Query 001479
Match_columns 1071
No_of_seqs 616 out of 2751
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 01:51:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001479.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001479hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1865 Ubiquitin carboxyl-ter 100.0 1.1E-70 2.4E-75 628.4 30.0 323 509-840 87-410 (545)
2 KOG0944 Ubiquitin-specific pro 100.0 2.3E-57 4.9E-62 522.1 19.0 340 472-840 253-762 (763)
3 cd02661 Peptidase_C19E A subfa 100.0 3.2E-55 6.9E-60 484.2 29.6 303 533-838 1-304 (304)
4 cd02663 Peptidase_C19G A subfa 100.0 8.7E-55 1.9E-59 484.9 27.1 279 535-838 1-300 (300)
5 cd02660 Peptidase_C19D A subfa 100.0 2.6E-54 5.6E-59 484.8 29.8 298 534-838 1-328 (328)
6 cd02668 Peptidase_C19L A subfa 100.0 3.4E-54 7.3E-59 485.1 29.1 288 535-838 1-324 (324)
7 cd02664 Peptidase_C19H A subfa 100.0 1.3E-53 2.8E-58 481.5 24.4 274 535-838 1-327 (327)
8 cd02671 Peptidase_C19O A subfa 100.0 3E-53 6.6E-58 479.5 26.7 273 530-838 21-332 (332)
9 cd02657 Peptidase_C19A A subfa 100.0 2.2E-52 4.9E-57 464.9 27.4 283 535-838 1-305 (305)
10 cd02667 Peptidase_C19K A subfa 100.0 9.1E-53 2E-57 464.3 23.8 246 535-838 1-279 (279)
11 cd02658 Peptidase_C19B A subfa 100.0 4.6E-52 1E-56 463.9 27.5 275 535-838 1-311 (311)
12 cd02659 peptidase_C19C A subfa 100.0 2.4E-51 5.1E-56 461.9 27.3 294 532-842 1-334 (334)
13 cd02669 Peptidase_C19M A subfa 100.0 1.8E-49 3.8E-54 464.5 25.7 287 528-838 115-440 (440)
14 COG5560 UBP12 Ubiquitin C-term 100.0 6.9E-48 1.5E-52 440.0 15.7 308 531-841 263-823 (823)
15 cd02662 Peptidase_C19F A subfa 100.0 5.4E-46 1.2E-50 402.4 22.1 210 535-838 1-240 (240)
16 COG5533 UBP5 Ubiquitin C-termi 100.0 6.3E-46 1.4E-50 396.5 21.5 307 529-840 67-414 (415)
17 COG5207 UBP14 Isopeptidase T [ 100.0 1.6E-44 3.4E-49 403.7 19.4 374 426-840 218-749 (749)
18 cd02674 Peptidase_C19R A subfa 100.0 7.7E-44 1.7E-48 379.6 20.6 220 535-838 1-230 (230)
19 COG5077 Ubiquitin carboxyl-ter 100.0 1.8E-44 4E-49 416.8 7.7 348 475-842 129-513 (1089)
20 KOG1866 Ubiquitin carboxyl-ter 100.0 1.5E-43 3.3E-48 409.5 5.7 313 531-859 93-453 (944)
21 KOG1868 Ubiquitin C-terminal h 100.0 2.3E-42 5E-47 411.8 13.8 311 531-844 299-650 (653)
22 PF00443 UCH: Ubiquitin carbox 100.0 1.6E-41 3.4E-46 362.9 18.8 249 533-837 1-269 (269)
23 cd02673 Peptidase_C19Q A subfa 100.0 4.1E-41 8.8E-46 365.8 19.6 238 536-838 2-245 (245)
24 cd02666 Peptidase_C19J A subfa 100.0 2.2E-40 4.7E-45 375.6 19.3 271 533-838 1-343 (343)
25 cd02665 Peptidase_C19I A subfa 100.0 5.9E-40 1.3E-44 352.2 17.2 217 535-838 1-228 (228)
26 cd02257 Peptidase_C19 Peptidas 100.0 4.2E-39 9E-44 338.4 22.0 235 535-838 1-255 (255)
27 KOG1867 Ubiquitin-specific pro 100.0 5.5E-39 1.2E-43 376.6 16.5 307 531-843 159-487 (492)
28 cd02672 Peptidase_C19P A subfa 100.0 1E-36 2.2E-41 335.5 14.3 239 526-838 8-268 (268)
29 KOG1873 Ubiquitin-specific pro 100.0 6.3E-37 1.4E-41 356.2 7.5 306 531-840 203-877 (877)
30 KOG4598 Putative ubiquitin-spe 100.0 1.8E-37 3.9E-42 354.9 1.7 274 531-846 85-447 (1203)
31 KOG1863 Ubiquitin carboxyl-ter 100.0 6.5E-36 1.4E-40 380.2 13.1 351 472-843 110-488 (1093)
32 KOG1870 Ubiquitin C-terminal h 100.0 5.3E-34 1.1E-38 355.0 12.8 306 531-841 244-842 (842)
33 PF13423 UCH_1: Ubiquitin carb 100.0 2.3E-32 5.1E-37 304.3 22.7 277 534-819 1-295 (295)
34 cd02670 Peptidase_C19N A subfa 100.0 1.2E-30 2.5E-35 282.6 15.7 195 535-838 1-241 (241)
35 KOG1864 Ubiquitin-specific pro 100.0 9.2E-31 2E-35 311.9 15.9 309 531-841 230-573 (587)
36 KOG1872 Ubiquitin-specific pro 99.9 2.1E-27 4.5E-32 268.7 7.0 295 531-840 103-469 (473)
37 KOG1871 Ubiquitin-specific pro 99.9 9.2E-26 2E-30 249.7 14.7 303 531-840 26-419 (420)
38 KOG2026 Spindle pole body prot 99.8 2E-20 4.3E-25 206.8 12.7 282 531-840 132-441 (442)
39 KOG1275 PAB-dependent poly(A) 99.8 4.3E-18 9.2E-23 202.7 14.6 302 525-837 491-860 (1118)
40 PF01753 zf-MYND: MYND finger; 98.7 4.6E-09 9.9E-14 82.2 1.1 37 159-196 1-37 (37)
41 PF15499 Peptidase_C98: Ubiqui 98.6 7.4E-08 1.6E-12 103.8 7.4 133 651-818 119-252 (275)
42 KOG1710 MYND Zn-finger and ank 98.3 2.1E-07 4.6E-12 101.2 0.6 42 157-199 320-362 (396)
43 KOG1864 Ubiquitin-specific pro 96.2 0.0098 2.1E-07 73.1 7.5 99 536-634 34-151 (587)
44 KOG3612 PHD Zn-finger protein 95.6 0.0029 6.3E-08 74.8 -0.5 42 157-201 528-569 (588)
45 KOG2061 Uncharacterized MYND Z 95.6 0.0061 1.3E-07 69.7 2.0 55 151-205 131-185 (362)
46 KOG3556 Familial cylindromatos 95.4 0.0093 2E-07 70.0 3.0 95 533-633 368-472 (724)
47 PF08715 Viral_protease: Papai 92.4 0.92 2E-05 52.2 11.0 76 532-631 101-177 (320)
48 KOG1887 Ubiquitin carboxyl-ter 92.2 0.023 4.9E-07 70.5 -2.1 163 651-828 592-772 (806)
49 PF13824 zf-Mss51: Zinc-finger 91.5 0.18 4E-06 43.2 3.1 44 159-203 2-49 (55)
50 PLN03158 methionine aminopepti 90.4 0.2 4.4E-06 59.2 3.3 41 156-197 9-56 (396)
51 PF05408 Peptidase_C28: Foot-a 84.7 0.37 8E-06 50.7 0.8 53 782-846 129-181 (193)
52 PF04438 zf-HIT: HIT zinc fing 79.1 0.87 1.9E-05 34.5 0.8 28 157-185 3-30 (30)
53 KOG3362 Predicted BBOX Zn-fing 76.0 1.4 3E-05 44.7 1.4 33 157-190 119-151 (156)
54 KOG2857 Predicted MYND Zn-fing 56.2 4.3 9.3E-05 41.2 0.4 37 157-199 6-45 (157)
55 PF05408 Peptidase_C28: Foot-a 55.6 47 0.001 35.6 7.8 24 531-554 31-54 (193)
56 KOG4317 Predicted Zn-finger pr 52.1 5 0.00011 45.5 0.2 35 157-197 8-43 (383)
57 PF09889 DUF2116: Uncharacteri 45.9 14 0.00031 32.4 2.0 32 156-194 3-34 (59)
58 PRK01343 zinc-binding protein; 36.9 30 0.00065 30.3 2.5 27 157-188 10-36 (57)
59 PF10013 DUF2256: Uncharacteri 33.4 14 0.00031 30.2 0.0 29 157-185 9-40 (42)
60 COG3478 Predicted nucleic-acid 31.3 37 0.00081 30.3 2.2 35 713-747 3-39 (68)
61 PLN03144 Carbon catabolite rep 26.9 39 0.00085 42.5 2.3 38 158-196 61-109 (606)
62 PF14353 CpXC: CpXC protein 23.9 69 0.0015 31.8 3.0 48 667-725 2-49 (128)
63 KOG2858 Uncharacterized conser 22.7 31 0.00067 40.1 0.3 31 157-188 18-49 (390)
64 KOG2738 Putative methionine am 20.2 46 0.00099 38.1 1.0 40 157-197 7-53 (369)
65 PRK03824 hypA hydrogenase nick 20.1 3.6E+02 0.0077 27.5 7.3 15 663-677 67-81 (135)
No 1
>KOG1865 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-70 Score=628.40 Aligned_cols=323 Identities=49% Similarity=0.892 Sum_probs=307.1
Q ss_pred CceeeccchhhhhhhcccccCCcCCcccccCCCcccHHHHHHHHHcCHHHHHHHHhcccCcccCCCchhHHHHHHHHHHH
Q 001479 509 KLKMLFPYEEFLKLFQYEVIDLLSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMM 588 (1071)
Q Consensus 509 ~~~~~f~~E~~~~l~~~~~~~~~gp~GL~NlGNTCYmNSVLQ~L~sip~Fr~~Ll~~~~~~~~~~~~~~ll~qL~kLf~~ 588 (1071)
..+.+|++|.+. +.++++. ..+.||.|+|||||+|||||||.++|+|.+||+...|...|....+|++|+|+.++..
T Consensus 87 p~k~Lfp~e~~~--~~~~~~~-~~~~GL~NlGNtCfaNsvlQcLt~T~PLv~yLls~~hs~~C~~~~~C~lc~~q~hi~~ 163 (545)
T KOG1865|consen 87 PAKVLFPYEKLP--LSSDRPA-AVGAGLQNLGNTCFANSVLQCLTYTPPLVNYLLSREHSRSCHRAKFCMLCTFQAHITR 163 (545)
T ss_pred cchhccccceec--ccccccc-cCCcceecCCccHHHHHHHHHhcccHHHHHHHHHhhhhhhccccCeeeehHHHHHHHH
Confidence 347899999988 4445555 6789999999999999999999999999999999999999999999999999999987
Q ss_pred HHhCC-CCCChHHHHHHHHhcccccCCCCcCcHHHHHHHHHHHHHHHHhhhcCCCCCCCCccccccccccccceEEEeEE
Q 001479 589 LRESA-GPLSPGRILSHMRSISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKV 667 (1071)
Q Consensus 589 L~ss~-~~isP~~fl~~L~k~~~~F~~g~QQDA~EFL~~LLd~Le~e~~~~~~~e~k~~~~~~~~siI~~lF~g~l~s~i 667 (1071)
..... .+|+|..|+..|+.+..+|..|+|+||||||+++||.|++.|+ ++....++..+++++|+++|+|.+++++
T Consensus 164 A~~~~g~pisP~~i~s~L~~I~~~f~~grQEDAHEFLr~~vd~mqk~cL---~g~~~~~~~sq~ttlv~~iFGG~LrS~v 240 (545)
T KOG1865|consen 164 ALHNPGHPISPSQILSNLRNISAHFGRGRQEDAHEFLRFTVDAMQKACL---PGHKQVDPRSQDTTLVHQIFGGYLRSQI 240 (545)
T ss_pred HhcCCCCccChHHHHHhhhhhcccccCCchhhHHHHHHHHHHHHHHhhc---CCCccCCcccccceehhhhhccchhhce
Confidence 66555 4999999999999999999999999999999999999999987 5677889999999999999999999999
Q ss_pred EecCCCCCccccccceeeEEeeecccccHHHHHHhcCCCCcCCCCCccccccccccceeeEEEEEeecCceEEEEEeeec
Q 001479 668 KCLRCSHESERYENIMDLTLEIYGWVESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQ 747 (1071)
Q Consensus 668 kC~~Cg~~S~~~E~f~~LsL~I~~~~~sLee~L~~f~~~E~LdGdnky~C~~Ck~k~~A~K~~~I~klP~ILiIqLkRF~ 747 (1071)
+|..|.+++.++|+.++|+|+|. ++.+|++||++|+++|.|+|+|+|+|++|+++++|.|+++|.++|+||+||||||+
T Consensus 241 kC~~C~~vS~tyE~~~dltvei~-d~~sl~~AL~qFt~~E~L~gen~Y~C~~Ck~~v~A~K~lti~raPnVLTi~LKRF~ 319 (545)
T KOG1865|consen 241 KCLHCKGVSDTYEPYLDLTLEIQ-DASSLQQALEQFTKPEKLDGENAYHCGRCKQKVPASKQLTIHRAPNVLTLHLKRFS 319 (545)
T ss_pred ecccCCCcccccccccceEEEec-cchhHHHHHHHhhhHHhhCCccccccchhhhhCcccceeeeecCCceEEEeeehhc
Confidence 99999999999999999999999 68999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccceEecCccCCCCCccCCCCCCCCceeEEEEEEEecCCCCCCCceEEEEEECCCCCEEEEcCCeeeeecCCcc
Q 001479 748 EGRYGKINKCITFPEMLDMMPFMTGTGDTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDMQGTWFRIDDTQVHPVPMSQV 827 (1071)
Q Consensus 748 ~~~~~KI~~~V~FPe~LDL~~y~~~~~~~~~~YeL~gVIvH~G~~~S~~sGHYvayVK~~dg~Wy~FNDs~Vt~vs~eeV 827 (1071)
.+..+||++.|.||+.|||.|||+++.+.+..|.|+|||+|.|. +.++|||+||||..+|+||+|||+.|+.++++.|
T Consensus 320 ~~~~gKI~K~I~fPE~LDl~PyMS~~~e~s~~Y~LYavlVH~g~--~~~~GHY~cYvks~~g~Wy~~DDS~V~~~~~~~V 397 (545)
T KOG1865|consen 320 NGTGGKISKPVSFPETLDLQPYMSQPNEGSTVYKLYAVLVHLGT--SCHSGHYFCYVKSQNGQWYKMDDSEVTQSSIESV 397 (545)
T ss_pred cCcccccccccCCcccccccccccCCCCCCceEEEEEEEEeccc--cccCCceEEEEEcCCCceEEccCceeeeccccce
Confidence 99999999999999999999999988889999999999999998 7999999999999999999999999999999999
Q ss_pred cCCccEEEEEEEc
Q 001479 828 MSEGAYMLFYMRS 840 (1071)
Q Consensus 828 ls~~AYILfY~R~ 840 (1071)
+++.||||||.|.
