745)
T KOG0301|consen 100 -----------------------------------HKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGE------------ 131 (745)
T ss_pred -----------------------------------cccceeeeecCCcCc-eEecccccceEEecchh------------
Confidence 556677777777777 89999999999995431
Q ss_pred ecceeccCCCCCccccccCCCCCCCCCeEEEEEecCCcEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCC
Q 001477 816 VAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDN 894 (1071)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~v~~s~d~~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~ 894 (1071)
+.. .+++ | ...|.+++.-|++ .+++|+ |.+|++|.- ++++++|.+|++.|..+++-+ ++
T Consensus 132 ------------l~~-~l~g--H-~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~-~~ 191 (745)
T KOG0301|consen 132 ------------LVY-SLQG--H-TASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLD-DS 191 (745)
T ss_pred ------------hhc-ccCC--c-chheeeeeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEec-CC
Confidence 111 1445 8 9999999999998 666777 999999985 789999999999999999998 54
Q ss_pred CEEEEEeCCCeEEEEEccCCeEEEEecCcCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeecCCCCCCCCC
Q 001477 895 NIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPL 974 (1071)
Q Consensus 895 ~~la~g~~dg~v~vwd~~~~~~~~~l~~h~~~v~~l~~s~d~~~l~s~~~d~~v~vWd~~~~~~~~~~~~~~~~~~~~~~ 974 (1071)
.+++++.||.|++|++ +|+++.+..||++-|.+++..+++..++|+|+|+++++|+.. ++.+ .+..+.
T Consensus 192 -~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q--~I~lPt------ 259 (745)
T KOG0301|consen 192 -HFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQ--VITLPT------ 259 (745)
T ss_pred -CeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEE--EEecCc------
Confidence 5678999999999998 888899999999999999988999999999999999999987 3332 232222
Q ss_pred CCceEEEEccCCCEEEEEECCeEEEEeCC
Q 001477 975 VGETKVQFHNDQTHLLVVHESQISVYDSK 1003 (1071)
Q Consensus 975 ~~v~~~~~s~dg~~l~~~~d~~i~vwd~~ 1003 (1071)
-.+.++.+-++|..++.++||.|+||...
T Consensus 260 tsiWsa~~L~NgDIvvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 260 TSIWSAKVLLNGDIVVGGSDGRVRVFTVD 288 (745)
T ss_pred cceEEEEEeeCCCEEEeccCceEEEEEec
Confidence 45889999999999888999999999973
No 128
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.91 E-value=3.9e-22 Score=209.16 Aligned_cols=273 Identities=12% Similarity=0.141 Sum_probs=204.5
Q ss_pred CeEEEEeecCCCeEEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeEEEECCCCCEEEEEe
Q 001477 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF 427 (1071)
Q Consensus 348 ~V~~~~fsp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~la~~~ 427 (1071)
.|..++|-|||..+++.+ +..+.|||+..|..+.. +++|++.|+|++||.||+.+|+|+
T Consensus 14 ci~d~afkPDGsqL~lAA--g~rlliyD~ndG~llqt-------------------LKgHKDtVycVAys~dGkrFASG~ 72 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA--GSRLLVYDTSDGTLLQP-------------------LKGHKDTVYCVAYAKDGKRFASGS 72 (1081)
T ss_pred chheeEECCCCceEEEec--CCEEEEEeCCCcccccc-------------------cccccceEEEEEEccCCceeccCC
Confidence 789999999998776654 56899999999988765 889999999999999999999999
Q ss_pred CCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccCCceeEEecCCCCCeEEEEecc
Q 001477 428 SKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHH 507 (1071)
Q Consensus 428 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~ 507 (1071)
.|..|.+|+-+-...++ ..|...|.||.|+|-.. .|++++-. ..-+|........+ . .....+.+.+|.
T Consensus 73 aDK~VI~W~~klEG~Lk-----YSH~D~IQCMsFNP~~h--~LasCsLs-dFglWS~~qK~V~K-~-kss~R~~~CsWt- 141 (1081)
T KOG1538|consen 73 ADKSVIIWTSKLEGILK-----YSHNDAIQCMSFNPITH--QLASCSLS-DFGLWSPEQKSVSK-H-KSSSRIICCSWT- 141 (1081)
T ss_pred CceeEEEecccccceee-----eccCCeeeEeecCchHH--Hhhhcchh-hccccChhhhhHHh-h-hhheeEEEeeec-
Confidence 99999999976544332 26999999999999988 68888743 56789865543321 1 124556677776
Q ss_pred cCCccEEEEEecCCeEEEEEcCCCceeEEec---CCCCcEEEEEEccCCC-----EEEEeccCCCCCCeEEEEeCCCCce
Q 001477 508 KESIQFIFSTAIDGKIKAWLYDYLGSRVDYD---APGNWCTMMAYSADGT-----RLFSCGTSKEGESHLVEWNESEGAI 579 (1071)
Q Consensus 508 ~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~---~~~~~i~~~~~s~~~~-----~l~~~~~~~d~~~~i~iwd~~~~~~ 579 (1071)
.||++++.|-.||+|.+-+-. ++....+. +.+.+|.+++|+|... .+++... ..++..+.+. |+.
T Consensus 142 -nDGqylalG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW----~qTLSFy~Ls-G~~ 214 (1081)
T KOG1538|consen 142 -NDGQYLALGMFNGTISIRNKN-GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADW----GQTLSFYQLS-GKQ 214 (1081)
T ss_pred -CCCcEEEEeccCceEEeecCC-CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEec----cceeEEEEec-cee
Confidence 466999999999999987543 34433333 3566999999999642 3333322 3345555544 444
Q ss_pred eEEeecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEE
Q 001477 580 KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKIL 659 (1071)
Q Consensus 580 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw 659 (1071)
+..-..-.- .-.|+.+.++|.+++.||.|+.+.+|.. .|-.+.++.... ..|+.++..|+++.++.|+.||+|..|
T Consensus 215 Igk~r~L~F-dP~CisYf~NGEy~LiGGsdk~L~~fTR-~GvrLGTvg~~D--~WIWtV~~~PNsQ~v~~GCqDGTiACy 290 (1081)
T KOG1538|consen 215 IGKDRALNF-DPCCISYFTNGEYILLGGSDKQLSLFTR-DGVRLGTVGEQD--SWIWTVQAKPNSQYVVVGCQDGTIACY 290 (1081)
T ss_pred ecccccCCC-CchhheeccCCcEEEEccCCCceEEEee-cCeEEeeccccc--eeEEEEEEccCCceEEEEEccCeeehh
Confidence 432222111 3467889999999999999999999964 466666665433 489999999999999999999999999
Q ss_pred EcCC
Q 001477 660 ANSD 663 (1071)
Q Consensus 660 ~~~~ 663 (1071)
++..
T Consensus 291 Nl~f 294 (1081)
T KOG1538|consen 291 NLIF 294 (1081)
T ss_pred hhHH
Confidence 8643
No 129
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.9e-22 Score=193.40 Aligned_cols=294 Identities=12% Similarity=0.180 Sum_probs=221.2
Q ss_pred ceeeEEeecCCCCeEEEEeecCCCeEEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeEEE
Q 001477 336 TKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCV 415 (1071)
Q Consensus 336 ~~~~~~~~~h~~~V~~~~fsp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~ 415 (1071)
|.+...++++.. -.|+.||+.|. +||+|..||.|.|||+.+...- .++.+|..+|++++
T Consensus 14 PEel~~tld~~~-a~~~~Fs~~G~-~lAvGc~nG~vvI~D~~T~~ia-------------------r~lsaH~~pi~sl~ 72 (405)
T KOG1273|consen 14 PEELTHTLDNPL-AECCQFSRWGD-YLAVGCANGRVVIYDFDTFRIA-------------------RMLSAHVRPITSLC 72 (405)
T ss_pred hHhhceeccCCc-cceEEeccCcc-eeeeeccCCcEEEEEccccchh-------------------hhhhccccceeEEE
Confidence 445566677665 88999999997 8999999999999999886532 24789999999999
Q ss_pred ECCCCCEEEEEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccCCceeEEec-
Q 001477 416 WGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE- 494 (1071)
Q Consensus 416 ~spd~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~- 494 (1071)
||+||+.|+++|.|..|.+||+..|..+... ....+|+.+.|.|...+..+++- .+..-.+-++..++.. .+.
T Consensus 73 WS~dgr~LltsS~D~si~lwDl~~gs~l~ri----rf~spv~~~q~hp~k~n~~va~~-~~~sp~vi~~s~~~h~-~Lp~ 146 (405)
T KOG1273|consen 73 WSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI----RFDSPVWGAQWHPRKRNKCVATI-MEESPVVIDFSDPKHS-VLPK 146 (405)
T ss_pred ecCCCCEeeeecCCceeEEEeccCCCceeEE----EccCccceeeeccccCCeEEEEE-ecCCcEEEEecCCcee-eccC
Confidence 9999999999999999999999999876633 25679999999998776344443 3444555555442211 111
Q ss_pred CCCCCeE----EEEecccCCccEEEEEecCCeEEEEEcCCCceeEEecCCC-CcEEEEEEccCCCEEEEeccCCCCCCeE
Q 001477 495 GHEAPVY----SVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPG-NWCTMMAYSADGTRLFSCGTSKEGESHL 569 (1071)
Q Consensus 495 ~h~~~v~----~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~~~~d~~~~i 569 (1071)
...+..+ +..|. ..|+++++|...|.+.++|..+.+.+..++... ..|..+.++..|+.++..+. |..|
T Consensus 147 d~d~dln~sas~~~fd--r~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNts----DRvI 220 (405)
T KOG1273|consen 147 DDDGDLNSSASHGVFD--RRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTS----DRVI 220 (405)
T ss_pred CCcccccccccccccc--CCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecC----CceE
Confidence 1111111 11243 456999999999999999999998887776665 78999999999999999875 8889
Q ss_pred EEEeCCC-------Cce--eEEeec-ccccceeEEEEeCCCCEEEEEe-CCCcEEEEeCCCCceeEEEecCCCCCCcceE
Q 001477 570 VEWNESE-------GAI--KRTYSG-FRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRL 638 (1071)
Q Consensus 570 ~iwd~~~-------~~~--~~~~~~-~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~ 638 (1071)
+.|+++. +++ .+.+.. -....-.+++|+.+|.++++++ .-..++||.-..|.+++.+.+..+. ....+
T Consensus 221 R~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE-~l~DV 299 (405)
T KOG1273|consen 221 RTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGE-ELLDV 299 (405)
T ss_pred EEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchh-heeec
Confidence 9999862 111 111111 1112456789999999999877 5578999999999999999876643 56789
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEcCCh
Q 001477 639 RFNKEGSLLAVTTSDNGIKILANSDG 664 (1071)
Q Consensus 639 ~~s~~~~~l~~~~~dg~v~iw~~~~~ 664 (1071)
.|+|-...+++- ..|.+++|.....
T Consensus 300 ~whp~rp~i~si-~sg~v~iw~~~~~ 324 (405)
T KOG1273|consen 300 NWHPVRPIIASI-ASGVVYIWAVVQV 324 (405)
T ss_pred ccccceeeeeec-cCCceEEEEeecc
Confidence 999988777776 7889999987543
No 130
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.1e-19 Score=199.63 Aligned_cols=246 Identities=14% Similarity=0.181 Sum_probs=212.0
Q ss_pred ccCCCCeeEEEECCCCCEEEEEeCCCeEEEEEecCC-CccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEE
Q 001477 405 NDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPT-GELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1071)
Q Consensus 405 ~~h~~~v~~~~~spd~~~la~~~~dg~i~iwd~~~~-~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd 483 (1071)
..|...-+.++|.|+|..|++++.||.|++|+.... +... .+..+...|.+++-. +. .|++|+.+++|.++.
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~---ti~~~g~~v~~ia~~--s~--~f~~~s~~~tv~~y~ 82 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPE---TIDISGELVSSIACY--SN--HFLTGSEQNTVLRYK 82 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCc---hhhccCceeEEEeec--cc--ceEEeeccceEEEee
Confidence 468899999999999999999999999999998776 3332 333377778877764 44 699999999999999
Q ss_pred ccCCceeEEecCCCCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCceeEEecCCCCcEEEEEEccCCCEEEEeccCC
Q 001477 484 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK 563 (1071)
Q Consensus 484 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~ 563 (1071)
..+++.-..+...+-++..++++. +|.+++.||.|-.|++-++........+.+|..+|.++.|+|.+++|++.+.
T Consensus 83 fps~~~~~iL~Rftlp~r~~~v~g--~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~-- 158 (933)
T KOG1274|consen 83 FPSGEEDTILARFTLPIRDLAVSG--SGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSC-- 158 (933)
T ss_pred CCCCCccceeeeeeccceEEEEec--CCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEec--
Confidence 998876655656678899999985 5589999999999999999999999999999999999999999999998874
Q ss_pred CCCCeEEEEeCCCCceeEEeeccc-------ccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcc
Q 001477 564 EGESHLVEWNESEGAIKRTYSGFR-------KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASP 636 (1071)
Q Consensus 564 d~~~~i~iwd~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 636 (1071)
+|.|++||+.++.+..++.+-. ...+..++|+|+|..++..+.|+.|++|+..+.+....+........+.
T Consensus 159 --dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~ 236 (933)
T KOG1274|consen 159 --DGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFS 236 (933)
T ss_pred --CceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceE
Confidence 8899999999988777665432 2246679999999999999999999999999999999987665555589
Q ss_pred eEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 001477 637 RLRFNKEGSLLAVTTSDNGIKILANSD 663 (1071)
Q Consensus 637 ~~~~s~~~~~l~~~~~dg~v~iw~~~~ 663 (1071)
++.|+|+|.+||+++.||.|.|||+.+
T Consensus 237 ~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 237 DLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred EEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 999999999999999999999999986
No 131
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=3.1e-22 Score=192.52 Aligned_cols=241 Identities=16% Similarity=0.137 Sum_probs=188.7
Q ss_pred CCCCeeEEEECCCCCEEEEEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccC
Q 001477 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA 486 (1071)
Q Consensus 407 h~~~v~~~~~spd~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~ 486 (1071)
....|+.+.|+|.+..|++++.||++++||+....... .+ .|..++.+++|.++.. +++|+-||.|+.+|+.+
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~---~~-~~~~plL~c~F~d~~~---~~~G~~dg~vr~~Dln~ 84 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKL---KF-KHGAPLLDCAFADEST---IVTGGLDGQVRRYDLNT 84 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhh---he-ecCCceeeeeccCCce---EEEeccCceEEEEEecC
Confidence 46789999999999999999999999999999874433 22 5899999999988654 89999999999999988
Q ss_pred CceeEEecCCCCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCceeEEecCCCCcEEEEEEccCCCEEEEeccCCCCC
Q 001477 487 GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGE 566 (1071)
Q Consensus 487 ~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~ 566 (1071)
+... .+..|..+|.|+...+.. ..+++||.|++|++||.+.......+.. ...|.++..+ |+.|++++. +
T Consensus 85 ~~~~-~igth~~~i~ci~~~~~~--~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~~~v~--g~~LvVg~~----~ 154 (323)
T KOG1036|consen 85 GNED-QIGTHDEGIRCIEYSYEV--GCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYCMDVS--GNRLVVGTS----D 154 (323)
T ss_pred Ccce-eeccCCCceEEEEeeccC--CeEEEcccCccEEEEecccccccccccc-CceEEEEecc--CCEEEEeec----C
Confidence 8754 445699999999998755 6899999999999999987444444433 3377776654 567777664 7
Q ss_pred CeEEEEeCCCCceeE-EeecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCC----ceeEEEecCC-------CCCC
Q 001477 567 SHLVEWNESEGAIKR-TYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM----NMLTTVDADG-------GLPA 634 (1071)
Q Consensus 567 ~~i~iwd~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~-------~~~~ 634 (1071)
..+.+||+++..... .....-.-.++++++-|++.-+++++-||.|.+=.++.. +....+..|. -.-+
T Consensus 155 r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yP 234 (323)
T KOG1036|consen 155 RKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYP 234 (323)
T ss_pred ceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEE
Confidence 789999999765433 222222236899999999999999999999988666654 3333343332 1246
Q ss_pred cceEEEcCCCCEEEEEeCCCcEEEEEcCCh
Q 001477 635 SPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1071)
Q Consensus 635 v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~ 664 (1071)
|++++|+|-...+++|+.||.|.+||..+.
T Consensus 235 VNai~Fhp~~~tfaTgGsDG~V~~Wd~~~r 264 (323)
T KOG1036|consen 235 VNAIAFHPIHGTFATGGSDGIVNIWDLFNR 264 (323)
T ss_pred eceeEeccccceEEecCCCceEEEccCcch
Confidence 899999999889999999999999999877
No 132
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=3.2e-23 Score=191.85 Aligned_cols=252 Identities=17% Similarity=0.254 Sum_probs=200.5
Q ss_pred CCCCeEEEEeecCCCeEEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeEEEECC--CCCE
Q 001477 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP--DGLM 422 (1071)
Q Consensus 345 h~~~V~~~~fsp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~sp--d~~~ 422 (1071)
|.+-|-.+...=-|+ .||+++.|++|+|+.+....... ....|.||.++|+.++|.. -|.+
T Consensus 10 H~D~IHda~lDyygk-rlATcsSD~tVkIf~v~~n~~s~----------------ll~~L~Gh~GPVwqv~wahPk~G~i 72 (299)
T KOG1332|consen 10 HEDMIHDAQLDYYGK-RLATCSSDGTVKIFEVRNNGQSK----------------LLAELTGHSGPVWKVAWAHPKFGTI 72 (299)
T ss_pred hhhhhhHhhhhhhcc-eeeeecCCccEEEEEEcCCCCce----------------eeeEecCCCCCeeEEeecccccCcE
Confidence 677777777777787 58999999999999998765311 1112789999999999986 7999
Q ss_pred EEEEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccCC-c--eeEEecCCCCC
Q 001477 423 LGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG-R--KQYTFEGHEAP 499 (1071)
Q Consensus 423 la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~--~~~~~~~h~~~ 499 (1071)
||+++.||.|.||.-.++ ..........|...|++++|.|.+-.+.|+.++.||.|.+.+.++. . .......|.-.
T Consensus 73 LAScsYDgkVIiWke~~g-~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~G 151 (299)
T KOG1332|consen 73 LASCSYDGKVIIWKEENG-RWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIG 151 (299)
T ss_pred eeEeecCceEEEEecCCC-chhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccc
Confidence 999999999999998887 4444456778999999999999988889999999999999988754 2 22345579999
Q ss_pred eEEEEecccCC-c-----------cEEEEEecCCeEEEEEcCCCcee--EEecCCCCcEEEEEEccCC----CEEEEecc
Q 001477 500 VYSVCPHHKES-I-----------QFIFSTAIDGKIKAWLYDYLGSR--VDYDAPGNWCTMMAYSADG----TRLFSCGT 561 (1071)
Q Consensus 500 v~~i~~~~~~~-~-----------~~l~s~~~d~~i~vwd~~~~~~~--~~~~~~~~~i~~~~~s~~~----~~l~~~~~ 561 (1071)
|++++|.|..- | ..|++|+.|+.|++|+.++.+-. ..+..|...|+.++|.|.- .++++|+.
T Consensus 152 vnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~Sq 231 (299)
T KOG1332|consen 152 VNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQ 231 (299)
T ss_pred cceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecC
Confidence 99999988621 1 56999999999999999876432 3578899999999999964 46888875
Q ss_pred CCCCCCeEEEEeCCCC--ce-eEEeecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q 001477 562 SKEGESHLVEWNESEG--AI-KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN 619 (1071)
Q Consensus 562 ~~d~~~~i~iwd~~~~--~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 619 (1071)
|+++.||-.... .- ...+..... .+..+.|+..|+.|+.++.|+.+.+|.-..
T Consensus 232 ----Dg~viIwt~~~e~e~wk~tll~~f~~-~~w~vSWS~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 232 ----DGTVIIWTKDEEYEPWKKTLLEEFPD-VVWRVSWSLSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred ----CCcEEEEEecCccCcccccccccCCc-ceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence 888999976522 11 112222233 789999999999999999999999997653
No 133
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.91 E-value=7.6e-23 Score=207.29 Aligned_cols=252 Identities=17% Similarity=0.264 Sum_probs=204.0
Q ss_pred ccCCCCeeEEEECCCC-CEEEEEeCCCeEEEEEecCCCcc-------ceeeEeecccCCEEEEEEecCCCceEEEEEeCC
Q 001477 405 NDAAISVNRCVWGPDG-LMLGVAFSKHIVHLYTYNPTGEL-------RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD 476 (1071)
Q Consensus 405 ~~h~~~v~~~~~spd~-~~la~~~~dg~i~iwd~~~~~~~-------~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d 476 (1071)
..|.+.|+.+.+-|.. ..+|+.+..+.|.|||...-... +....+.+|.+.-..++|++.... .+++++.|
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g-~Lls~~~d 199 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEG-TLLSGSDD 199 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccce-eEeeccCC
Confidence 4589999999999954 56777888999999998753222 223368899998889999998776 79999999
Q ss_pred CcEEEEEccCCc-------eeEEecCCCCCeEEEEecccCCccEEEEEecCCeEEEEEcC--CCceeEEecCCCCcEEEE
Q 001477 477 KMIKVWDVVAGR-------KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD--YLGSRVDYDAPGNWCTMM 547 (1071)
Q Consensus 477 ~~i~iwd~~~~~-------~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~--~~~~~~~~~~~~~~i~~~ 547 (1071)
++|++||+.... +...+.+|...|..++|++... +.+++++.|+.+.+||++ +.+.......|...+.|+
T Consensus 200 ~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~-~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~ 278 (422)
T KOG0264|consen 200 HTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHE-DLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCV 278 (422)
T ss_pred CcEEEEeccccccCCccccceEEeecCCcceehhhccccch-hhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEE
Confidence 999999997532 3457889999999999999754 799999999999999999 455566778899999999
Q ss_pred EEccCCCEE-EEeccCCCCCCeEEEEeCCCC-ceeEEeecccccceeEEEEeCCC-CEEEEEeCCCcEEEEeCCCCcee-
Q 001477 548 AYSADGTRL-FSCGTSKEGESHLVEWNESEG-AIKRTYSGFRKRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDNMNML- 623 (1071)
Q Consensus 548 ~~s~~~~~l-~~~~~~~d~~~~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~- 623 (1071)
+|+|-+.++ ++++. |++|.+||+++- +++.++.+|.+ .|..+.|+|.. ..|++++.|+.+.+||+..-...
T Consensus 279 ~fnp~~~~ilAT~S~----D~tV~LwDlRnL~~~lh~~e~H~d-ev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq 353 (422)
T KOG0264|consen 279 AFNPFNEFILATGSA----DKTVALWDLRNLNKPLHTFEGHED-EVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQ 353 (422)
T ss_pred EeCCCCCceEEeccC----CCcEEEeechhcccCceeccCCCc-ceEEEEeCCCCCceeEecccCCcEEEEecccccccc
Confidence 999966554 55554 888999999974 57788999988 89999999987 45667889999999999752221
Q ss_pred -----------EEEecCCCCCCcceEEEcCCCC-EEEEEeCCCcEEEEEcCC
Q 001477 624 -----------TTVDADGGLPASPRLRFNKEGS-LLAVTTSDNGIKILANSD 663 (1071)
Q Consensus 624 -----------~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~v~iw~~~~ 663 (1071)
..+...+|...|..+.|+|+.. .|++.++|+.+.||....
T Consensus 354 ~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 354 SPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred ChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 2345556777899999999655 678889999999998764
No 134
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.91 E-value=2.2e-22 Score=203.12 Aligned_cols=301 Identities=15% Similarity=0.215 Sum_probs=226.6
Q ss_pred eEEeec-CCCCeEEEEeecCCC-eEEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeEEEE
Q 001477 339 VVRTLN-QGSNVMSMDFHPQQQ-TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW 416 (1071)
Q Consensus 339 ~~~~~~-h~~~V~~~~fsp~g~-~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~ 416 (1071)
...... +...|++++|+|... .++|+|+..|+|-+||+.+.+......+ ++..|+.+|.++.|
T Consensus 178 ~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~---------------~f~~hs~~Vs~l~F 242 (498)
T KOG4328|consen 178 ILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVY---------------LFTPHSGPVSGLKF 242 (498)
T ss_pred ecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceE---------------EeccCCccccceEe
Confidence 333344 678999999999876 7999999999999999975444332111 26789999999999
Q ss_pred CC-CCCEEEEEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccCCce-eEEec
Q 001477 417 GP-DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK-QYTFE 494 (1071)
Q Consensus 417 sp-d~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~ 494 (1071)
+| +-..+.+.|.||+|++-|++++..- ....+......+..+.|+.+.. .++.+..=|...+||.+++.. ...+.
T Consensus 243 ~P~n~s~i~ssSyDGtiR~~D~~~~i~e-~v~s~~~d~~~fs~~d~~~e~~--~vl~~~~~G~f~~iD~R~~~s~~~~~~ 319 (498)
T KOG4328|consen 243 SPANTSQIYSSSYDGTIRLQDFEGNISE-EVLSLDTDNIWFSSLDFSAESR--SVLFGDNVGNFNVIDLRTDGSEYENLR 319 (498)
T ss_pred cCCChhheeeeccCceeeeeeecchhhH-HHhhcCccceeeeeccccCCCc--cEEEeecccceEEEEeecCCccchhhh
Confidence 99 4568889999999999999875422 2223323445678899998887 677787778999999998765 55667
Q ss_pred CCCCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCcee----EEecCCCCcEEEEEEccCCCEEEEeccCCCCCCeEE
Q 001477 495 GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR----VDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLV 570 (1071)
Q Consensus 495 ~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~----~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~ 570 (1071)
-|...|.+++++|..+ .++++++.|++.++||++..... +....|...|.+..|||++-.|++.+. |..|+
T Consensus 320 lh~kKI~sv~~NP~~p-~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~----D~~IR 394 (498)
T KOG4328|consen 320 LHKKKITSVALNPVCP-WFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQ----DNEIR 394 (498)
T ss_pred hhhcccceeecCCCCc-hheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeecc----CCceE
Confidence 7999999999999865 89999999999999999875443 344567889999999998888888775 78899
Q ss_pred EEeCC----CCceeEEeeccccc----ceeEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcC
Q 001477 571 EWNES----EGAIKRTYSGFRKR----SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK 642 (1071)
Q Consensus 571 iwd~~----~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 642 (1071)
|||.. .-.+..++...... ...-..|.|+.+++++|-.-..|-|+|-..++.+..+.......-..-..|+|
T Consensus 395 v~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP 474 (498)
T KOG4328|consen 395 VFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHP 474 (498)
T ss_pred EeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecc
Confidence 99983 33333333322110 23346799999999999988899999999999888765443322223457999
Q ss_pred CCCEEEE-EeCCCcEEEEEcC
Q 001477 643 EGSLLAV-TTSDNGIKILANS 662 (1071)
Q Consensus 643 ~~~~l~~-~~~dg~v~iw~~~ 662 (1071)
-+..+++ ++..|.|++|-.+
T Consensus 475 ~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 475 MRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred cccceeccCCccceEEEEecC
Confidence 7774544 4557889988654
No 135
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=2.1e-22 Score=203.35 Aligned_cols=288 Identities=12% Similarity=0.205 Sum_probs=232.4
Q ss_pred CCCeEEEEeecCCCeEEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeEEEECCCCC-EEE
Q 001477 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGL-MLG 424 (1071)
Q Consensus 346 ~~~V~~~~fsp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd~~-~la 424 (1071)
.++|+++.|+|..+ +|.+++.||+++||.+.......-.. +.--..+|.+.+|.|+|. .++
T Consensus 213 ~~~I~sv~FHp~~p-lllvaG~d~~lrifqvDGk~N~~lqS-----------------~~l~~fPi~~a~f~p~G~~~i~ 274 (514)
T KOG2055|consen 213 HGGITSVQFHPTAP-LLLVAGLDGTLRIFQVDGKVNPKLQS-----------------IHLEKFPIQKAEFAPNGHSVIF 274 (514)
T ss_pred cCCceEEEecCCCc-eEEEecCCCcEEEEEecCccChhhee-----------------eeeccCccceeeecCCCceEEE
Confidence 46899999999997 88899999999999997543221000 122356899999999999 899
Q ss_pred EEeCCCeEEEEEecCCCccceeeEeeccc-CCEEEEEEecCCCceEEEEEeCCCcEEEEEccCCceeEEecCCCCCeEEE
Q 001477 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHV-GGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSV 503 (1071)
Q Consensus 425 ~~~~dg~i~iwd~~~~~~~~~~~~~~~h~-~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i 503 (1071)
+++.....+.||+.+.+..+ ...+.++. ..+.....+++++ +|+..|..|.|.+....+++.+.+++ -.+.|..+
T Consensus 275 ~s~rrky~ysyDle~ak~~k-~~~~~g~e~~~~e~FeVShd~~--fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~ 350 (514)
T KOG2055|consen 275 TSGRRKYLYSYDLETAKVTK-LKPPYGVEEKSMERFEVSHDSN--FIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDF 350 (514)
T ss_pred ecccceEEEEeecccccccc-ccCCCCcccchhheeEecCCCC--eEEEcccCceEEeehhhhhhhhheee-eccEEeeE
Confidence 99999999999999876543 22334444 3577888999999 89999999999999999999998886 67889999
Q ss_pred EecccCCccEEEEEecCCeEEEEEcCCCceeEEecCCCC-cEEEEEEccCCCEEEEeccCCCCCCeEEEEeCCC------
Q 001477 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN-WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE------ 576 (1071)
Q Consensus 504 ~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~-~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~------ 576 (1071)
+|+. ++..|++.+.+|.|.+||++.......+...++ .-++++.++++.++++|+. .|.|.|||..+
T Consensus 351 ~fsS--dsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~----~GiVNIYd~~s~~~s~~ 424 (514)
T KOG2055|consen 351 TFSS--DSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSD----SGIVNIYDGNSCFASTN 424 (514)
T ss_pred EEec--CCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccC----cceEEEeccchhhccCC
Confidence 9985 458999999999999999999877776665443 4578889999999999985 78899999653
Q ss_pred CceeEEeecccccceeEEEEeCCCCEEEEEe--CCCcEEEEeCCCCceeEEEecC-CCCCCcceEEEcCCCCEEEEEeCC
Q 001477 577 GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG--DEFQIKFWDMDNMNMLTTVDAD-GGLPASPRLRFNKEGSLLAVTTSD 653 (1071)
Q Consensus 577 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d 653 (1071)
.+++..+..-.. .|+++.|+++.+.|+.+| .+..+++-.+.+......++.. .....|+|++|+|.+.++|.|..+
T Consensus 425 PkPik~~dNLtt-~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~ 503 (514)
T KOG2055|consen 425 PKPIKTVDNLTT-AITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEA 503 (514)
T ss_pred CCchhhhhhhhe-eeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCC
Confidence 456666665555 799999999999998877 5678999888876665555432 344678999999999999999999
Q ss_pred CcEEEEEcC
Q 001477 654 NGIKILANS 662 (1071)
Q Consensus 654 g~v~iw~~~ 662 (1071)
|.+.+|.+.
T Consensus 504 grv~l~kL~ 512 (514)
T KOG2055|consen 504 GRVHLFKLH 512 (514)
T ss_pred CceeeEeec
Confidence 999999863
No 136
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.9e-22 Score=204.49 Aligned_cols=225 Identities=13% Similarity=0.149 Sum_probs=193.5
Q ss_pred CCCCeeEEEECCCCCEEEEEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEcc-
Q 001477 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV- 485 (1071)
Q Consensus 407 h~~~v~~~~~spd~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~- 485 (1071)
-.++|.|++-+|+|.+|+.|+-.|.+++|.+.+|..+. .+.+|=..|+|+.|+-||. +|+|||.||.|.+|++.
T Consensus 80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~---v~~aHYQ~ITcL~fs~dgs--~iiTgskDg~V~vW~l~~ 154 (476)
T KOG0646|consen 80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLN---VLSAHYQSITCLKFSDDGS--HIITGSKDGAVLVWLLTD 154 (476)
T ss_pred cccceeeeecCCCceEEEeecccCcEEEEEeccccHHH---HHHhhccceeEEEEeCCCc--EEEecCCCccEEEEEEEe
Confidence 45689999999999999999999999999999999887 6789999999999999999 89999999999999864
Q ss_pred --------CCceeEEecCCCCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCceeEEecCCCCcEEEEEEccCCCEEE
Q 001477 486 --------AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLF 557 (1071)
Q Consensus 486 --------~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 557 (1071)
+-++++.|..|.-+|+.+...+.+...+++++|.|.++++||+..+.....+.. ...+.+++.+|-++.++
T Consensus 155 lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~f-p~si~av~lDpae~~~y 233 (476)
T KOG0646|consen 155 LVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITF-PSSIKAVALDPAERVVY 233 (476)
T ss_pred ecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEec-CCcceeEEEcccccEEE
Confidence 346788999999999999998876668999999999999999998877766553 45789999999999999
Q ss_pred EeccCCCCCCeEEEEeCCC----------------CceeEEeecccc-cceeEEEEeCCCCEEEEEeCCCcEEEEeCCCC
Q 001477 558 SCGTSKEGESHLVEWNESE----------------GAIKRTYSGFRK-RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM 620 (1071)
Q Consensus 558 ~~~~~~d~~~~i~iwd~~~----------------~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 620 (1071)
+|+. +|.|.+.++.. +..+..+.+|.+ ..|+|++++-||..|++|+.||+++|||+.+.
T Consensus 234 iGt~----~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~ 309 (476)
T KOG0646|consen 234 IGTE----EGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSK 309 (476)
T ss_pred ecCC----cceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchH
Confidence 9985 77788777642 234556677765 47999999999999999999999999999999
Q ss_pred ceeEEEecCCCCCCcceEEEcCC
Q 001477 621 NMLTTVDADGGLPASPRLRFNKE 643 (1071)
Q Consensus 621 ~~~~~~~~~~~~~~v~~~~~s~~ 643 (1071)
++++++... .++|+.+.+.|-
T Consensus 310 Q~iRtl~~~--kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 310 QCIRTLQTS--KGPVTNLQINPL 330 (476)
T ss_pred HHHHHHhhh--ccccceeEeecc
Confidence 999888632 347888888663
No 137
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.90 E-value=5.4e-21 Score=208.39 Aligned_cols=216 Identities=15% Similarity=0.159 Sum_probs=157.1
Q ss_pred EEEEEecCCcEEEEE-e-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCCEEEEEeCCC-eEEEEEccCCeEEEEe
Q 001477 844 ACIALSKNDSYVMSA-S-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDS-SVQIYNVRVDEVKTKL 920 (1071)
Q Consensus 844 ~~v~~s~d~~~la~~-~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg-~v~vwd~~~~~~~~~l 920 (1071)
..++++|+++.++++ . ++.+++||+.+.+.+..+.. ...+.+++|+| +++++++++.++ .+.+||..+++....+
T Consensus 76 ~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~~~~~~~~~~ 153 (300)
T TIGR03866 76 ELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSP-DGKIVVNTSETTNMAHFIDTKTYEIVDNV 153 (300)
T ss_pred cEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECC-CCCEEEEEecCCCeEEEEeCCCCeEEEEE
Confidence 356788888877655 3 78999999998888777753 23468899999 889998888765 5778899988876655
Q ss_pred cCcCCCeeEEEEcCCCCEEEEE-eCCCcEEEEECCCCceeeeeeecCCCCCCCCCCCceEEEEccCCCEEEE--EECCeE
Q 001477 921 KGHQNRITGLAFSPTLNALVSS-GADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV--VHESQI 997 (1071)
Q Consensus 921 ~~h~~~v~~l~~s~d~~~l~s~-~~d~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~--~~d~~i 997 (1071)
.. ...+.+++|+||+++|+.+ ..++.|++||+++++.+..........+. .......++|+|||+++++ +.++.+
T Consensus 154 ~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~s~dg~~~~~~~~~~~~i 231 (300)
T TIGR03866 154 LV-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHP-EAVQPVGIKLTKDGKTAFVALGPANRV 231 (300)
T ss_pred Ec-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeeccccccc-ccCCccceEECCCCCEEEEEcCCCCeE
Confidence 42 2346789999999988544 56999999999998765443222111110 0023457899999998655 356789
Q ss_pred EEEeC-CCCceeecCCCCCCCCCeeEEEEecCCcEEEEE-eCCCeEEEEEcCCCeEEEEeCCCcccCccceeec
Q 001477 998 SVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAG-FCDGAIGVFDAETLRFRCRIGPSAYIPTYAVRLH 1069 (1071)
Q Consensus 998 ~vwd~-~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~t~-~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 1069 (1071)
.+||. +.+...... +...+.+++|+|+|++|+++ +.++.|.+||+.+++.+.++... -.+|++.++
T Consensus 232 ~v~d~~~~~~~~~~~----~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~--~~~~~~~~~ 299 (300)
T TIGR03866 232 AVVDAKTYEVLDYLL----VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG--RLPWGVVVR 299 (300)
T ss_pred EEEECCCCcEEEEEE----eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc--cccceeEeC
Confidence 99999 444443332 14578999999999999876 46899999999999999999653 444666654
No 138
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=2.6e-22 Score=202.70 Aligned_cols=290 Identities=13% Similarity=0.221 Sum_probs=228.4
Q ss_pred CCCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCce--eEEecCCCCcEEEEEEccCCC-EEEEeccCCCCCCeEEEE
Q 001477 496 HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS--RVDYDAPGNWCTMMAYSADGT-RLFSCGTSKEGESHLVEW 572 (1071)
Q Consensus 496 h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~--~~~~~~~~~~i~~~~~s~~~~-~l~~~~~~~d~~~~i~iw 572 (1071)
-.+.|+++.|+|.. ..+++++.|+++++|-++.... +..+.....+|.+.+|.|+|. .+++++. ...++.|
T Consensus 212 s~~~I~sv~FHp~~--plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~r----rky~ysy 285 (514)
T KOG2055|consen 212 SHGGITSVQFHPTA--PLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGR----RKYLYSY 285 (514)
T ss_pred CcCCceEEEecCCC--ceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEeccc----ceEEEEe
Confidence 35789999999977 8999999999999998875443 345555677999999999999 6667664 6779999
Q ss_pred eCCCCceeE--EeecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEE
Q 001477 573 NESEGAIKR--TYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVT 650 (1071)
Q Consensus 573 d~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 650 (1071)
|+.+++..+ ...++....+.....++++++|+..|..|.|.+-...+++.+..+...+ .|..++|+.|++.|++.
T Consensus 286 Dle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG---~v~~~~fsSdsk~l~~~ 362 (514)
T KOG2055|consen 286 DLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEG---VVSDFTFSSDSKELLAS 362 (514)
T ss_pred eccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeecc---EEeeEEEecCCcEEEEE
Confidence 999887543 4455555578888999999999999999999999999999999998764 58999999999999999
Q ss_pred eCCCcEEEEEcCChhhhhhhhcCCccccccCCCCCCCCCCccccccCCCCccccccCCCCCCCCCCCCcccccccCCCCc
Q 001477 651 TSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDG 730 (1071)
Q Consensus 651 ~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 730 (1071)
+.+|.|.+||++.. .+++.+...
T Consensus 363 ~~~GeV~v~nl~~~-~~~~rf~D~-------------------------------------------------------- 385 (514)
T KOG2055|consen 363 GGTGEVYVWNLRQN-SCLHRFVDD-------------------------------------------------------- 385 (514)
T ss_pred cCCceEEEEecCCc-ceEEEEeec--------------------------------------------------------
Confidence 99999999999866 333222110
Q ss_pred ccccccccccccccCccceeccCCCCCcccceeeecCCCcCCCceEEEEEecccchhhhccccceeEEEecccccCCCCC
Q 001477 731 SRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSG 810 (1071)
Q Consensus 731 ~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~g 810 (1071)
..-.-++++.|++|.++++|+..|.|-|||...--...
T Consensus 386 ----------------------------------------G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~-- 423 (514)
T KOG2055|consen 386 ----------------------------------------GSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFAST-- 423 (514)
T ss_pred ----------------------------------------CccceeeeeecCCCceEEeccCcceEEEeccchhhccC--
Confidence 01122678889999999999999999999865321111
Q ss_pred ccceeecceeccCCCCCccccccCCCCCCCCCeEEEEEecCCcEEEEEe---CCeEEEEECCCCeEEEEEeCCC---CCe
Q 001477 811 KATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS---GGKVSLFNMMTFKVMTMFMSPP---PAA 884 (1071)
Q Consensus 811 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~v~~s~d~~~la~~~---dg~i~vwd~~~~~~~~~~~~~~---~~i 884 (1071)
+.+++.....- ...|+++.|++|.+.||.++ ...+++-.+.+......++... +.|
T Consensus 424 --------------~PkPik~~dNL----tt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~v 485 (514)
T KOG2055|consen 424 --------------NPKPIKTVDNL----TTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHV 485 (514)
T ss_pred --------------CCCchhhhhhh----heeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccce
Confidence 11111111111 56799999999999999998 5789999999888877776543 468
Q ss_pred EEEEEcCCCCCEEEEEeCCCeEEEEEcc
Q 001477 885 TFLAFHPQDNNIIAIGMEDSSVQIYNVR 912 (1071)
Q Consensus 885 ~~l~~sp~~~~~la~g~~dg~v~vwd~~ 912 (1071)
+|++||| .+.++|.|..+|.|.+|.+.
T Consensus 486 tc~aFSP-~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 486 TCMAFSP-NSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred EEEEecC-CCceEEeecCCCceeeEeec
Confidence 9999999 88999999999999999864
No 139
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.90 E-value=1.1e-22 Score=206.61 Aligned_cols=283 Identities=11% Similarity=0.173 Sum_probs=231.4
Q ss_pred cCCCCcEEEEEEccCCCEEEEeccCCCCCCeEEEEeCCCC---ceeEEeecc-cccceeEEEEeCCCCEEEEEeCCCcEE
Q 001477 538 DAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG---AIKRTYSGF-RKRSLGVVQFDTTRNRFLAAGDEFQIK 613 (1071)
Q Consensus 538 ~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~---~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~ 613 (1071)
-.|+.-|.++++|...+++++|+ .+.|+|||+... .++..+... .+..|+++...|||+.|++|++-.++.
T Consensus 416 L~HGEvVcAvtIS~~trhVyTgG-----kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastls 490 (705)
T KOG0639|consen 416 LAHGEVVCAVTISNPTRHVYTGG-----KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLS 490 (705)
T ss_pred hccCcEEEEEEecCCcceeEecC-----CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceee
Confidence 34677888999999999999996 778999999743 344444443 334789999999999999999999999
Q ss_pred EEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCChhhhhhhhcCCccccccCCCCCCCCCCccc
Q 001477 614 FWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTI 693 (1071)
Q Consensus 614 iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 693 (1071)
|||+....+....+.......+.+++.+||.+..+++..||.|.|||+.+. .+++.+++
T Consensus 491 iWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq-~~VrqfqG-------------------- 549 (705)
T KOG0639|consen 491 IWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQ-TLVRQFQG-------------------- 549 (705)
T ss_pred eeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccc-eeeecccC--------------------
Confidence 999997665554444444456789999999999999999999999999877 55566555
Q ss_pred cccCCCCccccccCCCCCCCCCCCCcccccccCCCCcccccccccccccccCccceeccCCCCCcccceeeecCCCcCCC
Q 001477 694 NALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAAS 773 (1071)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~ 773 (1071)
|.+
T Consensus 550 -----------------------------------------------------------------------------htD 552 (705)
T KOG0639|consen 550 -----------------------------------------------------------------------------HTD 552 (705)
T ss_pred -----------------------------------------------------------------------------CCC
Confidence 445
Q ss_pred ceEEEEEecccchhhhccccceeEEEecccccCCCCCccceeecceeccCCCCCccccccCCCCCCCCCeEEEEEecCCc
Q 001477 774 KVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDS 853 (1071)
Q Consensus 774 ~v~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~v~~s~d~~ 853 (1071)
.+.|+.+++||..|-+|+-|++||.||+..... +...+ . ...|.++.++|.+.
T Consensus 553 GascIdis~dGtklWTGGlDntvRcWDlregrq---------------------lqqhd-----F-~SQIfSLg~cP~~d 605 (705)
T KOG0639|consen 553 GASCIDISKDGTKLWTGGLDNTVRCWDLREGRQ---------------------LQQHD-----F-SSQIFSLGYCPTGD 605 (705)
T ss_pred CceeEEecCCCceeecCCCccceeehhhhhhhh---------------------hhhhh-----h-hhhheecccCCCcc
Confidence 678999999999999999999999997654221 11111 2 67899999999999
Q ss_pred EEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEccCCeEEEEecCcCCCeeEEEE
Q 001477 854 YVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAF 932 (1071)
Q Consensus 854 ~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~~~v~~l~~ 932 (1071)
+||+|- ++.+.|.... +.....+.-|.+-|.++.|++ -|+++++.+.|..+-.|...-|..+...+ ..+.|.+..+
T Consensus 606 WlavGMens~vevlh~s-kp~kyqlhlheScVLSlKFa~-cGkwfvStGkDnlLnawrtPyGasiFqsk-E~SsVlsCDI 682 (705)
T KOG0639|consen 606 WLAVGMENSNVEVLHTS-KPEKYQLHLHESCVLSLKFAY-CGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDI 682 (705)
T ss_pred ceeeecccCcEEEEecC-CccceeecccccEEEEEEecc-cCceeeecCchhhhhhccCccccceeecc-ccCcceeeee
Confidence 999998 8888888764 455567777999999999999 99999999999999999998887666666 4567999999
Q ss_pred cCCCCEEEEEeCCCcEEEEEC
Q 001477 933 SPTLNALVSSGADAQLCMWSI 953 (1071)
Q Consensus 933 s~d~~~l~s~~~d~~v~vWd~ 953 (1071)
|.|.++++||+.|+...||.+
T Consensus 683 S~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 683 SFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred ccCceEEEecCCCcceEEEEE
Confidence 999999999999998888865
No 140
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=2.5e-22 Score=192.61 Aligned_cols=253 Identities=13% Similarity=0.233 Sum_probs=196.5
Q ss_pred eeEEEECCCCCEEEEEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccCCcee
Q 001477 411 VNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ 490 (1071)
Q Consensus 411 v~~~~~spd~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~ 490 (1071)
..|+.||+.|.+||+|+.||.|.|||+.+...-+ .+.+|..+|++++||+||+ .|+|+|.|..|.+||+..|.++
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar---~lsaH~~pi~sl~WS~dgr--~LltsS~D~si~lwDl~~gs~l 100 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIAR---MLSAHVRPITSLCWSRDGR--KLLTSSRDWSIKLWDLLKGSPL 100 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhh---hhhccccceeEEEecCCCC--EeeeecCCceeEEEeccCCCce
Confidence 7899999999999999999999999999976554 7789999999999999999 8999999999999999999999
Q ss_pred EEecCCCCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCceeEEecCCCC----cEEEEEEccCCCEEEEeccCCCCC
Q 001477 491 YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN----WCTMMAYSADGTRLFSCGTSKEGE 566 (1071)
Q Consensus 491 ~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~----~i~~~~~s~~~~~l~~~~~~~d~~ 566 (1071)
+.++ ...+|+...|+|......+++- .+..-.+-++..+.....-....+ .-.+..|.+.|+++++|.. .
T Consensus 101 ~rir-f~spv~~~q~hp~k~n~~va~~-~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGts----K 174 (405)
T KOG1273|consen 101 KRIR-FDSPVWGAQWHPRKRNKCVATI-MEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTS----K 174 (405)
T ss_pred eEEE-ccCccceeeeccccCCeEEEEE-ecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecC----c
Confidence 9886 7889999999998764444443 333344555554332221111111 2233468899999999975 8
Q ss_pred CeEEEEeCCCCceeEEeecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCC-------cee--EEEecCCCCCCcce
Q 001477 567 SHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM-------NML--TTVDADGGLPASPR 637 (1071)
Q Consensus 567 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-------~~~--~~~~~~~~~~~v~~ 637 (1071)
|.+.++|..+-+++..++-.....|..+.++..|..++..+.|+.|+.|+.+.- ++. ..++.--+...-.+
T Consensus 175 Gkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ 254 (405)
T KOG1273|consen 175 GKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKK 254 (405)
T ss_pred ceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhh
Confidence 889999999999988887766447999999999999999999999999998731 111 11111111123468
Q ss_pred EEEcCCCCEEEEEeC-CCcEEEEEcCChhhhhhhhcCCc
Q 001477 638 LRFNKEGSLLAVTTS-DNGIKILANSDGVRLLRMLEGRA 675 (1071)
Q Consensus 638 ~~~s~~~~~l~~~~~-dg~v~iw~~~~~~~~~~~~~~~~ 675 (1071)
++|+.+|.+++.++. ...++||....| .+++.+.|..
T Consensus 255 ccfs~dgeYv~a~s~~aHaLYIWE~~~G-sLVKILhG~k 292 (405)
T KOG1273|consen 255 CCFSGDGEYVCAGSARAHALYIWEKSIG-SLVKILHGTK 292 (405)
T ss_pred eeecCCccEEEeccccceeEEEEecCCc-ceeeeecCCc
Confidence 899999999988775 568999999888 7888887765
No 141
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.90 E-value=3.2e-20 Score=202.31 Aligned_cols=292 Identities=13% Similarity=0.151 Sum_probs=215.5
Q ss_pred EEEEEeCCCcEEEEEccCCceeEEecCCCCCeEEEEecccCCccEE-EEEecCCeEEEEEcCCCceeEEecCCCCcEEEE
Q 001477 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFI-FSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMM 547 (1071)
Q Consensus 469 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~ 547 (1071)
++++++.|+.|++||+.+++.+..+..+.. +.+++|+|++ ..+ ++++.++.|++||..+++....+..+. .+..+
T Consensus 3 ~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg--~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~ 78 (300)
T TIGR03866 3 AYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDG--KLLYVCASDSDTIQVIDLATGEVIGTLPSGP-DPELF 78 (300)
T ss_pred EEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCC--CEEEEEECCCCeEEEEECCCCcEEEeccCCC-CccEE
Confidence 688999999999999999999888876544 6789998764 555 677789999999999877665554433 35678
Q ss_pred EEccCCCEEEEeccCCCCCCeEEEEeCCCCceeEEeecccccceeEEEEeCCCCEEEEEeCCC-cEEEEeCCCCceeEEE
Q 001477 548 AYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEF-QIKFWDMDNMNMLTTV 626 (1071)
Q Consensus 548 ~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~ 626 (1071)
+|+|+++.+++++. .++.+.+||+.+++.+..+.... .+..++|+|+++++++++.++ .+.+||..+++....+
T Consensus 79 ~~~~~g~~l~~~~~---~~~~l~~~d~~~~~~~~~~~~~~--~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~ 153 (300)
T TIGR03866 79 ALHPNGKILYIANE---DDNLVTVIDIETRKVLAEIPVGV--EPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNV 153 (300)
T ss_pred EECCCCCEEEEEcC---CCCeEEEEECCCCeEEeEeeCCC--CcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEE
Confidence 99999998876542 36789999999888877776432 467799999999999988764 5778899888776655
Q ss_pred ecCCCCCCcceEEEcCCCCEEEEEe-CCCcEEEEEcCChhhhhhhhcCCccccccCCCCCCCCCCccccccCCCCccccc
Q 001477 627 DADGGLPASPRLRFNKEGSLLAVTT-SDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAA 705 (1071)
Q Consensus 627 ~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 705 (1071)
.... ....++|+|+++.+++++ .++.|++||..++ +....+
T Consensus 154 ~~~~---~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~-~~~~~~---------------------------------- 195 (300)
T TIGR03866 154 LVDQ---RPRFAEFTADGKELWVSSEIGGTVSVIDVATR-KVIKKI---------------------------------- 195 (300)
T ss_pred EcCC---CccEEEECCCCCEEEEEcCCCCEEEEEEcCcc-eeeeee----------------------------------
Confidence 4322 357799999999886554 5899999998765 111100
Q ss_pred cCCCCCCCCCCCCcccccccCCCCcccccccccccccccCccceeccCCCCCcccceeeecCCCcCCCceEEEEEecccc
Q 001477 706 IAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGL 785 (1071)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~ 785 (1071)
.+...+.
T Consensus 196 -------------------------------------------------------------------------~~~~~~~ 202 (300)
T TIGR03866 196 -------------------------------------------------------------------------TFEIPGV 202 (300)
T ss_pred -------------------------------------------------------------------------eeccccc
Confidence 0000000
Q ss_pred hhhhccccceeEEEecccccCCCCCccceeecceeccCCCCCccccccCCCCCCCCCeEEEEEecCCcEEEEEe--CCeE
Q 001477 786 SLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS--GGKV 863 (1071)
Q Consensus 786 ~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~v~~s~d~~~la~~~--dg~i 863 (1071)
... ......++|+||+++++++. ++.+
T Consensus 203 -----------------------------------------------~~~----~~~~~~i~~s~dg~~~~~~~~~~~~i 231 (300)
T TIGR03866 203 -----------------------------------------------HPE----AVQPVGIKLTKDGKTAFVALGPANRV 231 (300)
T ss_pred -----------------------------------------------ccc----cCCccceEECCCCCEEEEEcCCCCeE
Confidence 000 11233577889998765543 6789
Q ss_pred EEEECCCCeEEEEEeCCCCCeEEEEEcCCCCCEEEEE-eCCCeEEEEEccCCeEEEEecCcCCCeeEEEEcC
Q 001477 864 SLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIG-MEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSP 934 (1071)
Q Consensus 864 ~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g-~~dg~v~vwd~~~~~~~~~l~~h~~~v~~l~~s~ 934 (1071)
.+||+.+++....+. +...+.+++|+| ++++|+++ ..+|.|.+||+.+++++..+... ...+.++++|
T Consensus 232 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~-~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 232 AVVDAKTYEVLDYLL-VGQRVWQLAFTP-DEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred EEEECCCCcEEEEEE-eCCCcceEEECC-CCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-cccceeEeCC
Confidence 999999888876654 445789999999 88888776 56899999999999999998854 5568888875
No 142
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=8.8e-24 Score=224.61 Aligned_cols=236 Identities=17% Similarity=0.322 Sum_probs=214.0
Q ss_pred cccCCCCeeEEEECCCCCEEEEEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEE
Q 001477 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1071)
Q Consensus 404 ~~~h~~~v~~~~~spd~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd 483 (1071)
+..|...|.|+..-..++.+++|+.|..+-+|.+.....+. .+.+|..+|.++.|+++.. +|++|+.+|+|++||
T Consensus 24 ~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~---S~~~hespIeSl~f~~~E~--LlaagsasgtiK~wD 98 (825)
T KOG0267|consen 24 FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAIT---SLTGHESPIESLTFDTSER--LLAAGSASGTIKVWD 98 (825)
T ss_pred hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhh---eeeccCCcceeeecCcchh--hhcccccCCceeeee
Confidence 34588899999987788999999999999999988765554 6789999999999999988 899999999999999
Q ss_pred ccCCceeEEecCCCCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCceeEEecCCCCcEEEEEEccCCCEEEEeccCC
Q 001477 484 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK 563 (1071)
Q Consensus 484 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~ 563 (1071)
+..++.++++.+|...+.++.|+|.+ .+.++|+.|..+++||.+..++...+.+|...+..+.|+|+|++++.++.
T Consensus 99 leeAk~vrtLtgh~~~~~sv~f~P~~--~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~e-- 174 (825)
T KOG0267|consen 99 LEEAKIVRTLTGHLLNITSVDFHPYG--EFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGE-- 174 (825)
T ss_pred hhhhhhhhhhhccccCcceeeeccce--EEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCC--
Confidence 99999999999999999999999976 88999999999999999999999999999999999999999999999975
Q ss_pred CCCCeEEEEeCCCCceeEEeecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCC
Q 001477 564 EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKE 643 (1071)
Q Consensus 564 d~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~ 643 (1071)
|..+++||...|+....|..|.. .+.++.|+|..-.++.||.|+++++||+++.+.+...... ...|.+..|+|+
T Consensus 175 --d~tvki~d~~agk~~~ef~~~e~-~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~--~~~v~~~~fn~~ 249 (825)
T KOG0267|consen 175 --DNTVKIWDLTAGKLSKEFKSHEG-KVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPE--TDGVRSLAFNPD 249 (825)
T ss_pred --cceeeeecccccccccccccccc-cccccccCchhhhhccCCCCceeeeeccceeEEeeccCCc--cCCceeeeecCC
Confidence 78899999999999999999988 8999999999888889999999999999998887776543 457999999999
Q ss_pred CCEEEEEeCC
Q 001477 644 GSLLAVTTSD 653 (1071)
Q Consensus 644 ~~~l~~~~~d 653 (1071)
+..+++|...
T Consensus 250 ~~~~~~G~q~ 259 (825)
T KOG0267|consen 250 GKIVLSGEQI 259 (825)
T ss_pred ceeeecCchh
Confidence 9998887655
No 143
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=2e-21 Score=202.24 Aligned_cols=316 Identities=16% Similarity=0.223 Sum_probs=233.7
Q ss_pred EeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccCCceeEEecCCCCCeEEEEecccCCccEEEEEecCCeEEEEE
Q 001477 448 EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWL 527 (1071)
Q Consensus 448 ~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd 527 (1071)
.+.+|.+.|.++...|.|. +|++|+.||+|+||.+.+|+|++++. ..+.|.|++|+|..+-..|+++-.+. +.+-+
T Consensus 395 vyrGHtg~Vr~iSvdp~G~--wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~-~~ivn 470 (733)
T KOG0650|consen 395 VYRGHTGLVRSISVDPSGE--WLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGEC-VLIVN 470 (733)
T ss_pred eEeccCCeEEEEEecCCcc--eeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCc-eEEeC
Confidence 5779999999999999999 89999999999999999999999886 56789999999988766666655444 55544
Q ss_pred cCCCceeEEecCCCCcEEEEEEccCCCEEEEeccCCCCCCeEEEEeCCCCc----eeEEeecccccceeEEEEeCCCCEE
Q 001477 528 YDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA----IKRTYSGFRKRSLGVVQFDTTRNRF 603 (1071)
Q Consensus 528 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l 603 (1071)
..-+..+.. -+....|+.+-.....+..+..|.-.... -++..-.|.. .|..+.|+..|.||
T Consensus 471 p~~G~~~e~-------------~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k-~i~~vtWHrkGDYl 536 (733)
T KOG0650|consen 471 PIFGDRLEV-------------GPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPK-SIRQVTWHRKGDYL 536 (733)
T ss_pred ccccchhhh-------------cchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCC-ccceeeeecCCceE
Confidence 332211110 01111222221111234567778654211 1223333444 89999999999999
Q ss_pred EEEe---CCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCChhhhhhhhcCCcccccc
Q 001477 604 LAAG---DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNR 680 (1071)
Q Consensus 604 ~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~ 680 (1071)
++.. ....|.|.++.......-+... .+.|.++.|+|...+|++++. ..|++||+..+ .+++.+..
T Consensus 537 atV~~~~~~~~VliHQLSK~~sQ~PF~ks--kG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kq-elvKkL~t------- 605 (733)
T KOG0650|consen 537 ATVMPDSGNKSVLIHQLSKRKSQSPFRKS--KGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQ-ELVKKLLT------- 605 (733)
T ss_pred EEeccCCCcceEEEEecccccccCchhhc--CCceeEEEecCCCceEEEEec-cceEEEehhHH-HHHHHHhc-------
Confidence 9965 3457899999876655444322 236899999999999888875 48999998764 33333211
Q ss_pred CCCCCCCCCCccccccCCCCccccccCCCCCCCCCCCCcccccccCCCCcccccccccccccccCccceeccCCCCCccc
Q 001477 681 CPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQ 760 (1071)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~ 760 (1071)
T Consensus 606 -------------------------------------------------------------------------------- 605 (733)
T KOG0650|consen 606 -------------------------------------------------------------------------------- 605 (733)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceeeecCCCcCCCceEEEEEecccchhhhccccceeEEEecccccCCCCCccceeecceeccCCCCCccccccCCCCCCC
Q 001477 761 IKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTE 840 (1071)
Q Consensus 761 ~~~~~~~~~~~~~~v~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 840 (1071)
+ .
T Consensus 606 --------------------------------------------------------------------------g----~ 607 (733)
T KOG0650|consen 606 --------------------------------------------------------------------------G----S 607 (733)
T ss_pred --------------------------------------------------------------------------C----C
Confidence 1 3
Q ss_pred CCeEEEEEecCCcEEEEEe-CCeEEEEECCC-CeEEEEEeCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcc------
Q 001477 841 ESAACIALSKNDSYVMSAS-GGKVSLFNMMT-FKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVR------ 912 (1071)
Q Consensus 841 ~~v~~v~~s~d~~~la~~~-dg~i~vwd~~~-~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~------ 912 (1071)
..|..++++|.|.-|+.|+ |+.++.||++- .++.+++..|...+++|+|++ .-.++++|+.||++.|+--.
T Consensus 608 kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~-ryPLfas~sdDgtv~Vfhg~VY~Dl~ 686 (733)
T KOG0650|consen 608 KWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHK-RYPLFASGSDDGTVIVFHGMVYNDLL 686 (733)
T ss_pred eeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhcc-ccceeeeecCCCcEEEEeeeeehhhh
Confidence 3477788888888888888 99999999874 467788888999999999999 88899999999999999632
Q ss_pred CC---eEEEEecCcCCC----eeEEEEcCCCCEEEEEeCCCcEEEE
Q 001477 913 VD---EVKTKLKGHQNR----ITGLAFSPTLNALVSSGADAQLCMW 951 (1071)
Q Consensus 913 ~~---~~~~~l~~h~~~----v~~l~~s~d~~~l~s~~~d~~v~vW 951 (1071)
.+ -+++.+++|... |....|+|...+|+|+|.||+|++|
T Consensus 687 qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 687 QNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred cCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 11 256788899876 8899999999999999999999999
No 144
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.89 E-value=7.8e-22 Score=207.03 Aligned_cols=437 Identities=16% Similarity=0.151 Sum_probs=271.4
Q ss_pred CCCCeeE--EEECC---CCCEEEEEeCCCeEEEEEecCCCcc---ceeeEeecccCCEEEEEEecCCCceEEEEEeCCCc
Q 001477 407 AAISVNR--CVWGP---DGLMLGVAFSKHIVHLYTYNPTGEL---RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKM 478 (1071)
Q Consensus 407 h~~~v~~--~~~sp---d~~~la~~~~dg~i~iwd~~~~~~~---~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~ 478 (1071)
|.-++.- ..|++ ....||.+..||.|.++|......- +.......|...|.++.|.| |+. .|++++.|.+
T Consensus 46 ~~~p~pPf~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wap-ge~-~lVsasGDsT 123 (720)
T KOG0321|consen 46 DGLPVPPFADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAP-GES-LLVSASGDST 123 (720)
T ss_pred CCCCCCCccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCC-Cce-eEEEccCCce
Confidence 3334443 66766 3448899999999999998754321 12335668999999999999 554 8999999999
Q ss_pred EEEEEccCCceeEE--ecCCCCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCceeEEecCCCCcEEEEEEccCCCEE
Q 001477 479 IKVWDVVAGRKQYT--FEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRL 556 (1071)
Q Consensus 479 i~iwd~~~~~~~~~--~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 556 (1071)
+++||+.+++++.. +.||.+.|.+++|.+.+. ..+++|+.||.|.+||++-........ ....++.. .++.-
T Consensus 124 ~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~-~vF~tGgRDg~illWD~R~n~~d~~e~-~~~~~~~~---~n~~p- 197 (720)
T KOG0321|consen 124 IRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNP-AVFCTGGRDGEILLWDCRCNGVDALEE-FDNRIYGR---HNTAP- 197 (720)
T ss_pred eeeeeeccceeecceeecccccccchhhhccCCC-cceeeccCCCcEEEEEEeccchhhHHH-Hhhhhhcc---ccCCC-
Confidence 99999999988876 889999999999999754 899999999999999998544111000 00000000 00000
Q ss_pred EEeccCCCCCCeEEEEeCCCCceeEEeecccccceeEEEEeCCCCEEEEEeC-CCcEEEEeCCCCceeEEE------ecC
Q 001477 557 FSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGD-EFQIKFWDMDNMNMLTTV------DAD 629 (1071)
Q Consensus 557 ~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~------~~~ 629 (1071)
....-....++-|-...+... . .|+ +.+..|...|+++|. |+.|+|||+++....... ..+
T Consensus 198 ---tpskp~~kr~~k~kA~s~ti~-------s-svT-vv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~ 265 (720)
T KOG0321|consen 198 ---TPSKPLKKRIRKWKAASNTIF-------S-SVT-VVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYP 265 (720)
T ss_pred ---CCCchhhccccccccccCcee-------e-eeE-EEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCcc
Confidence 000000111222222211110 1 233 446678889999775 999999999976544332 111
Q ss_pred CC---CCCcceEEEcCCCCEEEEEeCCCcEEEEEcCChhhhhhhhcCCccccccCCCCCCCCCCccccccCCCCcccccc
Q 001477 630 GG---LPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAI 706 (1071)
Q Consensus 630 ~~---~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 (1071)
.+ ...+.++.....|.+|++.+.|+.|++|++.+-..
T Consensus 266 t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~---------------------------------------- 305 (720)
T KOG0321|consen 266 THSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSI---------------------------------------- 305 (720)
T ss_pred CcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCc----------------------------------------
Confidence 11 23456677777788888888899999999754300
Q ss_pred CCCCCCCCCCCCcccccccCCCCcccccccccccccccCccceeccCCCCCcccceeeecCCCcCCCceEEEEEecccch
Q 001477 707 APTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLS 786 (1071)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~ 786 (1071)
+|.+
T Consensus 306 --------------------------------------------------------------------------sP~~-- 309 (720)
T KOG0321|consen 306 --------------------------------------------------------------------------SPVA-- 309 (720)
T ss_pred --------------------------------------------------------------------------Cchh--
Confidence 0000
Q ss_pred hhhccccceeEEEecccccCCCCCccceeecceeccCCCCCccccccCCCCCCCCCeEEEEEecCCcEEEEEe-CCeEEE
Q 001477 787 LLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSL 865 (1071)
Q Consensus 787 l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~v~~s~d~~~la~~~-dg~i~v 865 (1071)
++.+... ...-..-..+||+.++++|+ |+..++
T Consensus 310 ~~sg~~~----------------------------------------------~sf~vks~lSpd~~~l~SgSsd~~ayi 343 (720)
T KOG0321|consen 310 EFSGKLN----------------------------------------------SSFYVKSELSPDDCSLLSGSSDEQAYI 343 (720)
T ss_pred hccCccc----------------------------------------------ceeeeeeecCCCCceEeccCCCcceee
Confidence 0000000 00011224678999999998 999999
Q ss_pred EECCCCeE-EEEEeCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEccCCeE--------------EEEecCcCCCeeEE
Q 001477 866 FNMMTFKV-MTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEV--------------KTKLKGHQNRITGL 930 (1071)
Q Consensus 866 wd~~~~~~-~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~--------------~~~l~~h~~~v~~l 930 (1071)
|.+.+.+. ...+.+|.-.|++++|.|..-.-+|++++|..++||++..+-. ...+++|.-.+..+
T Consensus 344 w~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l~e~~~adk~s~v~~~~~rfk~~~p~~~nv 423 (720)
T KOG0321|consen 344 WVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGLEEIYAADKDSIVYEYSRRFKGHLPQVLNV 423 (720)
T ss_pred eeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCchhhccccccchhhhhhhhhhhccccccccc
Confidence 99887543 4557789999999999986556677889999999999965421 22344555555555
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeecCCCCCCCCCCCceEEEEccCCCEEEEE-----ECCeEEEEeCCCC
Q 001477 931 AFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-----HESQISVYDSKLE 1005 (1071)
Q Consensus 931 ~~s~d~~~l~s~~~d~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-----~d~~i~vwd~~~~ 1005 (1071)
.++-.+.+.... .+..++|.- ...++-+|++.-...+ ..-.|.+.+.+..
T Consensus 424 ~ss~~~t~~~pR--~~~~r~~ss-----------------------P~s~a~~~s~~s~~~~~~~t~qt~~i~~~p~kr~ 478 (720)
T KOG0321|consen 424 NSSLRKTYKDPR--EGMNRISSS-----------------------PVSLACSPSGASDDCGYGVTDQTSGIVVFPTKRN 478 (720)
T ss_pred cccccccccchh--hhccccccC-----------------------ccchhcCcCCcccccCCCcccccccceecchhcc
Confidence 554333333222 333444432 2334445554444432 1234555555333
Q ss_pred ceeecCCCCCCCCCeeEEEEecCCcEEEEEeC-----------CCeEEEEEcCCCe
Q 001477 1006 CSRSWSPKDALPAPISSAIYSCDGLLVYAGFC-----------DGAIGVFDAETLR 1050 (1071)
Q Consensus 1006 ~~~~~~~~~~h~~~v~~~~~s~dg~~l~t~~~-----------Dg~i~vwd~~~~~ 1050 (1071)
+...-....+|-..|+...+++.+..+++.+- +..+.+|....-.
T Consensus 479 ~~~ss~~s~~~~~Svs~~d~ss~~s~~~s~SP~~~~~stpp~sets~~s~~s~l~p 534 (720)
T KOG0321|consen 479 KPSSSRGSGGHLSSVSAEDWSSEKSQLASRSPQKNRGSTPPISETSVNSPNSSLHP 534 (720)
T ss_pred CccccccccccccccccCCCccccccccccCcccccCCCCCcCcccccccccccCC
Confidence 33333333456777777778887878888887 8889998875443
No 145
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=7.6e-22 Score=211.83 Aligned_cols=297 Identities=11% Similarity=0.181 Sum_probs=224.2
Q ss_pred CCCeEEEEeecCCCeEEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeEEEECC-CCCEEE
Q 001477 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP-DGLMLG 424 (1071)
Q Consensus 346 ~~~V~~~~fsp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~sp-d~~~la 424 (1071)
.....++...++-..+++.| ...+.||.+....... .+.+.+-.+ ..-...+..|.|+. +.++||
T Consensus 39 k~~~nAIs~nr~~~qiv~AG--rs~lklyai~~~~~~~--~~~~~~k~k----------qn~~~S~~DVkW~~~~~NlIA 104 (839)
T KOG0269|consen 39 KAKANAISVNRDINQIVVAG--RSLLKLYAINPNDFSE--KCNHRFKTK----------QNKFYSAADVKWGQLYSNLIA 104 (839)
T ss_pred ccccceEeecCCcceeEEec--ccceeeEeeCcccCCc--ceeeecccc----------cceeeehhhcccccchhhhhe
Confidence 34667777778876555544 3467777765432211 111111000 01112356678875 678999
Q ss_pred EEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccCCceeEEecCCCCCeEEEE
Q 001477 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 504 (1071)
Q Consensus 425 ~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~ 504 (1071)
+++..|.|.+||+.....-+....+..|...++++.|++...+ +|++||.||+|++||++..+...++.+....|..+.
T Consensus 105 T~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~-iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~ 183 (839)
T KOG0269|consen 105 TCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPN-ILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVK 183 (839)
T ss_pred eecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCcc-EEEecCCCceEEEEeeecccccccccccchhhhcee
Confidence 9999999999999873222222367789999999999998877 899999999999999999999999999999999999
Q ss_pred ecccCCccEEEEEecCCeEEEEEcCCCce-eEEecCCCCcEEEEEEccCCCEEEEeccCCCCCCeEEEEeCCCCceeEEe
Q 001477 505 PHHKESIQFIFSTAIDGKIKAWLYDYLGS-RVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTY 583 (1071)
Q Consensus 505 ~~~~~~~~~l~s~~~d~~i~vwd~~~~~~-~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~ 583 (1071)
|+|.. +.+++++...|.+++||++.... ...+..|.++|.|+.|+|++.+|++|+. |++|+|||..+++.-...
T Consensus 184 fsp~~-~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGR----DK~vkiWd~t~~~~~~~~ 258 (839)
T KOG0269|consen 184 FSPGY-GNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGR----DKMVKIWDMTDSRAKPKH 258 (839)
T ss_pred eccCC-CceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCC----CccEEEEeccCCCcccee
Confidence 99975 58999999999999999987654 5688999999999999999999999985 888999999877655544
Q ss_pred ecccccceeEEEEeCCCCE-EEEEe--CCCcEEEEeCCCCc-eeEEEecCCCCCCcceEEEcC-CCCEEEEEeCCCcEEE
Q 001477 584 SGFRKRSLGVVQFDTTRNR-FLAAG--DEFQIKFWDMDNMN-MLTTVDADGGLPASPRLRFNK-EGSLLAVTTSDNGIKI 658 (1071)
Q Consensus 584 ~~~~~~~v~~~~~~~~~~~-l~~~~--~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~v~i 658 (1071)
.-+...++.++.|-|...+ |++++ .|-.|+|||++..- +..++..|. ..++.++|.. |...+.+++.||+|..
T Consensus 259 tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~--~~vt~i~W~~~d~~~l~s~sKD~tv~q 336 (839)
T KOG0269|consen 259 TINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHT--DSVTGIAWDSGDRINLWSCSKDGTVLQ 336 (839)
T ss_pred EEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccC--ccccceeccCCCceeeEeecCccHHHH
Confidence 4455558999999998865 44444 78899999998643 445555444 4788999976 5567888899988765
Q ss_pred EEcCCh
Q 001477 659 LANSDG 664 (1071)
Q Consensus 659 w~~~~~ 664 (1071)
-.++++
T Consensus 337 h~~kna 342 (839)
T KOG0269|consen 337 HLFKNA 342 (839)
T ss_pred hhhhcc
Confidence 544444
No 146
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.88 E-value=2.2e-20 Score=177.61 Aligned_cols=214 Identities=12% Similarity=0.162 Sum_probs=173.8
Q ss_pred ccCCCCeeEEEECC-CCCEEEEEeCCCeEEEEEecCCCccc------------eeeEeecccCCEEEEEEecCCCceEEE
Q 001477 405 NDAAISVNRCVWGP-DGLMLGVAFSKHIVHLYTYNPTGELR------------QHLEIDAHVGGVNDIAFAHPNKQLCIV 471 (1071)
Q Consensus 405 ~~h~~~v~~~~~sp-d~~~la~~~~dg~i~iwd~~~~~~~~------------~~~~~~~h~~~v~~~~~s~d~~~~~l~ 471 (1071)
..|.+.|+++...+ .|+++++|+.||.|.+||++.....+ ....-.+|.-.|.++.|-|-... ++.
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtG-mFt 118 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTG-MFT 118 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCc-eee
Confidence 45999999999988 68999999999999999998643111 01112368889999999997666 899
Q ss_pred EEeCCCcEEEEEccCCceeEEecCCCCCeEEEEecccCCc-cEEEEEecCCeEEEEEcCCCceeEEecCCCCcEEEEEEc
Q 001477 472 TCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESI-QFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYS 550 (1071)
Q Consensus 472 s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~-~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s 550 (1071)
+++.|.++++||..+-+....|. ..+.|.+-+++|-... -++++|..|-.|++.|+.++.....+.+|...|.++.|+
T Consensus 119 ssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Ws 197 (397)
T KOG4283|consen 119 SSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWS 197 (397)
T ss_pred cccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEec
Confidence 99999999999999988887775 5677888888876542 467778888899999999999999999999999999999
Q ss_pred cCCCEEEEeccCCCCCCeEEEEeCCCC-ceeEEeeccc-------------ccceeEEEEeCCCCEEEEEeCCCcEEEEe
Q 001477 551 ADGTRLFSCGTSKEGESHLVEWNESEG-AIKRTYSGFR-------------KRSLGVVQFDTTRNRFLAAGDEFQIKFWD 616 (1071)
Q Consensus 551 ~~~~~l~~~~~~~d~~~~i~iwd~~~~-~~~~~~~~~~-------------~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 616 (1071)
|...++++.+. .|+.|++||++.. .+...+..|. .+.++.++|+.++.++++.+.|..+++|+
T Consensus 198 p~~e~vLatgs---aDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn 274 (397)
T KOG4283|consen 198 PSSEWVLATGS---ADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWN 274 (397)
T ss_pred cCceeEEEecC---CCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEee
Confidence 99998775443 4889999999864 3333333332 22788999999999999999999999999
Q ss_pred CCCCcee
Q 001477 617 MDNMNML 623 (1071)
Q Consensus 617 ~~~~~~~ 623 (1071)
..+|+..
T Consensus 275 ~~~G~nt 281 (397)
T KOG4283|consen 275 MESGRNT 281 (397)
T ss_pred cccCccc
Confidence 9987643
No 147
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=8.9e-21 Score=191.14 Aligned_cols=247 Identities=11% Similarity=0.140 Sum_probs=191.8
Q ss_pred CCCEEEEEeCCCeEEEEEecCCCccceeeE------------------eecccCCEEEEEEecCCCceEEEEEeCCCcEE
Q 001477 419 DGLMLGVAFSKHIVHLYTYNPTGELRQHLE------------------IDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIK 480 (1071)
Q Consensus 419 d~~~la~~~~dg~i~iwd~~~~~~~~~~~~------------------~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~ 480 (1071)
.|+++|.|+.|..|.|||+.-...+.+... ..+|...|.+++|+..-++ +|++||.|.+|+
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~n-VLaSgsaD~TV~ 269 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRN-VLASGSADKTVK 269 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccce-eEEecCCCceEE
Confidence 367999999999999999864332222212 2368889999999988777 899999999999
Q ss_pred EEEccCCceeEEecCCCCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCceeEEecCCCCcEEEEEEccCCCEEEEec
Q 001477 481 VWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCG 560 (1071)
Q Consensus 481 iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 560 (1071)
+||+.+|++..++..|...|.++.|+|.. ..+|++|+.|+++.+.|.+.....-..-...+.|-.++|.|.....+.++
T Consensus 270 lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~-p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~ 348 (463)
T KOG0270|consen 270 LWDVDTGKPKSSITHHGKKVQTLEWHPYE-PSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVS 348 (463)
T ss_pred EEEcCCCCcceehhhcCCceeEEEecCCC-ceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEe
Confidence 99999999999999999999999999975 48999999999999999995333222222345788999999877666555
Q ss_pred cCCCCCCeEEEEeCCCC-ceeEEeecccccceeEEEEeCCC-CEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceE
Q 001477 561 TSKEGESHLVEWNESEG-AIKRTYSGFRKRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRL 638 (1071)
Q Consensus 561 ~~~d~~~~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~ 638 (1071)
. .+|.++-+|++.. +++.++..|.+ .|.++++++.- ..+++++.|+.|++|++....+.......-......|.
T Consensus 349 t---ddG~v~~~D~R~~~~~vwt~~AHd~-~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~ 424 (463)
T KOG0270|consen 349 T---DDGTVYYFDIRNPGKPVWTLKAHDD-EISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCF 424 (463)
T ss_pred c---CCceEEeeecCCCCCceeEEEeccC-CcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeec
Confidence 4 3899999999964 89999999998 89999999865 56777999999999999865443222211112235677
Q ss_pred EEcCCC-CEEEEEeCCCcEEEEEcCChhhhhhhh
Q 001477 639 RFNKEG-SLLAVTTSDNGIKILANSDGVRLLRML 671 (1071)
Q Consensus 639 ~~s~~~-~~l~~~~~dg~v~iw~~~~~~~~~~~~ 671 (1071)
++.|+- ..++.|+..+.+++||+.+.....+.+
T Consensus 425 ~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~kaF 458 (463)
T KOG0270|consen 425 ALDPDVAFTLAFGGEKAVLRVWDIFTNSPVRKAF 458 (463)
T ss_pred ccCCCcceEEEecCccceEEEeecccChhHHHhh
Confidence 777754 467888888899999998874444443
No 148
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=6.3e-22 Score=212.45 Aligned_cols=248 Identities=12% Similarity=0.199 Sum_probs=196.3
Q ss_pred CeEEEEeecCCCeEEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeEEEECC-CCCEEEEE
Q 001477 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP-DGLMLGVA 426 (1071)
Q Consensus 348 ~V~~~~fsp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~sp-d~~~la~~ 426 (1071)
....|+|+.--..+||+++..|.|.+||+.... . .....++..|+..|+++.|++ ...+|++|
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~--r--------------nk~l~~f~EH~Rs~~~ldfh~tep~iliSG 152 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSI--R--------------NKLLTVFNEHERSANKLDFHSTEPNILISG 152 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccc--c--------------chhhhHhhhhccceeeeeeccCCccEEEec
Confidence 456678886555699999999999999997621 0 111224788999999999998 46689999
Q ss_pred eCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccCC-ceeEEecCCCCCeEEEEe
Q 001477 427 FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG-RKQYTFEGHEAPVYSVCP 505 (1071)
Q Consensus 427 ~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~h~~~v~~i~~ 505 (1071)
|.||+|++||++..+... ++.+....|++++|+|...+ .++++.+.|.+++||++.. ++...+..|.++|.|+.|
T Consensus 153 SQDg~vK~~DlR~~~S~~---t~~~nSESiRDV~fsp~~~~-~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nw 228 (839)
T KOG0269|consen 153 SQDGTVKCWDLRSKKSKS---TFRSNSESIRDVKFSPGYGN-KFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNW 228 (839)
T ss_pred CCCceEEEEeeecccccc---cccccchhhhceeeccCCCc-eEEEecCCceEEEeeccCchhHHHHhhcccCceEEEee
Confidence 999999999999876554 66678889999999997655 8999999999999999864 566788899999999999
Q ss_pred cccCCccEEEEEecCCeEEEEEcCCCceeEEecC-CCCcEEEEEEccCCCE-EEEeccCCCCCCeEEEEeCCCCc-eeEE
Q 001477 506 HHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA-PGNWCTMMAYSADGTR-LFSCGTSKEGESHLVEWNESEGA-IKRT 582 (1071)
Q Consensus 506 ~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~-~~~~i~~~~~s~~~~~-l~~~~~~~d~~~~i~iwd~~~~~-~~~~ 582 (1071)
+|+. .+|++||.|+.|+|||+........... ...++.++.|-|+..+ |++++.- .+-.|+|||++..- +..+
T Consensus 229 hPnr--~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv--~dtsV~VWDvrRPYIP~~t 304 (839)
T KOG0269|consen 229 HPNR--EWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMV--VDTSVHVWDVRRPYIPYAT 304 (839)
T ss_pred cCCC--ceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhcc--ccceEEEEeecccccccee
Confidence 9944 8999999999999999987665544433 3458999999998776 4455432 36779999998654 4567
Q ss_pred eecccccceeEEEEeC-CCCEEEEEeCCCcEEEEeCCCC
Q 001477 583 YSGFRKRSLGVVQFDT-TRNRFLAAGDEFQIKFWDMDNM 620 (1071)
Q Consensus 583 ~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~ 620 (1071)
+..|.. .++.++|.. |...+.+++.||+|..-..++.
T Consensus 305 ~~eH~~-~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 305 FLEHTD-SVTGIAWDSGDRINLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred eeccCc-cccceeccCCCceeeEeecCccHHHHhhhhcc
Confidence 777877 888899975 4456778888888776555543
No 149
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.87 E-value=7.7e-21 Score=199.66 Aligned_cols=291 Identities=18% Similarity=0.224 Sum_probs=211.1
Q ss_pred EEEEeec--CCCeEEEEEcCCCeEEEEecCCCccc-ccccceeecccccccchhhhhcccCCCCeeEEEECCCCCEEEEE
Q 001477 350 MSMDFHP--QQQTILLVGTNVGDISLWEVGSRERL-AHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA 426 (1071)
Q Consensus 350 ~~~~fsp--~g~~lla~gs~dg~i~iwd~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~la~~ 426 (1071)
.+..|++ ..+.+||.+.+||.|.++|.....-. ....|+ ....|...|..+.|-|....|+++
T Consensus 53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk--------------~~~aH~nAifDl~wapge~~lVsa 118 (720)
T KOG0321|consen 53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLK--------------KPLAHKNAIFDLKWAPGESLLVSA 118 (720)
T ss_pred ccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhc--------------ccccccceeEeeccCCCceeEEEc
Confidence 3455654 44568999999999999998754322 111111 145799999999999977789999
Q ss_pred eCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccCCc------------------
Q 001477 427 FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR------------------ 488 (1071)
Q Consensus 427 ~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~------------------ 488 (1071)
+.|.++++||+++++..... .+.||.+.|.+++|.|++.. .|++|+.||.|.|||++-..
T Consensus 119 sGDsT~r~Wdvk~s~l~G~~-~~~GH~~SvkS~cf~~~n~~-vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ 196 (720)
T KOG0321|consen 119 SGDSTIRPWDVKTSRLVGGR-LNLGHTGSVKSECFMPTNPA-VFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTA 196 (720)
T ss_pred cCCceeeeeeeccceeecce-eecccccccchhhhccCCCc-ceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCC
Confidence 99999999999998876643 46799999999999999887 89999999999999986322
Q ss_pred ---------eeEEecCCCCCeEE---EEecccCCccEEEEEec-CCeEEEEEcCCCceeEE--------ecCC---CCcE
Q 001477 489 ---------KQYTFEGHEAPVYS---VCPHHKESIQFIFSTAI-DGKIKAWLYDYLGSRVD--------YDAP---GNWC 544 (1071)
Q Consensus 489 ---------~~~~~~~h~~~v~~---i~~~~~~~~~~l~s~~~-d~~i~vwd~~~~~~~~~--------~~~~---~~~i 544 (1071)
.+.....+...|.+ +.+.. |...|++++. |+.|+|||++....... +..+ ...+
T Consensus 197 ptpskp~~kr~~k~kA~s~ti~ssvTvv~fk--De~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~ 274 (720)
T KOG0321|consen 197 PTPSKPLKKRIRKWKAASNTIFSSVTVVLFK--DESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQ 274 (720)
T ss_pred CCCCchhhccccccccccCceeeeeEEEEEe--ccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeee
Confidence 01111234344444 33333 3478999888 99999999987654331 2222 2367
Q ss_pred EEEEEccCCCEEEEeccCCCCCCeEEEEeCCCC--ceeEEeecccccce-eEEEEeCCCCEEEEEeCCCcEEEEeCCCCc
Q 001477 545 TMMAYSADGTRLFSCGTSKEGESHLVEWNESEG--AIKRTYSGFRKRSL-GVVQFDTTRNRFLAAGDEFQIKFWDMDNMN 621 (1071)
Q Consensus 545 ~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~--~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 621 (1071)
.++.....|.+|++.+. |+.|++|++.+- .++..+.++....+ ..-..+|++.++++|+.|...++|.+.+.+
T Consensus 275 ~nL~lDssGt~L~AsCt----D~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e 350 (720)
T KOG0321|consen 275 VNLILDSSGTYLFASCT----DNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPE 350 (720)
T ss_pred EEEEecCCCCeEEEEec----CCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCcc
Confidence 88888888899887664 788999999853 34445555433222 223468999999999999999999998755
Q ss_pred ee-EEEecCCCCCCcceEEEcC-CCCEEEEEeCCCcEEEEEcCCh
Q 001477 622 ML-TTVDADGGLPASPRLRFNK-EGSLLAVTTSDNGIKILANSDG 664 (1071)
Q Consensus 622 ~~-~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~v~iw~~~~~ 664 (1071)
.- ..+. ++...|++++|.| .-.-++++++|..+++|++.++
T Consensus 351 ~~~~~l~--Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 351 APPALLL--GHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred CChhhhh--CcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 43 3334 3445799999988 3345677799999999999766
No 150
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=1.4e-20 Score=196.09 Aligned_cols=291 Identities=14% Similarity=0.193 Sum_probs=223.1
Q ss_pred eeeEEeec-CCCCeEEEEeecCCCeEEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeEEE
Q 001477 337 KTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCV 415 (1071)
Q Consensus 337 ~~~~~~~~-h~~~V~~~~fsp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~ 415 (1071)
..+-..+. |.+.|.|+...|.|. .||+|+.||+|+||.+.+|.++.+-. -.+.|.|++
T Consensus 390 t~~~lvyrGHtg~Vr~iSvdp~G~-wlasGsdDGtvriWEi~TgRcvr~~~--------------------~d~~I~~va 448 (733)
T KOG0650|consen 390 TRCALVYRGHTGLVRSISVDPSGE-WLASGSDDGTVRIWEIATGRCVRTVQ--------------------FDSEIRSVA 448 (733)
T ss_pred ceeeeeEeccCCeEEEEEecCCcc-eeeecCCCCcEEEEEeecceEEEEEe--------------------ecceeEEEE
Confidence 33444444 999999999999998 79999999999999999999886421 345799999
Q ss_pred ECCCCC--EEEEEeCCCeEEEEEecCC---------------------------------Ccc-ceeeEeecccCCEEEE
Q 001477 416 WGPDGL--MLGVAFSKHIVHLYTYNPT---------------------------------GEL-RQHLEIDAHVGGVNDI 459 (1071)
Q Consensus 416 ~spd~~--~la~~~~dg~i~iwd~~~~---------------------------------~~~-~~~~~~~~h~~~v~~~ 459 (1071)
|+|.++ .||++-.+. +.|-+..-| ... ......-.|...|..+
T Consensus 449 w~P~~~~~vLAvA~~~~-~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~v 527 (733)
T KOG0650|consen 449 WNPLSDLCVLAVAVGEC-VLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQV 527 (733)
T ss_pred ecCCCCceeEEEEecCc-eEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCcccee
Confidence 999766 455543333 444332211 000 0011233588899999
Q ss_pred EEecCCCceEEEEEeCC---CcEEEEEccCCceeEEecCCCCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCceeEE
Q 001477 460 AFAHPNKQLCIVTCGDD---KMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD 536 (1071)
Q Consensus 460 ~~s~d~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~ 536 (1071)
.|+..|. +|++...+ ..|.|+++...+...-|+.-.+.|.++.|+|.. .+|+.++ ...|++||+.....+..
T Consensus 528 tWHrkGD--YlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~--p~lfVaT-q~~vRiYdL~kqelvKk 602 (733)
T KOG0650|consen 528 TWHRKGD--YLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSK--PYLFVAT-QRSVRIYDLSKQELVKK 602 (733)
T ss_pred eeecCCc--eEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCC--ceEEEEe-ccceEEEehhHHHHHHH
Confidence 9999999 77776543 578899998888777777778889999999986 5555554 56899999998777777
Q ss_pred ecCCCCcEEEEEEccCCCEEEEeccCCCCCCeEEEEeCCCC-ceeEEeecccccceeEEEEeCCCCEEEEEeCCCcEEEE
Q 001477 537 YDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG-AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFW 615 (1071)
Q Consensus 537 ~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 615 (1071)
+.....+|..++.+|.|..|+.++. ++.+..+|+.-+ ++.+++..|.. .+++++|++.-.++++|+.||++.|+
T Consensus 603 L~tg~kwiS~msihp~GDnli~gs~----d~k~~WfDldlsskPyk~lr~H~~-avr~Va~H~ryPLfas~sdDgtv~Vf 677 (733)
T KOG0650|consen 603 LLTGSKWISSMSIHPNGDNLILGSY----DKKMCWFDLDLSSKPYKTLRLHEK-AVRSVAFHKRYPLFASGSDDGTVIVF 677 (733)
T ss_pred HhcCCeeeeeeeecCCCCeEEEecC----CCeeEEEEcccCcchhHHhhhhhh-hhhhhhhccccceeeeecCCCcEEEE
Confidence 7777789999999999999999985 778999999754 56777777777 89999999999999999999999998
Q ss_pred eCCC------C---ceeEEEecCCCC--CCcceEEEcCCCCEEEEEeCCCcEEEE
Q 001477 616 DMDN------M---NMLTTVDADGGL--PASPRLRFNKEGSLLAVTTSDNGIKIL 659 (1071)
Q Consensus 616 d~~~------~---~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~~dg~v~iw 659 (1071)
.-.- . -++..+.+|... ..|..+.|+|...+|++++.||+|++|
T Consensus 678 hg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 678 HGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred eeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 6331 1 134555555332 347788899999999999999999998
No 151
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=1.1e-19 Score=174.41 Aligned_cols=255 Identities=13% Similarity=0.195 Sum_probs=194.2
Q ss_pred cccCCCCeeEEEECCCCCEEEEEeCCCeEEEEEecCC-CccceeeEeecccCCEEEEEEecC--CCceEEEEEeCCCcEE
Q 001477 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPT-GELRQHLEIDAHVGGVNDIAFAHP--NKQLCIVTCGDDKMIK 480 (1071)
Q Consensus 404 ~~~h~~~v~~~~~spd~~~la~~~~dg~i~iwd~~~~-~~~~~~~~~~~h~~~v~~~~~s~d--~~~~~l~s~~~d~~i~ 480 (1071)
-.+|.+-|.|+.|.+-|+.+|+|+.|++++|||.+.. .........+.|.+.|..+.|.+- |+ .+++++.|+++.
T Consensus 9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGq--vvA~cS~Drtv~ 86 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQ--VVATCSYDRTVS 86 (361)
T ss_pred ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccc--eEEEEecCCcee
Confidence 4679999999999999999999999999999996443 344555577899999999999653 55 899999999999
Q ss_pred EEEccC------C---ceeEEecCCCCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCceeE------Eec-------
Q 001477 481 VWDVVA------G---RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV------DYD------- 538 (1071)
Q Consensus 481 iwd~~~------~---~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~------~~~------- 538 (1071)
||.-.. + ....++......|+.+.|.|..-|-.+++++.||.+|+|+........ .+.
T Consensus 87 iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~ 166 (361)
T KOG2445|consen 87 IWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPG 166 (361)
T ss_pred eeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcc
Confidence 997521 1 123456677889999999999989999999999999999875543322 111
Q ss_pred CCCCcEEEEEEccC---CCEEEEeccC-CCCCCeEEEEeCCCCc----eeEEeecccccceeEEEEeCCC----CEEEEE
Q 001477 539 APGNWCTMMAYSAD---GTRLFSCGTS-KEGESHLVEWNESEGA----IKRTYSGFRKRSLGVVQFDTTR----NRFLAA 606 (1071)
Q Consensus 539 ~~~~~i~~~~~s~~---~~~l~~~~~~-~d~~~~i~iwd~~~~~----~~~~~~~~~~~~v~~~~~~~~~----~~l~~~ 606 (1071)
.+.....|+.|+|. ..+|+.++.+ ...-+.++||....+. .+.++.++.+ +|+.++|.|+- ..|+++
T Consensus 167 ~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~d-pI~di~wAPn~Gr~y~~lAvA 245 (361)
T KOG2445|consen 167 KNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTD-PIRDISWAPNIGRSYHLLAVA 245 (361)
T ss_pred cccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCC-cceeeeeccccCCceeeEEEe
Confidence 23446789999874 4567777642 1223468888765432 4456777777 99999999974 468889
Q ss_pred eCCCcEEEEeCCCCc-----------------eeEEEe-cCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcC
Q 001477 607 GDEFQIKFWDMDNMN-----------------MLTTVD-ADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANS 662 (1071)
Q Consensus 607 ~~dg~i~iwd~~~~~-----------------~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~ 662 (1071)
+.|| |+||.+.... .+..+. ..+|...|..+.|+-.|..|++.+.||.||+|...
T Consensus 246 ~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 246 TKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred ecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 9999 9999987311 122222 33556689999999999999999999999999753
No 152
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.87 E-value=7.8e-20 Score=182.27 Aligned_cols=303 Identities=17% Similarity=0.223 Sum_probs=220.2
Q ss_pred CCCeEEEEeecCCCeEEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeEEEECCCCCEEEE
Q 001477 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1071)
Q Consensus 346 ~~~V~~~~fsp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~la~ 425 (1071)
..+|..+.|.+++...+|+|+.|..|+||.+..+..-... . ...-...+..|...|+++.|+|+|..||+
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~-~---------~V~y~s~Ls~H~~aVN~vRf~p~gelLAS 82 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGD-M---------KVEYLSSLSRHTRAVNVVRFSPDGELLAS 82 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCc-e---------eEEEeecccCCcceeEEEEEcCCcCeeee
Confidence 5699999999988767999999999999999766543210 0 01112237889999999999999999999
Q ss_pred EeCCCeEEEEEec--------C-----CCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccCCceeEE
Q 001477 426 AFSKHIVHLYTYN--------P-----TGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT 492 (1071)
Q Consensus 426 ~~~dg~i~iwd~~--------~-----~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 492 (1071)
|+.+|.|.+|... + .+.......+.+|...|..++|+|++. ++++++-|..+++||+..|+.+..
T Consensus 83 g~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~--~l~s~s~dns~~l~Dv~~G~l~~~ 160 (434)
T KOG1009|consen 83 GGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN--FLVSGSVDNSVRLWDVHAGQLLAI 160 (434)
T ss_pred cCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc--eeeeeeccceEEEEEeccceeEee
Confidence 9999999999876 2 222333456778999999999999999 899999999999999999999999
Q ss_pred ecCCCCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCceeEEec---------C----------C----CCcEEEEEE
Q 001477 493 FEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD---------A----------P----GNWCTMMAY 549 (1071)
Q Consensus 493 ~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~---------~----------~----~~~i~~~~~ 549 (1071)
+.+|...|..++|.|.. +++++-+.|...+.+.+...+...... . | ..-...++|
T Consensus 161 ~~dh~~yvqgvawDpl~--qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsf 238 (434)
T KOG1009|consen 161 LDDHEHYVQGVAWDPLN--QYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSF 238 (434)
T ss_pred ccccccccceeecchhh--hhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhccc
Confidence 99999999999999876 899999999877776655433222110 0 1 113456889
Q ss_pred ccCCCEEEEeccCCCC-----CCeEEEEeCCC-CceeEEeecccccceeEEEEeCC-----------------CCEEEEE
Q 001477 550 SADGTRLFSCGTSKEG-----ESHLVEWNESE-GAIKRTYSGFRKRSLGVVQFDTT-----------------RNRFLAA 606 (1071)
Q Consensus 550 s~~~~~l~~~~~~~d~-----~~~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~~~~-----------------~~~l~~~ 606 (1071)
+|||..+++.+.--+- .+..++++-.. .++...+.+... ....+.|+|- .+.+++.
T Consensus 239 TPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k-~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfai 317 (434)
T KOG1009|consen 239 TPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKK-PALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAI 317 (434)
T ss_pred CCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCc-ceEEEEeeeeEEEeccccccccccccccceEEEE
Confidence 9999999875431000 22334554331 223333443333 3333444331 1233343
Q ss_pred eCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCh
Q 001477 607 GDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1071)
Q Consensus 607 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~ 664 (1071)
.....|++||.++-+++..... -+...++.++|++||..++..+.||...+..+...
T Consensus 318 At~~svyvydtq~~~P~~~v~n-ihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~ 374 (434)
T KOG1009|consen 318 ATKNSVYVYDTQTLEPLAVVDN-IHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPW 374 (434)
T ss_pred eecceEEEeccccccceEEEee-eeeeeecceeecCCCcEEEEeccCCceEEEEEcch
Confidence 4456899999999888887753 23458999999999999999999999888777655
No 153
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=1.8e-21 Score=219.28 Aligned_cols=251 Identities=15% Similarity=0.269 Sum_probs=207.5
Q ss_pred CCCeeEEEECCCCCE----EEEEeCCCeEEEEEecC---CCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEE
Q 001477 408 AISVNRCVWGPDGLM----LGVAFSKHIVHLYTYNP---TGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIK 480 (1071)
Q Consensus 408 ~~~v~~~~~spd~~~----la~~~~dg~i~iwd~~~---~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~ 480 (1071)
...-+.++|++.|.. ||.|..||.|.+||... +...........|.+.|..+.|++.... +|++|+.||.|.
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~n-lLASGa~~geI~ 142 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGN-LLASGADDGEIL 142 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCc-eeeccCCCCcEE
Confidence 456889999998775 88889999999999876 4444444467789999999999998877 899999999999
Q ss_pred EEEccCCceeEEec--CCCCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCceeEEecCCCC--cEEEEEEccCCCE-
Q 001477 481 VWDVVAGRKQYTFE--GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN--WCTMMAYSADGTR- 555 (1071)
Q Consensus 481 iwd~~~~~~~~~~~--~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~--~i~~~~~s~~~~~- 555 (1071)
|||+...+.-.++. .....|.+++|+.. ..++|++++.+|.+.|||++..+.+..+..+.. .+..++|+|++..
T Consensus 143 iWDlnn~~tP~~~~~~~~~~eI~~lsWNrk-vqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTq 221 (1049)
T KOG0307|consen 143 IWDLNKPETPFTPGSQAPPSEIKCLSWNRK-VSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQ 221 (1049)
T ss_pred EeccCCcCCCCCCCCCCCcccceEeccchh-hhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCcee
Confidence 99998866555442 24678999999864 447899999999999999999988877766554 5789999998764
Q ss_pred EEEeccCCCCCCeEEEEeCCC-CceeEEeecccccceeEEEEeCCC-CEEEEEeCCCcEEEEeCCCCceeEEEecCCCCC
Q 001477 556 LFSCGTSKEGESHLVEWNESE-GAIKRTYSGFRKRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLP 633 (1071)
Q Consensus 556 l~~~~~~~d~~~~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 633 (1071)
+++++ +.|+...|.+||++. ..+++.+.+|.. .|.++.|++.+ .++++++.|+.|.+|+.++++.+..+...+ .
T Consensus 222 l~~As-~dd~~PviqlWDlR~assP~k~~~~H~~-GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~--n 297 (1049)
T KOG0307|consen 222 LLVAS-GDDSAPVIQLWDLRFASSPLKILEGHQR-GILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQG--N 297 (1049)
T ss_pred eeeec-CCCCCceeEeecccccCCchhhhccccc-ceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCC--c
Confidence 44444 446788899999985 457788888887 79999999977 788889999999999999999999998644 3
Q ss_pred CcceEEEcCCC-CEEEEEeCCCcEEEEEcCCh
Q 001477 634 ASPRLRFNKEG-SLLAVTTSDNGIKILANSDG 664 (1071)
Q Consensus 634 ~v~~~~~s~~~-~~l~~~~~dg~v~iw~~~~~ 664 (1071)
.+..+.|+|.. ..+++++-||.|.|+.+.+.
T Consensus 298 W~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 298 WCFDVQWCPRNPSVMAAASFDGKISIYSLQGT 329 (1049)
T ss_pred ceeeeeecCCCcchhhhheeccceeeeeeecC
Confidence 88999999955 48899999999999998765
No 154
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=6e-22 Score=210.79 Aligned_cols=233 Identities=11% Similarity=0.223 Sum_probs=209.6
Q ss_pred CCCCeEEEEeecCCCeEEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeEEEECCCCCEEE
Q 001477 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1071)
Q Consensus 345 h~~~V~~~~fsp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~la 424 (1071)
|...|.|+..-..++ .+++|+.|..+.+|.+..-..+.. +.+|..+|.++.|+++..+|+
T Consensus 27 hsaav~~lk~~~s~r-~~~~Gg~~~k~~L~~i~kp~~i~S-------------------~~~hespIeSl~f~~~E~Lla 86 (825)
T KOG0267|consen 27 HSAAVGCLKIRKSSR-SLVTGGEDEKVNLWAIGKPNAITS-------------------LTGHESPIESLTFDTSERLLA 86 (825)
T ss_pred hhhhhceeeeeccce-eeccCCCceeeccccccCCchhhe-------------------eeccCCcceeeecCcchhhhc
Confidence 677888888866665 899999999999999865443322 789999999999999999999
Q ss_pred EEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccCCceeEEecCCCCCeEEEE
Q 001477 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 504 (1071)
Q Consensus 425 ~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~ 504 (1071)
+|+.+|+|++||++.++.++ +|.+|...+..++|+|-+. +.++|+.|+.+++||++...|.+.+.+|...|..+.
T Consensus 87 agsasgtiK~wDleeAk~vr---tLtgh~~~~~sv~f~P~~~--~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~ 161 (825)
T KOG0267|consen 87 AGSASGTIKVWDLEEAKIVR---TLTGHLLNITSVDFHPYGE--FFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLR 161 (825)
T ss_pred ccccCCceeeeehhhhhhhh---hhhccccCcceeeeccceE--EeccccccccceehhhhccCceeeecCCcceeEEEe
Confidence 99999999999999988777 8889999999999999999 789999999999999998889999999999999999
Q ss_pred ecccCCccEEEEEecCCeEEEEEcCCCceeEEecCCCCcEEEEEEccCCCEEEEeccCCCCCCeEEEEeCCCCceeEEee
Q 001477 505 PHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS 584 (1071)
Q Consensus 505 ~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~ 584 (1071)
|+|++ .++++++.|..+++||+..++....+..|...+..+.|+|..-.++.|+. +.++++||+++.+.+....
T Consensus 162 lsP~G--r~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~----d~tv~f~dletfe~I~s~~ 235 (825)
T KOG0267|consen 162 LSPDG--RWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSS----DRTVRFWDLETFEVISSGK 235 (825)
T ss_pred ecCCC--ceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCC----CceeeeeccceeEEeeccC
Confidence 99865 89999999999999999999999999999999999999999888888875 8889999999998888877
Q ss_pred cccccceeEEEEeCCCCEEEEEeCC
Q 001477 585 GFRKRSLGVVQFDTTRNRFLAAGDE 609 (1071)
Q Consensus 585 ~~~~~~v~~~~~~~~~~~l~~~~~d 609 (1071)
.... .|.+.+|+|++..+++|...
T Consensus 236 ~~~~-~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 236 PETD-GVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred CccC-CceeeeecCCceeeecCchh
Confidence 7655 89999999999999888654
No 155
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.86 E-value=1.6e-19 Score=189.81 Aligned_cols=268 Identities=10% Similarity=0.129 Sum_probs=208.1
Q ss_pred CcceeeccCCCCCCccc------cCCccceeeEEeec-CCCCeEEEEeecCCCeEEEEEcCCCeEEEEecCCCccccccc
Q 001477 314 QSDEVSFAGVAHTPNVY------SQDDLTKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKP 386 (1071)
Q Consensus 314 ~~~~v~~s~~~~~~~~~------~~d~~~~~~~~~~~-h~~~V~~~~fsp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~ 386 (1071)
-+..++|.|||..+.+. ..|...+..+++++ |.+-|.|++||.||+ .+|+|+.|..|.+|+.+-...+.
T Consensus 14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG~llqtLKgHKDtVycVAys~dGk-rFASG~aDK~VI~W~~klEG~Lk--- 89 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGK-RFASGSADKSVIIWTSKLEGILK--- 89 (1081)
T ss_pred chheeEECCCCceEEEecCCEEEEEeCCCcccccccccccceEEEEEEccCCc-eeccCCCceeEEEecccccceee---
Confidence 45669999999987654 34556788899999 999999999999998 68999999999999976433321
Q ss_pred ceeecccccccchhhhhcccCCCCeeEEEECCCCCEEEEEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCC
Q 001477 387 FKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNK 466 (1071)
Q Consensus 387 ~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~ 466 (1071)
..|++.|.|+.|+|-...|++++-+ ..-+|........+. .....|.+++|..||+
T Consensus 90 ------------------YSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~K~-----kss~R~~~CsWtnDGq 145 (1081)
T KOG1538|consen 90 ------------------YSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVSKH-----KSSSRIICCSWTNDGQ 145 (1081)
T ss_pred ------------------eccCCeeeEeecCchHHHhhhcchh-hccccChhhhhHHhh-----hhheeEEEeeecCCCc
Confidence 3599999999999999999999765 356888765433321 2345789999999999
Q ss_pred ceEEEEEeCCCcEEEEEccCCceeEEec---CCCCCeEEEEecccCC---ccEEEEEecCCeEEEEEcCCCceeEEecCC
Q 001477 467 QLCIVTCGDDKMIKVWDVVAGRKQYTFE---GHEAPVYSVCPHHKES---IQFIFSTAIDGKIKAWLYDYLGSRVDYDAP 540 (1071)
Q Consensus 467 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~---~h~~~v~~i~~~~~~~---~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~ 540 (1071)
+++.|-.+|+|.+-+ .+|+....+. |...+|++++|+|... ...++......++.++.++. +.+..-..-
T Consensus 146 --ylalG~~nGTIsiRN-k~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG-~~Igk~r~L 221 (1081)
T KOG1538|consen 146 --YLALGMFNGTISIRN-KNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSG-KQIGKDRAL 221 (1081)
T ss_pred --EEEEeccCceEEeec-CCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecc-eeecccccC
Confidence 899999999999987 5555444333 4788999999998632 25788888888888887652 222222223
Q ss_pred CCcEEEEEEccCCCEEEEeccCCCCCCeEEEEeCCCCceeEEeecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q 001477 541 GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN 619 (1071)
Q Consensus 541 ~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 619 (1071)
+-...|+.+.++|.+++.|+. ++.+.+|- +.|-.+.++... +..|..++..|++++++.|+.||+|-.|++..
T Consensus 222 ~FdP~CisYf~NGEy~LiGGs----dk~L~~fT-R~GvrLGTvg~~-D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 222 NFDPCCISYFTNGEYILLGGS----DKQLSLFT-RDGVRLGTVGEQ-DSWIWTVQAKPNSQYVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred CCCchhheeccCCcEEEEccC----CCceEEEe-ecCeEEeecccc-ceeEEEEEEccCCceEEEEEccCeeehhhhHH
Confidence 335678899999999999986 66788886 447777766553 44899999999999999999999999998753
No 156
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.85 E-value=1.1e-19 Score=175.95 Aligned_cols=290 Identities=17% Similarity=0.276 Sum_probs=213.2
Q ss_pred CCCCeEEEEeec----CCCeEEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeEEEECCC-
Q 001477 345 QGSNVMSMDFHP----QQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD- 419 (1071)
Q Consensus 345 h~~~V~~~~fsp----~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd- 419 (1071)
|+.+|..++|.+ +...++|+.+ ...+.||+......+. .++...-..|...-..++|+-|
T Consensus 37 ~~~~I~gv~fN~~~~~~e~~vfatvG-~~rvtiy~c~~d~~ir--------------~lq~y~D~d~~Esfytcsw~yd~ 101 (385)
T KOG1034|consen 37 HNKPIFGVAFNSFLGCDEPQVFATVG-GNRVTIYECPGDGGIR--------------LLQSYADEDHDESFYTCSWSYDS 101 (385)
T ss_pred CCCccceeeeehhcCCCCCceEEEeC-CcEEEEEEECCcccee--------------eeeeccCCCCCcceEEEEEEecC
Confidence 778999999984 3333566554 5688899876433111 0011111347888899999864
Q ss_pred ---CCEEEEEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccCCceeEEec--
Q 001477 420 ---GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE-- 494 (1071)
Q Consensus 420 ---~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-- 494 (1071)
..++|+|+.-|.|+|.|+.+++... .+.+|...|+.+.|.|+..+ +++++|.|.+|++|++++..++..|.
T Consensus 102 ~~~~p~la~~G~~GvIrVid~~~~~~~~---~~~ghG~sINeik~~p~~~q-lvls~SkD~svRlwnI~~~~Cv~VfGG~ 177 (385)
T KOG1034|consen 102 NTGNPFLAAGGYLGVIRVIDVVSGQCSK---NYRGHGGSINEIKFHPDRPQ-LVLSASKDHSVRLWNIQTDVCVAVFGGV 177 (385)
T ss_pred CCCCeeEEeecceeEEEEEecchhhhcc---ceeccCccchhhhcCCCCCc-EEEEecCCceEEEEeccCCeEEEEeccc
Confidence 3489999999999999999988776 78899999999999999887 89999999999999999999998875
Q ss_pred -CCCCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCceeE----------------------------EecCCCCcEE
Q 001477 495 -GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV----------------------------DYDAPGNWCT 545 (1071)
Q Consensus 495 -~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~----------------------------~~~~~~~~i~ 545 (1071)
+|.+.|.++.|++++ .++++++.|.++++|++...+... ....|...|.
T Consensus 178 egHrdeVLSvD~~~~g--d~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVD 255 (385)
T KOG1034|consen 178 EGHRDEVLSVDFSLDG--DRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVD 255 (385)
T ss_pred ccccCcEEEEEEcCCC--CeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHH
Confidence 599999999999865 799999999999999998432111 1122333444
Q ss_pred EEEEccCCCEEEEeccCCCCCCeEEEEeC-CCCc-------------eeEEeecccccceeEE--EEeCCCCEEEEEeCC
Q 001477 546 MMAYSADGTRLFSCGTSKEGESHLVEWNE-SEGA-------------IKRTYSGFRKRSLGVV--QFDTTRNRFLAAGDE 609 (1071)
Q Consensus 546 ~~~~s~~~~~l~~~~~~~d~~~~i~iwd~-~~~~-------------~~~~~~~~~~~~v~~~--~~~~~~~~l~~~~~d 609 (1071)
|+.|- |+++++-+ .++.|..|.. +-++ .+..+.-... .|.-+ +|.|-++.|+.|...
T Consensus 256 Cvrw~--gd~ilSks----cenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c-~iWfirf~~d~~~~~la~gnq~ 328 (385)
T KOG1034|consen 256 CVRWF--GDFILSKS----CENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMC-DIWFIRFAFDPWQKMLALGNQS 328 (385)
T ss_pred HHHHH--hhheeecc----cCceEEEEecchhhhhhhccCCCccceeeeeEeccCcc-ceEEEEEeecHHHHHHhhccCC
Confidence 44443 46677654 3668999987 2111 1222222221 34444 456667899999999
Q ss_pred CcEEEEeCCCCcee--EEEecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcC
Q 001477 610 FQIKFWDMDNMNML--TTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANS 662 (1071)
Q Consensus 610 g~i~iwd~~~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~ 662 (1071)
|.|++||++..++. .++..+.....|...+|+.||..|+...+|++|.-||..
T Consensus 329 g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 329 GKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred CcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 99999999987663 334444445688999999999999999999999999853
No 157
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.85 E-value=5.2e-20 Score=187.20 Aligned_cols=215 Identities=17% Similarity=0.276 Sum_probs=171.9
Q ss_pred EEEEecccchhhhccccceeEEEecccccCCCCCccceeecceeccCCCCCccccccCCCCCCCCCeEEEEEecCCcEEE
Q 001477 777 RLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVM 856 (1071)
Q Consensus 777 ~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~v~~s~d~~~la 856 (1071)
|++......++++++..++|+|||+.. +++...+++ | ...|++|.++-...+||
T Consensus 84 Cv~~~s~S~y~~sgG~~~~Vkiwdl~~-----------------------kl~hr~lkd--h-~stvt~v~YN~~DeyiA 137 (673)
T KOG4378|consen 84 CVACASQSLYEISGGQSGCVKIWDLRA-----------------------KLIHRFLKD--H-QSTVTYVDYNNTDEYIA 137 (673)
T ss_pred HHhhhhcceeeeccCcCceeeehhhHH-----------------------HHHhhhccC--C-cceeEEEEecCCcceeE
Confidence 344444457899999999999997642 233334666 8 89999999999999999
Q ss_pred EEe-CCeEEEEECCCCeEEEEEeCCCC-CeEEEEEcCCCCCEEEEEeCCCeEEEEEccCCeEEEE-ecCcCCCeeEEEEc
Q 001477 857 SAS-GGKVSLFNMMTFKVMTMFMSPPP-AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK-LKGHQNRITGLAFS 933 (1071)
Q Consensus 857 ~~~-dg~i~vwd~~~~~~~~~~~~~~~-~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~-l~~h~~~v~~l~~s 933 (1071)
+++ .|.|.|..+.++....+|....+ .|.-+.|||....+|.+++++|.|.+||+....++.. ...|+.+...|+|+
T Consensus 138 svs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfs 217 (673)
T KOG4378|consen 138 SVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFS 217 (673)
T ss_pred EeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceec
Confidence 999 78999999999888888876544 4668999996667888999999999999998776554 46899999999999
Q ss_pred CC-CCEEEEEeCCCcEEEEECCCCceeeeeeecCCCCCCCCCCCceEEEEccCCCEEEEE-ECCeEEEEeC--CCCceee
Q 001477 934 PT-LNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQISVYDS--KLECSRS 1009 (1071)
Q Consensus 934 ~d-~~~l~s~~~d~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d~~i~vwd~--~~~~~~~ 1009 (1071)
|. ..+|++.|.|+.|.+||+...+........ .+.+.++|+++|.+|++| ..|.|..||+ ....+..
T Consensus 218 psne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~---------~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v 288 (673)
T KOG4378|consen 218 PSNEALLVSVGYDKKINIYDIRSQASTDRLTYS---------HPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAV 288 (673)
T ss_pred CCccceEEEecccceEEEeecccccccceeeec---------CCcceeeecCCceEEEeecCCceEEEEecccCCCCceE
Confidence 95 468899999999999999976544333222 457899999999999997 5899999999 4444444
Q ss_pred cCCCCCCCCCeeEEEEecCC
Q 001477 1010 WSPKDALPAPISSAIYSCDG 1029 (1071)
Q Consensus 1010 ~~~~~~h~~~v~~~~~s~dg 1029 (1071)
+ +.|...|++++|-+..
T Consensus 289 ~---sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 289 R---SAHDASVTRVAFQPSP 305 (673)
T ss_pred e---eecccceeEEEeeecc
Confidence 4 4568889999998775
No 158
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=4.8e-19 Score=170.09 Aligned_cols=253 Identities=12% Similarity=0.210 Sum_probs=191.4
Q ss_pred CCCCeEEEEeecCCCeEEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeEEEECC--CCCE
Q 001477 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP--DGLM 422 (1071)
Q Consensus 345 h~~~V~~~~fsp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~sp--d~~~ 422 (1071)
|.+-|.|+.|.+.|++ +|+|+.|++|+|||....... |..+. ..+.|.+.|..+.|.+ =|+.
T Consensus 12 h~DlihdVs~D~~GRR-mAtCSsDq~vkI~d~~~~s~~-------W~~Ts--------~Wrah~~Si~rV~WAhPEfGqv 75 (361)
T KOG2445|consen 12 HKDLIHDVSFDFYGRR-MATCSSDQTVKIWDSTSDSGT-------WSCTS--------SWRAHDGSIWRVVWAHPEFGQV 75 (361)
T ss_pred CcceeeeeeecccCce-eeeccCCCcEEEEeccCCCCc-------eEEee--------eEEecCCcEEEEEecCccccce
Confidence 6788999999999996 689999999999997544321 11111 1457999999999986 5899
Q ss_pred EEEEeCCCeEEEEEecC------CCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccCCce------e
Q 001477 423 LGVAFSKHIVHLYTYNP------TGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK------Q 490 (1071)
Q Consensus 423 la~~~~dg~i~iwd~~~------~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~------~ 490 (1071)
+|+++.|+++.||.-.. +.......++......|+++.|.|....+.+++++.||.++||+.-..-. .
T Consensus 76 vA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq 155 (361)
T KOG2445|consen 76 VATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQ 155 (361)
T ss_pred EEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhh
Confidence 99999999999998621 12233445677778899999999988888999999999999998765322 2
Q ss_pred EEec-------CCCCCeEEEEecccCC-ccEEEEEecC-----CeEEEEEcCCCce----eEEecCCCCcEEEEEEccCC
Q 001477 491 YTFE-------GHEAPVYSVCPHHKES-IQFIFSTAID-----GKIKAWLYDYLGS----RVDYDAPGNWCTMMAYSADG 553 (1071)
Q Consensus 491 ~~~~-------~h~~~v~~i~~~~~~~-~~~l~s~~~d-----~~i~vwd~~~~~~----~~~~~~~~~~i~~~~~s~~~ 553 (1071)
+.++ .+..+..|+.|+|..- ..+|+.|+.+ +.+++|....... ...+..+..+|+.++|.|+-
T Consensus 156 ~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~ 235 (361)
T KOG2445|consen 156 HEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNI 235 (361)
T ss_pred hhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeecccc
Confidence 2332 4677888999987642 2567777665 4788998766553 23567888999999999953
Q ss_pred ----CEEEEeccCCCCCCeEEEEeCCCC--------------------ceeEEeecccccceeEEEEeCCCCEEEEEeCC
Q 001477 554 ----TRLFSCGTSKEGESHLVEWNESEG--------------------AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE 609 (1071)
Q Consensus 554 ----~~l~~~~~~~d~~~~i~iwd~~~~--------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 609 (1071)
..|++++ +|| |+||.+... +.+..+..|.. .|..+.|+-.|..|.+.|.|
T Consensus 236 Gr~y~~lAvA~----kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~-~VWrv~wNmtGtiLsStGdD 309 (361)
T KOG2445|consen 236 GRSYHLLAVAT----KDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNG-EVWRVRWNMTGTILSSTGDD 309 (361)
T ss_pred CCceeeEEEee----cCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCC-ceEEEEEeeeeeEEeecCCC
Confidence 3456665 366 999998731 13344666766 89999999999999999999
Q ss_pred CcEEEEeCCC
Q 001477 610 FQIKFWDMDN 619 (1071)
Q Consensus 610 g~i~iwd~~~ 619 (1071)
|.|++|...-
T Consensus 310 G~VRLWkany 319 (361)
T KOG2445|consen 310 GCVRLWKANY 319 (361)
T ss_pred ceeeehhhhh
Confidence 9999998764
No 159
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.85 E-value=2e-19 Score=173.54 Aligned_cols=289 Identities=13% Similarity=0.186 Sum_probs=209.8
Q ss_pred CeEEEEeecCCCeEEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeEEEEC-------CCC
Q 001477 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG-------PDG 420 (1071)
Q Consensus 348 ~V~~~~fsp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~s-------pd~ 420 (1071)
-...+.|||||. -+.+-+.|..+.+|++...-.-....-.+ ..+....+-......|...+|- |+.
T Consensus 51 f~kgckWSPDGS-ciL~~sedn~l~~~nlP~dlys~~~~~~~------~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t 123 (406)
T KOG2919|consen 51 FLKGCKWSPDGS-CILSLSEDNCLNCWNLPFDLYSKKADGPL------NFSKHLSYRYQEGETVYDYCWYSRMKSDQPST 123 (406)
T ss_pred hhccceeCCCCc-eEEeecccCeeeEEecChhhcccCCCCcc------ccccceeEEeccCCEEEEEEeeeccccCCCcc
Confidence 345789999998 45667899999999985321100000000 0000111111234567777774 677
Q ss_pred CEEEEEeCCCeEEEEEecCCCccceeeEeecccC---CEEEEEEecCCCceEEEEEeCCCcEEEEEc-cCCcee--EEe-
Q 001477 421 LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVG---GVNDIAFAHPNKQLCIVTCGDDKMIKVWDV-VAGRKQ--YTF- 493 (1071)
Q Consensus 421 ~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~---~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~-~~~~~~--~~~- 493 (1071)
.++|+.+.+.-|++||.-+|+.......+ .|.. ...+++|+|||. .|+ ++..+.|+++|+ +.|+.- +..
T Consensus 124 ~l~a~ssr~~PIh~wdaftG~lraSy~~y-dh~de~taAhsL~Fs~DGe--qlf-aGykrcirvFdt~RpGr~c~vy~t~ 199 (406)
T KOG2919|consen 124 NLFAVSSRDQPIHLWDAFTGKLRASYRAY-DHQDEYTAAHSLQFSPDGE--QLF-AGYKRCIRVFDTSRPGRDCPVYTTV 199 (406)
T ss_pred ceeeeccccCceeeeeccccccccchhhh-hhHHhhhhheeEEecCCCC--eEe-ecccceEEEeeccCCCCCCcchhhh
Confidence 89999999999999999998765433222 3443 356899999999 455 456889999999 555432 111
Q ss_pred ----cCCCCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCceeEEecCCCCcEEEEEEccCCCEEEEeccCCCCCCeE
Q 001477 494 ----EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHL 569 (1071)
Q Consensus 494 ----~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i 569 (1071)
.+..+-+.+++|+|... ..++.++...++-+|.-...++...+.+|.+.|+.++|.++|+.|++++. .+..|
T Consensus 200 ~~~k~gq~giisc~a~sP~~~-~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaR---k~dkI 275 (406)
T KOG2919|consen 200 TKGKFGQKGIISCFAFSPMDS-KTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGAR---KDDKI 275 (406)
T ss_pred hcccccccceeeeeeccCCCC-cceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeeccccc---CCCeE
Confidence 13467788999999753 68999999999999988888888889999999999999999999999986 56779
Q ss_pred EEEeCCC-CceeEEeecccccceeE--EEEeCCCCEEEEEeCCCcEEEEeCCC-CceeEEEecCCCCCCcceEEEcCCCC
Q 001477 570 VEWNESE-GAIKRTYSGFRKRSLGV--VQFDTTRNRFLAAGDEFQIKFWDMDN-MNMLTTVDADGGLPASPRLRFNKEGS 645 (1071)
Q Consensus 570 ~iwd~~~-~~~~~~~~~~~~~~v~~--~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~ 645 (1071)
..||++. +.++..+..|....-.. ....|++++|++|+.||.|++||+++ +..+..+..+. ..++.++++|--.
T Consensus 276 l~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~s--d~vNgvslnP~mp 353 (406)
T KOG2919|consen 276 LCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYS--DTVNGVSLNPIMP 353 (406)
T ss_pred EEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccccccc--ccccceecCcccc
Confidence 9999985 45666666665422223 34568899999999999999999998 77666665544 3789999999988
Q ss_pred EEEEEeCC
Q 001477 646 LLAVTTSD 653 (1071)
Q Consensus 646 ~l~~~~~d 653 (1071)
++++++..
T Consensus 354 ilatssGq 361 (406)
T KOG2919|consen 354 ILATSSGQ 361 (406)
T ss_pred eeeeccCc
Confidence 88887765
No 160
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.84 E-value=4.5e-17 Score=188.60 Aligned_cols=371 Identities=23% Similarity=0.416 Sum_probs=283.3
Q ss_pred cccCCCCeeEEEECCCCCEEEEEeCCCeEEEEEecCCC-ccceeeEeeccc-CCEEEEEE-ecCCCceEEEE-EeCCCcE
Q 001477 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTG-ELRQHLEIDAHV-GGVNDIAF-AHPNKQLCIVT-CGDDKMI 479 (1071)
Q Consensus 404 ~~~h~~~v~~~~~spd~~~la~~~~dg~i~iwd~~~~~-~~~~~~~~~~h~-~~v~~~~~-s~d~~~~~l~s-~~~d~~i 479 (1071)
...|...+.++.+.+++..++.++.|+.+.+|+...+. ... .+.++. ..+..+.+ ++++.. .++. +..|+.+
T Consensus 61 ~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~ 136 (466)
T COG2319 61 LRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIK---SLEGLHDSSVSKLALSSPDGNS-ILLASSSLDGTV 136 (466)
T ss_pred eeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEE---EEeccCCCceeeEEEECCCcce-EEeccCCCCccE
Confidence 45689999999999999999999999999999998875 333 444433 36777777 777763 3444 4459999
Q ss_pred EEEEccC-CceeEEecCCCCCeEEEEecccCCccEEEEEec-CCeEEEEEcCCCceeEEecCCCCcEEEEEEccCCC-EE
Q 001477 480 KVWDVVA-GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI-DGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGT-RL 556 (1071)
Q Consensus 480 ~iwd~~~-~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~-d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l 556 (1071)
.+||... ......+..|...|..++|+|++ ..+++++. |+.+++|+.........+..|...+.+++|+|++. .+
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 214 (466)
T COG2319 137 KLWDLSTPGKLIRTLEGHSESVTSLAFSPDG--KLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLI 214 (466)
T ss_pred EEEEecCCCeEEEEEecCcccEEEEEECCCC--CEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEE
Confidence 9999988 78888899999999999999876 57888875 99999999998777888888999999999999998 44
Q ss_pred EEeccCCCCCCeEEEEeCCCCceeE-EeecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCCce-eEEEecCCCCCC
Q 001477 557 FSCGTSKEGESHLVEWNESEGAIKR-TYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM-LTTVDADGGLPA 634 (1071)
Q Consensus 557 ~~~~~~~d~~~~i~iwd~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~ 634 (1071)
++++ .++.+.+||...+.... .+.+|.. .. ...|++++..+++++.|+.+++|+...... +..+. .+...
T Consensus 215 ~~~~----~d~~i~~wd~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~--~~~~~ 286 (466)
T COG2319 215 ASGS----SDGTIRLWDLSTGKLLRSTLSGHSD-SV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLS--GHSSS 286 (466)
T ss_pred EEec----CCCcEEEEECCCCcEEeeecCCCCc-ce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEe--cCCcc
Confidence 4434 37789999998888877 6777776 33 338999998899999999999999997665 44443 33458
Q ss_pred cceEEEcCCCCEEEEEeCCCcEEEEEcCChhhhhhhhcCCccccccCCCCCCCCCCccccccCCCCccccccCCCCCCCC
Q 001477 635 SPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPD 714 (1071)
Q Consensus 635 v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 714 (1071)
+.++.|+|++..+++++.|+.+.+|+..+... ...
T Consensus 287 v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~-------------------------------------------- 321 (466)
T COG2319 287 VLSVAFSPDGKLLASGSSDGTVRLWDLETGKL-LSS-------------------------------------------- 321 (466)
T ss_pred EEEEEECCCCCEEEEeeCCCcEEEEEcCCCce-EEE--------------------------------------------
Confidence 89999999888888888898899997654400 000
Q ss_pred CCCCcccccccCCCCcccccccccccccccCccceeccCCCCCcccceeeecCCCcCCCceEEEEEecccchhhhccccc
Q 001477 715 RGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNA 794 (1071)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~~~~~dg 794 (1071)
..
T Consensus 322 ---------------------------------------------------------------~~--------------- 323 (466)
T COG2319 322 ---------------------------------------------------------------LT--------------- 323 (466)
T ss_pred ---------------------------------------------------------------ee---------------
Confidence 00
Q ss_pred eeEEEecccccCCCCCccceeecceeccCCCCCccccccCCCCCCCCCeEEEEEecCCcEEEEE-e-CCeEEEEECCCCe
Q 001477 795 VHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSA-S-GGKVSLFNMMTFK 872 (1071)
Q Consensus 795 ~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~v~~s~d~~~la~~-~-dg~i~vwd~~~~~ 872 (1071)
.. .| ...+..+.+.+++..++.+ . |+.+.+|+.....
T Consensus 324 --------------------------------------~~--~~-~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 362 (466)
T COG2319 324 --------------------------------------LK--GH-EGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK 362 (466)
T ss_pred --------------------------------------ec--cc-CCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc
Confidence 00 02 3345566663232455554 3 7778888888776
Q ss_pred EEEEEeCCCCCeEEEEEcCCCCCEEEE-EeCCCeEEEEEccCCeEEEEecCcCCCeeEEEEcCCCCEEEEEeCCCcEEEE
Q 001477 873 VMTMFMSPPPAATFLAFHPQDNNIIAI-GMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMW 951 (1071)
Q Consensus 873 ~~~~~~~~~~~i~~l~~sp~~~~~la~-g~~dg~v~vwd~~~~~~~~~l~~h~~~v~~l~~s~d~~~l~s~~~d~~v~vW 951 (1071)
......... .+..+.+++ + ..++. +..++.+.+|+............+...+....+++++..+++++.++.+++|
T Consensus 363 ~~~~~~~~~-~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (466)
T COG2319 363 PLKTLEGHS-NVLSVSFSP-D-GRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLW 439 (466)
T ss_pred eeEEecCCc-eEEEEEECC-C-CCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEE
Confidence 322232222 288999999 7 55554 8899999999999988777776554779999999999999999999999999
Q ss_pred ECCC
Q 001477 952 SIDK 955 (1071)
Q Consensus 952 d~~~ 955 (1071)
++..
T Consensus 440 ~~~~ 443 (466)
T COG2319 440 DLKT 443 (466)
T ss_pred eccC
Confidence 9988
No 161
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.84 E-value=2.5e-19 Score=181.24 Aligned_cols=209 Identities=15% Similarity=0.210 Sum_probs=167.8
Q ss_pred EeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccCC----ceeEEecCCCCCeEEEEecccCCccEEEEEecCCeE
Q 001477 448 EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG----RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKI 523 (1071)
Q Consensus 448 ~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~----~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i 523 (1071)
...-+.++|++++|+|....-++++|..-|.|-+||+.+. ..+..+..|.++|.++.|+|... ..+++.|.||+|
T Consensus 181 v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~-s~i~ssSyDGti 259 (498)
T KOG4328|consen 181 VAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANT-SQIYSSSYDGTI 259 (498)
T ss_pred eeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCCh-hheeeeccCcee
Confidence 4556889999999999877448999999999999999532 23567788999999999999765 789999999999
Q ss_pred EEEEcCCCceeEEecC--CCCcEEEEEEccCCCEEEEeccCCCCCCeEEEEeCCCCce-eEEeecccccceeEEEEeCCC
Q 001477 524 KAWLYDYLGSRVDYDA--PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI-KRTYSGFRKRSLGVVQFDTTR 600 (1071)
Q Consensus 524 ~vwd~~~~~~~~~~~~--~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~ 600 (1071)
++-|++.......+.. ....+..+.|+.+...++.+.. -|.+.+||.+++.. ...+..|.. .|++++++|..
T Consensus 260 R~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~----~G~f~~iD~R~~~s~~~~~~lh~k-KI~sv~~NP~~ 334 (498)
T KOG4328|consen 260 RLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDN----VGNFNVIDLRTDGSEYENLRLHKK-KITSVALNPVC 334 (498)
T ss_pred eeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeec----ccceEEEEeecCCccchhhhhhhc-ccceeecCCCC
Confidence 9999987665544444 5567888999988888887753 45789999997654 556666766 89999999976
Q ss_pred C-EEEEEeCCCcEEEEeCCCCceeE--EEecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcC
Q 001477 601 N-RFLAAGDEFQIKFWDMDNMNMLT--TVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANS 662 (1071)
Q Consensus 601 ~-~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~ 662 (1071)
. +++++|.|++.+|||++...... .+..-.|...|.++.|||.+..|++.+.|..|+|||..
T Consensus 335 p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 335 PWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSS 399 (498)
T ss_pred chheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecc
Confidence 4 57779999999999998643222 24333455689999999988889999999999999963
No 162
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.84 E-value=3.2e-19 Score=172.37 Aligned_cols=408 Identities=12% Similarity=0.132 Sum_probs=257.9
Q ss_pred EEEECCCCCEEEEEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccCCceeEE
Q 001477 413 RCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT 492 (1071)
Q Consensus 413 ~~~~spd~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 492 (1071)
-+.|||+|+++|+++.- .+.|-|.++-+..... .--..|..+.|..|... .|.....|+.|.+|++...+-...
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf----~cldki~yieW~ads~~-ilC~~yk~~~vqvwsl~Qpew~ck 86 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLF----LCLDKIVYIEWKADSCH-ILCVAYKDPKVQVWSLVQPEWYCK 86 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHH----HHHHHhhheeeecccee-eeeeeeccceEEEEEeecceeEEE
Confidence 46899999999999665 7778887775443311 12346888999988875 566778899999999999988888
Q ss_pred ecCCCCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCceeEEecCCCCcEEEEEEccCCCEEEEeccCCCCCCeEEEE
Q 001477 493 FEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEW 572 (1071)
Q Consensus 493 ~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iw 572 (1071)
+.....++.+++|+|++. .+|.+...|-.|.+|.+.+..... +.-....+..++|+|||++.+.++. +|-...+.+.
T Consensus 87 Ideg~agls~~~WSPdgr-hiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~~dg~f~ai~sR-rDCkdyv~i~ 163 (447)
T KOG4497|consen 87 IDEGQAGLSSISWSPDGR-HILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAFHPDGQFCAILSR-RDCKDYVQIS 163 (447)
T ss_pred eccCCCcceeeeECCCcc-eEeeeecceeEEEEEEeccceeEE-ecccccCceeEEECCCCceeeeeec-ccHHHHHHHH
Confidence 888899999999999764 678888889999999998765543 2333445688999999999998764 1211223233
Q ss_pred eCCCCceeEEeecccccceeEEEEeCCCCEEEEEe--CCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEE
Q 001477 573 NESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG--DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVT 650 (1071)
Q Consensus 573 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 650 (1071)
.-+....++.+..... ..+.+.|+|||+.++.-. -+-.|+.|... -.+..+.|+|.+++|++|
T Consensus 164 ~c~~W~ll~~f~~dT~-DltgieWsPdg~~laVwd~~Leykv~aYe~~--------------lG~k~v~wsP~~qflavG 228 (447)
T KOG4497|consen 164 SCKAWILLKEFKLDTI-DLTGIEWSPDGNWLAVWDNVLEYKVYAYERG--------------LGLKFVEWSPCNQFLAVG 228 (447)
T ss_pred hhHHHHHHHhcCCCcc-cccCceECCCCcEEEEecchhhheeeeeeec--------------cceeEEEeccccceEEee
Confidence 2233445555555544 567799999998877532 22223322211 146789999999999999
Q ss_pred eCCCcEEEEEcCChhhhhhhhcCCccccccCCCCCCCCCCccccccCCCCccccccCCCCCCCCCCCCcccccccCCCCc
Q 001477 651 TSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDG 730 (1071)
Q Consensus 651 ~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 730 (1071)
+.|+.+|+.+--+- +.+..+. |...+
T Consensus 229 syD~~lrvlnh~tW-k~f~efl-hl~s~---------------------------------------------------- 254 (447)
T KOG4497|consen 229 SYDQMLRVLNHFTW-KPFGEFL-HLCSY---------------------------------------------------- 254 (447)
T ss_pred ccchhhhhhceeee-eehhhhc-cchhc----------------------------------------------------
Confidence 99999998764332 1111110 00000
Q ss_pred ccccccccccccccCccceeccCCCCCcccceeeecCCCcCCCceEEEEEecccchhhhccccceeEEEecccccCCCCC
Q 001477 731 SRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSG 810 (1071)
Q Consensus 731 ~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~g 810 (1071)
.|.+..+-..+.. .. -.-...++.|.|..--.-..-... .+|....
T Consensus 255 ------------~dp~~~~~~ke~~------~~-------~ql~~~cLsf~p~~~~a~~~~~se--~~YE~~~------- 300 (447)
T KOG4497|consen 255 ------------HDPTLHLLEKETF------SI-------VQLLHHCLSFTPTDLEAHIWEESE--TIYEQQM------- 300 (447)
T ss_pred ------------cCchhhhhhhhhc------ch-------hhhcccccccCCCccccCccccch--hhhhhhh-------
Confidence 0000000000000 00 001113444444321100000000 0000000
Q ss_pred ccceeecceeccCCCCCccccccCCCCCCCCCeEEEEEecCCcEEEEEeC---CeEEEEECCCCeEEEEEeCCCCCeEEE
Q 001477 811 KATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASG---GKVSLFNMMTFKVMTMFMSPPPAATFL 887 (1071)
Q Consensus 811 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~v~~s~d~~~la~~~d---g~i~vwd~~~~~~~~~~~~~~~~i~~l 887 (1071)
..+.+ ..-++.. +++. . .-.+.-++||+|..++|+-.| +.+.+||++..++...+. ...+|.+.
T Consensus 301 -----~pv~~---~~lkp~t-D~pn--P-k~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf 367 (447)
T KOG4497|consen 301 -----TPVKV---HKLKPPT-DFPN--P-KCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAF 367 (447)
T ss_pred -----cceee---ecccCCC-CCCC--c-ccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEE
Confidence 00000 0000000 1111 2 456788999999999999975 679999998877655543 45689999
Q ss_pred EEcCCCCCEEEEEeCCCeEEEEEccCCeEEEEecCcCCCeeEEEEcCCCCEEEEEeCCCc
Q 001477 888 AFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQ 947 (1071)
Q Consensus 888 ~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~~~v~~l~~s~d~~~l~s~~~d~~ 947 (1071)
.|.| +...|+.+.....+++|.......+..-. ..-.|..+.|.-+|..++-++.|.-
T Consensus 368 ~WdP-~~prL~vctg~srLY~W~psg~~~V~vP~-~GF~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 368 EWDP-GRPRLVVCTGKSRLYFWAPSGPRVVGVPK-KGFNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred EeCC-CCceEEEEcCCceEEEEcCCCceEEecCC-CCceeeeEEecCCCcEEEEEcCCce
Confidence 9999 77777777777789999877655555433 3467999999999999999999863
No 163
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.84 E-value=2.1e-19 Score=177.14 Aligned_cols=268 Identities=13% Similarity=0.200 Sum_probs=192.2
Q ss_pred ceeeEEeecCCCCeEEEEeecCCC-eEEEEEcCCCeEEEEecCCCcc-cccccceeecccccccchhhhhcccCCCCeeE
Q 001477 336 TKTVVRTLNQGSNVMSMDFHPQQQ-TILLVGTNVGDISLWEVGSRER-LAHKPFKVWDISAASMPLQNALLNDAAISVNR 413 (1071)
Q Consensus 336 ~~~~~~~~~h~~~V~~~~fsp~g~-~lla~gs~dg~i~iwd~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~ 413 (1071)
|......+.|.+.++.+.-++-|+ .++|+=+..|.|.||++...-. +......+-+ ....+...+.+|...=+.
T Consensus 141 P~~~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~----s~~~Pl~t~~ghk~EGy~ 216 (440)
T KOG0302|consen 141 PQIEMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKD----SEFRPLFTFNGHKGEGYG 216 (440)
T ss_pred ccccccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccc----cccCceEEecccCcccee
Confidence 444556666888899998888764 3556668889999999854311 1111111111 112233346789999999
Q ss_pred EEECCC-CCEEEEEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccCC---ce
Q 001477 414 CVWGPD-GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG---RK 489 (1071)
Q Consensus 414 ~~~spd-~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~---~~ 489 (1071)
++|||- ...|++|..-+.|++|...+|.-......+.+|...|-.++|||..+. +|++||.||+|+|||++.+ .+
T Consensus 217 LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~-vfaScS~DgsIrIWDiRs~~~~~~ 295 (440)
T KOG0302|consen 217 LDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDG-VFASCSCDGSIRIWDIRSGPKKAA 295 (440)
T ss_pred eecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCc-eEEeeecCceEEEEEecCCCccce
Confidence 999993 234778878889999999987644444466789999999999998887 8999999999999999988 34
Q ss_pred eEEecCCCCCeEEEEecccCCccEEEEEecCCeEEEEEcCCC---ceeEEecCCCCcEEEEEEccCCCEEEEeccCCCCC
Q 001477 490 QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL---GSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGE 566 (1071)
Q Consensus 490 ~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~---~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~ 566 (1071)
+.+ +.|.+.|+-|.|+... .+|++|+.||+++|||++.. +.+..++.|..+|+++.|+|.....+.++. .|
T Consensus 296 ~~~-kAh~sDVNVISWnr~~--~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg---~D 369 (440)
T KOG0302|consen 296 VST-KAHNSDVNVISWNRRE--PLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASG---ED 369 (440)
T ss_pred eEe-eccCCceeeEEccCCc--ceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEecc---CC
Confidence 444 7899999999999765 59999999999999999864 456688899999999999996655443332 38
Q ss_pred CeEEEEeCCCCc----------------eeEEeecc-cccceeEEEEeCCC-CEEEEEeCCCcEEEE
Q 001477 567 SHLVEWNESEGA----------------IKRTYSGF-RKRSLGVVQFDTTR-NRFLAAGDEFQIKFW 615 (1071)
Q Consensus 567 ~~i~iwd~~~~~----------------~~~~~~~~-~~~~v~~~~~~~~~-~~l~~~~~dg~i~iw 615 (1071)
.+|.+||+.... +.+.+-.| ....+..+.|++.- .++++.+.|| +.||
T Consensus 370 ~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 370 NQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVF 435 (440)
T ss_pred CcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEE
Confidence 889999985311 01111122 22256778888764 4666777776 3444
No 164
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.84 E-value=8.9e-19 Score=169.74 Aligned_cols=337 Identities=15% Similarity=0.212 Sum_probs=227.0
Q ss_pred hcccCCCCeeEEEECC----C-CCEEEEEeCCCeEEEEEecCCCccceeeEee--cccCCEEEEEEecCCC--ceEEEEE
Q 001477 403 LLNDAAISVNRCVWGP----D-GLMLGVAFSKHIVHLYTYNPTGELRQHLEID--AHVGGVNDIAFAHPNK--QLCIVTC 473 (1071)
Q Consensus 403 ~~~~h~~~v~~~~~sp----d-~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~--~h~~~v~~~~~s~d~~--~~~l~s~ 473 (1071)
+..+|+.+|..++|++ + -..+|+++ ...+.+|.......++....+. .|......++|+-|.. ..++|.|
T Consensus 33 l~ed~~~~I~gv~fN~~~~~~e~~vfatvG-~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~ 111 (385)
T KOG1034|consen 33 LKEDHNKPIFGVAFNSFLGCDEPQVFATVG-GNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAG 111 (385)
T ss_pred hhccCCCccceeeeehhcCCCCCceEEEeC-CcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEee
Confidence 3567899999999985 2 23555554 4578999987765443322222 4777888999987643 3488999
Q ss_pred eCCCcEEEEEccCCceeEEecCCCCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCceeEEe---cCCCCcEEEEEEc
Q 001477 474 GDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY---DAPGNWCTMMAYS 550 (1071)
Q Consensus 474 ~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~---~~~~~~i~~~~~s 550 (1071)
|.-|.|+|.|+.++++...+.+|...|+.+.+.|... ++++++|.|..||+|++++..++..+ .+|...|.++.|+
T Consensus 112 G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~-qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~ 190 (385)
T KOG1034|consen 112 GYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRP-QLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFS 190 (385)
T ss_pred cceeEEEEEecchhhhccceeccCccchhhhcCCCCC-cEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEc
Confidence 9999999999999999999999999999999999754 89999999999999999999998876 4678899999999
Q ss_pred cCCCEEEEeccCCCCCCeEEEEeCCCCceeEEeecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCC
Q 001477 551 ADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG 630 (1071)
Q Consensus 551 ~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 630 (1071)
++|.++++++. |.++.+|++...+....++. +..|+|++...=.-. -...+.+.. +-. -
T Consensus 191 ~~gd~i~ScGm----Dhslk~W~l~~~~f~~~lE~-------s~~~~~~~t~~pfpt--~~~~fp~fs------t~d--i 249 (385)
T KOG1034|consen 191 LDGDRIASCGM----DHSLKLWRLNVKEFKNKLEL-------SITYSPNKTTRPFPT--PKTHFPDFS------TTD--I 249 (385)
T ss_pred CCCCeeeccCC----cceEEEEecChhHHhhhhhh-------hcccCCCCccCcCCc--ccccccccc------ccc--c
Confidence 99999999987 78899999985543322221 244666543211000 011122211 112 2
Q ss_pred CCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCChhhhhhhhcCCccccccCCCCCCCCCCccccccCCCCccccccCCCC
Q 001477 631 GLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTL 710 (1071)
Q Consensus 631 ~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 710 (1071)
|...|-|+.|- |+++++-+-++.|..|....-.+.+.........
T Consensus 250 HrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~--------------------------------- 294 (385)
T KOG1034|consen 250 HRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESA--------------------------------- 294 (385)
T ss_pred ccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccc---------------------------------
Confidence 33467788876 5788998889999999863221111111000000
Q ss_pred CCCCCCCCcccccccCCCCcccccccccccccccCccceeccCCCCCcccceeeecCCCcCCCceEEEEEecccchhhhc
Q 001477 711 ERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLAL 790 (1071)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~~~ 790 (1071)
......+.++. -.-.-...+|.|-++.|+.+
T Consensus 295 -----------------------------------------------~Ti~~~~~~~~--c~iWfirf~~d~~~~~la~g 325 (385)
T KOG1034|consen 295 -----------------------------------------------TTILGEFDYPM--CDIWFIRFAFDPWQKMLALG 325 (385)
T ss_pred -----------------------------------------------eeeeeEeccCc--cceEEEEEeecHHHHHHhhc
Confidence 00000111111 11222345677889999999
Q ss_pred cccceeEEEecccccCCCCCccceeecceeccCCCCCccccccCCCCCCCCCeEEEEEecCCcEEEEEe-CCeEEEEEC
Q 001477 791 ASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNM 868 (1071)
Q Consensus 791 ~~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~v~~s~d~~~la~~~-dg~i~vwd~ 868 (1071)
...|.+.+||+...+... ...+.. -. - ...|...+||.||..|+... |++|.-||.
T Consensus 326 nq~g~v~vwdL~~~ep~~-----------------~ttl~~-s~---~-~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 326 NQSGKVYVWDLDNNEPPK-----------------CTTLTH-SK---S-GSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred cCCCcEEEEECCCCCCcc-----------------CceEEe-cc---c-cceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 999999999987543211 111110 11 1 56788999999999887766 899999985
No 165
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.83 E-value=2.1e-16 Score=182.94 Aligned_cols=290 Identities=24% Similarity=0.430 Sum_probs=220.1
Q ss_pred ecCCCCeEEEEeecCCCeEEEEEcCCCeEEEEecCCCc-ccccccceeecccccccchhhhhcccCC-CCeeEEEE-CCC
Q 001477 343 LNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRE-RLAHKPFKVWDISAASMPLQNALLNDAA-ISVNRCVW-GPD 419 (1071)
Q Consensus 343 ~~h~~~V~~~~fsp~g~~lla~gs~dg~i~iwd~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~h~-~~v~~~~~-spd 419 (1071)
..|...|.++.|.+.+. .++.++.|+.+.+|+...+. .... +.++. ..+..+.+ +++
T Consensus 62 ~~~~~~i~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~ 121 (466)
T COG2319 62 RGHEDSITSIAFSPDGE-LLLSGSSDGTIKLWDLDNGEKLIKS-------------------LEGLHDSSVSKLALSSPD 121 (466)
T ss_pred eeccceEEEEEECCCCc-EEEEecCCCcEEEEEcCCCceeEEE-------------------EeccCCCceeeEEEECCC
Confidence 34788999999999998 67778889999999998775 2221 22222 36777777 888
Q ss_pred CC-EEEEEeC-CCeEEEEEecC-CCccceeeEeecccCCEEEEEEecCCCceEEEEEeC-CCcEEEEEccCCceeEEecC
Q 001477 420 GL-MLGVAFS-KHIVHLYTYNP-TGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD-DKMIKVWDVVAGRKQYTFEG 495 (1071)
Q Consensus 420 ~~-~la~~~~-dg~i~iwd~~~-~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~ 495 (1071)
+. .++..+. |+.+.+|+... ..... .+..|...|.+++|+|++. .+++++. |+.+++|++..+..+..+.+
T Consensus 122 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (466)
T COG2319 122 GNSILLASSSLDGTVKLWDLSTPGKLIR---TLEGHSESVTSLAFSPDGK--LLASGSSLDGTIKLWDLRTGKPLSTLAG 196 (466)
T ss_pred cceEEeccCCCCccEEEEEecCCCeEEE---EEecCcccEEEEEECCCCC--EEEecCCCCCceEEEEcCCCceEEeecc
Confidence 88 5555444 99999999987 43333 6778999999999999998 7788875 99999999999999999999
Q ss_pred CCCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCceeE-EecCCCCcEEEEEEccCCCEEEEeccCCCCCCeEEEEeC
Q 001477 496 HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV-DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNE 574 (1071)
Q Consensus 496 h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~-~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~ 574 (1071)
|...|.+++|+|.+. ..+++++.|+.|++||........ .+..+.... ...|+|++..+++++. ++.+++|+.
