Query 001477
Match_columns 1071
No_of_seqs 861 out of 5068
Neff 10.7
Searched_HMMs 29240
Date Tue Mar 26 16:14:36 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001477.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_779-782//hhsearch_pdb/001477hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 583.5 58.0 621 340-1047 608-1248(1249)
2 2ymu_A WD-40 repeat protein; u 1.0 1 1 567.7 71.3 564 341-1045 10-577 (577)
3 1nr0_A Actin interacting prote 1.0 1 1 553.2 71.0 542 337-1047 49-610 (611)
4 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 530.2 57.0 556 403-1058 610-1217(1249)
5 1nr0_A Actin interacting prote 1.0 1 1 523.4 65.8 535 345-1050 17-569 (611)
6 2ymu_A WD-40 repeat protein; u 1.0 1 1 519.6 68.1 552 312-1001 16-577 (577)
7 1pgu_A Actin interacting prote 1.0 1 1 513.2 66.9 557 345-1049 17-615 (615)
8 2oaj_A Protein SNI1; WD40 repe 1.0 1 1 506.0 63.1 606 340-1061 11-796 (902)
9 1pgu_A Actin interacting prote 1.0 1 1 477.8 56.4 527 338-1003 54-613 (615)
10 2oaj_A Protein SNI1; WD40 repe 1.0 1 1 458.0 58.5 624 311-1036 16-817 (902)
No 1
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=583.50 Aligned_cols=621 Identities=14% Similarity=0.182 Sum_probs=490.6
Q ss_pred EEEEC-CCCCEEEEEEECCCCEEEEEECCCCEEEEEECCCCCCCCCCCCEEECCCCCCCCHHHHHCCCCCCCEEEEEECC
Q ss_conf 77504-89975799961599929999838770999952887634566513211444651002110366788816999889
Q 001477 340 VRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP 418 (1071)
Q Consensus 340 ~~~~~-h~~~V~~~~fsp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~sp 418 (1071)
...+. |.+.|++++|+|+|+ ++++|+.||.|++||+.+++.+.. +.+|.+.|.+++|+|
T Consensus 608 ~~~~~~h~~~v~~~~~s~~~~-~l~s~~~d~~i~vw~~~~~~~~~~-------------------~~~h~~~v~~~~~s~ 667 (1249)
T 3sfz_A 608 RLVVRPHTDAVYHACFSQDGQ-RIASCGADKTLQVFKAETGEKLLD-------------------IKAHEDEVLCCAFSS 667 (1249)
T ss_dssp SEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEE-------------------ECCCSSCEEEEEECT
T ss_pred EEEEECCCCCEEEEEECCCCC-EEEEEECCCEEEEEECCCCCEEEE-------------------ECCCCCCEEEEEEEC
T ss_conf 278716666489999879999-899994889499999899978887-------------------606777789999926
Q ss_pred CCCEEEEEECCCEEEEEEECCCCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCCEEEEECCCCCEEEEECCCCC
Q ss_conf 99989999599949999905998311026863356887789992699935999993998399998568813478207999
Q 001477 419 DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEA 498 (1071)
Q Consensus 419 dg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~ 498 (1071)
+++++++++.|+.|++||+.+++.+. .+.+|...|.+++|+|++...++++++.|+.|++||+.+++++..+.+|..
T Consensus 668 ~~~~l~s~~~d~~v~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~ 744 (1249)
T 3sfz_A 668 DDSYIATCSADKKVKIWDSATGKLVH---TYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTN 744 (1249)
T ss_dssp TSSEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSS
T ss_pred CCCEEEEEECCCEEEEEECCCCCEEE---EECCCCCCEEEEEEECCCCCEEEEEEECCCEEEEEECCCCCHHHEECCCCC
T ss_conf 99989998189959998779993689---995899737999984089965999980897099998999634220127779
Q ss_pred CEEEEEECCCCCCCEEEEEECCCEEEEEECCCCCEEEEECC-------------CCCCEEEEEECCCCCEEEEECCCCCC
Q ss_conf 85799742568942999992699399997677842577349-------------99818999992599979995148889
Q 001477 499 PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA-------------PGNWCTMMAYSADGTRLFSCGTSKEG 565 (1071)
Q Consensus 499 ~v~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-------------~~~~i~~~~~s~~~~~l~~~~~~~d~ 565 (1071)
.|.+++|+|++ .++++++.||.|++||+........+.. ....+.+++|+|++..+++++
T Consensus 745 ~v~~~~~sp~~--~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~----- 817 (1249)
T 3sfz_A 745 SVNHCRFSPDD--ELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA----- 817 (1249)
T ss_dssp CEEEEEECSST--TEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-----
T ss_pred CEEEEEEECCC--CEEEEEECCCEEEEEECCCCCCCCEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEC-----
T ss_conf 78899992599--98999978985999968888655302023210246776445650179999978998899975-----
Q ss_pred CCEEEEEECCCCCEEEEEECCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCCEEEECCCCC
Q ss_conf 97099996899805677616566405599993899999998289939999589991249971599999823389738999
Q 001477 566 ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGS 645 (1071)
Q Consensus 566 ~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 645 (1071)
++.+.+|+..++.....+...+...+.+++|+|++..+++++.|+.|++|++.++..+..+..|. ..|.+++|+|++.
T Consensus 818 ~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~--~~v~~v~~spdg~ 895 (1249)
T 3sfz_A 818 KNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHL--SWVHGVMFSPDGS 895 (1249)
T ss_dssp TTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCS--SCEEEEEECTTSS
T ss_pred CCCEEEEEECCCCCEEEECCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEECCCCC--CCEEEEEECCCCC
T ss_conf 89599999568972357747877760799982788889999479869999867895653227876--6568999989999
Q ss_pred EEEEEECCCCEEEEECCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999589919999968714666541388322346999997788751233589876543358988889999996212556
Q 001477 646 LLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSL 725 (1071)
Q Consensus 646 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 725 (1071)
.+++++.||.+++|+..+.................... ...+..... ...+..+.... .........
T Consensus 896 ~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~---~~~~~~~~~~~----~~~~~~~~~ 962 (1249)
T 3sfz_A 896 SFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQEN------ETMVLAVDN---IRGLQLIAGKT----GQIDYLPEA 962 (1249)
T ss_dssp EEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETT------EEEEEEEES---SSSEEEEEESS----CCEEEECCS
T ss_pred EEEEEECCCEEEEEECCCCCEEEEECCCCEEEEEECCC------CCEEEEECC---CCCEEEEECCC----CEEEECCCC
T ss_conf 89999589728988746652010211331036897599------868998137---76248984476----508972567
Q ss_pred CCCCCCCCCCCCCCCCCC-CCCCCEECCCCCCCCCCCEEEECCCCCCCCCEEEEEEECCCCHHHHCCCCCEEEEEECCCC
Q ss_conf 878865334666654445-5762001047888945520665589767786399997046202111133460688751466
Q 001477 726 GTIDGSRLVDVKPRVAED-VDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRT 804 (1071)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~-~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~~~~~dg~i~iw~~~~~ 804 (1071)
......+++++..++++. ++.+.+|++.+..... .+. .|...|.+++|+|+|+.+++++.||.+++|++..+
T Consensus 963 ~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~-----~~~--~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~ 1035 (1249)
T 3sfz_A 963 QVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFS-----SGV--GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTG 1035 (1249)
T ss_dssp CEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEE-----ECC--CCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTT
T ss_pred CEEEEEECCCCCEEEEECCCCCEEEEECCCCCEEE-----ECC--CCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCC
T ss_conf 27899995899779998699988999757872344-----303--67771689999899998999869987999987999
Q ss_pred CCCCCCCCCEEECCEECCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEECCEEEEEECCCCEEEEEEECCCCCE
Q ss_conf 67999950001154220489987212346788898787279997039959999819919999889971999990899985
Q 001477 805 ERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAA 884 (1071)
Q Consensus 805 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~i~~s~d~~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i 884 (1071)
.... ... | ...+.++++++++.+++.+.||.|++||+.+++....+.+|.+.|
T Consensus 1036 ----------------------~~~~--~~~--~-~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v 1088 (1249)
T 3sfz_A 1036 ----------------------DYVF--LQA--H-QETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTV 1088 (1249)
T ss_dssp ----------------------EEEC--CBC--C-SSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSSCC
T ss_pred ----------------------CEEE--EEC--C-CCCEEEEEECCCCCEEEEECCCCEEEEECCCCCEEEEECCCCCCE
T ss_conf ----------------------6689--852--7-873899999089958999788968998889886558874668848
Q ss_pred EEEEECCCCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEE
Q ss_conf 99998289997899983897199999568758898428678856999927999899992999399997787722311231
Q 001477 885 TFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFI 964 (1071)
Q Consensus 885 ~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~v~~l~~s~d~~~l~s~~~d~~i~iWd~~~~~~~~~~~~ 964 (1071)
++++|+| +++++++++.||.|++|++.+++++..+.+|.+.|++++|+||+++|++++.||.|++|++.+++.......
T Consensus 1089 ~~~~~s~-d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~ 1167 (1249)
T 3sfz_A 1089 LSCAISS-DATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAP 1167 (1249)
T ss_dssp CCEEECS-SSSSCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCC
T ss_pred EEEEECC-CCCEEEEECCCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECC
T ss_conf 9999989-999899984999489987898500125506877679999979999899982899799998899945788514
Q ss_pred ----CCCCCCCCCCCCCEEEEECCCCCEEEEEECCEEEEEEC-CCCCEEECCCCCCCCCCEEEEEEECCCCEEEEEECCC
Q ss_conf ----07889999987830799956998999997991999957-9970010289999999926999911996999980799
Q 001477 965 ----QAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDG 1039 (1071)
Q Consensus 965 ----~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~iwd~-~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~t~~~Dg 1039 (1071)
....++. ..+++++|+|||+++++++ +.|++||+ ++..+..+ ..|...|++++|+||+++|++++.||
T Consensus 1168 ~~~~~~~~~~~---~~v~~l~fs~dg~~l~s~~-g~v~vwd~~~g~~~~~~---~~~~~~i~~~~~s~dg~~l~~~~~dg 1240 (1249)
T 3sfz_A 1168 ISVEEGTATHG---GWVTDVCFSPDSKTLVSAG-GYLKWWNVATGDSSQTF---YTNGTNLKKIHVSPDFRTYVTVDNLG 1240 (1249)
T ss_dssp CC-------CC---SCCCEEEECTTSSCEEEES-SSEEEBCSSSCBCCCCC---CCSSCCCCCCEECSSSCCEEEECTTC
T ss_pred CCCCCCCCCCC---CEEEEEEECCCCCEEEECC-CEEEEEECCCCCEEEEE---ECCCCCCCEEEECCCCCEEEEECCCC
T ss_conf 44442102567---4289999978999899779-85999898889500464---00477532799978987799966881
Q ss_pred EEEEEECC
Q ss_conf 09999869
Q 001477 1040 AIGVFDAE 1047 (1071)
Q Consensus 1040 ~i~iwd~~ 1047 (1071)
.|++|++.
T Consensus 1241 ~v~vw~l~ 1248 (1249)
T 3sfz_A 1241 ILYILQVL 1248 (1249)
T ss_dssp CEEEECCC
T ss_pred EEEEEEEC
T ss_conf 79997643
No 2
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=1.00 E-value=1 Score=567.71 Aligned_cols=564 Identities=21% Similarity=0.373 Sum_probs=470.9
Q ss_pred EEEC-CCCCEEEEEEECCCCEEEEEECCCCEEEEEECCCCCCCCCCCCEEECCCCCCCCHHHHHCCCCCCCEEEEEECCC
Q ss_conf 7504-899757999615999299998387709999528876345665132114446510021103667888169998899
Q 001477 341 RTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD 419 (1071)
Q Consensus 341 ~~~~-h~~~V~~~~fsp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~spd 419 (1071)
..|. |.+.|+|++|||||+ +||+|+.|+.|+|||. +++.+.. +.+|.+.|++++|+||
T Consensus 10 ~~L~GH~~~V~~~a~spdg~-~las~~~d~~v~iWd~-~~~~~~~-------------------l~gh~~~V~~l~fspd 68 (577)
T 2ymu_A 10 NRLEAHSSSVRGVAFSPDGQ-TIASASDDKTVKLWNR-NGQLLQT-------------------LTGHSSSVWGVAFSPD 68 (577)
T ss_dssp EEECCCSSCEEEEEECTTSS-CEEEEETTSEEEEECT-TSCEEEE-------------------EECCSSCEEEEEECTT
T ss_pred EEECCCCCCEEEEEECCCCC-EEEEEECCCEEEEEEC-CCCEEEE-------------------EECCCCCEEEEEECCC
T ss_conf 39878998579999989989-9999938998999979-9978999-------------------9689899899999899
Q ss_pred CCEEEEEECCCEEEEEEECCCCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCCEEEEECCCCCEEEEECCCCCC
Q ss_conf 99899995999499999059983110268633568877899926999359999939983999985688134782079998
Q 001477 420 GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAP 499 (1071)
Q Consensus 420 g~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~ 499 (1071)
+++||+++.|+.|++||.. ++.+. .+.+|...|.+++|+|+++ ++++++.|+.+++|+.. ........++...