T Consensus 398 Lsq~AYmLfY~R~ 410 (545)
T KOG1865|consen 398 LSQQAYILFYARK 410 (545)
T ss_pred ecccceEEEEEee
Confidence 9999999999998
No 2
>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-57 Score=522.11 Aligned_cols=340 Identities=24% Similarity=0.334 Sum_probs=301.6
Q ss_pred CCCCCcccccccccccCcccccccccchhhhhHhhhcCceeeccchhhhhhhcccccCCcCCcccccCCCcccHHHHHHH
Q 001479 472 AQGSNVVSKMGIMKMMGLRKSTKLRQDSSELWHDQHRKLKMLFPYEEFLKLFQYEVIDLLSPRGLLNCGNSCYANAVLQC 551 (1071)
Q Consensus 472 ~~g~~hLshfGI~k~~nl~~~~Kteks~~EL~~d~n~~~~~~f~~E~~~~l~~~~~~~~~gp~GL~NlGNTCYmNSVLQ~ 551 (1071)
+....||+|||| |+.+|.||+|+++||++++|+.++|.+..|...++. +.+| +|++||.|+||+||||||||+
T Consensus 253 Pnl~~hl~hfGI----d~~~m~kteksl~elel~~N~i~Ew~~~~esg~~l~--p~~g-pgytGl~NlGNSCYlnSVmQ~ 325 (763)
T KOG0944|consen 253 PNLESHLSHFGI----DMAKMDKTEKSLVELELDQNRIWEWEALEESGAPLE--PLFG-PGYTGLINLGNSCYLNSVMQS 325 (763)
T ss_pred ccHHHHHHhcCc----cHHHhccchhHHHHHHHHhhcccCceeeccCCCccc--cccC-CCccceeecCcchhHHHHHHH
Confidence 356889999999 999999999999999999999999999999887776 3778 999999999999999999999
Q ss_pred HHcCHHHHHHHHhc--ccCcccCCCchhHHHHHHHHHHHHHhC-----------CCCCChHHHHHHHHhcccccCCCCcC
Q 001479 552 LTCTKPLVIYLLRR--SHSSACCGKDWCLMCELEQHVMMLRES-----------AGPLSPGRILSHMRSISCQIGDGSQE 618 (1071)
Q Consensus 552 L~sip~Fr~~Ll~~--~~~~~~~~~~~~ll~qL~kLf~~L~ss-----------~~~isP~~fl~~L~k~~~~F~~g~QQ 618 (1071)
|+.+|.|...++.. .+...+..+..+|.|||.+|.+.|.+. +..|+|.+|+..+++.++.|++.+||
T Consensus 326 Lf~i~~fq~~~~~~~~~f~~~~~~P~ndf~cQ~~Kl~~gm~sgkys~p~~~~~~qngIsP~mFK~~igknHpeFst~~QQ 405 (763)
T KOG0944|consen 326 LFSIPSFQRRYLEQERIFNCYPKDPTNDFNCQLAKLLHGMLSGKYSKPLMDPSNQNGISPLMFKALIGKNHPEFSTNRQQ 405 (763)
T ss_pred heecccHHHhhccccceeecCCCCcchhHHHHHHHHHHHhhcCcccCccCCccccCCcCHHHHHHHHcCCCccccchhhh
Confidence 99999999888765 334455678899999999999999752 36899999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHhhhcCCCCCCCCccccccccccccceEEEeEEEecCCCCCccccccceeeEEeeec-----cc
Q 001479 619 DAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEIYG-----WV 693 (1071)
Q Consensus 619 DA~EFL~~LLd~Le~e~~~~~~~e~k~~~~~~~~siI~~lF~g~l~s~ikC~~Cg~~S~~~E~f~~LsL~I~~-----~~ 693 (1071)
||+|||.+||+.|.+..... ...+.++|.+.++.+++|..|++++++++..+.|.|+|+. ..
T Consensus 406 DA~EFllfLl~ki~~n~rs~-------------~~nptd~frF~ve~Rv~C~~c~kVrYs~~~~~~i~lpv~~~~~v~~~ 472 (763)
T KOG0944|consen 406 DAQEFLLFLLEKIRENSRSS-------------LPNPTDLFRFEVEDRVSCLGCRKVRYSYESEYLIQLPVPMTNEVREK 472 (763)
T ss_pred hHHHHHHHHHHHHhhccccc-------------CCCHHHHHHhhhhhhhhhhccccccccchhheeeEeecccccccccc
Confidence 99999999999998632111 1347799999999999999999999999999999999984 24
Q ss_pred ccHHHHHHhcCCCCcCCCCCccccccccccceeeEEEEEeecCceEEEEEeeeccccc--ccccceEecCccCCCCCccC
Q 001479 694 ESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQEGRY--GKINKCITFPEMLDMMPFMT 771 (1071)
Q Consensus 694 ~sLee~L~~f~~~E~LdGdnky~C~~Ck~k~~A~K~~~I~klP~ILiIqLkRF~~~~~--~KI~~~V~FPe~LDL~~y~~ 771 (1071)
.++.+||+.|+.+.+.+ |+|..|+.+..|+|+.+|++||+||+||+.||.+..| +|++..|++|+.|||+.|++
T Consensus 473 v~~~~cleaff~pq~~d----f~s~ac~~K~~a~kt~~~ksfP~yLiiqv~rf~~~dw~pkKld~~iempe~ldls~~rs 548 (763)
T KOG0944|consen 473 VPISACLEAFFEPQVDD----FWSTACGEKKGATKTTRFKSFPDYLIIQVGRFTLQDWVPKKLDVSIEMPEELDLSSYRS 548 (763)
T ss_pred CCHHHHHHHhcCCcchh----hhhHhhcCccccccccccccCCceEEEEeeEEEecCceeeeeccceecchhhchhhhhh
Confidence 59999999999994444 9999999999999999999999999999999987665 79999999999999987755
Q ss_pred CCC-----------------------------------------------------------------------------
Q 001479 772 GTG----------------------------------------------------------------------------- 774 (1071)
Q Consensus 772 ~~~----------------------------------------------------------------------------- 774 (1071)
.+.
T Consensus 549 ~g~~p~ee~lpde~~~~~~~~~d~s~i~qL~~MGFp~eac~rAly~tgN~~aEaA~NWl~~HMdDpd~~~p~vvp~~~~~ 628 (763)
T KOG0944|consen 549 KGLQPGEEALPDEAPETSEFAADRSVISQLVEMGFPEEACRRALYYTGNSGAEAASNWLMEHMDDPDIDDPFVVPGNSPK 628 (763)
T ss_pred cCCCCcccccCCcCcccCccchhHHHHHHHHHcCCCHHHHHHHHhhhcCccHHHHHHHHHHhccCcccCCceecCCCCCc
Confidence 320
Q ss_pred -------------------------------------------------------------------------CCCCcee
Q 001479 775 -------------------------------------------------------------------------DTPPLYM 781 (1071)
Q Consensus 775 -------------------------------------------------------------------------~~~~~Ye 781 (1071)
+++.+|.
T Consensus 629 a~~~~~~e~~v~si~smGf~~~qa~~aL~~~n~nveravDWif~h~d~~~ed~~~~~s~~~~~~~~~~~~~~~dg~~~Y~ 708 (763)
T KOG0944|consen 629 ADAREVDEESVASIVSMGFSRNQAIKALKATNNNVERAVDWIFSHMDIPVEDAAEGESSSAIESESTPSGTGKDGPGKYA 708 (763)
T ss_pred cccCCCChhHheeeeeecCcHHHHHHHHHhcCccHHHHHHHHHhcccccccccCcCCCCCcchhhcCCcccCCCCCccee
Confidence 1567999
Q ss_pred EEEEEEEecCCCCCCCceEEEEEECCCCCEEEEcCCeeeeecCCcccCCccEEEEEEEc
Q 001479 782 LYSVVVHLDTQNASFSGHYVSYIKDMQGTWFRIDDTQVHPVPMSQVMSEGAYMLFYMRS 840 (1071)
Q Consensus 782 L~gVIvH~G~~~S~~sGHYvayVK~~dg~Wy~FNDs~Vt~vs~eeVls~~AYILfY~R~ 840 (1071)
|+|||+|+|+ ++++||||||||+ .|+|++|||++|... ++..+..+|||||+|.
T Consensus 709 L~a~IsHmGt--s~~sGHYV~hirK-egkWVlfNDeKv~~S--~~ppK~lgYvY~y~R~ 762 (763)
T KOG0944|consen 709 LFAFISHMGT--SAHSGHYVCHIRK-EGKWVLFNDEKVAAS--QEPPKDLGYVYLYTRI 762 (763)
T ss_pred EEEEEecCCC--CCCCcceEEEEee-cCcEEEEcchhhhhc--cCChhhcceEEEEEec
Confidence 9999999999 9999999999999 799999999999944 6677889999999996
No 3
>cd02661 Peptidase_C19E A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=3.2e-55 Score=484.25 Aligned_cols=303 Identities=52% Similarity=0.903 Sum_probs=271.3
Q ss_pred CcccccCCCcccHHHHHHHHHcCHHHHHHHHhcccCcccCCCchhHHHHHHHHHHHHH-hCCCCCChHHHHHHHHhcccc
Q 001479 533 PRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLR-ESAGPLSPGRILSHMRSISCQ 611 (1071)
Q Consensus 533 p~GL~NlGNTCYmNSVLQ~L~sip~Fr~~Ll~~~~~~~~~~~~~~ll~qL~kLf~~L~-ss~~~isP~~fl~~L~k~~~~ 611 (1071)
|+||.|+|||||||||||+|+++|+|+++++...+...+.....+++++|+.++.++. +....+.|..|...+....+.
T Consensus 1 ~~GL~N~gntCY~NsvLQ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~l~~~~~~ 80 (304)
T cd02661 1 GAGLQNLGNTCFLNSVLQCLTHTPPLANYLLSREHSKDCCNEGFCMMCALEAHVERALASSGPGSAPRIFSSNLKQISKH 80 (304)
T ss_pred CCCccccCchhHHHHHHHHhhCCHHHHHHHhcchhhhhccCCcchHHHHHHHHHHHHHhCCCCccChHHHHHHHHHHHHh
Confidence 6899999999999999999999999999998765555555667899999999998876 566789999999999999999
Q ss_pred cCCCCcCcHHHHHHHHHHHHHHHHhhhcCCCCCCCCccccccccccccceEEEeEEEecCCCCCccccccceeeEEeeec
Q 001479 612 IGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEIYG 691 (1071)
Q Consensus 612 F~~g~QQDA~EFL~~LLd~Le~e~~~~~~~e~k~~~~~~~~siI~~lF~g~l~s~ikC~~Cg~~S~~~E~f~~LsL~I~~ 691 (1071)
|..+.||||+|||.+||+.|++++.................++|.++|+|++.+.++|..|+..+.+.+.|+.|+|++++
T Consensus 81 f~~~~qqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~e~~~~l~l~i~~ 160 (304)
T cd02661 81 FRIGRQEDAHEFLRYLLDAMQKACLDRFKKLKAVDPSSQETTLVQQIFGGYLRSQVKCLNCKHVSNTYDPFLDLSLDIKG 160 (304)
T ss_pred hcCcchhhHHHHHHHHHHHHHHHHhhhcccccccCccccCCChhhhcCCcEEeeeEEeCCCCCCcCccccceeeeeecCC
Confidence 99999999999999999999987655432211111223456789999999999999999999999999999999999997
Q ss_pred ccccHHHHHHhcCCCCcCCCCCccccccccccceeeEEEEEeecCceEEEEEeeecccccccccceEecCccCCCCCccC
Q 001479 692 WVESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQEGRYGKINKCITFPEMLDMMPFMT 771 (1071)
Q Consensus 692 ~~~sLee~L~~f~~~E~LdGdnky~C~~Ck~k~~A~K~~~I~klP~ILiIqLkRF~~~~~~KI~~~V~FPe~LDL~~y~~ 771 (1071)
..+|+++|+.|+.+|.++++++|.|++|++++.+.++..|.++|++|+|||+||......|++..|.||+.|||.+++.
T Consensus 161 -~~~l~~~l~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~~P~iL~i~l~Rf~~~~~~Ki~~~v~f~~~L~l~~~~~ 239 (304)
T cd02661 161 -ADSLEDALEQFTKPEQLDGENKYKCERCKKKVKASKQLTIHRAPNVLTIHLKRFSNFRGGKINKQISFPETLDLSPYMS 239 (304)
T ss_pred -CCcHHHHHHHhcCceeeCCCCCeeCCCCCCccceEEEEEEecCCcEEEEEEeccccCCccccCCeEecCCeechhhccc
Confidence 4799999999999999999999999999999999999999999999999999998775679999999999999999998
Q ss_pred CCCCCCCceeEEEEEEEecCCCCCCCceEEEEEECCCCCEEEEcCCeeeeecCCcccCCccEEEEEE
Q 001479 772 GTGDTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDMQGTWFRIDDTQVHPVPMSQVMSEGAYMLFYM 838 (1071)
Q Consensus 772 ~~~~~~~~YeL~gVIvH~G~~~S~~sGHYvayVK~~dg~Wy~FNDs~Vt~vs~eeVls~~AYILfY~ 838 (1071)
.+......|+|+|||+|.|. ++++|||+||+|..+++||+|||+.|+++++++|..+.||||||.
T Consensus 240 ~~~~~~~~Y~L~~vi~H~G~--~~~~GHY~~~~~~~~~~W~~~nD~~V~~v~~~~v~~~~aYil~Y~ 304 (304)
T cd02661 240 QPNDGPLKYKLYAVLVHSGF--SPHSGHYYCYVKSSNGKWYNMDDSKVSPVSIETVLSQKAYILFYI 304 (304)
T ss_pred cCCCCCceeeEEEEEEECCC--CCCCcCCEEEEECCCCCEEEEeCCeeEECCHHHhcCCCcEEEEeC
Confidence 76677899999999999997 557999999999888999999999999999999999999999994
No 4
>cd02663 Peptidase_C19G A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=8.7e-55 Score=484.92 Aligned_cols=279 Identities=32% Similarity=0.558 Sum_probs=246.5
Q ss_pred ccccCCCcccHHHHHHHHHcCHHHHHHHHhcccCcccCCCchhHHHHHHHHHHHHHhCC---CCCChHHHHHHHHhcccc
Q 001479 535 GLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESA---GPLSPGRILSHMRSISCQ 611 (1071)
Q Consensus 535 GL~NlGNTCYmNSVLQ~L~sip~Fr~~Ll~~~~~~~~~~~~~~ll~qL~kLf~~L~ss~---~~isP~~fl~~L~k~~~~ 611 (1071)
||.|+|||||||||||+|++ .+++++|+.||..|+... ..++|..|+.+++...+.
T Consensus 1 Gl~NlGnTCY~NsvLQ~L~~---------------------~~l~~~L~~lf~~l~~~~~~~~~isP~~f~~~l~~~~~~ 59 (300)
T cd02663 1 GLENFGNTCYCNSVLQALYF---------------------ENLLTCLKDLFESISEQKKRTGVISPKKFITRLKRENEL 59 (300)
T ss_pred CccCCCcceehhHHHHHhhh---------------------HHHHHHHHHHHHHHHhCCCCCeeECHHHHHHHHHhhcCC
Confidence 89999999999999999987 468899999999998643 458999999999999999
Q ss_pred cCCCCcCcHHHHHHHHHHHHHHHHhhhcCCCCC------CCCccccccccccccceEEEeEEEecCCCCCccccccceee
Q 001479 612 IGDGSQEDAHEFLRLLVASMQSICLERHGGESK------VDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDL 685 (1071)
Q Consensus 612 F~~g~QQDA~EFL~~LLd~Le~e~~~~~~~e~k------~~~~~~~~siI~~lF~g~l~s~ikC~~Cg~~S~~~E~f~~L 685 (1071)
|..++||||+|||.+|||.|++++......... ........++|.++|+|++.+.++|..|++.+.+.|+|++|
T Consensus 60 f~~~~QqDA~EFl~~lLd~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~F~G~~~~~~~C~~C~~~s~~~e~f~~L 139 (300)
T cd02663 60 FDNYMHQDAHEFLNFLLNEIAEILDAERKAEKANRKLNNNNNAEPQPTWVHEIFQGILTNETRCLTCETVSSRDETFLDL 139 (300)
T ss_pred CCCCccccHHHHHHHHHHHHHHHHHHHhhcccccccccccccCCcCCCChhhhCceEEEeeEEeCCCCCCccccceeEEe
Confidence 999999999999999999999987543211100 01112346789999999999999999999999999999999
Q ss_pred EEeeecccccHHHHHHhcCCCCcCCCCCccccccccccceeeEEEEEeecCceEEEEEeeeccc----ccccccceEecC
Q 001479 686 TLEIYGWVESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQEG----RYGKINKCITFP 761 (1071)
Q Consensus 686 sL~I~~~~~sLee~L~~f~~~E~LdGdnky~C~~Ck~k~~A~K~~~I~klP~ILiIqLkRF~~~----~~~KI~~~V~FP 761 (1071)
+|+|+. ..+|++||+.|+.+|.++|+++|+|++|++++.++|+..|.++|+||+|||+||.+. ...|++..|.||
T Consensus 140 sl~i~~-~~sl~~~L~~~~~~E~l~~~~~~~C~~C~~~~~a~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fp 218 (300)
T cd02663 140 SIDVEQ-NTSITSCLRQFSATETLCGRNKFYCDECCSLQEAEKRMKIKKLPKILALHLKRFKYDEQLNRYIKLFYRVVFP 218 (300)
T ss_pred ccCCCC-cCCHHHHHHHhhcccccCCCCcEECCCCCCceeEEEEEEeccCCceeEEEEEeEEeecccCCceecCceEecC
Confidence 999997 689999999999999999999999999999999999999999999999999999754 246999999999
Q ss_pred ccCCCCCccCCCCCCCCceeEEEEEEEecCCCCCCCceEEEEEECCCCCEEEEcCCeeeeecCCccc--------CCccE
Q 001479 762 EMLDMMPFMTGTGDTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDMQGTWFRIDDTQVHPVPMSQVM--------SEGAY 833 (1071)
Q Consensus 762 e~LDL~~y~~~~~~~~~~YeL~gVIvH~G~~~S~~sGHYvayVK~~dg~Wy~FNDs~Vt~vs~eeVl--------s~~AY 833 (1071)
..|||..+..........|+|+|||+|.|. ++++|||+||+|. +++||+|||+.|++++.++|. ...||
T Consensus 219 ~~L~~~~~~~~~~~~~~~Y~L~~vi~H~G~--~~~~GHY~a~~k~-~~~W~~fdD~~V~~~~~~~v~~~~~~~~~~~~aY 295 (300)
T cd02663 219 LELRLFNTTDDAENPDRLYELVAVVVHIGG--GPNHGHYVSIVKS-HGGWLLFDDETVEKIDENAVEEFFGDSPNQATAY 295 (300)
T ss_pred cEEeccccccccCCCCeEEEEEEEEEEecC--CCCCCceEEEEEC-CCcEEEEcCCceEEcCHHHHHHhcCCCCCCCceE
Confidence 999998876554555689999999999997 5679999999999 999999999999999988875 47799
Q ss_pred EEEEE
Q 001479 834 MLFYM 838 (1071)
Q Consensus 834 ILfY~ 838 (1071)
||||+
T Consensus 296 iLfY~ 300 (300)
T cd02663 296 VLFYQ 300 (300)
T ss_pred EEEeC
Confidence 99995
No 5
>cd02660 Peptidase_C19D A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.6e-54 Score=484.75 Aligned_cols=298 Identities=34% Similarity=0.598 Sum_probs=261.0
Q ss_pred cccccCCCcccHHHHHHHHHcCHHHHHHHHhcccCc--ccCCCchhHHHHHHHHHHHHHhC--CCCCChHHHHHHHHhcc
Q 001479 534 RGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSS--ACCGKDWCLMCELEQHVMMLRES--AGPLSPGRILSHMRSIS 609 (1071)
Q Consensus 534 ~GL~NlGNTCYmNSVLQ~L~sip~Fr~~Ll~~~~~~--~~~~~~~~ll~qL~kLf~~L~ss--~~~isP~~fl~~L~k~~ 609 (1071)
+||.|+|||||||||||+|+++|+|+++++...+.. ....+..++.++|++||..|+.. ...+.|..|+..++...