T Consensus 197 ~~~~v~~~~~~~~~~-~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----d~~~~~~~~ 270 (466)
T COG2319 197 HTDPVSSLAFSPDGG-LLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSS----DGTIRLWDL 270 (466)
T ss_pred CCCceEEEEEcCCcc-eEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecC----CCcEEEeee
Confidence 999999999996542 255556999999999888666665 566666664 3389999988886664 888999999
Q ss_pred CCCce-eEEeecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEE-eC
Q 001477 575 SEGAI-KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVT-TS 652 (1071)
Q Consensus 575 ~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~ 652 (1071)
..... ...+.+|.. .+.++.|+|++..+++++.|+.+.+|+..+...........+...+..+.|.+++..++.+ ..
T Consensus 271 ~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (466)
T COG2319 271 RSSSSLLRTLSGHSS-SVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSD 349 (466)
T ss_pred cCCCcEEEEEecCCc-cEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecC
Confidence 87664 444445544 8999999999999988888899999999888776666511222257888883332455555 56
Q ss_pred CCcEEEEEcCCh
Q 001477 653 DNGIKILANSDG 664 (1071)
Q Consensus 653 dg~v~iw~~~~~ 664 (1071)
|+.+.+|+....
T Consensus 350 d~~~~~~~~~~~ 361 (466)
T COG2319 350 DGTIRLWDLRTG 361 (466)
T ss_pred CCcEEeeecCCC
Confidence 777887776544
No 166
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.82 E-value=1.1e-18 Score=172.23 Aligned_cols=248 Identities=17% Similarity=0.252 Sum_probs=192.4
Q ss_pred cccCCCCeeEEEECCCCC--EEEEEeCCCeEEEEEecCC-------------CccceeeEeecccCCEEEEEEecCCCce
Q 001477 404 LNDAAISVNRCVWGPDGL--MLGVAFSKHIVHLYTYNPT-------------GELRQHLEIDAHVGGVNDIAFAHPNKQL 468 (1071)
Q Consensus 404 ~~~h~~~v~~~~~spd~~--~la~~~~dg~i~iwd~~~~-------------~~~~~~~~~~~h~~~v~~~~~s~d~~~~ 468 (1071)
..+|.+.++-+.-++-|+ +.|+=+..|.|.||++... ...+...++.+|.+.=+.++|||-...
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g- 225 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTG- 225 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccc-
Confidence 346788888888887554 4555577899999998531 223455678899999999999994433
Q ss_pred EEEEEeCCCcEEEEEccCCcee---EEecCCCCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCce--eEEecCCCCc
Q 001477 469 CIVTCGDDKMIKVWDVVAGRKQ---YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS--RVDYDAPGNW 543 (1071)
Q Consensus 469 ~l~s~~~d~~i~iwd~~~~~~~---~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~--~~~~~~~~~~ 543 (1071)
.|+||..-+.|++|...+|.-. ..|.+|+..|-.++|+|..+ ..|++||.||+|+|||++.+.. ....+.|...
T Consensus 226 ~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~-~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sD 304 (440)
T KOG0302|consen 226 RLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTED-GVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSD 304 (440)
T ss_pred ccccCccccceEeeeeccCceeecCccccccccchhhhccCCccC-ceEEeeecCceEEEEEecCCCccceeEeeccCCc
Confidence 5889988899999999887653 35668999999999999876 7999999999999999998733 3345888999
Q ss_pred EEEEEEccCCCEEEEeccCCCCCCeEEEEeCCC---CceeEEeecccccceeEEEEeCCC-CEEEEEeCCCcEEEEeCCC
Q 001477 544 CTMMAYSADGTRLFSCGTSKEGESHLVEWNESE---GAIKRTYSGFRKRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDN 619 (1071)
Q Consensus 544 i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~---~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~ 619 (1071)
|+.+.|+.+-.+|++|+. +|++.|||++. ++++..|+-|.. +|+++.|+|.. ..|+++|.|.+|.+||+..
T Consensus 305 VNVISWnr~~~lLasG~D----dGt~~iwDLR~~~~~~pVA~fk~Hk~-pItsieW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 305 VNVISWNRREPLLASGGD----DGTLSIWDLRQFKSGQPVATFKYHKA-PITSIEWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred eeeEEccCCcceeeecCC----CceEEEEEhhhccCCCcceeEEeccC-CeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence 999999999888888874 89999999985 568889999888 99999999976 5677788999999999864
Q ss_pred Cce----------------eEEEecCCCCCCcceEEEcCC-CCEEEEEeCCCcEEEE
Q 001477 620 MNM----------------LTTVDADGGLPASPRLRFNKE-GSLLAVTTSDNGIKIL 659 (1071)
Q Consensus 620 ~~~----------------~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~v~iw 659 (1071)
..- .+.+-.|.+...+..+.|++. ..++++.+.||. .||
T Consensus 380 E~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGf-nVf 435 (440)
T KOG0302|consen 380 EADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGF-NVF 435 (440)
T ss_pred cCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccce-eEE
Confidence 221 112223444457888999984 447777777764 444
No 167
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.82 E-value=3.9e-19 Score=179.40 Aligned_cols=263 Identities=11% Similarity=0.127 Sum_probs=191.4
Q ss_pred CCeEEEEeecC-------CCeEEEEEcCCCeEEEEecCCCcccccccceeecccccccc------hhhhhcccCCCCeeE
Q 001477 347 SNVMSMDFHPQ-------QQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMP------LQNALLNDAAISVNR 413 (1071)
Q Consensus 347 ~~V~~~~fsp~-------g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~------~~~~~~~~h~~~v~~ 413 (1071)
..-.|++|... |+ ++|.|+.|..|.|||+.-...+. ...-+.....+ .....-.+|+..|.+
T Consensus 174 afPLC~ewld~~~~~~~~gN-yvAiGtmdp~IeIWDLDI~d~v~----P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~ 248 (463)
T KOG0270|consen 174 AFPLCIEWLDHGSKSGGAGN-YVAIGTMDPEIEIWDLDIVDAVL----PCVTLGSKASKKKKKKGKRSNSASGHTDAVLA 248 (463)
T ss_pred CcchhhhhhhcCCCCCCCcc-eEEEeccCceeEEeccccccccc----cceeechhhhhhhhhhcccccccccchHHHHH
Confidence 34467777543 44 89999999999999985332211 00001000000 011124579999999
Q ss_pred EEECCC-CCEEEEEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccCCceeEE
Q 001477 414 CVWGPD-GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT 492 (1071)
Q Consensus 414 ~~~spd-~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 492 (1071)
++|+.+ ...||+||.|.+|++||+.++++.. ++..|.+.|.+++|+|.... +|++|+.|++|.+.|.+.......
T Consensus 249 Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~---s~~~~~k~Vq~l~wh~~~p~-~LLsGs~D~~V~l~D~R~~~~s~~ 324 (463)
T KOG0270|consen 249 LSWNRNFRNVLASGSADKTVKLWDVDTGKPKS---SITHHGKKVQTLEWHPYEPS-VLLSGSYDGTVALKDCRDPSNSGK 324 (463)
T ss_pred HHhccccceeEEecCCCceEEEEEcCCCCcce---ehhhcCCceeEEEecCCCce-EEEeccccceEEeeeccCccccCc
Confidence 999985 4589999999999999999998776 67789999999999998776 899999999999999985333222
Q ss_pred ecCCCCCeEEEEecccCCccEEEEEecCCeEEEEEcCCC-ceeEEecCCCCcEEEEEEccCCCEEEEeccCCCCCCeEEE
Q 001477 493 FEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL-GSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVE 571 (1071)
Q Consensus 493 ~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~i 571 (1071)
.-...+.|-.++|.|... ..++++..||+++-+|++.. ++...+..|...|.++++++.-..+++.+. .++.+.+
T Consensus 325 ~wk~~g~VEkv~w~~~se-~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s---~d~~Vkl 400 (463)
T KOG0270|consen 325 EWKFDGEVEKVAWDPHSE-NSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTAS---TDKVVKL 400 (463)
T ss_pred eEEeccceEEEEecCCCc-eeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeecc---ccceEEE
Confidence 223567899999998754 78889999999999999987 667899999999999999997766554332 4888999
Q ss_pred EeCCCCce--eEEeecccccceeEEEEeCCCCE-EEEEeCCCcEEEEeCCCCcee
Q 001477 572 WNESEGAI--KRTYSGFRKRSLGVVQFDTTRNR-FLAAGDEFQIKFWDMDNMNML 623 (1071)
Q Consensus 572 wd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~ 623 (1071)
|++....+ +..-.-.-+ ...|.++.|+-.+ ++.||..+.++|||+.+...+
T Consensus 401 w~~~~~~~~~v~~~~~~~~-rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 401 WKFDVDSPKSVKEHSFKLG-RLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred EeecCCCCccccccccccc-ceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 99874332 221111111 3566777787655 455778888999999876544
No 168
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=1.9e-19 Score=203.16 Aligned_cols=263 Identities=12% Similarity=0.147 Sum_probs=206.1
Q ss_pred eeEEeecCCCCeEEEEeecCCCe---EEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeEE
Q 001477 338 TVVRTLNQGSNVMSMDFHPQQQT---ILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRC 414 (1071)
Q Consensus 338 ~~~~~~~h~~~V~~~~fsp~g~~---lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~ 414 (1071)
+.+..+........++|.+.|.. +||.|..||.|.+||...- +....+ ........|++.|..+
T Consensus 56 k~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~--~~~~~~-----------~~la~~~~h~G~V~gL 122 (1049)
T KOG0307|consen 56 KPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASI--IANASE-----------EVLATKSKHTGPVLGL 122 (1049)
T ss_pred cccccccccccceeeeecccCCCccceeeccccCCceEEecchhh--ccCcch-----------HHHhhhcccCCceeee
Confidence 46667777889999999998875 6899999999999998652 100000 0111256799999999
Q ss_pred EECCCCC-EEEEEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccCCceeEEe
Q 001477 415 VWGPDGL-MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF 493 (1071)
Q Consensus 415 ~~spd~~-~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 493 (1071)
.|++... +||+|+.||.|.|||++.-+...... -......|.+++|+..-.+ +|++++.+|.+.|||++..+.+-.+
T Consensus 123 DfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~-~~~~~~eI~~lsWNrkvqh-ILAS~s~sg~~~iWDlr~~~pii~l 200 (1049)
T KOG0307|consen 123 DFNPFQGNLLASGADDGEILIWDLNKPETPFTPG-SQAPPSEIKCLSWNRKVSH-ILASGSPSGRAVIWDLRKKKPIIKL 200 (1049)
T ss_pred eccccCCceeeccCCCCcEEEeccCCcCCCCCCC-CCCCcccceEeccchhhhH-HhhccCCCCCceeccccCCCccccc
Confidence 9999655 99999999999999998754432111 1124568999999987776 8999999999999999999888777
Q ss_pred cCCCC--CeEEEEecccCCccEEEEEecCC---eEEEEEcCCCcee-EEecCCCCcEEEEEEccCC-CEEEEeccCCCCC
Q 001477 494 EGHEA--PVYSVCPHHKESIQFIFSTAIDG---KIKAWLYDYLGSR-VDYDAPGNWCTMMAYSADG-TRLFSCGTSKEGE 566 (1071)
Q Consensus 494 ~~h~~--~v~~i~~~~~~~~~~l~s~~~d~---~i~vwd~~~~~~~-~~~~~~~~~i~~~~~s~~~-~~l~~~~~~~d~~ 566 (1071)
..+.+ .+..++|+|+.. ..+++++.|. .|.+||++..... ..+..|...|.++.|++.+ .++++++. |
T Consensus 201 s~~~~~~~~S~l~WhP~~a-Tql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgk----D 275 (1049)
T KOG0307|consen 201 SDTPGRMHCSVLAWHPDHA-TQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGK----D 275 (1049)
T ss_pred ccCCCccceeeeeeCCCCc-eeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccC----C
Confidence 66544 577899999876 4455555443 4999999876554 4667999999999999976 67777764 8
Q ss_pred CeEEEEeCCCCceeEEeecccccceeEEEEeCCCC-EEEEEeCCCcEEEEeCCCCc
Q 001477 567 SHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRN-RFLAAGDEFQIKFWDMDNMN 621 (1071)
Q Consensus 567 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~ 621 (1071)
++|.+|+.++++.+..+....+ .+..+.|+|... .+++++-||.|.|+.+....
T Consensus 276 ~~ii~wN~~tgEvl~~~p~~~n-W~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 276 NRIICWNPNTGEVLGELPAQGN-WCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred CCeeEecCCCceEeeecCCCCc-ceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 8899999999999999988555 899999999876 67778899999999987644
No 169
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=2.1e-16 Score=169.89 Aligned_cols=468 Identities=13% Similarity=0.158 Sum_probs=289.2
Q ss_pred CCCeeEEEECCCCCEEEEEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCC----------CceEEEEEeCCC
Q 001477 408 AISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPN----------KQLCIVTCGDDK 477 (1071)
Q Consensus 408 ~~~v~~~~~spd~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~----------~~~~l~s~~~d~ 477 (1071)
...-.++.|+|.| +||.|+. ..|.+-|..+-+.+. .++-|...|+.+.|.|.. .+++|+++...|
T Consensus 15 ~sN~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iq---sie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~G 89 (1062)
T KOG1912|consen 15 RSNRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQ---SIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISG 89 (1062)
T ss_pred cccccccccCccc-eEEEecC-ceEEEEehhhhhhhh---ccccCccceeEEEeccCCCchhccCccccceeEEeccccC
Confidence 3346788899877 6677754 468888988876665 777899999999998732 345788899999
Q ss_pred cEEEEEccCCceeEEecCCCCCeEEEEecccCCc--cEEEEEecCCeEEEEEcCCCceeEEecCCCCcEEEEEEcc-CCC
Q 001477 478 MIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESI--QFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSA-DGT 554 (1071)
Q Consensus 478 ~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~--~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~-~~~ 554 (1071)
.|.+||...+..+..+..|..++..++|-+..+. ..|+.-....++.+|+.++++.............|+.+.| |.+
T Consensus 90 rIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~r 169 (1062)
T KOG1912|consen 90 RIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSR 169 (1062)
T ss_pred cEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcc
Confidence 9999999999999999999999999999876543 5788888889999999999999999888888888899888 444
Q ss_pred EEEEeccCCCCCCeEEEEeCCC-------CceeEEeecccc-----------c-------------ceeEEEEeCCCCEE
Q 001477 555 RLFSCGTSKEGESHLVEWNESE-------GAIKRTYSGFRK-----------R-------------SLGVVQFDTTRNRF 603 (1071)
Q Consensus 555 ~l~~~~~~~d~~~~i~iwd~~~-------~~~~~~~~~~~~-----------~-------------~v~~~~~~~~~~~l 603 (1071)
.+..-+. .|.+.+-+.-. |+..+.-..|.+ . -...++|+|.-+.+
T Consensus 170 h~~~l~s----~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~ 245 (1062)
T KOG1912|consen 170 HFCVLGS----KGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNI 245 (1062)
T ss_pred eEEEEcc----CceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhce
Confidence 4444332 34444443211 111111111110 0 01125678877666
Q ss_pred EEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcC--CCCEEEEEeCCCcEEEEEcCChhhhhhhhcCCccccccC
Q 001477 604 LAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK--EGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRC 681 (1071)
Q Consensus 604 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~ 681 (1071)
+.......+.++|++-..++.......+. +.-+.+-| ....|++...||.+.+|-.+.....++.-..+-..
T Consensus 246 lfi~~prellv~dle~~~~l~vvpier~~--akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~---- 319 (1062)
T KOG1912|consen 246 LFITFPRELLVFDLEYECCLAVVPIERGG--AKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSM---- 319 (1062)
T ss_pred EEEEeccceEEEcchhhceeEEEEeccCC--cceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhcc----
Confidence 66667788999999999999888766553 34455555 45589999999999999765432222211111000
Q ss_pred CCCCCCCCCccccccCCCCccccccCCCCCCCCCCCCcccccccCCCCcccccc--cccccccccCccceeccCCCCCcc
Q 001477 682 PSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVD--VKPRVAEDVDKIKSWRIPDISDPS 759 (1071)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~w~~~~~~~~~ 759 (1071)
+-+.....++++..+....+...|. ....+...++.+.+|.+.++....
T Consensus 320 -----------------------------dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~ 370 (1062)
T KOG1912|consen 320 -----------------------------DLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHL 370 (1062)
T ss_pred -----------------------------ccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCc
Confidence 0000001111122222222222333 222334566888999998643322
Q ss_pred cceeeecCCCcCCCceEEEEEeccc-----chhhhccccceeEEEecccccCCCCCccceeecceeccCCCCCccccccC
Q 001477 760 QIKALRLPDSIAASKVVRLIYTNSG-----LSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDIN 834 (1071)
Q Consensus 760 ~~~~~~~~~~~~~~~v~~l~~s~~g-----~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 834 (1071)
....- ...-+..+.|.... ..+...+.|| -.+.|...... ++.
T Consensus 371 ~~~s~------~iel~~pf~f~~~~~~v~k~~l~~LS~dg-----------~h~sGs~~~~~-----~p~---------- 418 (1062)
T KOG1912|consen 371 DYRSS------SIELVLPFDFNLSTKLVGKTSLISLSDDG-----------SHSSGSTCVRM-----RPM---------- 418 (1062)
T ss_pred ccccc------cccccccccccCceeehhhccccchhhcC-----------CCCCCceeeec-----ccC----------
Confidence 21110 00011111121111 1122222222 11111111110 000
Q ss_pred CCCCCCCCeEEEEEecCC-------cEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCCEEE--------
Q 001477 835 ESKPTEESAACIALSKND-------SYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIA-------- 898 (1071)
Q Consensus 835 ~~~h~~~~v~~v~~s~d~-------~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la-------- 898 (1071)
...+-+.-.|-+ .++|.|. .|+|.++|+.++...+.+..|.+.|.++.|.. ..+++-
T Consensus 419 ------p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g-~sslvSfsys~~n~ 491 (1062)
T KOG1912|consen 419 ------PELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLG-NSSLVSFSYSHVNS 491 (1062)
T ss_pred ------cccceeecCCCCCccceeeeeEEeecCCceEEEEEecchhhhhhhcccccceeeeeecc-ceeEEEeeeccccc
Confidence 001111111111 2677887 89999999999999999999999999999975 444432
Q ss_pred -EEeCCCeEEEEEccCCeEE--EEec-CcCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCce
Q 001477 899 -IGMEDSSVQIYNVRVDEVK--TKLK-GHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEK 958 (1071)
Q Consensus 899 -~g~~dg~v~vwd~~~~~~~--~~l~-~h~~~v~~l~~s~d~~~l~s~~~d~~v~vWd~~~~~~ 958 (1071)
+|+.-+.+.|-|+.+|.-. ..++ ....+|+.+..|.-|+||+..-.|.-+.+||+++...
T Consensus 492 ~sg~vrN~l~vtdLrtGlsk~fR~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~ 555 (1062)
T KOG1912|consen 492 ASGGVRNDLVVTDLRTGLSKRFRGLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRM 555 (1062)
T ss_pred cccceeeeEEEEEcccccccccccCCCCCcCcceeeeecccCceEEEEecccchHHHhhccchH
Confidence 2223346888899998532 2222 3456899999999999999999999999999976443
No 170
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.81 E-value=9.1e-19 Score=178.27 Aligned_cols=287 Identities=13% Similarity=0.144 Sum_probs=216.5
Q ss_pred CCeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeEEEECCCCCEEEEE--eCCCeEEEEEecCCCc-cc
Q 001477 368 VGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA--FSKHIVHLYTYNPTGE-LR 444 (1071)
Q Consensus 368 dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~la~~--~~dg~i~iwd~~~~~~-~~ 444 (1071)
...++|||+...+...... .....-.+.++.|+.... |+++ +.|..+++|.-..... +.
T Consensus 11 gd~~kl~D~s~~~~~~~~~-----------------~~t~~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~~Vp 72 (673)
T KOG4378|consen 11 GDKTKLSDFSDLETKSEYV-----------------HQTAEPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTPEVP 72 (673)
T ss_pred CCceEEeecccccCccccc-----------------cCCCCCcceeeeccccce-EEEeecCCceeEEEecccCCCCccc
Confidence 4589999997655432100 011122499999988765 4444 5678899997654311 11
Q ss_pred eeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccCCceeEEecCCCCCeEEEEecccCCccEEEEEecCCeEE
Q 001477 445 QHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIK 524 (1071)
Q Consensus 445 ~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~ 524 (1071)
......+. .-.|++...... ++++|+..+.|+|||++...+.+.+++|+..|+++.++... .+|++++..|.|.
T Consensus 73 ~~~k~~gd--~~~Cv~~~s~S~--y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~D--eyiAsvs~gGdii 146 (673)
T KOG4378|consen 73 RVRKLTGD--NAFCVACASQSL--YEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTD--EYIASVSDGGDII 146 (673)
T ss_pred eeeccccc--hHHHHhhhhcce--eeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCc--ceeEEeccCCcEE
Confidence 11122222 223333333334 89999999999999999888888899999999999998654 8999999999999
Q ss_pred EEEcCCCceeEEecCCC-CcEEEEEEccCCCEEEEeccCCCCCCeEEEEeCCCCceeEEeecccccceeEEEEeCCC-CE
Q 001477 525 AWLYDYLGSRVDYDAPG-NWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR-NR 602 (1071)
Q Consensus 525 vwd~~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~ 602 (1071)
+-.+.++.....+.... ..+.-+.|+|..+++++... -+|.|.+||+....++..+...+..+...++|+|.. ..
T Consensus 147 ih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~as---d~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l 223 (673)
T KOG4378|consen 147 IHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIAS---DKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEAL 223 (673)
T ss_pred EEecccCccccceecCCCCeEEEeecccccceeeEeec---cCCeEEEEeccCCCcccchhhhccCCcCcceecCCccce
Confidence 99998888777776664 45668999999888775543 288999999998888777665555588899999976 45
Q ss_pred EEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCChhhhhhhhcCCccccccCC
Q 001477 603 FLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCP 682 (1071)
Q Consensus 603 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~ 682 (1071)
|++.|.|..|.+||.........+... .+...++|.++|.+|+.|+..|.|..||++..+..+..+..|...+..+.
T Consensus 224 ~vsVG~Dkki~~yD~~s~~s~~~l~y~---~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~va 300 (673)
T KOG4378|consen 224 LVSVGYDKKINIYDIRSQASTDRLTYS---HPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVA 300 (673)
T ss_pred EEEecccceEEEeecccccccceeeec---CCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEE
Confidence 677899999999999988777777543 36799999999999999999999999999988888888888887766554
Q ss_pred CC
Q 001477 683 SE 684 (1071)
Q Consensus 683 ~~ 684 (1071)
+.
T Consensus 301 fq 302 (673)
T KOG4378|consen 301 FQ 302 (673)
T ss_pred ee
Confidence 33
No 171
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.81 E-value=3.1e-18 Score=169.93 Aligned_cols=218 Identities=16% Similarity=0.198 Sum_probs=176.2
Q ss_pred CCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccCC-------ceeEEecCCCCCeEEEEecccCCcc
Q 001477 440 TGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG-------RKQYTFEGHEAPVYSVCPHHKESIQ 512 (1071)
Q Consensus 440 ~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~-------~~~~~~~~h~~~v~~i~~~~~~~~~ 512 (1071)
|+.-.....+.||.++|..++|+|-+.+ .|++||.|.+|.||.+..+ +++..+.+|+..|.-++|+|... +
T Consensus 68 Gr~d~~~P~v~GHt~~vLDi~w~PfnD~-vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~-N 145 (472)
T KOG0303|consen 68 GRMDASYPLVCGHTAPVLDIDWCPFNDC-VIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAP-N 145 (472)
T ss_pred cccCCCCCCccCccccccccccCccCCc-eeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccch-h
Confidence 3333333456799999999999998877 8999999999999998754 45678889999999999999865 8
Q ss_pred EEEEEecCCeEEEEEcCCCceeEEecCCCCcEEEEEEccCCCEEEEeccCCCCCCeEEEEeCCCCceeEEeeccccccee
Q 001477 513 FIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLG 592 (1071)
Q Consensus 513 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~v~ 592 (1071)
.|++++.|++|.+|++.+++....+. |...|.+++|+.||.++++.+. |..|++||.++++.+..-.+|.+..-.
T Consensus 146 VLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~Ttck----DKkvRv~dpr~~~~v~e~~~heG~k~~ 220 (472)
T KOG0303|consen 146 VLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCK----DKKVRVIDPRRGTVVSEGVAHEGAKPA 220 (472)
T ss_pred hHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecc----cceeEEEcCCCCcEeeecccccCCCcc
Confidence 99999999999999999999999888 9999999999999999999885 777999999999999988888775556
Q ss_pred EEEEeCCCCEEEEEe---CCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEe-CCCcEEEEEcCCh
Q 001477 593 VVQFDTTRNRFLAAG---DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTT-SDNGIKILANSDG 664 (1071)
Q Consensus 593 ~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~v~iw~~~~~ 664 (1071)
.+-|-.+|..+-+|- .+.++-+||..+.+.-..+..-.....|.---|.+|..+++.++ .|+.||.|.+.+.
T Consensus 221 Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d 296 (472)
T KOG0303|consen 221 RAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNE 296 (472)
T ss_pred eeEEeccCceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCC
Confidence 677888888444442 67899999988754433332222223455566788888776554 5999999998776
No 172
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.81 E-value=1.1e-17 Score=167.00 Aligned_cols=150 Identities=15% Similarity=0.220 Sum_probs=130.2
Q ss_pred CCCeeEEEECCCCC-EEEEEeCCCeEEEEEecCCCc------cceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEE
Q 001477 408 AISVNRCVWGPDGL-MLGVAFSKHIVHLYTYNPTGE------LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIK 480 (1071)
Q Consensus 408 ~~~v~~~~~spd~~-~la~~~~dg~i~iwd~~~~~~------~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~ 480 (1071)
..+|..+.|.+++. .+|+|+.|..|++|.++.+.. +.-...+..|...|+++.|+|+|+ +|++|+++|.|.
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~ge--lLASg~D~g~v~ 90 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGE--LLASGGDGGEVF 90 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcC--eeeecCCCceEE
Confidence 45799999999776 999999999999999875432 333446778999999999999999 999999999999
Q ss_pred EEEcc--------C--------CceeEEecCCCCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCceeEEecCCCCcE
Q 001477 481 VWDVV--------A--------GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWC 544 (1071)
Q Consensus 481 iwd~~--------~--------~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i 544 (1071)
+|-.. + -.....+.+|...|..++|+|++ .++++++.|+.+++||+..+.....+..|.+.+
T Consensus 91 lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~--~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yv 168 (434)
T KOG1009|consen 91 LWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDS--NFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYV 168 (434)
T ss_pred EEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCC--ceeeeeeccceEEEEEeccceeEeecccccccc
Confidence 99765 2 11235677899999999999865 899999999999999999999999999999999
Q ss_pred EEEEEccCCCEEEEecc
Q 001477 545 TMMAYSADGTRLFSCGT 561 (1071)
Q Consensus 545 ~~~~~s~~~~~l~~~~~ 561 (1071)
..++|.|-++++++-+.
T Consensus 169 qgvawDpl~qyv~s~s~ 185 (434)
T KOG1009|consen 169 QGVAWDPLNQYVASKSS 185 (434)
T ss_pred ceeecchhhhhhhhhcc
Confidence 99999999999998775
No 173
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=4.9e-17 Score=174.62 Aligned_cols=624 Identities=12% Similarity=0.119 Sum_probs=349.6
Q ss_pred CCeEEEEeecCCCeEEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeEEEECCCC------
Q 001477 347 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDG------ 420 (1071)
Q Consensus 347 ~~V~~~~fsp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd~------ 420 (1071)
..-.++.|+|.| ++|.|+ ...|.+-|..+-+.+.. +.-|...|+.+.|.|-.
T Consensus 16 sN~~A~Dw~~~G--LiAygs-hslV~VVDs~s~q~iqs-------------------ie~h~s~V~~VrWap~~~p~~ll 73 (1062)
T KOG1912|consen 16 SNRNAADWSPSG--LIAYGS-HSLVSVVDSRSLQLIQS-------------------IELHQSAVTSVRWAPAPSPRDLL 73 (1062)
T ss_pred ccccccccCccc--eEEEec-CceEEEEehhhhhhhhc-------------------cccCccceeEEEeccCCCchhcc
Confidence 346788999999 678887 45788889888776654 55688999999998731
Q ss_pred ------CEEEEEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEec---CCCceEEEEEeCCCcEEEEEccCCceeE
Q 001477 421 ------LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAH---PNKQLCIVTCGDDKMIKVWDVVAGRKQY 491 (1071)
Q Consensus 421 ------~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~---d~~~~~l~s~~~d~~i~iwd~~~~~~~~ 491 (1071)
-.||++...|.|.+||...+..+. .+..|..++.+++|-+ +.+. +|+.-....++.+|+..+|+...
T Consensus 74 S~~~~~lliAsaD~~GrIil~d~~~~s~~~---~l~~~~~~~qdl~W~~~rd~Srd-~LlaIh~ss~lvLwntdtG~k~W 149 (1062)
T KOG1912|consen 74 SPSSSQLLIASADISGRIILVDFVLASVIN---WLSHSNDSVQDLCWVPARDDSRD-VLLAIHGSSTLVLWNTDTGEKFW 149 (1062)
T ss_pred CccccceeEEeccccCcEEEEEehhhhhhh---hhcCCCcchhheeeeeccCcchh-eeEEecCCcEEEEEEccCCceee
Confidence 267888889999999999887665 6778889999999976 3334 66667778899999999999988
Q ss_pred EecCCCCCeEEEEecccCCccEEEEEecCCeEEEEEcCCC------ceeEEecCC-CC----------------------
Q 001477 492 TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL------GSRVDYDAP-GN---------------------- 542 (1071)
Q Consensus 492 ~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~------~~~~~~~~~-~~---------------------- 542 (1071)
..........|+.+.|-...+ +..-+..|.+.+.+.-.. .....+... ..
T Consensus 150 k~~ys~~iLs~f~~DPfd~rh-~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~ 228 (1062)
T KOG1912|consen 150 KYDYSHEILSCFRVDPFDSRH-FCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAY 228 (1062)
T ss_pred ccccCCcceeeeeeCCCCcce-EEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchh
Confidence 777666777788888875544 444445555555543211 111111111 00
Q ss_pred ---cEEEEEEccCCCEEEEeccCCCCCCeEEEEeCCCCceeEEeecccccceeEEEEeCCC--CEEEEEeCCCcEEEEeC
Q 001477 543 ---WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR--NRFLAAGDEFQIKFWDM 617 (1071)
Q Consensus 543 ---~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~iwd~ 617 (1071)
..-.++|+|.-+.++.... ...+.++|++-..++....-..+ .+..+.+-|++ ..+++...||.+.+|-.
T Consensus 229 fity~a~faf~p~~rn~lfi~~----prellv~dle~~~~l~vvpier~-~akfv~vlP~~~rd~LfclH~nG~ltirvr 303 (1062)
T KOG1912|consen 229 FITYCAQFAFSPHWRNILFITF----PRELLVFDLEYECCLAVVPIERG-GAKFVDVLPDPRRDALFCLHSNGRLTIRVR 303 (1062)
T ss_pred HHHHHHhhhcChhhhceEEEEe----ccceEEEcchhhceeEEEEeccC-CcceeEeccCCCcceEEEEecCCeEEEEEe
Confidence 0113567776554444333 44499999987777776665544 45567777766 56889999999999976
Q ss_pred CCCc----------------eeEEEecCCCCCCcceEEEcCC-CCEEEEEeCCCcEEEEEcCChhhhhhhhcCCcccccc
Q 001477 618 DNMN----------------MLTTVDADGGLPASPRLRFNKE-GSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNR 680 (1071)
Q Consensus 618 ~~~~----------------~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~ 680 (1071)
+... ....+.......+ ...+..|. ...++.--.+|.+.+|.+.++........+......
T Consensus 304 k~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp-~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~- 381 (1062)
T KOG1912|consen 304 KEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRP-VIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVL- 381 (1062)
T ss_pred eccCccccccchhhccccccceEEEeechhccc-ceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccc-
Confidence 6421 1111111111111 22233343 445555566788888988766211111111111111
Q ss_pred CCCCCCCCCCccccccCCCCccc--cccCCCCCC-------CCCCCCcccccccCCCCccccccc--ccc-cccccCccc
Q 001477 681 CPSEPISSKPLTINALGPASNVS--AAIAPTLER-------PDRGPPAVSISSLGTIDGSRLVDV--KPR-VAEDVDKIK 748 (1071)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~v~ 748 (1071)
.|.+.+..-.++ .+..++.++ +.+..|.+.........+.-.+.+ ..+ ++...|+|.
T Consensus 382 -----------pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~ 450 (1062)
T KOG1912|consen 382 -----------PFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVD 450 (1062)
T ss_pred -----------cccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEE
Confidence 111111111121 223333322 111112111111110001111111 122 233459999
Q ss_pred eeccCCCCCcccceeeecCCCcCCCceEEEEEecccchhhhccccceeEEEecccccCCCCCccceeecceeccCCCCCc
Q 001477 749 SWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTL 828 (1071)
Q Consensus 749 ~w~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 828 (1071)
++|+.+........ .|...|.++.|......+-.+.+. .- +........+.+-++.+|..
T Consensus 451 vvdvst~~v~~~fs-------vht~~VkgleW~g~sslvSfsys~-~n------------~~sg~vrN~l~vtdLrtGls 510 (1062)
T KOG1912|consen 451 VVDVSTNAVAASFS-------VHTSLVKGLEWLGNSSLVSFSYSH-VN------------SASGGVRNDLVVTDLRTGLS 510 (1062)
T ss_pred EEEecchhhhhhhc-------ccccceeeeeeccceeEEEeeecc-cc------------ccccceeeeEEEEEcccccc
Confidence 99998754443332 278888998887766543222221 00 00000111233446666654
Q ss_pred cccc-cCCCCCCCCCeEEEEEecCCcEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEc-CCCC-----------
Q 001477 829 MTND-INESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFH-PQDN----------- 894 (1071)
Q Consensus 829 ~~~~-~~~~~h~~~~v~~v~~s~d~~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s-p~~~----------- 894 (1071)
.... +++ .. +.+|+.+..|..|+|++..- +.-+.+||+++..+++...-.-.-|+.++|+ | .-
T Consensus 511 k~fR~l~~-~d-espI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~mS~a~P~it~leWsl~-~~~si~qk~ls~q 587 (1062)
T KOG1912|consen 511 KRFRGLQK-PD-ESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRLMSLALPLITVLEWSLP-KHPSIKQKELSKQ 587 (1062)
T ss_pred cccccCCC-CC-cCcceeeeecccCceEEEEecccchHHHhhccchHHHHHhhcCCcEEEEeeccc-CCCCcccccchhh
Confidence 3321 222 12 78999999999999999998 8889999998877665554444458999998 3 21
Q ss_pred -----CEEEEEeCCCeEEEEEccC-------CeE-EEEecCcCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeee
Q 001477 895 -----NIIAIGMEDSSVQIYNVRV-------DEV-KTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKS 961 (1071)
Q Consensus 895 -----~~la~g~~dg~v~vwd~~~-------~~~-~~~l~~h~~~v~~l~~s~d~~~l~s~~~d~~v~vWd~~~~~~~~~ 961 (1071)
+..+..+ +..+++.+.. +.. ....+.....+-.|+| .+..|+.|..+|.+.+||+........
T Consensus 588 ~sms~n~vv~ds--~es~~~~~~~~a~~~sdgsq~~~a~esfafal~~mAw--k~d~lv~GD~~GNl~~WDlg~R~SRg~ 663 (1062)
T KOG1912|consen 588 SSMSENLVVLDS--VESRIYHITLSALVVSDGSQVNTAWESFAFALCAMAW--KDDILVVGDVEGNLVVWDLGRRQSRGV 663 (1062)
T ss_pred hhhhhceeeecc--ccchheehhhhhhhhccccchhhHHHHHHHHHHhhhc--cCCeeEeecccCceeEEecccccccCc
Confidence 1233333 2233333221 111 1111112223344666 467899999999999999876432210
Q ss_pred eeecCCCCCCCCCCCceEEEEccCCCEEEEEECCeEEEEeCCCCceeecCCCCCCCCCeeEEEEecCCcEEEEEeCCCeE
Q 001477 962 RFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAI 1041 (1071)
Q Consensus 962 ~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~t~~~Dg~i 1041 (1071)
.-...+. ......-+.|....+++-....+-+||.+.........+...+..+..+.+......++ ..|.++
T Consensus 664 ~d~p~~r------a~~l~~~~ipG~~~~lvl~~d~~~lwdtk~~~lV~siag~dssfrlldvdlc~~~~~~l--~~d~~~ 735 (1062)
T KOG1912|consen 664 RDSPDPR------AHSLTFPQIPGDHTTLVLELDWLPLWDTKADTLVLSIAGMDSSFRLLDVDLCEKSPLVL--PNDNKE 735 (1062)
T ss_pred cCCCCch------hhheecccCCCCceEEEEecCcceecccccceeeeeeccCCcceEEEEEEecccCceec--CCCCce
Confidence 0011111 22233344555445555566678899984443333333332244455555555544444 334477
Q ss_pred EEEEcCCCe
Q 001477 1042 GVFDAETLR 1050 (1071)
Q Consensus 1042 ~vwd~~~~~ 1050 (1071)
++-.++...
T Consensus 736 Rf~~m~mks 744 (1062)
T KOG1912|consen 736 RFRVMPMKS 744 (1062)
T ss_pred eEEeccccC
Confidence 776665444
No 174
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.80 E-value=4.5e-17 Score=167.65 Aligned_cols=491 Identities=11% Similarity=0.130 Sum_probs=293.7
Q ss_pred cCCCCeeEEEECCCCCEEEEEeCCCeEEEEEecCCCccceeeEeecccCCE-EEEEEe-----cCCCceEEEEEeCCCcE
Q 001477 406 DAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGV-NDIAFA-----HPNKQLCIVTCGDDKMI 479 (1071)
Q Consensus 406 ~h~~~v~~~~~spd~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v-~~~~~s-----~d~~~~~l~s~~~d~~i 479 (1071)
.|...|.|+.|+.+...+.+++.+..+.-||+.+... ... .+. ..-| +.+..- ..+..-.++.++.||.+
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~-~~~-~~p--~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf 87 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSV-EVA-KLP--DDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRF 87 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchhh-hhh-hCC--cccCCccccccccccCCCCCcceEEEEcCCceE
Confidence 4777788999998888777775555555555544321 110 110 1111 111110 01111168888999999
Q ss_pred EEEEccCCceeEEecCCCCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCceeEEecCCCCcEEEEEEccCCCEEEEe
Q 001477 480 KVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSC 559 (1071)
Q Consensus 480 ~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 559 (1071)
.+.+ +.++.......|.+.+.+-.|+|++ .-|+++++||.|++|.- ++-....+......|.|++|.|+.+.++.|
T Consensus 88 ~il~-k~~rVE~sv~AH~~A~~~gRW~~dG--tgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W~p~S~~vl~c 163 (737)
T KOG1524|consen 88 VILN-KSARVERSISAHAAAISSGRWSPDG--AGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCARWAPNSNSIVFC 163 (737)
T ss_pred EEec-ccchhhhhhhhhhhhhhhcccCCCC--ceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEEECCCCCceEEe
Confidence 9998 7888888899999999999999866 67999999999999973 233333445566799999999999888877
Q ss_pred ccCCCCCCeEEEEeCCCCceeEEeecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEE
Q 001477 560 GTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLR 639 (1071)
Q Consensus 560 ~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 639 (1071)
. .+.+.+=-+.....+-..+.|.+ -|.++.|++..+.+++||+|-..++||... ..+..-..|. .+|++++
T Consensus 164 ~-----g~h~~IKpL~~n~k~i~WkAHDG-iiL~~~W~~~s~lI~sgGED~kfKvWD~~G-~~Lf~S~~~e--y~ITSva 234 (737)
T KOG1524|consen 164 Q-----GGHISIKPLAANSKIIRWRAHDG-LVLSLSWSTQSNIIASGGEDFRFKIWDAQG-ANLFTSAAEE--YAITSVA 234 (737)
T ss_pred c-----CCeEEEeecccccceeEEeccCc-EEEEeecCccccceeecCCceeEEeecccC-cccccCChhc--cceeeee
Confidence 4 45577777776666677888887 899999999999999999999999999764 4444444444 4899999
Q ss_pred EcCCCCEEEEEeCCCcEEEEEcCChhhhhhhhcCCccccccCCCCCCCCCCccccccCCCCccccccCCCCCCCCCCCCc
Q 001477 640 FNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPA 719 (1071)
Q Consensus 640 ~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 719 (1071)
|+|+ ..++.++.+ ++|+=.
T Consensus 235 ~npd-~~~~v~S~n-t~R~~~----------------------------------------------------------- 253 (737)
T KOG1524|consen 235 FNPE-KDYLLWSYN-TARFSS----------------------------------------------------------- 253 (737)
T ss_pred eccc-cceeeeeee-eeeecC-----------------------------------------------------------
Confidence 9999 666666543 343100
Q ss_pred ccccccCCCCcccccccccccccccCccceeccCCCCCcccceeeecCCCcCCCceEEEEEecccchhhhccccceeEEE
Q 001477 720 VSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLW 799 (1071)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~~~~~dg~v~vw 799 (1071)
...+.|..++||+||.+++.++..|.+.+=
T Consensus 254 --------------------------------------------------p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 254 --------------------------------------------------PRVGSIFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred --------------------------------------------------CCccceEEEEEcCCCceeeccccCceEEEe
Confidence 033568899999999999999998887652
Q ss_pred ec-ccccCCCCCcc--ceeecceeccCCCCCccccccCCCCCCCCCeEEEEEecCCcEEEEEeCCeEEEEECCCCeEEEE
Q 001477 800 KW-QRTERNPSGKA--TANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTM 876 (1071)
Q Consensus 800 ~~-~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~v~~s~d~~~la~~~dg~i~vwd~~~~~~~~~ 876 (1071)
-+ ...-....++. .....+.+-|+.++.... +.. +..+...++ .-.+|+++....|++|.-+.......
T Consensus 284 ~~ieq~l~~~n~~~t~~~r~~I~vrdV~~~v~d~--LE~----p~rv~k~sL--~Y~hLvvaTs~qvyiys~knwntpii 355 (737)
T KOG1524|consen 284 YAIEQQLVSGNLKATSKSRKSITVRDVATGVQDI--LEF----PQRVVKFSL--GYGHLVVATSLQVYIYSEKNWNTPII 355 (737)
T ss_pred eeehhhhhhccceeEeeccceEEeehhhhhHHHH--hhC----ccceeeeee--ceeEEEEEeccEEEEEecCCccCcEE
Confidence 22 21111111111 112234555666655432 221 455555554 44567777778899998777665556
Q ss_pred EeCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEccCCeEEEEec--CcCCC-e--eEEEEcCCCCEEEEE--eCCCcEE
Q 001477 877 FMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLK--GHQNR-I--TGLAFSPTLNALVSS--GADAQLC 949 (1071)
Q Consensus 877 ~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~l~--~h~~~-v--~~l~~s~d~~~l~s~--~~d~~v~ 949 (1071)
+.+....+.-+.-+. ..+++ .+.-+|.+|.++... ....+ |..-. . ..+... ...|+.- .....+.
T Consensus 356 idgre~tr~lieq~e--k~fli--~dgsSi~lytyegR~-~~np~~Pg~~~dlL~~rtlsLa--ndtLaird~ad~kvlh 428 (737)
T KOG1524|consen 356 IDGREDTRNLIEQGE--KYFLI--LDGSSIWLYTYEGRL-HLNPRYPGSQIDLLTWRTLSLA--NDTLAIRDNADPKVLH 428 (737)
T ss_pred EeccccchhHhhhhh--hheEE--ecCcEEEEEEecCce-ecCCCCCCcccccccceeeecc--cceEEeecCCCCeeEE
Confidence 655544432222221 12222 334467777655332 11111 11000 0 122222 2234332 2234577
Q ss_pred EEEC-CCCceeeeeeecCCCCCC-CCCCCceEEEE----ccCCCEEEE-EECCeEEEEeC-CCCceeecCCCCCCCCCee
Q 001477 950 MWSI-DKWEKLKSRFIQAPAGRQ-SPLVGETKVQF----HNDQTHLLV-VHESQISVYDS-KLECSRSWSPKDALPAPIS 1021 (1071)
Q Consensus 950 vWd~-~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~----s~dg~~l~~-~~d~~i~vwd~-~~~~~~~~~~~~~h~~~v~ 1021 (1071)
++|. .+|+... .|+. .....|..++. .++++.++. -..+.+.+=.+ +.+.-..+... ..-|.
T Consensus 429 lFd~istgk~qg-------Dgk~L~hk~~IveIAldqkG~tnDrkVAFiDknrdl~ItsvKrfgkee~I~Ki---GTmVh 498 (737)
T KOG1524|consen 429 LFDLISTGKRQG-------DGKSLRHKQQIVEIALDQKGLTNDRKVAFIDKNRDLFITSVKRFGKEEEIYKI---GTMVH 498 (737)
T ss_pred eccCCCCCcccC-------CccccchhhhHHHhHhhccCCCccceEEEEecCCcEEEEeehhcCchhhhhhh---hhhhh
Confidence 8887 6655331 1110 00022333333 233344444 23445555444 22222222221 45678
Q ss_pred EEEEecCCcEEEEEeCCCeEEEEEcCCCe
Q 001477 1022 SAIYSCDGLLVYAGFCDGAIGVFDAETLR 1050 (1071)
Q Consensus 1022 ~~~~s~dg~~l~t~~~Dg~i~vwd~~~~~ 1050 (1071)
.++|+.. .-+++|-.|+++.||-.++--
T Consensus 499 tLawndt-tNiLcglqDt~fsVWy~pn~v 526 (737)
T KOG1524|consen 499 TLAWNDT-TNILCGLQDTCFSVWYYPNEV 526 (737)
T ss_pred hhhhccc-cceeeeeccceEEEEEcCCcc
Confidence 8999654 446779999999999876543
No 175
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.80 E-value=7.8e-18 Score=167.14 Aligned_cols=234 Identities=15% Similarity=0.242 Sum_probs=184.5
Q ss_pred hcccCCCCeeEEEECC-CCCEEEEEeCCCeEEEEEecCCCcc----ceeeEeecccCCEEEEEEecCCCceEEEEEeCCC
Q 001477 403 LLNDAAISVNRCVWGP-DGLMLGVAFSKHIVHLYTYNPTGEL----RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK 477 (1071)
Q Consensus 403 ~~~~h~~~v~~~~~sp-d~~~la~~~~dg~i~iwd~~~~~~~----~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~ 477 (1071)
.+.||+++|..++|+| +...||+||.|.+|.||++..+... .....|.+|...|.-++|+|...+ .|++++.|.
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~N-VLlsag~Dn 154 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPN-VLLSAGSDN 154 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchh-hHhhccCCc
Confidence 3689999999999999 7779999999999999999765443 334578899999999999998887 789999999
Q ss_pred cEEEEEccCCceeEEecCCCCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCceeEEecCCCC-cEEEEEEccCCCEE
Q 001477 478 MIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN-WCTMMAYSADGTRL 556 (1071)
Q Consensus 478 ~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~-~i~~~~~s~~~~~l 556 (1071)
+|.+||+.+|+.+.++. |.+.|.++.|+.+ |.++++++.|..|||||.++++.+..-..|.+ .-..+.|-.+|. +
T Consensus 155 ~v~iWnv~tgeali~l~-hpd~i~S~sfn~d--Gs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~-i 230 (472)
T KOG0303|consen 155 TVSIWNVGTGEALITLD-HPDMVYSMSFNRD--GSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK-I 230 (472)
T ss_pred eEEEEeccCCceeeecC-CCCeEEEEEeccC--CceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc-e
Confidence 99999999999999987 9999999999864 58999999999999999999988877766655 555667888888 6
Q ss_pred EEeccCCCCCCeEEEEeCCCCc---eeEEeecccccceeEEEEeCCCCEEEEEe-CCCcEEEEeCCCCcee-EEEecCCC
Q 001477 557 FSCGTSKEGESHLVEWNESEGA---IKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNML-TTVDADGG 631 (1071)
Q Consensus 557 ~~~~~~~d~~~~i~iwd~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~-~~~~~~~~ 631 (1071)
++.+.++-.+.++-+||...-+ ....+.... .|.---|.++.+.++.+| .|+.|+-|.+....+. .-+..-..
T Consensus 231 ~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSn--Gvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S 308 (472)
T KOG0303|consen 231 FTTGFSRMSERQIALWDPNNLEEPIALQELDTSN--GVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSS 308 (472)
T ss_pred eeeccccccccceeccCcccccCcceeEEeccCC--ceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEeccccc
Confidence 6666677778999999976533 233333332 466666889988887755 8999999999876532 22322222
Q ss_pred CCCcceEEEcCC
Q 001477 632 LPASPRLRFNKE 643 (1071)
Q Consensus 632 ~~~v~~~~~s~~ 643 (1071)
..+-..+.|-|.
T Consensus 309 ~epQRG~g~mPK 320 (472)
T KOG0303|consen 309 KEPQRGMGFMPK 320 (472)
T ss_pred CCcccccccccc
Confidence 233455666664
No 176
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.79 E-value=6.3e-17 Score=166.62 Aligned_cols=270 Identities=15% Similarity=0.208 Sum_probs=190.8
Q ss_pred CCCCeEEEEeecCCCeEEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeEEEEC--CCCCE
Q 001477 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG--PDGLM 422 (1071)
Q Consensus 345 h~~~V~~~~fsp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~s--pd~~~ 422 (1071)
|...|+|+.|+.+.. ++.+++ |..+.+|.-.+.......... ....+. ..| +....-- .....
T Consensus 13 ~~e~vc~v~w~~~ee-i~~~~d-Dh~~~~~~~~~~~s~~~~~~p-------~df~pt---~~h---~~~rs~~~g~~~d~ 77 (737)
T KOG1524|consen 13 NSEKVCCVDWSSNEE-IYFVSD-DHQIFKWSDVSRDSVEVAKLP-------DDFVPT---DMH---LGGRSSGGGKGSDT 77 (737)
T ss_pred cceeEEeecccccce-EEEecc-CceEEEeecccchhhhhhhCC-------cccCCc---ccc---ccccccCCCCCcce
Confidence 556788999999886 565555 666666654332221110000 000000 011 0000000 12347
Q ss_pred EEEEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccCCceeEEecCCCCCeEE
Q 001477 423 LGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYS 502 (1071)
Q Consensus 423 la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~ 502 (1071)
++.++.||.+.|.+-.. +..+ ...+|.+.|.+-.|+|||. -|+|.+.||.|++|. ++|....++.....+|.|
T Consensus 78 ~~i~s~DGkf~il~k~~-rVE~---sv~AH~~A~~~gRW~~dGt--gLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c 150 (737)
T KOG1524|consen 78 LLICSNDGRFVILNKSA-RVER---SISAHAAAISSGRWSPDGA--GLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRC 150 (737)
T ss_pred EEEEcCCceEEEecccc-hhhh---hhhhhhhhhhhcccCCCCc--eeeeecCCceEEEEe-ccchHHHHHhhcCceeEE
Confidence 88889999999887543 3222 5678999999999999999 799999999999999 888776677667889999
Q ss_pred EEecccCCccEEEEEecCCeEEEEEcCCCceeEEecCCCCcEEEEEEccCCCEEEEeccCCCCCCeEEEEeCCCCceeEE
Q 001477 503 VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRT 582 (1071)
Q Consensus 503 i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~ 582 (1071)
++|.|+.+ +.+++.+ +.+.+=-+.....+.....|++-|.++.|++..+.+++++. |-..++||.. |..+..
T Consensus 151 ~~W~p~S~-~vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGE----D~kfKvWD~~-G~~Lf~ 222 (737)
T KOG1524|consen 151 ARWAPNSN-SIVFCQG--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGE----DFRFKIWDAQ-GANLFT 222 (737)
T ss_pred EEECCCCC-ceEEecC--CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCC----ceeEEeeccc-Cccccc
Confidence 99999864 5565554 45555566667778889999999999999999999999985 7889999976 677766
Q ss_pred eecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEE
Q 001477 583 YSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILA 660 (1071)
Q Consensus 583 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~ 660 (1071)
-..|.. +|++++|+|+ ..++.++. .+++ ++. ...+.|..++||+||..+++|+..|.+.+=-
T Consensus 223 S~~~ey-~ITSva~npd-~~~~v~S~-nt~R------------~~~-p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~ 284 (737)
T KOG1524|consen 223 SAAEEY-AITSVAFNPE-KDYLLWSY-NTAR------------FSS-PRVGSIFNLSWSADGTQATCGTSTGQLIVAY 284 (737)
T ss_pred CChhcc-ceeeeeeccc-cceeeeee-eeee------------ecC-CCccceEEEEEcCCCceeeccccCceEEEee
Confidence 666665 8999999999 55555553 2444 211 2235789999999999999999999876543
No 177
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.78 E-value=4.6e-17 Score=157.48 Aligned_cols=245 Identities=16% Similarity=0.248 Sum_probs=183.1
Q ss_pred EeecCCCCeEEEEee-------cCCCeEEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeE
Q 001477 341 RTLNQGSNVMSMDFH-------PQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNR 413 (1071)
Q Consensus 341 ~~~~h~~~V~~~~fs-------p~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~ 413 (1071)
........|...+|- |+.. +.|+.+.+.-|.+||.-+|+...+ ++.+|-. ..-..-.+
T Consensus 99 ~r~~eg~tvydy~wYs~M~s~qP~t~-l~a~ssr~~PIh~wdaftG~lraS--y~~ydh~------------de~taAhs 163 (406)
T KOG2919|consen 99 YRYQEGETVYDYCWYSRMKSDQPSTN-LFAVSSRDQPIHLWDAFTGKLRAS--YRAYDHQ------------DEYTAAHS 163 (406)
T ss_pred EEeccCCEEEEEEeeeccccCCCccc-eeeeccccCceeeeeccccccccc--hhhhhhH------------Hhhhhhee
Confidence 333356678887775 6666 788889999999999999987753 3333210 01123458
Q ss_pred EEECCCCCEEEEEeCCCeEEEEEe-cCCCccceeeEe----ecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccCCc
Q 001477 414 CVWGPDGLMLGVAFSKHIVHLYTY-NPTGELRQHLEI----DAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR 488 (1071)
Q Consensus 414 ~~~spd~~~la~~~~dg~i~iwd~-~~~~~~~~~~~~----~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~ 488 (1071)
++|||||.+|.+| ....|+++|+ +.|.......++ .+..+.+.|++|+|-... .++.|+....+-|+.-..+.
T Consensus 164 L~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~-~~a~gsY~q~~giy~~~~~~ 241 (406)
T KOG2919|consen 164 LQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSK-TLAVGSYGQRVGIYNDDGRR 241 (406)
T ss_pred EEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCc-ceeeecccceeeeEecCCCC
Confidence 9999999999887 6678999999 444332211111 234678999999997765 78999999999999988999
Q ss_pred eeEEecCCCCCeEEEEecccCCccEEEEEec-CCeEEEEEcCCCceeE-EecCCCC---cEEEEEEccCCCEEEEeccCC
Q 001477 489 KQYTFEGHEAPVYSVCPHHKESIQFIFSTAI-DGKIKAWLYDYLGSRV-DYDAPGN---WCTMMAYSADGTRLFSCGTSK 563 (1071)
Q Consensus 489 ~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~-d~~i~vwd~~~~~~~~-~~~~~~~---~i~~~~~s~~~~~l~~~~~~~ 563 (1071)
+++.+.+|.+.|+.++|.+++ +.|++|+. |-.|..||++...... .+..|.. .-.-....|++++|++++.
T Consensus 242 pl~llggh~gGvThL~~~edG--n~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~t-- 317 (406)
T KOG2919|consen 242 PLQLLGGHGGGVTHLQWCEDG--NKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDT-- 317 (406)
T ss_pred ceeeecccCCCeeeEEeccCc--CeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCC--
Confidence 999999999999999999865 67888775 7889999999765543 3433332 2223445689999999865
Q ss_pred CCCCeEEEEeCCC-CceeEEeecccccceeEEEEeCCCCEEEEEeCC
Q 001477 564 EGESHLVEWNESE-GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE 609 (1071)
Q Consensus 564 d~~~~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 609 (1071)
+|.|++||+++ |..+..+..+.. .++.++++|--..+++++..
T Consensus 318 --dG~V~vwdlk~~gn~~sv~~~~sd-~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 318 --DGSVRVWDLKDLGNEVSVTGNYSD-TVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred --CccEEEEecCCCCCcccccccccc-cccceecCcccceeeeccCc
Confidence 88899999998 777777777766 89999999997777776643
No 178
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.78 E-value=8.1e-18 Score=158.10 Aligned_cols=308 Identities=13% Similarity=0.173 Sum_probs=199.6
Q ss_pred eeEEecCCCCcEEEEEEccCCCEEEEeccCCCCCCeEEEEeCCCCceeEEeecccccceeEEEEeCCCCEEEEEeCCCcE
Q 001477 533 SRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQI 612 (1071)
Q Consensus 533 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 612 (1071)
+.+.+..+...++++.|..+++ |+++.. .|.+.+|++++.+....+.++....|..+..-|+ ..+.+-+.|+.+
T Consensus 6 P~fvLRp~~~~v~s~~fqa~~r-L~sg~~----~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L 79 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLFQANER-LMSGLS----VGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLL 79 (323)
T ss_pred CeeEeccccchheehhhccchh-hhcccc----cceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceE
Confidence 3455667888999999988776 666653 7889999999999888888666668888888886 678888999999
Q ss_pred EEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCC-cEEEEEcCChhhhhhhhcCCccccccCCCCCCCCCCc
Q 001477 613 KFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDN-GIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPL 691 (1071)
Q Consensus 613 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 691 (1071)
.+|++..+..+..-. -.++++.|.+-. +...+... ....++-+.... .+...+..
T Consensus 80 ~lw~ia~s~~i~i~S-----i~~nslgFCrfS--l~~~~k~~eqll~yp~rgsde-~h~~D~g~---------------- 135 (323)
T KOG0322|consen 80 ILWTIAYSAFISIHS-----IVVNSLGFCRFS--LVKKPKNSEQLLEYPSRGSDE-THKQDGGD---------------- 135 (323)
T ss_pred EEEEccCcceEEEee-----eeccccccccce--eccCCCcchhheecCCcccch-hhhhccCc----------------
Confidence 999998765444322 134455554421 11111110 111111111000 00000000
Q ss_pred cccccCCCCccccccCCCCCCCCCCCCcccccccCCCCcccccccccccccccCccceeccCCCCCcccceeeecCCCcC
Q 001477 692 TINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIA 771 (1071)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~ 771 (1071)
.-++++-+-. ....
T Consensus 136 ----------------------------------------------------~tqv~i~dd~--------------~~~K 149 (323)
T KOG0322|consen 136 ----------------------------------------------------TTQVQIADDS--------------ERSK 149 (323)
T ss_pred ----------------------------------------------------cceeEccCch--------------hccc
Confidence 0001110000 0012
Q ss_pred CCceEEEEEec-ccc--hhhhccccceeEEEecccccCCCCCccceeecceeccCCCCCccccccCCCCCCCCCeEEEEE
Q 001477 772 ASKVVRLIYTN-SGL--SLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIAL 848 (1071)
Q Consensus 772 ~~~v~~l~~s~-~g~--~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~v~~ 848 (1071)
.+.+.+..+.. ++. .+++|.++|.+.+||+..+.... +............ .| ..+|.++.+
T Consensus 150 lgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~-------------~~~~~~kv~~~~a--sh-~qpvlsldy 213 (323)
T KOG0322|consen 150 LGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKII-------------QLPQSSKVESPNA--SH-KQPVLSLDY 213 (323)
T ss_pred cCceeeeeccccccceEEEEEeccCCeEEEEEccCCceee-------------ccccccccccchh--hc-cCcceeeee
Confidence 23333333221 222 35778889999999988642211 1111111111122 27 899999999
Q ss_pred ecCCcEEEEEe-CCeEEEEECCC--Ce--EEEEEeCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEccCCeEEEEecCc
Q 001477 849 SKNDSYVMSAS-GGKVSLFNMMT--FK--VMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGH 923 (1071)
Q Consensus 849 s~d~~~la~~~-dg~i~vwd~~~--~~--~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~l~~h 923 (1071)
.+.-..=++|+ +..+..|+++. +. ......-....|..+..-| |++++|++++|++|+||+.++..++..++.|
T Consensus 214 as~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRp-D~KIlATAGWD~RiRVyswrtl~pLAVLkyH 292 (323)
T KOG0322|consen 214 ASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRP-DGKILATAGWDHRIRVYSWRTLNPLAVLKYH 292 (323)
T ss_pred chhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEcc-CCcEEeecccCCcEEEEEeccCCchhhhhhh
Confidence 87666666776 77788888763 22 2223333456788999999 9999999999999999999999999999999
Q ss_pred CCCeeEEEEcCCCCEEEEEeCCCcEEEEEC
Q 001477 924 QNRITGLAFSPTLNALVSSGADAQLCMWSI 953 (1071)
Q Consensus 924 ~~~v~~l~~s~d~~~l~s~~~d~~v~vWd~ 953 (1071)
++.|.+++|+||...+|.+|.|++|.+|++
T Consensus 293 sagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 293 SAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred hcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 999999999999999999999999999986
No 179
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=4.1e-17 Score=168.46 Aligned_cols=240 Identities=13% Similarity=0.173 Sum_probs=165.1
Q ss_pred hcccCCCCeeEEEECCCCCEEEEEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEE
Q 001477 403 LLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 482 (1071)
Q Consensus 403 ~~~~h~~~v~~~~~spd~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iw 482 (1071)
.+.||++.|+|++|+.||.+|++|+.|-.+.|||.-..+.+..+ -.+|.+.|.++.|-|.....++++|..|..|+++
T Consensus 45 eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI--~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 45 ELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSI--STGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF 122 (758)
T ss_pred hhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeee--ecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence 37899999999999999999999999999999999876655543 3489999999999997665589999999999999
Q ss_pred EccC----------CceeEEecCCCCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCceeE----------EecCCCC
Q 001477 483 DVVA----------GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV----------DYDAPGN 542 (1071)
Q Consensus 483 d~~~----------~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~----------~~~~~~~ 542 (1071)
|+.. ....+.+..|...|..|+..|.+. +.+.++++||+|+-+|++...... .+...--
T Consensus 123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~P-htfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~li 201 (758)
T KOG1310|consen 123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGP-HTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLI 201 (758)
T ss_pred ecccccccccccCccchhhhhhhhhhhhhheecCCCCC-ceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhh
Confidence 9984 233455667999999999887654 899999999999999998643211 1111122
Q ss_pred cEEEEEEccCCC-EEEEeccCCCCCCeEEEEeCCCCceeEEeecccc------cceeEEE-EeCCCCEEEEEeCCCcEEE
Q 001477 543 WCTMMAYSADGT-RLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK------RSLGVVQ-FDTTRNRFLAAGDEFQIKF 614 (1071)
Q Consensus 543 ~i~~~~~s~~~~-~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~------~~v~~~~-~~~~~~~l~~~~~dg~i~i 614 (1071)
...++..+|... +|++|+. +...++||.+... ..+..... ....|+. |+|.+- ...+|.+
T Consensus 202 elk~ltisp~rp~~laVGgs----dpfarLYD~Rr~l--ks~~s~~~~~~~pp~~~~cv~yf~p~hl----kn~~gn~-- 269 (758)
T KOG1310|consen 202 ELKCLTISPSRPYYLAVGGS----DPFARLYDRRRVL--KSFRSDGTMNTCPPKDCRCVRYFSPGHL----KNSQGNL-- 269 (758)
T ss_pred eeeeeeecCCCCceEEecCC----Cchhhhhhhhhhc--cCCCCCccccCCCCcccchhheecCccc----cCccccc--
Confidence 567899999765 4556654 7779999964221 11111100 0111111 222210 1111111
Q ss_pred EeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCChhhhhhhh
Q 001477 615 WDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRML 671 (1071)
Q Consensus 615 wd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~ 671 (1071)
.... ..++-+.|+|+|.-|++.-....|+++|+..++.....+
T Consensus 270 --------~~~~------~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y~ 312 (758)
T KOG1310|consen 270 --------DRYI------TCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPYF 312 (758)
T ss_pred --------ccce------eeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceeec
Confidence 0000 124678999999877776666799999998875544443
No 180
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.77 E-value=1.5e-16 Score=151.71 Aligned_cols=290 Identities=15% Similarity=0.265 Sum_probs=208.9
Q ss_pred eEEeecCCCCeEEEEee--cCCCeEEEEEcC----CCeEEEEecC--CCcccccccceeecccccccchhhhhcccCCCC
Q 001477 339 VVRTLNQGSNVMSMDFH--PQQQTILLVGTN----VGDISLWEVG--SRERLAHKPFKVWDISAASMPLQNALLNDAAIS 410 (1071)
Q Consensus 339 ~~~~~~h~~~V~~~~fs--p~g~~lla~gs~----dg~i~iwd~~--~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~ 410 (1071)
.+......-.+.++.|| |+.+..||.|+. .+.|.|-.+. +++.+...+ -.|..+
T Consensus 37 eiy~Y~ap~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~------------------fd~~YP 98 (364)
T KOG0290|consen 37 EIYTYNAPWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDAN------------------FDHPYP 98 (364)
T ss_pred eEEEecCCCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCC------------------CCCCCC
Confidence 35555556789999999 566667888873 3455555443 344333211 358999
Q ss_pred eeEEEECCCCC-----EEEEEeCCCeEEEEEecCCC-ccceee-----EeecccCCEEEEEEecCCCceEEEEEeCCCcE
Q 001477 411 VNRCVWGPDGL-----MLGVAFSKHIVHLYTYNPTG-ELRQHL-----EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMI 479 (1071)
Q Consensus 411 v~~~~~spd~~-----~la~~~~dg~i~iwd~~~~~-~~~~~~-----~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i 479 (1071)
++.+.|.|+.+ +||+++ -.+++|.+...+ .+.... .-..+.+++++..|+.-..+ ++.+++-|.+.
T Consensus 99 ~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~-~igtSSiDTTC 175 (364)
T KOG0290|consen 99 VTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPN-LIGTSSIDTTC 175 (364)
T ss_pred ccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcc-eeEeecccCeE
Confidence 99999999863 666653 369999987421 111111 11246679999999886666 89999999999
Q ss_pred EEEEccCCce---eEEecCCCCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCceeE-EecCC--CCcEEEEEEccC-
Q 001477 480 KVWDVVAGRK---QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV-DYDAP--GNWCTMMAYSAD- 552 (1071)
Q Consensus 480 ~iwd~~~~~~---~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~-~~~~~--~~~i~~~~~s~~- 552 (1071)
.|||+++|.. ...+-.|...|..++|... ..+.+++.+.||.+|++|++..+.-. .+... ..+...++|++.
T Consensus 176 TiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~-s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqD 254 (364)
T KOG0290|consen 176 TIWDIETGVSGTVKTQLIAHDKEVYDIAFLKG-SRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQD 254 (364)
T ss_pred EEEEEeeccccceeeEEEecCcceeEEEeccC-ccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCC
Confidence 9999998743 4567789999999999873 44899999999999999999866533 33332 457888999884
Q ss_pred CCEEEEeccCCCCCCeEEEEeCCC-CceeEEeecccccceeEEEEeCCC-CEEEEEeCCCcEEEEeCCCCce------eE
Q 001477 553 GTRLFSCGTSKEGESHLVEWNESE-GAIKRTYSGFRKRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDNMNM------LT 624 (1071)
Q Consensus 553 ~~~l~~~~~~~d~~~~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~------~~ 624 (1071)
-+++++... ....|.+.|++. ..++..+.+|.. .|+.++|.|.. ..++++|.|.++.+||+...-. +.
T Consensus 255 pnymATf~~---dS~~V~iLDiR~P~tpva~L~~H~a-~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPil 330 (364)
T KOG0290|consen 255 PNYMATFAM---DSNKVVILDIRVPCTPVARLRNHQA-SVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPIL 330 (364)
T ss_pred chHHhhhhc---CCceEEEEEecCCCcceehhhcCcc-cccceEecCCCCceeeecCCcceEEEEecccccccCCCCchh
Confidence 456666554 245599999986 457888999988 99999999975 6788899999999999986322 11
Q ss_pred EEecCCCCCCcceEEEcC-CCCEEEEEeCCCcEEE
Q 001477 625 TVDADGGLPASPRLRFNK-EGSLLAVTTSDNGIKI 658 (1071)
Q Consensus 625 ~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~v~i 658 (1071)
... ....|+.+.|++ .+..++++... .+.+
T Consensus 331 ay~---a~~EVNqi~Ws~~~~Dwiai~~~k-klei 361 (364)
T KOG0290|consen 331 AYT---AGGEVNQIQWSSSQPDWIAICFGK-KLEI 361 (364)
T ss_pred hhh---ccceeeeeeecccCCCEEEEEecC-eeeE
Confidence 222 224789999997 66788877654 4444
No 181
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=1.4e-17 Score=162.56 Aligned_cols=292 Identities=13% Similarity=0.140 Sum_probs=204.7
Q ss_pred EEEEEeCCCcEEEEEccCCceeEEecCCCCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCceeEEe--cCCC-CcEE
Q 001477 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY--DAPG-NWCT 545 (1071)
Q Consensus 469 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~--~~~~-~~i~ 545 (1071)
.++++...|.|++||..+++.+..|+++...++.+.|.....++.+.+++.||+|++||++.......+ ..+. .+..
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~ 121 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFI 121 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcce
Confidence 688888899999999999999999999999999999987655688999999999999999987765433 3333 4677
Q ss_pred EEEEccCCCEEEEeccCCCCCCeEEEEeCCCCce-eEEeecccccceeEEEEeCCC-CEEEEEeCCCcEEEEeCCCCce-
Q 001477 546 MMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI-KRTYSGFRKRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDNMNM- 622 (1071)
Q Consensus 546 ~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~- 622 (1071)
+++.+..++.+++++.-.+.+..+.+||++..+. +..+...+...|++++|+|.. +.|++||.||.|.+||+.....
T Consensus 122 ~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~Ee 201 (376)
T KOG1188|consen 122 CLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEE 201 (376)
T ss_pred EeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcch
Confidence 7877777888888775445577899999997765 666544344489999999965 7899999999999999986432
Q ss_pred ---eEEEecCCCCCCcceEEEcCCC-CEEEEEeCCCcEEEEEcCChhhhhhhhcCCccccccCCCCCCCCCCccccccCC
Q 001477 623 ---LTTVDADGGLPASPRLRFNKEG-SLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGP 698 (1071)
Q Consensus 623 ---~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 698 (1071)
+.++. +...|.++.|..++ +.|.+-+..++..+|+++.+.... .+.........
T Consensus 202 DaL~~viN---~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~-~~~~~~~~~~d------------------ 259 (376)
T KOG1188|consen 202 DALLHVIN---HGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEET-WLENPDVSADD------------------ 259 (376)
T ss_pred hhHHHhhc---ccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhh-cccCccchhhh------------------
Confidence 22222 22368899999876 468888899999999998884222 11111000000
Q ss_pred CCccccccCCCCCCCCCCCCcccccccCCCCcccc-cccccccccc-cCccceeccCCCCCcccceeeecCCCcCCCceE
Q 001477 699 ASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRL-VDVKPRVAED-VDKIKSWRIPDISDPSQIKALRLPDSIAASKVV 776 (1071)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~v~ 776 (1071)
.+.-..+.+ -++...- ..+...+++. .++..++.+..............+..+|..-|+
T Consensus 260 --------~r~~~~~dY-----------~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR 320 (376)
T KOG1188|consen 260 --------LRKEDNCDY-----------VINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVR 320 (376)
T ss_pred --------HHhhhhhhh-----------eeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHH
Confidence 000000000 0000000 1112233344 367777777654444444555555666888899
Q ss_pred EEEEecccchhhhccccceeEEEec
Q 001477 777 RLIYTNSGLSLLALASNAVHKLWKW 801 (1071)
Q Consensus 777 ~l~~s~~g~~l~~~~~dg~v~vw~~ 801 (1071)
++.|...+..+.+|+.||.+.+|..
T Consensus 321 ~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 321 DILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred HHhhhcccceeeccCCCceEEEEec
Confidence 9999999999999999999999974
No 182
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.76 E-value=1.7e-17 Score=155.92 Aligned_cols=289 Identities=16% Similarity=0.193 Sum_probs=199.7
Q ss_pred eEEeec-CCCCeEEEEeecCCCeEEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhhhcc-cCCCCeeEEEE
Q 001477 339 VVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLN-DAAISVNRCVW 416 (1071)
Q Consensus 339 ~~~~~~-h~~~V~~~~fsp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-~h~~~v~~~~~ 416 (1071)
+...+. |.+.|+++.|-.+++ |.+|...|.|++|++++...+.. +. .|...|+.+.-
T Consensus 6 P~fvLRp~~~~v~s~~fqa~~r--L~sg~~~G~V~~w~lqt~r~~~~-------------------~r~~g~~~it~lq~ 64 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLFQANER--LMSGLSVGIVKMWVLQTERDLPL-------------------IRLFGRLFITNLQS 64 (323)
T ss_pred CeeEeccccchheehhhccchh--hhcccccceEEEEEeecCccchh-------------------hhhhccceeeceee
Confidence 344444 889999999999986 67899999999999998765542 33 46778999999
Q ss_pred CCCCCEEEEEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecC-----CCce--EEEEEeCCC-cEEEEEccCCc
Q 001477 417 GPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHP-----NKQL--CIVTCGDDK-MIKVWDVVAGR 488 (1071)
Q Consensus 417 spd~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d-----~~~~--~l~s~~~d~-~i~iwd~~~~~ 488 (1071)
-|+ ..|.+-+.|+.+.+|++..+..+. .|.-.++++-|.+. ++.. .++.-+... .+++-|.....
T Consensus 65 ~p~-d~l~tqgRd~~L~lw~ia~s~~i~------i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~t 137 (323)
T KOG0322|consen 65 IPN-DSLDTQGRDPLLILWTIAYSAFIS------IHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTT 137 (323)
T ss_pred cCC-cchhhcCCCceEEEEEccCcceEE------EeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccc
Confidence 887 567777899999999998765332 34555666666542 1110 111111100 11222221111
Q ss_pred eeEEe----cCCCCCeEEEEeccc-CCccEEEEEecCCeEEEEEcCCCceeE----------EecCCCCcEEEEEEccCC
Q 001477 489 KQYTF----EGHEAPVYSVCPHHK-ESIQFIFSTAIDGKIKAWLYDYLGSRV----------DYDAPGNWCTMMAYSADG 553 (1071)
Q Consensus 489 ~~~~~----~~h~~~v~~i~~~~~-~~~~~l~s~~~d~~i~vwd~~~~~~~~----------~~~~~~~~i~~~~~s~~~ 553 (1071)
.+... .+..+.+.+..+... +..-+++.|.++|.+.+||+.++.... ....|..++.++.+.+..
T Consensus 138 qv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~ 217 (323)
T KOG0322|consen 138 QVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSC 217 (323)
T ss_pred eeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhh
Confidence 12111 134566777664322 222467788899999999999874443 334567789999998765
Q ss_pred CEEEEeccCCCCCCeEEEEeCCC--Cce-eEEeecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCC
Q 001477 554 TRLFSCGTSKEGESHLVEWNESE--GAI-KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG 630 (1071)
Q Consensus 554 ~~l~~~~~~~d~~~~i~iwd~~~--~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 630 (1071)
..=++++. +..+..|++.. +.+ +.....-....+..+.+-||++.++++|-|+.||||+.++..++..+..|.
T Consensus 218 ~rGisgga----~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHs 293 (323)
T KOG0322|consen 218 DRGISGGA----DDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHS 293 (323)
T ss_pred cCCcCCCc----cccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhh
Confidence 55555553 44577787753 221 222222233368889999999999999999999999999999999999886
Q ss_pred CCCCcceEEEcCCCCEEEEEeCCCcEEEEEc
Q 001477 631 GLPASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (1071)
Q Consensus 631 ~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~ 661 (1071)
..|++++|+|+...+|.++.|+.|.+|++
T Consensus 294 --agvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 294 --AGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred --cceeEEEeCCCCchhhhccCCceEEeeec
Confidence 48999999999999999999999999985
No 183
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.76 E-value=3.5e-16 Score=171.47 Aligned_cols=274 Identities=12% Similarity=0.134 Sum_probs=173.4
Q ss_pred ccccCccceeccCCCCCcccceeeecCCCcCCCceEEEEEecccchhhhcc-ccceeEEEecccccCCCCCccceeecce
Q 001477 741 AEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALA-SNAVHKLWKWQRTERNPSGKATANVAPQ 819 (1071)
Q Consensus 741 ~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~~~~-~dg~v~vw~~~~~~~~~~g~~~~~~~~~ 819 (1071)
...++.|.+|++.+.........+. .......++++|++++|++++ .++.|.+|++.. +|.+..
T Consensus 8 ~~~~~~I~~~~~~~~g~l~~~~~~~-----~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~-----~g~l~~----- 72 (330)
T PRK11028 8 SPESQQIHVWNLNHEGALTLLQVVD-----VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIAD-----DGALTF----- 72 (330)
T ss_pred cCCCCCEEEEEECCCCceeeeeEEe-----cCCCCccEEECCCCCEEEEEECCCCcEEEEEECC-----CCceEE-----
Confidence 3556999999996432212222222 224567889999999887664 478888887641 111100
Q ss_pred eccCCCCCccccccCCCCCCCCCeEEEEEecCCcEEEEEe--CCeEEEEECCC-C---eEEEEEeCCCCCeEEEEEcCCC
Q 001477 820 LWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS--GGKVSLFNMMT-F---KVMTMFMSPPPAATFLAFHPQD 893 (1071)
Q Consensus 820 ~~~~~~~~~~~~~~~~~~h~~~~v~~v~~s~d~~~la~~~--dg~i~vwd~~~-~---~~~~~~~~~~~~i~~l~~sp~~ 893 (1071)
.. ... . ......++++|+++++++++ ++.|.+|++++ + +....+. +.....+++++| +
T Consensus 73 ---------~~-~~~---~-~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p-~ 136 (330)
T PRK11028 73 ---------AA-ESP---L-PGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDP-D 136 (330)
T ss_pred ---------ee-eec---C-CCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCC-C
Confidence 00 011 1 23456899999999999887 79999999964 2 2223332 234567889999 7
Q ss_pred CCEEE-EEeCCCeEEEEEccCCeEEE-------EecCcCCCeeEEEEcCCCCEEEEEeC-CCcEEEEECCC--Cceeeee
Q 001477 894 NNIIA-IGMEDSSVQIYNVRVDEVKT-------KLKGHQNRITGLAFSPTLNALVSSGA-DAQLCMWSIDK--WEKLKSR 962 (1071)
Q Consensus 894 ~~~la-~g~~dg~v~vwd~~~~~~~~-------~l~~h~~~v~~l~~s~d~~~l~s~~~-d~~v~vWd~~~--~~~~~~~ 962 (1071)
+++++ +...++.|.+||+.+...+. .... ......++|+|||++++++.. +++|.+|+++. ++.....
T Consensus 137 g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~-g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~ 215 (330)
T PRK11028 137 NRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVE-GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQ 215 (330)
T ss_pred CCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCC-CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEE
Confidence 77664 55567999999998632221 1111 234678999999999988876 89999999974 2221111
Q ss_pred eecCCCCCCCCCCCceEEEEccCCCEEEEEE--CCeEEEEeC--CCCceeecCCCCCCCCCeeEEEEecCCcEEEEEeC-
Q 001477 963 FIQAPAGRQSPLVGETKVQFHNDQTHLLVVH--ESQISVYDS--KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFC- 1037 (1071)
Q Consensus 963 ~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~--d~~i~vwd~--~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~t~~~- 1037 (1071)
.+...............++|+|||++++++. ++.|.+|++ +............ ......++|+|||++|+++..
T Consensus 216 ~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~ 294 (330)
T PRK11028 216 TLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQK 294 (330)
T ss_pred EEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec-cccCCceEECCCCCEEEEEEcc
Confidence 1111111100012234689999999999973 679999999 2222211111000 234568999999999998775
Q ss_pred CCeEEEEEcC
Q 001477 1038 DGAIGVFDAE 1047 (1071)
Q Consensus 1038 Dg~i~vwd~~ 1047 (1071)
+++|.+|+++
T Consensus 295 ~~~v~v~~~~ 304 (330)
T PRK11028 295 SHHISVYEID 304 (330)
T ss_pred CCcEEEEEEc
Confidence 8999999884
No 184
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=1.1e-16 Score=158.10 Aligned_cols=293 Identities=11% Similarity=0.128 Sum_probs=209.8
Q ss_pred cCCCCeEEEEeecCCCeEEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhhh-cccCCCCeeEEEECCCCCE
Q 001477 344 NQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNAL-LNDAAISVNRCVWGPDGLM 422 (1071)
Q Consensus 344 ~h~~~V~~~~fsp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~h~~~v~~~~~spd~~~ 422 (1071)
.|.+.|.++.||.+++ +||+|+.|..+++|++...-... .+.+..+ -..|...|.|++|....+.
T Consensus 54 ~H~GCiNAlqFS~N~~-~L~SGGDD~~~~~W~~de~~~~k-------------~~KPI~~~~~~H~SNIF~L~F~~~N~~ 119 (609)
T KOG4227|consen 54 EHTGCINALQFSHNDR-FLASGGDDMHGRVWNVDELMVRK-------------TPKPIGVMEHPHRSNIFSLEFDLENRF 119 (609)
T ss_pred hhccccceeeeccCCe-EEeecCCcceeeeechHHHHhhc-------------CCCCceeccCccccceEEEEEccCCee
Confidence 4889999999999997 89999999999999986421111 0111111 2346689999999999999
Q ss_pred EEEEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccCCc-ee--EEecCCCCC
Q 001477 423 LGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR-KQ--YTFEGHEAP 499 (1071)
Q Consensus 423 la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~-~~--~~~~~h~~~ 499 (1071)
+.+|+.+++|.+.|+++.+.+... .-....+.|+.+..+|..+ .+++.+.++.|.+||.+... .+ .-+......
T Consensus 120 ~~SG~~~~~VI~HDiEt~qsi~V~-~~~~~~~~VY~m~~~P~DN--~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~ 196 (609)
T KOG4227|consen 120 LYSGERWGTVIKHDIETKQSIYVA-NENNNRGDVYHMDQHPTDN--TLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKN 196 (609)
T ss_pred EecCCCcceeEeeecccceeeeee-cccCcccceeecccCCCCc--eEEEEecCceEEEEeccCCCCCCceeeecCCCcc
Confidence 999999999999999997655311 1112334899999999977 89999999999999998654 22 222234456
Q ss_pred eEEEEecccCCccEEEEEecCCeEEEEEcCCCceeEE-------ecCCCCcEEEEEEccCCCEEEEeccCCCCCCeEEEE
Q 001477 500 VYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD-------YDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEW 572 (1071)
Q Consensus 500 v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~-------~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iw 572 (1071)
..++.|+|... .+|++.+..+.+-+||.+....... +......-.++.|+|+|+.+++.-. ...-.+|
T Consensus 197 F~t~~F~P~~P-~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR----~~~P~~~ 271 (609)
T KOG4227|consen 197 FYTAEFHPETP-ALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRR----GKCPLYF 271 (609)
T ss_pred ceeeeecCCCc-eeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhc----cCCCEEe
Confidence 77888998754 7899999999999999987654331 1111223367889999999987653 2234567
Q ss_pred eCCCCce-eEEeeccc-----ccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCCc-----------------------ee
Q 001477 573 NESEGAI-KRTYSGFR-----KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN-----------------------ML 623 (1071)
Q Consensus 573 d~~~~~~-~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----------------------~~ 623 (1071)
|+.+.++ +..+.... ...+.+++|..+.. +++|+.+-.|++|.+.... .+
T Consensus 272 D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~ 350 (609)
T KOG4227|consen 272 DFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKEL 350 (609)
T ss_pred eeecccceeEeccCCCCcceeeeeeeeeeeeccee-eeccCcccceEEEecCCCccccCccccCcchhhCchhheeccee
Confidence 8765432 33332111 11466788876654 8999999999999875311 12
Q ss_pred EEEecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEc
Q 001477 624 TTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (1071)
Q Consensus 624 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~ 661 (1071)
..+.+| ..-++.+.|+|...+|++.+-.+.+++|.-
T Consensus 351 ~VLrGH--RSv~NQVRF~~H~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 351 TVLRGH--RSVPNQVRFSQHNNLLVSSGVENSFKLWSD 386 (609)
T ss_pred EEEecc--cccccceeecCCcceEeccchhhheecccc
Confidence 334444 446789999999999999999999999974
No 185
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=7.8e-17 Score=157.52 Aligned_cols=273 Identities=12% Similarity=0.153 Sum_probs=194.7
Q ss_pred eEEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeEEEECC--CCCEEEEEeCCCeEEEEEe
Q 001477 360 TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP--DGLMLGVAFSKHIVHLYTY 437 (1071)
Q Consensus 360 ~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~sp--d~~~la~~~~dg~i~iwd~ 437 (1071)
..+|++-..|.|++||..+++.+.. ++++...++.+.|.. ....+.+|+.||+|++||+
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~-------------------fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~ 101 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEE-------------------FKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDI 101 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhhe-------------------ecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEe
Confidence 3577787899999999999887754 678888999999987 4668899999999999999
Q ss_pred cCCCccceeeEeeccc-CCEEEEEEecCCCceEEEEEe----CCCcEEEEEccCCce-eEEe-cCCCCCeEEEEecccCC
Q 001477 438 NPTGELRQHLEIDAHV-GGVNDIAFAHPNKQLCIVTCG----DDKMIKVWDVVAGRK-QYTF-EGHEAPVYSVCPHHKES 510 (1071)
Q Consensus 438 ~~~~~~~~~~~~~~h~-~~v~~~~~s~d~~~~~l~s~~----~d~~i~iwd~~~~~~-~~~~-~~h~~~v~~i~~~~~~~ 510 (1071)
+........ ....+. .+..|++....++ ++++|. .+-.|.+||++..+. +..+ ..|...|++++|+|..+
T Consensus 102 Rs~~e~a~~-~~~~~~~~~f~~ld~nck~~--ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~p 178 (376)
T KOG1188|consen 102 RSQAESARI-SWTQQSGTPFICLDLNCKKN--IIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDP 178 (376)
T ss_pred ecchhhhhe-eccCCCCCcceEeeccCcCC--eEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCC
Confidence 987665433 344555 5677777765666 677764 466899999998766 5443 46999999999999855
Q ss_pred ccEEEEEecCCeEEEEEcCCCcee---EEecCCCCcEEEEEEccCC-CEEEEeccCCCCCCeEEEEeCCCCceeEEeecc
Q 001477 511 IQFIFSTAIDGKIKAWLYDYLGSR---VDYDAPGNWCTMMAYSADG-TRLFSCGTSKEGESHLVEWNESEGAIKRTYSGF 586 (1071)
Q Consensus 511 ~~~l~s~~~d~~i~vwd~~~~~~~---~~~~~~~~~i~~~~~s~~~-~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~ 586 (1071)
++|++||.||.|.++|+...... ...-.+...|.++.|..++ +.+.+-+. .....+|+++.+.....+...
T Consensus 179 -nlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH----~Etf~~~ele~~~~~~~~~~~ 253 (376)
T KOG1188|consen 179 -NLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTH----METFAIYELEDGSEETWLENP 253 (376)
T ss_pred -CeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEc----cCceeEEEccCCChhhcccCc
Confidence 89999999999999998765332 2333456679999999887 33554443 666999999988755444322
Q ss_pred cc------------cceeEEEEeC-CCCEEEEEeC-CCcEEEEeCC---CC---ceeEEEecCCCCCCcceEEEcCCCCE
Q 001477 587 RK------------RSLGVVQFDT-TRNRFLAAGD-EFQIKFWDMD---NM---NMLTTVDADGGLPASPRLRFNKEGSL 646 (1071)
Q Consensus 587 ~~------------~~v~~~~~~~-~~~~l~~~~~-dg~i~iwd~~---~~---~~~~~~~~~~~~~~v~~~~~s~~~~~ 646 (1071)
.- ..|.+ .+| +...++.++. -++..++-+. ++ +.+..+.+ ++...|.++.|...+.+
T Consensus 254 ~~~~~d~r~~~~~dY~I~~--~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g-~~~eiVR~i~~~~~~~~ 330 (376)
T KOG1188|consen 254 DVSADDLRKEDNCDYVINE--HSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQG-GHEEIVRDILFDVKNDV 330 (376)
T ss_pred cchhhhHHhhhhhhheeec--ccCCCcceEEEeccccCceeEEEeeecccccccCccccccC-CcHHHHHHHhhhcccce
Confidence 10 01111 223 3344554443 5666665444 22 23333333 24456788999889999
Q ss_pred EEEEeCCCcEEEEEcC
Q 001477 647 LAVTTSDNGIKILANS 662 (1071)
Q Consensus 647 l~~~~~dg~v~iw~~~ 662 (1071)
+.+|+.||.+.+|...
T Consensus 331 l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 331 LYTGGEDGLLQAWKVE 346 (376)
T ss_pred eeccCCCceEEEEecC
Confidence 9999999999999864
No 186
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.75 E-value=5.9e-18 Score=183.04 Aligned_cols=278 Identities=16% Similarity=0.277 Sum_probs=215.3
Q ss_pred ecCCCCeEEEEeecCCCeEEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeEEEECCCCCE
Q 001477 343 LNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLM 422 (1071)
Q Consensus 343 ~~h~~~V~~~~fsp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~ 422 (1071)
+.|-..|.|+.|...|. ++++|+.|..++||..+++.++.. ..||.+.|+.++.+.+...
T Consensus 187 lgH~naVyca~fDrtg~-~Iitgsdd~lvKiwS~et~~~lAs-------------------~rGhs~ditdlavs~~n~~ 246 (1113)
T KOG0644|consen 187 LGHRNAVYCAIFDRTGR-YIITGSDDRLVKIWSMETARCLAS-------------------CRGHSGDITDLAVSSNNTM 246 (1113)
T ss_pred Hhhhhheeeeeeccccc-eEeecCccceeeeeeccchhhhcc-------------------CCCCccccchhccchhhhh
Confidence 44888999999999997 688999999999999999988875 7899999999999999999
Q ss_pred EEEEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccCCceeEE---ec-CCCC
Q 001477 423 LGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT---FE-GHEA 498 (1071)
Q Consensus 423 la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~---~~-~h~~ 498 (1071)
+|+++.|..|++|.+.++..+. .+.+|.+.|++++|+|- .+.+.||++++||.+-.-.++. +. ....
T Consensus 247 iaaaS~D~vIrvWrl~~~~pvs---vLrghtgavtaiafsP~------~sss~dgt~~~wd~r~~~~~y~prp~~~~~~~ 317 (1113)
T KOG0644|consen 247 IAAASNDKVIRVWRLPDGAPVS---VLRGHTGAVTAIAFSPR------ASSSDDGTCRIWDARLEPRIYVPRPLKFTEKD 317 (1113)
T ss_pred hhhcccCceEEEEecCCCchHH---HHhccccceeeeccCcc------ccCCCCCceEeccccccccccCCCCCCccccc
Confidence 9999999999999999998776 78899999999999984 4678899999999871111111 00 1234
Q ss_pred CeEEEEecccCCccEEEEEecCCeEEEEEcCCCceeEEecCCCCcEEEEEEccCCC-EEEEeccCCCCCCeEEEEeCCCC
Q 001477 499 PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGT-RLFSCGTSKEGESHLVEWNESEG 577 (1071)
Q Consensus 499 ~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~~~d~~~~i~iwd~~~~ 577 (1071)
.+.++.|-. ++..+++++.|+.-..|.+... ..+...+.-+.++.|-. +.+++- .+..+.+|++.+|
T Consensus 318 ~~~s~~~~~--~~~~f~Tgs~d~ea~n~e~~~l------~~~~~~lif~t~ssd~~~~~~~ar----~~~~~~vwnl~~g 385 (1113)
T KOG0644|consen 318 LVDSILFEN--NGDRFLTGSRDGEARNHEFEQL------AWRSNLLIFVTRSSDLSSIVVTAR----NDHRLCVWNLYTG 385 (1113)
T ss_pred ceeeeeccc--cccccccccCCcccccchhhHh------hhhccceEEEeccccccccceeee----eeeEeeeeecccc
Confidence 455555543 4467899999999888865421 11122222222333333 222322 3667899999999
Q ss_pred ceeEEeecccccceeEEEEeCCCCEEE-EEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCcE
Q 001477 578 AIKRTYSGFRKRSLGVVQFDTTRNRFL-AAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGI 656 (1071)
Q Consensus 578 ~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v 656 (1071)
...+.+.+|.. .+..+.++|-+..++ +++.||...|||+-.|.+++..... + ..+....|+++|..++....-|.+
T Consensus 386 ~l~H~l~ghsd-~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~g-h-~kl~d~kFSqdgts~~lsd~hgql 462 (1113)
T KOG0644|consen 386 QLLHNLMGHSD-EVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIG-H-GKLVDGKFSQDGTSIALSDDHGQL 462 (1113)
T ss_pred hhhhhhccccc-ceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecc-c-ceeeccccCCCCceEecCCCCCce
Confidence 99999999988 889999999876655 5889999999999999888776532 2 367888999999999998888999
Q ss_pred EEEEcCCh
Q 001477 657 KILANSDG 664 (1071)
Q Consensus 657 ~iw~~~~~ 664 (1071)
.|.....+
T Consensus 463 ~i~g~gqs 470 (1113)
T KOG0644|consen 463 YILGTGQS 470 (1113)
T ss_pred EEeccCCC
Confidence 99876544
No 187
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.75 E-value=1.7e-17 Score=172.93 Aligned_cols=251 Identities=14% Similarity=0.162 Sum_probs=188.9
Q ss_pred cccCCCCeeEEEECCCCCEEEEEeCCCeEEEEEec-----CCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCc
Q 001477 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYN-----PTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKM 478 (1071)
Q Consensus 404 ~~~h~~~v~~~~~spd~~~la~~~~dg~i~iwd~~-----~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~ 478 (1071)
+..|.+.|..++|.|....|++++.||.+.+|++. ....+.+..++.+|.++|.|++..++++ .+++|+.||+
T Consensus 290 l~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~--~~ysgg~Dg~ 367 (577)
T KOG0642|consen 290 LRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGE--HCYSGGIDGT 367 (577)
T ss_pred eecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCce--EEEeeccCce
Confidence 56799999999999999999999999999999993 2344567779999999999999999999 8999999999
Q ss_pred EEEEEccCC----------ceeEEecCCCCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCceeEEecC--CCCcEEE
Q 001477 479 IKVWDVVAG----------RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA--PGNWCTM 546 (1071)
Q Consensus 479 i~iwd~~~~----------~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~--~~~~i~~ 546 (1071)
|+.|++... .....+.||.+.|+.++++... +.|++++.||+++.|+...... ..+.. ..+.-.+
T Consensus 368 I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~--~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pls 444 (577)
T KOG0642|consen 368 IRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTK--DRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLS 444 (577)
T ss_pred eeeeccCCCCCcccccCcchhccceeccccceeeeeecccc--cceeeecCCceEEeeccCCcCc-cccCCccccCCcce
Confidence 999965421 2335678999999999999877 6799999999999998765554 22222 2223344
Q ss_pred EEEccCCCEEEEeccCCCCCCeEEEEeCCCCceeEEeeccc------ccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCC
Q 001477 547 MAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFR------KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM 620 (1071)
Q Consensus 547 ~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 620 (1071)
+.+-.....+..++. ..+.-.+++...+..+..+.... ...+..+.++|.+.+.+++.+|+.|+++|..++
T Consensus 445 vd~~ss~~a~~~~s~---~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~ 521 (577)
T KOG0642|consen 445 VDRTSSRPAHSLASF---RFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTG 521 (577)
T ss_pred EeeccchhHhhhhhc---ccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccccc
Confidence 444332211111111 12222234444444333333211 124677889999999999999999999999999
Q ss_pred ceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCh
Q 001477 621 NMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1071)
Q Consensus 621 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~ 664 (1071)
+++.....|. ..++++++.|+|.+|++++.||.+++|.+...
T Consensus 522 ~~l~s~~a~~--~svtslai~~ng~~l~s~s~d~sv~l~kld~k 563 (577)
T KOG0642|consen 522 KILHSMVAHK--DSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK 563 (577)
T ss_pred ccchheeecc--ceecceeecCCCceEEeecCCceeehhhccch
Confidence 9998887654 47899999999999999999999999998655
No 188
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.75 E-value=2.3e-16 Score=150.23 Aligned_cols=255 Identities=14% Similarity=0.214 Sum_probs=184.7
Q ss_pred CCCCeEEEEeecCCCeEEEEEcCC-------CeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeEEEEC
Q 001477 345 QGSNVMSMDFHPQQQTILLVGTNV-------GDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 417 (1071)
Q Consensus 345 h~~~V~~~~fsp~g~~lla~gs~d-------g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~s 417 (1071)
|.++|+.++-+|-.+++|+++..+ -.+.||.+....... +...|+ ....+-..+-+.|.|+.|.
T Consensus 62 ~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S--~~~tlE-------~v~~Ldteavg~i~cvew~ 132 (370)
T KOG1007|consen 62 HAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQS--NSSTLE-------CVASLDTEAVGKINCVEWE 132 (370)
T ss_pred CCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCcc--ccchhh-------HhhcCCHHHhCceeeEEEc
Confidence 678999999999998899987542 257889886432211 111111 0111122455689999999
Q ss_pred CCCCEEEEEeCCCeEEEEEecCCCccceee---EeecccCCEEEEEEec--CCCceEEEEEeCCCcEEEEEccCCceeEE
Q 001477 418 PDGLMLGVAFSKHIVHLYTYNPTGELRQHL---EIDAHVGGVNDIAFAH--PNKQLCIVTCGDDKMIKVWDVVAGRKQYT 492 (1071)
Q Consensus 418 pd~~~la~~~~dg~i~iwd~~~~~~~~~~~---~~~~h~~~v~~~~~s~--d~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 492 (1071)
|++..+|+-. |..|.+|++..+..+.... .-.+|....++-+|+| ||. .+++. .|+++..||+++.++...
T Consensus 133 Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgn--qv~tt-~d~tl~~~D~RT~~~~~s 208 (370)
T KOG1007|consen 133 PNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGN--QVATT-SDSTLQFWDLRTMKKNNS 208 (370)
T ss_pred CCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccc--eEEEe-CCCcEEEEEccchhhhcc
Confidence 9999998874 8889999998876532111 1113566788899998 555 45554 489999999999887776
Q ss_pred ec-CCCCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCce-eEEecCCCCcEEEEEEccCCCE-EEEeccCCCCCCeE
Q 001477 493 FE-GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS-RVDYDAPGNWCTMMAYSADGTR-LFSCGTSKEGESHL 569 (1071)
Q Consensus 493 ~~-~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~-~~~~~~~~~~i~~~~~s~~~~~-l~~~~~~~d~~~~i 569 (1071)
+. .|...|..+.|+|+.. .+|++++.||.|++||.+..+. +..+..|.+++.++.|+|.-.. +++++. |..|
T Consensus 209 I~dAHgq~vrdlDfNpnkq-~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~S----Ds~V 283 (370)
T KOG1007|consen 209 IEDAHGQRVRDLDFNPNKQ-HILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGS----DSAV 283 (370)
T ss_pred hhhhhcceeeeccCCCCce-EEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCC----Ccee
Confidence 65 5889999999999764 7899999999999999997665 5578899999999999996554 456654 6778
Q ss_pred EEEeCCCC-----------------------------ceeEEeecccccceeEEEEeCCCCEE-EEEeCCCcEEEEeCC
Q 001477 570 VEWNESEG-----------------------------AIKRTYSGFRKRSLGVVQFDTTRNRF-LAAGDEFQIKFWDMD 618 (1071)
Q Consensus 570 ~iwd~~~~-----------------------------~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~ 618 (1071)
.+|....- ..+.++..|.+ .|.+++|+.-...+ ++-+.||.+.|=.+.
T Consensus 284 ~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehED-SVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 284 NLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHED-SVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred EEEeccccccccccccccccccCcchhhHHhccccccccccccccccc-ceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 88865311 12335666776 89999999876664 557899998886554
No 189
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.75 E-value=1.1e-16 Score=155.13 Aligned_cols=398 Identities=12% Similarity=0.121 Sum_probs=243.1
Q ss_pred EEEEecCCCceEEEEEeCCCcEEEEEccCCceeEEecCCCCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCceeEEe
Q 001477 458 DIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY 537 (1071)
Q Consensus 458 ~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~ 537 (1071)
-+.|||+|+ ++++++.- .+.|-|..+-+..+.+.. -..|.-+.|..+. ...|.....|+.|.+|++...+-...+
T Consensus 13 ~c~fSp~g~--yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads-~~ilC~~yk~~~vqvwsl~Qpew~ckI 87 (447)
T KOG4497|consen 13 FCSFSPCGN--YIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADS-CHILCVAYKDPKVQVWSLVQPEWYCKI 87 (447)
T ss_pred ceeECCCCC--eeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccc-eeeeeeeeccceEEEEEeecceeEEEe
Confidence 468999999 89988865 777888777665444332 3456666776543 245566678999999999988888888
Q ss_pred cCCCCcEEEEEEccCCCEEEEeccCCCCCCeEEEEeCCCCceeEEeecccccceeEEEEeCCCCEEEEEeCC-C--cEEE
Q 001477 538 DAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE-F--QIKF 614 (1071)
Q Consensus 538 ~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g--~i~i 614 (1071)
.....++.+++|||||+.++..+. -+-.|.+|.+.+.+.... .+....+..++|+|+|++.+..+.. . .+.+
T Consensus 88 deg~agls~~~WSPdgrhiL~tse---F~lriTVWSL~t~~~~~~--~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i 162 (447)
T KOG4497|consen 88 DEGQAGLSSISWSPDGRHILLTSE---FDLRITVWSLNTQKGYLL--PHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQI 162 (447)
T ss_pred ccCCCcceeeeECCCcceEeeeec---ceeEEEEEEeccceeEEe--cccccCceeEEECCCCceeeeeecccHHHHHHH
Confidence 888889999999999998886653 377799999987664432 2333357889999999998887642 1 1222
Q ss_pred EeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCChhhhhhhhcCCccccccCCCCCCCCCCcccc
Q 001477 615 WDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTIN 694 (1071)
Q Consensus 615 wd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 694 (1071)
.....-..+..+.... ...+.+.|+|||..|++ ||..-..+
T Consensus 163 ~~c~~W~ll~~f~~dT--~DltgieWsPdg~~laV---------wd~~Leyk---------------------------- 203 (447)
T KOG4497|consen 163 SSCKAWILLKEFKLDT--IDLTGIEWSPDGNWLAV---------WDNVLEYK---------------------------- 203 (447)
T ss_pred HhhHHHHHHHhcCCCc--ccccCceECCCCcEEEE---------ecchhhhe----------------------------
Confidence 2222223344443332 24578999999987765 54211100
Q ss_pred ccCCCCccccccCCCCCCCCCCCCcccccccCCCCcccccccccccccccCccceeccCCCCCcccceeeecCCCcCCCc
Q 001477 695 ALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASK 774 (1071)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~ 774 (1071)
|..|. ..-.
T Consensus 204 ----------------------------------------------------v~aYe-------------------~~lG 212 (447)
T KOG4497|consen 204 ----------------------------------------------------VYAYE-------------------RGLG 212 (447)
T ss_pred ----------------------------------------------------eeeee-------------------eccc
Confidence 00000 1124
Q ss_pred eEEEEEecccchhhhccccceeEEEecccccCCCCCccceeecceeccCCCCCccccccCCCCCCCCCeEEEEEecCCcE
Q 001477 775 VVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSY 854 (1071)
Q Consensus 775 v~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~v~~s~d~~~ 854 (1071)
+..+.++|.++.|++|+.|+.+||.+-.+-. +-|+...-.+++ |+....+....... . .....|+.|.|.+--
T Consensus 213 ~k~v~wsP~~qflavGsyD~~lrvlnh~tWk--~f~eflhl~s~~--dp~~~~~~ke~~~~--~-ql~~~cLsf~p~~~~ 285 (447)
T KOG4497|consen 213 LKFVEWSPCNQFLAVGSYDQMLRVLNHFTWK--PFGEFLHLCSYH--DPTLHLLEKETFSI--V-QLLHHCLSFTPTDLE 285 (447)
T ss_pred eeEEEeccccceEEeeccchhhhhhceeeee--ehhhhccchhcc--Cchhhhhhhhhcch--h-hhcccccccCCCccc
Confidence 6788999999999999999999885433211 111111000000 00000000000000 0 112234555443210
Q ss_pred EEEEeCCeEEEEECC-CCeEEEEE------eCCCCCeEEEEEcCCCCCEEEEEeCC--CeEEEEEccCCeEEEEecCcCC
Q 001477 855 VMSASGGKVSLFNMM-TFKVMTMF------MSPPPAATFLAFHPQDNNIIAIGMED--SSVQIYNVRVDEVKTKLKGHQN 925 (1071)
Q Consensus 855 la~~~dg~i~vwd~~-~~~~~~~~------~~~~~~i~~l~~sp~~~~~la~g~~d--g~v~vwd~~~~~~~~~l~~h~~ 925 (1071)
|.-....=.+|... +...+..+ ..+...+.-++||+ |..++|+-.+. +.+-+||++.-++...+. ...
T Consensus 286 -a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~-Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~ 362 (447)
T KOG4497|consen 286 -AHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSC-DSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKH 362 (447)
T ss_pred -cCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecC-CceEEeeecCCCCceEEEEechhhhhhhhhh-hcc
Confidence 00000001122211 11122222 23344678899999 89888876443 579999999888766665 556
Q ss_pred CeeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeecCCCCCCCCCCCceEEEEccCCCEEEEEEC
Q 001477 926 RITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHE 994 (1071)
Q Consensus 926 ~v~~l~~s~d~~~l~s~~~d~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d 994 (1071)
+|....|.|....|+.+.....+++|....... ...+.. ...|..+.|.-+|..++..+.
T Consensus 363 piraf~WdP~~prL~vctg~srLY~W~psg~~~-----V~vP~~----GF~i~~l~W~~~g~~i~l~~k 422 (447)
T KOG4497|consen 363 PIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRV-----VGVPKK----GFNIQKLQWLQPGEFIVLCGK 422 (447)
T ss_pred ceeEEEeCCCCceEEEEcCCceEEEEcCCCceE-----EecCCC----CceeeeEEecCCCcEEEEEcC
Confidence 799999999999999888888899999887332 222211 156899999999998887543
No 190
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=6.2e-16 Score=143.60 Aligned_cols=258 Identities=13% Similarity=0.143 Sum_probs=181.8
Q ss_pred ceEEEEEecccchhhhccccceeEEEecccccCCCCCccceeecceeccCCCCCccccccCCCCCCCCCeEEEEEecCCc
Q 001477 774 KVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDS 853 (1071)
Q Consensus 774 ~v~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~v~~s~d~~ 853 (1071)
.|.+-+++|.+++++++..+|.|.++.+..-.. +. ....|+......+. | .+++..++|. ..
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s---~s----------a~~~gk~~iv~eqa--h-dgpiy~~~f~--d~ 73 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDS---GS----------AEPPGKLKIVPEQA--H-DGPIYYLAFH--DD 73 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhc---cc----------cCCCCCcceeeccc--c-CCCeeeeeee--hh
Confidence 345567899999999999999999998764211 00 01223333323344 8 9999999998 46
Q ss_pred EEEEEeCCeEEEEECCCCeE------EEEEe-------CCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEccCCeEEEEe
Q 001477 854 YVMSASGGKVSLFNMMTFKV------MTMFM-------SPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKL 920 (1071)
Q Consensus 854 ~la~~~dg~i~vwd~~~~~~------~~~~~-------~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~l 920 (1071)
+|.+|+||.|+=|....... +.+.. ..-..|+++-..|. .+-+..++.|+.++-||+++|+...++
T Consensus 74 ~Lls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~-enSi~~AgGD~~~y~~dlE~G~i~r~~ 152 (325)
T KOG0649|consen 74 FLLSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPS-ENSILFAGGDGVIYQVDLEDGRIQREY 152 (325)
T ss_pred heeeccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccC-CCcEEEecCCeEEEEEEecCCEEEEEE
Confidence 88899999999987653211 11111 12357999999994 444555558999999999999999999
Q ss_pred cCcCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeecCCCCCCCCCCCceEEEEccCCCEEEEEECCeEEEE
Q 001477 921 KGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVY 1000 (1071)
Q Consensus 921 ~~h~~~v~~l~~s~d~~~l~s~~~d~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vw 1000 (1071)
+||++-|.+++--.....++||++||++|+||.++++.++..-.........+.-.-.-.+..-+..++++|....+.+|
T Consensus 153 rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp~lslw 232 (325)
T KOG0649|consen 153 RGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGPKLSLW 232 (325)
T ss_pred cCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCCCceeEE
Confidence 99999999999855566788999999999999999987754322221111111111223566677889999999999999
Q ss_pred eC-CCCceeecCCCCCCCCCeeEEEEecCCcEEEEEeCCCeEEEEEcCCCeEEEEeCC
Q 001477 1001 DS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGP 1057 (1071)
Q Consensus 1001 d~-~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~ 1057 (1071)
.+ ...+...+.. ..++..+.|..| .+++++....|.-|.+. |.+...+..
T Consensus 233 hLrsse~t~vfpi----pa~v~~v~F~~d--~vl~~G~g~~v~~~~l~-Gvl~a~ip~ 283 (325)
T KOG0649|consen 233 HLRSSESTCVFPI----PARVHLVDFVDD--CVLIGGEGNHVQSYTLN-GVLQANIPV 283 (325)
T ss_pred eccCCCceEEEec----ccceeEeeeecc--eEEEeccccceeeeeec-cEEEEeccC
Confidence 99 5555544433 567888888655 77788888889999876 555554443
No 191
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.74 E-value=7.8e-17 Score=153.37 Aligned_cols=216 Identities=19% Similarity=0.339 Sum_probs=163.6
Q ss_pred ceeeEEeec--CCCCeEEEEeecCCCeEEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeE
Q 001477 336 TKTVVRTLN--QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNR 413 (1071)
Q Consensus 336 ~~~~~~~~~--h~~~V~~~~fsp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~ 413 (1071)
+.+++..++ +-+.|.|+.|.|++..+++. .|..|.+|++..+..+.. .+ ....-.+|....++
T Consensus 111 tlE~v~~Ldteavg~i~cvew~Pns~klasm--~dn~i~l~~l~ess~~va-ev------------~ss~s~e~~~~fts 175 (370)
T KOG1007|consen 111 TLECVASLDTEAVGKINCVEWEPNSDKLASM--DDNNIVLWSLDESSKIVA-EV------------LSSESAEMRHSFTS 175 (370)
T ss_pred hhhHhhcCCHHHhCceeeEEEcCCCCeeEEe--ccCceEEEEcccCcchhe-ee------------cccccccccceecc
Confidence 355666666 55699999999999864433 389999999988765321 11 00011236677888
Q ss_pred EEECC--CCCEEEEEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccC-Ccee
Q 001477 414 CVWGP--DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA-GRKQ 490 (1071)
Q Consensus 414 ~~~sp--d~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~-~~~~ 490 (1071)
-+||| ||+.+++. .|+++..||+++..+... .-.+|...|..+.|+|+.+. +|+||++||.|++||.+. ..++
T Consensus 176 g~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~s--I~dAHgq~vrdlDfNpnkq~-~lvt~gDdgyvriWD~R~tk~pv 251 (370)
T KOG1007|consen 176 GAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNS--IEDAHGQRVRDLDFNPNKQH-ILVTCGDDGYVRIWDTRKTKFPV 251 (370)
T ss_pred cccCCCCccceEEEe-CCCcEEEEEccchhhhcc--hhhhhcceeeeccCCCCceE-EEEEcCCCccEEEEeccCCCccc
Confidence 99999 88888877 788999999998765543 22478899999999998876 899999999999999985 5578
Q ss_pred EEecCCCCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCc-----------------------------eeEEecCCC
Q 001477 491 YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLG-----------------------------SRVDYDAPG 541 (1071)
Q Consensus 491 ~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~-----------------------------~~~~~~~~~ 541 (1071)
+++.+|...|+++.|+|..+ +++++|+.|..|.+|...... .+..+..|.
T Consensus 252 ~el~~HsHWvW~VRfn~~hd-qLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehE 330 (370)
T KOG1007|consen 252 QELPGHSHWVWAVRFNPEHD-QLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHE 330 (370)
T ss_pred cccCCCceEEEEEEecCccc-eEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccc
Confidence 89999999999999999876 899999999999999653211 112455677
Q ss_pred CcEEEEEEccCCCEEEE-eccCCCCCCeEEEEeCC
Q 001477 542 NWCTMMAYSADGTRLFS-CGTSKEGESHLVEWNES 575 (1071)
Q Consensus 542 ~~i~~~~~s~~~~~l~~-~~~~~d~~~~i~iwd~~ 575 (1071)
..|++++||.-..++++ -+. ||.+.|=.+.
T Consensus 331 DSVY~~aWSsadPWiFASLSY----DGRviIs~V~ 361 (370)
T KOG1007|consen 331 DSVYALAWSSADPWIFASLSY----DGRVIISSVP 361 (370)
T ss_pred cceEEEeeccCCCeeEEEecc----CceEEeecCC
Confidence 78999999887777664 333 6666655443
No 192
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.74 E-value=3.5e-16 Score=173.11 Aligned_cols=273 Identities=16% Similarity=0.211 Sum_probs=202.1
Q ss_pred CCccccCCccceeeEEeecCCCCeEEEEeecCCCeEEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhhhcc
Q 001477 326 TPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLN 405 (1071)
Q Consensus 326 ~~~~~~~d~~~~~~~~~~~h~~~V~~~~fsp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 405 (1071)
.+.+|+.++. ..+...+.-..+|+|+.|+|....++|.|..+|+|.+||+..+....... ......
T Consensus 223 ~~~vW~~~~p-~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~-------------ls~~~~ 288 (555)
T KOG1587|consen 223 VLLVWSLKNP-NTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSG-------------LSALEV 288 (555)
T ss_pred eEEEEecCCC-CCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcc-------------cccccc
Confidence 4556666665 67788888889999999999998899999999999999998776521100 011135
Q ss_pred cCCCCeeEEEECCCC--CEEEEEeCCCeEEEEEecCCCccceeeEee---------cccCCEEEEEEecCCCceEEEEEe
Q 001477 406 DAAISVNRCVWGPDG--LMLGVAFSKHIVHLYTYNPTGELRQHLEID---------AHVGGVNDIAFAHPNKQLCIVTCG 474 (1071)
Q Consensus 406 ~h~~~v~~~~~spd~--~~la~~~~dg~i~iwd~~~~~~~~~~~~~~---------~h~~~v~~~~~s~d~~~~~l~s~~ 474 (1071)
.|..+|+.+.|-.+- .-+++++.||.|..|+++.-........+. .....+++++|.+.... .++.|+
T Consensus 289 sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~-~FiVGT 367 (555)
T KOG1587|consen 289 SHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPN-HFIVGT 367 (555)
T ss_pred cCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCc-eEEEEc
Confidence 699999999998754 459999999999999876533211111111 12236899999987776 799999
Q ss_pred CCCcEEEEE---ccCCc-----eeEEecCCCCCeEEEEecccCCccEEEEEecCCeEEEEEcC-CCceeEEecCCCCcEE
Q 001477 475 DDKMIKVWD---VVAGR-----KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD-YLGSRVDYDAPGNWCT 545 (1071)
Q Consensus 475 ~d~~i~iwd---~~~~~-----~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~-~~~~~~~~~~~~~~i~ 545 (1071)
.+|.|.--+ ...+. .+..+..|.++|.++.++|-.. ..+++++ |-++++|... ...+...+..+...++
T Consensus 368 e~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~-k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~ 445 (555)
T KOG1587|consen 368 EEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYP-KNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVT 445 (555)
T ss_pred CCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCcc-ceeeeec-cceeEeccccCCCCcchhhhhccceee
Confidence 999988733 22222 2335567899999999998764 4445554 9999999887 5566667777777899
Q ss_pred EEEEccCCCEEEEeccCCCCCCeEEEEeCCCC--ceeEEeecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q 001477 546 MMAYSADGTRLFSCGTSKEGESHLVEWNESEG--AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN 619 (1071)
Q Consensus 546 ~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 619 (1071)
+++|||--..++++. +.+|.+.+||+... .++.+.... ......+.|++.|+.+++|...|++.+|++..
T Consensus 446 ~vaWSptrpavF~~~---d~~G~l~iWDLl~~~~~Pv~s~~~~-~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 446 DVAWSPTRPAVFATV---DGDGNLDIWDLLQDDEEPVLSQKVC-SPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred eeEEcCcCceEEEEE---cCCCceehhhhhccccCCccccccc-ccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 999999877776665 36889999999743 344444444 32677788999999999999999999999864
No 193
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.74 E-value=2.5e-17 Score=171.67 Aligned_cols=266 Identities=13% Similarity=0.201 Sum_probs=192.8
Q ss_pred eec-CCCCeEEEEeecCCCeEEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeEEEECCCC
Q 001477 342 TLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDG 420 (1071)
Q Consensus 342 ~~~-h~~~V~~~~fsp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd~ 420 (1071)
++. |.+.|..++|.|... .|++++.||++.+|+++....-... ...+...+.+|.++|.|+++++++
T Consensus 289 tl~s~~d~ir~l~~~~sep-~lit~sed~~lk~WnLqk~~~s~~~-----------~~epi~tfraH~gPVl~v~v~~n~ 356 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEP-VLITASEDGTLKLWNLQKAKKSAEK-----------DVEPILTFRAHEGPVLCVVVPSNG 356 (577)
T ss_pred eeecchhhhhhhhcCCCCC-eEEEeccccchhhhhhcccCCcccc-----------ceeeeEEEecccCceEEEEecCCc
Confidence 444 889999999999997 7899999999999999432111111 111222378999999999999999
Q ss_pred CEEEEEeCCCeEEEEEecCCC-------ccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccCCceeEEe
Q 001477 421 LMLGVAFSKHIVHLYTYNPTG-------ELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF 493 (1071)
Q Consensus 421 ~~la~~~~dg~i~iwd~~~~~-------~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 493 (1071)
..+.+|+.||+|+.|++.... .......+.||.+.|+.+++|+... .|++++.||++++|+.....+ .+|
T Consensus 357 ~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~--~Llscs~DgTvr~w~~~~~~~-~~f 433 (577)
T KOG0642|consen 357 EHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKD--RLLSCSSDGTVRLWEPTEESP-CTF 433 (577)
T ss_pred eEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccc--ceeeecCCceEEeeccCCcCc-ccc
Confidence 999999999999999664221 1122236779999999999999888 699999999999999776655 333
Q ss_pred cC--CCCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCceeEEecC-------CCCcEEEEEEccCCCEEEEeccCCC
Q 001477 494 EG--HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA-------PGNWCTMMAYSADGTRLFSCGTSKE 564 (1071)
Q Consensus 494 ~~--h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~-------~~~~i~~~~~s~~~~~l~~~~~~~d 564 (1071)
.. ..+.-.++.+..... ...++...-+.--++++........+.. ....+..+.+.|.+...+++..
T Consensus 434 ~~~~e~g~Plsvd~~ss~~-a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~he--- 509 (577)
T KOG0642|consen 434 GEPKEHGYPLSVDRTSSRP-AHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHE--- 509 (577)
T ss_pred CCccccCCcceEeeccchh-HhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEeccc---
Confidence 32 223334454433221 1222222222223334443333333221 1235778888999988888875
Q ss_pred CCCeEEEEeCCCCceeEEeecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEec
Q 001477 565 GESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA 628 (1071)
Q Consensus 565 ~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 628 (1071)
++.|+++|..+++++.....|.. .++++++.|+|.+|++++.|+.+++|.+....++.....
T Consensus 510 -d~~Ir~~dn~~~~~l~s~~a~~~-svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~ 571 (577)
T KOG0642|consen 510 -DRSIRFFDNKTGKILHSMVAHKD-SVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTA 571 (577)
T ss_pred -CCceecccccccccchheeeccc-eecceeecCCCceEEeecCCceeehhhccchheeecccc
Confidence 78899999999999999998887 899999999999999999999999999987666655443
No 194
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=3.1e-17 Score=167.45 Aligned_cols=298 Identities=17% Similarity=0.252 Sum_probs=232.4
Q ss_pred EEeec-CCCCeEEEEeecCCCeEEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeEEEECC
Q 001477 340 VRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP 418 (1071)
Q Consensus 340 ~~~~~-h~~~V~~~~fsp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~sp 418 (1071)
...|. |.+.|..|.|...|. +|++|+.|..|.+||+..++.... ...+|...|....|-|
T Consensus 135 ~~kL~~H~GcVntV~FN~~Gd-~l~SgSDD~~vv~WdW~~~~~~l~------------------f~SGH~~NvfQaKFiP 195 (559)
T KOG1334|consen 135 QKKLNKHKGCVNTVHFNQRGD-VLASGSDDLQVVVWDWVSGSPKLS------------------FESGHCNNVFQAKFIP 195 (559)
T ss_pred hhcccCCCCccceeeecccCc-eeeccCccceEEeehhhccCcccc------------------cccccccchhhhhccC
Confidence 33445 899999999999997 799999999999999998876543 1468999999999988
Q ss_pred --CCCEEEEEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccCCceeEEec--
Q 001477 419 --DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE-- 494 (1071)
Q Consensus 419 --d~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-- 494 (1071)
+.+-+++++.||.+++=.+...+.......+..|.++|.-++.-|+... -|.+++.|+.+.-.|++.+.+...+.
T Consensus 196 ~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~-~f~S~geD~~v~~~Dlr~~~pa~~~~cr 274 (559)
T KOG1334|consen 196 FSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPK-PFLSCGEDAVVFHIDLRQDVPAEKFVCR 274 (559)
T ss_pred CCCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCC-cccccccccceeeeeeccCCccceeeee
Confidence 4568999999999999887766655555567789999999999999887 79999999999999998876543332
Q ss_pred -CCCC---CeEEEEecccCCccEEEEEecCCeEEEEEcCCCcee------EEe------cCCCCcEEEEEEccCCCEEEE
Q 001477 495 -GHEA---PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR------VDY------DAPGNWCTMMAYSADGTRLFS 558 (1071)
Q Consensus 495 -~h~~---~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~------~~~------~~~~~~i~~~~~s~~~~~l~~ 558 (1071)
.+.. ...+++.+|... ..+++++.|..+++||.+..... ..+ ....-.|++++|+.++.-+++
T Consensus 275 ~~~~~~~v~L~~Ia~~P~nt-~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLa 353 (559)
T KOG1334|consen 275 EADEKERVGLYTIAVDPRNT-NEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLA 353 (559)
T ss_pred ccCCccceeeeeEecCCCCc-cccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceee
Confidence 2333 567888888753 68999999999999998754332 111 122337999999977665555
Q ss_pred eccCCCCCCeEEEEeCCC--C----------ceeE-Eeeccccc-ceeEEE-EeCCCCEEEEEeCCCcEEEEeCCCCcee
Q 001477 559 CGTSKEGESHLVEWNESE--G----------AIKR-TYSGFRKR-SLGVVQ-FDTTRNRFLAAGDEFQIKFWDMDNMNML 623 (1071)
Q Consensus 559 ~~~~~d~~~~i~iwd~~~--~----------~~~~-~~~~~~~~-~v~~~~-~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 623 (1071)
... +-.|+++.... | ..+. .+++|... .|..+- |.|...++++|+.-|.|.||+-.+++.+
T Consensus 354 SYn----De~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii 429 (559)
T KOG1334|consen 354 SYN----DEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEII 429 (559)
T ss_pred eec----ccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHH
Confidence 443 55588885432 2 2223 37787643 355554 5688899999999999999999999999
Q ss_pred EEEecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCh
Q 001477 624 TTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1071)
Q Consensus 624 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~ 664 (1071)
..+.+..+ -|+|+.-+|--..||+.+-|..|+||...+.
T Consensus 430 ~~MegDr~--VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~ 468 (559)
T KOG1334|consen 430 RFMEGDRH--VVNCLEPHPHLPVLASSGIDHDVKIWTPLTA 468 (559)
T ss_pred HHhhcccc--eEeccCCCCCCchhhccCCccceeeecCCcc
Confidence 99987666 7899999999999999999999999987443
No 195
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=1.6e-15 Score=140.87 Aligned_cols=281 Identities=18% Similarity=0.252 Sum_probs=191.7
Q ss_pred CeEEEEeecCCCeEEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeEEEECCCCCEEEEEe
Q 001477 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF 427 (1071)
Q Consensus 348 ~V~~~~fsp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~la~~~ 427 (1071)
.|.+-++||.++ +|+.|+.+|.|.+..+.+-..-.. ...-........+|.++|+.++|. ..+|.+|+
T Consensus 12 tvf~qa~sp~~~-~l~agn~~G~iav~sl~sl~s~sa---------~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g 79 (325)
T KOG0649|consen 12 TVFAQAISPSKQ-YLFAGNLFGDIAVLSLKSLDSGSA---------EPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG 79 (325)
T ss_pred HHHHHhhCCcce-EEEEecCCCeEEEEEehhhhcccc---------CCCCCcceeeccccCCCeeeeeee--hhheeecc
Confidence 566778999997 788999999999999864211100 000011111146899999999997 45676764
Q ss_pred CCCeEEEEEecCCCccceee-----Eeeccc-----CCEEEEEEecCCCceEEEEEeCCCcEEEEEccCCceeEEecCCC
Q 001477 428 SKHIVHLYTYNPTGELRQHL-----EIDAHV-----GGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHE 497 (1071)
Q Consensus 428 ~dg~i~iwd~~~~~~~~~~~-----~~~~h~-----~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~ 497 (1071)
||.|+-|..+....-...+ ...-|. ..|++|-..|..+ -+++++.|+.++-||+++|+..++++||+
T Consensus 80 -dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~en--Si~~AgGD~~~y~~dlE~G~i~r~~rGHt 156 (325)
T KOG0649|consen 80 -DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSEN--SILFAGGDGVIYQVDLEDGRIQREYRGHT 156 (325)
T ss_pred -CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCC--cEEEecCCeEEEEEEecCCEEEEEEcCCc
Confidence 5999999886543211000 011122 3588999998877 46666689999999999999999999999
Q ss_pred CCeEEEEecccCCccEEEEEecCCeEEEEEcCCCceeEEecCC----------CCcEEEEEEccCCCEEEEeccCCCCCC
Q 001477 498 APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP----------GNWCTMMAYSADGTRLFSCGTSKEGES 567 (1071)
Q Consensus 498 ~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~----------~~~i~~~~~s~~~~~l~~~~~~~d~~~ 567 (1071)
+.|.+++--... ..+++|++||++|+||.++.+....+... +.+|.+++. +..++++++ ..
T Consensus 157 DYvH~vv~R~~~--~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGg-----Gp 227 (325)
T KOG0649|consen 157 DYVHSVVGRNAN--GQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGG-----GP 227 (325)
T ss_pred ceeeeeeecccC--cceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecC-----CC
Confidence 999999864322 57999999999999999999887755332 235555554 557898886 44
Q ss_pred eEEEEeCCCCceeEEeecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCC-CE
Q 001477 568 HLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEG-SL 646 (1071)
Q Consensus 568 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~ 646 (1071)
.+.+|.++..++...|.-.. .+..+.|.. ..+++++..+.+.-|.+.. ......+... ....+..|+... ++
T Consensus 228 ~lslwhLrsse~t~vfpipa--~v~~v~F~~--d~vl~~G~g~~v~~~~l~G-vl~a~ip~~s--~~c~s~s~~~~p~k~ 300 (325)
T KOG0649|consen 228 KLSLWHLRSSESTCVFPIPA--RVHLVDFVD--DCVLIGGEGNHVQSYTLNG-VLQANIPVES--TACYSASWQTSPIKF 300 (325)
T ss_pred ceeEEeccCCCceEEEeccc--ceeEeeeec--ceEEEeccccceeeeeecc-EEEEeccCCc--cceeeecccCCceEE
Confidence 59999999998888776543 566777765 5688888888898888753 3333332221 234444454333 34
Q ss_pred EEEEeCCCcEEEE
Q 001477 647 LAVTTSDNGIKIL 659 (1071)
Q Consensus 647 l~~~~~dg~v~iw 659 (1071)
+-.++..+.+.++
T Consensus 301 ~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 301 ISIAGFSNKLHIL 313 (325)
T ss_pred EEecccceeeeee
Confidence 4445556666665
No 196
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.71 E-value=2.9e-15 Score=165.92 Aligned_cols=250 Identities=15% Similarity=0.140 Sum_probs=185.2
Q ss_pred CCCCeeEEEECC-CCCEEEEEeCCCeEEEEEecCCCcc--ce-eeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEE
Q 001477 407 AAISVNRCVWGP-DGLMLGVAFSKHIVHLYTYNPTGEL--RQ-HLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 482 (1071)
Q Consensus 407 h~~~v~~~~~sp-d~~~la~~~~dg~i~iwd~~~~~~~--~~-~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iw 482 (1071)
-...|+|+.|+| +..++|.|..+|.|.+||+..+... .. ......|..+|+.+.|..+-...-+++++.||.|+.|
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence 466899999999 6778888899999999999887652 11 1122368899999999775543358999999999999
Q ss_pred EccCCce------eEEec------CCCCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCce--------eEEecCCCC
Q 001477 483 DVVAGRK------QYTFE------GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS--------RVDYDAPGN 542 (1071)
Q Consensus 483 d~~~~~~------~~~~~------~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~--------~~~~~~~~~ 542 (1071)
+++.-.. ..... .....++++.|.+... ..++.|+.+|.|..-+...... ...+..|.+
T Consensus 321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p-~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g 399 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDP-NHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIG 399 (555)
T ss_pred eccccccchhhcccccccccccccccccceeeEeeccCCC-ceEEEEcCCcEEEEEeccCCcccccccccccccccccCc
Confidence 8764322 11111 1235688899988644 7899999999998733222211 225566788
Q ss_pred cEEEEEEccCCCEEEEeccCCCCCCeEEEEeCC-CCceeEEeecccccceeEEEEeCCCC-EEEEEeCCCcEEEEeCCCC
Q 001477 543 WCTMMAYSADGTRLFSCGTSKEGESHLVEWNES-EGAIKRTYSGFRKRSLGVVQFDTTRN-RFLAAGDEFQIKFWDMDNM 620 (1071)
Q Consensus 543 ~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~-~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~ 620 (1071)
.|+++.++|-+..++..+ +|..+++|... ...++..+..+.+ .+.+++|||... .|+++..||.|.+||+...
T Consensus 400 ~v~~v~~nPF~~k~fls~----gDW~vriWs~~~~~~Pl~~~~~~~~-~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~ 474 (555)
T KOG1587|consen 400 PVYAVSRNPFYPKNFLSV----GDWTVRIWSEDVIASPLLSLDSSPD-YVTDVAWSPTRPAVFATVDGDGNLDIWDLLQD 474 (555)
T ss_pred ceEeeecCCCccceeeee----ccceeEeccccCCCCcchhhhhccc-eeeeeEEcCcCceEEEEEcCCCceehhhhhcc
Confidence 999999999877666444 27889999987 6677777776665 699999999875 4556778999999999764
Q ss_pred c--eeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCh
Q 001477 621 N--MLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1071)
Q Consensus 621 ~--~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~ 664 (1071)
. ++...... ....+.+.|+++|+.|++|...|.+++|++...
T Consensus 475 ~~~Pv~s~~~~--~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 475 DEEPVLSQKVC--SPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred ccCCccccccc--ccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 4 33333333 345678888999999999999999999999654
No 197
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.71 E-value=2.8e-14 Score=141.56 Aligned_cols=240 Identities=10% Similarity=0.105 Sum_probs=185.6
Q ss_pred CCCeeEEEECCCCCEEEEEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCC--CcEEEEEcc
Q 001477 408 AISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD--KMIKVWDVV 485 (1071)
Q Consensus 408 ~~~v~~~~~spd~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d--~~i~iwd~~ 485 (1071)
...+..+.|+.|...|..|+.|| -++|+.+...... ........|..+-|+.. ++|..+.+ +.+++.+.+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~---~~~~~~~~IvEmLFSSS----LvaiV~~~qpr~Lkv~~~K 76 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCF---SKDTEGVSIVEMLFSSS----LVAIVSIKQPRKLKVVHFK 76 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhh---cccCCCeEEEEeecccc----eeEEEecCCCceEEEEEcc
Confidence 34577888999999999999998 5778776543321 11122334666667643 44444433 459999999
Q ss_pred CCceeEEecCCCCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCceeEEecC---CCCcEEEEEEccCCCEEEEeccC
Q 001477 486 AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA---PGNWCTMMAYSADGTRLFSCGTS 562 (1071)
Q Consensus 486 ~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~---~~~~i~~~~~s~~~~~l~~~~~~ 562 (1071)
.+..+..+. ...+|.++.++. +.|+++-.+. |.|||+++.+....+.. +...+.++++++.+.+++.-+..
T Consensus 77 k~~~ICe~~-fpt~IL~VrmNr----~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~ 150 (391)
T KOG2110|consen 77 KKTTICEIF-FPTSILAVRMNR----KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGST 150 (391)
T ss_pred cCceEEEEe-cCCceEEEEEcc----ceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCC
Confidence 888887764 567899998874 4555555444 99999999888775543 33456777777777899866532
Q ss_pred CCCCCeEEEEeCCCCceeEEeecccccceeEEEEeCCCCEEEEEeCCCc-EEEEeCCCCceeEEEecCCCCCCcceEEEc
Q 001477 563 KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQ-IKFWDMDNMNMLTTVDADGGLPASPRLRFN 641 (1071)
Q Consensus 563 ~d~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s 641 (1071)
..|.|.+||..+-+.+..+..|.+ .+.+++|+++|.+++++|+.|+ |||+.+.+|+.+..+.-......|.+++|+
T Consensus 151 --t~GdV~l~d~~nl~~v~~I~aH~~-~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs 227 (391)
T KOG2110|consen 151 --TSGDVVLFDTINLQPVNTINAHKG-PLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFS 227 (391)
T ss_pred --CCceEEEEEcccceeeeEEEecCC-ceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEEC
Confidence 267799999999999999999888 9999999999999999998887 799999999999999765556678999999
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCh
Q 001477 642 KEGSLLAVTTSDNGIKILANSDG 664 (1071)
Q Consensus 642 ~~~~~l~~~~~dg~v~iw~~~~~ 664 (1071)
|++++|++.+..++|++|.+...
T Consensus 228 ~ds~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 228 PDSQFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred CCCCeEEEecCCCeEEEEEeccc
Confidence 99999999999999999998754
No 198
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.70 E-value=2e-14 Score=157.59 Aligned_cols=267 Identities=14% Similarity=0.194 Sum_probs=175.4
Q ss_pred CCCCccccCCc-cceeeEEeecCCCCeEEEEeecCCCeEEEEEcCCCeEEEEecCC-Ccccccccceeecccccccchhh
Q 001477 324 AHTPNVYSQDD-LTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGS-RERLAHKPFKVWDISAASMPLQN 401 (1071)
Q Consensus 324 ~~~~~~~~~d~-~~~~~~~~~~h~~~V~~~~fsp~g~~lla~gs~dg~i~iwd~~~-~~~~~~~~~~~~d~~~~~~~~~~ 401 (1071)
++.+.+|..+. ...+.+..+.+.+....++++|+++.+++++..++.|.+|++.. ++......
T Consensus 11 ~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~--------------- 75 (330)
T PRK11028 11 SQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAE--------------- 75 (330)
T ss_pred CCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeee---------------
Confidence 45566666542 23346677776678889999999986555556688999999963 32111000
Q ss_pred hhcccCCCCeeEEEECCCCCEEEEEeC-CCeEEEEEecCCCcc-ceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcE
Q 001477 402 ALLNDAAISVNRCVWGPDGLMLGVAFS-KHIVHLYTYNPTGEL-RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMI 479 (1071)
Q Consensus 402 ~~~~~h~~~v~~~~~spd~~~la~~~~-dg~i~iwd~~~~~~~-~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i 479 (1071)
....+....++|+|+|++|++++. ++.|.+|++++...+ .....+. +.....+++|+|+++. ++++...++.|
T Consensus 76 ---~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~-l~v~~~~~~~v 150 (330)
T PRK11028 76 ---SPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRT-LWVPCLKEDRI 150 (330)
T ss_pred ---ecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCE-EEEeeCCCCEE
Confidence 012234678999999998888764 889999999753322 2111222 3345677899999985 45667778999
Q ss_pred EEEEccCCceeE-------EecCCCCCeEEEEecccCCccEEEEEec-CCeEEEEEcCCC--ce--eEEecC------CC
Q 001477 480 KVWDVVAGRKQY-------TFEGHEAPVYSVCPHHKESIQFIFSTAI-DGKIKAWLYDYL--GS--RVDYDA------PG 541 (1071)
Q Consensus 480 ~iwd~~~~~~~~-------~~~~h~~~v~~i~~~~~~~~~~l~s~~~-d~~i~vwd~~~~--~~--~~~~~~------~~ 541 (1071)
.+||+.+...+. ... .......++|+|++ ++++++.. ++.|.+|+++.. .. ...+.. ..
T Consensus 151 ~v~d~~~~g~l~~~~~~~~~~~-~g~~p~~~~~~pdg--~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~ 227 (330)
T PRK11028 151 RLFTLSDDGHLVAQEPAEVTTV-EGAGPRHMVFHPNQ--QYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDT 227 (330)
T ss_pred EEEEECCCCcccccCCCceecC-CCCCCceEEECCCC--CEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCC
Confidence 999997633221 111 12345678998754 78877766 999999999742 22 222211 11
Q ss_pred CcEEEEEEccCCCEEEEeccCCCCCCeEEEEeCCCCc----eeEEeecccccceeEEEEeCCCCEEEEEe-CCCcEEEEe
Q 001477 542 NWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA----IKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWD 616 (1071)
Q Consensus 542 ~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd 616 (1071)
.....+.++|++++++++.. +++.|.+|++.... .+...... .....+.++|+|++|+++. .+++|.+|+
T Consensus 228 ~~~~~i~~~pdg~~lyv~~~---~~~~I~v~~i~~~~~~~~~~~~~~~~--~~p~~~~~~~dg~~l~va~~~~~~v~v~~ 302 (330)
T PRK11028 228 RWAADIHITPDGRHLYACDR---TASLISVFSVSEDGSVLSFEGHQPTE--TQPRGFNIDHSGKYLIAAGQKSHHISVYE 302 (330)
T ss_pred ccceeEEECCCCCEEEEecC---CCCeEEEEEEeCCCCeEEEeEEEecc--ccCCceEECCCCCEEEEEEccCCcEEEEE
Confidence 13346889999999998753 46789999986433 22222221 1345689999999999876 489999998
Q ss_pred CC
Q 001477 617 MD 618 (1071)
Q Consensus 617 ~~ 618 (1071)
++
T Consensus 303 ~~ 304 (330)
T PRK11028 303 ID 304 (330)
T ss_pred Ec
Confidence 75
No 199
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.70 E-value=1.7e-15 Score=144.60 Aligned_cols=259 Identities=13% Similarity=0.227 Sum_probs=184.7
Q ss_pred cccCCccceeeE--EeecCCCCeEEEEeecCCC----eEEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhh
Q 001477 329 VYSQDDLTKTVV--RTLNQGSNVMSMDFHPQQQ----TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNA 402 (1071)
Q Consensus 329 ~~~~d~~~~~~~--~~~~h~~~V~~~~fsp~g~----~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~ 402 (1071)
+...+...++.+ ..++|.-+++.+.|.|+.. .+||++ +..++||.+...+...... ..+...
T Consensus 77 iv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs--~D~LRlWri~~ee~~~~~~----------~~L~~~ 144 (364)
T KOG0290|consen 77 IVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATS--SDFLRLWRIGDEESRVELQ----------SVLNNN 144 (364)
T ss_pred EEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhcc--cCeEEEEeccCcCCceehh----------hhhccC
Confidence 333344444443 3457999999999999873 367765 4589999987432111000 001111
Q ss_pred hcccCCCCeeEEEECC-CCCEEEEEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEE
Q 001477 403 LLNDAAISVNRCVWGP-DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKV 481 (1071)
Q Consensus 403 ~~~~h~~~v~~~~~sp-d~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~i 481 (1071)
.-..+.+++++..|+. |-++|.++|-|.+..|||++++..-.....+-+|...|.+++|...+.+ ++++.|.||.|++
T Consensus 145 kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~-~FASvgaDGSvRm 223 (364)
T KOG0290|consen 145 KNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRD-VFASVGADGSVRM 223 (364)
T ss_pred cccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccc-eEEEecCCCcEEE
Confidence 1245778999999998 7889999999999999999997442223367799999999999998877 8999999999999
Q ss_pred EEccCCc---eeEEecCCCCCeEEEEecccCCccEEEEEecC-CeEEEEEcCCCce-eEEecCCCCcEEEEEEccCC-CE
Q 001477 482 WDVVAGR---KQYTFEGHEAPVYSVCPHHKESIQFIFSTAID-GKIKAWLYDYLGS-RVDYDAPGNWCTMMAYSADG-TR 555 (1071)
Q Consensus 482 wd~~~~~---~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d-~~i~vwd~~~~~~-~~~~~~~~~~i~~~~~s~~~-~~ 555 (1071)
+|++..+ .++.-.....+...++|++. |-+++++-..| ..|.+-|++.... ...+..|...|+.++|.|.. ..
T Consensus 224 FDLR~leHSTIIYE~p~~~~pLlRLswnkq-DpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~h 302 (364)
T KOG0290|consen 224 FDLRSLEHSTIIYEDPSPSTPLLRLSWNKQ-DPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSH 302 (364)
T ss_pred EEecccccceEEecCCCCCCcceeeccCcC-CchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCce
Confidence 9998754 23332233567888899875 44788877665 4588999998665 55889999999999999965 56
Q ss_pred EEEeccCCCCCCeEEEEeCCCCc------eeEEeecccccceeEEEEeCC-CCEEEEEe
Q 001477 556 LFSCGTSKEGESHLVEWNESEGA------IKRTYSGFRKRSLGVVQFDTT-RNRFLAAG 607 (1071)
Q Consensus 556 l~~~~~~~d~~~~i~iwd~~~~~------~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~ 607 (1071)
+.+++. |.+..+||+...- ++..+. ..+.|+.+.|++. +..++.+.
T Consensus 303 ictaGD----D~qaliWDl~q~~~~~~~dPilay~--a~~EVNqi~Ws~~~~Dwiai~~ 355 (364)
T KOG0290|consen 303 ICTAGD----DCQALIWDLQQMPRENGEDPILAYT--AGGEVNQIQWSSSQPDWIAICF 355 (364)
T ss_pred eeecCC----cceEEEEecccccccCCCCchhhhh--ccceeeeeeecccCCCEEEEEe
Confidence 777764 8889999997532 222333 2237899999964 45565554
No 200
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=2.9e-15 Score=148.27 Aligned_cols=300 Identities=14% Similarity=0.166 Sum_probs=219.0
Q ss_pred EecCCCCcEEEEEEccCCCEEEEeccCCCCCCeEEEEeCC------CCceeEEeecccccceeEEEEeCCCCEEEEEeCC
Q 001477 536 DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES------EGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE 609 (1071)
Q Consensus 536 ~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 609 (1071)
.+..|.+.|+++.|+.++++|++++. +..+++|++. +.+++.....++...|.|++|...+..+++|+.+
T Consensus 51 D~~~H~GCiNAlqFS~N~~~L~SGGD----D~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~ 126 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRFLASGGD----DMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERW 126 (609)
T ss_pred hhhhhccccceeeeccCCeEEeecCC----cceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCc
Confidence 44568889999999999999999985 7789999975 4466766666665589999999999999999999
Q ss_pred CcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCChhhhhhhhcCCccccccCCCCCCCCC
Q 001477 610 FQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSK 689 (1071)
Q Consensus 610 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 689 (1071)
++|...|+++.+.+..+........|..+..+|..+.+++.+.++.|.+||...... |...+.
T Consensus 127 ~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~-------~~~~~~---------- 189 (609)
T KOG4227|consen 127 GTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQN-------PISLVL---------- 189 (609)
T ss_pred ceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCC-------CCceee----------
Confidence 999999999999999887776667899999999999999999999999999875511 100000
Q ss_pred CccccccCCCCccccccCCCCCCCCCCCCcccccccCCCCcccccccccccccccCccceeccCCCCCcccceeeecCCC
Q 001477 690 PLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDS 769 (1071)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~ 769 (1071)
+.
T Consensus 190 -----------------------------------------------------------------------------~A- 191 (609)
T KOG4227|consen 190 -----------------------------------------------------------------------------PA- 191 (609)
T ss_pred -----------------------------------------------------------------------------ec-
Confidence 00
Q ss_pred cCCCceEEEEEecccch-hhhccccceeEEEecccccCCCCCccceeecceeccCCCCCccccccCCCCCCCCCeEEEEE
Q 001477 770 IAASKVVRLIYTNSGLS-LLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIAL 848 (1071)
Q Consensus 770 ~~~~~v~~l~~s~~g~~-l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~v~~ 848 (1071)
........+.|.|-... |++.+..+-+-+||....+... +...... .++. . ......+.|
T Consensus 192 N~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~------------~~~~~~~----~L~~--~-~~~~M~~~~ 252 (609)
T KOG4227|consen 192 NSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPV------------YQRSMFK----GLPQ--E-NTEWMGSLW 252 (609)
T ss_pred CCCccceeeeecCCCceeEEeccccCCCCceeeccccchH------------Hhhhccc----cCcc--c-chhhhheee
Confidence 01223456677776554 4556667778899876532210 0000000 0111 1 334567889
Q ss_pred ecCCcEEEEEe-CCeEEEEECCCCeEEEEEeCCC-------CCeEEEEEcCCCCCEEEEEeCCCeEEEEEccCC------
Q 001477 849 SKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPP-------PAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD------ 914 (1071)
Q Consensus 849 s~d~~~la~~~-dg~i~vwd~~~~~~~~~~~~~~-------~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~------ 914 (1071)
+|+|..+.+-- ...-.+||+-+.++..-...|. ..+.+++|.. ..-+++|+.+=.|++|.+...
T Consensus 253 ~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~--D~~v~tGSD~~~i~~WklP~~~ds~G~ 330 (609)
T KOG4227|consen 253 SPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFID--DYTVATGSDHWGIHIWKLPRANDSYGF 330 (609)
T ss_pred CCCCCeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeec--ceeeeccCcccceEEEecCCCccccCc
Confidence 99999888776 4456678887755533222233 2477889985 355999999999999997521
Q ss_pred -----------------eEEEEecCcCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 001477 915 -----------------EVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK 955 (1071)
Q Consensus 915 -----------------~~~~~l~~h~~~v~~l~~s~d~~~l~s~~~d~~v~vWd~~~ 955 (1071)
+.+.+++||..-+..+.|+|...+|++.|-.+.+++|.--.
T Consensus 331 ~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~r 388 (609)
T KOG4227|consen 331 TQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDHR 388 (609)
T ss_pred cccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheecccccc
Confidence 23567899999999999999999999999999999997543
No 201
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.70 E-value=5.1e-15 Score=164.87 Aligned_cols=197 Identities=18% Similarity=0.198 Sum_probs=149.1
Q ss_pred CCcEEEEEeCCeEEEEECCCCeEEEEEeC-CCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEccCC---eEEEEecCcCCC
Q 001477 851 NDSYVMSASGGKVSLFNMMTFKVMTMFMS-PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD---EVKTKLKGHQNR 926 (1071)
Q Consensus 851 d~~~la~~~dg~i~vwd~~~~~~~~~~~~-~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~---~~~~~l~~h~~~ 926 (1071)
.|.++++|+-..|+|||+..-.+.+.+.. ....|+++.-+-..|+++|+|..||.|++||.+.. ..+...+.|+..
T Consensus 1177 ~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~ 1256 (1387)
T KOG1517|consen 1177 SGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDV 1256 (1387)
T ss_pred CCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCc
Confidence 34455555457899999988777777654 33467777766546899999999999999998754 357778889988
Q ss_pred --eeEEEEcCCCCE-EEEEeCCCcEEEEECCCCceeeeeeecCCCCCCCCCCCceEEEEccCCCEEEEEECCeEEEEeCC
Q 001477 927 --ITGLAFSPTLNA-LVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSK 1003 (1071)
Q Consensus 927 --v~~l~~s~d~~~-l~s~~~d~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~ 1003 (1071)
|..+.+-+.|-. |++|+.||.|++||++.........+.... ......+++..+++...+|+|+.+.|+||++.