T Consensus 69 g~~las~~~d~~i~vWd~~-~~~~~---~~~~~~~~v~~~~~s~d~~--~l~~~~~d~~~~~~~~~-~~~~~~~~~~~~~ 141 (577)
T 2ymu_A 69 GQTIASASDDKTVKLWNRN-GQLLQ---TLTGHSSSVRGVAFSPDGQ--TIASASDDKTVKLWNRN-GQLLQTLTGHSSS 141 (577)
T ss_dssp SSEEEEEETTSCEEEEETT-SCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEETT-CCEEEEECCCSSC
T ss_pred CCEEEEEECCCEEEEEECC-CCEEE---EEECCCCCEEEEEECCCCC--EEEEECCCCCEEECCCC-CCEEEECCCCCCC
T ss_conf 9999999698979999899-97899---9978999889999989999--89998079833520235-5200110477774
Q ss_pred EEEEEECCCCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEECCCCCCCCEEEEEECCCCCE
Q ss_conf 57997425689429999926993999976778425773499981899999259997999514888997099996899805
Q 001477 500 VYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI 579 (1071)
Q Consensus 500 v~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~ 579 (1071)
+.++.+.++. ..+++++.++.+++|+.. .........+...+.++.++|++.++++++. ++.+++|+. +++.
T Consensus 142 v~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~v~~w~~-~~~~ 213 (577)
T 2ymu_A 142 VWGVAFSPDG--QTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDGQTIASASD----DKTVKLWNR-NGQL 213 (577)
T ss_dssp EEEEEECTTS--SCEEEEETTSEEEEECTT-SCEEEEEECCSSCEEEEEECTTSSCEEEEET----TSEEEEECT-TSCE
T ss_pred EEEEEEECCC--CCCEECCCCCCEECCCCC-EEEEEECCCCCCCEEEEEECCCCCEEEEECC----CCEEEEEEC-CCCE
T ss_conf 3555420377--632002555310000000-0000002687763566541699778999859----998999949-9968
Q ss_pred EEEEECCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCCEEEECCCCCEEEEEECCCCEEEE
Q ss_conf 67761656640559999389999999828993999958999124997159999982338973899999999589919999
Q 001477 580 KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKIL 659 (1071)
Q Consensus 580 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 659 (1071)
+..+.+|.. .+.+++|+|++.++++++.|+.|++|+.. ++.+..+..+. ..+.+++|+|++..+++++.|+.+++|
T Consensus 214 ~~~~~~~~~-~v~~~~~s~dg~~l~~~~~d~~i~~w~~~-~~~~~~~~~~~--~~v~~v~~~~d~~~l~~~~~d~~i~~w 289 (577)
T 2ymu_A 214 LQTLTGHSS-SVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHS--SSVNGVAFRPDGQTIASASDDKTVKLW 289 (577)
T ss_dssp EEEEECCSS-CEEEEEECTTSSCEEEEETTSCEEEECTT-SCEEEEECCCS--SCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred EEEEECCCC-CEEEEEECCCCCEEEEEECCCEEEEEECC-CCEEEEEECCC--CCEEEEEECCCCCEEEEEECCCEEEEE
T ss_conf 999946889-88999997999999999189989999599-97999980688--987999996899999999599979999
Q ss_pred ECCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 96871466654138832234699999778875123358987654335898888999999621255687886533466665
Q 001477 660 ANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPR 739 (1071)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 739 (1071)
+... +..+.+.+|...+.. ..+.+++..+
T Consensus 290 ~~~~--~~~~~~~~h~~~v~~-------------------------------------------------~~~~~~~~~l 318 (577)
T 2ymu_A 290 NRNG--QLLQTLTGHSSSVWG-------------------------------------------------VAFSPDGQTI 318 (577)
T ss_dssp ETTS--CEEEEECCCSSCEEE-------------------------------------------------EEECTTSSEE
T ss_pred ECCC--CEEEEEECCCCCEEE-------------------------------------------------EEECCCCCEE
T ss_conf 4899--589997068897699-------------------------------------------------9999999999
Q ss_pred CCC-CCCCCCEECCCCCCCCCCCEEEECCCCCCCCCEEEEEEECCCCHHHHCCCCCEEEEEECCCCCCCCCCCCCEEECC
Q ss_conf 444-5576200104788894552066558976778639999704620211113346068875146667999950001154
Q 001477 740 VAE-DVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAP 818 (1071)
Q Consensus 740 ~~~-~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~g~~~~~~~~ 818 (1071)
+++ .++.+++|+.... ... .+.. |...+.+++|+|+++.+++++.++.+++|+...
T Consensus 319 ~t~~~d~~i~~w~~~~~----~~~--~~~~--~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~--------------- 375 (577)
T 2ymu_A 319 ASASDDKTVKLWNRNGQ----HLQ--TLTG--HSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG--------------- 375 (577)
T ss_dssp EEEETTSCEEEEETTSC----EEE--EECC--CSSCEEEEEECTTSSEEEEEETTSEEEEEETTC---------------
T ss_pred EEEECCCEEEEEECCCC----EEE--EEEC--CCCCEEEEEECCCCCEEEEEECCCEEEEECCCC---------------
T ss_conf 99969995999969997----257--8747--889779999989999999996999899990899---------------
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEE-CCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCCEE
Q ss_conf 22048998721234678889878727999703995999981-99199998899719999908999859999828999789
Q 001477 819 QLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNII 897 (1071)
Q Consensus 819 ~~~~~~~~~~~~~~~~~~~h~~~~i~~i~~s~d~~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~l 897 (1071)
.... .+.+ | ...|.+++|+||++++++++ |+.|++||. +++.+..+.+|...|++++|+| ++++|
T Consensus 376 --------~~~~-~~~~--~-~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~-d~~~l 441 (577)
T 2ymu_A 376 --------QLLQ-TLTG--H-SSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSP-DDQTI 441 (577)
T ss_dssp --------CEEE-EEEC--C-SSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECT-TSSEE
T ss_pred --------CEEE-EECC--C-CCCEEEEEECCCCCEEEEEECCCEEEEEEC-CCCEEEEECCCCCCEEEEEECC-CCCEE
T ss_conf --------7899-8527--8-897489999899999999949998999969-9978989628899757999989-99999
Q ss_pred EEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCCCCCCCCC
Q ss_conf 99838971999995687588984286788569999279998999929993999977877223112310788999998783
Q 001477 898 AIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGE 977 (1071)
Q Consensus 898 a~g~~dg~i~iwd~~~~~~~~~l~~h~~~v~~l~~s~d~~~l~s~~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v 977 (1071)
++++.|+.|++|+. +++.+..+.+|...|++++|+||+++|++++.|+.|++|+.. ++.+ ....+|. ..|
T Consensus 442 ~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~-~~~~-----~~~~~h~---~~v 511 (577)
T 2ymu_A 442 ASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLL-----QTLTGHS---SSV 511 (577)
T ss_dssp EEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETT-SCEE-----EEEECCS---SCE
T ss_pred EEECCCCEEEEEEC-CCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEECCC-CCEE-----EEEECCC---CCE
T ss_conf 99939998999979-998899972789977899996999999999198979999399-9789-----9986799---998
Q ss_pred EEEEECCCCCEEEEE-ECCEEEEEECCCCCEEECCCCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEE
Q ss_conf 079995699899999-79919999579970010289999999926999911996999980799099998
Q 001477 978 TKVQFHNDQTHLLVV-HESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFD 1045 (1071)
Q Consensus 978 ~~~~~s~dg~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~t~~~Dg~i~iwd 1045 (1071)
++++|+|||++|+++ .|+.|++||.+++.+..+ .+|.+.|++++|+|||++|++++.|++|++||
T Consensus 512 ~~l~~s~dg~~l~s~~~dg~v~lwd~~~~~~~~~---~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 512 RGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTL---TGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp EEEEECTTSSCEEEEETTSEEEEECTTSCEEEEE---ECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEEECCCCCEEEEEECCCEEEEEECCCCEEEEE---CCCCCCEEEEEECCCCCEEEEEECCCEEEEEC
T ss_conf 9999918999999998969999996999789897---18888878999968999999990899999969
No 3
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=1.00 E-value=1 Score=553.23 Aligned_cols=542 Identities=16% Similarity=0.181 Sum_probs=364.6
Q ss_pred EEEEEEEC-CCCCEEEEEEECCCCEEEEEECCCCEEEEEECCCCCCCCCCCCEEECCCCCCCCHHHHHCCCCCCCEEEEE
Q ss_conf 03577504-89975799961599929999838770999952887634566513211444651002110366788816999
Q 001477 337 KTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCV 415 (1071)
Q Consensus 337 ~~~~~~~~-h~~~V~~~~fsp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~ 415 (1071)
++....+. |.+.|++++|||+|+ +||+|+.||+|+|||+.+++.... ..+.+|.+.|.+++
T Consensus 49 ~~~~~~~~~h~~~v~~~~~spdg~-~lasg~~d~~v~lWd~~~~~~~~~-----------------~~~~~~~~~v~~v~ 110 (611)
T 1nr0_A 49 LTDTEIYTEHSHQTTVAKTSPSGY-YCASGDVHGNVRIWDTTQTTHILK-----------------TTIPVFSGPVKDIS 110 (611)
T ss_dssp SSCCEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEESSSTTCCEE-----------------EEEECSSSCEEEEE
T ss_pred CCCCEEECCCCCCEEEEEECCCCC-EEEEEECCCCEEEEECCCCCCEEE-----------------EEECCCCCCEEEEE
T ss_conf 242737658998659999999996-899994899789948989841566-----------------76225578448999
Q ss_pred ECCCCCEEEEEECC----CEEEEEEECCCCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCCEEEEECCCCCEEE
Q ss_conf 88999989999599----94999990599831102686335688778999269993599999399839999856881347
Q 001477 416 WGPDGLMLGVAFSK----HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY 491 (1071)
Q Consensus 416 ~spdg~~las~~~d----g~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~ 491 (1071)
|+||+++|++++.+ +.|++|| .+.... .+.+|...|++++|+|++.. .+++++.|++|++||..++++..
T Consensus 111 fs~dg~~l~~~~~~~~~~~~v~~wd--~~~~~~---~l~gh~~~v~~v~f~p~~~~-~l~s~s~D~~v~lwd~~~~~~~~ 184 (611)
T 1nr0_A 111 WDSESKRIAAVGEGRERFGHVFLFD--TGTSNG---NLTGQARAMNSVDFKPSRPF-RIISGSDDNTVAIFEGPPFKFKS 184 (611)
T ss_dssp ECTTSCEEEEEECCSSCSEEEEETT--TCCBCB---CCCCCSSCEEEEEECSSSSC-EEEEEETTSCEEEEETTTBEEEE
T ss_pred ECCCCCEEEEEECCCCCEEEEEEEE--CCCCCC---EECCCCCCCEEEEECCCCCE-EEEEEECCCEEEEEECCCCEEEE
T ss_conf 8999997999989977366999963--899763---25478898369998899982-99999289809999799975766
Q ss_pred EECCCCCCEEEEEECCCCCCCEEEEEECCCEEEEEECCCCCEEEEEC-------CCCCCEEEEEECCCCCEEEEECCCCC
Q ss_conf 82079998579974256894299999269939999767784257734-------99981899999259997999514888
Q 001477 492 TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD-------APGNWCTMMAYSADGTRLFSCGTSKE 564 (1071)
Q Consensus 492 ~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-------~~~~~i~~~~~s~~~~~l~~~~~~~d 564 (1071)
.+.+|...|.+++|+|++ .++++++.|+.|++||+..+.....+. .|...|.+++|+|+++++++++.
T Consensus 185 ~l~~H~~~V~~v~fspdg--~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~--- 259 (611)
T 1nr0_A 185 TFGEHTKFVHSVRYNPDG--SLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASA--- 259 (611)
T ss_dssp EECCCSSCEEEEEECTTS--SEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEET---
T ss_pred EECCCCCCEEEEEECCCC--CEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEEC---
T ss_conf 520025716999997999--989999899919998899982866513664323566787899999799999999908---
Q ss_pred CCCEEEEEECCCCCEEEEEECCCCC--CEEEEEEECCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCCEEEECC
Q ss_conf 9970999968998056776165664--05599993899999998289939999589991249971599999823389738
Q 001477 565 GESHLVEWNESEGAIKRTYSGFRKR--SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK 642 (1071)
Q Consensus 565 ~~~~i~iwd~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 642 (1071)
|+.|++||+.+++.+..+..+... ....+.| ++..+++++.|+.+++|+...++....+.+|. ..|.+++|+|
T Consensus 260 -D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~--~~v~~l~~sp 334 (611)
T 1nr0_A 260 -DKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSISANGFINFVNPELGSIDQVRYGHN--KAITALSSSA 334 (611)
T ss_dssp -TSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEEETTCCEEEEETTTTEEEEEECCCS--SCEEEEEECT
T ss_pred -CCEEEEEECCCCCEEEEECCCCCCCCEEEEEEE--CCCEEEEEECCCCEEEEECCCCCCCEEECCCC--CCEEEEEEEC
T ss_conf -980999968887013440478876640689997--38879999589968999688997446983788--8889999918
Q ss_pred CCCEEEEEECCCCEEEEECCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999999589919999968714666541388322346999997788751233589876543358988889999996212
Q 001477 643 EGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSI 722 (1071)
Q Consensus 643 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 722 (1071)
+++++++++.|+.|++|++.++ ...
T Consensus 335 dg~~l~s~s~D~~v~~Wd~~~~-~~~------------------------------------------------------ 359 (611)
T 1nr0_A 335 DGKTLFSADAEGHINSWDISTG-ISN------------------------------------------------------ 359 (611)
T ss_dssp TSSEEEEEETTSCEEEEETTTC-CEE------------------------------------------------------
T ss_pred CCCEEEEEECCCCEEEEECCCC-CEE------------------------------------------------------
T ss_conf 9998999958984999978879-256------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCEEEECCCCCCCCCEEEEEEECCCCHHHHCCCCCEEEEEECC
Q ss_conf 55687886533466665444557620010478889455206655897677863999970462021111334606887514
Q 001477 723 SSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQ 802 (1071)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~~~~~dg~i~iw~~~ 802 (1071)
......|...+.+++|++++ .+++++.|+.+++|+..