T Consensus 1 rGl~N~gntCY~NsvLQ~L~~~~~f~~~ll~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~l~~~~~~~ 80 (328)
T cd02660 1 RGLINLGATCFMNVILQALLHNPLLRNYFLSDRHSCTCLSCSPNSCLSCAMDEIFQEFYYSGDRSPYGPINLLYLSWKHS 80 (328)
T ss_pred CCccccCcchHHHHHHHHHhcCHHHHHHHhcCccccccccCCccccHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHhhc
Confidence 599999999999999999999999999999875543 22345789999999999999533 45789999999999888
Q ss_pred cccCCCCcCcHHHHHHHHHHHHHHHHhhhcCCCCCCCCccccccccccccceEEEeEEEecCCCCCccccccceeeEEee
Q 001479 610 CQIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEI 689 (1071)
Q Consensus 610 ~~F~~g~QQDA~EFL~~LLd~Le~e~~~~~~~e~k~~~~~~~~siI~~lF~g~l~s~ikC~~Cg~~S~~~E~f~~LsL~I 689 (1071)
+.|..+.||||+|||.+||+.|++++...... ........++|.++|+|.+...++|..|++.+.+.++|+.|+|++
T Consensus 81 ~~f~~~~QqDa~Efl~~ll~~l~~~~~~~~~~---~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~lsl~i 157 (328)
T cd02660 81 RNLAGYSQQDAHEFFQFLLDQLHTHYGGDKNE---ANDESHCNCIIHQTFSGSLQSSVTCQRCGGVSTTVDPFLDLSLDI 157 (328)
T ss_pred hhhcccccccHHHHHHHHHHHHHHHhhccccc---ccccccCCceeEEecccEEEeeeEcCCCCCccceecccceeeeec
Confidence 89999999999999999999999886543221 011123357899999999999999999999999999999999999
Q ss_pred ecc--------------cccHHHHHHhcCCCCcCCCCCccccccccccceeeEEEEEeecCceEEEEEeeecccc---cc
Q 001479 690 YGW--------------VESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQEGR---YG 752 (1071)
Q Consensus 690 ~~~--------------~~sLee~L~~f~~~E~LdGdnky~C~~Ck~k~~A~K~~~I~klP~ILiIqLkRF~~~~---~~ 752 (1071)
+.. ..+|++||+.|+.+|.+++.+ |+|++|+.++.+.++..|.++|++|+|||+||.... ..
T Consensus 158 ~~~~~~~~~~~~~~~~~~~sl~~~L~~~~~~e~~~~~~-~~C~~C~~~~~~~~~~~i~~lP~~Lii~lkRf~~~~~~~~~ 236 (328)
T cd02660 158 PNKSTPSWALGESGVSGTPTLSDCLDRFTRPEKLGDFA-YKCSGCGSTQEATKQLSIKKLPPVLCFQLKRFEHSLNKTSR 236 (328)
T ss_pred cccccccccccccCCCCCCCHHHHHHHhcCccccCCCC-ccCCCCCCccceEEEEEecCCCceeEEEEEeEEecCCCCCc
Confidence 864 279999999999999999877 999999999999999999999999999999998654 37
Q ss_pred cccceEecCccCCCCCccCC---------CCCCCCceeEEEEEEEecCCCCCCCceEEEEEECCCCCEEEEcCCeeeeec
Q 001479 753 KINKCITFPEMLDMMPFMTG---------TGDTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDMQGTWFRIDDTQVHPVP 823 (1071)
Q Consensus 753 KI~~~V~FPe~LDL~~y~~~---------~~~~~~~YeL~gVIvH~G~~~S~~sGHYvayVK~~dg~Wy~FNDs~Vt~vs 823 (1071)
|++..|.||.+|||.+|+.. .......|+|+|||+|.|+ ..+|||+||+|..+++||+|||+.|++++
T Consensus 237 K~~~~v~fp~~Ldl~~~~~~~~~~~~~~~~~~~~~~Y~L~avi~H~G~---~~~GHY~~~~~~~~~~W~~~nD~~V~~~~ 313 (328)
T cd02660 237 KIDTYVQFPLELNMTPYTSSSIGDTQDSNSLDPDYTYDLFAVVVHKGT---LDTGHYTAYCRQGDGQWFKFDDAMITRVS 313 (328)
T ss_pred CCCcEEeCCCEechhhhcccccccccccccCCCCceEEEEEEEEeecc---CCCCcEEEEEECCCCcEEEEECCeeEECC
Confidence 99999999999999999874 2345689999999999996 34899999999966999999999999999
Q ss_pred CCcccCCccEEEEEE
Q 001479 824 MSQVMSEGAYMLFYM 838 (1071)
Q Consensus 824 ~eeVls~~AYILfY~ 838 (1071)
+++|....||||||.
T Consensus 314 ~~~v~~~~ayil~Y~ 328 (328)
T cd02660 314 EEEVLKSQAYLLFYH 328 (328)
T ss_pred HHHhcCCCcEEEEeC
Confidence 999999999999994
No 6
>cd02668 Peptidase_C19L A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=3.4e-54 Score=485.10 Aligned_cols=288 Identities=26% Similarity=0.502 Sum_probs=250.5
Q ss_pred ccccCCCcccHHHHHHHHHcCHHHHHHHHhcccCccc---------CCCchhHHHHHHHHHHHHHhC-CCCCChHHHHHH
Q 001479 535 GLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSAC---------CGKDWCLMCELEQHVMMLRES-AGPLSPGRILSH 604 (1071)
Q Consensus 535 GL~NlGNTCYmNSVLQ~L~sip~Fr~~Ll~~~~~~~~---------~~~~~~ll~qL~kLf~~L~ss-~~~isP~~fl~~ 604 (1071)
||.|+||||||||+||+|+++|+|+++++........ .....+++++|++||.+|+.+ ...++|..|+..
T Consensus 1 GL~NlGnTCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lf~~l~~~~~~~i~p~~f~~~ 80 (324)
T cd02668 1 GLKNLGATCYVNSFLQLWFMNLEFRKAVYECNSTEDAELKNMPPDKPHEPQTIIDQLQLIFAQLQFGNRSVVDPSGFVKA 80 (324)
T ss_pred CcccCCceeHHHHHHHHHHCCHHHHHHHHccCcccccccccccccCCcccchHHHHHHHHHHHHHhCCCceEChHHHHHH
Confidence 8999999999999999999999999999875433210 012368999999999999854 457999999988
Q ss_pred HHhcccccCCCCcCcHHHHHHHHHHHHHHHHhhhcCCCCCCCCccccccccccccceEEEeEEEecCCCCCcccccccee
Q 001479 605 MRSISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMD 684 (1071)
Q Consensus 605 L~k~~~~F~~g~QQDA~EFL~~LLd~Le~e~~~~~~~e~k~~~~~~~~siI~~lF~g~l~s~ikC~~Cg~~S~~~E~f~~ 684 (1071)
+ .|..++||||+|||.+||+.|++++.... .....++|.++|.|++...++|..|+..+.+.|+|+.
T Consensus 81 l-----~~~~~~QqDa~EFl~~lLd~L~~~l~~~~--------~~~~~~~i~~~F~G~~~~~~~C~~C~~~s~~~e~f~~ 147 (324)
T cd02668 81 L-----GLDTGQQQDAQEFSKLFLSLLEAKLSKSK--------NPDLKNIVQDLFRGEYSYVTQCSKCGRESSLPSKFYE 147 (324)
T ss_pred h-----CCCCccccCHHHHHHHHHHHHHHHHhhcc--------CCcccchhhhhcceEEEEEEEeCCCCCccccccccEE
Confidence 8 36788999999999999999998764321 0123468999999999999999999999999999999
Q ss_pred eEEeeecccccHHHHHHhcCCCCcCCCCCccccccccccceeeEEEEEeecCceEEEEEeeeccc----ccccccceEec
Q 001479 685 LTLEIYGWVESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQEG----RYGKINKCITF 760 (1071)
Q Consensus 685 LsL~I~~~~~sLee~L~~f~~~E~LdGdnky~C~~Ck~k~~A~K~~~I~klP~ILiIqLkRF~~~----~~~KI~~~V~F 760 (1071)
|+|+|++ ..+|+++|+.|+.+|.++|+++|.|++|++++.+.|+..|.++|+||+|||+||.++ ...|++..|.|
T Consensus 148 l~l~i~~-~~sl~~~L~~~~~~e~l~g~~~~~C~~C~~~~~a~k~~~i~~lP~iLii~LkRf~~d~~~~~~~Ki~~~v~f 226 (324)
T cd02668 148 LELQLKG-HKTLEECIDEFLKEEQLTGDNQYFCESCNSKTDATRRIRLTTLPPTLNFQLLRFVFDRKTGAKKKLNASISF 226 (324)
T ss_pred EEEEecc-cCCHHHHHHHhhCceecCCCccccCCCCCceeeeEEEEEecCCCCeEEEEEEcceeecccCcceeCCcEEEC
Confidence 9999986 579999999999999999999999999999999999999999999999999999754 34799999999
Q ss_pred CccCCCCCccCCCCCCCCceeEEEEEEEecCCCCCCCceEEEEEECC-CCCEEEEcCCeeeeecCCcc------------
Q 001479 761 PEMLDMMPFMTGTGDTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDM-QGTWFRIDDTQVHPVPMSQV------------ 827 (1071)
Q Consensus 761 Pe~LDL~~y~~~~~~~~~~YeL~gVIvH~G~~~S~~sGHYvayVK~~-dg~Wy~FNDs~Vt~vs~eeV------------ 827 (1071)
|+.|||.+|+.........|+|+|||+|.|. ++++|||+||+|.. +++||+|||+.|++++.+.+
T Consensus 227 p~~Ldl~~~~~~~~~~~~~Y~L~~vI~H~G~--~~~~GHY~~~~k~~~~~~W~~fdD~~V~~i~~~~~~~~~~~~~~~~~ 304 (324)
T cd02668 227 PEILDMGEYLAESDEGSYVYELSGVLIHQGV--SAYSGHYIAHIKDEQTGEWYKFNDEDVEEMPGKPLKLGNSEDPAKPR 304 (324)
T ss_pred CCeEechhhcccccCCCcEEEEEEEEEEcCC--CCCCEeeEEEEECCCCCcEEEEECCceEEcCHHHhhccccccccccc
Confidence 9999999998876667789999999999997 66799999999985 48999999999999976544
Q ss_pred ---------cCCccEEEEEE
Q 001479 828 ---------MSEGAYMLFYM 838 (1071)
Q Consensus 828 ---------ls~~AYILfY~ 838 (1071)
.+..||||||+
T Consensus 305 ~~~~~~~~~~~~~~y~l~y~ 324 (324)
T cd02668 305 KSEIKKGTHSSRTAYMLVYK 324 (324)
T ss_pred ccccCCCccccCceEEEEeC
Confidence 23579999995
No 7
>cd02664 Peptidase_C19H A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.3e-53 Score=481.48 Aligned_cols=274 Identities=34% Similarity=0.570 Sum_probs=239.6
Q ss_pred ccccCCCcccHHHHHHHHHcCHHHHHHHHhcccCcccCCCchhHHHHHHHHHHHHHhC-CCCCChHH-HHHHHHhccccc
Q 001479 535 GLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRES-AGPLSPGR-ILSHMRSISCQI 612 (1071)
Q Consensus 535 GL~NlGNTCYmNSVLQ~L~sip~Fr~~Ll~~~~~~~~~~~~~~ll~qL~kLf~~L~ss-~~~isP~~-fl~~L~k~~~~F 612 (1071)
||.|+||||||||+||+|+++|+||+++++..... .....+++++|+.+|..|... ...+.|.. |+..+. .+.|
T Consensus 1 GL~NlGnTCY~NS~LQ~L~~~~~fr~~ll~~~~~~--~~~~~~~~~~L~~lf~~l~~~~~~~~~~~~~~l~~~~--~~~f 76 (327)
T cd02664 1 GLINLGNTCYMNSVLQALFMAKDFRRQVLSLNLPR--LGDSQSVMKKLQLLQAHLMHTQRRAEAPPDYFLEASR--PPWF 76 (327)
T ss_pred CCcCCcccHHHHHHHHHHHCcHHHHHHHHcCCccc--cCCcchHHHHHHHHHHHHhhcCCcccCCHHHHHHHhc--cccc
Confidence 89999999999999999999999999999865432 223456889999999988754 45666665 665543 4678
Q ss_pred CCCCcCcHHHHHHHHHHHHHHHHhhhcCCCCCCCCccccccccccccceEEEeEEEecCCCCCccccccceeeEEeeecc
Q 001479 613 GDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEIYGW 692 (1071)
Q Consensus 613 ~~g~QQDA~EFL~~LLd~Le~e~~~~~~~e~k~~~~~~~~siI~~lF~g~l~s~ikC~~Cg~~S~~~E~f~~LsL~I~~~ 692 (1071)
..++|||||||+.+||+.|+ ++|.++|+|++.+.++|.+|+.++.+.|.|..|+|+|+
T Consensus 77 ~~~~QqDa~EFl~~lLd~l~--------------------~~i~~~F~G~~~~~i~C~~C~~~s~~~e~f~~l~L~i~-- 134 (327)
T cd02664 77 TPGSQQDCSEYLRYLLDRLH--------------------TLIEKMFGGKLSTTIRCLNCNSTSARTERFRDLDLSFP-- 134 (327)
T ss_pred CCCCcCCHHHHHHHHHHHHH--------------------HHHHhhCcEEeEeEEEcCCCCCEecccccceeeecCCC--
Confidence 99999999999999999997 25789999999999999999999999999999999997
Q ss_pred cccHHHHHHhcCCCCcCCCCCccccccccccceeeEEEEEeecCceEEEEEeeecccc----cccccceEecCccCCCCC
Q 001479 693 VESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQEGR----YGKINKCITFPEMLDMMP 768 (1071)
Q Consensus 693 ~~sLee~L~~f~~~E~LdGdnky~C~~Ck~k~~A~K~~~I~klP~ILiIqLkRF~~~~----~~KI~~~V~FPe~LDL~~ 768 (1071)
+|+++|+.|+.+|.++|+|+|+|++|++++.+.|+..|.++|+||+|||+||.++. ..|+++.|.||..|||..
T Consensus 135 --sl~~~l~~~~~~E~l~g~n~~~C~~C~~~~~a~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fp~~ldl~~ 212 (327)
T cd02664 135 --SVQDLLNYFLSPEKLTGDNQYYCEKCASLQDAEKEMKVTGAPEYLILTLLRFSYDQKTHVREKIMDNVSINEVLSLPV 212 (327)
T ss_pred --CHHHHHHHhcCeeEccCCCceeCCccCCccceeEEEEcccCChhhEEEeeeeEEccccCcceecCceEecCCEEecCc
Confidence 79999999999999999999999999999999999999999999999999997532 369999999999999998
Q ss_pred ccCC-------------------CCCCCCceeEEEEEEEecCCCCCCCceEEEEEECCC---------------------
Q 001479 769 FMTG-------------------TGDTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDMQ--------------------- 808 (1071)
Q Consensus 769 y~~~-------------------~~~~~~~YeL~gVIvH~G~~~S~~sGHYvayVK~~d--------------------- 808 (1071)
++.. .......|+|+|||+|.|. ++++|||+||+|...