T Consensus 1257 ~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~---~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~ 1333 (1387)
T KOG1517|consen 1257 EPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHW---EYGSALTALTVHEHAPIIASGSAQLIKIYSLS 1333 (1387)
T ss_pred ccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeecc---ccCccceeeeeccCCCeeeecCcceEEEEecC
Confidence 999999887754 999999999999999884222111111111 00134799999999999999887999999997
Q ss_pred CCceeecCCCCC----CCCCeeEEEEecCCcEEEEEeCCCeEEEEEcCCCe
Q 001477 1004 LECSRSWSPKDA----LPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLR 1050 (1071)
Q Consensus 1004 ~~~~~~~~~~~~----h~~~v~~~~~s~dg~~l~t~~~Dg~i~vwd~~~~~ 1050 (1071)
++.+..+....+ ..+.++|++|.|---+||+|+.|.+|.||..+..+
T Consensus 1334 G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1334 GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred hhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 776655543221 25678999999999999999999999999877654
No 202
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=4e-16 Score=157.68 Aligned_cols=198 Identities=14% Similarity=0.187 Sum_probs=157.5
Q ss_pred EEEEEecCCcEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEccCCeEEEEecC
Q 001477 844 ACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKG 922 (1071)
Q Consensus 844 ~~v~~s~d~~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~l~~ 922 (1071)
.+++|++||..+++|+ ||++|||+..+...+.....|..+|.++.||| |+++||+.+.| ..+||++.++..++....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCC-CCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 7899999999999999 99999999988888888888999999999999 99999999999 999999999977766652
Q ss_pred --cCCCeeEEEEcCCC-----CEEEEEeCCCcEEEEECCCCceeeeeeecCCCCCCCCCCCceEEEEccCCCEEEEE-EC
Q 001477 923 --HQNRITGLAFSPTL-----NALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HE 994 (1071)
Q Consensus 923 --h~~~v~~l~~s~d~-----~~l~s~~~d~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d 994 (1071)
-......+.|+.|+ ..++....-+.|+.|++..++.-....... .......|++++.|+||+++|.| .|
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~---~~~~~~siSsl~VS~dGkf~AlGT~d 302 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRK---KIKRFKSISSLAVSDDGKFLALGTMD 302 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhh---hhhccCcceeEEEcCCCcEEEEeccC
Confidence 23346678898887 334444456678888877655321001111 11111569999999999999996 69
Q ss_pred CeEEEEeC-CCCceeecCCCCCCCCCeeEEEEecCCcEEEEEeCCCeEEEEEcCC
Q 001477 995 SQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAET 1048 (1071)
Q Consensus 995 ~~i~vwd~-~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~t~~~Dg~i~vwd~~~ 1048 (1071)
|.|.+++. +.+++... .+.|...|+.+.|+||.+++++.+.|..+.+..+.-
T Consensus 303 GsVai~~~~~lq~~~~v--k~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 303 GSVAIYDAKSLQRLQYV--KEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred CcEEEEEeceeeeeEee--hhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 99999999 55555443 366799999999999999999999999999988754
No 203
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.68 E-value=1.3e-16 Score=172.77 Aligned_cols=291 Identities=17% Similarity=0.257 Sum_probs=224.1
Q ss_pred CceeEEeecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCcE
Q 001477 577 GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGI 656 (1071)
Q Consensus 577 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v 656 (1071)
.+.++.+.+|.. .|.|+.|...|.++++|+.|..++||..+++.++....+|.+ .++.++.+.+..++++++.|..|
T Consensus 180 mk~ikrLlgH~n-aVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~--ditdlavs~~n~~iaaaS~D~vI 256 (1113)
T KOG0644|consen 180 MKNIKRLLGHRN-AVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSG--DITDLAVSSNNTMIAAASNDKVI 256 (1113)
T ss_pred HHHHHHHHhhhh-heeeeeeccccceEeecCccceeeeeeccchhhhccCCCCcc--ccchhccchhhhhhhhcccCceE
Confidence 345566778877 899999999999999999999999999999999999987765 79999999999999999999999
Q ss_pred EEEEcCChhhhhhhhcCCccccccCCCCCCCCCCccccccCCCCccccccCCCCCCCCCCCCcccccccCCCCccccccc
Q 001477 657 KILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDV 736 (1071)
Q Consensus 657 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 736 (1071)
++|.+.++ ..+..+.+|++.+..+.+.+.
T Consensus 257 rvWrl~~~-~pvsvLrghtgavtaiafsP~-------------------------------------------------- 285 (1113)
T KOG0644|consen 257 RVWRLPDG-APVSVLRGHTGAVTAIAFSPR-------------------------------------------------- 285 (1113)
T ss_pred EEEecCCC-chHHHHhccccceeeeccCcc--------------------------------------------------
Confidence 99999999 889999999988776544433
Q ss_pred ccccccccCccceeccCCCCCcccceeeecCCCcCCCceEEEEEecccchhhhccccceeEEEecccccCCCCCccceee
Q 001477 737 KPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANV 816 (1071)
Q Consensus 737 ~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~ 816 (1071)
..++.||++++||..-....-..+... ......+-++.|..++....+++.|+.-+.|.+..-
T Consensus 286 --~sss~dgt~~~wd~r~~~~~y~prp~~---~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l------------ 348 (1113)
T KOG0644|consen 286 --ASSSDDGTCRIWDARLEPRIYVPRPLK---FTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQL------------ 348 (1113)
T ss_pred --ccCCCCCceEeccccccccccCCCCCC---cccccceeeeeccccccccccccCCcccccchhhHh------------
Confidence 134557999999987111100111111 113356777888899999999999988877754310
Q ss_pred cceeccCCCCCccccccCCCCCCCCCeEEEEEecCC-cEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCC
Q 001477 817 APQLWQPPSGTLMTNDINESKPTEESAACIALSKND-SYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDN 894 (1071)
Q Consensus 817 ~~~~~~~~~~~~~~~~~~~~~h~~~~v~~v~~s~d~-~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~ 894 (1071)
.| | ...+.-+..+.|- .+.+++- +..+++|++.+|.+.+.+.+|...+..+.++|.+.
T Consensus 349 ---~~----------------~-~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ 408 (1113)
T KOG0644|consen 349 ---AW----------------R-SNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNP 408 (1113)
T ss_pred ---hh----------------h-ccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCc
Confidence 01 1 2222223333232 2444444 78899999999999999999999999999999888
Q ss_pred CEEEEEeCCCeEEEEEccCCeEEEEe-cCcCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcee
Q 001477 895 NIIAIGMEDSSVQIYNVRVDEVKTKL-KGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKL 959 (1071)
Q Consensus 895 ~~la~g~~dg~v~vwd~~~~~~~~~l-~~h~~~v~~l~~s~d~~~l~s~~~d~~v~vWd~~~~~~~ 959 (1071)
++..+++.||...|||+..|.+++.. .+|. .+..-+||+||+.++....-|.+.|.....++..
T Consensus 409 ri~msag~dgst~iwdi~eg~pik~y~~gh~-kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s~ 473 (1113)
T KOG0644|consen 409 RIAMSAGYDGSTIIWDIWEGIPIKHYFIGHG-KLVDGKFSQDGTSIALSDDHGQLYILGTGQSKSQ 473 (1113)
T ss_pred HhhhhccCCCceEeeecccCCcceeeecccc-eeeccccCCCCceEecCCCCCceEEeccCCCccc
Confidence 88889999999999999988776654 4554 4666799999999999888899999987766544
No 204
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=1e-14 Score=147.63 Aligned_cols=201 Identities=16% Similarity=0.256 Sum_probs=141.6
Q ss_pred eEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCChhhhhhhh
Q 001477 592 GVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRML 671 (1071)
Q Consensus 592 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~ 671 (1071)
.+++|+.+|..+++++.||++|||++.....+.....|. ..|.++.|+|||+.|++.+.| ..+||+.+++ ..+...
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~--~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g-~~~a~~ 223 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHH--AEVKDLDFSPDGKFLASIGAD-SARVWSVNTG-AALARK 223 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhc--CccccceeCCCCcEEEEecCC-ceEEEEeccC-chhhhc
Confidence 679999999999999999999999987766665555443 479999999999999999999 9999999988 222221
Q ss_pred cCCccccccCCCCCCCCCCccccccCCCCccccccCCCCCCCCCCCCcccccccCCCCcccccccccccccccCccceec
Q 001477 672 EGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWR 751 (1071)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~ 751 (1071)
....
T Consensus 224 t~~~---------------------------------------------------------------------------- 227 (398)
T KOG0771|consen 224 TPFS---------------------------------------------------------------------------- 227 (398)
T ss_pred CCcc----------------------------------------------------------------------------
Confidence 1100
Q ss_pred cCCCCCcccceeeecCCCcCCCceEEEEEeccc-----chhhhccccceeEEEecccccCCCCCccceeecceeccCCCC
Q 001477 752 IPDISDPSQIKALRLPDSIAASKVVRLIYTNSG-----LSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSG 826 (1071)
Q Consensus 752 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g-----~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~ 826 (1071)
.......+.|+.|+ ..++.....+.++.|++. +|+-..-
T Consensus 228 -------------------k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~-----------------~w~~~~~ 271 (398)
T KOG0771|consen 228 -------------------KDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDIS-----------------LWSGSNF 271 (398)
T ss_pred -------------------cchhhhhceecccCCCceEEEEEecCCCCceeEEEee-----------------eeccccc
Confidence 01111223333333 111112223445555432 3333211
Q ss_pred CccccccCCCCCCCCCeEEEEEecCCcEEEEEe-CCeEEEEECCCCeEEEEEe-CCCCCeEEEEEcCCCCCEEEEEeCCC
Q 001477 827 TLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFM-SPPPAATFLAFHPQDNNIIAIGMEDS 904 (1071)
Q Consensus 827 ~~~~~~~~~~~h~~~~v~~v~~s~d~~~la~~~-dg~i~vwd~~~~~~~~~~~-~~~~~i~~l~~sp~~~~~la~g~~dg 904 (1071)
-........ ...|+++++|+||+++|.|+ ||.|.|++..+.+.++..+ .|...|+.++|+| +.+++++.+.|.
T Consensus 272 l~~~~~~~~----~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~P-dsr~~~svSs~~ 346 (398)
T KOG0771|consen 272 LRLRKKIKR----FKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSP-DSRYLASVSSDN 346 (398)
T ss_pred cchhhhhhc----cCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcC-CcCcccccccCC
Confidence 111111222 56899999999999999999 9999999999888777654 5899999999999 899999999998
Q ss_pred eEEEEEccC
Q 001477 905 SVQIYNVRV 913 (1071)
Q Consensus 905 ~v~vwd~~~ 913 (1071)
...|..+.-
T Consensus 347 ~~~v~~l~v 355 (398)
T KOG0771|consen 347 EAAVTKLAV 355 (398)
T ss_pred ceeEEEEee
Confidence 888887653
No 205
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.67 E-value=7.9e-12 Score=127.74 Aligned_cols=198 Identities=18% Similarity=0.199 Sum_probs=131.8
Q ss_pred CCCeEEEEEecCCcEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCCEEEEEeCCC----eEEEEEccCC
Q 001477 840 EESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDS----SVQIYNVRVD 914 (1071)
Q Consensus 840 ~~~v~~v~~s~d~~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg----~v~vwd~~~~ 914 (1071)
-+.|.++..++||++++++. ..++.++|+++++....-+...+-|+.++||| +++++|.+--+| .|++||+.++
T Consensus 401 lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~-nsr~iAYafP~gy~tq~Iklydm~~~ 479 (668)
T COG4946 401 LGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHP-NSRWIAYAFPEGYYTQSIKLYDMDGG 479 (668)
T ss_pred ccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcC-CceeEEEecCcceeeeeEEEEecCCC
Confidence 56789999999999999998 68999999999988777677778899999999 999999988776 6899999998
Q ss_pred eEEEEecCcCCCeeEEEEcCCCCEEEEEe-------CCCcEEEEECCCCceeeeeeecCCCCCCCCC-------------
Q 001477 915 EVKTKLKGHQNRITGLAFSPTLNALVSSG-------ADAQLCMWSIDKWEKLKSRFIQAPAGRQSPL------------- 974 (1071)
Q Consensus 915 ~~~~~l~~h~~~v~~l~~s~d~~~l~s~~-------~d~~v~vWd~~~~~~~~~~~~~~~~~~~~~~------------- 974 (1071)
+....-. ..+.-.+-+|.||+++|.--+ .|..+.=+... ...+........+...+.
T Consensus 480 Kiy~vTT-~ta~DfsPaFD~d~ryLYfLs~RsLdPs~Drv~fnf~f~--~vskPylv~L~~g~~sP~~q~p~~~~~ea~e 556 (668)
T COG4946 480 KIYDVTT-PTAYDFSPAFDPDGRYLYFLSARSLDPSNDRVIFNFSFQ--RVSKPYLVVLGRGYYSPFNQPPDEANSEAGE 556 (668)
T ss_pred eEEEecC-CcccccCcccCCCCcEEEEEeccccCCCCCeeEEEEEEe--eeccceEEEecCCCCChhhcCchhcCccccc
Confidence 8655433 223345678999999887554 34333222221 111222222111111110
Q ss_pred -----------------CCceEEEEccCCCEEEEE---------------ECCeEEEEeCCCCceeecCCCCCCCCCeeE
Q 001477 975 -----------------VGETKVQFHNDQTHLLVV---------------HESQISVYDSKLECSRSWSPKDALPAPISS 1022 (1071)
Q Consensus 975 -----------------~~v~~~~~s~dg~~l~~~---------------~d~~i~vwd~~~~~~~~~~~~~~h~~~v~~ 1022 (1071)
+.-.+++=..+|+.+..+ ..|.+.+||++.+....+ ...+++
T Consensus 557 ~dle~ie~r~eP~pVee~dY~sI~~lk~~killfs~pi~Gefs~yy~gq~~kG~l~~ydletkk~~e~------k~nvss 630 (668)
T COG4946 557 VDLEGIEDRVEPFPVEEGDYRSIAGLKNGKILLFSYPIHGEFSQYYWGQPEKGRLEKYDLETKKVEEY------KDNVSS 630 (668)
T ss_pred eehhhhcccccccccCccceeEeeecCCCeEEEEEeeccchhhhhhcCCCccceEEEEecchhhHHHH------hcccce
Confidence 111122222233333221 124566666644444443 457899
Q ss_pred EEEecCCcEEEEEeCCCeEEEEEcCC
Q 001477 1023 AIYSCDGLLVYAGFCDGAIGVFDAET 1048 (1071)
Q Consensus 1023 ~~~s~dg~~l~t~~~Dg~i~vwd~~~ 1048 (1071)
+..|+|++.+.. -.||.++++|++.
T Consensus 631 ~rlS~D~s~ilv-k~d~kl~~f~vek 655 (668)
T COG4946 631 FRLSSDGSKILV-KLDGKLRLFDVEK 655 (668)
T ss_pred EEEcCCCCEEEE-EeCCeEEEEeccc
Confidence 999999999887 7899999999986
No 206
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.67 E-value=1.2e-14 Score=162.03 Aligned_cols=291 Identities=13% Similarity=0.175 Sum_probs=204.7
Q ss_pred CeEEEEeecCCCeEEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeEEEECC--CCCEEEE
Q 001477 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP--DGLMLGV 425 (1071)
Q Consensus 348 ~V~~~~fsp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~sp--d~~~la~ 425 (1071)
.-..+.|+|-.+ .++++...-.|++||.+.++.+... +.. ......|+.+.+-. |..++.+
T Consensus 1066 ~pk~~~~hpf~p-~i~~ad~r~~i~vwd~e~~~~l~~F-----~n~-----------~~~~t~Vs~l~liNe~D~aLlLt 1128 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEP-QIAAADDRERIRVWDWEKGRLLNGF-----DNG-----------AFPDTRVSDLELINEQDDALLLT 1128 (1387)
T ss_pred CCceeeecCCCc-eeEEcCCcceEEEEecccCceeccc-----cCC-----------CCCCCccceeeeecccchhheee
Confidence 466788999887 5666766679999999998876531 110 12345788888875 5568999
Q ss_pred EeCCCeEEEEEecCC--Cc---cceeeEeeccc----CCEEEEEEecCCCceEEEEEeCCCcEEEEEccCCceeEEecC-
Q 001477 426 AFSKHIVHLYTYNPT--GE---LRQHLEIDAHV----GGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG- 495 (1071)
Q Consensus 426 ~~~dg~i~iwd~~~~--~~---~~~~~~~~~h~----~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~- 495 (1071)
|+.||.|+||+--.. +. +.....+.++. +.=.-++|..... +|+++|.-+.|+|||.....+++.+..
T Consensus 1129 as~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G--~Ll~tGd~r~IRIWDa~~E~~~~diP~~ 1206 (1387)
T KOG1517|consen 1129 ASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSG--HLLVTGDVRSIRIWDAHKEQVVADIPYG 1206 (1387)
T ss_pred eccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCC--eEEecCCeeEEEEEecccceeEeecccC
Confidence 999999999974322 11 21111222221 1113356766666 566777789999999988887776653
Q ss_pred CCCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCce---eEEecCCCCc--EEEEEEccCCCE-EEEeccCCCCCCeE
Q 001477 496 HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS---RVDYDAPGNW--CTMMAYSADGTR-LFSCGTSKEGESHL 569 (1071)
Q Consensus 496 h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~---~~~~~~~~~~--i~~~~~s~~~~~-l~~~~~~~d~~~~i 569 (1071)
-..-|+++.-+-. .|+.++.|..||.|++||.+.... +.....|... |..+.+.+.|-. |++++. +|.|
T Consensus 1207 s~t~vTaLS~~~~-~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~----~G~I 1281 (1387)
T KOG1517|consen 1207 SSTLVTALSADLV-HGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQ----DGDI 1281 (1387)
T ss_pred CCccceeeccccc-CCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeecc----CCeE
Confidence 4456777665443 368999999999999999887554 3355666665 999999887765 888876 7779
Q ss_pred EEEeCCCCceeE--Eeeccc--ccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecC-----CCCCCcceEEE
Q 001477 570 VEWNESEGAIKR--TYSGFR--KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD-----GGLPASPRLRF 640 (1071)
Q Consensus 570 ~iwd~~~~~~~~--~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~v~~~~~ 640 (1071)
++||++...... ++..|. +...+++..+++...+++|+. +.|+||++.. +.+..+... .....+.|++|
T Consensus 1282 ~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G-~~l~~~k~n~~F~~q~~gs~scL~F 1359 (1387)
T KOG1517|consen 1282 QLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSG-EQLNIIKYNPGFMGQRIGSVSCLAF 1359 (1387)
T ss_pred EEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecCh-hhhcccccCcccccCcCCCcceeee
Confidence 999999742221 222222 224889999999999999988 9999999874 333333221 12346799999
Q ss_pred cCCCCEEEEEeCCCcEEEEEcCCh
Q 001477 641 NKEGSLLAVTTSDNGIKILANSDG 664 (1071)
Q Consensus 641 s~~~~~l~~~~~dg~v~iw~~~~~ 664 (1071)
+|..-++|+|+.|.+|.||....+
T Consensus 1360 HP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1360 HPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred cchhHhhhhccCCceEEEeecCCc
Confidence 999999999999999999987654
No 207
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.67 E-value=8.8e-15 Score=165.09 Aligned_cols=235 Identities=11% Similarity=0.082 Sum_probs=162.5
Q ss_pred CCeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeEEEECCCCCEEEEEeCC---CeEEEEEecCCCccc
Q 001477 368 VGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSK---HIVHLYTYNPTGELR 444 (1071)
Q Consensus 368 dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~la~~~~d---g~i~iwd~~~~~~~~ 444 (1071)
+..|.+||........ +..|...+.+.+|||||+.|+.++.+ ..|++||+.+++...
T Consensus 183 ~~~i~i~d~dg~~~~~--------------------lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~ 242 (429)
T PRK01742 183 PYEVRVADYDGFNQFI--------------------VNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV 242 (429)
T ss_pred eEEEEEECCCCCCceE--------------------eccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE
Confidence 4689999986543211 45678889999999999999988654 479999998875321
Q ss_pred eeeEeecccCCEEEEEEecCCCceEEEEE-eCCCcEEEE--EccCCceeEEecCCCCCeEEEEecccCCccEEEE-EecC
Q 001477 445 QHLEIDAHVGGVNDIAFAHPNKQLCIVTC-GDDKMIKVW--DVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFS-TAID 520 (1071)
Q Consensus 445 ~~~~~~~h~~~v~~~~~s~d~~~~~l~s~-~~d~~i~iw--d~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s-~~~d 520 (1071)
...+.+ ....++|+|||+ .|+.+ +.++.+.|| |+.+++ ...+..+...+.+..|+|++ ..++. +..+
T Consensus 243 -l~~~~g---~~~~~~wSPDG~--~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG--~~i~f~s~~~ 313 (429)
T PRK01742 243 -VASFRG---HNGAPAFSPDGS--RLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDG--QSILFTSDRS 313 (429)
T ss_pred -EecCCC---ccCceeECCCCC--EEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCC--CEEEEEECCC
Confidence 112333 345789999999 45554 567765555 665555 45566677778889999865 65554 4467
Q ss_pred CeEEEEEcCCCceeEEecCCCCcEEEEEEccCCCEEEEeccCCCCCCeEEEEeCCCCceeEEeecccccceeEEEEeCCC
Q 001477 521 GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR 600 (1071)
Q Consensus 521 ~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 600 (1071)
+...+|+++..........+.. ....|+|||++++..+. ..+.+||+.+++........ ....+.|+|+|
T Consensus 314 g~~~I~~~~~~~~~~~~l~~~~--~~~~~SpDG~~ia~~~~-----~~i~~~Dl~~g~~~~lt~~~---~~~~~~~sPdG 383 (429)
T PRK01742 314 GSPQVYRMSASGGGASLVGGRG--YSAQISADGKTLVMING-----DNVVKQDLTSGSTEVLSSTF---LDESPSISPNG 383 (429)
T ss_pred CCceEEEEECCCCCeEEecCCC--CCccCCCCCCEEEEEcC-----CCEEEEECCCCCeEEecCCC---CCCCceECCCC
Confidence 8888998765333222222222 45789999999988763 23777999988754332222 23457899999
Q ss_pred CEEEEEeCCCcEEEEeCC--CCceeEEEecCCCCCCcceEEEcCC
Q 001477 601 NRFLAAGDEFQIKFWDMD--NMNMLTTVDADGGLPASPRLRFNKE 643 (1071)
Q Consensus 601 ~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~v~~~~~s~~ 643 (1071)
++|+.++.++.+.+|.+. ++.....+..+.+ .+...+|+|-
T Consensus 384 ~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g--~~~~p~wsp~ 426 (429)
T PRK01742 384 IMIIYSSTQGLGKVLQLVSADGRFKARLPGSDG--QVKFPAWSPY 426 (429)
T ss_pred CEEEEEEcCCCceEEEEEECCCCceEEccCCCC--CCCCcccCCC
Confidence 999999989988888753 5777777765443 5788899884
No 208
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.65 E-value=3e-13 Score=146.75 Aligned_cols=334 Identities=13% Similarity=0.140 Sum_probs=208.0
Q ss_pred eEEEEEeCCCcEEEEEccCCceeEEecCCCCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCceeEEecCCCCcEEEE
Q 001477 468 LCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMM 547 (1071)
Q Consensus 468 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~ 547 (1071)
+++++-..++.|.+.|..+.+.+.++......-..+.++|++ .++++++.||.|.++|+.+.+....+... ....++
T Consensus 7 l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dg--r~~yv~~rdg~vsviD~~~~~~v~~i~~G-~~~~~i 83 (369)
T PF02239_consen 7 LFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDG--RYLYVANRDGTVSVIDLATGKVVATIKVG-GNPRGI 83 (369)
T ss_dssp EEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-S--SEEEEEETTSEEEEEETTSSSEEEEEE-S-SEEEEE
T ss_pred EEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCC--CEEEEEcCCCeEEEEECCcccEEEEEecC-CCcceE
Confidence 355677789999999999999999998655444556777654 88999999999999999999988777654 356789
Q ss_pred EEccCCCEEEEeccCCCCCCeEEEEeCCCCceeEEeeccc------ccceeEEEEeCCCCEEEEE-eCCCcEEEEeCCCC
Q 001477 548 AYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFR------KRSLGVVQFDTTRNRFLAA-GDEFQIKFWDMDNM 620 (1071)
Q Consensus 548 ~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~ 620 (1071)
++|+||++++++.. ..+.+.++|.++.++++.+.... ...+..+..+|.+..++.. -+.+.|.+-|....
T Consensus 84 ~~s~DG~~~~v~n~---~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~ 160 (369)
T PF02239_consen 84 AVSPDGKYVYVANY---EPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDP 160 (369)
T ss_dssp EE--TTTEEEEEEE---ETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTS
T ss_pred EEcCCCCEEEEEec---CCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccc
Confidence 99999999998764 36789999999999998876542 1246677778888855554 45688888898776
Q ss_pred ceeEEEecCCCCCCcceEEEcCCCCEEEEE-eCCCcEEEEEcCChhhhhhhhcCCccccccCCCCCCCCCCccccccCCC
Q 001477 621 NMLTTVDADGGLPASPRLRFNKEGSLLAVT-TSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPA 699 (1071)
Q Consensus 621 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 699 (1071)
+.+..-..... .......|+|++++++++ ..++.|-++|..++ +....+.
T Consensus 161 ~~~~~~~i~~g-~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~-k~v~~i~--------------------------- 211 (369)
T PF02239_consen 161 KNLKVTTIKVG-RFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTG-KLVALID--------------------------- 211 (369)
T ss_dssp SCEEEEEEE---TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTT-EEEEEEE---------------------------
T ss_pred cccceeeeccc-ccccccccCcccceeeecccccceeEEEeeccc-eEEEEee---------------------------
Confidence 54432221111 245789999999987665 45678888987765 1111100
Q ss_pred CccccccCCCCCCCCCCCCcccccccCCCCcccccccccccccccCccceeccCCCCCcccceeeecCCCcCCCceEEEE
Q 001477 700 SNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLI 779 (1071)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 779 (1071)
.. .. .|..+...+-
T Consensus 212 ----------------------------------------------------~g--~~------------p~~~~~~~~p 225 (369)
T PF02239_consen 212 ----------------------------------------------------TG--KK------------PHPGPGANFP 225 (369)
T ss_dssp -----------------------------------------------------S--SS------------BEETTEEEEE
T ss_pred ----------------------------------------------------cc--cc------------cccccccccc
Confidence 00 00 0111111110
Q ss_pred EecccchhhhccccceeEEEecccccCCCCCccceeecceeccCCCCCccccccCCCCCCCCCeEEEEEecCCcEE-EEE
Q 001477 780 YTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYV-MSA 858 (1071)
Q Consensus 780 ~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~v~~s~d~~~l-a~~ 858 (1071)
.|. .+++... +..+... ...
T Consensus 226 -hp~--------------------------------------------------------~g~vw~~--~~~~~~~~~~i 246 (369)
T PF02239_consen 226 -HPG--------------------------------------------------------FGPVWAT--SGLGYFAIPLI 246 (369)
T ss_dssp -ETT--------------------------------------------------------TEEEEEE--EBSSSSEEEEE
T ss_pred -CCC--------------------------------------------------------cceEEee--ccccceecccc
Confidence 010 0111111 1122222 222
Q ss_pred eCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCCEEEEE----eCCCeEEEEEccCCeEEEEecCcC-CCeeEEEEc
Q 001477 859 SGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIG----MEDSSVQIYNVRVDEVKTKLKGHQ-NRITGLAFS 933 (1071)
Q Consensus 859 ~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g----~~dg~v~vwd~~~~~~~~~l~~h~-~~v~~l~~s 933 (1071)
+.+.+.+||..+++.++++....+. .-+..+| +++++.+. ...++|.|+|.++.+.+..+.... ..+..+.|+
T Consensus 247 g~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP-~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~ 324 (369)
T PF02239_consen 247 GTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHP-DSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFN 324 (369)
T ss_dssp E--TTT-STTTBTSEEEEEE-SSSS---EE--T-T-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-
T ss_pred cCCccccchhhcCeEEEEEECCCCc-ceeecCC-CCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEEC
Confidence 2445668999999999999987766 7888899 88888887 455899999999998888775332 358999999
Q ss_pred CCCCEEEEEeCC--CcEEEEECCCCceeeeee
Q 001477 934 PTLNALVSSGAD--AQLCMWSIDKWEKLKSRF 963 (1071)
Q Consensus 934 ~d~~~l~s~~~d--~~v~vWd~~~~~~~~~~~ 963 (1071)
+||+.+..+..+ +.|.+||..+.+.++...
T Consensus 325 ~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 325 PDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred CCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 999976655433 379999999988775543
No 209
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.65 E-value=1.6e-14 Score=140.34 Aligned_cols=237 Identities=13% Similarity=0.139 Sum_probs=179.6
Q ss_pred CCCeEEEEeecCCCeEEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeEEEECCCCCEEEE
Q 001477 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1071)
Q Consensus 346 ~~~V~~~~fsp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~la~ 425 (1071)
..+|+|.+|++|+. .+|++.....|.||.......- ...+.+..|...|+++.|+|..+.|++
T Consensus 10 ~~pitchAwn~drt-~iAv~~~~~evhiy~~~~~~~w----------------~~~htls~Hd~~vtgvdWap~snrIvt 72 (361)
T KOG1523|consen 10 LEPITCHAWNSDRT-QIAVSPNNHEVHIYSMLGADLW----------------EPAHTLSEHDKIVTGVDWAPKSNRIVT 72 (361)
T ss_pred cCceeeeeecCCCc-eEEeccCCceEEEEEecCCCCc----------------eeceehhhhCcceeEEeecCCCCceeE
Confidence 46999999999997 6888888899999998766511 112237789999999999999999999
Q ss_pred EeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccCCcee----EEecCCCCCeE
Q 001477 426 AFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ----YTFEGHEAPVY 501 (1071)
Q Consensus 426 ~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~----~~~~~h~~~v~ 501 (1071)
|+.|..-++|....+...+....+..+...++++.|+|.++ .+++|+.-+.|.+|-.+...-- +.-+.+...|.
T Consensus 73 cs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~en--kFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~ 150 (361)
T KOG1523|consen 73 CSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKEN--KFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVT 150 (361)
T ss_pred ccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCc--eEEeccCccEEEEEEEecccceehhhhhCCcccccee
Confidence 99999999999977777777777888999999999999999 7999999999999987654321 12234678899
Q ss_pred EEEecccCCccEEEEEecCCeEEEEEcC-----CC-------------ceeEEecCCCCcEEEEEEccCCCEEEEeccCC
Q 001477 502 SVCPHHKESIQFIFSTAIDGKIKAWLYD-----YL-------------GSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK 563 (1071)
Q Consensus 502 ~i~~~~~~~~~~l~s~~~d~~i~vwd~~-----~~-------------~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~ 563 (1071)
++.|+|++ -+|++|+.|+..+++..- .. ....++....+.+..+.|+|+|..|+..+.
T Consensus 151 sldWhpnn--VLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~H-- 226 (361)
T KOG1523|consen 151 SLDWHPNN--VLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGH-- 226 (361)
T ss_pred eeeccCCc--ceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecC--
Confidence 99999975 789999999999998531 11 111233456779999999999999998874
Q ss_pred CCCCeEEEEeCCCCc-eeEEeecccccceeEEEEeCCCCEEEEEeCC
Q 001477 564 EGESHLVEWNESEGA-IKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE 609 (1071)
Q Consensus 564 d~~~~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 609 (1071)
+..+.+-|..... .+.......- +..++.|-.+. .+++++.|
T Consensus 227 --ds~v~~~da~~p~~~v~~~~~~~l-P~ls~~~ise~-~vv~ag~~ 269 (361)
T KOG1523|consen 227 --DSTVSFVDAAGPSERVQSVATAQL-PLLSVSWISEN-SVVAAGYD 269 (361)
T ss_pred --CCceEEeecCCCchhccchhhccC-CceeeEeecCC-ceeecCCC
Confidence 7778888876554 2333332222 55666665543 34444444
No 210
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.65 E-value=3.9e-14 Score=160.72 Aligned_cols=255 Identities=13% Similarity=0.092 Sum_probs=182.4
Q ss_pred cccCCCCeeEEEECCCC-CEEEEEeCCCeEEEEEecCC----CccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCc
Q 001477 404 LNDAAISVNRCVWGPDG-LMLGVAFSKHIVHLYTYNPT----GELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKM 478 (1071)
Q Consensus 404 ~~~h~~~v~~~~~spd~-~~la~~~~dg~i~iwd~~~~----~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~ 478 (1071)
+..|...|..++.+++. .++++||.||+|++|+...- ...+...++..-..++.++.+.+.+. .+|.++.||.
T Consensus 1044 L~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~--~~Av~t~DG~ 1121 (1431)
T KOG1240|consen 1044 LHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD--QFAVSTKDGS 1121 (1431)
T ss_pred hhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC--eEEEEcCCCe
Confidence 56788899999988755 99999999999999998642 22333334444567899999999998 7899999999
Q ss_pred EEEEEccCC--ce-----eEEecC-CCCCeEEE-EecccCCccEEEEEecCCeEEEEEcCCCceeEE--ecCCCCcEEEE
Q 001477 479 IKVWDVVAG--RK-----QYTFEG-HEAPVYSV-CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD--YDAPGNWCTMM 547 (1071)
Q Consensus 479 i~iwd~~~~--~~-----~~~~~~-h~~~v~~i-~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~--~~~~~~~i~~~ 547 (1071)
|++.++... +. ...... ..+.+.++ ++........++.+..-+.|..||++....... .....+.|+++
T Consensus 1122 v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi 1201 (1431)
T KOG1240|consen 1122 VRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSI 1201 (1431)
T ss_pred EEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEE
Confidence 999998762 21 111111 23334444 343322223788888999999999988766553 44556799999
Q ss_pred EEccCCCEEEEeccCCCCCCeEEEEeCCCCceeEEeecccccceeEEEEeCCC---CEEEEEe--CCCcEEEEeCCCCce
Q 001477 548 AYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR---NRFLAAG--DEFQIKFWDMDNMNM 622 (1071)
Q Consensus 548 ~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~--~dg~i~iwd~~~~~~ 622 (1071)
+.+|.+.+++.|+. .|.+.+||++-+.++.........++..++.+|-. ...++++ ..+.|.+|++.+|..
T Consensus 1202 ~idp~~~WlviGts----~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~ 1277 (1431)
T KOG1240|consen 1202 VIDPWCNWLVIGTS----RGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLR 1277 (1431)
T ss_pred EecCCceEEEEecC----CceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcc
Confidence 99999999999985 78899999999888887765544577777776643 4555543 578899999999876
Q ss_pred eEEEecCCC-----------------CCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCh
Q 001477 623 LTTVDADGG-----------------LPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1071)
Q Consensus 623 ~~~~~~~~~-----------------~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~ 664 (1071)
...+-.... ......+.+...+..+.+|+.|..|+.||....
T Consensus 1278 ~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1278 QTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred eEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCc
Confidence 665532211 011122334344568899999999999998766
No 211
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.64 E-value=9.2e-13 Score=142.98 Aligned_cols=274 Identities=10% Similarity=0.062 Sum_probs=169.0
Q ss_pred cEE-EEEecCCeEEEEEcCCCceeEEecCCCCcEEEEEEccCCCEEEEeccCCCCCCeEEEEeCCCCceeEEeecccccc
Q 001477 512 QFI-FSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRS 590 (1071)
Q Consensus 512 ~~l-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~ 590 (1071)
+++ ++-..++.|.+.|..+.+....+......-..+.++|||+++++++. ++.|.++|+.+++.+.++.... .
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~r----dg~vsviD~~~~~~v~~i~~G~--~ 79 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANR----DGTVSVIDLATGKVVATIKVGG--N 79 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEET----TSEEEEEETTSSSEEEEEE-SS--E
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcC----CCeEEEEECCcccEEEEEecCC--C
Confidence 444 56667899999999998888888766555556789999999998864 7789999999999999988755 4
Q ss_pred eeEEEEeCCCCEEEEEe-CCCcEEEEeCCCCceeEEEecCCC-----CCCcceEEEcCCCCEEEEEeC-CCcEEEEEcCC
Q 001477 591 LGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGG-----LPASPRLRFNKEGSLLAVTTS-DNGIKILANSD 663 (1071)
Q Consensus 591 v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~-----~~~v~~~~~s~~~~~l~~~~~-dg~v~iw~~~~ 663 (1071)
...+++++||++++++. .++.+.++|.++.+++..+...+. ...+..+..+|....++..-. .+.|.+.|..+
T Consensus 80 ~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d 159 (369)
T PF02239_consen 80 PRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSD 159 (369)
T ss_dssp EEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTT
T ss_pred cceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecc
Confidence 57799999999999876 789999999999999988764321 124455666666664443333 35555544322
Q ss_pred hhhhhhhhcCCccccccCCCCCCCCCCccccccCCCCccccccCCCCCCCCCCCCcccccccCCCCcccccccccccccc
Q 001477 664 GVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAED 743 (1071)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 743 (1071)
...
T Consensus 160 ~~~----------------------------------------------------------------------------- 162 (369)
T PF02239_consen 160 PKN----------------------------------------------------------------------------- 162 (369)
T ss_dssp SSC-----------------------------------------------------------------------------
T ss_pred ccc-----------------------------------------------------------------------------
Confidence 100
Q ss_pred cCccceeccCCCCCcccceeeecCCCcCCCceEEEEEecccchhhhccccceeEEEecccccCCCCCccceeecceeccC
Q 001477 744 VDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQP 823 (1071)
Q Consensus 744 ~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~ 823 (1071)
. .++.
T Consensus 163 -------------------------------~-------------------~~~~------------------------- 167 (369)
T PF02239_consen 163 -------------------------------L-------------------KVTT------------------------- 167 (369)
T ss_dssp -------------------------------E-------------------EEEE-------------------------
T ss_pred -------------------------------c-------------------ceee-------------------------
Confidence 0 0000
Q ss_pred CCCCccccccCCCCCCCCCeEEEEEecCCcEEEEEe--CCeEEEEECCCCeEEEEEeC----CCCCeEEEEEcCC-----
Q 001477 824 PSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS--GGKVSLFNMMTFKVMTMFMS----PPPAATFLAFHPQ----- 892 (1071)
Q Consensus 824 ~~~~~~~~~~~~~~h~~~~v~~v~~s~d~~~la~~~--dg~i~vwd~~~~~~~~~~~~----~~~~i~~l~~sp~----- 892 (1071)
+. . ........|+|++++++++. .+.|.++|.++++....+.. |..+...+ .+|.
T Consensus 168 ---------i~---~-g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~-php~~g~vw 233 (369)
T PF02239_consen 168 ---------IK---V-GRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF-PHPGFGPVW 233 (369)
T ss_dssp ---------EE------TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE-EETTTEEEE
T ss_pred ---------ec---c-cccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccc-cCCCcceEE
Confidence 00 0 22344577888888877765 67888999888887766542 22333322 1221
Q ss_pred ----CCCEEEEEeCCCeEEEEEccCCeEEEEecCcCCCeeEEEEcCCCCEEEEE----eCCCcEEEEECCCCce
Q 001477 893 ----DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSS----GADAQLCMWSIDKWEK 958 (1071)
Q Consensus 893 ----~~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~~~v~~l~~s~d~~~l~s~----~~d~~v~vWd~~~~~~ 958 (1071)
.+...++.-....+.+||..+.+.++++....++ .-+..+|+++++... ...++|.++|.++.+.
T Consensus 234 ~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~ 306 (369)
T PF02239_consen 234 ATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKV 306 (369)
T ss_dssp EEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEE
T ss_pred eeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcce
Confidence 1222222222335668888899999999877666 778889999999988 3457899999988653
No 212
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=3.7e-14 Score=148.04 Aligned_cols=287 Identities=11% Similarity=0.135 Sum_probs=213.6
Q ss_pred eeEEeecCCCCeEEEEeecCCCeEEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhhhcccC--CCCeeEEE
Q 001477 338 TVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDA--AISVNRCV 415 (1071)
Q Consensus 338 ~~~~~~~h~~~V~~~~fsp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h--~~~v~~~~ 415 (1071)
+.++.+.++..-+.+..||||++++|+|..--.|++||+..-.... .-| ...|.-.-
T Consensus 43 eLiQdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKF---------------------ERhlDae~V~fei 101 (703)
T KOG2321|consen 43 ELIQDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKF---------------------ERHLDAEVVDFEI 101 (703)
T ss_pred HHHHhcCCccccceeEecCCCcEEEEecccCCceEEEEcccceeee---------------------eecccccceeEEE
Confidence 3456677888899999999999999999999999999998765432 223 33455556
Q ss_pred ECCCCCEEEEEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccCCceeEEecC
Q 001477 416 WGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG 495 (1071)
Q Consensus 416 ~spd~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 495 (1071)
.|-|-..++.-..|.+|.+...-+ .-. .+. -...-.+++++.-.-. |..++....|+-++++.|+.+..|..
T Consensus 102 LsDD~SK~v~L~~DR~IefHak~G-~hy----~~R-IP~~GRDm~y~~~scD--ly~~gsg~evYRlNLEqGrfL~P~~~ 173 (703)
T KOG2321|consen 102 LSDDYSKSVFLQNDRTIEFHAKYG-RHY----RTR-IPKFGRDMKYHKPSCD--LYLVGSGSEVYRLNLEQGRFLNPFET 173 (703)
T ss_pred eccchhhheEeecCceeeehhhcC-eee----eee-cCcCCccccccCCCcc--EEEeecCcceEEEEcccccccccccc
Confidence 666766677767787776644322 100 110 1122345565544432 44555566899999999999999988
Q ss_pred CCCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCceeEEecC------CCC-----cEEEEEEccCCCEEEEeccCCC
Q 001477 496 HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA------PGN-----WCTMMAYSADGTRLFSCGTSKE 564 (1071)
Q Consensus 496 h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~------~~~-----~i~~~~~s~~~~~l~~~~~~~d 564 (1071)
..+.++++.+++.. .+|++|+.+|.|.+||.+.......+.. +.. .|+++.|+.+|-.+++|+.
T Consensus 174 ~~~~lN~v~in~~h--gLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts--- 248 (703)
T KOG2321|consen 174 DSGELNVVSINEEH--GLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTS--- 248 (703)
T ss_pred ccccceeeeecCcc--ceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeecc---
Confidence 88999999999876 7999999999999999988766554332 222 5999999999999999986
Q ss_pred CCCeEEEEeCCCCceeEEeecccccceeEEEEeCC--CCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcC
Q 001477 565 GESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTT--RNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK 642 (1071)
Q Consensus 565 ~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 642 (1071)
.|.+.+||+++.+++..-.....-+|..+.|.+. ++.+++. ....++|||-.+|+....+... ..++.+++-|
T Consensus 249 -~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEpt---~~lND~C~~p 323 (703)
T KOG2321|consen 249 -TGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEPT---SDLNDFCFVP 323 (703)
T ss_pred -CCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEec-chHHhhhcccccCCceeecccc---CCcCceeeec
Confidence 8889999999988876554444447888999776 3445554 4578999999999999888654 3589999999
Q ss_pred CCCEEEEEeCCCcEEEEEcCC
Q 001477 643 EGSLLAVTTSDNGIKILANSD 663 (1071)
Q Consensus 643 ~~~~l~~~~~dg~v~iw~~~~ 663 (1071)
++.+++++-.++.+..|=+..
T Consensus 324 ~sGm~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 324 GSGMFFTANESSKMHTYYIPS 344 (703)
T ss_pred CCceEEEecCCCcceeEEccc
Confidence 999999999998888776543
No 213
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.62 E-value=1.1e-13 Score=156.99 Aligned_cols=270 Identities=13% Similarity=0.185 Sum_probs=185.7
Q ss_pred cceeeEEeec-CCCCeEEEEeecCCCeEEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeE
Q 001477 335 LTKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNR 413 (1071)
Q Consensus 335 ~~~~~~~~~~-h~~~V~~~~fsp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~ 413 (1071)
..+..+..+. |...|..++.++....++++||.||+|++||...-..-. ..++. ...+...+..+.+
T Consensus 1036 p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~-~s~rS-----------~ltys~~~sr~~~ 1103 (1431)
T KOG1240|consen 1036 PRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEG-GSARS-----------ELTYSPEGSRVEK 1103 (1431)
T ss_pred ccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCc-ceeee-----------eEEEeccCCceEE
Confidence 3566777777 888899999887763489999999999999986432210 01110 0012225678999
Q ss_pred EEECCCCCEEEEEeCCCeEEEEEecCCCc--cce--ee--EeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccCC
Q 001477 414 CVWGPDGLMLGVAFSKHIVHLYTYNPTGE--LRQ--HL--EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG 487 (1071)
Q Consensus 414 ~~~spd~~~la~~~~dg~i~iwd~~~~~~--~~~--~~--~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~ 487 (1071)
+...+.|+.+|+++.||.|++.+++.... ... .. ........|..-+|....+...++.+..-+.|..||+++.
T Consensus 1104 vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~ 1183 (1431)
T KOG1240|consen 1104 VTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMR 1183 (1431)
T ss_pred EEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhh
Confidence 99999999999999999999999876211 110 00 1111222344445554444336888888999999999887
Q ss_pred ceeEEec--CCCCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCceeEEecCC-CCcEEEEEEcc---CCCEEEEecc
Q 001477 488 RKQYTFE--GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP-GNWCTMMAYSA---DGTRLFSCGT 561 (1071)
Q Consensus 488 ~~~~~~~--~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~-~~~i~~~~~s~---~~~~l~~~~~ 561 (1071)
....+++ ...+.|++++.+|.. +++++|+..|.+.+||++-...+..+... ..+++.+...| .....++++.
T Consensus 1184 ~~~w~lk~~~~hG~vTSi~idp~~--~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~ 1261 (1431)
T KOG1240|consen 1184 HDAWRLKNQLRHGLVTSIVIDPWC--NWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGS 1261 (1431)
T ss_pred hhHHhhhcCccccceeEEEecCCc--eEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecc
Confidence 6655544 346889999999876 79999999999999999987777655432 34677666655 3456666654
Q ss_pred CCCCCCeEEEEeCCCCceeEEeeccccc------------------ceeEEEEeCCCCEEEEEeCCCcEEEEeCCCC
Q 001477 562 SKEGESHLVEWNESEGAIKRTYSGFRKR------------------SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM 620 (1071)
Q Consensus 562 ~~d~~~~i~iwd~~~~~~~~~~~~~~~~------------------~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 620 (1071)
. +.+.|.+|++.+|....++....+. ....+++...+..+++|+.|..|+.||....
T Consensus 1262 ~--~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1262 S--SNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred c--CCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCc
Confidence 2 4667999999998766665443110 1122344445678899999999999998653
No 214
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.61 E-value=2.9e-12 Score=127.48 Aligned_cols=281 Identities=12% Similarity=0.161 Sum_probs=197.3
Q ss_pred CCeEEEEeecCCCeEEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeEEEECCCCCEEEEE
Q 001477 347 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA 426 (1071)
Q Consensus 347 ~~V~~~~fsp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~la~~ 426 (1071)
..+..+.|..|.. +|..|+.|| -++|+...-..... .......|.-+-||. .++|..
T Consensus 6 ~ti~~~~~Nqd~~-~lsvGs~~G-yk~~~~~~~~k~~~-------------------~~~~~~~IvEmLFSS--SLvaiV 62 (391)
T KOG2110|consen 6 PTINFIGFNQDST-LLSVGSKDG-YKIFSCSPFEKCFS-------------------KDTEGVSIVEMLFSS--SLVAIV 62 (391)
T ss_pred cceeeeeecccee-EEEccCCCc-eeEEecCchHHhhc-------------------ccCCCeEEEEeeccc--ceeEEE
Confidence 3677778999985 899999887 46666654332110 111233455566654 466666
Q ss_pred eCC--CeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccCCceeEEecCC-CCCeEEE
Q 001477 427 FSK--HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGH-EAPVYSV 503 (1071)
Q Consensus 427 ~~d--g~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h-~~~v~~i 503 (1071)
+.+ ..+++++.+.+..+.. + ....+|.++.++.+ .|+.+-.+. |+|+|+++.+.++++... ..+---+
T Consensus 63 ~~~qpr~Lkv~~~Kk~~~ICe---~-~fpt~IL~VrmNr~----RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~ 133 (391)
T KOG2110|consen 63 SIKQPRKLKVVHFKKKTTICE---I-FFPTSILAVRMNRK----RLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLC 133 (391)
T ss_pred ecCCCceEEEEEcccCceEEE---E-ecCCceEEEEEccc----eEEEEEccc-EEEEecccceeehhhhccCCCccceE
Confidence 554 4589999888766552 2 23557999999754 456665444 999999999999988654 2222233
Q ss_pred EecccCCccEEEEEe--cCCeEEEEEcCCCceeEEecCCCCcEEEEEEccCCCEEEEeccCCCCCCeEEEEeCCCCceeE
Q 001477 504 CPHHKESIQFIFSTA--IDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKR 581 (1071)
Q Consensus 504 ~~~~~~~~~~l~s~~--~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~ 581 (1071)
+++++..+.+++.-+ ..|.|.+||..+.+....+..|.+.+.+++|+++|.+|++++. +.-.|+++.+.+|+.+.
T Consensus 134 AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASe---KGTVIRVf~v~~G~kl~ 210 (391)
T KOG2110|consen 134 ALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASE---KGTVIRVFSVPEGQKLY 210 (391)
T ss_pred eeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEecc---CceEEEEEEcCCccEee
Confidence 455555556777644 4688999999999999999999999999999999999999985 45568999999999998
Q ss_pred Eeeccc-ccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCCcee-------------------------------------
Q 001477 582 TYSGFR-KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNML------------------------------------- 623 (1071)
Q Consensus 582 ~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~------------------------------------- 623 (1071)
.|+... -..|.+++|+|++++|.+.|..++|++|.++....-
T Consensus 211 eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~F 290 (391)
T KOG2110|consen 211 EFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKF 290 (391)
T ss_pred eeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccce
Confidence 887433 225889999999999999999999999988642200
Q ss_pred EEEecCCCCCCcceEEEc--CCCCEEEEEeCCCcEEEEEcCC
Q 001477 624 TTVDADGGLPASPRLRFN--KEGSLLAVTTSDNGIKILANSD 663 (1071)
Q Consensus 624 ~~~~~~~~~~~v~~~~~s--~~~~~l~~~~~dg~v~iw~~~~ 663 (1071)
........ ..-..+.+. +...++.+++.||.++.|.+..
T Consensus 291 At~~l~~s-~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l~~ 331 (391)
T KOG2110|consen 291 ATAKLPES-GRKNICSLSSIQKIPRVLVASYDGHLYSYRLPP 331 (391)
T ss_pred eEEEccCC-CccceEEeeccCCCCEEEEEEcCCeEEEEEcCC
Confidence 00001100 001223344 3677899999999999998754
No 215
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.61 E-value=3.6e-14 Score=160.17 Aligned_cols=234 Identities=13% Similarity=0.113 Sum_probs=150.9
Q ss_pred ccccCCccceeeEEeecCCCCeEEEEeecCCCeEEEEEcC--CCeEEEEecCCCcccccccceeecccccccchhhhhcc
Q 001477 328 NVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTN--VGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLN 405 (1071)
Q Consensus 328 ~~~~~d~~~~~~~~~~~h~~~V~~~~fsp~g~~lla~gs~--dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 405 (1071)
.++.+|...........|...+.+++|||||++++.++.. +..|.+||+.+++..... .+.
T Consensus 185 ~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~-----------------~~~ 247 (429)
T PRK01742 185 EVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVA-----------------SFR 247 (429)
T ss_pred EEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEe-----------------cCC
Confidence 3444444333333344577889999999999865444322 247999999887532100 022
Q ss_pred cCCCCeeEEEECCCCCEEEEEe-CCCeEEEE--EecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEE
Q 001477 406 DAAISVNRCVWGPDGLMLGVAF-SKHIVHLY--TYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 482 (1071)
Q Consensus 406 ~h~~~v~~~~~spd~~~la~~~-~dg~i~iw--d~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iw 482 (1071)
+| ...++|||||+.|+.++ .+|.+.|| |+.++.. . .+..+...+.+..|+|||+. +++++..++...||
T Consensus 248 g~---~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~---~lt~~~~~~~~~~wSpDG~~-i~f~s~~~g~~~I~ 319 (429)
T PRK01742 248 GH---NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTP-S---QLTSGAGNNTEPSWSPDGQS-ILFTSDRSGSPQVY 319 (429)
T ss_pred Cc---cCceeECCCCCEEEEEEecCCcEEEEEEECCCCCe-E---eeccCCCCcCCEEECCCCCE-EEEEECCCCCceEE
Confidence 33 34689999999998875 67876666 5555432 2 45567777889999999994 33344567888888
Q ss_pred EccCC-ceeEEecCCCCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCceeEEecCCCCcEEEEEEccCCCEEEEecc
Q 001477 483 DVVAG-RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGT 561 (1071)
Q Consensus 483 d~~~~-~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 561 (1071)
++... .....+ .+.. ....|+|++ +.++..+.++ +.+||+.++........ .....+.|+|||+++++++.
T Consensus 320 ~~~~~~~~~~~l-~~~~--~~~~~SpDG--~~ia~~~~~~-i~~~Dl~~g~~~~lt~~--~~~~~~~~sPdG~~i~~~s~ 391 (429)
T PRK01742 320 RMSASGGGASLV-GGRG--YSAQISADG--KTLVMINGDN-VVKQDLTSGSTEVLSST--FLDESPSISPNGIMIIYSST 391 (429)
T ss_pred EEECCCCCeEEe-cCCC--CCccCCCCC--CEEEEEcCCC-EEEEECCCCCeEEecCC--CCCCCceECCCCCEEEEEEc
Confidence 76532 222333 3433 456787754 7887777765 45599987765432222 13356789999999998875
Q ss_pred CCCCCCeEEEEeC--CCCceeEEeecccccceeEEEEeCC
Q 001477 562 SKEGESHLVEWNE--SEGAIKRTYSGFRKRSLGVVQFDTT 599 (1071)
Q Consensus 562 ~~d~~~~i~iwd~--~~~~~~~~~~~~~~~~v~~~~~~~~ 599 (1071)
++...+|.+ .+|...+.+..+.. .+...+|+|-
T Consensus 392 ----~g~~~~l~~~~~~G~~~~~l~~~~g-~~~~p~wsp~ 426 (429)
T PRK01742 392 ----QGLGKVLQLVSADGRFKARLPGSDG-QVKFPAWSPY 426 (429)
T ss_pred ----CCCceEEEEEECCCCceEEccCCCC-CCCCcccCCC
Confidence 333445543 35777888877665 6778889874
No 216
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=2.1e-14 Score=147.04 Aligned_cols=264 Identities=14% Similarity=0.156 Sum_probs=198.6
Q ss_pred cccCCCCeeEEEECCCCCEEEEEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEE
Q 001477 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1071)
Q Consensus 404 ~~~h~~~v~~~~~spd~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd 483 (1071)
|.+|.+.|+.+.|+..|..|++|+.|..|.+||+..+..... ...+|...|....|-|.....-+++++.||.+++=.
T Consensus 138 L~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~--f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~ 215 (559)
T KOG1334|consen 138 LNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLS--FESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSE 215 (559)
T ss_pred ccCCCCccceeeecccCceeeccCccceEEeehhhccCcccc--cccccccchhhhhccCCCCCcCceeccccCceeeee
Confidence 778999999999999999999999999999999998775442 234798889888898865444799999999999876
Q ss_pred ccC-Cce--eEEecCCCCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCceeEEe---cCCCC---cEEEEEEccCCC
Q 001477 484 VVA-GRK--QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY---DAPGN---WCTMMAYSADGT 554 (1071)
Q Consensus 484 ~~~-~~~--~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~---~~~~~---~i~~~~~s~~~~ 554 (1071)
+.. +.+ ...+..|.++|..++.-|... ..|.+++.|+.+.-.|++.......+ ..+.. ....++..|...
T Consensus 216 i~~t~~~e~t~rl~~h~g~vhklav~p~sp-~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt 294 (559)
T KOG1334|consen 216 ILETGYVENTKRLAPHEGPVHKLAVEPDSP-KPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNT 294 (559)
T ss_pred eccccceecceecccccCccceeeecCCCC-CcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCc
Confidence 653 333 235567999999999988654 78999999999999999876554322 22222 567888999777
Q ss_pred -EEEEeccCCCCCCeEEEEeCCCCc------eeEEee-----cccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCCc-
Q 001477 555 -RLFSCGTSKEGESHLVEWNESEGA------IKRTYS-----GFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN- 621 (1071)
Q Consensus 555 -~l~~~~~~~d~~~~i~iwd~~~~~------~~~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~- 621 (1071)
.+++++. +..+++||.+.-. .+..+- ....-.|++++|+.++.-+++.-.|-.|+++....+.
T Consensus 295 ~~faVgG~----dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G 370 (559)
T KOG1334|consen 295 NEFAVGGS----DQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDG 370 (559)
T ss_pred cccccCCh----hhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccC
Confidence 5556654 6778999876422 122222 1222268999999888888888888899999654321
Q ss_pred -----------eeEE-EecCCCCCCcceEEE-cCCCCEEEEEeCCCcEEEEEcCChhhhhhhhcCCc
Q 001477 622 -----------MLTT-VDADGGLPASPRLRF-NKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRA 675 (1071)
Q Consensus 622 -----------~~~~-~~~~~~~~~v~~~~~-s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~ 675 (1071)
.+.. +++|.....|..+.| -|...++++|++-|.|.||+-.++ ++++.+.+..
T Consensus 371 ~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~-eii~~MegDr 436 (559)
T KOG1334|consen 371 SEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTG-EIIRFMEGDR 436 (559)
T ss_pred CCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchh-HHHHHhhccc
Confidence 2222 567766667888876 478899999999999999999888 7777766543
No 217
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.61 E-value=7.4e-14 Score=135.75 Aligned_cols=235 Identities=17% Similarity=0.182 Sum_probs=180.6
Q ss_pred CCCCeeEEEECCCCCEEEEEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccC
Q 001477 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA 486 (1071)
Q Consensus 407 h~~~v~~~~~spd~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~ 486 (1071)
-..+|+|.+|++|+..+|++-.+..|.||...+.+......++..|...|+.++|+|..+ .|++|+.|+.-++|....
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~sn--rIvtcs~drnayVw~~~~ 86 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSN--RIVTCSHDRNAYVWTQPS 86 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCC--ceeEccCCCCccccccCC
Confidence 346899999999999999999999999999999887777779999999999999999998 699999999999999844
Q ss_pred -Cc--eeEEecCCCCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCceeE----EecCCCCcEEEEEEccCCCEEEEe
Q 001477 487 -GR--KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV----DYDAPGNWCTMMAYSADGTRLFSC 559 (1071)
Q Consensus 487 -~~--~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~----~~~~~~~~i~~~~~s~~~~~l~~~ 559 (1071)
++ +.-.+..+....+++.|+|.+ +.+++|+.-..|.||-++..+.-. .-......|.++.|+|++-.++++
T Consensus 87 ~~~WkptlvLlRiNrAAt~V~WsP~e--nkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaG 164 (361)
T KOG1523|consen 87 GGTWKPTLVLLRINRAATCVKWSPKE--NKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAG 164 (361)
T ss_pred CCeeccceeEEEeccceeeEeecCcC--ceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccc
Confidence 33 334555689999999999977 899999999999999877544321 223346689999999999999988
Q ss_pred ccCCCCCCeEEEEeCC-----C-------------CceeEEeecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCCc
Q 001477 560 GTSKEGESHLVEWNES-----E-------------GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN 621 (1071)
Q Consensus 560 ~~~~d~~~~i~iwd~~-----~-------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 621 (1071)
+. |+..+++..- + |+++..+. ...+.+..+.|+|+|+.|+-.+.|+++.+=|.....
T Consensus 165 s~----D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~-~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 165 ST----DGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEAS-SSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred cc----CcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhc-cCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence 75 6667777531 1 22333343 233479999999999999999999999999987764
Q ss_pred -eeEEEecCCCCCCcceEEEcCCCCEEEEEeCC
Q 001477 622 -MLTTVDADGGLPASPRLRFNKEGSLLAVTTSD 653 (1071)
Q Consensus 622 -~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 653 (1071)
.+..+... . -+..++.|-.+...++ ++.|
T Consensus 240 ~~v~~~~~~-~-lP~ls~~~ise~~vv~-ag~~ 269 (361)
T KOG1523|consen 240 ERVQSVATA-Q-LPLLSVSWISENSVVA-AGYD 269 (361)
T ss_pred hhccchhhc-c-CCceeeEeecCCceee-cCCC
Confidence 23333211 1 3556677765554433 3344
No 218
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.61 E-value=2.1e-09 Score=129.82 Aligned_cols=535 Identities=10% Similarity=0.088 Sum_probs=299.3
Q ss_pred CCCCeeEEEECCCCCEEEEEeCCCeEEEE----EecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEE
Q 001477 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLY----TYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 482 (1071)
Q Consensus 407 h~~~v~~~~~spd~~~la~~~~dg~i~iw----d~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iw 482 (1071)
..+.|.++.|-++...++.+..+|.|.+. +..+.. +. ....-...|.+++||||++ +|+..+.++++.+.
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E---~VG~vd~GI~a~~WSPD~E--lla~vT~~~~l~~m 147 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE-IE---IVGSVDSGILAASWSPDEE--LLALVTGEGNLLLM 147 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce-eE---EEEEEcCcEEEEEECCCcC--EEEEEeCCCEEEEE
Confidence 45789999999999999999999999999 444322 11 2233567899999999999 67777777777765
Q ss_pred EccCCc------------------------eeEEecCCC------------------CCe----EEEEecccCCccEEEE
Q 001477 483 DVVAGR------------------------KQYTFEGHE------------------APV----YSVCPHHKESIQFIFS 516 (1071)
Q Consensus 483 d~~~~~------------------------~~~~~~~h~------------------~~v----~~i~~~~~~~~~~l~s 516 (1071)
+ ++.. ....|+|-. +.+ ..+.++..+||.++++
T Consensus 148 t-~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAV 226 (928)
T PF04762_consen 148 T-RDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAV 226 (928)
T ss_pred e-ccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEE
Confidence 4 2111 111121110 001 2233444578899998
Q ss_pred Eec---C---CeEEEEEcCCCceeEEecCCCCcEEEEEEccCCCEEEEeccCCCCCCeEEEEeCCCCceeEEeecc---c
Q 001477 517 TAI---D---GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGF---R 587 (1071)
Q Consensus 517 ~~~---d---~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~---~ 587 (1071)
.+. . ..+|||+-+ +.....-..-.+--.+++|.|.|+++++... ..+...|.+|. ++|-.-..|... .
T Consensus 227 ss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~-~~~~~~VvFfE-rNGLrhgeF~l~~~~~ 303 (928)
T PF04762_consen 227 SSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQR-LPDRHDVVFFE-RNGLRHGEFTLRFDPE 303 (928)
T ss_pred EEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEE-cCCCcEEEEEe-cCCcEeeeEecCCCCC
Confidence 875 3 469999865 3333333333334457899999999998765 23345566676 445554444432 3
Q ss_pred ccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCCce--eEEEecCCCCCCcceEEEcC-CCCEEEEEeCCCcEEEEEcCCh
Q 001477 588 KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM--LTTVDADGGLPASPRLRFNK-EGSLLAVTTSDNGIKILANSDG 664 (1071)
Q Consensus 588 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~v~iw~~~~~ 664 (1071)
...|..+.|++++..|+..-.|. |.+|...+..- .+.+..... ..+..+.|+| +...|...+.+|.+..++..-.
T Consensus 304 ~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~-~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~ 381 (928)
T PF04762_consen 304 EEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSS-ESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWD 381 (928)
T ss_pred CceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCC-CCCCceEECCCCCCEEEEEecCCcEEEEEEEEE
Confidence 33789999999999999977655 99999988653 333333222 2345699999 4556888887788877664321
Q ss_pred hhhhhhhcCCccccccCCCCCCCCCCccccccCCCCccccccCCCCCCCCCCCCcccccccCCCCccccccccccccccc
Q 001477 665 VRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDV 744 (1071)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 744 (1071)
. ..+... ...+...+++...
T Consensus 382 v-----~~s~~~-------------------------------------------------------~~~D~g~vaVIDG 401 (928)
T PF04762_consen 382 V-----SRSPGS-------------------------------------------------------SPNDNGTVAVIDG 401 (928)
T ss_pred E-----EecCCC-------------------------------------------------------CccCceEEEEEeC
Confidence 0 000000 0001111222333
Q ss_pred CccceeccCCCCCcccc--eeeecCCCcCCCceEEEEEecccchhhhccccceeEEEecccccCCCCCccceeecceecc
Q 001477 745 DKIKSWRIPDISDPSQI--KALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQ 822 (1071)
Q Consensus 745 ~~v~~w~~~~~~~~~~~--~~~~~~~~~~~~~v~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~ 822 (1071)
.++.+-++.....+... ..+.+ ...|.+++|++++..+++...||.+.+|.+.............. ..
T Consensus 402 ~~lllTpf~~a~VPPPMs~~~l~~-----~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~-----~~ 471 (928)
T PF04762_consen 402 NKLLLTPFRRAVVPPPMSSYELEL-----PSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLL-----SS 471 (928)
T ss_pred CeEEEecccccCCCchHhceEEcC-----CCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchh-----hh
Confidence 55666666554433332 33332 36799999999998899999999999998665322110000000 00
Q ss_pred CCCCCccccccCCCCCCCCCeEEEEEecCCcEEEEEe-C---CeEEEEECCCCe---EEEEEeCCCCCeEEEEEcCCCCC
Q 001477 823 PPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-G---GKVSLFNMMTFK---VMTMFMSPPPAATFLAFHPQDNN 895 (1071)
Q Consensus 823 ~~~~~~~~~~~~~~~h~~~~v~~v~~s~d~~~la~~~-d---g~i~vwd~~~~~---~~~~~~~~~~~i~~l~~sp~~~~ 895 (1071)
............. . ...+..++|..+...++... + ..+.+++....+ .......-.+.+..+...+ ...
T Consensus 472 ~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 547 (928)
T PF04762_consen 472 ISLDSMDISDSEL--P-LGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSP-DSG 547 (928)
T ss_pred ccccccccccccc--c-cccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeCC-CCc
Confidence 0000000000000 1 45678899988888777766 3 468888874332 2233333344555666666 444
Q ss_pred EEEEEeCCCeEEEEEccCCeE-EEEecCcCCCeeEEEEcCCCC---EEEEEeCCCcEEEEECCCCceeeeeeecCCCCCC
Q 001477 896 IIAIGMEDSSVQIYNVRVDEV-KTKLKGHQNRITGLAFSPTLN---ALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQ 971 (1071)
Q Consensus 896 ~la~g~~dg~v~vwd~~~~~~-~~~l~~h~~~v~~l~~s~d~~---~l~s~~~d~~v~vWd~~~~~~~~~~~~~~~~~~~ 971 (1071)
.++.-..+|.+...+...... +..+..--..+ .+....+.. .++.-+..|.+++ ++..+.
T Consensus 548 ~~~~q~~~G~v~~~~~~~~~~~~~~fp~~c~~~-~~~~~~~~~~~~~~~GLs~~~~Ly~----n~~~la----------- 611 (928)
T PF04762_consen 548 SLYIQTNDGKVFQLSSDGELSQIVKFPQPCPWM-EVCQINGSEDKRVLFGLSSNGRLYA----NSRLLA----------- 611 (928)
T ss_pred EEEEEECCCEEEEeecCCCccccccCCCCCcEE-EEEEECCccceeEEEEECCCCEEEE----CCEEEe-----------
Confidence 566677899998776554422 22333222222 222222322 4444444454443 111111
Q ss_pred CCCCCceEEEEccCCCEEE-EEECCeEEEEeCC--CCceeecCCCCC--CCCCeeEEEEecCCcEEEEEeCCCeEEEEEc
Q 001477 972 SPLVGETKVQFHNDQTHLL-VVHESQISVYDSK--LECSRSWSPKDA--LPAPISSAIYSCDGLLVYAGFCDGAIGVFDA 1046 (1071)
Q Consensus 972 ~~~~~v~~~~~s~dg~~l~-~~~d~~i~vwd~~--~~~~~~~~~~~~--h~~~v~~~~~s~dg~~l~t~~~Dg~i~vwd~ 1046 (1071)
..+++.++. +.+|+ +.....+++.++. ............ +...+.. -..|..|+++-....=.|..+
T Consensus 612 ---~~~tSF~v~--~~~Ll~TT~~h~l~fv~L~~~~~~l~~~~~~~~~~~de~~R~---VERGsriVt~vp~~~~vVLQm 683 (928)
T PF04762_consen 612 ---SNCTSFAVT--DSFLLFTTTQHTLKFVHLNSSVEDLEIPPDSPENSYDERCRR---VERGSRIVTAVPSDTSVVLQM 683 (928)
T ss_pred ---cCCceEEEE--cCEEEEEecCceEEEEECcCchhhcccccCcccccccccccc---CccCCEEEEEeCCCceEEEEc
Confidence 345666663 44444 4566678888875 111111111000 1122222 246777777665545455577
Q ss_pred CCCeE
Q 001477 1047 ETLRF 1051 (1071)
Q Consensus 1047 ~~~~~ 1051 (1071)
+.|.+
T Consensus 684 PRGNL 688 (928)
T PF04762_consen 684 PRGNL 688 (928)
T ss_pred CCCch
Confidence 66654
No 219
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=7.6e-13 Score=130.67 Aligned_cols=284 Identities=15% Similarity=0.192 Sum_probs=187.4
Q ss_pred CCCeEEEEeecCCCeEEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeEEEECCC-CCEEE
Q 001477 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD-GLMLG 424 (1071)
Q Consensus 346 ~~~V~~~~fsp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd-~~~la 424 (1071)
+-.+..++|++.-- -+|++..|-.|++||-.. ..... +-......|+|++|-|. ++.|+
T Consensus 98 ~~dlr~~aWhqH~~-~fava~nddvVriy~kss-t~pt~------------------Lks~sQrnvtclawRPlsasela 157 (445)
T KOG2139|consen 98 EIDLRGVAWHQHII-AFAVATNDDVVRIYDKSS-TCPTK------------------LKSVSQRNVTCLAWRPLSASELA 157 (445)
T ss_pred hcceeeEeechhhh-hhhhhccCcEEEEeccCC-CCCce------------------ecchhhcceeEEEeccCCcceee
Confidence 44788899999654 467888999999999765 22211 01123457999999995 55777
Q ss_pred EEeCCCeEEEEEecCCCccc-----------eeeEeecccCCEEEEEEecCCCceEEEEEeC-CCcEEEEEccCCceeEE
Q 001477 425 VAFSKHIVHLYTYNPTGELR-----------QHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD-DKMIKVWDVVAGRKQYT 492 (1071)
Q Consensus 425 ~~~~dg~i~iwd~~~~~~~~-----------~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~-d~~i~iwd~~~~~~~~~ 492 (1071)
.|+..| |.+|......... ......+| .+|++|+|.+||. .+++++. |..|.|||+.+|..+.-
T Consensus 158 vgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt--~l~tAS~gsssi~iWdpdtg~~~pL 233 (445)
T KOG2139|consen 158 VGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGT--ILVTASFGSSSIMIWDPDTGQKIPL 233 (445)
T ss_pred eeecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCC--EEeecccCcceEEEEcCCCCCcccc
Confidence 776665 9999875321111 11122345 5899999999999 6777764 56899999999987765
Q ss_pred ecCCCCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCceeEEecCCCCcEEEEEEccCCCEEEEeccCCCCCCeEEEE
Q 001477 493 FEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEW 572 (1071)
Q Consensus 493 ~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iw 572 (1071)
....-+.+.-+.|+|++ ++|+++..|+..++|.....-.........+.|...+|+|+|++|+.... +.. .+|
T Consensus 234 ~~~glgg~slLkwSPdg--d~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s---gsp--~ly 306 (445)
T KOG2139|consen 234 IPKGLGGFSLLKWSPDG--DVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS---GSP--RLY 306 (445)
T ss_pred cccCCCceeeEEEcCCC--CEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc---CCc--eEE
Confidence 54556778899999866 89999999999999955443333333334458999999999999876553 222 233
Q ss_pred eCC----CCc-----------eeEEe------ec--ccccceeEEEEeCCCCEEEEEeCC--------CcEEEEeCCCCc
Q 001477 573 NES----EGA-----------IKRTY------SG--FRKRSLGVVQFDTTRNRFLAAGDE--------FQIKFWDMDNMN 621 (1071)
Q Consensus 573 d~~----~~~-----------~~~~~------~~--~~~~~v~~~~~~~~~~~l~~~~~d--------g~i~iwd~~~~~ 621 (1071)
.+. .+. ++..+ .+ .-.+...+++|.|.|.++++.-.. +.|.+||....-
T Consensus 307 sl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp 386 (445)
T KOG2139|consen 307 SLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSP 386 (445)
T ss_pred EEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccC
Confidence 321 100 00001 01 012367889999999999985432 346778877654
Q ss_pred eeEEEe--cCCCCCCcceEEEcC---CCCEEEEEeCCCcEEEEEc
Q 001477 622 MLTTVD--ADGGLPASPRLRFNK---EGSLLAVTTSDNGIKILAN 661 (1071)
Q Consensus 622 ~~~~~~--~~~~~~~v~~~~~s~---~~~~l~~~~~dg~v~iw~~ 661 (1071)
.+.... ...+ ..-..+.|+| ++.+|.++-..|.+.-|++
T Consensus 387 ~vels~cg~i~g-e~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl 430 (445)
T KOG2139|consen 387 PVELSYCGMIGG-EYPAYISFGPLKNEGRLLSIAWSTGRIQRYPL 430 (445)
T ss_pred ceEEEecccccC-CCCceEEeeecccCCcEEEEEeccCceEeeee
Confidence 443331 1111 1235567766 6778888888888887765
No 220
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=2.8e-12 Score=137.15 Aligned_cols=565 Identities=12% Similarity=0.094 Sum_probs=332.3
Q ss_pred CCCeEEEEeecCCCeEEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeEEEECCCCCEEEE
Q 001477 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1071)
Q Consensus 346 ~~~V~~~~fsp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~la~ 425 (1071)
.....|+.|+.... ++|+|+.||.+++-.+.+...-.. .--+...+.......+.||.+.|.-+.|+.+.+.|-+
T Consensus 14 nvkL~c~~WNke~g-yIAcgG~dGlLKVlKl~t~t~d~~----~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTt 88 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESG-YIACGGADGLLKVLKLGTDTTDLN----KSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTT 88 (1189)
T ss_pred CceEEEEEEcccCC-eEEeccccceeEEEEccccCCccc----ccccccccccchhhhhccCcceEEEEEeccccccccc
Confidence 45788999999886 799999999999998876432211 0012223333445568999999999999999999999
Q ss_pred EeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccCCcee-EEecCCCCCeEEEE
Q 001477 426 AFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ-YTFEGHEAPVYSVC 504 (1071)
Q Consensus 426 ~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~h~~~v~~i~ 504 (1071)
...+|.|.+|-+-.|.-.... .-......|.+++|+.||. .+.....||.|.+=.+...+.- +.+++ .....+.
T Consensus 89 SDt~GlIiVWmlykgsW~EEM-iNnRnKSvV~SmsWn~dG~--kIcIvYeDGavIVGsvdGNRIwgKeLkg--~~l~hv~ 163 (1189)
T KOG2041|consen 89 SDTSGLIIVWMLYKGSWCEEM-INNRNKSVVVSMSWNLDGT--KICIVYEDGAVIVGSVDGNRIWGKELKG--QLLAHVL 163 (1189)
T ss_pred cCCCceEEEEeeecccHHHHH-hhCcCccEEEEEEEcCCCc--EEEEEEccCCEEEEeeccceecchhcch--hecccee
Confidence 999999999999887644321 1123456799999999999 6777888888877665433221 12222 1233567
Q ss_pred ecccCCccEEEEEecCCeEEEEEcCCCc-------eeE----EecCCCCcEEEEEEc--------cCCCEEEEeccCCCC
Q 001477 505 PHHKESIQFIFSTAIDGKIKAWLYDYLG-------SRV----DYDAPGNWCTMMAYS--------ADGTRLFSCGTSKEG 565 (1071)
Q Consensus 505 ~~~~~~~~~l~s~~~d~~i~vwd~~~~~-------~~~----~~~~~~~~i~~~~~s--------~~~~~l~~~~~~~d~ 565 (1071)
|+++. ..++.+-.+|.+++||....- +.. .+......|..+.|. ||...++.+..
T Consensus 164 ws~D~--~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~---- 237 (1189)
T KOG2041|consen 164 WSEDL--EQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYA---- 237 (1189)
T ss_pred ecccH--HHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEc----
Confidence 77754 667777788999999865321 111 112222345555552 46677877764
Q ss_pred CCeEEEEeCCCCceeEEeecccccceeEEEEeCCCCEEEEEeCCC---------cEEEEeCCCCceeEEEecCCCCCCcc
Q 001477 566 ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEF---------QIKFWDMDNMNMLTTVDADGGLPASP 636 (1071)
Q Consensus 566 ~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---------~i~iwd~~~~~~~~~~~~~~~~~~v~ 636 (1071)
+|.+.+..-.+......+... -.+....|+++|..++.+|.+. .|.++.. -|+.+.+++.++. .|+
T Consensus 238 nGr~QiMR~eND~~Pvv~dtg--m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~gtlkvpg~--~It 312 (1189)
T KOG2041|consen 238 NGRMQIMRSENDPEPVVVDTG--MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-YGHIVGTLKVPGS--CIT 312 (1189)
T ss_pred CceehhhhhcCCCCCeEEecc--cEeecceecCCCcEEEEccCcccccCccccceEEEecc-chhheEEEecCCc--eee
Confidence 555655543332222222221 2577789999999999987432 4555543 4677888877665 689
Q ss_pred eEEEcCCCCEEEEEeCCCcEEEEEcCChhhhhhhhcCCccccccCCCCCCCCCCccccccCCCCccccccCCCCCCCCCC
Q 001477 637 RLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRG 716 (1071)
Q Consensus 637 ~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 716 (1071)
+++|-..|-.++.+- |+.|.+=+++...+ +......+.
T Consensus 313 ~lsWEg~gLriA~Av-dsfiyfanIRP~yk----Wgy~e~TvV------------------------------------- 350 (1189)
T KOG2041|consen 313 GLSWEGTGLRIAIAV-DSFIYFANIRPEYK----WGYIEETVV------------------------------------- 350 (1189)
T ss_pred eeEEcCCceEEEEEe-cceEEEEeecccce----EEEeeeEEE-------------------------------------
Confidence 999988887777664 66887766654310 000000000
Q ss_pred CCcccccccCCCCcccccccccccccc---cCccceeccCCCCCcccceeeecCCCcCCCceEEEEEecccchhhhcccc
Q 001477 717 PPAVSISSLGTIDGSRLVDVKPRVAED---VDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASN 793 (1071)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~~~~~d 793 (1071)
++-... .-.|.+||..+....... -....+++|..+--.|+.-..+
T Consensus 351 ---------------------y~y~~~e~p~y~i~Fwdtk~nek~vK~----------V~~~~~~a~~~ehCvL~~~~d~ 399 (1189)
T KOG2041|consen 351 ---------------------YVYQKEELPQYGIMFWDTKTNEKTVKT----------VTHFENMAFYREHCVLINRQDD 399 (1189)
T ss_pred ---------------------EEEccCCCcceEEEEEecccChhhhhh----------hcceeehheecccEEEEecccc
Confidence 000000 134678887754332111 1122345555554444554555
Q ss_pred ceeEEEecccccCCCCCccceeecceeccCCCCCccccccCCCCCCCCCeEEEEEecCCcEEEEEeCCeEEEEECCCCeE
Q 001477 794 AVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKV 873 (1071)
Q Consensus 794 g~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~v~~s~d~~~la~~~dg~i~vwd~~~~~~ 873 (1071)
|.+.-++.-. ..+. .....+-+. -|..+-. . -..|.-.-..-++..++.++...+.+|.....+.
T Consensus 400 ~~i~e~s~le----~~~~---~~~l~LCNS-IGT~lD~------k-ytdirP~Fv~vn~~~vviAS~e~~~iWhy~~pK~ 464 (1189)
T KOG2041|consen 400 GVIPEYSTLE----NRSR---VYFLQLCNS-IGTSLDY------K-YTDIRPKFVCVNGICVVIASEERYFIWHYVLPKF 464 (1189)
T ss_pred CCCcchhhhh----cccc---eEEEeeecc-cCCcCCC------C-cceeeeeEEEecceEEEEeccccEEEEEEeccch
Confidence 5554331100 0000 000001110 0111100 0 1122222333477888888988899998765444
Q ss_pred EEEEeC---CCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEccCCeEEEEecCcCCCeeEEEEcCCCCEEEEEeCCCcEEE
Q 001477 874 MTMFMS---PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCM 950 (1071)
Q Consensus 874 ~~~~~~---~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~~~v~~l~~s~d~~~l~s~~~d~~v~v 950 (1071)
...+.+ +...- |+-| ..-+|+.|+.+. .. .+++.|..++|-+++.| .++|..+-..|.|.-
T Consensus 465 ~s~l~~~k~rkegr----~h~D---dtp~ga~d~~l~---ys----~kt~~G~~DpICAl~~s--dk~l~vareSG~I~r 528 (1189)
T KOG2041|consen 465 NSVLAGVKIRKEGR----FHGD---DTPEGAQDRTLE---YS----TKTLLGSKDPICALCIS--DKFLMVARESGGIYR 528 (1189)
T ss_pred hhhhhhhhhccccc----ccCC---CCccchhhceee---cc----ceeeccCCCcceeeeec--ceEEEEEeccCceEE
Confidence 333322 21111 3321 223455666542 11 35678899999999886 678888999999999
Q ss_pred EECCCCceeeeeeecCCCCCCCCCCCceEEEEccCCCEEEEE-ECCeEEEEeC----CCCceeecCCCCCCCCCeeEEEE
Q 001477 951 WSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQISVYDS----KLECSRSWSPKDALPAPISSAIY 1025 (1071)
Q Consensus 951 Wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d~~i~vwd~----~~~~~~~~~~~~~h~~~v~~~~~ 1025 (1071)
+++.+.-...... ....+.+++..-+...+|+- --|.+.+.|+ ++..+..+...+ ...|+.+.|
T Consensus 529 ySl~nv~l~n~y~---------~n~~~y~~~lNCnstRlAiId~~gv~tf~dLd~d~~g~ql~~~~~~e--rrDVWd~~W 597 (1189)
T KOG2041|consen 529 YSLNNVVLTNSYP---------VNPSIYSIKLNCNSTRLAIIDLVGVVTFQDLDYDFDGDQLKLIYTSE--RRDVWDYEW 597 (1189)
T ss_pred EEecceeeeeccc---------cCchheeEeeccCcchhhhhhhhceeeeeecccccCcceeeeeehhh--hhhhhhhhh
Confidence 9998844322111 11457888888888888774 4667777666 455554333333 667899999
Q ss_pred ecCCcEEEEEeCCCeEEEEEc
Q 001477 1026 SCDGLLVYAGFCDGAIGVFDA 1046 (1071)
Q Consensus 1026 s~dg~~l~t~~~Dg~i~vwd~ 1046 (1071)
..|...|++--..-.++|++-
T Consensus 598 a~dNp~llAlmeKtrmyifrg 618 (1189)
T KOG2041|consen 598 AQDNPNLLALMEKTRMYIFRG 618 (1189)
T ss_pred ccCCchHHhhhhhceEEEecC
Confidence 888876665544445666654
No 221
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=4.4e-13 Score=132.36 Aligned_cols=260 Identities=13% Similarity=0.125 Sum_probs=163.4
Q ss_pred CCceEEEEEecccchhhhccccceeEEEecccccCCCCCccceeecceeccCCCCCccccccCCCCCCCCCeEEEEEecC
Q 001477 772 ASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKN 851 (1071)
Q Consensus 772 ~~~v~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~v~~s~d 851 (1071)
...|++++|-|.+..-++.+-.+.|.+|......-. ...++.-....+++ ++..+ ..+|+++.|.+|
T Consensus 140 QrnvtclawRPlsaselavgCr~gIciW~~s~tln~-------~r~~~~~s~~~~qv----l~~pg--h~pVtsmqwn~d 206 (445)
T KOG2139|consen 140 QRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNA-------NRNIRMMSTHHLQV----LQDPG--HNPVTSMQWNED 206 (445)
T ss_pred hcceeEEEeccCCcceeeeeecceeEEEEcCccccc-------ccccccccccchhh----eeCCC--CceeeEEEEcCC
Confidence 456899999998765555555556899976532110 00001000111111 22222 478999999999
Q ss_pred CcEEEEEe--CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcc-CCeEEEEecCcCCCee
Q 001477 852 DSYVMSAS--GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVR-VDEVKTKLKGHQNRIT 928 (1071)
Q Consensus 852 ~~~la~~~--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~-~~~~~~~l~~h~~~v~ 928 (1071)
|..+++++ +..|.|||.+++..+.......+.++-+.||| |+.+|..++-|+..++|... +..... ..--.+.|+
T Consensus 207 gt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSP-dgd~lfaAt~davfrlw~e~q~wt~er-w~lgsgrvq 284 (445)
T KOG2139|consen 207 GTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSP-DGDVLFAATCDAVFRLWQENQSWTKER-WILGSGRVQ 284 (445)
T ss_pred CCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcC-CCCEEEEecccceeeeehhcccceecc-eeccCCcee
Confidence 99999998 78899999999887666655667899999999 89999999999999999543 333322 222345899
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCcee--e-------e-ee------ecCCCCCCCCCCCceEEEEccCCCEEEEE
Q 001477 929 GLAFSPTLNALVSSGADAQLCMWSIDKWEKL--K-------S-RF------IQAPAGRQSPLVGETKVQFHNDQTHLLVV 992 (1071)
Q Consensus 929 ~l~~s~d~~~l~s~~~d~~v~vWd~~~~~~~--~-------~-~~------~~~~~~~~~~~~~v~~~~~s~dg~~l~~~ 992 (1071)
..+|+|+|++|.-+.. |.-++|.+...+.. . . .. .....+...-.+++.+++|.|.|.+||+.
T Consensus 285 tacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~ 363 (445)
T KOG2139|consen 285 TACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVI 363 (445)
T ss_pred eeeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEE
Confidence 9999999997664432 22344444321110 0 0 00 01111222224788999999999999995
Q ss_pred EC---------CeEEEEeC-CCCceeecCCCCCCCCCeeEEEEec---CCcEEEEEeCCCeEEEEEcC
Q 001477 993 HE---------SQISVYDS-KLECSRSWSPKDALPAPISSAIYSC---DGLLVYAGFCDGAIGVFDAE 1047 (1071)
Q Consensus 993 ~d---------~~i~vwd~-~~~~~~~~~~~~~h~~~v~~~~~s~---dg~~l~t~~~Dg~i~vwd~~ 1047 (1071)
.. ..|..||. +.-.+..............-++|+| +|.+|..+=+.|.+.-|++.
T Consensus 364 fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 364 FKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred EcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence 32 24567776 2222222211111133356677766 67788888888988888775
No 222
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.58 E-value=8.6e-13 Score=128.52 Aligned_cols=237 Identities=13% Similarity=0.156 Sum_probs=170.0
Q ss_pred eeEEEECCCCCEEEEEeCCCeEEEEEecCCCccceeeEeecccC--CEEEEEEecCCCceEEEEEeCC------CcEEEE
Q 001477 411 VNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVG--GVNDIAFAHPNKQLCIVTCGDD------KMIKVW 482 (1071)
Q Consensus 411 v~~~~~spd~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~--~v~~~~~s~d~~~~~l~s~~~d------~~i~iw 482 (1071)
..+++|+.|..-+++|..+| .+||+.+--+... ..+.+.+ .+..|-|- .+. +.+.||.+ ..|.||
T Consensus 8 ~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~---~r~~~~~G~~~veMLfR--~N~-laLVGGg~~pky~pNkviIW 80 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESA---SRQFIDGGFKIVEMLFR--SNY-LALVGGGSRPKYPPNKVIIW 80 (346)
T ss_pred eeEEEEccCCceEEEEecCc-eEEEecCchhhhh---hhccccCchhhhhHhhh--hce-EEEecCCCCCCCCCceEEEE
Confidence 45599999999999997776 8999987633221 1111222 22233332 232 23344433 489999
Q ss_pred EccCCceeEEecCCCCCeEEEEecccCCccEEEEEecCCeEEEEEcC-CCceeEEecCCC--CcEEEEEEccCCCEEEEe
Q 001477 483 DVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD-YLGSRVDYDAPG--NWCTMMAYSADGTRLFSC 559 (1071)
Q Consensus 483 d~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~-~~~~~~~~~~~~--~~i~~~~~s~~~~~l~~~ 559 (1071)
|-...+++.++. ...+|.++.+.++ .++ .-..+.|.||... +.+....+.... ....+++-..+...|+.-
T Consensus 81 DD~k~~~i~el~-f~~~I~~V~l~r~----riV-vvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafP 154 (346)
T KOG2111|consen 81 DDLKERCIIELS-FNSEIKAVKLRRD----RIV-VVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFP 154 (346)
T ss_pred ecccCcEEEEEE-eccceeeEEEcCC----eEE-EEecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcC
Confidence 977778887775 6789999998753 333 3357899999987 444444444333 234444433344455544
Q ss_pred ccCCCCCCeEEEEeCCCCce--eEEeecccccceeEEEEeCCCCEEEEEeCCCc-EEEEeCCCCceeEEEecCCCCCCcc
Q 001477 560 GTSKEGESHLVEWNESEGAI--KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQ-IKFWDMDNMNMLTTVDADGGLPASP 636 (1071)
Q Consensus 560 ~~~~d~~~~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~ 636 (1071)
+ -+.|+|.+-|+...+. ...+..|.. .|.+++.+.+|..++++|..|+ |||||..+|+++..+.-......|.
T Consensus 155 g---~k~GqvQi~dL~~~~~~~p~~I~AH~s-~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy 230 (346)
T KOG2111|consen 155 G---FKTGQVQIVDLASTKPNAPSIINAHDS-DIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIY 230 (346)
T ss_pred C---CccceEEEEEhhhcCcCCceEEEcccC-ceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEE
Confidence 4 3578899999986554 466788877 8999999999999999998887 7999999999999997666667899
Q ss_pred eEEEcCCCCEEEEEeCCCcEEEEEcCCh
Q 001477 637 RLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1071)
Q Consensus 637 ~~~~s~~~~~l~~~~~dg~v~iw~~~~~ 664 (1071)
+++|||+..+|+++|+.|++++|.+...
T Consensus 231 ~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 231 CIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred EEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 9999999999999999999999998764
No 223
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.56 E-value=1.2e-13 Score=143.23 Aligned_cols=117 Identities=26% Similarity=0.433 Sum_probs=105.2
Q ss_pred CCCeEEEEEecCCcEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEccCCeEEE
Q 001477 840 EESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKT 918 (1071)
Q Consensus 840 ~~~v~~v~~s~d~~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~ 918 (1071)
...|...+|||||++||+.+ ||.++|||..+.+++..++.--+...|++||| ||++|++|++|--|.||.+..++.+.
T Consensus 290 ~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSP-DGKyIvtGGEDDLVtVwSf~erRVVA 368 (636)
T KOG2394|consen 290 EGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSP-DGKYIVTGGEDDLVTVWSFEERRVVA 368 (636)
T ss_pred cccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcC-CccEEEecCCcceEEEEEeccceEEE
Confidence 55788899999999999999 99999999999888888877778899999999 99999999999999999999999999
Q ss_pred EecCcCCCeeEEEEcC-----------------------------------CC-------------CEEEEEeCCCcEEE
Q 001477 919 KLKGHQNRITGLAFSP-----------------------------------TL-------------NALVSSGADAQLCM 950 (1071)
Q Consensus 919 ~l~~h~~~v~~l~~s~-----------------------------------d~-------------~~l~s~~~d~~v~v 950 (1071)
.-.||.+-|..|+|.| ++ -++.|+|.|..+++
T Consensus 369 RGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcL 448 (636)
T KOG2394|consen 369 RGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCL 448 (636)
T ss_pred eccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEE
Confidence 9999999999999972 01 25778999999999
Q ss_pred EECCCCc
Q 001477 951 WSIDKWE 957 (1071)
Q Consensus 951 Wd~~~~~ 957 (1071)
||+....
T Consensus 449 WDlteD~ 455 (636)
T KOG2394|consen 449 WDLTEDV 455 (636)
T ss_pred Eecchhh
Confidence 9997643
No 224
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.56 E-value=1.2e-14 Score=158.45 Aligned_cols=300 Identities=17% Similarity=0.237 Sum_probs=200.0
Q ss_pred hHHHHHHHHHHHHHHhhCCCCCCCCCccccccccccCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCc
Q 001477 169 SRLRTLINQSLNWQHQLCKNPRPNPDIKTLFTDHSCNPTSNGARPPPPTNNPLVGPIPKAGQFPPIGAHGPFQPVVSPSP 248 (1071)
Q Consensus 169 ~rL~~ll~qa~~~q~~~~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~f~~~~~~~~ 248 (1071)
--|..|+.|+++.|+.+|..|.++++++|||.+|+|++.+ ... +. |-+ |.
T Consensus 1013 ~sLdSIVt~Ylr~QH~~CknPVtTcPPfSLf~pH~CPEpk-------~~~-~a----p~N-----------~t------- 1062 (1516)
T KOG1832|consen 1013 LSLDSIVTQYLRHQHRQCKNPVTTCPPFSLFHPHVCPEPK-------RLL-EA----PLN-----------MT------- 1062 (1516)
T ss_pred CcHHHHHHHHHHHHHHhhcCCcccCCChhhcCCccCCChH-------HHh-hc----chh-----------hh-------
Confidence 3599999999999999999999999999999999999922 111 00 000 00
Q ss_pred ccccccccCCCCCCCCCCccCCCCCCCCCCcccccccCCCCCCCCCcccccCCChhhHHhhcccCCcceeeccCCCCCCc
Q 001477 249 GAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKHPRTPTGMTGMDYQSADSDHLMKRIRTGQSDEVSFAGVAHTPN 328 (1071)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~~~~~ 328 (1071)
+ +...+.-.+. .+.+..+-.|.+.+..+.+.
T Consensus 1063 ----~----------------------------Rl~~rel~~~-y~gV~g~~~dr~~IFSRFr~---------------- 1093 (1516)
T KOG1832|consen 1063 ----G----------------------------RLGTRELQSF-YSGVHGNRRDRQFIFSRFRS---------------- 1093 (1516)
T ss_pred ----h----------------------------cccchhhcCc-ccccccCcccchhhHhhccc----------------
Confidence 0 0000000000 01222222344444444433
Q ss_pred cccCCccceeeEEeec-CCCCeEEEEeecCCCeEEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhhhcccC
Q 001477 329 VYSQDDLTKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDA 407 (1071)
Q Consensus 329 ~~~~d~~~~~~~~~~~-h~~~V~~~~fsp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h 407 (1071)
.+++. |....+|++||-+.+ .|++|+..|.|+++++.+|....+ ..+|
T Consensus 1094 -----------w~~frd~~~~fTc~afs~~~~-hL~vG~~~Geik~~nv~sG~~e~s-------------------~ncH 1142 (1516)
T KOG1832|consen 1094 -----------WRSFRDETALFTCIAFSGGTN-HLAVGSHAGEIKIFNVSSGSMEES-------------------VNCH 1142 (1516)
T ss_pred -----------chhhhccccceeeEEeecCCc-eEEeeeccceEEEEEccCcccccc-------------------cccc
Confidence 23344 677899999999987 789999999999999999987654 6789
Q ss_pred CCCeeEEEECCCCCEEEEEeC--CCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEcc
Q 001477 408 AISVNRCVWGPDGLMLGVAFS--KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV 485 (1071)
Q Consensus 408 ~~~v~~~~~spd~~~la~~~~--dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~ 485 (1071)
.++|+.+.=|.||..+.+.+. .....+|++.+-. ...+.+. .-.++.|+..... -+.|.....+.+||++
T Consensus 1143 ~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~--~~~Hsf~----ed~~vkFsn~~q~--r~~gt~~d~a~~YDvq 1214 (1516)
T KOG1832|consen 1143 QSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTG--GPRHSFD----EDKAVKFSNSLQF--RALGTEADDALLYDVQ 1214 (1516)
T ss_pred ccccccccccCCcceeeeeccccCchHHHhcccccc--Ccccccc----ccceeehhhhHHH--HHhcccccceEEEecc
Confidence 999999999999997776644 3357899987622 2111222 3567889876542 3445445678999999
Q ss_pred CCceeEEe-cC---CCCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCceeEEecCCCCcEEEEEEccCCCEEEEecc
Q 001477 486 AGRKQYTF-EG---HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGT 561 (1071)
Q Consensus 486 ~~~~~~~~-~~---h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 561 (1071)
++.++.++ .+ .+..-++..|+|.. .+++- || .+||++..+.+..+...... ..-.|+|.|.-++..+
T Consensus 1215 T~~~l~tylt~~~~~~y~~n~a~FsP~D--~LIln---dG--vLWDvR~~~aIh~FD~ft~~-~~G~FHP~g~eVIINS- 1285 (1516)
T KOG1832|consen 1215 TCSPLQTYLTDTVTSSYSNNLAHFSPCD--TLILN---DG--VLWDVRIPEAIHRFDQFTDY-GGGGFHPSGNEVIINS- 1285 (1516)
T ss_pred cCcHHHHhcCcchhhhhhccccccCCCc--ceEee---Cc--eeeeeccHHHHhhhhhheec-ccccccCCCceEEeec-
Confidence 99887763 22 22333667788864 33332 33 46999988766555433311 2235899999999875
Q ss_pred CCCCCCeEEEEeCCCCceeEEeecccccceeEEEEeCCCCEEEEE
Q 001477 562 SKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAA 606 (1071)
Q Consensus 562 ~~d~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 606 (1071)
.|||+++.+.++....... +.+.|+..|+.+++.
T Consensus 1286 --------EIwD~RTF~lLh~VP~Ldq---c~VtFNstG~VmYa~ 1319 (1516)
T KOG1832|consen 1286 --------EIWDMRTFKLLHSVPSLDQ---CAVTFNSTGDVMYAM 1319 (1516)
T ss_pred --------hhhhhHHHHHHhcCccccc---eEEEeccCccchhhh
Confidence 3899999998887776544 557799888877654
No 225
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=2.1e-12 Score=145.33 Aligned_cols=222 Identities=10% Similarity=0.080 Sum_probs=148.2
Q ss_pred ccCCCCeeEEEECCCCCEEEEEeC---CCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCC--cE
Q 001477 405 NDAAISVNRCVWGPDGLMLGVAFS---KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK--MI 479 (1071)
Q Consensus 405 ~~h~~~v~~~~~spd~~~la~~~~---dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~--~i 479 (1071)
..+...+.+.+|||||+.||..+. +..|.+|++.+++.. .+....+.+..++|+|||+. ++++.+.++ .|
T Consensus 195 t~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~----~l~~~~~~~~~~~~SPDG~~-La~~~~~~g~~~I 269 (429)
T PRK03629 195 HRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR----QVASFPRHNGAPAFSPDGSK-LAFALSKTGSLNL 269 (429)
T ss_pred ecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeE----EccCCCCCcCCeEECCCCCE-EEEEEcCCCCcEE
Confidence 346678999999999999987643 457999999887532 22223344567899999995 233334444 58
Q ss_pred EEEEccCCceeEEecCCCCCeEEEEecccCCccEEEEEec-CCeEEEE--EcCCCceeEEecCCCCcEEEEEEccCCCEE
Q 001477 480 KVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI-DGKIKAW--LYDYLGSRVDYDAPGNWCTMMAYSADGTRL 556 (1071)
Q Consensus 480 ~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~-d~~i~vw--d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 556 (1071)
++||+.+++... +..+...+....|+|++ +.|+..+. ++...+| |+..+.. ..+...........|+|||+++
T Consensus 270 ~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG--~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~~I 345 (429)
T PRK03629 270 YVMDLASGQIRQ-VTDGRSNNTEPTWFPDS--QNLAYTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFM 345 (429)
T ss_pred EEEECCCCCEEE-ccCCCCCcCceEECCCC--CEEEEEeCCCCCceEEEEECCCCCe-EEeecCCCCccCEEECCCCCEE
Confidence 999998887654 43445567888999865 66766654 4444555 5554433 3333344456678999999999
Q ss_pred EEeccCCCCCCeEEEEeCCCCceeEEeecccccceeEEEEeCCCCEEEEEeCCCc---EEEEeCCCCceeEEEecCCCCC
Q 001477 557 FSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQ---IKFWDMDNMNMLTTVDADGGLP 633 (1071)
Q Consensus 557 ~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~---i~iwd~~~~~~~~~~~~~~~~~ 633 (1071)
+..+.. ++...|.+||+.+++... +.... ......|+|||+.|+.++.++. +++++++ +.....+..+. .
T Consensus 346 a~~~~~-~g~~~I~~~dl~~g~~~~-Lt~~~--~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~-G~~~~~l~~~~--~ 418 (429)
T PRK03629 346 VMVSSN-GGQQHIAKQDLATGGVQV-LTDTF--LDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATD--G 418 (429)
T ss_pred EEEEcc-CCCceEEEEECCCCCeEE-eCCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEECC-CCCeEECccCC--C
Confidence 876542 235569999998876443 33221 2345789999999999886654 6777874 44455555433 3
Q ss_pred CcceEEEcC
Q 001477 634 ASPRLRFNK 642 (1071)
Q Consensus 634 ~v~~~~~s~ 642 (1071)
.+...+|+|
T Consensus 419 ~~~~p~Wsp 427 (429)
T PRK03629 419 QVKFPAWSP 427 (429)
T ss_pred CcCCcccCC
Confidence 577788887
No 226
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.55 E-value=2.3e-14 Score=145.81 Aligned_cols=273 Identities=15% Similarity=0.173 Sum_probs=212.2
Q ss_pred CeEEEEeecCCCeEEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeEEEECCCCCEEEEEe
Q 001477 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF 427 (1071)
Q Consensus 348 ~V~~~~fsp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~la~~~ 427 (1071)
+-..+.++.+|+. ++.|+.-|.|-.+|+.+++..... .-...|.++.|-.+.+++|++
T Consensus 131 GPY~~~ytrnGrh-lllgGrKGHlAa~Dw~t~~L~~Ei--------------------~v~Etv~Dv~~LHneq~~AVA- 188 (545)
T KOG1272|consen 131 GPYHLDYTRNGRH-LLLGGRKGHLAAFDWVTKKLHFEI--------------------NVMETVRDVTFLHNEQFFAVA- 188 (545)
T ss_pred CCeeeeecCCccE-EEecCCccceeeeecccceeeeee--------------------ehhhhhhhhhhhcchHHHHhh-
Confidence 5678899999985 566888999999999998766421 123468899999999999988
Q ss_pred CCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccCCceeEEecCCCCCeEEEEecc
Q 001477 428 SKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHH 507 (1071)
Q Consensus 428 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~ 507 (1071)
....+.|||-.+ ..+. .+..| ..|..+.|.|-.- +|++++..|.++.-|+.+|+.+..+....+.+..++-+|
T Consensus 189 QK~y~yvYD~~G-tElH---Clk~~-~~v~rLeFLPyHf--LL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP 261 (545)
T KOG1272|consen 189 QKKYVYVYDNNG-TELH---CLKRH-IRVARLEFLPYHF--LLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNP 261 (545)
T ss_pred hhceEEEecCCC-cEEe---ehhhc-Cchhhhcccchhh--eeeecccCCceEEEeechhhhhHHHHccCCccchhhcCC
Confidence 666799999665 3333 33333 4789999999765 899999999999999999999999988889999999888
Q ss_pred cCCccEEEEEecCCeEEEEEcCCCceeEEecCCCCcEEEEEEccCCCEEEEeccCCCCCCeEEEEeCCCCceeEEeeccc
Q 001477 508 KESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFR 587 (1071)
Q Consensus 508 ~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~ 587 (1071)
.+ ..+-+|...|+|.+|.....+....+-.|.++|.++++.++|+|+++.+. |..+.|||++....+.++....
T Consensus 262 ~N--aVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~----Dr~~kIWDlR~~~ql~t~~tp~ 335 (545)
T KOG1272|consen 262 YN--AVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGL----DRKVKIWDLRNFYQLHTYRTPH 335 (545)
T ss_pred cc--ceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeeccc----ccceeEeeeccccccceeecCC
Confidence 75 78889999999999999999999999999999999999999999999986 7889999999887776666522
Q ss_pred ccceeEEEEeCCCCEEEEEeCCCcEEEEeCC-CCc--eeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEE
Q 001477 588 KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMD-NMN--MLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKIL 659 (1071)
Q Consensus 588 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw 659 (1071)
....+++|..| +++.|....+.||.=. .+. .-...-.|.-...|..+.|.|-...|-+|...|.-.+.
T Consensus 336 --~a~~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsil 406 (545)
T KOG1272|consen 336 --PASNLSLSQKG--LLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSIL 406 (545)
T ss_pred --Ccccccccccc--ceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCceeEe
Confidence 56678888765 4455555679999522 211 11111112222478999999987778777766655444
No 227
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.54 E-value=6.4e-14 Score=145.22 Aligned_cols=238 Identities=11% Similarity=0.176 Sum_probs=164.6
Q ss_pred CCCCeEEEEeecCCCeEEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeEEEECC--CCCE
Q 001477 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP--DGLM 422 (1071)
Q Consensus 345 h~~~V~~~~fsp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~sp--d~~~ 422 (1071)
|.+.|.|+.|+.||. +|++||.|-.+.|||.-..+.+.. +-++|...|.++.|-| +.+.
T Consensus 49 H~GCVN~LeWn~dG~-lL~SGSDD~r~ivWd~~~~Kllhs------------------I~TgHtaNIFsvKFvP~tnnri 109 (758)
T KOG1310|consen 49 HTGCVNCLEWNADGE-LLASGSDDTRLIVWDPFEYKLLHS------------------ISTGHTANIFSVKFVPYTNNRI 109 (758)
T ss_pred ccceecceeecCCCC-EEeecCCcceEEeecchhcceeee------------------eecccccceeEEeeeccCCCeE
Confidence 899999999999998 899999999999999986665542 2478999999999999 5678
Q ss_pred EEEEeCCCeEEEEEecCCC-------ccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccCCcee-----
Q 001477 423 LGVAFSKHIVHLYTYNPTG-------ELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ----- 490 (1071)
Q Consensus 423 la~~~~dg~i~iwd~~~~~-------~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~----- 490 (1071)
+++|..|..|+++|+...+ .......+..|...|..++-.|++.+ .+-+++.||+|+-+|++....-
T Consensus 110 v~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Ph-tfwsasEDGtirQyDiREph~c~p~~~ 188 (758)
T KOG1310|consen 110 VLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPH-TFWSASEDGTIRQYDIREPHVCNPDED 188 (758)
T ss_pred EEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCc-eEEEecCCcceeeecccCCccCCcccc
Confidence 9999999999999998521 12223345678899999999999966 7899999999999999863211
Q ss_pred -----EEecCCCCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCceeEEe-----cCCCCcEEEEE-EccCCCEEEEe
Q 001477 491 -----YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY-----DAPGNWCTMMA-YSADGTRLFSC 559 (1071)
Q Consensus 491 -----~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~-----~~~~~~i~~~~-~s~~~~~l~~~ 559 (1071)
..+...--...++.++|..+ .+|+.|+.|-..++||.+.......- ........|+. |+|.+- .
T Consensus 189 ~~~~l~ny~~~lielk~ltisp~rp-~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hl----k 263 (758)
T KOG1310|consen 189 CPSILVNYNPQLIELKCLTISPSRP-YYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHL----K 263 (758)
T ss_pred ccHHHHHhchhhheeeeeeecCCCC-ceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccc----c
Confidence 11111223467888998754 89999999999999996432221100 00111111221 122110 0
Q ss_pred ccCCCCCCeEEEEeCCCCceeEEeecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEE
Q 001477 560 GTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTV 626 (1071)
Q Consensus 560 ~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 626 (1071)
. ..+...... ..++.+.|+|+|..++..-..-.|+++|+..++....+
T Consensus 264 n--------------~~gn~~~~~-----~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y 311 (758)
T KOG1310|consen 264 N--------------SQGNLDRYI-----TCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPY 311 (758)
T ss_pred C--------------cccccccce-----eeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence 0 001110000 03566889999987777555558999999987765544
No 228
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.54 E-value=5.8e-11 Score=134.06 Aligned_cols=277 Identities=13% Similarity=0.125 Sum_probs=187.8
Q ss_pred CCeEEEEeecCCCeEEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhhhcccCC--CCeeEEEECCCCCEEE
Q 001477 347 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAA--ISVNRCVWGPDGLMLG 424 (1071)
Q Consensus 347 ~~V~~~~fsp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~--~~v~~~~~spd~~~la 424 (1071)
+++.+.++-. +++|| | ....|.+||+..+..+.. ......+..|. +.+.+ .+-+++
T Consensus 8 ~~l~~~~~~~--~~lla-g-~gp~i~~yd~~s~~li~~-------------~~~~~~~~~H~~e~~~~l-----~~~~~v 65 (967)
T KOG0974|consen 8 GPLNLPQLVS--DYLLA-G-SGPEILVYDLSSGCLIRH-------------LIQSKILEVHRGEGKVKL-----LSGKIV 65 (967)
T ss_pred ccccchhhcc--ceeee-c-CCCceEEeeCCchhHhhh-------------hhhhccccccccccccee-----ccceEE
Confidence 4555555554 44544 3 356899999998876642 11111133440 00100 233445
Q ss_pred EEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccCCceeEEecCCCCCeE---
Q 001477 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVY--- 501 (1071)
Q Consensus 425 ~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~--- 501 (1071)
++..-+.+..=+.... .+..-...|....+..+.+ .++.+..++.+.+||...+.....+... ....
T Consensus 66 ~~~~~~~v~~~~~~~~-------~~~~~s~wi~g~~l~~e~k--~i~l~~~~ns~~i~d~~~~~~~~~i~~~-er~~l~~ 135 (967)
T KOG0974|consen 66 TCAKSDEVYVKEASNQ-------IIERFSDWIFGAKLFEENK--KIALVTSRNSLLIRDSKNSSVLSKIQSD-ERCTLYS 135 (967)
T ss_pred EEEeecceeecchhhh-------hhhhccccccccchhhhcc--eEEEEEcCceEEEEecccCceehhcCCC-ceEEEEe
Confidence 5543333322222111 1111233344455556666 6888888999999999888776665432 2211
Q ss_pred EEEecccCCccEEEEEecCCeEEEEEcCCCceeEEecCCCCcEEEEEEccCCCEEEEeccCCCCCCeEEEEeCCCCceeE
Q 001477 502 SVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKR 581 (1071)
Q Consensus 502 ~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~ 581 (1071)
++-+-...+.-++++|+.-+.|.+|+....+....+.+|.+.|.++.++.||+++++++. |..+++|++.+.+...
T Consensus 136 ~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~Sd----DRsiRlW~i~s~~~~~ 211 (967)
T KOG0974|consen 136 SLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSD----DRSIRLWPIDSREVLG 211 (967)
T ss_pred EEEEeccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEec----CcceeeeecccccccC
Confidence 111212223378999999999999998865556678999999999999999999999986 7889999999988776
Q ss_pred -EeecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEE
Q 001477 582 -TYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILA 660 (1071)
Q Consensus 582 -~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~ 660 (1071)
+.-+|.. .+..++|.|+ .++++++|.+.++|+.+. ..+..+..|.. ..+..++..++...+++++.|+.+++|+
T Consensus 212 ~~~fgHsa-Rvw~~~~~~n--~i~t~gedctcrvW~~~~-~~l~~y~~h~g-~~iw~~~~~~~~~~~vT~g~Ds~lk~~~ 286 (967)
T KOG0974|consen 212 CTGFGHSA-RVWACCFLPN--RIITVGEDCTCRVWGVNG-TQLEVYDEHSG-KGIWKIAVPIGVIIKVTGGNDSTLKLWD 286 (967)
T ss_pred cccccccc-eeEEEEeccc--eeEEeccceEEEEEeccc-ceehhhhhhhh-cceeEEEEcCCceEEEeeccCcchhhhh
Confidence 5566776 7888999997 999999999999997654 44446666654 3689999999999999999999999999
Q ss_pred cCCh
Q 001477 661 NSDG 664 (1071)
Q Consensus 661 ~~~~ 664 (1071)
....
T Consensus 287 l~~r 290 (967)
T KOG0974|consen 287 LNGR 290 (967)
T ss_pred hhcc
Confidence 7543
No 229
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.53 E-value=1.4e-12 Score=146.68 Aligned_cols=237 Identities=9% Similarity=0.036 Sum_probs=154.8
Q ss_pred ccccCCccceeeEEeecCCCCeEEEEeecCCCeEEEEEc--CCCeEEEEecCCCcccccccceeecccccccchhhhhcc
Q 001477 328 NVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGT--NVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLN 405 (1071)
Q Consensus 328 ~~~~~d~~~~~~~~~~~h~~~V~~~~fsp~g~~lla~gs--~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 405 (1071)
.+|..|...........+...+.+.+|||||+.++++.. .+..|.+|++.+++... +.
T Consensus 180 ~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~--------------------l~ 239 (429)
T PRK03629 180 ELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ--------------------VA 239 (429)
T ss_pred eEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE--------------------cc
Confidence 455555444444444557778999999999986554432 34579999998875332 11
Q ss_pred cCCCCeeEEEECCCCCEEEEE-eCCC--eEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeC-CC--cE
Q 001477 406 DAAISVNRCVWGPDGLMLGVA-FSKH--IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD-DK--MI 479 (1071)
Q Consensus 406 ~h~~~v~~~~~spd~~~la~~-~~dg--~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~-d~--~i 479 (1071)
...+.+..++|||||+.|+.. +.+| .|.+||+++++.. .+..+...+....|+|||+ .|+..+. ++ .|
T Consensus 240 ~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~----~lt~~~~~~~~~~wSPDG~--~I~f~s~~~g~~~I 313 (429)
T PRK03629 240 SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR----QVTDGRSNNTEPTWFPDSQ--NLAYTSDQAGRPQV 313 (429)
T ss_pred CCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE----EccCCCCCcCceEECCCCC--EEEEEeCCCCCceE
Confidence 223335568999999988865 3344 5888999887543 3334455678999999999 5555554 34 45
Q ss_pred EEEEccCCceeEEecCCCCCeEEEEecccCCccEEEEEecC---CeEEEEEcCCCceeEEecCCCCcEEEEEEccCCCEE
Q 001477 480 KVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAID---GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRL 556 (1071)
Q Consensus 480 ~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d---~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 556 (1071)
+++|+.+++. ..+..+........|+|++ ++++..+.+ ..|.+||+.++.... +.. ........|+|||+++
T Consensus 314 y~~d~~~g~~-~~lt~~~~~~~~~~~SpDG--~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt~-~~~~~~p~~SpDG~~i 388 (429)
T PRK03629 314 YKVNINGGAP-QRITWEGSQNQDADVSSDG--KFMVMVSSNGGQQHIAKQDLATGGVQV-LTD-TFLDETPSIAPNGTMV 388 (429)
T ss_pred EEEECCCCCe-EEeecCCCCccCEEECCCC--CEEEEEEccCCCceEEEEECCCCCeEE-eCC-CCCCCCceECCCCCEE
Confidence 5557666654 3343344455677888865 677665543 358889988765443 222 1223467899999999
Q ss_pred EEeccCCCCCCeEEEEeCCCCceeEEeecccccceeEEEEeC
Q 001477 557 FSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT 598 (1071)
Q Consensus 557 ~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 598 (1071)
+..+.++ +...+.++++. |.....+.++.. .+...+|+|
T Consensus 389 ~~~s~~~-~~~~l~~~~~~-G~~~~~l~~~~~-~~~~p~Wsp 427 (429)
T PRK03629 389 IYSSSQG-MGSVLNLVSTD-GRFKARLPATDG-QVKFPAWSP 427 (429)
T ss_pred EEEEcCC-CceEEEEEECC-CCCeEECccCCC-CcCCcccCC
Confidence 9887533 24457888874 666666766554 677788887
No 230
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.53 E-value=9.5e-13 Score=136.70 Aligned_cols=253 Identities=11% Similarity=0.123 Sum_probs=166.9
Q ss_pred CCeEEEEeecCCCeEEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeEEEE-----CCCCC
Q 001477 347 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW-----GPDGL 421 (1071)
Q Consensus 347 ~~V~~~~fsp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~-----spd~~ 421 (1071)
+.+....++-.|+++.+-- ...+.+|+...+..+.. ++....+.+- ...|-+| .|++-
T Consensus 124 g~~~~~~~~~~gd~lcFnv--g~~lyv~~~~g~~~~~~-------------pi~k~~y~gt--~P~cHdfn~~~a~~~g~ 186 (636)
T KOG2394|consen 124 GIVTNTNQSGKGDRLCFNV--GRELYVYSYRGAADLSK-------------PIDKREYKGT--SPTCHDFNSFTATPKGL 186 (636)
T ss_pred cceeeccccCCCCEEEEec--CCeEEEEEccCcchhcc-------------chhhhcccCC--CCceecccccccCCCCc
Confidence 3566667777787655432 45788999876443321 1111122221 2334444 34666
Q ss_pred EEEEEeCCCeEEEEEecCCCccceeeEee--cccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccCCceeEEecCCCCC
Q 001477 422 MLGVAFSKHIVHLYTYNPTGELRQHLEID--AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAP 499 (1071)
Q Consensus 422 ~la~~~~dg~i~iwd~~~~~~~~~~~~~~--~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~ 499 (1071)
-|..|-.-|.|.+.|....+..+ ..... -....|+|+.|-|.++. .++.+-.+|.++++|.. +...
T Consensus 187 dllIGf~tGqvq~idp~~~~~sk-lfne~r~i~ktsvT~ikWvpg~~~-~Fl~a~~sGnlyly~~~----------~~~~ 254 (636)
T KOG2394|consen 187 DLLIGFTTGQVQLIDPINFEVSK-LFNEERLINKSSVTCIKWVPGSDS-LFLVAHASGNLYLYDKE----------IVCG 254 (636)
T ss_pred ceEEeeccCceEEecchhhHHHH-hhhhcccccccceEEEEEEeCCCc-eEEEEEecCceEEeecc----------cccc
Confidence 78888888999999876632221 11111 12468999999998776 67777889999999861 1111
Q ss_pred eEEEEecccCCccEEEEEecCCeEEEEEcCCCceeEEecCCCCcEEEEEEccCCCEEEEeccCCCCCCeEEEEeCCCCce
Q 001477 500 VYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI 579 (1071)
Q Consensus 500 v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~ 579 (1071)
.+...+..-.++..+.....-+. .+...+..+......|...+|+|||++|++.+. |+.++|+|..+.++
T Consensus 255 ~t~p~~~~~k~~~~f~i~t~ksk------~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSq----DGfLRvF~fdt~eL 324 (636)
T KOG2394|consen 255 ATAPSYQALKDGDQFAILTSKSK------KTRNPVARWHIGEGSINEFAFSPDGKYLATVSQ----DGFLRIFDFDTQEL 324 (636)
T ss_pred CCCCcccccCCCCeeEEeeeecc------ccCCccceeEeccccccceeEcCCCceEEEEec----CceEEEeeccHHHH
Confidence 22222222222233332211110 111333344444558999999999999999985 89999999999888
Q ss_pred eEEeecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEc
Q 001477 580 KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFN 641 (1071)
Q Consensus 580 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s 641 (1071)
+..++..-+ ...|++|+|||++|++|++|.-|.||.+...+.+..-+ +|...|+.++|.
T Consensus 325 lg~mkSYFG-GLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGq--GHkSWVs~VaFD 383 (636)
T KOG2394|consen 325 LGVMKSYFG-GLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQ--GHKSWVSVVAFD 383 (636)
T ss_pred HHHHHhhcc-ceEEEEEcCCccEEEecCCcceEEEEEeccceEEEecc--ccccceeeEeec
Confidence 777776666 78899999999999999999999999999988877655 455689999998
No 231
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.52 E-value=1.9e-12 Score=129.73 Aligned_cols=272 Identities=11% Similarity=0.132 Sum_probs=194.1
Q ss_pred CCCeEEEEeecCCCe-EEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeEEEECCCCCEEE
Q 001477 346 GSNVMSMDFHPQQQT-ILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1071)
Q Consensus 346 ~~~V~~~~fsp~g~~-lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~la 424 (1071)
...|+.++|--+++. ++...+.+..+............. .|+.+. ......+|..++.. ...|.
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~----~~~~~~---------~~l~~~~I~gl~~~--dg~Li 119 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSS----LDDAKT---------VSLGTKSIKGLKLA--DGTLI 119 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccccCCccccc----cccccc---------cccccccccchhhc--CCEEE
Confidence 357888888877754 333344666677666665544332 122221 22344556665553 33677
Q ss_pred EEeCCCeEEEEEecCCCccce-eeEeecccCCEEEEEEecCCCceEEEEEeCC--CcEEEEEccCCceeEEecCC-----
Q 001477 425 VAFSKHIVHLYTYNPTGELRQ-HLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD--KMIKVWDVVAGRKQYTFEGH----- 496 (1071)
Q Consensus 425 ~~~~dg~i~iwd~~~~~~~~~-~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d--~~i~iwd~~~~~~~~~~~~h----- 496 (1071)
+|-.+|.+.+|..+.+..-.. ...+. ....+..|.-++.... ++++||.. ..+.+||+...+.+.+-+.-
T Consensus 120 tc~~sG~l~~~~~k~~d~hss~l~~la-~g~g~~~~r~~~~~p~-Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L 197 (412)
T KOG3881|consen 120 TCVSSGNLQVRHDKSGDLHSSKLIKLA-TGPGLYDVRQTDTDPY-IVATGGKENINELKIWDLEQSKQIWSAKNVPNDRL 197 (412)
T ss_pred EEecCCcEEEEeccCCccccccceeee-cCCceeeeccCCCCCc-eEecCchhcccceeeeecccceeeeeccCCCCccc
Confidence 788999999999985542111 11222 2345777777776665 67789998 89999999988666543321
Q ss_pred ----CCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCce-eEEecCCCCcEEEEEEccCCCEEEEeccCCCCCCeEEE
Q 001477 497 ----EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS-RVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVE 571 (1071)
Q Consensus 497 ----~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~-~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~i 571 (1071)
.-.++++.|.+..+...|++++.-+.+++||.+.+.. +..+.....+++++...|+|++++++.. .+.+..
T Consensus 198 ~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~----~g~l~~ 273 (412)
T KOG3881|consen 198 GLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNT----KGQLAK 273 (412)
T ss_pred cceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecc----cchhhe
Confidence 2345677788765568999999999999999997655 4577888899999999999999999864 677999
Q ss_pred EeCCCCceeEE-eecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcC
Q 001477 572 WNESEGAIKRT-YSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK 642 (1071)
Q Consensus 572 wd~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 642 (1071)
+|.+.++.... +.+..+ .++++..+|.+++++++|-|..|||+|+.+.+++...-... ..+++.+.+
T Consensus 274 FD~r~~kl~g~~~kg~tG-sirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs---~lt~il~~~ 341 (412)
T KOG3881|consen 274 FDLRGGKLLGCGLKGITG-SIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKS---RLTFILLRD 341 (412)
T ss_pred ecccCceeeccccCCccC-CcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhc---cccEEEecC
Confidence 99999998877 666666 89999999999999999999999999999977766554332 245555544
No 232
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=6e-12 Score=142.77 Aligned_cols=222 Identities=11% Similarity=0.040 Sum_probs=151.9
Q ss_pred cccCCCCeeEEEECCCCCEEEEEeC---CCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCc--
Q 001477 404 LNDAAISVNRCVWGPDGLMLGVAFS---KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKM-- 478 (1071)
Q Consensus 404 ~~~h~~~v~~~~~spd~~~la~~~~---dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~-- 478 (1071)
+..|...+.+.+|||||+.|+..+. +..|.+||+.+++.. .+..+.+.+.+.+|+|||+. ++++.+.++.
T Consensus 197 lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~----~l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~ 271 (435)
T PRK05137 197 LTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE----LVGNFPGMTFAPRFSPDGRK-VVMSLSQGGNTD 271 (435)
T ss_pred EecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE----EeecCCCcccCcEECCCCCE-EEEEEecCCCce
Confidence 4567889999999999999998764 468999999887542 34456677889999999995 3456666654
Q ss_pred EEEEEccCCceeEEecCCCCCeEEEEecccCCccEEEEEe-cCC--eEEEEEcCCCceeEEecCCCCcEEEEEEccCCCE
Q 001477 479 IKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA-IDG--KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTR 555 (1071)
Q Consensus 479 i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~-~d~--~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 555 (1071)
|++||+.+++. ..+..+........|+|++ ..++..+ .+| .|.+||+..+... .+......+....|+|||+.
T Consensus 272 Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG--~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~~~~~~~~~~~SpdG~~ 347 (435)
T PRK05137 272 IYTMDLRSGTT-TRLTDSPAIDTSPSYSPDG--SQIVFESDRSGSPQLYVMNADGSNPR-RISFGGGRYSTPVWSPRGDL 347 (435)
T ss_pred EEEEECCCCce-EEccCCCCccCceeEcCCC--CEEEEEECCCCCCeEEEEECCCCCeE-EeecCCCcccCeEECCCCCE
Confidence 77789887765 4455566667778898865 6666655 333 5778887655443 33333445667889999999
Q ss_pred EEEeccCCCCCCeEEEEeCCCCceeEEeecccccceeEEEEeCCCCEEEEEeCC------CcEEEEeCCCCceeEEEecC
Q 001477 556 LFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE------FQIKFWDMDNMNMLTTVDAD 629 (1071)
Q Consensus 556 l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~ 629 (1071)
++..... .+...|.+||..++.. ..+... . .+....|+|||+.|+..+.+ ..++++|+..+.. ..+...
T Consensus 348 ia~~~~~-~~~~~i~~~d~~~~~~-~~lt~~-~-~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~~~ 422 (435)
T PRK05137 348 IAFTKQG-GGQFSIGVMKPDGSGE-RILTSG-F-LVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVPTP 422 (435)
T ss_pred EEEEEcC-CCceEEEEEECCCCce-EeccCC-C-CCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce-EEccCC
Confidence 9877642 2345789999865543 333321 1 45678899999998775532 3588888876554 344322
Q ss_pred CCCCCcceEEEcC
Q 001477 630 GGLPASPRLRFNK 642 (1071)
Q Consensus 630 ~~~~~v~~~~~s~ 642 (1071)
..+...+|+|
T Consensus 423 ---~~~~~p~Wsp 432 (435)
T PRK05137 423 ---GDASDPAWSP 432 (435)
T ss_pred ---CCccCcccCC
Confidence 1356667776
No 233
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=1.5e-12 Score=146.68 Aligned_cols=240 Identities=15% Similarity=0.142 Sum_probs=152.7
Q ss_pred CCccccCCccceeeEEeecCCCCeEEEEeecCCCeEEEEEcCC--CeEEEEecCCCcccccccceeecccccccchhhhh
Q 001477 326 TPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNV--GDISLWEVGSRERLAHKPFKVWDISAASMPLQNAL 403 (1071)
Q Consensus 326 ~~~~~~~d~~~~~~~~~~~h~~~V~~~~fsp~g~~lla~gs~d--g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 403 (1071)
...+|..|...........+...+.+.+|||||+.++++...+ ..|.+||+.+++...
T Consensus 175 ~~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-------------------- 234 (427)
T PRK02889 175 RYQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-------------------- 234 (427)
T ss_pred ccEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE--------------------
Confidence 3456666654444445556788999999999998655544333 469999998876432
Q ss_pred cccCCCCeeEEEECCCCCEEEE-EeCCCeEEEEEec--CCCccceeeEeecccCCEEEEEEecCCCceEEEEEe-CCCcE
Q 001477 404 LNDAAISVNRCVWGPDGLMLGV-AFSKHIVHLYTYN--PTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG-DDKMI 479 (1071)
Q Consensus 404 ~~~h~~~v~~~~~spd~~~la~-~~~dg~i~iwd~~--~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~-~d~~i 479 (1071)
+....+.+.+.+|||||+.|+. .+.+|...||.++ ++. .. .+..+.+.+....|+|||+. |+..+ .++..
T Consensus 235 l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~---~lt~~~~~~~~~~wSpDG~~--l~f~s~~~g~~ 308 (427)
T PRK02889 235 VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LR---RLTQSSGIDTEPFFSPDGRS--IYFTSDRGGAP 308 (427)
T ss_pred eecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cE---ECCCCCCCCcCeEEcCCCCE--EEEEecCCCCc
Confidence 2223345678999999998875 5677777777654 333 22 44455556678899999994 44443 45566
Q ss_pred EEEEc--cCCceeEEecCCCCCeEEEEecccCCccEEEEEecCC---eEEEEEcCCCceeEEecCCCCcEEEEEEccCCC
Q 001477 480 KVWDV--VAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDG---KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGT 554 (1071)
Q Consensus 480 ~iwd~--~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~---~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~ 554 (1071)
.+|.+ .+++... +..+........|+|++ ++++..+.++ .|.+||+.+++...... ........|+|||+
T Consensus 309 ~Iy~~~~~~g~~~~-lt~~g~~~~~~~~SpDG--~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~--~~~~~~p~~spdg~ 383 (427)
T PRK02889 309 QIYRMPASGGAAQR-VTFTGSYNTSPRISPDG--KLLAYISRVGGAFKLYVQDLATGQVTALTD--TTRDESPSFAPNGR 383 (427)
T ss_pred EEEEEECCCCceEE-EecCCCCcCceEECCCC--CEEEEEEccCCcEEEEEEECCCCCeEEccC--CCCccCceECCCCC
Confidence 66654 4444322 22222334456788754 7777766554 69999998776543322 22346789999999
Q ss_pred EEEEeccCCCCCCeEEEEeCCCCceeEEeecccccceeEEEEeCC
Q 001477 555 RLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTT 599 (1071)
Q Consensus 555 ~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 599 (1071)
.|+..+..+ +...+.+.+. ++.....+..+.+ .+...+|+|-
T Consensus 384 ~l~~~~~~~-g~~~l~~~~~-~g~~~~~l~~~~g-~~~~p~wsp~ 425 (427)
T PRK02889 384 YILYATQQG-GRSVLAAVSS-DGRIKQRLSVQGG-DVREPSWGPF 425 (427)
T ss_pred EEEEEEecC-CCEEEEEEEC-CCCceEEeecCCC-CCCCCccCCC
Confidence 999877532 3455777777 4655555554433 5666777763
No 234
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=2.1e-12 Score=146.30 Aligned_cols=237 Identities=12% Similarity=0.106 Sum_probs=153.6
Q ss_pred ccccCCccceeeEEeecCCCCeEEEEeecCCCeEEEEEcC--CCeEEEEecCCCcccccccceeecccccccchhhhhcc
Q 001477 328 NVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTN--VGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLN 405 (1071)
Q Consensus 328 ~~~~~d~~~~~~~~~~~h~~~V~~~~fsp~g~~lla~gs~--dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 405 (1071)
.+|.+|....+......+...+.+.+|||||+.++++... +..|.+||+.+++... +.
T Consensus 185 ~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~--------------------l~ 244 (433)
T PRK04922 185 ALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL--------------------VA 244 (433)
T ss_pred EEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE--------------------ec
Confidence 3555555444455555677889999999999865544322 3479999998776432 22
Q ss_pred cCCCCeeEEEECCCCCEEEE-EeCCC--eEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEe-CCCc--E
Q 001477 406 DAAISVNRCVWGPDGLMLGV-AFSKH--IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG-DDKM--I 479 (1071)
Q Consensus 406 ~h~~~v~~~~~spd~~~la~-~~~dg--~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~-~d~~--i 479 (1071)
...+...+.+|||||+.|+. .+.+| .|.+||+.+++.. .+..+.......+|+|||+ .|+..+ .++. |
T Consensus 245 ~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~----~lt~~~~~~~~~~~spDG~--~l~f~sd~~g~~~i 318 (433)
T PRK04922 245 SFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT----RLTNHFGIDTEPTWAPDGK--SIYFTSDRGGRPQI 318 (433)
T ss_pred cCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE----ECccCCCCccceEECCCCC--EEEEEECCCCCceE
Confidence 33444567899999998764 44555 5999999887532 3445555667899999999 455544 3444 7
Q ss_pred EEEEccCCceeEEecCCCCCeEEEEecccCCccEEEEEecCC---eEEEEEcCCCceeEEecCCCCcEEEEEEccCCCEE
Q 001477 480 KVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDG---KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRL 556 (1071)
Q Consensus 480 ~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~---~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 556 (1071)
+++|+.+++... +..+.......+|+|++ +.++..+.++ .|.+||+.+++.. .+. +........|+|||+++
T Consensus 319 y~~dl~~g~~~~-lt~~g~~~~~~~~SpDG--~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i 393 (433)
T PRK04922 319 YRVAASGGSAER-LTFQGNYNARASVSPDG--KKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMV 393 (433)
T ss_pred EEEECCCCCeEE-eecCCCCccCEEECCCC--CEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEE
Confidence 777777766433 22233344567898865 6776654433 5899999876654 332 22234567899999998
Q ss_pred EEeccCCCCCCeEEEEeCCCCceeEEeecccccceeEEEEeC
Q 001477 557 FSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT 598 (1071)
Q Consensus 557 ~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 598 (1071)
+..+.. .+...|++++.. +.....+..+.. .+...+|+|
T Consensus 394 ~~~s~~-~g~~~L~~~~~~-g~~~~~l~~~~g-~~~~p~wsp 432 (433)
T PRK04922 394 LYATRE-GGRGVLAAVSTD-GRVRQRLVSADG-EVREPAWSP 432 (433)
T ss_pred EEEEec-CCceEEEEEECC-CCceEEcccCCC-CCCCCccCC
Confidence 877643 345678899885 444555544333 456666765
No 235
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.50 E-value=9.4e-11 Score=125.73 Aligned_cols=521 Identities=11% Similarity=0.125 Sum_probs=309.9
Q ss_pred eEEeec-CCCCeEEEEeecCCCeEEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeEEEEC
Q 001477 339 VVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 417 (1071)
Q Consensus 339 ~~~~~~-h~~~V~~~~fsp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~s 417 (1071)
.-+++. |++.|.-+.|+.+.+ -|.++..+|.|.+|-+-.|+.... .+-...++-|.+++|+
T Consensus 63 mNQtLeGH~~sV~vvTWNe~~Q-KLTtSDt~GlIiVWmlykgsW~EE-----------------MiNnRnKSvV~SmsWn 124 (1189)
T KOG2041|consen 63 MNQTLEGHNASVMVVTWNENNQ-KLTTSDTSGLIIVWMLYKGSWCEE-----------------MINNRNKSVVVSMSWN 124 (1189)
T ss_pred hhhhhccCcceEEEEEeccccc-cccccCCCceEEEEeeecccHHHH-----------------HhhCcCccEEEEEEEc
Confidence 345666 999999999999987 478889999999999988764321 1123356779999999
Q ss_pred CCCCEEEEEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccCCc-------ee
Q 001477 418 PDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR-------KQ 490 (1071)
Q Consensus 418 pd~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~-------~~ 490 (1071)
.||..++....||.|.+=.+++++.... .+.+. -...+.|++|.+ .++.+-..|.++++|.+..- +.
T Consensus 125 ~dG~kIcIvYeDGavIVGsvdGNRIwgK--eLkg~--~l~hv~ws~D~~--~~Lf~~ange~hlydnqgnF~~Kl~~~c~ 198 (1189)
T KOG2041|consen 125 LDGTKICIVYEDGAVIVGSVDGNRIWGK--ELKGQ--LLAHVLWSEDLE--QALFKKANGETHLYDNQGNFERKLEKDCE 198 (1189)
T ss_pred CCCcEEEEEEccCCEEEEeeccceecch--hcchh--eccceeecccHH--HHHhhhcCCcEEEecccccHHHhhhhceE
Confidence 9999999999999999988887654432 23222 245789999998 56677778999999964321 11
Q ss_pred E----EecCCCCCeEEEEeccc------CCccEEEEEecCCeEEEEEcCCCceeEEecCCCCcEEEEEEccCCCEEEEec
Q 001477 491 Y----TFEGHEAPVYSVCPHHK------ESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCG 560 (1071)
Q Consensus 491 ~----~~~~h~~~v~~i~~~~~------~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 560 (1071)
. .+......+..+.|... ++...++.+..+|.+.+-.-.+......+... -.+....|+++|..|+.++
T Consensus 199 Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtg-m~~vgakWnh~G~vLAvcG 277 (1189)
T KOG2041|consen 199 VNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTG-MKIVGAKWNHNGAVLAVCG 277 (1189)
T ss_pred EeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEecc-cEeecceecCCCcEEEEcc
Confidence 1 11112233555555421 24478999999999988866655555544433 5788999999999999998
Q ss_pred cCCCC----C-CeEEEEeCCCCceeEEeecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCc
Q 001477 561 TSKEG----E-SHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPAS 635 (1071)
Q Consensus 561 ~~~d~----~-~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 635 (1071)
.+.+. + +.|..+.. -|+.+.+++.... .|++++|-..|-.++.+ .|+.|++=+++..-.-..+..
T Consensus 278 ~~~da~~~~d~n~v~Fysp-~G~i~gtlkvpg~-~It~lsWEg~gLriA~A-vdsfiyfanIRP~ykWgy~e~------- 347 (1189)
T KOG2041|consen 278 NDSDADEPTDSNKVHFYSP-YGHIVGTLKVPGS-CITGLSWEGTGLRIAIA-VDSFIYFANIRPEYKWGYIEE------- 347 (1189)
T ss_pred CcccccCccccceEEEecc-chhheEEEecCCc-eeeeeEEcCCceEEEEE-ecceEEEEeecccceEEEeee-------
Confidence 64332 2 25666654 4888888887666 89999998877666655 578888877664322222210
Q ss_pred ceEEEcCCCCEEEEEeCCCcEEEEEcCChhhhhhhhcCCccccccCCCCCCCCCCccccccCCCCccccccCCCCCCCCC
Q 001477 636 PRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDR 715 (1071)
Q Consensus 636 ~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 715 (1071)
.+.|--.+.- .-.-.|.+||..+.++.++...+.......
T Consensus 348 -TvVy~y~~~e----~p~y~i~Fwdtk~nek~vK~V~~~~~~a~~----------------------------------- 387 (1189)
T KOG2041|consen 348 -TVVYVYQKEE----LPQYGIMFWDTKTNEKTVKTVTHFENMAFY----------------------------------- 387 (1189)
T ss_pred -EEEEEEccCC----CcceEEEEEecccChhhhhhhcceeehhee-----------------------------------
Confidence 1111111100 012357899998886666655442211000
Q ss_pred CCCcccccccCCCCcccccccccccc-cccCccceeccCCCCCcccceeeec------CCCcCCCceEEEEEecccchhh
Q 001477 716 GPPAVSISSLGTIDGSRLVDVKPRVA-EDVDKIKSWRIPDISDPSQIKALRL------PDSIAASKVVRLIYTNSGLSLL 788 (1071)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~w~~~~~~~~~~~~~~~~------~~~~~~~~v~~l~~s~~g~~l~ 788 (1071)
.+.-.+.. ..++.+.-+..- ........+.+ +-...-..|.-.-..-++..++
T Consensus 388 ------------------~ehCvL~~~~d~~~i~e~s~l--e~~~~~~~l~LCNSIGT~lD~kytdirP~Fv~vn~~~vv 447 (1189)
T KOG2041|consen 388 ------------------REHCVLINRQDDGVIPEYSTL--ENRSRVYFLQLCNSIGTSLDYKYTDIRPKFVCVNGICVV 447 (1189)
T ss_pred ------------------cccEEEEeccccCCCcchhhh--hcccceEEEeeecccCCcCCCCcceeeeeEEEecceEEE
Confidence 00000000 001111111000 00000000000 0000111222222233455555
Q ss_pred hccccceeEEEecccccCCCCCccceeecceeccCCCCCccccccCCCCCCCCCeEEEEEecCCcEEEEEe-CCeEEEEE
Q 001477 789 ALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFN 867 (1071)
Q Consensus 789 ~~~~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~v~~s~d~~~la~~~-dg~i~vwd 867 (1071)
.++.+ .+.+|.+....+...- .+... |.++. ..+.-.| +|+ |+++ +
T Consensus 448 iAS~e-~~~iWhy~~pK~~s~l--------------~~~k~--------rkegr-~h~Ddtp------~ga~d~~l---~ 494 (1189)
T KOG2041|consen 448 IASEE-RYFIWHYVLPKFNSVL--------------AGVKI--------RKEGR-FHGDDTP------EGAQDRTL---E 494 (1189)
T ss_pred Eeccc-cEEEEEEeccchhhhh--------------hhhhh--------ccccc-ccCCCCc------cchhhcee---e
Confidence 55544 4677765543221100 00000 10010 1111112 222 3322 1
Q ss_pred CCCCeEEEEEeCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEccCCeEEEEecCcCCCeeEEEEcCCCCEEEEEeCCCc
Q 001477 868 MMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQ 947 (1071)
Q Consensus 868 ~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~~~v~~l~~s~d~~~l~s~~~d~~ 947 (1071)
.. ..++.+..++|.+++.+. ++|.++-..|.|+-|.+...-+..... -+..|.+++..-+..++|.-.--|.
T Consensus 495 ys----~kt~~G~~DpICAl~~sd---k~l~vareSG~I~rySl~nv~l~n~y~-~n~~~y~~~lNCnstRlAiId~~gv 566 (1189)
T KOG2041|consen 495 YS----TKTLLGSKDPICALCISD---KFLMVARESGGIYRYSLNNVVLTNSYP-VNPSIYSIKLNCNSTRLAIIDLVGV 566 (1189)
T ss_pred cc----ceeeccCCCcceeeeecc---eEEEEEeccCceEEEEecceeeeeccc-cCchheeEeeccCcchhhhhhhhce
Confidence 11 355677888999999975 799999999999999999887666554 4456899999888999999888899
Q ss_pred EEEEECC---CCceeeeeeecCCCCCCCCCCCceEEEEccCCCEEEEE-ECCeEEEEeC
Q 001477 948 LCMWSID---KWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQISVYDS 1002 (1071)
Q Consensus 948 v~vWd~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d~~i~vwd~ 1002 (1071)
+.+.|+. ++..+.. +..... ..|..+.|..|+..+.+- ....+.+++-
T Consensus 567 ~tf~dLd~d~~g~ql~~--~~~~er-----rDVWd~~Wa~dNp~llAlmeKtrmyifrg 618 (1189)
T KOG2041|consen 567 VTFQDLDYDFDGDQLKL--IYTSER-----RDVWDYEWAQDNPNLLALMEKTRMYIFRG 618 (1189)
T ss_pred eeeeecccccCcceeee--eehhhh-----hhhhhhhhccCCchHHhhhhhceEEEecC
Confidence 9998887 2333332 111111 568899999888776664 4456777764
No 236
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=2.9e-12 Score=145.15 Aligned_cols=223 Identities=14% Similarity=0.097 Sum_probs=148.8
Q ss_pred cccCCCCeeEEEECCCCCEEEEEeC---CCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCC--c
Q 001477 404 LNDAAISVNRCVWGPDGLMLGVAFS---KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK--M 478 (1071)
Q Consensus 404 ~~~h~~~v~~~~~spd~~~la~~~~---dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~--~ 478 (1071)
+..+...+.+.+|||||+.|+.++. +..|.+||+.+++.. .+..+.+...+++|+|||+. ++++.+.++ .
T Consensus 199 lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~----~l~~~~g~~~~~~~SpDG~~-l~~~~s~~g~~~ 273 (433)
T PRK04922 199 ILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE----LVASFRGINGAPSFSPDGRR-LALTLSRDGNPE 273 (433)
T ss_pred eecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE----EeccCCCCccCceECCCCCE-EEEEEeCCCCce
Confidence 4457778999999999999998864 346999999887542 23334455668899999995 344555555 6
Q ss_pred EEEEEccCCceeEEecCCCCCeEEEEecccCCccEEEEEe-cCCe--EEEEEcCCCceeEEecCCCCcEEEEEEccCCCE
Q 001477 479 IKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA-IDGK--IKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTR 555 (1071)
Q Consensus 479 i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~-~d~~--i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 555 (1071)
|++||+.+++. ..+..+.......+|+|++ ..++.++ .+|. |.++|+..++.. .+..........+|+|||++
T Consensus 274 Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG--~~l~f~sd~~g~~~iy~~dl~~g~~~-~lt~~g~~~~~~~~SpDG~~ 349 (433)
T PRK04922 274 IYVMDLGSRQL-TRLTNHFGIDTEPTWAPDG--KSIYFTSDRGGRPQIYRVAASGGSAE-RLTFQGNYNARASVSPDGKK 349 (433)
T ss_pred EEEEECCCCCe-EECccCCCCccceEECCCC--CEEEEEECCCCCceEEEEECCCCCeE-EeecCCCCccCEEECCCCCE
Confidence 99999988875 4455565556778898864 6666655 4554 556666555433 22233344557899999999
Q ss_pred EEEeccCCCCCCeEEEEeCCCCceeEEeecccccceeEEEEeCCCCEEEEEeC---CCcEEEEeCCCCceeEEEecCCCC
Q 001477 556 LFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGD---EFQIKFWDMDNMNMLTTVDADGGL 632 (1071)
Q Consensus 556 l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~ 632 (1071)
++....+ ++...|.+||+.+++... +... . ......|+|+|++++..+. .+.|+++++.. .....+..+.
T Consensus 350 Ia~~~~~-~~~~~I~v~d~~~g~~~~-Lt~~-~-~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g-~~~~~l~~~~-- 422 (433)
T PRK04922 350 IAMVHGS-GGQYRIAVMDLSTGSVRT-LTPG-S-LDESPSFAPNGSMVLYATREGGRGVLAAVSTDG-RVRQRLVSAD-- 422 (433)
T ss_pred EEEEECC-CCceeEEEEECCCCCeEE-CCCC-C-CCCCceECCCCCEEEEEEecCCceEEEEEECCC-CceEEcccCC--
Confidence 9876532 234579999998877553 3221 1 2345789999999887664 34688888854 3444444322
Q ss_pred CCcceEEEcC
Q 001477 633 PASPRLRFNK 642 (1071)
Q Consensus 633 ~~v~~~~~s~ 642 (1071)
..+...+|+|
T Consensus 423 g~~~~p~wsp 432 (433)
T PRK04922 423 GEVREPAWSP 432 (433)
T ss_pred CCCCCCccCC
Confidence 2456677776
No 237
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.50 E-value=4.3e-11 Score=124.10 Aligned_cols=358 Identities=12% Similarity=0.157 Sum_probs=222.4
Q ss_pred EEEcCCCceeEEecCCCCcEEEEEEccCCCEEEEeccCCCCCCeEEEEeCCCCceeEEeecccccceeEEEEeCCCCEEE
Q 001477 525 AWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFL 604 (1071)
Q Consensus 525 vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 604 (1071)
+|...+......+....-++..+++||.|.+|++.. ...|.+|+...+..+..+... .|..+.|+|.+++|.
T Consensus 16 f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~-----~~~V~~~~g~~~~~l~~~~~~---~V~~~~fSP~~kYL~ 87 (561)
T COG5354 16 FWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEH-----AAGVECWGGPSKAKLVRFRHP---DVKYLDFSPNEKYLV 87 (561)
T ss_pred eecCccccccccccccCcchhheeecCcchheehhh-----ccceEEccccchhheeeeecC---CceecccCcccceee
Confidence 344444333334444555888999999999999875 334999998877655555432 688899999999999
Q ss_pred EEeCCC---------------cEEEEeCCCCceeEEEecCCCCCCcc-eEEEcCCCCEEEEEeCCCcEEEEEcCChhhhh
Q 001477 605 AAGDEF---------------QIKFWDMDNMNMLTTVDADGGLPASP-RLRFNKEGSLLAVTTSDNGIKILANSDGVRLL 668 (1071)
Q Consensus 605 ~~~~dg---------------~i~iwd~~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~ 668 (1071)
+-+..+ .+.+||..++..+..+.........+ -+.|+-+..++|-.. ...+.|+++ ++ ..
T Consensus 88 tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv-~~sl~i~e~-t~-n~- 163 (561)
T COG5354 88 TWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVV-GSSLYIHEI-TD-NI- 163 (561)
T ss_pred eeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhc-cCeEEEEec-CC-cc-
Confidence 865433 49999999999999887654422233 678888777666553 347888886 32 00
Q ss_pred hhhcCCccccccCCCCCCCCCCccccccCCCCccccccCCCCCCCCCCCCcccccccCCCCcccccccccccccccCccc
Q 001477 669 RMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIK 748 (1071)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 748 (1071)
..++....
T Consensus 164 ---~~~p~~~l--------------------------------------------------------------------- 171 (561)
T COG5354 164 ---EEHPFKNL--------------------------------------------------------------------- 171 (561)
T ss_pred ---ccCchhhc---------------------------------------------------------------------
Confidence 00000000
Q ss_pred eeccCCCCCcccceeeecCCCcCCCceEEEEEecccch--hh-----hccccceeEEEecccccCCCCCccceeecceec
Q 001477 749 SWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLS--LL-----ALASNAVHKLWKWQRTERNPSGKATANVAPQLW 821 (1071)
Q Consensus 749 ~w~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~--l~-----~~~~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~ 821 (1071)
....|....++|.|.. |+ ..+..+.+++|.+.
T Consensus 172 ----------------------r~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp------------------- 210 (561)
T COG5354 172 ----------------------RPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIP------------------- 210 (561)
T ss_pred ----------------------cccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEcc-------------------
Confidence 0122344444444311 00 01223445555433
Q ss_pred cCCCCCccc-cccCCCCCCCCCeEEEEEecCCcEEEEEe------------CCeEEEEECCCCeEEEEEeCCCCCeEEEE
Q 001477 822 QPPSGTLMT-NDINESKPTEESAACIALSKNDSYVMSAS------------GGKVSLFNMMTFKVMTMFMSPPPAATFLA 888 (1071)
Q Consensus 822 ~~~~~~~~~-~~~~~~~h~~~~v~~v~~s~d~~~la~~~------------dg~i~vwd~~~~~~~~~~~~~~~~i~~l~ 888 (1071)
.+..+. ..+- .-.-..+.|.+.|+++.+-- ...+.++++....+.... .-.++|...+
T Consensus 211 ---~~s~l~tk~lf-----k~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~-~~~~pVhdf~ 281 (561)
T COG5354 211 ---KNSVLVTKNLF-----KVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK-DLKDPVHDFT 281 (561)
T ss_pred ---CCCeeeeeeeE-----eecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceec-cccccceeee
Confidence 221111 0010 11123456677777665321 245888888754444333 5678999999
Q ss_pred EcCCCCCEEEE--EeCCCeEEEEEccCCeEEEEecCcCCCeeEEEEcCCCCEEEEEeCC---CcEEEEECCCCceeeeee
Q 001477 889 FHPQDNNIIAI--GMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGAD---AQLCMWSIDKWEKLKSRF 963 (1071)
Q Consensus 889 ~sp~~~~~la~--g~~dg~v~vwd~~~~~~~~~l~~h~~~v~~l~~s~d~~~l~s~~~d---~~v~vWd~~~~~~~~~~~ 963 (1071)
|.| .++.+++ |-.+..+-++|++.. +... .....=..+.|||.+++++.+|-| |.+-+||..+.-....