T Consensus 360 ------------------------------------------~~~~~~h~~~v~~~~~s~~~-~l~s~s~d~~v~~w~~~ 396 (611)
T 1nr0_A 360 ------------------------------------------RVFPDVHATMITGIKTTSKG-DLFTVSWDDHLKVVPAG 396 (611)
T ss_dssp ------------------------------------------ECSSCSCSSCEEEEEECTTS-CEEEEETTTEEEEECSS
T ss_pred ------------------------------------------EECCCCCCCEEEEEEECCCC-CEEEEECCCCEEEEECC
T ss_conf ------------------------------------------32166776507899987899-69999848966895468
Q ss_pred CCCCCCCCCCCEEECCEECCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEECCEEEEEECCCCEEEEEEECCCC
Q ss_conf 66679999500011542204899872123467888987872799970399599998199199998899719999908999
Q 001477 803 RTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPP 882 (1071)
Q Consensus 803 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~i~~s~d~~~la~~~dg~i~iwd~~~~~~~~~~~~~~~ 882 (1071)
....... ...... . .....+++++|+++.++++.++.+.+|+. ++ +..+. |..
T Consensus 397 ~~~~~~~-----------------~~~~~~-----~-~~~~~~~~~s~dg~~~~~~~~~~v~~~~~--~~-~~~~~-~~~ 449 (611)
T 1nr0_A 397 GSGVDSS-----------------KAVANK-----L-SSQPLGLAVSADGDIAVAACYKHIAIYSH--GK-LTEVP-ISY 449 (611)
T ss_dssp SSSSCTT-----------------SCCEEE-----C-SSCEEEEEECTTSSCEEEEESSEEEEEET--TE-EEEEE-CSS
T ss_pred CCCCCCC-----------------CEEEEE-----C-CCCCCEEEEECCCCEEEEEECCEEEEEEC--CC-EEEEE-CCC
T ss_conf 8543565-----------------212001-----4-89970799807996999996763999848--94-34640-688
Q ss_pred CEEEEEECCCCCCEEEEEECCCEEEEEECCCCEE--EEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCC-CCEE
Q ss_conf 8599998289997899983897199999568758--898428678856999927999899992999399997787-7223
Q 001477 883 AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEV--KTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK-WEKL 959 (1071)
Q Consensus 883 ~i~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~--~~~l~~h~~~v~~l~~s~d~~~l~s~~~d~~i~iWd~~~-~~~~ 959 (1071)
.+.+++|+| ++++||+|+.|+.|++|++.++.. ... .+|...|++++|+||+++|++++.|++|++|++.+ ++..
T Consensus 450 ~v~~va~sp-dg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~ 527 (611)
T 1nr0_A 450 NSSCVALSN-DKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELA 527 (611)
T ss_dssp CEEEEEECT-TSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEES
T ss_pred CCEEEEEEC-CCCEEEEECCCCEEEEEECCCCCEEEEEC-CCCCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCCCEE
T ss_conf 954999928-99899996899739999945992224101-5778860799998999989999489989998857787223
Q ss_pred EEEEECCCCCCCCCCCCCEEEEECCCCCEEEEE-ECCEEEEEEC-CCCCEEECCCCCCC-CCCEEEEEEECCCCEEEEEE
Q ss_conf 112310788999998783079995699899999-7991999957-99700102899999-99926999911996999980
Q 001477 960 KSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQISVYDS-KLECSRSWSPKDAL-PAPISSAIYSCDGLLVYAGF 1036 (1071)
Q Consensus 960 ~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d~~i~iwd~-~~~~~~~~~~~~~h-~~~v~~~~~s~dg~~l~t~~ 1036 (1071)
.. ....+|. ..|.+++|+|||++|+++ .|+.|++|++ ++.... .....+| ...|++++|+||++ |++++
T Consensus 528 ~~---~~~~~H~---~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~-~~~~~~h~~~~v~~v~fs~d~~-l~s~~ 599 (611)
T 1nr0_A 528 HT---NSWTFHT---AKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHP-IIIKGAHAMSSVNSVIWLNETT-IVSAG 599 (611)
T ss_dssp CC---CCCCCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCC-EEETTSSTTSCEEEEEEEETTE-EEEEE
T ss_pred EE---EEEEECC---CCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCC-CHHHCCCCCCCEEEEEECCCCE-EEEEC
T ss_conf 21---0264046---642589989989979999799729999788755563-2644467656711899858997-99952
Q ss_pred CCCEEEEEECC
Q ss_conf 79909999869
Q 001477 1037 CDGAIGVFDAE 1047 (1071)
Q Consensus 1037 ~Dg~i~iwd~~ 1047 (1071)
.|++|++|+++
T Consensus 600 ~D~~i~lW~~~ 610 (611)
T 1nr0_A 600 QDSNIKFWNVP 610 (611)
T ss_dssp TTSCEEEEECC
T ss_pred CCCCEEEEECC
T ss_conf 88778998444
No 4
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=530.17 Aligned_cols=556 Identities=15% Similarity=0.196 Sum_probs=459.6
Q ss_pred HCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEEECCCCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCCEEEE
Q ss_conf 03667888169998899998999959994999990599831102686335688778999269993599999399839999
Q 001477 403 LLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 482 (1071)
Q Consensus 403 ~~~~h~~~v~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~s~d~~~~~l~s~~~d~~i~iw 482 (1071)
.+.+|.+.|++++|+|+++++++|+.||.|++||+.++..+. .+.+|...|.+++|+|+++ ++++++.|+.|++|
T Consensus 610 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~~~d~~v~vw 684 (1249)
T 3sfz_A 610 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLL---DIKAHEDEVLCCAFSSDDS--YIATCSADKKVKIW 684 (1249)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEE
T ss_pred EEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEE---EECCCCCCEEEEEEECCCC--EEEEEECCCEEEEE
T ss_conf 871666648999987999989999488949999989997888---7606777789999926999--89998189959998
Q ss_pred ECCCCCEEEEECCCCCCEEEEEECCCCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEECCC
Q ss_conf 85688134782079998579974256894299999269939999767784257734999818999992599979995148
Q 001477 483 DVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTS 562 (1071)
Q Consensus 483 d~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~ 562 (1071)
|+.+++.+..+.+|...|.+++|+++.++.++++++.|+.|++||++++.....+..|...|.+++|+|+++++++++.
T Consensus 685 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~- 763 (1249)
T 3sfz_A 685 DSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSA- 763 (1249)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEES-
T ss_pred ECCCCCEEEEECCCCCCEEEEEEECCCCCEEEEEEECCCEEEEEECCCCCHHHEECCCCCCEEEEEEECCCCEEEEEEC-
T ss_conf 7799936899958997379999840899659999808970999989996342201277797889999259998999978-
Q ss_pred CCCCCEEEEEECCCCCEEEEEECCC------------CCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCEEEEEECCC
Q ss_conf 8899709999689980567761656------------6405599993899999998289939999589991249971599
Q 001477 563 KEGESHLVEWNESEGAIKRTYSGFR------------KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG 630 (1071)
Q Consensus 563 ~d~~~~i~iwd~~~~~~~~~~~~~~------------~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 630 (1071)
++.|++||+.++.....+.... ...+.+++|+|++..+++++ ++.+.+|+..++.....+.. +
T Consensus 764 ---dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~~~d~~~~~~~~~~~~-~ 838 (1249)
T 3sfz_A 764 ---DGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHTSGLLAEIHT-G 838 (1249)
T ss_dssp ---SSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTEEEEEETTTCCEEEEEEC-S
T ss_pred ---CCEEEEEECCCCCCCCEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEC-CCCEEEEEECCCCCEEEECC-C
T ss_conf ---985999968888655302023210246776445650179999978998899975-89599999568972357747-8
Q ss_pred CCCCCCEEEECCCCCEEEEEECCCCEEEEECCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99982338973899999999589919999968714666541388322346999997788751233589876543358988
Q 001477 631 GLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTL 710 (1071)
Q Consensus 631 ~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 710 (1071)
+...+.+++|+|++..+++++.+|.|++|+..++ .....+.+|...+..
T Consensus 839 ~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~-~~~~~~~~h~~~v~~------------------------------ 887 (1249)
T 3sfz_A 839 HHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSR-LKVADCRGHLSWVHG------------------------------ 887 (1249)
T ss_dssp SSSCCCEEEECSSTTEEEEECSSSCEEEEETTTT-EEEEEECCCSSCEEE------------------------------
T ss_pred CCCCEEEEEECCCCCEEEEEECCCEEEEEECCCC-CEEEECCCCCCCEEE------------------------------
T ss_conf 7776079998278888999947986999986789-565322787665689------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCEECCCCCCCCCCC--------------------------EE
Q ss_conf 88999999621255687886533466665444-5576200104788894552--------------------------06
Q 001477 711 ERPDRGPPAVSISSLGTIDGSRLVDVKPRVAE-DVDKIKSWRIPDISDPSQI--------------------------KA 763 (1071)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~w~~~~~~~~~~~--------------------------~~ 763 (1071)
..+.+++..++++ .++.+++|++......... ..
T Consensus 888 -------------------v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 948 (1249)
T 3sfz_A 888 -------------------VMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQL 948 (1249)
T ss_dssp -------------------EEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEE
T ss_pred -------------------EEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCEEE
T ss_conf -------------------9998999989999589728988746652010211331036897599868998137762489
Q ss_pred EEC-C---CCCCCCCEEEEEEECCCCHHHHCCCCCEEEEEECCCCCCCCCCCCCEEECCEECCCCCCCCCCCCCCCCCCC
Q ss_conf 655-8---976778639999704620211113346068875146667999950001154220489987212346788898
Q 001477 764 LRL-P---DSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPT 839 (1071)
Q Consensus 764 ~~~-~---~~~~~~~v~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 839 (1071)
... . .......+.+++|+|+++.+++++.+|.+.+|++.. +.... .+.+ |
T Consensus 949 ~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~----------------------~~~~~-~~~~--h- 1002 (1249)
T 3sfz_A 949 IAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPN----------------------NRVFS-SGVG--H- 1002 (1249)
T ss_dssp EEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTT----------------------TSCEE-ECCC--C-
T ss_pred EECCCCEEEECCCCCEEEEEECCCCCEEEEECCCCCEEEEECCC----------------------CCEEE-ECCC--C-
T ss_conf 84476508972567278999958997799986999889997578----------------------72344-3036--7-
Q ss_pred CCCEEEEEEECCCCEEEEEE-CCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCCEEEEEECCCEEEEEECCCCEEEE
Q ss_conf 78727999703995999981-99199998899719999908999859999828999789998389719999956875889
Q 001477 840 EESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKT 918 (1071)
Q Consensus 840 ~~~i~~i~~s~d~~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~ 918 (1071)
...|.+++|+|+++++++++ ||.|++||+.+++.. .+..|...+.+++|+| ++ .+++++.||.|++||+.+++...
T Consensus 1003 ~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~~v~~~~~~~-~~-~l~~~~~dg~v~vwd~~~~~~~~ 1079 (1249)
T 3sfz_A 1003 KKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV-FLQAHQETVKDFRLLQ-DS-RLLSWSFDGTVKVWNVITGRIER 1079 (1249)
T ss_dssp SSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEE-CCBCCSSCEEEEEECS-SS-EEEEEESSSEEEEEETTTTCCCE
T ss_pred CCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCEE-EEECCCCCEEEEEECC-CC-CEEEEECCCCEEEEECCCCCEEE
T ss_conf 771689999899998999869987999987999668-9852787389999908-99-58999788968998889886558
Q ss_pred EECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCCCCCCCCCEEEEECCCCCEEEEE-ECCEE
Q ss_conf 84286788569999279998999929993999977877223112310788999998783079995699899999-79919
Q 001477 919 KLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQI 997 (1071)
Q Consensus 919 ~l~~h~~~v~~l~~s~d~~~l~s~~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d~~i 997 (1071)
.+.+|.+.|++++|+||+.++++++.|++|++|++.+++.. ....+|. ..|++++|+|||++++++ .|+.|
T Consensus 1080 ~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~-----~~l~~h~---~~v~~~~~s~dg~~lat~~~dg~i 1151 (1249)
T 3sfz_A 1080 DFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPL-----HELKGHN---GCVRCSAFSLDGILLATGDDNGEI 1151 (1249)
T ss_dssp EEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCS-----BCCCCCS---SCEEEEEECSSSSEEEEEETTSCC
T ss_pred EECCCCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCCEE-----EEECCCC---CCEEEEEECCCCCEEEEEECCCEE
T ss_conf 87466884899999899998999849994899878985001-----2550687---767999997999989998289979
Q ss_pred EEEEC-CCCCEEECC------CCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCEEEEEECCC
Q ss_conf 99957-997001028------99999999269999119969999807990999986997588895999
Q 001477 998 SVYDS-KLECSRSWS------PKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPS 1058 (1071)
Q Consensus 998 ~iwd~-~~~~~~~~~------~~~~h~~~v~~~~~s~dg~~l~t~~~Dg~i~iwd~~~~~~~~~~~~~ 1058 (1071)
++|++ +++...... ...+|.+.|++++|+|||++|++++ |.|++||+.+++.+..+...