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~~Vi~H~G~--~~~~GHY~a~~r~~~~~~~~~~~~~~~~~~~~~~~~ 290 (327)
T cd02664 213 RVESKSSESPLEKKEEESGDDGELVTRQVHYRLYAVVVHSGY--SSESGHYFTYARDQTDADSTGQECPEPKDAEENDES 290 (327)
T ss_pred cccccccccccccccccccccccccCCCceEEEEEEEEEccC--CCCCcceEEEEecCCccccccccccccccccccCCC
Confidence 8631 1124579999999999997 567999999999754
Q ss_pred CCEEEEcCCeeeeecCCcccC-------CccEEEEEE
Q 001479 809 GTWFRIDDTQVHPVPMSQVMS-------EGAYMLFYM 838 (1071)
Q Consensus 809 g~Wy~FNDs~Vt~vs~eeVls-------~~AYILfY~ 838 (1071)
++||+|||+.|+.++.++|.+ ..||||||+
T Consensus 291 ~~W~~fnD~~V~~~~~~~v~~~~~~~~~~~aYlLfY~ 327 (327)
T cd02664 291 KNWYLFNDSRVTFSSFESVQNVTSRFPKDTPYILFYE 327 (327)
T ss_pred CCEEEEeCCceEECCHHHHHHhhCCCCCCCEEEEEeC
Confidence 789999999999999988875 789999995
No 8
>cd02671 Peptidase_C19O A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=3e-53 Score=479.47 Aligned_cols=273 Identities=29% Similarity=0.516 Sum_probs=234.6
Q ss_pred CcCCcccccCCCcccHHHHHHHHHcCHHHHHHHHhcccCcccCCCchhHHHHHHHHHHHH---H-hCCCCCChHHHHHHH
Q 001479 530 LLSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMML---R-ESAGPLSPGRILSHM 605 (1071)
Q Consensus 530 ~~gp~GL~NlGNTCYmNSVLQ~L~sip~Fr~~Ll~~~~~~~~~~~~~~ll~qL~kLf~~L---~-ss~~~isP~~fl~~L 605 (1071)
..+++||.|+|||||||||||+|+++|+|++++....... ....+++.++..| . .....+.|..|+..+
T Consensus 21 ~~~~~GL~NlGnTCYmNSvLQ~L~~~p~fr~~l~~~~~~~-------~~~~~~q~~~~~l~~~~~~~~~~~~P~~~~~~l 93 (332)
T cd02671 21 LLPFVGLNNLGNTCYLNSVLQVLYFCPGFKHGLKHLVSLI-------SSVEQLQSSFLLNPEKYNDELANQAPRRLLNAL 93 (332)
T ss_pred CCCCcceeccCceEeHHHHHHHHHcChHHHHHHHhhhccc-------CcHHHHHHHHHHHHHHHhhcccccCHHHHHHHH
Confidence 3789999999999999999999999999999986543111 1122333333322 2 233456799999999
Q ss_pred HhcccccCCCCcCcHHHHHHHHHHHHHHHHhhhcCCCCCCCCccccccccccccceEEEeEEEecCCCCCccccccceee
Q 001479 606 RSISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDL 685 (1071)
Q Consensus 606 ~k~~~~F~~g~QQDA~EFL~~LLd~Le~e~~~~~~~e~k~~~~~~~~siI~~lF~g~l~s~ikC~~Cg~~S~~~E~f~~L 685 (1071)
++.++.|..+.||||+|||.+|||.|+. +|.++|+|.+..+++|.+|++.+.+.|+|++|
T Consensus 94 ~~~~~~f~~~~QQDA~EFl~~LLd~L~~--------------------~i~~~F~g~~~~~~~C~~C~~~s~~~E~f~~l 153 (332)
T cd02671 94 REVNPMYEGYLQHDAQEVLQCILGNIQE--------------------LVEKDFQGQLVLRTRCLECETFTERREDFQDI 153 (332)
T ss_pred HHhccccCCccccCHHHHHHHHHHHHHH--------------------HHHhhhceEEEEEEEeCCCCCeeceecccEEE
Confidence 9999999999999999999999999974 46789999999999999999999999999999
Q ss_pred EEeeecc------------------cccHHHHHHhcCCCCcCCCCCccccccccccceeeEEEEEeecCceEEEEEeeec
Q 001479 686 TLEIYGW------------------VESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQ 747 (1071)
Q Consensus 686 sL~I~~~------------------~~sLee~L~~f~~~E~LdGdnky~C~~Ck~k~~A~K~~~I~klP~ILiIqLkRF~ 747 (1071)
+|+|++. ..+|++||+.|+.+|.++|+|+|+|++|+.++.|.|+..|.++|+||+|||+||.
T Consensus 154 sL~i~~~~~~~~~~~~~~~~~~~~~~~tL~~~L~~f~~~E~l~g~n~y~C~~C~~~~~a~k~~~~~~~P~vL~i~LkRF~ 233 (332)
T cd02671 154 SVPVQESELSKSEESSEISPDPKTEMKTLKWAISQFASVERIVGEDKYFCENCHHYTEAERSLLFDKLPEVITIHLKCFA 233 (332)
T ss_pred EEEeCCCcccccccccccccccccccCCHHHHHHHhCCcceecCCCCeeCCCCCCceeEEEEEEEecCCCEEEEEeeeec
Confidence 9999864 2589999999999999999999999999999999999999999999999999998
Q ss_pred cc--------ccccccceEecCccCCCCCccCCCCCCCCceeEEEEEEEecCCCCCCCceEEEEEECCCCCEEEEcCCee
Q 001479 748 EG--------RYGKINKCITFPEMLDMMPFMTGTGDTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDMQGTWFRIDDTQV 819 (1071)
Q Consensus 748 ~~--------~~~KI~~~V~FPe~LDL~~y~~~~~~~~~~YeL~gVIvH~G~~~S~~sGHYvayVK~~dg~Wy~FNDs~V 819 (1071)
.. ...|++..|.||..|||.++... .....|+|+|||+|.|. +.++|||+|||| ||+|||+.|
T Consensus 234 ~~~~~~~~~~~~~Ki~~~v~fp~~L~~~~~~~~--~~~~~Y~L~~VI~H~G~--~~~~GHY~a~vr-----W~~fdD~~V 304 (332)
T cd02671 234 ANGSEFDCYGGLSKVNTPLLTPLKLSLEEWSTK--PKNDVYRLFAVVMHSGA--TISSGHYTAYVR-----WLLFDDSEV 304 (332)
T ss_pred cccccccccCCceecCccccCccccccccccCC--CCCCeEEEEEEEEEcCC--CCCCCeEEEEEE-----EEEEcCcce
Confidence 42 35799999999999999877543 34589999999999997 567999999999 999999999
Q ss_pred eeecCCccc---------CCccEEEEEE
Q 001479 820 HPVPMSQVM---------SEGAYMLFYM 838 (1071)
Q Consensus 820 t~vs~eeVl---------s~~AYILfY~ 838 (1071)
+.++++++. ...||||||+
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~aYiLfY~ 332 (332)
T cd02671 305 KVTEEKDFLEALSPNTSSTSTPYLLFYK 332 (332)
T ss_pred EEccHHHHHhhcCCCCCCCCceEEEEEC
Confidence 999876654 2579999995
No 9
>cd02657 Peptidase_C19A A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.2e-52 Score=464.87 Aligned_cols=283 Identities=27% Similarity=0.361 Sum_probs=247.9
Q ss_pred ccccCCCcccHHHHHHHHHcCHHHHHHHHhcccCcc-cCCCchhHHHHHHHHHHHHHhCCCCCChHHHHHHHHhcccccC
Q 001479 535 GLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSA-CCGKDWCLMCELEQHVMMLRESAGPLSPGRILSHMRSISCQIG 613 (1071)
Q Consensus 535 GL~NlGNTCYmNSVLQ~L~sip~Fr~~Ll~~~~~~~-~~~~~~~ll~qL~kLf~~L~ss~~~isP~~fl~~L~k~~~~F~ 613 (1071)
||.|+|||||||||||+|+++|+|+++++....... ......+++++|++||..|+.....++|..|+..+++..+.|.
T Consensus 1 Gl~N~GntCy~NsvLQ~L~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~i~p~~~~~~l~~~~~~f~ 80 (305)
T cd02657 1 GLTNLGNTCYLNSTLQCLRSVPELRDALKNYNPARRGANQSSDNLTNALRDLFDTMDKKQEPVPPIEFLQLLRMAFPQFA 80 (305)
T ss_pred CcccccchhHHHHHHHHHhCCHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHhCCCcCCcHHHHHHHHHHCcCcc
Confidence 899999999999999999999999999987654321 2234678999999999999988889999999999999888884
Q ss_pred ------CCCcCcHHHHHHHHHHHHHHHHhhhcCCCCCCCCccccccccccccceEEEeEEEecCCC-CCccccccceeeE
Q 001479 614 ------DGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCS-HESERYENIMDLT 686 (1071)
Q Consensus 614 ------~g~QQDA~EFL~~LLd~Le~e~~~~~~~e~k~~~~~~~~siI~~lF~g~l~s~ikC~~Cg-~~S~~~E~f~~Ls 686 (1071)
.++||||+|||.+||+.|++++.. .....++|.++|+|++.+.++|..|+ ..+.+.|+|+.|+
T Consensus 81 ~~~~~~~~~QqDA~EFl~~lld~L~~~~~~----------~~~~~~~i~~~F~g~~~~~~~C~~C~~~~~~~~e~f~~Ls 150 (305)
T cd02657 81 EKQNQGGYAQQDAEECWSQLLSVLSQKLPG----------AGSKGSFIDQLFGIELETKMKCTESPDEEEVSTESEYKLQ 150 (305)
T ss_pred cccCCCCccccCHHHHHHHHHHHHHHHhcc----------cCCCCcHHHHhhceEEEEEEEcCCCCCCCccccccceEEE
Confidence 459999999999999999987532 11235689999999999999999999 7999999999999
Q ss_pred Eeeecc--cccHHHHHHhcCCCCcCCCCCccccccccccceeeEEEEEeecCceEEEEEeeeccc----ccccccceEec
Q 001479 687 LEIYGW--VESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQEG----RYGKINKCITF 760 (1071)
Q Consensus 687 L~I~~~--~~sLee~L~~f~~~E~LdGdnky~C~~Ck~k~~A~K~~~I~klP~ILiIqLkRF~~~----~~~KI~~~V~F 760 (1071)
|+|+.. ..+|+++|..++.++.. ..|+.|+....+.|+..|.++|++|+|||+||.++ ...|++..|.|
T Consensus 151 l~i~~~~~~~~l~~~L~~~~~~~~~-----~~~~~~~~~~~~~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~f 225 (305)
T cd02657 151 CHISITTEVNYLQDGLKKGLEEEIE-----KHSPTLGRDAIYTKTSRISRLPKYLTVQFVRFFWKRDIQKKAKILRKVKF 225 (305)
T ss_pred eecCCCcccccHHHHHHHhhhhhhh-----hcCcccCCCceEEEEEEeccCCcEEEEEEECCccccccCceeecCcEEEC
Confidence 999875 46899999999986653 46889998888999999999999999999999753 33699999999
Q ss_pred CccCCCCCccCCCCCCCCceeEEEEEEEecCCCCCCCceEEEEEECCC-CCEEEEcCCeeeeecCCcccC-------Ccc
Q 001479 761 PEMLDMMPFMTGTGDTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDMQ-GTWFRIDDTQVHPVPMSQVMS-------EGA 832 (1071)
Q Consensus 761 Pe~LDL~~y~~~~~~~~~~YeL~gVIvH~G~~~S~~sGHYvayVK~~d-g~Wy~FNDs~Vt~vs~eeVls-------~~A 832 (1071)
|.+|||.+|+. .+.+|+|+|||+|.|. ++.+|||+||+|..+ ++||+|||+.|++++.++|.. ..|
T Consensus 226 P~~Ldl~~~~~----~~~~Y~L~~vI~H~G~--~~~~GHY~~~~~~~~~~~W~~fdD~~V~~~~~~~v~~~~~~~~~~~a 299 (305)
T cd02657 226 PFELDLYELCT----PSGYYELVAVITHQGR--SADSGHYVAWVRRKNDGKWIKFDDDKVSEVTEEDILKLSGGGDWHIA 299 (305)
T ss_pred CceEecccccC----CCCcEEEEEEEEecCC--CCCCcEEEEEEEcCCCCeEEEEECCceEEeCHHHHHhhcCCCCCceE
Confidence 99999999987 3578999999999997 667999999999865 899999999999999888874 589
Q ss_pred EEEEEE
Q 001479 833 YMLFYM 838 (1071)
Q Consensus 833 YILfY~ 838 (1071)
|||||+
T Consensus 300 YiL~Y~ 305 (305)
T cd02657 300 YILLYK 305 (305)
T ss_pred EEEEEC
Confidence 999996
No 10
>cd02667 Peptidase_C19K A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=9.1e-53 Score=464.35 Aligned_cols=246 Identities=40% Similarity=0.688 Sum_probs=225.2
Q ss_pred ccccCCCcccHHHHHHHHHcCHHHHHHHHhcccCcccCCCchhHHHHHHHHHHHHHhCCCCCChHHHHHHHHhcccccCC
Q 001479 535 GLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESAGPLSPGRILSHMRSISCQIGD 614 (1071)
Q Consensus 535 GL~NlGNTCYmNSVLQ~L~sip~Fr~~Ll~~~~~~~~~~~~~~ll~qL~kLf~~L~ss~~~isP~~fl~~L~k~~~~F~~ 614 (1071)
||.|+|||||||||||+|+++|+|+++++. .|..|+..+...++.|..
T Consensus 1 Gl~N~GntCy~NsvLQ~L~~~~~~~~~~l~--------------------------------~P~~~~~~l~~~~~~f~~ 48 (279)
T cd02667 1 GLSNLGNTCFFNAVMQNLSQTPALRELLSE--------------------------------TPKELFSQVCRKAPQFKG 48 (279)
T ss_pred CCcCCCCchHHHHHHHHHhcCHHHHHHHHH--------------------------------CHHHHHHHHHHhhHhhcC
Confidence 899999999999999999999999999876 677888888888889999
Q ss_pred CCcCcHHHHHHHHHHHHHHHHhhhcCCCCCCCCccccccccccccceEEEeEEEecCCCCCccccccceeeEEeeec---
Q 001479 615 GSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEIYG--- 691 (1071)
Q Consensus 615 g~QQDA~EFL~~LLd~Le~e~~~~~~~e~k~~~~~~~~siI~~lF~g~l~s~ikC~~Cg~~S~~~E~f~~LsL~I~~--- 691 (1071)
++||||+|||.+||+.|+. +|.++|.|++.+.++|..|++.+.+.|.|+.|+|+++.
T Consensus 49 ~~QqDA~Efl~~lld~l~~--------------------~i~~~F~G~~~~~i~C~~C~~~s~~~E~f~~L~Lp~~~~~~ 108 (279)
T cd02667 49 YQQQDSHELLRYLLDGLRT--------------------FIDSIFGGELTSTIMCESCGTVSLVYEPFLDLSLPRSDEIK 108 (279)
T ss_pred CchhhHHHHHHHHHHHHHH--------------------hhhhhcceEEEEEEEcCCCCCEeCccccceEEecCCCcccC
Confidence 9999999999999999972 57899999999999999999999999999999998863
Q ss_pred ccccHHHHHHhcCCCCcCCCCCccccccccccceeeEEEEEeecCceEEEEEeeecccc---cccccceEecCccCCCCC
Q 001479 692 WVESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQEGR---YGKINKCITFPEMLDMMP 768 (1071)
Q Consensus 692 ~~~sLee~L~~f~~~E~LdGdnky~C~~Ck~k~~A~K~~~I~klP~ILiIqLkRF~~~~---~~KI~~~V~FPe~LDL~~ 768 (1071)
...+|++||+.|+.+|.++|+|+|.|++|++ |.|+..|.++|++|+|||+||..+. ..|++..|.||+.|||.+
T Consensus 109 ~~~sL~~~L~~~~~~E~l~~~~~~~C~~C~~---a~k~~~i~~~P~~Lii~LkRF~~~~~~~~~Ki~~~v~fP~~Ldl~~ 185 (279)
T cd02667 109 SECSIESCLKQFTEVEILEGNNKFACENCTK---AKKQYLISKLPPVLVIHLKRFQQPRSANLRKVSRHVSFPEILDLAP 185 (279)
T ss_pred CCCCHHHHHHhhcCeeEecCCCcccCCccCc---eeeEeEhhhCCCeEEEEEeccccCcccCceecCceEeCCCccchhh
Confidence 2468999999999999999999999999987 8899999999999999999998653 479999999999999999
Q ss_pred ccCC-----CCCCCCceeEEEEEEEecCCCCCCCceEEEEEECC----------------------CCCEEEEcCCeeee
Q 001479 769 FMTG-----TGDTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDM----------------------QGTWFRIDDTQVHP 821 (1071)
Q Consensus 769 y~~~-----~~~~~~~YeL~gVIvH~G~~~S~~sGHYvayVK~~----------------------dg~Wy~FNDs~Vt~ 821 (1071)
|+.. .......|+|+|||+|.|. . ++|||+||+|.. +++||+|||+.|++
T Consensus 186 ~~~~~~~~~~~~~~~~Y~L~~vi~H~G~--~-~~GHY~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~dD~~V~~ 262 (279)
T cd02667 186 FCDPKCNSSEDKSSVLYRLYGVVEHSGT--M-RSGHYVAYVKVRPPQQRLSDLTKSKPAADEAGPGSGQWYYISDSDVRE 262 (279)
T ss_pred ccCccccccccCCCceEEEEEEEEEeCC--C-CCCEeEEEEEcCccccccccccccccccccCCCCCCcEEEEECCccEE
Confidence 9876 2335689999999999997 3 699999999973 57999999999999
Q ss_pred ecCCcccCCccEEEEEE
Q 001479 822 VPMSQVMSEGAYMLFYM 838 (1071)
Q Consensus 822 vs~eeVls~~AYILfY~ 838 (1071)
++.++|....||||||+
T Consensus 263 v~~~~v~~~~aYiLfYe 279 (279)
T cd02667 263 VSLEEVLKSEAYLLFYE 279 (279)
T ss_pred CCHHHhccCCcEEEEeC
Confidence 99999999999999995
No 11
>cd02658 Peptidase_C19B A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=4.6e-52 Score=463.91 Aligned_cols=275 Identities=27% Similarity=0.356 Sum_probs=240.6
Q ss_pred ccccCCCcccHHHHHHHHHcCHHHHHHHHhcccC--cccCCCchhHHHHHHHHHHHHHhC---------------CCCCC
Q 001479 535 GLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHS--SACCGKDWCLMCELEQHVMMLRES---------------AGPLS 597 (1071)
Q Consensus 535 GL~NlGNTCYmNSVLQ~L~sip~Fr~~Ll~~~~~--~~~~~~~~~ll~qL~kLf~~L~ss---------------~~~is 597 (1071)
||.|+|||||||||||+|+++|+|+++++..... .....+..++.++|++|+..|++. ..++.