T Consensus 282 W~p-~S~~F~vi~g~~pa~~s~~~lr~N-l~~~--~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~-- 355 (561)
T COG5354 282 WEP-LSSRFAVISGYMPASVSVFDLRGN-LRFY--FPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAG-- 355 (561)
T ss_pred ecc-cCCceeEEecccccceeecccccc-eEEe--cCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEE--
Confidence 999 5554443 357889999999877 3333 233344568899999999999876 5699999988554322
Q ss_pred ecCCCCCCCCCCCceEEEEccCCCEEEEE-------ECCeEEEEeCCCCceeecCCCCCCCCCeeEEEEecCCcEEEEEe
Q 001477 964 IQAPAGRQSPLVGETKVQFHNDQTHLLVV-------HESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGF 1036 (1071)
Q Consensus 964 ~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-------~d~~i~vwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~t~~ 1036 (1071)
...+ ...+-+.|+|||.++.+. .|..|.|||+.+..+. ..+.+.|.|.|++..+.+
T Consensus 356 --~~~~-----~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f----------el~~~~W~p~~~~~ttsS 418 (561)
T COG5354 356 --AFNG-----LNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF----------ELTNITWDPSGQYVTTSS 418 (561)
T ss_pred --Eeec-----CCceEeeccCCceEEEecCCCcccccCcceEEEEecCchhh----------hhhhccccCCcccceeec
Confidence 2222 234667899999998874 2789999999655443 345677777777776666
Q ss_pred CCC
Q 001477 1037 CDG 1039 (1071)
Q Consensus 1037 ~Dg 1039 (1071)
.+.
T Consensus 419 s~~ 421 (561)
T COG5354 419 SCP 421 (561)
T ss_pred cCC
Confidence 554
No 238
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.50 E-value=3.3e-10 Score=128.05 Aligned_cols=194 Identities=15% Similarity=0.178 Sum_probs=150.0
Q ss_pred CeEEEEeecCCCeEEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhhhcccCCC-----CeeEEEECCCCCE
Q 001477 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAI-----SVNRCVWGPDGLM 422 (1071)
Q Consensus 348 ~V~~~~fsp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~-----~v~~~~~spd~~~ 422 (1071)
.|....+.-+.+ .++.++.+..+.|||...+..... ..+.. ...-+.++++.-+
T Consensus 89 wi~g~~l~~e~k-~i~l~~~~ns~~i~d~~~~~~~~~--------------------i~~~er~~l~~~~~~g~s~~~~~ 147 (967)
T KOG0974|consen 89 WIFGAKLFEENK-KIALVTSRNSLLIRDSKNSSVLSK--------------------IQSDERCTLYSSLIIGDSAEELY 147 (967)
T ss_pred cccccchhhhcc-eEEEEEcCceEEEEecccCceehh--------------------cCCCceEEEEeEEEEeccCcEEE
Confidence 344455555555 567777789999999987654432 01221 1223446777789
Q ss_pred EEEEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccCCceeE-EecCCCCCeE
Q 001477 423 LGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY-TFEGHEAPVY 501 (1071)
Q Consensus 423 la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~h~~~v~ 501 (1071)
+++|+.-+.|.+|+....+... .+.+|.+.|.++.|+.||. ++++.|+|+++++|++.+++... +.-+|..+|+
T Consensus 148 i~~gsv~~~iivW~~~~dn~p~---~l~GHeG~iF~i~~s~dg~--~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw 222 (967)
T KOG0974|consen 148 IASGSVFGEIIVWKPHEDNKPI---RLKGHEGSIFSIVTSLDGR--YIASVSDDRSIRLWPIDSREVLGCTGFGHSARVW 222 (967)
T ss_pred EEeccccccEEEEeccccCCcc---eecccCCceEEEEEccCCc--EEEEEecCcceeeeecccccccCcccccccceeE
Confidence 9999999999999998433222 5779999999999999999 89999999999999999988776 6668999999
Q ss_pred EEEecccCCccEEEEEecCCeEEEEEcCCCceeEEecCC-CCcEEEEEEccCCCEEEEeccCCCCCCeEEEEeCCC
Q 001477 502 SVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP-GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE 576 (1071)
Q Consensus 502 ~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~-~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~ 576 (1071)
.++|.|. .+++++.|-+.++|+.+..... .+..| ...+..++..++...+++++. |+.+++|++..
T Consensus 223 ~~~~~~n----~i~t~gedctcrvW~~~~~~l~-~y~~h~g~~iw~~~~~~~~~~~vT~g~----Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 223 ACCFLPN----RIITVGEDCTCRVWGVNGTQLE-VYDEHSGKGIWKIAVPIGVIIKVTGGN----DSTLKLWDLNG 289 (967)
T ss_pred EEEeccc----eeEEeccceEEEEEecccceeh-hhhhhhhcceeEEEEcCCceEEEeecc----Ccchhhhhhhc
Confidence 9999874 8999999999999976544333 55555 448899999888888888874 88899999864
No 239
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.49 E-value=4.9e-12 Score=142.64 Aligned_cols=223 Identities=12% Similarity=0.076 Sum_probs=145.7
Q ss_pred ccCCCCeeEEEECCCCCEEEEEeCC---CeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEE
Q 001477 405 NDAAISVNRCVWGPDGLMLGVAFSK---HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKV 481 (1071)
Q Consensus 405 ~~h~~~v~~~~~spd~~~la~~~~d---g~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~i 481 (1071)
..+...+.+.+|||||+.|+..+.+ ..|.+||+.+++.. .+....+.+.+.+|+|||+. ++++.+.++...+
T Consensus 192 ~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~----~l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~I 266 (427)
T PRK02889 192 LSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRR----VVANFKGSNSAPAWSPDGRT-LAVALSRDGNSQI 266 (427)
T ss_pred ccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEE----EeecCCCCccceEECCCCCE-EEEEEccCCCceE
Confidence 4567789999999999999987643 46999999987643 23334456678999999994 3446677877666
Q ss_pred EE--ccCCceeEEecCCCCCeEEEEecccCCccEEEEEe-cCCeEEEEEcC--CCceeEEecCCCCcEEEEEEccCCCEE
Q 001477 482 WD--VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA-IDGKIKAWLYD--YLGSRVDYDAPGNWCTMMAYSADGTRL 556 (1071)
Q Consensus 482 wd--~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~-~d~~i~vwd~~--~~~~~~~~~~~~~~i~~~~~s~~~~~l 556 (1071)
|. +..+. ...+..+........|+|++ ..++..+ .++...+|.++ .+.. ..+..........+|+|||+++
T Consensus 267 y~~d~~~~~-~~~lt~~~~~~~~~~wSpDG--~~l~f~s~~~g~~~Iy~~~~~~g~~-~~lt~~g~~~~~~~~SpDG~~I 342 (427)
T PRK02889 267 YTVNADGSG-LRRLTQSSGIDTEPFFSPDG--RSIYFTSDRGGAPQIYRMPASGGAA-QRVTFTGSYNTSPRISPDGKLL 342 (427)
T ss_pred EEEECCCCC-cEECCCCCCCCcCeEEcCCC--CEEEEEecCCCCcEEEEEECCCCce-EEEecCCCCcCceEECCCCCEE
Confidence 65 44443 55565566666778898865 6666554 45666777654 3322 2222233344567899999999
Q ss_pred EEeccCCCCCCeEEEEeCCCCceeEEeecccccceeEEEEeCCCCEEEEEeCCC---cEEEEeCCCCceeEEEecCCCCC
Q 001477 557 FSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEF---QIKFWDMDNMNMLTTVDADGGLP 633 (1071)
Q Consensus 557 ~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~ 633 (1071)
+..+.. .+...|.+||+.+++....... . ......|+|+|+.|+.++.++ .+++.++ ++.....+..+.+
T Consensus 343 a~~s~~-~g~~~I~v~d~~~g~~~~lt~~-~--~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g-- 415 (427)
T PRK02889 343 AYISRV-GGAFKLYVQDLATGQVTALTDT-T--RDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQGG-- 415 (427)
T ss_pred EEEEcc-CCcEEEEEEECCCCCeEEccCC-C--CccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCCC--
Confidence 876542 2244799999988875443222 1 235678999999988876433 3556666 3555555543322
Q ss_pred CcceEEEcCC
Q 001477 634 ASPRLRFNKE 643 (1071)
Q Consensus 634 ~v~~~~~s~~ 643 (1071)
.+...+|+|-
T Consensus 416 ~~~~p~wsp~ 425 (427)
T PRK02889 416 DVREPSWGPF 425 (427)
T ss_pred CCCCCccCCC
Confidence 4566777763
No 240
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.49 E-value=1.4e-11 Score=129.50 Aligned_cols=309 Identities=13% Similarity=0.143 Sum_probs=198.6
Q ss_pred eeeccCCCCCCccccCC------ccceeeEEeecCCCCeEEEEeecCCCeEEEEE-----cCC-----CeEEEEecCCCc
Q 001477 317 EVSFAGVAHTPNVYSQD------DLTKTVVRTLNQGSNVMSMDFHPQQQTILLVG-----TNV-----GDISLWEVGSRE 380 (1071)
Q Consensus 317 ~v~~s~~~~~~~~~~~d------~~~~~~~~~~~h~~~V~~~~fsp~g~~lla~g-----s~d-----g~i~iwd~~~~~ 380 (1071)
..++|++|+..+....+ ......+.+.... .+.++.|||.|. +|.+= ..+ -.+.+|+++++.
T Consensus 39 v~~~S~~G~lfA~~~~~~v~i~~~~~~~~~lt~~~~-~~~~L~fSP~g~-yL~T~e~~~i~~~~~~~~pn~~v~~vet~~ 116 (566)
T KOG2315|consen 39 VFAYSNNGRLFAYSDNQVVKVFEIATLKVVLCVELK-KTYDLLFSPKGN-YLLTWEPWAIYGPKNASNPNVLVYNVETGV 116 (566)
T ss_pred eEEEcCCCcEEEEEcCCeEEEEEccCCcEEEEeccc-eeeeeeeccccc-ccccccccccccCCCCCCCceeeeeeccce
Confidence 35566666655443322 2233234444434 899999999997 45431 111 246677777743
Q ss_pred ccccccceeecccccccchhhhhcccCCCCeeEEEECCCCCEEEEEeCCCeEEEEEecCCCccceeeEeecccCCEEEEE
Q 001477 381 RLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIA 460 (1071)
Q Consensus 381 ~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~ 460 (1071)
.... + + .....+ ++..||+|..+.|-- ..+.+++|+..+.+.+. -.-|...|+...
T Consensus 117 ~~s~--~------------q---~k~Q~~--W~~qfs~dEsl~arl-v~nev~f~~~~~f~~~~----~kl~~~~i~~f~ 172 (566)
T KOG2315|consen 117 QRSQ--I------------Q---KKMQNG--WVPQFSIDESLAARL-VSNEVQFYDLGSFKTIQ----HKLSVSGITMLS 172 (566)
T ss_pred ehhh--e------------e---hhhhcC--cccccccchhhhhhh-hcceEEEEecCCcccee----eeeeccceeeEE
Confidence 3221 0 0 111222 688999987754433 45679999998744332 223678899999
Q ss_pred EecCCCceEEEE-----EeCCCcEEEEEccCCcee-----EEecCCCCCeEEEEecccCCccEEEEE-ecC---------
Q 001477 461 FAHPNKQLCIVT-----CGDDKMIKVWDVVAGRKQ-----YTFEGHEAPVYSVCPHHKESIQFIFST-AID--------- 520 (1071)
Q Consensus 461 ~s~d~~~~~l~s-----~~~d~~i~iwd~~~~~~~-----~~~~~h~~~v~~i~~~~~~~~~~l~s~-~~d--------- 520 (1071)
+||.+....+++ +|.-+.|+||.......- ++| ....-..+.|++.+.+-++++. ..|
T Consensus 173 lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksF--Fkadkvqm~WN~~gt~LLvLastdVDktn~SYYGE 250 (566)
T KOG2315|consen 173 LSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSF--FKADKVQMKWNKLGTALLVLASTDVDKTNASYYGE 250 (566)
T ss_pred ecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccc--cccceeEEEeccCCceEEEEEEEeecCCCcccccc
Confidence 999856545553 456678999987632211 122 1222345667766654333332 223
Q ss_pred CeEEEEEcCCCceeEEecCCCCcEEEEEEccCCCEEEEeccCCCCCCeEEEEeCCCCceeEEeecccccceeEEEEeCCC
Q 001477 521 GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR 600 (1071)
Q Consensus 521 ~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 600 (1071)
.++++.+++ +.....--...++|.++.|+|+++-++++.. -.-..+.++|++ +.++..+... +-+++-|+|.|
T Consensus 251 q~Lyll~t~-g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyG--fMPAkvtifnlr-~~~v~df~eg---pRN~~~fnp~g 323 (566)
T KOG2315|consen 251 QTLYLLATQ-GESVSVPLLKEGPVHDVTWSPSGREFAVVYG--FMPAKVTIFNLR-GKPVFDFPEG---PRNTAFFNPHG 323 (566)
T ss_pred ceEEEEEec-CceEEEecCCCCCceEEEECCCCCEEEEEEe--cccceEEEEcCC-CCEeEeCCCC---CccceEECCCC
Confidence 357777776 2222222334779999999999987765532 135568999987 6776666543 45778899999
Q ss_pred CEEEEEe---CCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeC------CCcEEEEEcCCh
Q 001477 601 NRFLAAG---DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTS------DNGIKILANSDG 664 (1071)
Q Consensus 601 ~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------dg~v~iw~~~~~ 664 (1071)
++++.+| ..|.|.|||+.+.+++..+... ..+-+.|+|||+++++++. |+.++||+....
T Consensus 324 ~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~----~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~ 392 (566)
T KOG2315|consen 324 NIILLAGFGNLPGDMEVWDVPNRKLIAKFKAA----NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGS 392 (566)
T ss_pred CEEEEeecCCCCCceEEEeccchhhccccccC----CceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCc
Confidence 9999877 4589999999998888888654 3467899999999999876 789999998544
No 241
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.49 E-value=4.2e-11 Score=116.92 Aligned_cols=240 Identities=15% Similarity=0.221 Sum_probs=151.8
Q ss_pred cEEEEEEccCCCEEEEeccCCCCCCeEEEEeCCCCceeEEeecccccceeEEEEeCCCCEEEE-EeCC------CcEEEE
Q 001477 543 WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLA-AGDE------FQIKFW 615 (1071)
Q Consensus 543 ~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d------g~i~iw 615 (1071)
...+++|+.|...++++.. .-.++|+..--+.......+.. .+.-+..--..++++. ||.+ ..|.||
T Consensus 7 ~~lsvs~NQD~ScFava~~-----~Gfriyn~~P~ke~~~r~~~~~-G~~~veMLfR~N~laLVGGg~~pky~pNkviIW 80 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATD-----TGFRIYNCDPFKESASRQFIDG-GFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIW 80 (346)
T ss_pred ceeEEEEccCCceEEEEec-----CceEEEecCchhhhhhhccccC-chhhhhHhhhhceEEEecCCCCCCCCCceEEEE
Confidence 4456899999999988863 2388888764222111111111 1111111122345554 3322 479999
Q ss_pred eCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCChhhhhhhhcCCccccccCCCCCCCCCCccccc
Q 001477 616 DMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINA 695 (1071)
Q Consensus 616 d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 695 (1071)
|=...+++.++... .+|.++.+.++ .|++.- .+.|.+|...+..+.++.+.....+
T Consensus 81 DD~k~~~i~el~f~---~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NP------------------ 136 (346)
T KOG2111|consen 81 DDLKERCIIELSFN---SEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNP------------------ 136 (346)
T ss_pred ecccCcEEEEEEec---cceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCC------------------
Confidence 97777788777654 36889999876 455544 5699999988664544443322110
Q ss_pred cCCCCccccccCCCCCCCCCCCCcccccccCCCCcccccccccccccccCccceeccCCCCCcccceeeecCCCcCCCce
Q 001477 696 LGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKV 775 (1071)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~v 775 (1071)
. ..
T Consensus 137 ---------------------------------------k--------------------------------------Gl 139 (346)
T KOG2111|consen 137 ---------------------------------------K--------------------------------------GL 139 (346)
T ss_pred ---------------------------------------C--------------------------------------ce
Confidence 0 00
Q ss_pred EEEEEecccchhhh-ccccceeEEEecccccCCCCCccceeecceeccCCCCCccccccCCCCCCCCCeEEEEEecCCcE
Q 001477 776 VRLIYTNSGLSLLA-LASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSY 854 (1071)
Q Consensus 776 ~~l~~s~~g~~l~~-~~~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~v~~s~d~~~ 854 (1071)
.+++-..+...|+. |..-|.|+|-++...... ... .... | .+.|.|++++.+|..
T Consensus 140 C~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~-------------------~p~--~I~A--H-~s~Iacv~Ln~~Gt~ 195 (346)
T KOG2111|consen 140 CSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPN-------------------APS--IINA--H-DSDIACVALNLQGTL 195 (346)
T ss_pred EeecCCCCceEEEcCCCccceEEEEEhhhcCcC-------------------Cce--EEEc--c-cCceeEEEEcCCccE
Confidence 11111111111111 222467777665532221 000 1222 8 999999999999999
Q ss_pred EEEEe-CCe-EEEEECCCCeEEEEEeCCC--CCeEEEEEcCCCCCEEEEEeCCCeEEEEEccCC
Q 001477 855 VMSAS-GGK-VSLFNMMTFKVMTMFMSPP--PAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD 914 (1071)
Q Consensus 855 la~~~-dg~-i~vwd~~~~~~~~~~~~~~--~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~ 914 (1071)
+|+++ .|+ |+|||..+++.+.+++.-. ..|.+++||| +..+||+.|+.|+|+||.+...
T Consensus 196 vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp-~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 196 VATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSP-NSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred EEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCC-CccEEEEEcCCCeEEEEEeecC
Confidence 99999 777 9999999999999987533 4699999999 9999999999999999998753
No 242
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.48 E-value=1.1e-13 Score=140.93 Aligned_cols=231 Identities=15% Similarity=0.180 Sum_probs=191.9
Q ss_pred CCeeEEEECCCCCEEEEEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccCCc
Q 001477 409 ISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR 488 (1071)
Q Consensus 409 ~~v~~~~~spd~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~ 488 (1071)
-.-+.+.++.+|+.|+.|+..|.+..+|+.++.... ++. -...|.++.|..+.+ ++|. ...+.++||| ..|.
T Consensus 130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~---Ei~-v~Etv~Dv~~LHneq--~~AV-AQK~y~yvYD-~~Gt 201 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHF---EIN-VMETVRDVTFLHNEQ--FFAV-AQKKYVYVYD-NNGT 201 (545)
T ss_pred cCCeeeeecCCccEEEecCCccceeeeecccceeee---eee-hhhhhhhhhhhcchH--HHHh-hhhceEEEec-CCCc
Confidence 346788999999999999999999999999987655 332 345799999998877 4554 4577899999 7888
Q ss_pred eeEEecCCCCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCceeEEecCCCCcEEEEEEccCCCEEEEeccCCCCCCe
Q 001477 489 KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESH 568 (1071)
Q Consensus 489 ~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~ 568 (1071)
.++.++.| ..|..+.|.|.. -+|++++..|.++.-|+.+++.+..+....+.+..++-+|-+-.+-.|.. .|+
T Consensus 202 ElHClk~~-~~v~rLeFLPyH--fLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~Ghs----nGt 274 (545)
T KOG1272|consen 202 ELHCLKRH-IRVARLEFLPYH--FLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHS----NGT 274 (545)
T ss_pred EEeehhhc-Cchhhhcccchh--heeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCC----Cce
Confidence 88888754 578999999875 67888899999999999999999888888888999999998888878764 889
Q ss_pred EEEEeCCCCceeEEeecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEE
Q 001477 569 LVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLA 648 (1071)
Q Consensus 569 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 648 (1071)
|.+|.....+++..+-.|.+ +|.++++.++|.++++.|.|..++|||++....+.++... .+...+++|..| +||
T Consensus 275 VSlWSP~skePLvKiLcH~g-~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp---~~a~~ls~Sqkg-lLA 349 (545)
T KOG1272|consen 275 VSLWSPNSKEPLVKILCHRG-PVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTP---HPASNLSLSQKG-LLA 349 (545)
T ss_pred EEecCCCCcchHHHHHhcCC-CcceEEECCCCcEEeecccccceeEeeeccccccceeecC---CCcccccccccc-cee
Confidence 99999999999998999988 9999999999999999999999999999988766666542 256778888766 344
Q ss_pred EEeCCCcEEEEE
Q 001477 649 VTTSDNGIKILA 660 (1071)
Q Consensus 649 ~~~~dg~v~iw~ 660 (1071)
.+. ...|.||.
T Consensus 350 ~~~-G~~v~iw~ 360 (545)
T KOG1272|consen 350 LSY-GDHVQIWK 360 (545)
T ss_pred eec-CCeeeeeh
Confidence 443 44889995
No 243
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.47 E-value=9.9e-12 Score=141.04 Aligned_cols=239 Identities=11% Similarity=0.028 Sum_probs=156.7
Q ss_pred CCccccCCccceeeEEeecCCCCeEEEEeecCCCeEEEEEc--CCCeEEEEecCCCcccccccceeecccccccchhhhh
Q 001477 326 TPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGT--NVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNAL 403 (1071)
Q Consensus 326 ~~~~~~~d~~~~~~~~~~~h~~~V~~~~fsp~g~~lla~gs--~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 403 (1071)
...+|..|...........|...+.+.+|||||+.++.+.. .+..|.+||+.+++...
T Consensus 181 ~~~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~-------------------- 240 (435)
T PRK05137 181 IKRLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL-------------------- 240 (435)
T ss_pred ceEEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE--------------------
Confidence 34566666655555555568889999999999996555432 24689999998876432
Q ss_pred cccCCCCeeEEEECCCCCEEEE-EeCCCe--EEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEe-CC--C
Q 001477 404 LNDAAISVNRCVWGPDGLMLGV-AFSKHI--VHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG-DD--K 477 (1071)
Q Consensus 404 ~~~h~~~v~~~~~spd~~~la~-~~~dg~--i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~-~d--~ 477 (1071)
+..+.+.+.+.+|||||+.|+. .+.++. |.+||+.++... .+..+........|+|||+ .|+..+ .+ .
T Consensus 241 l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~----~Lt~~~~~~~~~~~spDG~--~i~f~s~~~g~~ 314 (435)
T PRK05137 241 VGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT----RLTDSPAIDTSPSYSPDGS--QIVFESDRSGSP 314 (435)
T ss_pred eecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceE----EccCCCCccCceeEcCCCC--EEEEEECCCCCC
Confidence 3345667788999999998764 455554 777788876532 3445666678899999999 455444 33 3
Q ss_pred cEEEEEccCCceeEEecCCCCCeEEEEecccCCccEEEEEecC---CeEEEEEcCCCceeEEecCCCCcEEEEEEccCCC
Q 001477 478 MIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAID---GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGT 554 (1071)
Q Consensus 478 ~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d---~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~ 554 (1071)
.|++||+.+++.. .+..+...+....|+|++ +.|+..+.+ ..|.+||+...... .+.. ...+....|+|||+
T Consensus 315 ~Iy~~d~~g~~~~-~lt~~~~~~~~~~~SpdG--~~ia~~~~~~~~~~i~~~d~~~~~~~-~lt~-~~~~~~p~~spDG~ 389 (435)
T PRK05137 315 QLYVMNADGSNPR-RISFGGGRYSTPVWSPRG--DLIAFTKQGGGQFSIGVMKPDGSGER-ILTS-GFLVEGPTWAPNGR 389 (435)
T ss_pred eEEEEECCCCCeE-EeecCCCcccCeEECCCC--CEEEEEEcCCCceEEEEEECCCCceE-eccC-CCCCCCCeECCCCC
Confidence 6888897766543 343345556778898865 677665543 35788887654432 2222 23467889999999
Q ss_pred EEEEeccCCCCC--CeEEEEeCCCCceeEEeecccccceeEEEEeC
Q 001477 555 RLFSCGTSKEGE--SHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT 598 (1071)
Q Consensus 555 ~l~~~~~~~d~~--~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 598 (1071)
.|+..+...... ..++++|+..+.. ..+.. .. .+...+|+|
T Consensus 390 ~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~~-~~-~~~~p~Wsp 432 (435)
T PRK05137 390 VIMFFRQTPGSGGAPKLYTVDLTGRNE-REVPT-PG-DASDPAWSP 432 (435)
T ss_pred EEEEEEccCCCCCcceEEEEECCCCce-EEccC-CC-CccCcccCC
Confidence 998765432221 4688888875544 34432 22 355566765
No 244
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.46 E-value=3.8e-10 Score=123.45 Aligned_cols=213 Identities=18% Similarity=0.215 Sum_probs=138.6
Q ss_pred CCeEEEEEecCCcEEEEEe--CCeEEEEECCC-CeEEEE---Ee----------CCCCCeEEEEEcCCCCCEEEEEe-CC
Q 001477 841 ESAACIALSKNDSYVMSAS--GGKVSLFNMMT-FKVMTM---FM----------SPPPAATFLAFHPQDNNIIAIGM-ED 903 (1071)
Q Consensus 841 ~~v~~v~~s~d~~~la~~~--dg~i~vwd~~~-~~~~~~---~~----------~~~~~i~~l~~sp~~~~~la~g~-~d 903 (1071)
.....++++|++++|+++. +|.|.++++.. +.+... +. .......++.|+| +++++++.. ..
T Consensus 87 ~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p-dg~~v~v~dlG~ 165 (345)
T PF10282_consen 87 SSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP-DGRFVYVPDLGA 165 (345)
T ss_dssp SCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T-TSSEEEEEETTT
T ss_pred CCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECC-CCCEEEEEecCC
Confidence 3455688999999999987 78999999876 443332 21 1234578999999 888776654 34
Q ss_pred CeEEEEEccCCe--EE--EEec-CcCCCeeEEEEcCCCCEEEEEe-CCCcEEEEECC--CCceeeeeeecCCCCCCCCCC
Q 001477 904 SSVQIYNVRVDE--VK--TKLK-GHQNRITGLAFSPTLNALVSSG-ADAQLCMWSID--KWEKLKSRFIQAPAGRQSPLV 975 (1071)
Q Consensus 904 g~v~vwd~~~~~--~~--~~l~-~h~~~v~~l~~s~d~~~l~s~~-~d~~v~vWd~~--~~~~~~~~~~~~~~~~~~~~~ 975 (1071)
..|++|++.... +. ..+. .....-..++|+||+++++... .+++|.++++. .++......+...........
T Consensus 166 D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~ 245 (345)
T PF10282_consen 166 DRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGEN 245 (345)
T ss_dssp TEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSS
T ss_pred CEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccC
Confidence 589999997654 32 2222 2344578999999999887665 57789999988 443322222222211111112
Q ss_pred CceEEEEccCCCEEEEEE--CCeEEEEeC--CCCceeecCCCCCCCCCeeEEEEecCCcEEEEEe-CCCeEEEEEc--CC
Q 001477 976 GETKVQFHNDQTHLLVVH--ESQISVYDS--KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGF-CDGAIGVFDA--ET 1048 (1071)
Q Consensus 976 ~v~~~~~s~dg~~l~~~~--d~~i~vwd~--~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~t~~-~Dg~i~vwd~--~~ 1048 (1071)
....++++|||++|.++. .+.|.+|++ ....+...............++|+|||++|+++. .++.|.+|++ ++
T Consensus 246 ~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~t 325 (345)
T PF10282_consen 246 APAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDT 325 (345)
T ss_dssp SEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTT
T ss_pred CceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCC
Confidence 578999999999999975 668999999 2233333222111144589999999999999776 5568999876 67
Q ss_pred CeEEEE
Q 001477 1049 LRFRCR 1054 (1071)
Q Consensus 1049 ~~~~~~ 1054 (1071)
|++...
T Consensus 326 G~l~~~ 331 (345)
T PF10282_consen 326 GKLTPV 331 (345)
T ss_dssp TEEEEE
T ss_pred CcEEEe
Confidence 776543
No 245
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.46 E-value=4.6e-11 Score=125.66 Aligned_cols=336 Identities=14% Similarity=0.163 Sum_probs=202.9
Q ss_pred CCcEEEEEEccCCCEEEEeccCCCCCCeEEEEeCCCCceeEEeecccccceeEEEEeCCCCEEEEE-----eCC-----C
Q 001477 541 GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAA-----GDE-----F 610 (1071)
Q Consensus 541 ~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-----~~d-----g 610 (1071)
....+..++|++|++++.+. +..+.|++..++..+.+.... .+..+.|+|.++++.+- ..+ -
T Consensus 34 ~~~~~v~~~S~~G~lfA~~~-----~~~v~i~~~~~~~~~lt~~~~---~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~p 105 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGRLFAYSD-----NQVVKVFEIATLKVVLCVELK---KTYDLLFSPKGNYLLTWEPWAIYGPKNASNP 105 (566)
T ss_pred CCcceeEEEcCCCcEEEEEc-----CCeEEEEEccCCcEEEEeccc---eeeeeeecccccccccccccccccCCCCCCC
Confidence 33567889999999999885 556999998888644444333 47789999999998762 122 3
Q ss_pred cEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCChhhhhhhhcCCccccccCCCCCCCCCC
Q 001477 611 QIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKP 690 (1071)
Q Consensus 611 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (1071)
.+.+|+++++.....+...... -++..|++|..+.+ --..+.+.+|+..+.......+......
T Consensus 106 n~~v~~vet~~~~s~~q~k~Q~--~W~~qfs~dEsl~a-rlv~nev~f~~~~~f~~~~~kl~~~~i~------------- 169 (566)
T KOG2315|consen 106 NVLVYNVETGVQRSQIQKKMQN--GWVPQFSIDESLAA-RLVSNEVQFYDLGSFKTIQHKLSVSGIT------------- 169 (566)
T ss_pred ceeeeeeccceehhheehhhhc--Ccccccccchhhhh-hhhcceEEEEecCCccceeeeeecccee-------------
Confidence 4779999996666655543322 25888988875433 3345689999987642222222211100
Q ss_pred ccccccCCCCccccccCCCCCCCCCCCCcccccccCCCCcccccccccccccccCccceeccCCCCCcc--cceeeecCC
Q 001477 691 LTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPS--QIKALRLPD 768 (1071)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~--~~~~~~~~~ 768 (1071)
.+.++|... ...+..+ .+ -.-+.-..+++|......... ..+.+.
T Consensus 170 --------------~f~lSpgp~-----~~~vAvy-------vP----e~kGaPa~vri~~~~~~~~~~~~a~ksFF--- 216 (566)
T KOG2315|consen 170 --------------MLSLSPGPE-----PPFVAVY-------VP----EKKGAPASVRIYKYPEEGQHQPVANKSFF--- 216 (566)
T ss_pred --------------eEEecCCCC-----CceEEEE-------cc----CCCCCCcEEEEeccccccccchhhhcccc---
Confidence 011111100 0000000 00 001122567777776322111 111111
Q ss_pred CcCCCceEEEEEecccchhhhccccceeEEEecccccCCCCCccceeecceeccCCCCCccccccCCCCCCCCCeEEEEE
Q 001477 769 SIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIAL 848 (1071)
Q Consensus 769 ~~~~~~v~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~v~~ 848 (1071)
...-..+.|++-|.-|++.... |++.. .....+..++.+.+.. |......+.. .++|.++.|
T Consensus 217 ---kadkvqm~WN~~gt~LLvLast------dVDkt----n~SYYGEq~Lyll~t~-g~s~~V~L~k----~GPVhdv~W 278 (566)
T KOG2315|consen 217 ---KADKVQMKWNKLGTALLVLAST------DVDKT----NASYYGEQTLYLLATQ-GESVSVPLLK----EGPVHDVTW 278 (566)
T ss_pred ---ccceeEEEeccCCceEEEEEEE------eecCC----CccccccceEEEEEec-CceEEEecCC----CCCceEEEE
Confidence 1122346666666544332210 01100 0111112223333444 4434444554 789999999
Q ss_pred ecCCcEEEEEe---CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCCEEEEEeCC---CeEEEEEccCCeEEEEecC
Q 001477 849 SKNDSYVMSAS---GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMED---SSVQIYNVRVDEVKTKLKG 922 (1071)
Q Consensus 849 s~d~~~la~~~---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~d---g~v~vwd~~~~~~~~~l~~ 922 (1071)
+|+++-+++.. --++.|||++ +.++..+ ..++-+++-|+| .|++|+.++-+ |.|.|||+.+.+++..+..
T Consensus 279 ~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~fnp-~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a 354 (566)
T KOG2315|consen 279 SPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFNP-HGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKA 354 (566)
T ss_pred CCCCCEEEEEEecccceEEEEcCC-CCEeEeC--CCCCccceEECC-CCCEEEEeecCCCCCceEEEeccchhhcccccc
Confidence 99999887765 4789999986 5555554 567788999999 88888887754 7999999999999988876
Q ss_pred cCCCeeEEEEcCCCCEEEEEeC------CCcEEEEECCCCc
Q 001477 923 HQNRITGLAFSPTLNALVSSGA------DAQLCMWSIDKWE 957 (1071)
Q Consensus 923 h~~~v~~l~~s~d~~~l~s~~~------d~~v~vWd~~~~~ 957 (1071)
-.. +-..|+|||.+++|+.. |..++||++....
T Consensus 355 ~~t--t~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~ 393 (566)
T KOG2315|consen 355 ANT--TVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSL 393 (566)
T ss_pred CCc--eEEEEcCCCcEEEEEeccccEEecCCeEEEEecCce
Confidence 544 45789999999999874 6779999998733
No 246
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.44 E-value=9.5e-12 Score=122.38 Aligned_cols=344 Identities=14% Similarity=0.245 Sum_probs=216.1
Q ss_pred ceeEEeecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCC-CCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCcE
Q 001477 578 AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMD-NMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGI 656 (1071)
Q Consensus 578 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v 656 (1071)
..+..++|+.+ .++....-|...-+++.+.|.+++||--. .++.-..+.. ....+++++.+.++...|++|-..|++
T Consensus 15 ~ll~~~eG~~d-~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~-~mP~~~~~~~y~~e~~~L~vg~~ngtv 92 (404)
T KOG1409|consen 15 ELLSKIEGSQD-DVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYH-YMPSPCSAMEYVSESRRLYVGQDNGTV 92 (404)
T ss_pred hhhhhhcCchh-hhhhheeccCCCCeEEccccceeeeEEeccccccCchhhh-hCCCCceEeeeeccceEEEEEEecceE
Confidence 34556777776 67777777888889999999999999644 4444444432 223478999999999999999999999
Q ss_pred EEEEcCChhhhhhhhcCCccccccCCCCCCCCCCccccccCCCCccccccCCCCCCCCCCCCcccccccCCCCccccccc
Q 001477 657 KILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDV 736 (1071)
Q Consensus 657 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 736 (1071)
.-+.+..........+
T Consensus 93 tefs~sedfnkm~~~r---------------------------------------------------------------- 108 (404)
T KOG1409|consen 93 TEFALSEDFNKMTFLK---------------------------------------------------------------- 108 (404)
T ss_pred EEEEhhhhhhhcchhh----------------------------------------------------------------
Confidence 8887654311111000
Q ss_pred ccccccccCccceeccCCCCCcccceeeecCCCcCCCceEEEEEecccchhhhccccceeEEEecccccCCCCCccceee
Q 001477 737 KPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANV 816 (1071)
Q Consensus 737 ~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~ 816 (1071)
.| ..|..++..+.|+-.-.++++.+.|..+. |....
T Consensus 109 ------------~~------------------~~h~~~v~~~if~~~~e~V~s~~~dk~~~-~hc~e------------- 144 (404)
T KOG1409|consen 109 ------------DY------------------LAHQARVSAIVFSLTHEWVLSTGKDKQFA-WHCTE------------- 144 (404)
T ss_pred ------------hh------------------hhhhcceeeEEecCCceeEEEeccccceE-EEeec-------------
Confidence 00 01667778888888888888888876554 32211
Q ss_pred cceeccCCCCCccccccCCCCCCCCCeEEEEEecCCcEEEEEe-CCeEEEEE--CCCCeEEEEEeCCCCCeEEEEEcCCC
Q 001477 817 APQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFN--MMTFKVMTMFMSPPPAATFLAFHPQD 893 (1071)
Q Consensus 817 ~~~~~~~~~~~~~~~~~~~~~h~~~~v~~v~~s~d~~~la~~~-dg~i~vwd--~~~~~~~~~~~~~~~~i~~l~~sp~~ 893 (1071)
.|..+.... - ....+++.+.- .+...|. .|.|..-. .....++.++.+|.+.+++++|.| .
T Consensus 145 --------~~~~lg~Y~----~-~~~~t~~~~d~--~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~-~ 208 (404)
T KOG1409|consen 145 --------SGNRLGGYN----F-ETPASALQFDA--LYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDP-G 208 (404)
T ss_pred --------cCCcccceE----e-eccCCCCceee--EEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcC-C
Confidence 111100000 0 01111111111 1334444 45544433 345678889999999999999999 8
Q ss_pred CCEEEEEeCCCeEEEEEccCCe-EEEEecCcCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeee-----cCC
Q 001477 894 NNIIAIGMEDSSVQIYNVRVDE-VKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFI-----QAP 967 (1071)
Q Consensus 894 ~~~la~g~~dg~v~vwd~~~~~-~~~~l~~h~~~v~~l~~s~d~~~l~s~~~d~~v~vWd~~~~~~~~~~~~-----~~~ 967 (1071)
.++|.+|..|..|.+||+...+ ...++.+|.+.|..+...+--+.|++++.||.|.+|++..........+ +.-
T Consensus 209 ~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c 288 (404)
T KOG1409|consen 209 QRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKC 288 (404)
T ss_pred CcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhh
Confidence 8999999999999999998654 3567889999999999988899999999999999999876443211110 000
Q ss_pred CC-------------------CC-CCC-CCceEEEEccCCCEEEEEECCeEEEEeCCCCceee-----c-CCCCCCCCCe
Q 001477 968 AG-------------------RQ-SPL-VGETKVQFHNDQTHLLVVHESQISVYDSKLECSRS-----W-SPKDALPAPI 1020 (1071)
Q Consensus 968 ~~-------------------~~-~~~-~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~~-----~-~~~~~h~~~v 1020 (1071)
.. |. ... ..+...+-+.-..+...+.+-.+++-|.-...+.. + .+++. ...|
T Consensus 289 ~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei-~tgI 367 (404)
T KOG1409|consen 289 NQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIPHEI-KTGI 367 (404)
T ss_pred CchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCccccccccceeEEEEecccchhhhcCCCCcccccccc-ccce
Confidence 00 00 000 01111111212222222444456665541111111 1 11222 4579
Q ss_pred eEEEEecCCcEEEEEeCCCeEEEEEcCC
Q 001477 1021 SSAIYSCDGLLVYAGFCDGAIGVFDAET 1048 (1071)
Q Consensus 1021 ~~~~~s~dg~~l~t~~~Dg~i~vwd~~~ 1048 (1071)
+.|.+-.+-.+|+|++.|..|+|||+..
T Consensus 368 tamhlqetlglLvTsG~~Rvi~iwd~~~ 395 (404)
T KOG1409|consen 368 TAMHLQETLGLLVTSGTDRVIKIWDVRS 395 (404)
T ss_pred eEEEhhhhccceeecCCceEEEEEechh
Confidence 9999988988999999999999999864
No 247
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.44 E-value=2.1e-10 Score=115.12 Aligned_cols=281 Identities=12% Similarity=0.126 Sum_probs=184.9
Q ss_pred cCccceeccCCCCCcccceeeecCCCcCCCceEEEEEecccchhhhcccc---ceeEEEecccccCCCCCccceeeccee
Q 001477 744 VDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASN---AVHKLWKWQRTERNPSGKATANVAPQL 820 (1071)
Q Consensus 744 ~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~~~~~d---g~v~vw~~~~~~~~~~g~~~~~~~~~~ 820 (1071)
++.|.+|++++........ .+ ....+.++-++++|+++.|.++..+ |.+.-|.+
T Consensus 15 s~gI~v~~ld~~~g~l~~~--~~--v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~i------------------- 71 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLL--QL--VAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRI------------------- 71 (346)
T ss_pred CCceEEEEEeCcccccchh--hh--ccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEE-------------------
Confidence 5778999998432221111 11 1255678889999999998887664 55555543
Q ss_pred ccCCCCCccccc-cCCCCCCCCCeEEEEEecCCcEEEEEe--CCeEEEEECCC-CeEEEE--EeCCCCC----------e
Q 001477 821 WQPPSGTLMTND-INESKPTEESAACIALSKNDSYVMSAS--GGKVSLFNMMT-FKVMTM--FMSPPPA----------A 884 (1071)
Q Consensus 821 ~~~~~~~~~~~~-~~~~~h~~~~v~~v~~s~d~~~la~~~--dg~i~vwd~~~-~~~~~~--~~~~~~~----------i 884 (1071)
|..+|++.... ... . ..+...++++++|++|++++ .|.|.++-++. |.+... +..|.+. +
T Consensus 72 -D~~~G~Lt~ln~~~~--~-g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~ 147 (346)
T COG2706 72 -DPDDGRLTFLNRQTL--P-GSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHV 147 (346)
T ss_pred -cCCCCeEEEeecccc--C-CCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCcc
Confidence 33334322110 011 1 23348899999999999998 69999999965 433222 2234444 8
Q ss_pred EEEEEcCCCCCEEEEEeC-CCeEEEEEccCCeEEE----EecCcCCCeeEEEEcCCCCEEEEEe-CCCcEEEEECCCC--
Q 001477 885 TFLAFHPQDNNIIAIGME-DSSVQIYNVRVDEVKT----KLKGHQNRITGLAFSPTLNALVSSG-ADAQLCMWSIDKW-- 956 (1071)
Q Consensus 885 ~~l~~sp~~~~~la~g~~-dg~v~vwd~~~~~~~~----~l~~h~~~v~~l~~s~d~~~l~s~~-~d~~v~vWd~~~~-- 956 (1071)
....|.| ++++|++.+- --+|.+|++..|++.. .++ -...-+.|+|+|++++..... -+++|.+|.....
T Consensus 148 H~a~~tP-~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~-~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g 225 (346)
T COG2706 148 HSANFTP-DGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVK-PGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVG 225 (346)
T ss_pred ceeeeCC-CCCEEEEeecCCceEEEEEcccCccccccccccC-CCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCc
Confidence 8999999 8888887642 2379999999886432 222 334568999999999988777 5889999999883
Q ss_pred ceeeeeeecCCCCCCCCCCCceEEEEccCCCEEEEEEC--CeEEEEeC--CCCceeecCCCCCCCCCeeEEEEecCCcEE
Q 001477 957 EKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHE--SQISVYDS--KLECSRSWSPKDALPAPISSAIYSCDGLLV 1032 (1071)
Q Consensus 957 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d--~~i~vwd~--~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l 1032 (1071)
+......+......-........+..++||++|.+++. ..|.+|.+ .+..+........+........|+++|++|
T Consensus 226 ~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~L 305 (346)
T COG2706 226 KFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFL 305 (346)
T ss_pred eEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEE
Confidence 32222222221111111245678899999999999853 48889998 445454443333345557899999999999
Q ss_pred EEEeCCC-eEEEEEc--CCCeEEE
Q 001477 1033 YAGFCDG-AIGVFDA--ETLRFRC 1053 (1071)
Q Consensus 1033 ~t~~~Dg-~i~vwd~--~~~~~~~ 1053 (1071)
+++..|+ .|.+|.+ ++|++-.
T Consensus 306 iaa~q~sd~i~vf~~d~~TG~L~~ 329 (346)
T COG2706 306 IAANQKSDNITVFERDKETGRLTL 329 (346)
T ss_pred EEEccCCCcEEEEEEcCCCceEEe
Confidence 9988765 4888877 5565543
No 248
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.43 E-value=1.2e-11 Score=121.51 Aligned_cols=154 Identities=17% Similarity=0.248 Sum_probs=109.6
Q ss_pred eEEEEEecCCcEEEEEe----C-------CeEEEEECCC-CeEEEEEeC-CCCCeEEEEEcCCCCCEEEE--EeCCCeEE
Q 001477 843 AACIALSKNDSYVMSAS----G-------GKVSLFNMMT-FKVMTMFMS-PPPAATFLAFHPQDNNIIAI--GMEDSSVQ 907 (1071)
Q Consensus 843 v~~v~~s~d~~~la~~~----d-------g~i~vwd~~~-~~~~~~~~~-~~~~i~~l~~sp~~~~~la~--g~~dg~v~ 907 (1071)
-..+.|+|+|.+|++-. | |...+|.++. ......+.- ..++|.+++|+| +++.+|+ |..++.|.
T Consensus 8 ~~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP-~g~~favi~g~~~~~v~ 86 (194)
T PF08662_consen 8 DAKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSP-NGNEFAVIYGSMPAKVT 86 (194)
T ss_pred eEEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECc-CCCEEEEEEccCCcccE
Confidence 34678899998876542 1 2344554422 223333332 445799999999 6766544 44678999
Q ss_pred EEEccCCeEEEEecCcCCCeeEEEEcCCCCEEEEEeCC---CcEEEEECCCCceeeeeeecCCCCCCCCCCCceEEEEcc
Q 001477 908 IYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGAD---AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHN 984 (1071)
Q Consensus 908 vwd~~~~~~~~~l~~h~~~v~~l~~s~d~~~l~s~~~d---~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 984 (1071)
+||++ ++.+..+. ...+..+.|||+|++|+++|.+ |.|.+||+++.+.+.. ... ..++.++|||
T Consensus 87 lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~-----~~~-----~~~t~~~WsP 153 (194)
T PF08662_consen 87 LYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKIST-----FEH-----SDATDVEWSP 153 (194)
T ss_pred EEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeec-----ccc-----CcEEEEEEcC
Confidence 99997 66666664 4567899999999999998854 6699999998665432 111 3468999999
Q ss_pred CCCEEEEEE-------CCeEEEEeCCCCceeec
Q 001477 985 DQTHLLVVH-------ESQISVYDSKLECSRSW 1010 (1071)
Q Consensus 985 dg~~l~~~~-------d~~i~vwd~~~~~~~~~ 1010 (1071)
||++++++. |+.++||+..++.+...
T Consensus 154 dGr~~~ta~t~~r~~~dng~~Iw~~~G~~l~~~ 186 (194)
T PF08662_consen 154 DGRYLATATTSPRLRVDNGFKIWSFQGRLLYKK 186 (194)
T ss_pred CCCEEEEEEeccceeccccEEEEEecCeEeEec
Confidence 999999842 78999999988876554
No 249
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.43 E-value=9.6e-12 Score=130.34 Aligned_cols=275 Identities=13% Similarity=0.192 Sum_probs=200.7
Q ss_pred CCCccccccccccccccc--CccceeccCCCCCcccceeeecCCCcCCCceEEEEEecccchhhhccccceeEEEecccc
Q 001477 727 TIDGSRLVDVKPRVAEDV--DKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRT 804 (1071)
Q Consensus 727 ~~~~~~~~~~~~~~~~~~--~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~~~~~dg~v~vw~~~~~ 804 (1071)
......++||+++.+.+- ..|++||+.... +.+..+.....|.-...+.|-..++....|.+|.+..
T Consensus 54 st~ik~s~DGqY~lAtG~YKP~ikvydlanLS-------LKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHa---- 122 (703)
T KOG2321|consen 54 STRIKVSPDGQYLLATGTYKPQIKVYDLANLS-------LKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHA---- 122 (703)
T ss_pred cceeEecCCCcEEEEecccCCceEEEEcccce-------eeeeecccccceeEEEeccchhhheEeecCceeeehh----
Confidence 345577899999888775 889999998532 2222222344555556667777777777787776632
Q ss_pred cCCCCCccceeecceeccCCCCCccccccCCCCCCCCCeEEEEEe-cCCcEEEEEeCCeEEEEECCCCeEEEEEeCCCCC
Q 001477 805 ERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALS-KNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPA 883 (1071)
Q Consensus 805 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~v~~s-~d~~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~ 883 (1071)
.-|.-....+ +..-..++++ |...++.+|+...|+-++++.|.-+..+....+.
T Consensus 123 -------------------k~G~hy~~RI------P~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~ 177 (703)
T KOG2321|consen 123 -------------------KYGRHYRTRI------PKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGE 177 (703)
T ss_pred -------------------hcCeeeeeec------CcCCccccccCCCccEEEeecCcceEEEEcccccccccccccccc
Confidence 2222211111 2223445554 3445666666788999999999999999988899
Q ss_pred eEEEEEcCCCCCEEEEEeCCCeEEEEEccCCeEEEEec------CcCC-----CeeEEEEcCCCCEEEEEeCCCcEEEEE
Q 001477 884 ATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLK------GHQN-----RITGLAFSPTLNALVSSGADAQLCMWS 952 (1071)
Q Consensus 884 i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~l~------~h~~-----~v~~l~~s~d~~~l~s~~~d~~v~vWd 952 (1071)
++++..++ -..+|++|+.+|.|..||..+...+..+. .|.+ .|+++.|+.||-.++.|..+|.+.|||
T Consensus 178 lN~v~in~-~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyD 256 (703)
T KOG2321|consen 178 LNVVSINE-EHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYD 256 (703)
T ss_pred ceeeeecC-ccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEE
Confidence 99999999 88899999999999999998876655543 2333 399999999999999999999999999
Q ss_pred CCCCceeeeeeecCCCCCCCCCCCceEEEEccC--CCEEEEEECCeEEEEeC-CCCceeecCCCCCCCCCeeEEEEecCC
Q 001477 953 IDKWEKLKSRFIQAPAGRQSPLVGETKVQFHND--QTHLLVVHESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDG 1029 (1071)
Q Consensus 953 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d--g~~l~~~~d~~i~vwd~-~~~~~~~~~~~~~h~~~v~~~~~s~dg 1029 (1071)
+.+.+.+. ..-.+.. .+|..+.|.+. +..+++.+...++|||- +++....+.+ ...+..+|+-|++
T Consensus 257 LRa~~pl~----~kdh~~e---~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEp----t~~lND~C~~p~s 325 (703)
T KOG2321|consen 257 LRASKPLL----VKDHGYE---LPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEP----TSDLNDFCFVPGS 325 (703)
T ss_pred cccCCcee----ecccCCc---cceeeecccccCCCceEEecchHHhhhcccccCCceeeccc----cCCcCceeeecCC
Confidence 99976542 2222222 56888999665 55677777889999999 7777777665 4459999999999
Q ss_pred cEEEEEeCCCeEEEEEcCCC
Q 001477 1030 LLVYAGFCDGAIGVFDAETL 1049 (1071)
Q Consensus 1030 ~~l~t~~~Dg~i~vwd~~~~ 1049 (1071)
-+++++-.++.+..|=++..
T Consensus 326 Gm~f~Ane~~~m~~yyiP~L 345 (703)
T KOG2321|consen 326 GMFFTANESSKMHTYYIPSL 345 (703)
T ss_pred ceEEEecCCCcceeEEcccc
Confidence 99999998887776655543
No 250
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.42 E-value=1.2e-09 Score=112.11 Aligned_cols=171 Identities=18% Similarity=0.166 Sum_probs=133.2
Q ss_pred CCcEEEEEeCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCCEEEEEeCCC-eEEEEEccCCeEEEEecCcCCCeeE
Q 001477 851 NDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDS-SVQIYNVRVDEVKTKLKGHQNRITG 929 (1071)
Q Consensus 851 d~~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg-~v~vwd~~~~~~~~~l~~h~~~v~~ 929 (1071)
+|.++|..+.|+..|.+.-.+-.+. -++.+.|.-..+.- ++.-++.|..|| .+-|||..+++ ++.+...-+.|.+
T Consensus 331 ~Gd~ia~VSRGkaFi~~~~~~~~iq--v~~~~~VrY~r~~~-~~e~~vigt~dgD~l~iyd~~~~e-~kr~e~~lg~I~a 406 (668)
T COG4946 331 NGDYIALVSRGKAFIMRPWDGYSIQ--VGKKGGVRYRRIQV-DPEGDVIGTNDGDKLGIYDKDGGE-VKRIEKDLGNIEA 406 (668)
T ss_pred CCcEEEEEecCcEEEECCCCCeeEE--cCCCCceEEEEEcc-CCcceEEeccCCceEEEEecCCce-EEEeeCCccceEE
Confidence 7889999999998888865554332 34677788888887 677889999999 99999999887 4566667788999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeecCCCCCCCCCCCceEEEEccCCCEEEEEE-----CCeEEEEeCCC
Q 001477 930 LAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVH-----ESQISVYDSKL 1004 (1071)
Q Consensus 930 l~~s~d~~~l~s~~~d~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-----d~~i~vwd~~~ 1004 (1071)
+..++||++++.+.....+.+.|++++.... +...+- +-|+..+|+|+++++|-+- -..|++||+.+
T Consensus 407 v~vs~dGK~~vvaNdr~el~vididngnv~~---idkS~~-----~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~ 478 (668)
T COG4946 407 VKVSPDGKKVVVANDRFELWVIDIDNGNVRL---IDKSEY-----GLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDG 478 (668)
T ss_pred EEEcCCCcEEEEEcCceEEEEEEecCCCeeE---eccccc-----ceeEEEEEcCCceeEEEecCcceeeeeEEEEecCC
Confidence 9999999999999888899999999988442 221111 5689999999999999862 45899999966
Q ss_pred CceeecCCCCCCCCCeeEEEEecCCcEEEEEe
Q 001477 1005 ECSRSWSPKDALPAPISSAIYSCDGLLVYAGF 1036 (1071)
Q Consensus 1005 ~~~~~~~~~~~h~~~v~~~~~s~dg~~l~t~~ 1036 (1071)
..+-..... .+.=.+-+|.|||++|.--+
T Consensus 479 ~Kiy~vTT~---ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 479 GKIYDVTTP---TAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred CeEEEecCC---cccccCcccCCCCcEEEEEe
Confidence 655554443 34445779999999887544
No 251
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.42 E-value=1.4e-10 Score=120.51 Aligned_cols=316 Identities=10% Similarity=0.065 Sum_probs=209.7
Q ss_pred cCCcceeeccCCCCCCccc------cCCccceeeEEeecCCCCeEEEEeecCCCeEEEEEcCCC---------------e
Q 001477 312 TGQSDEVSFAGVAHTPNVY------SQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVG---------------D 370 (1071)
Q Consensus 312 ~~~~~~v~~s~~~~~~~~~------~~d~~~~~~~~~~~h~~~V~~~~fsp~g~~lla~gs~dg---------------~ 370 (1071)
...+..+.+||.|..++.. .+++.....+..+.|. .|..+.|||.++ +|.+=+..+ .
T Consensus 32 ~~p~~~~~~SP~G~~l~~~~~~~V~~~~g~~~~~l~~~~~~-~V~~~~fSP~~k-YL~tw~~~pi~~pe~e~sp~~~~n~ 109 (561)
T COG5354 32 NWPVAYVSESPLGTYLFSEHAAGVECWGGPSKAKLVRFRHP-DVKYLDFSPNEK-YLVTWSREPIIEPEIEISPFTSKNN 109 (561)
T ss_pred CcchhheeecCcchheehhhccceEEccccchhheeeeecC-CceecccCcccc-eeeeeccCCccChhhccCCccccCc
Confidence 3456668899999887654 3344444455566665 899999999998 677644332 4
Q ss_pred EEEEecCCCcccccccceeecccccccchhhhhcccCCCC--ee-EEEECCCCCEEEEEeCCCeEEEEEecCCCccceee
Q 001477 371 ISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAIS--VN-RCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHL 447 (1071)
Q Consensus 371 i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~--v~-~~~~spd~~~la~~~~dg~i~iwd~~~~~~~~~~~ 447 (1071)
+.+||..+|..+... .+...+ .+ -+.||-|.+++|-- ....++|+++...-.....+
T Consensus 110 ~~vwd~~sg~iv~sf-------------------~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~t~n~~~~p~~ 169 (561)
T COG5354 110 VFVWDIASGMIVFSF-------------------NGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEITDNIEEHPFK 169 (561)
T ss_pred eeEEeccCceeEeec-------------------cccCCcccccceeeeeecchhhhhh-ccCeEEEEecCCccccCchh
Confidence 888998888776542 222222 44 67899999887766 34569999983322222222
Q ss_pred EeecccCCEEEEEEecCCCceEEEE-----EeCCCcEEEEEccCCceeEEecCCCCCeEEEEecccCCccEEEEEe----
Q 001477 448 EIDAHVGGVNDIAFAHPNKQLCIVT-----CGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA---- 518 (1071)
Q Consensus 448 ~~~~h~~~v~~~~~s~d~~~~~l~s-----~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~---- 518 (1071)
.+. ...|....|+|.++...|+. .+.++++++|.+..+..+.+-.-....=..+.|++.+ ++++.-.
T Consensus 170 ~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g--~~ll~l~~t~~ 245 (561)
T COG5354 170 NLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLG--KYLLVLVMTHT 245 (561)
T ss_pred hcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCC--ceEEEEEEEee
Confidence 221 35688999999865434443 4678899999998777665433233333456666654 4443321
Q ss_pred -------cCCeEEEEEcCCCceeEEecCCCCcEEEEEEccCCCEEEEeccCCCCCCeEEEEeCCCCceeEEeecccccce
Q 001477 519 -------IDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSL 591 (1071)
Q Consensus 519 -------~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~v 591 (1071)
....+.++++......... ...++|...+|.|.++.+++++. -....+.++|++.. ....+... .-
T Consensus 246 ksnKsyfgesnLyl~~~~e~~i~V~~-~~~~pVhdf~W~p~S~~F~vi~g--~~pa~~s~~~lr~N-l~~~~Pe~---~r 318 (561)
T COG5354 246 KSNKSYFGESNLYLLRITERSIPVEK-DLKDPVHDFTWEPLSSRFAVISG--YMPASVSVFDLRGN-LRFYFPEQ---KR 318 (561)
T ss_pred ecccceeccceEEEEeecccccceec-cccccceeeeecccCCceeEEec--ccccceeecccccc-eEEecCCc---cc
Confidence 1245777777744433333 55779999999999998887652 24667889998855 44443333 33
Q ss_pred eEEEEeCCCCEEEEEeC---CCcEEEEeCCCCceeE-EEecCCCCCCcceEEEcCCCCEEEEEeC------CCcEEEEEc
Q 001477 592 GVVQFDTTRNRFLAAGD---EFQIKFWDMDNMNMLT-TVDADGGLPASPRLRFNKEGSLLAVTTS------DNGIKILAN 661 (1071)
Q Consensus 592 ~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~------dg~v~iw~~ 661 (1071)
+.+.|+|.+++++.++- .|.+.+||........ .+.+. ...-+.|+||++++.+... |..+.||++
T Consensus 319 NT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~----n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v 394 (561)
T COG5354 319 NTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL----NTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDV 394 (561)
T ss_pred ccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecC----CceEeeccCCceEEEecCCCcccccCcceEEEEe
Confidence 56779999999999774 4789999998755444 55543 3466789999998887754 788999998
Q ss_pred CCh
Q 001477 662 SDG 664 (1071)
Q Consensus 662 ~~~ 664 (1071)
...
T Consensus 395 ~g~ 397 (561)
T COG5354 395 YGA 397 (561)
T ss_pred cCc
Confidence 765
No 252
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.41 E-value=4.3e-11 Score=120.15 Aligned_cols=245 Identities=10% Similarity=0.132 Sum_probs=181.7
Q ss_pred CCCCeeEEEECCCCC--EEEEEeCCCeEEEEEecCCCcccee---eEeecccCCEEEEEEecCCCceEEEEEeCCCcEEE
Q 001477 407 AAISVNRCVWGPDGL--MLGVAFSKHIVHLYTYNPTGELRQH---LEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKV 481 (1071)
Q Consensus 407 h~~~v~~~~~spd~~--~la~~~~dg~i~iwd~~~~~~~~~~---~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~i 481 (1071)
....|+.++|.-|++ .+...+.+..+....+......... .......++|..++.. || .|++|-.+|.+.+
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~-dg---~Litc~~sG~l~~ 129 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA-DG---TLITCVSSGNLQV 129 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc-CC---EEEEEecCCcEEE
Confidence 455788888887665 4544556666777776665443321 1223445677777664 34 5889999999999
Q ss_pred EEccCCc----eeEEecCCCCCeEEEEecccCCccEEEEEecC--CeEEEEEcCCCceeEEecCCC---------CcEEE
Q 001477 482 WDVVAGR----KQYTFEGHEAPVYSVCPHHKESIQFIFSTAID--GKIKAWLYDYLGSRVDYDAPG---------NWCTM 546 (1071)
Q Consensus 482 wd~~~~~----~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d--~~i~vwd~~~~~~~~~~~~~~---------~~i~~ 546 (1071)
|....+. .+..+..+ ..+..+.-++. ...++++|+.. ..+.+||+...+.++.-+... -+++.
T Consensus 130 ~~~k~~d~hss~l~~la~g-~g~~~~r~~~~-~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~td 207 (412)
T KOG3881|consen 130 RHDKSGDLHSSKLIKLATG-PGLYDVRQTDT-DPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITD 207 (412)
T ss_pred EeccCCccccccceeeecC-CceeeeccCCC-CCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeecc
Confidence 9987443 23333322 44555555543 33678889999 889999999886655433221 26788
Q ss_pred EEEccC--CCEEEEeccCCCCCCeEEEEeCCCCc-eeEEeecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCCcee
Q 001477 547 MAYSAD--GTRLFSCGTSKEGESHLVEWNESEGA-IKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNML 623 (1071)
Q Consensus 547 ~~~s~~--~~~l~~~~~~~d~~~~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 623 (1071)
+.|-+. ...+++++. -+++++||.+.++ ++..|..... ++.++...|+++++++|..-|.+..||.+.++..
T Consensus 208 i~Fl~g~~~~~fat~T~----~hqvR~YDt~~qRRPV~~fd~~E~-~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~ 282 (412)
T KOG3881|consen 208 IRFLEGSPNYKFATITR----YHQVRLYDTRHQRRPVAQFDFLEN-PISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLL 282 (412)
T ss_pred ceecCCCCCceEEEEec----ceeEEEecCcccCcceeEeccccC-cceeeeecCCCcEEEEecccchhheecccCceee
Confidence 899887 788898874 7889999998654 6677776655 8999999999999999999999999999999888
Q ss_pred EE-EecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCh
Q 001477 624 TT-VDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1071)
Q Consensus 624 ~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~ 664 (1071)
.. +.+.. +.+.++..+|.+.++++++-|+.|||+|+.+.
T Consensus 283 g~~~kg~t--Gsirsih~hp~~~~las~GLDRyvRIhD~ktr 322 (412)
T KOG3881|consen 283 GCGLKGIT--GSIRSIHCHPTHPVLASCGLDRYVRIHDIKTR 322 (412)
T ss_pred ccccCCcc--CCcceEEEcCCCceEEeeccceeEEEeecccc
Confidence 77 55443 47899999999999999999999999999986
No 253
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.41 E-value=1.2e-10 Score=114.65 Aligned_cols=193 Identities=16% Similarity=0.279 Sum_probs=123.2
Q ss_pred cCCEEEEEEecCCCceEEEEEeCCCcEEEEEccCCc-----eeEEecCCC------------CCeEEEEecccCCccEEE
Q 001477 453 VGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR-----KQYTFEGHE------------APVYSVCPHHKESIQFIF 515 (1071)
Q Consensus 453 ~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~-----~~~~~~~h~------------~~v~~i~~~~~~~~~~l~ 515 (1071)
..-|.++.|...|. +|+||..+|.|.++.-.... ....++.|. ..|+.+.|.+.++...++
T Consensus 25 adiis~vef~~~Ge--~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FL 102 (433)
T KOG1354|consen 25 ADIISAVEFDHYGE--RLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFL 102 (433)
T ss_pred hcceeeEEeecccc--eEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEE
Confidence 34688999999999 89999999999999643221 223444443 457888999988888999
Q ss_pred EEecCCeEEEEEcCCCceeE-----EecCCCCcEEEEEEccCCCEEEEeccCCCCCCeEEEEeCCCCceeEEeecccccc
Q 001477 516 STAIDGKIKAWLYDYLGSRV-----DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRS 590 (1071)
Q Consensus 516 s~~~d~~i~vwd~~~~~~~~-----~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~ 590 (1071)
..+.|.+|++|-+....... ........++++..- +.+.. +- +. ...+.+.+...+.-.
T Consensus 103 lstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p------~~~~~----~~-~v-----ea~prRv~aNaHtyh 166 (433)
T KOG1354|consen 103 LSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLP------VEGRH----DL-EV-----EASPRRVYANAHTYH 166 (433)
T ss_pred EecCCcceeeeeeeccccccccccccccCCCCccceeece------eeccc----cc-ee-----eeeeeeeccccceeE
Confidence 99999999999887554433 111111122222210 00000 00 00 112333444333337
Q ss_pred eeEEEEeCCCCEEEEEeCCCcEEEEeCCCCc-eeEEEecCCC-----CCCcceEEEcC-CCCEEEEEeCCCcEEEEEcCC
Q 001477 591 LGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN-MLTTVDADGG-----LPASPRLRFNK-EGSLLAVTTSDNGIKILANSD 663 (1071)
Q Consensus 591 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~-----~~~v~~~~~s~-~~~~l~~~~~dg~v~iw~~~~ 663 (1071)
|++++++.|+..++++ +|=.|.+|+++--. .......... ..-|++..|+| ..++++..+..|+|++-|++.
T Consensus 167 iNSIS~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~ 245 (433)
T KOG1354|consen 167 INSISVNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQ 245 (433)
T ss_pred eeeeeecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechh
Confidence 8999999999988887 56789999987432 2222222111 12467888999 456888888999999999864
Q ss_pred h
Q 001477 664 G 664 (1071)
Q Consensus 664 ~ 664 (1071)
.
T Consensus 246 ~ 246 (433)
T KOG1354|consen 246 S 246 (433)
T ss_pred h
Confidence 4
No 254
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.40 E-value=6.5e-11 Score=132.50 Aligned_cols=246 Identities=9% Similarity=0.033 Sum_probs=151.5
Q ss_pred CccccCCccceeeEEeecCCCCeEEEEeecCCCe--EEEEEcCCC--eEEEEecCCCcccccccceeecccccccchhhh
Q 001477 327 PNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQT--ILLVGTNVG--DISLWEVGSRERLAHKPFKVWDISAASMPLQNA 402 (1071)
Q Consensus 327 ~~~~~~d~~~~~~~~~~~h~~~V~~~~fsp~g~~--lla~gs~dg--~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~ 402 (1071)
-.+|..|....+..+.......+..-+|||||+. ++++...+| .|.+.++.+++...
T Consensus 165 ~~l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~------------------- 225 (428)
T PRK01029 165 GELWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK------------------- 225 (428)
T ss_pred ceEEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-------------------
Confidence 3556655555555555556667788999999975 333555444 57777887765432
Q ss_pred hcccCCCCeeEEEECCCCCEEEEEeC-----CCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEE-eCC
Q 001477 403 LLNDAAISVNRCVWGPDGLMLGVAFS-----KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTC-GDD 476 (1071)
Q Consensus 403 ~~~~h~~~v~~~~~spd~~~la~~~~-----dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~-~~d 476 (1071)
+....+.....+|||||+.||..+. +-.+.+|++.++..-.......++.+.....+|+|||+. |+.. ..+
T Consensus 226 -lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~--Laf~s~~~ 302 (428)
T PRK01029 226 -ILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTR--LVFVSNKD 302 (428)
T ss_pred -eecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCE--EEEEECCC
Confidence 2233444567899999999987653 223445777653211111122223334567899999994 4444 346
Q ss_pred CcEEEE--EccC-CceeEEecCCCCCeEEEEecccCCccEEEEEecC---CeEEEEEcCCCceeEEecCCCCcEEEEEEc
Q 001477 477 KMIKVW--DVVA-GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAID---GKIKAWLYDYLGSRVDYDAPGNWCTMMAYS 550 (1071)
Q Consensus 477 ~~i~iw--d~~~-~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d---~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s 550 (1071)
+...+| ++.. +.....+..+...+....|+|++ +.|+..+.+ ..|.+||+.+++...... ....+....|+
T Consensus 303 g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG--~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~-~~~~~~~p~wS 379 (428)
T PRK01029 303 GRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDG--KKIAFCSVIKGVRQICVYDLATGRDYQLTT-SPENKESPSWA 379 (428)
T ss_pred CCceEEEEECcccccceEEeccCCCCccceeECCCC--CEEEEEEcCCCCcEEEEEECCCCCeEEccC-CCCCccceEEC
Confidence 655555 4432 33344455555667788999865 666665443 468999998776544332 23456788999
Q ss_pred cCCCEEEEeccCCCCCCeEEEEeCCCCceeEEeecccccceeEEEEeCCC
Q 001477 551 ADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR 600 (1071)
Q Consensus 551 ~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 600 (1071)
|||+.|+..+.. .+...|+++|+.+++....... .. .+...+|+|..
T Consensus 380 pDG~~L~f~~~~-~g~~~L~~vdl~~g~~~~Lt~~-~g-~~~~p~Ws~~~ 426 (428)
T PRK01029 380 IDSLHLVYSAGN-SNESELYLISLITKKTRKIVIG-SG-EKRFPSWGAFP 426 (428)
T ss_pred CCCCEEEEEECC-CCCceEEEEECCCCCEEEeecC-CC-cccCceecCCC
Confidence 999998865532 3467799999987775544432 22 45667787753
No 255
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.38 E-value=1.3e-10 Score=121.41 Aligned_cols=320 Identities=11% Similarity=0.166 Sum_probs=209.5
Q ss_pred CCcceeeccCCCCCCccc------cCCccceeeEEeecCCCCeEEEEeecCCCeEEEEEc-----------CCCeEEEEe
Q 001477 313 GQSDEVSFAGVAHTPNVY------SQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGT-----------NVGDISLWE 375 (1071)
Q Consensus 313 ~~~~~v~~s~~~~~~~~~------~~d~~~~~~~~~~~h~~~V~~~~fsp~g~~lla~gs-----------~dg~i~iwd 375 (1071)
....-|.|||.|.++..+ .|.+.....++.+.|. .|.-+.|||..+ +|++=+ ....++|||
T Consensus 211 WTetyv~wSP~GTYL~t~Hk~GI~lWGG~~f~r~~RF~Hp-~Vq~idfSP~Ek-YLVT~s~~p~~~~~~d~e~~~l~IWD 288 (698)
T KOG2314|consen 211 WTETYVRWSPKGTYLVTFHKQGIALWGGESFDRIQRFYHP-GVQFIDFSPNEK-YLVTYSPEPIIVEEDDNEGQQLIIWD 288 (698)
T ss_pred ceeeeEEecCCceEEEEEeccceeeecCccHHHHHhccCC-CceeeecCCccc-eEEEecCCccccCcccCCCceEEEEE
Confidence 355668899999887654 4455556666777776 799999999998 566532 124799999
Q ss_pred cCCCcccccccceeecccccccchhhhhcccCCCCeeEEEECCCCCEEEEEeCCCeEEEEEecCCCccceeeEeecccCC
Q 001477 376 VGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGG 455 (1071)
Q Consensus 376 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~ 455 (1071)
+.+|...+. |.+. .+....-.-..||.|++++|--.. ..|.||+..+-..+.. +.+ .-..
T Consensus 289 I~tG~lkrs--F~~~--------------~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~-Ksl--ki~g 348 (698)
T KOG2314|consen 289 IATGLLKRS--FPVI--------------KSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDK-KSL--KISG 348 (698)
T ss_pred ccccchhcc--eecc--------------CCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecc-ccc--CCcc
Confidence 999987753 2211 112222234689999999998766 4689999776433221 111 2356
Q ss_pred EEEEEEecCCCceEEEEEeC-----CCcEEEEEccCCceeEEecCCCCCeEEEEecccCCccEEEEE----------ecC
Q 001477 456 VNDIAFAHPNKQLCIVTCGD-----DKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFST----------AID 520 (1071)
Q Consensus 456 v~~~~~s~d~~~~~l~s~~~-----d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~----------~~d 520 (1071)
|....|+|.+. +||--.. -..+.+-.+.+++.+++-.-|. |..+..+...+|.+|+.- +.-
T Consensus 349 Ir~FswsP~~~--llAYwtpe~~~~parvtL~evPs~~~iRt~nlfn--VsDckLhWQk~gdyLcvkvdR~tK~~~~g~f 424 (698)
T KOG2314|consen 349 IRDFSWSPTSN--LLAYWTPETNNIPARVTLMEVPSKREIRTKNLFN--VSDCKLHWQKSGDYLCVKVDRHTKSKVKGQF 424 (698)
T ss_pred ccCcccCCCcc--eEEEEcccccCCcceEEEEecCccceeeecccee--eeccEEEeccCCcEEEEEEEeeccccccceE
Confidence 88999999987 6664332 2367777888887777655443 344444444555676643 222
Q ss_pred CeEEEEEcCCCceeEEecCCCCcEEEEEEccCCCEEEEeccCCCCCCeEEEEeCCC-C---ceeEEeecccccceeEEEE
Q 001477 521 GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE-G---AIKRTYSGFRKRSLGVVQF 596 (1071)
Q Consensus 521 ~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~-~---~~~~~~~~~~~~~v~~~~~ 596 (1071)
..+.++.++........-.-...|...+|-|.|+.+++.+.. +...++.+|.+.+ . +.+..+.. ...+.+.|
T Consensus 425 ~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~-~~k~tvsfY~~e~~~~~~~lVk~~dk---~~~N~vfw 500 (698)
T KOG2314|consen 425 SNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGN-TVKNTVSFYAVETNIKKPSLVKELDK---KFANTVFW 500 (698)
T ss_pred eeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEcc-ccccceeEEEeecCCCchhhhhhhcc---cccceEEE
Confidence 235566666554444333345578899999999988765532 3466788888773 2 23344433 25678999
Q ss_pred eCCCCEEEEE---eCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeC------CCcEEEEEcCCh
Q 001477 597 DTTRNRFLAA---GDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTS------DNGIKILANSDG 664 (1071)
Q Consensus 597 ~~~~~~l~~~---~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------dg~v~iw~~~~~ 664 (1071)
+|.|++++.+ |..|.+.++|........ .....| ...+.+.|.|.|+++++++. |..-++|+++..
T Consensus 501 sPkG~fvvva~l~s~~g~l~F~D~~~a~~k~-~~~~eh-~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqGr 575 (698)
T KOG2314|consen 501 SPKGRFVVVAALVSRRGDLEFYDTDYADLKD-TASPEH-FAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQGR 575 (698)
T ss_pred cCCCcEEEEEEecccccceEEEecchhhhhh-ccCccc-cccccceECCCCCEEEEeeehhhhccccceEEEEeecH
Confidence 9999998875 467899999988532222 222223 24588999999999999876 566788888755
No 256
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.38 E-value=2.5e-09 Score=107.53 Aligned_cols=300 Identities=12% Similarity=0.169 Sum_probs=189.4
Q ss_pred CCeEEEEEcCCCceeE---EecCCCCcEEEEEEccCCCEEEEeccCCCCCCeEEEEeCC--CCceeEE--eeccccccee
Q 001477 520 DGKIKAWLYDYLGSRV---DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES--EGAIKRT--YSGFRKRSLG 592 (1071)
Q Consensus 520 d~~i~vwd~~~~~~~~---~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~--~~~~~~~--~~~~~~~~v~ 592 (1071)
++.|.+|++++..... .........+-++|+|++++|.++..+++ ++.|.-|.+. +|+.... ...... +-+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~-~ggvaay~iD~~~G~Lt~ln~~~~~g~-~p~ 92 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGE-EGGVAAYRIDPDDGRLTFLNRQTLPGS-PPC 92 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCC-cCcEEEEEEcCCCCeEEEeeccccCCC-CCe
Confidence 5679999998544332 23344557888999999999998876432 5556655554 4554322 111122 336
Q ss_pred EEEEeCCCCEEEEEe-CCCcEEEEeCCC-CceeE---EEecCCC-------CCCcceEEEcCCCCEEEEEeC-CCcEEEE
Q 001477 593 VVQFDTTRNRFLAAG-DEFQIKFWDMDN-MNMLT---TVDADGG-------LPASPRLRFNKEGSLLAVTTS-DNGIKIL 659 (1071)
Q Consensus 593 ~~~~~~~~~~l~~~~-~dg~i~iwd~~~-~~~~~---~~~~~~~-------~~~v~~~~~s~~~~~l~~~~~-dg~v~iw 659 (1071)
.++++++|++++++. ..|.|.++.++. |.+.. .+...+. ...+....+.|++++|++..- --.|.+|
T Consensus 93 yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y 172 (346)
T COG2706 93 YVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLY 172 (346)
T ss_pred EEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEE
Confidence 799999999999977 568999999865 44332 2222111 123778899999998887653 2278889
Q ss_pred EcCChhhhhhhhcCCccccccCCCCCCCCCCccccccCCCCccccccCCCCCCCCCCCCcccccccCCCCcccccccccc
Q 001477 660 ANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPR 739 (1071)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 739 (1071)
++..+ .+...-..
T Consensus 173 ~~~dg-~L~~~~~~------------------------------------------------------------------ 185 (346)
T COG2706 173 DLDDG-KLTPADPA------------------------------------------------------------------ 185 (346)
T ss_pred EcccC-cccccccc------------------------------------------------------------------
Confidence 88765 11100000
Q ss_pred cccccCccceeccCCCCCcccceeeecCCCcCCCceEEEEEecccchhhhccc-cceeEEEecccccCCCCCccceeecc
Q 001477 740 VAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALAS-NAVHKLWKWQRTERNPSGKATANVAP 818 (1071)
Q Consensus 740 ~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~~~~~-dg~v~vw~~~~~~~~~~g~~~~~~~~ 818 (1071)
.+ . .....+.++|.|++++....++ +++|.+|.+... .|+..
T Consensus 186 -----------~v-------------~----~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~----~g~~~----- 228 (346)
T COG2706 186 -----------EV-------------K----PGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPA----VGKFE----- 228 (346)
T ss_pred -----------cc-------------C----CCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCC----CceEE-----
Confidence 00 0 1233467999999998877766 899999987642 11111
Q ss_pred eeccCCCCCccccccCCCCCCCCCeEEEEEecCCcEEEEEe--CCeEEEEECCC--CeEE--EEEeCCCCCeEEEEEcCC
Q 001477 819 QLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS--GGKVSLFNMMT--FKVM--TMFMSPPPAATFLAFHPQ 892 (1071)
Q Consensus 819 ~~~~~~~~~~~~~~~~~~~h~~~~v~~v~~s~d~~~la~~~--dg~i~vwd~~~--~~~~--~~~~~~~~~i~~l~~sp~ 892 (1071)
.+.+-..+...+.+ .....++.+++||++|.++. ...|.+|.+.. +++. .....+........|+|
T Consensus 229 ---~lQ~i~tlP~dF~g----~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~- 300 (346)
T COG2706 229 ---ELQTIDTLPEDFTG----TNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINP- 300 (346)
T ss_pred ---EeeeeccCccccCC----CCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCC-
Confidence 11222223334555 78899999999999999987 45788887764 3322 12222333468899999
Q ss_pred CCCEEEEEeCC-CeEEEEEcc--CCeEEEEec-CcCCCeeEEEEc
Q 001477 893 DNNIIAIGMED-SSVQIYNVR--VDEVKTKLK-GHQNRITGLAFS 933 (1071)
Q Consensus 893 ~~~~la~g~~d-g~v~vwd~~--~~~~~~~l~-~h~~~v~~l~~s 933 (1071)
++++|+++.++ ..|.+|..+ +|++..... .......||.|.
T Consensus 301 ~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 301 SGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL 345 (346)
T ss_pred CCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence 88888777765 478888765 566544333 344456677764
No 257
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.38 E-value=5.9e-11 Score=116.73 Aligned_cols=263 Identities=12% Similarity=0.145 Sum_probs=174.6
Q ss_pred CCCeEEEEeecCCCeEEEEEcCCCeEEEEecCCCcccccccceeeccc-ccccchhhhhcccCCCCeeEEEECCCCC--E
Q 001477 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDIS-AASMPLQNALLNDAAISVNRCVWGPDGL--M 422 (1071)
Q Consensus 346 ~~~V~~~~fsp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~-~~~~~~~~~~~~~h~~~v~~~~~spd~~--~ 422 (1071)
.+-|.++.|..+|. +||+|..+|.|.++.-..... . .+..+..- ...+.+.-..--.-...|..+.|.+++. .
T Consensus 25 adiis~vef~~~Ge-~LatGdkgGRVv~f~r~~~~~-~--ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~ 100 (433)
T KOG1354|consen 25 ADIISAVEFDHYGE-RLATGDKGGRVVLFEREKLYK-G--EYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAE 100 (433)
T ss_pred hcceeeEEeecccc-eEeecCCCCeEEEeecccccc-c--ceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccE
Confidence 45799999999998 799999999999997543221 0 11111000 0000000000012345789999999765 5
Q ss_pred EEEEeCCCeEEEEEecCCCccc------------------e--------------ee-EeecccCCEEEEEEecCCCceE
Q 001477 423 LGVAFSKHIVHLYTYNPTGELR------------------Q--------------HL-EIDAHVGGVNDIAFAHPNKQLC 469 (1071)
Q Consensus 423 la~~~~dg~i~iwd~~~~~~~~------------------~--------------~~-~~~~h~~~v~~~~~s~d~~~~~ 469 (1071)
+...+.|.+|++|.+....... . .. --.+|.--|+++.++.|++ .
T Consensus 101 FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~E--t 178 (433)
T KOG1354|consen 101 FLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKE--T 178 (433)
T ss_pred EEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccc--e
Confidence 5666799999999986432111 0 00 1125777899999999998 5
Q ss_pred EEEEeCCCcEEEEEccCCce---eEEecCC-----CCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCcee------E
Q 001477 470 IVTCGDDKMIKVWDVVAGRK---QYTFEGH-----EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR------V 535 (1071)
Q Consensus 470 l~s~~~d~~i~iwd~~~~~~---~~~~~~h-----~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~------~ 535 (1071)
++++ +|=.|.+|+++--.. +..++.+ +.-|++..|+|.. .+.++-.+..|+|++.|++..... .
T Consensus 179 ~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~-cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlf 256 (433)
T KOG1354|consen 179 FLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHH-CNVFVYSSSKGTIRLCDMRQSALCDAHSKLF 256 (433)
T ss_pred Eeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhH-ccEEEEecCCCcEEEeechhhhhhcchhhhh
Confidence 6655 478899999864322 2222222 3457888899874 478889999999999999843211 1
Q ss_pred Ee----------cCCCCcEEEEEEccCCCEEEEeccCCCCCCeEEEEeCC-CCceeEEeeccccc-----------c---
Q 001477 536 DY----------DAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES-EGAIKRTYSGFRKR-----------S--- 590 (1071)
Q Consensus 536 ~~----------~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~-~~~~~~~~~~~~~~-----------~--- 590 (1071)
.. ..--..|..+.|+++|+++++-. --+|.+||+. ..+++.+++.|..- .
T Consensus 257 Eepedp~~rsffseiIsSISDvKFs~sGryilsRD-----yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~Ifd 331 (433)
T KOG1354|consen 257 EEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD-----YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFD 331 (433)
T ss_pred ccccCCcchhhHHHHhhhhhceEEccCCcEEEEec-----cceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhh
Confidence 11 11123678899999999999864 3569999994 56777777666321 1
Q ss_pred eeEEEEeCCCCEEEEEeCCCcEEEEeCCCCc
Q 001477 591 LGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN 621 (1071)
Q Consensus 591 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 621 (1071)
-..++|+.++.++++|+.....++++...|.
T Consensus 332 KFec~~sg~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 332 KFECSWSGNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred eeEEEEcCCcceEecccccceEEEecCCCCc
Confidence 2348899999999999999999999966543
No 258
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.37 E-value=6.5e-11 Score=116.39 Aligned_cols=163 Identities=18% Similarity=0.323 Sum_probs=115.6
Q ss_pred eEEEECCCCCEEEEEeC----------CCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEE
Q 001477 412 NRCVWGPDGLMLGVAFS----------KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKV 481 (1071)
Q Consensus 412 ~~~~~spd~~~la~~~~----------dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~i 481 (1071)
..+.|+|+|++|++-.. -|...+|.++..........+ ...++|.+++|+|+|+.+.+++|..++.|.+
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l-~~~~~I~~~~WsP~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIEL-KKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeec-cCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence 46789999998776433 234667766443322222122 2345799999999999655566667889999
Q ss_pred EEccCCceeEEecCCCCCeEEEEecccCCccEEEEEec---CCeEEEEEcCCCceeEEecCCCCcEEEEEEccCCCEEEE
Q 001477 482 WDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI---DGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFS 558 (1071)
Q Consensus 482 wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~---d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 558 (1071)
||++ ++.+..+. ...++.+.|+|.+ +++++++. .|.|.+||.++.+.+.... ...+..++|+|||+++++
T Consensus 88 yd~~-~~~i~~~~--~~~~n~i~wsP~G--~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~--~~~~t~~~WsPdGr~~~t 160 (194)
T PF08662_consen 88 YDVK-GKKIFSFG--TQPRNTISWSPDG--RFLVLAGFGNLNGDLEFWDVRKKKKISTFE--HSDATDVEWSPDGRYLAT 160 (194)
T ss_pred EcCc-ccEeEeec--CCCceEEEECCCC--CEEEEEEccCCCcEEEEEECCCCEEeeccc--cCcEEEEEEcCCCCEEEE
Confidence 9986 77777764 5678899999865 88888875 4679999999666655443 335789999999999998
Q ss_pred eccC--CCCCCeEEEEeCCCCceeEEe
Q 001477 559 CGTS--KEGESHLVEWNESEGAIKRTY 583 (1071)
Q Consensus 559 ~~~~--~d~~~~i~iwd~~~~~~~~~~ 583 (1071)
++.. ...++.++||+.. |+.+...
T Consensus 161 a~t~~r~~~dng~~Iw~~~-G~~l~~~ 186 (194)
T PF08662_consen 161 ATTSPRLRVDNGFKIWSFQ-GRLLYKK 186 (194)
T ss_pred EEeccceeccccEEEEEec-CeEeEec
Confidence 8742 1235668999985 6655443
No 259
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.35 E-value=5.2e-10 Score=117.09 Aligned_cols=228 Identities=13% Similarity=0.145 Sum_probs=152.0
Q ss_pred CeeEEEECCCCCEEEEEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeC-----------CCc
Q 001477 410 SVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD-----------DKM 478 (1071)
Q Consensus 410 ~v~~~~~spd~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~-----------d~~ 478 (1071)
.-+.+.|||-|.||++--..| |.+|--.+-..++ .+ .|. .|.-+.|||..+ +|+|-+. ...
T Consensus 212 Tetyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~---RF-~Hp-~Vq~idfSP~Ek--YLVT~s~~p~~~~~~d~e~~~ 283 (698)
T KOG2314|consen 212 TETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQ---RF-YHP-GVQFIDFSPNEK--YLVTYSPEPIIVEEDDNEGQQ 283 (698)
T ss_pred eeeeEEecCCceEEEEEeccc-eeeecCccHHHHH---hc-cCC-CceeeecCCccc--eEEEecCCccccCcccCCCce
Confidence 356799999999999986666 8899765544443 33 465 589999999999 7888653 257
Q ss_pred EEEEEccCCceeEEecC--CCCCeEE-EEecccCCccEEEEEecCCeEEEEEcCCCceeEEecCCCCcEEEEEEccCCCE
Q 001477 479 IKVWDVVAGRKQYTFEG--HEAPVYS-VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTR 555 (1071)
Q Consensus 479 i~iwd~~~~~~~~~~~~--h~~~v~~-i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 555 (1071)
++|||+.+|...+.|.. ....++. ..|+.+ +++++.-.. ..|.+|+..+....-.-...-..|....|+|.++.
T Consensus 284 l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~D--dKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~l 360 (698)
T KOG2314|consen 284 LIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHD--DKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNL 360 (698)
T ss_pred EEEEEccccchhcceeccCCCccccceEEeccC--CceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcce
Confidence 99999999999888765 2333333 356654 478877666 67888977654333333334557889999999999
Q ss_pred EEEeccC-CCCCCeEEEEeCCCCceeEEeecccccceeEEEEeCCCCEEEEEe----------CCCcEEEEeCCCCc-ee
Q 001477 556 LFSCGTS-KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG----------DEFQIKFWDMDNMN-ML 623 (1071)
Q Consensus 556 l~~~~~~-~d~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~iwd~~~~~-~~ 623 (1071)
|+.-... .+-...+.+..+.+++.+++-..++- .=..+-|-.+|.+|+.-- .-..+.|+.++... ++
T Consensus 361 lAYwtpe~~~~parvtL~evPs~~~iRt~nlfnV-sDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpv 439 (698)
T KOG2314|consen 361 LAYWTPETNNIPARVTLMEVPSKREIRTKNLFNV-SDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPV 439 (698)
T ss_pred EEEEcccccCCcceEEEEecCccceeeeccceee-eccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCc
Confidence 8865432 12234577888888887776655542 122366777888877521 11235566655433 33
Q ss_pred EEEecCCCCCCcceEEEcCCCCEEEEEeC
Q 001477 624 TTVDADGGLPASPRLRFNKEGSLLAVTTS 652 (1071)
Q Consensus 624 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 652 (1071)
..+... ..|...+|-|.|..+++-+.
T Consensus 440 e~velk---e~vi~FaWEP~gdkF~vi~g 465 (698)
T KOG2314|consen 440 EVVELK---ESVIAFAWEPHGDKFAVISG 465 (698)
T ss_pred eeeecc---hheeeeeeccCCCeEEEEEc
Confidence 333332 36788999999988877654
No 260
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.35 E-value=1.4e-08 Score=107.40 Aligned_cols=212 Identities=15% Similarity=0.096 Sum_probs=129.2
Q ss_pred EEEEEecCCcEEEEEe---CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcc-CCeEE-E
Q 001477 844 ACIALSKNDSYVMSAS---GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVR-VDEVK-T 918 (1071)
Q Consensus 844 ~~v~~s~d~~~la~~~---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~-~~~~~-~ 918 (1071)
..++++|||+++.+.. +..|.+.|+.+++.+.++.-..+ ..-...++ +..++ -+.||......+. +|+.. .
T Consensus 108 ~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~-~~vy~t~e-~~~~~--~~~Dg~~~~v~~d~~g~~~~~ 183 (352)
T TIGR02658 108 WMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDC-YHIFPTAN-DTFFM--HCRDGSLAKVGYGTKGNPKIK 183 (352)
T ss_pred ceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCC-cEEEEecC-CccEE--EeecCceEEEEecCCCceEEe
Confidence 4578888998888775 57899999999998888875332 22222222 22221 2234444433332 22211 1
Q ss_pred ---EecCcCCCe-eEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeeeeeecCCCCC----CCCCCCceEEEEccCCCEE
Q 001477 919 ---KLKGHQNRI-TGLAFSP-TLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGR----QSPLVGETKVQFHNDQTHL 989 (1071)
Q Consensus 919 ---~l~~h~~~v-~~l~~s~-d~~~l~s~~~d~~v~vWd~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~s~dg~~l 989 (1071)
.+.+-..++ ..-.|++ ||+++..... |+|.+-|+...+............. .-.+....-++++|||+.+
T Consensus 184 ~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~l 262 (352)
T TIGR02658 184 PTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRI 262 (352)
T ss_pred eeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEE
Confidence 111100110 0014456 8888877666 9999999765443222222111100 0112455569999999998
Q ss_pred EEEE-----------CCeEEEEeC-CCCceeecCCCCCCCCCeeEEEEecCCc-EEEEEe-CCCeEEEEEcCCCeEEEEe
Q 001477 990 LVVH-----------ESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGL-LVYAGF-CDGAIGVFDAETLRFRCRI 1055 (1071)
Q Consensus 990 ~~~~-----------d~~i~vwd~-~~~~~~~~~~~~~h~~~v~~~~~s~dg~-~l~t~~-~Dg~i~vwd~~~~~~~~~~ 1055 (1071)
.+.. .+.|.++|. +.+.+..+.. ...+..++||||++ +|++.. .++.|.+.|+.+++.++++
T Consensus 263 yV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v----G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 263 YLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL----GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred EEEecCCccccccCCCCEEEEEECCCCeEEEEEeC----CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 8832 157999999 6666666554 45899999999999 777665 5788999999999999998
Q ss_pred CCCcccCcc
Q 001477 1056 GPSAYIPTY 1064 (1071)
Q Consensus 1056 ~~~~~~~~~ 1064 (1071)
..-...|..
T Consensus 339 ~~vg~~P~~ 347 (352)
T TIGR02658 339 NQLGRGPQV 347 (352)
T ss_pred ccCCCCCeE
Confidence 444444433
No 261
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.35 E-value=1.8e-10 Score=131.31 Aligned_cols=237 Identities=13% Similarity=0.093 Sum_probs=148.0
Q ss_pred cccCCccceeeEEeecCCCCeEEEEeecCCCeEEEEEcCC--CeEEEEecCCCcccccccceeecccccccchhhhhccc
Q 001477 329 VYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNV--GDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLND 406 (1071)
Q Consensus 329 ~~~~d~~~~~~~~~~~h~~~V~~~~fsp~g~~lla~gs~d--g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 406 (1071)
++..|.........+.+...+....|||||+.++++...+ ..|.+||+.+++... +..
T Consensus 181 l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~--------------------l~~ 240 (430)
T PRK00178 181 LQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ--------------------ITN 240 (430)
T ss_pred EEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE--------------------ccC
Confidence 4444544455555556778899999999998665555433 368889998875432 222
Q ss_pred CCCCeeEEEECCCCCEEEEE-eCCC--eEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCC--cEEE
Q 001477 407 AAISVNRCVWGPDGLMLGVA-FSKH--IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK--MIKV 481 (1071)
Q Consensus 407 h~~~v~~~~~spd~~~la~~-~~dg--~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~--~i~i 481 (1071)
..+.+...+|||||+.|+.. +.+| .|.+||+.++... .+..+........|+|||+. ++++...++ .|++
T Consensus 241 ~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~----~lt~~~~~~~~~~~spDg~~-i~f~s~~~g~~~iy~ 315 (430)
T PRK00178 241 FEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS----RVTNHPAIDTEPFWGKDGRT-LYFTSDRGGKPQIYK 315 (430)
T ss_pred CCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE----EcccCCCCcCCeEECCCCCE-EEEEECCCCCceEEE
Confidence 33345578999999988754 4444 6888899886532 34445556777899999995 233333333 5778
Q ss_pred EEccCCceeEEecCCCCCeEEEEecccCCccEEEEEec-CC--eEEEEEcCCCceeEEecCCCCcEEEEEEccCCCEEEE
Q 001477 482 WDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI-DG--KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFS 558 (1071)
Q Consensus 482 wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~-d~--~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 558 (1071)
+|+.+++..... ..........|+|++ +.++..+. ++ .|.+||+.+++....... .......|+|||+.++.
T Consensus 316 ~d~~~g~~~~lt-~~~~~~~~~~~Spdg--~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~--~~~~~p~~spdg~~i~~ 390 (430)
T PRK00178 316 VNVNGGRAERVT-FVGNYNARPRLSADG--KTLVMVHRQDGNFHVAAQDLQRGSVRILTDT--SLDESPSVAPNGTMLIY 390 (430)
T ss_pred EECCCCCEEEee-cCCCCccceEECCCC--CEEEEEEccCCceEEEEEECCCCCEEEccCC--CCCCCceECCCCCEEEE
Confidence 888777653322 122233456788765 66666554 33 478889887655432222 22235689999999987
Q ss_pred eccCCCCCCeEEEEeCCCCceeEEeecccccceeEEEEeC
Q 001477 559 CGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT 598 (1071)
Q Consensus 559 ~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 598 (1071)
.+.. .+...+.+++.. +.....+..... .+...+|+|
T Consensus 391 ~~~~-~g~~~l~~~~~~-g~~~~~l~~~~g-~~~~p~ws~ 427 (430)
T PRK00178 391 ATRQ-QGRGVLMLVSIN-GRVRLPLPTAQG-EVREPSWSP 427 (430)
T ss_pred EEec-CCceEEEEEECC-CCceEECcCCCC-CcCCCccCC
Confidence 7642 235568888875 444444443322 455666765
No 262
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.35 E-value=1.1e-07 Score=115.14 Aligned_cols=247 Identities=10% Similarity=0.138 Sum_probs=155.5
Q ss_pred CCeeEEEECCCCCEEEEEe--CCC--eEEEEEecCCCccceeeEee-----cccCCEEEEEEecCCCceEEEEEeCCCcE
Q 001477 409 ISVNRCVWGPDGLMLGVAF--SKH--IVHLYTYNPTGELRQHLEID-----AHVGGVNDIAFAHPNKQLCIVTCGDDKMI 479 (1071)
Q Consensus 409 ~~v~~~~~spd~~~la~~~--~dg--~i~iwd~~~~~~~~~~~~~~-----~h~~~v~~~~~s~d~~~~~l~s~~~d~~i 479 (1071)
..+...+|.+..+.+..+. ... .|.+..............+. .....|.++.|.++.. .++.+..+|.|
T Consensus 22 ~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~--~l~~~~~~Gdi 99 (928)
T PF04762_consen 22 LPITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSE--SLCIALASGDI 99 (928)
T ss_pred cccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCC--cEEEEECCceE
Confidence 3577778877665443332 222 34444444333222222332 2346799999999998 57778888989
Q ss_pred EEE----EccCCceeEEecCCCCCeEEEEecccCCccEEEEEecCCeEEEEEcC---------------C--------Cc
Q 001477 480 KVW----DVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD---------------Y--------LG 532 (1071)
Q Consensus 480 ~iw----d~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~---------------~--------~~ 532 (1071)
.+. |..+... .....-...|.+++|+|+. ..|+..+.++++.+-+-+ . ++
T Consensus 100 ~~~~~~~~~~~~~~-E~VG~vd~GI~a~~WSPD~--Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGk 176 (928)
T PF04762_consen 100 ILVREDPDPDEDEI-EIVGSVDSGILAASWSPDE--ELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGK 176 (928)
T ss_pred EEEEccCCCCCcee-EEEEEEcCcEEEEEECCCc--CEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCc
Confidence 888 5443332 2222346789999999976 788888888887765311 0 00
Q ss_pred eeEEecC------------------------CCCcEEEEEEccCCCEEEEeccCCC-C-CCeEEEEeCCCCceeEEeecc
Q 001477 533 SRVDYDA------------------------PGNWCTMMAYSADGTRLFSCGTSKE-G-ESHLVEWNESEGAIKRTYSGF 586 (1071)
Q Consensus 533 ~~~~~~~------------------------~~~~i~~~~~s~~~~~l~~~~~~~d-~-~~~i~iwd~~~~~~~~~~~~~ 586 (1071)
...++.+ ....-..++|-.||.++++.+.+.. + ...+++|+-+ |....+-+.-
T Consensus 177 KeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v 255 (928)
T PF04762_consen 177 KETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPV 255 (928)
T ss_pred ccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccC
Confidence 0001100 1224467899999999998775332 2 4789999965 6655444322
Q ss_pred cccceeEEEEeCCCCEEEEEeC---CCcEEEEeCCCCceeEEEecC--CCCCCcceEEEcCCCCEEEEEeCCCcEEEEEc
Q 001477 587 RKRSLGVVQFDTTRNRFLAAGD---EFQIKFWDMDNMNMLTTVDAD--GGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (1071)
Q Consensus 587 ~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~ 661 (1071)
.+ --.+++|.|.|++|++... ...|.+|.-+ |-.-..+... .....|..+.|++|+..||....|. |.+|-.
T Consensus 256 ~g-Le~~l~WrPsG~lIA~~q~~~~~~~VvFfErN-GLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~ 332 (928)
T PF04762_consen 256 DG-LEGALSWRPSGNLIASSQRLPDRHDVVFFERN-GLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTR 332 (928)
T ss_pred CC-ccCCccCCCCCCEEEEEEEcCCCcEEEEEecC-CcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEe
Confidence 22 4457899999999998652 4456666644 3333334332 2345789999999999999988765 999987
Q ss_pred CCh
Q 001477 662 SDG 664 (1071)
Q Consensus 662 ~~~ 664 (1071)
.+-
T Consensus 333 ~NY 335 (928)
T PF04762_consen 333 SNY 335 (928)
T ss_pred eCC
Confidence 654
No 263
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.34 E-value=1.2e-10 Score=131.75 Aligned_cols=237 Identities=13% Similarity=0.081 Sum_probs=143.9
Q ss_pred cccCCccceeeEEeecCCCCeEEEEeecCCCeEEEEEcCCC--eEEEEecCCCcccccccceeecccccccchhhhhccc
Q 001477 329 VYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVG--DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLND 406 (1071)
Q Consensus 329 ~~~~d~~~~~~~~~~~h~~~V~~~~fsp~g~~lla~gs~dg--~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 406 (1071)
++..|....+....+.+...+.+..|||||+.++.+...++ .|.+||+.+++... +..
T Consensus 200 l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~--------------------lt~ 259 (448)
T PRK04792 200 LMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK--------------------VTS 259 (448)
T ss_pred EEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE--------------------ecC
Confidence 34344333334444557778999999999996655544443 58888888775422 111
Q ss_pred CCCCeeEEEECCCCCEEEEE-eCCCe--EEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCC--cEEE
Q 001477 407 AAISVNRCVWGPDGLMLGVA-FSKHI--VHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK--MIKV 481 (1071)
Q Consensus 407 h~~~v~~~~~spd~~~la~~-~~dg~--i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~--~i~i 481 (1071)
..+.....+|||||+.|+.. +.+|. |.+||+.+++.. .+..+.......+|+|||+. ++++...++ .|++
T Consensus 260 ~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~----~lt~~~~~~~~p~wSpDG~~-I~f~s~~~g~~~Iy~ 334 (448)
T PRK04792 260 FPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALT----RITRHRAIDTEPSWHPDGKS-LIFTSERGGKPQIYR 334 (448)
T ss_pred CCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeE----ECccCCCCccceEECCCCCE-EEEEECCCCCceEEE
Confidence 22234568999999988764 55664 777788776532 34445556778999999995 333443333 5677
Q ss_pred EEccCCceeEEecCCCCCeEEEEecccCCccEEEEEec-CCe--EEEEEcCCCceeEEecCCCCcEEEEEEccCCCEEEE
Q 001477 482 WDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI-DGK--IKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFS 558 (1071)
Q Consensus 482 wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~-d~~--i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 558 (1071)
+|+.+++... +..........+|+|++ ++++..+. ++. |.++|+.++.... +... .......|+|||+.++.
T Consensus 335 ~dl~~g~~~~-Lt~~g~~~~~~~~SpDG--~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~spdG~~I~~ 409 (448)
T PRK04792 335 VNLASGKVSR-LTFEGEQNLGGSITPDG--RSMIMVNRTNGKFNIARQDLETGAMQV-LTST-RLDESPSVAPNGTMVIY 409 (448)
T ss_pred EECCCCCEEE-EecCCCCCcCeeECCCC--CEEEEEEecCCceEEEEEECCCCCeEE-ccCC-CCCCCceECCCCCEEEE
Confidence 7887776543 22122223456788765 56655544 443 5556776655433 2221 12234579999999987
Q ss_pred eccCCCCCCeEEEEeCCCCceeEEeecccccceeEEEEeC
Q 001477 559 CGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT 598 (1071)
Q Consensus 559 ~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 598 (1071)
.... ++...+++++. +|.....+..... .+...+|+|
T Consensus 410 ~~~~-~g~~~l~~~~~-~G~~~~~l~~~~g-~~~~p~Wsp 446 (448)
T PRK04792 410 STTY-QGKQVLAAVSI-DGRFKARLPAGQG-EVKSPAWSP 446 (448)
T ss_pred EEec-CCceEEEEEEC-CCCceEECcCCCC-CcCCCccCC
Confidence 6642 33456888887 4666666655433 566677776
No 264
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.33 E-value=7.9e-10 Score=123.83 Aligned_cols=227 Identities=11% Similarity=0.069 Sum_probs=141.0
Q ss_pred ccCCCCeeEEEECCCCCEEE---EEeCC--CeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeC----
Q 001477 405 NDAAISVNRCVWGPDGLMLG---VAFSK--HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD---- 475 (1071)
Q Consensus 405 ~~h~~~v~~~~~spd~~~la---~~~~d--g~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~---- 475 (1071)
......+..-+|||||+.++ +...+ ..|.+.++.+++.. .+....+.....+|||||+. ++++...
T Consensus 181 t~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~----~lt~~~g~~~~p~wSPDG~~-Laf~s~~~g~~ 255 (428)
T PRK01029 181 TQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGK----KILALQGNQLMPTFSPRKKL-LAFISDRYGNP 255 (428)
T ss_pred ccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCce----EeecCCCCccceEECCCCCE-EEEEECCCCCc
Confidence 33455677889999998533 33333 45777788877543 23334455667899999995 2333322
Q ss_pred CCcEEEEEccCC---ceeEEecCCCCCeEEEEecccCCccEEEEEe-cCCeEEEEE--cCC-CceeEEecCCCCcEEEEE
Q 001477 476 DKMIKVWDVVAG---RKQYTFEGHEAPVYSVCPHHKESIQFIFSTA-IDGKIKAWL--YDY-LGSRVDYDAPGNWCTMMA 548 (1071)
Q Consensus 476 d~~i~iwd~~~~---~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~-~d~~i~vwd--~~~-~~~~~~~~~~~~~i~~~~ 548 (1071)
+..+..|++..+ +......++.......+|+|++ ..|+..+ .+|...+|. +.. +.....+......+....
T Consensus 256 di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG--~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~ 333 (428)
T PRK01029 256 DLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDG--TRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPA 333 (428)
T ss_pred ceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCC--CEEEEEECCCCCceEEEEECcccccceEEeccCCCCcccee
Confidence 334455777653 3333333333445677898865 6666554 567655554 432 223344444445667889
Q ss_pred EccCCCEEEEeccCCCCCCeEEEEeCCCCceeEEeecccccceeEEEEeCCCCEEEEEe---CCCcEEEEeCCCCceeEE
Q 001477 549 YSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG---DEFQIKFWDMDNMNMLTT 625 (1071)
Q Consensus 549 ~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~ 625 (1071)
|+|||+.|+..+.. ++...|.+||+.+++....... .. .+....|+|||+.|+..+ ....|++||+.+++....
T Consensus 334 wSPDG~~Laf~~~~-~g~~~I~v~dl~~g~~~~Lt~~-~~-~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~L 410 (428)
T PRK01029 334 WSPDGKKIAFCSVI-KGVRQICVYDLATGRDYQLTTS-PE-NKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKI 410 (428)
T ss_pred ECCCCCEEEEEEcC-CCCcEEEEEECCCCCeEEccCC-CC-CccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe
Confidence 99999999877642 2456799999998876543322 22 456789999999887643 245789999988776544
Q ss_pred EecCCCCCCcceEEEcCCC
Q 001477 626 VDADGGLPASPRLRFNKEG 644 (1071)
Q Consensus 626 ~~~~~~~~~v~~~~~s~~~ 644 (1071)
.... ..+...+|+|-.
T Consensus 411 t~~~---g~~~~p~Ws~~~ 426 (428)
T PRK01029 411 VIGS---GEKRFPSWGAFP 426 (428)
T ss_pred ecCC---CcccCceecCCC
Confidence 4322 235667787743
No 265
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.32 E-value=9.4e-09 Score=112.52 Aligned_cols=247 Identities=15% Similarity=0.182 Sum_probs=162.9
Q ss_pred CCCeeEEEECCCCCEEEEEeC----CCeEEEEEecCC-CccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEE
Q 001477 408 AISVNRCVWGPDGLMLGVAFS----KHIVHLYTYNPT-GELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 482 (1071)
Q Consensus 408 ~~~v~~~~~spd~~~la~~~~----dg~i~iwd~~~~-~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iw 482 (1071)
......++++|++++|.++.. ++.|..|++... ..+...............++++|+++. ++++...+|.|.++
T Consensus 36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~-l~vany~~g~v~v~ 114 (345)
T PF10282_consen 36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRF-LYVANYGGGSVSVF 114 (345)
T ss_dssp SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSE-EEEEETTTTEEEEE
T ss_pred CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCE-EEEEEccCCeEEEE
Confidence 345677899999999988866 579999999875 344433344334455678999999994 34444568999999
Q ss_pred EccC-CceeEE---ec----------CCCCCeEEEEecccCCccEEEEE-ecCCeEEEEEcCCCcee----EEe-cCCCC
Q 001477 483 DVVA-GRKQYT---FE----------GHEAPVYSVCPHHKESIQFIFST-AIDGKIKAWLYDYLGSR----VDY-DAPGN 542 (1071)
Q Consensus 483 d~~~-~~~~~~---~~----------~h~~~v~~i~~~~~~~~~~l~s~-~~d~~i~vwd~~~~~~~----~~~-~~~~~ 542 (1071)
++.. |..... +. .......++.++|++ +++++. -....|.+|+++..... ..+ .....
T Consensus 115 ~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg--~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~ 192 (345)
T PF10282_consen 115 PLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDG--RFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGS 192 (345)
T ss_dssp EECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTS--SEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTS
T ss_pred EccCCcccceeeeecccCCCCCcccccccccceeEEECCCC--CEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCC
Confidence 9986 443322 21 123557788998865 666554 34567999999876521 122 23455
Q ss_pred cEEEEEEccCCCEEEEeccCCCCCCeEEEEeCC--CCc--eeEEeecc----cc-cceeEEEEeCCCCEEEEEe-CCCcE
Q 001477 543 WCTMMAYSADGTRLFSCGTSKEGESHLVEWNES--EGA--IKRTYSGF----RK-RSLGVVQFDTTRNRFLAAG-DEFQI 612 (1071)
Q Consensus 543 ~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~--~~~--~~~~~~~~----~~-~~v~~~~~~~~~~~l~~~~-~dg~i 612 (1071)
..+.++|+|+++++++... ..+.|.++++. ++. .+..+... .. .....++++|+|++|+++. ..+.|
T Consensus 193 GPRh~~f~pdg~~~Yv~~e---~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI 269 (345)
T PF10282_consen 193 GPRHLAFSPDGKYAYVVNE---LSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSI 269 (345)
T ss_dssp SEEEEEE-TTSSEEEEEET---TTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEE
T ss_pred CCcEEEEcCCcCEEEEecC---CCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEE
Confidence 7889999999999988764 47778888887 443 22222221 11 1466799999999988865 67789
Q ss_pred EEEeCC--CCce--eEEEecCCCCCCcceEEEcCCCCEEEEEeC-CCcEEEEEcC
Q 001477 613 KFWDMD--NMNM--LTTVDADGGLPASPRLRFNKEGSLLAVTTS-DNGIKILANS 662 (1071)
Q Consensus 613 ~iwd~~--~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~v~iw~~~ 662 (1071)
.+|+++ ++++ +..+...+. ....++++|+|++|+++.. ++.|.+|++.
T Consensus 270 ~vf~~d~~~g~l~~~~~~~~~G~--~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 270 SVFDLDPATGTLTLVQTVPTGGK--FPRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp EEEEECTTTTTEEEEEEEEESSS--SEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred EEEEEecCCCceEEEEEEeCCCC--CccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 999994 2333 333332222 4689999999999998874 6789999874
No 266
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.32 E-value=5.9e-10 Score=126.04 Aligned_cols=223 Identities=13% Similarity=0.086 Sum_probs=141.2
Q ss_pred cccCCCCeeEEEECCCCCEEEEEeCC---CeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCc--
Q 001477 404 LNDAAISVNRCVWGPDGLMLGVAFSK---HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKM-- 478 (1071)
Q Consensus 404 ~~~h~~~v~~~~~spd~~~la~~~~d---g~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~-- 478 (1071)
+..+...+.+..|||||+.|+..+.+ ..|.+||+.+++... +....+.....+|+|||+. ++++.+.++.
T Consensus 213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~----lt~~~g~~~~~~wSPDG~~-La~~~~~~g~~~ 287 (448)
T PRK04792 213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK----VTSFPGINGAPRFSPDGKK-LALVLSKDGQPE 287 (448)
T ss_pred eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE----ecCCCCCcCCeeECCCCCE-EEEEEeCCCCeE
Confidence 34466788999999999999887543 358888998875421 2222334457899999995 3345566664
Q ss_pred EEEEEccCCceeEEecCCCCCeEEEEecccCCccEEEEEe-cCCe--EEEEEcCCCceeEEecCCCCcEEEEEEccCCCE
Q 001477 479 IKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA-IDGK--IKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTR 555 (1071)
Q Consensus 479 i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~-~d~~--i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 555 (1071)
|+++|+.+++. ..+..+.......+|+|++ +.++..+ .++. |.++|+.+++... +..........+|+|||++
T Consensus 288 Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG--~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~~~~~~~~SpDG~~ 363 (448)
T PRK04792 288 IYVVDIATKAL-TRITRHRAIDTEPSWHPDG--KSLIFTSERGGKPQIYRVNLASGKVSR-LTFEGEQNLGGSITPDGRS 363 (448)
T ss_pred EEEEECCCCCe-EECccCCCCccceEECCCC--CEEEEEECCCCCceEEEEECCCCCEEE-EecCCCCCcCeeECCCCCE
Confidence 78889887764 3444455566778898865 5555544 3444 5566666555432 2222333445789999999
Q ss_pred EEEeccCCCCCCeEEEEeCCCCceeEEeecccccceeEEEEeCCCCEEEEEeC-CC--cEEEEeCCCCceeEEEecCCCC
Q 001477 556 LFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGD-EF--QIKFWDMDNMNMLTTVDADGGL 632 (1071)
Q Consensus 556 l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~ 632 (1071)
++..+.. .+...|.++|+.+++... +.... ......|+|+|+.++..+. +| .+++++. ++.....+..+.+
T Consensus 364 l~~~~~~-~g~~~I~~~dl~~g~~~~-lt~~~--~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~g- 437 (448)
T PRK04792 364 MIMVNRT-NGKFNIARQDLETGAMQV-LTSTR--LDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQG- 437 (448)
T ss_pred EEEEEec-CCceEEEEEECCCCCeEE-ccCCC--CCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCCC-
Confidence 9876542 234467788988876533 22221 1224579999998877553 33 3777787 4555555544322
Q ss_pred CCcceEEEcC
Q 001477 633 PASPRLRFNK 642 (1071)
Q Consensus 633 ~~v~~~~~s~ 642 (1071)
.+...+|+|
T Consensus 438 -~~~~p~Wsp 446 (448)
T PRK04792 438 -EVKSPAWSP 446 (448)
T ss_pred -CcCCCccCC
Confidence 456777776
No 267
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.31 E-value=8.9e-10 Score=125.56 Aligned_cols=223 Identities=13% Similarity=0.097 Sum_probs=142.3
Q ss_pred cccCCCCeeEEEECCCCCEEEEEeCC---CeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCC--c
Q 001477 404 LNDAAISVNRCVWGPDGLMLGVAFSK---HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK--M 478 (1071)
Q Consensus 404 ~~~h~~~v~~~~~spd~~~la~~~~d---g~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~--~ 478 (1071)
+..+...+...+|||||+.|+..+.+ ..|.+||+.+++.. .+....+.+...+|+|||+. ++++.+.++ .
T Consensus 194 l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~----~l~~~~g~~~~~~~SpDG~~-la~~~~~~g~~~ 268 (430)
T PRK00178 194 LLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRRE----QITNFEGLNGAPAWSPDGSK-LAFVLSKDGNPE 268 (430)
T ss_pred EecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEE----EccCCCCCcCCeEECCCCCE-EEEEEccCCCce
Confidence 34467789999999999999887644 46899999887543 22233445567899999995 333555454 6
Q ss_pred EEEEEccCCceeEEecCCCCCeEEEEecccCCccEEEEEe-cCC--eEEEEEcCCCceeEEecCCCCcEEEEEEccCCCE
Q 001477 479 IKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA-IDG--KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTR 555 (1071)
Q Consensus 479 i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~-~d~--~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 555 (1071)
|++||+.+++.. .+..+........|+|++ ..++..+ .++ .|.++|+.+++... +...........|+|||++
T Consensus 269 Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg--~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~~~~~~~~~~Spdg~~ 344 (430)
T PRK00178 269 IYVMDLASRQLS-RVTNHPAIDTEPFWGKDG--RTLYFTSDRGGKPQIYKVNVNGGRAER-VTFVGNYNARPRLSADGKT 344 (430)
T ss_pred EEEEECCCCCeE-EcccCCCCcCCeEECCCC--CEEEEEECCCCCceEEEEECCCCCEEE-eecCCCCccceEECCCCCE
Confidence 888899887653 455555566677888865 5555444 344 47777776655432 2222233446789999999
Q ss_pred EEEeccCCCCCCeEEEEeCCCCceeEEeecccccceeEEEEeCCCCEEEEEeCC---CcEEEEeCCCCceeEEEecCCCC
Q 001477 556 LFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE---FQIKFWDMDNMNMLTTVDADGGL 632 (1071)
Q Consensus 556 l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~ 632 (1071)
++..... ++...|.+||+.+++... +... . ......|+|+|+.++..+.+ ..|+++++... ....+..+.
T Consensus 345 i~~~~~~-~~~~~l~~~dl~tg~~~~-lt~~-~-~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~-~~~~l~~~~-- 417 (430)
T PRK00178 345 LVMVHRQ-DGNFHVAAQDLQRGSVRI-LTDT-S-LDESPSVAPNGTMLIYATRQQGRGVLMLVSINGR-VRLPLPTAQ-- 417 (430)
T ss_pred EEEEEcc-CCceEEEEEECCCCCEEE-ccCC-C-CCCCceECCCCCEEEEEEecCCceEEEEEECCCC-ceEECcCCC--
Confidence 9877642 234468999998876533 3221 1 12246899999998876633 35777777543 333443322
Q ss_pred CCcceEEEcC
Q 001477 633 PASPRLRFNK 642 (1071)
Q Consensus 633 ~~v~~~~~s~ 642 (1071)
..+...+|+|
T Consensus 418 g~~~~p~ws~ 427 (430)
T PRK00178 418 GEVREPSWSP 427 (430)
T ss_pred CCcCCCccCC
Confidence 2456666766
No 268
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.29 E-value=4.1e-10 Score=128.42 Aligned_cols=225 Identities=14% Similarity=0.114 Sum_probs=144.7
Q ss_pred CccccCCccceeeEEeecCCCCeEEEEeecCCCeEEEEEcCC--CeEEEEecCCCcccccccceeecccccccchhhhhc
Q 001477 327 PNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNV--GDISLWEVGSRERLAHKPFKVWDISAASMPLQNALL 404 (1071)
Q Consensus 327 ~~~~~~d~~~~~~~~~~~h~~~V~~~~fsp~g~~lla~gs~d--g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 404 (1071)
..+|..|.........+.+...+...+|||||++++++...+ ..|.+||+.+++... +
T Consensus 170 ~~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~--------------------~ 229 (417)
T TIGR02800 170 YELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK--------------------V 229 (417)
T ss_pred ceEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE--------------------e
Confidence 344555544444455555777899999999999655443322 479999998875432 2
Q ss_pred ccCCCCeeEEEECCCCCEEEEE-eCCC--eEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeC-CC--c
Q 001477 405 NDAAISVNRCVWGPDGLMLGVA-FSKH--IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD-DK--M 478 (1071)
Q Consensus 405 ~~h~~~v~~~~~spd~~~la~~-~~dg--~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~-d~--~ 478 (1071)
..+.+.+.+++|+|||+.|+.. +.++ .|.+||+.++... .+..+........|+|||+ .|+..+. ++ .
T Consensus 230 ~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~----~l~~~~~~~~~~~~s~dg~--~l~~~s~~~g~~~ 303 (417)
T TIGR02800 230 ASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT----RLTNGPGIDTEPSWSPDGK--SIAFTSDRGGSPQ 303 (417)
T ss_pred ecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEE----ECCCCCCCCCCEEECCCCC--EEEEEECCCCCce
Confidence 2345567789999999987754 4343 5888898876432 3334555566789999999 4554433 33 5
Q ss_pred EEEEEccCCceeEEecCCCCCeEEEEecccCCccEEEEEecCC---eEEEEEcCCCceeEEecCCCCcEEEEEEccCCCE
Q 001477 479 IKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDG---KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTR 555 (1071)
Q Consensus 479 i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~---~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 555 (1071)
|+++|+.+++.. .+..+...+....|+|++ .+++.++.++ .|.+||+.++.... +... .......|+|||++
T Consensus 304 iy~~d~~~~~~~-~l~~~~~~~~~~~~spdg--~~i~~~~~~~~~~~i~~~d~~~~~~~~-l~~~-~~~~~p~~spdg~~ 378 (417)
T TIGR02800 304 IYMMDADGGEVR-RLTFRGGYNASPSWSPDG--DLIAFVHREGGGFNIAVMDLDGGGERV-LTDT-GLDESPSFAPNGRM 378 (417)
T ss_pred EEEEECCCCCEE-EeecCCCCccCeEECCCC--CEEEEEEccCCceEEEEEeCCCCCeEE-ccCC-CCCCCceECCCCCE
Confidence 888888776643 444455667778888754 7787777765 78889988754332 2221 22345689999999
Q ss_pred EEEeccCCCCCCeEEEEeCCCCceeEEee
Q 001477 556 LFSCGTSKEGESHLVEWNESEGAIKRTYS 584 (1071)
Q Consensus 556 l~~~~~~~d~~~~i~iwd~~~~~~~~~~~ 584 (1071)
|+..... ++...+++.+.. +.....+.
T Consensus 379 l~~~~~~-~~~~~l~~~~~~-g~~~~~~~ 405 (417)
T TIGR02800 379 ILYATTR-GGRGVLGLVSTD-GRFRARLP 405 (417)
T ss_pred EEEEEeC-CCcEEEEEEECC-CceeeECC
Confidence 9887653 233456666643 44444444
No 269
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.28 E-value=1.1e-09 Score=125.01 Aligned_cols=210 Identities=13% Similarity=0.061 Sum_probs=138.7
Q ss_pred cccCCCCeeEEEECCCCCEEEEEeCC---CeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCC--c
Q 001477 404 LNDAAISVNRCVWGPDGLMLGVAFSK---HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK--M 478 (1071)
Q Consensus 404 ~~~h~~~v~~~~~spd~~~la~~~~d---g~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~--~ 478 (1071)
+..+...+...+|||||++|+.++.+ ..|++||+.+++.. .+..+.+.+.+++|+|||+. ++++.+.++ .
T Consensus 185 l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~----~~~~~~~~~~~~~~spDg~~-l~~~~~~~~~~~ 259 (417)
T TIGR02800 185 ITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQRE----KVASFPGMNGAPAFSPDGSK-LAVSLSKDGNPD 259 (417)
T ss_pred eecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEE----EeecCCCCccceEECCCCCE-EEEEECCCCCcc
Confidence 34466678999999999999987654 47999999887543 23345566778999999985 334554444 5
Q ss_pred EEEEEccCCceeEEecCCCCCeEEEEecccCCccEEEEEec-CC--eEEEEEcCCCceeEEecCCCCcEEEEEEccCCCE
Q 001477 479 IKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI-DG--KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTR 555 (1071)
Q Consensus 479 i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~-d~--~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 555 (1071)
|++||+.+++.. .+..+........|+|++ ..|+..+. ++ .|.++|+...+. ..+...........|+|+|++
T Consensus 260 i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg--~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~ 335 (417)
T TIGR02800 260 IYVMDLDGKQLT-RLTNGPGIDTEPSWSPDG--KSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGYNASPSWSPDGDL 335 (417)
T ss_pred EEEEECCCCCEE-ECCCCCCCCCCEEECCCC--CEEEEEECCCCCceEEEEECCCCCE-EEeecCCCCccCeEECCCCCE
Confidence 889998877543 444455555567888754 66665543 33 577778775543 334444556778899999999
Q ss_pred EEEeccCCCCCCeEEEEeCCCCceeEEeecccccceeEEEEeCCCCEEEEEeCCC---cEEEEeCCCCceeEEEe
Q 001477 556 LFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEF---QIKFWDMDNMNMLTTVD 627 (1071)
Q Consensus 556 l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~ 627 (1071)
++.+..+. +...|.+||+.++.... +.... ......|+|+++.|+..+.++ .+++.+.. +.....+.
T Consensus 336 i~~~~~~~-~~~~i~~~d~~~~~~~~-l~~~~--~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~-g~~~~~~~ 405 (417)
T TIGR02800 336 IAFVHREG-GGFNIAVMDLDGGGERV-LTDTG--LDESPSFAPNGRMILYATTRGGRGVLGLVSTD-GRFRARLP 405 (417)
T ss_pred EEEEEccC-CceEEEEEeCCCCCeEE-ccCCC--CCCCceECCCCCEEEEEEeCCCcEEEEEEECC-CceeeECC
Confidence 99876422 24479999998765432 32221 234568999999988876543 45555543 34444443
No 270
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.25 E-value=1.5e-09 Score=115.56 Aligned_cols=194 Identities=13% Similarity=0.155 Sum_probs=156.3
Q ss_pred CCCCCEEEEEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEe------c------------CCCceEEEEEeCCCc
Q 001477 417 GPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFA------H------------PNKQLCIVTCGDDKM 478 (1071)
Q Consensus 417 spd~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s------~------------d~~~~~l~s~~~d~~ 478 (1071)
.|.+.++|....||.+++|+...++..........-.+..++..|. | .+...+++-|...|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 3456789999999999999999887554332222233445555553 1 122237889999999
Q ss_pred EEEEEccCCceeEEec--CCCCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCceeEEecCCCCcEEEEEEccCCCEE
Q 001477 479 IKVWDVVAGRKQYTFE--GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRL 556 (1071)
Q Consensus 479 i~iwd~~~~~~~~~~~--~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 556 (1071)
|.++++..|+....+. .|.+.|+++.++.+- ..|.+++.|+.+..|+................+.+++.+|||..+
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~--~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l 159 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRL--GCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKIL 159 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeeccccc--CceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEE
Confidence 9999999999888776 599999999887544 789999999999999999988888888888899999999999999
Q ss_pred EEeccCCCCCCeEEEEeCCCCceeEEeecccccceeEEEEeCC-----CCEEEEE-eCCCcEEEEeCCC
Q 001477 557 FSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTT-----RNRFLAA-GDEFQIKFWDMDN 619 (1071)
Q Consensus 557 ~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~~-~~dg~i~iwd~~~ 619 (1071)
++++ ++|.+||+++++.+..|.+|.. +|++++|..+ |.+++++ ..+..+.+|-+..
T Consensus 160 ~~as------~~ik~~~~~~kevv~~ftgh~s-~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 160 LTAS------RQIKVLDIETKEVVITFTGHGS-PVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred Eecc------ceEEEEEccCceEEEEecCCCc-ceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 9885 4599999999999999999988 9999999877 7777774 4566678887664
No 271
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.23 E-value=1.1e-09 Score=105.81 Aligned_cols=252 Identities=14% Similarity=0.088 Sum_probs=164.7
Q ss_pred CCCeEEEEeec---CCCeEEEEEcCCCeEEEEecCCCccccc-ccceeecccccccchhhhhcccCCCCeeEEEECCCCC
Q 001477 346 GSNVMSMDFHP---QQQTILLVGTNVGDISLWEVGSRERLAH-KPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGL 421 (1071)
Q Consensus 346 ~~~V~~~~fsp---~g~~lla~gs~dg~i~iwd~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd~~ 421 (1071)
...+..+.|+- +|...++-+..+|.|.++.......... +.++. .+-......++.|++.+.
T Consensus 69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~--------------~ki~~~~~lslD~~~~~~ 134 (339)
T KOG0280|consen 69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSS--------------KKISVVEALSLDISTSGT 134 (339)
T ss_pred ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccch--------------hhhhheeeeEEEeeccCc
Confidence 45677777763 4443566677789999987653322211 00000 000111355788999999
Q ss_pred EEEEEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEcc-CCceeEE-ecCCCCC
Q 001477 422 MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV-AGRKQYT-FEGHEAP 499 (1071)
Q Consensus 422 ~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~-~~~~~~~-~~~h~~~ 499 (1071)
.++++-.+|.+.+-+..... +.....++.|.-+.+.+.|+....+ ++.+||+|+.+..||++ .++.+.. .+.|...
T Consensus 135 ~i~vs~s~G~~~~v~~t~~~-le~vq~wk~He~E~Wta~f~~~~pn-lvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~G 212 (339)
T KOG0280|consen 135 KIFVSDSRGSISGVYETEMV-LEKVQTWKVHEFEAWTAKFSDKEPN-LVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSG 212 (339)
T ss_pred eEEEEcCCCcEEEEecceee-eeecccccccceeeeeeecccCCCc-eEEecCCCceEEEEEecCCcceeeecceeeecc
Confidence 99999999999855544322 2333367789999999999887766 89999999999999999 3444443 4568999
Q ss_pred eEEEEecccCCccEEEEEecCCeEEEEEcCCCceeEEecCCCCcEEEEEEccCCC--EEEEeccCCCCCCeEEEEeCCCC
Q 001477 500 VYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGT--RLFSCGTSKEGESHLVEWNESEG 577 (1071)
Q Consensus 500 v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~--~l~~~~~~~d~~~~i~iwd~~~~ 577 (1071)
|.+|.-+|. .+.++++|+.|-.|++||.++......-..-.+.|..+.++|.-. .+++|-.+ -..+-+...+
T Consensus 213 V~SI~ss~~-~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~-----G~ki~~~~~~ 286 (339)
T KOG0280|consen 213 VVSIYSSPP-KPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHN-----GAKILDSSDK 286 (339)
T ss_pred eEEEecCCC-CCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhc-----CceEEEeccc
Confidence 999988875 458999999999999999997776665555668999999999543 34444321 1445554433
Q ss_pred --c---eeEEeecccccceeEEEEeCCCCEEEEEe-CCCcEE-EEeCCCC
Q 001477 578 --A---IKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIK-FWDMDNM 620 (1071)
Q Consensus 578 --~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~-iwd~~~~ 620 (1071)
+ .....+.|.. -+..-.|......+++++ .|+.++ +|-.-++
T Consensus 287 ~~e~~~~~~s~~~hdS-l~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 287 VLEFQIVLPSDKIHDS-LCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred ccchheeeeccccccc-eeeccccccccceeeeeeccccceeeeeeeccC
Confidence 2 2233334433 333344433335677755 666644 6654443
No 272
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.23 E-value=1.8e-08 Score=106.54 Aligned_cols=276 Identities=13% Similarity=0.081 Sum_probs=167.3
Q ss_pred ccccCCccceeeEEeecCCCCeEEEEeecCCCeEEEEEc---------CCCeEEEEecCCCcccccccceeecccccccc
Q 001477 328 NVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGT---------NVGDISLWEVGSRERLAHKPFKVWDISAASMP 398 (1071)
Q Consensus 328 ~~~~~d~~~~~~~~~~~h~~~V~~~~fsp~g~~lla~gs---------~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~ 398 (1071)
.++..|..+.+.+.++.-...-..+ +||||+.+.++.+ .+..|.+||..+++.+....+ ...+
T Consensus 28 ~v~ViD~~~~~v~g~i~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~-------p~~p 99 (352)
T TIGR02658 28 QVYTIDGEAGRVLGMTDGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIEL-------PEGP 99 (352)
T ss_pred eEEEEECCCCEEEEEEEccCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEcc-------CCCc
Confidence 3456666677888877744444445 9999997777667 689999999999987753111 0000
Q ss_pred hhhhhcccCCCCeeEEEECCCCCEEEEEe-C-CCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCC
Q 001477 399 LQNALLNDAAISVNRCVWGPDGLMLGVAF-S-KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD 476 (1071)
Q Consensus 399 ~~~~~~~~h~~~v~~~~~spd~~~la~~~-~-dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d 476 (1071)
. + ........+++||||++|.+.. . +..|.+.|+.+++.+..... .+...-...++++. + .-+.|
T Consensus 100 --~--~-~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v----p~~~~vy~t~e~~~---~-~~~~D 166 (352)
T TIGR02658 100 --R--F-LVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV----PDCYHIFPTANDTF---F-MHCRD 166 (352)
T ss_pred --h--h-hccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC----CCCcEEEEecCCcc---E-EEeec
Confidence 0 0 0122345789999999999875 3 78999999999887763321 11111111211111 1 11223
Q ss_pred CcEEEEEcc-CCcee-E---EecCCCCCeEEE-EecccCCccEEEEEecCCeEEEEEcCCCceeE-----EecC------
Q 001477 477 KMIKVWDVV-AGRKQ-Y---TFEGHEAPVYSV-CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV-----DYDA------ 539 (1071)
Q Consensus 477 ~~i~iwd~~-~~~~~-~---~~~~h~~~v~~i-~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~-----~~~~------ 539 (1071)
|......+. +|+.. . .+.+...++..- .+.+. +|.++..... |.|.+.|+....... .+..
T Consensus 167 g~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~-dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~ 244 (352)
T TIGR02658 167 GSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNK-SGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADG 244 (352)
T ss_pred CceEEEEecCCCceEEeeeeeecCCccccccCCceEcC-CCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccc
Confidence 333222211 12211 0 111100111000 23332 4466666665 999999965433221 1111
Q ss_pred -CCCcEEEEEEccCCCEEEEeccC------CCCCCeEEEEeCCCCceeEEeecccccceeEEEEeCCCC-EEEEEe-CCC
Q 001477 540 -PGNWCTMMAYSADGTRLFSCGTS------KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRN-RFLAAG-DEF 610 (1071)
Q Consensus 540 -~~~~i~~~~~s~~~~~l~~~~~~------~d~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~-~dg 610 (1071)
......-++++++++.++..... +++.+.|.++|..+++.+..+.... .+..++++||++ ++++.. .++
T Consensus 245 wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~--~~~~iavS~Dgkp~lyvtn~~s~ 322 (352)
T TIGR02658 245 WRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGH--EIDSINVSQDAKPLLYALSTGDK 322 (352)
T ss_pred cCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCC--ceeeEEECCCCCeEEEEeCCCCC
Confidence 12234459999999998874311 1234679999999999999887643 688899999999 887765 678
Q ss_pred cEEEEeCCCCceeEEEec
Q 001477 611 QIKFWDMDNMNMLTTVDA 628 (1071)
Q Consensus 611 ~i~iwd~~~~~~~~~~~~ 628 (1071)
.|.+.|..+++.+..+..
T Consensus 323 ~VsViD~~t~k~i~~i~~ 340 (352)
T TIGR02658 323 TLYIFDAETGKELSSVNQ 340 (352)
T ss_pred cEEEEECcCCeEEeeecc
Confidence 899999999999998843
No 273
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.17 E-value=4.9e-08 Score=109.32 Aligned_cols=145 Identities=12% Similarity=0.042 Sum_probs=96.6
Q ss_pred EEEEEeCCCcEEEEEccCCceeEEecCCCCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCceeEEecCCCCcEEEEE
Q 001477 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMA 548 (1071)
Q Consensus 469 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~ 548 (1071)
.++.++.++.|..+|..+|+.+..+............ ++..++.++.++.+..+|..+++................
T Consensus 67 ~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v----~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~ 142 (377)
T TIGR03300 67 KVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA----DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPL 142 (377)
T ss_pred EEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE----cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCE
Confidence 5788888999999999999988766543322222222 336788899999999999998888776554332211111
Q ss_pred EccCCCEEEEeccCCCCCCeEEEEeCCCCceeEEeecccccce-----eEEEEeCCCCEEEEEeCCCcEEEEeCCCCcee
Q 001477 549 YSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSL-----GVVQFDTTRNRFLAAGDEFQIKFWDMDNMNML 623 (1071)
Q Consensus 549 ~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 623 (1071)
. .+..++.+. .++.++.||.++|+.+..+..... .+ .+.... +..++.+..+|.+..+|.++|+.+
T Consensus 143 v--~~~~v~v~~----~~g~l~a~d~~tG~~~W~~~~~~~-~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~ 213 (377)
T TIGR03300 143 V--ANGLVVVRT----NDGRLTALDAATGERLWTYSRVTP-ALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPL 213 (377)
T ss_pred E--ECCEEEEEC----CCCeEEEEEcCCCceeeEEccCCC-ceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEe
Confidence 2 234555554 277899999999998877654332 11 111122 246777888899999999988876
Q ss_pred EEE
Q 001477 624 TTV 626 (1071)
Q Consensus 624 ~~~ 626 (1071)
...
T Consensus 214 W~~ 216 (377)
T TIGR03300 214 WEQ 216 (377)
T ss_pred eee
Confidence 543
No 274
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=99.17 E-value=2.8e-10 Score=108.07 Aligned_cols=170 Identities=18% Similarity=0.252 Sum_probs=125.8
Q ss_pred cchHHHHHHHHHHhhhccHHHHHHHHHHHcCCCcc---------HHHHHHHhhcccHHHHHHHhcCcCcccccchhhHHH
Q 001477 3 SLSRELVFLILQFLDEEKFKETVHKLEQESGFFFN---------MKHFEDQVQAGEWDEVERYLCGFTKVEDNRYSMKIF 73 (1071)
Q Consensus 3 ~~~~e~~rli~q~L~~~g~~~s~~~L~~Esg~~~~---------~~~l~~~i~~g~w~~~~~~l~~l~~~~~~~~~~~~~ 73 (1071)
...+|+.|||+.||-..||.++|..+.+|+|+... ....|.+|..|+-++|+..+.++.+---.. ...+.
T Consensus 24 ~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~-n~~l~ 102 (228)
T KOG2659|consen 24 VMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDT-NRELF 102 (228)
T ss_pred cchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHcc-chhHH
Confidence 45789999999999999999999999999999872 577899999999999999999885432222 23489
Q ss_pred HHHHHHHHHHHhcccCHHHHHHHHHhhcccccccCHHHHHHHHHhhcccCccchhhhccCCC--chhHHHHHHHHHHhhc
Q 001477 74 FEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLTLDNFRQNEQLSKYGD--TKSARNIMLVELKKLI 151 (1071)
Q Consensus 74 ~~i~~~~~lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~--~~~~R~~l~~~l~~~~ 151 (1071)
|.+.+|+++||+..+...+|+.|++.++.|....+++.+..|...+..--++..+.. ..+. ....|..+...+.+.|
T Consensus 103 F~Lq~q~lIEliR~~~~eeal~F~q~~LA~~a~e~~~~~~elE~~l~lLvf~~~~~s-p~~~l~~~s~R~kvA~~vN~ai 181 (228)
T KOG2659|consen 103 FHLQQLHLIELIREGKTEEALEFAQTKLAPFAEENPKKMEELERTLALLVFELSQES-PSAELLSQSLRQKVASEVNSAI 181 (228)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcCCcccC-cHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999987777777777766554323211110 0000 2334888888877766
Q ss_pred ccCccccccCCCCCCcchHHHHHHHHHHHHH
Q 001477 152 EANPLFRDKLSFPSFKSSRLRTLINQSLNWQ 182 (1071)
Q Consensus 152 ~~~~~~~~~~~~~~~p~~rL~~ll~qa~~~q 182 (1071)
-...- . -...+|..||+.-+..|
T Consensus 182 L~~~~---~-----~~~~~l~~llk~~~~~~ 204 (228)
T KOG2659|consen 182 LASQE---H-----ESEPKLPFLLKLISWAQ 204 (228)
T ss_pred HHHhc---c-----cccchHHHHHHHHHHHH
Confidence 32110 0 12558888886555555
No 275
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.15 E-value=3.1e-10 Score=122.49 Aligned_cols=284 Identities=15% Similarity=0.224 Sum_probs=194.8
Q ss_pred cCCcceeeccCCCCCCccccCCc-------cceeeEEeecCC--CCeEEEEeecCCC-eEEEEEcCCCeEEEEecCCCcc
Q 001477 312 TGQSDEVSFAGVAHTPNVYSQDD-------LTKTVVRTLNQG--SNVMSMDFHPQQQ-TILLVGTNVGDISLWEVGSRER 381 (1071)
Q Consensus 312 ~~~~~~v~~s~~~~~~~~~~~d~-------~~~~~~~~~~h~--~~V~~~~fsp~g~-~lla~gs~dg~i~iwd~~~~~~ 381 (1071)
.++++.+...|.|+.+++.+..+ .++.+.+.+.|. -.|-.+.|||... -+-++........+|++.....
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~gl~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~ 103 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQGLYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSS 103 (1081)
T ss_pred cCcccceeeccccchhhhhhhcCeEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCCc
Confidence 45677888999999888765433 467777777764 4588899998642 1334445566777898864332
Q ss_pred cccccceeecccccccchhhhhcccCCCCeeEEEECCC-CCEEEEEeCCCeEEEEEecCCCccceeeEeecccCCEEEEE
Q 001477 382 LAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD-GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIA 460 (1071)
Q Consensus 382 ~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd-~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~ 460 (1071)
.. ...++-+|+..|+.+.|.|. ...+|+++.|..+..||+.+.... ..........-..++
T Consensus 104 ~a----------------Ief~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p--~ys~~~w~s~asqVk 165 (1081)
T KOG0309|consen 104 NA----------------IEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRP--FYSTSSWRSAASQVK 165 (1081)
T ss_pred cc----------------eEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcc--eeeeecccccCceee
Confidence 11 12236789999999999995 458999999999999999886532 223334445677899
Q ss_pred EecCCCceEEEEEeCCCcEEEEEccCC-ceeEEecCCCCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCceeEEec-
Q 001477 461 FAHPNKQLCIVTCGDDKMIKVWDVVAG-RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD- 538 (1071)
Q Consensus 461 ~s~d~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~- 538 (1071)
|+.... .+...+..+.|.+||.+.| .++..+++|...|+++.|+.... ..+.+.+.|++|++||.+.........
T Consensus 166 wnyk~p--~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~-s~~~s~~~d~tvkfw~y~kSt~e~~~~v 242 (1081)
T KOG0309|consen 166 WNYKDP--NVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKY-SEIMSSSNDGTVKFWDYSKSTTESKRTV 242 (1081)
T ss_pred ecccCc--chhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhh-hhhcccCCCCceeeecccccccccceec
Confidence 987766 4666677889999999875 57789999999999999875443 468899999999999998765443322
Q ss_pred CCCCcEEEEEEccCCCEEEEeccCCCCCCeEEE---------EeCCC-CceeEEeecccccceeEEEEeCCC--------
Q 001477 539 APGNWCTMMAYSADGTRLFSCGTSKEGESHLVE---------WNESE-GAIKRTYSGFRKRSLGVVQFDTTR-------- 600 (1071)
Q Consensus 539 ~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~i---------wd~~~-~~~~~~~~~~~~~~v~~~~~~~~~-------- 600 (1071)
....+|..-++.|-|.-...--. .|+..+.+ |+..+ .+++.+|.||.+ .|....|-..+
T Consensus 243 tt~~piw~~r~~Pfg~g~~~mp~--~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D-~V~eFlWR~r~e~~~d~d~ 319 (1081)
T KOG0309|consen 243 TTNFPIWRGRYLPFGEGYCIMPM--VGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDD-VVLEFLWRKRKECDGDYDS 319 (1081)
T ss_pred cccCcceeccccccCceeEeccc--cCCeeeeeccccchhhhhccccCCcceeeecCcch-HHHHHhhhhcccccCCCCc
Confidence 23446666666665543322111 11223333 44333 467889999987 55444343221
Q ss_pred --CEEEEEeCCCcEEEEeCCC
Q 001477 601 --NRFLAAGDEFQIKFWDMDN 619 (1071)
Q Consensus 601 --~~l~~~~~dg~i~iwd~~~ 619 (1071)
-.|++-+.|.++++|-+.+
T Consensus 320 rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 320 RDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred cceeEEEeecCCceEeeeccH
Confidence 3689999999999998764
No 276
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.15 E-value=2.1e-09 Score=114.46 Aligned_cols=199 Identities=13% Similarity=0.090 Sum_probs=148.8
Q ss_pred cccchhhhccccceeEEEeccccc----CCCCCccceeecceeccCCCCCccccccCCCCCCCCCeEE----EEEecCCc
Q 001477 782 NSGLSLLALASNAVHKLWKWQRTE----RNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAAC----IALSKNDS 853 (1071)
Q Consensus 782 ~~g~~l~~~~~dg~v~vw~~~~~~----~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~----v~~s~d~~ 853 (1071)
|.+.+++....||.+++|+...+. +.|......+..-..|.+.-+.. .....+ ...+.|-.
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s-----------~~k~~~~~~~~~~s~~t~ 71 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYS-----------PMKWLSLEKAKKASLDTS 71 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccc-----------hHHHHhHHHHhhccCCce
Confidence 445677888889999999987763 33333333333333444211110 001111 11123444
Q ss_pred EEEEEe-CCeEEEEECCCCeEEEEEe--CCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEccCCeEEEEecCcCCCeeEE
Q 001477 854 YVMSAS-GGKVSLFNMMTFKVMTMFM--SPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGL 930 (1071)
Q Consensus 854 ~la~~~-dg~i~vwd~~~~~~~~~~~--~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~~~v~~l 930 (1071)
.++-|. .|.|.+|+...++....+. .|.+.|+++.++. +-..|.+++.|+.+..|+..+++.+..+.+....+.++
T Consensus 72 ~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~-~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl 150 (541)
T KOG4547|consen 72 MLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQ-RLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSL 150 (541)
T ss_pred EEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeeccc-ccCceEecCCceeEEEEecccceeeeeeccCCCccceE
Confidence 566666 8999999999999998886 4889999999998 88899999999999999999999999999999999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeecCCCCCCCCCCCceEEEEccC-----CCEEEEE--ECCeEEEEeC
Q 001477 931 AFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHND-----QTHLLVV--HESQISVYDS 1002 (1071)
Q Consensus 931 ~~s~d~~~l~s~~~d~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-----g~~l~~~--~d~~i~vwd~ 1002 (1071)
+.+|||..|++++. +|++||+++++. +..+.||. .+|+.++|.-+ |.++.++ .+..+.+|-+
T Consensus 151 ~is~D~~~l~~as~--~ik~~~~~~kev-----v~~ftgh~---s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v 219 (541)
T KOG4547|consen 151 CISPDGKILLTASR--QIKVLDIETKEV-----VITFTGHG---SPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVV 219 (541)
T ss_pred EEcCCCCEEEeccc--eEEEEEccCceE-----EEEecCCC---cceEEEEEEEeccccccceeeeccccccceeEEEE
Confidence 99999999998874 699999999774 44566776 78999999877 7888774 4677888887
No 277
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.13 E-value=1.3e-08 Score=98.74 Aligned_cols=272 Identities=13% Similarity=0.085 Sum_probs=169.9
Q ss_pred CCeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeEEEECC---CCC-EEEEEeCCCeEEEEEecCCCcc
Q 001477 368 VGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP---DGL-MLGVAFSKHIVHLYTYNPTGEL 443 (1071)
Q Consensus 368 dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~sp---d~~-~la~~~~dg~i~iwd~~~~~~~ 443 (1071)
.|.+.+|++...+...-.. +.......+..+.|.. +|. .++-+-.+|.|.+|........
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~----------------~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss 108 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDT----------------LQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESS 108 (339)
T ss_pred ccceEEEeecccccCccce----------------eeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceee
Confidence 4567777776655432111 1222445677788864 555 5666777899999987654332
Q ss_pred ceeeEeecccC---CEEEEEEecCCCceEEEEEeCCCcEEEEEccCCcee--EEecCCCCCeEEEEecccCCccEEEEEe
Q 001477 444 RQHLEIDAHVG---GVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ--YTFEGHEAPVYSVCPHHKESIQFIFSTA 518 (1071)
Q Consensus 444 ~~~~~~~~h~~---~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~--~~~~~h~~~v~~i~~~~~~~~~~l~s~~ 518 (1071)
.....+..-.- ...++.|++.+. -++++-.+|.+.+-+....... +.++.|+.+.+...|+...+ +++++|+
T Consensus 109 ~~L~~ls~~ki~~~~~lslD~~~~~~--~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~p-nlvytGg 185 (339)
T KOG0280|consen 109 VHLRGLSSKKISVVEALSLDISTSGT--KIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEP-NLVYTGG 185 (339)
T ss_pred eeecccchhhhhheeeeEEEeeccCc--eEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCC-ceEEecC
Confidence 21112211111 245778999888 5888888999986665555443 47889999999999987654 8999999
Q ss_pred cCCeEEEEEcCCCce-eEE-ecCCCCcEEEEEEcc-CCCEEEEeccCCCCCCeEEEEeCC-CCceeEEeecccccceeEE
Q 001477 519 IDGKIKAWLYDYLGS-RVD-YDAPGNWCTMMAYSA-DGTRLFSCGTSKEGESHLVEWNES-EGAIKRTYSGFRKRSLGVV 594 (1071)
Q Consensus 519 ~d~~i~vwd~~~~~~-~~~-~~~~~~~i~~~~~s~-~~~~l~~~~~~~d~~~~i~iwd~~-~~~~~~~~~~~~~~~v~~~ 594 (1071)
.|+.+..||++.++. ... ...|...|.++.-+| .+.++++|+. |..|++||.+ -++++..-. ..+.|..+
T Consensus 186 DD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsY----De~i~~~DtRnm~kPl~~~~--v~GGVWRi 259 (339)
T KOG0280|consen 186 DDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSY----DECIRVLDTRNMGKPLFKAK--VGGGVWRI 259 (339)
T ss_pred CCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEecc----ccceeeeehhcccCccccCc--cccceEEE
Confidence 999999999995443 332 455777888888876 5778999987 6679999998 466654333 33479999
Q ss_pred EEeCCCC-EEEEEeCCCcEEEEeCCCCcee--EEEec-CCCCCCcceEEEcCCCCEEEEEeC-CCcEE-EEEcCCh
Q 001477 595 QFDTTRN-RFLAAGDEFQIKFWDMDNMNML--TTVDA-DGGLPASPRLRFNKEGSLLAVTTS-DNGIK-ILANSDG 664 (1071)
Q Consensus 595 ~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~--~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~-dg~v~-iw~~~~~ 664 (1071)
.++|.-. .++.++.-.-.+|-+.+.+... ..+.. ..+..-+..-.|......+++++. |+.++ +|-..++
T Consensus 260 ~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 260 KHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred EecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence 9998643 2333333333566665543322 11111 122122334444433456777653 55644 6755443
No 278
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.13 E-value=2.1e-09 Score=106.15 Aligned_cols=202 Identities=15% Similarity=0.245 Sum_probs=133.0
Q ss_pred EeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEcc-CCceeEEec-CCCCCeEEEEecccCCccEEEEEecCCeEEE
Q 001477 448 EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV-AGRKQYTFE-GHEAPVYSVCPHHKESIQFIFSTAIDGKIKA 525 (1071)
Q Consensus 448 ~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~-~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~v 525 (1071)
.++||...|++...-|... -+++.+.|.++++|--+ .++.-..+. ....+++++.+.+.. ..|+.|-..|++.-
T Consensus 19 ~~eG~~d~vn~~~l~~~e~--gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~--~~L~vg~~ngtvte 94 (404)
T KOG1409|consen 19 KIEGSQDDVNAAILIPKEE--GVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSES--RRLYVGQDNGTVTE 94 (404)
T ss_pred hhcCchhhhhhheeccCCC--CeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccc--eEEEEEEecceEEE
Confidence 6778999999988888777 58999999999999533 344333332 134567777776644 78899999999887
Q ss_pred EEcC----CCceeEEecCCCCcEEEEEEccCCCEEEEeccCCCCCCeEEEEe-CCCCceeEEeecccccceeEEEEeCCC
Q 001477 526 WLYD----YLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWN-ESEGAIKRTYSGFRKRSLGVVQFDTTR 600 (1071)
Q Consensus 526 wd~~----~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd-~~~~~~~~~~~~~~~~~v~~~~~~~~~ 600 (1071)
+.+. ..........|...+..+-|+-...++++++. |..+ .|. .+.+..+..+.-... -....+.-.