T Consensus 1152 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~--g~v~vwd~~~g~~~~~~~~~ 1217 (1249)
T 3sfz_A 1152 RIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG--GYLKWWNVATGDSSQTFYTN 1217 (1249)
T ss_dssp CEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES--SSEEEBCSSSCBCCCCCCCS
T ss_pred EEEECCCCCEEEEECCCCCCCCCCCCCCEEEEEEECCCCCEEEECC--CEEEEEECCCCCEEEEEECC
T ss_conf 9998899945788514444421025674289999978999899779--85999898889500464004
No 5
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=1.00 E-value=1 Score=523.44 Aligned_cols=535 Identities=13% Similarity=0.159 Sum_probs=425.9
Q ss_pred CCCCEEEEEEECCCCEEEEEECCCCEEEEEECCCCCCCCCCCCEEECCCCCCCCHHHHHCCCCCCCEEEEEECCCCCEEE
Q ss_conf 89975799961599929999838770999952887634566513211444651002110366788816999889999899
Q 001477 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1071)
Q Consensus 345 h~~~V~~~~fsp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~spdg~~la 424 (1071)
+.+.+.+++|+|||+ ++++++ ++.|++|++.+++.... +.+|...|++++|||||++||
T Consensus 17 ~~g~~~~~~~spdg~-~l~~~~-~~~v~l~~~~~~~~~~~-------------------~~~h~~~v~~~~~spdg~~la 75 (611)
T 1nr0_A 17 ARGTAVVLGNTPAGD-KIQYCN-GTSVYTVPVGSLTDTEI-------------------YTEHSHQTTVAKTSPSGYYCA 75 (611)
T ss_dssp CTTCCCCCEECTTSS-EEEEEE-TTEEEEEETTCSSCCEE-------------------ECCCSSCEEEEEECTTSSEEE
T ss_pred CCCCEEEEEECCCCC-EEEECC-CCEEEEECCCCCCCCEE-------------------ECCCCCCEEEEEECCCCCEEE
T ss_conf 068236976679999-799679-99799945787242737-------------------658998659999999996899
Q ss_pred EEECCCEEEEEEECCCCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEEECC----CCEEEEECCCCCEEEEECCCCCCE
Q ss_conf 9959994999990599831102686335688778999269993599999399----839999856881347820799985
Q 001477 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD----KMIKVWDVVAGRKQYTFEGHEAPV 500 (1071)
Q Consensus 425 s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~s~d~~~~~l~s~~~d----~~i~iwd~~~~~~~~~~~~h~~~v 500 (1071)
+|+.|+.|+|||+.++... ....+.+|.++|.+++|+|+++ .+++++.+ +.|++|| .++....+.+|...|
T Consensus 76 sg~~d~~v~lWd~~~~~~~-~~~~~~~~~~~v~~v~fs~dg~--~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v 150 (611)
T 1nr0_A 76 SGDVHGNVRIWDTTQTTHI-LKTTIPVFSGPVKDISWDSESK--RIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAM 150 (611)
T ss_dssp EEETTSEEEEEESSSTTCC-EEEEEECSSSCEEEEEECTTSC--EEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSCE
T ss_pred EEECCCCEEEEECCCCCCE-EEEEECCCCCCEEEEEECCCCC--EEEEEECCCCCEEEEEEEE--CCCCCCEECCCCCCC
T ss_conf 9948997899489898415-6676225578448999899999--7999989977366999963--899763254788983
Q ss_pred EEEEECCCCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEECCCCCCCCEEEEEECCCCCEE
Q ss_conf 79974256894299999269939999767784257734999818999992599979995148889970999968998056
Q 001477 501 YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIK 580 (1071)
Q Consensus 501 ~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~ 580 (1071)
.+++|+|++. ..+++++.|++|++||....+....+..|...|.+++|+|+++++++++. |+.|++||..+++..
T Consensus 151 ~~v~f~p~~~-~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~----D~~i~lwd~~~g~~~ 225 (611)
T 1nr0_A 151 NSVDFKPSRP-FRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGG----DGTIVLYNGVDGTKT 225 (611)
T ss_dssp EEEEECSSSS-CEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEETTTCCEE
T ss_pred EEEEECCCCC-EEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEEC----CCCEEEEECCCCCEE
T ss_conf 6999889998-29999928980999979997576652002571699999799998999989----991999889998286
Q ss_pred EEEE-------CCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCEEEEEECCCC-CCCCCEEEECCCCCEEEEEEC
Q ss_conf 7761-------65664055999938999999982899399995899912499715999-998233897389999999958
Q 001477 581 RTYS-------GFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGG-LPASPRLRFNKEGSLLAVTTS 652 (1071)
Q Consensus 581 ~~~~-------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~ 652 (1071)
..+. +|.. .|.+++|+|++.++++++.|++|++||+.+++.+..+..+.. ......+.| ++..+++++.
T Consensus 226 ~~~~~~~~~~~~h~~-~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~ 302 (611)
T 1nr0_A 226 GVFEDDSLKNVAHSG-SVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSISA 302 (611)
T ss_dssp EECBCTTSSSCSSSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEEET
T ss_pred EEECCCCCCCCCCCC-CEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCCCEEEEEEE--CCCEEEEEEC
T ss_conf 651366432356678-7899999799999999908980999968887013440478876640689997--3887999958
Q ss_pred CCCEEEEECCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99199999687146665413883223469999977887512335898765433589888899999962125568788653
Q 001477 653 DNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSR 732 (1071)
Q Consensus 653 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 732 (1071)
|+.+++|+...+ .....+.
T Consensus 303 d~~i~~~~~~~~-~~~~~~~------------------------------------------------------------ 321 (611)
T 1nr0_A 303 NGFINFVNPELG-SIDQVRY------------------------------------------------------------ 321 (611)
T ss_dssp TCCEEEEETTTT-EEEEEEC------------------------------------------------------------
T ss_pred CCCEEEEECCCC-CCCEEEC------------------------------------------------------------
T ss_conf 996899968899-7446983------------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCEECCCCCCCCCCCEEEECCCCCCCCCEEEEEEECCCCHHHHCCCCCEEEEEECCCCCCCCCCCC
Q ss_conf 34666654445576200104788894552066558976778639999704620211113346068875146667999950
Q 001477 733 LVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKA 812 (1071)
Q Consensus 733 ~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~g~~ 812 (1071)
+|...|.+++|+|+|+++++++.|+.+++|++..
T Consensus 322 -------------------------------------gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~--------- 355 (611)
T 1nr0_A 322 -------------------------------------GHNKAITALSSSADGKTLFSADAEGHINSWDIST--------- 355 (611)
T ss_dssp -------------------------------------CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT---------
T ss_pred -------------------------------------CCCCCEEEEEEECCCCEEEEEECCCCEEEEECCC---------
T ss_conf -------------------------------------7888889999918999899995898499997887---------
Q ss_pred CEEECCEECCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEE-CCEEEEEECCCCEEEE---EEECCCCCEEEEE
Q ss_conf 00115422048998721234678889878727999703995999981-9919999889971999---9908999859999
Q 001477 813 TANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMT---MFMSPPPAATFLA 888 (1071)
Q Consensus 813 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~i~~s~d~~~la~~~-dg~i~iwd~~~~~~~~---~~~~~~~~i~~l~ 888 (1071)
+........+ | ...+.++++++++. +++++ |+.+++|+..+..... ..........+++
T Consensus 356 -------------~~~~~~~~~~--h-~~~v~~~~~s~~~~-l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (611)
T 1nr0_A 356 -------------GISNRVFPDV--H-ATMITGIKTTSKGD-LFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLA 418 (611)
T ss_dssp -------------CCEEECSSCS--C-SSCEEEEEECTTSC-EEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEE
T ss_pred -------------CCEEEECCCC--C-CCEEEEEEECCCCC-EEEEECCCCEEEEECCCCCCCCCCEEEEECCCCCCEEE
T ss_conf -------------9256321667--7-65078999878996-99998489668954688543565212001489970799
Q ss_pred ECCCCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCC
Q ss_conf 82899978999838971999995687588984286788569999279998999929993999977877223112310788
Q 001477 889 FHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPA 968 (1071)
Q Consensus 889 ~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~v~~l~~s~d~~~l~s~~~d~~i~iWd~~~~~~~~~~~~~~~~ 968 (1071)
|+| ++..++++ .++.+++|+ .++ +..+. |...+.+++|+||+++|++++.|++|++|++..++.... .. .
T Consensus 419 ~s~-dg~~~~~~-~~~~v~~~~--~~~-~~~~~-~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~---~~-~ 488 (611)
T 1nr0_A 419 VSA-DGDIAVAA-CYKHIAIYS--HGK-LTEVP-ISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEV---KT-I 488 (611)
T ss_dssp ECT-TSSCEEEE-ESSEEEEEE--TTE-EEEEE-CSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEE---EE-E
T ss_pred EEC-CCCEEEEE-ECCEEEEEE--CCC-EEEEE-CCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCEEEE---EC-C
T ss_conf 807-99699999-676399984--894-34640-688954999928998999968997399999459922241---01-5
Q ss_pred CCCCCCCCCEEEEECCCCCEEEEE-ECCEEEEEECCC-CCEEECCCCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEEC
Q ss_conf 999998783079995699899999-799199995799-700102899999999269999119969999807990999986
Q 001477 969 GRQSPLVGETKVQFHNDQTHLLVV-HESQISVYDSKL-ECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDA 1046 (1071)
Q Consensus 969 ~~~~~~~~v~~~~~s~dg~~l~~~-~d~~i~iwd~~~-~~~~~~~~~~~h~~~v~~~~~s~dg~~l~t~~~Dg~i~iwd~ 1046 (1071)
+|. ..|++++|+|||++|+++ .|+.|++|++.. ..........+|...|++++|+|||++|++++.|++|++|++
T Consensus 489 ~h~---~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~ 565 (611)
T 1nr0_A 489 VHP---AEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNM 565 (611)
T ss_dssp ECS---SCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred CCC---CCEEEEEECCCCCEEEEECCCCCEEEEECCCCCCEEEEEEEEECCCCEEEEEECCCCCEEEEEECCCCEEEEEC
T ss_conf 778---86079999899998999948998999885778722321026404664258998998997999979972999978
Q ss_pred CCCE
Q ss_conf 9975
Q 001477 1047 ETLR 1050 (1071)
Q Consensus 1047 ~~~~ 1050 (1071)
.++.
T Consensus 566 ~~~~ 569 (611)
T 1nr0_A 566 NKPS 569 (611)
T ss_dssp TCTT
T ss_pred CCCC
T ss_conf 8755
No 6
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=1.00 E-value=1 Score=519.57 Aligned_cols=552 Identities=22% Similarity=0.365 Sum_probs=380.6
Q ss_pred CCCCCEEECCCCCCCCCCCCCCC------CCEEEEEEEC-CCCCEEEEEEECCCCEEEEEECCCCEEEEEECCCCCCCCC
Q ss_conf 48853122058888883114884------2203577504-8997579996159992999983877099995288763456
Q 001477 312 TGQSDEVSFAGVAHTPNVYSQDD------LTKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAH 384 (1071)
Q Consensus 312 ~~~~~~v~~~~~~~~~~~~~~d~------~~~~~~~~~~-h~~~V~~~~fsp~g~~lla~g~~dg~i~iwd~~~~~~~~~ 384 (1071)
.+.+.+++|+|+|+.++..+.|. .+++++.++. |.+.|++++|+||++ +|++++.|++|++||.. ++.+..
T Consensus 16 ~~~V~~~a~spdg~~las~~~d~~v~iWd~~~~~~~~l~gh~~~V~~l~fspdg~-~las~~~d~~i~vWd~~-~~~~~~ 93 (577)
T 2ymu_A 16 SSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQ-TIASASDDKTVKLWNRN-GQLLQT 93 (577)
T ss_dssp SSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEETT-SCEEEE
T ss_pred CCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCC-EEEEEECCCEEEEEECC-CCEEEE
T ss_conf 9857999998998999999389989999799978999968989989999989999-99999698979999899-978999
Q ss_pred CCCEEECCCCCCCCHHHHHCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEEECCCCCCCEEEEEECCCCCEEEEEEECC
Q ss_conf 65132114446510021103667888169998899998999959994999990599831102686335688778999269
Q 001477 385 KPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHP 464 (1071)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~s~d 464 (1071)
+.+|...|.+++|+|++++|++++.|+.+++|+..... .....++...+.++.++|+
T Consensus 94 -------------------~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~ 150 (577)
T 2ymu_A 94 -------------------LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL----LQTLTGHSSSVWGVAFSPD 150 (577)
T ss_dssp -------------------ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCE----EEEECCCSSCEEEEEECTT
T ss_pred -------------------EECCCCCEEEEEECCCCCEEEEECCCCCEEECCCCCCE----EEECCCCCCCEEEEEEECC
T ss_conf -------------------97899988999998999989998079833520235520----0110477774355542037
Q ss_pred CCCEEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCE
Q ss_conf 99359999939983999985688134782079998579974256894299999269939999767784257734999818
Q 001477 465 NKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWC 544 (1071)
Q Consensus 465 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i 544 (1071)
+. .+++++.++.+++|+. ..........+...+.++.+.|++ .++++++.|+.|++|+.. .+....+..|...+
T Consensus 151 ~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~v~~w~~~-~~~~~~~~~~~~~v 224 (577)
T 2ymu_A 151 GQ--TIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDG--QTIASASDDKTVKLWNRN-GQLLQTLTGHSSSV 224 (577)
T ss_dssp SS--CEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTS--SCEEEEETTSEEEEECTT-SCEEEEEECCSSCE
T ss_pred CC--CCEECCCCCCEECCCC-CEEEEEECCCCCCCEEEEEECCCC--CEEEEECCCCEEEEEECC-CCEEEEEECCCCCE
T ss_conf 76--3200255531000000-000000026877635665416997--789998599989999499-96899994688988
Q ss_pred EEEEECCCCCEEEEECCCCCCCCEEEEEECCCCCEEEEEECCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCEEE
Q ss_conf 99999259997999514888997099996899805677616566405599993899999998289939999589991249
Q 001477 545 TMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLT 624 (1071)
Q Consensus 545 ~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 624 (1071)
.+++|+|+++++++++. ++.+++|+.. ++.+..+.+|.. .+.+++|+|++..+++++.|+.+++|+.. ++.+.