T Consensus 1 GL~NlGNTCY~NsvLQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~i~ 80 (311)
T cd02658 1 GLRNLGNSCYLNSVLQVLFSIPSFQWRYDDLENKFPSDVVDPANDLNCQLIKLADGLLSGRYSKPASLKSENDPYQVGIK 80 (311)
T ss_pred CcccCCcchHHHHHHHHHHCCHHHHHHHhhhccccCCCcCCccccHHHHHHHHHHHhcCCCcCCCccccccccccccccC
Confidence 8999999999999999999999999999863322 222345678999999999998752 34689
Q ss_pred hHHHHHHHHhcccccCCCCcCcHHHHHHHHHHHHHHHHhhhcCCCCCCCCccccccccccccceEEEeEEEecCCCCCcc
Q 001479 598 PGRILSHMRSISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESE 677 (1071)
Q Consensus 598 P~~fl~~L~k~~~~F~~g~QQDA~EFL~~LLd~Le~e~~~~~~~e~k~~~~~~~~siI~~lF~g~l~s~ikC~~Cg~~S~ 677 (1071)
|..|+..++..++.|..+.||||+|||++||+.|++++... ....+.++|+|.+...++|..|+.++.
T Consensus 81 p~~~~~~l~~~~~~f~~~~QqDa~Efl~~ll~~l~~~~~~~------------~~~~~~~~f~~~~~~~i~C~~C~~~s~ 148 (311)
T cd02658 81 PSMFKALIGKGHPEFSTMRQQDALEFLLHLIDKLDRESFKN------------LGLNPNDLFKFMIEDRLECLSCKKVKY 148 (311)
T ss_pred cHHHHHHHhccChhhcccccccHHHHHHHHHHHHHHhhccc------------ccCCchhheEEEeeEEEEcCCCCCEEE
Confidence 99999999999999999999999999999999999875321 123477999999999999999999999
Q ss_pred ccccceeeEEeeecc-------------cccHHHHHHhcCCCCcCCCCCccccccccccceeeEEEEEeecCceEEEEEe
Q 001479 678 RYENIMDLTLEIYGW-------------VESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLK 744 (1071)
Q Consensus 678 ~~E~f~~LsL~I~~~-------------~~sLee~L~~f~~~E~LdGdnky~C~~Ck~k~~A~K~~~I~klP~ILiIqLk 744 (1071)
+.++|..|+|+++.. ..+|+++|+.|+.+|.++ ++|+.|++++.+.|+..|.++|++|+|||+
T Consensus 149 ~~e~~~~lsL~l~~~~~~~~~~~~~~~~~~sl~~~L~~~~~~e~i~----~~C~~C~~~~~a~k~~~i~~lP~vLii~Lk 224 (311)
T cd02658 149 TSELSEILSLPVPKDEATEKEEGELVYEPVPLEDCLKAYFAPETIE----DFCSTCKEKTTATKTTGFKTFPDYLVINMK 224 (311)
T ss_pred eecceeEEeeecccccccccccccccCCCCCHHHHHHHHcCccccc----ccccCCCCcccEEEEEEeecCCceEEEEeE
Confidence 999999999998853 248999999999999998 689999999999999999999999999999
Q ss_pred eeccc-c--cccccceEecCccCCCCCccCCCCCCCCceeEEEEEEEecCCCCCCCceEEEEEECC---CCCEEEEcCCe
Q 001479 745 RFQEG-R--YGKINKCITFPEMLDMMPFMTGTGDTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDM---QGTWFRIDDTQ 818 (1071)
Q Consensus 745 RF~~~-~--~~KI~~~V~FPe~LDL~~y~~~~~~~~~~YeL~gVIvH~G~~~S~~sGHYvayVK~~---dg~Wy~FNDs~ 818 (1071)
||... . ..|++..|.||..| ....|+|+|||+|.|. +.++|||+||+|.. +++||+|||+.
T Consensus 225 RF~~~~~~~~~Ki~~~v~~p~~l-----------~~~~Y~L~~vI~H~G~--~~~~GHY~~~vk~~~~~~~~W~~fnD~~ 291 (311)
T cd02658 225 RFQLLENWVPKKLDVPIDVPEEL-----------GPGKYELIAFISHKGT--SVHSGHYVAHIKKEIDGEGKWVLFNDEK 291 (311)
T ss_pred EEEecCCCceEeeccccccCCcC-----------CCCcEEEEEEEEccCC--CCCCcceEEEEeCCCCCCCCEEEecCce
Confidence 99863 2 36999999999877 3468999999999997 56799999999985 28999999999
Q ss_pred eeeecCCcccCCccEEEEEE
Q 001479 819 VHPVPMSQVMSEGAYMLFYM 838 (1071)
Q Consensus 819 Vt~vs~eeVls~~AYILfY~ 838 (1071)
|++++..++..+.||||||+
T Consensus 292 V~~~~~~~~~~~~~YilfY~ 311 (311)
T cd02658 292 VVASQDPPEMKKLGYIYFYQ 311 (311)
T ss_pred eEECCcccccCCcceEEEEC
Confidence 99999999999999999996
No 12
>cd02659 peptidase_C19C A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.4e-51 Score=461.89 Aligned_cols=294 Identities=32% Similarity=0.517 Sum_probs=249.0
Q ss_pred CCcccccCCCcccHHHHHHHHHcCHHHHHHHHhcccCcccCCCchhHHHHHHHHHHHHHhCCC-CCChHHHHHHHHh-cc
Q 001479 532 SPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESAG-PLSPGRILSHMRS-IS 609 (1071)
Q Consensus 532 gp~GL~NlGNTCYmNSVLQ~L~sip~Fr~~Ll~~~~~~~~~~~~~~ll~qL~kLf~~L~ss~~-~isP~~fl~~L~k-~~ 609 (1071)
|++||.|+||||||||+||+|+++|+|+++++..... .......++.++|+.||..|+.... .+.|..+. .+.. ..
T Consensus 1 g~~GL~N~GntCY~NsvLQ~L~~~~~f~~~~l~~~~~-~~~~~~~~~~~~l~~lf~~~~~~~~~~~~~~~~~-~~~~~~~ 78 (334)
T cd02659 1 GYVGLKNQGATCYMNSLLQQLYMTPEFRNAVYSIPPT-EDDDDNKSVPLALQRLFLFLQLSESPVKTTELTD-KTRSFGW 78 (334)
T ss_pred CCCCcccCCcchHHHHHHHHHhcCHHHHHHHHcCCCc-ccCcccccHHHHHHHHHHHHHhCCccccCcchhh-eeccCCC
Confidence 5799999999999999999999999999999985322 1224567799999999999986543 34444433 2222 23
Q ss_pred cccCCCCcCcHHHHHHHHHHHHHHHHhhhcCCCCCCCCccccccccccccceEEEeEEEecCCCCCccccccceeeEEee
Q 001479 610 CQIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEI 689 (1071)
Q Consensus 610 ~~F~~g~QQDA~EFL~~LLd~Le~e~~~~~~~e~k~~~~~~~~siI~~lF~g~l~s~ikC~~Cg~~S~~~E~f~~LsL~I 689 (1071)
..|..++||||+|||.+||+.|++++... ...++|.++|+|.+...++|..|+..+...++|+.|+|++
T Consensus 79 ~~~~~~~QqDa~Efl~~ll~~l~~~~~~~-----------~~~~~i~~lF~g~~~~~~~C~~C~~~s~~~e~f~~l~l~i 147 (334)
T cd02659 79 DSLNTFEQHDVQEFFRVLFDKLEEKLKGT-----------GQEGLIKNLFGGKLVNYIICKECPHESEREEYFLDLQVAV 147 (334)
T ss_pred CCCCcccchhHHHHHHHHHHHHHHHhccC-----------cccchhhhhCceEEEeEEEecCCCceecccccceEEEEEc
Confidence 56788999999999999999999875321 1235789999999999999999999999999999999999
Q ss_pred ecccccHHHHHHhcCCCCcCCCCCccccccccccceeeEEEEEeecCceEEEEEeeeccc----ccccccceEecCccCC
Q 001479 690 YGWVESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQEG----RYGKINKCITFPEMLD 765 (1071)
Q Consensus 690 ~~~~~sLee~L~~f~~~E~LdGdnky~C~~Ck~k~~A~K~~~I~klP~ILiIqLkRF~~~----~~~KI~~~V~FPe~LD 765 (1071)
+. ..+|+++|+.|+.+|.++|.+.|.|++|++++.+.++..|.++|++|+|||+||..+ ...|++..|.||..||
T Consensus 148 ~~-~~~l~~~l~~~~~~e~l~~~~~~~C~~C~~~~~~~k~~~i~~lP~vLii~l~Rf~~~~~~~~~~K~~~~v~fp~~Ld 226 (334)
T cd02659 148 KG-KKNLEESLDAYVQGETLEGDNKYFCEKCGKKVDAEKGVCFKKLPPVLTLQLKRFEFDFETMMRIKINDRFEFPLELD 226 (334)
T ss_pred CC-CCCHHHHHHHhcCeeEecCCccEecCcCCCcccEEEEEEeecCCCEEEEEeeeeEEccccCcceeCCceEeCCceec
Confidence 86 579999999999999999999999999999999999999999999999999999753 3469999999999999
Q ss_pred CCCccCCC-----------CCCCCceeEEEEEEEecCCCCCCCceEEEEEECC-CCCEEEEcCCeeeeecCCccc-----
Q 001479 766 MMPFMTGT-----------GDTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDM-QGTWFRIDDTQVHPVPMSQVM----- 828 (1071)
Q Consensus 766 L~~y~~~~-----------~~~~~~YeL~gVIvH~G~~~S~~sGHYvayVK~~-dg~Wy~FNDs~Vt~vs~eeVl----- 828 (1071)
|.+++... ......|+|+|||+|.|+ .++|||+||+|.. +++||+|||+.|+++++++|.
T Consensus 227 l~~~~~~~~~~~~~~~~~~~~~~~~Y~L~~vI~H~G~---~~~GHY~~~vk~~~~~~W~~~nD~~V~~i~~~~v~~~~~g 303 (334)
T cd02659 227 MEPYTEKGLAKKEGDSEKKDSESYIYELHGVLVHSGD---AHGGHYYSYIKDRDDGKWYKFNDDVVTPFDPNDAEEECFG 303 (334)
T ss_pred CccccccccccccccccccCCCCeeEEEEEEEEecCC---CCCCCeEEEEECCCCCceEEEeCcccEECCHHHHHHHcCC
Confidence 99998653 234678999999999995 3589999999974 689999999999999988874
Q ss_pred -----------------CCccEEEEEEEcCC
Q 001479 829 -----------------SEGAYMLFYMRSCP 842 (1071)
Q Consensus 829 -----------------s~~AYILfY~R~s~ 842 (1071)
...||||||+|.++
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~ay~l~Y~~~~~ 334 (334)
T cd02659 304 GEETQKTYDSGPRAFKRTTNAYMLFYERKSP 334 (334)
T ss_pred CccccccccccccccccccceEEEEEEEeCC
Confidence 23599999999764
No 13
>cd02669 Peptidase_C19M A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.8e-49 Score=464.49 Aligned_cols=287 Identities=21% Similarity=0.293 Sum_probs=240.7
Q ss_pred cCCcCCcccccCCCcccHHHHHHHHHcCHHHHHHHHhcccCcccCCCchhHHHHHHHHHHHHHhC---CCCCChHHHHHH
Q 001479 528 IDLLSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRES---AGPLSPGRILSH 604 (1071)
Q Consensus 528 ~~~~gp~GL~NlGNTCYmNSVLQ~L~sip~Fr~~Ll~~~~~~~~~~~~~~ll~qL~kLf~~L~ss---~~~isP~~fl~~ 604 (1071)
+. +|++||.|+|||||||||||+|+++|+||++++...+.........++.++|..++..+++. ...++|..|+..
T Consensus 115 ~~-~G~vGL~NlGnTCYmNsvLQ~L~~~p~lr~~~l~~~~~~~~~~~~~~l~~~l~~l~~kl~~~~~~~~~isP~~fl~~ 193 (440)
T cd02669 115 YL-PGFVGLNNIKNNDYANVIIQALSHVKPIRNFFLLYENYENIKDRKSELVKRLSELIRKIWNPRNFKGHVSPHELLQA 193 (440)
T ss_pred cc-CCccCccCCCCchHHHHHHHHHHCCHHHHHHHhhccccccccCCCcHHHHHHHHHHHHHhccccCCCccCHHHHHHH
Confidence 34 88999999999999999999999999999999986554322234568999999999999865 468999999999
Q ss_pred HHhcc-cccCCCCcCcHHHHHHHHHHHHHHHHhhhcCCCCCCCCccccccccccccceEEEeEEEecCCC----------
Q 001479 605 MRSIS-CQIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCS---------- 673 (1071)
Q Consensus 605 L~k~~-~~F~~g~QQDA~EFL~~LLd~Le~e~~~~~~~e~k~~~~~~~~siI~~lF~g~l~s~ikC~~Cg---------- 673 (1071)
+.... ..|..++||||+|||++||+.|++++... .....++|+++|+|+++..++|..|.