T Consensus 95 fs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~----dk~~-~~hc~e~~~~lg~Y~~~~~--~t~~~~d~~- 166 (404)
T KOG1409|consen 95 FALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGK----DKQF-AWHCTESGNRLGGYNFETP--ASALQFDAL- 166 (404)
T ss_pred EEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEecc----ccce-EEEeeccCCcccceEeecc--CCCCceeeE-
Confidence 7543 33334456678889999999998999998875 3223 333 233332222111100 011111111
Q ss_pred CEEEEEeCCCcEEEEeCCC--CceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCh
Q 001477 601 NRFLAAGDEFQIKFWDMDN--MNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1071)
Q Consensus 601 ~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~ 664 (1071)
+.+.|...|.|..-.+.. -.++..+.+ +...+.++.|.+....+.+|..|..+.+||+...
T Consensus 167 -~~fvGd~~gqvt~lr~~~~~~~~i~~~~~--h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~ 229 (404)
T KOG1409|consen 167 -YAFVGDHSGQITMLKLEQNGCQLITTFNG--HTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGR 229 (404)
T ss_pred -EEEecccccceEEEEEeecCCceEEEEcC--cccceEEEEEcCCCcEEEeccccCceEEEeccCC
Confidence 444455666666655443 344555554 4558999999999999999999999999998654
No 279
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.10 E-value=6e-08 Score=119.95 Aligned_cols=260 Identities=10% Similarity=0.069 Sum_probs=162.5
Q ss_pred EEEEEecc-cchhhhccccceeEEEecccccCCCCCccceeecc-eeccCCCCCccccccCCCCCCCCCeEEEEEecCCc
Q 001477 776 VRLIYTNS-GLSLLALASNAVHKLWKWQRTERNPSGKATANVAP-QLWQPPSGTLMTNDINESKPTEESAACIALSKNDS 853 (1071)
Q Consensus 776 ~~l~~s~~-g~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~h~~~~v~~v~~s~d~~ 853 (1071)
..++++++ |...++-..++.|++||.... ....... -......|..-. .+ -.....+++++++.
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~-------~i~~ig~~g~~G~~dG~~~~------a~-f~~P~GIavd~~gn 636 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGN-------FIVQIGSTGEEGLRDGSFED------AT-FNRPQGLAYNAKKN 636 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCC-------EEEEEccCCCcCCCCCchhc------cc-cCCCcEEEEeCCCC
Confidence 45778775 555566666788888875432 1110000 000001111100 01 33467899999988
Q ss_pred EEEEEe--CCeEEEEECCCCeEEEEEeCC-----------------CCCeEEEEEcCCCCCEEEEEeCCCeEEEEEccCC
Q 001477 854 YVMSAS--GGKVSLFNMMTFKVMTMFMSP-----------------PPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD 914 (1071)
Q Consensus 854 ~la~~~--dg~i~vwd~~~~~~~~~~~~~-----------------~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~ 914 (1071)
.|++++ ++.|+++|..++.. .++.+. -.....++|+|+++.++++.+.++.|++||..++
T Consensus 637 ~LYVaDt~n~~Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g 715 (1057)
T PLN02919 637 LLYVADTENHALREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDG 715 (1057)
T ss_pred EEEEEeCCCceEEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCC
Confidence 777766 57899999877653 333210 1124679999966677777778899999999877
Q ss_pred eEEEEecCc---------------CCCeeEEEEcCCCCE-EEEEeCCCcEEEEECCCCceeeeee--------ecCC---
Q 001477 915 EVKTKLKGH---------------QNRITGLAFSPTLNA-LVSSGADAQLCMWSIDKWEKLKSRF--------IQAP--- 967 (1071)
Q Consensus 915 ~~~~~l~~h---------------~~~v~~l~~s~d~~~-l~s~~~d~~v~vWd~~~~~~~~~~~--------~~~~--- 967 (1071)
... .+.+. -.....|+++||+++ +++.+.++.|++||+.++....... ....
T Consensus 716 ~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~ 794 (1057)
T PLN02919 716 VTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDH 794 (1057)
T ss_pred eEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCC
Confidence 542 22111 123567999999984 4555667899999998765321000 0000
Q ss_pred CC--CCCCCCCceEEEEccCCCEEEE-EECCeEEEEeCCCCceeecCCC-----------CCCCCCeeEEEEecCCcEEE
Q 001477 968 AG--RQSPLVGETKVQFHNDQTHLLV-VHESQISVYDSKLECSRSWSPK-----------DALPAPISSAIYSCDGLLVY 1033 (1071)
Q Consensus 968 ~~--~~~~~~~v~~~~~s~dg~~l~~-~~d~~i~vwd~~~~~~~~~~~~-----------~~h~~~v~~~~~s~dg~~l~ 1033 (1071)
.+ ..........++++++|..+++ ..++.|++||.+...+..+... .+.-..+..+++++||++++
T Consensus 795 dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyV 874 (1057)
T PLN02919 795 DGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFV 874 (1057)
T ss_pred CCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEE
Confidence 00 0001123568999999987666 4688999999955554433221 11223678999999999999
Q ss_pred EEeCCCeEEEEEcCCCeE
Q 001477 1034 AGFCDGAIGVFDAETLRF 1051 (1071)
Q Consensus 1034 t~~~Dg~i~vwd~~~~~~ 1051 (1071)
+-+.+++|++||+.+++.
T Consensus 875 aDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 875 ADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred EECCCCEEEEEECCCCcc
Confidence 989999999999999875
No 280
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.08 E-value=2.1e-07 Score=104.17 Aligned_cols=306 Identities=13% Similarity=0.083 Sum_probs=181.4
Q ss_pred cEEEEEecCCeEEEEEcCCCceeEEecCCCCcEEEEEEccCCCEEEEeccCCCCCCeEEEEeCCCCceeEEeecccccce
Q 001477 512 QFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSL 591 (1071)
Q Consensus 512 ~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~v 591 (1071)
..+++++.++.+..+|..+++................ .++..++.++. ++.++.+|..+|+.+........ ..
T Consensus 66 ~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~--v~~~~v~v~~~----~g~l~ald~~tG~~~W~~~~~~~-~~ 138 (377)
T TIGR03300 66 GKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVG--ADGGLVFVGTE----KGEVIALDAEDGKELWRAKLSSE-VL 138 (377)
T ss_pred CEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceE--EcCCEEEEEcC----CCEEEEEECCCCcEeeeeccCce-ee
Confidence 6888889999999999998888776655443222222 24566666653 77899999999998877654322 11
Q ss_pred eEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCC---cceEEEcCCCCEEEEEeCCCcEEEEEcCChhhhh
Q 001477 592 GVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPA---SPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLL 668 (1071)
Q Consensus 592 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~ 668 (1071)
..... .+..++.++.+|.|+.||.++++.+........... ...... .+..++.+..+|.+..+|..++.. .
T Consensus 139 ~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~-~ 213 (377)
T TIGR03300 139 SPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQP-L 213 (377)
T ss_pred cCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCE-e
Confidence 11112 245777788899999999999998877654321100 011111 124677777788888888776621 1
Q ss_pred hhhcCCccccccCCCCCCCCCCccccccCCCCccccccCCCCCCCCCCCCcccccccCCCCcccccccccccccccCccc
Q 001477 669 RMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIK 748 (1071)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 748 (1071)
T Consensus 214 -------------------------------------------------------------------------------- 213 (377)
T TIGR03300 214 -------------------------------------------------------------------------------- 213 (377)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeccCCCCCcccceeeecCCCcCCCceEEEEEecccchhhhccccceeEEEecccccCCCCCccceeecceeccCCCCCc
Q 001477 749 SWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTL 828 (1071)
Q Consensus 749 ~w~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 828 (1071)
|..... .+.+. .+ .-++. +
T Consensus 214 -W~~~~~-------------------------~~~g~------~~-~~~~~----------------------~------ 232 (377)
T TIGR03300 214 -WEQRVA-------------------------LPKGR------TE-LERLV----------------------D------ 232 (377)
T ss_pred -eeeccc-------------------------cCCCC------Cc-hhhhh----------------------c------
Confidence 110000 00000 00 00000 0
Q ss_pred cccccCCCCCCCCCeEEEEEecCCcEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCCEEEEEeCCCeEE
Q 001477 829 MTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQ 907 (1071)
Q Consensus 829 ~~~~~~~~~h~~~~v~~v~~s~d~~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~ 907 (1071)
. . ..++ + .++ .+.+++ +|.+..||..+++.+..... ........ .+..+++++.||.++
T Consensus 233 ----~----~-~~p~----~-~~~-~vy~~~~~g~l~a~d~~tG~~~W~~~~--~~~~~p~~---~~~~vyv~~~~G~l~ 292 (377)
T TIGR03300 233 ----V----D-GDPV----V-DGG-QVYAVSYQGRVAALDLRSGRVLWKRDA--SSYQGPAV---DDNRLYVTDADGVVV 292 (377)
T ss_pred ----c----C-CccE----E-ECC-EEEEEEcCCEEEEEECCCCcEEEeecc--CCccCceE---eCCEEEEECCCCeEE
Confidence 0 0 0111 1 133 444444 89999999999988776652 12222333 345677788999999
Q ss_pred EEEccCCeEEEEecCcCC-CeeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeecCCCCCCCCCCCceEEEEccCC
Q 001477 908 IYNVRVDEVKTKLKGHQN-RITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQ 986 (1071)
Q Consensus 908 vwd~~~~~~~~~l~~h~~-~v~~l~~s~d~~~l~s~~~d~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg 986 (1071)
.+|..+++.+.......+ ...+... .+..+++++.+|.|.++|..+++.+....... ..+..--...++
T Consensus 293 ~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~--------~~~~~sp~~~~~ 362 (377)
T TIGR03300 293 ALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTDG--------SGIASPPVVVGD 362 (377)
T ss_pred EEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCC--------CccccCCEEECC
Confidence 999999987765532211 2222222 46788899999999999999998765433211 112222223356
Q ss_pred CEEEEEECCeEEEE
Q 001477 987 THLLVVHESQISVY 1000 (1071)
Q Consensus 987 ~~l~~~~d~~i~vw 1000 (1071)
++++.+.||.|..+
T Consensus 363 ~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 363 GLLVQTRDGDLYAF 376 (377)
T ss_pred EEEEEeCCceEEEe
Confidence 66666788888765
No 281
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.06 E-value=2.9e-07 Score=113.92 Aligned_cols=74 Identities=14% Similarity=0.128 Sum_probs=59.9
Q ss_pred eEEEEEcCCCCCEEEEEeCCCeEEEEEccCCeEEEEec-------------CcCCCeeEEEEcCCCCEEEEEeCCCcEEE
Q 001477 884 ATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLK-------------GHQNRITGLAFSPTLNALVSSGADAQLCM 950 (1071)
Q Consensus 884 i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~l~-------------~h~~~v~~l~~s~d~~~l~s~~~d~~v~v 950 (1071)
...+++++ +|+++++-+.+++|++||..++....... +.-.....|+++++|+++++.+.++.|++
T Consensus 806 P~Gvavd~-dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irv 884 (1057)
T PLN02919 806 PLGVLCAK-DGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRY 884 (1057)
T ss_pred CceeeEeC-CCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEE
Confidence 45889999 88888888899999999998887543221 12235678999999999999999999999
Q ss_pred EECCCCce
Q 001477 951 WSIDKWEK 958 (1071)
Q Consensus 951 Wd~~~~~~ 958 (1071)
||+.+++.
T Consensus 885 id~~~~~~ 892 (1057)
T PLN02919 885 LDLNKGEA 892 (1057)
T ss_pred EECCCCcc
Confidence 99998764
No 282
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.04 E-value=6e-08 Score=107.80 Aligned_cols=217 Identities=11% Similarity=0.010 Sum_probs=131.6
Q ss_pred CCccccCCccceeeEEeecCCCCeEEEEeecCCCeEEEEEcC---CCeEEEEecCCCcccccccceeecccccccchhhh
Q 001477 326 TPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTN---VGDISLWEVGSRERLAHKPFKVWDISAASMPLQNA 402 (1071)
Q Consensus 326 ~~~~~~~d~~~~~~~~~~~h~~~V~~~~fsp~g~~lla~gs~---dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~ 402 (1071)
.-.+|..|....+....+.. +.+....|||||+++++..+. +..|.++|+.+++...
T Consensus 168 ~~~l~~~d~dg~~~~~~~~~-~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~------------------- 227 (419)
T PRK04043 168 KSNIVLADYTLTYQKVIVKG-GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK------------------- 227 (419)
T ss_pred cceEEEECCCCCceeEEccC-CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE-------------------
Confidence 34445544443433333334 378899999999864443332 3578888998876432
Q ss_pred hcccCCCCeeEEEECCCCCEEEEEe-C--CCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCC--
Q 001477 403 LLNDAAISVNRCVWGPDGLMLGVAF-S--KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK-- 477 (1071)
Q Consensus 403 ~~~~h~~~v~~~~~spd~~~la~~~-~--dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~-- 477 (1071)
+....+......|||||+.|+... . +..|.++|+.++... .+..+........|+|||+.+++ +....+
T Consensus 228 -lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~----~LT~~~~~d~~p~~SPDG~~I~F-~Sdr~g~~ 301 (419)
T PRK04043 228 -IASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLT----QITNYPGIDVNGNFVEDDKRIVF-VSDRLGYP 301 (419)
T ss_pred -EecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEE----EcccCCCccCccEECCCCCEEEE-EECCCCCc
Confidence 223445566788999999877653 2 356888888776532 33334433455689999996333 332233
Q ss_pred cEEEEEccCCceeEEecCCCCCeEEEEecccCCccEEEEEecC---------CeEEEEEcCCCceeEEecCCCCcEEEEE
Q 001477 478 MIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAID---------GKIKAWLYDYLGSRVDYDAPGNWCTMMA 548 (1071)
Q Consensus 478 ~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d---------~~i~vwd~~~~~~~~~~~~~~~~i~~~~ 548 (1071)
.|.+.|+.+|+..+.... ... ...|+|++ +.++..+.. ..|.+.|++.+.... +... .......
T Consensus 302 ~Iy~~dl~~g~~~rlt~~-g~~--~~~~SPDG--~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~-LT~~-~~~~~p~ 374 (419)
T PRK04043 302 NIFMKKLNSGSVEQVVFH-GKN--NSSVSTYK--NYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR-LTAN-GVNQFPR 374 (419)
T ss_pred eEEEEECCCCCeEeCccC-CCc--CceECCCC--CEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE-CCCC-CCcCCeE
Confidence 688889888776443321 111 23788765 666555443 367788887765433 3322 2233588
Q ss_pred EccCCCEEEEeccCCCCCCeEEEEeCCC
Q 001477 549 YSADGTRLFSCGTSKEGESHLVEWNESE 576 (1071)
Q Consensus 549 ~s~~~~~l~~~~~~~d~~~~i~iwd~~~ 576 (1071)
|+|||+.++..... .+...+.+.++..
T Consensus 375 ~SPDG~~I~f~~~~-~~~~~L~~~~l~g 401 (419)
T PRK04043 375 FSSDGGSIMFIKYL-GNQSALGIIRLNY 401 (419)
T ss_pred ECCCCCEEEEEEcc-CCcEEEEEEecCC
Confidence 99999998877643 2344577777753
No 283
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.03 E-value=3.2e-09 Score=110.71 Aligned_cols=244 Identities=14% Similarity=0.180 Sum_probs=169.7
Q ss_pred cccCCCCeeEEEECCCCCEEEEEeCCCeEEEEEecCCC-cc---ceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcE
Q 001477 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTG-EL---RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMI 479 (1071)
Q Consensus 404 ~~~h~~~v~~~~~spd~~~la~~~~dg~i~iwd~~~~~-~~---~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i 479 (1071)
+.||...|..++--.+.+.+++++.|.+|++|.++... .+ ....++..|..+|.++.|..+-+ .+++ .|+.|
T Consensus 731 f~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr--~i~S--cD~gi 806 (1034)
T KOG4190|consen 731 FTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR--SIAS--CDGGI 806 (1034)
T ss_pred ccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc--eeee--ccCcc
Confidence 78999999999888888899999999999999987532 22 23447789999999999999887 5554 48899
Q ss_pred EEEEccCCceeEEecC--CCCCeEEEEecccCCccEEEEE-ecCCeEEEEEcCCCceeEEe-----cCCCCcEEEEEEcc
Q 001477 480 KVWDVVAGRKQYTFEG--HEAPVYSVCPHHKESIQFIFST-AIDGKIKAWLYDYLGSRVDY-----DAPGNWCTMMAYSA 551 (1071)
Q Consensus 480 ~iwd~~~~~~~~~~~~--h~~~v~~i~~~~~~~~~~l~s~-~~d~~i~vwd~~~~~~~~~~-----~~~~~~i~~~~~s~ 551 (1071)
++||.--|+.+..+.. ..+.+..+...++-+..+++.| +...+|+++|.+..+-...+ .+....+.+++..+
T Consensus 807 HlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~ 886 (1034)
T KOG4190|consen 807 HLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVAD 886 (1034)
T ss_pred eeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEecc
Confidence 9999988887653321 1222223332344344555555 77899999999887665443 34456789999999
Q ss_pred CCCEEEEeccCCCCCCeEEEEeCCCCceeEEeecccccceeEEEEeCCCCEEEEEeCCCcEEE-EeCCCCceeEEEecCC
Q 001477 552 DGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKF-WDMDNMNMLTTVDADG 630 (1071)
Q Consensus 552 ~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i-wd~~~~~~~~~~~~~~ 630 (1071)
.|++++++-. +|.|.+.|.++|+.+.......- ....++ .|..+.++....|.++.+ |..-.+......+.+.
T Consensus 887 ~GN~lAa~LS----nGci~~LDaR~G~vINswrpmec-dllqla-apsdq~L~~saldHslaVnWhaldgimh~q~kppp 960 (1034)
T KOG4190|consen 887 KGNKLAAALS----NGCIAILDARNGKVINSWRPMEC-DLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDKPPP 960 (1034)
T ss_pred CcchhhHHhc----CCcEEEEecCCCceeccCCcccc-hhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccCCCC
Confidence 9999998765 78899999999998876654332 111121 345566777778888888 9887776555544322
Q ss_pred CCCCcceEEEcCCCCEEEEEeCCCcEEEEEc
Q 001477 631 GLPASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (1071)
Q Consensus 631 ~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~ 661 (1071)
.... -...-|..++++...+.+.+|.-
T Consensus 961 epah----flqsvgpSLV~a~~Gn~lgVYad 987 (1034)
T KOG4190|consen 961 EPAH----FLQSVGPSLVTAQNGNILGVYAD 987 (1034)
T ss_pred cchh----hhhccCceeEEeccCcEEEEEec
Confidence 1100 01123667788877778888853
No 284
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.00 E-value=1.3e-07 Score=92.44 Aligned_cols=209 Identities=15% Similarity=0.169 Sum_probs=138.2
Q ss_pred EEEecCCcEEEEEeCCeEEEEECCCC--eEEEEEe---CCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEccCCeEEEEe
Q 001477 846 IALSKNDSYVMSASGGKVSLFNMMTF--KVMTMFM---SPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKL 920 (1071)
Q Consensus 846 v~~s~d~~~la~~~dg~i~vwd~~~~--~~~~~~~---~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~l 920 (1071)
++.+.||+.||+.-|..|.|=..++. ..+.+.. .....=..++||| |+.+||.+...|+|++||+...++...-
T Consensus 3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSp-D~tlLa~a~S~G~i~vfdl~g~~lf~I~ 81 (282)
T PF15492_consen 3 LALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSP-DCTLLAYAESTGTIRVFDLMGSELFVIP 81 (282)
T ss_pred eeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECC-CCcEEEEEcCCCeEEEEecccceeEEcC
Confidence 67789999999998888888766541 2223322 2334567899999 9999999999999999999875543211
Q ss_pred cCc------CCCeeEEEEcCC------CCEEEEEeCCCcEEEEECCCCc--e-eeeeeecCCCCCCCCCCCceEEEEccC
Q 001477 921 KGH------QNRITGLAFSPT------LNALVSSGADAQLCMWSIDKWE--K-LKSRFIQAPAGRQSPLVGETKVQFHND 985 (1071)
Q Consensus 921 ~~h------~~~v~~l~~s~d------~~~l~s~~~d~~v~vWd~~~~~--~-~~~~~~~~~~~~~~~~~~v~~~~~s~d 985 (1071)
.++ ...|..|.|-+- ..-|+...-+|.++=+-+..+. . ........... .+.+|.++.+.|.
T Consensus 82 p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~---yp~Gi~~~vy~p~ 158 (282)
T PF15492_consen 82 PAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSH---YPHGINSAVYHPK 158 (282)
T ss_pred cccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEeccc---CCCceeEEEEcCC
Confidence 111 345777777542 1245566677777777654321 1 11111111111 1268999999999
Q ss_pred CCEEEEEE-----C-------CeEEEEeC-CCCceeec--------------------CC------CCCCCCCeeEEEEe
Q 001477 986 QTHLLVVH-----E-------SQISVYDS-KLECSRSW--------------------SP------KDALPAPISSAIYS 1026 (1071)
Q Consensus 986 g~~l~~~~-----d-------~~i~vwd~-~~~~~~~~--------------------~~------~~~h~~~v~~~~~s 1026 (1071)
.++|++|+ + -.+..|.+ +....... .. .......|..|..|
T Consensus 159 h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlS 238 (282)
T PF15492_consen 159 HRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLS 238 (282)
T ss_pred CCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEEC
Confidence 99988852 1 14677776 32221110 00 00125678899999
Q ss_pred cCCcEEEEEeCCCeEEEEEcCCCeEEEEeCCC
Q 001477 1027 CDGLLVYAGFCDGAIGVFDAETLRFRCRIGPS 1058 (1071)
Q Consensus 1027 ~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~ 1058 (1071)
|||+.||+...+|.|.+|++++.++++.....
T Consensus 239 Pdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~ 270 (282)
T PF15492_consen 239 PDGSLLACIHFSGSLSLWEIPSLRLQRSWKQD 270 (282)
T ss_pred CCCCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence 99999999999999999999999998876543
No 285
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.95 E-value=2.9e-07 Score=102.47 Aligned_cols=191 Identities=10% Similarity=0.080 Sum_probs=125.1
Q ss_pred CeEEEEEecCCcE-EEEEe-C---CeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCCEEEE-EeCC--CeEEEEEccC
Q 001477 842 SAACIALSKNDSY-VMSAS-G---GKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAI-GMED--SSVQIYNVRV 913 (1071)
Q Consensus 842 ~v~~v~~s~d~~~-la~~~-d---g~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~-g~~d--g~v~vwd~~~ 913 (1071)
......|||||+. ++..+ + ..|.++|+.+++...... ..+......||| ||+.|+. .+.+ ..|+++|+.+
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SP-DG~~la~~~~~~g~~~Iy~~dl~~ 266 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSK-DGSKLLLTMAPKGQPDIYLYDTNT 266 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECC-CCCEEEEEEccCCCcEEEEEECCC
Confidence 5778899999985 66554 3 459999998887654433 455567788999 6765554 4334 4688889888
Q ss_pred CeEEEEecCcCCCeeEEEEcCCCCEEEEEeC-CC--cEEEEECCCCceeeeeeecCCCCCCCCCCCceEEEEccCCCEEE
Q 001477 914 DEVKTKLKGHQNRITGLAFSPTLNALVSSGA-DA--QLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLL 990 (1071)
Q Consensus 914 ~~~~~~l~~h~~~v~~l~~s~d~~~l~s~~~-d~--~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~ 990 (1071)
++. ..+..+.+......|+|||+.|+-.+. .+ .|.+.|+.+++..+. . ..+. ....|||||++|+
T Consensus 267 g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rl---t-~~g~-------~~~~~SPDG~~Ia 334 (419)
T PRK04043 267 KTL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQV---V-FHGK-------NNSSVSTYKNYIV 334 (419)
T ss_pred CcE-EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeC---c-cCCC-------cCceECCCCCEEE
Confidence 764 445544443456789999997776653 33 588888888764321 1 1111 1248999999998
Q ss_pred EEE-C---------CeEEEEeCCCCceeecCCCCCCCCCeeEEEEecCCcEEEEEeCCC---eEEEEEcCCCe
Q 001477 991 VVH-E---------SQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDG---AIGVFDAETLR 1050 (1071)
Q Consensus 991 ~~~-d---------~~i~vwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~t~~~Dg---~i~vwd~~~~~ 1050 (1071)
... . ..|.+.|+.+.....+... .......|||||+.|+..+.++ .+.+.+++...
T Consensus 335 ~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~----~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~ 403 (419)
T PRK04043 335 YSSRETNNEFGKNTFNLYLISTNSDYIRRLTAN----GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNK 403 (419)
T ss_pred EEEcCCCcccCCCCcEEEEEECCCCCeEECCCC----CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCCe
Confidence 742 2 2678888855555555432 1233588999999887555432 36777776543
No 286
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.94 E-value=5e-09 Score=124.30 Aligned_cols=200 Identities=14% Similarity=0.233 Sum_probs=160.5
Q ss_pred ccCCCCeeEEEECCCCCEEEEEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEc
Q 001477 405 NDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDV 484 (1071)
Q Consensus 405 ~~h~~~v~~~~~spd~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~ 484 (1071)
+.+-..|.++.=.|...+.++|+.||.|++|....++.+....+. |. ..|+.+.|+.+|. .+..+..||.+.+|.+
T Consensus 2205 k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~-g~-s~vtr~~f~~qGn--k~~i~d~dg~l~l~q~ 2280 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTA-GN-SRVTRSRFNHQGN--KFGIVDGDGDLSLWQA 2280 (2439)
T ss_pred ecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeecc-Cc-chhhhhhhcccCC--ceeeeccCCceeeccc
Confidence 345567888888888899999999999999999998877654442 33 7899999999999 6888888999999996
Q ss_pred cCCceeEEecCCCCCeEEEEecccCCccEEEEEe---cCCeEEEEEcCCCce-eEEecCCCCcEEEEEEccCCCEEEEec
Q 001477 485 VAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA---IDGKIKAWLYDYLGS-RVDYDAPGNWCTMMAYSADGTRLFSCG 560 (1071)
Q Consensus 485 ~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~---~d~~i~vwd~~~~~~-~~~~~~~~~~i~~~~~s~~~~~l~~~~ 560 (1071)
. .++....+.|......+.|.. ..+++++ .++.+.+||.-.... -.....|.+.++++++.|....+++|+
T Consensus 2281 ~-pk~~~s~qchnk~~~Df~Fi~----s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisgg 2355 (2439)
T KOG1064|consen 2281 S-PKPYTSWQCHNKALSDFRFIG----SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGG 2355 (2439)
T ss_pred C-CcceeccccCCccccceeeee----hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecC
Confidence 5 667777788988888888864 3456554 477899999654433 233478999999999999999999998
Q ss_pred cCCCCCCeEEEEeCCCCceeEEeecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEec
Q 001477 561 TSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA 628 (1071)
Q Consensus 561 ~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 628 (1071)
. +|.|++||++..+.+++++. +. ...++++|+..|.++||++.....+..+..
T Consensus 2356 r----~G~v~l~D~rqrql~h~~~~----------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2356 R----KGEVCLFDIRQRQLRHTFQA----------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred C----cCcEEEeehHHHHHHHHhhh----------hh-hhheeeccCcccceEEEEccccchhhcCch
Confidence 5 77799999998877766654 33 457899999999999999998877777653
No 287
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.92 E-value=5.9e-09 Score=123.74 Aligned_cols=226 Identities=13% Similarity=0.163 Sum_probs=168.4
Q ss_pred CCEEEEEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccCCceeEEecC-CCC
Q 001477 420 GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG-HEA 498 (1071)
Q Consensus 420 ~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-h~~ 498 (1071)
++.......++...-|..+.+.. .+..+-..|.++.=+|... +.+||+.||.|++|....++.+..++. ...
T Consensus 2180 s~~~~~~n~~~~~~tq~~~~~~~-----~~k~~v~~v~r~~sHp~~~--~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s 2252 (2439)
T KOG1064|consen 2180 SNRFTPSNLPWLGSTQTSRGASV-----MIKHPVENVRRMTSHPSDP--YYLTGSQDGSVRMFEWGHGQQVVCFRTAGNS 2252 (2439)
T ss_pred cccCCcccCCccccceeccccee-----EeecccCceeeecCCCCCc--eEEecCCCceEEEEeccCCCeEEEeeccCcc
Confidence 34444444556566666554432 2233455688888888777 789999999999999999998887753 347
Q ss_pred CeEEEEecccCCccEEEEEecCCeEEEEEcCCCceeEEecCCCCcEEEEEEccCCCEEEEeccCCCCCCeEEEEeCCCCc
Q 001477 499 PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA 578 (1071)
Q Consensus 499 ~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~ 578 (1071)
.|+.+.|+.. |+.+..+..||.+.+|... .........|......+.|-. ..+++++.+.| ++.+.+||.--..
T Consensus 2253 ~vtr~~f~~q--Gnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d-~~n~~lwDtl~~~ 2326 (2439)
T KOG1064|consen 2253 RVTRSRFNHQ--GNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSD-NRNVCLWDTLLPP 2326 (2439)
T ss_pred hhhhhhhccc--CCceeeeccCCceeecccC-CcceeccccCCccccceeeee--hhhhccccCCC-CCcccchhcccCc
Confidence 8888888864 4889999999999999877 555566777888888888876 67777776655 6779999965322
Q ss_pred e-eEEeecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCcEE
Q 001477 579 I-KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIK 657 (1071)
Q Consensus 579 ~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~ 657 (1071)
. -.....|.. .++++++.|..+.+++||.+|.|++||++..++...++. +. ...++++|+..|.++
T Consensus 2327 ~~s~v~~~H~~-gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~-----------~~-~~~~f~~~ss~g~ik 2393 (2439)
T KOG1064|consen 2327 MNSLVHTCHDG-GATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA-----------LD-TREYFVTGSSEGNIK 2393 (2439)
T ss_pred ccceeeeecCC-CceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh-----------hh-hhheeeccCcccceE
Confidence 1 111255655 899999999999999999999999999998877766643 33 466899999999999
Q ss_pred EEEcCChhhhhhhhc
Q 001477 658 ILANSDGVRLLRMLE 672 (1071)
Q Consensus 658 iw~~~~~~~~~~~~~ 672 (1071)
||++... .++..+.
T Consensus 2394 Iw~~s~~-~ll~~~p 2407 (2439)
T KOG1064|consen 2394 IWRLSEF-GLLHTFP 2407 (2439)
T ss_pred EEEcccc-chhhcCc
Confidence 9999776 4554443
No 288
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.90 E-value=3.3e-08 Score=107.25 Aligned_cols=293 Identities=10% Similarity=0.176 Sum_probs=189.0
Q ss_pred EeecCCCCeEEEEeecCCCeEEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhhhcccC--CCCeeEEEECC
Q 001477 341 RTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDA--AISVNRCVWGP 418 (1071)
Q Consensus 341 ~~~~h~~~V~~~~fsp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h--~~~v~~~~~sp 418 (1071)
..++-.+++.++..+|.|+. +|.++.-|. .+-|+...-.... .--| .-.|-.+.|||
T Consensus 19 lsl~v~~~~~a~si~p~grd-i~lAsr~gl-~i~dld~p~~ppr-------------------~l~h~tpw~vad~qws~ 77 (1081)
T KOG0309|consen 19 LSLKVDGGFNAVSINPSGRD-IVLASRQGL-YIIDLDDPFTPPR-------------------WLHHITPWQVADVQWSP 77 (1081)
T ss_pred eEEEecCcccceeeccccch-hhhhhhcCe-EEEeccCCCCCce-------------------eeeccCcchhcceeccc
Confidence 34445678999999999985 566665553 4446543221110 0112 22466778887
Q ss_pred CCC---EEEEEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccCCc-eeEEec
Q 001477 419 DGL---MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR-KQYTFE 494 (1071)
Q Consensus 419 d~~---~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~ 494 (1071)
... ++++. ......+|++.....-.....+.+|...|+.+.|.|.... ++++++.|..+..||+++.. +++.+.
T Consensus 78 h~a~~~wiVst-s~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pd-Vlatcsvdt~vh~wd~rSp~~p~ys~~ 155 (1081)
T KOG0309|consen 78 HPAKPYWIVST-SNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPD-VLATCSVDTYVHAWDMRSPHRPFYSTS 155 (1081)
T ss_pred CCCCceeEEec-CcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCc-ceeeccccccceeeeccCCCcceeeee
Confidence 533 44444 4445678988654433334467799999999999998877 89999999999999998854 556665
Q ss_pred CCCCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCceeE-EecCCCCcEEEEEEccCC-CEEEEeccCCCCCCeEEEE
Q 001477 495 GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV-DYDAPGNWCTMMAYSADG-TRLFSCGTSKEGESHLVEW 572 (1071)
Q Consensus 495 ~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~-~~~~~~~~i~~~~~s~~~-~~l~~~~~~~d~~~~i~iw 572 (1071)
.-...-..++|+... ..+.+.+..+.|++||++.+.... .++++...|+.+.|..-- ..+.+++ .|++|..|
T Consensus 156 ~w~s~asqVkwnyk~--p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~----~d~tvkfw 229 (1081)
T KOG0309|consen 156 SWRSAASQVKWNYKD--PNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSS----NDGTVKFW 229 (1081)
T ss_pred cccccCceeeecccC--cchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccC----CCCceeee
Confidence 556667788888754 345556677889999999877644 667777788888886532 2344443 48899999
Q ss_pred eCCCCceeEEeecccccceeEEEEeCCCCEEEEEe--CCCcEEE---------EeCCC-CceeEEEecCCCCCCcceEEE
Q 001477 573 NESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG--DEFQIKF---------WDMDN-MNMLTTVDADGGLPASPRLRF 640 (1071)
Q Consensus 573 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~i---------wd~~~-~~~~~~~~~~~~~~~v~~~~~ 640 (1071)
|..............+.+|..-++.|-|.-.++-- .+..+.+ |+..+ ..++..+.+|.. .|....|
T Consensus 230 ~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D--~V~eFlW 307 (1081)
T KOG0309|consen 230 DYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDD--VVLEFLW 307 (1081)
T ss_pred cccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcch--HHHHHhh
Confidence 98754433322222333566666777654433311 1123333 43333 346777776654 4554444
Q ss_pred cCC----------CCEEEEEeCCCcEEEEEcCCh
Q 001477 641 NKE----------GSLLAVTTSDNGIKILANSDG 664 (1071)
Q Consensus 641 s~~----------~~~l~~~~~dg~v~iw~~~~~ 664 (1071)
-.. .-.|++-+.|.++++|.+.+.
T Consensus 308 R~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~~ 341 (1081)
T KOG0309|consen 308 RKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDSQ 341 (1081)
T ss_pred hhcccccCCCCccceeEEEeecCCceEeeeccHH
Confidence 332 237999999999999998754
No 289
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.88 E-value=1.5e-08 Score=103.08 Aligned_cols=167 Identities=14% Similarity=0.156 Sum_probs=111.4
Q ss_pred CCeEEEEEecCCcEEEEEe-CCeEEEEECCCC----eEEEEEeC--CCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEccC
Q 001477 841 ESAACIALSKNDSYVMSAS-GGKVSLFNMMTF----KVMTMFMS--PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV 913 (1071)
Q Consensus 841 ~~v~~v~~s~d~~~la~~~-dg~i~vwd~~~~----~~~~~~~~--~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~ 913 (1071)
.....+..+++++++|++. +....++++... ++...... ....++.+..+. .....-.+++...+.+|....
T Consensus 63 ~a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~-sv~v~dkagD~~~~di~s~~~ 141 (390)
T KOG3914|consen 63 LAPALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDT-SVLVADKAGDVYSFDILSADS 141 (390)
T ss_pred ccccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccc-eEEEEeecCCceeeeeecccc
Confidence 3445567788999999987 556656665533 22222222 222344444433 222223344556677777666
Q ss_pred CeEEEEecCcCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeecCCCCCCCCCCCceEEEEccCCCEEEEEE
Q 001477 914 DEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVH 993 (1071)
Q Consensus 914 ~~~~~~l~~h~~~v~~l~~s~d~~~l~s~~~d~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~ 993 (1071)
+.+ ..+-||-+-++.|+||||+++++++..|..|++-....--.+.
T Consensus 142 ~~~-~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Ie--------------------------------- 187 (390)
T KOG3914|consen 142 GRC-EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIE--------------------------------- 187 (390)
T ss_pred cCc-chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchh---------------------------------
Confidence 544 3455899999999999999999999999999987665511111
Q ss_pred CCeEEEEeCCCCceeecCCCCCCCCCeeEEEEecCCcEEEEEeCCCeEEEEEcCCCeEEEEeCCCcc
Q 001477 994 ESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAY 1060 (1071)
Q Consensus 994 d~~i~vwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~ 1060 (1071)
.+ .-||..-|..++.-++ ..|++||.|++|++||+.+|+.+..+..++.
T Consensus 188 ---------------sf--clGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~~sgk~L~t~dl~s~ 236 (390)
T KOG3914|consen 188 ---------------SF--CLGHKEFVSTISLTDN-YLLLSGSGDKTLRLWDITSGKLLDTCDLSSL 236 (390)
T ss_pred ---------------hh--ccccHhheeeeeeccC-ceeeecCCCCcEEEEecccCCcccccchhHh
Confidence 11 1356888999998654 5689999999999999999999977765433
No 290
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.87 E-value=2.7e-07 Score=88.33 Aligned_cols=148 Identities=9% Similarity=-0.035 Sum_probs=109.5
Q ss_pred eeEEEECCCCCEEEEEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccCCcee
Q 001477 411 VNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ 490 (1071)
Q Consensus 411 v~~~~~spd~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~ 490 (1071)
+.++++|+|++++++.+....|..|.+..................-.+..|+.... .+|++..||++.|||++.....
T Consensus 161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~--~FAv~~Qdg~~~I~DVR~~~tp 238 (344)
T KOG4532|consen 161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDL--QFAVVFQDGTCAIYDVRNMATP 238 (344)
T ss_pred eeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcc--eEEEEecCCcEEEEEecccccc
Confidence 88999999999999999999999999987554332222333444556888998887 7999999999999999875433
Q ss_pred E-----EecCCCCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCceeEEecCCC--------CcEEEEEEccCCCEEE
Q 001477 491 Y-----TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPG--------NWCTMMAYSADGTRLF 557 (1071)
Q Consensus 491 ~-----~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~--------~~i~~~~~s~~~~~l~ 557 (1071)
. +-..|.+.+..+.|++.+.-++|+..-.-+.+.+.|+++......+.... ..|....|+.++..+.
T Consensus 239 m~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~ 318 (344)
T KOG4532|consen 239 MAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESND 318 (344)
T ss_pred hhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccc
Confidence 2 23358999999999987666777777778899999999877654332221 2366666666666555
Q ss_pred Eec
Q 001477 558 SCG 560 (1071)
Q Consensus 558 ~~~ 560 (1071)
+..
T Consensus 319 v~~ 321 (344)
T KOG4532|consen 319 VKN 321 (344)
T ss_pred ccc
Confidence 543
No 291
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.87 E-value=1.8e-09 Score=118.97 Aligned_cols=216 Identities=14% Similarity=0.222 Sum_probs=160.0
Q ss_pred cccCCCCeeEEEECCCCCEEEEEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCC-cEEEE
Q 001477 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK-MIKVW 482 (1071)
Q Consensus 404 ~~~h~~~v~~~~~spd~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~-~i~iw 482 (1071)
+..|+...+|++||-+.+.|+.|+..|.|++|++.+|.... ....|..+|+.+.=+.||.. .|.+.+... -..+|
T Consensus 1097 frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~---s~ncH~SavT~vePs~dgs~-~Ltsss~S~PlsaLW 1172 (1516)
T KOG1832|consen 1097 FRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEE---SVNCHQSAVTLVEPSVDGST-QLTSSSSSSPLSALW 1172 (1516)
T ss_pred hhccccceeeEEeecCCceEEeeeccceEEEEEccCccccc---cccccccccccccccCCcce-eeeeccccCchHHHh
Confidence 67889999999999999999999999999999999998776 66789999999999999984 333333333 57799
Q ss_pred EccC-CceeEEecCCCCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCceeEEe-cC---CCCcEEEEEEccCCCEEE
Q 001477 483 DVVA-GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY-DA---PGNWCTMMAYSADGTRLF 557 (1071)
Q Consensus 483 d~~~-~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~-~~---~~~~i~~~~~s~~~~~l~ 557 (1071)
++.+ +...++|.+ -.++.|+... ..-+.|..-....+||+.+......+ .. ....-++..|+|+.+.++
T Consensus 1173 ~~~s~~~~~Hsf~e----d~~vkFsn~~--q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl 1246 (1516)
T KOG1832|consen 1173 DASSTGGPRHSFDE----DKAVKFSNSL--QFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL 1246 (1516)
T ss_pred ccccccCccccccc----cceeehhhhH--HHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe
Confidence 9864 555556543 3456666542 34455555567889999988776542 21 122347888999998887
Q ss_pred EeccCCCCCCeEEEEeCCCCceeEEeecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcce
Q 001477 558 SCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPR 637 (1071)
Q Consensus 558 ~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 637 (1071)
--+ .+||.+..+.++.|..... ...-.|+|.|..++..++ |||+++.+.+...+.-.. ..
T Consensus 1247 ndG---------vLWDvR~~~aIh~FD~ft~--~~~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~Ldq----c~ 1306 (1516)
T KOG1832|consen 1247 NDG---------VLWDVRIPEAIHRFDQFTD--YGGGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPSLDQ----CA 1306 (1516)
T ss_pred eCc---------eeeeeccHHHHhhhhhhee--cccccccCCCceEEeech-----hhhhHHHHHHhcCccccc----eE
Confidence 533 4799998888887776553 223569999999998775 899999988877654322 56
Q ss_pred EEEcCCCCEEEE
Q 001477 638 LRFNKEGSLLAV 649 (1071)
Q Consensus 638 ~~~s~~~~~l~~ 649 (1071)
+.|+..|..++.
T Consensus 1307 VtFNstG~VmYa 1318 (1516)
T KOG1832|consen 1307 VTFNSTGDVMYA 1318 (1516)
T ss_pred EEeccCccchhh
Confidence 788888876654
No 292
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.81 E-value=1.1e-08 Score=106.93 Aligned_cols=213 Identities=13% Similarity=0.174 Sum_probs=156.4
Q ss_pred cCCCCCCCCCeEEEEEecCCcEEEEEe-CCeEEEEECCC-------CeEEEEEeCCCCCeEEEEEcCCCCCEEEEEeCCC
Q 001477 833 INESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMT-------FKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDS 904 (1071)
Q Consensus 833 ~~~~~h~~~~v~~v~~s~d~~~la~~~-dg~i~vwd~~~-------~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg 904 (1071)
+.| | ...|..++--.+...+++++ |.+|++|.++. ..+..++..|..+|..+.|-. +.+.++++ ||
T Consensus 731 f~G--H-~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~-~lr~i~Sc--D~ 804 (1034)
T KOG4190|consen 731 FTG--H-QEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLA-DLRSIASC--DG 804 (1034)
T ss_pred ccC--c-HHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeee-ccceeeec--cC
Confidence 444 7 88888886655666677777 99999999863 346777889999999999999 78888754 89
Q ss_pred eEEEEEccCCeEEEEec--CcCCCeeEEEEcC--CCCEEE-EEeCCCcEEEEECCCCceeeeeeecCCCCCCCCCCCceE
Q 001477 905 SVQIYNVRVDEVKTKLK--GHQNRITGLAFSP--TLNALV-SSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETK 979 (1071)
Q Consensus 905 ~v~vwd~~~~~~~~~l~--~h~~~v~~l~~s~--d~~~l~-s~~~d~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 979 (1071)
-|++||.--++++.... ...+.++.+..-+ |...+. -|+...+|+++|.+..+...........++. .-+++
T Consensus 805 giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pn---a~~R~ 881 (1034)
T KOG4190|consen 805 GIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPN---ALTRA 881 (1034)
T ss_pred cceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCc---hheeE
Confidence 99999987777655322 1122233333333 344443 3478889999999998877655555444443 56899
Q ss_pred EEEccCCCEEEEE-ECCeEEEEeC-CCCceeecCCCCCCCCCeeEEEEecCCcEEEEEeCCCeEEE-EEcCCCeEEEEeC
Q 001477 980 VQFHNDQTHLLVV-HESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGV-FDAETLRFRCRIG 1056 (1071)
Q Consensus 980 ~~~s~dg~~l~~~-~d~~i~vwd~-~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~t~~~Dg~i~v-wd~~~~~~~~~~~ 1056 (1071)
++..+.|.+++++ +.|.|.+.|. +++.+..|.+.. -....++ .|.++.|+....|.++.+ |..-.|.+..+..
T Consensus 882 iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpme---cdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~k 957 (1034)
T KOG4190|consen 882 IAVADKGNKLAAALSNGCIAILDARNGKVINSWRPME---CDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDK 957 (1034)
T ss_pred EEeccCcchhhHHhcCCcEEEEecCCCceeccCCccc---chhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccC
Confidence 9999999999996 8999999999 777788777653 2333344 477788898888999999 9998888887766
Q ss_pred CC
Q 001477 1057 PS 1058 (1071)
Q Consensus 1057 ~~ 1058 (1071)
++
T Consensus 958 pp 959 (1034)
T KOG4190|consen 958 PP 959 (1034)
T ss_pred CC
Confidence 43
No 293
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.79 E-value=3.6e-06 Score=94.54 Aligned_cols=145 Identities=11% Similarity=0.086 Sum_probs=89.7
Q ss_pred cEEEEEecCCeEEEEEcCCCceeEEecCCCC--cEE-----EEEEc--cCCCEEEEeccCCCCCCeEEEEeCCCCceeEE
Q 001477 512 QFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN--WCT-----MMAYS--ADGTRLFSCGTSKEGESHLVEWNESEGAIKRT 582 (1071)
Q Consensus 512 ~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~--~i~-----~~~~s--~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~ 582 (1071)
..+++++.++.+..+|..+++.......... ... .+.-. -++..++.++. ++.++.+|.++|+.+.+
T Consensus 70 ~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~----~g~l~ald~~tG~~~W~ 145 (394)
T PRK11138 70 NKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSE----KGQVYALNAEDGEVAWQ 145 (394)
T ss_pred CEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcC----CCEEEEEECCCCCCccc
Confidence 5677777778888888887777665543321 000 00001 13445555543 67899999999998887
Q ss_pred eecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCC---cceEEEcCCCCEEEEEeCCCcEEEE
Q 001477 583 YSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPA---SPRLRFNKEGSLLAVTTSDNGIKIL 659 (1071)
Q Consensus 583 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---v~~~~~s~~~~~l~~~~~dg~v~iw 659 (1071)
...... ...+... .+..++.+..++.|+.+|.++|+.+........... ...... .+..++.++.+|.+..+
T Consensus 146 ~~~~~~-~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~~~~g~v~a~ 220 (394)
T PRK11138 146 TKVAGE-ALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AFGGAIVGGDNGRVSAV 220 (394)
T ss_pred ccCCCc-eecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--ECCEEEEEcCCCEEEEE
Confidence 765432 1111122 245677788899999999999999888764321000 011111 23467778889999999
Q ss_pred EcCChh
Q 001477 660 ANSDGV 665 (1071)
Q Consensus 660 ~~~~~~ 665 (1071)
|..+++
T Consensus 221 d~~~G~ 226 (394)
T PRK11138 221 LMEQGQ 226 (394)
T ss_pred EccCCh
Confidence 998883
No 294
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.77 E-value=2.9e-06 Score=86.27 Aligned_cols=209 Identities=16% Similarity=0.162 Sum_probs=147.0
Q ss_pred eEEEEEec-CCcEEEEEe-CC-eEEEEECCCCeEEEEEeCCCCCe--EEEEEcCCCCCEEEEEeC-----CCeEEEEEcc
Q 001477 843 AACIALSK-NDSYVMSAS-GG-KVSLFNMMTFKVMTMFMSPPPAA--TFLAFHPQDNNIIAIGME-----DSSVQIYNVR 912 (1071)
Q Consensus 843 v~~v~~s~-d~~~la~~~-dg-~i~vwd~~~~~~~~~~~~~~~~i--~~l~~sp~~~~~la~g~~-----dg~v~vwd~~ 912 (1071)
.-.++.+| ++..+|.+. .| ...+||..+++....+....+.- -.-+||+ ||++|++.-. .|.|-|||..
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~-dG~~LytTEnd~~~g~G~IgVyd~~ 85 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSP-DGRLLYTTENDYETGRGVIGVYDAA 85 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcC-CCCEEEEeccccCCCcEEEEEEECc
Confidence 34688899 566677776 44 58899999999998887655542 2478999 8998887644 4789999999
Q ss_pred -CCeEEEEecCcCCCeeEEEEcCCCCEEEEEeC------------------CCcEEEEECCCCceeeeeeecCCCCCCCC
Q 001477 913 -VDEVKTKLKGHQNRITGLAFSPTLNALVSSGA------------------DAQLCMWSIDKWEKLKSRFIQAPAGRQSP 973 (1071)
Q Consensus 913 -~~~~~~~l~~h~~~v~~l~~s~d~~~l~s~~~------------------d~~v~vWd~~~~~~~~~~~~~~~~~~~~~ 973 (1071)
+.+.+.++..|.-.--.+.+.|||+.|+.+-. +-.+..-|..+|+.+....+......
T Consensus 86 ~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~--- 162 (305)
T PF07433_consen 86 RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQ--- 162 (305)
T ss_pred CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccc---
Confidence 77889999888777778999999987776531 12466667778876655444221111
Q ss_pred CCCceEEEEccCCCEEEEEE---C-----CeEEEEeCCCCceeecCCC----CCCCCCeeEEEEecCCcEEEEEe-CCCe
Q 001477 974 LVGETKVQFHNDQTHLLVVH---E-----SQISVYDSKLECSRSWSPK----DALPAPISSAIYSCDGLLVYAGF-CDGA 1040 (1071)
Q Consensus 974 ~~~v~~~~~s~dg~~l~~~~---d-----~~i~vwd~~~~~~~~~~~~----~~h~~~v~~~~~s~dg~~l~t~~-~Dg~ 1040 (1071)
..++.+++.++|..++... + --|.+++-.. .+..+... ..-.+.+-+|+++++|.++++.+ .-++
T Consensus 163 -lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~-~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~ 240 (305)
T PF07433_consen 163 -LSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG-ALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGR 240 (305)
T ss_pred -cceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC-cceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCE
Confidence 5689999999998877642 1 1244554421 12222111 11257899999999999876554 5678
Q ss_pred EEEEEcCCCeEEEEeCC
Q 001477 1041 IGVFDAETLRFRCRIGP 1057 (1071)
Q Consensus 1041 i~vwd~~~~~~~~~~~~ 1057 (1071)
+.+||..+++++.....
T Consensus 241 ~~~~d~~tg~~~~~~~l 257 (305)
T PF07433_consen 241 VAVWDAATGRLLGSVPL 257 (305)
T ss_pred EEEEECCCCCEeecccc
Confidence 99999999999986644
No 295
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.76 E-value=8.7e-08 Score=97.56 Aligned_cols=164 Identities=15% Similarity=0.103 Sum_probs=113.0
Q ss_pred CeEEEEeecCCCeEEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeEEEECCCCCEEEEE-
Q 001477 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA- 426 (1071)
Q Consensus 348 ~V~~~~fsp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~la~~- 426 (1071)
.+..+..+|+++ ++|++..+....++++..... ..+.++.. .-...-+++.|-.+......+
T Consensus 64 a~~~~~~s~~~~-llAv~~~~K~~~~f~~~~~~~----~~kl~~~~------------~v~~~~~ai~~~~~~~sv~v~d 126 (390)
T KOG3914|consen 64 APALVLTSDSGR-LVAVATSSKQRAVFDYRENPK----GAKLLDVS------------CVPKRPTAISFIREDTSVLVAD 126 (390)
T ss_pred cccccccCCCce-EEEEEeCCCceEEEEEecCCC----cceeeeEe------------ecccCcceeeeeeccceEEEEe
Confidence 556677788886 788887777777777655432 11122210 011123334444444444443
Q ss_pred --eCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccCCceeEEec-CCCCCeEEE
Q 001477 427 --FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE-GHEAPVYSV 503 (1071)
Q Consensus 427 --~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~h~~~v~~i 503 (1071)
+....+.+|....+... .+-||-..+++++|+||++ +++++..|..|++-....-..+..|. ||..-|..+
T Consensus 127 kagD~~~~di~s~~~~~~~----~~lGhvSml~dVavS~D~~--~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~i 200 (390)
T KOG3914|consen 127 KAGDVYSFDILSADSGRCE----PILGHVSMLLDVAVSPDDQ--FIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTI 200 (390)
T ss_pred ecCCceeeeeecccccCcc----hhhhhhhhhheeeecCCCC--EEEEecCCceEEEEecCcccchhhhccccHhheeee
Confidence 44556666666654332 3458999999999999998 89999999999998876655555543 699999999
Q ss_pred EecccCCccEEEEEecCCeEEEEEcCCCceeEEe
Q 001477 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY 537 (1071)
Q Consensus 504 ~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~ 537 (1071)
+..++ ..|+++|.|+++++||+.+++....+
T Consensus 201 sl~~~---~~LlS~sGD~tlr~Wd~~sgk~L~t~ 231 (390)
T KOG3914|consen 201 SLTDN---YLLLSGSGDKTLRLWDITSGKLLDTC 231 (390)
T ss_pred eeccC---ceeeecCCCCcEEEEecccCCccccc
Confidence 98754 57999999999999999988876433
No 296
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.73 E-value=3.7e-06 Score=93.09 Aligned_cols=112 Identities=13% Similarity=0.351 Sum_probs=84.8
Q ss_pred CeEEEEeecCCCeEEEEEc----CCCeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeEEEECCCCCEE
Q 001477 348 NVMSMDFHPQQQTILLVGT----NVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLML 423 (1071)
Q Consensus 348 ~V~~~~fsp~g~~lla~gs----~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~l 423 (1071)
.-+-..|+|..+ ++|+++ ..|.|.||- .+|++...-+ . .-.+++++|.|..-.|
T Consensus 17 vsti~SWHPseP-lfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-----------------~---P~hatSLCWHpe~~vL 74 (1416)
T KOG3617|consen 17 VSTISSWHPSEP-LFAVASFSPERGGSVTIFA-DTGEPQRDVT-----------------Y---PVHATSLCWHPEEFVL 74 (1416)
T ss_pred cccccccCCCCc-eeEEEEecCCCCceEEEEe-cCCCCCcccc-----------------c---ceehhhhccChHHHHH
Confidence 445568999998 777775 457888874 4565433211 1 1136679999999999
Q ss_pred EEEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccC
Q 001477 424 GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA 486 (1071)
Q Consensus 424 a~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~ 486 (1071)
|.|-.-|.+.+|...+.+.-. ....|..+|.-+.||++|. .++|+..-|.|.+|....
T Consensus 75 a~gwe~g~~~v~~~~~~e~ht---v~~th~a~i~~l~wS~~G~--~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 75 AQGWEMGVSDVQKTNTTETHT---VVETHPAPIQGLDWSHDGT--VLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred hhccccceeEEEecCCceeee---eccCCCCCceeEEecCCCC--eEEEcCCCceeEEEEeee
Confidence 999889999999988754322 3346999999999999999 899999999999998753
No 297
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.72 E-value=1.4e-05 Score=78.59 Aligned_cols=247 Identities=9% Similarity=0.074 Sum_probs=136.7
Q ss_pred EEEeecCCCeEEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeEEEECCCCCEEEEEeCCC
Q 001477 351 SMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKH 430 (1071)
Q Consensus 351 ~~~fsp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~la~~~~dg 430 (1071)
-++.+++|+ +||. -.|..|.|=..++.-.-...+. .+.+...-.=.-++||||+..||.+...|
T Consensus 2 ~~~~~~~Gk-~lAi-~qd~~iEiRsa~Ddf~si~~kc--------------qVpkD~~PQWRkl~WSpD~tlLa~a~S~G 65 (282)
T PF15492_consen 2 HLALSSDGK-LLAI-LQDQCIEIRSAKDDFSSIIGKC--------------QVPKDPNPQWRKLAWSPDCTLLAYAESTG 65 (282)
T ss_pred ceeecCCCc-EEEE-EeccEEEEEeccCCchheeEEE--------------ecCCCCCchheEEEECCCCcEEEEEcCCC
Confidence 467788997 6664 4577887766554311110000 11222333456799999999999999999
Q ss_pred eEEEEEecCCCcccee--eEee-cccCCEEEEEEecCC-----CceEEEEEeCCCcEEEEEccC-----CceeEEec--C
Q 001477 431 IVHLYTYNPTGELRQH--LEID-AHVGGVNDIAFAHPN-----KQLCIVTCGDDKMIKVWDVVA-----GRKQYTFE--G 495 (1071)
Q Consensus 431 ~i~iwd~~~~~~~~~~--~~~~-~h~~~v~~~~~s~d~-----~~~~l~s~~~d~~i~iwd~~~-----~~~~~~~~--~ 495 (1071)
+|+++|+.+....... ..+. .-..+|..|.|.+-. .. .|+.-..+|.++-+-+.. .+..++|. .
T Consensus 66 ~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~-ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~ 144 (282)
T PF15492_consen 66 TIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSY-ELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSS 144 (282)
T ss_pred eEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccce-eEEEEeccceeeeEEEEcccCCcceeeEEEEecc
Confidence 9999999874432110 0111 123467777775532 11 345556677777665532 23333433 2
Q ss_pred -CCCCeEEEEecccCCccEEEEEecCCe-EEEEEcCCCceeEEecCCCCcEEEEEEccCCCEEEEeccCCCCC----CeE
Q 001477 496 -HEAPVYSVCPHHKESIQFIFSTAIDGK-IKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGE----SHL 569 (1071)
Q Consensus 496 -h~~~v~~i~~~~~~~~~~l~s~~~d~~-i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~----~~i 569 (1071)
+...|.++.++|.. ++|+.|+.... -..+ ......+++-..-.+..+........++. .+.
T Consensus 145 ~yp~Gi~~~vy~p~h--~LLlVgG~~~~~~~~s-----------~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~ 211 (282)
T PF15492_consen 145 HYPHGINSAVYHPKH--RLLLVGGCEQNQDGMS-----------KASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRR 211 (282)
T ss_pred cCCCceeEEEEcCCC--CEEEEeccCCCCCccc-----------cccccCceEEEEcCCCCcEEEccccCcccccccccc
Confidence 46789999999876 56666653222 0000 01111222222222222211111000000 012
Q ss_pred EEEeCCCCceeEEeecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEec
Q 001477 570 VEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA 628 (1071)
Q Consensus 570 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 628 (1071)
.+|.+-+.+... ..+.....|..+..||||+.|++...+|.|.+|++.+-+....+..
T Consensus 212 ~~~~~~~~~~fs-~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~ 269 (282)
T PF15492_consen 212 GLLRIPSFKFFS-RQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQ 269 (282)
T ss_pred ceeeccceeeee-ccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccch
Confidence 334333222211 2233344789999999999999999999999999998777766644
No 298
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.71 E-value=2.8e-06 Score=81.57 Aligned_cols=231 Identities=10% Similarity=0.002 Sum_probs=152.2
Q ss_pred CCEEEEEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccCCceeEEecCCCC-
Q 001477 420 GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEA- 498 (1071)
Q Consensus 420 ~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~- 498 (1071)
-.+||.|+..|...+|...+.+.... ....|...|+-+.=.-|.+. -+..++.|.++++.++.-+..-... |..
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~--~cd~snn~v~~~~r~cd~~~-~~~i~sndht~k~~~~~~~s~~~~~--h~~~ 158 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLY--QCDVSNNDVTLVKRYCDLKF-PLNIASNDHTGKTMVVSGDSNKFAV--HNQN 158 (344)
T ss_pred ccEEEeccccceeeeecccCccccee--eecccccchhhhhhhccccc-ceeeccCCcceeEEEEecCccccee--eccc
Confidence 45899999999999999987654321 22234443332222222222 4667888999999987655433222 333
Q ss_pred -CeEEEEecccCCccEEEEEecCCeEEEEEcCCCceeE---EecCCCCcEEEEEEccCCCEEEEeccCCCCCCeEEEEeC
Q 001477 499 -PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV---DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNE 574 (1071)
Q Consensus 499 -~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~---~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~ 574 (1071)
.+.++++++++ .++++.+....|..|.++...... ........-.+..|+.....++++.. |+.+.|||+
T Consensus 159 ~~~ns~~~snd~--~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Q----dg~~~I~DV 232 (344)
T KOG4532|consen 159 LTQNSLHYSNDP--SWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQ----DGTCAIYDV 232 (344)
T ss_pred cceeeeEEcCCC--ceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEec----CCcEEEEEe
Confidence 37788887754 899999999999999988765533 22333445567889999999999875 889999999
Q ss_pred CCCceeE----EeecccccceeEEEEeCCCC--EEEEEeCCCcEEEEeCCCCceeEEEecCCCC------CCcceEEEcC
Q 001477 575 SEGAIKR----TYSGFRKRSLGVVQFDTTRN--RFLAAGDEFQIKFWDMDNMNMLTTVDADGGL------PASPRLRFNK 642 (1071)
Q Consensus 575 ~~~~~~~----~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~------~~v~~~~~s~ 642 (1071)
+...... .-+.++.+.++.+.|++.|. +|+..-.-+.+.+-|++++...+.+...... ..+....|+.
T Consensus 233 R~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~ 312 (344)
T KOG4532|consen 233 RNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNN 312 (344)
T ss_pred cccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccC
Confidence 8644222 22334555899999998763 4555545678999999998876665433221 3466677777
Q ss_pred CCCEEEEEeCCCcEEEEEcC
Q 001477 643 EGSLLAVTTSDNGIKILANS 662 (1071)
Q Consensus 643 ~~~~l~~~~~dg~v~iw~~~ 662 (1071)
++..+.+.+++ .+.-|++.
T Consensus 313 ~n~s~~v~~e~-~~ae~ni~ 331 (344)
T KOG4532|consen 313 ENESNDVKNEL-QGAEYNIL 331 (344)
T ss_pred CCcccccccch-hhheeecc
Confidence 77766666554 34445544
No 299
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.71 E-value=8.3e-06 Score=91.63 Aligned_cols=187 Identities=13% Similarity=0.073 Sum_probs=114.4
Q ss_pred EEEEEeCCCcEEEEEccCCceeEEecCCCC-Ce-E-----EEEecccCCccEEEEEecCCeEEEEEcCCCceeEEecCCC
Q 001477 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEA-PV-Y-----SVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPG 541 (1071)
Q Consensus 469 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~-~v-~-----~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~ 541 (1071)
.++.++.++.+.-+|..+|+.+........ .. . .+.-.|.-.+..++.++.++.+..+|.++++.........
T Consensus 71 ~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~ 150 (394)
T PRK11138 71 KVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKVAG 150 (394)
T ss_pred EEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccccCCC
Confidence 467777888999999999998766542210 00 0 0000111123577888899999999999998887766543
Q ss_pred CcEEEEEEccCCCEEEEeccCCCCCCeEEEEeCCCCceeEEeecccccce-----eEEEEeCCCCEEEEEeCCCcEEEEe
Q 001477 542 NWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSL-----GVVQFDTTRNRFLAAGDEFQIKFWD 616 (1071)
Q Consensus 542 ~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~l~~~~~dg~i~iwd 616 (1071)
....+... .+ ..++.+. .++.++.+|..+|+.+..+..... .+ .+... .+..++.++.+|.+...|
T Consensus 151 ~~~ssP~v-~~-~~v~v~~----~~g~l~ald~~tG~~~W~~~~~~~-~~~~~~~~sP~v--~~~~v~~~~~~g~v~a~d 221 (394)
T PRK11138 151 EALSRPVV-SD-GLVLVHT----SNGMLQALNESDGAVKWTVNLDVP-SLTLRGESAPAT--AFGGAIVGGDNGRVSAVL 221 (394)
T ss_pred ceecCCEE-EC-CEEEEEC----CCCEEEEEEccCCCEeeeecCCCC-cccccCCCCCEE--ECCEEEEEcCCCEEEEEE
Confidence 22211122 13 3444443 367899999999999887764321 11 11111 134577778899999999
Q ss_pred CCCCceeEEEecCCCC--CC---cceEEEcC--CCCEEEEEeCCCcEEEEEcCCh
Q 001477 617 MDNMNMLTTVDADGGL--PA---SPRLRFNK--EGSLLAVTTSDNGIKILANSDG 664 (1071)
Q Consensus 617 ~~~~~~~~~~~~~~~~--~~---v~~~~~s~--~~~~l~~~~~dg~v~iw~~~~~ 664 (1071)
..+|+.+......... .. ...+.-+| .+..+++++.+|.+..+|..++
T Consensus 222 ~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG 276 (394)
T PRK11138 222 MEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSG 276 (394)
T ss_pred ccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCC
Confidence 9999877665321110 00 01111222 3556777788899999998877
No 300
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.70 E-value=3e-07 Score=89.67 Aligned_cols=248 Identities=15% Similarity=0.246 Sum_probs=164.5
Q ss_pred CCCCeeEEEECCCCCEEEEEeCCCeEEEEEecCCC--ccceeeEeeccc------------CCEEEEEEecCCCceEEEE
Q 001477 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTG--ELRQHLEIDAHV------------GGVNDIAFAHPNKQLCIVT 472 (1071)
Q Consensus 407 h~~~v~~~~~spd~~~la~~~~dg~i~iwd~~~~~--~~~~~~~~~~h~------------~~v~~~~~s~d~~~~~l~s 472 (1071)
....|+++.|...|.||++|...|.|.+|.-+... ..+-..++++|. ..|..+.|..++.+..++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 44579999999999999999999999999765432 122222455554 3578888887766557777
Q ss_pred EeCCCcEEEEEccCCc-------------------e------------------e-----EEe-cCCCCCeEEEEecccC
Q 001477 473 CGDDKMIKVWDVVAGR-------------------K------------------Q-----YTF-EGHEAPVYSVCPHHKE 509 (1071)
Q Consensus 473 ~~~d~~i~iwd~~~~~-------------------~------------------~-----~~~-~~h~~~v~~i~~~~~~ 509 (1071)
.+.|++|++|.+.... + + +.. ..|...++++.++.+.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 8889999999875431 0 0 001 2466778888887653
Q ss_pred CccEEEEEecCCeEEEEEcCCCceeE---EecCCC-----CcEEEEEEccCCCEEEEeccCCCCCCeEEEEeCCCCcee-
Q 001477 510 SIQFIFSTAIDGKIKAWLYDYLGSRV---DYDAPG-----NWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIK- 580 (1071)
Q Consensus 510 ~~~~l~s~~~d~~i~vwd~~~~~~~~---~~~~~~-----~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~- 580 (1071)
..++ .+.|-.|-+|+++.....+ .++.+. .-|++..|+|....++.-+. ..|.|++-|++.....
T Consensus 185 --et~l-SaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSs---SkG~Ikl~DlRq~alcd 258 (460)
T COG5170 185 --ETLL-SADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSS---SKGEIKLNDLRQSALCD 258 (460)
T ss_pred --heee-eccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEec---CCCcEEehhhhhhhhcc
Confidence 4444 4568889999987654433 223332 25788889996544443222 2677999999843211
Q ss_pred ---EE----e--------ecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCC-CceeEEEecCCC----------CCC
Q 001477 581 ---RT----Y--------SGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN-MNMLTTVDADGG----------LPA 634 (1071)
Q Consensus 581 ---~~----~--------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~----------~~~ 634 (1071)
.. + .+... .|..+.|+++|+++++-+. -+|++||++. ..++.+++.|.. ...
T Consensus 259 n~~klfe~~~D~v~~~ff~eivs-SISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDa 336 (460)
T COG5170 259 NSKKLFELTIDGVDVDFFEEIVS-SISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDA 336 (460)
T ss_pred CchhhhhhccCcccchhHHHHhh-hhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccc
Confidence 11 1 11111 5778899999999988765 4899999986 456666644321 011
Q ss_pred c---ceEEEcCCCCEEEEEeCCCcEEEEEcC
Q 001477 635 S---PRLRFNKEGSLLAVTTSDNGIKILANS 662 (1071)
Q Consensus 635 v---~~~~~s~~~~~l~~~~~dg~v~iw~~~ 662 (1071)
| ..+.|+.|...+.+|+..+..-++-..
T Consensus 337 ifdkFeisfSgd~~~v~sgsy~NNfgiyp~~ 367 (460)
T COG5170 337 IFDKFEISFSGDDKHVLSGSYSNNFGIYPTD 367 (460)
T ss_pred eeeeEEEEecCCcccccccccccceeeeccc
Confidence 2 457888899999999998888888643
No 301
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.70 E-value=4.3e-06 Score=92.62 Aligned_cols=514 Identities=13% Similarity=0.126 Sum_probs=263.2
Q ss_pred eEEEECCCCCEEEEEeC----CCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccCC
Q 001477 412 NRCVWGPDGLMLGVAFS----KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG 487 (1071)
Q Consensus 412 ~~~~~spd~~~la~~~~----dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~ 487 (1071)
+-.+|.|...++|+++. .|.|.||- ++|+.-+. .+.. -.+++++|+|..- +|+.|-.-|.+.+|...+.
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~-Vt~P---~hatSLCWHpe~~--vLa~gwe~g~~~v~~~~~~ 91 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRD-VTYP---VHATSLCWHPEEF--VLAQGWEMGVSDVQKTNTT 91 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcc-cccc---eehhhhccChHHH--HHhhccccceeEEEecCCc
Confidence 34579999999888864 57888885 34443221 1222 2356799999876 7889989999999997776
Q ss_pred ceeEEecCCCCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCceeEEecC--C--CC--cEEEEEEccCCCEE---EE
Q 001477 488 RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA--P--GN--WCTMMAYSADGTRL---FS 558 (1071)
Q Consensus 488 ~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~--~--~~--~i~~~~~s~~~~~l---~~ 558 (1071)
+.-.....|..+|..+.|++++ ..++++..-|.+.+|.++..+....... | +. ...|...++++.-+ +-
T Consensus 92 e~htv~~th~a~i~~l~wS~~G--~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laK 169 (1416)
T KOG3617|consen 92 ETHTVVETHPAPIQGLDWSHDG--TVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAK 169 (1416)
T ss_pred eeeeeccCCCCCceeEEecCCC--CeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhhh
Confidence 6655566799999999999865 8999999999999998875443332111 1 11 33455566664321 11
Q ss_pred eccCCCCCC--eEEEEeCCCCceeEEeecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcc
Q 001477 559 CGTSKEGES--HLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASP 636 (1071)
Q Consensus 559 ~~~~~d~~~--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 636 (1071)
++..+|... ...-|..++.. +... -.-.|+|..++.++.+|+|+--|-. |+........ .-.
T Consensus 170 aaVtgDe~alD~~fnwk~~~a~--rs~~---------ksgv~~g~~F~~~~~~GtVyyvdq~-g~~~~V~k~d----S~v 233 (1416)
T KOG3617|consen 170 AAVTGDESALDEPFNWKESLAE--RSDE---------KSGVPKGTEFLFAGKSGTVYYVDQN-GRQRTVHKLD----SEV 233 (1416)
T ss_pred hhccCchhhhcccccCccchhh--cccc---------ccCCCCCcEEEEEcCCceEEEEcCC-CcEEEEEEcc----chH
Confidence 111112111 12222211111 1000 1124778888899999998877643 4444444332 123
Q ss_pred eEEEcCCCCEEEEEeCCCcEEEEEc-CChh---hhhhhhcCCccccccCCCCCCCCCCccccccCCCCccccccCCCCCC
Q 001477 637 RLRFNKEGSLLAVTTSDNGIKILAN-SDGV---RLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLER 712 (1071)
Q Consensus 637 ~~~~s~~~~~l~~~~~dg~v~iw~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 712 (1071)
.+-|.+....+++...+-.+.++-+ .+|. .....+.+..+..
T Consensus 234 QmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~Ggr---------------------------------- 279 (1416)
T KOG3617|consen 234 QMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGR---------------------------------- 279 (1416)
T ss_pred HHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCc----------------------------------
Confidence 4556665555555555555554443 2231 1111111111100
Q ss_pred CCCCCCcccccccCCCCccccccccccccccc-CccceeccCCCCCcccceeeecCCCcCCCceEEEEEecccchhhhcc
Q 001477 713 PDRGPPAVSISSLGTIDGSRLVDVKPRVAEDV-DKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALA 791 (1071)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~~~~ 791 (1071)
.|. ++++.. |-++ -. ...+......+.+++++..+..+.++.
T Consensus 280 ----------------------qGg-iA~sEssGvLr---~~-----------eKyg~e~ge~~~c~cY~~~~~~l~agt 322 (1416)
T KOG3617|consen 280 ----------------------QGG-IACSESSGVLR---KS-----------EKYGLELGEGILCMCYGEKEIRLWAGT 322 (1416)
T ss_pred ----------------------cCc-ccccccccccc---CC-----------cchhhhcCCceEEEEEeccceEEEecc
Confidence 000 111111 1000 00 001112456789999999999999999
Q ss_pred ccceeEEEecccccCCCCCccceeecceeccCCCCCccccccCCCCCCCCCeEEEEEecCCcEEEEEeCCeEEEEECC--
Q 001477 792 SNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMM-- 869 (1071)
Q Consensus 792 ~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~v~~s~d~~~la~~~dg~i~vwd~~-- 869 (1071)
..|.+.+|.-....+ .....+..|.+.+.... .+.|+.+.|.|-...+++-+-..+.+..-+
T Consensus 323 ~~gnv~~w~~v~~~f------~g~p~~d~w~l~~~~e~----------~g~I~~i~Wg~~k~~~avn~~~~v~ll~E~~l 386 (1416)
T KOG3617|consen 323 KEGNVTIWLDVNKGF------QGDPTIDVWTLNGKRES----------LGKISLIRWGPIKSTAAVNTEEDVVLLGENSL 386 (1416)
T ss_pred cCCcEEEeeecCccc------cCCCCcceEEecCchhh----------ccceEEEEeccccchhhhhhhhheeeeccCch
Confidence 999999996433222 12223456666544322 567889999986666555442222222111
Q ss_pred ----------------CCeEEEEEeCC------CCCeEEEEEcCCCCCEEEEEeCCCeEEEEEccCCeEEE--EecCcCC
Q 001477 870 ----------------TFKVMTMFMSP------PPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKT--KLKGHQN 925 (1071)
Q Consensus 870 ----------------~~~~~~~~~~~------~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~--~l~~h~~ 925 (1071)
+.++.+-+.|- .-++..++.+. ..| +.....+|..|++++.-.+. .......
T Consensus 387 ~~~h~~~~~A~q~ss~S~~L~hc~sGv~~~l~~~~~~~gi~l~e---~~l-vvwNgr~v~~y~lq~SG~la~~~~~tF~c 462 (1416)
T KOG3617|consen 387 TVKHRGKMAAIQTSSNSFTLLHCTSGVSQDLKLSIPSAGICLGE---KQL-VVWNGRTVVTYDLQTSGSLATIQCTTFSC 462 (1416)
T ss_pred HHHHhhhhHHhhhcCCceEEEeeccchhhhhhhccchhhheecc---ceE-EEEcCceEEEEEecccchhHHHhhhhhcc
Confidence 11122221111 11234444443 223 34566688888886331111 1111222
Q ss_pred CeeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeecCCCCCCCCCCCceEEEEccCCCEEEEEEC-CeEEEEeC--
Q 001477 926 RITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHE-SQISVYDS-- 1002 (1071)
Q Consensus 926 ~v~~l~~s~d~~~l~s~~~d~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d-~~i~vwd~-- 1002 (1071)
.-+++++.. .-+.+...|. |.+..+.. .......+....+. + +-..--|.++++..+ +.++-+|+
T Consensus 463 et~~la~~n--qN~ycies~~-Vfvrt~qG-tv~q~i~~seiEg~------~--~~ldi~g~~l~v~t~~~~~k~~dvsr 530 (1416)
T KOG3617|consen 463 ETTSLAIVN--QNLYCIESDK-VFVRTLQG-TVRQEISLSEIEGV------V--VLLDIMGELLIVQTVSTVAKRLDVSR 530 (1416)
T ss_pred ccchHhHhh--cceEEeccCc-EEEEecch-hhhhhccchhccCc------e--ehhhhccceeEEeehHHHHHHhhhhh
Confidence 233444432 2344444443 55554443 11111111222211 1 222334777777543 34445555
Q ss_pred -CCCceeecCCCC---CCCCCeeEEEEecCCcE--EEEEeCC----CeEEEEEcCCCeEEE
Q 001477 1003 -KLECSRSWSPKD---ALPAPISSAIYSCDGLL--VYAGFCD----GAIGVFDAETLRFRC 1053 (1071)
Q Consensus 1003 -~~~~~~~~~~~~---~h~~~v~~~~~s~dg~~--l~t~~~D----g~i~vwd~~~~~~~~ 1053 (1071)
..+.+..+...+ .-.+.++.+..+..|.. +..+..+ .++.+||++++++..
T Consensus 531 ~e~ka~~~~~s~~~~~d~~g~~~~~~c~ssgS~~~v~~a~~~~~pisTl~~~DFe~s~~~~ 591 (1416)
T KOG3617|consen 531 AELKAVSYFSSDRGMTDTQGYETQAECASSGSGRPVTAAARKMAPISTLFCWDFEQSRFQM 591 (1416)
T ss_pred hcccccccccccccccCCcCceEEEeeccCCCCcccchhhccCCCcceeEeeccchhhHHH
Confidence 222222221111 11456666666665553 3333333 469999998887543
No 302
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=1.2e-06 Score=90.13 Aligned_cols=213 Identities=11% Similarity=0.161 Sum_probs=145.3
Q ss_pred cccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccC--C-ceeEEecCCCCCeEEEEecccCCccEEEEEec-CCeEEEE
Q 001477 451 AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA--G-RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI-DGKIKAW 526 (1071)
Q Consensus 451 ~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~--~-~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~-d~~i~vw 526 (1071)
-|...|+.+.-+. .+ ++.+++.||.++.|--.. | +.+..+..|.+.|.+++.+.+ +..+.+.+. |..++++
T Consensus 7 mhrd~i~hv~~tk-a~--fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~d--g~L~~Sv~d~Dhs~Kvf 81 (558)
T KOG0882|consen 7 MHRDVITHVFPTK-AK--FIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYD--GWLFRSVEDPDHSVKVF 81 (558)
T ss_pred cccceeeeEeeeh-hh--eEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhcccc--ceeEeeccCcccceeEE
Confidence 3777777776554 34 799999999999997433 1 334556778888999988764 478888777 9999999
Q ss_pred EcCCCceeEEecCC--CCcEEEEEEcc-CCCEEEEeccCCCCCCeEEEEeCCCCc-eeEEeecccccceeEEEEeCCCCE
Q 001477 527 LYDYLGSRVDYDAP--GNWCTMMAYSA-DGTRLFSCGTSKEGESHLVEWNESEGA-IKRTYSGFRKRSLGVVQFDTTRNR 602 (1071)
Q Consensus 527 d~~~~~~~~~~~~~--~~~i~~~~~s~-~~~~l~~~~~~~d~~~~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~ 602 (1071)
|+.+-.....++.. .+.+..+ .++ |-..+++.+. -.++.+.++|-.... ...-+.+.+..+|..+.+.+.+..
T Consensus 82 DvEn~DminmiKL~~lPg~a~wv-~skGd~~s~IAVs~--~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds 158 (558)
T KOG0882|consen 82 DVENFDMINMIKLVDLPGFAEWV-TSKGDKISLIAVSL--FKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDS 158 (558)
T ss_pred EeeccchhhhcccccCCCceEEe-cCCCCeeeeEEeec--ccCCCcEEECCcCCcCccceecccccCceEEEEeeccccc
Confidence 98876554322221 2222221 122 1122233222 237779999977543 444455545558999999999999
Q ss_pred EEEEeCCCcEEEEeCCC------CceeEEEe-------cCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCChhhhhh
Q 001477 603 FLAAGDEFQIKFWDMDN------MNMLTTVD-------ADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLR 669 (1071)
Q Consensus 603 l~~~~~dg~i~iwd~~~------~~~~~~~~-------~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~ 669 (1071)
+++....|.|.-|.... .+....+. .........++.|+|+|..+.+-+.|..|++++..++ ++++
T Consensus 159 ~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtG-klvq 237 (558)
T KOG0882|consen 159 AVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTG-KLVQ 237 (558)
T ss_pred eeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccc-hhhh
Confidence 99999999999999873 11111111 1122345689999999999999999999999999999 6666
Q ss_pred hhc
Q 001477 670 MLE 672 (1071)
Q Consensus 670 ~~~ 672 (1071)
.+.
T Consensus 238 eiD 240 (558)
T KOG0882|consen 238 EID 240 (558)
T ss_pred hhh
Confidence 554
No 303
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.68 E-value=5.9e-07 Score=87.72 Aligned_cols=256 Identities=13% Similarity=0.166 Sum_probs=162.8
Q ss_pred CCCeEEEEeecCCCeEEEEEcCCCeEEEEecCCCc-ccc--cccceeecccccccchhhhhcccCCCCeeEEEECCCCC-
Q 001477 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRE-RLA--HKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGL- 421 (1071)
Q Consensus 346 ~~~V~~~~fsp~g~~lla~gs~dg~i~iwd~~~~~-~~~--~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd~~- 421 (1071)
.+.|+++.|...|. +|++|...|.|.++.-+... +.. ...|+..+..-.... --.-...|..+.|..++.
T Consensus 26 ad~ItaVefd~tg~-YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLk-----SleieEKin~I~w~~~t~r 99 (460)
T COG5170 26 ADKITAVEFDETGL-YLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLK-----SLEIEEKINAIEWFDDTGR 99 (460)
T ss_pred cceeeEEEeccccc-eEeecCCCceEEEeecccccccchhhhhhhcccccchhhhh-----hccHHHHhhheeeecCCCc
Confidence 45799999999997 79999999999999865432 111 011111111000000 001234688899987654
Q ss_pred -EEEEEeCCCeEEEEEecCCC-------------------cc------c--------------eeeEe-ecccCCEEEEE
Q 001477 422 -MLGVAFSKHIVHLYTYNPTG-------------------EL------R--------------QHLEI-DAHVGGVNDIA 460 (1071)
Q Consensus 422 -~la~~~~dg~i~iwd~~~~~-------------------~~------~--------------~~~~~-~~h~~~v~~~~ 460 (1071)
.+...+.|.+|++|.+.... .+ . +.... ..|.--|.++.
T Consensus 100 ~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS 179 (460)
T COG5170 100 NHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSIS 179 (460)
T ss_pred ceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeee
Confidence 45556699999999985430 00 0 00011 35777788999
Q ss_pred EecCCCceEEEEEeCCCcEEEEEccCCce---eEEecCCC-----CCeEEEEecccCCccEEEEEecCCeEEEEEcCCCc
Q 001477 461 FAHPNKQLCIVTCGDDKMIKVWDVVAGRK---QYTFEGHE-----APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLG 532 (1071)
Q Consensus 461 ~s~d~~~~~l~s~~~d~~i~iwd~~~~~~---~~~~~~h~-----~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~ 532 (1071)
|..|.+ .++++ .|-.|.+|++.-... +..++.|. .-|++..|+|... ..+.-.+..|.|++-|++...
T Consensus 180 ~NsD~e--t~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~c-n~fmYSsSkG~Ikl~DlRq~a 255 (460)
T COG5170 180 FNSDKE--TLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMC-NVFMYSSSKGEIKLNDLRQSA 255 (460)
T ss_pred ecCchh--eeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHc-ceEEEecCCCcEEehhhhhhh
Confidence 998887 45554 577899998764322 22333332 4577888988643 677788889999999998422
Q ss_pred e------eE--Ee--------cCCCCcEEEEEEccCCCEEEEeccCCCCCCeEEEEeCCCC-ceeEEeecccc-------
Q 001477 533 S------RV--DY--------DAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG-AIKRTYSGFRK------- 588 (1071)
Q Consensus 533 ~------~~--~~--------~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~-~~~~~~~~~~~------- 588 (1071)
. .. .+ ..-...|..+.|+++|+++++-. -.++.+||.+.. .++.++.-|..
T Consensus 256 lcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-----yltvkiwDvnm~k~pikTi~~h~~l~~~l~d 330 (460)
T COG5170 256 LCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-----YLTVKIWDVNMAKNPIKTIPMHCDLMDELND 330 (460)
T ss_pred hccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-----cceEEEEecccccCCceeechHHHHHHHHHh
Confidence 1 11 11 11233678899999999999864 456999999854 46666644421
Q ss_pred ----cce---eEEEEeCCCCEEEEEeCCCcEEEEe
Q 001477 589 ----RSL---GVVQFDTTRNRFLAAGDEFQIKFWD 616 (1071)
Q Consensus 589 ----~~v---~~~~~~~~~~~l~~~~~dg~i~iwd 616 (1071)
..| ..+.|+.+.+.+++|+.....-++-
T Consensus 331 ~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp 365 (460)
T COG5170 331 VYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYP 365 (460)
T ss_pred hhhccceeeeEEEEecCCcccccccccccceeeec
Confidence 112 2477888888899988777666654
No 304
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=98.66 E-value=0.0022 Score=73.84 Aligned_cols=594 Identities=11% Similarity=0.103 Sum_probs=279.3
Q ss_pred CCCCeEEEEeecCCCeEEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeEEEECCC----C
Q 001477 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD----G 420 (1071)
Q Consensus 345 h~~~V~~~~fsp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd----~ 420 (1071)
...-..|+..-++| +|++||.-|.=.+-.+.+-....++. ..++. + ..-++|..+..-.+ +
T Consensus 305 e~siassi~~L~ng--~lFvGS~~gdSqLi~L~~e~d~gsy~----------~ilet--~-~NLgPI~Dm~Vvd~d~q~q 369 (1096)
T KOG1897|consen 305 ETSIASSINYLDNG--VLFVGSRFGDSQLIKLNTEPDVGSYV----------VILET--F-VNLGPIVDMCVVDLDRQGQ 369 (1096)
T ss_pred CcchhhhhhcccCc--eEEEeccCCceeeEEccccCCCCchh----------hhhhh--c-ccccceeeEEEEeccccCC
Confidence 33445667777777 57889887766666665433221100 00010 1 13357777776542 2
Q ss_pred CEEEEEe---CCCeEEEEEecCCCccceeeEeecccCCEEEEE--EecCCCceEEEEEeCCCcEEEEEccCCceeEEecC
Q 001477 421 LMLGVAF---SKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIA--FAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG 495 (1071)
Q Consensus 421 ~~la~~~---~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~--~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 495 (1071)
..+++|+ .||++++..-.-+-.......+.| -..++.+. +.+.-.. +++.+-.+ .-++..+...-......+
T Consensus 370 ~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~~d~-ylvlsf~~-eTrvl~i~~e~ee~~~~g 446 (1096)
T KOG1897|consen 370 GQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPG-IKGMWSLKSMVDENYDN-YLVLSFIS-ETRVLNISEEVEETEDPG 446 (1096)
T ss_pred ceEEEEeCCCCCCcEEEEecccccceeeEeecCC-ccceeEeeccccccCCc-EEEEEecc-ceEEEEEccceEEecccc
Confidence 3555653 489999987544322222224445 44567776 4443332 34433322 333444322211111222
Q ss_pred CCCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCceeEEecCCCCcEEEEEEccCCCEEEEeccCCCCCCeEEEEeCC
Q 001477 496 HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES 575 (1071)
Q Consensus 496 h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~ 575 (1071)
.......+..+.-. ++.|+=. ....||+++-. .....+.... .++....+.+...++.++. ++.+...++.
T Consensus 447 f~~~~~Tif~S~i~-g~~lvQv-Ts~~iRl~ss~--~~~~~W~~p~-~~ti~~~~~n~sqVvvA~~----~~~l~y~~i~ 517 (1096)
T KOG1897|consen 447 FSTDEQTIFCSTIN-GNQLVQV-TSNSIRLVSSA--GLRSEWRPPG-KITIGVVSANASQVVVAGG----GLALFYLEIE 517 (1096)
T ss_pred ccccCceEEEEccC-CceEEEE-ecccEEEEcch--hhhhcccCCC-ceEEEEEeecceEEEEecC----ccEEEEEEee
Confidence 22223333322211 1222211 12345555433 1222222222 3344444455555655542 4456666666
Q ss_pred CCceeEEeecccccceeEEEEeCCC---C---EEEEEeCCCcEE-EEeCCCCceeEEE--ecCCCCCCcceEEEcCCCCE
Q 001477 576 EGAIKRTYSGFRKRSLGVVQFDTTR---N---RFLAAGDEFQIK-FWDMDNMNMLTTV--DADGGLPASPRLRFNKEGSL 646 (1071)
Q Consensus 576 ~~~~~~~~~~~~~~~v~~~~~~~~~---~---~l~~~~~dg~i~-iwd~~~~~~~~~~--~~~~~~~~v~~~~~s~~~~~ 646 (1071)
.+......+......|.|+.++|-| + +++.|..+..+. +.-..+...+... ....-...|.-..+-.|..+
T Consensus 518 ~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~y 597 (1096)
T KOG1897|consen 518 DGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHY 597 (1096)
T ss_pred ccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceE
Confidence 5553333333333378899998753 2 566666444433 3333344333332 22222233445556567889
Q ss_pred EEEEeCCCcEEEEEcCChhhhhhhhcCCccccccCCCCCCCCCCccccccCCCCccccccCCCCCCC-------C-CCCC
Q 001477 647 LAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERP-------D-RGPP 718 (1071)
Q Consensus 647 l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~-~~~~ 718 (1071)
|.++..||.+.-|.+....-.+...+.. ..+..+..++.+...+. ..+++.+.... + .-.|
T Consensus 598 LlvalgdG~l~~fv~d~~tg~lsd~Kk~----------~lGt~P~~Lr~f~sk~~-t~vfa~sdrP~viY~~n~kLv~sp 666 (1096)
T KOG1897|consen 598 LLVALGDGALLYFVLDINTGQLSDRKKV----------TLGTQPISLRTFSSKSR-TAVFALSDRPTVIYSSNGKLVYSP 666 (1096)
T ss_pred EEEEcCCceEEEEEEEcccceEcccccc----------ccCCCCcEEEEEeeCCc-eEEEEeCCCCEEEEecCCcEEEec
Confidence 9999999998776654331111111100 00111112222221111 11111111100 0 0000
Q ss_pred --cccccccCCCCcccccccccccccccCccceeccCCCCCcccceeeecCCCcCCCceEEEEEecccchhhhcccccee
Q 001477 719 --AVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVH 796 (1071)
Q Consensus 719 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~~~~~dg~v 796 (1071)
...+..+...... .-...++....+.+++..++...... .+. .|- ....+.+++.+....+.+.+.....
T Consensus 667 ls~kev~~~c~f~s~--a~~d~l~~~~~~~l~i~tid~iqkl~-irt--vpl---~~~prrI~~q~~sl~~~v~s~r~e~ 738 (1096)
T KOG1897|consen 667 LSLKEVNHMCPFNSD--AYPDSLASANGGALTIGTIDEIQKLH-IRT--VPL---GESPRRICYQESSLTFGVLSNRIES 738 (1096)
T ss_pred cchHHhhhhcccccc--cCCceEEEecCCceEEEEecchhhcc-eee--ecC---CCChhheEecccceEEEEEeccccc
Confidence 0000000011111 11122333444555555555422211 111 222 1234455555533323332221110
Q ss_pred EEEecccccCCCCCccceeecceeccCCCCCcccc-ccCCCCCCCCCeEEEEEecC-CcEEEEEe-----------CCeE
Q 001477 797 KLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTN-DINESKPTEESAACIALSKN-DSYVMSAS-----------GGKV 863 (1071)
Q Consensus 797 ~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~h~~~~v~~v~~s~d-~~~la~~~-----------dg~i 863 (1071)
.. + ..+.......++++|..+-+.+.. .+....- ...+.+..|..| +.++++|. .|.|
T Consensus 739 ~~------~--~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~-~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRI 809 (1096)
T KOG1897|consen 739 SA------E--YYGEEYEVSFLRVLDQNTFEVLSSHEFERNET-ALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRI 809 (1096)
T ss_pred ch------h--hcCCcceEEEEEEecCCceeEEeeccccccce-eeeeeeeeecCCCceEEEEEEEeeccCCCCcccceE
Confidence 00 0 012222223456777766554432 1111000 223334447777 78888873 2778
Q ss_pred EEEECCCCeEEEEEeC--CCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEccCCeEEEEecCcCCCeeEEEEcCCCCEEEE
Q 001477 864 SLFNMMTFKVMTMFMS--PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVS 941 (1071)
Q Consensus 864 ~vwd~~~~~~~~~~~~--~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~~~v~~l~~s~d~~~l~s 941 (1071)
.||.+...+.+..... -.+.+.++..- +|++||. -+..|++|++.+.+.+..-..|..++..+...-.|..++.
T Consensus 810 ivfe~~e~~~L~~v~e~~v~Gav~aL~~f--ngkllA~--In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~V 885 (1096)
T KOG1897|consen 810 IVFEFEELNSLELVAETVVKGAVYALVEF--NGKLLAG--INQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAV 885 (1096)
T ss_pred EEEEEecCCceeeeeeeeeccceeehhhh--CCeEEEe--cCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEE
Confidence 8988876433333322 22445555433 5677764 4678999999999777777778899999999999999999
Q ss_pred EeCCCcEEEEECCCCceeeeeeecCCCCCCCCCCCceEEEEccCCCEEEEEECCeEEEEeC
Q 001477 942 SGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDS 1002 (1071)
Q Consensus 942 ~~~d~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~ 1002 (1071)
|.--+.+.+-.....+-.-....+...+ ..++++.+-.+..++.+-.+|.+.+-..
T Consensus 886 gDlm~Sitll~y~~~eg~f~evArD~~p-----~Wmtaveil~~d~ylgae~~gNlf~v~~ 941 (1096)
T KOG1897|consen 886 GDLMRSITLLQYKGDEGNFEEVARDYNP-----NWMTAVEILDDDTYLGAENSGNLFTVRK 941 (1096)
T ss_pred eeccceEEEEEEeccCCceEEeehhhCc-----cceeeEEEecCceEEeecccccEEEEEe
Confidence 9977776665544433111111222211 5578888888888887766676665544
No 305
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.66 E-value=5.2e-07 Score=86.15 Aligned_cols=209 Identities=13% Similarity=0.204 Sum_probs=125.0
Q ss_pred eEEEEeecCCCeEEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeEEEECCCCCEEEEEeC
Q 001477 349 VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFS 428 (1071)
Q Consensus 349 V~~~~fsp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~la~~~~ 428 (1071)
|+.+.|+-+- .|+++..++.+......++.+.. .|+-..... +...+..|.++-.+-+.+-.++.+++++.
T Consensus 39 ~~~~~~v~~~--~lf~~e~~~~~ss~g~~r~~~~~-----~~~rt~~i~--~~~~~a~~sep~p~~~~s~~~t~V~~~~~ 109 (319)
T KOG4714|consen 39 LSKVSLSAEY--ILFTGETSSQIISLGKGRGRCIS-----LWERDDGID--PFKVLAKNSEIDPNDACTMTDNRVCIGYA 109 (319)
T ss_pred EEEeechhhh--eeecccchhheeeeccceEEEec-----hhhcccCcC--ceeeeeccCCCCCcccccccCCceEecCC
Confidence 6777777664 56777777777666655443332 111111111 11112345554444455556788999999
Q ss_pred CCeEEEEEecCCCccceeeEee-cccCCEEEEEEecCCCceEEEEEe-----CCCcEEEEEccCCceeEEecCCCCCeEE
Q 001477 429 KHIVHLYTYNPTGELRQHLEID-AHVGGVNDIAFAHPNKQLCIVTCG-----DDKMIKVWDVVAGRKQYTFEGHEAPVYS 502 (1071)
Q Consensus 429 dg~i~iwd~~~~~~~~~~~~~~-~h~~~v~~~~~s~d~~~~~l~s~~-----~d~~i~iwd~~~~~~~~~~~~h~~~v~~ 502 (1071)
||.+.+.+.+.-..+. .... .|.+. -+.+....++ .+.+++ .-+..+.|+++..+.+..-..-...|.+
T Consensus 110 dg~~~v~s~~~~~~~~--~~i~~~~~~~-as~~~~~~~~--~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~ 184 (319)
T KOG4714|consen 110 DGSLAVFSTDKDLALM--SRIPSIHSGS-ASRKICRHGN--SILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTA 184 (319)
T ss_pred CceEEEEechHHHhhh--hhcccccccc-cccceeeccc--EEecCCcceEeeccceeeecccccccccccccccccchh
Confidence 9999999987621111 1111 12211 1222233344 233322 1224456665443322111112334899
Q ss_pred EEecccCCccEEEEEecCCeEEEEEcCCCceeE-EecCCCCcEEEEEEcc-CCCEEEEeccCCCCCCeEEEEeCCC
Q 001477 503 VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV-DYDAPGNWCTMMAYSA-DGTRLFSCGTSKEGESHLVEWNESE 576 (1071)
Q Consensus 503 i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~-~~~~~~~~i~~~~~s~-~~~~l~~~~~~~d~~~~i~iwd~~~ 576 (1071)
++-+|... +.+++|+.||.+-+||.++...+. .+..|..++..+-|+| ++..|++++. +|.+..||..+
T Consensus 185 l~~hp~qq-~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~se----dGslw~wdas~ 255 (319)
T KOG4714|consen 185 LCSHPAQQ-HLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSE----DGSLWHWDAST 255 (319)
T ss_pred hhCCcccc-cEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecC----CCcEEEEcCCC
Confidence 99988754 789999999999999999875544 4677888999999999 5678888875 78899999764
No 306
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.65 E-value=3.5e-05 Score=74.00 Aligned_cols=144 Identities=8% Similarity=0.016 Sum_probs=94.5
Q ss_pred EeecCCCeEEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeEEEECCCCCEEEEEeCCCeE
Q 001477 353 DFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIV 432 (1071)
Q Consensus 353 ~fsp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~la~~~~dg~i 432 (1071)
...+|.+++++.|+..+.+.--|..+|+..-. . --...|.+-+.- -|++++.|...|.+
T Consensus 17 VV~~dskT~v~igSHs~~~~avd~~sG~~~We-------~-------------ilg~RiE~sa~v-vgdfVV~GCy~g~l 75 (354)
T KOG4649|consen 17 VVCNDSKTLVVIGSHSGIVIAVDPQSGNLIWE-------A-------------ILGVRIECSAIV-VGDFVVLGCYSGGL 75 (354)
T ss_pred EEecCCceEEEEecCCceEEEecCCCCcEEee-------h-------------hhCceeeeeeEE-ECCEEEEEEccCcE
Confidence 34456678899999999999999998875532 1 012223332222 57789999999999
Q ss_pred EEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccCCceeEEecCCCCCeEEEEecccCCcc
Q 001477 433 HLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQ 512 (1071)
Q Consensus 433 ~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~ 512 (1071)
.+.+.++|........+..- . ......+++. ++..|+.|++.+..|.++..+++..+-..+...+-++.+- + .
T Consensus 76 Yfl~~~tGs~~w~f~~~~~v--k-~~a~~d~~~g--lIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g-~-~ 148 (354)
T KOG4649|consen 76 YFLCVKTGSQIWNFVILETV--K-VRAQCDFDGG--LIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPG-D-G 148 (354)
T ss_pred EEEEecchhheeeeeehhhh--c-cceEEcCCCc--eEEEecCCCcEEEecccccceEEecccCCceeccceecCC-C-c
Confidence 99999999766533332211 1 1233456777 8999999999999999999999887644443344445442 2 2
Q ss_pred EEEEEecCCeEE
Q 001477 513 FIFSTAIDGKIK 524 (1071)
Q Consensus 513 ~l~s~~~d~~i~ 524 (1071)
.|+.+...|.+.
T Consensus 149 sly~a~t~G~vl 160 (354)
T KOG4649|consen 149 SLYAAITAGAVL 160 (354)
T ss_pred eEEEEeccceEE
Confidence 344444445443
No 307
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.65 E-value=3.6e-05 Score=80.19 Aligned_cols=219 Identities=18% Similarity=0.170 Sum_probs=141.0
Q ss_pred EEEECC-CCCEEEEEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEe-cCCCceEEEEEeCCCcEEEEEccCCcee
Q 001477 413 RCVWGP-DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFA-HPNKQLCIVTCGDDKMIKVWDVVAGRKQ 490 (1071)
Q Consensus 413 ~~~~sp-d~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s-~d~~~~~l~s~~~d~~i~iwd~~~~~~~ 490 (1071)
+++|.+ ++.++++-...+.|..|+..++... .+. ... ...+++. +++. ++.+... .+.++|..+++..
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~----~~~-~~~-~~G~~~~~~~g~---l~v~~~~-~~~~~d~~~g~~~ 73 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVE----VID-LPG-PNGMAFDRPDGR---LYVADSG-GIAVVDPDTGKVT 73 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEE----EEE-SSS-EEEEEEECTTSE---EEEEETT-CEEEEETTTTEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEE----EEe-cCC-CceEEEEccCCE---EEEEEcC-ceEEEecCCCcEE
Confidence 567888 6777777777899999999886432 122 122 6777887 6654 4555544 4555699888654
Q ss_pred EEecC-----CCCCeEEEEecccCCccEEEEEecC--------CeEEEEEcCCCceeEEecCCCCcEEEEEEccCCCEEE
Q 001477 491 YTFEG-----HEAPVYSVCPHHKESIQFIFSTAID--------GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLF 557 (1071)
Q Consensus 491 ~~~~~-----h~~~v~~i~~~~~~~~~~l~s~~~d--------~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 557 (1071)
..... .....+.+++.+++ .+.++.... |.|..++.. ++. ......-...+.++|+|+++.|+
T Consensus 74 ~~~~~~~~~~~~~~~ND~~vd~~G--~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~-~~~~~~~~~pNGi~~s~dg~~ly 149 (246)
T PF08450_consen 74 VLADLPDGGVPFNRPNDVAVDPDG--NLYVTDSGGGGASGIDPGSVYRIDPD-GKV-TVVADGLGFPNGIAFSPDGKTLY 149 (246)
T ss_dssp EEEEEETTCSCTEEEEEEEE-TTS---EEEEEECCBCTTCGGSEEEEEEETT-SEE-EEEEEEESSEEEEEEETTSSEEE
T ss_pred EEeeccCCCcccCCCceEEEcCCC--CEEEEecCCCccccccccceEEECCC-CeE-EEEecCcccccceEECCcchhee
Confidence 43332 34567888988754 666655433 456666665 332 22222344678999999999887
Q ss_pred EeccCCCCCCeEEEEeCCCCce----eEEeecccc--cceeEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCC
Q 001477 558 SCGTSKEGESHLVEWNESEGAI----KRTYSGFRK--RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGG 631 (1071)
Q Consensus 558 ~~~~~~d~~~~i~iwd~~~~~~----~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 631 (1071)
.+.. ..+.|..+++..... ...+..... +....+++..+|+..++.-..+.|.+++.+ |+.+..+.....
T Consensus 150 v~ds---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~ 225 (246)
T PF08450_consen 150 VADS---FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVP 225 (246)
T ss_dssp EEET---TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSS
T ss_pred eccc---ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCC
Confidence 6543 366788888853221 122211111 136779999999988888788999999998 888888876633
Q ss_pred CCCcceEEEc-CCCCEEEEEe
Q 001477 632 LPASPRLRFN-KEGSLLAVTT 651 (1071)
Q Consensus 632 ~~~v~~~~~s-~~~~~l~~~~ 651 (1071)
.+++++|. ++.+.|++.+
T Consensus 226 --~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 226 --RPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp --SEEEEEEESTTSSEEEEEE
T ss_pred --CEEEEEEECCCCCEEEEEe
Confidence 68999994 6766666544
No 308
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=6.7e-06 Score=83.81 Aligned_cols=249 Identities=13% Similarity=0.149 Sum_probs=149.0
Q ss_pred hcccCCCCeeEEEECCCCC-EEEEEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEE
Q 001477 403 LLNDAAISVNRCVWGPDGL-MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKV 481 (1071)
Q Consensus 403 ~~~~h~~~v~~~~~spd~~-~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~i 481 (1071)
++.+|...|..++|||..+ ++..++.+..|.|.|+++...+. .+..+ ..+++++|.-|..+ ++..|-..|.|.+
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vs---sy~a~-~~~wSC~wDlde~h-~IYaGl~nG~Vlv 262 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVS---SYIAY-NQIWSCCWDLDERH-VIYAGLQNGMVLV 262 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccceeee---heecc-CCceeeeeccCCcc-eeEEeccCceEEE
Confidence 4778999999999999877 78889999999999999976554 45556 78999999999876 8899999999999
Q ss_pred EEccCCce-eEEecC--CCCCeEEEEecccC----CccEEEEEecCCeEEEEEcCCCceeE--EecC-CCCcEEEEEEcc
Q 001477 482 WDVVAGRK-QYTFEG--HEAPVYSVCPHHKE----SIQFIFSTAIDGKIKAWLYDYLGSRV--DYDA-PGNWCTMMAYSA 551 (1071)
Q Consensus 482 wd~~~~~~-~~~~~~--h~~~v~~i~~~~~~----~~~~l~s~~~d~~i~vwd~~~~~~~~--~~~~-~~~~i~~~~~s~ 551 (1071)
+|++..+- +..+.+ ...+|..++..+.. .|.+++..+.+ +..|++....... .... ..+...++.+.+
T Consensus 263 yD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~ 340 (463)
T KOG1645|consen 263 YDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHG 340 (463)
T ss_pred EEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecC
Confidence 99986542 222222 23445544432211 12344444433 3446544322211 1111 233455666666
Q ss_pred CCCEEEEeccCCCCCCeEEE----EeCCCCceeEEee-ccccc------ceeEEEEeCCCCEEEE-EeCCCcEEEEeCCC
Q 001477 552 DGTRLFSCGTSKEGESHLVE----WNESEGAIKRTYS-GFRKR------SLGVVQFDTTRNRFLA-AGDEFQIKFWDMDN 619 (1071)
Q Consensus 552 ~~~~l~~~~~~~d~~~~i~i----wd~~~~~~~~~~~-~~~~~------~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~~ 619 (1071)
..++++....++.+-.+++. -|..+|.++..-+ ++.+. .-..+.-.++.++++. ++..+++.+||+.+
T Consensus 341 ~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s 420 (463)
T KOG1645|consen 341 VSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHS 420 (463)
T ss_pred ccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccch
Confidence 55666655443221111211 1222343332211 11000 0112223455666666 55778999999999
Q ss_pred CceeEEEecCCCCCCcceEEEcC-CC-CEEEEEeCCCcEEEEEcC
Q 001477 620 MNMLTTVDADGGLPASPRLRFNK-EG-SLLAVTTSDNGIKILANS 662 (1071)
Q Consensus 620 ~~~~~~~~~~~~~~~v~~~~~s~-~~-~~l~~~~~dg~v~iw~~~ 662 (1071)
++.++.+... .+|.++.... ++ .+|++-+ |..++||..+
T Consensus 421 ~evvQ~l~~~---epv~Dicp~~~n~~syLa~LT-d~~v~Iyk~e 461 (463)
T KOG1645|consen 421 FEVVQTLALS---EPVLDICPNDTNGSSYLALLT-DDRVHIYKNE 461 (463)
T ss_pred hheeeecccC---cceeecceeecCCcchhhhee-cceEEEEecC
Confidence 9999998765 3566666544 33 4555555 4588888754
No 309
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.64 E-value=2e-06 Score=82.22 Aligned_cols=95 Identities=21% Similarity=0.342 Sum_probs=72.0
Q ss_pred CeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEccCCeE-EEEecCcCCCeeEEEEcC-CCCE
Q 001477 861 GKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEV-KTKLKGHQNRITGLAFSP-TLNA 938 (1071)
Q Consensus 861 g~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~-~~~l~~h~~~v~~l~~s~-d~~~ 938 (1071)
+..+.|+++..+.+..-......|++++-+|...+++++|+.||.+-+||.+.... ...+..|..+|+.+-|+| ++..
T Consensus 159 d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~ 238 (319)
T KOG4714|consen 159 DNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEH 238 (319)
T ss_pred cceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchh
Confidence 34455555433222221122334899999997778899999999999999987743 445779999999999999 5789
Q ss_pred EEEEeCCCcEEEEECCC
Q 001477 939 LVSSGADAQLCMWSIDK 955 (1071)
Q Consensus 939 l~s~~~d~~v~vWd~~~ 955 (1071)
|+++++||.+..||..+
T Consensus 239 Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 239 LFTCSEDGSLWHWDAST 255 (319)
T ss_pred eeEecCCCcEEEEcCCC
Confidence 99999999999999876
No 310
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.60 E-value=5.9e-05 Score=76.98 Aligned_cols=232 Identities=13% Similarity=0.094 Sum_probs=151.2
Q ss_pred eeEEEECC-CCCEEEEEeCCCe-EEEEEecCCCccceeeEeecccCC--EEEEEEecCCCceEEEEEe-----CCCcEEE
Q 001477 411 VNRCVWGP-DGLMLGVAFSKHI-VHLYTYNPTGELRQHLEIDAHVGG--VNDIAFAHPNKQLCIVTCG-----DDKMIKV 481 (1071)
Q Consensus 411 v~~~~~sp-d~~~la~~~~dg~-i~iwd~~~~~~~~~~~~~~~h~~~--v~~~~~s~d~~~~~l~s~~-----~d~~i~i 481 (1071)
...++.+| ++..++.+-.-|+ ..+||..+++... .+....+. --.-.||+||+ +|++.- ..|.|-|
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~---~~~a~~gRHFyGHg~fs~dG~--~LytTEnd~~~g~G~IgV 81 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQ---RLWAPPGRHFYGHGVFSPDGR--LLYTTENDYETGRGVIGV 81 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceee---EEcCCCCCEEecCEEEcCCCC--EEEEeccccCCCcEEEEE
Confidence 34578888 5667777766664 7789999987665 22222221 12468999999 666653 3579999
Q ss_pred EEcc-CCceeEEecCCCCCeEEEEecccCCccEEEEEe------------------cCCeEEEEEcCCCceeEE--e--c
Q 001477 482 WDVV-AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA------------------IDGKIKAWLYDYLGSRVD--Y--D 538 (1071)
Q Consensus 482 wd~~-~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~------------------~d~~i~vwd~~~~~~~~~--~--~ 538 (1071)
||.. +-+.+.++..|.-.-..+.+.|++ ..|+.+. .+-.+.+-|..+++.+.+ + .
T Consensus 82 yd~~~~~~ri~E~~s~GIGPHel~l~pDG--~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~ 159 (305)
T PF07433_consen 82 YDAARGYRRIGEFPSHGIGPHELLLMPDG--ETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPD 159 (305)
T ss_pred EECcCCcEEEeEecCCCcChhhEEEcCCC--CEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcc
Confidence 9998 667788888887777788888755 5555542 122344455666665544 3 2
Q ss_pred CCCCcEEEEEEccCCCEEEEeccCCC---CCCeEEEEeCCCCceeEEeecc------cccceeEEEEeCCCCEEEEEe-C
Q 001477 539 APGNWCTMMAYSADGTRLFSCGTSKE---GESHLVEWNESEGAIKRTYSGF------RKRSLGVVQFDTTRNRFLAAG-D 608 (1071)
Q Consensus 539 ~~~~~i~~~~~s~~~~~l~~~~~~~d---~~~~i~iwd~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~~~-~ 608 (1071)
.+...|.-+++.++|..++..-..++ .-..+.+++. ++.+..+... -.+.+.++++++++..+++.+ .
T Consensus 160 ~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPr 237 (305)
T PF07433_consen 160 LHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPR 237 (305)
T ss_pred ccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCC
Confidence 35568999999999988876654332 1223444443 3333333221 122688999999999887766 7
Q ss_pred CCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCcEE
Q 001477 609 EFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIK 657 (1071)
Q Consensus 609 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~ 657 (1071)
.+.+.+||..+++.+...... .+..++-.+++ ++++ +..|.+.
T Consensus 238 Gg~~~~~d~~tg~~~~~~~l~----D~cGva~~~~~-f~~s-sG~G~~~ 280 (305)
T PF07433_consen 238 GGRVAVWDAATGRLLGSVPLP----DACGVAPTDDG-FLVS-SGQGQLI 280 (305)
T ss_pred CCEEEEEECCCCCEeeccccC----ceeeeeecCCc-eEEe-CCCccEE
Confidence 788999999999998887654 35666666666 4444 4445543
No 311
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.59 E-value=8.7e-05 Score=77.36 Aligned_cols=219 Identities=15% Similarity=0.134 Sum_probs=142.7
Q ss_pred EEEeecCCCeEEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeEEEEC-CCCCEEEEEeCC
Q 001477 351 SMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG-PDGLMLGVAFSK 429 (1071)
Q Consensus 351 ~~~fsp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~s-pd~~~la~~~~d 429 (1071)
++.|.+....|+++....+.|..|+..+++... +. .. ....+++. +++.++ .+...
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~--------------------~~-~~-~~~G~~~~~~~g~l~-v~~~~ 60 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV--------------------ID-LP-GPNGMAFDRPDGRLY-VADSG 60 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE--------------------EE-SS-SEEEEEEECTTSEEE-EEETT
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE--------------------Ee-cC-CCceEEEEccCCEEE-EEEcC
Confidence 678998444588888788999999998875432 01 11 26677777 665554 44454
Q ss_pred CeEEEEEecCCCccceeeEee--c-ccCCEEEEEEecCCCceEEEEEeCC--------CcEEEEEccCCceeEEecCCCC
Q 001477 430 HIVHLYTYNPTGELRQHLEID--A-HVGGVNDIAFAHPNKQLCIVTCGDD--------KMIKVWDVVAGRKQYTFEGHEA 498 (1071)
Q Consensus 430 g~i~iwd~~~~~~~~~~~~~~--~-h~~~v~~~~~s~d~~~~~l~s~~~d--------~~i~iwd~~~~~~~~~~~~h~~ 498 (1071)
+ +.++|..+++... ..... . .....+++++.++|+ +.++.... +.|..++.. ++..... ..-.
T Consensus 61 ~-~~~~d~~~g~~~~-~~~~~~~~~~~~~~ND~~vd~~G~--ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~-~~~~ 134 (246)
T PF08450_consen 61 G-IAVVDPDTGKVTV-LADLPDGGVPFNRPNDVAVDPDGN--LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVA-DGLG 134 (246)
T ss_dssp C-EEEEETTTTEEEE-EEEEETTCSCTEEEEEEEE-TTS---EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEE-EEES
T ss_pred c-eEEEecCCCcEEE-EeeccCCCcccCCCceEEEcCCCC--EEEEecCCCccccccccceEEECCC-CeEEEEe-cCcc
Confidence 4 5566988875432 22322 1 344688999999998 67766544 457777766 5543333 3355
Q ss_pred CeEEEEecccCCccEE-EEEecCCeEEEEEcCCCce----eE---EecCCCCcEEEEEEccCCCEEEEeccCCCCCCeEE
Q 001477 499 PVYSVCPHHKESIQFI-FSTAIDGKIKAWLYDYLGS----RV---DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLV 570 (1071)
Q Consensus 499 ~v~~i~~~~~~~~~~l-~s~~~d~~i~vwd~~~~~~----~~---~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~ 570 (1071)
..+.|+|+|++ +.| ++-+..+.|..++++.... .. .+....+..-.+++..+|+..++... .+.|.
T Consensus 135 ~pNGi~~s~dg--~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~----~~~I~ 208 (246)
T PF08450_consen 135 FPNGIAFSPDG--KTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWG----GGRIV 208 (246)
T ss_dssp SEEEEEEETTS--SEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEET----TTEEE
T ss_pred cccceEECCcc--hheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcC----CCEEE
Confidence 67899999865 544 5677888999999874433 11 22222235788999999987776542 67799
Q ss_pred EEeCCCCceeEEeecccccceeEEEEe-CCCCEEEEE
Q 001477 571 EWNESEGAIKRTYSGFRKRSLGVVQFD-TTRNRFLAA 606 (1071)
Q Consensus 571 iwd~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~ 606 (1071)
++|.. |+.+..+..... .+++++|. ++.+.|+..
T Consensus 209 ~~~p~-G~~~~~i~~p~~-~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 209 VFDPD-GKLLREIELPVP-RPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp EEETT-SCEEEEEE-SSS-SEEEEEEESTTSSEEEEE
T ss_pred EECCC-ccEEEEEcCCCC-CEEEEEEECCCCCEEEEE
Confidence 99987 988888877644 78889994 666666554
No 312
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.59 E-value=2.8e-07 Score=91.53 Aligned_cols=164 Identities=13% Similarity=0.079 Sum_probs=122.8
Q ss_pred EeecCCCeEEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeEEEECCCCCEEEEEeCCCeE
Q 001477 353 DFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIV 432 (1071)
Q Consensus 353 ~fsp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~la~~~~dg~i 432 (1071)
+||-+-.-+-++.+.+-.|-|-|+++|-... +. .++.|.++.|...+.++..|..+|.|
T Consensus 218 awSlni~gyhfs~G~sqqv~L~nvetg~~qs--------------------f~-sksDVfAlQf~~s~nLv~~GcRngeI 276 (425)
T KOG2695|consen 218 AWSLNIMGYHFSVGLSQQVLLTNVETGHQQS--------------------FQ-SKSDVFALQFAGSDNLVFNGCRNGEI 276 (425)
T ss_pred hhhhccceeeecccccceeEEEEeecccccc--------------------cc-cchhHHHHHhcccCCeeEecccCCcE
Confidence 7764432233444557789999999886442 22 56779999999999999999999999
Q ss_pred EEEEecCCCc--cceeeEeecccCCEEEEEEec-CCCceEEEEEeCCCcEEEEEccCCce---eEEecCCCCCeEEEEec
Q 001477 433 HLYTYNPTGE--LRQHLEIDAHVGGVNDIAFAH-PNKQLCIVTCGDDKMIKVWDVVAGRK---QYTFEGHEAPVYSVCPH 506 (1071)
Q Consensus 433 ~iwd~~~~~~--~~~~~~~~~h~~~v~~~~~s~-d~~~~~l~s~~~d~~i~iwd~~~~~~---~~~~~~h~~~v~~i~~~ 506 (1071)
..+|++.+.. .... ..--|...|+++.... +++ +|++.+.+|.|++||.+.-++ +.++.||...-.-+-++
T Consensus 277 ~~iDLR~rnqG~~~~a-~rlyh~Ssvtslq~Lq~s~q--~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~ 353 (425)
T KOG2695|consen 277 FVIDLRCRNQGNGWCA-QRLYHDSSVTSLQILQFSQQ--KLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAH 353 (425)
T ss_pred EEEEeeecccCCCcce-EEEEcCcchhhhhhhccccc--eEeeccCcCceeEeeehhhhcccceeeeecccccccccccc
Confidence 9999987521 1111 2225899999998877 455 788899999999999987666 88899987665555555
Q ss_pred ccCCccEEEEEecCCeEEEEEcCCCceeEEecCC
Q 001477 507 HKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP 540 (1071)
Q Consensus 507 ~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~ 540 (1071)
-++....+++++.|-..|+|.++.+.....+...
T Consensus 354 v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 354 VKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFP 387 (425)
T ss_pred cccccceEEEccCeeEEEEEecccCceeeccCCC
Confidence 5555578999999999999999988776655443
No 313
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.56 E-value=0.00027 Score=68.09 Aligned_cols=140 Identities=9% Similarity=-0.049 Sum_probs=93.5
Q ss_pred cEEEEEecCCeEEEEEcCCCceeEEecCCCCcEEEEEEccCCCEEEEeccCCCCCCeEEEEeCCCCceeEEeecccccce
Q 001477 512 QFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSL 591 (1071)
Q Consensus 512 ~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~v 591 (1071)
.+++.|+..+.+..-|..+++....... +..|.+-+.- -|++++.+.. .+.+++.+.++|.....+..... .-
T Consensus 24 T~v~igSHs~~~~avd~~sG~~~We~il-g~RiE~sa~v-vgdfVV~GCy----~g~lYfl~~~tGs~~w~f~~~~~-vk 96 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNLIWEAIL-GVRIECSAIV-VGDFVVLGCY----SGGLYFLCVKTGSQIWNFVILET-VK 96 (354)
T ss_pred eEEEEecCCceEEEecCCCCcEEeehhh-CceeeeeeEE-ECCEEEEEEc----cCcEEEEEecchhheeeeeehhh-hc
Confidence 5677778888887777777766654332 2223332222 4667887775 66799999999988877766543 11
Q ss_pred eEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEE
Q 001477 592 GVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILA 660 (1071)
Q Consensus 592 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~ 660 (1071)
......+++..+++|+.|++.+..|..+...+...+..+. ...+-+..|-...|+.+...|.+.--.
T Consensus 97 ~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~--~f~sP~i~~g~~sly~a~t~G~vlavt 163 (354)
T KOG4649|consen 97 VRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGG--TFVSPVIAPGDGSLYAAITAGAVLAVT 163 (354)
T ss_pred cceEEcCCCceEEEecCCCcEEEecccccceEEecccCCc--eeccceecCCCceEEEEeccceEEEEc
Confidence 2345678999999999999999999999999888765544 223445556333455555555554433
No 314
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.56 E-value=1.4e-05 Score=89.17 Aligned_cols=157 Identities=17% Similarity=0.155 Sum_probs=99.8
Q ss_pred EecCCcEEEEEeCCeEEEEECCC-----CeEEEEEeCCCCCeEEEEEcCCCCCEEEE-EeCCCeEEEEEccCCe------
Q 001477 848 LSKNDSYVMSASGGKVSLFNMMT-----FKVMTMFMSPPPAATFLAFHPQDNNIIAI-GMEDSSVQIYNVRVDE------ 915 (1071)
Q Consensus 848 ~s~d~~~la~~~dg~i~vwd~~~-----~~~~~~~~~~~~~i~~l~~sp~~~~~la~-g~~dg~v~vwd~~~~~------ 915 (1071)
+.+||++... .++.|.++|..+ .+.+..+. -......+++|| ||+++++ +..+.+|.|.|+.+.+
T Consensus 284 ~vkdGK~~~V-~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSP-DGkylyVanklS~tVSVIDv~k~k~~~~~~ 360 (635)
T PRK02888 284 AVKAGKFKTI-GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSP-DGKYFIANGKLSPTVTVIDVRKLDDLFDGK 360 (635)
T ss_pred hhhCCCEEEE-CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECC-CCCEEEEeCCCCCcEEEEEChhhhhhhhcc
Confidence 3457876665 467899999988 45555554 344678899999 6776555 4558999999998754
Q ss_pred ------EEEEecCcCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCC------Cce----eeeeeecCCCCCCCCCCCceE
Q 001477 916 ------VKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK------WEK----LKSRFIQAPAGRQSPLVGETK 979 (1071)
Q Consensus 916 ------~~~~l~~h~~~v~~l~~s~d~~~l~s~~~d~~v~vWd~~~------~~~----~~~~~~~~~~~~~~~~~~v~~ 979 (1071)
.+.+..--.+ -...+|.++|....|..-|..|..|+++. |+. +...-..-..+|.. ....
T Consensus 361 ~~~~~~vvaevevGlG-PLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~---~~~g 436 (635)
T PRK02888 361 IKPRDAVVAEPELGLG-PLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNH---ASMG 436 (635)
T ss_pred CCccceEEEeeccCCC-cceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceee---ecCC
Confidence 2444443333 35678999999888999999999999987 222 21111111122210 0011
Q ss_pred EEEccCCCEEEEEE----CC----------eEEEEeCCCCceeecC
Q 001477 980 VQFHNDQTHLLVVH----ES----------QISVYDSKLECSRSWS 1011 (1071)
Q Consensus 980 ~~~s~dg~~l~~~~----d~----------~i~vwd~~~~~~~~~~ 1011 (1071)
=.-.|||+||++.+ |+ .-.+.|+.+.....+.
T Consensus 437 ~t~~~dgk~l~~~nk~skdrfl~vgpl~pen~qlidIsgdkM~lv~ 482 (635)
T PRK02888 437 ETKEADGKWLVSLNKFSKDRFLPVGPLHPENDQLIDISGDKMKLVH 482 (635)
T ss_pred CcCCCCCCEEEEccccccccccCCCCCCCCcceeEEccCCeeEEEe
Confidence 12278999999843 32 2357788666655543
No 315
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=1.6e-06 Score=89.26 Aligned_cols=258 Identities=13% Similarity=0.106 Sum_probs=169.2
Q ss_pred eecCCCCeEEEEeecCCCeEEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeEEEECCCCC
Q 001477 342 TLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGL 421 (1071)
Q Consensus 342 ~~~h~~~V~~~~fsp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd~~ 421 (1071)
...|.+.|+-+.-+-.. ++.+++.||.++.|.-..-..+.. ...+..|-+.|.+++.|-||.
T Consensus 5 symhrd~i~hv~~tka~--fiiqASlDGh~KFWkKs~isGvEf----------------VKhFraHL~~I~sl~~S~dg~ 66 (558)
T KOG0882|consen 5 SYMHRDVITHVFPTKAK--FIIQASLDGHKKFWKKSRISGVEF----------------VKHFRAHLGVILSLAVSYDGW 66 (558)
T ss_pred hhcccceeeeEeeehhh--eEEeeecchhhhhcCCCCccceee----------------hhhhHHHHHHHHhhhccccce
Confidence 34577778877666543 788999999999998543121110 011456888999999999999
Q ss_pred EEEEEeC-CCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCc-eEEEEEeCCCcEEEEEccCCc-ee-EEecCCC
Q 001477 422 MLGVAFS-KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQ-LCIVTCGDDKMIKVWDVVAGR-KQ-YTFEGHE 497 (1071)
Q Consensus 422 ~la~~~~-dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~-~~l~s~~~d~~i~iwd~~~~~-~~-~~~~~h~ 497 (1071)
++++.+. |..++++|+.+-..+.-. .+..-.+.+.+ ..++.... ++-++.-.++.+.++|-.... +. ..-.-|.
T Consensus 67 L~~Sv~d~Dhs~KvfDvEn~Dminmi-KL~~lPg~a~w-v~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~ 144 (558)
T KOG0882|consen 67 LFRSVEDPDHSVKVFDVENFDMINMI-KLVDLPGFAEW-VTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHF 144 (558)
T ss_pred eEeeccCcccceeEEEeeccchhhhc-ccccCCCceEE-ecCCCCeeeeEEeecccCCCcEEECCcCCcCccceeccccc
Confidence 9999877 999999999876544211 12222222222 22232111 123344567889999966543 22 3334599
Q ss_pred CCeEEEEecccCCccEEEEEecCCeEEEEEcCC------CceeE---------EecCCCCcEEEEEEccCCCEEEEeccC
Q 001477 498 APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY------LGSRV---------DYDAPGNWCTMMAYSADGTRLFSCGTS 562 (1071)
Q Consensus 498 ~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~------~~~~~---------~~~~~~~~i~~~~~s~~~~~l~~~~~~ 562 (1071)
.+|.++.+++.. +.+++....|.|..|.... ..... .+........++.|+|+|..+..-+.
T Consensus 145 sPV~~i~y~qa~--Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~- 221 (558)
T KOG0882|consen 145 SPVKKIRYNQAG--DSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNP- 221 (558)
T ss_pred CceEEEEeeccc--cceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCc-
Confidence 999999999876 6788999999999998763 11111 11222346789999999999998764
Q ss_pred CCCCCeEEEEeCCCCceeEEeeccc--------------------------------ccceeEEEEeCCCCEEEEEeCCC
Q 001477 563 KEGESHLVEWNESEGAIKRTYSGFR--------------------------------KRSLGVVQFDTTRNRFLAAGDEF 610 (1071)
Q Consensus 563 ~d~~~~i~iwd~~~~~~~~~~~~~~--------------------------------~~~v~~~~~~~~~~~l~~~~~dg 610 (1071)
+..|++++.++|+.++.+.... ...-..+.|...|++|+-++-=|
T Consensus 222 ---DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g 298 (558)
T KOG0882|consen 222 ---DRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG 298 (558)
T ss_pred ---ccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee
Confidence 8889999999988766543211 11223356777777777766443
Q ss_pred cEEEEeCCCCceeEEE
Q 001477 611 QIKFWDMDNMNMLTTV 626 (1071)
Q Consensus 611 ~i~iwd~~~~~~~~~~ 626 (1071)
|++.++.++.....+
T Consensus 299 -ikvin~~tn~v~ri~ 313 (558)
T KOG0882|consen 299 -IKVINLDTNTVVRIL 313 (558)
T ss_pred -EEEEEeecCeEEEEe
Confidence 677777776665554
No 316
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.55 E-value=2.3e-05 Score=81.60 Aligned_cols=219 Identities=15% Similarity=0.113 Sum_probs=138.0
Q ss_pred CCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccCCceeEEecCCCCCeEEEEeccc
Q 001477 429 KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHK 508 (1071)
Q Consensus 429 dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~ 508 (1071)
+|+|..||..+|+.+-.. .+..-.....+. ..+++. .+++++.++.+..||..+|+.+.++.. ...+.....
T Consensus 2 ~g~l~~~d~~tG~~~W~~-~~~~~~~~~~~~-~~~~~~--~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~--- 73 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSY-DLGPGIGGPVAT-AVPDGG--RVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPV--- 73 (238)
T ss_dssp TSEEEEEETTTTEEEEEE-ECSSSCSSEEET-EEEETT--EEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEE---
T ss_pred CCEEEEEECCCCCEEEEE-ECCCCCCCccce-EEEeCC--EEEEEcCCCEEEEEECCCCCEEEEeec-cccccceee---
Confidence 688999999888766533 121101122211 233455 577778999999999999999877764 222211111
Q ss_pred CCccEEEEEecCCeEEEEEcCCCceeEEe-cCCC---CcEEEEEEccCCCEEEEeccCCCCCCeEEEEeCCCCceeEEee
Q 001477 509 ESIQFIFSTAIDGKIKAWLYDYLGSRVDY-DAPG---NWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS 584 (1071)
Q Consensus 509 ~~~~~l~s~~~d~~i~vwd~~~~~~~~~~-~~~~---~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~ 584 (1071)
..+..++.++.++.+..+|..+++..... .... ..........++..++++.. ++.|..+|.++|+.+..+.
T Consensus 74 ~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~l~~~d~~tG~~~w~~~ 149 (238)
T PF13360_consen 74 VDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS----SGKLVALDPKTGKLLWKYP 149 (238)
T ss_dssp EETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET----CSEEEEEETTTTEEEEEEE
T ss_pred ecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEec----cCcEEEEecCCCcEEEEee
Confidence 12256777778899999999999988773 3221 11222333334777777653 6779999999999988887
Q ss_pred cccccc---------eeEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCc
Q 001477 585 GFRKRS---------LGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNG 655 (1071)
Q Consensus 585 ~~~~~~---------v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 655 (1071)
...... +..-....++ .++.++.++.+..+|+.+++.+.... .. .+.. ....++..+++++.++.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~-~~---~~~~-~~~~~~~~l~~~~~~~~ 223 (238)
T PF13360_consen 150 VGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP-IS---GIYS-LPSVDGGTLYVTSSDGR 223 (238)
T ss_dssp SSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC-SS----ECE-CEECCCTEEEEEETTTE
T ss_pred cCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec-CC---CccC-CceeeCCEEEEEeCCCE
Confidence 643211 1122222234 77777777754444999999765333 11 2222 13467788888889999
Q ss_pred EEEEEcCChh
Q 001477 656 IKILANSDGV 665 (1071)
Q Consensus 656 v~iw~~~~~~ 665 (1071)
|..||..+++
T Consensus 224 l~~~d~~tG~ 233 (238)
T PF13360_consen 224 LYALDLKTGK 233 (238)
T ss_dssp EEEEETTTTE
T ss_pred EEEEECCCCC
Confidence 9999999983
No 317
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.52 E-value=3.3e-07 Score=63.42 Aligned_cols=39 Identities=28% Similarity=0.587 Sum_probs=37.2
Q ss_pred CeEEEEecCcCCCeeEEEEcCCCCEEEEEeCCCcEEEEE
Q 001477 914 DEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 952 (1071)
Q Consensus 914 ~~~~~~l~~h~~~v~~l~~s~d~~~l~s~~~d~~v~vWd 952 (1071)
++++.++.+|.+.|++|+|+|++.+|+|++.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467899999999999999999999999999999999997
No 318
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.50 E-value=1.9e-05 Score=88.07 Aligned_cols=102 Identities=17% Similarity=0.152 Sum_probs=71.8
Q ss_pred CCCeEEEEEecCCcEEEEEe--CCeEEEEECCCCeE------------EEEEeCCCCCeEEEEEcCCCCCEEEEEeCCCe
Q 001477 840 EESAACIALSKNDSYVMSAS--GGKVSLFNMMTFKV------------MTMFMSPPPAATFLAFHPQDNNIIAIGMEDSS 905 (1071)
Q Consensus 840 ~~~v~~v~~s~d~~~la~~~--dg~i~vwd~~~~~~------------~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~ 905 (1071)
......+++||||+++++++ +.++.|+|+.+.+. ..+..- ...-...+|.+ +|+...+..-|..
T Consensus 320 GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg-~G~aytslf~dsq 397 (635)
T PRK02888 320 PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDG-RGNAYTTLFLDSQ 397 (635)
T ss_pred CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc-CCCcceEEECC-CCCEEEeEeecce
Confidence 45566899999999999887 79999999987552 233322 22335678888 7888888899999
Q ss_pred EEEEEccC----------CeEEEEecCcCCCee-----EEEEcCCCCEEEEEe
Q 001477 906 VQIYNVRV----------DEVKTKLKGHQNRIT-----GLAFSPTLNALVSSG 943 (1071)
Q Consensus 906 v~vwd~~~----------~~~~~~l~~h~~~v~-----~l~~s~d~~~l~s~~ 943 (1071)
|..|++.+ ...+..+.-|-.+.. +=.-.|||+||++..
T Consensus 398 v~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~n 450 (635)
T PRK02888 398 IVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLN 450 (635)
T ss_pred eEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEcc
Confidence 99999986 344555554433221 112367999999864
No 319
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.49 E-value=3.4e-05 Score=80.23 Aligned_cols=222 Identities=12% Similarity=0.054 Sum_probs=136.0
Q ss_pred CCeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeEEEECCCCCEEEEEeCCCeEEEEEecCCCccceee
Q 001477 368 VGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHL 447 (1071)
Q Consensus 368 dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~la~~~~dg~i~iwd~~~~~~~~~~~ 447 (1071)
+|+|..||..+|+.+-...+. .+... ..+. ..+++..+++++.++.+..||..+|+.+...
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~----------------~~~~~-~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~- 62 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLG----------------PGIGG-PVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRF- 62 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECS----------------SSCSS-EEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEE-
T ss_pred CCEEEEEECCCCCEEEEEECC----------------CCCCC-ccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEe-
Confidence 678889999888765431100 00111 1111 3336777888889999999999998765422
Q ss_pred EeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccCCceeEEe-cCCCC--C-eEEEEecccCCccEEEEEecCCeE
Q 001477 448 EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF-EGHEA--P-VYSVCPHHKESIQFIFSTAIDGKI 523 (1071)
Q Consensus 448 ~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~h~~--~-v~~i~~~~~~~~~~l~s~~~d~~i 523 (1071)
.. .+.+....... +. .++.++.++.++.+|..+|+.+... ..... . ......... ++.++.+..++.|
T Consensus 63 --~~-~~~~~~~~~~~-~~--~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~l 134 (238)
T PF13360_consen 63 --DL-PGPISGAPVVD-GG--RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVD--GDRLYVGTSSGKL 134 (238)
T ss_dssp --EC-SSCGGSGEEEE-TT--EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEE--TTEEEEEETCSEE
T ss_pred --ec-cccccceeeec-cc--ccccccceeeeEecccCCcceeeeeccccccccccccccCceEe--cCEEEEEeccCcE
Confidence 22 22222212223 44 4666668889999999999998874 32211 1 111112111 3688888889999
Q ss_pred EEEEcCCCceeEEecCCCCc----------EEEEEEccCCCEEEEeccCCCCCCeEEEEeCCCCceeEEeecccccceeE
Q 001477 524 KAWLYDYLGSRVDYDAPGNW----------CTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGV 593 (1071)
Q Consensus 524 ~vwd~~~~~~~~~~~~~~~~----------i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~v~~ 593 (1071)
..+|+++++........... +..-....++ .++.+.. ++.+..+|..+++.+.... . . .+..
T Consensus 135 ~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~----~g~~~~~d~~tg~~~w~~~-~-~-~~~~ 206 (238)
T PF13360_consen 135 VALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSG----DGRVVAVDLATGEKLWSKP-I-S-GIYS 206 (238)
T ss_dssp EEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECC----TSSEEEEETTTTEEEEEEC-S-S--ECE
T ss_pred EEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcC----CCeEEEEECCCCCEEEEec-C-C-CccC
Confidence 99999999987766553321 1222233344 5555543 4434444999998665333 2 2 2222
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEeCCCCceeEE
Q 001477 594 VQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTT 625 (1071)
Q Consensus 594 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 625 (1071)
....++..++.++.++.|..||+++++.+..
T Consensus 207 -~~~~~~~~l~~~~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 207 -LPSVDGGTLYVTSSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp -CEECCCTEEEEEETTTEEEEEETTTTEEEEE
T ss_pred -CceeeCCEEEEEeCCCEEEEEECCCCCEEeE
Confidence 2467788888888999999999999987643
No 320
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.48 E-value=2.4e-05 Score=80.59 Aligned_cols=285 Identities=10% Similarity=0.104 Sum_probs=157.8
Q ss_pred CeEEEEeCCCCceeEEeecccccceeEEEEeCCCCEEEEEe----------CCCcEEEEeCCCCceeEEEecCCC-----
Q 001477 567 SHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG----------DEFQIKFWDMDNMNMLTTVDADGG----- 631 (1071)
Q Consensus 567 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~----- 631 (1071)
++++++|..+++.+..+.... ...+..+|+++.+++++ ..-.|.+||..+-.+...+..+..
T Consensus 17 ~rv~viD~d~~k~lGmi~~g~---~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~ 93 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTGF---LGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQV 93 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEES---SEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--B
T ss_pred ceEEEEECCCCcEEEEeeccc---CCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhee
Confidence 459999999999887776543 33466899999988753 233699999999988887765543
Q ss_pred CCCcceEEEcCCCCEEEEEe--CCCcEEEEEcCChhhhhhhhcCCccccccCCCCCCCCCCccccccCCCCccccccCCC
Q 001477 632 LPASPRLRFNKEGSLLAVTT--SDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPT 709 (1071)
Q Consensus 632 ~~~v~~~~~s~~~~~l~~~~--~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 709 (1071)
......++++.||+++++.. -...|.+.|+... +.+..+.-.....
T Consensus 94 ~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~-kvv~ei~~PGC~~------------------------------- 141 (342)
T PF06433_consen 94 VPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAK-KVVGEIDTPGCWL------------------------------- 141 (342)
T ss_dssp S--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTT-EEEEEEEGTSEEE-------------------------------
T ss_pred cccccceEEccCCcEEEEEccCCCCeEEEEECCCC-ceeeeecCCCEEE-------------------------------
Confidence 12335677888888776653 3557778887665 3333222111100
Q ss_pred CCCCCCCCCcccccccCCCCcccccccccccccccCccceeccCCCCCcccceeeecCCCcCCCceEEEEEecccchhhh
Q 001477 710 LERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLA 789 (1071)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~~ 789 (1071)
.....+..+...++||++....++.......... .............-+++..+..++-
T Consensus 142 --------------------iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t-~~F~~~~dp~f~~~~~~~~~~~~~F 200 (342)
T PF06433_consen 142 --------------------IYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKST-KVFDPDDDPLFEHPAYSRDGGRLYF 200 (342)
T ss_dssp --------------------EEEEETTEEEEEETTSCEEEEEETSTSSEEEEEE-EESSTTTS-B-S--EEETTTTEEEE
T ss_pred --------------------EEecCCCceEEEecCCceEEEEECCCCCEeEeec-cccCCCCcccccccceECCCCeEEE
Confidence 0001233455667778877777774333321111 1111112212223334444433444
Q ss_pred ccccceeEEEecccccCCCCCccceeecceeccCCCCCccccccCCCCCCCCCeEEEEEecCCcEEEEEe----CC----
Q 001477 790 LASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS----GG---- 861 (1071)
Q Consensus 790 ~~~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~v~~s~d~~~la~~~----dg---- 861 (1071)
.+.+|.|+--++...... -..-|.+.+......... .+...-+++++....|.+.- +|
T Consensus 201 ~Sy~G~v~~~dlsg~~~~---------~~~~~~~~t~~e~~~~Wr-----PGG~Q~~A~~~~~~rlyvLMh~g~~gsHKd 266 (342)
T PF06433_consen 201 VSYEGNVYSADLSGDSAK---------FGKPWSLLTDAEKADGWR-----PGGWQLIAYHAASGRLYVLMHQGGEGSHKD 266 (342)
T ss_dssp EBTTSEEEEEEETTSSEE---------EEEEEESS-HHHHHTTEE-----E-SSS-EEEETTTTEEEEEEEE--TT-TTS
T ss_pred EecCCEEEEEeccCCccc---------ccCcccccCccccccCcC-----CcceeeeeeccccCeEEEEecCCCCCCccC
Confidence 555666666555432110 012333322111000000 23344577777555544431 22
Q ss_pred ---eEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCCEEEEEe-CCCeEEEEEccCCeEEEEecC
Q 001477 862 ---KVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGM-EDSSVQIYNVRVDEVKTKLKG 922 (1071)
Q Consensus 862 ---~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~-~dg~v~vwd~~~~~~~~~l~~ 922 (1071)
.|.++|+++++.+.++.. ..++.+++.+.++..+|.+.+ .++.+.+||..+|+.+.++.+
T Consensus 267 pgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 267 PGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp -EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred CceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 499999999999999874 235779999996666776554 579999999999999988874
No 321
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.46 E-value=3e-06 Score=95.12 Aligned_cols=180 Identities=16% Similarity=0.180 Sum_probs=133.0
Q ss_pred CCcEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEccCCeEEEEecCcCCCeeE
Q 001477 851 NDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITG 929 (1071)
Q Consensus 851 d~~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~~~v~~ 929 (1071)
++..++.|+ ...+..+|+.+.+..+...-..+.|+-+.. +++++.+|...|+|.+-|..+.+.+.++..|++.|..
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~---Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSD 222 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY---NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISD 222 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe---cCcEEEeecccceEEeecCCcCceeeeeeccccceee
Confidence 445667777 788999999998887777655556666665 6789999999999999999999999999999999976
Q ss_pred EEEcCCCCEEEEEeC---------CCcEEEEECCCCceeeeeeecCCCCCCCCCCCceEEEEccC--CCEEEEEECCeEE
Q 001477 930 LAFSPTLNALVSSGA---------DAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHND--QTHLLVVHESQIS 998 (1071)
Q Consensus 930 l~~s~d~~~l~s~~~---------d~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d--g~~l~~~~d~~i~ 998 (1071)
+.. .|+.|+|||. |.-|+|||++..+.+... ..+ ....-+.|.|. .+..+++..|...
T Consensus 223 fDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI--~~~-------~~P~flrf~Psl~t~~~V~S~sGq~q 291 (1118)
T KOG1275|consen 223 FDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPI--QFP-------YGPQFLRFHPSLTTRLAVTSQSGQFQ 291 (1118)
T ss_pred eec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCc--ccc-------cCchhhhhcccccceEEEEeccccee
Confidence 554 6999999984 456899999986644321 111 22245667774 3444557788888
Q ss_pred EEeC--CCCc-eeecCCCCCCCCCeeEEEEecCCcEEEEEeCCCeEEEEE
Q 001477 999 VYDS--KLEC-SRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFD 1045 (1071)
Q Consensus 999 vwd~--~~~~-~~~~~~~~~h~~~v~~~~~s~dg~~l~t~~~Dg~i~vwd 1045 (1071)
+-|. ..+. ...... ......+.++++|++|+.|+.|..+|.|.+|.
T Consensus 292 ~vd~~~lsNP~~~~~~v-~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 292 FVDTATLSNPPAGVKMV-NPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred eccccccCCCccceeEE-ccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 8884 1111 111111 12255699999999999999999999999997
No 322
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.45 E-value=0.00045 Score=71.51 Aligned_cols=212 Identities=18% Similarity=0.179 Sum_probs=127.3
Q ss_pred EEEEecCCcEEEEEe---CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcc-CCeEEEE-
Q 001477 845 CIALSKNDSYVMSAS---GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVR-VDEVKTK- 919 (1071)
Q Consensus 845 ~v~~s~d~~~la~~~---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~-~~~~~~~- 919 (1071)
.+++|.||+++.+.. .-.|.|.|+..++.+.++..+.+ ..+- |.+++-+.+.+.||++.-..+. .|+...+
T Consensus 99 ~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC--~~iy--P~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~ 174 (342)
T PF06433_consen 99 MFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGC--WLIY--PSGNRGFSMLCGDGSLLTVTLDADGKEAQKS 174 (342)
T ss_dssp GEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSE--EEEE--EEETTEEEEEETTSCEEEEEETSTSSEEEEE
T ss_pred ceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCE--EEEE--ecCCCceEEEecCCceEEEEECCCCCEeEee
Confidence 357888999888876 46799999999999988875432 2222 2133457778889999999887 5554322
Q ss_pred ---ecCcCCCe-eEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeecCCCC----CCCCCCCceEEEEccCCCEEEE
Q 001477 920 ---LKGHQNRI-TGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAG----RQSPLVGETKVQFHNDQTHLLV 991 (1071)
Q Consensus 920 ---l~~h~~~v-~~l~~s~d~~~l~s~~~d~~v~vWd~~~~~~~~~~~~~~~~~----~~~~~~~v~~~~~s~dg~~l~~ 991 (1071)
+..-.+++ ..-+++.++..++-.+-+|.|+--|+......-......... ..-.+++-.-+++++....|.+
T Consensus 175 t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyv 254 (342)
T PF06433_consen 175 TKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYV 254 (342)
T ss_dssp EEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEE
T ss_pred ccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEE
Confidence 21222222 233455556566667888888888887765332222221110 0001145567899877666655
Q ss_pred E----E-----CC--eEEEEeC-CCCceeecCCCCCCCCCeeEEEEecCCc-EEEEE-eCCCeEEEEEcCCCeEEEEeCC
Q 001477 992 V----H-----ES--QISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGL-LVYAG-FCDGAIGVFDAETLRFRCRIGP 1057 (1071)
Q Consensus 992 ~----~-----d~--~i~vwd~-~~~~~~~~~~~~~h~~~v~~~~~s~dg~-~l~t~-~~Dg~i~vwd~~~~~~~~~~~~ 1057 (1071)
- . ++ .|-+||+ +.+.+..+.. ..++.+++.|.|.+ +|++. ..++.+.+||..+|++++++..
T Consensus 255 LMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l----~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 255 LMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL----EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp EEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE----EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred EecCCCCCCccCCceEEEEEECCCCeEEEEEeC----CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 2 2 22 4667777 6666666543 34688999999988 55544 4589999999999999999876
Q ss_pred CcccCcc
Q 001477 1058 SAYIPTY 1064 (1071)
Q Consensus 1058 ~~~~~~~ 1064 (1071)
....|..