T Consensus 225 ~~~~~s~dg~~l~~~~~----d~~i~~w~~~-~~~~~~~~~~~~-~v~~v~~~~d~~~l~~~~~d~~i~~w~~~-~~~~~ 297 (577)
T 2ymu_A 225 RGVAFSPDGQTIASASD----DKTVKLWNRN-GQLLQTLTGHSS-SVNGVAFRPDGQTIASASDDKTVKLWNRN-GQLLQ 297 (577)
T ss_dssp EEEEECTTSSCEEEEET----TSCEEEECTT-SCEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEE
T ss_pred EEEEECCCCCEEEEEEC----CCEEEEEECC-CCEEEEEECCCC-CEEEEEECCCCCEEEEEECCCEEEEEECC-CCEEE
T ss_conf 99999799999999918----9989999599-979999806889-87999996899999999599979999489-95899
Q ss_pred EEECCCCCCCCCEEEECCCCCEEEEEECCCCEEEEECCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 97159999982338973899999999589919999968714666541388322346999997788751233589876543
Q 001477 625 TVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSA 704 (1071)
Q Consensus 625 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 704 (1071)
.+..|. ..+.+++|+|++..+++++.|+.+++|+.... ....+.+|...+.
T Consensus 298 ~~~~h~--~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~--~~~~~~~~~~~v~------------------------- 348 (577)
T 2ymu_A 298 TLTGHS--SSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ--HLQTLTGHSSSVW------------------------- 348 (577)
T ss_dssp EECCCS--SCEEEEEECTTSSEEEEEETTSCEEEEETTSC--EEEEECCCSSCEE-------------------------
T ss_pred EEECCC--CCEEEEEECCCCCEEEEEECCCEEEEEECCCC--EEEEEECCCCCEE-------------------------
T ss_conf 970688--97699999999999999969995999969997--2578747889779-------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCEECCCCCCCCCCCEEEECCCCCCCCCEEEEEEECC
Q ss_conf 358988889999996212556878865334666654445-5762001047888945520665589767786399997046
Q 001477 705 AIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAED-VDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNS 783 (1071)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~ 783 (1071)
...+.+++..++++. ++.+++|+... ..... +. .|...|.+++|+|+
T Consensus 349 ------------------------~~~~s~~g~~l~~~~~dg~v~~~~~~~----~~~~~--~~--~~~~~v~~~~~s~d 396 (577)
T 2ymu_A 349 ------------------------GVAFSPDGQTIASASDDKTVKLWNRNG----QLLQT--LT--GHSSSVRGVAFSPD 396 (577)
T ss_dssp ------------------------EEEECTTSSEEEEEETTSEEEEEETTC----CEEEE--EE--CCSSCEEEEEECTT
T ss_pred ------------------------EEEECCCCCEEEEEECCCEEEEECCCC----CEEEE--EC--CCCCCEEEEEECCC
T ss_conf ------------------------999989999999996999899990899----78998--52--78897489999899
Q ss_pred CCHHHHCCCCCEEEEEECCCCCCCCCCCCCEEECCEECCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEE-CCE
Q ss_conf 2021111334606887514666799995000115422048998721234678889878727999703995999981-991
Q 001477 784 GLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGK 862 (1071)
Q Consensus 784 g~~l~~~~~dg~i~iw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~i~~s~d~~~la~~~-dg~ 862 (1071)
++++++++.|+.+++|+... .... .+.+ | ...+.+++|+||++++++++ |+.
T Consensus 397 g~~l~~~~~d~~v~~~~~~~-----------------------~~~~-~~~~--~-~~~v~~~~~s~d~~~l~~~~~d~~ 449 (577)
T 2ymu_A 397 GQTIASASDDKTVKLWNRNG-----------------------QLLQ-TLTG--H-SSSVWGVAFSPDDQTIASASDDKT 449 (577)
T ss_dssp SSCEEEEETTSEEEEECTTC-----------------------CEEE-EEEC--C-SSCEEEEEECTTSSEEEEEETTSE
T ss_pred CCEEEEEECCCEEEEEECCC-----------------------CEEE-EECC--C-CCCEEEEEECCCCCEEEEECCCCE
T ss_conf 99999994999899996999-----------------------7898-9628--8-997579999899999999939998
Q ss_pred EEEEECCCCEEEEEEECCCCCEEEEEECCCCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEE
Q ss_conf 99998899719999908999859999828999789998389719999956875889842867885699992799989999
Q 001477 863 VSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSS 942 (1071)
Q Consensus 863 i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~v~~l~~s~d~~~l~s~ 942 (1071)
|++||. +++.+..+.+|...|++++|+| ++++|++++.|+.|++|+. +++++..+.+|...|++++|+||+++|+++
T Consensus 450 v~~w~~-~~~~~~~~~~~~~~v~~~~~sp-d~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~ 526 (577)
T 2ymu_A 450 VKLWNR-NGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASA 526 (577)
T ss_dssp EEEEET-TSCEEEEEECCSSCEEEEEECT-TSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEE
T ss_pred EEEEEC-CCCEEEEECCCCCCEEEEEECC-CCCEEEEEECCCEEEEECC-CCCEEEEEECCCCCEEEEEECCCCCEEEEE
T ss_conf 999979-9988999727899778999969-9999999919897999939-997899986799998999991899999999
Q ss_pred ECCCCEEEEECCCCCEEEEEEECCCCCCCCCCCCCEEEEECCCCCEEEEE-ECCEEEEEE
Q ss_conf 29993999977877223112310788999998783079995699899999-799199995
Q 001477 943 GADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQISVYD 1001 (1071)
Q Consensus 943 ~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d~~i~iwd 1001 (1071)
+.|+.|++||.. ++.+ ....+|. ..|++++|+|||++|+++ .|+.|++||
T Consensus 527 ~~dg~v~lwd~~-~~~~-----~~~~~h~---~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 527 SDDKTVKLWNRN-GQLL-----QTLTGHS---SSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp ETTSEEEEECTT-SCEE-----EEEECCS---SCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred ECCCEEEEEECC-CCEE-----EEECCCC---CCEEEEEECCCCCEEEEEECCCEEEEEC
T ss_conf 896999999699-9789-----8971888---8878999968999999990899999969
No 7
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=1.00 E-value=1 Score=513.22 Aligned_cols=557 Identities=10% Similarity=0.176 Sum_probs=467.6
Q ss_pred CCCCEEEEEEECCCCEEEEEECCCCEEEEEECCCC----CCCCCCCCEEECCCCCCCCHHHHHCCCCCCC-EEEEEECC-
Q ss_conf 89975799961599929999838770999952887----6345665132114446510021103667888-16999889-
Q 001477 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSR----ERLAHKPFKVWDISAASMPLQNALLNDAAIS-VNRCVWGP- 418 (1071)
Q Consensus 345 h~~~V~~~~fsp~g~~lla~g~~dg~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~i~~sp- 418 (1071)
|.+.|++++|+|+|+ ++++++ ++.|.+|++.++ +.... +.+|... |++++|+|
T Consensus 17 ~~~~v~~~~~spdg~-~l~~~~-~~~v~v~~~~~~~~~~~~~~~-------------------~~~h~~~~v~~~~~sp~ 75 (615)
T 1pgu_A 17 QRNFTTHLSYDPTTN-AIAYPC-GKSAFVRCLDDGDSKVPPVVQ-------------------FTGHGSSVVTTVKFSPI 75 (615)
T ss_dssp CTTCCCCCEEETTTT-EEEEEE-TTEEEEEECCSSCCSSCSEEE-------------------ECTTTTSCEEEEEECSS
T ss_pred CCCCEEEEEECCCCC-EEEEEC-CCEEEEEECCCCCCCCCCCEE-------------------EECCCCCEEEEEEECCC
T ss_conf 658536899889999-799935-984999977788776514318-------------------80578844999997967
Q ss_pred -CCCEEEEEECCCEEEEEEECCCC-----CCCEEEEEECCCCCEEEEEEECCCCCEEEEEEECC----CCEEEEECCCCC
Q ss_conf -99989999599949999905998-----31102686335688778999269993599999399----839999856881
Q 001477 419 -DGLMLGVAFSKHIVHLYTYNPTG-----ELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD----KMIKVWDVVAGR 488 (1071)
Q Consensus 419 -dg~~las~~~dg~i~iwd~~~~~-----~~~~~~~~~~h~~~v~~i~~s~d~~~~~l~s~~~d----~~i~iwd~~~~~ 488 (1071)
++++|++++.||.|++|++.++. .......+..|..+|.+++|+|+++ ++++++.+ +.|++|| .++
T Consensus 76 ~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~~~~~~~~v~~~d--~~~ 151 (615)
T 1pgu_A 76 KGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGR--RLCVVGEGRDNFGVFISWD--SGN 151 (615)
T ss_dssp TTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEECCSSCSEEEEETT--TCC
T ss_pred CCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCCCHHHCCCCCEEEEEEECCCC--EEEEECCCCCCCCEEEEEE--CCC
T ss_conf 899889996489879997688876554455420001112566379999907999--8999316877755799997--898
Q ss_pred EEEEECCCCCCEEEEEECCCCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCC---CEEEEEECCC-CCEEEEECCCCC
Q ss_conf 347820799985799742568942999992699399997677842577349998---1899999259-997999514888
Q 001477 489 KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN---WCTMMAYSAD-GTRLFSCGTSKE 564 (1071)
Q Consensus 489 ~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~---~i~~~~~s~~-~~~l~~~~~~~d 564 (1071)
.+..+.+|...|.+++|+|++. ..+++++.|+.|++||+........+..|.. .+.+++|+|+ ++++++++.
T Consensus 152 ~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--- 227 (615)
T 1pgu_A 152 SLGEVSGHSQRINACHLKQSRP-MRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS--- 227 (615)
T ss_dssp EEEECCSCSSCEEEEEECSSSS-CEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEET---
T ss_pred CCEEEECCCCCEEEEEECCCCC-CEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCEEEEEEECCCCCCEEEEEEC---
T ss_conf 1031306774388999887899-689999579959999699961013202567777428999978977888999868---
Q ss_pred CCCEEEEEECCCCCEEEEE-E---CCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCEEEEEECCC--CCCCCCEE
Q ss_conf 9970999968998056776-1---6566405599993899999998289939999589991249971599--99982338
Q 001477 565 GESHLVEWNESEGAIKRTY-S---GFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG--GLPASPRL 638 (1071)
Q Consensus 565 ~~~~i~iwd~~~~~~~~~~-~---~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~v~~~ 638 (1071)
++.|++||+.+++.+..+ . .|.. .+.+++|+ ++.++++++.|+.|++||+.+++.+..+..+. ....+.++
T Consensus 228 -dg~i~vwd~~~~~~~~~~~~~~~~~~~-~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 304 (615)
T 1pgu_A 228 -DRKISCFDGKSGEFLKYIEDDQEPVQG-GIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGV 304 (615)
T ss_dssp -TCCEEEEETTTCCEEEECCBTTBCCCS-CEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEE
T ss_pred -CCEEEEEECCCCCEEEEECCCCCCCCC-CEEEEEEC-CCCEEEEECCCCCEEEEECCCCCEEEEECCCCCCCCCCEEEE
T ss_conf -980899989999785895254445677-55899981-899799984899489997888927878847877545714699
Q ss_pred EECCCCCEEEEEECCCCEEEEECCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 97389999999958991999996871466654138832234699999778875123358987654335898888999999
Q 001477 639 RFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPP 718 (1071)
Q Consensus 639 ~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 718 (1071)
.|. ++..+++++.+|.+++|+..++ +....+.+|...+..+
T Consensus 305 ~~~-~~~~l~~~~~~g~i~~~d~~~~-~~~~~~~~~~~~v~~~------------------------------------- 345 (615)
T 1pgu_A 305 VAT-GNGRIISLSLDGTLNFYELGHD-EVLKTISGHNKGITAL------------------------------------- 345 (615)
T ss_dssp EEE-ETTEEEEEETTSCEEEEETTEE-EEEEEECCCSSCEEEE-------------------------------------
T ss_pred EEC-CCCEEEEEECCCCEEEEECCCC-CEEEEEECCCCCEEEE-------------------------------------
T ss_conf 918-9976999978997899988899-2889994777878999-------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCEEEECCCCCCCCCEEEEEEECCCCHHHHCCCCCEEEE
Q ss_conf 62125568788653346666544455762001047888945520665589767786399997046202111133460688
Q 001477 719 AVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKL 798 (1071)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~~~~~dg~i~i 798 (1071)
.+ ++ .++++.++.+++|++. .+. ..|...|.+++| +++..+++++.|+.+++
T Consensus 346 ------------~~-~~--l~~~~~dg~i~~w~~~---------~~~---~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~ 397 (615)
T 1pgu_A 346 ------------TV-NP--LISGSYDGRIMEWSSS---------SMH---QDHSNLIVSLDN-SKAQEYSSISWDDTLKV 397 (615)
T ss_dssp ------------ET-TT--TEEEETTSCEEETTTT---------EEE---CCCCSCEEEEEC-CSTTCCEEEETTTEEEE
T ss_pred ------------EE-CC--CEEECCCCEEEEEECH---------HHC---CCCCCCEEEEEE-CCCCEEEEEECCCCEEE
T ss_conf ------------95-67--4898799959998752---------415---755685179997-89867999958997999
Q ss_pred EECCCCCCCCCCCCCEEECCEECCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEECCEEEEEECCCCEEEEEEE
Q ss_conf 75146667999950001154220489987212346788898787279997039959999819919999889971999990
Q 001477 799 WKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFM 878 (1071)
Q Consensus 799 w~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~i~~s~d~~~la~~~dg~i~iwd~~~~~~~~~~~ 878 (1071)
|++..... ...+.+++++|++.+++++.++.+.+|+..+++.+..+.