T Consensus 194 l~~~~~~~f~~~~QqDA~EFl~~LLd~L~~~l~~~---------~~~~~~ii~~~F~G~l~~~~~c~~~~~~~~~~~~~~ 264 (440)
T cd02669 194 VSKVSKKKFSITEQSDPVEFLSWLLNTLHKDLGGS---------KKPNSSIIHDCFQGKVQIETQKIKPHAEEEGSKDKF 264 (440)
T ss_pred HHhhcccccCCcccCCHHHHHHHHHHHHHHHhccC---------CCCCCCcceeccCceEEEEEEeeccccccccccccc
Confidence 98764 67899999999999999999999875321 12346799999999999999987654
Q ss_pred ----C-CccccccceeeEEeeeccc-------------ccHHHHHHhcCCCCcCCCCCccccccccccceeeEEEEEeec
Q 001479 674 ----H-ESERYENIMDLTLEIYGWV-------------ESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEA 735 (1071)
Q Consensus 674 ----~-~S~~~E~f~~LsL~I~~~~-------------~sLee~L~~f~~~E~LdGdnky~C~~Ck~k~~A~K~~~I~kl 735 (1071)
. .+.+.++|++|+|+|+... .+|+++|+. |.|+.|.....+.|+..|.++
T Consensus 265 ~~c~~~~s~~~~pF~~LsLdip~~~~~~~~~~~~~l~~~~l~e~L~k------------y~~~~c~~~~~a~k~~~I~~L 332 (440)
T cd02669 265 FKDSRVKKTSVSPFLLLTLDLPPPPLFKDGNEENIIPQVPLKQLLKK------------YDGKTETELKDSLKRYLISRL 332 (440)
T ss_pred ccccccceeeeccceEEEecCCCCccccccccccccCcccHHHHHHh------------cCCccceecccceEEEEEeeC
Confidence 2 3567899999999998631 355555542 667788888889999999999
Q ss_pred CceEEEEEeeecccc--cccccceEecCcc-CCCCCccCCC---CCCCCceeEEEEEEEecCCCCCCCceEEEEEECC-C
Q 001479 736 PNILTIVLKRFQEGR--YGKINKCITFPEM-LDMMPFMTGT---GDTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDM-Q 808 (1071)
Q Consensus 736 P~ILiIqLkRF~~~~--~~KI~~~V~FPe~-LDL~~y~~~~---~~~~~~YeL~gVIvH~G~~~S~~sGHYvayVK~~-d 808 (1071)
|+||+||||||.... ..|+...|.||.. |||.+|+... ......|+|+|||+|.|. .+++|||+||+|+. +
T Consensus 333 P~vLiihLKRF~~~~~~~~K~~t~V~FP~~~LDm~~y~~~~~~~~~~~~~Y~L~avI~H~G~--~~~sGHY~a~v~~~~~ 410 (440)
T cd02669 333 PKYLIFHIKRFSKNNFFKEKNPTIVNFPIKNLDLSDYVHFDKPSLNLSTKYNLVANIVHEGT--PQEDGTWRVQLRHKST 410 (440)
T ss_pred CcEEEEEEecccCCCCccccCCCEEECCCCccchhhhhCccccccCCCceEEEEEEEEEecc--CCCCeeEEEEEEcCCC
Confidence 999999999998643 3699999999986 8999998632 245689999999999997 33699999999963 7
Q ss_pred CCEEEEcCCeeeeecCCcccCCccEEEEEE
Q 001479 809 GTWFRIDDTQVHPVPMSQVMSEGAYMLFYM 838 (1071)
Q Consensus 809 g~Wy~FNDs~Vt~vs~eeVls~~AYILfY~ 838 (1071)
|+||+|||+.|++++.++|....||||||+
T Consensus 411 ~~W~~fdD~~V~~v~~~~v~~~eaYll~Y~ 440 (440)
T cd02669 411 NKWFEIQDLNVKEVLPQLIFLSESYIQIWE 440 (440)
T ss_pred CeEEEEECCeeeEcCHHHhccCCceEEEeC
Confidence 899999999999999999999999999996
No 14
>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.9e-48 Score=440.03 Aligned_cols=308 Identities=27% Similarity=0.464 Sum_probs=268.0
Q ss_pred cCCcccccCCCcccHHHHHHHHHcCHHHHHHHHhcccCcccCC-----CchhHHHHHHHHHHHHHhC-CCCCChHHHHHH
Q 001479 531 LSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCG-----KDWCLMCELEQHVMMLRES-AGPLSPGRILSH 604 (1071)
Q Consensus 531 ~gp~GL~NlGNTCYmNSVLQ~L~sip~Fr~~Ll~~~~~~~~~~-----~~~~ll~qL~kLf~~L~ss-~~~isP~~fl~~ 604 (1071)
.|.+||.|+||||||||.||||.|++.+++||+...+....+. -...+..++..|+.++... ...+.|..|+..
T Consensus 263 ~GtcGL~NlGNTCyMNSaLQCL~ht~eLrdyFlsdeye~~iNe~Nplgmhg~vAsayadLik~ly~~~~haf~Ps~fK~t 342 (823)
T COG5560 263 AGTCGLRNLGNTCYMNSALQCLMHTWELRDYFLSDEYEESINEENPLGMHGSVASAYADLIKQLYDGNLHAFTPSGFKKT 342 (823)
T ss_pred ccccceecCCcceecchHHHHHhccHHHHHHhhhhhhHhhhcccCccchhhhHHHHHHHHHHHHhCccccccChHHHHHH
Confidence 4678999999999999999999999999999998766554432 3456888888888888754 457999999999
Q ss_pred HHhcccccCCCCcCcHHHHHHHHHHHHHHHHhhhcCCCCCCCC---------------------ccccccccccccceEE
Q 001479 605 MRSISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDP---------------------RLQETTFIQHTFGGRL 663 (1071)
Q Consensus 605 L~k~~~~F~~g~QQDA~EFL~~LLd~Le~e~~~~~~~e~k~~~---------------------~~~~~siI~~lF~g~l 663 (1071)
++.++..|.++.|||.+||+.+|||.||+++...........| ..++.++|.++|.|.+
T Consensus 343 IG~fn~~fsGy~QQDSqEFiaflLDgLHEdLnRI~~KpytskPdL~~~d~~~vKk~a~ecW~~H~kRNdSiItdLFqgmy 422 (823)
T COG5560 343 IGSFNEEFSGYDQQDSQEFIAFLLDGLHEDLNRIIKKPYTSKPDLSPGDDVVVKKKAKECWWEHLKRNDSIITDLFQGMY 422 (823)
T ss_pred HhhhHHHhcCccchhHHHHHHHHHHHHHHHHHHhhcCcccCCCCCCCcchHHHHHHHHHHHHHHHhcCcccHHHHHHHHh
Confidence 9999999999999999999999999999987643332222222 1246789999999999
Q ss_pred EeEEEecCCCCCccccccceeeEEeeec----------------------------------------------------
Q 001479 664 WSKVKCLRCSHESERYENIMDLTLEIYG---------------------------------------------------- 691 (1071)
Q Consensus 664 ~s~ikC~~Cg~~S~~~E~f~~LsL~I~~---------------------------------------------------- 691 (1071)
++.+.|..|+.++.+++||++|+||+|-
T Consensus 423 KSTL~Cp~C~~vsitfDPfmdlTLPLPvs~vw~htiv~fp~~g~~~pl~iel~~sSt~~~lk~lv~~~~gk~gc~ei~v~ 502 (823)
T COG5560 423 KSTLTCPGCGSVSITFDPFMDLTLPLPVSMVWKHTIVVFPESGRRQPLKIELDASSTIRGLKKLVDAEYGKLGCFEIKVM 502 (823)
T ss_pred hceeeccCcCceeeeecchhhccccCchhhcccccEEEECCCCCCCceEEEEeccchHHHHHHHHHHHhccCCccceeEE
Confidence 9999999999999999999999999861
Q ss_pred --------------------------------------------------------------------------------
Q 001479 692 -------------------------------------------------------------------------------- 691 (1071)
Q Consensus 692 -------------------------------------------------------------------------------- 691 (1071)
T Consensus 503 ~iy~g~~y~~l~~~dk~ll~~I~~~d~vylYe~~~ngi~vpvvh~~~~~gYks~rlFg~pflqlnv~~~~~i~~kLvkE~ 582 (823)
T COG5560 503 CIYYGGNYNMLEPADKVLLQDIPQTDFVYLYETNDNGIEVPVVHLRIEKGYKSKRLFGDPFLQLNVLIKASIYDKLVKEF 582 (823)
T ss_pred EEEeccchhhcchhhHHHHhhcCccceEEEeecCCCCeEEEEEeccccccccchhhhCCcceEEEeecchhhHHHHHHHH
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 001479 692 -------------------------------------------------------------------------------- 691 (1071)
Q Consensus 692 -------------------------------------------------------------------------------- 691 (1071)
T Consensus 583 ~ell~~v~~k~tdvd~~~~q~~l~r~es~p~~wl~l~teid~kree~veeE~~~n~nd~vvi~cew~ek~y~~lFsy~~l 662 (823)
T COG5560 583 EELLVLVEMKKTDVDLVSEQVRLLREESSPSSWLKLETEIDTKREEQVEEEGQMNFNDAVVISCEWEEKRYLSLFSYDPL 662 (823)
T ss_pred HHHHHHHhhcchhhhhhhhhccchhcccCcchhhhhhhhccchhhhhhhhhhccCCCcceEEeeeccccchhhhhcCCcc
Confidence
Q ss_pred ----------ccccHHHHHHhcCCCCcCCCCCccccccccccceeeEEEEEeecCceEEEEEeeecccc--cccccceEe
Q 001479 692 ----------WVESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQEGR--YGKINKCIT 759 (1071)
Q Consensus 692 ----------~~~sLee~L~~f~~~E~LdGdnky~C~~Ck~k~~A~K~~~I~klP~ILiIqLkRF~~~~--~~KI~~~V~ 759 (1071)
...+|++||+.|.++|.+.-.+.|+|+.|+....|+|++.|+++|+||+||||||+..+ ..||++-|+
T Consensus 663 w~~~ei~~~~rtiTL~dCl~eFskpEqLgl~DswyCpgCkefrqasKqmelwrlP~iLiihLkRFss~rsfrdKiddlVe 742 (823)
T COG5560 663 WTIREIGAAERTITLQDCLNEFSKPEQLGLSDSWYCPGCKEFRQASKQMELWRLPMILIIHLKRFSSVRSFRDKIDDLVE 742 (823)
T ss_pred chhHHhhhccCCCcHHHHHHHhccHhhcCCcccccCCchHhhhhhhhhhhhhcCChheeeehhhhhhcccchhhhhhhhc
Confidence 01289999999999999999999999999999999999999999999999999998543 369999999
Q ss_pred cC-ccCCCCCccCCCCCCCCceeEEEEEEEecCCCCCCCceEEEEEECC-CCCEEEEcCCeeeeecCCcccCCccEEEEE
Q 001479 760 FP-EMLDMMPFMTGTGDTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDM-QGTWFRIDDTQVHPVPMSQVMSEGAYMLFY 837 (1071)
Q Consensus 760 FP-e~LDL~~y~~~~~~~~~~YeL~gVIvH~G~~~S~~sGHYvayVK~~-dg~Wy~FNDs~Vt~vs~eeVls~~AYILfY 837 (1071)
|| +.|||+.+...-.+..-.|.|+||=.|+|.++ +|||+||+|+. +++||+|||++|+++.+++.....||+|||
T Consensus 743 yPiddldLs~~~~~~~~p~liydlyavDNHyggls---gGHYtAyarn~~n~~wy~fdDsritevdped~vtssaYvLFy 819 (823)
T COG5560 743 YPIDDLDLSGVEYMVDDPRLIYDLYAVDNHYGGLS---GGHYTAYARNFANNGWYLFDDSRITEVDPEDSVTSSAYVLFY 819 (823)
T ss_pred cccccccccceEEeecCcceEEEeeeccccccccC---CcceeeeeecccCCceEEecCccccccCccccccceeEEEEE
Confidence 99 79999988775555558999999999999765 89999999986 569999999999999999999999999999
Q ss_pred EEcC
Q 001479 838 MRSC 841 (1071)
Q Consensus 838 ~R~s 841 (1071)
+|++
T Consensus 820 rrk~ 823 (823)
T COG5560 820 RRKS 823 (823)
T ss_pred EecC
Confidence 9974
No 15
>cd02662 Peptidase_C19F A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=5.4e-46 Score=402.38 Aligned_cols=210 Identities=41% Similarity=0.679 Sum_probs=190.1
Q ss_pred ccccCCCcccHHHHHHHHHcCHHHHHHHHhcccCcccCCCchhHHHHHHHHHHHHHhCCCCCChHHHHHHHHhcccccCC
Q 001479 535 GLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESAGPLSPGRILSHMRSISCQIGD 614 (1071)
Q Consensus 535 GL~NlGNTCYmNSVLQ~L~sip~Fr~~Ll~~~~~~~~~~~~~~ll~qL~kLf~~L~ss~~~isP~~fl~~L~k~~~~F~~ 614 (1071)
||.|+||||||||+||+|+++|+|++++....
T Consensus 1 Gl~N~g~tCy~ns~lQ~L~~~~~f~~~~~~~~------------------------------------------------ 32 (240)
T cd02662 1 GLVNLGNTCFMNSVLQALASLPSLIEYLEEFL------------------------------------------------ 32 (240)
T ss_pred CCcCCCCccHHHHHHHHHHCCHHHHHHHHHHH------------------------------------------------
Confidence 89999999999999999999999999886521
Q ss_pred CCcCcHHHHHHHHHHHHHHHHhhhcCCCCCCCCccccccccccccceEEEeEEEecCCCCCcc-ccccceeeEEeeecc-
Q 001479 615 GSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESE-RYENIMDLTLEIYGW- 692 (1071)
Q Consensus 615 g~QQDA~EFL~~LLd~Le~e~~~~~~~e~k~~~~~~~~siI~~lF~g~l~s~ikC~~Cg~~S~-~~E~f~~LsL~I~~~- 692 (1071)
+||||+|||..||+.|+. .+.++|.|++.+.++|..|++.+. +.|+|+.|+|+|+..
T Consensus 33 -~QqDa~EFl~~ll~~l~~--------------------~i~~~F~g~~~~~i~C~~C~~~s~~~~e~f~~LsL~ip~~~ 91 (240)
T cd02662 33 -EQQDAHELFQVLLETLEQ--------------------LLKFPFDGLLASRIVCLQCGESSKVRYESFTMLSLPVPNQS 91 (240)
T ss_pred -hhcCHHHHHHHHHHHHHH--------------------hccCccccEEEEEEEeCCCCCccCcceeeeeeeEecccccC
Confidence 899999999999999983 366899999999999999999866 599999999999975
Q ss_pred ---cccHHHHHHhcCCCCcCCCCCccccccccccceeeEEEEEeecCceEEEEEeeecccc---cccccceEecCccCCC
Q 001479 693 ---VESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQEGR---YGKINKCITFPEMLDM 766 (1071)
Q Consensus 693 ---~~sLee~L~~f~~~E~LdGdnky~C~~Ck~k~~A~K~~~I~klP~ILiIqLkRF~~~~---~~KI~~~V~FPe~LDL 766 (1071)
..+|++||+.|+.+|.+++ |.|++| +..|.++|++|+|||+||..+. ..|++..|.||+.|
T Consensus 92 ~~~~~sl~~~L~~~~~~E~l~~---~~C~~C--------~~~i~~lP~vLii~LkRF~~~~~~~~~K~~~~v~fp~~l-- 158 (240)
T cd02662 92 SGSGTTLEHCLDDFLSTEIIDD---YKCDRC--------QTVIVRLPQILCIHLSRSVFDGRGTSTKNSCKVSFPERL-- 158 (240)
T ss_pred CCCCCCHHHHHHHhcCcccccC---cCCCCC--------eEEeecCCcEEEEEEEEEEEcCCCceeeeccEEECCCcc--
Confidence 4699999999999999997 999999 5679999999999999997543 46999999999988
Q ss_pred CCccCCCCCCCCceeEEEEEEEecCCCCCCCceEEEEEECC---------------------CCCEEEEcCCeeeeecCC
Q 001479 767 MPFMTGTGDTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDM---------------------QGTWFRIDDTQVHPVPMS 825 (1071)
Q Consensus 767 ~~y~~~~~~~~~~YeL~gVIvH~G~~~S~~sGHYvayVK~~---------------------dg~Wy~FNDs~Vt~vs~e 825 (1071)
....|+|+|||+|.|.. ++|||+||+|.. .++||+|||+.|++++.+
T Consensus 159 ---------~~~~Y~L~avi~H~G~~---~~GHY~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~W~~fnD~~V~~v~~~ 226 (240)
T cd02662 159 ---------PKVLYRLRAVVVHYGSH---SSGHYVCYRRKPLFSKDKEPGSFVRMREGPSSTSHPWWRISDTTVKEVSES 226 (240)
T ss_pred ---------CCceEEEEEEEEEeccC---CCceEEEEEeCCCcccccccccccccccccCccCCCEEEEechheEEeCHH
Confidence 35789999999999973 699999999984 389999999999999999
Q ss_pred cc-cCCccEEEEEE
Q 001479 826 QV-MSEGAYMLFYM 838 (1071)
Q Consensus 826 eV-ls~~AYILfY~ 838 (1071)
+| ....||||||+
T Consensus 227 ~v~~~~~aY~LfYe 240 (240)
T cd02662 227 EVLEQKSAYMLFYE 240 (240)
T ss_pred HHhhCCCEEEEEeC
Confidence 99 88899999995
No 16
>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.3e-46 Score=396.54 Aligned_cols=307 Identities=26% Similarity=0.409 Sum_probs=236.8
Q ss_pred CCcCCcccccCCCcccHHHHHHHHHcCHHHHHHHHh-----cccCcccCC-CchhHHHHHHHHHHHH-HhCCCCCChHHH
Q 001479 529 DLLSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLR-----RSHSSACCG-KDWCLMCELEQHVMML-RESAGPLSPGRI 601 (1071)
Q Consensus 529 ~~~gp~GL~NlGNTCYmNSVLQ~L~sip~Fr~~Ll~-----~~~~~~~~~-~~~~ll~qL~kLf~~L-~ss~~~isP~~f 601 (1071)
....|.||.|+|||||||++||||+.+..+...++. ......... +......+|..|...+ ......|+|..|
T Consensus 67 dn~~p~GL~N~GNtCymNc~lQCl~~~~dL~~M~~~~~ylq~INtd~prg~~g~~~~k~F~~l~~~~~~Hg~~sis~~nF 146 (415)
T COG5533 67 DNLPPNGLRNKGNTCYMNCALQCLLSIGDLNTMLQGRFYLQNINTDFPRGKPGSNAFKQFIALYETPGCHGPKSISPRNF 146 (415)
T ss_pred cccCCccccccCceehHHHHHHHHHhhhHHHHHhhhhhhhhhccCCCCCCCcchhHHHHHHHHHhccccCCCcccchHHH
Confidence 346789999999999999999999999999884433 222222222 3334555555555543 346678999999
Q ss_pred HHHHHhcccccCCCCcCcHHHHHHHHHHHHHHHHhhhcCCCCCCCC-------------------------ccccccccc
Q 001479 602 LSHMRSISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDP-------------------------RLQETTFIQ 656 (1071)
Q Consensus 602 l~~L~k~~~~F~~g~QQDA~EFL~~LLd~Le~e~~~~~~~e~k~~~-------------------------~~~~~siI~ 656 (1071)
+..++..++.|+...|||+|||+.++||.||+++....... ...+ ...+.++|.