T Consensus 331 lG~~~~l 337 (342)
T PF06433_consen 331 LGETPTL 337 (342)
T ss_dssp -SSS--E
T ss_pred cCCCceE
Confidence 6555543
No 323
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.43 E-value=6.4e-05 Score=82.75 Aligned_cols=267 Identities=15% Similarity=0.197 Sum_probs=144.8
Q ss_pred ecCCCeEEEEE--------cCCCeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeEEEECCCCCEEEEE
Q 001477 355 HPQQQTILLVG--------TNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA 426 (1071)
Q Consensus 355 sp~g~~lla~g--------s~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~la~~ 426 (1071)
|||++.+|+.- +..+.+.|||+.+++... +......+....|||||+.+|..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~--------------------l~~~~~~~~~~~~sP~g~~~~~v 60 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITP--------------------LTPPPPKLQDAKWSPDGKYIAFV 60 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEE--------------------SS-EETTBSEEEE-SSSTEEEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEE--------------------CcCCccccccceeecCCCeeEEE
Confidence 68887655522 234678889988875432 12225678899999999999998
Q ss_pred eCCCeEEEEEecCCCccceeeEeec-------c---------cCCEEEEEEecCCCceEEEEE-eCCCcEE---------
Q 001477 427 FSKHIVHLYTYNPTGELRQHLEIDA-------H---------VGGVNDIAFAHPNKQLCIVTC-GDDKMIK--------- 480 (1071)
Q Consensus 427 ~~dg~i~iwd~~~~~~~~~~~~~~~-------h---------~~~v~~~~~s~d~~~~~l~s~-~~d~~i~--------- 480 (1071)
. ++.|.+++..++...+. +..+ - -+.-..+-|||||++ |+.. -++..|.
T Consensus 61 ~-~~nly~~~~~~~~~~~l--T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~--la~~~~d~~~v~~~~~~~~~~ 135 (353)
T PF00930_consen 61 R-DNNLYLRDLATGQETQL--TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKY--LAFLRFDEREVPEYPLPDYSP 135 (353)
T ss_dssp E-TTEEEEESSTTSEEEES--ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSE--EEEEEEE-TTS-EEEEEEESS
T ss_pred e-cCceEEEECCCCCeEEe--ccccceeEEcCccceeccccccccccceEECCCCCE--EEEEEECCcCCceEEeeccCC
Confidence 4 67899998877643322 1112 0 122356889999995 4432 2222222
Q ss_pred --------------------------EEEccCCceeE-E-e---cCCCCCeEEEEecccCCccEEEEEecCC---eEEEE
Q 001477 481 --------------------------VWDVVAGRKQY-T-F---EGHEAPVYSVCPHHKESIQFIFSTAIDG---KIKAW 526 (1071)
Q Consensus 481 --------------------------iwd~~~~~~~~-~-~---~~h~~~v~~i~~~~~~~~~~l~s~~~d~---~i~vw 526 (1071)
++|+.+++... . . ..-...+..+.|.+++..-.+.....+. .+.++
T Consensus 136 ~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~ 215 (353)
T PF00930_consen 136 PDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLC 215 (353)
T ss_dssp STESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEE
T ss_pred ccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEE
Confidence 33444433211 0 0 1223345566676653111222223332 25556
Q ss_pred EcCCCceeEEecC-CCCcE---EEEEEc-cCCCEEEEeccCCCCCCeEEEEeCCCCceeEEeecccccce-eEEEEeCCC
Q 001477 527 LYDYLGSRVDYDA-PGNWC---TMMAYS-ADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSL-GVVQFDTTR 600 (1071)
Q Consensus 527 d~~~~~~~~~~~~-~~~~i---~~~~~s-~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~v-~~~~~~~~~ 600 (1071)
|..++........ ...+| ....+. +++..++..+. +++-..|.+++...+... .+....- .| ..+.+++++
T Consensus 216 d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~-~~G~~hly~~~~~~~~~~-~lT~G~~-~V~~i~~~d~~~ 292 (353)
T PF00930_consen 216 DASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISE-RDGYRHLYLYDLDGGKPR-QLTSGDW-EVTSILGWDEDN 292 (353)
T ss_dssp EECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEE-TTSSEEEEEEETTSSEEE-ESS-SSS--EEEEEEEECTS
T ss_pred ECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEE-cCCCcEEEEEccccccee-ccccCce-eecccceEcCCC
Confidence 7666554433221 22222 244554 78887776665 667778888898877644 3332222 45 457888988
Q ss_pred CEEEE-EeC----CCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEe
Q 001477 601 NRFLA-AGD----EFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTT 651 (1071)
Q Consensus 601 ~~l~~-~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 651 (1071)
+.++. +.. ...|+.-++..+..+..+...... ...+.|||++++++...
T Consensus 293 ~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~--~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 293 NRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGD--HYSASFSPDGKYYVDTY 346 (353)
T ss_dssp SEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSST--TEEEEE-TTSSEEEEEE
T ss_pred CEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCC--ceEEEECCCCCEEEEEE
Confidence 77665 433 235666666633445555543332 15899999999877654
No 324
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.41 E-value=6.4e-05 Score=82.82 Aligned_cols=290 Identities=11% Similarity=0.089 Sum_probs=167.0
Q ss_pred CCCCeEEEEeecCCCeEEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeEEEECCCCCEEE
Q 001477 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1071)
Q Consensus 345 h~~~V~~~~fsp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~la 424 (1071)
+...|.--+++..++ +++.|+..|.+.+|+-.+++.... + ..+-.+.+..+..|++..++|
T Consensus 32 ~~~~v~lTc~dst~~-~l~~GsS~G~lyl~~R~~~~~~~~-~-----------------~~~~~~~~~~~~vs~~e~lvA 92 (726)
T KOG3621|consen 32 FPARVKLTCVDATEE-YLAMGSSAGSVYLYNRHTGEMRKL-K-----------------NEGATGITCVRSVSSVEYLVA 92 (726)
T ss_pred CcceEEEEEeecCCc-eEEEecccceEEEEecCchhhhcc-c-----------------ccCccceEEEEEecchhHhhh
Confidence 445666677777887 788999999999999887765431 0 123455677788899999999
Q ss_pred EEeCCCeEEEEEecCCCccceeeEe---ecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccCC----ceeEEecCCC
Q 001477 425 VAFSKHIVHLYTYNPTGELRQHLEI---DAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG----RKQYTFEGHE 497 (1071)
Q Consensus 425 ~~~~dg~i~iwd~~~~~~~~~~~~~---~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~----~~~~~~~~h~ 497 (1071)
.|+..|.|.++-++.+........- ..|...|++++|++++. .+.+|...|.|.+-.+.+. ...+.+-...
T Consensus 93 agt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~--k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~d 170 (726)
T KOG3621|consen 93 AGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGM--KLYSGDSQGKVVLTELDSRQAFLSKSQEILSED 170 (726)
T ss_pred hhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEeccccc--EEeecCCCceEEEEEechhhhhccccceeeccC
Confidence 9999999999998874432221111 13678999999999999 7999999999998887762 1122333455
Q ss_pred CCeEEEEecccCCccEEEEEecCCeEEEEEcCCCceeEEecCC-CC-cEEEEEEccC----CCEEEEeccCCCCCCeEEE
Q 001477 498 APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP-GN-WCTMMAYSAD----GTRLFSCGTSKEGESHLVE 571 (1071)
Q Consensus 498 ~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~-~~-~i~~~~~s~~----~~~l~~~~~~~d~~~~i~i 571 (1071)
+.|..+.... .+|+.++.-..+ +++++.......-+.. .+ .-...+|-|. .+-.+.|+.. -.++
T Consensus 171 s~IVQlD~~q----~~LLVStl~r~~-Lc~tE~eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaRP-----G~Rl 240 (726)
T KOG3621|consen 171 SEIVQLDYLQ----SYLLVSTLTRCI-LCQTEAETITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCARP-----GLRL 240 (726)
T ss_pred cceEEeeccc----ceehHhhhhhhh-eeecchhHHHHhcCCCcCCccccceEEeeccccCCCceEEEecC-----CCce
Confidence 6777776542 233333332222 3333322211110111 11 1233445443 3334444432 2677
Q ss_pred EeCC-CCceeEEeecccc----------------c-------ceeEEEE----eCCCCEEEEEeCCCcEEEEeCCCCcee
Q 001477 572 WNES-EGAIKRTYSGFRK----------------R-------SLGVVQF----DTTRNRFLAAGDEFQIKFWDMDNMNML 623 (1071)
Q Consensus 572 wd~~-~~~~~~~~~~~~~----------------~-------~v~~~~~----~~~~~~l~~~~~dg~i~iwd~~~~~~~ 623 (1071)
|... .|+.+++..-... . .-..+.| .-.+..+++-++-| |+|+|..+...+
T Consensus 241 Wead~~G~V~~Thqfk~ala~~p~p~i~~~s~esp~~~~~~~~~q~ls~~k~~~l~~~~vLa~te~G-iyv~d~~~~~v~ 319 (726)
T KOG3621|consen 241 WEADFAGEVIKTHQFKDALARPPAPEIPIRSLESPNQRSLPSGTQHLSLSKSSTLHSDRVLAWTEVG-IYVFDSNNSQVY 319 (726)
T ss_pred EEeecceeEEEeeehhhhhccCCCCcccCCCcCCccccCCCCCccccccceeEEeecceEEEeecce-EEEEEeccceEE
Confidence 8654 2444443221100 0 0000111 11122445544444 888888876555
Q ss_pred EEEecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCChhhhhhhh
Q 001477 624 TTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRML 671 (1071)
Q Consensus 624 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~ 671 (1071)
.-.+... .|..+ +..|+-|++-..||.+++..+.+..+.+..+
T Consensus 320 l~se~~~---DI~dV--s~~~neiFvL~~d~~l~~~sv~s~qr~l~~l 362 (726)
T KOG3621|consen 320 LWSEGGH---DILDV--SHCGNEIFVLNLDRGLKVESVASRQRKLESL 362 (726)
T ss_pred EeecCCC---ceeEE--eecCceEEEEecCCceeEEEeehhHHHHHHH
Confidence 4433221 34444 3457778888888888888888775555443
No 325
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.39 E-value=9.1e-05 Score=86.64 Aligned_cols=279 Identities=11% Similarity=0.173 Sum_probs=158.2
Q ss_pred CCCeEEEEeecCCCeEEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeEEEECCCCCEEEE
Q 001477 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1071)
Q Consensus 346 ~~~V~~~~fsp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~la~ 425 (1071)
.+.|.++.|..++.. +..+..+|.|.+-|.++..... ...-.+.|.+++||||++.++.
T Consensus 68 d~~i~s~~fl~d~~~-i~v~~~~G~iilvd~et~~~ei--------------------vg~vd~GI~aaswS~Dee~l~l 126 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNS-ICVITALGDIILVDPETLELEI--------------------VGNVDNGISAASWSPDEELLAL 126 (1265)
T ss_pred CcceEEEEEecccce-EEEEecCCcEEEEcccccceee--------------------eeeccCceEEEeecCCCcEEEE
Confidence 458999999999985 4567789999999888765432 2335678999999999999999
Q ss_pred EeCCCeEEEEEecCCCccceeeEeec---ccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccCCceeEEecCCCCCeEE
Q 001477 426 AFSKHIVHLYTYNPTGELRQHLEIDA---HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYS 502 (1071)
Q Consensus 426 ~~~dg~i~iwd~~~~~~~~~~~~~~~---h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~ 502 (1071)
.+..+++.+-+-. -..+... .+.. ..+..-.+-|-....+ +-|+ .|....-+.......-......+.=++
T Consensus 127 iT~~~tll~mT~~-f~~i~E~-~L~~d~~~~sk~v~VGwGrkeTq---frgs-~gr~~~~~~~~~ek~~~~~~~~~~~~~ 200 (1265)
T KOG1920|consen 127 ITGRQTLLFMTKD-FEPIAEK-PLDADDERKSKFVNVGWGRKETQ---FRGS-EGRQAARQKIEKEKALEQIEQDDHKTS 200 (1265)
T ss_pred EeCCcEEEEEecc-ccchhcc-ccccccccccccceeccccccee---eecc-hhhhcccccccccccccchhhccCCce
Confidence 9888877665421 1111110 1100 0111222333222221 1111 111111110000000000001122345
Q ss_pred EEecccCCccEEEEEe----cC-CeEEEEEcCCCceeEEecCCCCcEEEEEEccCCCEEEEeccCCCCCCeEEEEeCCCC
Q 001477 503 VCPHHKESIQFIFSTA----ID-GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG 577 (1071)
Q Consensus 503 i~~~~~~~~~~l~s~~----~d-~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~ 577 (1071)
|.|- +||.++++.. .+ ..|++||-+ +.....-....+.-.+++|-|.|..+++.....+ ++.|.++.-+ |
T Consensus 201 IsWR--gDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~s-d~~IvffErN-G 275 (1265)
T KOG1920|consen 201 ISWR--GDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTS-DSDIVFFERN-G 275 (1265)
T ss_pred EEEc--cCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCC-CCcEEEEecC-C
Confidence 6665 5668888742 23 789999876 3222222223345568999999999998765443 5578888743 3
Q ss_pred ceeEE----eecccccceeEEEEeCCCCEEEE---EeCCCcEEEEeCCCCcee--EEEecCCCCCCcceEEEcCC-CCEE
Q 001477 578 AIKRT----YSGFRKRSLGVVQFDTTRNRFLA---AGDEFQIKFWDMDNMNML--TTVDADGGLPASPRLRFNKE-GSLL 647 (1071)
Q Consensus 578 ~~~~~----~~~~~~~~v~~~~~~~~~~~l~~---~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~v~~~~~s~~-~~~l 647 (1071)
-.-.. +..... .+..++|+.++..|+. ......|++|-..+..-. +.+..... .-+.|+|. ...+
T Consensus 276 L~hg~f~l~~p~de~-~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~----~~~~W~p~~~~~L 350 (1265)
T KOG1920|consen 276 LRHGEFVLPFPLDEK-EVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQK----ALLMWDPVTEKTL 350 (1265)
T ss_pred ccccccccCCccccc-chheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEecccc----ccccccCCCceeE
Confidence 32222 222222 4889999999999888 445556999998875532 33333222 22788883 3344
Q ss_pred EEEeCCCcEEEEEc
Q 001477 648 AVTTSDNGIKILAN 661 (1071)
Q Consensus 648 ~~~~~dg~v~iw~~ 661 (1071)
.+-..+|...+++.
T Consensus 351 ~v~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 351 HVLRESGQRLVRDF 364 (1265)
T ss_pred EEEecCCcEEEEEE
Confidence 44446777666664
No 326
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.36 E-value=2e-05 Score=91.98 Aligned_cols=236 Identities=6% Similarity=0.058 Sum_probs=145.2
Q ss_pred CCCceEEEEEecccchhhhccccceeEEEecccccCCCCCccceeecceeccCCCCCccccccCCCCCCCCCeEEEEEec
Q 001477 771 AASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK 850 (1071)
Q Consensus 771 ~~~~v~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~v~~s~ 850 (1071)
....|.++.|..++..++.+..+|.|.+-|..+ .... ..|. - ...|.+++|||
T Consensus 67 gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et----------------------~~~e---ivg~-v-d~GI~aaswS~ 119 (1265)
T KOG1920|consen 67 GDDEIVSVQFLADTNSICVITALGDIILVDPET----------------------LELE---IVGN-V-DNGISAASWSP 119 (1265)
T ss_pred CCcceEEEEEecccceEEEEecCCcEEEEcccc----------------------ccee---eeee-c-cCceEEEeecC
Confidence 346899999999999999999999888764432 2111 1110 1 67899999999
Q ss_pred CCcEEEEEeCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEccCCe-----EE------EE
Q 001477 851 NDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE-----VK------TK 919 (1071)
Q Consensus 851 d~~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~-----~~------~~ 919 (1071)
|++.++....+...++...+..++....-+. .-.+ .+ ..+.+++.+.=.-+.-..|+ .+ ..
T Consensus 120 Dee~l~liT~~~tll~mT~~f~~i~E~~L~~------d~~~-~s-k~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~ 191 (1265)
T KOG1920|consen 120 DEELLALITGRQTLLFMTKDFEPIAEKPLDA------DDER-KS-KFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQ 191 (1265)
T ss_pred CCcEEEEEeCCcEEEEEeccccchhcccccc------cccc-cc-ccceecccccceeeecchhhhcccccccccccccc
Confidence 9999999985444444445555544332111 1111 12 22333333322222211111 01 10
Q ss_pred ecCcCCCeeEEEEcCCCCEEEEEe----CC-CcEEEEECCCCceeeeeeecCCCCCCCCCCCceEEEEccCCCEEEEE--
Q 001477 920 LKGHQNRITGLAFSPTLNALVSSG----AD-AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-- 992 (1071)
Q Consensus 920 l~~h~~~v~~l~~s~d~~~l~s~~----~d-~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-- 992 (1071)
..-|+ .=+.|.|--||.++|+.. .+ +.|+|||-+ |. +.....+.. ..-.+++|-|.|.++++-
T Consensus 192 ~~~~~-~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~------Lns~se~~~--~l~~~LsWkPsgs~iA~iq~ 261 (1265)
T KOG1920|consen 192 IEQDD-HKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GA------LNSTSEPVE--GLQHSLSWKPSGSLIAAIQC 261 (1265)
T ss_pred hhhcc-CCceEEEccCCcEEEEEEEeccCCceeEEEeccc-ch------hhcccCccc--ccccceeecCCCCeEeeeee
Confidence 11122 235799999999999833 33 789999988 32 111111110 234689999999999983
Q ss_pred --ECCeEEEEeCCCCceeecCCCCCCC-CCeeEEEEecCCcEEEE---EeCCCeEEEEEcCCCeE
Q 001477 993 --HESQISVYDSKLECSRSWSPKDALP-APISSAIYSCDGLLVYA---GFCDGAIGVFDAETLRF 1051 (1071)
Q Consensus 993 --~d~~i~vwd~~~~~~~~~~~~~~h~-~~v~~~~~s~dg~~l~t---~~~Dg~i~vwd~~~~~~ 1051 (1071)
+|+.|.+|.-++-....+....+-+ .+|..++|..++..|++ ......|++|-+.+-..
T Consensus 262 ~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhW 326 (1265)
T KOG1920|consen 262 KTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHW 326 (1265)
T ss_pred cCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEE
Confidence 5778999998777666544332223 34999999999999997 44445599999987663
No 327
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.32 E-value=4.5e-06 Score=84.42 Aligned_cols=172 Identities=15% Similarity=0.183 Sum_probs=121.2
Q ss_pred HHHHHHHHHHhhhccHHHHHHHHHHHcCCCc--------cHHHHHHHhhcccHHHHHHHhcCcCcccccchhhHHHHHHH
Q 001477 6 RELVFLILQFLDEEKFKETVHKLEQESGFFF--------NMKHFEDQVQAGEWDEVERYLCGFTKVEDNRYSMKIFFEIR 77 (1071)
Q Consensus 6 ~e~~rli~q~L~~~g~~~s~~~L~~Esg~~~--------~~~~l~~~i~~g~w~~~~~~l~~l~~~~~~~~~~~~~~~i~ 77 (1071)
.-+-|+|..||..+||..+|..|-++|.+.- ++...++++++|+...|+...+.-...-. +....+-|.++
T Consensus 116 ~~l~r~vvdhmlr~gy~~~A~~L~K~s~ledlvD~Dv~~~~~~I~~sll~~~l~~~Lswc~ehk~~Lk-K~~S~lEf~lR 194 (389)
T KOG0396|consen 116 NKLDRFVVDHMLRNGYFGAAVLLGKKSQLEDLVDSDVYKRAYGIRDSLLAGELEPALSWCKEHKVELK-KEESSLEFQLR 194 (389)
T ss_pred HHHHHHHHHHHHHcCchhHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH-hccchhhhHHH
Confidence 3467999999999999999999999999762 37889999999999999877654321111 11224779999
Q ss_pred HHHHHHHhcccCHHHHHHHHHhhcccccccCHHHHHHHHHhhcccCccchhhhccCCCchhHHHHHHH--HHHhhcccCc
Q 001477 78 KQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLTLDNFRQNEQLSKYGDTKSARNIMLV--ELKKLIEANP 155 (1071)
Q Consensus 78 ~~~~lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~R~~l~~--~l~~~~~~~~ 155 (1071)
-|.|+||+..+++.+|+.+.++.+.|...-..++++....++.++.......+.. .....|=..+. .++.+.+-
T Consensus 195 lQefIELi~~~~~~~Ai~~akk~f~~~~~~~~~~Lk~a~g~laF~~~t~~sky~~--l~~~~rw~~l~~lF~s~a~~l-- 270 (389)
T KOG0396|consen 195 LQEFIELIKVDNYDKAIAFAKKHFAPWAKSHKSDLKLAMGLLAFPKYTSSSKYLN--LLTADRWSVLADLFLSEALKL-- 270 (389)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhcCccccCcccccC--cccHHHHHHHHHHhhHHHHHH--
Confidence 9999999999999999999999999998778899999999999876654332211 12233333333 23444331
Q ss_pred cccccCCCCCCcchHHHHHHHHHHHHHH-hhCCCC
Q 001477 156 LFRDKLSFPSFKSSRLRTLINQSLNWQH-QLCKNP 189 (1071)
Q Consensus 156 ~~~~~~~~~~~p~~rL~~ll~qa~~~q~-~~~~~~ 189 (1071)
+.+|+-| +|..+|+-.+..|. -.|...
T Consensus 271 -----~~i~~~~--~L~~~l~~GLsalKTp~c~~~ 298 (389)
T KOG0396|consen 271 -----FGIPINP--ALTIYLQAGLSALKTPRCLND 298 (389)
T ss_pred -----hCCCCCc--HHHHHHHhhhhhccccccccc
Confidence 1233223 47777776666664 335544
No 328
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.32 E-value=2.3e-06 Score=59.14 Aligned_cols=39 Identities=23% Similarity=0.494 Sum_probs=36.9
Q ss_pred CeEEEEEeCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEE
Q 001477 871 FKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYN 910 (1071)
Q Consensus 871 ~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd 910 (1071)
++++.++.+|.+.|++++|+| ++.+|++|+.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~-~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSP-DGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEET-TSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEec-ccccceeeCCCCEEEEEC
Confidence 467899999999999999999 899999999999999997
No 329
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.32 E-value=0.0014 Score=69.42 Aligned_cols=280 Identities=13% Similarity=0.110 Sum_probs=139.3
Q ss_pred EEeecCCCeEEEEEcCCCe--EEEEecCCCcccccccceeecccccccchhhhhcccCC-CCeeEEEECCCCCEEEEEeC
Q 001477 352 MDFHPQQQTILLVGTNVGD--ISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAA-ISVNRCVWGPDGLMLGVAFS 428 (1071)
Q Consensus 352 ~~fsp~g~~lla~gs~dg~--i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~-~~v~~~~~spd~~~la~~~~ 428 (1071)
=+|.+||+.||+.+..||. +.+-|+.+++... |+... .......++|+++.++....
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~Q--------------------LTdg~g~~~~g~~~s~~~~~~~Yv~~ 100 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQ--------------------LTDGPGDNTFGGFLSPDDRALYYVKN 100 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE-----------------------SS-B-TTT-EE-TTSSEEEEEET
T ss_pred CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEE--------------------CccCCCCCccceEEecCCCeEEEEEC
Confidence 3678999989998887775 4555677776543 33322 22335677899898877766
Q ss_pred CCeEEEEEecCCCccceeeEeecccCCEEEEEEe--cCCCceEEEEEe----------------------CCCcEEEEEc
Q 001477 429 KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFA--HPNKQLCIVTCG----------------------DDKMIKVWDV 484 (1071)
Q Consensus 429 dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s--~d~~~~~l~s~~----------------------~d~~i~iwd~ 484 (1071)
...++-.|+++.+... .+......+-...|. .|+. .++..- ..+.|.--|+
T Consensus 101 ~~~l~~vdL~T~e~~~---vy~~p~~~~g~gt~v~n~d~t--~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl 175 (386)
T PF14583_consen 101 GRSLRRVDLDTLEERV---VYEVPDDWKGYGTWVANSDCT--KLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDL 175 (386)
T ss_dssp TTEEEEEETTT--EEE---EEE--TTEEEEEEEEE-TTSS--EEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEET
T ss_pred CCeEEEEECCcCcEEE---EEECCcccccccceeeCCCcc--EEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEEC
Confidence 7788888998865432 344445555556664 3444 333221 1234555677
Q ss_pred cCCceeEEecCCCCCeEEEEecccCCccEEEEEec---CCe-EEEEEcCCCce-eEEecC--CCCcEEEEEEccCCCEEE
Q 001477 485 VAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI---DGK-IKAWLYDYLGS-RVDYDA--PGNWCTMMAYSADGTRLF 557 (1071)
Q Consensus 485 ~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~---d~~-i~vwd~~~~~~-~~~~~~--~~~~i~~~~~s~~~~~l~ 557 (1071)
.+|+....+. -...+.-+.|+|..+ ..|+.|-+ +.. -|+|-+++... ...+.. ....+.-=-|.|||..+.
T Consensus 176 ~tG~~~~v~~-~~~wlgH~~fsP~dp-~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~ 253 (386)
T PF14583_consen 176 KTGERKVVFE-DTDWLGHVQFSPTDP-TLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIW 253 (386)
T ss_dssp TT--EEEEEE-ESS-EEEEEEETTEE-EEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EE
T ss_pred CCCceeEEEe-cCccccCcccCCCCC-CEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEE
Confidence 7777544443 456677888998753 45544432 221 25665554332 222222 223455556899999887
Q ss_pred Eecc-CCCCCCeEEEEeCCCCceeEEeecccccceeEEEEeCCCCEEEEEeCC----------------CcEEEEeCCCC
Q 001477 558 SCGT-SKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE----------------FQIKFWDMDNM 620 (1071)
Q Consensus 558 ~~~~-~~d~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----------------g~i~iwd~~~~ 620 (1071)
.-+. .+..+..|.-+|+.+++........ .......++||++++-=|.| --|+++++..+
T Consensus 254 y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p---~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~ 330 (386)
T PF14583_consen 254 YDSYTPGGQDFWIAGYDPDTGERRRLMEMP---WCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAG 330 (386)
T ss_dssp EEEEETTT--EEEEEE-TTT--EEEEEEE----SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTT
T ss_pred EEeecCCCCceEEEeeCCCCCCceEEEeCC---ceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccC
Confidence 6443 2233556888888887654332221 23345567888888763322 15677888876
Q ss_pred ceeEEEecC--------CCCCCcceEEEcCCCCEEEEEeC-CCcEEEEEc
Q 001477 621 NMLTTVDAD--------GGLPASPRLRFNKEGSLLAVTTS-DNGIKILAN 661 (1071)
Q Consensus 621 ~~~~~~~~~--------~~~~~v~~~~~s~~~~~l~~~~~-dg~v~iw~~ 661 (1071)
......... .....-....|+|||++++..|+ .|...||-+
T Consensus 331 ~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v 380 (386)
T PF14583_consen 331 RFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLV 380 (386)
T ss_dssp EEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred ceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEE
Confidence 654322210 01112256899999998776655 677666654
No 330
>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10. RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].
Probab=98.31 E-value=2.7e-06 Score=79.95 Aligned_cols=134 Identities=20% Similarity=0.224 Sum_probs=98.0
Q ss_pred HHHHHHHhhcccHHHHHHHhcCcCcccccchhhHHHHHHHHHHHHHHhcccCHHHHHHHHHhhcccccccCHHHHHHHHH
Q 001477 38 MKHFEDQVQAGEWDEVERYLCGFTKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQ 117 (1071)
Q Consensus 38 ~~~l~~~i~~g~w~~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~ 117 (1071)
...++++|++|+++.|++.++...+.-... ...+.|.|+.|+|+|+|..++..+|+.+.|+.+.|......+.+..+..
T Consensus 5 r~~I~~~I~~g~i~~Ai~w~~~~~~~l~~~-~~~L~f~L~~q~fiell~~~~~~~Ai~y~r~~l~~~~~~~~~~l~~~~~ 83 (145)
T PF10607_consen 5 RKKIRQAILNGDIDPAIEWLNENFPELLKR-NSSLEFELRCQQFIELLREGDIMEAIEYARKHLSPFNDEFLEELKKLMS 83 (145)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHcCHHHHhc-CCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 578899999999999999998764322111 1348899999999999999999999999999887664335677888888
Q ss_pred hhcccCccc--hhhhccCCCchhHHHHHHHHHHhhcccCccccccCCCCCCc-chHHHHHHHHHHHHH
Q 001477 118 LLTLDNFRQ--NEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFK-SSRLRTLINQSLNWQ 182 (1071)
Q Consensus 118 ll~~~~~~~--~~~~~~~~~~~~~R~~l~~~l~~~~~~~~~~~~~~~~~~~p-~~rL~~ll~qa~~~q 182 (1071)
+|..+.... ...+..+-+ ..+|+.+++.+.+.+-..- . +| .+.|..++++....+
T Consensus 84 lL~~~~~~~~~~s~~~~l~~-~~~~~~la~~~~~~~l~~~------~---~~~~s~L~~~~~~g~~~l 141 (145)
T PF10607_consen 84 LLAYPDPEEPLPSPYKELLS-PERREELAEEFNSAILKSY------G---LPKESPLEVILKAGLSAL 141 (145)
T ss_pred HHHcCCcccccchHHHHHhC-hHHHHHHHHHHHHHHHHHh------C---cCCCCHHHHHHHHHHHHh
Confidence 888776654 223333322 3778999999988765422 1 33 567888888776544
No 331
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.29 E-value=3.9e-05 Score=86.17 Aligned_cols=203 Identities=16% Similarity=0.167 Sum_probs=139.5
Q ss_pred EEEecCCcEEEEEe-CCeEEEEECCCCeEEEEEeCCCCC-eEEEEEcCCCCCEEEEEeCCC-----eEEEEEccCC----
Q 001477 846 IALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPA-ATFLAFHPQDNNIIAIGMEDS-----SVQIYNVRVD---- 914 (1071)
Q Consensus 846 v~~s~d~~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~-i~~l~~sp~~~~~la~g~~dg-----~v~vwd~~~~---- 914 (1071)
-++++.+..+|.|+ +|.|.+.+- +.+.++.+..+... |..+.... +..+|++.+.|+ .|+||+++.-
T Consensus 29 sc~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~-~~~~L~sv~Ed~~~np~llkiw~lek~~~n~ 106 (933)
T KOG2114|consen 29 SCCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILN-KQNFLFSVGEDEQGNPVLLKIWDLEKVDKNN 106 (933)
T ss_pred eEEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhccc-CceEEEEEeecCCCCceEEEEecccccCCCC
Confidence 35678899999999 999998874 45666788887777 44444443 556888777665 4999998742
Q ss_pred --eEEE--EecC-----cCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeecCCCCCCCCCCCceEEEEccC
Q 001477 915 --EVKT--KLKG-----HQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHND 985 (1071)
Q Consensus 915 --~~~~--~l~~-----h~~~v~~l~~s~d~~~l~s~~~d~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 985 (1071)
+++. .+.. ...++.+++.|.+-+.+|.|-.||.|..+.-+--........-...+. .+|+.+++-.|
T Consensus 107 sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~----~pITgL~~~~d 182 (933)
T KOG2114|consen 107 SPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGK----EPITGLALRSD 182 (933)
T ss_pred CcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCC----CCceeeEEecC
Confidence 2331 2222 245688999999999999999999999885333221111111112222 67999999999
Q ss_pred CCE-EEEEECCeEEEEeCCCCceeecCCCCCCCCCeeEEEEecCCcEEEEEeCCCeEEEEEcCCCeEEEEeC
Q 001477 986 QTH-LLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIG 1056 (1071)
Q Consensus 986 g~~-l~~~~d~~i~vwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~ 1056 (1071)
++- +.++.-..|.+|.++++. ........|...+.|.+|++....+++++ +..+.+|+.+.......+.
T Consensus 183 ~~s~lFv~Tt~~V~~y~l~gr~-p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 183 GKSVLFVATTEQVMLYSLSGRT-PSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred CceeEEEEecceeEEEEecCCC-cceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeeec
Confidence 987 555677889999997665 22333455678888999887655466555 5579999988766666665
No 332
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.28 E-value=1.6e-06 Score=86.22 Aligned_cols=139 Identities=17% Similarity=0.218 Sum_probs=105.4
Q ss_pred eEEeecCCCCeEEEEeecCCCeEEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeEEEECC
Q 001477 339 VVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP 418 (1071)
Q Consensus 339 ~~~~~~h~~~V~~~~fsp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~sp 418 (1071)
+.+.+..++.|.++.|.-.++ ++..|..+|.|...|+..+.+-.. |- . ..--|...|+++..-.
T Consensus 245 ~~qsf~sksDVfAlQf~~s~n-Lv~~GcRngeI~~iDLR~rnqG~~-----~~---------a-~rlyh~Ssvtslq~Lq 308 (425)
T KOG2695|consen 245 HQQSFQSKSDVFALQFAGSDN-LVFNGCRNGEIFVIDLRCRNQGNG-----WC---------A-QRLYHDSSVTSLQILQ 308 (425)
T ss_pred cccccccchhHHHHHhcccCC-eeEecccCCcEEEEEeeecccCCC-----cc---------e-EEEEcCcchhhhhhhc
Confidence 344455678999999999887 889999999999999986522110 00 0 0124899999999887
Q ss_pred -CCCEEEEEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEE--ecCCCceEEEEEeCCCcEEEEEccCCceeEEecC
Q 001477 419 -DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAF--AHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG 495 (1071)
Q Consensus 419 -d~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~--s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 495 (1071)
++++|.+.+.+|+|.+||++--++......++||...-..+-+ .+... .++++++|...+||.++.|..+.++.-
T Consensus 309 ~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg--~I~s~GdDcytRiWsl~~ghLl~tipf 386 (425)
T KOG2695|consen 309 FSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEG--SIFSVGDDCYTRIWSLDSGHLLCTIPF 386 (425)
T ss_pred cccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccc--eEEEccCeeEEEEEecccCceeeccCC
Confidence 8889999999999999999876664445578888765444444 33344 788999999999999999999887753
No 333
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=5.4e-05 Score=77.45 Aligned_cols=244 Identities=11% Similarity=0.135 Sum_probs=137.4
Q ss_pred CCCCeEEEEeecCCCeEEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeEEEECCCCC-EE
Q 001477 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGL-ML 423 (1071)
Q Consensus 345 h~~~V~~~~fsp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd~~-~l 423 (1071)
+...|..++|||..+-||..++.+..|.|.|+++...... +..+ ..+++++|.-|.. +|
T Consensus 192 ~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vss-------------------y~a~-~~~wSC~wDlde~h~I 251 (463)
T KOG1645|consen 192 EGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSS-------------------YIAY-NQIWSCCWDLDERHVI 251 (463)
T ss_pred cchhhhhhccCccccceeeeeccCceEEEEecccceeeeh-------------------eecc-CCceeeeeccCCccee
Confidence 6778999999999887888999999999999998766543 3345 7899999998655 67
Q ss_pred EEEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEe------cCCCceEEEEEeCCCcEEEEEccC--CceeEEec-
Q 001477 424 GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFA------HPNKQLCIVTCGDDKMIKVWDVVA--GRKQYTFE- 494 (1071)
Q Consensus 424 a~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s------~d~~~~~l~s~~~d~~i~iwd~~~--~~~~~~~~- 494 (1071)
..|-.+|.|.|||++..+.......-+-...+|..++.- +-|. +++..+. .+..|++.- +....+++
T Consensus 252 YaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gg--lLv~~lt--~l~f~ei~~s~~~~p~vlel 327 (463)
T KOG1645|consen 252 YAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGG--LLVFALT--VLQFYEIVFSAECLPCVLEL 327 (463)
T ss_pred EEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccc--eEEeeeh--hhhhhhhhccccCCCccccc
Confidence 777789999999998755432211111122344444332 2343 3443333 245666532 22222222
Q ss_pred CCCCCeEEEEecccCCccEEEEEecCCe------EEE-EEcCCCceeEEe-cCC-CC------cEEEEEEccCCCEEEEe
Q 001477 495 GHEAPVYSVCPHHKESIQFIFSTAIDGK------IKA-WLYDYLGSRVDY-DAP-GN------WCTMMAYSADGTRLFSC 559 (1071)
Q Consensus 495 ~h~~~v~~i~~~~~~~~~~l~s~~~d~~------i~v-wd~~~~~~~~~~-~~~-~~------~i~~~~~s~~~~~l~~~ 559 (1071)
+..+...++...+..+ ..|++.-.+.. |-. -|-..+..+... ..+ +. .-..+.-.++.++++..
T Consensus 328 e~pG~cismqy~~~sn-h~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~ 406 (463)
T KOG1645|consen 328 EPPGICISMQYHGVSN-HLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVV 406 (463)
T ss_pred CCCcceeeeeecCccc-eEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEe
Confidence 2244555565555432 34444332111 000 011111111100 000 00 11122234566777765
Q ss_pred ccCCCCCCeEEEEeCCCCceeEEeecccccceeEEEEeC-CCCEEEEEeCCCcEEEEeCC
Q 001477 560 GTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT-TRNRFLAAGDEFQIKFWDMD 618 (1071)
Q Consensus 560 ~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~ 618 (1071)
+. ..+.+.+||..+++.++++.... +|..++... +++-++..=.|..++|+..+
T Consensus 407 gd---~tn~lil~D~~s~evvQ~l~~~e--pv~Dicp~~~n~~syLa~LTd~~v~Iyk~e 461 (463)
T KOG1645|consen 407 GD---STNELILQDPHSFEVVQTLALSE--PVLDICPNDTNGSSYLALLTDDRVHIYKNE 461 (463)
T ss_pred cC---CcceeEEeccchhheeeecccCc--ceeecceeecCCcchhhheecceEEEEecC
Confidence 53 46779999999999999887763 566655443 33333333345577877654
No 334
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=98.26 E-value=0.02 Score=66.35 Aligned_cols=578 Identities=12% Similarity=0.130 Sum_probs=276.9
Q ss_pred CeEEEEeecCCCeEEEEEcCCCeEEEEecC-CCcccccccceeecccccccchhhhhcccCCCCeeEEEECCCCCEEEEE
Q 001477 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVG-SRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA 426 (1071)
Q Consensus 348 ~V~~~~fsp~g~~lla~gs~dg~i~iwd~~-~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~la~~ 426 (1071)
-+..-...++|.++ ..|..+|.+...-+. +++......+++- +-+...-..|+..-++| .|.+|
T Consensus 259 ~~~~~~v~~~~~~y-Ll~d~~G~Lf~l~l~~~~e~~s~~~lkve-------------~lge~siassi~~L~ng-~lFvG 323 (1096)
T KOG1897|consen 259 IVCYGRVDLQGSRY-LLGDEDGMLFKLLLSHTGETVSGLDLKVE-------------YLGETSIASSINYLDNG-VLFVG 323 (1096)
T ss_pred EEEcccccCCccEE-EEecCCCcEEEEEeecccccccceEEEEE-------------ecCCcchhhhhhcccCc-eEEEe
Confidence 34445567788755 458889988776665 5544332111110 22334445566666555 67778
Q ss_pred eCCCeEEEEEecCCCcc----ceeeEeecccCCEEEEEEecCC---CceEEEEEe---CCCcEEEEEccCCc---eeEEe
Q 001477 427 FSKHIVHLYTYNPTGEL----RQHLEIDAHVGGVNDIAFAHPN---KQLCIVTCG---DDKMIKVWDVVAGR---KQYTF 493 (1071)
Q Consensus 427 ~~dg~i~iwd~~~~~~~----~~~~~~~~h~~~v~~~~~s~d~---~~~~l~s~~---~d~~i~iwd~~~~~---~~~~~ 493 (1071)
|.-|.=.+-.+.+.... ....++ ..-+||.+++.-... +. -++||+ .||++++....-|- ..-.+
T Consensus 324 S~~gdSqLi~L~~e~d~gsy~~ilet~-~NLgPI~Dm~Vvd~d~q~q~-qivtCsGa~kdgSLRiiRngi~I~e~A~i~l 401 (1096)
T KOG1897|consen 324 SRFGDSQLIKLNTEPDVGSYVVILETF-VNLGPIVDMCVVDLDRQGQG-QIVTCSGAFKDGSLRIIRNGIGIDELASIDL 401 (1096)
T ss_pred ccCCceeeEEccccCCCCchhhhhhhc-ccccceeeEEEEeccccCCc-eEEEEeCCCCCCcEEEEecccccceeeEeec
Confidence 77666566665543221 100111 234588888875433 32 466654 58899988533221 11233
Q ss_pred cCCCCCeEEEE--ecccCCccEEEEEecCCeEEEEEcCCCceeEEecCCCCcEEEEEEc-cCCCEEEEeccCCCCCCeEE
Q 001477 494 EGHEAPVYSVC--PHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYS-ADGTRLFSCGTSKEGESHLV 570 (1071)
Q Consensus 494 ~~h~~~v~~i~--~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s-~~~~~l~~~~~~~d~~~~i~ 570 (1071)
.| -..++.+. +.+..| ++++.+-.+.+ ++..+...-......+-......+..| -.|+.|+-.. ...|+
T Consensus 402 ~G-ikg~w~lk~~v~~~~d-~ylvlsf~~eT-rvl~i~~e~ee~~~~gf~~~~~Tif~S~i~g~~lvQvT-----s~~iR 473 (1096)
T KOG1897|consen 402 PG-IKGMWSLKSMVDENYD-NYLVLSFISET-RVLNISEEVEETEDPGFSTDEQTIFCSTINGNQLVQVT-----SNSIR 473 (1096)
T ss_pred CC-ccceeEeeccccccCC-cEEEEEeccce-EEEEEccceEEeccccccccCceEEEEccCCceEEEEe-----cccEE
Confidence 44 34566666 555555 35555444333 333332221111111111122222222 2333343332 23377
Q ss_pred EEeCCCCceeEEeecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCC------
Q 001477 571 EWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEG------ 644 (1071)
Q Consensus 571 iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~------ 644 (1071)
+++-. .....+.... .++....+.+...++.++.++.+...++..+. +.....+.-...|.|+.++|-|
T Consensus 474 l~ss~--~~~~~W~~p~--~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~-l~e~~~~~~e~evaCLDisp~~d~~~~s 548 (1096)
T KOG1897|consen 474 LVSSA--GLRSEWRPPG--KITIGVVSANASQVVVAGGGLALFYLEIEDGG-LREVSHKEFEYEVACLDISPLGDAPNKS 548 (1096)
T ss_pred EEcch--hhhhcccCCC--ceEEEEEeecceEEEEecCccEEEEEEeeccc-eeeeeeheecceeEEEecccCCCCCCcc
Confidence 77644 1222222222 23334444455567777777777777777655 3333333334578999999742
Q ss_pred CEEEEEeCCCcEEEEEcCChhhhhhhhcCCccccccCCCCCCCCCCccccccCCCCccccccCCCCCCCCCCCCcccccc
Q 001477 645 SLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISS 724 (1071)
Q Consensus 645 ~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 724 (1071)
+++++|..+..+.+.-......... |.
T Consensus 549 ~~~aVG~Ws~~~~~l~~~pd~~~~~----~~------------------------------------------------- 575 (1096)
T KOG1897|consen 549 RLLAVGLWSDISMILTFLPDLILIT----HE------------------------------------------------- 575 (1096)
T ss_pred eEEEEEeecceEEEEEECCCcceee----ee-------------------------------------------------
Confidence 2677777665555443221100000 00
Q ss_pred cCCCCcccccccccccccccCccceeccCCCCCcccceeeecCCCcCCCceEEEEEecccchhhhccccceeEEEecccc
Q 001477 725 LGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRT 804 (1071)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~~~~~dg~v~vw~~~~~ 804 (1071)
++. ...-...|.-..|-.|..+|.++..||.+.-|.+...
T Consensus 576 --------------------------~l~--------------~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~ 615 (1096)
T KOG1897|consen 576 --------------------------QLS--------------GEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDIN 615 (1096)
T ss_pred --------------------------ccC--------------CCccchheeeEEeeccceEEEEEcCCceEEEEEEEcc
Confidence 000 0001122333444455677888888887776655432
Q ss_pred --cCCCCCc-cceee--cceeccCC------------------CCCccccccCCCCCCCCCeEEE-EEe--cCCcEEEEE
Q 001477 805 --ERNPSGK-ATANV--APQLWQPP------------------SGTLMTNDINESKPTEESAACI-ALS--KNDSYVMSA 858 (1071)
Q Consensus 805 --~~~~~g~-~~~~~--~~~~~~~~------------------~~~~~~~~~~~~~h~~~~v~~v-~~s--~d~~~la~~ 858 (1071)
..+...+ ..... .++-++.. ++++....+.- ..+..+ .|+ .-...++++
T Consensus 616 tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~-----kev~~~c~f~s~a~~d~l~~~ 690 (1096)
T KOG1897|consen 616 TGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSL-----KEVNHMCPFNSDAYPDSLASA 690 (1096)
T ss_pred cceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccch-----HHhhhhcccccccCCceEEEe
Confidence 1111110 11111 11111111 11111111100 000111 111 122356666
Q ss_pred eCCeEEEEECCCCeEE--EEEeCCCCCeEEEEEcCCCCCEEEEEeC-----------C---CeEEEEEccCCeEEEEec-
Q 001477 859 SGGKVSLFNMMTFKVM--TMFMSPPPAATFLAFHPQDNNIIAIGME-----------D---SSVQIYNVRVDEVKTKLK- 921 (1071)
Q Consensus 859 ~dg~i~vwd~~~~~~~--~~~~~~~~~i~~l~~sp~~~~~la~g~~-----------d---g~v~vwd~~~~~~~~~l~- 921 (1071)
+.+.+++..++.-+.+ +++. -......+++.+ ....+++.+. . ..++++|-.|-+.+...+
T Consensus 691 ~~~~l~i~tid~iqkl~irtvp-l~~~prrI~~q~-~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef 768 (1096)
T KOG1897|consen 691 NGGALTIGTIDEIQKLHIRTVP-LGESPRRICYQE-SSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEF 768 (1096)
T ss_pred cCCceEEEEecchhhcceeeec-CCCChhheEecc-cceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccc
Confidence 6677777766543222 2222 222345566665 3444443321 1 136666666555433221
Q ss_pred -Cc--CCCeeEEEEcCC-CCEEEEEe----------CCCcEEEEECCCCceeeeeeecCCCCCCCCCCCceEEEEccCCC
Q 001477 922 -GH--QNRITGLAFSPT-LNALVSSG----------ADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQT 987 (1071)
Q Consensus 922 -~h--~~~v~~l~~s~d-~~~l~s~~----------~d~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~ 987 (1071)
.. .-.|.+..|..| +.+++.|. ..|.|.++.+..+..++........| .+ .+.---+.
T Consensus 769 ~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~G------av--~aL~~fng 840 (1096)
T KOG1897|consen 769 ERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKG------AV--YALVEFNG 840 (1096)
T ss_pred cccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeecc------ce--eehhhhCC
Confidence 11 113455568887 67777665 23678888877744333222222221 11 22222233
Q ss_pred EEEEEECCeEEEEeCCCC-ceeecCCCCCCCCCeeEEEEecCCcEEEEEeCCCeEEE--EEcCCCeEEEEeCCCcccCcc
Q 001477 988 HLLVVHESQISVYDSKLE-CSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGV--FDAETLRFRCRIGPSAYIPTY 1064 (1071)
Q Consensus 988 ~l~~~~d~~i~vwd~~~~-~~~~~~~~~~h~~~v~~~~~s~dg~~l~t~~~Dg~i~v--wd~~~~~~~~~~~~~~~~~~~ 1064 (1071)
.+++|-...|++|+++.+ .++.. ..|..++..+...-.|..+++|..-+++.+ |+-..|.+.- -+.-+-|.|
T Consensus 841 kllA~In~~vrLye~t~~~eLr~e---~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~e--vArD~~p~W 915 (1096)
T KOG1897|consen 841 KLLAGINQSVRLYEWTTERELRIE---CNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEE--VARDYNPNW 915 (1096)
T ss_pred eEEEecCcEEEEEEccccceehhh---hcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEE--eehhhCccc
Confidence 455566778999999444 44433 334788999999999999999998887666 4444443432 223344555
Q ss_pred ceee
Q 001477 1065 AVRL 1068 (1071)
Q Consensus 1065 ~~~~ 1068 (1071)
-...
T Consensus 916 mtav 919 (1096)
T KOG1897|consen 916 MTAV 919 (1096)
T ss_pred eeeE
Confidence 4443
No 335
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.26 E-value=0.0011 Score=73.11 Aligned_cols=143 Identities=15% Similarity=0.171 Sum_probs=81.9
Q ss_pred CCCeEEEEEecCCcEEEEE-e--C---CeEEEEECCCCeEEEEEeC-CCC---CeEEEEEc-CCCCCEEEEEeCCCe--E
Q 001477 840 EESAACIALSKNDSYVMSA-S--G---GKVSLFNMMTFKVMTMFMS-PPP---AATFLAFH-PQDNNIIAIGMEDSS--V 906 (1071)
Q Consensus 840 ~~~v~~v~~s~d~~~la~~-~--d---g~i~vwd~~~~~~~~~~~~-~~~---~i~~l~~s-p~~~~~la~g~~dg~--v 906 (1071)
...+..+.|++|++.++.. . + -.+.++|..++........ ..+ .-....|. ++++.+|.....||. |
T Consensus 183 ~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hl 262 (353)
T PF00930_consen 183 DYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHL 262 (353)
T ss_dssp SEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEE
T ss_pred ccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEE
Confidence 5678899999999944433 2 2 2377788877654333322 122 22355554 646677777777875 5
Q ss_pred EEEEccCCeEEEEecCcCCCeeE-EEEcCCCCEEE-EEeCCC----cEEEEECC-CCceeeeeeecCCCCCCCCCCCceE
Q 001477 907 QIYNVRVDEVKTKLKGHQNRITG-LAFSPTLNALV-SSGADA----QLCMWSID-KWEKLKSRFIQAPAGRQSPLVGETK 979 (1071)
Q Consensus 907 ~vwd~~~~~~~~~l~~h~~~v~~-l~~s~d~~~l~-s~~~d~----~v~vWd~~-~~~~~~~~~~~~~~~~~~~~~~v~~ 979 (1071)
++++..++. ...+....-.|+. +.++++++.+. ++..+. .|..-++. .++. .++....+. -..
T Consensus 263 y~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~---~~LT~~~~~------~~~ 332 (353)
T PF00930_consen 263 YLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEP---KCLTCEDGD------HYS 332 (353)
T ss_dssp EEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEE---EESSTTSST------TEE
T ss_pred EEEcccccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCe---EeccCCCCC------ceE
Confidence 555655665 4466656666755 67788876555 555422 34444555 3332 233322221 148
Q ss_pred EEEccCCCEEEEE
Q 001477 980 VQFHNDQTHLLVV 992 (1071)
Q Consensus 980 ~~~s~dg~~l~~~ 992 (1071)
+.|||||++++..
T Consensus 333 ~~~Spdg~y~v~~ 345 (353)
T PF00930_consen 333 ASFSPDGKYYVDT 345 (353)
T ss_dssp EEE-TTSSEEEEE
T ss_pred EEECCCCCEEEEE
Confidence 9999999998863
No 336
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.25 E-value=9e-06 Score=90.48 Aligned_cols=162 Identities=16% Similarity=0.151 Sum_probs=116.7
Q ss_pred CCeEEEEEcCCCCCEEEEEeCCCeEEEEEccCCeEEEEecCcCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeee
Q 001477 882 PAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKS 961 (1071)
Q Consensus 882 ~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~~~v~~l~~s~d~~~l~s~~~d~~v~vWd~~~~~~~~~ 961 (1071)
..++|++++ +++++-|+.+|.|++++.+..- .+...|+.. ..+|.+++||+.||+|.|-.+.+.+....
T Consensus 40 D~is~~av~---~~~~~~GtH~g~v~~~~~~~~~--~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~ 108 (846)
T KOG2066|consen 40 DAISCCAVH---DKFFALGTHRGAVYLTTCQGNP--KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQ 108 (846)
T ss_pred hHHHHHHhh---cceeeeccccceEEEEecCCcc--ccccccccc------ccCCceEEEecCCCcEEEeeccCCcccee
Confidence 456778885 4799999999999999976543 344446554 56899999999999999999988664433
Q ss_pred eeecCCCCCCCCCCCceEEEEccC-----CCEEEEEECCeEEEEeCC-CCceeecCCCCCCCCCeeEEEEecCCcEEEEE
Q 001477 962 RFIQAPAGRQSPLVGETKVQFHND-----QTHLLVVHESQISVYDSK-LECSRSWSPKDALPAPISSAIYSCDGLLVYAG 1035 (1071)
Q Consensus 962 ~~~~~~~~~~~~~~~v~~~~~s~d-----g~~l~~~~d~~i~vwd~~-~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~t~ 1035 (1071)
.-.. .++.+++++|| .+.+++|++..+.++.-+ .+..... ..+.-.++|.+++|. |.++|=+
T Consensus 109 ~df~---------rpiksial~Pd~~~~~sk~fv~GG~aglvL~er~wlgnk~~v-~l~~~eG~I~~i~W~--g~lIAWa 176 (846)
T KOG2066|consen 109 YDFK---------RPIKSIALHPDFSRQQSKQFVSGGMAGLVLSERNWLGNKDSV-VLSEGEGPIHSIKWR--GNLIAWA 176 (846)
T ss_pred EecC---------CcceeEEeccchhhhhhhheeecCcceEEEehhhhhcCccce-eeecCccceEEEEec--CcEEEEe
Confidence 2222 56899999998 566777655448887751 1111111 112227899999995 6688877
Q ss_pred eCCCeEEEEEcCCCeEEEEeCCCcccCcccee
Q 001477 1036 FCDGAIGVFDAETLRFRCRIGPSAYIPTYAVR 1067 (1071)
Q Consensus 1036 ~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 1067 (1071)
+.+| |+|||+.+++.+..+.++...++..+.
T Consensus 177 nd~G-v~vyd~~~~~~l~~i~~p~~~~R~e~f 207 (846)
T KOG2066|consen 177 NDDG-VKVYDTPTRQRLTNIPPPSQSVRPELF 207 (846)
T ss_pred cCCC-cEEEeccccceeeccCCCCCCCCcccC
Confidence 6555 899999999999999988876666543
No 337
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.21 E-value=0.00028 Score=77.97 Aligned_cols=164 Identities=13% Similarity=0.104 Sum_probs=94.9
Q ss_pred CceEEEEEecccchhhhccccceeEEEecccccCCCCCccceeecceeccCCCCCccccccCCCCCCCCCeEEEEEecCC
Q 001477 773 SKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKND 852 (1071)
Q Consensus 773 ~~v~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~v~~s~d~ 852 (1071)
+.+.....+++..++++++..|.|.++-+.. ...++..... .....| ...|++++|++|+
T Consensus 77 ~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~-~~p~~~~~~t------------------~~d~~~-~~rVTal~Ws~~~ 136 (726)
T KOG3621|consen 77 GITCVRSVSSVEYLVAAGTASGRVSVFQLNK-ELPRDLDYVT------------------PCDKSH-KCRVTALEWSKNG 136 (726)
T ss_pred ceEEEEEecchhHhhhhhcCCceEEeehhhc-cCCCcceeec------------------cccccC-CceEEEEEecccc
Confidence 3456677888888899999999999986654 2211111111 111126 8899999999999
Q ss_pred cEEEEEe-CCeEEEEECCCC----eEEEEEeCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEccCCe--EEEEecCcCC
Q 001477 853 SYVMSAS-GGKVSLFNMMTF----KVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE--VKTKLKGHQN 925 (1071)
Q Consensus 853 ~~la~~~-dg~i~vwd~~~~----~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~--~~~~l~~h~~ 925 (1071)
..+.+|+ .|+|..-.+++. -..+.+....+.|..+.+.. +.+|++... .-.+++.+.+. .+..-....-
T Consensus 137 ~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q--~~LLVStl~--r~~Lc~tE~eti~QIG~k~R~~~ 212 (726)
T KOG3621|consen 137 MKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQ--SYLLVSTLT--RCILCQTEAETITQIGKKPRKSL 212 (726)
T ss_pred cEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeeccc--ceehHhhhh--hhheeecchhHHHHhcCCCcCCc
Confidence 9999998 799998888762 11223344566788888774 445544332 23344444322 1111110110
Q ss_pred CeeEEEEcCC----CCEEEEEeCCCcEEEEECCC-Cceeee
Q 001477 926 RITGLAFSPT----LNALVSSGADAQLCMWSIDK-WEKLKS 961 (1071)
Q Consensus 926 ~v~~l~~s~d----~~~l~s~~~d~~v~vWd~~~-~~~~~~ 961 (1071)
.-...+|-|. .+-.+.|++-| .|+|..+- |+..++
T Consensus 213 ~~~GACF~~g~~~~q~~~IycaRPG-~RlWead~~G~V~~T 252 (726)
T KOG3621|consen 213 IDFGACFFPGQCKAQKPQIYCARPG-LRLWEADFAGEVIKT 252 (726)
T ss_pred cccceEEeeccccCCCceEEEecCC-CceEEeecceeEEEe
Confidence 0123344443 34455566666 78887754 444433
No 338
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.19 E-value=3.2e-05 Score=87.17 Aligned_cols=183 Identities=10% Similarity=0.094 Sum_probs=128.2
Q ss_pred CCCEEEEEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccCCceeEEecCCCC
Q 001477 419 DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEA 498 (1071)
Q Consensus 419 d~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~ 498 (1071)
++..+.-|+....+..+|+++.+..+ ...-..+.|.-|.. +++ .+.+|...|+|.+-|..+.+.++++..|++
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r---~~~v~a~~v~imR~--Nnr--~lf~G~t~G~V~LrD~~s~~~iht~~aHs~ 218 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETR---TTNVSASGVTIMRY--NNR--NLFCGDTRGTVFLRDPNSFETIHTFDAHSG 218 (1118)
T ss_pred CCcceeecchhhheeeeecccceeee---eeeccCCceEEEEe--cCc--EEEeecccceEEeecCCcCceeeeeecccc
Confidence 45567778888888899999876554 32223334555544 466 789999999999999999999999999999
Q ss_pred CeEEEEecccCCccEEEEEec---------CCeEEEEEcCCCceeEEecCCCCcEEEEEEccCC-CEEEEeccCCCCCCe
Q 001477 499 PVYSVCPHHKESIQFIFSTAI---------DGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADG-TRLFSCGTSKEGESH 568 (1071)
Q Consensus 499 ~v~~i~~~~~~~~~~l~s~~~---------d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~~~d~~~~ 568 (1071)
.|..+... |+.|++++. |..|+|||++..+....+..+.++ .-+.|.|.- ..+++++. .|+
T Consensus 219 siSDfDv~----GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~----sGq 289 (1118)
T KOG1275|consen 219 SISDFDVQ----GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQ----SGQ 289 (1118)
T ss_pred ceeeeecc----CCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEec----ccc
Confidence 99988653 478888874 556899999987776655444332 345566643 34444443 566
Q ss_pred EEEEeCCC-Cce-eEEeeccc-ccceeEEEEeCCCCEEEEEeCCCcEEEEeC
Q 001477 569 LVEWNESE-GAI-KRTYSGFR-KRSLGVVQFDTTRNRFLAAGDEFQIKFWDM 617 (1071)
Q Consensus 569 i~iwd~~~-~~~-~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 617 (1071)
..+-|..+ +.+ ...+..+. +..+..++++++++.++.|..+|.|.+|.-
T Consensus 290 ~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 290 FQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred eeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 77777322 111 22222222 224889999999999999999999999973
No 339
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.18 E-value=0.0021 Score=74.06 Aligned_cols=193 Identities=11% Similarity=0.084 Sum_probs=116.9
Q ss_pred EEEEEeCCCcEEEEEccCCceeEEecCCCC------CeE--EEEecccCCccEEEEEecCCeEEEEEcCCCceeEEecCC
Q 001477 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEA------PVY--SVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP 540 (1071)
Q Consensus 469 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~------~v~--~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~ 540 (1071)
.++.++.++.+.-.|..+|+.+.++..... .+. .+... ++..++.++.++.|..+|.++++........
T Consensus 63 ~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~---~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~ 139 (488)
T cd00216 63 DMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW---DPRKVFFGTFDGRLVALDAETGKQVWKFGNN 139 (488)
T ss_pred EEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc---cCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence 466677789999999999998876653322 010 01111 1257888889999999999999988876654
Q ss_pred CCc--EEEEEEcc--CCCEEEEeccCCC-----CCCeEEEEeCCCCceeEEeeccccc-------------------ce-
Q 001477 541 GNW--CTMMAYSA--DGTRLFSCGTSKE-----GESHLVEWNESEGAIKRTYSGFRKR-------------------SL- 591 (1071)
Q Consensus 541 ~~~--i~~~~~s~--~~~~l~~~~~~~d-----~~~~i~iwd~~~~~~~~~~~~~~~~-------------------~v- 591 (1071)
... -..+.-+| .+..++.++.+.+ .++.++.+|..+|+.+..+...... .+
T Consensus 140 ~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw 219 (488)
T cd00216 140 DQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSW 219 (488)
T ss_pred CCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCcc
Confidence 321 00111111 1244444432211 2577999999999988877553110 01
Q ss_pred eEEEEeCCCCEEEEEeCCC------------------cEEEEeCCCCceeEEEecCCCCC----CcceEEEc----CCCC
Q 001477 592 GVVQFDTTRNRFLAAGDEF------------------QIKFWDMDNMNMLTTVDADGGLP----ASPRLRFN----KEGS 645 (1071)
Q Consensus 592 ~~~~~~~~~~~l~~~~~dg------------------~i~iwd~~~~~~~~~~~~~~~~~----~v~~~~~s----~~~~ 645 (1071)
...++.+.+..++.++.++ .|.-.|.++|+.+...+...+.. ......+. -++.
T Consensus 220 ~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~ 299 (488)
T cd00216 220 ASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGK 299 (488)
T ss_pred CCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCC
Confidence 1244555667788877655 68889999999888765322110 00111111 1333
Q ss_pred ---EEEEEeCCCcEEEEEcCCh
Q 001477 646 ---LLAVTTSDNGIKILANSDG 664 (1071)
Q Consensus 646 ---~l~~~~~dg~v~iw~~~~~ 664 (1071)
.++.++.+|.+..+|..++
T Consensus 300 ~~~~V~~g~~~G~l~ald~~tG 321 (488)
T cd00216 300 PVPAIVHAPKNGFFYVLDRTTG 321 (488)
T ss_pred eeEEEEEECCCceEEEEECCCC
Confidence 5777778888888888887
No 340
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.18 E-value=0.00024 Score=80.07 Aligned_cols=200 Identities=17% Similarity=0.200 Sum_probs=128.6
Q ss_pred EECCCCCEEEEEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCC-----cEEEEEccCC--
Q 001477 415 VWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK-----MIKVWDVVAG-- 487 (1071)
Q Consensus 415 ~~spd~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~-----~i~iwd~~~~-- 487 (1071)
+|++.+..+|.|+.+|.|.+++-.- .....++++...+...-+.-+++. +|++-+.|+ .+++||++.-
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s~----~~~~~fqa~~~siv~~L~~~~~~~-~L~sv~Ed~~~np~llkiw~lek~~~ 104 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSSF----QLIRGFQAYEQSIVQFLYILNKQN-FLFSVGEDEQGNPVLLKIWDLEKVDK 104 (933)
T ss_pred EEcCCCceEEEeeccccEEEecccc----eeeehheecchhhhhHhhcccCce-EEEEEeecCCCCceEEEEecccccCC
Confidence 4788999999999999888877332 222255666666333333444433 677766655 5899998642
Q ss_pred ----ceeE--EecC-----CCCCeEEEEecccCCccEEEEEecCCeEEEEEcCC---CceeEE-ecCCCCcEEEEEEccC
Q 001477 488 ----RKQY--TFEG-----HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY---LGSRVD-YDAPGNWCTMMAYSAD 552 (1071)
Q Consensus 488 ----~~~~--~~~~-----h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~---~~~~~~-~~~~~~~i~~~~~s~~ 552 (1071)
.+++ .+.. ...++.+++++.+- +.+++|-.+|.|..+.-+- ...... ......+|+.+++..+
T Consensus 105 n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l--~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d 182 (933)
T KOG2114|consen 105 NNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDL--KTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSD 182 (933)
T ss_pred CCCcceeeeeeeeccCCCCCCCcceEEEEEccc--cEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecC
Confidence 2331 2222 35678888888653 8999999999999884321 122222 2334559999999999
Q ss_pred CCE-EEEeccCCCCCCeEEEEeCCCCceeEEeecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEe
Q 001477 553 GTR-LFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVD 627 (1071)
Q Consensus 553 ~~~-l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 627 (1071)
++. +++++ ..+|.+|.+....+......+++..++|.++++....+++++. ..+.+|+.....+-..+.
T Consensus 183 ~~s~lFv~T-----t~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 183 GKSVLFVAT-----TEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred CceeEEEEe-----cceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecC-ceEEEEcCCCcceeeeec
Confidence 987 33333 4458999988444333323334448888989887665666554 369999988665555554
No 341
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.12 E-value=0.00017 Score=78.63 Aligned_cols=139 Identities=12% Similarity=0.099 Sum_probs=96.3
Q ss_pred CCccccCCccceeeEEeecCCCCeEEEEeecCCCeEEEEE----cCCCe----EEEEecCCCcccccccceeeccccccc
Q 001477 326 TPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVG----TNVGD----ISLWEVGSRERLAHKPFKVWDISAASM 397 (1071)
Q Consensus 326 ~~~~~~~d~~~~~~~~~~~h~~~V~~~~fsp~g~~lla~g----s~dg~----i~iwd~~~~~~~~~~~~~~~d~~~~~~ 397 (1071)
.+.++......-+.+..........++.||-...+.+.+- +.+|. -.+|++..++.... .
T Consensus 185 Nl~L~~~~~~klEvL~yirTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrv---s--------- 252 (545)
T PF11768_consen 185 NLHLLSCSGGKLEVLSYIRTENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRV---S--------- 252 (545)
T ss_pred cEEEEEecCCcEEEEEEEEecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEE---E---------
Confidence 3445555555566777777777778999997554444332 33443 34566654332110 0
Q ss_pred chhhhhcccCCCCeeEEEECCCCCEEEEEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCC
Q 001477 398 PLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK 477 (1071)
Q Consensus 398 ~~~~~~~~~h~~~v~~~~~spd~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~ 477 (1071)
..--.....|.|++++|+.+.++.|+.||+|.+||...+... +....-..+.++|+|+|. ++++|+..|
T Consensus 253 ----vtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~-----~~ka~~~P~~iaWHp~ga--i~~V~s~qG 321 (545)
T PF11768_consen 253 ----VTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL-----LAKAEFIPTLIAWHPDGA--IFVVGSEQG 321 (545)
T ss_pred ----EEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee-----eeeecccceEEEEcCCCc--EEEEEcCCc
Confidence 011246778999999999999999999999999998875322 223344678999999999 899999999
Q ss_pred cEEEEEccCC
Q 001477 478 MIKVWDVVAG 487 (1071)
Q Consensus 478 ~i~iwd~~~~ 487 (1071)
.+.+||+.-.
T Consensus 322 elQ~FD~ALs 331 (545)
T PF11768_consen 322 ELQCFDMALS 331 (545)
T ss_pred eEEEEEeecC
Confidence 9999998644
No 342
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.08 E-value=0.00014 Score=81.40 Aligned_cols=185 Identities=15% Similarity=0.205 Sum_probs=126.4
Q ss_pred CCCeEEEEEecCCcEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEccCCeEEE
Q 001477 840 EESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKT 918 (1071)
Q Consensus 840 ~~~v~~v~~s~d~~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~ 918 (1071)
...++|.+++ +++++.|. +|.|++++.+.. . .+...|... .. +|.++++|+.||+|.|-.+-+.+...
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~-~-~~~~~~s~~------~~-~Gey~asCS~DGkv~I~sl~~~~~~~ 107 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGN-P-KTNFDHSSS------IL-EGEYVASCSDDGKVVIGSLFTDDEIT 107 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCCc-c-ccccccccc------cc-CCceEEEecCCCcEEEeeccCCccce
Confidence 4556666664 57999999 999999998643 3 333334433 34 89999999999999999999988777
Q ss_pred EecCcCCCeeEEEEcCC-----CCEEEEEeCCCcEEEEECCCCceeeeeeecCCCCCCCCCCCceEEEEccCCCEEEEEE
Q 001477 919 KLKGHQNRITGLAFSPT-----LNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVH 993 (1071)
Q Consensus 919 ~l~~h~~~v~~l~~s~d-----~~~l~s~~~d~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~ 993 (1071)
++. ...++.+++++|| .+.+++||.-| +.++.-.=........+.... ++|.++.|. |.++|-++
T Consensus 108 ~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~e------G~I~~i~W~--g~lIAWan 177 (846)
T KOG2066|consen 108 QYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGE------GPIHSIKWR--GNLIAWAN 177 (846)
T ss_pred eEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCc------cceEEEEec--CcEEEEec
Confidence 766 5567999999998 57899999888 777653211111111122222 678899886 77999999
Q ss_pred CCeEEEEeC-CCCceeecCCCCCC---CCCeeEEEEecCCcEEEEEeCCCeEEEEEcC
Q 001477 994 ESQISVYDS-KLECSRSWSPKDAL---PAPISSAIYSCDGLLVYAGFCDGAIGVFDAE 1047 (1071)
Q Consensus 994 d~~i~vwd~-~~~~~~~~~~~~~h---~~~v~~~~~s~dg~~l~t~~~Dg~i~vwd~~ 1047 (1071)
|-.|+|||. ..+.+..+.+.+.- ......+.|.++.++++ |= --+|+|..+.
T Consensus 178 d~Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVI-GW-~d~v~i~~I~ 233 (846)
T KOG2066|consen 178 DDGVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVI-GW-GDSVKICSIK 233 (846)
T ss_pred CCCcEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEE-ec-CCeEEEEEEe
Confidence 999999999 44444333322110 22334678877766544 54 4468888877
No 343
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.08 E-value=0.006 Score=70.28 Aligned_cols=110 Identities=13% Similarity=0.091 Sum_probs=68.6
Q ss_pred cEEEEEecCCeEEEEEcCCCceeEEecCCCC------cE--EEEEEccCCCEEEEeccCCCCCCeEEEEeCCCCceeEEe
Q 001477 512 QFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN------WC--TMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTY 583 (1071)
Q Consensus 512 ~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~------~i--~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~ 583 (1071)
..++.++.++.+...|..+++.......... .+ ..++. .++..++.++. ++.|+.+|.++|+.+..+
T Consensus 62 g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~-~~~~~V~v~~~----~g~v~AlD~~TG~~~W~~ 136 (488)
T cd00216 62 GDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAY-WDPRKVFFGTF----DGRLVALDAETGKQVWKF 136 (488)
T ss_pred CEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEE-ccCCeEEEecC----CCeEEEEECCCCCEeeee
Confidence 5677778888999899888877766544322 00 01111 12245555543 778999999999998877
Q ss_pred eccccc----ce-eEEEEeCCCCEEEEEe---------CCCcEEEEeCCCCceeEEEec
Q 001477 584 SGFRKR----SL-GVVQFDTTRNRFLAAG---------DEFQIKFWDMDNMNMLTTVDA 628 (1071)
Q Consensus 584 ~~~~~~----~v-~~~~~~~~~~~l~~~~---------~dg~i~iwd~~~~~~~~~~~~ 628 (1071)
...... .+ .+..+. +..++.++ .+|.++.+|..+|+.+...+.
T Consensus 137 ~~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~ 193 (488)
T cd00216 137 GNNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYT 193 (488)
T ss_pred cCCCCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeec
Confidence 654320 01 112222 24455543 368899999999998887754
No 344
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.01 E-value=0.00056 Score=75.97 Aligned_cols=176 Identities=15% Similarity=0.220 Sum_probs=104.1
Q ss_pred CCCeEEEEEecCCcEEEEEeCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEccCCeEEEE
Q 001477 840 EESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK 919 (1071)
Q Consensus 840 ~~~v~~v~~s~d~~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~ 919 (1071)
......+.++|+|++++++++|...|+.....+.... +.-..++|++ .++ +|+-...++|.|+.--+.+....
T Consensus 32 ~~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~~-----G~g~~~vw~~-~n~-yAv~~~~~~I~I~kn~~~~~~k~ 104 (443)
T PF04053_consen 32 EIYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKAF-----GSGLSFVWSS-RNR-YAVLESSSTIKIYKNFKNEVVKS 104 (443)
T ss_dssp SS--SEEEE-TTSSEEEEEETTEEEEEETTTTEEEEE-----EE-SEEEE-T-SSE-EEEE-TTS-EEEEETTEE-TT--
T ss_pred CcCCeeEEECCCCCEEEEEcCCEEEEEEccCCccccc-----CceeEEEEec-Ccc-EEEEECCCeEEEEEcCccccceE
Confidence 4557889999999999999999999999665554332 2345688988 555 66666688999974333333233
Q ss_pred ecCcCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeecCCCCCCCCCCCceEEEEccCCCEEEEEECCeEEE
Q 001477 920 LKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISV 999 (1071)
Q Consensus 920 l~~h~~~v~~l~~s~d~~~l~s~~~d~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~v 999 (1071)
+... ..+..|-. |.+|...+.+ .|.+||+++++.+..... .+|..+.|+++|.+++...+..+.+
T Consensus 105 i~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v----------~~vk~V~Ws~~g~~val~t~~~i~i 169 (443)
T PF04053_consen 105 IKLP-FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDV----------SAVKYVIWSDDGELVALVTKDSIYI 169 (443)
T ss_dssp ---S-S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS-----------E-EEEEE-TTSSEEEEE-S-SEEE
T ss_pred EcCC-cccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEec----------CCCcEEEEECCCCEEEEEeCCeEEE
Confidence 3321 23444443 8888877765 799999999886654321 2378999999999999988889999
Q ss_pred EeCCCC------------ceeecCCCCCCCCCeeEEEEecCCcEEEEEeCCCeEEE
Q 001477 1000 YDSKLE------------CSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGV 1043 (1071)
Q Consensus 1000 wd~~~~------------~~~~~~~~~~h~~~v~~~~~s~dg~~l~t~~~Dg~i~v 1043 (1071)
++.+.+ .+...... ...|.+.+|..| -+++|.. . .|+.
T Consensus 170 l~~~~~~~~~~~~~g~e~~f~~~~E~---~~~IkSg~W~~d-~fiYtT~-~-~lkY 219 (443)
T PF04053_consen 170 LKYNLEAVAAIPEEGVEDAFELIHEI---SERIKSGCWVED-CFIYTTS-N-HLKY 219 (443)
T ss_dssp EEE-HHHHHHBTTTB-GGGEEEEEEE----S--SEEEEETT-EEEEE-T-T-EEEE
T ss_pred EEecchhcccccccCchhceEEEEEe---cceeEEEEEEcC-EEEEEcC-C-eEEE
Confidence 998655 33333221 457888888777 4444433 3 5655
No 345
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.01 E-value=0.00032 Score=76.54 Aligned_cols=115 Identities=17% Similarity=0.225 Sum_probs=83.6
Q ss_pred CCCeEEEEEec-CCcEEEEE----e-CCe----EEEEECCCCeEEEE---EeCCCCCeEEEEEcCCCCCEEEEEeCCCeE
Q 001477 840 EESAACIALSK-NDSYVMSA----S-GGK----VSLFNMMTFKVMTM---FMSPPPAATFLAFHPQDNNIIAIGMEDSSV 906 (1071)
Q Consensus 840 ~~~v~~v~~s~-d~~~la~~----~-dg~----i~vwd~~~~~~~~~---~~~~~~~i~~l~~sp~~~~~la~g~~dg~v 906 (1071)
+....++.||. +...+.+. + +|. .++|+....+..+. --.....+.+++++| +...++.|+.||+|
T Consensus 205 E~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp-~E~kLvlGC~DgSi 283 (545)
T PF11768_consen 205 ENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSP-SEDKLVLGCEDGSI 283 (545)
T ss_pred cCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCc-ccceEEEEecCCeE
Confidence 44557778876 33333333 2 343 56788766544322 123567899999999 88999999999999
Q ss_pred EEEEccCCeEEEEecCcCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 001477 907 QIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWE 957 (1071)
Q Consensus 907 ~vwd~~~~~~~~~l~~h~~~v~~l~~s~d~~~l~s~~~d~~v~vWd~~~~~ 957 (1071)
.+||...+.- .+..+.-..+.++|+|+|.++++|+.-|.+.+||+.-..
T Consensus 284 iLyD~~~~~t--~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 284 ILYDTTRGVT--LLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred EEEEcCCCee--eeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence 9999877632 232344567899999999999999999999999987643
No 346
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.00 E-value=0.0011 Score=73.46 Aligned_cols=196 Identities=11% Similarity=0.095 Sum_probs=121.3
Q ss_pred eecccCCEEEEEEecCCCceEEEEEeCC--CcEEEEEccCCceeEEecCCCCCeEEEEecccCCccEEEEEecCCeE--E
Q 001477 449 IDAHVGGVNDIAFAHPNKQLCIVTCGDD--KMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKI--K 524 (1071)
Q Consensus 449 ~~~h~~~v~~~~~s~d~~~~~l~s~~~d--~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i--~ 524 (1071)
+..-...+..-+|+|+++.+..++-... ..+.++|+.+++....+. ..+.-...+|+|++. .++++...||.. .
T Consensus 188 l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~-~l~f~~~rdg~~~iy 265 (425)
T COG0823 188 LTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGS-KLAFSSSRDGSPDIY 265 (425)
T ss_pred ecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCC-EEEEEECCCCCccEE
Confidence 3334456778899999996333333333 359999999887654443 233334457888663 566667777775 4
Q ss_pred EEEcCCCceeEEecCCCCcEEEEEEccCCCEEEEeccCCCCCCeEEEEeCCCCceeEEeecccccceeEEEEeCCCCEEE
Q 001477 525 AWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFL 604 (1071)
Q Consensus 525 vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 604 (1071)
+.|+....... +....+.-..-.|+|||++++..+ ++.+...|.+++...+... .+..... .-..-.|+|||++++
T Consensus 266 ~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~S-dr~G~p~I~~~~~~g~~~~-riT~~~~-~~~~p~~SpdG~~i~ 341 (425)
T COG0823 266 LMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTS-DRGGRPQIYLYDLEGSQVT-RLTFSGG-GNSNPVWSPDGDKIV 341 (425)
T ss_pred EEcCCCCccee-cccCCccccCccCCCCCCEEEEEe-CCCCCcceEEECCCCCcee-EeeccCC-CCcCccCCCCCCEEE
Confidence 55666555333 333333334678999999999876 4555667888888866553 3332222 122677999999998
Q ss_pred EEeC-CCc--EEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCC
Q 001477 605 AAGD-EFQ--IKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSD 653 (1071)
Q Consensus 605 ~~~~-dg~--i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 653 (1071)
..+. +|. |.+.|+.++.....+.... ....-.|.+++..+...+..
T Consensus 342 ~~~~~~g~~~i~~~~~~~~~~~~~lt~~~---~~e~ps~~~ng~~i~~~s~~ 390 (425)
T COG0823 342 FESSSGGQWDIDKNDLASGGKIRILTSTY---LNESPSWAPNGRMIMFSSGQ 390 (425)
T ss_pred EEeccCCceeeEEeccCCCCcEEEccccc---cCCCCCcCCCCceEEEeccC
Confidence 8663 344 6677776666544444322 23455777888877665543
No 347
>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions. The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.
Probab=98.00 E-value=9.3e-06 Score=49.42 Aligned_cols=27 Identities=37% Similarity=0.551 Sum_probs=24.7
Q ss_pred HHHHHHHHHHhhhccHHHHHHHHHHHc
Q 001477 6 RELVFLILQFLDEEKFKETVHKLEQES 32 (1071)
Q Consensus 6 ~e~~rli~q~L~~~g~~~s~~~L~~Es 32 (1071)
+++.+||++||.++||.+||.+|.+||
T Consensus 1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea 27 (27)
T PF08513_consen 1 EELNQLIYDYLVENGYKETAKAFAKEA 27 (27)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence 578999999999999999999999997
No 348
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.97 E-value=0.018 Score=66.57 Aligned_cols=110 Identities=9% Similarity=0.008 Sum_probs=65.0
Q ss_pred cEEEEEecCCeEEEEEcCCCceeEEecCCCC-cEE----------EEEEccCCCEEEEeccCCCCCCeEEEEeCCCCcee
Q 001477 512 QFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN-WCT----------MMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIK 580 (1071)
Q Consensus 512 ~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~-~i~----------~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~ 580 (1071)
..++.++.++.|.-.|..+++....+..... .+. .+++ .+..++.++. ++.+...|..+|+.+
T Consensus 70 g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~----dg~l~ALDa~TGk~~ 143 (527)
T TIGR03075 70 GVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTL----DARLVALDAKTGKVV 143 (527)
T ss_pred CEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcC----CCEEEEEECCCCCEE
Confidence 4677777778888888888877766543211 111 1122 1234555443 778999999999998
Q ss_pred EEeecccccceeEEEEeC--CCCEEEEEe------CCCcEEEEeCCCCceeEEEe
Q 001477 581 RTYSGFRKRSLGVVQFDT--TRNRFLAAG------DEFQIKFWDMDNMNMLTTVD 627 (1071)
Q Consensus 581 ~~~~~~~~~~v~~~~~~~--~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~ 627 (1071)
..........-..+.-+| .+..++.+. .+|.|..+|.++|+.+..+.
T Consensus 144 W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 144 WSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred eecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence 776532110000111111 123455543 26899999999999887764
No 349
>smart00668 CTLH C-terminal to LisH motif. Alpha-helical motif of unknown function.
Probab=97.95 E-value=8.9e-06 Score=62.11 Aligned_cols=53 Identities=32% Similarity=0.536 Sum_probs=43.0
Q ss_pred cHHHHHHHhhcccHHHHHHHhcCcCcccccchhhHHHHHHHHHHHHHHhcccCH
Q 001477 37 NMKHFEDQVQAGEWDEVERYLCGFTKVEDNRYSMKIFFEIRKQKYLEALDRQDR 90 (1071)
Q Consensus 37 ~~~~l~~~i~~g~w~~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~lEll~~~~~ 90 (1071)
++..++++|+.|+|+.|++.+...........+ .+.|.|++|+|+||+..++.
T Consensus 4 ~~~~i~~~i~~g~~~~a~~~~~~~~~~l~~~~~-~l~f~L~~q~~lell~~~~~ 56 (58)
T smart00668 4 ERKRIRELILKGDWDEALEWLSSLKPPLLERNS-KLEFELRKQKFLELVRQGKL 56 (58)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHcCHHHhccCC-CchhHHHHHHHHHHHHcCCc
Confidence 367899999999999999999888554323323 49999999999999988754
No 350
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.91 E-value=0.00072 Score=74.88 Aligned_cols=203 Identities=10% Similarity=0.073 Sum_probs=116.4
Q ss_pred ccCCccceeeEEeecCCCCeEEEEeecCCCeEEEEEcCC---CeEEEEecCCCcccccccceeecccccccchhhhhccc
Q 001477 330 YSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNV---GDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLND 406 (1071)
Q Consensus 330 ~~~d~~~~~~~~~~~h~~~V~~~~fsp~g~~lla~gs~d---g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 406 (1071)
+..|...............+..-+|+|+++.+....-.. ..+.++++.+++..... .
T Consensus 176 ~~~D~dg~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~--------------------~ 235 (425)
T COG0823 176 ALGDYDGYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVIL--------------------N 235 (425)
T ss_pred EEEccCCcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceee--------------------c
Confidence 333433333333333567888899999998755443222 35999999988754321 1
Q ss_pred CCCCeeEEEECCCCCEEEEEe-CCCe--EEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCC--cEEE
Q 001477 407 AAISVNRCVWGPDGLMLGVAF-SKHI--VHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK--MIKV 481 (1071)
Q Consensus 407 h~~~v~~~~~spd~~~la~~~-~dg~--i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~--~i~i 481 (1071)
-.+.-..-+|||||++|+.+. .||. |.++|+.++... .+..-.+.-+.-.|+|||+. ++++.+..| .|.+
T Consensus 236 ~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~----~Lt~~~gi~~~Ps~spdG~~-ivf~Sdr~G~p~I~~ 310 (425)
T COG0823 236 FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLP----RLTNGFGINTSPSWSPDGSK-IVFTSDRGGRPQIYL 310 (425)
T ss_pred cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcce----ecccCCccccCccCCCCCCE-EEEEeCCCCCcceEE
Confidence 233344568999999888764 4554 666677776532 23333333447789999996 344444455 4566
Q ss_pred EEccCCceeEEecCCCCCeEEEEecccCCccEEEEEec-CCe--EEEEEcCCCceeEEecCCCCcEEEEEEccCCCEEEE
Q 001477 482 WDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI-DGK--IKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFS 558 (1071)
Q Consensus 482 wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~-d~~--i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 558 (1071)
.|.+.+.. ..+....+.-..-.|+|++ .+++..+. +|. |.+.|+.++.. ............-.|.++|+.++.
T Consensus 311 ~~~~g~~~-~riT~~~~~~~~p~~SpdG--~~i~~~~~~~g~~~i~~~~~~~~~~-~~~lt~~~~~e~ps~~~ng~~i~~ 386 (425)
T COG0823 311 YDLEGSQV-TRLTFSGGGNSNPVWSPDG--DKIVFESSSGGQWDIDKNDLASGGK-IRILTSTYLNESPSWAPNGRMIMF 386 (425)
T ss_pred ECCCCCce-eEeeccCCCCcCccCCCCC--CEEEEEeccCCceeeEEeccCCCCc-EEEccccccCCCCCcCCCCceEEE
Confidence 66655544 2222222222245566654 66666654 344 55666655553 222222333445568888888886
Q ss_pred ecc
Q 001477 559 CGT 561 (1071)
Q Consensus 559 ~~~ 561 (1071)
.+.
T Consensus 387 ~s~ 389 (425)
T COG0823 387 SSG 389 (425)
T ss_pred ecc
Confidence 653
No 351
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.91 E-value=0.0071 Score=66.39 Aligned_cols=242 Identities=12% Similarity=0.078 Sum_probs=139.0
Q ss_pred CeeEEEECCCCCEEEEEeCCCeEEEEEecCCCccc----------------------------------------eeeEe
Q 001477 410 SVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELR----------------------------------------QHLEI 449 (1071)
Q Consensus 410 ~v~~~~~spd~~~la~~~~dg~i~iwd~~~~~~~~----------------------------------------~~~~~ 449 (1071)
.|+.+.|+++...||+|...|.|.||.+..++... ...-+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 48899999999999999999999998775432111 01122
Q ss_pred ecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccCCceeEEe--cC------CCCCeEEEEec---ccCCc---cEEE
Q 001477 450 DAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF--EG------HEAPVYSVCPH---HKESI---QFIF 515 (1071)
Q Consensus 450 ~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~--~~------h~~~v~~i~~~---~~~~~---~~l~ 515 (1071)
....++|++++.|.-| +++.|..+|.+.|.|++....++.- .. ....|+++.|. ..+|+ -.++
T Consensus 83 ~~~~g~vtal~~S~iG---Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 83 DAKQGPVTALKNSDIG---FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp ---S-SEEEEEE-BTS---EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred eccCCcEeEEecCCCc---EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 3346899999998665 7999999999999999888877652 22 33467788775 23333 5788
Q ss_pred EEecCCeEEEEEcCC-Cce--eE----EecCCCCcEEEEE-EccC---------------------CCEEEEeccCCCCC
Q 001477 516 STAIDGKIKAWLYDY-LGS--RV----DYDAPGNWCTMMA-YSAD---------------------GTRLFSCGTSKEGE 566 (1071)
Q Consensus 516 s~~~d~~i~vwd~~~-~~~--~~----~~~~~~~~i~~~~-~s~~---------------------~~~l~~~~~~~d~~ 566 (1071)
+|...|.+.+|.+.. ... .. ....+...|..+. ++.+ ..++++++ +
T Consensus 160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS-----e 234 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS-----E 234 (395)
T ss_dssp EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE------S
T ss_pred EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc-----c
Confidence 999999999998752 111 11 1123444444444 3221 11444544 5
Q ss_pred CeEEEEeCCCCceeEEeecccccceeEEEEe-----CCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCC--CCCcceEE
Q 001477 567 SHLVEWNESEGAIKRTYSGFRKRSLGVVQFD-----TTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGG--LPASPRLR 639 (1071)
Q Consensus 567 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~-----~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~~~ 639 (1071)
..++++...+.+.........- ....+++- ..+..|++-..+|.|+++.+..-+.+..+..... ...+....
T Consensus 235 ~~irv~~~~~~k~~~K~~~~~~-~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ss 313 (395)
T PF08596_consen 235 SDIRVFKPPKSKGAHKSFDDPF-LCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSS 313 (395)
T ss_dssp SEEEEE-TT---EEEEE-SS-E-EEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-E
T ss_pred cceEEEeCCCCcccceeecccc-ccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccE
Confidence 5599999888776655442211 23334442 3456677888999999999999998888876421 12346678
Q ss_pred EcCCCCEEEEEeCCCcEEEEEc
Q 001477 640 FNKEGSLLAVTTSDNGIKILAN 661 (1071)
Q Consensus 640 ~s~~~~~l~~~~~dg~v~iw~~ 661 (1071)
++++|..++-.+.. .+.++.+
T Consensus 314 is~~Gdi~~~~gps-E~~l~sv 334 (395)
T PF08596_consen 314 ISRNGDIFYWTGPS-EIQLFSV 334 (395)
T ss_dssp E-TTS-EEEE-SSS-EEEEEEE
T ss_pred ECCCCCEEEEeCcc-cEEEEEE
Confidence 88999876665543 5555543
No 352
>smart00667 LisH Lissencephaly type-1-like homology motif. Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.
Probab=97.89 E-value=1.9e-05 Score=52.46 Aligned_cols=32 Identities=38% Similarity=0.527 Sum_probs=29.6
Q ss_pred chHHHHHHHHHHhhhccHHHHHHHHHHHcCCC
Q 001477 4 LSRELVFLILQFLDEEKFKETVHKLEQESGFF 35 (1071)
Q Consensus 4 ~~~e~~rli~q~L~~~g~~~s~~~L~~Esg~~ 35 (1071)
.++++.++|+|||...||.+|+.+|++|+|+.
T Consensus 2 ~~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~ 33 (34)
T smart00667 2 SRSELNRLILEYLLRNGYEETAETLQKESGLS 33 (34)
T ss_pred cHHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence 36789999999999999999999999999975
No 353
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.88 E-value=0.0053 Score=67.38 Aligned_cols=253 Identities=15% Similarity=0.196 Sum_probs=133.8
Q ss_pred CeEEEEeecCCCeEEEEEcCCCeEEEEecCCCcccc------c------------ccceeeccccccc------chhhhh
Q 001477 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLA------H------------KPFKVWDISAASM------PLQNAL 403 (1071)
Q Consensus 348 ~V~~~~fsp~g~~lla~gs~dg~i~iwd~~~~~~~~------~------------~~~~~~d~~~~~~------~~~~~~ 403 (1071)
.|+.+.|+++... |++|...|.|.||.+...+.-. . ..-.+.|+..... ..+..+
T Consensus 3 ~v~~vs~a~~t~E-lav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPETLE-LAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETTTTE-EEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCCCce-EEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 6899999999765 6788999999999886543221 0 0112333332211 123334
Q ss_pred cccCCCCeeEEEECCCCCEEEEEeCCCeEEEEEecCCCccceeeEeec------ccCCEEEEEEec---CCCc---eEEE
Q 001477 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDA------HVGGVNDIAFAH---PNKQ---LCIV 471 (1071)
Q Consensus 404 ~~~h~~~v~~~~~spd~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~------h~~~v~~~~~s~---d~~~---~~l~ 471 (1071)
+....++|++++.| |=-++|.|+.+|.+.|.|+++...+... .+.. ....|+++.|+- .++. ++++
T Consensus 82 ~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~-~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 82 LDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNE-NIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp E---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEE-EGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred eeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeec-cccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 56668999999998 6669999999999999999877655431 2222 234688888862 2222 4788
Q ss_pred EEeCCCcEEEEEcc--C-Ccee----EEecCCCCCeEEEEecccCCc-------------------cEEEEEecCCeEEE
Q 001477 472 TCGDDKMIKVWDVV--A-GRKQ----YTFEGHEAPVYSVCPHHKESI-------------------QFIFSTAIDGKIKA 525 (1071)
Q Consensus 472 s~~~d~~i~iwd~~--~-~~~~----~~~~~h~~~v~~i~~~~~~~~-------------------~~l~s~~~d~~i~v 525 (1071)
.|...|.+.+|.+. . +... .....+.++|..|.......| +-++....+..+++
T Consensus 160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv 239 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRV 239 (395)
T ss_dssp EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEE
T ss_pred EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEE
Confidence 99999999999775 1 2221 122246677776653211110 22455556888999
Q ss_pred EEcCCCceeEEecCCCCcEEEEEEc-----cCCCEEEEeccCCCCCCeEEEEeCCCCceeEEeecccc---cceeEEEEe
Q 001477 526 WLYDYLGSRVDYDAPGNWCTMMAYS-----ADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK---RSLGVVQFD 597 (1071)
Q Consensus 526 wd~~~~~~~~~~~~~~~~i~~~~~s-----~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~---~~v~~~~~~ 597 (1071)
+...+.+...+..........+++- ..+..|++-. .+|.++++.+..-+.+..+..... ..+...+++
T Consensus 240 ~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~----~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis 315 (395)
T PF08596_consen 240 FKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLF----NNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSIS 315 (395)
T ss_dssp E-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEE----TTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-
T ss_pred EeCCCCcccceeeccccccceEEEEeecccCCceEEEEEE----CCCcEEEEECCCchHhhcccCCCccccccccccEEC
Confidence 9887766554444222233344453 2444555554 388899999998887776665321 123445667
Q ss_pred CCCCEEEEEe
Q 001477 598 TTRNRFLAAG 607 (1071)
Q Consensus 598 ~~~~~l~~~~ 607 (1071)
++|..++-.+
T Consensus 316 ~~Gdi~~~~g 325 (395)
T PF08596_consen 316 RNGDIFYWTG 325 (395)
T ss_dssp TTS-EEEE-S
T ss_pred CCCCEEEEeC
Confidence 7776555443
No 354
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.87 E-value=0.0034 Score=69.82 Aligned_cols=222 Identities=10% Similarity=0.056 Sum_probs=119.7
Q ss_pred cCCCCeeEEEECCCCCEEEEEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEcc
Q 001477 406 DAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV 485 (1071)
Q Consensus 406 ~h~~~v~~~~~spd~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~ 485 (1071)
...-....+.++|+|+.++++ .||.-.||..... +. ...+.-...+|.+.++ +|+-...++|.++.--
T Consensus 30 ~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~---r~-----k~~G~g~~~vw~~~n~---yAv~~~~~~I~I~kn~ 97 (443)
T PF04053_consen 30 SCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAW---RN-----KAFGSGLSFVWSSRNR---YAVLESSSTIKIYKNF 97 (443)
T ss_dssp E-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTT---EE-----EEEEE-SEEEE-TSSE---EEEE-TTS-EEEEETT
T ss_pred CCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCC---cc-----cccCceeEEEEecCcc---EEEEECCCeEEEEEcC
Confidence 344557899999999999995 6777778873322 21 1223456788988554 6777778899997433
Q ss_pred CCceeEEecCCCCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCceeEEecCCCCcEEEEEEccCCCEEEEeccCCCC
Q 001477 486 AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEG 565 (1071)
Q Consensus 486 ~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~ 565 (1071)
+.+....+.. ...+..+-. |.+|...+. +.|.+||+.+.+.+..+... .|..+.|+++|++++..+
T Consensus 98 ~~~~~k~i~~-~~~~~~If~-----G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t----- 163 (443)
T PF04053_consen 98 KNEVVKSIKL-PFSVEKIFG-----GNLLGVKSS-DFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVT----- 163 (443)
T ss_dssp EE-TT------SS-EEEEE------SSSEEEEET-TEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE------
T ss_pred ccccceEEcC-CcccceEEc-----CcEEEEECC-CCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEe-----
Confidence 3333233321 223444432 355655554 48999999999888887754 489999999999999886
Q ss_pred CCeEEEEeCCCC-----------ceeEEeecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCCce--eEEEecCCCC
Q 001477 566 ESHLVEWNESEG-----------AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM--LTTVDADGGL 632 (1071)
Q Consensus 566 ~~~i~iwd~~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~ 632 (1071)
+..+.+++.... .....+.... ..|.+.+|..+ -++++. .. .|+- +-.|+. +..+.
T Consensus 164 ~~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~-~~IkSg~W~~d-~fiYtT-~~-~lkY--l~~Ge~~~i~~ld----- 232 (443)
T PF04053_consen 164 KDSIYILKYNLEAVAAIPEEGVEDAFELIHEIS-ERIKSGCWVED-CFIYTT-SN-HLKY--LVNGETGIIAHLD----- 232 (443)
T ss_dssp S-SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE--S--SEEEEETT-EEEEE--TT-EEEE--EETTEEEEEEE-S-----
T ss_pred CCeEEEEEecchhcccccccCchhceEEEEEec-ceeEEEEEEcC-EEEEEc-CC-eEEE--EEcCCcceEEEcC-----
Confidence 334777765432 0222222212 26888889876 333333 33 5655 333332 23332
Q ss_pred CCcceEEEcCCCCEEEEEeCCCcEEEEEcCCh
Q 001477 633 PASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1071)
Q Consensus 633 ~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~ 664 (1071)
.++.-+.+.++.+.++....|+.+..+.+...
T Consensus 233 ~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~~ 264 (443)
T PF04053_consen 233 KPLYLLGYLPKENRLYLIDRDGNVISYELDLS 264 (443)
T ss_dssp S--EEEEEETTTTEEEEE-TT--EEEEE--HH
T ss_pred CceEEEEEEccCCEEEEEECCCCEEEEEECHH
Confidence 25677788887789999999999999988765
No 355
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.86 E-value=0.0056 Score=62.10 Aligned_cols=202 Identities=12% Similarity=0.102 Sum_probs=112.9
Q ss_pred CCCeEEEEEecCCcEEE-EEe-CCeEEEEECCCCeEEEEEeCC-CCCeEEEEEcCCCCCEEEEEeCCCeEEEEEccCCe-
Q 001477 840 EESAACIALSKNDSYVM-SAS-GGKVSLFNMMTFKVMTMFMSP-PPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE- 915 (1071)
Q Consensus 840 ~~~v~~v~~s~d~~~la-~~~-dg~i~vwd~~~~~~~~~~~~~-~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~- 915 (1071)
...++.++|.|+...|+ +.+ .+.|..++. +|+.++++.-. .+..-.+++.. ++.++++--.++.+.++++....
T Consensus 21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g-~~~~vl~~Er~~~L~~~~~~~~~~ 98 (248)
T PF06977_consen 21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLG-NGRYVLSEERDQRLYIFTIDDDTT 98 (248)
T ss_dssp -S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-S-TTEEEEEETTTTEEEEEEE----T
T ss_pred cCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEEC-CCEEEEEEcCCCcEEEEEEecccc
Confidence 45699999999866554 444 688888887 47888776543 35678899987 77777766568999999984321
Q ss_pred -----EEEEec-----CcCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCC---CceeeeeeecCCCCCCCCCCCceEEEE
Q 001477 916 -----VKTKLK-----GHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK---WEKLKSRFIQAPAGRQSPLVGETKVQF 982 (1071)
Q Consensus 916 -----~~~~l~-----~h~~~v~~l~~s~d~~~l~s~~~d~~v~vWd~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~ 982 (1071)
....+. .+...+-.|+|.+.++.|+.+-...-..++.+.. ...+.................+.++++
T Consensus 99 ~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~ 178 (248)
T PF06977_consen 99 SLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSY 178 (248)
T ss_dssp T--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEE
T ss_pred ccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEE
Confidence 112221 3455689999999988888887776677777654 222211111111111112256789999
Q ss_pred ccCCCEEEE-EE-CCeEEEEeCCCCceeecCCCCCC------CCCeeEEEEecCCcEEEEEeCCCeEEEE
Q 001477 983 HNDQTHLLV-VH-ESQISVYDSKLECSRSWSPKDAL------PAPISSAIYSCDGLLVYAGFCDGAIGVF 1044 (1071)
Q Consensus 983 s~dg~~l~~-~~-d~~i~vwd~~~~~~~~~~~~~~h------~~~v~~~~~s~dg~~l~t~~~Dg~i~vw 1044 (1071)
.|....|.+ ++ ...|..+|.+++.+..+.-..+. -.....|+|.++|++.+ .++-+..++|
T Consensus 179 ~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYI-vsEpNlfy~f 247 (248)
T PF06977_consen 179 DPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYI-VSEPNLFYRF 247 (248)
T ss_dssp ETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEE-EETTTEEEEE
T ss_pred cCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEE-EcCCceEEEe
Confidence 997655554 53 56888888877765544322211 23578999999997655 4566655554
No 356
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.85 E-value=0.007 Score=64.23 Aligned_cols=228 Identities=11% Similarity=0.079 Sum_probs=112.1
Q ss_pred EEEECCCCCEEEEEeC-C--CeEEEEEecCCCccceeeEeecccC-CEEEEEEecCCCceEEEEEeCCCcEEEEEccCCc
Q 001477 413 RCVWGPDGLMLGVAFS-K--HIVHLYTYNPTGELRQHLEIDAHVG-GVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR 488 (1071)
Q Consensus 413 ~~~~spd~~~la~~~~-d--g~i~iwd~~~~~~~~~~~~~~~h~~-~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~ 488 (1071)
.=+|.+||+.|+.++. | ..+.+.|+.+++..+ |....+ ......++++++ .++-......|+-.|+++.+
T Consensus 40 ~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~Q----LTdg~g~~~~g~~~s~~~~--~~~Yv~~~~~l~~vdL~T~e 113 (386)
T PF14583_consen 40 QNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQ----LTDGPGDNTFGGFLSPDDR--ALYYVKNGRSLRRVDLDTLE 113 (386)
T ss_dssp S--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE-------SS-B-TTT-EE-TTSS--EEEEEETTTEEEEEETTT--
T ss_pred CCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEE----CccCCCCCccceEEecCCC--eEEEEECCCeEEEEECCcCc
Confidence 3468899987776655 4 457777888865443 333321 222466778887 45555556788999999987
Q ss_pred eeEEecCCCCCeEEEEecccCCccEEEEEe----------------------cCCeEEEEEcCCCceeEEecCCCCcEEE
Q 001477 489 KQYTFEGHEAPVYSVCPHHKESIQFIFSTA----------------------IDGKIKAWLYDYLGSRVDYDAPGNWCTM 546 (1071)
Q Consensus 489 ~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~----------------------~d~~i~vwd~~~~~~~~~~~~~~~~i~~ 546 (1071)
....+......+-...|..+.++..++-.- ....|.--|+.+++....+. ...++.-
T Consensus 114 ~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH 192 (386)
T PF14583_consen 114 ERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGH 192 (386)
T ss_dssp EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEE
T ss_pred EEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccC
Confidence 766665566666666666555555544321 11234455666655544443 4567888
Q ss_pred EEEccCCCEEE-EeccCCCCCC---eEEEEeCCCCceeEEeecc-cccceeEEEEeCCCCEEEEEe-----CCCcEEEEe
Q 001477 547 MAYSADGTRLF-SCGTSKEGES---HLVEWNESEGAIKRTYSGF-RKRSLGVVQFDTTRNRFLAAG-----DEFQIKFWD 616 (1071)
Q Consensus 547 ~~~s~~~~~l~-~~~~~~d~~~---~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-----~dg~i~iwd 616 (1071)
+.|+|....++ .|-. +..+. .|.+.+.. |...+.+..+ ....+..=-|.|||..+.--+ .+..|.-+|
T Consensus 193 ~~fsP~dp~li~fCHE-Gpw~~Vd~RiW~i~~d-g~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d 270 (386)
T PF14583_consen 193 VQFSPTDPTLIMFCHE-GPWDLVDQRIWTINTD-GSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYD 270 (386)
T ss_dssp EEEETTEEEEEEEEE--S-TTTSS-SEEEEETT-S---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-
T ss_pred cccCCCCCCEEEEecc-CCcceeceEEEEEEcC-CCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeC
Confidence 99999665554 4443 22222 34444433 3333333322 222455566899998766522 355677888
Q ss_pred CCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCC
Q 001477 617 MDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSD 653 (1071)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 653 (1071)
+.+++........ .......++||.+++-=+.|
T Consensus 271 ~~t~~~~~~~~~p----~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 271 PDTGERRRLMEMP----WCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp TTT--EEEEEEE-----SEEEEEE-TTSSEEEEEE--
T ss_pred CCCCCceEEEeCC----ceeeeEEcCCCCEEEecCCC
Confidence 9887665433322 34566677899877654443
No 357
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.84 E-value=0.012 Score=59.60 Aligned_cols=191 Identities=10% Similarity=0.112 Sum_probs=111.7
Q ss_pred CCCeEEEEeecCCCeEEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeEEEECCCCCEEEE
Q 001477 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1071)
Q Consensus 346 ~~~V~~~~fsp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~la~ 425 (1071)
...++.++|.|++++|+++....+.|...+.. |+.+.+.. +.+ .+..-.|++..++.++++
T Consensus 21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~-----------------l~g-~~D~EgI~y~g~~~~vl~ 81 (248)
T PF06977_consen 21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIP-----------------LDG-FGDYEGITYLGNGRYVLS 81 (248)
T ss_dssp -S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE------------------SS--SSEEEEEE-STTEEEEE
T ss_pred cCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEe-----------------CCC-CCCceeEEEECCCEEEEE
Confidence 34699999999988899999999999888864 66554311 233 345778899888888777
Q ss_pred EeCCCeEEEEEecCCCcccee---eEee-----cccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccC---CceeEE--
Q 001477 426 AFSKHIVHLYTYNPTGELRQH---LEID-----AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA---GRKQYT-- 492 (1071)
Q Consensus 426 ~~~dg~i~iwd~~~~~~~~~~---~~~~-----~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~---~~~~~~-- 492 (1071)
.-.++.+.+.++......... ..+. .+...+-.++|.+.++. |+.+-......++.+.. +..+..
T Consensus 82 ~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~--L~v~kE~~P~~l~~~~~~~~~~~~~~~~ 159 (248)
T PF06977_consen 82 EERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNR--LFVAKERKPKRLYEVNGFPGGFDLFVSD 159 (248)
T ss_dssp ETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTE--EEEEEESSSEEEEEEESTT-SS--EEEE
T ss_pred EcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCE--EEEEeCCCChhhEEEccccCccceeecc
Confidence 767899999998543221111 1111 24457899999999884 44555566666666553 222111
Q ss_pred ------ecCCCCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCceeEEecCCC---------CcEEEEEEccCCCEEE
Q 001477 493 ------FEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPG---------NWCTMMAYSADGTRLF 557 (1071)
Q Consensus 493 ------~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~---------~~i~~~~~s~~~~~l~ 557 (1071)
.......+.+++++|. .+++++....+..|..+| ..++....+.... ...-.++|.++|+..+
T Consensus 160 ~~~~~~~~~~~~d~S~l~~~p~-t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYI 237 (248)
T PF06977_consen 160 DQDLDDDKLFVRDLSGLSYDPR-TGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYI 237 (248)
T ss_dssp -HHHH-HT--SS---EEEEETT-TTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEE
T ss_pred ccccccccceeccccceEEcCC-CCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEE
Confidence 1124456788999986 457888888899999998 4455444333322 2577999999997776
Q ss_pred Ee
Q 001477 558 SC 559 (1071)
Q Consensus 558 ~~ 559 (1071)
+.
T Consensus 238 vs 239 (248)
T PF06977_consen 238 VS 239 (248)
T ss_dssp EE
T ss_pred Ec
Confidence 65
No 358
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.81 E-value=0.011 Score=65.65 Aligned_cols=207 Identities=15% Similarity=0.169 Sum_probs=144.1
Q ss_pred eEEEEEecCCcEEEEEe--CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCCEEEEEeC---CCeEEEEEccCCeEE
Q 001477 843 AACIALSKNDSYVMSAS--GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGME---DSSVQIYNVRVDEVK 917 (1071)
Q Consensus 843 v~~v~~s~d~~~la~~~--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~---dg~v~vwd~~~~~~~ 917 (1071)
-..+++++++..+.+.. ++.|.+.|..+.+......--. ....++++| +++.+.++.. ++++.+.|..+++.+
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~-~~~~vYV~n~~~~~~~vsvid~~t~~~~ 153 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDP-DGKYVYVANAGNGNNTVSVIDAATNKVT 153 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECC-CCCEEEEEecccCCceEEEEeCCCCeEE
Confidence 45688899998666655 6899999988877776654322 567899999 6655555544 689999999999888
Q ss_pred EEecCcCCCeeEEEEcCCCCEEEEEe-CCCcEEEEECCCCceeeeeeecCCCCCCCCCCCceEEEEccCCCEEEEEE--C
Q 001477 918 TKLKGHQNRITGLAFSPTLNALVSSG-ADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVH--E 994 (1071)
Q Consensus 918 ~~l~~h~~~v~~l~~s~d~~~l~s~~-~d~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~--d 994 (1071)
.....-..+ ..++++|+|..++.+. .++.|.+.|........ .. .............++++|+|.++.+.. +
T Consensus 154 ~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~---~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~ 228 (381)
T COG3391 154 ATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GS---VGSLVGVGTGPAGIAVDPDGNRVYVANDGS 228 (381)
T ss_pred EEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cc---cccccccCCCCceEEECCCCCEEEEEeccC
Confidence 875544344 8899999999666554 78899999977754331 00 000111114457899999999877753 2
Q ss_pred --CeEEEEeCCCCceeec-CCCCCCCCCeeEEEEecCCcEEEEEeCC-CeEEEEEcCCCeEEEEeCCC
Q 001477 995 --SQISVYDSKLECSRSW-SPKDALPAPISSAIYSCDGLLVYAGFCD-GAIGVFDAETLRFRCRIGPS 1058 (1071)
Q Consensus 995 --~~i~vwd~~~~~~~~~-~~~~~h~~~v~~~~~s~dg~~l~t~~~D-g~i~vwd~~~~~~~~~~~~~ 1058 (1071)
+.+...|......... ..... . ....+.++|+|+++.+.... +.+.+-|..+......+...
T Consensus 229 ~~~~v~~id~~~~~v~~~~~~~~~-~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~ 294 (381)
T COG3391 229 GSNNVLKIDTATGNVTATDLPVGS-G-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTG 294 (381)
T ss_pred CCceEEEEeCCCceEEEecccccc-C-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeeccc
Confidence 5788888844433332 22211 2 56678999999998877544 78999999988888765544
No 359
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.81 E-value=0.019 Score=65.19 Aligned_cols=250 Identities=12% Similarity=0.085 Sum_probs=135.3
Q ss_pred CeEEEEeecCCCeEEEEEcCCC----eEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeEEEECCCCCEE
Q 001477 348 NVMSMDFHPQQQTILLVGTNVG----DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLML 423 (1071)
Q Consensus 348 ~V~~~~fsp~g~~lla~gs~dg----~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~l 423 (1071)
.+....+||||++++++-+..| .+++.|+.+|+.+.. . +. ...-..+.|++|++.+
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d-~-----------------i~--~~~~~~~~W~~d~~~~ 184 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD-G-----------------IE--NPKFSSVSWSDDGKGF 184 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE-E-----------------EE--EEESEEEEECTTSSEE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC-c-----------------cc--ccccceEEEeCCCCEE
Confidence 3446789999996655544444 699999999875532 1 11 1112239999999987
Q ss_pred EEEeCCC-----------eEEEEEecCCCccceeeEeecccCC--EEEEEEecCCCceEEEEEeCC---CcEEEEEccCC
Q 001477 424 GVAFSKH-----------IVHLYTYNPTGELRQHLEIDAHVGG--VNDIAFAHPNKQLCIVTCGDD---KMIKVWDVVAG 487 (1071)
Q Consensus 424 a~~~~dg-----------~i~iwd~~~~~~~~~~~~~~~h~~~--v~~~~~s~d~~~~~l~s~~~d---~~i~iwd~~~~ 487 (1071)
+....+. .|..|.+.++..-. ...+...... ...+..++|++. +++..... ..+.+.|+..+
T Consensus 185 ~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d-~lvfe~~~~~~~~~~~~~s~d~~~-l~i~~~~~~~~s~v~~~d~~~~ 262 (414)
T PF02897_consen 185 FYTRFDEDQRTSDSGYPRQVYRHKLGTPQSED-ELVFEEPDEPFWFVSVSRSKDGRY-LFISSSSGTSESEVYLLDLDDG 262 (414)
T ss_dssp EEEECSTTTSS-CCGCCEEEEEEETTS-GGG--EEEEC-TTCTTSEEEEEE-TTSSE-EEEEEESSSSEEEEEEEECCCT
T ss_pred EEEEeCcccccccCCCCcEEEEEECCCChHhC-eeEEeecCCCcEEEEEEecCcccE-EEEEEEccccCCeEEEEecccc
Confidence 7665432 36677776653321 1234443333 568889999996 33333333 35788888764
Q ss_pred ----ceeEEecCCCCCeE-EEEecccCCccEEEEEe---cCCeEEEEEcCCCce---eEEecCCCCcEEEEEEccCCCEE
Q 001477 488 ----RKQYTFEGHEAPVY-SVCPHHKESIQFIFSTA---IDGKIKAWLYDYLGS---RVDYDAPGNWCTMMAYSADGTRL 556 (1071)
Q Consensus 488 ----~~~~~~~~h~~~v~-~i~~~~~~~~~~l~s~~---~d~~i~vwd~~~~~~---~~~~~~~~~~i~~~~~s~~~~~l 556 (1071)
.....+......+. .+... ++ .+++... .++.|...++..... ...+..+...+.-..+...+.+|
T Consensus 263 ~~~~~~~~~l~~~~~~~~~~v~~~--~~-~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~L 339 (414)
T PF02897_consen 263 GSPDAKPKLLSPREDGVEYYVDHH--GD-RLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYL 339 (414)
T ss_dssp TTSS-SEEEEEESSSS-EEEEEEE--TT-EEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEE
T ss_pred CCCcCCcEEEeCCCCceEEEEEcc--CC-EEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEE
Confidence 22333333333333 33332 22 3333332 345677777776653 22333344433333334455666
Q ss_pred EEeccCCCCCCeEEEEeCCCCceeEEeecccccceeEEEEeCCCCEEEE--Ee--CCCcEEEEeCCCCcee
Q 001477 557 FSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLA--AG--DEFQIKFWDMDNMNML 623 (1071)
Q Consensus 557 ~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~--~dg~i~iwd~~~~~~~ 623 (1071)
+.... .++...|.++++..+.....+.....+.|..+...++++.+.. .| .-++++.||+.+++..
T Consensus 340 vl~~~-~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 340 VLSYR-ENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp EEEEE-ETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred EEEEE-ECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence 65443 3456779999998455555555444435666665566655443 22 3467888888887654
No 360
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.73 E-value=1.5e-05 Score=86.24 Aligned_cols=203 Identities=15% Similarity=0.205 Sum_probs=131.2
Q ss_pred CCeEEEEeecCCC-eEEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeEEEECC-CCCEEE
Q 001477 347 SNVMSMDFHPQQQ-TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP-DGLMLG 424 (1071)
Q Consensus 347 ~~V~~~~fsp~g~-~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~sp-d~~~la 424 (1071)
..+.|++++-+.+ -++++|..+|.|.+-.+....-- .|+ ...+|....++++|++ |...||
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS------s~E-----------~tp~~ar~Ct~lAwneLDtn~LA 119 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS------SAE-----------VTPGYARPCTSLAWNELDTNHLA 119 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccc------cce-----------ecccccccccccccccccHHHHH
Confidence 3567777765443 58999999999999887643211 111 1456888999999999 777888
Q ss_pred EEe----CCCeEEEEEecCCCc-cceeeEeec-ccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccCCc-eeEEecCCC
Q 001477 425 VAF----SKHIVHLYTYNPTGE-LRQHLEIDA-HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR-KQYTFEGHE 497 (1071)
Q Consensus 425 ~~~----~dg~i~iwd~~~~~~-~~~~~~~~~-h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~h~ 497 (1071)
.|- .|..+.|||+.++-. .+....+.+ ......+++|..+.+ ++.+|...+.++++|++... ....+ .+
T Consensus 120 agldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~k--lvlaGm~sr~~~ifdlRqs~~~~~sv--nT 195 (783)
T KOG1008|consen 120 AGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTK--LVLAGMTSRSVHIFDLRQSLDSVSSV--NT 195 (783)
T ss_pred hhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcc--hhhcccccchhhhhhhhhhhhhhhhh--hh
Confidence 873 366799999988621 111112222 344566889988877 88899999999999987322 11122 23
Q ss_pred CCeEEEEecccCCccEEEEEecCCeEEEEE-cCCCceeEEecCC-----CCcEEEEEEccCCCE-EEEeccCCCCCCeEE
Q 001477 498 APVYSVCPHHKESIQFIFSTAIDGKIKAWL-YDYLGSRVDYDAP-----GNWCTMMAYSADGTR-LFSCGTSKEGESHLV 570 (1071)
Q Consensus 498 ~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd-~~~~~~~~~~~~~-----~~~i~~~~~s~~~~~-l~~~~~~~d~~~~i~ 570 (1071)
..+..+.+.|-. ++++++-. ||.|-+|| ..+.+..+....+ ...+..++|.|...- +++... ..++|+
T Consensus 196 k~vqG~tVdp~~-~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~R---dS~tIr 270 (783)
T KOG1008|consen 196 KYVQGITVDPFS-PNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSR---DSITIR 270 (783)
T ss_pred hhcccceecCCC-CCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhcc---CcceEE
Confidence 345556666632 25666655 99999999 4444433322222 225889999996544 334443 367899
Q ss_pred EEeCC
Q 001477 571 EWNES 575 (1071)
Q Consensus 571 iwd~~ 575 (1071)
++|+.
T Consensus 271 lydi~ 275 (783)
T KOG1008|consen 271 LYDIC 275 (783)
T ss_pred Eeccc
Confidence 99875
No 361
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.72 E-value=0.01 Score=66.25 Aligned_cols=208 Identities=12% Similarity=0.133 Sum_probs=116.6
Q ss_pred EEEecCCcEEEEEeCC------------eEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEccC
Q 001477 846 IALSKNDSYVMSASGG------------KVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV 913 (1071)
Q Consensus 846 v~~s~d~~~la~~~dg------------~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~ 913 (1071)
++.+|.|..+|...|. .|.||+.. |+.+..+.-..+.|.++.|+. +. .|++...||.+++||+..
T Consensus 34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s-G~ll~~i~w~~~~iv~~~wt~-~e-~LvvV~~dG~v~vy~~~G 110 (410)
T PF04841_consen 34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS-GKLLSSIPWDSGRIVGMGWTD-DE-ELVVVQSDGTVRVYDLFG 110 (410)
T ss_pred EEEcCCCceEEEEecCcccccccCCCCcEEEEECCC-CCEeEEEEECCCCEEEEEECC-CC-eEEEEEcCCEEEEEeCCC
Confidence 4556666666665533 59999975 566666554448999999997 54 455677999999999864
Q ss_pred Ce------EEEEecCcCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcee-eeeeecCCCCCCC---CCCCceE-EEE
Q 001477 914 DE------VKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKL-KSRFIQAPAGRQS---PLVGETK-VQF 982 (1071)
Q Consensus 914 ~~------~~~~l~~h~~~v~~l~~s~d~~~l~s~~~d~~v~vWd~~~~~~~-~~~~~~~~~~~~~---~~~~v~~-~~~ 982 (1071)
.. .+....-....+....+..+|-.+.+ .++.+ |-+.+.+.. .........+... ....... ..+
T Consensus 111 ~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt--~~~~~--~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l 186 (410)
T PF04841_consen 111 EFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVLT--GNNRF--YVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLL 186 (410)
T ss_pred ceeechhhhccccCcccccccccccCCCCEEEEC--CCCeE--EEEeCccccchhhccccCCCcccccccccccccceEe
Confidence 33 11111112222333344445533333 33333 322222211 0000100000000 0001111 345
Q ss_pred ccCCCEEEE-EECCeEEEEeC-CCCceeecCCCCCCCCCeeEEEEecCCcEEEEEeCCCeEEEEEcCCCeEEEEeCCCcc
Q 001477 983 HNDQTHLLV-VHESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAY 1060 (1071)
Q Consensus 983 s~dg~~l~~-~~d~~i~vwd~-~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~ 1060 (1071)
+.+....+. ..++.+.+.+- ..+. + .. .+++..|++||+|++||.-..+|.+.+....-.+.++++.....
T Consensus 187 ~~~~~~~i~~~~g~~i~~i~~~~~~~---i-~~---~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~ 259 (410)
T PF04841_consen 187 SSDRVVEILLANGETIYIIDENSFKQ---I-DS---DGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSK 259 (410)
T ss_pred ecCcceEEEEecCCEEEEEEcccccc---c-cC---CCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcC
Confidence 555554444 44556664443 2111 1 11 46899999999999999999999999999888888888877755
Q ss_pred cCcccee
Q 001477 1061 IPTYAVR 1067 (1071)
Q Consensus 1061 ~~~~~~~ 1067 (1071)
.++..|.
T Consensus 260 ~~p~~~~ 266 (410)
T PF04841_consen 260 SPPKQMA 266 (410)
T ss_pred CCCcEEE
Confidence 5555553
No 362
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.70 E-value=0.016 Score=61.50 Aligned_cols=207 Identities=14% Similarity=0.104 Sum_probs=122.8
Q ss_pred CCCeEEEEEecCCcEEEEEeCCeEEEEECCCCeEEEEE--------------eCCCCCeEEEE--EcCCCCCEEEEEeCC
Q 001477 840 EESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMF--------------MSPPPAATFLA--FHPQDNNIIAIGMED 903 (1071)
Q Consensus 840 ~~~v~~v~~s~d~~~la~~~dg~i~vwd~~~~~~~~~~--------------~~~~~~i~~l~--~sp~~~~~la~g~~d 903 (1071)
...|..+...++-..+++-+|+.+.++++......... ......+...+ -.+.+...|+++ ..
T Consensus 35 ~~~I~ql~vl~~~~~llvLsd~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va-~k 113 (275)
T PF00780_consen 35 LSSITQLSVLPELNLLLVLSDGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVA-VK 113 (275)
T ss_pred cceEEEEEEecccCEEEEEcCCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEE-EC
Confidence 44599999999988888888999999998865443311 11222344444 112144455554 45
Q ss_pred CeEEEEEccCC-----eEEEEecCcCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeecCCC----CCCCCC
Q 001477 904 SSVQIYNVRVD-----EVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPA----GRQSPL 974 (1071)
Q Consensus 904 g~v~vwd~~~~-----~~~~~l~~h~~~v~~l~~s~d~~~l~s~~~d~~v~vWd~~~~~~~~~~~~~~~~----~~~~~~ 974 (1071)
++|.+|.+... +..+++. -.+.+.+++|. ++.++.+..++ ..+.|+.++............ ......
T Consensus 114 k~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~~~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~ 189 (275)
T PF00780_consen 114 KKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGTSKG-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSS 189 (275)
T ss_pred CEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEeCCc-eEEEecCCCCceEEeCccCCcchhhhcccCC
Confidence 58999988753 3555555 34678999998 55677666554 889999976643221111111 000000
Q ss_pred CCceEEEEccCCCEEEEEECCeEEEEeCCCCcee-ecCCCCCCCCCeeEEEEecCCcEEEEEeCCCeEEEEEcCCCeEEE
Q 001477 975 VGETKVQFHNDQTHLLVVHESQISVYDSKLECSR-SWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRC 1053 (1071)
Q Consensus 975 ~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~-~~~~~~~h~~~v~~~~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~ 1053 (1071)
.++ .+.--+++.+|++ .+..-...|..+...+ ..... ...+.++++. ..||++.+. +.|.||++.+++++.
T Consensus 190 ~~~-~~~~~~~~e~Ll~-~~~~g~fv~~~G~~~r~~~i~W---~~~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ 261 (275)
T PF00780_consen 190 KPL-GIFQLSDNEFLLC-YDNIGVFVNKNGEPSRKSTIQW---SSAPQSVAYS--SPYLIAFSS-NSIEVRSLETGELVQ 261 (275)
T ss_pred Cce-EEEEeCCceEEEE-ecceEEEEcCCCCcCcccEEEc---CCchhEEEEE--CCEEEEECC-CEEEEEECcCCcEEE
Confidence 222 2333344566655 3444444455554443 22222 3456677774 448886664 569999999999999
Q ss_pred EeCCCc
Q 001477 1054 RIGPSA 1059 (1071)
Q Consensus 1054 ~~~~~~ 1059 (1071)
.+..+.
T Consensus 262 ~i~~~~ 267 (275)
T PF00780_consen 262 TIPLPN 267 (275)
T ss_pred EEECCC
Confidence 887653
No 363
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.63 E-value=0.11 Score=60.01 Aligned_cols=97 Identities=8% Similarity=-0.021 Sum_probs=59.5
Q ss_pred CCeEEEEeCCCCceeEEeeccccccee----------EEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCc
Q 001477 566 ESHLVEWNESEGAIKRTYSGFRKRSLG----------VVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPAS 635 (1071)
Q Consensus 566 ~~~i~iwd~~~~~~~~~~~~~~~~~v~----------~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 635 (1071)
++.|+-.|..+|+.+.++.......+. .+++ .+..++.++.|+.|.-.|.++|+.+......... .-
T Consensus 78 ~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~-~~ 154 (527)
T TIGR03075 78 YSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSKKNGDYK-AG 154 (527)
T ss_pred CCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeeccccccc-cc
Confidence 556888898899888776542211111 1122 2356778888999999999999998776532111 00
Q ss_pred ceEEEcC--CCCEEEEEeC------CCcEEEEEcCChh
Q 001477 636 PRLRFNK--EGSLLAVTTS------DNGIKILANSDGV 665 (1071)
Q Consensus 636 ~~~~~s~--~~~~l~~~~~------dg~v~iw~~~~~~ 665 (1071)
..+.-+| .+..++++.. +|.|..+|..+++
T Consensus 155 ~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~ 192 (527)
T TIGR03075 155 YTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGK 192 (527)
T ss_pred ccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCc
Confidence 1111122 1335555543 6899999999994
No 364
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.62 E-value=0.0031 Score=73.10 Aligned_cols=188 Identities=11% Similarity=0.056 Sum_probs=108.5
Q ss_pred CCeEEEEEecCCcEEEEEe-------CC--eEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCCEEEEEeCC--------
Q 001477 841 ESAACIALSKNDSYVMSAS-------GG--KVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMED-------- 903 (1071)
Q Consensus 841 ~~v~~v~~s~d~~~la~~~-------dg--~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~d-------- 903 (1071)
..+.+.++||||+.+|... |+ .|.+++.. +.. ..+.. ....+.-.|+| +|+.|++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~-g~~~t~PsWsp-DG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLE-GHSLTRPSWSL-DADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeec-CCCCCCceECC-CCCceEEEecCcceEEEec
Confidence 4678899999999887664 32 46666653 222 33321 22478899999 77777666432
Q ss_pred ----CeEEEEEccCCeEEEEecCcCCCeeEEEEcCCCCEEEEEeCCCcEEE---EECCCCceeeeeeecCCCCCCCCCCC
Q 001477 904 ----SSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCM---WSIDKWEKLKSRFIQAPAGRQSPLVG 976 (1071)
Q Consensus 904 ----g~v~vwd~~~~~~~~~l~~h~~~v~~l~~s~d~~~l~s~~~d~~v~v---Wd~~~~~~~~~~~~~~~~~~~~~~~~ 976 (1071)
+.+.+.++..++... ...+.|..+.|||||.+++... ++.|.+ -....|+..-........+. ...
T Consensus 426 ~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l---~~~ 498 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGL---GDT 498 (591)
T ss_pred cCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeeccc---CCc
Confidence 233333444444322 2356799999999999988766 467776 44444441100001111111 023
Q ss_pred ceEEEEccCCCEEEEEECCeEEEEeC--CCCceeecCCCCCCCCCeeEEEEecCCcEEEEEeCCCeEE
Q 001477 977 ETKVQFHNDQTHLLVVHESQISVYDS--KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIG 1042 (1071)
Q Consensus 977 v~~~~~s~dg~~l~~~~d~~i~vwd~--~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~t~~~Dg~i~ 1042 (1071)
+.++.|.+++.+++...++...+|.+ .+.....+ .......++.+++-+++ .|+.+..+|.+.
T Consensus 499 ~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~~~~~-~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~ 563 (591)
T PRK13616 499 AVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSNSDAL-PSRNLSAPVVAVAASPS--TVYVTDARAVLQ 563 (591)
T ss_pred cccceEecCCEEEEEecCCCCceEEEecCCcccccc-CCCCccCceEEEecCCc--eEEEEcCCceEE
Confidence 57899999999765544444445555 54443322 22223567778877763 455566666433
No 365
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.50 E-value=8.6e-05 Score=80.62 Aligned_cols=159 Identities=14% Similarity=0.131 Sum_probs=107.8
Q ss_pred CCeEEEEecccCCccEEEEEecCCeEEEEEcCCCcee--EEecCCCCcEEEEEEcc-CCCEEEEeccCCCCCCeEEEEeC
Q 001477 498 APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR--VDYDAPGNWCTMMAYSA-DGTRLFSCGTSKEGESHLVEWNE 574 (1071)
Q Consensus 498 ~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~--~~~~~~~~~i~~~~~s~-~~~~l~~~~~~~d~~~~i~iwd~ 574 (1071)
..+.|+++..+.+.-+++.|..+|.|-+-..+..... .....+....++++|++ |.++|+++-...+.+..+.|||+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 3456666655555567888888999988877654432 33455666889999988 56677776544456778999999
Q ss_pred CCC--cee--EEeecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCC-ceeEEEecCCCCCCcceEEEcC-CCCEEE
Q 001477 575 SEG--AIK--RTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM-NMLTTVDADGGLPASPRLRFNK-EGSLLA 648 (1071)
Q Consensus 575 ~~~--~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~s~-~~~~l~ 648 (1071)
.++ .+. ..|.+.......+++|..+.+.+++|.....+.++|++.. .....+.- ..+..+...| .+.+++
T Consensus 137 ~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnT----k~vqG~tVdp~~~nY~c 212 (783)
T KOG1008|consen 137 NSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNT----KYVQGITVDPFSPNYFC 212 (783)
T ss_pred ccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhh----hhcccceecCCCCCcee
Confidence 876 221 1222212224568889988889999999889999998832 22222211 1456677888 777877
Q ss_pred EEeCCCcEEEEEc
Q 001477 649 VTTSDNGIKILAN 661 (1071)
Q Consensus 649 ~~~~dg~v~iw~~ 661 (1071)
+-. ||.|.+||.
T Consensus 213 s~~-dg~iAiwD~ 224 (783)
T KOG1008|consen 213 SNS-DGDIAIWDT 224 (783)
T ss_pred ccc-cCceeeccc
Confidence 665 899999994
No 366
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.50 E-value=0.0065 Score=59.93 Aligned_cols=205 Identities=16% Similarity=0.092 Sum_probs=128.8
Q ss_pred EEEEecCCc-EEEEEe-CCe-EEEEECCCCeEEEEEeCCCCC--eEEEEEcCCCCCEEEEEeCC-----CeEEEEEccCC
Q 001477 845 CIALSKNDS-YVMSAS-GGK-VSLFNMMTFKVMTMFMSPPPA--ATFLAFHPQDNNIIAIGMED-----SSVQIYNVRVD 914 (1071)
Q Consensus 845 ~v~~s~d~~-~la~~~-dg~-i~vwd~~~~~~~~~~~~~~~~--i~~l~~sp~~~~~la~g~~d-----g~v~vwd~~~~ 914 (1071)
.++++|--. -++.+- -|+ ..++|..+.+...++....+. .-.=.||| ||.+|...-.| |.|-|||...+
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~-dG~~LYATEndfd~~rGViGvYd~r~~ 150 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSP-DGRLLYATENDFDPNRGVIGVYDAREG 150 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCC-CCcEEEeecCCCCCCCceEEEEecccc
Confidence 577777543 455555 454 678999888777666543332 12237999 89988765444 68999998854
Q ss_pred -eEEEEecCcCCCeeEEEEcCCCCEEEEEeC------C------------CcEEEEECCCCceeeeeeecCCCCCCCCCC
Q 001477 915 -EVKTKLKGHQNRITGLAFSPTLNALVSSGA------D------------AQLCMWSIDKWEKLKSRFIQAPAGRQSPLV 975 (1071)
Q Consensus 915 -~~~~~l~~h~~~v~~l~~s~d~~~l~s~~~------d------------~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~ 975 (1071)
+.+.++..|.-.--.+.+.+||+.|+.+.. | -++.+-|..+|+.+.+..+.....+ .
T Consensus 151 fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~----l 226 (366)
T COG3490 151 FQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQ----L 226 (366)
T ss_pred cceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhh----c
Confidence 567788888877888999999999987653 1 1355666666665554444322222 4
Q ss_pred CceEEEEccCCCEEEEEE------CCeEEEEeC-CCCceeecCCCC----CCCCCeeEEEEecCCcEEEEEe-CCCeEEE
Q 001477 976 GETKVQFHNDQTHLLVVH------ESQISVYDS-KLECSRSWSPKD----ALPAPISSAIYSCDGLLVYAGF-CDGAIGV 1043 (1071)
Q Consensus 976 ~v~~~~~s~dg~~l~~~~------d~~i~vwd~-~~~~~~~~~~~~----~h~~~v~~~~~s~dg~~l~t~~-~Dg~i~v 1043 (1071)
.++.++.-+||+.++.+. |---.|=-. .++.+..+...+ .-...|-+++...+..+++..+ ..+...+
T Consensus 227 SiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi 306 (366)
T COG3490 227 SIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVI 306 (366)
T ss_pred ceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEE
Confidence 688999999998877642 111111111 222222111100 0145677888877666666555 4456888
Q ss_pred EEcCCCeEEEE
Q 001477 1044 FDAETLRFRCR 1054 (1071)
Q Consensus 1044 wd~~~~~~~~~ 1054 (1071)
||..+|..+..
T Consensus 307 ~da~tG~vv~~ 317 (366)
T COG3490 307 WDAATGAVVSE 317 (366)
T ss_pred EEcCCCcEEec
Confidence 99999998764
No 367
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.44 E-value=0.12 Score=58.66 Aligned_cols=244 Identities=9% Similarity=0.089 Sum_probs=126.7
Q ss_pred CeeEEEECCCCCEEEEE-eCCC----eEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeC---------
Q 001477 410 SVNRCVWGPDGLMLGVA-FSKH----IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD--------- 475 (1071)
Q Consensus 410 ~v~~~~~spd~~~la~~-~~dg----~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~--------- 475 (1071)
.+...++||||+++|.+ +..| .++++|+.+|+.+.. .+... ....+.|.+|++. ++.+...
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d--~i~~~--~~~~~~W~~d~~~-~~y~~~~~~~~~~~~~ 199 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD--GIENP--KFSSVSWSDDGKG-FFYTRFDEDQRTSDSG 199 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE--EEEEE--ESEEEEECTTSSE-EEEEECSTTTSS-CCG
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC--ccccc--ccceEEEeCCCCE-EEEEEeCcccccccCC
Confidence 34468899999999876 3333 599999999865432 11111 1223999999985 3344322
Q ss_pred -CCcEEEEEccCCcee--EEecCCCCC--eEEEEecccCCccEEEEEec-C---CeEEEEEcCCC----ceeEEe-cCCC
Q 001477 476 -DKMIKVWDVVAGRKQ--YTFEGHEAP--VYSVCPHHKESIQFIFSTAI-D---GKIKAWLYDYL----GSRVDY-DAPG 541 (1071)
Q Consensus 476 -d~~i~iwd~~~~~~~--~~~~~h~~~--v~~i~~~~~~~~~~l~s~~~-d---~~i~vwd~~~~----~~~~~~-~~~~ 541 (1071)
...|+.|.+.++..- ..+...... ...+..+.+ +.+++..+. . ..+.+.++... .....+ ....
T Consensus 200 ~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d--~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~ 277 (414)
T PF02897_consen 200 YPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKD--GRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRED 277 (414)
T ss_dssp CCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TT--SSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSS
T ss_pred CCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCc--ccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCC
Confidence 224788888776432 344444333 455666654 466654432 2 34677777664 122222 2223
Q ss_pred CcEEEEEEccCCCEEEEeccCCCCCCeEEEEeCCCCce---eEEeecccccceeEEEEeCCCCEEEEEe-CC--CcEEEE
Q 001477 542 NWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI---KRTYSGFRKRSLGVVQFDTTRNRFLAAG-DE--FQIKFW 615 (1071)
Q Consensus 542 ~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d--g~i~iw 615 (1071)
+....+... .+.+++... .+-..+.|...++..... ...+..+.. .+.-..+...+++|+... .+ ..|+++
T Consensus 278 ~~~~~v~~~-~~~~yi~Tn-~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~-~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~ 354 (414)
T PF02897_consen 278 GVEYYVDHH-GDRLYILTN-DDAPNGRLVAVDLADPSPAEWWTVLIPEDE-DVSLEDVSLFKDYLVLSYRENGSSRLRVY 354 (414)
T ss_dssp S-EEEEEEE-TTEEEEEE--TT-TT-EEEEEETTSTSGGGEEEEEE--SS-SEEEEEEEEETTEEEEEEEETTEEEEEEE
T ss_pred ceEEEEEcc-CCEEEEeeC-CCCCCcEEEEecccccccccceeEEcCCCC-ceeEEEEEEECCEEEEEEEECCccEEEEE
Confidence 333333333 333333332 333467788888876652 223433333 222233344455666543 33 368899
Q ss_pred eCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEE--eC--CCcEEEEEcCCh
Q 001477 616 DMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVT--TS--DNGIKILANSDG 664 (1071)
Q Consensus 616 d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~--~~--dg~v~iw~~~~~ 664 (1071)
++..+.....+..... ..|..+...+++..+... +. -+++..||+.++
T Consensus 355 ~~~~~~~~~~~~~p~~-g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~ 406 (414)
T PF02897_consen 355 DLDDGKESREIPLPEA-GSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATG 406 (414)
T ss_dssp ETT-TEEEEEEESSSS-SEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTT
T ss_pred ECCCCcEEeeecCCcc-eEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCC
Confidence 9985555555554432 245555555655544332 22 457888888776
No 368
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.43 E-value=0.037 Score=61.85 Aligned_cols=139 Identities=15% Similarity=0.159 Sum_probs=83.4
Q ss_pred EcCCCCCEEEEEeCCCeEEEEEccCCeEEEEecCcCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeecCCC
Q 001477 889 FHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPA 968 (1071)
Q Consensus 889 ~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~~~v~~l~~s~d~~~l~s~~~d~~v~vWd~~~~~~~~~~~~~~~~ 968 (1071)
++. +....+....++.+.+.+-...+. +. ..+++..|+.||+|+++|.-..+|.+.+.+.+-.+........
T Consensus 186 l~~-~~~~~i~~~~g~~i~~i~~~~~~~---i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~--- 257 (410)
T PF04841_consen 186 LSS-DRVVEILLANGETIYIIDENSFKQ---ID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTD--- 257 (410)
T ss_pred eec-CcceEEEEecCCEEEEEEcccccc---cc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecC---
Confidence 444 344444444555565444332211 22 2467999999999999999999999999887665543222222
Q ss_pred CCCCCCCCceEEEEccCCCEEEEEECCeEEEEeCCCCceeecCCCCCCCCCeeEEEEecCCcEEEEEeCCCeEEEEEcCC
Q 001477 969 GRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAET 1048 (1071)
Q Consensus 969 ~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~t~~~Dg~i~vwd~~~ 1048 (1071)
. .....+++|..++..++.- +..+.+....+ ..+.|..++..++..-.|| |||..-++
T Consensus 258 ~----~~~p~~~~WCG~dav~l~~-~~~l~lvg~~~----------------~~~~~~~~~~~~l~~E~DG-~riit~~~ 315 (410)
T PF04841_consen 258 S----KSPPKQMAWCGNDAVVLSW-EDELLLVGPDG----------------DSISFWYDGPVILVSEIDG-VRIITSTS 315 (410)
T ss_pred c----CCCCcEEEEECCCcEEEEe-CCEEEEECCCC----------------CceEEeccCceEEeccCCc-eEEEeCCc
Confidence 0 1345778887775443333 33444433211 2345555666556666676 89998888
Q ss_pred CeEEEEeCC
Q 001477 1049 LRFRCRIGP 1057 (1071)
Q Consensus 1049 ~~~~~~~~~ 1057 (1071)
.+++.++..
T Consensus 316 ~~~l~~Vp~ 324 (410)
T PF04841_consen 316 HEFLQRVPD 324 (410)
T ss_pred eEEEEECCH
Confidence 888887654
No 369
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=97.40 E-value=0.074 Score=55.74 Aligned_cols=191 Identities=12% Similarity=0.066 Sum_probs=96.8
Q ss_pred EEEEEecCCcEEEEEeCCeEEEEECCCCeE-EEEEeCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEccC--CeEEEEe
Q 001477 844 ACIALSKNDSYVMSASGGKVSLFNMMTFKV-MTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV--DEVKTKL 920 (1071)
Q Consensus 844 ~~v~~s~d~~~la~~~dg~i~vwd~~~~~~-~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~--~~~~~~l 920 (1071)
..+....++..++++..|.|..= .+.++. ........+.+..+..++ +|++++++.......-||-.. .++...
T Consensus 107 ~~i~~l~~~~~~l~~~~G~iy~T-~DgG~tW~~~~~~~~gs~~~~~r~~-dG~~vavs~~G~~~~s~~~G~~~w~~~~r- 183 (302)
T PF14870_consen 107 FGITALGDGSAELAGDRGAIYRT-TDGGKTWQAVVSETSGSINDITRSS-DGRYVAVSSRGNFYSSWDPGQTTWQPHNR- 183 (302)
T ss_dssp EEEEEEETTEEEEEETT--EEEE-SSTTSSEEEEE-S----EEEEEE-T-TS-EEEEETTSSEEEEE-TT-SS-EEEE--
T ss_pred eEEEEcCCCcEEEEcCCCcEEEe-CCCCCCeeEcccCCcceeEeEEECC-CCcEEEEECcccEEEEecCCCccceEEcc-
Confidence 34444445554444444543221 222222 222334456788999999 899999886666666777542 233332
Q ss_pred cCcCCCeeEEEEcCCCCEEEEEeCCCcEEEEE-CCCCceeeeeeecCCCCCCCCCCCceEEEEccCCCEEEEEECCeEEE
Q 001477 921 KGHQNRITGLAFSPTLNALVSSGADAQLCMWS-IDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISV 999 (1071)
Q Consensus 921 ~~h~~~v~~l~~s~d~~~l~s~~~d~~v~vWd-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~v 999 (1071)
.-..+|.+|.|+||+.+.+.+ +.|.|++=+ ....+.-.......... ...+..++|.+++...|++..|.+.+
T Consensus 184 -~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~----~~~~ld~a~~~~~~~wa~gg~G~l~~ 257 (302)
T PF14870_consen 184 -NSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTN----GYGILDLAYRPPNEIWAVGGSGTLLV 257 (302)
T ss_dssp --SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS------S-EEEEEESSSS-EEEEESTT-EEE
T ss_pred -CccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccC----ceeeEEEEecCCCCEEEEeCCccEEE
Confidence 345789999999998876654 888888877 22222211111111111 14578999999999999988886654
Q ss_pred EeCCCCceeecCCCCCCCCCeeEEEEecCCcEEEEEeCCCeEEEE
Q 001477 1000 YDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVF 1044 (1071)
Q Consensus 1000 wd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~t~~~Dg~i~vw 1044 (1071)
=.=.++.-........-....+.+.|.++.+-++. +.+|.|.-|
T Consensus 258 S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~l-G~~G~ll~~ 301 (302)
T PF14870_consen 258 STDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVL-GQDGVLLRY 301 (302)
T ss_dssp ESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE--STTEEEEE
T ss_pred eCCCCccceECccccCCCCceEEEEEcCCCceEEE-CCCcEEEEe
Confidence 33244433333222223667899999877665554 568887655
No 370
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.39 E-value=0.0083 Score=69.65 Aligned_cols=160 Identities=14% Similarity=0.029 Sum_probs=89.0
Q ss_pred CCeEEEEEcCCCCCEEEEEe------CCC--eEEEEEccCCeEEEEecCcCCCeeEEEEcCCCCEEEEEeCC-CcEEEEE
Q 001477 882 PAATFLAFHPQDNNIIAIGM------EDS--SVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGAD-AQLCMWS 952 (1071)
Q Consensus 882 ~~i~~l~~sp~~~~~la~g~------~dg--~v~vwd~~~~~~~~~l~~h~~~v~~l~~s~d~~~l~s~~~d-~~v~vWd 952 (1071)
..+.+.++|| +|+.+|... .|+ .+.+++. .+.......+. ..+.-.|+|||+.|++.... ..+++.+
T Consensus 350 ~~vsspaiSp-dG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALSR-SGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceECC-CCCEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecCC--CCCCceECCCCCceEEEecCcceEEEec
Confidence 4678999999 777776655 244 4555554 33332223333 37889999999988877533 2233332
Q ss_pred CCCCceeeeeeecCCCCCCCCCCCceEEEEccCCCEEEEEECCeEEEEeC---CCCceeecC---CCCCCCCCeeEEEEe
Q 001477 953 IDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDS---KLECSRSWS---PKDALPAPISSAIYS 1026 (1071)
Q Consensus 953 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~---~~~~~~~~~---~~~~h~~~v~~~~~s 1026 (1071)
-.....+....+............|..+.|||||+.++...++.|.+=-+ ......... ....-...+.++.|.
T Consensus 426 ~~~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~ 505 (591)
T PRK13616 426 DPATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWR 505 (591)
T ss_pred cCCCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCceeecccEEeecccCCccccceEe
Confidence 21111111000100000001125699999999999999877788887443 233222200 011113346889999
Q ss_pred cCCcEEEEEeCCCeEEEEEc
Q 001477 1027 CDGLLVYAGFCDGAIGVFDA 1046 (1071)
Q Consensus 1027 ~dg~~l~t~~~Dg~i~vwd~ 1046 (1071)
.++.++ ++..++...+|.+
T Consensus 506 ~~~~L~-V~~~~~~~~v~~v 524 (591)
T PRK13616 506 TGDSLV-VGRSDPEHPVWYV 524 (591)
T ss_pred cCCEEE-EEecCCCCceEEE
Confidence 999965 4555555555654
No 371
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.36 E-value=0.2 Score=55.65 Aligned_cols=241 Identities=14% Similarity=0.125 Sum_probs=155.3
Q ss_pred CeeEEEECCCCCEEEEEeC-CCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccCCc
Q 001477 410 SVNRCVWGPDGLMLGVAFS-KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR 488 (1071)
Q Consensus 410 ~v~~~~~spd~~~la~~~~-dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~ 488 (1071)
....+...|++..+..... ...+..-+.. ...... ....-...-..++.++++.+ ..++...+..|.+.|..+.+
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~-~n~~~~--~~~~g~~~p~~i~v~~~~~~-vyv~~~~~~~v~vid~~~~~ 107 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDAT-SNTVTQ--SLSVGGVYPAGVAVNPAGNK-VYVTTGDSNTVSVIDTATNT 107 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccc-cceeee--eccCCCccccceeeCCCCCe-EEEecCCCCeEEEEcCcccc
Confidence 4556788888865554432 2234444433 111111 11111133457788888886 56666667899999988777
Q ss_pred eeEEecCCCCCeEEEEecccCCccEEEEEec---CCeEEEEEcCCCceeEEecCCCCcEEEEEEccCCCEEEEeccCCCC
Q 001477 489 KQYTFEGHEAPVYSVCPHHKESIQFIFSTAI---DGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEG 565 (1071)
Q Consensus 489 ~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~---d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~ 565 (1071)
......-.. ....+++++++ ..+..+.. ++++.+.|..+............+ ..++++|+|+.++.+.. .
T Consensus 108 ~~~~~~vG~-~P~~~~~~~~~--~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~---~ 180 (381)
T COG3391 108 VLGSIPVGL-GPVGLAVDPDG--KYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNS---D 180 (381)
T ss_pred eeeEeeecc-CCceEEECCCC--CEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEec---C
Confidence 776554322 56677888765 44544443 688888888877776664433334 88999999998887652 4
Q ss_pred CCeEEEEeCCCCceeE-E----eecccccceeEEEEeCCCCEEEEEeC---CCcEEEEeCCCCceeEEEecCCCCCCcce
Q 001477 566 ESHLVEWNESEGAIKR-T----YSGFRKRSLGVVQFDTTRNRFLAAGD---EFQIKFWDMDNMNMLTTVDADGGLPASPR 637 (1071)
Q Consensus 566 ~~~i~iwd~~~~~~~~-~----~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 637 (1071)
++.+.+.|.......+ . ..... .-..+.++|+|++++.... ++.+...|..++.........+.. ....
T Consensus 181 ~~~v~vi~~~~~~v~~~~~~~~~~~~~--~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~ 257 (381)
T COG3391 181 DNTVSVIDTSGNSVVRGSVGSLVGVGT--GPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRG 257 (381)
T ss_pred CCeEEEEeCCCcceeccccccccccCC--CCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCc
Confidence 7889999977665553 1 11111 2355889999997776543 368999999988777662222222 3467
Q ss_pred EEEcCCCCEEEEEeC-CCcEEEEEcCCh
Q 001477 638 LRFNKEGSLLAVTTS-DNGIKILANSDG 664 (1071)
Q Consensus 638 ~~~s~~~~~l~~~~~-dg~v~iw~~~~~ 664 (1071)
+..+|+|..+.+... .+.+.+.|..+.
T Consensus 258 v~~~p~g~~~yv~~~~~~~V~vid~~~~ 285 (381)
T COG3391 258 VAVDPAGKAAYVANSQGGTVSVIDGATD 285 (381)
T ss_pred eeECCCCCEEEEEecCCCeEEEEeCCCC
Confidence 899999999888855 478888887765
No 372
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.35 E-value=0.12 Score=54.85 Aligned_cols=229 Identities=14% Similarity=0.103 Sum_probs=128.4
Q ss_pred CCCeEEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeEEEECCCCCEEEEEeCCCeEEEEE
Q 001477 357 QQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYT 436 (1071)
Q Consensus 357 ~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~la~~~~dg~i~iwd 436 (1071)
.++ .|+.|+.+| +.+++......... ..+...|..+...|+-+.|++-+ |+.+.+++
T Consensus 6 ~~~-~L~vGt~~G-l~~~~~~~~~~~~~--------------------i~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~ 62 (275)
T PF00780_consen 6 WGD-RLLVGTEDG-LYVYDLSDPSKPTR--------------------ILKLSSITQLSVLPELNLLLVLS-DGQLYVYD 62 (275)
T ss_pred CCC-EEEEEECCC-EEEEEecCCcccee--------------------EeecceEEEEEEecccCEEEEEc-CCccEEEE
Confidence 344 567788888 88999832221110 11333499999999888776664 59999999
Q ss_pred ecCCCccceeeE-----------eecccCCEEEEE--EecCCCceEEEEEeCCCcEEEEEccCC-----ceeEEecCCCC
Q 001477 437 YNPTGELRQHLE-----------IDAHVGGVNDIA--FAHPNKQLCIVTCGDDKMIKVWDVVAG-----RKQYTFEGHEA 498 (1071)
Q Consensus 437 ~~~~~~~~~~~~-----------~~~h~~~v~~~~--~s~d~~~~~l~s~~~d~~i~iwd~~~~-----~~~~~~~~h~~ 498 (1071)
+..-........ .......+...+ =...+.. .|+.+- .+.|.+|.+... +..+.+. -..