T Consensus 398 ~~~~~~~~---------------------------------~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (615)
T 1pgu_A 398 NGITKHEF---------------------------------GSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVR 444 (615)
T ss_dssp TTEEEEEC---------------------------------SSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred EECCCCCC---------------------------------CCCCEEEEECCCCCEEEEECCCCEEEEECCCCCEEEECC
T ss_conf 88666763---------------------------------678469998289878999679826999446786655515
Q ss_pred CCCCCEEEEEECCCCCCEEEEEEC-CCEEEEEECCCCEEE-EEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCC
Q ss_conf 899985999982899978999838-971999995687588-984286788569999279998999929993999977877
Q 001477 879 SPPPAATFLAFHPQDNNIIAIGME-DSSVQIYNVRVDEVK-TKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKW 956 (1071)
Q Consensus 879 ~~~~~i~~l~~sp~~~~~la~g~~-dg~i~iwd~~~~~~~-~~l~~h~~~v~~l~~s~d~~~l~s~~~d~~i~iWd~~~~ 956 (1071)
+...+.+++|+ ++++++++. |+.|++|++.+++.. ..+.+|...|++++|+|++++|++++.|+.|++|++.++
T Consensus 445 -~~~~~~~~~~~---~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~ 520 (615)
T 1pgu_A 445 -LNSPGSAVSLS---QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSR 520 (615)
T ss_dssp -CSSCEEEEEEC---SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred -CCCCCEEEEEC---CCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCEEEECCCCCEEEEEECCCC
T ss_conf -67872077883---88899965689869999888854353336776575079999899998998179985998657777
Q ss_pred CEEEEEEECCCCC-CCCCCCCCEEEEECC----------CCCEEEEE-ECCEEEEEEC-CC-CCEEECCCCCCCCCCEEE
Q ss_conf 2231123107889-999987830799956----------99899999-7991999957-99-700102899999999269
Q 001477 957 EKLKSRFIQAPAG-RQSPLVGETKVQFHN----------DQTHLLVV-HESQISVYDS-KL-ECSRSWSPKDALPAPISS 1022 (1071)
Q Consensus 957 ~~~~~~~~~~~~~-~~~~~~~v~~~~~s~----------dg~~l~~~-~d~~i~iwd~-~~-~~~~~~~~~~~h~~~v~~ 1022 (1071)
+.+.. ..+ |. ..+++++|+| ++++|+++ .|+.|++|++ +. ..+..+ .+|...|++
T Consensus 521 ~~~~~-----~~~~h~---~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~---~~h~~~v~~ 589 (615)
T 1pgu_A 521 EVKTS-----RWAFRT---SKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKAL---NAHKDGVNN 589 (615)
T ss_dssp EEEEC-----CSCCCS---SCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEET---TSSTTCEEE
T ss_pred CCEEE-----EECCCC---CCEEEEEECCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCCCEECHHH---HCCCCCEEE
T ss_conf 62467-----604788---7146999768323453324688889998179719999778885403113---359430589
Q ss_pred EEEECCCCEEEEEECCCEEEEEECCCC
Q ss_conf 999119969999807990999986997
Q 001477 1023 AIYSCDGLLVYAGFCDGAIGVFDAETL 1049 (1071)
Q Consensus 1023 ~~~s~dg~~l~t~~~Dg~i~iwd~~~~ 1049 (1071)
++|+||++ |++++.||.|++|+++++
T Consensus 590 l~~s~~~~-l~s~~~d~~v~iw~~~~~ 615 (615)
T 1pgu_A 590 LLWETPST-LVSSGADACIKRWNVVLE 615 (615)
T ss_dssp EEEEETTE-EEEEETTSCEEEEEEC--
T ss_pred EEECCCCC-EEEECCCCEEEEEEEECC
T ss_conf 99738997-288459963999960159
No 8
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=506.01 Aligned_cols=606 Identities=11% Similarity=0.062 Sum_probs=433.7
Q ss_pred EEEECCCCCEEEEEEECCCCEEEEEECCCCEEEEEECCCCCCCCCCCCEEECCCCCCCCHHHHHCCCCCCCEEEEEECCC
Q ss_conf 77504899757999615999299998387709999528876345665132114446510021103667888169998899
Q 001477 340 VRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD 419 (1071)
Q Consensus 340 ~~~~~h~~~V~~~~fsp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~spd 419 (1071)
.....|.+.|++++|+|+++ +||+|+.||.|+||+..+.+... ...|...|.+++|+|
T Consensus 11 ~~~~gh~~~V~~lafspdg~-~lAsgs~Dg~I~lw~~~~~~~~~--------------------~~~~~~~V~~l~fsp- 68 (902)
T 2oaj_A 11 TNKYGMSSKPIAAAFDFTQN-LLAIATVTGEVHIYGQQQVEVVI--------------------KLEDRSAIKEMRFVK- 68 (902)
T ss_dssp EEEEECSSCEEEEEEETTTT-EEEEEETTSEEEEECSTTCEEEE--------------------ECSSCCCEEEEEEET-
T ss_pred CCCCCCCCCCEEEEECCCCC-EEEEEECCCEEEEEECCCCEEEE--------------------ECCCCCCEEEEEECC-
T ss_conf 02168899848999979999-89999297989999689947999--------------------868999779999908-
Q ss_pred CCEEEEEECCCEEEEEEECCCCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCCEEEEECCCCCEE---------
Q ss_conf 99899995999499999059983110268633568877899926999359999939983999985688134---------
Q 001477 420 GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ--------- 490 (1071)
Q Consensus 420 g~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~--------- 490 (1071)
+++|++++.|+.|++||+.+++.+. .+. |...|++++|+|+++ ++++|+.|+.|++||+.+++..
T Consensus 69 g~~L~S~s~D~~v~lWd~~~~~~~~---~~~-~~~~V~~v~~sp~g~--~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~ 142 (902)
T 2oaj_A 69 GIYLVVINAKDTVYVLSLYSQKVLT---TVF-VPGKITSIDTDASLD--WMLIGLQNGSMIVYDIDRDQLSSFKLDNLQK 142 (902)
T ss_dssp TTEEEEEETTCEEEEEETTTCSEEE---EEE-CSSCEEEEECCTTCS--EEEEEETTSCEEEEETTTTEEEEEEECCHHH
T ss_pred CCEEEEEECCCEEEEEECCCCCEEE---EEC-CCCCEEEEEECCCCC--EEEEECCCCCEEEEECCCCCCCCCEECCCCC
T ss_conf 9889999895959999899996899---974-899879999879999--8999949992999999999626503043210
Q ss_pred --EEECCCCCCEEEEEECCCCCCCEEEEEECCCEEEEEECCCCCEEEEECCC------------------CCCEEEEEEC
Q ss_conf --78207999857997425689429999926993999976778425773499------------------9818999992
Q 001477 491 --YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP------------------GNWCTMMAYS 550 (1071)
Q Consensus 491 --~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~------------------~~~i~~~~~s 550 (1071)
..+.+|.+.|.+++|+|+. +..+++++.|+.| +||++.......+..+ ...|.+++|+
T Consensus 143 ~~~~~~~h~~~V~sl~~sp~~-~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fs 220 (902)
T 2oaj_A 143 SSFFPAARLSPIVSIQWNPRD-IGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYH 220 (902)
T ss_dssp HHTCSSSCCCCCCEEEEETTE-EEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEEC
T ss_pred CCCCCCCCCCCEEEEEECCCC-CCEEEEEECCCCE-EEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEC
T ss_conf 002544578973899976699-9989999189849-99877896579983355776777654433234567776899985
Q ss_pred CCCCEEEEECCCCCCCCEEEEEECCCCCEEEE--EE---CC------------CCCCEEEEEEEC----CC-CEEEEEEC
Q ss_conf 59997999514888997099996899805677--61---65------------664055999938----99-99999828
Q 001477 551 ADGTRLFSCGTSKEGESHLVEWNESEGAIKRT--YS---GF------------RKRSLGVVQFDT----TR-NRFLAAGD 608 (1071)
Q Consensus 551 ~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~--~~---~~------------~~~~i~~~~~~~----~~-~~l~~~~~ 608 (1071)
|+|.++++++. |+.|++||+++++.+.. +. .| ....|.+++|++ ++ ..+++++.
T Consensus 221 pdg~~lasgs~----Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~ 296 (902)
T 2oaj_A 221 PNSLHIITIHE----DNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKS 296 (902)
T ss_dssp TTSSEEEEEET----TCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEEC
T ss_pred CCCCEEEEEEC----CCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEECCC
T ss_conf 99999999989----99399998789968888850123457877767888855567745799973499988789996887
Q ss_pred C-----CCEEEEECC------------------CCCEEEEEECCCCCCCCCEEEECC----------CCCEEEEEECCCC
Q ss_conf 9-----939999589------------------991249971599999823389738----------9999999958991
Q 001477 609 E-----FQIKFWDMD------------------NMNMLTTVDADGGLPASPRLRFNK----------EGSLLAVTTSDNG 655 (1071)
Q Consensus 609 d-----g~i~iwd~~------------------~~~~~~~~~~~~~~~~v~~~~~s~----------~~~~l~~~~~dg~ 655 (1071)
+ ..+.+|++. ..+....+... +...+..+.+.+ +...+++++.||.
T Consensus 297 ~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~ 375 (902)
T 2oaj_A 297 ISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLP-TNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGE 375 (902)
T ss_dssp STTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCS-SSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSC
T ss_pred CCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHCCCCCEEEEECC-CCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCCC
T ss_conf 77788852899954789875554255654664174522787418-99954799997788988677878506999917984
Q ss_pred EEEEECCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999687146665413883223469999977887512335898765433589888899999962125568788653346
Q 001477 656 IKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVD 735 (1071)
Q Consensus 656 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 735 (1071)
+++|++.++.........+..... ...++.
T Consensus 376 l~~~~~~~g~~~~~~~~~~~~l~~-----------------------------------~~~~v~--------------- 405 (902)
T 2oaj_A 376 IETMLYPSGIFTDKASLFPQNLSW-----------------------------------LRPLAT--------------- 405 (902)
T ss_dssp EEEEETTTCCEECCGGGSCGGGTT-----------------------------------BTTBEE---------------
T ss_pred EEEEECCCCCCCCCCCCCCCCCCC-----------------------------------CCCCEE---------------
T ss_conf 899978999855655568985223-----------------------------------589724---------------
Q ss_pred CCCCCCCCCCCCCEECCCCCCCCCCCEEEECCCCCCCCCEEEEEEECCCCHHHHCCCCCEEEEEECCCCCCCCCCCCCEE
Q ss_conf 66654445576200104788894552066558976778639999704620211113346068875146667999950001
Q 001477 736 VKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATAN 815 (1071)
Q Consensus 736 ~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~g~~~~~ 815 (1071)
.++.......+|+......... ...+ .+|...+..++|+|+++.+++++.|++|++||+..+..... .