T Consensus 147 ~~i~~~~n~~fs~dmQqD~qEFl~fflD~LHedln~N~Srs-~i~~l~de~e~~Reel~l~~~S~~EWn~~L~sn~S~v~ 225 (415)
T COG5533 147 IDILSGRNKLFSGDMQQDSQEFLIFFLDLLHEDLNGNKSRS-PILELKDEFEEVREELPLSHFSHHEWNLHLRSNKSLVA 225 (415)
T ss_pred HHHHccccccccccchhhHHHHHHHHHHHHHhhhcCCcccc-cccccchHHHHHHhhcCcchhhhhhhHHhhccchHHHH
Confidence 99999999999999999999999999999999864321110 0000 012458899
Q ss_pred cccceEEEeEEEecCCCCCccccccceeeEEeeecc-cccHHHHHHhcCCCCcCCCCCccccccccccceeeEEEEEeec
Q 001479 657 HTFGGRLWSKVKCLRCSHESERYENIMDLTLEIYGW-VESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEA 735 (1071)
Q Consensus 657 ~lF~g~l~s~ikC~~Cg~~S~~~E~f~~LsL~I~~~-~~sLee~L~~f~~~E~LdGdnky~C~~Ck~k~~A~K~~~I~kl 735 (1071)
+.|.|+..++++|..|++.+.++..|..|.+|++.- ...|+|||..|.++|.++|++.|.|++|+++..++|++.|..+
T Consensus 226 ~~f~gq~~srlqC~~C~~TStT~a~fs~l~vp~~~v~~~~l~eC~~~f~~~e~L~g~d~W~CpkC~~k~ss~K~~~I~~l 305 (415)
T COG5533 226 KTFFGQDKSRLQCEACNYTSTTIAMFSTLLVPPYEVVQLGLQECIDRFYEEEKLEGKDAWRCPKCGRKESSRKRMEILVL 305 (415)
T ss_pred HHHhhhhhhhhhhhhcCCceeEEeccceeeeccchheeecHHHHHHHhhhHHhhcCcccccCchhcccccchheEEEEec
Confidence 999999999999999999999999999999999852 2469999999999999999999999999999999999999999
Q ss_pred CceEEEEEeeeccc--ccccccceE----ecCccCCCC-CccCCCCCCCCceeEEEEEEEecCCCCCCCceEEEEEECCC
Q 001479 736 PNILTIVLKRFQEG--RYGKINKCI----TFPEMLDMM-PFMTGTGDTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDMQ 808 (1071)
Q Consensus 736 P~ILiIqLkRF~~~--~~~KI~~~V----~FPe~LDL~-~y~~~~~~~~~~YeL~gVIvH~G~~~S~~sGHYvayVK~~d 808 (1071)
|++|||||+||... ...||+..- .++.+.... .+-.+.+-.+.+|.|+|||||.|+.+ +|||+++|+. +
T Consensus 306 P~~LII~i~RF~i~V~~~~kiD~p~gw~~~~~~e~~v~~~f~~~~~~~P~~Y~L~gv~Ch~G~L~---gGHY~s~v~~-~ 381 (415)
T COG5533 306 PDVLIIHISRFHISVMGRKKIDTPQGWKNTASVEVNVTLLFNNGIGYIPRKYSLLGVVCHNGTLN---GGHYFSEVKR-S 381 (415)
T ss_pred CceEEEEeeeeeEEeecccccCCCcchhccCCceecccccccCCCCCCccceeEEEEEeecceec---CceeEEeeee-c
Confidence 99999999999621 123443321 122111111 11122334568999999999999765 8999999998 7
Q ss_pred CCEEEEcCCeeeeecCCc-ccCCccEEEEEEEc
Q 001479 809 GTWFRIDDTQVHPVPMSQ-VMSEGAYMLFYMRS 840 (1071)
Q Consensus 809 g~Wy~FNDs~Vt~vs~ee-Vls~~AYILfY~R~ 840 (1071)
+.|+.|||+.|++++-.. .....+|||||+|.
T Consensus 382 ~~W~~~dDs~vr~~~~~t~~~~pSsYilFY~r~ 414 (415)
T COG5533 382 GTWNVYDDSQVRKGSRTTSGSHPSSYILFYTRS 414 (415)
T ss_pred CceEEechhheeeccceecccCCcceEEEEEec
Confidence 999999999999986433 23357999999996
No 17
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-44 Score=403.66 Aligned_cols=374 Identities=21% Similarity=0.331 Sum_probs=301.1
Q ss_pred CCCCcccccCcCccceecccccchhhhcCCCCCchhhhcccccCCCCCCCCcccccccccccCcccccccccchhhhhHh
Q 001479 426 NPMGTKNCKSAKSCTKVVGDQSCLEKERKGPIADESKAARVRDTIPAQGSNVVSKMGIMKMMGLRKSTKLRQDSSELWHD 505 (1071)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~hLshfGI~k~~nl~~~~Kteks~~EL~~d 505 (1071)
||..-|+....+.+-.+ |+|.= .+|-|. +. +.+.-.|+.-||| ||.+..++||++++|+.+
T Consensus 218 Hplavkl~Sls~~~~di---yCY~C-------D~e~R~---~~--n~n~~s~~~~fGi----nIa~~~~~Eksl~~lq~e 278 (749)
T COG5207 218 HPLAVKLPSLSKEDCDI---YCYLC-------DSEIRS---RY--NSNENSVTIDFGI----NIADGKTEEKSLRKLQSE 278 (749)
T ss_pred CceEEEccccccccccE---EEEec-------Cccccc---CC--cccccceeeeecc----chhhccchHHHHHHHHHh
Confidence 77777777776766544 34431 122121 11 1244678889999 999999999999999999
Q ss_pred hhcCceeeccchhhhhhhcccccCCcC-CcccccCCCcccHHHHHHHHHcCHHHHHHH--HhcccCcccCCCchhHHHHH
Q 001479 506 QHRKLKMLFPYEEFLKLFQYEVIDLLS-PRGLLNCGNSCYANAVLQCLTCTKPLVIYL--LRRSHSSACCGKDWCLMCEL 582 (1071)
Q Consensus 506 ~n~~~~~~f~~E~~~~l~~~~~~~~~g-p~GL~NlGNTCYmNSVLQ~L~sip~Fr~~L--l~~~~~~~~~~~~~~ll~qL 582 (1071)
+|.+|+|....+..... ...+ ++ ++||.|+||+||+|||+|.|+....+..-+ +...+...+..+..+|.|||
T Consensus 279 qn~nw~F~~~~~~~~sk---~~~~-ps~~~GliNlGNsCYl~SviqSlv~~~v~~~~~d~l~~~~~~~~~~P~~~l~CQl 354 (749)
T COG5207 279 QNANWEFLEKKRAPESK---GESV-PSPYVGLINLGNSCYLSSVIQSLVGYAVSKEEFDLLQHFEICYMKNPLECLFCQL 354 (749)
T ss_pred hhcCcchhccccCchhh---cccC-CCCccceEecCCeeeHHHHHHHHhccccchhhhhhhccceeeeecCCchhHHHHH
Confidence 99999887665543221 1223 33 799999999999999999999987766544 44445555667899999999
Q ss_pred HHHHHHHHhC-----CCCCChHHHHHHHHhcccccCCCCcCcHHHHHHHHHHHHHHHHhhhcCCCCCCCCcccccccccc
Q 001479 583 EQHVMMLRES-----AGPLSPGRILSHMRSISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQH 657 (1071)
Q Consensus 583 ~kLf~~L~ss-----~~~isP~~fl~~L~k~~~~F~~g~QQDA~EFL~~LLd~Le~e~~~~~~~e~k~~~~~~~~siI~~ 657 (1071)
.+|+..|.+. ...|+|..|+..++..+++|+..+||||+|||.+||+.|.+-... -..+.|.+
T Consensus 355 ~kll~~mk~~p~~~y~ngi~p~~fk~~igq~h~eFg~~~QQDA~EFLlfLL~kirk~~~S------------~~~~~It~ 422 (749)
T COG5207 355 MKLLSKMKETPDNEYVNGISPLDFKMLIGQDHPEFGKFAQQDAHEFLLFLLEKIRKGERS------------YLIPPITS 422 (749)
T ss_pred HHHHhhccCCCCccccCCcChhhHHHHHcCCchhhhhhhhhhHHHHHHHHHHHHhhccch------------hcCCCcch
Confidence 9999998753 468999999999999999999999999999999999999762211 12356889
Q ss_pred ccceEEEeEEEecCCCCCccccccceeeEEeeecc--cccHHHHHHhcCCCCcCCCCCccccccccccceeeEEEEEeec
Q 001479 658 TFGGRLWSKVKCLRCSHESERYENIMDLTLEIYGW--VESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEA 735 (1071)
Q Consensus 658 lF~g~l~s~ikC~~Cg~~S~~~E~f~~LsL~I~~~--~~sLee~L~~f~~~E~LdGdnky~C~~Ck~k~~A~K~~~I~kl 735 (1071)
+|.+.++.++.|..|+.+++.+++...+.++..+. ..++.++|+.|+.+++++ |.|.+|+.+..|.++..|++|
T Consensus 423 lf~Fe~e~rlsC~~C~~v~ySye~~~~i~i~le~n~E~~di~~~v~a~f~pdtiE----~~CenCk~K~~a~~k~~~ksl 498 (749)
T COG5207 423 LFEFEVERRLSCSGCMDVSYSYESMLMICIFLEGNDEPQDIRKSVEAFFLPDTIE----WSCENCKGKKKASRKPFIKSL 498 (749)
T ss_pred hhhhhhcceecccccccccccccceEEEEeecccCcchhhHHHHHHheECcccee----eehhhhcCcccccccchhhcc
Confidence 99999999999999999999999999888887653 568999999999999999 999999999999999999999
Q ss_pred CceEEEEEeeeccccc--ccccceEecC--ccCCCCCccCCCC-------------------------------------
Q 001479 736 PNILTIVLKRFQEGRY--GKINKCITFP--EMLDMMPFMTGTG------------------------------------- 774 (1071)
Q Consensus 736 P~ILiIqLkRF~~~~~--~KI~~~V~FP--e~LDL~~y~~~~~------------------------------------- 774 (1071)
|++||+|..||...++ .|+..++.+. ..++++.||+...
T Consensus 499 Pk~LIlq~~R~~lqny~v~kls~pi~~~~D~m~~~~s~msk~~PqtEn~LPdedE~~t~Nqs~I~qL~~mGfp~~~~~rA 578 (749)
T COG5207 499 PKYLILQVGRYSLQNYKVEKLSDPIEMRSDDMIKLGSFMSKFDPQTENLLPDEDEAFTDNQSLIRQLVDMGFPEEDAARA 578 (749)
T ss_pred CceeEEecceeeccceeehhccCceEEccccccchhhHhhccCCcccccCCccccccCchHHHHHHHHHcCCCHHHHHHH
Confidence 9999999999987665 5777776665 4677776655200
Q ss_pred --------------------------------------------------------------------------------
Q 001479 775 -------------------------------------------------------------------------------- 774 (1071)
Q Consensus 775 -------------------------------------------------------------------------------- 774 (1071)
T Consensus 579 L~~tgNqDaEsAMNWLFqHMdDPdlndP~~~~~~vPKkDkeVdE~~~~Slle~Gln~n~~Rkal~~~n~d~~r~V~w~~N 658 (749)
T COG5207 579 LGITGNQDAESAMNWLFQHMDDPDLNDPFVPPPNVPKKDKEVDESKARSLLENGLNPNLCRKALMDMNTDSKRRVVWCIN 658 (749)
T ss_pred HhhccCcchHHHHHHHHhhccCcccCCCCCCCCCCCcccccccHHHHHHHHHcCCCHHHHHHHHHHccCCchheEEEEEe
Confidence
Q ss_pred ------------------------CCCCceeEEEEEEEecCCCCCCCceEEEEEECC---CCCEEEEcCCeeeeecCCcc
Q 001479 775 ------------------------DTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDM---QGTWFRIDDTQVHPVPMSQV 827 (1071)
Q Consensus 775 ------------------------~~~~~YeL~gVIvH~G~~~S~~sGHYvayVK~~---dg~Wy~FNDs~Vt~vs~eeV 827 (1071)
.....|.|.|||+|.|+ ++|+||||+|||+. .-+|++|||++|..++.-++
T Consensus 659 ~~D~tF~EP~v~~eeqqqk~~~~~STa~PYaLtAvI~HkG~--s~haGHYv~fIrk~~~~K~kWvl~nDek~v~~~svE~ 736 (749)
T COG5207 659 DDDGTFPEPEVPNEEQQQKKDLGYSTAKPYALTAVICHKGD--SIHAGHYVWFIRKNGKDKWKWVLKNDEKTVLNSSVEV 736 (749)
T ss_pred CCCCCCCCCCCCchhhhhcccccccccCcccceeEEeccCC--cccccceEEEEecccCcceeEEEEccchheehhhHHH
Confidence 01235999999999999 99999999999973 33699999999988877788
Q ss_pred cCCccEEEEEEEc
Q 001479 828 MSEGAYMLFYMRS 840 (1071)
Q Consensus 828 ls~~AYILfY~R~ 840 (1071)
++.++|||||+|.
T Consensus 737 ~k~nGYiylf~R~ 749 (749)
T COG5207 737 LKDNGYIYLFKRC 749 (749)
T ss_pred HhhCCeEEEEecC
Confidence 8999999999984
No 18
>cd02674 Peptidase_C19R A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=7.7e-44 Score=379.59 Aligned_cols=220 Identities=40% Similarity=0.730 Sum_probs=200.9
Q ss_pred ccccCCCcccHHHHHHHHHcCHHHHHHHHhcccCcccCCCchhHHHHHHHHHHHHHhCCCCCChHHHHHHHHhcccccCC
Q 001479 535 GLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESAGPLSPGRILSHMRSISCQIGD 614 (1071)
Q Consensus 535 GL~NlGNTCYmNSVLQ~L~sip~Fr~~Ll~~~~~~~~~~~~~~ll~qL~kLf~~L~ss~~~isP~~fl~~L~k~~~~F~~ 614 (1071)
||.|.||+|||||+||+|++
T Consensus 1 gl~n~~~~cy~n~~~Q~l~~------------------------------------------------------------ 20 (230)
T cd02674 1 GLRNLGNTCYMNSILQCLSA------------------------------------------------------------ 20 (230)
T ss_pred CccccCcchhhhHHHHHHHH------------------------------------------------------------
Confidence 89999999999999999987
Q ss_pred CCcCcHHHHHHHHHHHHHHHHhhhcCCCCCCCCccccccccccccceEEEeEEEecCCCCCccccccceeeEEeeecc--
Q 001479 615 GSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEIYGW-- 692 (1071)
Q Consensus 615 g~QQDA~EFL~~LLd~Le~e~~~~~~~e~k~~~~~~~~siI~~lF~g~l~s~ikC~~Cg~~S~~~E~f~~LsL~I~~~-- 692 (1071)
.||||+||+++||+.|+ ++|.++|+|.+..+++|..|+..+.+.++|+.|+|+++..