T Consensus 63 L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~-~L~va~-kk~i~i~~~~~~~~~f~~~~ke~~-lp~ 139 (275)
T PF00780_consen 63 LDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSR-RLCVAV-KKKILIYEWNDPRNSFSKLLKEIS-LPD 139 (275)
T ss_pred chhhccccccccccccccccccccccccCCeeEEeeccccccce-EEEEEE-CCEEEEEEEECCcccccceeEEEE-cCC
Confidence 876443321100 011222344444 1123332 444443 558888877653 3445554 457
Q ss_pred CeEEEEecccCCccEEEEEecCCeEEEEEcCCCceeEEecCCC------------CcEEEEEEccCCCEEEEeccCCCCC
Q 001477 499 PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPG------------NWCTMMAYSADGTRLFSCGTSKEGE 566 (1071)
Q Consensus 499 ~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~------------~~i~~~~~s~~~~~l~~~~~~~d~~ 566 (1071)
.+.+++|.. +.++.|..++ ..+.|+.++.......... .++..+.. +++.+|++..
T Consensus 140 ~~~~i~~~~----~~i~v~~~~~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~~------ 207 (275)
T PF00780_consen 140 PPSSIAFLG----NKICVGTSKG-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCYD------ 207 (275)
T ss_pred CcEEEEEeC----CEEEEEeCCc-eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEec------
Confidence 888898873 5677766444 6778888655543322111 12333333 4456666542
Q ss_pred CeEEEEeCCCCceeE--EeecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecC
Q 001477 567 SHLVEWNESEGAIKR--TYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD 629 (1071)
Q Consensus 567 ~~i~iwd~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 629 (1071)
. +-++=-..|++.+ .+.-.. ....+++. ..++++.+.+ .|.||++.++++++.+...
T Consensus 208 ~-~g~fv~~~G~~~r~~~i~W~~--~p~~~~~~--~pyli~~~~~-~iEV~~~~~~~lvQ~i~~~ 266 (275)
T PF00780_consen 208 N-IGVFVNKNGEPSRKSTIQWSS--APQSVAYS--SPYLIAFSSN-SIEVRSLETGELVQTIPLP 266 (275)
T ss_pred c-eEEEEcCCCCcCcccEEEcCC--chhEEEEE--CCEEEEECCC-EEEEEECcCCcEEEEEECC
Confidence 2 3333223455443 222222 33445553 3577777664 5999999999999988754
No 373
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.34 E-value=0.061 Score=53.40 Aligned_cols=269 Identities=12% Similarity=0.144 Sum_probs=149.6
Q ss_pred eeEEeecCCCCeEEEEeecCCCeEEEEEcCCCe-EEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeEEEE
Q 001477 338 TVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGD-ISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW 416 (1071)
Q Consensus 338 ~~~~~~~h~~~V~~~~fsp~g~~lla~gs~dg~-i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~ 416 (1071)
+++..+.-...--.++|+|..++-++.+-.-|+ ..++|..+++.+... .......+.+|. .|
T Consensus 59 k~v~~~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~-----------~s~~~RHfyGHG------vf 121 (366)
T COG3490 59 KIVFATALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTL-----------VSQEGRHFYGHG------VF 121 (366)
T ss_pred ceeeeeecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEE-----------ecccCceeeccc------cc
Confidence 333333334455568899988766676665554 578888877655320 001111245665 69
Q ss_pred CCCCCEEEEEeC-----CCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEE-EccCCcee
Q 001477 417 GPDGLMLGVAFS-----KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW-DVVAGRKQ 490 (1071)
Q Consensus 417 spd~~~la~~~~-----dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iw-d~~~~~~~ 490 (1071)
||||.+|...-+ .|.|-|||...+ .....++..|.-.-..+.|.+||+ .++.+ +|-|... |. |+..
T Consensus 122 s~dG~~LYATEndfd~~rGViGvYd~r~~--fqrvgE~~t~GiGpHev~lm~DGr--tlvva--nGGIethpdf--gR~~ 193 (366)
T COG3490 122 SPDGRLLYATENDFDPNRGVIGVYDAREG--FQRVGEFSTHGIGPHEVTLMADGR--TLVVA--NGGIETHPDF--GRTE 193 (366)
T ss_pred CCCCcEEEeecCCCCCCCceEEEEecccc--cceecccccCCcCcceeEEecCCc--EEEEe--CCceeccccc--Cccc
Confidence 999999987644 378999999843 344457778887888999999999 45443 2334333 11 1111
Q ss_pred EEecCCCCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCceeEE--ec--CCCCcEEEEEEccCCCEEEEeccCCCCC
Q 001477 491 YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD--YD--APGNWCTMMAYSADGTRLFSCGTSKEGE 566 (1071)
Q Consensus 491 ~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~--~~--~~~~~i~~~~~s~~~~~l~~~~~~~d~~ 566 (1071)
-.+-++. | .++ +.|..+++.+.+ +. .+...|..++..+||+..+.|-..++.+
T Consensus 194 -------lNldsMe--P----Slv----------lld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~ 250 (366)
T COG3490 194 -------LNLDSME--P----SLV----------LLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRN 250 (366)
T ss_pred -------cchhhcC--c----cEE----------EEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCc
Confidence 1111111 1 111 122222222221 11 2344677888888888777665432222
Q ss_pred CeE-EEEeCCCCceeEEeeccc------ccceeEEEEeCCCCEEEEEe-CCCcEEEEeCCCCceeEEEecCCCCCCcceE
Q 001477 567 SHL-VEWNESEGAIKRTYSGFR------KRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRL 638 (1071)
Q Consensus 567 ~~i-~iwd~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~ 638 (1071)
..- .+=-...++.+.-+.... ...|.+++.+.+...++..+ ..+...+||..+|..+..-.... +..+
T Consensus 251 d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~d----aaGv 326 (366)
T COG3490 251 DLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAALPD----AAGV 326 (366)
T ss_pred cCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEecccccc----cccc
Confidence 111 111112344433332221 11467788887666666666 45567789999999877654332 2223
Q ss_pred EEcCCCCEEEEEeCCCcEEEEE
Q 001477 639 RFNKEGSLLAVTTSDNGIKILA 660 (1071)
Q Consensus 639 ~~s~~~~~l~~~~~dg~v~iw~ 660 (1071)
+ +...-+++.+.+|.+.++.
T Consensus 327 a--~~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 327 A--AAKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred e--eccCceEEecCCceEEecc
Confidence 3 3344466677788888774
No 374
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=97.27 E-value=0.081 Score=54.78 Aligned_cols=207 Identities=15% Similarity=0.100 Sum_probs=111.9
Q ss_pred CCeEEEEEecCCcEEEEEe--CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEE-ccCCe--
Q 001477 841 ESAACIALSKNDSYVMSAS--GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYN-VRVDE-- 915 (1071)
Q Consensus 841 ~~v~~v~~s~d~~~la~~~--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd-~~~~~-- 915 (1071)
..+.+.++|+|++.+|... ++.-.+|-...+....... ....++...|++ ++.+.++...+...+++. ..+++
T Consensus 24 ~~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 24 YDVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TGGSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred ccccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec-cCCccccccccC-CCCEEEEEcCCCceEEEEecCCCcce
Confidence 3688999999999887765 4443344333333333322 233788889999 687777777677777774 33332
Q ss_pred EEEE-ecCcCCCeeEEEEcCCCCEEEEEe---CCCcEEEEECCCCceeeeeeecCCCCCC-CCCCCceEEEEccCCCEEE
Q 001477 916 VKTK-LKGHQNRITGLAFSPTLNALVSSG---ADAQLCMWSIDKWEKLKSRFIQAPAGRQ-SPLVGETKVQFHNDQTHLL 990 (1071)
Q Consensus 916 ~~~~-l~~h~~~v~~l~~s~d~~~l~s~~---~d~~v~vWd~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~dg~~l~ 990 (1071)
.+.. ...-.+.|+.+.+||||..+|... .++.|.+=-+.....-....+....... .....++.++|.+++.+++
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V 181 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVV 181 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEE
Confidence 2211 111122899999999999888665 3566777655432211011111111000 1125789999999999888
Q ss_pred EEE--CCeEEE-EeCCCCceeecCCCCCCCCCeeEEEEecCCcEEEEEeCCCeEEEEEcCCCeEEEEe
Q 001477 991 VVH--ESQISV-YDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRI 1055 (1071)
Q Consensus 991 ~~~--d~~i~v-wd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~ 1055 (1071)
.+. +..+.. ....+.....+.. . ...+..++...+...++.. .++.+.- ...+..-.++
T Consensus 182 ~~~~~~~~~~~~v~~dG~~~~~l~~-~--~~~~~v~a~~~~~~~~~~t-~~~~~~~--~~~~~~W~~v 243 (253)
T PF10647_consen 182 LGRSAGGPVVRLVSVDGGPSTPLPS-V--NLGVPVVAVAASPSTVYVT-DDGGVLQ--SRSGASWREV 243 (253)
T ss_pred EeCCCCCceeEEEEccCCcccccCC-C--CCCcceEEeeCCCcEEEEE-CCCcEEE--CCCCCcceEc
Confidence 753 333333 4444444333311 1 2333344444444454433 3444332 4444444333
No 375
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.15 E-value=0.081 Score=56.76 Aligned_cols=191 Identities=16% Similarity=0.142 Sum_probs=95.2
Q ss_pred EEEEecCCcEEEEEe---C----CeEEEEECCCCeEEEEEeCCCC---CeEEEEEcCCCCCEEEEEe-------------
Q 001477 845 CIALSKNDSYVMSAS---G----GKVSLFNMMTFKVMTMFMSPPP---AATFLAFHPQDNNIIAIGM------------- 901 (1071)
Q Consensus 845 ~v~~s~d~~~la~~~---d----g~i~vwd~~~~~~~~~~~~~~~---~i~~l~~sp~~~~~la~g~------------- 901 (1071)
.+..-|+|..++++- + |.+.++|-++.+.........+ --..+-|.| ..+.+++..
T Consensus 134 T~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf~~ 212 (461)
T PF05694_consen 134 TVHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEKGFNP 212 (461)
T ss_dssp EEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEET-TTTEEEE-B---HHHHTT---T
T ss_pred eeeecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcC-CCCEEEEeccCChhhcccCCCh
Confidence 344557998888762 2 5699999999988888765332 345677778 666666653
Q ss_pred -------CCCeEEEEEccCCeEEEEecCcC--CCeeEEEEcCC--CCE-EEEEeCCCcEEEE-ECCCCceeeeeeecCCC
Q 001477 902 -------EDSSVQIYNVRVDEVKTKLKGHQ--NRITGLAFSPT--LNA-LVSSGADAQLCMW-SIDKWEKLKSRFIQAPA 968 (1071)
Q Consensus 902 -------~dg~v~vwd~~~~~~~~~l~~h~--~~v~~l~~s~d--~~~-l~s~~~d~~v~vW-d~~~~~~~~~~~~~~~~ 968 (1071)
...++.+||+.+.+.++++.--. .....|.|..+ ..+ ++.+.-..+|..| .-+.++.....++....
T Consensus 213 ~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~ 292 (461)
T PF05694_consen 213 EDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPA 292 (461)
T ss_dssp TTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--
T ss_pred hHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCC
Confidence 24589999999999999887332 23557777655 333 3333334444444 43555555444444332
Q ss_pred C----CCCC---------CCCceEEEEccCCCEEEEEE--CCeEEEEeC-C---CCceeecC-CC------------CCC
Q 001477 969 G----RQSP---------LVGETKVQFHNDQTHLLVVH--ESQISVYDS-K---LECSRSWS-PK------------DAL 1016 (1071)
Q Consensus 969 ~----~~~~---------~~~v~~~~~s~dg~~l~~~~--d~~i~vwd~-~---~~~~~~~~-~~------------~~h 1016 (1071)
. -..+ +.-|+.+..|.|+++|.++. .|.|+.||+ + .+...+.. .. ..-
T Consensus 293 ~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l 372 (461)
T PF05694_consen 293 KKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRL 372 (461)
T ss_dssp EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS-----
T ss_pred cccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCcccccccc
Confidence 1 1100 24579999999999999975 999999999 2 22222211 10 011
Q ss_pred CCCeeEEEEecCCcEEEEEe
Q 001477 1017 PAPISSAIYSCDGLLVYAGF 1036 (1071)
Q Consensus 1017 ~~~v~~~~~s~dg~~l~t~~ 1036 (1071)
.+....|..|-||+.|+..+
T Consensus 373 ~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 373 RGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp -S----EEE-TTSSEEEEE-
T ss_pred CCCCCeEEEccCCeEEEEEe
Confidence 33457889999999988654
No 376
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.14 E-value=0.0031 Score=65.50 Aligned_cols=110 Identities=10% Similarity=0.149 Sum_probs=88.0
Q ss_pred hHHHHHHHHHHhhhccHHHHHHHHHHHcCCCcc----------HHHHHHHhhcccHHHHHHHhcCcCcccccchhhHHHH
Q 001477 5 SRELVFLILQFLDEEKFKETVHKLEQESGFFFN----------MKHFEDQVQAGEWDEVERYLCGFTKVEDNRYSMKIFF 74 (1071)
Q Consensus 5 ~~e~~rli~q~L~~~g~~~s~~~L~~Esg~~~~----------~~~l~~~i~~g~w~~~~~~l~~l~~~~~~~~~~~~~~ 74 (1071)
.+.+..+|..++...|..+.+..|-+|+|...+ +.++-+++..|+-.-|++.+..-...-..+ ...+-|
T Consensus 116 ~~~ln~ai~~h~~rqGm~dv~~~l~~Ea~~~~~~~~~~~~F~el~~Iv~~lke~Dl~~aLeWa~~~~~~L~~~-~s~LE~ 194 (394)
T KOG2817|consen 116 SQVLNEAIVYHFYRQGMDDVGECLIKEAGLSEDESKSRTEFVELNQIVEALKERDLEPALEWAESNRQKLKEK-SSSLEF 194 (394)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHhccchhHHHHHHHhhhhhccc-cccHHH
Confidence 444688999999999999999999999998752 688888999999999999887643221112 224889
Q ss_pred HHHHHHHHHHhcccCHH--HHHHHHHhhcccccccCHHHHHHH
Q 001477 75 EIRKQKYLEALDRQDRA--KAVEILVKDLKVFSSFNEELFKEI 115 (1071)
Q Consensus 75 ~i~~~~~lEll~~~~~~--~A~~~l~~~~~~~~~~~~~~~~~l 115 (1071)
.|..+.|++++..|... +|+...|+.++|+......+.+.|
T Consensus 195 ~Lh~l~fl~l~~~g~~~~~eAl~Yar~~~~~F~~~~~~eIQkl 237 (394)
T KOG2817|consen 195 KLHSLHFLSLIRGGKSDQREALRYARTHFAPFVADHLREIQKL 237 (394)
T ss_pred HHHHHHHHHHHhcCCcCcHHHHHHHHHhcCccccchHHHHHHH
Confidence 99999999999999887 999999999999966554444433
No 377
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.12 E-value=0.27 Score=52.08 Aligned_cols=221 Identities=15% Similarity=0.111 Sum_probs=125.5
Q ss_pred EECCCCCE-EEEEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccCCceeEEe
Q 001477 415 VWGPDGLM-LGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF 493 (1071)
Q Consensus 415 ~~spd~~~-la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 493 (1071)
.|.++... +.+--..+.|.-|+..+++.. .+ .+.+.+.++..-..+. .|+++.. -+.+++.+++..+..+
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~----~~-~~p~~~~~~~~~d~~g--~Lv~~~~--g~~~~~~~~~~~~t~~ 101 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKR----VF-PSPGGFSSGALIDAGG--RLIACEH--GVRLLDPDTGGKITLL 101 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceE----EE-ECCCCcccceeecCCC--eEEEEcc--ccEEEeccCCceeEEe
Confidence 46676664 444456788999998866422 22 2344455555544454 4555533 4667776666553222
Q ss_pred cC-----CCCCeEEEEecccCCccEEEEEec---------CCeEEEEEcC-CCceeEEecCCCCcEEEEEEccCCCEEEE
Q 001477 494 EG-----HEAPVYSVCPHHKESIQFIFSTAI---------DGKIKAWLYD-YLGSRVDYDAPGNWCTMMAYSADGTRLFS 558 (1071)
Q Consensus 494 ~~-----h~~~v~~i~~~~~~~~~~l~s~~~---------d~~i~vwd~~-~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 558 (1071)
.. .....+.....|++ .+.++... -..-.+|-++ .+........+-..-+.++||||++.++.
T Consensus 102 ~~~~~~~~~~r~ND~~v~pdG--~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~ 179 (307)
T COG3386 102 AEPEDGLPLNRPNDGVVDPDG--RIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYV 179 (307)
T ss_pred ccccCCCCcCCCCceeEcCCC--CEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEE
Confidence 11 12344555666543 44333322 0111455555 33344444443455678999999998887
Q ss_pred eccCCCCCCeEEEEeCCC--Cc----eeEEeecccccceeEEEEeCCCCEEEEEeCCC-cEEEEeCCCCceeEEEecCCC
Q 001477 559 CGTSKEGESHLVEWNESE--GA----IKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEF-QIKFWDMDNMNMLTTVDADGG 631 (1071)
Q Consensus 559 ~~~~~d~~~~i~iwd~~~--~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~ 631 (1071)
+-. ..+.|+.|++.. +. ....+.....+.--.++...+|++.+++..+| .|.+|+.+ ++++..+..+..
T Consensus 180 aDT---~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~ 255 (307)
T COG3386 180 ADT---PANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVK 255 (307)
T ss_pred EeC---CCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCC
Confidence 753 356687777652 21 11111111222445677888888886554444 89999999 999998887642
Q ss_pred CCCcceEEEc-CCCCEEEEEeC
Q 001477 632 LPASPRLRFN-KEGSLLAVTTS 652 (1071)
Q Consensus 632 ~~~v~~~~~s-~~~~~l~~~~~ 652 (1071)
.+++++|- |+.+.|++.+.
T Consensus 256 --~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 256 --RPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred --CCccceEeCCCcCEEEEEec
Confidence 56777775 45555555544
No 378
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.10 E-value=0.04 Score=59.95 Aligned_cols=173 Identities=18% Similarity=0.226 Sum_probs=104.6
Q ss_pred CeEEEEECCCCeEEEEEeCCC-CCeEEE---EEcCC---CCCEEEEEeC----------CCeEEEEEccCC-----eE--
Q 001477 861 GKVSLFNMMTFKVMTMFMSPP-PAATFL---AFHPQ---DNNIIAIGME----------DSSVQIYNVRVD-----EV-- 916 (1071)
Q Consensus 861 g~i~vwd~~~~~~~~~~~~~~-~~i~~l---~~sp~---~~~~la~g~~----------dg~v~vwd~~~~-----~~-- 916 (1071)
..|++.|..+.+.+..+.-.. ..++++ .+..+ ...+|++|+. .|.|.++++... ++
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 468888988888776655333 234444 34431 1568887763 299999999984 22
Q ss_pred EEEecCcCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCc-eeeeeeecCCCCCCCCCCCceEEEEccCCCEEEEEE-C
Q 001477 917 KTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWE-KLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVH-E 994 (1071)
Q Consensus 917 ~~~l~~h~~~v~~l~~s~d~~~l~s~~~d~~v~vWd~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-d 994 (1071)
+... ...++|++++-- ++. |+.+. .+.|.+|++...+ .......... ..+.++. ..+.++++|+ -
T Consensus 82 i~~~-~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~-------~~i~sl~--~~~~~I~vgD~~ 148 (321)
T PF03178_consen 82 IHST-EVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSP-------FYITSLS--VFKNYILVGDAM 148 (321)
T ss_dssp EEEE-EESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BS-------SSEEEEE--EETTEEEEEESS
T ss_pred EEEE-eecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhheecce-------EEEEEEe--ccccEEEEEEcc
Confidence 2222 357889999876 444 44443 4679999999877 3322222111 1234444 4466888875 4
Q ss_pred CeEEEEeC--CCCceeecCCCCCCCCCeeEEEEecCCcEEEEEeCCCeEEEEEcC
Q 001477 995 SQISVYDS--KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAE 1047 (1071)
Q Consensus 995 ~~i~vwd~--~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~t~~~Dg~i~vwd~~ 1047 (1071)
..+.++.. ....+..... ......++++.|-+|++.++++..+|.+.++..+
T Consensus 149 ~sv~~~~~~~~~~~l~~va~-d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 149 KSVSLLRYDEENNKLILVAR-DYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp SSEEEEEEETTTE-EEEEEE-ESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred cCEEEEEEEccCCEEEEEEe-cCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 66766654 3333333221 2225568899998777889999999999999886
No 379
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.07 E-value=0.034 Score=65.54 Aligned_cols=147 Identities=16% Similarity=0.117 Sum_probs=97.5
Q ss_pred CCCEEEE-EeCCCeEEEEEccCCeEEEEecCcCCC-eeEEEEcC-----CCCEEEEEeCCCcEEEEECCCCc-eeeeeee
Q 001477 893 DNNIIAI-GMEDSSVQIYNVRVDEVKTKLKGHQNR-ITGLAFSP-----TLNALVSSGADAQLCMWSIDKWE-KLKSRFI 964 (1071)
Q Consensus 893 ~~~~la~-g~~dg~v~vwd~~~~~~~~~l~~h~~~-v~~l~~s~-----d~~~l~s~~~d~~v~vWd~~~~~-~~~~~~~ 964 (1071)
+.++|+. ......|+-.|+..|+.+..+..|... |..++-.. +..--+.|-.+..+..||.+-.. .+-....
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~ 571 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQS 571 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccc
Confidence 4444443 345678999999999999999988764 55544321 12234456667789999987532 1110001
Q ss_pred cCCCCCCCCCCCceEEEEccCCCEEEEEECCeEEEEeCCCCceeecCCCCCCCCCeeEEEEecCCcEEEEEeCCCeEEEE
Q 001477 965 QAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVF 1044 (1071)
Q Consensus 965 ~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~t~~~Dg~i~vw 1044 (1071)
.... .....++++-+.+|...+.+.+|.|++||-.+..-++..+. -..+|..|..+.||++|++.+ +..+.++
T Consensus 572 k~Y~----~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~--lG~pI~~iDvt~DGkwilaTc-~tyLlLi 644 (794)
T PF08553_consen 572 KQYS----SKNNFSCFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPG--LGDPIIGIDVTADGKWILATC-KTYLLLI 644 (794)
T ss_pred cccc----cCCCceEEEecCCceEEEEeCCCcEEeecccchhhhhcCCC--CCCCeeEEEecCCCcEEEEee-cceEEEE
Confidence 1111 11446788888888766667899999999755444444443 378999999999999998554 7778888
Q ss_pred Ec
Q 001477 1045 DA 1046 (1071)
Q Consensus 1045 d~ 1046 (1071)
+.
T Consensus 645 ~t 646 (794)
T PF08553_consen 645 DT 646 (794)
T ss_pred EE
Confidence 86
No 380
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.06 E-value=0.0016 Score=44.20 Aligned_cols=39 Identities=36% Similarity=0.635 Sum_probs=34.9
Q ss_pred CeEEEEecCcCCCeeEEEEcCCCCEEEEEeCCCcEEEEE
Q 001477 914 DEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 952 (1071)
Q Consensus 914 ~~~~~~l~~h~~~v~~l~~s~d~~~l~s~~~d~~v~vWd 952 (1071)
++++..+..|...|.++.|++++.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 456677788999999999999999999999999999996
No 381
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.05 E-value=0.19 Score=53.17 Aligned_cols=223 Identities=15% Similarity=0.089 Sum_probs=133.7
Q ss_pred EEeecCCCeEEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeEEEECCCCCEEEEEeCCCe
Q 001477 352 MDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHI 431 (1071)
Q Consensus 352 ~~fsp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~la~~~~dg~ 431 (1071)
..|.|++..++.+--..+.|.-|+..+++... | .+.+.+.++..-.++..|+++.. -
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~------~---------------~~p~~~~~~~~~d~~g~Lv~~~~--g 86 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKKRV------F---------------PSPGGFSSGALIDAGGRLIACEH--G 86 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCceEE------E---------------ECCCCcccceeecCCCeEEEEcc--c
Confidence 45777877777777778899999988765332 1 13334455555555555655533 3
Q ss_pred EEEEEecCCCccceeeEee-cc-cCCEEEEEEecCCCceEEEEEeC-----------CCcEEEEEccCCceeEEecCCCC
Q 001477 432 VHLYTYNPTGELRQHLEID-AH-VGGVNDIAFAHPNKQLCIVTCGD-----------DKMIKVWDVVAGRKQYTFEGHEA 498 (1071)
Q Consensus 432 i~iwd~~~~~~~~~~~~~~-~h-~~~v~~~~~s~d~~~~~l~s~~~-----------d~~i~iwd~~~~~~~~~~~~h~~ 498 (1071)
+.+++.+++.......... +. ...-+.+...|+|. +.++... -|.++..|. .+..+..+..+-.
T Consensus 87 ~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~--~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~ 163 (307)
T COG3386 87 VRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGR--IWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLT 163 (307)
T ss_pred cEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCC--EEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEE
Confidence 6677776554422211111 11 23567888899998 4443322 123444443 5666666666666
Q ss_pred CeEEEEecccCCccEEEEE-ecCCeEEEEEcCC-----Cce--eEEecCCCCcEEEEEEccCCCEEEEeccCCCCCCeEE
Q 001477 499 PVYSVCPHHKESIQFIFST-AIDGKIKAWLYDY-----LGS--RVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLV 570 (1071)
Q Consensus 499 ~v~~i~~~~~~~~~~l~s~-~~d~~i~vwd~~~-----~~~--~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~ 570 (1071)
.-+.|+|+|++ +.++.+ +..+.|.-|++.. ... ........+..-.++...+|.+-+++.. +.+.|.
T Consensus 164 ~~NGla~SpDg--~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~---~g~~v~ 238 (307)
T COG3386 164 IPNGLAFSPDG--KTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVW---GGGRVV 238 (307)
T ss_pred ecCceEECCCC--CEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEeccc---CCceEE
Confidence 77899999976 455444 5568888887763 111 1222233445556777788887764432 234799
Q ss_pred EEeCCCCceeEEeecccccceeEEEEe-CCCCEEEEEe
Q 001477 571 EWNESEGAIKRTYSGFRKRSLGVVQFD-TTRNRFLAAG 607 (1071)
Q Consensus 571 iwd~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~ 607 (1071)
+|+.. |+.+..+..... .+.+++|- ++.+.|+..+
T Consensus 239 ~~~pd-G~l~~~i~lP~~-~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 239 RFNPD-GKLLGEIKLPVK-RPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred EECCC-CcEEEEEECCCC-CCccceEeCCCcCEEEEEe
Confidence 99988 999888887754 56777775 4455555543
No 382
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.04 E-value=0.078 Score=57.67 Aligned_cols=142 Identities=12% Similarity=0.110 Sum_probs=87.4
Q ss_pred CCEEEEEeC---------C-CeEEEEEecCC----CccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEcc
Q 001477 420 GLMLGVAFS---------K-HIVHLYTYNPT----GELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV 485 (1071)
Q Consensus 420 ~~~la~~~~---------d-g~i~iwd~~~~----~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~ 485 (1071)
..+|++|.. . |.|.++++... ..+..... ....++|++++-- .+ .|+.+. .+.|.+|++.
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~-~~~~g~V~ai~~~-~~---~lv~~~-g~~l~v~~l~ 115 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHS-TEVKGPVTAICSF-NG---RLVVAV-GNKLYVYDLD 115 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEE-EEESS-EEEEEEE-TT---EEEEEE-TTEEEEEEEE
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEE-EeecCcceEhhhh-CC---EEEEee-cCEEEEEEcc
Confidence 467777743 2 88999999984 23332222 2457889998876 33 344443 4789999998
Q ss_pred CCc-eeEEe-cCCCCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCce-eE--EecCCCCcEEEEEEccCCCEEEEec
Q 001477 486 AGR-KQYTF-EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS-RV--DYDAPGNWCTMMAYSADGTRLFSCG 560 (1071)
Q Consensus 486 ~~~-~~~~~-~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~-~~--~~~~~~~~i~~~~~s~~~~~l~~~~ 560 (1071)
..+ ....- ......+.++... + ++++.|.....+.++.++.... .. .-.....+++++.+-++++.++++.
T Consensus 116 ~~~~l~~~~~~~~~~~i~sl~~~--~--~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D 191 (321)
T PF03178_consen 116 NSKTLLKKAFYDSPFYITSLSVF--K--NYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGD 191 (321)
T ss_dssp TTSSEEEEEEE-BSSSEEEEEEE--T--TEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEE
T ss_pred CcccchhhheecceEEEEEEecc--c--cEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEc
Confidence 877 33321 1233366666654 2 6899999888888876654333 22 2233455788999987777666653
Q ss_pred cCCCCCCeEEEEeCC
Q 001477 561 TSKEGESHLVEWNES 575 (1071)
Q Consensus 561 ~~~d~~~~i~iwd~~ 575 (1071)
.++.+.++...
T Consensus 192 ----~~gnl~~l~~~ 202 (321)
T PF03178_consen 192 ----KDGNLFVLRYN 202 (321)
T ss_dssp ----TTSEEEEEEE-
T ss_pred ----CCCeEEEEEEC
Confidence 47778887764
No 383
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.01 E-value=0.76 Score=50.53 Aligned_cols=84 Identities=12% Similarity=0.204 Sum_probs=61.4
Q ss_pred CcEEEEEEccCCCEEEEeccCCCCCCeEEEEeCCCCceeEEeecccccceeEEEEeCCC-----------------CEEE
Q 001477 542 NWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR-----------------NRFL 604 (1071)
Q Consensus 542 ~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-----------------~~l~ 604 (1071)
..+.+++.+|++++.++. |.-|.|.++|+.++..++.++|..+..+.-+.....+ .+|+
T Consensus 308 R~~~~i~~sP~~~laA~t----DslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~Lv 383 (415)
T PF14655_consen 308 REGESICLSPSGRLAAVT----DSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLV 383 (415)
T ss_pred ceEEEEEECCCCCEEEEE----cCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEE
Confidence 367889999998877775 4588999999999999999888876444433322221 1233
Q ss_pred E-EeCCCcEEEEeCCCCceeEEEecC
Q 001477 605 A-AGDEFQIKFWDMDNMNMLTTVDAD 629 (1071)
Q Consensus 605 ~-~~~dg~i~iwd~~~~~~~~~~~~~ 629 (1071)
. +-..|.|.||.++.|..+..+...
T Consensus 384 IyaprRg~lEvW~~~~g~Rv~a~~v~ 409 (415)
T PF14655_consen 384 IYAPRRGILEVWSMRQGPRVAAFNVG 409 (415)
T ss_pred EEeccCCeEEEEecCCCCEEEEEEeC
Confidence 2 567899999999999888877643
No 384
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.01 E-value=0.0032 Score=69.06 Aligned_cols=93 Identities=13% Similarity=0.253 Sum_probs=79.7
Q ss_pred CCCeEEEEEecCCcEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeE-EEEEcCCCCCEEEEEeCCCeEEEEEccCCeEE
Q 001477 840 EESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAAT-FLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVK 917 (1071)
Q Consensus 840 ~~~v~~v~~s~d~~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~-~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~ 917 (1071)
...+.-+.|+|.-..+|.+. +|.+.+..+. .+.+.++..|...++ +++|.| ||++||+|-.||+|++-|+.++..+
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~-DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRP-DGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecC-CCCEEEEEecCCeEEEEEccCCCce
Confidence 56688899999999999998 8999999998 888899988888777 999999 8999999999999999999998766
Q ss_pred EEe-cCcCCCeeEEEEcC
Q 001477 918 TKL-KGHQNRITGLAFSP 934 (1071)
Q Consensus 918 ~~l-~~h~~~v~~l~~s~ 934 (1071)
... ..-...|.++-|++
T Consensus 98 ~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 98 VSFLFSVETDISKGIWDR 115 (665)
T ss_pred eccccccccchheeeccc
Confidence 652 23455688888863
No 385
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.95 E-value=1.5 Score=52.78 Aligned_cols=197 Identities=13% Similarity=0.131 Sum_probs=113.7
Q ss_pred EEEEEeCCCcEEEEEccCCceeEEecCCCCC--------eEEEEecc--------------cCCccEEEEEecCCeEEEE
Q 001477 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAP--------VYSVCPHH--------------KESIQFIFSTAIDGKIKAW 526 (1071)
Q Consensus 469 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~--------v~~i~~~~--------------~~~~~~l~s~~~d~~i~vw 526 (1071)
.++.++.++.|.-.|..+|+.+-++...... ...+++.. ...+..++.++.|+.+.-.
T Consensus 196 ~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiAL 275 (764)
T TIGR03074 196 TLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIAL 275 (764)
T ss_pred EEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEEE
Confidence 4566666777777787788777665432110 11122211 1123578888899999999
Q ss_pred EcCCCceeEEecCCCC------------cEEEEEEcc--CCCEEEEeccCCC------CCCeEEEEeCCCCceeEEeecc
Q 001477 527 LYDYLGSRVDYDAPGN------------WCTMMAYSA--DGTRLFSCGTSKE------GESHLVEWNESEGAIKRTYSGF 586 (1071)
Q Consensus 527 d~~~~~~~~~~~~~~~------------~i~~~~~s~--~~~~l~~~~~~~d------~~~~i~iwd~~~~~~~~~~~~~ 586 (1071)
|.++++....+..... ....+.-.| .+..++.++...| ..+.|+-+|.++|+.+..+...
T Consensus 276 DA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~~g 355 (764)
T TIGR03074 276 DADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWDPG 355 (764)
T ss_pred ECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEecC
Confidence 9998888765432111 000111122 2334555543222 2678999999999998876531
Q ss_pred c----------------ccce-eEEEEeCCCCEEEEEe------------------CCCcEEEEeCCCCceeEEEecCCC
Q 001477 587 R----------------KRSL-GVVQFDTTRNRFLAAG------------------DEFQIKFWDMDNMNMLTTVDADGG 631 (1071)
Q Consensus 587 ~----------------~~~v-~~~~~~~~~~~l~~~~------------------~dg~i~iwd~~~~~~~~~~~~~~~ 631 (1071)
. ...+ ...++.+....++.+. ..+.|.-.|.++|+....++...|
T Consensus 356 ~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~~h 435 (764)
T TIGR03074 356 NPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQTVHH 435 (764)
T ss_pred CCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecccCC
Confidence 0 0011 2345555555555421 234577788889988877754222
Q ss_pred C-------CCcceEEEcC-CCC---EEEEEeCCCcEEEEEcCChh
Q 001477 632 L-------PASPRLRFNK-EGS---LLAVTTSDNGIKILANSDGV 665 (1071)
Q Consensus 632 ~-------~~v~~~~~s~-~~~---~l~~~~~dg~v~iw~~~~~~ 665 (1071)
. ....-+.+.. +|+ .++.++.+|.+.++|-.+++
T Consensus 436 D~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~ 480 (764)
T TIGR03074 436 DLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGE 480 (764)
T ss_pred ccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCC
Confidence 1 0111122322 553 78999999999999999993
No 386
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=0.004 Score=68.29 Aligned_cols=94 Identities=15% Similarity=0.150 Sum_probs=77.8
Q ss_pred CCeEEEEEcCCCCCEEEEEeCCCeEEEEEccCCeEEEEecCcCCCee-EEEEcCCCCEEEEEeCCCcEEEEECCCCceee
Q 001477 882 PAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRIT-GLAFSPTLNALVSSGADAQLCMWSIDKWEKLK 960 (1071)
Q Consensus 882 ~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~~~v~-~l~~s~d~~~l~s~~~d~~v~vWd~~~~~~~~ 960 (1071)
..|.-+.|+| .-.++|++..+|.|-+..+. .+.+.++.-|...++ +++|.|||+.||.|-.||+|++-|++++..+.
T Consensus 21 ~~i~~~ewnP-~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 21 INIKRIEWNP-KMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred cceEEEEEcC-ccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 3577899999 88999999999999999988 777888887777777 99999999999999999999999999988664
Q ss_pred eeeecCCCCCCCCCCCceEEEEcc
Q 001477 961 SRFIQAPAGRQSPLVGETKVQFHN 984 (1071)
Q Consensus 961 ~~~~~~~~~~~~~~~~v~~~~~s~ 984 (1071)
..... ....|.++.|++
T Consensus 99 ~~~~s-------~e~~is~~~w~~ 115 (665)
T KOG4640|consen 99 SFLFS-------VETDISKGIWDR 115 (665)
T ss_pred ccccc-------cccchheeeccc
Confidence 43111 115577778873
No 387
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.88 E-value=0.18 Score=55.38 Aligned_cols=82 Identities=12% Similarity=0.208 Sum_probs=58.4
Q ss_pred CCCeEEEEEecCCcEEEEEe-CCeEEEEECCCCeEEEEEeCCCCC-eEEEEEcCCCC----------------C-EEEEE
Q 001477 840 EESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPA-ATFLAFHPQDN----------------N-IIAIG 900 (1071)
Q Consensus 840 ~~~v~~v~~s~d~~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~-i~~l~~sp~~~----------------~-~la~g 900 (1071)
...+.+++.+|++++.|+.+ -|.|.++|+.++..++.++|-.+. +.-+....... . +++.+
T Consensus 307 ~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIya 386 (415)
T PF14655_consen 307 KREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYA 386 (415)
T ss_pred CceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEe
Confidence 56689999999999888876 599999999999888887764432 22222111011 1 34456
Q ss_pred eCCCeEEEEEccCCeEEEEec
Q 001477 901 MEDSSVQIYNVRVDEVKTKLK 921 (1071)
Q Consensus 901 ~~dg~v~vwd~~~~~~~~~l~ 921 (1071)
-.-|.|.||.++.|..+..+.
T Consensus 387 prRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 387 PRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred ccCCeEEEEecCCCCEEEEEE
Confidence 678899999999888777665
No 388
>PRK10115 protease 2; Provisional
Probab=96.87 E-value=1.6 Score=52.50 Aligned_cols=243 Identities=9% Similarity=0.021 Sum_probs=119.5
Q ss_pred CeeEEEECCCCCEEEEEeCC-----CeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCC-----CcE
Q 001477 410 SVNRCVWGPDGLMLGVAFSK-----HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD-----KMI 479 (1071)
Q Consensus 410 ~v~~~~~spd~~~la~~~~d-----g~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d-----~~i 479 (1071)
.+..+.|||||++||.+... ..|++.|+.++..+.. .+.+ . -..++|++|++. ++++...+ ..|
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~--~i~~-~--~~~~~w~~D~~~-~~y~~~~~~~~~~~~v 201 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE--LLDN-V--EPSFVWANDSWT-FYYVRKHPVTLLPYQV 201 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc--cccC-c--ceEEEEeeCCCE-EEEEEecCCCCCCCEE
Confidence 46778999999999887432 3588999988764321 1111 1 146999999985 33433322 368
Q ss_pred EEEEccCC--ceeEEecCCCCCeEEEEecccCCccEEEEEec---CCeEEEEEcCC--CceeEEecCCCCcEEEEEEccC
Q 001477 480 KVWDVVAG--RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI---DGKIKAWLYDY--LGSRVDYDAPGNWCTMMAYSAD 552 (1071)
Q Consensus 480 ~iwd~~~~--~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~---d~~i~vwd~~~--~~~~~~~~~~~~~i~~~~~s~~ 552 (1071)
+.+++.++ +-...+........-..+.+ .++.+++..+. ++.+.+++.+. ......+.........+. ..
T Consensus 202 ~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s-~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~- 278 (686)
T PRK10115 202 WRHTIGTPASQDELVYEEKDDTFYVSLHKT-TSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HY- 278 (686)
T ss_pred EEEECCCChhHCeEEEeeCCCCEEEEEEEc-CCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eC-
Confidence 88898887 33334443333333122222 24455544433 35688888533 222222222222222222 22
Q ss_pred CCEEEEeccCCCCCCeEEEEeCCC-CceeEEeecc-cccceeEEEEeCCCCEEEEEeCCCcEEEEeCCC-CceeEEEecC
Q 001477 553 GTRLFSCGTSKEGESHLVEWNESE-GAIKRTYSGF-RKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN-MNMLTTVDAD 629 (1071)
Q Consensus 553 ~~~l~~~~~~~d~~~~i~iwd~~~-~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~ 629 (1071)
+..+...+..+.....|...++.. ++. ..+-.+ ....+..+.+.. +..+++...+|.-+++-+.. +..+..+...
T Consensus 279 ~~~ly~~tn~~~~~~~l~~~~~~~~~~~-~~l~~~~~~~~i~~~~~~~-~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~~ 356 (686)
T PRK10115 279 QHRFYLRSNRHGKNFGLYRTRVRDEQQW-EELIPPRENIMLEGFTLFT-DWLVVEERQRGLTSLRQINRKTREVIGIAFD 356 (686)
T ss_pred CCEEEEEEcCCCCCceEEEecCCCcccC-eEEECCCCCCEEEEEEEEC-CEEEEEEEeCCEEEEEEEcCCCCceEEecCC
Confidence 234433332122244455556552 222 233333 333677777773 34444555666655544332 2233433311
Q ss_pred CCCCCcceEEEc--CCCC-EEEEEeC---CCcEEEEEcCCh
Q 001477 630 GGLPASPRLRFN--KEGS-LLAVTTS---DNGIKILANSDG 664 (1071)
Q Consensus 630 ~~~~~v~~~~~s--~~~~-~l~~~~~---dg~v~iw~~~~~ 664 (1071)
.. ..+..+.++ +++. ++++.+. -+.+..+|..++
T Consensus 357 ~~-~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~ 396 (686)
T PRK10115 357 DP-AYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTG 396 (686)
T ss_pred CC-ceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCC
Confidence 11 112223344 3333 4444333 467888887665
No 389
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.84 E-value=0.067 Score=55.40 Aligned_cols=149 Identities=18% Similarity=0.128 Sum_probs=90.8
Q ss_pred CeEEEEEcCCCCCEEEEEe---CCCeEEEEEccCCeEEEEecCcCCCeeEEEEcCCCCEEEEEeCCCcEEEEE-CCCCce
Q 001477 883 AATFLAFHPQDNNIIAIGM---EDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS-IDKWEK 958 (1071)
Q Consensus 883 ~i~~l~~sp~~~~~la~g~---~dg~v~vwd~~~~~~~~~l~~h~~~v~~l~~s~d~~~l~s~~~d~~v~vWd-~~~~~~ 958 (1071)
.+.+.++|+ +++.+|... ....++++.... .....+.+. .++...|++++...+....+...+++. ...++.
T Consensus 25 ~~~s~AvS~-dg~~~A~v~~~~~~~~L~~~~~~~-~~~~~~~g~--~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~ 100 (253)
T PF10647_consen 25 DVTSPAVSP-DGSRVAAVSEGDGGRSLYVGPAGG-PVRPVLTGG--SLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTG 100 (253)
T ss_pred cccceEECC-CCCeEEEEEEcCCCCEEEEEcCCC-cceeeccCC--ccccccccCCCCEEEEEcCCCceEEEEecCCCcc
Confidence 688999999 777666555 334555554332 222223333 688899999988777777677777774 333332
Q ss_pred eeeeeecCCCCCCCCCCCceEEEEccCCCEEEEEE----CCeEEEEeC--CCCc-eeec----CCCCCCCCCeeEEEEec
Q 001477 959 LKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVH----ESQISVYDS--KLEC-SRSW----SPKDALPAPISSAIYSC 1027 (1071)
Q Consensus 959 ~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~----d~~i~vwd~--~~~~-~~~~----~~~~~h~~~v~~~~~s~ 1027 (1071)
... .+...... ..|+.+.+||||..+|... ++.|.+--+ +..- ...+ .........++.++|.+
T Consensus 101 ~~~-~v~~~~~~----~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~ 175 (253)
T PF10647_consen 101 EPV-EVDWPGLR----GRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSD 175 (253)
T ss_pred eeE-EecccccC----CceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecC
Confidence 211 11111110 1699999999999998743 678887766 2111 1111 11112256889999999
Q ss_pred CCcEEEEEeCCCe
Q 001477 1028 DGLLVYAGFCDGA 1040 (1071)
Q Consensus 1028 dg~~l~t~~~Dg~ 1040 (1071)
++.+++.+...+.
T Consensus 176 ~~~L~V~~~~~~~ 188 (253)
T PF10647_consen 176 DSTLVVLGRSAGG 188 (253)
T ss_pred CCEEEEEeCCCCC
Confidence 9998886665443
No 390
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.81 E-value=0.027 Score=60.67 Aligned_cols=157 Identities=13% Similarity=0.117 Sum_probs=103.3
Q ss_pred CEEEEEeCCCeEEEEEccCCeEEEEecCcCCCeeEEEEcCCCCE--E-----EEEeCCCcEEEEECCCCceeeeeeecCC
Q 001477 895 NIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNA--L-----VSSGADAQLCMWSIDKWEKLKSRFIQAP 967 (1071)
Q Consensus 895 ~~la~g~~dg~v~vwd~~~~~~~~~l~~h~~~v~~l~~s~d~~~--l-----~s~~~d~~v~vWd~~~~~~~~~~~~~~~ 967 (1071)
-++.++.....++-.|++.|+.+.++.-|.+ |.-+.+.||.+. | +.|-.|..|.-||.+-...- .+...
T Consensus 347 lil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~---kl~~~ 422 (644)
T KOG2395|consen 347 LILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN---KLAVV 422 (644)
T ss_pred eEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc---eeeee
Confidence 3455666667899999999999999997777 888888887542 2 22446778999998743221 11111
Q ss_pred CCCCCCC-CCceEEEEccCCCEEEEEECCeEEEEeCCCCceeecCCCCCCCCCeeEEEEecCCcEEEEEeCCCeEEEEEc
Q 001477 968 AGRQSPL-VGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDA 1046 (1071)
Q Consensus 968 ~~~~~~~-~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~t~~~Dg~i~vwd~ 1046 (1071)
.++.-.. ....+.+-..+|..++.+.+|.|++||-.+..-.+..+.- ..+|+.+..+.||++|++. .+..+.+-++
T Consensus 423 q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgL--G~~I~hVdvtadGKwil~T-c~tyLlLi~t 499 (644)
T KOG2395|consen 423 QSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDRIGRRAKTALPGL--GDAIKHVDVTADGKWILAT-CKTYLLLIDT 499 (644)
T ss_pred eccccccccccceeeecCCceEEEeecCCcEEeehhhhhhhhhccccc--CCceeeEEeeccCcEEEEe-cccEEEEEEE
Confidence 2221111 2345666666776555577999999998555555544443 7899999999999998854 4777777665
Q ss_pred --CCCeEEEEeCCC
Q 001477 1047 --ETLRFRCRIGPS 1058 (1071)
Q Consensus 1047 --~~~~~~~~~~~~ 1058 (1071)
..|.....+...
T Consensus 500 ~~kdg~~~~~~Gf~ 513 (644)
T KOG2395|consen 500 LIKDGDYAGKTGFE 513 (644)
T ss_pred ecccCCcccccccc
Confidence 334444444433
No 391
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.70 E-value=0.18 Score=43.17 Aligned_cols=99 Identities=14% Similarity=0.218 Sum_probs=68.0
Q ss_pred eEEEEEec---CC-cEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEccCCeEE
Q 001477 843 AACIALSK---ND-SYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVK 917 (1071)
Q Consensus 843 v~~v~~s~---d~-~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~ 917 (1071)
|+++++.. || ..|++|+ |..|++|+-. +.+.++. ..+.|++++-.. . ..++.+..+|+|-+|+- .+.+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~-e~~~v~~L~~~~-~-~~F~Y~l~NGTVGvY~~--~~Rl 74 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEIT-ETDKVTSLCSLG-G-GRFAYALANGTVGVYDR--SQRL 74 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEe-cccceEEEEEcC-C-CEEEEEecCCEEEEEeC--ccee
Confidence 56666654 33 4677777 9999999854 5666665 456788888776 4 67889999999999974 3334
Q ss_pred EEecCcCCCeeEEEEcCC---C-CEEEEEeCCCcEE
Q 001477 918 TKLKGHQNRITGLAFSPT---L-NALVSSGADAQLC 949 (1071)
Q Consensus 918 ~~l~~h~~~v~~l~~s~d---~-~~l~s~~~d~~v~ 949 (1071)
...+.. ..++++++..- | .-|++|-.+|.|-
T Consensus 75 WRiKSK-~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 75 WRIKSK-NQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeeccC-CCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 455533 33677776542 2 2688888888764
No 392
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.67 E-value=0.0056 Score=41.36 Aligned_cols=39 Identities=18% Similarity=0.411 Sum_probs=34.0
Q ss_pred CeEEEEEeCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEE
Q 001477 871 FKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYN 910 (1071)
Q Consensus 871 ~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd 910 (1071)
++....+..|...|.++.|++ ++.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSP-DGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECC-CCCEEEEecCCCeEEEcC
Confidence 355667778889999999999 779999999999999996
No 393
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.63 E-value=0.22 Score=53.56 Aligned_cols=149 Identities=12% Similarity=0.069 Sum_probs=73.2
Q ss_pred ccEEEEEe-cCCeEEEEEcCCCc----eeEEecC---C----CCcEEEEEEccCCCEEEEeccC--CCCCCeEEEEeCCC
Q 001477 511 IQFIFSTA-IDGKIKAWLYDYLG----SRVDYDA---P----GNWCTMMAYSADGTRLFSCGTS--KEGESHLVEWNESE 576 (1071)
Q Consensus 511 ~~~l~s~~-~d~~i~vwd~~~~~----~~~~~~~---~----~~~i~~~~~s~~~~~l~~~~~~--~d~~~~i~iwd~~~ 576 (1071)
.++|+..+ ..+.|.+.|+.+.. ....+.. . -.....+..-|+|+.++++-.+ +++.+-+.+.|-++
T Consensus 87 Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~t 166 (461)
T PF05694_consen 87 RRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGET 166 (461)
T ss_dssp S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT
T ss_pred CCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCcc
Confidence 36677666 67889999987422 2222221 1 0122334445899888876543 34556788999888
Q ss_pred CceeEEeecccc--cceeEEEEeCCCCEEEEEe--------------------CCCcEEEEeCCCCceeEEEecCCCCCC
Q 001477 577 GAIKRTYSGFRK--RSLGVVQFDTTRNRFLAAG--------------------DEFQIKFWDMDNMNMLTTVDADGGLPA 634 (1071)
Q Consensus 577 ~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~--------------------~dg~i~iwd~~~~~~~~~~~~~~~~~~ 634 (1071)
.+.......... ..-..+.+.|..+.+++.. ...++.+||+.+.+.++++........
T Consensus 167 f~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~ 246 (461)
T PF05694_consen 167 FEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQM 246 (461)
T ss_dssp --EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEE
T ss_pred ccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCc
Confidence 887777665332 1234577888888888853 235799999999999999987543223
Q ss_pred cceEEEcC--CCCEEEEEe-CCCcEEEE
Q 001477 635 SPRLRFNK--EGSLLAVTT-SDNGIKIL 659 (1071)
Q Consensus 635 v~~~~~s~--~~~~l~~~~-~dg~v~iw 659 (1071)
...+.|.. +..+=++++ -..+|..|
T Consensus 247 pLEvRflH~P~~~~gFvg~aLss~i~~~ 274 (461)
T PF05694_consen 247 PLEVRFLHDPDANYGFVGCALSSSIWRF 274 (461)
T ss_dssp EEEEEE-SSTT--EEEEEEE--EEEEEE
T ss_pred eEEEEecCCCCccceEEEEeccceEEEE
Confidence 45666654 344333333 23344444
No 394
>PRK10115 protease 2; Provisional
Probab=96.53 E-value=3 Score=50.36 Aligned_cols=243 Identities=9% Similarity=0.015 Sum_probs=120.6
Q ss_pred CeEEEEeecCCCeEEEEEcCCC----eEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeEEEECCCCCEE
Q 001477 348 NVMSMDFHPQQQTILLVGTNVG----DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLML 423 (1071)
Q Consensus 348 ~V~~~~fsp~g~~lla~gs~dg----~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~l 423 (1071)
.+..+.|||||+.++.+-+.+| .|++-|+.+|+.+.. ...+.-..++|++|++.|
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~---------------------~i~~~~~~~~w~~D~~~~ 186 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE---------------------LLDNVEPSFVWANDSWTF 186 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc---------------------cccCcceEEEEeeCCCEE
Confidence 5778899999996555544444 688889888764321 011111469999999977
Q ss_pred EEEeCC------CeEEEEEecCCCccceeeEeecccCCEE-EEEEecCCCceEEEEE--eCCCcEEEEEcc--CCceeEE
Q 001477 424 GVAFSK------HIVHLYTYNPTGELRQHLEIDAHVGGVN-DIAFAHPNKQLCIVTC--GDDKMIKVWDVV--AGRKQYT 492 (1071)
Q Consensus 424 a~~~~d------g~i~iwd~~~~~~~~~~~~~~~h~~~v~-~~~~s~d~~~~~l~s~--~~d~~i~iwd~~--~~~~~~~ 492 (1071)
+....+ ..|..+++.++..-. ...+........ .+..+.|++.+ ++.. ..++.+.+++.. ++.....
T Consensus 187 ~y~~~~~~~~~~~~v~~h~lgt~~~~d-~lv~~e~~~~~~~~~~~s~d~~~l-~i~~~~~~~~~~~l~~~~~~~~~~~~~ 264 (686)
T PRK10115 187 YYVRKHPVTLLPYQVWRHTIGTPASQD-ELVYEEKDDTFYVSLHKTTSKHYV-VIHLASATTSEVLLLDAELADAEPFVF 264 (686)
T ss_pred EEEEecCCCCCCCEEEEEECCCChhHC-eEEEeeCCCCEEEEEEEcCCCCEE-EEEEECCccccEEEEECcCCCCCceEE
Confidence 766442 357777887763211 112333233333 33334477753 3322 234578888843 3442222
Q ss_pred ecCCCCCeEEEEecccCCccEEEEEec---CCeEEEEEcCC-CceeEEecCC-CCcEEEEEEccCCCEEEEeccCCCCCC
Q 001477 493 FEGHEAPVYSVCPHHKESIQFIFSTAI---DGKIKAWLYDY-LGSRVDYDAP-GNWCTMMAYSADGTRLFSCGTSKEGES 567 (1071)
Q Consensus 493 ~~~h~~~v~~i~~~~~~~~~~l~s~~~---d~~i~vwd~~~-~~~~~~~~~~-~~~i~~~~~s~~~~~l~~~~~~~d~~~ 567 (1071)
+.........+. +. ++ .+++.... ...|...++.. .+....+... ...+..+.+. +++|+.... .++..
T Consensus 265 ~~~~~~~~~~~~-~~-~~-~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~--~~~l~~~~~-~~g~~ 338 (686)
T PRK10115 265 LPRRKDHEYSLD-HY-QH-RFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF--TDWLVVEER-QRGLT 338 (686)
T ss_pred EECCCCCEEEEE-eC-CC-EEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE--CCEEEEEEE-eCCEE
Confidence 222222222222 22 22 23333222 22344444442 2222233332 3367777776 445554432 23455
Q ss_pred eEEEEeCCCCceeEEee-cccccceeEEEEe--CCCC-EEEEEe---CCCcEEEEeCCCCc
Q 001477 568 HLVEWNESEGAIKRTYS-GFRKRSLGVVQFD--TTRN-RFLAAG---DEFQIKFWDMDNMN 621 (1071)
Q Consensus 568 ~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~--~~~~-~l~~~~---~dg~i~iwd~~~~~ 621 (1071)
.+.+++..++. +..+. .... .+..+.++ +++. .+++.+ .-+.++.+|+.+++
T Consensus 339 ~l~~~~~~~~~-~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 339 SLRQINRKTRE-VIGIAFDDPA-YVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred EEEEEcCCCCc-eEEecCCCCc-eEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 57777765433 33333 2111 22333344 3444 444432 45778889988765
No 395
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.50 E-value=0.06 Score=63.53 Aligned_cols=142 Identities=13% Similarity=0.143 Sum_probs=95.4
Q ss_pred EEEEEeCCCcEEEEEccCCceeEEecCCCCC-eEEEEeccc---CCccEEEEEecCCeEEEEEcCCCceeEEe-c----C
Q 001477 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAP-VYSVCPHHK---ESIQFIFSTAIDGKIKAWLYDYLGSRVDY-D----A 539 (1071)
Q Consensus 469 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~-v~~i~~~~~---~~~~~l~s~~~d~~i~vwd~~~~~~~~~~-~----~ 539 (1071)
+|........|+-.|+..|+.+..+..|... |..++-... -...-.+.|-.++.+..||.+..+..... . .
T Consensus 496 il~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~ 575 (794)
T PF08553_consen 496 ILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYS 575 (794)
T ss_pred EeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccc
Confidence 3444456788999999999999999887654 676654321 01234667778889999999976532211 1 2
Q ss_pred CCCcEEEEEEccCCCEEEEeccCCCCCCeEEEEeCCCCceeEEeecccccceeEEEEeCCCCEEEEEeCCCcEEEEeC
Q 001477 540 PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDM 617 (1071)
Q Consensus 540 ~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 617 (1071)
.....+|++-+.+|. ||+|+. +|.|++||--..+....+.+... +|..+..+.||+++++.+.. .|.+++.
T Consensus 576 ~~~~Fs~~aTt~~G~-iavgs~----~G~IRLyd~~g~~AKT~lp~lG~-pI~~iDvt~DGkwilaTc~t-yLlLi~t 646 (794)
T PF08553_consen 576 SKNNFSCFATTEDGY-IAVGSN----KGDIRLYDRLGKRAKTALPGLGD-PIIGIDVTADGKWILATCKT-YLLLIDT 646 (794)
T ss_pred cCCCceEEEecCCce-EEEEeC----CCcEEeecccchhhhhcCCCCCC-CeeEEEecCCCcEEEEeecc-eEEEEEE
Confidence 344678888877775 455543 67799999543333334555454 89999999999999987653 4555553
No 396
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.40 E-value=2.1 Score=47.27 Aligned_cols=281 Identities=11% Similarity=0.103 Sum_probs=145.1
Q ss_pred cCCCeEEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeEEEECC-----CCCEEEEEeCCC
Q 001477 356 PQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP-----DGLMLGVAFSKH 430 (1071)
Q Consensus 356 p~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~sp-----d~~~la~~~~dg 430 (1071)
++++..+++||.+|.++||+...+......-+ +-..-+.+|..++.-+ +...||+ -.-.
T Consensus 34 ~~~~d~IivGS~~G~LrIy~P~~~~~~~~~ll---------------lE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~ 97 (418)
T PF14727_consen 34 PSGSDKIIVGSYSGILRIYDPSGNEFQPEDLL---------------LETQLKDPILQVECGKFVSGSEDLQLAV-LHPR 97 (418)
T ss_pred CCCccEEEEeccccEEEEEccCCCCCCCccEE---------------EEEecCCcEEEEEeccccCCCCcceEEE-ecCC
Confidence 44445788999999999999855432211000 0122345777776532 2335555 4677
Q ss_pred eEEEEEecCCCcc------ceeeEeecccC--CEEEEEEecCCC---ceEEEEEeCCCcEEEEEccCCceeEEecCCCCC
Q 001477 431 IVHLYTYNPTGEL------RQHLEIDAHVG--GVNDIAFAHPNK---QLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAP 499 (1071)
Q Consensus 431 ~i~iwd~~~~~~~------~~~~~~~~h~~--~v~~~~~s~d~~---~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~ 499 (1071)
.+.||.+...... .....+..|.- ....++.-|-|. +..+..-+-||.+.+++-+.-...+.+.+ ---
T Consensus 98 kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~ll 176 (418)
T PF14727_consen 98 KLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLL 176 (418)
T ss_pred EEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCC
Confidence 8889988432111 11112223332 233344333221 22788889999999999554433334433 222
Q ss_pred eEEEEecccCCccEEEEEecCCeEEEEEcCCCce-----------------------eEEecCCCC--cEEEEEEccCCC
Q 001477 500 VYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS-----------------------RVDYDAPGN--WCTMMAYSADGT 554 (1071)
Q Consensus 500 v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~-----------------------~~~~~~~~~--~i~~~~~s~~~~ 554 (1071)
.-.+++.+.. +.+++++.+..+..|....... ...+...+. .|..+.++....
T Consensus 177 PgPl~Y~~~t--Dsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~ 254 (418)
T PF14727_consen 177 PGPLCYCPRT--DSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSES 254 (418)
T ss_pred CcCeEEeecC--CEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCCc
Confidence 2234555554 6788888888888886532100 001111111 333344443444
Q ss_pred EEEEeccCCCCCCeEEEEeCCCCceeEEeecccccceeEEEEeC----CC---CEEEEEeCCCcEEEEeCCCCceeEEEe
Q 001477 555 RLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT----TR---NRFLAAGDEFQIKFWDMDNMNMLTTVD 627 (1071)
Q Consensus 555 ~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~----~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~ 627 (1071)
.+++-+ +..+.+.+. +|......+-.-. +...+.|.. .+ ..++.++.++++.||.= .+++..-.
T Consensus 255 ~IvvLg-----er~Lf~l~~-~G~l~~~krLd~~-p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d--~~L~WsA~ 325 (418)
T PF14727_consen 255 DIVVLG-----ERSLFCLKD-NGSLRFQKRLDYN-PSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYED--TTLVWSAQ 325 (418)
T ss_pred eEEEEe-----cceEEEEcC-CCeEEEEEecCCc-eeeEEEEEeecccCCCCceEEEEEecCCeEEEEeC--CeEEEecC
Confidence 444443 455777765 3554433332221 222222222 22 24777889999999853 33333333
Q ss_pred cCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCh
Q 001477 628 ADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1071)
Q Consensus 628 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~ 664 (1071)
.....-.+....|..-...|++-+.+|.+.+-=+.|.
T Consensus 326 l~~~PVal~v~~~~~~~G~IV~Ls~~G~L~v~YLGTd 362 (418)
T PF14727_consen 326 LPHVPVALSVANFNGLKGLIVSLSDEGQLSVSYLGTD 362 (418)
T ss_pred CCCCCEEEEecccCCCCceEEEEcCCCcEEEEEeCCC
Confidence 2221112222233334558888899999988766555
No 397
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.34 E-value=0.1 Score=44.58 Aligned_cols=102 Identities=15% Similarity=0.143 Sum_probs=64.0
Q ss_pred eEEEEee---cCCCeEEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeEEEECCCCCEEEE
Q 001477 349 VMSMDFH---PQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1071)
Q Consensus 349 V~~~~fs---p~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~la~ 425 (1071)
|+++++. -||+.-|++||.|..|++|+=.. .+.. + .-.+.|++++-... ..++.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e--~~~E-------------------i-~e~~~v~~L~~~~~-~~F~Y 58 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE--IVAE-------------------I-TETDKVTSLCSLGG-GRFAY 58 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc--EEEE-------------------E-ecccceEEEEEcCC-CEEEE
Confidence 4555554 46656688899999999998442 2211 1 13456888877766 56889
Q ss_pred EeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEe---cCCCceEEEEEeCCCcEE
Q 001477 426 AFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFA---HPNKQLCIVTCGDDKMIK 480 (1071)
Q Consensus 426 ~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s---~d~~~~~l~s~~~d~~i~ 480 (1071)
+..+|+|-+|+-.. +.. ..+. ...+.++++. .||.. -|++|-.+|.|-
T Consensus 59 ~l~NGTVGvY~~~~-RlW----RiKS-K~~~~~~~~~D~~gdG~~-eLI~GwsnGkve 109 (111)
T PF14783_consen 59 ALANGTVGVYDRSQ-RLW----RIKS-KNQVTSMAFYDINGDGVP-ELIVGWSNGKVE 109 (111)
T ss_pred EecCCEEEEEeCcc-eee----eecc-CCCeEEEEEEcCCCCCce-EEEEEecCCeEE
Confidence 99999999998543 112 1222 2235565553 34443 578887777663
No 398
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.32 E-value=0.37 Score=56.32 Aligned_cols=232 Identities=11% Similarity=0.010 Sum_probs=120.1
Q ss_pred CCCEEEEEeCC------CeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCC------CcEEEEEccC
Q 001477 419 DGLMLGVAFSK------HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD------KMIKVWDVVA 486 (1071)
Q Consensus 419 d~~~la~~~~d------g~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d------~~i~iwd~~~ 486 (1071)
.+..++.|+.+ ..+..||..++.-. ....+. +...-.+++... +. +.++||.| .++..||..+
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~-~~a~m~-~~r~~~~~~~~~-~~--lYv~GG~~~~~~~l~~ve~YD~~~ 358 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWS-SLAPMP-SPRCRVGVAVLN-GK--LYVVGGYDSGSDRLSSVERYDPRT 358 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEe-ecCCCC-cccccccEEEEC-CE--EEEEccccCCCcccceEEEecCCC
Confidence 45566677665 35888888876322 111222 222334445543 44 78889888 3677888887
Q ss_pred CceeEE--ecC--CCCCeEEEEecccCCccEEEEEecCCe-----EEEEEcCCCceeEEecCCCCcEEEEEEccCCCEEE
Q 001477 487 GRKQYT--FEG--HEAPVYSVCPHHKESIQFIFSTAIDGK-----IKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLF 557 (1071)
Q Consensus 487 ~~~~~~--~~~--h~~~v~~i~~~~~~~~~~l~s~~~d~~-----i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 557 (1071)
++.... +.. +...+..+ +|.+.++|+.||. +..||..+.+-...-......-..-...-+|...+
T Consensus 359 ~~W~~~a~M~~~R~~~~v~~l------~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi 432 (571)
T KOG4441|consen 359 NQWTPVAPMNTKRSDFGVAVL------DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYI 432 (571)
T ss_pred CceeccCCccCccccceeEEE------CCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEE
Confidence 764331 111 11222222 4478889998865 66777665543332222221111122234566667
Q ss_pred EeccCCCCC--CeEEEEeCCCCceeEEeecccccceeEEEEeCCCCEEEEEeCCC-----cEEEEeCCCCceeEEEecCC
Q 001477 558 SCGTSKEGE--SHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEF-----QIKFWDMDNMNMLTTVDADG 630 (1071)
Q Consensus 558 ~~~~~~d~~--~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~ 630 (1071)
+||.++..+ ..+..||..+++-...-.-.....-..+ ..-++...+.||.|+ +|..+|..+.+-...-....
T Consensus 433 ~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~-a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~ 511 (571)
T KOG4441|consen 433 IGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGV-AVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTS 511 (571)
T ss_pred EcCcCCCccccceEEEEcCCCCceeecCCcccccccceE-EEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcc
Confidence 777544332 5688999887764432222111111122 233456667777665 37778888766444322211
Q ss_pred CCCCcceEEEcCCCCEEEEEeCCC-----cEEEEEcCCh
Q 001477 631 GLPASPRLRFNKEGSLLAVTTSDN-----GIKILANSDG 664 (1071)
Q Consensus 631 ~~~~v~~~~~s~~~~~l~~~~~dg-----~v~iw~~~~~ 664 (1071)
....+..+. -++...++|+.|| +|..||..++
T Consensus 512 ~rs~~g~~~--~~~~ly~vGG~~~~~~l~~ve~ydp~~d 548 (571)
T KOG4441|consen 512 PRSAVGVVV--LGGKLYAVGGFDGNNNLNTVECYDPETD 548 (571)
T ss_pred ccccccEEE--ECCEEEEEecccCccccceeEEcCCCCC
Confidence 111111122 2466677777665 4455554433
No 399
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.30 E-value=0.12 Score=57.03 Aligned_cols=168 Identities=13% Similarity=0.196 Sum_probs=97.4
Q ss_pred CCeEEEEEcCCCCCEEEEEe--CCCeEEEEEccCCeEEEEecCcCCCeeEEEEcCC----CCEEEEEeCCCcEEEEECCC
Q 001477 882 PAATFLAFHPQDNNIIAIGM--EDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPT----LNALVSSGADAQLCMWSIDK 955 (1071)
Q Consensus 882 ~~i~~l~~sp~~~~~la~g~--~dg~v~vwd~~~~~~~~~l~~h~~~v~~l~~s~d----~~~l~s~~~d~~v~vWd~~~ 955 (1071)
.++..++|.. +.+.+.+.- .+|.+++= +...+..|. .|..++|+|- -..|...-.-..|.||.+..
T Consensus 20 HPvhGlaWTD-GkqVvLT~L~l~~gE~kfG---ds~viGqFE----hV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 20 HPVHGLAWTD-GKQVVLTDLQLHNGEPKFG---DSKVIGQFE----HVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred ccccceEecC-CCEEEEEeeeeeCCccccC---CccEeeccc----eeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 4688899985 555555432 23333221 123344444 4889999984 32455566677899998863
Q ss_pred -----CceeeeeeecCCCCCCCCCCCceEEEEccCCCEEEEEECCeE-EEEeC--CCCceeecCCCCCCCCCeeEEEEec
Q 001477 956 -----WEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQI-SVYDS--KLECSRSWSPKDALPAPISSAIYSC 1027 (1071)
Q Consensus 956 -----~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i-~vwd~--~~~~~~~~~~~~~h~~~v~~~~~s~ 1027 (1071)
.+.+......... ..+.-...+.|.|....|++-....+ .++++ +...++.-... .+.|-|.||..
T Consensus 92 s~~e~~K~l~sQtcEi~e---~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~---~G~IhCACWT~ 165 (671)
T PF15390_consen 92 STTERNKLLMSQTCEIRE---PFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKT---SGLIHCACWTK 165 (671)
T ss_pred CccccccceeeeeeeccC---CcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccC---CceEEEEEecC
Confidence 2222111111111 11123468899999999998433333 45566 44444433332 78899999999
Q ss_pred CCcEEEEEe-CCCeEEEEEcCCCeEEEEeCCCcccCcccee
Q 001477 1028 DGLLVYAGF-CDGAIGVFDAETLRFRCRIGPSAYIPTYAVR 1067 (1071)
Q Consensus 1028 dg~~l~t~~-~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 1067 (1071)
||+.|+++- ..=.-++||=....+ ....+.|++.+.
T Consensus 166 DG~RLVVAvGSsLHSyiWd~~qKtL----~~CsfcPVFdv~ 202 (671)
T PF15390_consen 166 DGQRLVVAVGSSLHSYIWDSAQKTL----HRCSFCPVFDVG 202 (671)
T ss_pred cCCEEEEEeCCeEEEEEecCchhhh----hhCCcceeecCC
Confidence 999877543 333478898765533 333466666543
No 400
>PRK13684 Ycf48-like protein; Provisional
Probab=96.28 E-value=2.3 Score=46.30 Aligned_cols=158 Identities=11% Similarity=0.028 Sum_probs=89.8
Q ss_pred CCCeEEEEEcCCCCCEEEEEeCCCeEEEEEccCCeEEEE-ecCcCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcee
Q 001477 881 PPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK-LKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKL 959 (1071)
Q Consensus 881 ~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~-l~~h~~~v~~l~~s~d~~~l~s~~~d~~v~vWd~~~~~~~ 959 (1071)
.+.+.++.+.| ++.+++++ ..|.+..-.-..++.-.. -.+-...++++++.++++.++. +..|.+++=+.+.++.-
T Consensus 172 ~g~~~~i~~~~-~g~~v~~g-~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~v-g~~G~~~~~s~d~G~sW 248 (334)
T PRK13684 172 AGVVRNLRRSP-DGKYVAVS-SRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWML-ARGGQIRFNDPDDLESW 248 (334)
T ss_pred cceEEEEEECC-CCeEEEEe-CCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEE-ecCCEEEEccCCCCCcc
Confidence 45688999999 77777655 455554321122221111 2234457899999999887665 55676653334444321
Q ss_pred eeeeecCCCCCCCCCCCceEEEEccCCCEEEEEECCeEEEEeCCCCceeecCCCCCCCCCeeEEEEecCCcEEEEEeCCC
Q 001477 960 KSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDG 1039 (1071)
Q Consensus 960 ~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~t~~~Dg 1039 (1071)
... ..+... ....+..+++.|++..++++.+|.|..=.-.++.-........-......+.|..+++.++ .+..|
T Consensus 249 ~~~--~~~~~~--~~~~l~~v~~~~~~~~~~~G~~G~v~~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G 323 (334)
T PRK13684 249 SKP--IIPEIT--NGYGYLDLAYRTPGEIWAGGGNGTLLVSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRG 323 (334)
T ss_pred ccc--cCCccc--cccceeeEEEcCCCCEEEEcCCCeEEEeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECCCc
Confidence 111 111000 1134688999999998888888866542223333333221111134677888887777655 55688
Q ss_pred eEEEEEc
Q 001477 1040 AIGVFDA 1046 (1071)
Q Consensus 1040 ~i~vwd~ 1046 (1071)
.|..|+-
T Consensus 324 ~il~~~~ 330 (334)
T PRK13684 324 VLLRYVG 330 (334)
T ss_pred eEEEecC
Confidence 8887753
No 401
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.20 E-value=0.052 Score=63.74 Aligned_cols=105 Identities=17% Similarity=0.188 Sum_probs=78.0
Q ss_pred CCCEEEEEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccCCceeEEecCCCC
Q 001477 419 DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEA 498 (1071)
Q Consensus 419 d~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~ 498 (1071)
.+..++.|+..|.+-..|+.++-. ....-..-.++|++++|+.+|. .++.|-.+|.|.+||+..++.++.+..|..
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~--~~~~ne~v~~~Vtsvafn~dg~--~l~~G~~~G~V~v~D~~~~k~l~~i~e~~a 173 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLG--PLHQNERVQGPVTSVAFNQDGS--LLLAGLGDGHVTVWDMHRAKILKVITEHGA 173 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccc--hhhcCCccCCcceeeEecCCCc--eeccccCCCcEEEEEccCCcceeeeeecCC
Confidence 456789999999999988876421 1111112456999999999999 889999999999999999999999888888
Q ss_pred CeEEEEeccc-CCccEEEEEecCCeEEEEEcC
Q 001477 499 PVYSVCPHHK-ESIQFIFSTAIDGKIKAWLYD 529 (1071)
Q Consensus 499 ~v~~i~~~~~-~~~~~l~s~~~d~~i~vwd~~ 529 (1071)
++.++-+... +++..++++...|. +|.+.
T Consensus 174 p~t~vi~v~~t~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 174 PVTGVIFVGRTSQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred ccceEEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence 8777654432 23356777777776 56543
No 402
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.17 E-value=0.015 Score=56.00 Aligned_cols=105 Identities=17% Similarity=0.206 Sum_probs=72.7
Q ss_pred CcEEEEEe-CCeEEEEECCCC-eEEEEEeCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEccCCeEEEEecCcC-CCee
Q 001477 852 DSYVMSAS-GGKVSLFNMMTF-KVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQ-NRIT 928 (1071)
Q Consensus 852 ~~~la~~~-dg~i~vwd~~~~-~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~-~~v~ 928 (1071)
+.-+++|. +|.|.+|...-. .....+..-...|.++.-.-+++.+..++..||.|+.|++.-++.+.....|. .++.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e 149 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE 149 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence 34566666 999999987621 11111122222333333333356688999999999999999999888888888 6666
Q ss_pred EEEEcCCCCEEEEE--eCCCcEEEEECCCC
Q 001477 929 GLAFSPTLNALVSS--GADAQLCMWSIDKW 956 (1071)
Q Consensus 929 ~l~~s~d~~~l~s~--~~d~~v~vWd~~~~ 956 (1071)
.+..+..+.+++++ |.|..++.|+++.-
T Consensus 150 ~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 150 ELIVVGSDEFLKIADTSHDRVLKKWNVEKI 179 (238)
T ss_pred eeEEecCCceEEeeccccchhhhhcchhhh
Confidence 77777777788887 78888888888763
No 403
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.15 E-value=1.8 Score=43.95 Aligned_cols=188 Identities=9% Similarity=0.097 Sum_probs=110.8
Q ss_pred CCCeEEEEEecCCcEEEEEe-CC--eEEEEECCCCeEEEEEeCCCC-CeEEEEEcCCCCCEEEEEeCCCeEEEEEccCCe
Q 001477 840 EESAACIALSKNDSYVMSAS-GG--KVSLFNMMTFKVMTMFMSPPP-AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE 915 (1071)
Q Consensus 840 ~~~v~~v~~s~d~~~la~~~-dg--~i~vwd~~~~~~~~~~~~~~~-~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~ 915 (1071)
......+.|..+|.++-+.+ -| .|+.+|+.+++......-... ---.++... +++..-.-.++...+||..+-+
T Consensus 44 ~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~--d~l~qLTWk~~~~f~yd~~tl~ 121 (264)
T PF05096_consen 44 TAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG--DKLYQLTWKEGTGFVYDPNTLK 121 (264)
T ss_dssp T-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET--TEEEEEESSSSEEEEEETTTTE
T ss_pred cccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC--CEEEEEEecCCeEEEEccccce
Confidence 34456788878888888776 44 699999999998776554332 223455553 4566667789999999999999
Q ss_pred EEEEecCcCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeecCCCCCCCCCCCceEEEEccCCCEEEEE-EC
Q 001477 916 VKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HE 994 (1071)
Q Consensus 916 ~~~~l~~h~~~v~~l~~s~d~~~l~s~~~d~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d 994 (1071)
.+.++.- .+.=+.|+ .|++.|+.......+.++|.++.+..+...+...... ...++.+.+. +|...|=. ..
T Consensus 122 ~~~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~p---v~~LNELE~i-~G~IyANVW~t 194 (264)
T PF05096_consen 122 KIGTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRP---VSNLNELEYI-NGKIYANVWQT 194 (264)
T ss_dssp EEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE------EEEEEEE-TTEEEEEETTS
T ss_pred EEEEEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEE---CCCcEeEEEE-cCEEEEEeCCC
Confidence 9988873 35567887 4666666666677899999988876655444322111 1445666665 45443322 34
Q ss_pred CeEEEEeC-CCCceeecC------------CCCCCCCCeeEEEEecCCcEEEEEe
Q 001477 995 SQISVYDS-KLECSRSWS------------PKDALPAPISSAIYSCDGLLVYAGF 1036 (1071)
Q Consensus 995 ~~i~vwd~-~~~~~~~~~------------~~~~h~~~v~~~~~s~dg~~l~t~~ 1036 (1071)
..|...|. ++.....+. ...+-..-...+|+.|..+.++..+
T Consensus 195 d~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 195 DRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp SEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred CeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 45555555 333322210 0011145677899988776655444
No 404
>PHA02713 hypothetical protein; Provisional
Probab=96.13 E-value=0.29 Score=57.32 Aligned_cols=189 Identities=11% Similarity=0.080 Sum_probs=101.2
Q ss_pred cCCcEEEEEe-C------CeEEEEECCCCeEEEEEeCCCCCe-EEEEEcCCCCCEEEEEeCCC-----eEEEEEccCCe-
Q 001477 850 KNDSYVMSAS-G------GKVSLFNMMTFKVMTMFMSPPPAA-TFLAFHPQDNNIIAIGMEDS-----SVQIYNVRVDE- 915 (1071)
Q Consensus 850 ~d~~~la~~~-d------g~i~vwd~~~~~~~~~~~~~~~~i-~~l~~sp~~~~~la~g~~dg-----~v~vwd~~~~~- 915 (1071)
-++...++|+ + ..+..||..+.+-...-.-+...- .+++.. ++++.+.|+.++ +|..||..+.+
T Consensus 302 l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~--~g~IYviGG~~~~~~~~sve~Ydp~~~~W 379 (557)
T PHA02713 302 VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI--DDTIYAIGGQNGTNVERTIECYTMGDDKW 379 (557)
T ss_pred ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE--CCEEEEECCcCCCCCCceEEEEECCCCeE
Confidence 4677777776 3 247788887654321111111111 122222 678888888764 48899987653
Q ss_pred -EEEEecCcCCCeeEEEEcCCCCEEEEEeCCC-----------------------cEEEEECCCCceeeeeeecCCCCCC
Q 001477 916 -VKTKLKGHQNRITGLAFSPTLNALVSSGADA-----------------------QLCMWSIDKWEKLKSRFIQAPAGRQ 971 (1071)
Q Consensus 916 -~~~~l~~h~~~v~~l~~s~d~~~l~s~~~d~-----------------------~v~vWd~~~~~~~~~~~~~~~~~~~ 971 (1071)
.+..+.........++ -+|++.+.||.++ .+..||..+.+......+.. +
T Consensus 380 ~~~~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~--~-- 453 (557)
T PHA02713 380 KMLPDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWT--G-- 453 (557)
T ss_pred EECCCCCcccccccEEE--ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCc--c--
Confidence 2223322211122222 3688888887653 46778877755432211111 1
Q ss_pred CCCCCceEEEEccCCCEEEEEE-C------CeEEEEeCCC-CceeecCCCCCCCCCeeEEEEecCCcEEEEEeCCC--eE
Q 001477 972 SPLVGETKVQFHNDQTHLLVVH-E------SQISVYDSKL-ECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDG--AI 1041 (1071)
Q Consensus 972 ~~~~~v~~~~~s~dg~~l~~~~-d------~~i~vwd~~~-~~~~~~~~~~~h~~~v~~~~~s~dg~~l~t~~~Dg--~i 1041 (1071)
.....+..-+|+..++|+ + ..+..||... +.-...............+ .-+|+..++|+.|| ++
T Consensus 454 ----r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~--~~~~~iyv~Gg~~~~~~~ 527 (557)
T PHA02713 454 ----TIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTI--LHDNTIMMLHCYESYMLQ 527 (557)
T ss_pred ----cccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeE--EECCEEEEEeeecceeeh
Confidence 111223344566666653 2 2467888854 3433332222112222222 33788889999998 78
Q ss_pred EEEEcCCCeEE
Q 001477 1042 GVFDAETLRFR 1052 (1071)
Q Consensus 1042 ~vwd~~~~~~~ 1052 (1071)
..||..+.+.-
T Consensus 528 e~yd~~~~~W~ 538 (557)
T PHA02713 528 DTFNVYTYEWN 538 (557)
T ss_pred hhcCccccccc
Confidence 88999888754
No 405
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.07 E-value=0.016 Score=40.99 Aligned_cols=33 Identities=21% Similarity=0.509 Sum_probs=29.5
Q ss_pred CCCeEEEEeecCCCeEEEEEcCCCeEEEEecCCCc
Q 001477 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRE 380 (1071)
Q Consensus 346 ~~~V~~~~fsp~g~~lla~gs~dg~i~iwd~~~~~ 380 (1071)
...|.+++|+|..+ ++|.|+.+|.|.|+.+ +++
T Consensus 11 ~~~v~~~~w~P~md-LiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 11 PSRVSCMSWCPTMD-LIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCcEEEEEECCCCC-EEEEEECCCeEEEEEC-CCc
Confidence 45799999999998 8999999999999998 454
No 406
>cd08044 TAF5_NTD2 TAF5_NTD2 is the second conserved N-terminal region of TATA Binding Protein (TBP) Associated Factor 5 (TAF5), involved in forming Transcription Factor IID (TFIID). The TATA Binding Protein (TBP) Associated Factor 5 (TAF5) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TAF5 contains three domains, two conserved sequence motifs at the N-terminal and one at the C-terminal region. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the preinitiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. In yeast and human cells, TAFs have been found as components of other complexes besides TFIID. TAF5 may play a major role in forming TFIID and its related complexes. TAFs from various
Probab=96.05 E-value=0.018 Score=52.51 Aligned_cols=82 Identities=17% Similarity=0.291 Sum_probs=62.6
Q ss_pred chhhHHHHHHHHHHHHHHhcccCHHHHHHHHHhhcccccccCHHHHHHHHHhhcccCccchhhhccCCC-------chhH
Q 001477 67 RYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLTLDNFRQNEQLSKYGD-------TKSA 139 (1071)
Q Consensus 67 ~~~~~~~~~i~~~~~lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~-------~~~~ 139 (1071)
++. .++|+++.+.||||+..|...+|..|+++.-..+...+.++++.|+.+....++.+++....+++ ++.+
T Consensus 25 EL~-~lLyPiFvh~yL~lv~~~~~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~p~~l~~n~~~~~~r~~Ky~i~ms~~s 103 (133)
T cd08044 25 ELS-QLLYPIFVHSYLDLVASGHLEEAKSFFERFSGDFEDSHSEDIKKLSSITTPEHLKENELAKLFRSNKYVIRMSRDA 103 (133)
T ss_pred HHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhHhhHHHHHHHHHHHHccCCHHHHhhhHHHHHHHhCCEEEEECHHH
Confidence 444 49999999999999999999999999998766665567788999999988888877776655544 2444
Q ss_pred HHHHHHHHHh
Q 001477 140 RNIMLVELKK 149 (1071)
Q Consensus 140 R~~l~~~l~~ 149 (1071)
-..|+.-|++
T Consensus 104 ~~lL~~~L~~ 113 (133)
T cd08044 104 YSLLLRFLES 113 (133)
T ss_pred HHHHHHHHHH
Confidence 4444444444
No 407
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.03 E-value=1.1 Score=45.54 Aligned_cols=202 Identities=14% Similarity=0.157 Sum_probs=119.6
Q ss_pred CCCceEEEEEecccchhhhccccceeEEEecccccCCCCCccceeecceeccCCCCCccccccCCCCCCCCCeEEEEEec
Q 001477 771 AASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK 850 (1071)
Q Consensus 771 ~~~~v~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~v~~s~ 850 (1071)
-...+.++.|+|+.+.|++..+...-.|+= ..+|.++. ..++.+ -.....+++..
T Consensus 84 ~~~nvS~LTynp~~rtLFav~n~p~~iVEl------t~~Gdlir---------------tiPL~g----~~DpE~Ieyig 138 (316)
T COG3204 84 ETANVSSLTYNPDTRTLFAVTNKPAAIVEL------TKEGDLIR---------------TIPLTG----FSDPETIEYIG 138 (316)
T ss_pred ccccccceeeCCCcceEEEecCCCceEEEE------ecCCceEE---------------Eecccc----cCChhHeEEec
Confidence 345599999999999999988876655541 12222222 223444 34556778888
Q ss_pred CCcEEEEEe-CCeEEEEECCCCeEEEE-------Ee--CC-CCCeEEEEEcCCCCCEEEEEeCCCeEEEEEccCCe---E
Q 001477 851 NDSYVMSAS-GGKVSLFNMMTFKVMTM-------FM--SP-PPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE---V 916 (1071)
Q Consensus 851 d~~~la~~~-dg~i~vwd~~~~~~~~~-------~~--~~-~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~---~ 916 (1071)
+|+++++-- ++.+.++.+........ +. .+ +...-.++|+| ..+.|..+-+-.=+.||.+..+. .
T Consensus 139 ~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~-~~~~l~~aKEr~P~~I~~~~~~~~~l~ 217 (316)
T COG3204 139 GNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDP-VDHRLFVAKERNPIGIFEVTQSPSSLS 217 (316)
T ss_pred CCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCC-CCceEEEEEccCCcEEEEEecCCcccc
Confidence 888888776 78888887765422211 11 12 44677899999 55566666666667777665332 1
Q ss_pred EEEecCc-------CCCeeEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeeeeeecC-CCCCCCCCCCceEEEEccCCC
Q 001477 917 KTKLKGH-------QNRITGLAFSP-TLNALVSSGADAQLCMWSIDKWEKLKSRFIQA-PAGRQSPLVGETKVQFHNDQT 987 (1071)
Q Consensus 917 ~~~l~~h-------~~~v~~l~~s~-d~~~l~s~~~d~~v~vWd~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~s~dg~ 987 (1071)
+.....+ -..|.++.|.+ .+.+|+-+.+++.+.--|....- +....+.. ..+-.......-.++..++|.
T Consensus 218 ~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~-~~~lsL~~g~~gL~~dipqaEGiamDd~g~ 296 (316)
T COG3204 218 VHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEV-IELLSLTKGNHGLSSDIPQAEGIAMDDDGN 296 (316)
T ss_pred cccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCe-eeeEEeccCCCCCcccCCCcceeEECCCCC
Confidence 1111112 12466777876 45677777778877777776533 32222221 122221223456788888888
Q ss_pred EEEEEECCeEEE
Q 001477 988 HLLVVHESQISV 999 (1071)
Q Consensus 988 ~l~~~~d~~i~v 999 (1071)
..+++.-+-.+.
T Consensus 297 lYIvSEPnlfy~ 308 (316)
T COG3204 297 LYIVSEPNLFYR 308 (316)
T ss_pred EEEEecCCccee
Confidence 777765444433
No 408
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.01 E-value=2 Score=43.72 Aligned_cols=169 Identities=12% Similarity=0.105 Sum_probs=106.9
Q ss_pred ccCCCCeeEEEECCCCCEEEEEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEc
Q 001477 405 NDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDV 484 (1071)
Q Consensus 405 ~~h~~~v~~~~~spd~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~ 484 (1071)
.+-...|.++.|+|+.+.|++..+.+.-.||=-..|+.++.. .+.+- ..-..+.+..+|. +.++--.++.+.++.+
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~Gdlirti-PL~g~-~DpE~Ieyig~n~--fvi~dER~~~l~~~~v 157 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTI-PLTGF-SDPETIEYIGGNQ--FVIVDERDRALYLFTV 157 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEe-ccccc-CChhHeEEecCCE--EEEEehhcceEEEEEE
Confidence 345555999999999999998888887777777777766533 34342 2345677877777 6777778888888877
Q ss_pred cCCceeEE-------e---cCCCCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCceeEEe---cCC-------CCcE
Q 001477 485 VAGRKQYT-------F---EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY---DAP-------GNWC 544 (1071)
Q Consensus 485 ~~~~~~~~-------~---~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~---~~~-------~~~i 544 (1071)
..+..+.. + ...+.....++|.|.. ..|+.+-+-+-+.+|.+......... ..+ -..+
T Consensus 158 d~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~--~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~Dv 235 (316)
T COG3204 158 DADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVD--HRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDV 235 (316)
T ss_pred cCCccEEeccceEEeccccCCCCcCceeeecCCCC--ceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecc
Confidence 65532211 1 1125567889999865 67777777777777765533211111 111 2256
Q ss_pred EEEEEccCCCEEEEeccCCCCCCeEEEEeCCCCceeEEe
Q 001477 545 TMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTY 583 (1071)
Q Consensus 545 ~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~ 583 (1071)
.++.|.+....+++-+. +.+.+.-.|.. |.++..+
T Consensus 236 Sgl~~~~~~~~LLVLS~---ESr~l~Evd~~-G~~~~~l 270 (316)
T COG3204 236 SGLEFNAITNSLLVLSD---ESRRLLEVDLS-GEVIELL 270 (316)
T ss_pred ccceecCCCCcEEEEec---CCceEEEEecC-CCeeeeE
Confidence 78888876665555442 36667667755 5544443
No 409
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.97 E-value=0.15 Score=55.19 Aligned_cols=141 Identities=12% Similarity=0.140 Sum_probs=96.6
Q ss_pred ceEEEEEeCCCcEEEEEccCCceeEEecCCCCCeEEEEecccCCccEE-----EEEecCCeEEEEEcCCCce-eEEe-cC
Q 001477 467 QLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFI-----FSTAIDGKIKAWLYDYLGS-RVDY-DA 539 (1071)
Q Consensus 467 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l-----~s~~~d~~i~vwd~~~~~~-~~~~-~~ 539 (1071)
.+++.++.....++-.|++.|+.+..+.-+.. |+-+.+.|+..+..+ +.|-.|+.|.-||.+-... .+.. ..
T Consensus 346 nlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~ 424 (644)
T KOG2395|consen 346 NLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQS 424 (644)
T ss_pred ceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeec
Confidence 34667777788899999999999999887766 777777776655444 4456788899999885544 2211 11
Q ss_pred ----CCCcEEEEEEccCCCEEEEeccCCCCCCeEEEEeCCCCce-eEEeecccccceeEEEEeCCCCEEEEEeCCCcEEE
Q 001477 540 ----PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI-KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKF 614 (1071)
Q Consensus 540 ----~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 614 (1071)
......|.+-..+| ++++++. +|-|++||- .+.. ...+++... +|..+..+.+|++|++.+. ..+.+
T Consensus 425 kqy~~k~nFsc~aTT~sG-~IvvgS~----~GdIRLYdr-i~~~AKTAlPgLG~-~I~hVdvtadGKwil~Tc~-tyLlL 496 (644)
T KOG2395|consen 425 KQYSTKNNFSCFATTESG-YIVVGSL----KGDIRLYDR-IGRRAKTALPGLGD-AIKHVDVTADGKWILATCK-TYLLL 496 (644)
T ss_pred cccccccccceeeecCCc-eEEEeec----CCcEEeehh-hhhhhhhcccccCC-ceeeEEeeccCcEEEEecc-cEEEE
Confidence 12345666665555 5666664 666999997 4443 344566555 8999999999999988764 34444
Q ss_pred Ee
Q 001477 615 WD 616 (1071)
Q Consensus 615 wd 616 (1071)
-+
T Consensus 497 i~ 498 (644)
T KOG2395|consen 497 ID 498 (644)
T ss_pred EE
Confidence 44
No 410
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=95.93 E-value=3.3 Score=45.05 Aligned_cols=68 Identities=21% Similarity=0.186 Sum_probs=39.6
Q ss_pred ceeEEEEeC-------CCCEEEEEeCCCcEEEEeCCCCceeEEE-ecCCCC-CCcceEEEcCCCCEEEEEeCCCcEE
Q 001477 590 SLGVVQFDT-------TRNRFLAAGDEFQIKFWDMDNMNMLTTV-DADGGL-PASPRLRFNKEGSLLAVTTSDNGIK 657 (1071)
Q Consensus 590 ~v~~~~~~~-------~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~-~~v~~~~~s~~~~~l~~~~~dg~v~ 657 (1071)
.+..+.|.. .|.++++.-..+.|....++.+..+... ..-... ..+..+++.|||.+.++-..+|.|.
T Consensus 254 ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 254 APTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp -EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred ccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 455555653 3345555555677887777654333222 211222 2678999999999888877788764
No 411
>PHA02713 hypothetical protein; Provisional
Probab=95.75 E-value=0.56 Score=54.99 Aligned_cols=190 Identities=7% Similarity=0.028 Sum_probs=93.2
Q ss_pred CCCceEEEEEeCC------CcEEEEEccCCceeE--EecCCCCCeEEEEecccCCccEEEEEecCC-----eEEEEEcCC
Q 001477 464 PNKQLCIVTCGDD------KMIKVWDVVAGRKQY--TFEGHEAPVYSVCPHHKESIQFIFSTAIDG-----KIKAWLYDY 530 (1071)
Q Consensus 464 d~~~~~l~s~~~d------~~i~iwd~~~~~~~~--~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~-----~i~vwd~~~ 530 (1071)
++. +++.||.+ ..+..||+.+..... .+....... +++.. +|.+.+.||.++ .+..||..+
T Consensus 303 ~~~--IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~-~~~~~---~g~IYviGG~~~~~~~~sve~Ydp~~ 376 (557)
T PHA02713 303 DNE--IIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF-SLAVI---DDTIYAIGGQNGTNVERTIECYTMGD 376 (557)
T ss_pred CCE--EEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce-eEEEE---CCEEEEECCcCCCCCCceEEEEECCC
Confidence 454 66777753 347788887765321 111111111 22221 336777787654 477888776
Q ss_pred CceeEEecCC--CCcEEEEEEccCCCEEEEeccCCCC-------------------CCeEEEEeCCCCceeEEeeccccc
Q 001477 531 LGSRVDYDAP--GNWCTMMAYSADGTRLFSCGTSKEG-------------------ESHLVEWNESEGAIKRTYSGFRKR 589 (1071)
Q Consensus 531 ~~~~~~~~~~--~~~i~~~~~s~~~~~l~~~~~~~d~-------------------~~~i~iwd~~~~~~~~~~~~~~~~ 589 (1071)
..-...-... ......+ .-+|+..+.|+.+... -..+..||..+.+-...-.-...
T Consensus 377 ~~W~~~~~mp~~r~~~~~~--~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~- 453 (557)
T PHA02713 377 DKWKMLPDMPIALSSYGMC--VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTG- 453 (557)
T ss_pred CeEEECCCCCcccccccEE--EECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcc-
Confidence 5433211111 1111122 2356666666643210 23578888887654322111111
Q ss_pred ceeEEEEeCCCCEEEEEeCC------CcEEEEeCCC-CceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCC--cEEEEE
Q 001477 590 SLGVVQFDTTRNRFLAAGDE------FQIKFWDMDN-MNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDN--GIKILA 660 (1071)
Q Consensus 590 ~v~~~~~~~~~~~l~~~~~d------g~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg--~v~iw~ 660 (1071)
........-+++..+.||.+ ..+..||..+ .+-...-...........++ -+|...++|+.+| .+..||
T Consensus 454 r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~--~~~~iyv~Gg~~~~~~~e~yd 531 (557)
T PHA02713 454 TIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTIL--HDNTIMMLHCYESYMLQDTFN 531 (557)
T ss_pred cccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEE--ECCEEEEEeeecceeehhhcC
Confidence 11111223345666667643 2467899887 44322222211111122222 2678888888888 677777
Q ss_pred cCCh
Q 001477 661 NSDG 664 (1071)
Q Consensus 661 ~~~~ 664 (1071)
..+.
T Consensus 532 ~~~~ 535 (557)
T PHA02713 532 VYTY 535 (557)
T ss_pred cccc
Confidence 7765
No 412
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.68 E-value=0.041 Score=39.01 Aligned_cols=32 Identities=19% Similarity=0.284 Sum_probs=29.0
Q ss_pred CCCCeeEEEECCCCCEEEEEeCCCeEEEEEec
Q 001477 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYN 438 (1071)
Q Consensus 407 h~~~v~~~~~spd~~~la~~~~dg~i~iwd~~ 438 (1071)
....|.+++|+|..++||.|+.+|.|.+|.++
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 34569999999999999999999999999994
No 413
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.65 E-value=3 Score=42.46 Aligned_cols=196 Identities=9% Similarity=0.051 Sum_probs=113.5
Q ss_pred CCCceEEEEEecccchhhhccccceeEEEecccccCCCCCccceeecceeccCCCCCccc-cccCCCCCCCCCeEEEEEe
Q 001477 771 AASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMT-NDINESKPTEESAACIALS 849 (1071)
Q Consensus 771 ~~~~v~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~h~~~~v~~v~~s 849 (1071)
.......+.|..+|..+-+.+.-|.=. ++.+++.+|+... ..++. ..--..++..
T Consensus 43 ~~aFTQGL~~~~~g~LyESTG~yG~S~--------------------l~~~d~~tg~~~~~~~l~~----~~FgEGit~~ 98 (264)
T PF05096_consen 43 PTAFTQGLEFLDDGTLYESTGLYGQSS--------------------LRKVDLETGKVLQSVPLPP----RYFGEGITIL 98 (264)
T ss_dssp TT-EEEEEEEEETTEEEEEECSTTEEE--------------------EEEEETTTSSEEEEEE-TT----T--EEEEEEE
T ss_pred CcccCccEEecCCCEEEEeCCCCCcEE--------------------EEEEECCCCcEEEEEECCc----cccceeEEEE
Confidence 345567788888887776766654322 2344556665442 22322 3334455655
Q ss_pred cCCcEEEEEeCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEccCCeEEEEecCcC-----
Q 001477 850 KNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQ----- 924 (1071)
Q Consensus 850 ~d~~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~----- 924 (1071)
.|.-+..+--++...+||..+.+.+.++.-. +.-..++. +++.|+.......++++|..+-+....+.-..
T Consensus 99 ~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y~-~EGWGLt~---dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv 174 (264)
T PF05096_consen 99 GDKLYQLTWKEGTGFVYDPNTLKKIGTFPYP-GEGWGLTS---DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPV 174 (264)
T ss_dssp TTEEEEEESSSSEEEEEETTTTEEEEEEE-S-SS--EEEE---CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE-
T ss_pred CCEEEEEEecCCeEEEEccccceEEEEEecC-CcceEEEc---CCCEEEEECCccceEEECCcccceEEEEEEEECCEEC
Confidence 5544445555899999999999999988743 45566663 45555555556689999988876666554322
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeecCCC-------CCCCCCCCceEEEEccCCCEEEEEECC
Q 001477 925 NRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPA-------GRQSPLVGETKVQFHNDQTHLLVVHES 995 (1071)
Q Consensus 925 ~~v~~l~~s~d~~~l~s~~~d~~v~vWd~~~~~~~~~~~~~~~~-------~~~~~~~~v~~~~~s~dg~~l~~~~d~ 995 (1071)
..+.-|.|. +|...|=.-....|..-|..+|+.....-+.... .......-.+.+|+.|.+..|.+....
T Consensus 175 ~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~ 251 (264)
T PF05096_consen 175 SNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKL 251 (264)
T ss_dssp --EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT
T ss_pred CCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCC
Confidence 235556665 6777776667777888899998877654332111 111111346899999887766664433
No 414
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.62 E-value=3.2 Score=50.13 Aligned_cols=204 Identities=12% Similarity=0.070 Sum_probs=116.5
Q ss_pred CCEEEEEeCCCeEEEEEecCCCccceeeEeecc-c-----CCEEEEEEec----------------CCCceEEEEEeCCC
Q 001477 420 GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAH-V-----GGVNDIAFAH----------------PNKQLCIVTCGDDK 477 (1071)
Q Consensus 420 ~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h-~-----~~v~~~~~s~----------------d~~~~~l~s~~~d~ 477 (1071)
+..|..++.++.|.-.|..+|+.+-.... ... . ...+.+++.. .+. .++.++.|+
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~-~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~--rV~~~T~Dg 270 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDP-KLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCAR--RIILPTSDA 270 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcC-CCCcccccccccccceEEecCCcccccccccccccccCC--EEEEecCCC
Confidence 45566666777777777777765432110 000 0 0012222211 233 577788899
Q ss_pred cEEEEEccCCceeEEecCCCCCeE-------------EEEecccCCccEEEEEec----------CCeEEEEEcCCCcee
Q 001477 478 MIKVWDVVAGRKQYTFEGHEAPVY-------------SVCPHHKESIQFIFSTAI----------DGKIKAWLYDYLGSR 534 (1071)
Q Consensus 478 ~i~iwd~~~~~~~~~~~~h~~~v~-------------~i~~~~~~~~~~l~s~~~----------d~~i~vwd~~~~~~~ 534 (1071)
.+.-.|.++|+.+..+. ..+.|. .+.-.|--.+..++.|+. +|.|+-+|.++++..
T Consensus 271 ~LiALDA~TGk~~W~fg-~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~ 349 (764)
T TIGR03074 271 RLIALDADTGKLCEDFG-NNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALV 349 (764)
T ss_pred eEEEEECCCCCEEEEec-CCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEe
Confidence 99999999999987763 222221 011111111245666643 688999999999887
Q ss_pred EEecCC---------CC--------cE-EEEEEccCCCEEEEeccC--------------CCCCCeEEEEeCCCCceeEE
Q 001477 535 VDYDAP---------GN--------WC-TMMAYSADGTRLFSCGTS--------------KEGESHLVEWNESEGAIKRT 582 (1071)
Q Consensus 535 ~~~~~~---------~~--------~i-~~~~~s~~~~~l~~~~~~--------------~d~~~~i~iwd~~~~~~~~~ 582 (1071)
..+... .+ .+ ...++.++...++....+ +.-.+.|.-.|.++|+....
T Consensus 350 W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~ 429 (764)
T TIGR03074 350 WAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWV 429 (764)
T ss_pred eEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEE
Confidence 765421 00 01 234455555554442210 11235677888899998887
Q ss_pred eec-cccc-------ceeEEEEeC-CCC---EEEEEeCCCcEEEEeCCCCceeEEEe
Q 001477 583 YSG-FRKR-------SLGVVQFDT-TRN---RFLAAGDEFQIKFWDMDNMNMLTTVD 627 (1071)
Q Consensus 583 ~~~-~~~~-------~v~~~~~~~-~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~ 627 (1071)
++. |++. ...-+.+.. +|+ .++.++.+|.+++.|.++|+++...+
T Consensus 430 ~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 430 FQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE 486 (764)
T ss_pred ecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence 765 2210 011122322 453 67888899999999999999887654
No 415
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.42 E-value=0.042 Score=64.49 Aligned_cols=101 Identities=18% Similarity=0.320 Sum_probs=74.4
Q ss_pred CCcEEEEEe-CCeEEEEECCCC-eEEEEEeCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEccCCeEEEEecCcCCCee
Q 001477 851 NDSYVMSAS-GGKVSLFNMMTF-KVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRIT 928 (1071)
Q Consensus 851 d~~~la~~~-dg~i~vwd~~~~-~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~~~v~ 928 (1071)
-+..++.|+ .|.+-..|+.+. .....=..-.++|++++|+. +|++++.|-.+|.|.+||...++.++.+..|..+.+
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~-dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t 176 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQ-DGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVT 176 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecC-CCceeccccCCCcEEEEEccCCcceeeeeecCCccc
Confidence 455777777 577888887542 11112122346899999999 999999999999999999999999998887777766
Q ss_pred EEEE---cCCCCEEEEEeCCCcEEEEECC
Q 001477 929 GLAF---SPTLNALVSSGADAQLCMWSID 954 (1071)
Q Consensus 929 ~l~~---s~d~~~l~s~~~d~~v~vWd~~ 954 (1071)
++-+ ..++..+.++..-|. +|.+.
T Consensus 177 ~vi~v~~t~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 177 GVIFVGRTSQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred eEEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence 6544 446667888877775 66654
No 416
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.41 E-value=2 Score=41.87 Aligned_cols=138 Identities=12% Similarity=0.061 Sum_probs=78.0
Q ss_pred cCCEEEEEEecCCCceEEEEEeCCCcEEEEEccCCceeEEecCCC--------CCeEEEEecccCCccEEEEEecCCeEE
Q 001477 453 VGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHE--------APVYSVCPHHKESIQFIFSTAIDGKIK 524 (1071)
Q Consensus 453 ~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~--------~~v~~i~~~~~~~~~~l~s~~~d~~i~ 524 (1071)
..+.++-..+|+|+ +++-.-.|-. -......|..-.-+.+|+ +--+.++|+.+. ..+.++-+.+-.|.
T Consensus 108 knR~NDgkvdP~Gr--yy~GtMad~~-~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~-K~fY~iDsln~~V~ 183 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGR--YYGGTMADFG-DDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDA-KKFYYIDSLNYEVD 183 (310)
T ss_pred hcccccCccCCCCc--eeeeeecccc-ccccccccEEEEeccCCCceeeehhccCCccccccccC-cEEEEEccCceEEe
Confidence 34566777889998 4322111111 011211222222222332 333566777443 24556667788888
Q ss_pred EEEcCC--C-----ceeEEecC----CCCcEEEEEEccCCCEEEEeccCCCCCCeEEEEeCCCCceeEEeecccccceeE
Q 001477 525 AWLYDY--L-----GSRVDYDA----PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGV 593 (1071)
Q Consensus 525 vwd~~~--~-----~~~~~~~~----~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~v~~ 593 (1071)
-||.+- + ..+..+.. .....-.++...+|+..+++-. .++|...|..+|+.+.++.-... .+++
T Consensus 184 a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~n----g~~V~~~dp~tGK~L~eiklPt~-qits 258 (310)
T KOG4499|consen 184 AYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFN----GGTVQKVDPTTGKILLEIKLPTP-QITS 258 (310)
T ss_pred eeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEec----CcEEEEECCCCCcEEEEEEcCCC-ceEE
Confidence 888442 2 12222221 1112224455667777776653 77899999999999999988766 8999
Q ss_pred EEEeCC
Q 001477 594 VQFDTT 599 (1071)
Q Consensus 594 ~~~~~~ 599 (1071)
++|...
T Consensus 259 ccFgGk 264 (310)
T KOG4499|consen 259 CCFGGK 264 (310)
T ss_pred EEecCC
Confidence 999754
No 417
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=95.31 E-value=4.1 Score=41.87 Aligned_cols=213 Identities=14% Similarity=0.149 Sum_probs=128.0
Q ss_pred CeEEEEEecCCcEEEEEe-CCeEEEEECC-------CCeEEEEEeC-----CCCCeEEEEEcCCCCCE------------
Q 001477 842 SAACIALSKNDSYVMSAS-GGKVSLFNMM-------TFKVMTMFMS-----PPPAATFLAFHPQDNNI------------ 896 (1071)
Q Consensus 842 ~v~~v~~s~d~~~la~~~-dg~i~vwd~~-------~~~~~~~~~~-----~~~~i~~l~~sp~~~~~------------ 896 (1071)
.-..|+++|.+.+-++.. -+...+||.. ...++.++.. .....+.+.|+. ...+
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~-~~~F~vt~~g~~~~a~ 102 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNG-SDTFVVSGEGITGPSR 102 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeC-CCceEEcCCCccccee
Confidence 356899999887776665 6889999986 1233444442 123567777774 2222
Q ss_pred EEEEeCCCeEEEEEccCCeE-----EEEec-CcCCCe-eEEEEcCC--CCEEEEEe-CCCcEEEEECCCCceeeeeeec-
Q 001477 897 IAIGMEDSSVQIYNVRVDEV-----KTKLK-GHQNRI-TGLAFSPT--LNALVSSG-ADAQLCMWSIDKWEKLKSRFIQ- 965 (1071)
Q Consensus 897 la~g~~dg~v~vwd~~~~~~-----~~~l~-~h~~~v-~~l~~s~d--~~~l~s~~-~d~~v~vWd~~~~~~~~~~~~~- 965 (1071)
++.+++||+|.-|.-.-+.. ...+. +..+.| ..+++... +.+|..+. ..++|.|+|-.-.+....-...
T Consensus 103 Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~D 182 (336)
T TIGR03118 103 FLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFID 182 (336)
T ss_pred EEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccC
Confidence 46678999999998532211 12222 112333 45565533 45555444 6789999986553311000000
Q ss_pred --CCCCCCCCCCCceEEEEccCCCEEEE-E-------------ECCeEEEEeCCCCceeecCCCCCCCCCeeEEEEec--
Q 001477 966 --APAGRQSPLVGETKVQFHNDQTHLLV-V-------------HESQISVYDSKLECSRSWSPKDALPAPISSAIYSC-- 1027 (1071)
Q Consensus 966 --~~~~~~~~~~~v~~~~~s~dg~~l~~-~-------------~d~~i~vwd~~~~~~~~~~~~~~h~~~v~~~~~s~-- 1027 (1071)
.+.+..+ ..+.-- .++++++ + .-|.|-+||.++..++.+.. .+.-...+.|+..|
T Consensus 183 P~iPagyAP-----FnIqni-g~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l~~r~as-~g~LNaPWG~a~APa~ 255 (336)
T TIGR03118 183 PALPAGYAP-----FNVQNL-GGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQLLRRVAS-SGRLNAPWGLAIAPES 255 (336)
T ss_pred CCCCCCCCC-----cceEEE-CCeEEEEEEecCCcccccccCCCcceEEEEcCCCcEEEEecc-CCcccCCceeeeChhh
Confidence 0111110 111111 2333333 2 12579999999998887744 34467778888855
Q ss_pred ----CCcEEEEEeCCCeEEEEEcCCCeEEEEeCCCcccC
Q 001477 1028 ----DGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIP 1062 (1071)
Q Consensus 1028 ----dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~ 1062 (1071)
.|.+|+---.||+|..||..+|+.+..+..+.-.|
T Consensus 256 FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~p 294 (336)
T TIGR03118 256 FGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHP 294 (336)
T ss_pred hCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCe
Confidence 67788877789999999999999999987764433
No 418
>PF04494 TFIID_90kDa: WD40 associated region in TFIID subunit; InterPro: IPR007582 This region, possibly a domain is found in subunits of transcription factor TFIID. The function of this region is unknown.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2J4B_D 2J49_A 2NXP_F.
Probab=95.24 E-value=0.022 Score=52.59 Aligned_cols=67 Identities=15% Similarity=0.277 Sum_probs=50.1
Q ss_pred chhhHHHHHHHHHHHHHHhcccCHHHHHHHHHhhcccccccCHHHHHHHHHhhcccCccchhhhccCC
Q 001477 67 RYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLTLDNFRQNEQLSKYG 134 (1071)
Q Consensus 67 ~~~~~~~~~i~~~~~lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~ 134 (1071)
++.. ++|+++.|.||+|+..|...+|..|+.+.-..+.....+++.+|..+....++.+++....++
T Consensus 36 EL~~-lLyPvFvh~YL~Lv~~~~~~~A~~F~~kf~~~~~~~~~~~i~~L~~i~~~~~l~~~~~~~~~r 102 (142)
T PF04494_consen 36 ELSR-LLYPVFVHSYLDLVSKGHPEEAKSFLEKFSPDFEDSHQEDIEKLSSITSPEHLEENELARLFR 102 (142)
T ss_dssp HHGG-GHHHHHHHHHHHHHHTT-HHHHHHHHHHHGGGGHGHGHHHHHHHTT--SHHHHHHSHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHhHHHHHHHHHHHhhCcHHHHhccHHHHHHH
Confidence 4444 999999999999999999999999999877777666777888888777766665555444343
No 419
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=95.20 E-value=6.4 Score=43.57 Aligned_cols=153 Identities=11% Similarity=0.028 Sum_probs=88.3
Q ss_pred eEEEEEcCCCCCEEEEEeCCCeEEEEEccC--CeEEEEecCcCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeee
Q 001477 884 ATFLAFHPQDNNIIAIGMEDSSVQIYNVRV--DEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKS 961 (1071)
Q Consensus 884 i~~l~~sp~~~~~la~g~~dg~v~vwd~~~--~~~~~~l~~h~~~v~~l~~s~d~~~l~s~~~d~~v~vWd~~~~~~~~~ 961 (1071)
...+..++ ++.+++++.....++-||-.. .+.+. . .....++++.|.+++.+++.+ .+|.+ +|....++.-..
T Consensus 241 f~~v~~~~-dG~~~~vg~~G~~~~s~d~G~~~W~~~~-~-~~~~~l~~v~~~~dg~l~l~g-~~G~l-~~S~d~G~~~~~ 315 (398)
T PLN00033 241 FSTVNRSP-DGDYVAVSSRGNFYLTWEPGQPYWQPHN-R-ASARRIQNMGWRADGGLWLLT-RGGGL-YVSKGTGLTEED 315 (398)
T ss_pred eeeEEEcC-CCCEEEEECCccEEEecCCCCcceEEec-C-CCccceeeeeEcCCCCEEEEe-CCceE-EEecCCCCcccc
Confidence 44556777 777777765443333344221 12222 2 234568999999999877654 56654 445444431100
Q ss_pred -eeecCCCCCCCCCCCceEEEEccCCCEEEEEECCeEEEEeCCCCceeecCCCCCCCCCeeEEEEecCCcEEEEEeCCCe
Q 001477 962 -RFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGA 1040 (1071)
Q Consensus 962 -~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~t~~~Dg~ 1040 (1071)
......... ....+..+.|.+++..+++|..|.+....-.++.-........-......+.|.++++-+++ +.+|.
T Consensus 316 ~~f~~~~~~~--~~~~l~~v~~~~d~~~~a~G~~G~v~~s~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~-G~~G~ 392 (398)
T PLN00033 316 FDFEEADIKS--RGFGILDVGYRSKKEAWAAGGSGILLRSTDGGKSWKRDKGADNIAANLYSVKFFDDKKGFVL-GNDGV 392 (398)
T ss_pred cceeecccCC--CCcceEEEEEcCCCcEEEEECCCcEEEeCCCCcceeEccccCCCCcceeEEEEcCCCceEEE-eCCcE
Confidence 001111000 01357899999999999999998877766544443332211222567889999887776664 56888
Q ss_pred EEEE
Q 001477 1041 IGVF 1044 (1071)
Q Consensus 1041 i~vw 1044 (1071)
|.-|
T Consensus 393 il~~ 396 (398)
T PLN00033 393 LLRY 396 (398)
T ss_pred EEEe
Confidence 7665
No 420
>PHA03098 kelch-like protein; Provisional
Probab=95.17 E-value=1 Score=53.08 Aligned_cols=189 Identities=13% Similarity=0.068 Sum_probs=96.8
Q ss_pred ecCCcEEEEEe-C------CeEEEEECCCCeEEEEEeCCCC--CeEEEEEcCCCCCEEEEEeCC-----CeEEEEEccCC
Q 001477 849 SKNDSYVMSAS-G------GKVSLFNMMTFKVMTMFMSPPP--AATFLAFHPQDNNIIAIGMED-----SSVQIYNVRVD 914 (1071)
Q Consensus 849 s~d~~~la~~~-d------g~i~vwd~~~~~~~~~~~~~~~--~i~~l~~sp~~~~~la~g~~d-----g~v~vwd~~~~ 914 (1071)
..++..++.|+ + ..+..||..+.+-...-.-+.. ....+.+ ++++++.|+.+ ..+..||..++
T Consensus 292 ~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~---~~~lyv~GG~~~~~~~~~v~~yd~~~~ 368 (534)
T PHA03098 292 VLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF---NNRIYVIGGIYNSISLNTVESWKPGES 368 (534)
T ss_pred EECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE---CCEEEEEeCCCCCEecceEEEEcCCCC
Confidence 34666777765 3 2477888877654221111111 1222222 67788888866 35778887765
Q ss_pred eE--EEEecCcCCCeeEEEEcCCCCEEEEEeCC------CcEEEEECCCCceeeeeeecCCCCCCCCCCCceEEEEccCC
Q 001477 915 EV--KTKLKGHQNRITGLAFSPTLNALVSSGAD------AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQ 986 (1071)
Q Consensus 915 ~~--~~~l~~h~~~v~~l~~s~d~~~l~s~~~d------~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg 986 (1071)
+- ...+....... +++ .-++++.+.||.+ ..+..||..+.+....... +.+. -...+...++
T Consensus 369 ~W~~~~~lp~~r~~~-~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~--p~~r------~~~~~~~~~~ 438 (534)
T PHA03098 369 KWREEPPLIFPRYNP-CVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPL--PISH------YGGCAIYHDG 438 (534)
T ss_pred ceeeCCCcCcCCccc-eEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCC--Cccc------cCceEEEECC
Confidence 42 22222111111 122 2367777777732 3578899887654322111 1111 1122334466
Q ss_pred CEEEEEE-C--------CeEEEEeCCCCceeecCCCCCCCCCeeEEEEecCCcEEEEEeCC-----CeEEEEEcCCCeEE
Q 001477 987 THLLVVH-E--------SQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCD-----GAIGVFDAETLRFR 1052 (1071)
Q Consensus 987 ~~l~~~~-d--------~~i~vwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~t~~~D-----g~i~vwd~~~~~~~ 1052 (1071)
+.++.|. + ..+.+||...+.-...............+ .-+++.++.|+.+ ..|.+||..+++..
T Consensus 439 ~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~ 516 (534)
T PHA03098 439 KIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLC--IFNNKIYVVGGDKYEYYINEIEVYDDKTNTWT 516 (534)
T ss_pred EEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEE--EECCEEEEEcCCcCCcccceeEEEeCCCCEEE
Confidence 6666642 1 23788888444433332211101111222 2377887888765 47899999988764
No 421
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.16 E-value=1.3 Score=42.99 Aligned_cols=141 Identities=12% Similarity=0.079 Sum_probs=81.3
Q ss_pred CCeEEEEEcCCCCCEEEEEeCCCeEEEEEccCCeEEEEecCcC--------CCeeEEEEcCCCCEEE-EEeCCCcEEEEE
Q 001477 882 PAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQ--------NRITGLAFSPTLNALV-SSGADAQLCMWS 952 (1071)
Q Consensus 882 ~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~--------~~v~~l~~s~d~~~l~-s~~~d~~v~vWd 952 (1071)
.+.+.-..+| +|++.+-...|-. .++....+++..-+.+|. +--..++|+.|.+.+. +-+.+-+|.-||
T Consensus 109 nR~NDgkvdP-~Gryy~GtMad~~-~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~d 186 (310)
T KOG4499|consen 109 NRLNDGKVDP-DGRYYGGTMADFG-DDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYD 186 (310)
T ss_pred cccccCccCC-CCceeeeeecccc-ccccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceEEeeee
Confidence 3456667789 8888543222211 122222233222222332 2335688988776544 556777887788
Q ss_pred --CCCCceeeeeeecCCCCCCC-CCCCceEEEEccCCCEEEEE-ECCeEEEEeC-CCCceeecCCCCCCCCCeeEEEEec
Q 001477 953 --IDKWEKLKSRFIQAPAGRQS-PLVGETKVQFHNDQTHLLVV-HESQISVYDS-KLECSRSWSPKDALPAPISSAIYSC 1027 (1071)
Q Consensus 953 --~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~dg~~l~~~-~d~~i~vwd~-~~~~~~~~~~~~~h~~~v~~~~~s~ 1027 (1071)
..+|.......+-......+ .....-.++...+|.+.++. +.++|...|. +++.+..+... ...|+|+||-.
T Consensus 187 yd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklP---t~qitsccFgG 263 (310)
T KOG4499|consen 187 YDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLP---TPQITSCCFGG 263 (310)
T ss_pred cCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcC---CCceEEEEecC
Confidence 66766554433322221111 11223456667788877775 6779999999 77777666544 77899999954
No 422
>PHA02790 Kelch-like protein; Provisional
Probab=94.90 E-value=1.8 Score=49.98 Aligned_cols=186 Identities=11% Similarity=-0.019 Sum_probs=97.4
Q ss_pred cCCcEEEEEe-C-----CeEEEEECCCCeEEEEEeCCCCCe-EEEEEcCCCCCEEEEEeCC--CeEEEEEccCCe--EEE
Q 001477 850 KNDSYVMSAS-G-----GKVSLFNMMTFKVMTMFMSPPPAA-TFLAFHPQDNNIIAIGMED--SSVQIYNVRVDE--VKT 918 (1071)
Q Consensus 850 ~d~~~la~~~-d-----g~i~vwd~~~~~~~~~~~~~~~~i-~~l~~sp~~~~~la~g~~d--g~v~vwd~~~~~--~~~ 918 (1071)
.++..+++|+ + ..+..||..+.+-...-.-+.... .+++ .- ++.+.++|+.+ ..+..||..+++ .+.
T Consensus 270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v-~~-~~~iYviGG~~~~~sve~ydp~~n~W~~~~ 347 (480)
T PHA02790 270 VGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV-PA-NNKLYVVGGLPNPTSVERWFHGDAAWVNMP 347 (480)
T ss_pred ECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE-EE-CCEEEEECCcCCCCceEEEECCCCeEEECC
Confidence 4566667776 3 247778877654322211111111 1222 23 67888888864 358888876553 222
Q ss_pred EecCcCCCeeEEEEcCCCCEEEEEeCCC---cEEEEECCCCceeeeeeecCCCCCCCCCCCceEEEEccCCCEEEEEECC
Q 001477 919 KLKGHQNRITGLAFSPTLNALVSSGADA---QLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHES 995 (1071)
Q Consensus 919 ~l~~h~~~v~~l~~s~d~~~l~s~~~d~---~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~ 995 (1071)
.+.........+ .-+|+..+.||.++ .+..||..+.+......+..+. -...+..-+|+..+.| |
T Consensus 348 ~l~~~r~~~~~~--~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r--------~~~~~~~~~~~IYv~G--G 415 (480)
T PHA02790 348 SLLKPRCNPAVA--SINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPH--------YKSCALVFGRRLFLVG--R 415 (480)
T ss_pred CCCCCCcccEEE--EECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcc--------ccceEEEECCEEEEEC--C
Confidence 332111111222 23688888888654 4778888776544221111111 1122334567666666 3
Q ss_pred eEEEEeCCCCceeecCCCCCCCCCeeEEEEecCCcEEEEEeCC-----CeEEEEEcCCCeE
Q 001477 996 QISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCD-----GAIGVFDAETLRF 1051 (1071)
Q Consensus 996 ~i~vwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~t~~~D-----g~i~vwd~~~~~~ 1051 (1071)
.+.+||...+.-....+........ +++ .-+|+..++||.+ .+|..||..+++.
T Consensus 416 ~~e~ydp~~~~W~~~~~m~~~r~~~-~~~-v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W 474 (480)
T PHA02790 416 NAEFYCESSNTWTLIDDPIYPRDNP-ELI-IVDNKLLLIGGFYRGSYIDTIEVYNNRTYSW 474 (480)
T ss_pred ceEEecCCCCcEeEcCCCCCCcccc-EEE-EECCEEEEECCcCCCcccceEEEEECCCCeE
Confidence 5678888544443333221101122 222 3477888888865 4578888887765
No 423
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=94.80 E-value=1.7 Score=50.97 Aligned_cols=194 Identities=14% Similarity=0.123 Sum_probs=107.5
Q ss_pred EEEEEecCCcEEEEEe-C-C-----eEEEEECCCCeEEE--EEeCCCCCeEEEEEcCCCCCEEEEEeCCC-----eEEEE
Q 001477 844 ACIALSKNDSYVMSAS-G-G-----KVSLFNMMTFKVMT--MFMSPPPAATFLAFHPQDNNIIAIGMEDS-----SVQIY 909 (1071)
Q Consensus 844 ~~v~~s~d~~~la~~~-d-g-----~i~vwd~~~~~~~~--~~~~~~~~i~~l~~sp~~~~~la~g~~dg-----~v~vw 909 (1071)
.++++. +|...++|+ | | .+..||..+.+=.. .+...........+ +|.+.|+|+.|| +|..|
T Consensus 326 ~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l---~g~iYavGG~dg~~~l~svE~Y 401 (571)
T KOG4441|consen 326 VGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVL---DGKLYAVGGFDGEKSLNSVECY 401 (571)
T ss_pred ccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEE---CCEEEEEeccccccccccEEEe
Confidence 344443 557777777 6 3 47888887655222 11111112222222 788999999997 47888
Q ss_pred EccCCe--EEEEecCcCCCeeEEEEcCCCCEEEEEeCCC------cEEEEECCCCceeeeeeecCCCCCCCCCCCceEEE
Q 001477 910 NVRVDE--VKTKLKGHQNRITGLAFSPTLNALVSSGADA------QLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQ 981 (1071)
Q Consensus 910 d~~~~~--~~~~l~~h~~~v~~l~~s~d~~~l~s~~~d~------~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 981 (1071)
|..+.+ .+..+........... -+|.+.+.||.|+ ++..||..+.+......+...... ..+
T Consensus 402 Dp~~~~W~~va~m~~~r~~~gv~~--~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~-------~g~- 471 (571)
T KOG4441|consen 402 DPVTNKWTPVAPMLTRRSGHGVAV--LGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSG-------FGV- 471 (571)
T ss_pred cCCCCcccccCCCCcceeeeEEEE--ECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCccccccc-------ceE-
Confidence 877654 2332222122222222 3788888888664 467888888765543333322221 223
Q ss_pred EccCCCEEEE-EECC-----eEEEEeCCCCceeecCCCCCCCCCeeEEEEecCCcEEEEEeCCC-----eEEEEEcCCCe
Q 001477 982 FHNDQTHLLV-VHES-----QISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDG-----AIGVFDAETLR 1050 (1071)
Q Consensus 982 ~s~dg~~l~~-~~d~-----~i~vwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~t~~~Dg-----~i~vwd~~~~~ 1050 (1071)
-.-+++..++ |.|+ +|..||...+....+.........+... .-+++..++|+.|| +|..||-.+.+
T Consensus 472 a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~--~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~ 549 (571)
T KOG4441|consen 472 AVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVV--VLGGKLYAVGGFDGNNNLNTVECYDPETDT 549 (571)
T ss_pred EEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEE--EECCEEEEEecccCccccceeEEcCCCCCc
Confidence 3345556666 4443 4788998555555443322112222222 23677777888886 48888888877
Q ss_pred EEE
Q 001477 1051 FRC 1053 (1071)
Q Consensus 1051 ~~~ 1053 (1071)
...
T Consensus 550 W~~ 552 (571)
T KOG4441|consen 550 WTE 552 (571)
T ss_pred eee
Confidence 654
No 424
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.79 E-value=0.94 Score=52.33 Aligned_cols=113 Identities=15% Similarity=0.170 Sum_probs=77.6
Q ss_pred CEEEEEEecCCCceEEEEEeCCCcEEEEEccCCceeEEec-CCCCCeEEEEecccCCccEEEEEecCCeEEEEEc-----
Q 001477 455 GVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE-GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLY----- 528 (1071)
Q Consensus 455 ~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~----- 528 (1071)
...-+.-|.-++ ..+.-+....+.|||.+.+...+.-. ...+.|..+.|...++|+.+++.|..+.|.+|.-
T Consensus 31 ~~~li~gss~~k--~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy 108 (631)
T PF12234_consen 31 NPSLISGSSIKK--IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY 108 (631)
T ss_pred CcceEeecccCc--EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh
Confidence 344444445455 33344445589999999887554322 4578999999999999999999999999999843
Q ss_pred CCCce----eE--EecCC-CCcEEEEEEccCCCEEEEeccCCCCCCeEEEEeCC
Q 001477 529 DYLGS----RV--DYDAP-GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES 575 (1071)
Q Consensus 529 ~~~~~----~~--~~~~~-~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~ 575 (1071)
.+..+ +. .+..+ .++|.+..|.++|..++.++ +++.++|-.
T Consensus 109 ~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG------Nqlfv~dk~ 156 (631)
T PF12234_consen 109 TNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG------NQLFVFDKW 156 (631)
T ss_pred hcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC------CEEEEECCC
Confidence 11111 11 22333 36899999999998888763 458888743
No 425
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.75 E-value=0.83 Score=52.78 Aligned_cols=119 Identities=14% Similarity=0.251 Sum_probs=76.8
Q ss_pred EeCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEccCCeEEEEec-CcCCCeeEEEEc--CCCCEEEEEeCCCcEEEEEC
Q 001477 877 FMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLK-GHQNRITGLAFS--PTLNALVSSGADAQLCMWSI 953 (1071)
Q Consensus 877 ~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~l~-~h~~~v~~l~~s--~d~~~l~s~~~d~~v~vWd~ 953 (1071)
+...-..++-+.-|. -++..++-+....+.|||...+.+...-. ...+.|..+.|. |||+.+++.|-.+.|.++.-
T Consensus 25 ~~T~i~~~~li~gss-~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q 103 (631)
T PF12234_consen 25 FETGISNPSLISGSS-IKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQ 103 (631)
T ss_pred EecCCCCcceEeecc-cCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEc
Confidence 333333445555555 45555555555689999999887433222 356789999985 68999999999999999854
Q ss_pred CC---------CceeeeeeecCCCCCCCCCCCceEEEEccCCCEEEEEECCeEEEEeC
Q 001477 954 DK---------WEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDS 1002 (1071)
Q Consensus 954 ~~---------~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~ 1002 (1071)
.. ...++...+..... .+|.+..|.++|.+ +++.++.+.|+|-
T Consensus 104 ~R~dy~~~~p~w~~i~~i~i~~~T~-----h~Igds~Wl~~G~L-vV~sGNqlfv~dk 155 (631)
T PF12234_consen 104 LRYDYTNKGPSWAPIRKIDISSHTP-----HPIGDSIWLKDGTL-VVGSGNQLFVFDK 155 (631)
T ss_pred cchhhhcCCcccceeEEEEeecCCC-----CCccceeEecCCeE-EEEeCCEEEEECC
Confidence 21 22222222332222 56889999999965 4556677888876
No 426
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=94.73 E-value=1.3 Score=49.00 Aligned_cols=151 Identities=11% Similarity=0.018 Sum_probs=82.7
Q ss_pred CCeEEEEEcCCCCCEEEEEe-----------CCC-eEEEEEccC--Ce--EEEEecCcCCCeeEEEEcCCCCEEEEEeCC
Q 001477 882 PAATFLAFHPQDNNIIAIGM-----------EDS-SVQIYNVRV--DE--VKTKLKGHQNRITGLAFSPTLNALVSSGAD 945 (1071)
Q Consensus 882 ~~i~~l~~sp~~~~~la~g~-----------~dg-~v~vwd~~~--~~--~~~~l~~h~~~v~~l~~s~d~~~l~s~~~d 945 (1071)
.....|+|.+ +|+++++-. ..+ .|.+++-.+ |+ ....+.........|++.++| +++ +...
T Consensus 14 ~~P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPP 90 (367)
T ss_pred CCCceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCC
Confidence 3457888988 787776542 223 777776543 32 233444334456889999998 555 4444
Q ss_pred CcEEEEECCCCce---eeeeeecCCCCC-CCCCCCceEEEEccCCCEEEE-EEC-------------------CeEEEEe
Q 001477 946 AQLCMWSIDKWEK---LKSRFIQAPAGR-QSPLVGETKVQFHNDQTHLLV-VHE-------------------SQISVYD 1001 (1071)
Q Consensus 946 ~~v~vWd~~~~~~---~~~~~~~~~~~~-~~~~~~v~~~~~s~dg~~l~~-~~d-------------------~~i~vwd 1001 (1071)
...++.+...... .....+...... .........++|.|||++.++ +.. +.|.-++
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~ 170 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYN 170 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEe
Confidence 4333445433111 111122222111 001144678999999988776 411 3344455
Q ss_pred CCCCceeecCCCCCCCCCeeEEEEecCCcEEEEEeCC
Q 001477 1002 SKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCD 1038 (1071)
Q Consensus 1002 ~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~t~~~D 1038 (1071)
..+.....+... -.....++|+++|+++++-..+
T Consensus 171 pdg~~~e~~a~G---~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 171 PDGGKLRVVAHG---FQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred cCCCeEEEEecC---cCCCccceECCCCCEEEEccCC
Confidence 554444443322 3456789999999987764433
No 427
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.57 E-value=1.2 Score=50.85 Aligned_cols=194 Identities=8% Similarity=0.060 Sum_probs=104.2
Q ss_pred eEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEccCCeEEEE--e--cCcCCCeeEEEEcCCCC
Q 001477 862 KVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK--L--KGHQNRITGLAFSPTLN 937 (1071)
Q Consensus 862 ~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~--l--~~h~~~v~~l~~s~d~~ 937 (1071)
.|+||++ +|+++..+.-..+++..+.|+. + .-|.+...||+++||++.... +.. . ......|....+...|-
T Consensus 65 ~I~If~~-sG~lL~~~~w~~~~lI~mgWs~-~-eeLI~v~k~g~v~Vy~~~ge~-ie~~svg~e~~~~~I~ec~~f~~GV 140 (829)
T KOG2280|consen 65 YIRIFNI-SGQLLGRILWKHGELIGMGWSD-D-EELICVQKDGTVHVYGLLGEF-IESNSVGFESQMSDIVECRFFHNGV 140 (829)
T ss_pred eEEEEec-cccchHHHHhcCCCeeeecccC-C-ceEEEEeccceEEEeecchhh-hcccccccccccCceeEEEEecCce
Confidence 4888887 4666666554455888999996 4 456667899999999976432 222 1 11223344445554554
Q ss_pred EEEEEeCCCcEEEEECCCCceeeeeeecCCCCCCCCCCCceEEEEccCCCEEEE--EECC--eEEEEeCCCCceeecCCC
Q 001477 938 ALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV--VHES--QISVYDSKLECSRSWSPK 1013 (1071)
Q Consensus 938 ~l~s~~~d~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~--~~d~--~i~vwd~~~~~~~~~~~~ 1013 (1071)
.+.+.+.+ .+.+-+.+... ........+.. .+-.+...-++++.... .-+- ...++-.+..........
T Consensus 141 avlt~~g~-v~~i~~~~~~~---~~~~~diP~~~---~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~ 213 (829)
T KOG2280|consen 141 AVLTVSGQ-VILINGVEEPK---LRKMPDIPYNE---LPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALS 213 (829)
T ss_pred EEEecCCc-EEEEcCCCcch---hhhCCCCCCcc---CCCcceeEecCCCcceeEEeechhhhhcccceecccccccccC
Confidence 44443322 22232332211 11111111111 11122222233221111 1111 111222211111111111
Q ss_pred CCCCCCeeEEEEecCCcEEEEEeCCCeEEEEEcCCCeEEEEeCCCcccCcccee
Q 001477 1014 DALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVR 1067 (1071)
Q Consensus 1014 ~~h~~~v~~~~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 1067 (1071)
. ..+.+..+..||+.++|+-=+.+|.|.+-+++..+.++.+++....|+-.|+
T Consensus 214 ~-~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~ 266 (829)
T KOG2280|consen 214 W-PNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMA 266 (829)
T ss_pred C-CCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhce
Confidence 1 1467889999999999999999999999999999999999887666665554
No 428
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=94.35 E-value=7.2 Score=40.14 Aligned_cols=203 Identities=15% Similarity=0.151 Sum_probs=119.1
Q ss_pred CEEEEEEecCCCceEEEEEeCCCcEEEEEcc------CCc-eeEEecC-----CCCCeEEEEecccCC----------cc
Q 001477 455 GVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV------AGR-KQYTFEG-----HEAPVYSVCPHHKES----------IQ 512 (1071)
Q Consensus 455 ~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~------~~~-~~~~~~~-----h~~~v~~i~~~~~~~----------~~ 512 (1071)
.-+.++|+|.+. +.++....+...+||.. ..+ .+.++.. .....+.+.|+...+ ..
T Consensus 24 N~WGia~~p~~~--~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a 101 (336)
T TIGR03118 24 NAWGLSYRPGGP--FWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPS 101 (336)
T ss_pred ccceeEecCCCC--EEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccce
Confidence 357899999887 78888888899999986 122 2333332 234567777764321 12
Q ss_pred EEEEEecCCeEEEEEcCCCc-----eeEEecCC--CCcEEEEEEcc--CCCEEEEeccCCCCCCeEEEEeCCCCceeEEe
Q 001477 513 FIFSTAIDGKIKAWLYDYLG-----SRVDYDAP--GNWCTMMAYSA--DGTRLFSCGTSKEGESHLVEWNESEGAIKRTY 583 (1071)
Q Consensus 513 ~l~s~~~d~~i~vwd~~~~~-----~~~~~~~~--~~~i~~~~~s~--~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~ 583 (1071)
.++.+++||+|.-|...-.. ....+... ..-...+++.. .+.+|+.+-- ..++|.++|-.-.+. ..-
T Consensus 102 ~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF---~~g~IDVFd~~f~~~-~~~ 177 (336)
T TIGR03118 102 RFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANF---RQGRIDVFKGSFRPP-PLP 177 (336)
T ss_pred eEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEecc---CCCceEEecCccccc-cCC
Confidence 46888999999999743222 22223211 22344555543 3667776643 477899998542221 110
Q ss_pred eccccc-------c-----------eeEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcC---
Q 001477 584 SGFRKR-------S-----------LGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK--- 642 (1071)
Q Consensus 584 ~~~~~~-------~-----------v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~--- 642 (1071)
....+. + |.-..-.+++..=+.+..-|.|-+||+. ++.++.+...+....-+.|+..|
T Consensus 178 g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~F 256 (336)
T TIGR03118 178 GSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESF 256 (336)
T ss_pred CCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhh
Confidence 000000 0 1111111222222233345789999986 67888776655555667788766
Q ss_pred ---CCCEEEEEeCCCcEEEEEcCCh
Q 001477 643 ---EGSLLAVTTSDNGIKILANSDG 664 (1071)
Q Consensus 643 ---~~~~l~~~~~dg~v~iw~~~~~ 664 (1071)
.|.+|+---.||+|..||..++
T Consensus 257 G~~sg~lLVGNFGDG~InaFD~~sG 281 (336)
T TIGR03118 257 GSLSGALLVGNFGDGTINAYDPQSG 281 (336)
T ss_pred CCCCCCeEEeecCCceeEEecCCCC
Confidence 4566666667999999999887
No 429
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=94.26 E-value=8.5 Score=40.65 Aligned_cols=152 Identities=17% Similarity=0.203 Sum_probs=82.7
Q ss_pred CCCeEEEEEecCCcEEEEEeCCeE-EEEECCCCeEEEEEeCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcc-CCeEE
Q 001477 840 EESAACIALSKNDSYVMSASGGKV-SLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVR-VDEVK 917 (1071)
Q Consensus 840 ~~~v~~v~~s~d~~~la~~~dg~i-~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~-~~~~~ 917 (1071)
...+..+..++||+++++++.|.+ .-||--...-...-+.....|.++.|+| ++.+.+.+ ..|.|+.=+.. ..+.-
T Consensus 144 ~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~-~~~lw~~~-~Gg~~~~s~~~~~~~~w 221 (302)
T PF14870_consen 144 SGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSP-DGNLWMLA-RGGQIQFSDDPDDGETW 221 (302)
T ss_dssp ---EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-T-TS-EEEEE-TTTEEEEEE-TTEEEEE
T ss_pred cceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecC-CCCEEEEe-CCcEEEEccCCCCcccc
Confidence 566888889999999999996665 5677542211122222457899999999 77766644 88999888722 22211
Q ss_pred EE----ecCcCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeecCCCCCCCCCCCceEEEEccCCCEEEEEE
Q 001477 918 TK----LKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVH 993 (1071)
Q Consensus 918 ~~----l~~h~~~v~~l~~s~d~~~l~s~~~d~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~ 993 (1071)
.. +..-.-.+..++|.+++...|+++ .|++ +...+.|+.=+...... . .......+.|.++.+-++.|.
T Consensus 222 ~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l-~~S~DgGktW~~~~~~~--~---~~~n~~~i~f~~~~~gf~lG~ 294 (302)
T PF14870_consen 222 SEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTL-LVSTDGGKTWQKDRVGE--N---VPSNLYRIVFVNPDKGFVLGQ 294 (302)
T ss_dssp ---B-TTSS--S-EEEEEESSSS-EEEEES-TT-E-EEESSTTSS-EE-GGGT--T---SSS---EEEEEETTEEEEE-S
T ss_pred ccccCCcccCceeeEEEEecCCCCEEEEeC-CccE-EEeCCCCccceECcccc--C---CCCceEEEEEcCCCceEEECC
Confidence 11 112233478999999988888666 4433 44555555222111111 0 114578999998899999999
Q ss_pred CCeEEEE
Q 001477 994 ESQISVY 1000 (1071)
Q Consensus 994 d~~i~vw 1000 (1071)
+|.|.-|
T Consensus 295 ~G~ll~~ 301 (302)
T PF14870_consen 295 DGVLLRY 301 (302)
T ss_dssp TTEEEEE
T ss_pred CcEEEEe
Confidence 9987655
No 430
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=94.23 E-value=3.7 Score=45.38 Aligned_cols=148 Identities=11% Similarity=0.122 Sum_probs=89.6
Q ss_pred CCeEEEEEecCCcEEEEEeCCeEEE-EECCCCeE--EEEEeCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEccCCe--
Q 001477 841 ESAACIALSKNDSYVMSASGGKVSL-FNMMTFKV--MTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE-- 915 (1071)
Q Consensus 841 ~~v~~v~~s~d~~~la~~~dg~i~v-wd~~~~~~--~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~-- 915 (1071)
+....+..++||.+++++..|.+.. ||- +.. ...-......++++.+.+ ++.+++++ .+|.+.. ....++
T Consensus 239 Gsf~~v~~~~dG~~~~vg~~G~~~~s~d~--G~~~W~~~~~~~~~~l~~v~~~~-dg~l~l~g-~~G~l~~-S~d~G~~~ 313 (398)
T PLN00033 239 GTFSTVNRSPDGDYVAVSSRGNFYLTWEP--GQPYWQPHNRASARRIQNMGWRA-DGGLWLLT-RGGGLYV-SKGTGLTE 313 (398)
T ss_pred cceeeEEEcCCCCEEEEECCccEEEecCC--CCcceEEecCCCccceeeeeEcC-CCCEEEEe-CCceEEE-ecCCCCcc
Confidence 3456677889999999998776543 442 221 111222345689999998 77777655 5666543 344443
Q ss_pred ---EEEEecC--cCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeecCCCCCCCCCCCceEEEEccCCCEEE
Q 001477 916 ---VKTKLKG--HQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLL 990 (1071)
Q Consensus 916 ---~~~~l~~--h~~~v~~l~~s~d~~~l~s~~~d~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~ 990 (1071)
....+.. -...++++.|.+++..++ +|..|.+.... +.++.=+. ...... .......+.|.++++.++
T Consensus 314 ~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a-~G~~G~v~~s~-D~G~tW~~--~~~~~~---~~~~ly~v~f~~~~~g~~ 386 (398)
T PLN00033 314 EDFDFEEADIKSRGFGILDVGYRSKKEAWA-AGGSGILLRST-DGGKSWKR--DKGADN---IAANLYSVKFFDDKKGFV 386 (398)
T ss_pred cccceeecccCCCCcceEEEEEcCCCcEEE-EECCCcEEEeC-CCCcceeE--ccccCC---CCcceeEEEEcCCCceEE
Confidence 2232221 123488999998877554 56678666554 44332111 010011 114578999999999999
Q ss_pred EEECCeEEEE
Q 001477 991 VVHESQISVY 1000 (1071)
Q Consensus 991 ~~~d~~i~vw 1000 (1071)
+|.+|.|.-|
T Consensus 387 ~G~~G~il~~ 396 (398)
T PLN00033 387 LGNDGVLLRY 396 (398)
T ss_pred EeCCcEEEEe
Confidence 9999987665
No 431
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=94.22 E-value=9.9 Score=41.23 Aligned_cols=161 Identities=13% Similarity=0.137 Sum_probs=93.6
Q ss_pred CCCeEEEEEec-CCcEEEEEeCCe------EEEEECCC--C--eEE-----EEEeCCCC--------CeEEEEEcCCCCC
Q 001477 840 EESAACIALSK-NDSYVMSASGGK------VSLFNMMT--F--KVM-----TMFMSPPP--------AATFLAFHPQDNN 895 (1071)
Q Consensus 840 ~~~v~~v~~s~-d~~~la~~~dg~------i~vwd~~~--~--~~~-----~~~~~~~~--------~i~~l~~sp~~~~ 895 (1071)
-+.++.+.+.+ +++++++.++|. +..+++.. + ..+ ..+....+ ..-++++.+ ++.
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~-~g~ 97 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPP-DGS 97 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEec-CCC
Confidence 56788999994 666666665666 55555443 1 111 11222222 234788866 788
Q ss_pred EEEEEeCC------CeEEEEEccCCeEEEEec---------------CcCCCeeEEEEcCCCCEEEEEeC-----CC--c
Q 001477 896 IIAIGMED------SSVQIYNVRVDEVKTKLK---------------GHQNRITGLAFSPTLNALVSSGA-----DA--Q 947 (1071)
Q Consensus 896 ~la~g~~d------g~v~vwd~~~~~~~~~l~---------------~h~~~v~~l~~s~d~~~l~s~~~-----d~--~ 947 (1071)
++++--.+ ..|+.++.. |+.+..+. ..+....+|+++|||+.|+++.+ |+ .
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~ 176 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRA 176 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccc
Confidence 88877666 788888866 55433331 13456889999999997666542 22 1
Q ss_pred -------EEEEECC--C-CceeeeeeecCCCC-CCCCCCCceEEEEccCCCEEEEEE------CCeEEEEeC
Q 001477 948 -------LCMWSID--K-WEKLKSRFIQAPAG-RQSPLVGETKVQFHNDQTHLLVVH------ESQISVYDS 1002 (1071)
Q Consensus 948 -------v~vWd~~--~-~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~dg~~l~~~~------d~~i~vwd~ 1002 (1071)
++++... + ++............ .......++.+.+-+++++|+.=. ...+++|.+
T Consensus 177 ~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v 248 (326)
T PF13449_consen 177 NPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRV 248 (326)
T ss_pred ccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEE
Confidence 5555444 3 22333333332210 000126789999999999888732 345666665
No 432
>PHA03098 kelch-like protein; Provisional
Probab=94.14 E-value=2.5 Score=49.93 Aligned_cols=151 Identities=7% Similarity=-0.032 Sum_probs=70.0
Q ss_pred ccEEEEEecC-----CeEEEEEcCCCceeEEecCCCCcEEEEEEccCCCEEEEeccCCCC--CCeEEEEeCCCCceeEEe
Q 001477 511 IQFIFSTAID-----GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEG--ESHLVEWNESEGAIKRTY 583 (1071)
Q Consensus 511 ~~~l~s~~~d-----~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~--~~~i~iwd~~~~~~~~~~ 583 (1071)
+.+++.||.+ ..+..||..+..-...-..........+..-+++..+.||....+ -..+..||..+++-...-
T Consensus 343 ~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~ 422 (534)
T PHA03098 343 NRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGS 422 (534)
T ss_pred CEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecC
Confidence 3677777765 246677776544322111111111111122356666666632221 245888998876533211
Q ss_pred ecccccceeEEEEeCCCCEEEEEeCC--------CcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCC--
Q 001477 584 SGFRKRSLGVVQFDTTRNRFLAAGDE--------FQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSD-- 653 (1071)
Q Consensus 584 ~~~~~~~v~~~~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-- 653 (1071)
..... .....+...++..++.||.+ ..+.+||..+++-...-...........+. .++..++.|+.+
T Consensus 423 ~~p~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~ 499 (534)
T PHA03098 423 PLPIS-HYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI--FNNKIYVVGGDKYE 499 (534)
T ss_pred CCCcc-ccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEE--ECCEEEEEcCCcCC
Confidence 11111 11112223345566666632 238888988765332211111111111222 256677777654
Q ss_pred ---CcEEEEEcCCh
Q 001477 654 ---NGIKILANSDG 664 (1071)
Q Consensus 654 ---g~v~iw~~~~~ 664 (1071)
+.+.+||..+.