T Consensus 406 ---~~~~s~~~~~~w~~~~~~~~~~--~~~l--~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~-~---- 473 (902)
T 2oaj_A 406 ---TSMAASVPNKLWLGALSAAQNK--DYLL--KGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDN-A---- 473 (902)
T ss_dssp ---EEEEEEEEHHHHHHHHHTTBCC--CCSC--CCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTT-B----
T ss_pred ---EEEEEECCHHHHHHHHHCCCCC--CCCC--CCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCCCCCCC-C----
T ss_conf ---8999974999998888604699--9754--57857787533366675899965898389997877645677-3----
Q ss_pred ECCEECCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEE-CCEEEEEECCCC-----------------------
Q ss_conf 15422048998721234678889878727999703995999981-991999988997-----------------------
Q 001477 816 VAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTF----------------------- 871 (1071)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~i~~s~d~~~la~~~-dg~i~iwd~~~~----------------------- 871 (1071)
.+... ... ..+..| ...|.+++|+||+++||+|+ ||+|++|++.++
T Consensus 474 ----~~~~~---l~~--~~~~~h-~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (902)
T 2oaj_A 474 ----SFEVN---LSR--TLNKAK-ELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSL 543 (902)
T ss_dssp ----CEEEE---HHH--HTTCSS-SCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCG
T ss_pred ----EEEEE---CHH--HCCCCC-CCCEEEEEECCCCCEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCC
T ss_conf ----67750---154--137788-87646999638999699994585799999248655575455778665113455134
Q ss_pred ----------------------EEEEEEECCCCCEEEEEECCCCCCEEEEEECCCEEEEEECCCCEEEE-----EEC-CC
Q ss_conf ----------------------19999908999859999828999789998389719999956875889-----842-86
Q 001477 872 ----------------------KVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKT-----KLK-GH 923 (1071)
Q Consensus 872 ----------------------~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~-----~l~-~h 923 (1071)
+++..+.+|.+.|++++||| +| +||+|+.|++|++||+.+...+. .+. +|
T Consensus 544 ~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSp-dG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh 621 (902)
T 2oaj_A 544 NNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSN-IG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQ 621 (902)
T ss_dssp GGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECB-TS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECC-CC-EEEEEECCCCEEEEECCCCEEEEEEEHHHHCCCC
T ss_conf 679654322423689887776014699986888677999648-76-8999958976999988898399970246726466
Q ss_pred CCCEEEEEEC-----CCC---CEEEEEECCCCEEEEEC---CCCCEEEEEEECCCCCCCCCCCCCEEEE-EC--------
Q ss_conf 7885699992-----799---98999929993999977---8772231123107889999987830799-95--------
Q 001477 924 QNRITGLAFS-----PTL---NALVSSGADAQLCMWSI---DKWEKLKSRFIQAPAGRQSPLVGETKVQ-FH-------- 983 (1071)
Q Consensus 924 ~~~v~~l~~s-----~d~---~~l~s~~~d~~i~iWd~---~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~s-------- 983 (1071)
.+.|++++|+ ||| .+|++++.|++|++|++ .+|+......-.....+. ..|..++ |+
T Consensus 622 ~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~~~~~~~---~~v~~i~~~~~~~~~~~~ 698 (902)
T 2oaj_A 622 SACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQLMDITNVTSK---GPIHKIDAFSKETKSSCL 698 (902)
T ss_dssp CCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEEEEEEEECCSS---CCCCEEEEEETTTCCBCB
T ss_pred CCCEEEEEEEEEECCCCCCCCEEEEEEECCCCEEEEEEECCCCCCEEEEECCCEECCCC---CCEEEEEEEECCCCCCCC
T ss_conf 66139999999841789876338999956873999999558998689996672440788---964799858668797366
Q ss_pred --------------CCCCEEEEEECCEEEEEEC-CCCCEEECCCCCCCCCCEEEE---E------EECCCCEEEEEECCC
Q ss_conf --------------6998999997991999957-997001028999999992699---9------911996999980799
Q 001477 984 --------------NDQTHLLVVHESQISVYDS-KLECSRSWSPKDALPAPISSA---I------YSCDGLLVYAGFCDG 1039 (1071)
Q Consensus 984 --------------~dg~~l~~~~d~~i~iwd~-~~~~~~~~~~~~~h~~~v~~~---~------~s~dg~~l~t~~~Dg 1039 (1071)
+++..|+ +.+..|++|++ ++++....... ...+.++ . |++++..|++.+.||
T Consensus 699 a~~~~~~~l~~~~~~~~~~l~-~~~~~ir~~~~~~~k~~~k~~~~---~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~g 774 (902)
T 2oaj_A 699 ATIPKMQNLSKGLCIPGIVLI-TGFDDIRLITLGKSKSTHKGFKY---PLAATGLSYISTVEKNNDRKNLTVIITLEING 774 (902)
T ss_dssp CBHHHHHGGGGTCCCCEEEEE-ECSSEEEEECTTCCCEEEEECSS---CEEEEEEEEEEEECSSSCEEEEEEEEEEETTS
T ss_pred CCHHHHHCCCCCCCCCEEEEE-EECCCEEEEECCCCCCEEEECCC---CEEEEEEEEEEECCCCCCCCCCEEEEEEECCC
T ss_conf 887897255778877739999-93540599967533512367256---20144777887013555446736999992799
Q ss_pred EEEEEECCCCEEEEEECCCCCC
Q ss_conf 0999986997588895999655
Q 001477 1040 AIGVFDAETLRFRCRIGPSAYI 1061 (1071)
Q Consensus 1040 ~i~iwd~~~~~~~~~~~~~~~~ 1061 (1071)
+|++|++++++++..+..+...
T Consensus 775 ~i~~~s~p~l~~~~~~~~~~~~ 796 (902)
T 2oaj_A 775 HLRVFTIPDFKEQMSEHIPFPI 796 (902)
T ss_dssp EEEEEETTTCCEEEEEECSSCC
T ss_pred CEEEEECCCHHHHHHCCCCCCC
T ss_conf 5999978564778416588602
No 9
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=1.00 E-value=1 Score=477.79 Aligned_cols=527 Identities=15% Similarity=0.203 Sum_probs=426.2
Q ss_pred EEEEEEC-CCCC-EEEEEEEC--CCCEEEEEECCCCEEEEEECCCCCCCCCCCCEEECCCCCCCCHHHHHCCCCCCCEEE
Q ss_conf 3577504-8997-57999615--999299998387709999528876345665132114446510021103667888169
Q 001477 338 TVVRTLN-QGSN-VMSMDFHP--QQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNR 413 (1071)
Q Consensus 338 ~~~~~~~-h~~~-V~~~~fsp--~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 413 (1071)
+....+. |.+. |++++|+| +++ ++++|+.||.|++|++.+++...... ......+..|...|.+
T Consensus 54 ~~~~~~~~h~~~~v~~~~~sp~~~~~-~l~s~~~dg~v~vw~~~~~~~~~~~~-----------~~~~~~~~~~~~~v~~ 121 (615)
T 1pgu_A 54 PPVVQFTGHGSSVVTTVKFSPIKGSQ-YLCSGDESGKVIVWGWTFDKESNSVE-----------VNVKSEFQVLAGPISD 121 (615)
T ss_dssp CSEEEECTTTTSCEEEEEECSSTTCC-EEEEEETTSEEEEEEEEEEGGGTEEE-----------EEEEEEEECCSSCEEE
T ss_pred CCCEEEECCCCCEEEEEEECCCCCCC-EEEEECCCCEEEEEECCCCCCCCCCC-----------CCCCCHHHCCCCCEEE
T ss_conf 14318805788449999979678998-89996489879997688876554455-----------4200011125663799
Q ss_pred EEECCCCCEEEEEECC----CEEEEEEECCCCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCCEEEEECCCCCE
Q ss_conf 9988999989999599----949999905998311026863356887789992699935999993998399998568813
Q 001477 414 CVWGPDGLMLGVAFSK----HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK 489 (1071)
Q Consensus 414 i~~spdg~~las~~~d----g~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~ 489 (1071)
++|+|+++++++++.+ +.|.+|+ .++... .+.+|...|.+++|+|+++. .+++++.|+.|++||+.+++.
T Consensus 122 ~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~---~~~~~~~~v~~~~~~~~~~~-~l~~~~~d~~v~vwd~~~~~~ 195 (615)
T 1pgu_A 122 ISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLG---EVSGHSQRINACHLKQSRPM-RSMTVGDDGSVVFYQGPPFKF 195 (615)
T ss_dssp EEECTTSSEEEEEECCSSCSEEEEETT--TCCEEE---ECCSCSSCEEEEEECSSSSC-EEEEEETTTEEEEEETTTBEE
T ss_pred EEEECCCCEEEEECCCCCCCCEEEEEE--CCCCCE---EEECCCCCEEEEEECCCCCC-EEEEEECCCCEEEEECCCCCE
T ss_conf 999079998999316877755799997--898103---13067743889998878996-899995799599996999610
Q ss_pred EEEECCCCC---CEEEEEECCCCCCCEEEEEECCCEEEEEECCCCCEEEEE-C---CCCCCEEEEEECCCCCEEEEECCC
Q ss_conf 478207999---857997425689429999926993999976778425773-4---999818999992599979995148
Q 001477 490 QYTFEGHEA---PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY-D---APGNWCTMMAYSADGTRLFSCGTS 562 (1071)
Q Consensus 490 ~~~~~~h~~---~v~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~---~~~~~i~~~~~s~~~~~l~~~~~~ 562 (1071)
+..+.+|.. .|.+++|+|+ ++.++++++.|+.|++||+..++....+ . .|...+.+++|+ ++.++++++.
T Consensus 196 ~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~- 272 (615)
T 1pgu_A 196 SASDRTHHKQGSFVRDVEFSPD-SGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGA- 272 (615)
T ss_dssp EEEECSSSCTTCCEEEEEECST-TCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEET-
T ss_pred EEEECCCCCCCCEEEEEEECCC-CCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCCCCCEEEEEEC-CCCEEEEECC-
T ss_conf 1320256777742899997897-788899986898089998999978589525444567755899981-8997999848-
Q ss_pred CCCCCEEEEEECCCCCEEEEEECCC---CCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCCEEE
Q ss_conf 8899709999689980567761656---6405599993899999998289939999589991249971599999823389
Q 001477 563 KEGESHLVEWNESEGAIKRTYSGFR---KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLR 639 (1071)
Q Consensus 563 ~d~~~~i~iwd~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 639 (1071)
++.+++||+.+++.+..+..+. ...+.++.|. ++.++++++.|+.|++||+.+++.+..+..|. ..+.+++
T Consensus 273 ---d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~--~~v~~~~ 346 (615)
T 1pgu_A 273 ---DATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTISGHN--KGITALT 346 (615)
T ss_dssp ---TSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEECCCS--SCEEEEE
T ss_pred ---CCCEEEEECCCCCEEEEECCCCCCCCCCEEEEEEC-CCCEEEEEECCCCEEEEECCCCCEEEEEECCC--CCEEEEE
T ss_conf ---99489997888927878847877545714699918-99769999789978999888992889994777--8789999
Q ss_pred ECCCCCEEEEEECCCCEEEEECCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 73899999999589919999968714666541388322346999997788751233589876543358988889999996
Q 001477 640 FNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPA 719 (1071)
Q Consensus 640 ~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 719 (1071)
| |+ +++++.||.|++|+.. .+. .+|...+..+
T Consensus 347 ~-~~---l~~~~~dg~i~~w~~~----~~~--~~~~~~v~~~-------------------------------------- 378 (615)
T 1pgu_A 347 V-NP---LISGSYDGRIMEWSSS----SMH--QDHSNLIVSL-------------------------------------- 378 (615)
T ss_dssp T-TT---TEEEETTSCEEETTTT----EEE--CCCCSCEEEE--------------------------------------
T ss_pred E-CC---CEEECCCCEEEEEECH----HHC--CCCCCCEEEE--------------------------------------
T ss_conf 5-67---4898799959998752----415--7556851799--------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCEEEECCCCCCCCCEEEEEEECCCCHHHHCCCCCEEEEE
Q ss_conf 21255687886533466665444557620010478889455206655897677863999970462021111334606887
Q 001477 720 VSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLW 799 (1071)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~~~~~dg~i~iw 799 (1071)
.+.+....++++.++.+++|++...... ..+..++++|++..++++ .++.+.+|
T Consensus 379 -----------~~~~~~~l~~~~~d~~i~~~~~~~~~~~--------------~~~~~~~~s~~~~~~~~~-~~~~~~~~ 432 (615)
T 1pgu_A 379 -----------DNSKAQEYSSISWDDTLKVNGITKHEFG--------------SQPKVASANNDGFTAVLT-NDDDLLIL 432 (615)
T ss_dssp -----------ECCSTTCCEEEETTTEEEETTEEEEECS--------------SCEEEEEECSSSEEEEEE-TTSEEEEE
T ss_pred -----------EECCCCEEEEEECCCCEEEEECCCCCCC--------------CCCEEEEECCCCCEEEEE-CCCCEEEE
T ss_conf -----------9789867999958997999886667636--------------784699982898789996-79826999
Q ss_pred ECCCCCCCCCCCCCEEECCEECCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEE--CCEEEEEECCCCEEE-EE
Q ss_conf 514666799995000115422048998721234678889878727999703995999981--991999988997199-99
Q 001477 800 KWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS--GGKVSLFNMMTFKVM-TM 876 (1071)
Q Consensus 800 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~i~~s~d~~~la~~~--dg~i~iwd~~~~~~~-~~ 876 (1071)
+.. .+..... +. | ...+.+++++ ++++++++ ++.|++||+.+++.. ..
T Consensus 433 ~~~----------------------~~~~~~~-~~---~-~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~~~~~~~ 483 (615)
T 1pgu_A 433 QSF----------------------TGDIIKS-VR---L-NSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDLEVSFDL 483 (615)
T ss_dssp ETT----------------------TCCEEEE-EE---C-SSCEEEEEEC--SSEEEEEETTTSCEEEEETTEEEEEEEC
T ss_pred ECC----------------------CCCEEEE-CC---C-CCCCEEEEEC--CCEEEEEECCCCEEEEEECCCCCCCCCC
T ss_conf 446----------------------7866555-15---6-7872077883--8889996568986999988885435333
Q ss_pred EECCCCCEEEEEECCCCCCEEEEEECCCEEEEEECCCCEEEEEECC-CCCCEEEEEECC----------CCCEEEEEECC
Q ss_conf 9089998599998289997899983897199999568758898428-678856999927----------99989999299
Q 001477 877 FMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKG-HQNRITGLAFSP----------TLNALVSSGAD 945 (1071)
Q Consensus 877 ~~~~~~~i~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~-h~~~v~~l~~s~----------d~~~l~s~~~d 945 (1071)
+..|...|++++|+| ++++|++++.||.|++|++.+++++..+.+ |...|++++|+| ++.+|++++.|
T Consensus 484 ~~~~~~~v~~~~~s~-~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~d 562 (615)
T 1pgu_A 484 KTPLRAKPSYISISP-SETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLD 562 (615)
T ss_dssp SSCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETT
T ss_pred CCCCCCCEEEEEECC-CCCEEEECCCCCEEEEEECCCCCCEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCEEEEECCC
T ss_conf 677657507999989-9998998179985998657777624676047887146999768323453324688889998179
Q ss_pred CCEEEEECCCCCEEEEEEECCCCCCCCCCCCCEEEEECCCCCEEEE-EECCEEEEEECC
Q ss_conf 9399997787722311231078899999878307999569989999-979919999579
Q 001477 946 AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDSK 1003 (1071)
Q Consensus 946 ~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~i~iwd~~ 1003 (1071)
+.|++|++.++.. .+....+|. ..|.+++|+|+++ |++ +.|+.|++|++.
T Consensus 563 g~i~iw~~~~~~~----~~~~~~~h~---~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~ 613 (615)
T 1pgu_A 563 TNIFIYSVKRPMK----IIKALNAHK---DGVNNLLWETPST-LVSSGADACIKRWNVV 613 (615)
T ss_dssp SCEEEEESSCTTC----CEEETTSST---TCEEEEEEEETTE-EEEEETTSCEEEEEEC
T ss_pred CCEEEEECCCCCE----ECHHHHCCC---CCEEEEEECCCCC-EEEECCCCEEEEEEEE
T ss_conf 7199997788854----031133594---3058999738997-2884599639999601
No 10
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=457.96 Aligned_cols=624 Identities=10% Similarity=0.051 Sum_probs=410.1
Q ss_pred CCCCCCEEECCCCCCCCCCCCCC-------CCCEEEEEEECCCCCEEEEEEECCCCEEEEEECCCCEEEEEECCCCCCCC
Q ss_conf 34885312205888888311488-------42203577504899757999615999299998387709999528876345
Q 001477 311 RTGQSDEVSFAGVAHTPNVYSQD-------DLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLA 383 (1071)
Q Consensus 311 ~~~~~~~v~~~~~~~~~~~~~~d-------~~~~~~~~~~~h~~~V~~~~fsp~g~~lla~g~~dg~i~iwd~~~~~~~~ 383 (1071)
+...+.+++|+|++..+++...| ....+....+.|...|++++|+| |+ +|++++.|++|++||+.+++.+.
T Consensus 16 h~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fsp-g~-~L~S~s~D~~v~lWd~~~~~~~~ 93 (902)
T 2oaj_A 16 MSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVK-GI-YLVVINAKDTVYVLSLYSQKVLT 93 (902)
T ss_dssp CSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECSSCCCEEEEEEET-TT-EEEEEETTCEEEEEETTTCSEEE
T ss_pred CCCCCEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEECCCCCCEEEEEECC-CC-EEEEEECCCEEEEEECCCCCEEE
T ss_conf 89984899997999989999297989999689947999868999779999908-98-89999895959999899996899
Q ss_pred CCCCEEECCCCCCCCHHHHHCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEEECCCCCCCEE--------EEEECCCCC
Q ss_conf 665132114446510021103667888169998899998999959994999990599831102--------686335688
Q 001477 384 HKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQH--------LEIDAHVGG 455 (1071)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~--------~~~~~h~~~ 455 (1071)
. +. |.+.|++++|+|+++++++|+.||.|++||+.++...... ..+.+|.++
T Consensus 94 ~-------------------~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~ 153 (902)
T 2oaj_A 94 T-------------------VF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSP 153 (902)
T ss_dssp E-------------------EE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCC
T ss_pred E-------------------EC-CCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCCCCCCEECCCCCCCCCCCCCCCC
T ss_conf 9-------------------74-899879999879999899994999299999999962650304321000254457897
Q ss_pred EEEEEEECCCCCEEEEEEECCCCEEEEECCCCCEEEEECCC------------------CCCEEEEEECCCCCCCEEEEE
Q ss_conf 77899926999359999939983999985688134782079------------------998579974256894299999
Q 001477 456 VNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGH------------------EAPVYSVCPHHKESIQFIFST 517 (1071)
Q Consensus 456 v~~i~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h------------------~~~v~~i~~~~~~~~~~l~s~ 517 (1071)
|++++|+|++.. .+++|+.|+.| +||+++++.+..+.+| ...|.+++|+|++ .+++++
T Consensus 154 V~sl~~sp~~~~-~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg--~~lasg 229 (902)
T 2oaj_A 154 IVSIQWNPRDIG-TVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNS--LHIITI 229 (902)
T ss_dssp CCEEEEETTEEE-EEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTS--SEEEEE
T ss_pred EEEEEECCCCCC-EEEEEECCCCE-EEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCC--CEEEEE
T ss_conf 389997669999-89999189849-99877896579983355776777654433234567776899985999--999999
Q ss_pred ECCCEEEEEECCCCCEEEE--E---CC-------------CCCCEEEEEECC----CC-CEEEEECCCCC-CCCEEEEEE
Q ss_conf 2699399997677842577--3---49-------------998189999925----99-97999514888-997099996
Q 001477 518 AIDGKIKAWLYDYLGSRVD--Y---DA-------------PGNWCTMMAYSA----DG-TRLFSCGTSKE-GESHLVEWN 573 (1071)
Q Consensus 518 ~~d~~i~iwd~~~~~~~~~--~---~~-------------~~~~i~~~~~s~----~~-~~l~~~~~~~d-~~~~i~iwd 573 (1071)
+.|+.|++||+++++.... + .. +...|.+++|++ ++ ..+++++.+.+ ....+.+|+
T Consensus 230 s~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~ 309 (902)
T 2oaj_A 230 HEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMID 309 (902)
T ss_dssp ETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEE
T ss_pred ECCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEECCCCCCCCCCEEEEEE
T ss_conf 89993999987899688888501234578777678888555677457999734999887899968877778885289995
Q ss_pred CC------------------CCCEEEEEECCCCCCEEEEEEEC----------CCCEEEEEECCCCEEEEECCCCCEEEE
Q ss_conf 89------------------98056776165664055999938----------999999982899399995899912499
Q 001477 574 ES------------------EGAIKRTYSGFRKRSLGVVQFDT----------TRNRFLAAGDEFQIKFWDMDNMNMLTT 625 (1071)
Q Consensus 574 ~~------------------~~~~~~~~~~~~~~~i~~~~~~~----------~~~~l~~~~~dg~i~iwd~~~~~~~~~ 625 (1071)
.. +.+....+.......+..+.+.+ +...+++++.|+.|++|++.++.....
T Consensus 310 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~ 389 (902)
T 2oaj_A 310 LGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDK 389 (902)
T ss_dssp EEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECC
T ss_pred CCCCCCCCCCCHHHHHHHHCCCCCEEEEECCCCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCC
T ss_conf 47898755542556546641745227874189995479999778898867787850699991798489997899985565
Q ss_pred E-----ECCCCCCCCCEEEECCCCCEEEEEECCCCEEEEECCCHH--HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 7-----159999982338973899999999589919999968714--666541388322346999997788751233589
Q 001477 626 V-----DADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGV--RLLRMLEGRAMDKNRCPSEPISSKPLTINALGP 698 (1071)
Q Consensus 626 ~-----~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 698 (1071)
. ....+...|+++++++.. ..+|+..... .....+.+|...
T Consensus 390 ~~~~~~~l~~~~~~v~~~~~s~~~-----------~~~w~~~~~~~~~~~~~l~G~~~~--------------------- 437 (902)
T 2oaj_A 390 ASLFPQNLSWLRPLATTSMAASVP-----------NKLWLGALSAAQNKDYLLKGGVRT--------------------- 437 (902)
T ss_dssp GGGSCGGGTTBTTBEEEEEEEEEE-----------HHHHHHHHHTTBCCCCSCCCSBCC---------------------
T ss_pred CCCCCCCCCCCCCCEEEEEEEECC-----------HHHHHHHHHCCCCCCCCCCCCCCC---------------------
T ss_conf 556898522358972489999749-----------999988886046999754578577---------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCEECCCCCCCCCCCEEEE--CC---CCCCC
Q ss_conf 876543358988889999996212556878865334666654445-5762001047888945520665--58---97677
Q 001477 699 ASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAED-VDKIKSWRIPDISDPSQIKALR--LP---DSIAA 772 (1071)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~w~~~~~~~~~~~~~~~--~~---~~~~~ 772 (1071)
.....+++++..+++++ |++|++||+.+.... ....+. +. ...|.
T Consensus 438 ----------------------------v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~-~~~~~~~~l~~~~~~~h~ 488 (902)
T 2oaj_A 438 ----------------------------KRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQ-DNASFEVNLSRTLNKAKE 488 (902)
T ss_dssp ----------------------------CCCCCCCSEEEEEEEEETTSEEEEEESSCCTTT-TTBCEEEEHHHHTTCSSS
T ss_pred ----------------------------CCCCCCCCCCCEEEEECCCCCEEEEECCCCCCC-CCCEEEEECHHHCCCCCC
T ss_conf ----------------------------875333666758999658983899978776456-773677501541377888
Q ss_pred CCEEEEEEECCCCHHHHCCCCCEEEEEECCCCCCCCC-------C-CC------CEEE---CCEECC-----CCCCCCCC
Q ss_conf 8639999704620211113346068875146667999-------9-50------0011---542204-----89987212
Q 001477 773 SKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPS-------G-KA------TANV---APQLWQ-----PPSGTLMT 830 (1071)
Q Consensus 773 ~~v~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~-------g-~~------~~~~---~~~~~~-----~~~~~~~~ 830 (1071)
..|.+++|+|+|+.|++++.||+|++|++....+... . .. .... ...+.. +..+....
T Consensus 489 ~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 568 (902)
T 2oaj_A 489 LAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPS 568 (902)
T ss_dssp CCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEE
T ss_pred CCEEEEEECCCCCEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEE
T ss_conf 76469996389996999945857999992486555754557786651134551346796543224236898877760146
Q ss_pred CCCCCCCCCCCCEEEEEEECCCCEEEEEE-CCEEEEEECCCCEEEEE-----EE-CCCCCEEEEEEC-----CCC---CC
Q ss_conf 34678889878727999703995999981-99199998899719999-----90-899985999982-----899---97
Q 001477 831 NDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTM-----FM-SPPPAATFLAFH-----PQD---NN 895 (1071)
Q Consensus 831 ~~~~~~~h~~~~i~~i~~s~d~~~la~~~-dg~i~iwd~~~~~~~~~-----~~-~~~~~i~~l~~s-----p~~---~~ 895 (1071)
..+.+ | ...|++++||||| +||+|+ |++|++||+.+...+.. +. +|.+.|++++|+ | | ++
T Consensus 569 ~~l~~--h-~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~-Dg~~~~ 643 (902)
T 2oaj_A 569 TAVHA--N-KGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGD-DGYSSI 643 (902)
T ss_dssp EEECC--C-SCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTT-SSSEEE
T ss_pred EEEEC--C-CCCEEEEEECCCC-EEEEEECCCCEEEEECCCCEEEEEEEHHHHCCCCCCCEEEEEEEEEECCC-CCCCCE
T ss_conf 99986--8-8867799964876-89999589769999888983999702467264666613999999984178-987633
Q ss_pred EEEEEECCCEEEEEEC---CCCEEEEEECCCC-----CCEEEEE-EC----------------------CCCCEEEEEEC
Q ss_conf 8999838971999995---6875889842867-----8856999-92----------------------79998999929
Q 001477 896 IIAIGMEDSSVQIYNV---RVDEVKTKLKGHQ-----NRITGLA-FS----------------------PTLNALVSSGA 944 (1071)
Q Consensus 896 ~la~g~~dg~i~iwd~---~~~~~~~~l~~h~-----~~v~~l~-~s----------------------~d~~~l~s~~~ 944 (1071)
+|++|+.|++|++|++ .+++....+.+|. +.|..++ |+ +++.+|++ +
T Consensus 644 ~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~-~- 721 (902)
T 2oaj_A 644 LMVCGTDMGEVITYKILPASGGKFDVQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLIT-G- 721 (902)
T ss_dssp EEEEEETTSEEEEEEEEECGGGCEEEEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEE-C-
T ss_pred EEEEEECCCCEEEEEEECCCCCCEEEEECCCEECCCCCCEEEEEEEECCCCCCCCCCHHHHHCCCCCCCCCEEEEEE-E-
T ss_conf 89999568739999995589986899966724407889647998586687973668878972557788777399999-3-
Q ss_pred CCCEEEEECCCCCEEEEEEECCCCCCCCCCCCCEEE---E------ECCCCCEEEE-EECCEEEEEEC-CCCCEEECCCC
Q ss_conf 993999977877223112310788999998783079---9------9569989999-97991999957-99700102899
Q 001477 945 DAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKV---Q------FHNDQTHLLV-VHESQISVYDS-KLECSRSWSPK 1013 (1071)
Q Consensus 945 d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~------~s~dg~~l~~-~~d~~i~iwd~-~~~~~~~~~~~ 1013 (1071)
+..+++|++.+++..... .++. ..+..+ . |++++..|++ ..+|.|++|++ +++++......
T Consensus 722 ~~~ir~~~~~~~k~~~k~-----~~~~---~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~s~p~l~~~~~~~~~ 793 (902)
T 2oaj_A 722 FDDIRLITLGKSKSTHKG-----FKYP---LAATGLSYISTVEKNNDRKNLTVIITLEINGHLRVFTIPDFKEQMSEHIP 793 (902)
T ss_dssp SSEEEEECTTCCCEEEEE-----CSSC---EEEEEEEEEEEECSSSCEEEEEEEEEEETTSEEEEEETTTCCEEEEEECS
T ss_pred CCCEEEEECCCCCCEEEE-----CCCC---EEEEEEEEEEECCCCCCCCCCEEEEEEECCCCEEEEECCCHHHHHHCCCC
T ss_conf 540599967533512367-----2562---01447778870135554467369999927995999978564778416588
Q ss_pred CC-CCCCEEEEEEECCCCEEEEEE
Q ss_conf 99-999926999911996999980
Q 001477 1014 DA-LPAPISSAIYSCDGLLVYAGF 1036 (1071)
Q Consensus 1014 ~~-h~~~v~~~~~s~dg~~l~t~~ 1036 (1071)
.. ....+...+|+++|..++-.+
T Consensus 794 ~~~~~~~~~~~~~~~~G~~~~~~~ 817 (902)
T 2oaj_A 794 FPIAAKYITESSVLRNGDIAIRVS 817 (902)
T ss_dssp SCCCHHHHTTCEECTTSCEEEECS
T ss_pred CCCCCCCCCCEEECCCCCEEEEEC
T ss_conf 602446432028968988999827
Done!