T Consensus 500 ~~~~~v~~yd~~~~ 513 (534)
T PHA03098 500 YYINEIEVYDDKTN 513 (534)
T ss_pred cccceeEEEeCCCC
Confidence 46777877654
No 433
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=94.11 E-value=11 Score=41.12 Aligned_cols=67 Identities=13% Similarity=0.181 Sum_probs=40.7
Q ss_pred CCCeEEEEEec-------CCcEEEEEe-CCeEEEEECCCCeEEE---EEe-CCCCCeEEEEEcCCCCCEEEEEeCCCeEE
Q 001477 840 EESAACIALSK-------NDSYVMSAS-GGKVSLFNMMTFKVMT---MFM-SPPPAATFLAFHPQDNNIIAIGMEDSSVQ 907 (1071)
Q Consensus 840 ~~~v~~v~~s~-------d~~~la~~~-dg~i~vwd~~~~~~~~---~~~-~~~~~i~~l~~sp~~~~~la~g~~dg~v~ 907 (1071)
...+..+.|-. .|.+++..- .+.|....++....+. .+. ....++..+++.| ||.+.++-+.+|.|+
T Consensus 252 ~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~p-DG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 252 HSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGP-DGALYVSDDSDGKIY 330 (331)
T ss_dssp T--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEET-TSEEEEEE-TTTTEE
T ss_pred ccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcC-CCeEEEEECCCCeEe
Confidence 45666777754 444555554 6788888876443222 222 2344899999999 888888777788774
No 434
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=94.01 E-value=3.1 Score=40.58 Aligned_cols=149 Identities=11% Similarity=0.084 Sum_probs=87.7
Q ss_pred CEEEEEeCCCeEEEEEcc--CCeEEEEecCcCCCeeEEEEcCCCCEEEEEeCC------CcEEE---EECC--CCceeee
Q 001477 895 NIIAIGMEDSSVQIYNVR--VDEVKTKLKGHQNRITGLAFSPTLNALVSSGAD------AQLCM---WSID--KWEKLKS 961 (1071)
Q Consensus 895 ~~la~g~~dg~v~vwd~~--~~~~~~~l~~h~~~v~~l~~s~d~~~l~s~~~d------~~v~v---Wd~~--~~~~~~~ 961 (1071)
..|..+.....|.+|++. ..+++.++. .-+.|..++++..|+||+|-=.+ ..+|+ |+.. ..+.+..
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~-Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFS-TVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEc-chhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 455445667789999998 345666776 44789999999999999985422 14555 4433 1222221
Q ss_pred eeecCCCCCC--------------CCCCCceEEEEccCCCEEEEEECCeEEEEeCCCCce--e--ecCCC------CCCC
Q 001477 962 RFIQAPAGRQ--------------SPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECS--R--SWSPK------DALP 1017 (1071)
Q Consensus 962 ~~~~~~~~~~--------------~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~--~--~~~~~------~~h~ 1017 (1071)
........+. +....+.+++-.|-..-|++|.++.+.+|.+..+.. . .+... +.-+
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~~~ 187 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKYQTIQSEKFSFLDFERSLIDHIDN 187 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEEEEEecccccEEechhhhhheecC
Confidence 1111000000 011456788888877778888899999999822222 1 01111 1113
Q ss_pred CCeeEEEEecCCcEEEEEeCCCeEEEEEcC
Q 001477 1018 APISSAIYSCDGLLVYAGFCDGAIGVFDAE 1047 (1071)
Q Consensus 1018 ~~v~~~~~s~dg~~l~t~~~Dg~i~vwd~~ 1047 (1071)
-.+..++|.. .|+|..+ +-.+++..+.
T Consensus 188 ~~p~~v~ic~--~yiA~~s-~~ev~Vlkl~ 214 (215)
T PF14761_consen 188 FKPTQVAICE--GYIAVMS-DLEVLVLKLE 214 (215)
T ss_pred ceEEEEEEEe--eEEEEec-CCEEEEEEEe
Confidence 3466777764 4888665 6677777654
No 435
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=94.00 E-value=13 Score=41.85 Aligned_cols=114 Identities=8% Similarity=0.001 Sum_probs=66.6
Q ss_pred CcEEEEEEccC----C-CEEEEeccCCCCCCeEEEEeCC-----CCceeEEeeccccc--c--eeEEEEeCCCCEEEEEe
Q 001477 542 NWCTMMAYSAD----G-TRLFSCGTSKEGESHLVEWNES-----EGAIKRTYSGFRKR--S--LGVVQFDTTRNRFLAAG 607 (1071)
Q Consensus 542 ~~i~~~~~s~~----~-~~l~~~~~~~d~~~~i~iwd~~-----~~~~~~~~~~~~~~--~--v~~~~~~~~~~~l~~~~ 607 (1071)
..|..++|.|- . .+|++- ....|.+|.+. +++.+.....+-.. + -..+.|+|....|+.-.
T Consensus 57 EhV~GlsW~P~~~~~~paLLAVQ-----HkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT 131 (671)
T PF15390_consen 57 EHVHGLSWAPPCTADTPALLAVQ-----HKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLT 131 (671)
T ss_pred ceeeeeeecCcccCCCCceEEEe-----ccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEe
Confidence 46889999984 3 344443 26679999875 23333222222111 1 12467999988887755
Q ss_pred CCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCC-CcEEEEEc
Q 001477 608 DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSD-NGIKILAN 661 (1071)
Q Consensus 608 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g~v~iw~~ 661 (1071)
....-.++++........... ...+.|.|.+|.+||+.|+++-.. =.-++||-
T Consensus 132 ~~dvSV~~sV~~d~srVkaDi-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 132 ARDVSVLPSVHCDSSRVKADI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDS 185 (671)
T ss_pred cCceeEeeeeeeCCceEEEec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecC
Confidence 444444555554333222222 222468999999999988776543 34567874
No 436
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=93.97 E-value=0.2 Score=48.54 Aligned_cols=106 Identities=12% Similarity=0.106 Sum_probs=64.6
Q ss_pred CCCEEEEEeCCCeEEEEEecCCCccceeeEeecccCCEEEEE-EecCCCceEEEEEeCCCcEEEEEccCCceeEEecCCC
Q 001477 419 DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIA-FAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHE 497 (1071)
Q Consensus 419 d~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~-~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~ 497 (1071)
-+..+++|+.+|.|.+|+.+........ ...-...|.++. -..++. +..+++.|+.|+.|++.-++.+.....|.
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~--~~s~~e~i~~~Ip~~~~~~--~~c~~~~dg~ir~~n~~p~k~~g~~g~h~ 144 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGAHSDR--VCSGEESIDLGIPNGRDSS--LGCVGAQDGRIRACNIKPNKVLGYVGQHN 144 (238)
T ss_pred cCceEEeecccceEEEecCCccchHHHh--hhcccccceeccccccccc--eeEEeccCCceeeeccccCceeeeecccc
Confidence 3567889999999999998743222111 111222333322 233344 67889999999999999888877766666
Q ss_pred -CCeEEEEecccCCccEEEEE--ecCCeEEEEEcCC
Q 001477 498 -APVYSVCPHHKESIQFIFST--AIDGKIKAWLYDY 530 (1071)
Q Consensus 498 -~~v~~i~~~~~~~~~~l~s~--~~d~~i~vwd~~~ 530 (1071)
.++......... ..+.++ |.|..++.|++..
T Consensus 145 ~~~~e~~ivv~sd--~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 145 FESGEELIVVGSD--EFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred CCCcceeEEecCC--ceEEeeccccchhhhhcchhh
Confidence 444444333222 455555 6666666666553
No 437
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=93.68 E-value=0.0088 Score=63.66 Aligned_cols=244 Identities=15% Similarity=0.161 Sum_probs=135.6
Q ss_pred EEEEEecccchhhhccccceeEEEecccccCCCCCccceeecceeccCCCCCccccccCCCCCCCCCeEEEEEecCCcEE
Q 001477 776 VRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYV 855 (1071)
Q Consensus 776 ~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~v~~s~d~~~l 855 (1071)
....+.|.+..++.++.+..+..||-.. +.+.. .. . .+....++|..++..+
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD~ag-----------------------q~~le-~n---~-tg~aldm~wDkegdvl 89 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYDKAG-----------------------QVILE-LN---P-TGKALDMAWDKEGDVL 89 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhhhhc-----------------------ceecc-cC---C-chhHhhhhhccccchh
Confidence 3456667777788888887777765321 11110 11 1 4556677888888877
Q ss_pred EEEe--CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEccCCeEEEEecCcCCCeeEEEEc
Q 001477 856 MSAS--GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFS 933 (1071)
Q Consensus 856 a~~~--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~~~v~~l~~s 933 (1071)
++.. .+.+.+||+.+......-.+-...-.-+.|++ +...++.|...|.+.|++-.+.+.+.+...|..+++++++.
T Consensus 90 avlAek~~piylwd~n~eytqqLE~gg~~s~sll~wsK-g~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~ 168 (615)
T KOG2247|consen 90 AVLAEKTGPIYLWDVNSEYTQQLESGGTSSKSLLAWSK-GTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVT 168 (615)
T ss_pred hhhhhcCCCeeechhhhhhHHHHhccCcchHHHHhhcc-CCccccccccccceEEEeccchhhhhhhcccccceeEEEec
Confidence 7665 78999999975322111111111122278999 88999999999999999998887766666699999999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCceeeeeeecCCCCCCCCCCCceEEEEccCCCEEEEEECCeEEEEeC----CCCcee-
Q 001477 934 PTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDS----KLECSR- 1008 (1071)
Q Consensus 934 ~d~~~l~s~~~d~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~----~~~~~~- 1008 (1071)
+.+. .+.++.|..+.+-...+........-..+..-.. .-+.-=.|..-|..+...-.+.+.+.-. ..+...
T Consensus 169 lEd~-vil~dcd~~L~v~~qegeta~ltevggepdnm~~--~y~k~n~w~kage~m~sVvsgKkhl~yak~nE~D~pval 245 (615)
T KOG2247|consen 169 LEDY-VILCDCDNTLSVTTQEGETASLTEVGGEPDNMDF--FYGKVNGWGKAGETMVSVVSGKKHLMYAKYNELDEPVAL 245 (615)
T ss_pred ccce-eeecCcHHHHHHhhhccceeeeeeccCccchhhh--heeeeeccccccceeeeeeecHHHHHHHhhcCCCCccce
Confidence 8764 5566666655443333211100000000000000 0001112333344444332232222211 111111
Q ss_pred ecCCCCCCCCCeeEEEEecCCcEEEEEeCCCeEEEEEcCCCeEEEEe
Q 001477 1009 SWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRI 1055 (1071)
Q Consensus 1009 ~~~~~~~h~~~v~~~~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~ 1055 (1071)
.+... .+.+-|+.|--||..+. +..-|.|..-.+.++++.++|
T Consensus 246 ~fq~~---~gni~cyrwylDg~i~i-gf~ag~iV~iS~h~aeLgaef 288 (615)
T KOG2247|consen 246 QFQEK---YGNIHCYRWYLDGYILI-GFDAGYIVSISAHNAELGAEF 288 (615)
T ss_pred Eeeec---CCceeEEEEeccccccc-cccceeEEEEeccchHHHHHH
Confidence 12221 56788999988886554 666666666667776665443
No 438
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=92.98 E-value=3.6 Score=39.39 Aligned_cols=106 Identities=12% Similarity=0.082 Sum_probs=67.2
Q ss_pred CCcEEEEEe---CCeEEEEECCCCeEEEEEeCCCCCeEE--EEEcCCCCCEEEEEeCCCeEEEEEccCCeEEEEecCcCC
Q 001477 851 NDSYVMSAS---GGKVSLFNMMTFKVMTMFMSPPPAATF--LAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQN 925 (1071)
Q Consensus 851 d~~~la~~~---dg~i~vwd~~~~~~~~~~~~~~~~i~~--l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~~ 925 (1071)
+|.++.+.+ ...|++||+.+++.+....-....+.. +.-. +..+.+-.-.+|...++|..+-+++..+. ..+
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~--gd~~y~LTw~egvaf~~d~~t~~~lg~~~-y~G 131 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKL--GDYFYQLTWKEGVAFKYDADTLEELGRFS-YEG 131 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeec--cceEEEEEeccceeEEEChHHhhhhcccc-cCC
Confidence 556666665 357999999999887765433222211 1111 23344455678999999999988887776 334
Q ss_pred CeeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeee
Q 001477 926 RITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKS 961 (1071)
Q Consensus 926 ~v~~l~~s~d~~~l~s~~~d~~v~vWd~~~~~~~~~ 961 (1071)
.=+.++. |+..|..++...+++.-|.++......
T Consensus 132 eGWgLt~--d~~~LimsdGsatL~frdP~tfa~~~~ 165 (262)
T COG3823 132 EGWGLTS--DDKNLIMSDGSATLQFRDPKTFAELDT 165 (262)
T ss_pred cceeeec--CCcceEeeCCceEEEecCHHHhhhcce
Confidence 4466653 566666666666788888777554433
No 439
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=92.97 E-value=11 Score=37.93 Aligned_cols=189 Identities=13% Similarity=0.095 Sum_probs=117.0
Q ss_pred CCCeEEEEEecCCcEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEccCCeEEE
Q 001477 840 EESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKT 918 (1071)
Q Consensus 840 ~~~v~~v~~s~d~~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~ 918 (1071)
...-..|+-+|||..-.++. .+.|--.|-.+++....-.+....-..+..-| |+..-++-+.. -|.=.|-++.+. .
T Consensus 61 G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gp-dg~~Witd~~~-aI~R~dpkt~ev-t 137 (353)
T COG4257 61 GSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGP-DGSAWITDTGL-AIGRLDPKTLEV-T 137 (353)
T ss_pred CCCccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECC-CCCeeEecCcc-eeEEecCcccce-E
Confidence 45566788999999888887 77888888889888777666666778888889 44444332222 444455444442 2
Q ss_pred Ee----cCcCCCeeEEEEcCCCCEEEEEeCC---------CcEEEEECCCCceeeeeeecCCCCCCCCCCCceEEEEccC
Q 001477 919 KL----KGHQNRITGLAFSPTLNALVSSGAD---------AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHND 985 (1071)
Q Consensus 919 ~l----~~h~~~v~~l~~s~d~~~l~s~~~d---------~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 985 (1071)
++ +.-........|.++|.+.+++... +.|++|+...| .....++..||
T Consensus 138 ~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG------------------~gpyGi~atpd 199 (353)
T COG4257 138 RFPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQG------------------GGPYGICATPD 199 (353)
T ss_pred EeecccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCCC------------------CCCcceEECCC
Confidence 22 2234567788999999999887622 33555544332 34578999999
Q ss_pred CCEEEEE-ECCeEEEEeC-CCCceeecCCCCCCCCCeeEEEEecCCcEEEEEeCCCeEEEEEcCCCe
Q 001477 986 QTHLLVV-HESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLR 1050 (1071)
Q Consensus 986 g~~l~~~-~d~~i~vwd~-~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~t~~~Dg~i~vwd~~~~~ 1050 (1071)
|...+++ .++.|-..|. ++ .-..+.....-...-..+.-+|.|+.-+|....+.+..+|-.+..
T Consensus 200 Gsvwyaslagnaiaridp~~~-~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s 265 (353)
T COG4257 200 GSVWYASLAGNAIARIDPFAG-HAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS 265 (353)
T ss_pred CcEEEEeccccceEEcccccC-CcceecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc
Confidence 9887775 4555655565 22 111222111112223344556677777776666777777665544
No 440
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=92.91 E-value=3.5 Score=48.32 Aligned_cols=174 Identities=12% Similarity=0.109 Sum_probs=96.0
Q ss_pred CcEEEEEeCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEccCCeEEEEecCcCCCeeEEE
Q 001477 852 DSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLA 931 (1071)
Q Consensus 852 ~~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~~~v~~l~ 931 (1071)
+.++.++..+.|.||+.+...... ...++..+...| .. +...|+.+..|. ..|. |..|.
T Consensus 49 ~n~LFiA~~s~I~Vy~~d~l~~~p----~~~p~~~~~t~p---~~--~~~~D~~~s~~p----------~PHt--IN~i~ 107 (717)
T PF08728_consen 49 RNLLFIAYQSEIYVYDPDGLTQLP----SRKPCLRFDTKP---EF--TSTPDRLISTWP----------FPHT--INFIK 107 (717)
T ss_pred CCEEEEEECCEEEEEecCCccccc----ccccccccccCc---cc--cccccccccCCC----------CCce--eeEEE
Confidence 778888889999999986532211 111122222222 11 223344333332 1122 33332
Q ss_pred Ec--CCCCEEEEEeCCCcEEEEECCCCc--------eeee---eeecCCCCCCCCCCCceEEEEc--cCCCEEEEEE-CC
Q 001477 932 FS--PTLNALVSSGADAQLCMWSIDKWE--------KLKS---RFIQAPAGRQSPLVGETKVQFH--NDQTHLLVVH-ES 995 (1071)
Q Consensus 932 ~s--~d~~~l~s~~~d~~v~vWd~~~~~--------~~~~---~~~~~~~~~~~~~~~v~~~~~s--~dg~~l~~~~-d~ 995 (1071)
.. -+...|+.|.+||.|.+|.++.-- .... .....+.-.........++++. ...++||+++ ..
T Consensus 108 v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~ 187 (717)
T PF08728_consen 108 VGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQ 187 (717)
T ss_pred ecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCc
Confidence 22 245678888889999999764300 0000 0000000001111457888888 7888999875 45
Q ss_pred eEEEEeCCCC-ceeecCCCCCCCCCeeEEEEecCC---c---EEEEEeCCCeEEEEEc
Q 001477 996 QISVYDSKLE-CSRSWSPKDALPAPISSAIYSCDG---L---LVYAGFCDGAIGVFDA 1046 (1071)
Q Consensus 996 ~i~vwd~~~~-~~~~~~~~~~h~~~v~~~~~s~dg---~---~l~t~~~Dg~i~vwd~ 1046 (1071)
.|.||-.... ..........|...|-+++|-++. . +|++++-.|.+.+|++
T Consensus 188 ~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 188 EVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred eEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 7777776221 111112233467889999997754 2 7888999999999888
No 441
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=92.90 E-value=4.9 Score=43.58 Aligned_cols=152 Identities=15% Similarity=0.148 Sum_probs=87.6
Q ss_pred CCCeEEEEEcCCCCCEEEEEeCCCe------EEEEEccC--C--eEE-----EEecCcCC--------CeeEEEEcCCCC
Q 001477 881 PPAATFLAFHPQDNNIIAIGMEDSS------VQIYNVRV--D--EVK-----TKLKGHQN--------RITGLAFSPTLN 937 (1071)
Q Consensus 881 ~~~i~~l~~sp~~~~~la~g~~dg~------v~vwd~~~--~--~~~-----~~l~~h~~--------~v~~l~~s~d~~ 937 (1071)
-+.+..+.+.|+++ .+++.+++|. ++.+++.. + ..+ ..+..-.+ ...+|++.++|.
T Consensus 19 ~GGlSgl~~~~~~~-~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~ 97 (326)
T PF13449_consen 19 FGGLSGLDYDPDDG-RFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS 97 (326)
T ss_pred cCcEeeEEEeCCCC-EEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC
Confidence 35678899987344 4555667777 66666553 1 011 11222221 344788888899
Q ss_pred EEEEEeCC------CcEEEEECCCCceeeeeeecCCC-------CCCCCCCCceEEEEccCCCEEEEEE------CC--e
Q 001477 938 ALVSSGAD------AQLCMWSIDKWEKLKSRFIQAPA-------GRQSPLVGETKVQFHNDQTHLLVVH------ES--Q 996 (1071)
Q Consensus 938 ~l~s~~~d------~~v~vWd~~~~~~~~~~~~~~~~-------~~~~~~~~v~~~~~s~dg~~l~~~~------d~--~ 996 (1071)
++++.=.+ ..|+.++.. |+......+...- .........-+++++|||+.|.++. |+ .
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~ 176 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRA 176 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccc
Confidence 88887667 778888877 5544333221111 1122336788999999999555431 32 1
Q ss_pred -------EEEEeC--C--CCceeecC-CCCC-----CCCCeeEEEEecCCcEEEE
Q 001477 997 -------ISVYDS--K--LECSRSWS-PKDA-----LPAPISSAIYSCDGLLVYA 1034 (1071)
Q Consensus 997 -------i~vwd~--~--~~~~~~~~-~~~~-----h~~~v~~~~~s~dg~~l~t 1034 (1071)
++++.. . +.....+. .... ....|+.+.+-+|+++|+.
T Consensus 177 ~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 177 NPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred ccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 455544 2 22222221 1111 3678999999999997774
No 442
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.73 E-value=0.67 Score=55.27 Aligned_cols=146 Identities=15% Similarity=0.100 Sum_probs=95.7
Q ss_pred CCCeEEEEEecCCcEEEEEe--C-CeEEEEECCCCeEEE-----EEeCCC------CCeEEEEEcCCCCCEEEEEeCCCe
Q 001477 840 EESAACIALSKNDSYVMSAS--G-GKVSLFNMMTFKVMT-----MFMSPP------PAATFLAFHPQDNNIIAIGMEDSS 905 (1071)
Q Consensus 840 ~~~v~~v~~s~d~~~la~~~--d-g~i~vwd~~~~~~~~-----~~~~~~------~~i~~l~~sp~~~~~la~g~~dg~ 905 (1071)
...+..+...+|++..++.. + -.|..||+.+...-. .+..|. .-..++.|.|.=....|+...|+.
T Consensus 100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls 179 (1405)
T KOG3630|consen 100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS 179 (1405)
T ss_pred cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence 45666777888888766654 3 368999987643221 122221 234677888843445677788999
Q ss_pred EEEEEccCC-eEEEEecCcCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeecCCCCCCCCCCCceEEEEcc
Q 001477 906 VQIYNVRVD-EVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHN 984 (1071)
Q Consensus 906 v~vwd~~~~-~~~~~l~~h~~~v~~l~~s~d~~~l~s~~~d~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 984 (1071)
|+|..+.-. .....+. ....+++++|+|.|+.++.|-..|++.-|...-..... +..+... ....|.+|.|-.
T Consensus 180 l~V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~---ip~Pp~~--e~yrvl~v~Wl~ 253 (1405)
T KOG3630|consen 180 LRVKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSE---IPEPPVE--ENYRVLSVTWLS 253 (1405)
T ss_pred hhhhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeecccceeec---ccCCCcC--CCcceeEEEEec
Confidence 998876532 2233333 45568999999999999999999999998766532221 1111111 126789999988
Q ss_pred CCCEEEE
Q 001477 985 DQTHLLV 991 (1071)
Q Consensus 985 dg~~l~~ 991 (1071)
.-.++++
T Consensus 254 t~eflvv 260 (1405)
T KOG3630|consen 254 TQEFLVV 260 (1405)
T ss_pred ceeEEEE
Confidence 8888776
No 443
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=92.62 E-value=3.6 Score=45.56 Aligned_cols=139 Identities=12% Similarity=0.130 Sum_probs=80.1
Q ss_pred CCeEEEEEecCCcEEEEEe------------CC-eEEEEECCC--Ce--EEEEEeCCCCCeEEEEEcCCCCCEEEEEeCC
Q 001477 841 ESAACIALSKNDSYVMSAS------------GG-KVSLFNMMT--FK--VMTMFMSPPPAATFLAFHPQDNNIIAIGMED 903 (1071)
Q Consensus 841 ~~v~~v~~s~d~~~la~~~------------dg-~i~vwd~~~--~~--~~~~~~~~~~~i~~l~~sp~~~~~la~g~~d 903 (1071)
.....|+|.++|+++++-. .+ .|.+++-.+ ++ ....+.......+.+++.+ ++ +++ +...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~-~G-lyV-~~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAV-GG-VYV-ATPP 90 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEec-CC-EEE-eCCC
Confidence 3467899999999887742 23 787776542 22 2234443444568899998 77 444 4444
Q ss_pred CeEEEE-EccC-----Ce---EEEEecC----cCCCeeEEEEcCCCCEEEEEeCC-------------------CcEEEE
Q 001477 904 SSVQIY-NVRV-----DE---VKTKLKG----HQNRITGLAFSPTLNALVSSGAD-------------------AQLCMW 951 (1071)
Q Consensus 904 g~v~vw-d~~~-----~~---~~~~l~~----h~~~v~~l~~s~d~~~l~s~~~d-------------------~~v~vW 951 (1071)
.|..| |... ++ ++..+.. +......++|.|||.+.++.+.. +.|.-+
T Consensus 91 -~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~ 169 (367)
T TIGR02604 91 -DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRY 169 (367)
T ss_pred -eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEE
Confidence 34434 4431 11 1222322 12346789999999988876621 334444
Q ss_pred ECCCCceeeeeeecCCCCCCCCCCCceEEEEccCCCEEEEE
Q 001477 952 SIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV 992 (1071)
Q Consensus 952 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~ 992 (1071)
+.++++.. .+ ..+. .....++|+|+|+++++-
T Consensus 170 ~pdg~~~e---~~--a~G~----rnp~Gl~~d~~G~l~~td 201 (367)
T TIGR02604 170 NPDGGKLR---VV--AHGF----QNPYGHSVDSWGDVFFCD 201 (367)
T ss_pred ecCCCeEE---EE--ecCc----CCCccceECCCCCEEEEc
Confidence 55443311 11 1221 345789999999998773
No 444
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=92.62 E-value=0.084 Score=60.67 Aligned_cols=176 Identities=12% Similarity=0.187 Sum_probs=100.7
Q ss_pred CeEEEEECCC--CeEEEEE-----eCCCCC---eEEEEEcCCCCCEEEEEeCCCeEEEEEccCCeEEEEecCcCCCeeEE
Q 001477 861 GKVSLFNMMT--FKVMTMF-----MSPPPA---ATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGL 930 (1071)
Q Consensus 861 g~i~vwd~~~--~~~~~~~-----~~~~~~---i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~~~v~~l 930 (1071)
|.+.|||++- |+....+ ..-... |..+-|-+ +.-++.++..++.|++..+.+... ..+++|+..++.+
T Consensus 153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~-~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~ 230 (1283)
T KOG1916|consen 153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAV-NKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDM 230 (1283)
T ss_pred hhhheeehHhhccccccceEEeecCcCCCCcceeeeccccc-ccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccH
Confidence 6788898762 3332222 111222 44444445 556777888899999988776543 4456687766665
Q ss_pred E-----------EcCCCCEEEEEeCCCcEEEEECCCCceeeeeeecCCCCCCCCCCCceEEEEccC-------CCE--EE
Q 001477 931 A-----------FSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHND-------QTH--LL 990 (1071)
Q Consensus 931 ~-----------~s~d~~~l~s~~~d~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-------g~~--l~ 990 (1071)
+ .||||+.+|.++.||.+++|.+--.......++.....|.. .+-.|..|... +++ ++
T Consensus 231 a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~--~p~vC~lc~~~~~~~v~i~~w~~~I 308 (1283)
T KOG1916|consen 231 AFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDK--HPRVCWLCHKQEILVVSIGKWVLRI 308 (1283)
T ss_pred HHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCC--CCceeeeeccccccCCccceeEEEE
Confidence 4 48999999999999999999875443344445555544432 11122223221 222 33
Q ss_pred EEE--CCeEEEEeC-CCCceeecCCCCCCCCCeeEEEEecCCc------------EEEEEeCCCeEEEEEc
Q 001477 991 VVH--ESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGL------------LVYAGFCDGAIGVFDA 1046 (1071)
Q Consensus 991 ~~~--d~~i~vwd~-~~~~~~~~~~~~~h~~~v~~~~~s~dg~------------~l~t~~~Dg~i~vwd~ 1046 (1071)
++. +..+++|.- -.+|..... ...|..+. -+||+ .+++.+.|++|.+|.=
T Consensus 309 tttd~nre~k~w~~a~w~Cll~~~-----~d~v~iV~-p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn 373 (1283)
T KOG1916|consen 309 TTTDVNREEKFWAEAPWQCLLDKL-----IDGVQIVG-PHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQN 373 (1283)
T ss_pred ecccCCcceeEeeccchhhhhhhc-----ccceEeec-CCCccccchhhhHHHHHHHHHhhhHHHHHHhhc
Confidence 343 467899987 556552211 12233333 23332 2344567788888853
No 445
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.41 E-value=1.4 Score=52.85 Aligned_cols=145 Identities=12% Similarity=0.040 Sum_probs=91.6
Q ss_pred CEEEEEEecCCCceEEEEEeCCCcEEEEEccCCcee-----EEec------CCCCCeEEEEecccCCccEEEEEecCCeE
Q 001477 455 GVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ-----YTFE------GHEAPVYSVCPHHKESIQFIFSTAIDGKI 523 (1071)
Q Consensus 455 ~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~-----~~~~------~h~~~v~~i~~~~~~~~~~l~s~~~d~~i 523 (1071)
++..+...+|+....++..+.+-.|..+|+++-..- .-|. .....+.++.|+|.-. ...+....|+.|
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp-~n~av~l~dlsl 180 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVP-LNSAVDLSDLSL 180 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCcc-chhhhhccccch
Confidence 566677778877544555566668899998753211 1111 1233455677887654 456777888988
Q ss_pred EEEEcCCCceeEEecCCCCcEEEEEEccCCCEEEEeccCCCCCCeEEEEeCCCCceeEEeec---ccccceeEEEEeCCC
Q 001477 524 KAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSG---FRKRSLGVVQFDTTR 600 (1071)
Q Consensus 524 ~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~---~~~~~v~~~~~~~~~ 600 (1071)
++..+........--......++++|+|.|+.++.+- +.|++.-|... .+....+.+ .....|.+++|-...
T Consensus 181 ~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~----nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~ 255 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGR----NNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQ 255 (1405)
T ss_pred hhhhhhhhhhhhcccCcccceeeEEeccccceeeEec----CCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecce
Confidence 8876553333222222345789999999999999985 47778777644 443333332 223368899998777
Q ss_pred CEEEE
Q 001477 601 NRFLA 605 (1071)
Q Consensus 601 ~~l~~ 605 (1071)
.+++.
T Consensus 256 eflvv 260 (1405)
T KOG3630|consen 256 EFLVV 260 (1405)
T ss_pred eEEEE
Confidence 77665
No 446
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.38 E-value=4.2 Score=43.71 Aligned_cols=157 Identities=8% Similarity=0.033 Sum_probs=96.0
Q ss_pred eEEEEEcCCCCCEEEEEeCCCeEEEEEccCC---eEEEEecCcCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCceee
Q 001477 884 ATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD---EVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLK 960 (1071)
Q Consensus 884 i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~---~~~~~l~~h~~~v~~l~~s~d~~~l~s~~~d~~v~vWd~~~~~~~~ 960 (1071)
-+.+-|.. .++.|. +...|.+.=|-+..- -++..-....++|.++.||+|.+.||.--.|++|.+.+....+...
T Consensus 25 sngvFfDD-aNkqlf-avrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l 102 (657)
T KOG2377|consen 25 SNGVFFDD-ANKQLF-AVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQL 102 (657)
T ss_pred ccceeecc-CcceEE-EEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhh
Confidence 45566654 333333 334455666655422 2222223456799999999999999999999999999985533222
Q ss_pred eeeecCCCCCCCCCCCceEEEEccCCCEEEEEECCeEEEEeC--CCCceeecCCCCCCCCCeeEEEEecCCcEEEEEe--
Q 001477 961 SRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDS--KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGF-- 1036 (1071)
Q Consensus 961 ~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~--~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~t~~-- 1036 (1071)
........+ ...|.+..|+.. .-+|...+..+.+|.+ ..+.++.. ..|+..|.=..|.++-+.++-++
T Consensus 103 ~~~~~ck~k----~~~IlGF~W~~s-~e~A~i~~~G~e~y~v~pekrslRlV---ks~~~nvnWy~yc~et~v~LL~t~~ 174 (657)
T KOG2377|consen 103 EYTQECKTK----NANILGFCWTSS-TEIAFITDQGIEFYQVLPEKRSLRLV---KSHNLNVNWYMYCPETAVILLSTTV 174 (657)
T ss_pred HHHHHhccC----cceeEEEEEecC-eeEEEEecCCeEEEEEchhhhhhhhh---hhcccCccEEEEccccceEeeeccc
Confidence 111111111 145888899876 6677777888888887 44444443 33477788888888888654333
Q ss_pred CCCeEEEEEcCCCe
Q 001477 1037 CDGAIGVFDAETLR 1050 (1071)
Q Consensus 1037 ~Dg~i~vwd~~~~~ 1050 (1071)
..+++.=+.+.++.
T Consensus 175 ~~n~lnpf~~~~~~ 188 (657)
T KOG2377|consen 175 LENVLNPFHFRAGT 188 (657)
T ss_pred cccccccEEEeece
Confidence 33344444544444
No 447
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=91.96 E-value=17 Score=38.53 Aligned_cols=195 Identities=13% Similarity=0.109 Sum_probs=0.0
Q ss_pred CeEEEEEecCCcEEEEEeCC-------------eEEEEECCCCeEEEEEe------CCCCCeEEEEEcCCCC----CEEE
Q 001477 842 SAACIALSKNDSYVMSASGG-------------KVSLFNMMTFKVMTMFM------SPPPAATFLAFHPQDN----NIIA 898 (1071)
Q Consensus 842 ~v~~v~~s~d~~~la~~~dg-------------~i~vwd~~~~~~~~~~~------~~~~~i~~l~~sp~~~----~~la 898 (1071)
.|..+...+++++-+.=+.. +|.+||+.+.++++++. ...+....+.+...++ .++.
T Consensus 2 sV~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aY 81 (287)
T PF03022_consen 2 SVQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAY 81 (287)
T ss_dssp -EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEE
Q ss_pred EEeCC-CeEEEEEccCCeEEEEecCc-------------------CCCeeEEEEcC---CCCEEEEEeCCCcEEEEECCC
Q 001477 899 IGMED-SSVQIYNVRVDEVKTKLKGH-------------------QNRITGLAFSP---TLNALVSSGADAQLCMWSIDK 955 (1071)
Q Consensus 899 ~g~~d-g~v~vwd~~~~~~~~~l~~h-------------------~~~v~~l~~s~---d~~~l~s~~~d~~v~vWd~~~ 955 (1071)
.+... +-+.|+|+.+++.-+.+..+ .+.+..++.+| |+++|.-..-.+ -++|.+.+
T Consensus 82 ItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T 160 (287)
T PF03022_consen 82 ITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPT 160 (287)
T ss_dssp EEETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEH
T ss_pred EeCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEH
Q ss_pred CceeeeeeecCC------CCCCCCCCCceEEEEccCCCEEEE-EECCeEEEEeCCC----CceeecCCCCCCCCCeeEEE
Q 001477 956 WEKLKSRFIQAP------AGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDSKL----ECSRSWSPKDALPAPISSAI 1024 (1071)
Q Consensus 956 ~~~~~~~~~~~~------~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~i~vwd~~~----~~~~~~~~~~~h~~~v~~~~ 1024 (1071)
.-.......... ..--........++++++|.++.+ ...+.|..|+..+ +....+......-.-+..++
T Consensus 161 ~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~ 240 (287)
T PF03022_consen 161 SVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLK 240 (287)
T ss_dssp HHHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEE
T ss_pred HHhhCccccccccccccceeccccCCCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceee
Q ss_pred Eec--CCcEEEEEeC
Q 001477 1025 YSC--DGLLVYAGFC 1037 (1071)
Q Consensus 1025 ~s~--dg~~l~t~~~ 1037 (1071)
+.+ +|.+.+.+..
T Consensus 241 i~~~~~g~L~v~snr 255 (287)
T PF03022_consen 241 IDPEGDGYLWVLSNR 255 (287)
T ss_dssp E-T--TS-EEEEE-S
T ss_pred eccccCceEEEEECc
No 448
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=91.88 E-value=23 Score=42.67 Aligned_cols=75 Identities=12% Similarity=0.156 Sum_probs=54.4
Q ss_pred CCCeEEEEEecCCcEEEEEeCCeEEEEECCC----------CeE--E-EEE--------eCCCCCeEEEEEcCC--CCCE
Q 001477 840 EESAACIALSKNDSYVMSASGGKVSLFNMMT----------FKV--M-TMF--------MSPPPAATFLAFHPQ--DNNI 896 (1071)
Q Consensus 840 ~~~v~~v~~s~d~~~la~~~dg~i~vwd~~~----------~~~--~-~~~--------~~~~~~i~~l~~sp~--~~~~ 896 (1071)
.-.|..+.++|+|+++|..+...|.|..+.. ++. . +++ ..+...|..+.|+|. .+..
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 5678999999999999999866666665532 111 1 111 123457899999994 2578
Q ss_pred EEEEeCCCeEEEEEccCC
Q 001477 897 IAIGMEDSSVQIYNVRVD 914 (1071)
Q Consensus 897 la~g~~dg~v~vwd~~~~ 914 (1071)
|++-+.|+++++||+...
T Consensus 164 l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISDP 181 (717)
T ss_pred EEEEecCCEEEEEecCCC
Confidence 889999999999999754
No 449
>PHA02790 Kelch-like protein; Provisional
Probab=91.62 E-value=7.1 Score=45.09 Aligned_cols=184 Identities=7% Similarity=-0.124 Sum_probs=81.0
Q ss_pred CCCEEEEEeCC-----CeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCC--CcEEEEEccCCceeE
Q 001477 419 DGLMLGVAFSK-----HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD--KMIKVWDVVAGRKQY 491 (1071)
Q Consensus 419 d~~~la~~~~d-----g~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d--~~i~iwd~~~~~~~~ 491 (1071)
++..+++|+.+ ..+..||..++.-.. ...+....... +++ .-++. +.+.||.+ ..+..||..+++...
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~-~~~m~~~r~~~-~~v-~~~~~--iYviGG~~~~~sve~ydp~~n~W~~ 345 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIP-IPPMNSPRLYA-SGV-PANNK--LYVVGGLPNPTSVERWFHGDAAWVN 345 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEE-CCCCCchhhcc-eEE-EECCE--EEEECCcCCCCceEEEECCCCeEEE
Confidence 34556666654 246678877653211 11111111111 122 23555 66777653 467888876654332
Q ss_pred --EecCCCCCeEEEEecccCCccEEEEEecCC---eEEEEEcCCCceeEEecCCCCcEEEEEEccCCCEEEEeccCCCCC
Q 001477 492 --TFEGHEAPVYSVCPHHKESIQFIFSTAIDG---KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGE 566 (1071)
Q Consensus 492 --~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~---~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~ 566 (1071)
.+.........+.. +|.+.+.|+.++ .+..||.++..-...-..........+..-+|+..+.|+
T Consensus 346 ~~~l~~~r~~~~~~~~----~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~GG------ 415 (480)
T PHA02790 346 MPSLLKPRCNPAVASI----NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVGR------ 415 (480)
T ss_pred CCCCCCCCcccEEEEE----CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEECC------
Confidence 12111111111221 346777777553 466787765443321111111111112223455555543
Q ss_pred CeEEEEeCCCCceeEEeecccccceeEEEEeCCCCEEEEEeCC-----CcEEEEeCCC
Q 001477 567 SHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE-----FQIKFWDMDN 619 (1071)
Q Consensus 567 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~ 619 (1071)
.+.+||..+++-...-.-... ....-+..-+++..+.||.+ ..+..||..+
T Consensus 416 -~~e~ydp~~~~W~~~~~m~~~-r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~ 471 (480)
T PHA02790 416 -NAEFYCESSNTWTLIDDPIYP-RDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNRT 471 (480)
T ss_pred -ceEEecCCCCcEeEcCCCCCC-ccccEEEEECCEEEEECCcCCCcccceEEEEECCC
Confidence 266788876654322111111 11111122355666667643 2345555544
No 450
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.61 E-value=20 Score=41.64 Aligned_cols=219 Identities=10% Similarity=0.093 Sum_probs=102.7
Q ss_pred CeEEEEeecCCCeEEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeEEEECCCCCEEEEEe
Q 001477 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF 427 (1071)
Q Consensus 348 ~V~~~~fsp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~la~~~ 427 (1071)
++-++.-+|..-.=++ +..-.|+|++.. |..+.+ ++-.|. .+..+.||.+..+|+. .
T Consensus 45 GpIAV~r~p~~~~~~~--~a~~~I~If~~s-G~lL~~------------------~~w~~~-~lI~mgWs~~eeLI~v-~ 101 (829)
T KOG2280|consen 45 GPIAVTRSPSKLVPLY--SARPYIRIFNIS-GQLLGR------------------ILWKHG-ELIGMGWSDDEELICV-Q 101 (829)
T ss_pred CceEEEeccccccccc--ccceeEEEEecc-ccchHH------------------HHhcCC-CeeeecccCCceEEEE-e
Confidence 4555666664321112 334467888865 333322 122344 7889999987766654 5
Q ss_pred CCCeEEEEEecCCCcccee-eEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccCCceeEEecC---CCCCeEEE
Q 001477 428 SKHIVHLYTYNPTGELRQH-LEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG---HEAPVYSV 503 (1071)
Q Consensus 428 ~dg~i~iwd~~~~~~~~~~-~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---h~~~v~~i 503 (1071)
.+|++++|++-... +... .........|..+.|..+|= +.-..+|.+.+-+-.....+.++.. ..-+-.|-
T Consensus 102 k~g~v~Vy~~~ge~-ie~~svg~e~~~~~I~ec~~f~~GV----avlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~W 176 (829)
T KOG2280|consen 102 KDGTVHVYGLLGEF-IESNSVGFESQMSDIVECRFFHNGV----AVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCW 176 (829)
T ss_pred ccceEEEeecchhh-hcccccccccccCceeEEEEecCce----EEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcce
Confidence 99999999987532 2110 11122334566666666553 3233344444433111112222221 11111111
Q ss_pred Eeccc-CCccEEEEEe-cCCeEEEEEcCCCce-eEEecCCCCcEEEEEEccCCCEEEEeccCCCCCCeEEEEeCCCCcee
Q 001477 504 CPHHK-ESIQFIFSTA-IDGKIKAWLYDYLGS-RVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIK 580 (1071)
Q Consensus 504 ~~~~~-~~~~~l~s~~-~d~~i~vwd~~~~~~-~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~ 580 (1071)
...+. .....++-.. ..+ ..++-.+.... ...+......+..+..||+.++|+.-.. .|.|.+-+....+..
T Consensus 177 t~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~----~G~i~~vs~D~~~~l 251 (829)
T KOG2280|consen 177 TVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTE----TGKIWVVSIDLSQIL 251 (829)
T ss_pred eEecCCCcceeEEeechhhh-hcccceecccccccccCCCCceEEEEEEcCCcceEEEEec----CCcEEEEecchhhhh
Confidence 11111 1111111111 000 01111111111 1122223456788899999999987764 677888887776666
Q ss_pred EEeecccccceeEEEEeCC
Q 001477 581 RTYSGFRKRSLGVVQFDTT 599 (1071)
Q Consensus 581 ~~~~~~~~~~v~~~~~~~~ 599 (1071)
..+.......-..++|..+
T Consensus 252 ce~~~~~~~~p~qm~Wcgn 270 (829)
T KOG2280|consen 252 CEFNCTDHDPPKQMAWCGN 270 (829)
T ss_pred hccCCCCCCchHhceeecC
Confidence 6665332212223455443
No 451
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=91.31 E-value=0.74 Score=31.61 Aligned_cols=32 Identities=22% Similarity=0.372 Sum_probs=27.3
Q ss_pred CCeEEEEEcCCCC--CEEEEEeCCCeEEEEEccC
Q 001477 882 PAATFLAFHPQDN--NIIAIGMEDSSVQIYNVRV 913 (1071)
Q Consensus 882 ~~i~~l~~sp~~~--~~la~g~~dg~v~vwd~~~ 913 (1071)
+.|.++.|||..+ .+|+.+-.-|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 4688999998555 6999998999999999985
No 452
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=91.25 E-value=24 Score=39.73 Aligned_cols=112 Identities=18% Similarity=0.192 Sum_probs=61.9
Q ss_pred CCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEccCCe--EEEEe----c-CcCCCeeEEEEcCCC------CEEEEEe---
Q 001477 880 PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE--VKTKL----K-GHQNRITGLAFSPTL------NALVSSG--- 943 (1071)
Q Consensus 880 ~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~--~~~~l----~-~h~~~v~~l~~s~d~------~~l~s~~--- 943 (1071)
.-.....|+|.| |+++|++--..|.|++++..++. .+..+ . .-.+....|+++|+- .+|...-
T Consensus 28 GL~~Pw~maflP-DG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~ 106 (454)
T TIGR03606 28 GLNKPWALLWGP-DNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYK 106 (454)
T ss_pred CCCCceEEEEcC-CCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEecc
Confidence 344678899999 88887766556999999866543 22211 1 125668999999884 2333321
Q ss_pred -------CCCcEEEEECCCC--ceee-eeeecCCCCCCCCCCCceEEEEccCCCEEEEEEC
Q 001477 944 -------ADAQLCMWSIDKW--EKLK-SRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHE 994 (1071)
Q Consensus 944 -------~d~~v~vWd~~~~--~~~~-~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d 994 (1071)
....|.-|.+... .... ...+....... ...-..++|.|||+++++..|
T Consensus 107 ~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~--~H~GgrI~FgPDG~LYVs~GD 165 (454)
T TIGR03606 107 NGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGN--DHNGGRLVFGPDGKIYYTIGE 165 (454)
T ss_pred CCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCC--CcCCceEEECCCCcEEEEECC
Confidence 1223444555421 1110 11121111100 123468899999987776433
No 453
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=91.08 E-value=45 Score=41.11 Aligned_cols=188 Identities=12% Similarity=0.123 Sum_probs=104.9
Q ss_pred CCCeEEEEEe---c----CCcEEEEEeCCeEEEEECCC---------------CeEEEEEeC---CCCCeEEEEEcCCCC
Q 001477 840 EESAACIALS---K----NDSYVMSASGGKVSLFNMMT---------------FKVMTMFMS---PPPAATFLAFHPQDN 894 (1071)
Q Consensus 840 ~~~v~~v~~s---~----d~~~la~~~dg~i~vwd~~~---------------~~~~~~~~~---~~~~i~~l~~sp~~~ 894 (1071)
..+|..|+|+ . ..++|++-....+.|+...- ..++..+.. ...+...++|+|.+.
T Consensus 79 ~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~~~ 158 (765)
T PF10214_consen 79 GSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPWDQ 158 (765)
T ss_pred CCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccCcc
Confidence 6788889888 2 23477777777788887211 122333332 123567788888777
Q ss_pred CEEEEEeCCCeEEEEEccCCeEEEEecCcCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeecCCCCCCCCC
Q 001477 895 NIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPL 974 (1071)
Q Consensus 895 ~~la~g~~dg~v~vwd~~~~~~~~~l~~h~~~v~~l~~s~d~~~l~s~~~d~~v~vWd~~~~~~~~~~~~~~~~~~~~~~ 974 (1071)
+.+|+....|...||++...... +.. .. -++....|.| +.|.+. .
T Consensus 159 ~q~AiVD~~G~Wsvw~i~~~~~~-----~~~-~~----------~~~~~~~gsi-~~d~~e---~--------------- 203 (765)
T PF10214_consen 159 RQFAIVDEKGNWSVWDIKGRPKR-----KSS-NL----------RLSRNISGSI-IFDPEE---L--------------- 203 (765)
T ss_pred ceEEEEeccCcEEEEEecccccc-----CCc-ce----------eeccCCCccc-cCCCcc---c---------------
Confidence 78888888888888888211100 000 11 1111222222 122111 0
Q ss_pred CCceEEEEccCCCEEEEEECCeEEEEeCCCCceeecCCCCCCCCCeeEEEEecCC-cEEEEEeCCCeEEEEEcCCC--eE
Q 001477 975 VGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDG-LLVYAGFCDGAIGVFDAETL--RF 1051 (1071)
Q Consensus 975 ~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg-~~l~t~~~Dg~i~vwd~~~~--~~ 1051 (1071)
..-..+.|.++-..|++++...+.++|+.......+.........|..+.-+++. .+++.-+ ...|...++... ..
T Consensus 204 s~w~rI~W~~~~~~lLv~~r~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT-s~eiiw~~~~~~~~~~ 282 (765)
T PF10214_consen 204 SNWKRILWVSDSNRLLVCNRSKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT-SKEIIWLDVKSSSEKL 282 (765)
T ss_pred CcceeeEecCCCCEEEEEcCCceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEe-cCeEEEEEccCCCCCe
Confidence 2235678888888888888888888888443332212222226678888887772 2222222 356777787663 33
Q ss_pred EEEeCCCcccCc
Q 001477 1052 RCRIGPSAYIPT 1063 (1071)
Q Consensus 1052 ~~~~~~~~~~~~ 1063 (1071)
...+...++..+
T Consensus 283 ~~llSwkH~~d~ 294 (765)
T PF10214_consen 283 TRLLSWKHFRDP 294 (765)
T ss_pred eeeeecccccCC
Confidence 334455555555
No 454
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=90.82 E-value=0.84 Score=31.34 Aligned_cols=31 Identities=26% Similarity=0.382 Sum_probs=26.7
Q ss_pred CCeeEEEECCC-C--CEEEEEeCCCeEEEEEecC
Q 001477 409 ISVNRCVWGPD-G--LMLGVAFSKHIVHLYTYNP 439 (1071)
Q Consensus 409 ~~v~~~~~spd-~--~~la~~~~dg~i~iwd~~~ 439 (1071)
+.|.++.|||+ + ++|+.+-..|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 46899999984 4 5999998999999999985
No 455
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=90.77 E-value=35 Score=43.86 Aligned_cols=149 Identities=13% Similarity=0.186 Sum_probs=83.5
Q ss_pred CCCCeEEEEeecCCCeEEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeEEEECCCCCEEE
Q 001477 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1071)
Q Consensus 345 h~~~V~~~~fsp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~la 424 (1071)
|-..++.|.-+|+|+++=+ .|+.++.||..... |..- -.....+++.++-.-||+..|
T Consensus 361 H~A~LTgv~~~~~ge~lRl---Hd~~LY~~d~~~~~---------Wk~~----------~~~~d~~~S~Ls~qgdG~lYA 418 (1774)
T PF11725_consen 361 HIAHLTGVHTDPDGEQLRL---HDDRLYQFDPNTAR---------WKPP----------PDKSDTPFSSLSRQGDGKLYA 418 (1774)
T ss_pred HHHHhhccccCCCCCeEEe---ecCceeeeccccce---------ecCC----------CCcccchhhhhcccCCCceEe
Confidence 3345666667777764322 36777777776543 2210 011233455555555666655
Q ss_pred EEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccCC------ce--eEEecCC
Q 001477 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG------RK--QYTFEGH 496 (1071)
Q Consensus 425 ~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~------~~--~~~~~~h 496 (1071)
=+.+. +-|+..+.... .....+.+...+++|.- .+.++.....+.+|++... ++ .-.+.+.
T Consensus 419 -k~~~~---l~nLSs~~~~~------~~v~~l~sfSv~~~g~v-A~L~~~d~q~~qL~~m~~~~a~~~p~~~~~L~L~dG 487 (1774)
T PF11725_consen 419 -KDDDT---LVNLSSGQMSE------AEVDKLKSFSVAPDGTV-AMLTGKDGQTLQLHDMSPVDAPPTPRKTKTLQLADG 487 (1774)
T ss_pred -cCCCc---eeecCCCCcch------hhhhhcccccccCCCce-eeeecCCCcceeeeccCccccccCccceeeeeccCC
Confidence 21221 33554443211 12235677778899983 3667776777899998753 11 1223333
Q ss_pred CCCeEEEEecccCCccEEEEEecCCeEEEEEcCC
Q 001477 497 EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY 530 (1071)
Q Consensus 497 ~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~ 530 (1071)
.....+|.+++ ..|+.+..+|.++.=++..
T Consensus 488 ~a~A~~VgLs~----drLFvADseGkLYsa~l~~ 517 (1774)
T PF11725_consen 488 KAQAQSVGLSN----DRLFVADSEGKLYSADLPA 517 (1774)
T ss_pred chhhhheeecC----CeEEEEeCCCCEEeccccc
Confidence 44566666654 3688888888887766654
No 456
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=90.70 E-value=16 Score=43.18 Aligned_cols=116 Identities=11% Similarity=0.103 Sum_probs=76.3
Q ss_pred CeeEEEECC--CCCEEEEEeCCCeEEEEEecC-------C----C------ccceeeEeecccCCEEEEEEe--cCCCce
Q 001477 410 SVNRCVWGP--DGLMLGVAFSKHIVHLYTYNP-------T----G------ELRQHLEIDAHVGGVNDIAFA--HPNKQL 468 (1071)
Q Consensus 410 ~v~~~~~sp--d~~~la~~~~dg~i~iwd~~~-------~----~------~~~~~~~~~~h~~~v~~~~~s--~d~~~~ 468 (1071)
.|+.+.... +...|+.|..||.|.+|.+++ . . .++....+ .-...++.+++. ...+
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~-~v~~SaWGLdIh~~~~~r-- 178 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHL-RVGASAWGLDIHDYKKSR-- 178 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEe-ecCCceeEEEEEecCcce--
Confidence 466665544 566899999999999997632 0 0 01111122 234478999998 5555
Q ss_pred EEEEEeCCCcEEEEEccCC--ceeE-EecCCCCCeEEEEecccCC---cc-EEEEEecCCeEEEEEc
Q 001477 469 CIVTCGDDKMIKVWDVVAG--RKQY-TFEGHEAPVYSVCPHHKES---IQ-FIFSTAIDGKIKAWLY 528 (1071)
Q Consensus 469 ~l~s~~~d~~i~iwd~~~~--~~~~-~~~~h~~~v~~i~~~~~~~---~~-~l~s~~~d~~i~vwd~ 528 (1071)
+||.++....|.||-.... +... .-..|...|.+|+|.++.. |. .+++++-.|.+.+|++
T Consensus 179 lIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 179 LIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 7888888888888755432 1111 1112667899999987652 22 7888999999999887
No 457
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=90.67 E-value=32 Score=38.32 Aligned_cols=143 Identities=8% Similarity=-0.023 Sum_probs=85.5
Q ss_pred ccEEEEEecCCeEEEEEcCCCce----eEEecCCCCcEEEEEEcc-----CCCEEEEeccCCCCCCeEEEEeCCC--Cc-
Q 001477 511 IQFIFSTAIDGKIKAWLYDYLGS----RVDYDAPGNWCTMMAYSA-----DGTRLFSCGTSKEGESHLVEWNESE--GA- 578 (1071)
Q Consensus 511 ~~~l~s~~~d~~i~vwd~~~~~~----~~~~~~~~~~i~~~~~s~-----~~~~l~~~~~~~d~~~~i~iwd~~~--~~- 578 (1071)
.+.++.||..|.+++|+....+. ...-..-..+|..+..-. +...|+.-. ...+.+|.+.. |.
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLh-----P~kl~vY~v~~~~g~~ 111 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLH-----PRKLSVYSVSLVDGTV 111 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEec-----CCEEEEEEEEecCCCc
Confidence 36899999999999998754432 111122334666665432 334555543 45577777631 11
Q ss_pred ------eeEEeecc-cccceeEEEEeCC-----CCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCE
Q 001477 579 ------IKRTYSGF-RKRSLGVVQFDTT-----RNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSL 646 (1071)
Q Consensus 579 ------~~~~~~~~-~~~~v~~~~~~~~-----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 646 (1071)
.+.....| -......++..|- ..++..-+.||.+.+++-+.......++.. --...+.|.+....
T Consensus 112 ~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~---llPgPl~Y~~~tDs 188 (418)
T PF14727_consen 112 EHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDF---LLPGPLCYCPRTDS 188 (418)
T ss_pred ccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCC---CCCcCeEEeecCCE
Confidence 11222222 1112333444332 256777899999999998765444444321 12356888898889
Q ss_pred EEEEeCCCcEEEEEc
Q 001477 647 LAVTTSDNGIKILAN 661 (1071)
Q Consensus 647 l~~~~~dg~v~iw~~ 661 (1071)
+++++.+..+.-|..
T Consensus 189 fvt~sss~~l~~Yky 203 (418)
T PF14727_consen 189 FVTASSSWTLECYKY 203 (418)
T ss_pred EEEecCceeEEEecH
Confidence 999999988888864
No 458
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=90.56 E-value=27 Score=37.34 Aligned_cols=208 Identities=11% Similarity=-0.043 Sum_probs=103.0
Q ss_pred CCCeEEEEEecCCcEEEEEeCCe--EEEEECCCCeE---------------EEEEeCCCCCeEEEEEcCCCCCEEEEEeC
Q 001477 840 EESAACIALSKNDSYVMSASGGK--VSLFNMMTFKV---------------MTMFMSPPPAATFLAFHPQDNNIIAIGME 902 (1071)
Q Consensus 840 ~~~v~~v~~s~d~~~la~~~dg~--i~vwd~~~~~~---------------~~~~~~~~~~i~~l~~sp~~~~~la~g~~ 902 (1071)
...|+++.+.+....|++-++.. ++++++..... ....-++.......+........++++..
T Consensus 42 ~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~ 121 (302)
T smart00036 42 RRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVIRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVAL 121 (302)
T ss_pred cCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCccccccccceEeCCcCCceEEEEEEcCCCcEEEEEEc
Confidence 67899999999999888888665 99999853321 01122344333334443312223344555
Q ss_pred CCeEEEEEccCC----eEEEEe---c-CcCCCeeEEEEcCC--CCEEEEEeCCCcEEEEECCC--CceeeeeeecCCCCC
Q 001477 903 DSSVQIYNVRVD----EVKTKL---K-GHQNRITGLAFSPT--LNALVSSGADAQLCMWSIDK--WEKLKSRFIQAPAGR 970 (1071)
Q Consensus 903 dg~v~vwd~~~~----~~~~~l---~-~h~~~v~~l~~s~d--~~~l~s~~~d~~v~vWd~~~--~~~~~~~~~~~~~~~ 970 (1071)
..+|.++..... ...+.+ . --..++..+..+++ ...+..|+..+-..++++.. ...-...........
T Consensus 122 ~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~lcvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~ 201 (302)
T smart00036 122 QSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGICIGSDKGGGDVVQFHESLVSKEDLSLPFLSEET 201 (302)
T ss_pred CCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEEEEEEcCCCCeEEEEeeccccccccccccccccc
Confidence 667777654322 111110 0 01123444443433 34555555432344555532 110000000000000
Q ss_pred CCCCCCceEEEEccCCCEEEEEECCeEEEEeCCC-Cceeec-CCCCCCCCCeeEEEEecCCcEEEEEeCCCeEEEEEcCC
Q 001477 971 QSPLVGETKVQFHNDQTHLLVVHESQISVYDSKL-ECSRSW-SPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAET 1048 (1071)
Q Consensus 971 ~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~-~~~~~~-~~~~~h~~~v~~~~~s~dg~~l~t~~~Dg~i~vwd~~~ 1048 (1071)
.....++..-+++.+|++ .|....+-|..+ ...+.. ... ...+.++++.. .+|++-+ +..|.++++.+
T Consensus 202 ---~~~p~~i~~l~~~e~Llc-~~~~~v~Vn~~G~~~~r~~~l~w---~~~p~~~~~~~--pyll~~~-~~~ievr~l~~ 271 (302)
T smart00036 202 ---SLKPISVVQVPRDEFLLC-YDEFGVFVNLYGKRRSRNPILHW---EFMPESFAYHS--PYLLAFH-DNGIEIRSIKT 271 (302)
T ss_pred ---ccCceEEEEECCCeEEEE-ECcEEEEEeCCCCccccceEEEc---CCcccEEEEEC--CEEEEEc-CCcEEEEECCC
Confidence 002333444445555444 444445555555 222211 112 45567777763 5777555 55699999999
Q ss_pred CeEEEEeCC
Q 001477 1049 LRFRCRIGP 1057 (1071)
Q Consensus 1049 ~~~~~~~~~ 1057 (1071)
++++..+..
T Consensus 272 ~~l~q~i~~ 280 (302)
T smart00036 272 GELLQELAD 280 (302)
T ss_pred CceEEEEec
Confidence 999888753
No 459
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=90.55 E-value=21 Score=36.10 Aligned_cols=230 Identities=10% Similarity=0.041 Sum_probs=132.7
Q ss_pred CeeEEEECCCCCEEEEEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccCCce
Q 001477 410 SVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK 489 (1071)
Q Consensus 410 ~v~~~~~spd~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~ 489 (1071)
.-..++-+|||..-.++...+.|--.|..+|+...- .+ +....-..+..-|||. .-++-+.. -|.-.|-++.+.
T Consensus 63 ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~y--pL-g~Ga~Phgiv~gpdg~--~Witd~~~-aI~R~dpkt~ev 136 (353)
T COG4257 63 APFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETY--PL-GSGASPHGIVVGPDGS--AWITDTGL-AIGRLDPKTLEV 136 (353)
T ss_pred CccccccCCCCceEEecCccccceecCCCCCceEEE--ec-CCCCCCceEEECCCCC--eeEecCcc-eeEEecCcccce
Confidence 345678888998888887777787788888764321 11 3333445667778877 34433322 455555545443
Q ss_pred eE-Ee--cCCCCCeEEEEecccCCccEEEEEec---------CCeEEEEEcCCCceeEEecCCCCcEEEEEEccCCCEEE
Q 001477 490 QY-TF--EGHEAPVYSVCPHHKESIQFIFSTAI---------DGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLF 557 (1071)
Q Consensus 490 ~~-~~--~~h~~~v~~i~~~~~~~~~~l~s~~~---------d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 557 (1071)
.. .+ ...........|.+.+ ++-+++.. .+.|++|+.. ....-+.++..|||..-+
T Consensus 137 t~f~lp~~~a~~nlet~vfD~~G--~lWFt~q~G~yGrLdPa~~~i~vfpaP----------qG~gpyGi~atpdGsvwy 204 (353)
T COG4257 137 TRFPLPLEHADANLETAVFDPWG--NLWFTGQIGAYGRLDPARNVISVFPAP----------QGGGPYGICATPDGSVWY 204 (353)
T ss_pred EEeecccccCCCcccceeeCCCc--cEEEeeccccceecCcccCceeeeccC----------CCCCCcceEECCCCcEEE
Confidence 21 11 1234556666776543 55555542 1234444332 334567788999998777
Q ss_pred EeccCCCCCCeEEEEeCCCCceeEEeeccc--ccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCc
Q 001477 558 SCGTSKEGESHLVEWNESEGAIKRTYSGFR--KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPAS 635 (1071)
Q Consensus 558 ~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 635 (1071)
+.-. .+.|-..|..++... .+.... ....+.+.-+|.|..-++....+.+..+|..+.. -......+....-
T Consensus 205 asla----gnaiaridp~~~~ae-v~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s-W~eypLPgs~arp 278 (353)
T COG4257 205 ASLA----GNAIARIDPFAGHAE-VVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS-WIEYPLPGSKARP 278 (353)
T ss_pred Eecc----ccceEEcccccCCcc-eecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc-ceeeeCCCCCCCc
Confidence 6432 445777777666322 221111 1134556667888888887788889999887654 4445555544455
Q ss_pred ceEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 001477 636 PRLRFNKEGSLLAVTTSDNGIKILANSD 663 (1071)
Q Consensus 636 ~~~~~s~~~~~l~~~~~dg~v~iw~~~~ 663 (1071)
.++.....++.-.+--..|.|.-+|..+
T Consensus 279 ys~rVD~~grVW~sea~agai~rfdpet 306 (353)
T COG4257 279 YSMRVDRHGRVWLSEADAGAIGRFDPET 306 (353)
T ss_pred ceeeeccCCcEEeeccccCceeecCccc
Confidence 6666666665555444455555555443
No 460
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=90.45 E-value=5.7 Score=47.59 Aligned_cols=71 Identities=14% Similarity=0.248 Sum_probs=47.8
Q ss_pred CeEEEEEcCCCCCEEEEEeCCCeEEEEEccC----------CeE--E-EEe--------cCcCCCeeEEEEcCC---CCE
Q 001477 883 AATFLAFHPQDNNIIAIGMEDSSVQIYNVRV----------DEV--K-TKL--------KGHQNRITGLAFSPT---LNA 938 (1071)
Q Consensus 883 ~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~----------~~~--~-~~l--------~~h~~~v~~l~~s~d---~~~ 938 (1071)
.|..+.++| +|++||..+..| |.|-.+.. |+. . .++ ..+...|..+.|+|. +..
T Consensus 86 ~v~~i~~n~-~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 86 EVHQISLNP-TGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eEEEEEECC-CCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 588899999 899999888766 44444431 111 1 111 133456888888886 467
Q ss_pred EEEEeCCCcEEEEECCC
Q 001477 939 LVSSGADAQLCMWSIDK 955 (1071)
Q Consensus 939 l~s~~~d~~v~vWd~~~ 955 (1071)
|+.-..|+++|+||+..
T Consensus 164 l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISD 180 (717)
T ss_pred EEEEecCCEEEEEecCC
Confidence 77788888888888865
No 461
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.34 E-value=2.8 Score=45.03 Aligned_cols=123 Identities=12% Similarity=0.175 Sum_probs=79.9
Q ss_pred CCCCeEEEEeecCCCeEEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeEEEECCCCCEEE
Q 001477 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1071)
Q Consensus 345 h~~~V~~~~fsp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd~~~la 424 (1071)
..++|.++.||+|.+ +||+--.+.+|.+.+....+..... ....+..+..|....|+.+ .-+|
T Consensus 65 d~G~I~SIkFSlDnk-ilAVQR~~~~v~f~nf~~d~~~l~~---------------~~~ck~k~~~IlGF~W~~s-~e~A 127 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNK-ILAVQRTSKTVDFCNFIPDNSQLEY---------------TQECKTKNANILGFCWTSS-TEIA 127 (657)
T ss_pred CCCceeEEEeccCcc-eEEEEecCceEEEEecCCCchhhHH---------------HHHhccCcceeEEEEEecC-eeEE
Confidence 467999999999998 8899889999999998543322110 0012234556889999866 6666
Q ss_pred EEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccCC
Q 001477 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG 487 (1071)
Q Consensus 425 ~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~ 487 (1071)
..+..| +.+|.+...+ +.....+.|...|..-.|.++..-.+|+|+-..+++.=+-++++
T Consensus 128 ~i~~~G-~e~y~v~pek--rslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~ 187 (657)
T KOG2377|consen 128 FITDQG-IEFYQVLPEK--RSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG 187 (657)
T ss_pred EEecCC-eEEEEEchhh--hhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence 665555 7777765432 22224456888899999999887433344434444444444443
No 462
>PRK13613 lipoprotein LpqB; Provisional
Probab=90.26 E-value=33 Score=40.38 Aligned_cols=193 Identities=12% Similarity=0.020 Sum_probs=102.1
Q ss_pred CeEEEEEecCCcEEEEEe-CC-eEEEEECCCCeE----E-EEEeCCCCCeEEEEEcCCCCCEEEE-EeCCC--eEEEEEc
Q 001477 842 SAACIALSKNDSYVMSAS-GG-KVSLFNMMTFKV----M-TMFMSPPPAATFLAFHPQDNNIIAI-GMEDS--SVQIYNV 911 (1071)
Q Consensus 842 ~v~~v~~s~d~~~la~~~-dg-~i~vwd~~~~~~----~-~~~~~~~~~i~~l~~sp~~~~~la~-g~~dg--~v~vwd~ 911 (1071)
.+.+++.|+++..+|..+ ++ .+.+..+..+.. . ..+. ....+.-.|.+ ++.+-.+ +..++ .+++..-
T Consensus 364 ~~~s~avS~~g~~~A~v~~~~~~l~vg~~~~~~~~~~~~~~~~~--~~~Lt~PS~d~-~g~vWtvd~~~~~~~vl~v~~~ 440 (599)
T PRK13613 364 PLRRVAVSRDESRAAGISADGDSVYVGSLTPGASIGVHSWGVTA--DGRLTSPSWDG-RGDLWVVDRDPADPRLLWLLQG 440 (599)
T ss_pred CccceEEcCCCceEEEEcCCCcEEEEeccCCCCccccccceeec--cCcccCCcCcC-CCCEEEecCCCCCceEEEEEcC
Confidence 678899999999988877 44 466655433222 1 1122 23466667777 4433322 11122 2555543
Q ss_pred cCCeEEEE-ecCcCC-CeeEEEEcCCCCEEEEEeC---CCcEEEEECCCCceeeeeeecCCCCCCCCCCCceEEEEccCC
Q 001477 912 RVDEVKTK-LKGHQN-RITGLAFSPTLNALVSSGA---DAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQ 986 (1071)
Q Consensus 912 ~~~~~~~~-l~~h~~-~v~~l~~s~d~~~l~s~~~---d~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg 986 (1071)
+++.... .....+ .|+.+..|+||.+++.... .++|.+=-+.....-. ..+..+..-......+.+++|..++
T Consensus 441 -~G~~~~V~~~~l~g~~I~~lrvSrDG~RvAvv~~~~g~~~v~va~V~R~~~G~-~~l~~~~~l~~~l~~v~~~~W~~~~ 518 (599)
T PRK13613 441 -DGEPVEVRTPELDGHRVVAVRVARDGVRVALIVEKDGRRSLQIGRIVRDAKAV-VSVEEFRSLAPELEDVTDMSWAGDS 518 (599)
T ss_pred -CCcEEEeeccccCCCEeEEEEECCCccEEEEEEecCCCcEEEEEEEEeCCCCc-EEeeccEEeccCCCccceeEEcCCC
Confidence 4443211 112223 7999999999998776543 3556554443311110 1111111000111458999999999
Q ss_pred CEEEEE--ECCeEEEEeC--CCCceeecCCCCCCCCCeeEEEEecCCc-EEEEEeCCCeE
Q 001477 987 THLLVV--HESQISVYDS--KLECSRSWSPKDALPAPISSAIYSCDGL-LVYAGFCDGAI 1041 (1071)
Q Consensus 987 ~~l~~~--~d~~i~vwd~--~~~~~~~~~~~~~h~~~v~~~~~s~dg~-~l~t~~~Dg~i 1041 (1071)
.+++.+ ..+...+|.+ .+........ +.-..+..++-..+.+ .++.+..++.|
T Consensus 519 sL~Vlg~~~~~~~~v~~v~vdG~~~~~~~~--~~v~~~~~ia~~~~~~~~~v~~~~~~~v 576 (599)
T PRK13613 519 QLVVLGREEGGVQQARYVQVDGSTPPASAP--AAVTGVESITASEDERLPLVAGTSEDGI 576 (599)
T ss_pred EEEEEeccCCCCcceEEEecCCcCcccccc--cCCCCeeEEEecCCCCceEEEEecCCCe
Confidence 988755 2334445555 4443321111 1245577777777776 45553556654
No 463
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=90.07 E-value=32 Score=38.25 Aligned_cols=109 Identities=10% Similarity=-0.026 Sum_probs=64.6
Q ss_pred EecCCcEEEEEeCCeEEEEECCCCeEEEEEeCCC--CCeEEEEEcCCCCCEEEEEeCCCeEEEEEccCCeEEEEecCcC-
Q 001477 848 LSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPP--PAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQ- 924 (1071)
Q Consensus 848 ~s~d~~~la~~~dg~i~vwd~~~~~~~~~~~~~~--~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~- 924 (1071)
..-|++..+...+|.|.-.|..+++.+.....-. ..+..-.+.. +|+ |.+++.+|.++.+|..+|+.+.......
T Consensus 65 ~~~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~-~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~ 142 (370)
T COG1520 65 ADGDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGS-DGK-IYVGSWDGKLYALDASTGTLVWSRNVGGS 142 (370)
T ss_pred EeeCCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEe-CCe-EEEecccceEEEEECCCCcEEEEEecCCC
Confidence 3346666666568888888888887665433221 2333333333 555 6778899999999998998887776554
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcee
Q 001477 925 NRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKL 959 (1071)
Q Consensus 925 ~~v~~l~~s~d~~~l~s~~~d~~v~vWd~~~~~~~ 959 (1071)
-.+..-..-.++.. ...+.++.+.-.+..+++..
T Consensus 143 ~~~~~~~v~~~~~v-~~~s~~g~~~al~~~tG~~~ 176 (370)
T COG1520 143 PYYASPPVVGDGTV-YVGTDDGHLYALNADTGTLK 176 (370)
T ss_pred eEEecCcEEcCcEE-EEecCCCeEEEEEccCCcEE
Confidence 11122222223332 22335666666666666654
No 464
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=89.93 E-value=30 Score=38.93 Aligned_cols=278 Identities=15% Similarity=0.102 Sum_probs=132.5
Q ss_pred eecCCCCeEEEEeecCCCeEEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeEEEECCCCC
Q 001477 342 TLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGL 421 (1071)
Q Consensus 342 ~~~h~~~V~~~~fsp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd~~ 421 (1071)
.+....+|.++.|.-.|. + -.|+.|| +..||..+++.+.... .....+|..+.-+-.|+
T Consensus 160 ~ll~d~~V~aLv~D~~g~-l-WvgT~dG-L~~fd~~~gkalql~s------------------~~~dk~I~al~~d~qg~ 218 (671)
T COG3292 160 PLLKDTPVVALVFDANGR-L-WVGTPDG-LSYFDAGRGKALQLAS------------------PPLDKAINALIADVQGR 218 (671)
T ss_pred ccccCccceeeeeeccCc-E-EEecCCc-ceEEccccceEEEcCC------------------CcchhhHHHHHHHhcCc
Confidence 333567899999999997 3 4577666 5567877776554210 01123455555554554
Q ss_pred EEEEEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccCCceeE-EecCC--CC
Q 001477 422 MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY-TFEGH--EA 498 (1071)
Q Consensus 422 ~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~h--~~ 498 (1071)
|.+|+.+| |.+.+..+.+....-.. -..+.|..+.=..+|. +=.|+..|..+. ....+.... ..+.| ..
T Consensus 219 -LWVGTdqG-v~~~e~~G~~~sn~~~~--lp~~~I~ll~qD~qG~---lWiGTenGl~r~-~l~rq~Lq~~~~~~~l~~S 290 (671)
T COG3292 219 -LWVGTDQG-VYLQEAEGWRASNWGPM--LPSGNILLLVQDAQGE---LWIGTENGLWRT-RLPRQGLQIPLSKMHLGVS 290 (671)
T ss_pred -EEEEeccc-eEEEchhhccccccCCC--CcchheeeeecccCCC---EEEeecccceeE-ecCCCCccccccccCCccc
Confidence 55676666 67766665221110000 1122344443333443 344554443322 222222211 11112 23
Q ss_pred CeEEEEecccCCccEEEEEecCCeEEEEEcCCCceeEEecCCCCcEEEEEEcc--CCCEEEEeccCCCCCCeEEEEeCCC
Q 001477 499 PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSA--DGTRLFSCGTSKEGESHLVEWNESE 576 (1071)
Q Consensus 499 ~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~--~~~~l~~~~~~~d~~~~i~iwd~~~ 576 (1071)
.|.++.... + .-+-+++.++.+++-+-+-..........+..+...+.+| .+..+-... ..+.+.+-+-.+
T Consensus 291 ~vnsL~~D~--d-GsLWv~t~~giv~~~~a~w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~n----s~g~L~van~st 363 (671)
T COG3292 291 TVNSLWLDT--D-GSLWVGTYGGIVRYLTADWKRMAVINDSDGGVSQYEAVAPALLSWGVRQLN----SIGELMVANGST 363 (671)
T ss_pred cccceeecc--C-CCEeeeccCceEEEecchhhheeeeecCCCchhhhhccCchhcccceeecc----ccceEEEecCCC
Confidence 344444332 3 2466677776666443221111111111111111111112 111111111 122355555566
Q ss_pred CceeEEeecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCC-CceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCc
Q 001477 577 GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN-MNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNG 655 (1071)
Q Consensus 577 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 655 (1071)
|..+..........|+..++..++. +-.++...-+..|+..+ +.......+. ....|..+.=.|+++ |..|+.+|.
T Consensus 364 G~~v~sv~q~Rg~nit~~~~d~~g~-lWlgs~q~GLsrl~n~n~~avlde~agl-~ss~V~aived~dns-LWIGTs~Gl 440 (671)
T COG3292 364 GELVRSVHQLRGMNITTTLEDSRGR-LWLGSMQNGLSRLDNKNEWAVLDEDAGL-PSSEVSAIVEDPDNS-LWIGTSGGL 440 (671)
T ss_pred CcEEEEeeeccccccchhhhccCCc-EEEEecccchhhhccCCcccccccccCC-cccceeeeeecCCCC-EEEeccCCe
Confidence 7766665554444677777777544 44455443455666665 3333333222 224677777788887 777888887
Q ss_pred EEE
Q 001477 656 IKI 658 (1071)
Q Consensus 656 v~i 658 (1071)
++.
T Consensus 441 vk~ 443 (671)
T COG3292 441 VKR 443 (671)
T ss_pred Eec
Confidence 653
No 465
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.73 E-value=1.9 Score=52.79 Aligned_cols=154 Identities=12% Similarity=0.148 Sum_probs=95.7
Q ss_pred eCCCeEEEEEccCCeEEEEecCcCCCeeEEEEc--------CCCCEEEEEeCCCcEEEEECCCCceeeeee--ecCCCCC
Q 001477 901 MEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFS--------PTLNALVSSGADAQLCMWSIDKWEKLKSRF--IQAPAGR 970 (1071)
Q Consensus 901 ~~dg~v~vwd~~~~~~~~~l~~h~~~v~~l~~s--------~d~~~l~s~~~d~~v~vWd~~~~~~~~~~~--~~~~~~~ 970 (1071)
+-|+.+.+|++.++.....+.+-+..|..+..- |+=+++...+.--.|.++-+.-.+...... .....-
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i- 174 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKI- 174 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceee-
Confidence 458899999999977777777777777766542 233444444445557777655433221110 010000
Q ss_pred CCCCCCceEEEEccCCCEEEEEECCeEE--EEeC-C---CC-cee-------------ecCCC-CCCCCCeeEEEEecCC
Q 001477 971 QSPLVGETKVQFHNDQTHLLVVHESQIS--VYDS-K---LE-CSR-------------SWSPK-DALPAPISSAIYSCDG 1029 (1071)
Q Consensus 971 ~~~~~~v~~~~~s~dg~~l~~~~d~~i~--vwd~-~---~~-~~~-------------~~~~~-~~h~~~v~~~~~s~dg 1029 (1071)
......|+++....+|+.+.+|.||.|+ +|.. + ++ +.+ .+... ..+..+|..+++....
T Consensus 175 ~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR 254 (1311)
T KOG1900|consen 175 SVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSR 254 (1311)
T ss_pred ecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecccc
Confidence 0011457888889999999999988543 2222 1 11 111 11111 2457799999999888
Q ss_pred cEEEEEeCCCeEEEEEcCC-CeEEEEe
Q 001477 1030 LLVYAGFCDGAIGVFDAET-LRFRCRI 1055 (1071)
Q Consensus 1030 ~~l~t~~~Dg~i~vwd~~~-~~~~~~~ 1055 (1071)
..+.+-++.|+|.+||+.. |....++
T Consensus 255 ~IlY~lsek~~v~~Y~i~~~G~~~~r~ 281 (1311)
T KOG1900|consen 255 NILYVLSEKGTVSAYDIGGNGLGGPRF 281 (1311)
T ss_pred ceeeeeccCceEEEEEccCCCccceee
Confidence 8999999999999999976 6655444
No 466
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=89.71 E-value=20 Score=34.61 Aligned_cols=101 Identities=16% Similarity=0.066 Sum_probs=57.7
Q ss_pred CCCEEEEeccCCCCCCeEEEEeCCCCceeEEeecccccceeEEEEeCCCCEEEEE-eCCCcEEEEeCCCCceeEEEecCC
Q 001477 552 DGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAA-GDEFQIKFWDMDNMNMLTTVDADG 630 (1071)
Q Consensus 552 ~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~ 630 (1071)
+|.++.+.+. -+...|++||+.+|+.+.+-.-... .+..=-...-+.++..- =.+|.-..+|.++.+.+..+...+
T Consensus 55 ~g~i~esTG~--yg~S~ir~~~L~~gq~~~s~~l~~~-~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~G 131 (262)
T COG3823 55 DGHILESTGL--YGFSKIRVSDLTTGQEIFSEKLAPD-TVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEG 131 (262)
T ss_pred CCEEEEeccc--cccceeEEEeccCceEEEEeecCCc-cccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCC
Confidence 4555555554 3577799999999988766544321 22211122224444443 367888889998888887776543
Q ss_pred CCCCcceEEEcCCCCEEEEEeCCCcEEEEE
Q 001477 631 GLPASPRLRFNKEGSLLAVTTSDNGIKILA 660 (1071)
Q Consensus 631 ~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~ 660 (1071)
. =+.++ .|+.-|+.+....+++.-|
T Consensus 132 e---GWgLt--~d~~~LimsdGsatL~frd 156 (262)
T COG3823 132 E---GWGLT--SDDKNLIMSDGSATLQFRD 156 (262)
T ss_pred c---ceeee--cCCcceEeeCCceEEEecC
Confidence 2 13333 3455555554444555443
No 467
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=89.57 E-value=7.2 Score=42.66 Aligned_cols=154 Identities=13% Similarity=0.079 Sum_probs=91.7
Q ss_pred CCCEEE-EEeCCCeEEEEEccCCeEEEEecCcCCCeeEEEEcCCC--------CEEEEEeCCCcEEEEECC-CCceeeee
Q 001477 893 DNNIIA-IGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTL--------NALVSSGADAQLCMWSID-KWEKLKSR 962 (1071)
Q Consensus 893 ~~~~la-~g~~dg~v~vwd~~~~~~~~~l~~h~~~v~~l~~s~d~--------~~l~s~~~d~~v~vWd~~-~~~~~~~~ 962 (1071)
+..+|. .|.....++--|++-|+.+..+.-|... -+.|.|+. +.|+-.|..+ |.--|.+ .|..+...
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~s-vFrIDPR~~gNKi~v~ 554 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYS-VFRIDPRARGNKIKVV 554 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccc-eEEecccccCCceeee
Confidence 455444 4555667888899999999999988775 46777753 3455444443 4333332 22222211
Q ss_pred eecCCCCCCCCCCCceEEEEccCCCEEEE-EECCeEEEEeCCCCceeecCCCCCCCCCeeEEEEecCCcEEEEEeCCCeE
Q 001477 963 FIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAI 1041 (1071)
Q Consensus 963 ~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~i~vwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~t~~~Dg~i 1041 (1071)
-.....+. ....+.+- ....|+|+ +..|.|++||--+..-....+.- ...|..+..+.+|+++++.+ ...+
T Consensus 555 esKdY~tK----n~Fss~~t-TesGyIa~as~kGDirLyDRig~rAKtalP~l--G~aIk~idvta~Gk~ilaTC-k~yl 626 (776)
T COG5167 555 ESKDYKTK----NKFSSGMT-TESGYIAAASRKGDIRLYDRIGKRAKTALPGL--GDAIKHIDVTANGKHILATC-KNYL 626 (776)
T ss_pred eehhcccc----cccccccc-ccCceEEEecCCCceeeehhhcchhhhcCccc--ccceeeeEeecCCcEEEEee-cceE
Confidence 11111111 11122222 23446666 56789999997444444444433 77899999999999988665 5567
Q ss_pred EEEEc--CCCeEEEEeCC
Q 001477 1042 GVFDA--ETLRFRCRIGP 1057 (1071)
Q Consensus 1042 ~vwd~--~~~~~~~~~~~ 1057 (1071)
.+-|+ .-|+...++..
T Consensus 627 lL~d~~ik~g~~aGr~GF 644 (776)
T COG5167 627 LLTDVPIKYGQPAGRDGF 644 (776)
T ss_pred EEEecccccCCccccchh
Confidence 77776 45666666643
No 468
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.56 E-value=4.6 Score=49.72 Aligned_cols=156 Identities=14% Similarity=0.203 Sum_probs=89.8
Q ss_pred CeEEEEeecCCCeEEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhhhcccCCCCeeEEEE--------CCC
Q 001477 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW--------GPD 419 (1071)
Q Consensus 348 ~V~~~~fsp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~--------spd 419 (1071)
.-+.+-+-|.=.+.-+ +.|+.+.+|+.+++..... +.+-+..|..|.. -|.
T Consensus 80 ~~~~mGiFpeI~RaWi--TiDn~L~lWny~~~~e~~~-------------------~d~~shtIl~V~LvkPkpgvFv~~ 138 (1311)
T KOG1900|consen 80 CKTDMGIFPEIGRAWI--TIDNNLFLWNYESDNELAE-------------------YDGLSHTILKVGLVKPKPGVFVPE 138 (1311)
T ss_pred eeeeeccchhhcceEE--EeCCeEEEEEcCCCCcccc-------------------ccchhhhheeeeeecCCCCcchhh
Confidence 3444555554333444 3488999999998654432 3334444554443 233
Q ss_pred CCEEEEEeCCCeEEEEEecCCCcccee------eEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEcc----CC--
Q 001477 420 GLMLGVAFSKHIVHLYTYNPTGELRQH------LEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV----AG-- 487 (1071)
Q Consensus 420 ~~~la~~~~dg~i~iwd~~~~~~~~~~------~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~----~~-- 487 (1071)
=+++.+-..--.|.++-+.-.+..... ..+......|+|+....+|+ +++ +|.|| .+|.+. +|
T Consensus 139 IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGR--IF~-~G~dg--~lyEl~Yq~~~gWf 213 (1311)
T KOG1900|consen 139 IQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGR--IFF-AGRDG--NLYELVYQAEDGWF 213 (1311)
T ss_pred hheeEEecccceEEEEEEEeccccCcccccccceeeecCCceEEEEEeccCCc--EEE-eecCC--CEEEEEEeccCchh
Confidence 344444444555667655432221111 12222355789999888887 444 55566 455432 11
Q ss_pred -c-e----------------eEEec-CCCCCeEEEEecccCCccEEEEEecCCeEEEEEcCCC
Q 001477 488 -R-K----------------QYTFE-GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL 531 (1071)
Q Consensus 488 -~-~----------------~~~~~-~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~ 531 (1071)
+ + +-.+. .+..+|..+.+.... +.+.+-+..|+|.+||+...
T Consensus 214 ~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR--~IlY~lsek~~v~~Y~i~~~ 274 (1311)
T KOG1900|consen 214 GSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSR--NILYVLSEKGTVSAYDIGGN 274 (1311)
T ss_pred hcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecccc--ceeeeeccCceEEEEEccCC
Confidence 1 1 11222 467799999987654 79999999999999998763
No 469
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=89.47 E-value=1.6 Score=43.82 Aligned_cols=78 Identities=13% Similarity=0.188 Sum_probs=55.7
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCceeeee-ee-cCCCCC----CCCCCCceEEEEccCCCEEEEEECCeEEEEeCCCC
Q 001477 932 FSPTLNALVSSGADAQLCMWSIDKWEKLKSR-FI-QAPAGR----QSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLE 1005 (1071)
Q Consensus 932 ~s~d~~~l~s~~~d~~v~vWd~~~~~~~~~~-~~-~~~~~~----~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~ 1005 (1071)
+..++.+|++...+|.+++||+.+++.+-.. .+ ...... ......|..+.++.+|.-+++-++|..+.|+.+..
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L~ 97 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDLG 97 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccccc
Confidence 4457889999999999999999998765332 11 111100 01226789999999999998888889999998665
Q ss_pred ceee
Q 001477 1006 CSRS 1009 (1071)
Q Consensus 1006 ~~~~ 1009 (1071)
+-..
T Consensus 98 ~W~~ 101 (219)
T PF07569_consen 98 CWIR 101 (219)
T ss_pred eeEE
Confidence 5444
No 470
>PRK13615 lipoprotein LpqB; Provisional
Probab=89.27 E-value=26 Score=40.57 Aligned_cols=151 Identities=8% Similarity=-0.054 Sum_probs=91.2
Q ss_pred EEEEEcCCCCCEEEEEeCCCeEEEEEccCCeEEEEecCcCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCC-Cceeeeee
Q 001477 885 TFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK-WEKLKSRF 963 (1071)
Q Consensus 885 ~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~~~v~~l~~s~d~~~l~s~~~d~~v~vWd~~~-~~~~~~~~ 963 (1071)
.+++.++ ++..+|....++.++++... +.....+.+ ..++.-.|.++| ++-++..+...++..... ++... ..
T Consensus 337 ~s~avS~-dg~~~A~v~~~~~l~vg~~~-~~~~~~~~~--~~Lt~PS~d~~g-~vWtv~~g~~~~l~~~~~~G~~~~-v~ 410 (557)
T PRK13615 337 DAATLSA-DGRQAAVRNASGVWSVGDGD-RDAVLLDTR--PGLVAPSLDAQG-YVWSTPASDPRGLVAWGPDGVGHP-VA 410 (557)
T ss_pred ccceEcC-CCceEEEEcCCceEEEecCC-CcceeeccC--CccccCcCcCCC-CEEEEeCCCceEEEEecCCCceEE-ee
Confidence 7889999 88888888878888888665 222233332 347778888888 555554444455554433 33221 11
Q ss_pred ecCCCCCCCCCCCceEEEEccCCCEEEEEE----CCeEEEEeC--CCC---ce-eec-CCCCCCCCCeeEEEEecCCcEE
Q 001477 964 IQAPAGRQSPLVGETKVQFHNDQTHLLVVH----ESQISVYDS--KLE---CS-RSW-SPKDALPAPISSAIYSCDGLLV 1032 (1071)
Q Consensus 964 ~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~----d~~i~vwd~--~~~---~~-~~~-~~~~~h~~~v~~~~~s~dg~~l 1032 (1071)
..... ...|+.+..|+||..++.-. .+.|.|--+ .+. .+ ... ..... ...+.++.|..++.++
T Consensus 411 v~~~~-----~~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~~P~~L~~~p~~l~~~-l~~v~sl~W~~~~~la 484 (557)
T PRK13615 411 VSWTA-----TGRVVSLEVARDGARVLVQLETGAGPQLLVASIVRDGGVPTSLTTTPLELLAS-PGTPLDATWVDELDVA 484 (557)
T ss_pred ccccC-----CCeeEEEEeCCCccEEEEEEecCCCCEEEEEEEEeCCCcceEeeeccEEcccC-cCcceeeEEcCCCEEE
Confidence 11111 15799999999999888732 366776555 222 12 111 11112 4488999999999986
Q ss_pred EEEe---CCCeEEEEEcC
Q 001477 1033 YAGF---CDGAIGVFDAE 1047 (1071)
Q Consensus 1033 ~t~~---~Dg~i~vwd~~ 1047 (1071)
+.+. .+..+++-.+.
T Consensus 485 Vl~~~~~~~~~v~~v~v~ 502 (557)
T PRK13615 485 TLTLAPDGERQVELHQVG 502 (557)
T ss_pred EEeccCCCCceEEEEECC
Confidence 6552 23456666665
No 471
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=89.21 E-value=1.4 Score=29.84 Aligned_cols=30 Identities=13% Similarity=0.283 Sum_probs=23.4
Q ss_pred CCCCeEEEEeecCCCeEEEEEcCC--CeEEEE
Q 001477 345 QGSNVMSMDFHPQQQTILLVGTNV--GDISLW 374 (1071)
Q Consensus 345 h~~~V~~~~fsp~g~~lla~gs~d--g~i~iw 374 (1071)
....-.+..|||||++++.++..+ |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 456788999999999888888777 777666
No 472
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=89.19 E-value=0.4 Score=55.46 Aligned_cols=130 Identities=12% Similarity=0.156 Sum_probs=77.7
Q ss_pred CCCCeEEEEeecCC-CeEEEEEcCCCeEEEEecC--CCcccccccceeecccccccchhhhhcccCCCCeeEEEEC---C
Q 001477 345 QGSNVMSMDFHPQQ-QTILLVGTNVGDISLWEVG--SRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG---P 418 (1071)
Q Consensus 345 h~~~V~~~~fsp~g-~~lla~gs~dg~i~iwd~~--~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~s---p 418 (1071)
..++|-.++|-... .+++ ..-|...+|++. .|+......+++ ...-...+.-+.|. +
T Consensus 131 f~G~v~dl~fah~~~pk~~---~~vg~lfVy~vd~l~G~iq~~l~v~~--------------~~p~gs~~~~V~wcp~~~ 193 (1283)
T KOG1916|consen 131 FPGGVGDLQFAHTKCPKGR---RLVGELFVYDVDVLQGEIQPQLEVTP--------------ITPYGSDPQLVSWCPIAV 193 (1283)
T ss_pred CCCCcccccccccCChHHH---HHhhhhheeehHhhccccccceEEee--------------cCcCCCCcceeeeccccc
Confidence 35677777774321 1111 223678899875 344333211111 11222333444444 4
Q ss_pred CCCEEEEEeCCCeEEEEEecCCCccceeeEeecccCCEEEEE-----------EecCCCceEEEEEeCCCcEEEEEcc--
Q 001477 419 DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIA-----------FAHPNKQLCIVTCGDDKMIKVWDVV-- 485 (1071)
Q Consensus 419 d~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~-----------~s~d~~~~~l~s~~~d~~i~iwd~~-- 485 (1071)
+.-++..+-.++.|++.++++... ..+.+|...+..++ .||||+ .+++.+.||.++.|.+.
T Consensus 194 ~~~~ic~~~~~~~i~lL~~~ra~~----~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGt--v~a~a~~dG~v~f~Qiyi~ 267 (1283)
T KOG1916|consen 194 NKVYICYGLKGGEIRLLNINRALR----SLFRSHSQRVTDMAFFAEGVLKLASLSPDGT--VFAWAISDGSVGFYQIYIT 267 (1283)
T ss_pred ccceeeeccCCCceeEeeechHHH----HHHHhcCCCcccHHHHhhchhhheeeCCCCc--EEEEeecCCccceeeeeee
Confidence 677888888889999888776432 13456877777665 478898 88999999988887653
Q ss_pred ---CCceeEEecCCC
Q 001477 486 ---AGRKQYTFEGHE 497 (1071)
Q Consensus 486 ---~~~~~~~~~~h~ 497 (1071)
.-++++..+.|+
T Consensus 268 g~~~~rclhewkphd 282 (1283)
T KOG1916|consen 268 GKIVHRCLHEWKPHD 282 (1283)
T ss_pred ccccHhhhhccCCCC
Confidence 234556666666
No 473
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=89.13 E-value=38 Score=36.95 Aligned_cols=200 Identities=16% Similarity=0.230 Sum_probs=107.7
Q ss_pred cCCcEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCC---CCCE--EEEEe-CC---CeEEEEEcc--CCeEE
Q 001477 850 KNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQ---DNNI--IAIGM-ED---SSVQIYNVR--VDEVK 917 (1071)
Q Consensus 850 ~d~~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~---~~~~--la~g~-~d---g~v~vwd~~--~~~~~ 917 (1071)
|...+++... ++-+.+||++. +.+..+. .++.+.+..-.+ +++. ||+++ .+ .+|++|.+. ++.+
T Consensus 66 p~kSlIigTdK~~GL~VYdL~G-k~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L- 141 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLDG-KELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGEL- 141 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETTS--EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEE-
T ss_pred cccceEEEEeCCCCEEEEcCCC-cEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcc-
Confidence 4555666666 78899999974 4555553 344444433210 2222 44444 22 479999886 3443
Q ss_pred EEecC-------cCCCeeEEEE--cC-CCC-EEEEEeCCCcEEEEECCC-Cc-eeeeeeecCCCCCCCCCCCceEEEEcc
Q 001477 918 TKLKG-------HQNRITGLAF--SP-TLN-ALVSSGADAQLCMWSIDK-WE-KLKSRFIQAPAGRQSPLVGETKVQFHN 984 (1071)
Q Consensus 918 ~~l~~-------h~~~v~~l~~--s~-d~~-~l~s~~~d~~v~vWd~~~-~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~ 984 (1071)
..+.. -...+..+|+ ++ +|. +.+..+.+|.+..|.+.. ++ .+....++.+... ..+..|+...
T Consensus 142 ~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~----sQ~EGCVVDD 217 (381)
T PF02333_consen 142 TDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVG----SQPEGCVVDD 217 (381)
T ss_dssp EE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-S----S-EEEEEEET
T ss_pred eEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCC----CcceEEEEec
Confidence 33321 1234667776 33 455 556677899999888853 22 2333334433332 4678899999
Q ss_pred CCCEEEEEEC-CeEEEEeCC--CCceee-c--CCCCCCCCCeeEEEEec--CCc-EEE-EEeCCCeEEEEEcCC-CeEEE
Q 001477 985 DQTHLLVVHE-SQISVYDSK--LECSRS-W--SPKDALPAPISSAIYSC--DGL-LVY-AGFCDGAIGVFDAET-LRFRC 1053 (1071)
Q Consensus 985 dg~~l~~~~d-~~i~vwd~~--~~~~~~-~--~~~~~h~~~v~~~~~s~--dg~-~l~-t~~~Dg~i~vwd~~~-~~~~~ 1053 (1071)
...+|.++.+ ..|.-|+.+ ...... + .........|..|++-. +++ ||+ +.=.+++..||+.+. ...+.
T Consensus 218 e~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~~~~~g 297 (381)
T PF02333_consen 218 ETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGPNAYVG 297 (381)
T ss_dssp TTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT--EEE
T ss_pred ccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCCCcccc
Confidence 8889999865 466666662 222111 1 22233467888888854 443 555 444677899999875 56677
Q ss_pred EeCC
Q 001477 1054 RIGP 1057 (1071)
Q Consensus 1054 ~~~~ 1057 (1071)
.|..
T Consensus 298 ~f~i 301 (381)
T PF02333_consen 298 SFRI 301 (381)
T ss_dssp EEEE
T ss_pred eEEe
Confidence 6644
No 474
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=88.99 E-value=12 Score=40.96 Aligned_cols=146 Identities=10% Similarity=0.108 Sum_probs=88.7
Q ss_pred CCCceEEEEEeCCCcEEEEEccCCceeEEecCCCCCeEEEEecccCC------ccEEEEEecCCeEEEEEcCCCceeEEe
Q 001477 464 PNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKES------IQFIFSTAIDGKIKAWLYDYLGSRVDY 537 (1071)
Q Consensus 464 d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~------~~~l~s~~~d~~i~vwd~~~~~~~~~~ 537 (1071)
+...+++..|+....++-.|++.|+.+-.+.-|... -+.+.|... .+.| .|-.+..|.-.|.+..+.....
T Consensus 477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtl-vGlS~~svFrIDPR~~gNKi~v 553 (776)
T COG5167 477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTL-VGLSDYSVFRIDPRARGNKIKV 553 (776)
T ss_pred CCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceE-EeecccceEEecccccCCceee
Confidence 334445667777788999999999999988877665 345555421 1334 4445555555666654433322
Q ss_pred cCCCCcEEEEEEc----cCCCEEEEeccCCCCCCeEEEEeCCCCceeEEeecccccceeEEEEeCCCCEEEEEeCCCcEE
Q 001477 538 DAPGNWCTMMAYS----ADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIK 613 (1071)
Q Consensus 538 ~~~~~~i~~~~~s----~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 613 (1071)
.......+.-.|| ....++++++. .|-|++||--.-+....+++... .|..+..+.+|.++++.+.. .+.
T Consensus 554 ~esKdY~tKn~Fss~~tTesGyIa~as~----kGDirLyDRig~rAKtalP~lG~-aIk~idvta~Gk~ilaTCk~-yll 627 (776)
T COG5167 554 VESKDYKTKNKFSSGMTTESGYIAAASR----KGDIRLYDRIGKRAKTALPGLGD-AIKHIDVTANGKHILATCKN-YLL 627 (776)
T ss_pred eeehhccccccccccccccCceEEEecC----CCceeeehhhcchhhhcCccccc-ceeeeEeecCCcEEEEeecc-eEE
Confidence 2111122222222 24457888875 55599999654444444555555 78889999999999887653 566
Q ss_pred EEeCC
Q 001477 614 FWDMD 618 (1071)
Q Consensus 614 iwd~~ 618 (1071)
+-|+.
T Consensus 628 L~d~~ 632 (776)
T COG5167 628 LTDVP 632 (776)
T ss_pred EEecc
Confidence 65554
No 475
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=88.83 E-value=19 Score=35.39 Aligned_cols=156 Identities=14% Similarity=0.183 Sum_probs=86.5
Q ss_pred CeEEEEEecCCcEEEEEeCCeEEEEECC--CCeEEEEEeCCCCCeEEEEEcCCCCCEEEEEeCCC------eEEEEE-cc
Q 001477 842 SAACIALSKNDSYVMSASGGKVSLFNMM--TFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDS------SVQIYN-VR 912 (1071)
Q Consensus 842 ~v~~v~~s~d~~~la~~~dg~i~vwd~~--~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg------~v~vwd-~~ 912 (1071)
+...++-++.+.++++++.++|.+|++. ..+.+.+|..- +.|..++++. -|.+|++--.+. .+|+|= ++
T Consensus 19 EP~~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~-~GDYlvTlE~k~~~~~~~fvR~Y~NWr 96 (215)
T PF14761_consen 19 EPTAVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSE-AGDYLVTLEEKNKRSPVDFVRAYFNWR 96 (215)
T ss_pred CcceeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEecc-ccceEEEEEeecCCccceEEEEEEEhh
Confidence 3445555554455455668889999988 45666677643 7899999999 899999864332 566652 11
Q ss_pred ----CCeEEE-EecCc---------------------CCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCce-eeeeeec
Q 001477 913 ----VDEVKT-KLKGH---------------------QNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEK-LKSRFIQ 965 (1071)
Q Consensus 913 ----~~~~~~-~l~~h---------------------~~~v~~l~~s~d~~~l~s~~~d~~v~vWd~~~~~~-~~~~~~~ 965 (1071)
...++. .+-|| +.++.+++.-|-..-|+.|+ ++++.+|.+..... .......
T Consensus 97 ~~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~~~~~~~~l 175 (215)
T PF14761_consen 97 SQKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTIQSEKFSFL 175 (215)
T ss_pred hhcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEEecccccEE
Confidence 111111 22232 23566777777444444454 44699998766432 1100010
Q ss_pred CCCCCC---CCCCCceEEEEccCCCEEEEEECCeEEEEeC
Q 001477 966 APAGRQ---SPLVGETKVQFHNDQTHLLVVHESQISVYDS 1002 (1071)
Q Consensus 966 ~~~~~~---~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~ 1002 (1071)
...... ...-.+..++|. +.|+|..++..+++..+
T Consensus 176 DFe~~l~~~~~~~~p~~v~ic--~~yiA~~s~~ev~Vlkl 213 (215)
T PF14761_consen 176 DFERSLIDHIDNFKPTQVAIC--EGYIAVMSDLEVLVLKL 213 (215)
T ss_pred echhhhhheecCceEEEEEEE--eeEEEEecCCEEEEEEE
Confidence 110000 000112333333 66888888888887764
No 476
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=88.60 E-value=14 Score=33.10 Aligned_cols=112 Identities=16% Similarity=0.123 Sum_probs=0.0
Q ss_pred eEEEEEcCCCCCEEEEEeCCCeEEEEEcc--------CCeEEEEecCcCCCeeEEEEcC-----CCCEEEEEeCCCcEEE
Q 001477 884 ATFLAFHPQDNNIIAIGMEDSSVQIYNVR--------VDEVKTKLKGHQNRITGLAFSP-----TLNALVSSGADAQLCM 950 (1071)
Q Consensus 884 i~~l~~sp~~~~~la~g~~dg~v~vwd~~--------~~~~~~~l~~h~~~v~~l~~s~-----d~~~l~s~~~d~~v~v 950 (1071)
|..-.|.. ....|++++.-|+|.|++.. ....+..|. -...|++|+-.+ +...|+.|+... +..
T Consensus 1 VaiGkfDG-~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~t~-lla 77 (136)
T PF14781_consen 1 VAIGKFDG-VHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQTS-LLA 77 (136)
T ss_pred CeEEEeCC-CceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEeccce-EEE
Q ss_pred EECCCCceeeeeeecCCCCCCCCCCCceEEEE----ccCCCEEEEEECCeEEEEeCCCCce
Q 001477 951 WSIDKWEKLKSRFIQAPAGRQSPLVGETKVQF----HNDQTHLLVVHESQISVYDSKLECS 1007 (1071)
Q Consensus 951 Wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~----s~dg~~l~~~~d~~i~vwd~~~~~~ 1007 (1071)
||+.....+-..-+. +++.++.+ ..+..++++|.+..|.-||..+..+
T Consensus 78 YDV~~N~d~Fyke~~---------DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~ 129 (136)
T PF14781_consen 78 YDVENNSDLFYKEVP---------DGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEI 129 (136)
T ss_pred EEcccCchhhhhhCc---------cceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEE
No 477
>PRK13684 Ycf48-like protein; Provisional
Probab=88.40 E-value=42 Score=36.54 Aligned_cols=152 Identities=7% Similarity=-0.032 Sum_probs=81.4
Q ss_pred CCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCce--eEEecCCCCcEEEEEEccCCCEEEEeccCCCCCCeEEEEeC
Q 001477 497 EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS--RVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNE 574 (1071)
Q Consensus 497 ~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~--~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~ 574 (1071)
...+.++.+.+++ .+ +..+..|.+.. ..+.... ..........+.++.+.++++.++++. .+.+.+=..
T Consensus 172 ~g~~~~i~~~~~g--~~-v~~g~~G~i~~-s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~-----~G~~~~~s~ 242 (334)
T PRK13684 172 AGVVRNLRRSPDG--KY-VAVSSRGNFYS-TWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLAR-----GGQIRFNDP 242 (334)
T ss_pred cceEEEEEECCCC--eE-EEEeCCceEEE-EcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEec-----CCEEEEccC
Confidence 4567888887642 44 44555555442 1122221 222233455888999999998877763 344432223
Q ss_pred CCCceeEEeecc---cccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCC-CCCCcceEEEcCCCCEEEEE
Q 001477 575 SEGAIKRTYSGF---RKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG-GLPASPRLRFNKEGSLLAVT 650 (1071)
Q Consensus 575 ~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~ 650 (1071)
..|..-...... ....+..+.+.+++..+ .++.+|.+. ...+.++.-....... -......+.|..++..++ .
T Consensus 243 d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~-~~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 319 (334)
T PRK13684 243 DDLESWSKPIIPEITNGYGYLDLAYRTPGEIW-AGGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-L 319 (334)
T ss_pred CCCCccccccCCccccccceeeEEEcCCCCEE-EEcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-E
Confidence 333322211111 11246778888877654 455667655 4455555544443211 112466777776665554 5
Q ss_pred eCCCcEEEEE
Q 001477 651 TSDNGIKILA 660 (1071)
Q Consensus 651 ~~dg~v~iw~ 660 (1071)
+..|.|.-|+
T Consensus 320 G~~G~il~~~ 329 (334)
T PRK13684 320 GQRGVLLRYV 329 (334)
T ss_pred CCCceEEEec
Confidence 5677877665
No 478
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=88.21 E-value=2.8 Score=40.48 Aligned_cols=31 Identities=29% Similarity=0.442 Sum_probs=25.8
Q ss_pred CCeeEEEECCCC------CEEEEEeCCCeEEEEEecC
Q 001477 409 ISVNRCVWGPDG------LMLGVAFSKHIVHLYTYNP 439 (1071)
Q Consensus 409 ~~v~~~~~spd~------~~la~~~~dg~i~iwd~~~ 439 (1071)
..|..++|||-| -+||+...++.|.||....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 379999999954 3788889999999998664
No 479
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.77 E-value=12 Score=46.93 Aligned_cols=69 Identities=14% Similarity=0.169 Sum_probs=43.6
Q ss_pred CceEEEEccCCCEEEEEECCeEEEEeCCCCceeecCCCCCCCCCeeEEEEecCCcEEEEEeCCCeEEEEEcCCCeE
Q 001477 976 GETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRF 1051 (1071)
Q Consensus 976 ~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~t~~~Dg~i~vwd~~~~~~ 1051 (1071)
++.+..+......+.....+.+..|+-............ ....+.++..++++..||.+.+||+..+++
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 200 ESLQVLYYSPTKILIGFNRGLVVIKDRASKYVQSAYLPN-------GQLESRDGSHFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred ccceeeeecCCCcceeeeeeeeeehhcccccchhhcccc-------cccCccCCceEEEEEecCCEEeeecCCCce
Confidence 344455555555555556666666666333332211111 111188999999999999999999999876
No 480
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=87.72 E-value=1.1 Score=47.69 Aligned_cols=168 Identities=11% Similarity=0.100 Sum_probs=92.5
Q ss_pred EEEEeCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEccCCeEE-EEec-CcCC----Cee-EEEEcCCCCEEEEEeCCC
Q 001477 874 MTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVK-TKLK-GHQN----RIT-GLAFSPTLNALVSSGADA 946 (1071)
Q Consensus 874 ~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~-~~l~-~h~~----~v~-~l~~s~d~~~l~s~~~d~ 946 (1071)
+..+......+..+-..| ||+.+.+-+. ..+.|+++.+...- .++- ...+ .|+ .+..-..|.-|..++.||
T Consensus 213 i~~L~~~~~~v~qllL~P-dg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG 290 (733)
T COG4590 213 IRLLSVPFSDVSQLLLTP-DGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDG 290 (733)
T ss_pred hhhcCCCccchHhhEECC-CCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCC
Confidence 333555566788899999 8998887655 68899988765321 1111 1111 122 222223566788888999
Q ss_pred cEEEE-ECCCCceeeeeeecCCCCCCCCCCCceEEEEccCCCEEEE-EECCeEEEEeCCCCceeecCCCCCCCCCeeEEE
Q 001477 947 QLCMW-SIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDSKLECSRSWSPKDALPAPISSAI 1024 (1071)
Q Consensus 947 ~v~vW-d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~i~vwd~~~~~~~~~~~~~~h~~~v~~~~ 1024 (1071)
.|.-| |+..+.... +.+.+.......++..+.=-...+-++. ...|++.++..+....-..... -..+.-++
T Consensus 291 ~vsQWFdvr~~~~p~---l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~---~~~~~~~~ 364 (733)
T COG4590 291 LVSQWFDVRRDGQPH---LNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERA---YQAPQLVA 364 (733)
T ss_pred ceeeeeeeecCCCCc---ceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhh---hcCcceee
Confidence 98877 554433221 1111111111122222221122233333 4567777776633332222221 33567889
Q ss_pred EecCCcEEEEEeCCCeEEEEEcCCCe
Q 001477 1025 YSCDGLLVYAGFCDGAIGVFDAETLR 1050 (1071)
Q Consensus 1025 ~s~dg~~l~t~~~Dg~i~vwd~~~~~ 1050 (1071)
+||.+.+|++- ..|.|+++.+++..
T Consensus 365 ~Sp~~~~Ll~e-~~gki~~~~l~Nr~ 389 (733)
T COG4590 365 MSPNQAYLLSE-DQGKIRLAQLENRN 389 (733)
T ss_pred eCcccchheee-cCCceEEEEecCCC
Confidence 99999999854 46789999887654
No 481
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=87.63 E-value=2.2 Score=45.65 Aligned_cols=153 Identities=14% Similarity=0.085 Sum_probs=96.5
Q ss_pred CCCeEEEEEecCCcEEEEEeCCeEEEEECCCCeEEEE-E-eCCCC----CeE-EEEEcCCCCCEEEEEeCCCeEEEE-Ec
Q 001477 840 EESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTM-F-MSPPP----AAT-FLAFHPQDNNIIAIGMEDSSVQIY-NV 911 (1071)
Q Consensus 840 ~~~v~~v~~s~d~~~la~~~dg~i~vwd~~~~~~~~~-~-~~~~~----~i~-~l~~sp~~~~~la~g~~dg~v~vw-d~ 911 (1071)
...+..+-..|||+.+.+-+..++.++++.+.....+ + ....+ .|+ ++..-. +|.-+.++..||-|.-| |+
T Consensus 220 ~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~-Gg~SLLv~~~dG~vsQWFdv 298 (733)
T COG4590 220 FSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLS-GGFSLLVVHEDGLVSQWFDV 298 (733)
T ss_pred ccchHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHh-CceeEEEEcCCCceeeeeee
Confidence 5678888899999999988888999999876443221 1 11111 122 222333 67778889999988877 44
Q ss_pred cCC-e----EEEEecCcCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeecCCCCCCCCCCCceEEEEccCC
Q 001477 912 RVD-E----VKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQ 986 (1071)
Q Consensus 912 ~~~-~----~~~~l~~h~~~v~~l~~s~d~~~l~s~~~d~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg 986 (1071)
..+ . .+..++-...++..+.--.+.+-+++-+..|++.++.....+.+-.. ... ..+..+++||.+
T Consensus 299 r~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~--~~~-------~~~~~~~~Sp~~ 369 (733)
T COG4590 299 RRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFE--RAY-------QAPQLVAMSPNQ 369 (733)
T ss_pred ecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehh--hhh-------cCcceeeeCccc
Confidence 322 2 12222222234444443334556778888888888765543322110 111 345779999999
Q ss_pred CEEEEEECCeEEEEeC
Q 001477 987 THLLVVHESQISVYDS 1002 (1071)
Q Consensus 987 ~~l~~~~d~~i~vwd~ 1002 (1071)
.++++-+.|.++++.+
T Consensus 370 ~~Ll~e~~gki~~~~l 385 (733)
T COG4590 370 AYLLSEDQGKIRLAQL 385 (733)
T ss_pred chheeecCCceEEEEe
Confidence 9999988899999987
No 482
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=87.06 E-value=26 Score=40.78 Aligned_cols=58 Identities=16% Similarity=0.307 Sum_probs=36.5
Q ss_pred CCCeEEEEEecCCcEEEEEeCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCCEE
Q 001477 840 EESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNII 897 (1071)
Q Consensus 840 ~~~v~~v~~s~d~~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~l 897 (1071)
...+..++|+-....+|++..+.+.+|...+..-.....-.-..+.-+.|+|.....|
T Consensus 295 dEk~~~~~wn~~s~vlav~~~n~~~lwttkNyhWYLK~e~~ip~~s~vkwhpe~~nTl 352 (1243)
T COG5290 295 DEKAFLENWNLLSTVLAVAEGNLLKLWTTKNYHWYLKVERQIPGISYVKWHPEEKNTL 352 (1243)
T ss_pred hhhhhhhhhhHHHHHHHHhhcceEEEEEccceEEEEEEeecCCCcceeeeccccCcEE
Confidence 3445666777666677777778899999876544333333445566777777433333
No 483
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=86.52 E-value=19 Score=40.50 Aligned_cols=113 Identities=12% Similarity=0.062 Sum_probs=62.1
Q ss_pred cCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeecCCCCCCCCCCCceEEEEccCC------CEEEEE--E-
Q 001477 923 HQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQ------THLLVV--H- 993 (1071)
Q Consensus 923 h~~~v~~l~~s~d~~~l~s~~~d~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg------~~l~~~--~- 993 (1071)
.-...+.|+|.|||++|++--..|.|++++-.++.......+..... .........++|+|+- ++|.++ .
T Consensus 28 GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~-~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~ 106 (454)
T TIGR03606 28 GLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVN-DAQHNGLLGLALHPDFMQEKGNPYVYISYTYK 106 (454)
T ss_pred CCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceec-cCCCCceeeEEECCCccccCCCcEEEEEEecc
Confidence 34457899999999888876557999999866544211111111000 0012678999999884 344443 1
Q ss_pred --------CCeEEEEeCCCC--ce---eecC----CCCCCCCCeeEEEEecCCcEEEEEeCC
Q 001477 994 --------ESQISVYDSKLE--CS---RSWS----PKDALPAPISSAIYSCDGLLVYAGFCD 1038 (1071)
Q Consensus 994 --------d~~i~vwd~~~~--~~---~~~~----~~~~h~~~v~~~~~s~dg~~l~t~~~D 1038 (1071)
...|.-|.++.. .+ ..+. ....|. -..|+|.|||.+.++.+..
T Consensus 107 ~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~--GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 107 NGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHN--GGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred CCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcC--CceEEECCCCcEEEEECCC
Confidence 123444544211 11 1111 112233 3578899999877755543
No 484
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=86.51 E-value=59 Score=36.19 Aligned_cols=54 Identities=13% Similarity=0.029 Sum_probs=27.3
Q ss_pred ecCCcEEEEEe-C-----------CeEEEEECCCCeEEEEEe-CCCCCe-EEEEEcCCCCCEEEEEeCC
Q 001477 849 SKNDSYVMSAS-G-----------GKVSLFNMMTFKVMTMFM-SPPPAA-TFLAFHPQDNNIIAIGMED 903 (1071)
Q Consensus 849 s~d~~~la~~~-d-----------g~i~vwd~~~~~~~~~~~-~~~~~i-~~l~~sp~~~~~la~g~~d 903 (1071)
.-++++.+.|+ . ..+..||..+.+-...-. .....- .+++..- ++++.+.|+.+
T Consensus 82 ~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~-~~~IYv~GG~~ 149 (376)
T PRK14131 82 FIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLH-NGKAYITGGVN 149 (376)
T ss_pred EECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEee-CCEEEEECCCC
Confidence 34677777776 3 237788877644322111 111111 1222213 67888888864
No 485
>PRK13614 lipoprotein LpqB; Provisional
Probab=86.23 E-value=47 Score=38.71 Aligned_cols=159 Identities=13% Similarity=0.108 Sum_probs=88.5
Q ss_pred CeEEEEEcCCCCCEEEEEeCCCeEEEEEccCCeE-EEEecCcCCCeeEEEEcCCCCEEEEEeCCC--cEEEEECC-CCce
Q 001477 883 AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEV-KTKLKGHQNRITGLAFSPTLNALVSSGADA--QLCMWSID-KWEK 958 (1071)
Q Consensus 883 ~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~-~~~l~~h~~~v~~l~~s~d~~~l~s~~~d~--~v~vWd~~-~~~~ 958 (1071)
.+.+++.++ ++..+|....|+ -.+|-...+.. ...+.+. .++.-.|.++| ++-++..+. .|....-. +++.
T Consensus 344 ~~~s~avS~-~g~~~A~~~~~~-~~l~~~~~g~~~~~~~~g~--~Lt~PS~d~~g-~vWtv~~g~~~~vv~~~~~g~~~~ 418 (573)
T PRK13614 344 GPASPAESP-VSQTVAFLNGSR-TTLYTVSPGQPARALTSGS--TLTRPSFSPQD-WVWTAGPGGNGRIVAYRPTGVAEG 418 (573)
T ss_pred cccceeecC-CCceEEEecCCC-cEEEEecCCCcceeeecCC--CccCCcccCCC-CEEEeeCCCCceEEEEecCCCccc
Confidence 678899999 888888887776 23443332332 2334433 47788898888 555554433 44444322 1111
Q ss_pred eeee--eecCCCCCCCCCCCceEEEEccCCCEEEEE--ECCe--EEEEeC----CCCceeecCCC-CCCCCCeeEEEEec
Q 001477 959 LKSR--FIQAPAGRQSPLVGETKVQFHNDQTHLLVV--HESQ--ISVYDS----KLECSRSWSPK-DALPAPISSAIYSC 1027 (1071)
Q Consensus 959 ~~~~--~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~--~d~~--i~vwd~----~~~~~~~~~~~-~~h~~~v~~~~~s~ 1027 (1071)
.... .... ... ....|+.+..|+||..++.- .+|. |.|--+ .+......... -++...+.++.|..
T Consensus 419 ~~~~~~~v~~-~~l--~g~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~G~P~~L~~~~~~~~~~~~~sl~W~~ 495 (573)
T PRK13614 419 AQAPTVTLTA-DWL--AGRTVKELRVSREGVRALVISEQNGKSRVQVAGIVRNEDGTPRELTAPITLAADSDADTGAWVG 495 (573)
T ss_pred ccccceeecc-ccc--CCCeeEEEEECCCccEEEEEEEeCCccEEEEEEEEeCCCCCeEEccCceecccCCCcceeEEcC
Confidence 0000 0111 111 11349999999999988873 4665 776555 33211111110 12246889999999
Q ss_pred CCcEEEEEe---CCCeEEEEEcCCC
Q 001477 1028 DGLLVYAGF---CDGAIGVFDAETL 1049 (1071)
Q Consensus 1028 dg~~l~t~~---~Dg~i~vwd~~~~ 1049 (1071)
++.+++.+. .+-.+++..+..|
T Consensus 496 ~~sl~V~~~~~~~~~~~~~v~v~~g 520 (573)
T PRK13614 496 DSTVVVTKASATSNVVPELLSVDAG 520 (573)
T ss_pred CCEEEEEeccCCCcceEEEEEeCCC
Confidence 999877543 2234566666433
No 486
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=86.20 E-value=60 Score=36.03 Aligned_cols=198 Identities=13% Similarity=0.029 Sum_probs=104.4
Q ss_pred EEEEEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccCCceeEEecCCC-CCe
Q 001477 422 MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHE-APV 500 (1071)
Q Consensus 422 ~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~-~~v 500 (1071)
.+.++..+|.|.-.|..++..+-..... .....+..-.+..+|+ ++.++.++.++..|..+|+.+....... ..+
T Consensus 70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~-~~~~~~~~~~~~~~G~---i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~ 145 (370)
T COG1520 70 TVYVGTRDGNIFALNPDTGLVKWSYPLL-GAVAQLSGPILGSDGK---IYVGSWDGKLYALDASTGTLVWSRNVGGSPYY 145 (370)
T ss_pred eEEEecCCCcEEEEeCCCCcEEecccCc-CcceeccCceEEeCCe---EEEecccceEEEEECCCCcEEEEEecCCCeEE
Confidence 3444467777777777777643211111 0011222333333676 7788889999999988999888776555 111
Q ss_pred EEEEecccCCccEEEEEecCCeEEEEEcCCCceeEEecCCC---CcEEEEEEccCCCEEEEeccCCCCCCeEEEEeCCCC
Q 001477 501 YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPG---NWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG 577 (1071)
Q Consensus 501 ~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~---~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~ 577 (1071)
..-.+.. + ..+..++.++.+...|..++.......... ..+..-....++. ++.+..+ - ++.+.-.|..+|
T Consensus 146 ~~~~v~~--~-~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-vy~~~~~-~-~~~~~a~~~~~G 219 (370)
T COG1520 146 ASPPVVG--D-GTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGT-VYVGSDG-Y-DGILYALNAEDG 219 (370)
T ss_pred ecCcEEc--C-cEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecce-EEEecCC-C-cceEEEEEccCC
Confidence 1111111 1 344445567888888877777766544322 1111111122333 3333211 1 335777777778
Q ss_pred ceeEEeecccccc---eeEEEEeCC-----CCEEEEEeCCCcEEEEeCCCCceeEEEecC
Q 001477 578 AIKRTYSGFRKRS---LGVVQFDTT-----RNRFLAAGDEFQIKFWDMDNMNMLTTVDAD 629 (1071)
Q Consensus 578 ~~~~~~~~~~~~~---v~~~~~~~~-----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 629 (1071)
............. +........ +..++.++.++.+...|..+++.+......
T Consensus 220 ~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 220 TLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred cEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence 7766643221100 100001111 122355667788899999999988887653
No 487
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=86.13 E-value=0.2 Score=53.91 Aligned_cols=140 Identities=17% Similarity=0.272 Sum_probs=95.4
Q ss_pred eccCCCCCCccccCC------ccceeeEEeecCCCCeEEEEeecCCCeEEEEEcCCCeEEEEecCCCcccccccceeecc
Q 001477 319 SFAGVAHTPNVYSQD------DLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDI 392 (1071)
Q Consensus 319 ~~s~~~~~~~~~~~d------~~~~~~~~~~~h~~~V~~~~fsp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~ 392 (1071)
.|-+.++.+++...+ +..++....+.-++.-..++|.-+|+.+++.+-..+.+.+||+.+.....
T Consensus 41 ~w~~e~~nlavaca~tiv~~YD~agq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqq--------- 111 (615)
T KOG2247|consen 41 RWRPEGHNLAVACANTIVIYYDKAGQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQ--------- 111 (615)
T ss_pred eEecCCCceehhhhhhHHHhhhhhcceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHH---------
Confidence 344445555544332 33455555555666777889999998777777888999999997643211
Q ss_pred cccccchhhhhcccCCCCeeEEEECCCCCEEEEEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEE
Q 001477 393 SAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVT 472 (1071)
Q Consensus 393 ~~~~~~~~~~~~~~h~~~v~~~~~spd~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s 472 (1071)
+. .-..|... -+.|++.+..++.+...|.+.|++..+.+... ....|..+++++++.+.+. .+.
T Consensus 112 ------LE--~gg~~s~s--ll~wsKg~~el~ig~~~gn~viynhgtsR~ii---v~Gkh~RRgtq~av~lEd~---vil 175 (615)
T KOG2247|consen 112 ------LE--SGGTSSKS--LLAWSKGTPELVIGNNAGNIVIYNHGTSRRII---VMGKHQRRGTQIAVTLEDY---VIL 175 (615)
T ss_pred ------Hh--ccCcchHH--HHhhccCCccccccccccceEEEeccchhhhh---hhcccccceeEEEecccce---eee
Confidence 00 00112222 27899999999999999999999988765443 3434999999999999875 677
Q ss_pred EeCCCcEEEEE
Q 001477 473 CGDDKMIKVWD 483 (1071)
Q Consensus 473 ~~~d~~i~iwd 483 (1071)
++.|..+.+-.
T Consensus 176 ~dcd~~L~v~~ 186 (615)
T KOG2247|consen 176 CDCDNTLSVTT 186 (615)
T ss_pred cCcHHHHHHhh
Confidence 77777665443
No 488
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=85.43 E-value=17 Score=41.23 Aligned_cols=31 Identities=26% Similarity=0.310 Sum_probs=25.5
Q ss_pred CCeeEEEEecCCcEEEEEeCCCeEEEEEcCC
Q 001477 1018 APISSAIYSCDGLLVYAGFCDGAIGVFDAET 1048 (1071)
Q Consensus 1018 ~~v~~~~~s~dg~~l~t~~~Dg~i~vwd~~~ 1048 (1071)
..|.+++..+..+.|++.+.+|.|.+|++..
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 3499999999999999999999999999963
No 489
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=85.36 E-value=1e+02 Score=37.82 Aligned_cols=104 Identities=13% Similarity=0.171 Sum_probs=64.5
Q ss_pred EEEecCCcEEEEEeCCeEEEEECCCCeEEEEEeC--CCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcc--CCeEEEEec
Q 001477 846 IALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMS--PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVR--VDEVKTKLK 921 (1071)
Q Consensus 846 v~~s~d~~~la~~~dg~i~vwd~~~~~~~~~~~~--~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~--~~~~~~~l~ 921 (1071)
.|+.|-+.++.+|-...+++||+...++++.... -...|+.+++. +..+++|...-.|..+..+ +++++ .+.
T Consensus 939 ~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~---~~RI~VgD~qeSV~~~~y~~~~n~l~-~fa 1014 (1205)
T KOG1898|consen 939 GAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTY---GARIVVGDIQESVHFVRYRREDNQLI-VFA 1014 (1205)
T ss_pred eEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEeec---ceEEEEeeccceEEEEEEecCCCeEE-EEe
Confidence 3556777788887788999999988777665432 24568888884 4567777655556655444 44433 332
Q ss_pred Cc--CCCeeEEEEcCCCCEEEEEeCCCcEEEEECC
Q 001477 922 GH--QNRITGLAFSPTLNALVSSGADAQLCMWSID 954 (1071)
Q Consensus 922 ~h--~~~v~~l~~s~d~~~l~s~~~d~~v~vWd~~ 954 (1071)
.. ...|+++.+- |-..+|.+..=|.+.+-.+.
T Consensus 1015 dD~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 1015 DDPVPRHVTALELL-DYDTVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred CCCccceeeEEEEe-cCCceeeccccCcEEEEECC
Confidence 21 2236666654 45566666666666555544
No 490
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=84.40 E-value=5 Score=27.51 Aligned_cols=39 Identities=15% Similarity=0.099 Sum_probs=28.1
Q ss_pred cCCcEEEEEe--CCeEEEEECCCCeEEEEEeCCCCCeEEEEE
Q 001477 850 KNDSYVMSAS--GGKVSLFNMMTFKVMTMFMSPPPAATFLAF 889 (1071)
Q Consensus 850 ~d~~~la~~~--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~ 889 (1071)
||+++|.++. +++|.++|..+++.+..+... .....++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg-~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG-GYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC-CCCceEEe
Confidence 5788777776 789999999999888887652 33334444
No 491
>PRK13613 lipoprotein LpqB; Provisional
Probab=84.32 E-value=30 Score=40.74 Aligned_cols=153 Identities=13% Similarity=0.063 Sum_probs=87.3
Q ss_pred CeEEEEEcCCCCCEEEEEeCCC-eEEEEEccCCeE-----EEEecCcCCCeeEEEEcCCCCEEEEEeC--CC--cEEEEE
Q 001477 883 AATFLAFHPQDNNIIAIGMEDS-SVQIYNVRVDEV-----KTKLKGHQNRITGLAFSPTLNALVSSGA--DA--QLCMWS 952 (1071)
Q Consensus 883 ~i~~l~~sp~~~~~la~g~~dg-~v~vwd~~~~~~-----~~~l~~h~~~v~~l~~s~d~~~l~s~~~--d~--~v~vWd 952 (1071)
.+.+++.|+ ++..+|....++ .+++..+..+.. ...+. ...++.-.|.++|. +-++.. ++ .+++..
T Consensus 364 ~~~s~avS~-~g~~~A~v~~~~~~l~vg~~~~~~~~~~~~~~~~~--~~~Lt~PS~d~~g~-vWtvd~~~~~~~vl~v~~ 439 (599)
T PRK13613 364 PLRRVAVSR-DESRAAGISADGDSVYVGSLTPGASIGVHSWGVTA--DGRLTSPSWDGRGD-LWVVDRDPADPRLLWLLQ 439 (599)
T ss_pred CccceEEcC-CCceEEEEcCCCcEEEEeccCCCCccccccceeec--cCcccCCcCcCCCC-EEEecCCCCCceEEEEEc
Confidence 678999999 788887776655 566655533322 12233 23477888888874 445432 22 266665
Q ss_pred CCCCceeeeeeecCCCCCCCCCCCceEEEEccCCCEEEEE-E---CCeEEEEeC----CCC-ceeecCCCCCCCCCeeEE
Q 001477 953 IDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-H---ESQISVYDS----KLE-CSRSWSPKDALPAPISSA 1023 (1071)
Q Consensus 953 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~---d~~i~vwd~----~~~-~~~~~~~~~~h~~~v~~~ 1023 (1071)
- +++... +... .. ....|+.+..|+||..++.- . .+.|.|=-+ .+. .+........-...+.++
T Consensus 440 ~-~G~~~~---V~~~-~l--~g~~I~~lrvSrDG~RvAvv~~~~g~~~v~va~V~R~~~G~~~l~~~~~l~~~l~~v~~~ 512 (599)
T PRK13613 440 G-DGEPVE---VRTP-EL--DGHRVVAVRVARDGVRVALIVEKDGRRSLQIGRIVRDAKAVVSVEEFRSLAPELEDVTDM 512 (599)
T ss_pred C-CCcEEE---eecc-cc--CCCEeEEEEECCCccEEEEEEecCCCcEEEEEEEEeCCCCcEEeeccEEeccCCCcccee
Confidence 3 445432 1111 11 11369999999999998873 2 356766555 222 111111111113459999
Q ss_pred EEecCCcEEEEEe-CCCeEEEEEc
Q 001477 1024 IYSCDGLLVYAGF-CDGAIGVFDA 1046 (1071)
Q Consensus 1024 ~~s~dg~~l~t~~-~Dg~i~vwd~ 1046 (1071)
+|..++.+++.+. .++..-+|.+
T Consensus 513 ~W~~~~sL~Vlg~~~~~~~~v~~v 536 (599)
T PRK13613 513 SWAGDSQLVVLGREEGGVQQARYV 536 (599)
T ss_pred EEcCCCEEEEEeccCCCCcceEEE
Confidence 9999999877553 3334445543
No 492
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=83.87 E-value=77 Score=35.27 Aligned_cols=68 Identities=9% Similarity=-0.121 Sum_probs=30.8
Q ss_pred CCCEEEEEe-CCCeEEEEEecCC-CccceeeEeecccCCEEEEEEecCCCceEEEEEeCC-----------CcEEEEEcc
Q 001477 419 DGLMLGVAF-SKHIVHLYTYNPT-GELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD-----------KMIKVWDVV 485 (1071)
Q Consensus 419 d~~~la~~~-~dg~i~iwd~~~~-~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d-----------~~i~iwd~~ 485 (1071)
+++..+.|+ .+..+.++|+... ........+.. ..........-++. +.+.|+.. ..+..||..
T Consensus 38 ~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~-~~r~~~~~v~~~~~--IYV~GG~~~~~~~~~~~~~~~v~~YD~~ 114 (376)
T PRK14131 38 NNTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPG-GPREQAVAAFIDGK--LYVFGGIGKTNSEGSPQVFDDVYKYDPK 114 (376)
T ss_pred CCEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCC-CCcccceEEEECCE--EEEEcCCCCCCCCCceeEcccEEEEeCC
Confidence 455444444 3455677777532 12221112211 11111122233454 56666643 247778877
Q ss_pred CCce
Q 001477 486 AGRK 489 (1071)
Q Consensus 486 ~~~~ 489 (1071)
+.+.
T Consensus 115 ~n~W 118 (376)
T PRK14131 115 TNSW 118 (376)
T ss_pred CCEE
Confidence 6553
No 493
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=83.56 E-value=7 Score=39.29 Aligned_cols=72 Identities=15% Similarity=0.241 Sum_probs=49.6
Q ss_pred eecCCCeEEEEEcCCCeEEEEecCCCcccccccceeecccccccchhhhhcc-------cCCCCeeEEEECCCCCEEEEE
Q 001477 354 FHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLN-------DAAISVNRCVWGPDGLMLGVA 426 (1071)
Q Consensus 354 fsp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-------~h~~~v~~~~~spd~~~la~~ 426 (1071)
+..++.+ |.+-+.+|.+++||+.+++.+... ..+ ..++. .....|..+.++.+|.-|++-
T Consensus 18 l~~~~~~-Ll~iT~~G~l~vWnl~~~k~~~~~-~Si-----------~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~l 84 (219)
T PF07569_consen 18 LECNGSY-LLAITSSGLLYVWNLKKGKAVLPP-VSI-----------APLLNSSPVSDKSSSPNITSCSLTSNGVPIVTL 84 (219)
T ss_pred EEeCCCE-EEEEeCCCeEEEEECCCCeeccCC-ccH-----------HHHhcccccccCCCCCcEEEEEEcCCCCEEEEE
Confidence 4556764 556678999999999998876532 111 11122 456779999999888877766
Q ss_pred eCCCeEEEEEecC
Q 001477 427 FSKHIVHLYTYNP 439 (1071)
Q Consensus 427 ~~dg~i~iwd~~~ 439 (1071)
+ +|....|+.+-
T Consensus 85 s-ng~~y~y~~~L 96 (219)
T PF07569_consen 85 S-NGDSYSYSPDL 96 (219)
T ss_pred e-CCCEEEecccc
Confidence 4 57788888654
No 494
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=83.28 E-value=88 Score=35.50 Aligned_cols=105 Identities=10% Similarity=0.034 Sum_probs=56.8
Q ss_pred CCCeeEEEECCCCCEEEEEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEeCCCcEEEEEccCC
Q 001477 408 AISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG 487 (1071)
Q Consensus 408 ~~~v~~~~~spd~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~ 487 (1071)
..+|..+.+...|. +-.|+.|| +..||..+++.+... ......+|..+.-+-.|+ +..|+.+| |++.+.+..
T Consensus 164 d~~V~aLv~D~~g~-lWvgT~dG-L~~fd~~~gkalql~--s~~~dk~I~al~~d~qg~---LWVGTdqG-v~~~e~~G~ 235 (671)
T COG3292 164 DTPVVALVFDANGR-LWVGTPDG-LSYFDAGRGKALQLA--SPPLDKAINALIADVQGR---LWVGTDQG-VYLQEAEGW 235 (671)
T ss_pred CccceeeeeeccCc-EEEecCCc-ceEEccccceEEEcC--CCcchhhHHHHHHHhcCc---EEEEeccc-eEEEchhhc
Confidence 45688888887774 45666777 667777776654311 111225677777777776 56676554 666665442
Q ss_pred ceeEEec-CCCCCeEEEEecccCCccEEEEEecCCeE
Q 001477 488 RKQYTFE-GHEAPVYSVCPHHKESIQFIFSTAIDGKI 523 (1071)
Q Consensus 488 ~~~~~~~-~h~~~v~~i~~~~~~~~~~l~s~~~d~~i 523 (1071)
+...-.. -....|..+.-. .. ..+-.|+..|..
T Consensus 236 ~~sn~~~~lp~~~I~ll~qD--~q-G~lWiGTenGl~ 269 (671)
T COG3292 236 RASNWGPMLPSGNILLLVQD--AQ-GELWIGTENGLW 269 (671)
T ss_pred cccccCCCCcchheeeeecc--cC-CCEEEeecccce
Confidence 2111111 123344444322 22 356666666654
No 495
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=83.16 E-value=74 Score=34.51 Aligned_cols=108 Identities=9% Similarity=-0.022 Sum_probs=50.4
Q ss_pred EEEEEeCC-----CcEEEEEccCCce---eEEecCCCCCe--EEEEecccCCccEEEEEec-----CCeEEEEEcCCCce
Q 001477 469 CIVTCGDD-----KMIKVWDVVAGRK---QYTFEGHEAPV--YSVCPHHKESIQFIFSTAI-----DGKIKAWLYDYLGS 533 (1071)
Q Consensus 469 ~l~s~~~d-----~~i~iwd~~~~~~---~~~~~~h~~~v--~~i~~~~~~~~~~l~s~~~-----d~~i~vwd~~~~~~ 533 (1071)
+++.|+.+ ..+..+|+.+.+. ...+..-..+. .+++.. ++.+.+.|+. ...+..||+.+.+-
T Consensus 75 lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~---~~~iYv~GG~~~~~~~~~v~~yd~~~~~W 151 (323)
T TIGR03548 75 IYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK---DGTLYVGGGNRNGKPSNKSYLFNLETQEW 151 (323)
T ss_pred EEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE---CCEEEEEeCcCCCccCceEEEEcCCCCCe
Confidence 56667654 3566777766553 12221111111 122222 2356666664 23577788775543
Q ss_pred eEEecCCC-CcEEEEEEccCCCEEEEeccCCCCCCeEEEEeCCCCce
Q 001477 534 RVDYDAPG-NWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI 579 (1071)
Q Consensus 534 ~~~~~~~~-~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~ 579 (1071)
...-.... ......+..-+++..+.++.+......+.+||..+.+-
T Consensus 152 ~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W 198 (323)
T TIGR03548 152 FELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW 198 (323)
T ss_pred eECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence 32211111 11122223345666666664322122367888887653
No 496
>PLN02193 nitrile-specifier protein
Probab=82.67 E-value=99 Score=35.64 Aligned_cols=155 Identities=15% Similarity=0.071 Sum_probs=77.2
Q ss_pred CCCEEEEEeCC-----CeEEEEEccCCeE--EEEecC-cCCCeeEEEEcCCCCEEEEEeCCC-----cEEEEECCCCcee
Q 001477 893 DNNIIAIGMED-----SSVQIYNVRVDEV--KTKLKG-HQNRITGLAFSPTLNALVSSGADA-----QLCMWSIDKWEKL 959 (1071)
Q Consensus 893 ~~~~la~g~~d-----g~v~vwd~~~~~~--~~~l~~-h~~~v~~l~~s~d~~~l~s~~~d~-----~v~vWd~~~~~~~ 959 (1071)
++++.+.|+.+ ..+..||+.+.+- +..+.. ....-...+..-++++.+.+|.++ .+..||+.+.+..
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~ 307 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWF 307 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEE
Confidence 56777888765 3588899887642 222210 001111111223566777777543 3667887775543
Q ss_pred eeeeecCCCCCCCCCCCceEEEEccCCCEEEEE-EC----CeEEEEeCCCCceeecCCC-CCCCCCeeEEEEecCCcEEE
Q 001477 960 KSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HE----SQISVYDSKLECSRSWSPK-DALPAPISSAIYSCDGLLVY 1033 (1071)
Q Consensus 960 ~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d----~~i~vwd~~~~~~~~~~~~-~~h~~~v~~~~~s~dg~~l~ 1033 (1071)
.. ........ ..-...+..-+++.++.+ .+ ..+.+||.....-..+... .....+...-+..-++++++
T Consensus 308 ~~---~~~~~~~~--~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv 382 (470)
T PLN02193 308 HC---STPGDSFS--IRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVI 382 (470)
T ss_pred eC---CCCCCCCC--CCCCcEEEEECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEEE
Confidence 21 11100000 111112223467766664 23 4688999844443333221 00011112222334677888
Q ss_pred EEeCC--------------CeEEEEEcCCCeEE
Q 001477 1034 AGFCD--------------GAIGVFDAETLRFR 1052 (1071)
Q Consensus 1034 t~~~D--------------g~i~vwd~~~~~~~ 1052 (1071)
.|+.+ ..+.+||+.+.+..
T Consensus 383 ~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~ 415 (470)
T PLN02193 383 FGGEIAMDPLAHVGPGQLTDGTFALDTETLQWE 415 (470)
T ss_pred ECCccCCccccccCccceeccEEEEEcCcCEEE
Confidence 88853 24889999888765
No 497
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=82.61 E-value=52 Score=33.51 Aligned_cols=138 Identities=12% Similarity=0.101 Sum_probs=74.0
Q ss_pred EEEEcCCCceeEEecCCCCcEEEEEEccCCCEEEEeccCCCCCCeEEEEeCCC----CceeEEee-cccccceeEEEEeC
Q 001477 524 KAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE----GAIKRTYS-GFRKRSLGVVQFDT 598 (1071)
Q Consensus 524 ~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~----~~~~~~~~-~~~~~~v~~~~~~~ 598 (1071)
.+||+.+.+.............+-++-+||+.+.+++. .++...+++++..+ ........ -......-+...-+
T Consensus 49 ~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~-~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~ 127 (243)
T PF07250_consen 49 VEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGD-NDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP 127 (243)
T ss_pred EEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCC-CccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence 34666665443322222233344457789999888874 44566788888654 11111000 01111344566678
Q ss_pred CCCEEEEEeCCC-cEEEEeCCC-CceeEE---Eec---CCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCh
Q 001477 599 TRNRFLAAGDEF-QIKFWDMDN-MNMLTT---VDA---DGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1071)
Q Consensus 599 ~~~~l~~~~~dg-~i~iwd~~~-~~~~~~---~~~---~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~ 664 (1071)
||+.|+.||... +..+|.... ...... +.. ......-..+...|+|++++.+..+. .|||..+.
T Consensus 128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n 199 (243)
T PF07250_consen 128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTN 199 (243)
T ss_pred CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCC
Confidence 999999988654 455565432 111111 111 11111224566789999998887654 45677665
No 498
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=82.37 E-value=1.3e+02 Score=36.88 Aligned_cols=173 Identities=13% Similarity=0.134 Sum_probs=94.4
Q ss_pred eEEEEECCCCeEEEEEeCCCC----CeEEEEEcCCCCC-EEEEEe-----------CCCeEEEEEcc-CCeEEEEec--C
Q 001477 862 KVSLFNMMTFKVMTMFMSPPP----AATFLAFHPQDNN-IIAIGM-----------EDSSVQIYNVR-VDEVKTKLK--G 922 (1071)
Q Consensus 862 ~i~vwd~~~~~~~~~~~~~~~----~i~~l~~sp~~~~-~la~g~-----------~dg~v~vwd~~-~~~~~~~l~--~ 922 (1071)
.|+++|..+++.+..+.-..+ .+.++.|+..+.. ++++|. .+|.++.|++- .|+.+.-+. .
T Consensus 854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~ 933 (1205)
T KOG1898|consen 854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTE 933 (1205)
T ss_pred eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccC
Confidence 478888888777666543222 4667777763333 444443 24557777754 334222221 1
Q ss_pred cCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeecCCCCCCCCCCCceEEEEccCCCEEEEEEC-CeEE--E
Q 001477 923 HQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHE-SQIS--V 999 (1071)
Q Consensus 923 h~~~v~~l~~s~d~~~l~s~~~d~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d-~~i~--v 999 (1071)
-.+.|. |+.|-..++.+| ....+++||+...+.+........ +..|+.+++ .+..+++|+. ..|. .
T Consensus 934 ~~~~v~--Ai~~f~~~~Lag-vG~~l~~YdlG~K~lLRk~e~k~~------p~~Is~iqt--~~~RI~VgD~qeSV~~~~ 1002 (1205)
T KOG1898|consen 934 IPGPVG--AICPFQGRVLAG-VGRFLRLYDLGKKKLLRKCELKFI------PNRISSIQT--YGARIVVGDIQESVHFVR 1002 (1205)
T ss_pred CCccce--EEeccCCEEEEe-cccEEEEeeCChHHHHhhhhhccC------ceEEEEEee--cceEEEEeeccceEEEEE
Confidence 223343 445655555543 455799999998665543222221 133455544 3556777642 2333 4
Q ss_pred EeCCCCceeecCCCCCCCCCeeEEEEecCCcEEEEEeCCCeEEEEEcC
Q 001477 1000 YDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAE 1047 (1071)
Q Consensus 1000 wd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~t~~~Dg~i~vwd~~ 1047 (1071)
|+-..+.+..+... .-...|+++.+- |...++.+..=|.+.+-.+.
T Consensus 1003 y~~~~n~l~~fadD-~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 1003 YRREDNQLIVFADD-PVPRHVTALELL-DYDTVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred EecCCCeEEEEeCC-CccceeeEEEEe-cCCceeeccccCcEEEEECC
Confidence 55455555555432 235667777765 44456767777777776664
No 499
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=81.10 E-value=50 Score=36.73 Aligned_cols=72 Identities=11% Similarity=0.106 Sum_probs=39.3
Q ss_pred CeEEEEEcCCCCCEEEEEeCCCeEEEEEc---------cCCeEEEE---------ec--CcCCCeeEEEEcCCC---CEE
Q 001477 883 AATFLAFHPQDNNIIAIGMEDSSVQIYNV---------RVDEVKTK---------LK--GHQNRITGLAFSPTL---NAL 939 (1071)
Q Consensus 883 ~i~~l~~sp~~~~~la~g~~dg~v~vwd~---------~~~~~~~~---------l~--~h~~~v~~l~~s~d~---~~l 939 (1071)
.|..+..++ .|..+|-.+.+|.+.++=. ++|+..-. +. ...-.+..++|+|+. ..|
T Consensus 105 eV~~vl~s~-~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL 183 (741)
T KOG4460|consen 105 EVYQVLLSP-TGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHL 183 (741)
T ss_pred EEEEEEecC-CCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceE
Confidence 356677888 7888888888886554431 12221100 00 011124455666654 455
Q ss_pred EEEeCCCcEEEEECCC
Q 001477 940 VSSGADAQLCMWSIDK 955 (1071)
Q Consensus 940 ~s~~~d~~v~vWd~~~ 955 (1071)
..-+.|.++|+||+..
T Consensus 184 ~iL~sdnviRiy~lS~ 199 (741)
T KOG4460|consen 184 VLLTSDNVIRIYSLSE 199 (741)
T ss_pred EEEecCcEEEEEecCC
Confidence 5556666777776665
No 500
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=81.09 E-value=71 Score=32.92 Aligned_cols=186 Identities=11% Similarity=0.075 Sum_probs=104.8
Q ss_pred eccCCCCCCccccCCccc----eeeEEeecCCCCeEEEEeecCCCeEEEEEcCCCeEEEEecCCCcccccccceeecccc
Q 001477 319 SFAGVAHTPNVYSQDDLT----KTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISA 394 (1071)
Q Consensus 319 ~~s~~~~~~~~~~~d~~~----~~~~~~~~h~~~V~~~~fsp~g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~ 394 (1071)
++-+.|..+++...-+.+ ...+..+.-.+-+..+.|+.+ ++..+..+.-++|.|+.+........+
T Consensus 55 a~v~qG~~l~i~ditn~~~~t~~~l~~~i~~~~l~~Dv~vse~---yvyvad~ssGL~IvDIS~P~sP~~~~~------- 124 (370)
T COG5276 55 AYVGQGFILAILDITNVSLQTHDVLLSVINARDLFADVRVSEE---YVYVADWSSGLRIVDISTPDSPTLIGF------- 124 (370)
T ss_pred cccccCceEeeccccCcccccCcceEEEEehhhhhheeEeccc---EEEEEcCCCceEEEeccCCCCcceecc-------
Confidence 344556555554333222 223444445667888888865 345566677889999887654332110
Q ss_pred cccchhhhhcccCCCCeeEEEECCCCCEEEEEeCCCeEEEEEecCCCccceeeEeecccCCEEEEEEecCCCceEEEEEe
Q 001477 395 ASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG 474 (1071)
Q Consensus 395 ~~~~~~~~~~~~h~~~v~~~~~spd~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~ 474 (1071)
+. -.+--.++.. .|++..++..|.-..+.|+.+.........+......-..++.| |+ +-..+.
T Consensus 125 ---------ln-t~gyaygv~v--sGn~aYVadlddgfLivdvsdpssP~lagrya~~~~d~~~v~IS--Gn--~AYvA~ 188 (370)
T COG5276 125 ---------LN-TDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDTHDVAIS--GN--YAYVAW 188 (370)
T ss_pred ---------cc-CCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCceeEEEe--cC--eEEEEE
Confidence 11 1123344444 58888888756667788988765543333343444455677777 44 445566
Q ss_pred CCCcEEEEEccCCcee---EEecCCCCCeEEEEecccCCccEEEEEecCCeEEEEEcCCCceeE
Q 001477 475 DDKMIKVWDVVAGRKQ---YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV 535 (1071)
Q Consensus 475 ~d~~i~iwd~~~~~~~---~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~ 535 (1071)
.|+-+.+-|+.....- ... .....+.++..+++ +....-.+--+.+-|....+...
T Consensus 189 ~d~GL~ivDVSnp~sPvli~~~-n~g~g~~sv~vsdn----r~y~vvy~egvlivd~s~~ssp~ 247 (370)
T COG5276 189 RDGGLTIVDVSNPHSPVLIGSY-NTGPGTYSVSVSDN----RAYLVVYDEGVLIVDVSGPSSPT 247 (370)
T ss_pred eCCCeEEEEccCCCCCeEEEEE-ecCCceEEEEecCC----eeEEEEcccceEEEecCCCCCce
Confidence 7888999998765422 221 12336777766653 33333334455666666655444
Done!