T Consensus 21 -~QqDa~Ef~~~ll~~l~--------------------~~i~~~F~~~~~~~~~C~~C~~~~~~~e~~~~l~l~ip~~~~ 79 (230)
T cd02674 21 -DQQDAQEFLLFLLDGLH--------------------SIIVDLFQGQLKSRLTCLTCGKTSTTFEPFTYLSLPIPSGSG 79 (230)
T ss_pred -hhhhHHHHHHHHHHHHh--------------------hhHHheeCCEEeCcEEcCCCcCCcceecceeEEEEecccccC
Confidence 89999999999999997 2578999999999999999999999999999999999864
Q ss_pred ---cccHHHHHHhcCCCCcCCCCCccccccccccceeeEEEEEeecCceEEEEEeeeccc--ccccccceEecC-ccCCC
Q 001479 693 ---VESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQEG--RYGKINKCITFP-EMLDM 766 (1071)
Q Consensus 693 ---~~sLee~L~~f~~~E~LdGdnky~C~~Ck~k~~A~K~~~I~klP~ILiIqLkRF~~~--~~~KI~~~V~FP-e~LDL 766 (1071)
..+|+++|+.|+.+|.++|.+++.|++|++++.+.++..|.++|++|+|||+||... ...|++..|.|| +.|||
T Consensus 80 ~~~~~sl~~~L~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~iLii~l~R~~~~~~~~~K~~~~v~~~~~~l~l 159 (230)
T cd02674 80 DAPKVTLEDCLRLFTKEETLDGDNAWKCPKCKKKRKATKKLTISRLPKVLIIHLKRFSFSRGSTRKLTTPVTFPLNDLDL 159 (230)
T ss_pred CCCCCCHHHHHHHhcCccccCCCCceeCCCCCCccceEEEEEEecCChhhEeEhhheecCCCCcccCCceEecccccccc
Confidence 359999999999999999999999999999999999999999999999999999865 357999999999 57999
Q ss_pred CCccC-CCCCCCCceeEEEEEEEecCCCCCCCceEEEEEECCC-CCEEEEcCCeeeeecCCcccCCccEEEEEE
Q 001479 767 MPFMT-GTGDTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDMQ-GTWFRIDDTQVHPVPMSQVMSEGAYMLFYM 838 (1071)
Q Consensus 767 ~~y~~-~~~~~~~~YeL~gVIvH~G~~~S~~sGHYvayVK~~d-g~Wy~FNDs~Vt~vs~eeVls~~AYILfY~ 838 (1071)
.+|+. .......+|+|+|||+|.|.. .+|||+||+|..+ ++|++|||+.|++++.+++....||||||+
T Consensus 160 ~~~~~~~~~~~~~~Y~L~~vI~H~G~~---~~GHY~~~~~~~~~~~W~~fnD~~V~~i~~~~~~~~~~YlL~Y~ 230 (230)
T cd02674 160 TPYVDTRSFTGPFKYDLYAVVNHYGSL---NGGHYTAYCKNNETNDWYKFDDSRVTKVSESSVVSSSAYILFYE 230 (230)
T ss_pred ccccCcccCCCCceEEEEEEEEeeCCC---CCcEEEEEEECCCCCceEEEcCCeEEEcCHHHccCCCceEEEeC
Confidence 98853 233456799999999999973 5899999999854 899999999999999999988899999996
No 19
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-44 Score=416.78 Aligned_cols=348 Identities=24% Similarity=0.416 Sum_probs=279.3
Q ss_pred CCcccccccccccCcccccccccchhhhhHhhhcCc----eeeccchh--hhhhhcccccCCcCCcccccCCCcccHHHH
Q 001479 475 SNVVSKMGIMKMMGLRKSTKLRQDSSELWHDQHRKL----KMLFPYEE--FLKLFQYEVIDLLSPRGLLNCGNSCYANAV 548 (1071)
Q Consensus 475 ~~hLshfGI~k~~nl~~~~Kteks~~EL~~d~n~~~----~~~f~~E~--~~~l~~~~~~~~~gp~GL~NlGNTCYmNSV 548 (1071)
+...+-||..++.+|.+..-..+.......+....+ +++..+-+ +....+++.....|++||+|+|.||||||+
T Consensus 129 s~~~tDwGFt~f~dL~kl~~psp~~Ppfleeg~l~ItvyVRvlkdPTGVLWHsF~nYnSKkeTGYVGlrNqGATCYmNSL 208 (1089)
T COG5077 129 SMESTDWGFTNFIDLNKLIEPSPGRPPFLEEGTLVITVYVRVLKDPTGVLWHSFLNYNSKKETGYVGLRNQGATCYMNSL 208 (1089)
T ss_pred cccccccchhhhhhhhhhcCCCCCCCCcccCCeEEEEEEEEEEeCCccceeecccccccccceeeeeeccCCceeeHHHH
Confidence 445567999888888887665343333332221112 22222111 122223333344899999999999999999
Q ss_pred HHHHHcCHHHHHHHHhcccCcccCCCchhHHHHHHHHHHHHHhCCCCCChHHHHHHHHhcccccCCCCcCcHHHHHHHHH
Q 001479 549 LQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESAGPLSPGRILSHMRSISCQIGDGSQEDAHEFLRLLV 628 (1071)
Q Consensus 549 LQ~L~sip~Fr~~Ll~~~~~~~~~~~~~~ll~qL~kLf~~L~ss~~~isP~~fl~~L~k~~~~F~~g~QQDA~EFL~~LL 628 (1071)
||.||.+..||+.+...... .......+..+||++|..|+....+++..+|...++ ...+....|+|.|||-+.|.
T Consensus 209 lQslffi~~FRk~Vy~ipTd--~p~grdSValaLQr~Fynlq~~~~PvdTteltrsfg--Wds~dsf~QHDiqEfnrVl~ 284 (1089)
T COG5077 209 LQSLFFIAKFRKDVYGIPTD--HPRGRDSVALALQRLFYNLQTGEEPVDTTELTRSFG--WDSDDSFMQHDIQEFNRVLQ 284 (1089)
T ss_pred HHHHHHHHHHHHHhhcCCCC--CCCccchHHHHHHHHHHHHhccCCCcchHHhhhhcC--cccchHHHHHhHHHHHHHHH
Confidence 99999999999988764322 123455688999999999999999999999887653 33456679999999999999
Q ss_pred HHHHHHHhhhcCCCCCCCCccccccccccccceEEEeEEEecCCCCCccccccceeeEEeeecccccHHHHHHhcCCCCc
Q 001479 629 ASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEIYGWVESLEDALTQFTSPED 708 (1071)
Q Consensus 629 d~Le~e~~~~~~~e~k~~~~~~~~siI~~lF~g~l~s~ikC~~Cg~~S~~~E~f~~LsL~I~~~~~sLee~L~~f~~~E~ 708 (1071)
|.|++.. .+. .-.+.++.+|-|++.+.++|.+-.+++.+.|.|++++|++++ ..+|++.++.|...|+
T Consensus 285 DnLEksm----rgt-------~VEnaln~ifVgkmksyikCvnvnyEsarvedfwdiqlNvK~-~knLqeSfr~yIqvE~ 352 (1089)
T COG5077 285 DNLEKSM----RGT-------VVENALNGIFVGKMKSYIKCVNVNYESARVEDFWDIQLNVKG-MKNLQESFRRYIQVET 352 (1089)
T ss_pred HHHHHhh----cCC-------hhhhHHhHHHHHHhhceeeEEEechhhhhHHHHHHHHhcccc-hhhHHHHHHHhhhhee
Confidence 9999743 111 123468899999999999999999999999999999999998 7999999999999999
Q ss_pred CCCCCccccccccccceeeEEEEEeecCceEEEEEeeecc----cccccccceEecCccCCCCCccCCCC----CCCCce
Q 001479 709 LDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQE----GRYGKINKCITFPEMLDMMPFMTGTG----DTPPLY 780 (1071)
Q Consensus 709 LdGdnky~C~~Ck~k~~A~K~~~I~klP~ILiIqLkRF~~----~~~~KI~~~V~FPe~LDL~~y~~~~~----~~~~~Y 780 (1071)
++|+|+|.|+. ...+.|.|...|.+||+||.+|||||.+ +...||+++.+||+++||.||++.+. +..+.|
T Consensus 353 l~GdN~Y~ae~-~GlqdAkKGViFeSlPpVlhlqLKRFeyDfe~d~mvKINDryEFP~eiDl~pfld~da~ksen~d~vY 431 (1089)
T COG5077 353 LDGDNRYNAEK-HGLQDAKKGVIFESLPPVLHLQLKRFEYDFERDMMVKINDRYEFPLEIDLLPFLDRDADKSENSDAVY 431 (1089)
T ss_pred ccCCccccccc-ccchhhccceeeccCchHHHHHHHHhccccccCceeeecccccCcchhccccccCchhhhhcccCcEE
Confidence 99999999988 4578999999999999999999999964 45579999999999999999998643 234899
Q ss_pred eEEEEEEEecCCCCCCCceEEEEEEC-CCCCEEEEcCCeeeeecCCcccCC----------------------ccEEEEE
Q 001479 781 MLYSVVVHLDTQNASFSGHYVSYIKD-MQGTWFRIDDTQVHPVPMSQVMSE----------------------GAYMLFY 837 (1071)
Q Consensus 781 eL~gVIvH~G~~~S~~sGHYvayVK~-~dg~Wy~FNDs~Vt~vs~eeVls~----------------------~AYILfY 837 (1071)
.|+||++|.|. .+.|||+|++|. .+|+||+|||++|+.++..+|+.+ +||||+|
T Consensus 432 ~LygVlVHsGD---l~~GHyYallKpe~dg~WykfdDtrVtrat~kevleeNfGgd~~~~~k~r~~~~~kRfmsAYmLvY 508 (1089)
T COG5077 432 VLYGVLVHSGD---LHEGHYYALLKPEKDGRWYKFDDTRVTRATEKEVLEENFGGDHPYKDKIRDHSGIKRFMSAYMLVY 508 (1089)
T ss_pred EEEEEEEeccc---cCCceEEEEeccccCCCceeecceehhhHHHHHHHHHhcCCCCCCcccccCCchhhhhhhhheeee
Confidence 99999999995 458999999994 289999999999999998887641 5899999
Q ss_pred EEcCC
Q 001479 838 MRSCP 842 (1071)
Q Consensus 838 ~R~s~ 842 (1071)
-|++.
T Consensus 509 lRks~ 513 (1089)
T COG5077 509 LRKSM 513 (1089)
T ss_pred ehHhH
Confidence 99875
No 20
>KOG1866 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-43 Score=409.49 Aligned_cols=313 Identities=30% Similarity=0.437 Sum_probs=266.1
Q ss_pred cCCcccccCCCcccHHHHHHHHHcCHHHHHHHHhcccCcc-cC-CCchhHHHHHHHHHHHHHhCC-CCCChHHHHHHHHh
Q 001479 531 LSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSA-CC-GKDWCLMCELEQHVMMLRESA-GPLSPGRILSHMRS 607 (1071)
Q Consensus 531 ~gp~GL~NlGNTCYmNSVLQ~L~sip~Fr~~Ll~~~~~~~-~~-~~~~~ll~qL~kLf~~L~ss~-~~isP~~fl~~L~k 607 (1071)
.+.+||+|-|+|||||+++|-|.++|.++.-++...+... .. .-...++++++.+|..|..++ ..+-|..|.+.++-
T Consensus 93 ~gfVGLKNagatcyMNav~QQlymIP~Lrh~ll~~~~~td~pd~s~~e~vl~~lQ~iF~hL~~s~lQyyVPeg~Wk~Fr~ 172 (944)
T KOG1866|consen 93 EGFVGLKNAGATCYMNAVIQQLYMIPGLRHLLLAFVGTTDLPDMSGDEKVLRHLQVIFGHLAASQLQYYVPEGFWKQFRL 172 (944)
T ss_pred cceeeecCCCchHHHhhhhhhhhhcccccchhhhhcccccchhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHhhc
Confidence 5679999999999999999999999999987765444411 11 112339999999999987544 67899999999998
Q ss_pred cccccCCCCcCcHHHHHHHHHHHHHHHHhhhcCCCCCCCCccccccccccccceEEEeEEEecCCCCCccccccceeeEE
Q 001479 608 ISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTL 687 (1071)
Q Consensus 608 ~~~~F~~g~QQDA~EFL~~LLd~Le~e~~~~~~~e~k~~~~~~~~siI~~lF~g~l~s~ikC~~Cg~~S~~~E~f~~LsL 687 (1071)
.+...+..+||||.|||..|||.+++.++. ++ ...++++.|+|.+..+-.|..|-+.-...|.|..|+|
T Consensus 173 ~~~pln~reqhDA~eFf~sLld~~De~LKk-lg----------~p~lf~n~f~G~ysdqKIC~~CpHRY~~eE~F~~l~l 241 (944)
T KOG1866|consen 173 WGEPLNLREQHDALEFFNSLLDSLDEALKK-LG----------HPQLFSNTFGGSYSDQKICQGCPHRYECEESFTTLNL 241 (944)
T ss_pred cCCccchHhhhhHHHHHHHHHHHHHHHHHH-hC----------CcHHHHHHhcCccchhhhhccCCcccCccccceeeee
Confidence 888899999999999999999999987643 22 2246889999999999999999999999999999999
Q ss_pred eeecccccHHHHHHhcCCCCcCCCCCccccccccccceeeEEEEEeecCceEEEEEeeeccc----ccccccceEecCcc
Q 001479 688 EIYGWVESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQEG----RYGKINKCITFPEM 763 (1071)
Q Consensus 688 ~I~~~~~sLee~L~~f~~~E~LdGdnky~C~~Ck~k~~A~K~~~I~klP~ILiIqLkRF~~~----~~~KI~~~V~FPe~ 763 (1071)
.|. ..+|+++|++|.+.|+++|.|.|+|++|+++....|++.|+++|.+|+||||||.++ ...|.++.++||.+
T Consensus 242 ~i~--~~nLeesLeqfv~gevlEG~nAYhCeKCdeK~~TvkRt~ik~LPsvl~IqLkRF~yD~e~~~~iK~n~~frFP~~ 319 (944)
T KOG1866|consen 242 DIR--HQNLEESLEQFVKGEVLEGANAYHCEKCDEKVDTVKRTCIKKLPSVLAIQLKRFDYDWERECAIKFNDYFRFPRE 319 (944)
T ss_pred ecc--cchHHHHHHHHHHHHHhcCcchhhhhhhhhhhHhHHHHHHhhCChhheehhhhccchhhhccccccchhcccchh
Confidence 999 489999999999999999999999999999999999999999999999999999764 23699999999999
Q ss_pred CCCCCccCCC-----------------CCCCCceeEEEEEEEecCCCCCCCceEEEEEECC----CCCEEEEcCCeeeee
Q 001479 764 LDMMPFMTGT-----------------GDTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDM----QGTWFRIDDTQVHPV 822 (1071)
Q Consensus 764 LDL~~y~~~~-----------------~~~~~~YeL~gVIvH~G~~~S~~sGHYvayVK~~----dg~Wy~FNDs~Vt~v 822 (1071)
|||.||+..+ ..++.+|+|+|||+|.|. ++.|||++||+.. .++||+|||..|++.
T Consensus 320 ldMePYtvsg~a~~e~~~~~~g~~~e~s~~t~~YeLvGVlvHSGq---AsaGHYySfIk~rr~~~~~kWykfnD~~Vte~ 396 (944)
T KOG1866|consen 320 LDMEPYTVSGVAKLEGENVESGQQLEQSAGTTKYELVGVLVHSGQ---ASAGHYYSFIKQRRGEDGNKWYKFNDGDVTEC 396 (944)
T ss_pred hcCCceeehhhhhhccccCCcCcccccccCcceeEEEEEEEeccc---ccCcchhhhhhhhccCCCCceEeccCcccccc
Confidence 9999997522 135679999999999996 4589999999852 579999999999999
Q ss_pred cCCcccC--------------------CccEEEEEEEcCCCCCcccchhhhhhcccc
Q 001479 823 PMSQVMS--------------------EGAYMLFYMRSCPRPRRTLSRKAMQQQVPA 859 (1071)
Q Consensus 823 s~eeVls--------------------~~AYILfY~R~s~~~~~~~~~~~~~~~~~~ 859 (1071)
+..++.. -+||||||+|.+..|....+...+...+..
T Consensus 397 ~~n~me~~cfGGey~q~~~~~~~rrR~WNAYmlFYer~~d~p~~~~p~~~~~~l~~~ 453 (944)
T KOG1866|consen 397 KMNEMENECFGGEYMQMMKRMSYRRRWWNAYMLFYERMDDIPTDDEPIREILSLTID 453 (944)
T ss_pred chhhHHHHhhcchhhhcccccchHHHhhhhHHHHHHHhcCCCccccccccccccccC
Confidence 8765432 279999999999998877766655544433
No 21
>KOG1868 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-42 Score=411.75 Aligned_cols=311 Identities=32% Similarity=0.493 Sum_probs=258.8
Q ss_pred cCCcccccCCCcccHHHHHHHHHcCHHHHHHHHhcccCccc----CCCchhHHHHHHHHHHHHHh--CCCCCChHHHHHH
Q 001479 531 LSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSAC----CGKDWCLMCELEQHVMMLRE--SAGPLSPGRILSH 604 (1071)
Q Consensus 531 ~gp~GL~NlGNTCYmNSVLQ~L~sip~Fr~~Ll~~~~~~~~----~~~~~~ll~qL~kLf~~L~s--s~~~isP~~fl~~ 604 (1071)
.+.+||.|+|||||||++||||+.++.|+..++...+.... ......+..++.+++..++. ....+.|..|+..
T Consensus 299 ~~~~GL~NlGntC~mn~ilQCl~~t~~lr~~~L~~~~~~~i~~~~~~~~~~l~~~~~~~l~~~~~~~~~~s~~P~~f~~~ 378 (653)
T KOG1868|consen 299 FGCPGLRNLGNTCFMNSILQCLFSTGELRDNFLSIKLPQFINLDLFFGAEELESACAKLLQKLWHGHGQFSVLPRRFIRV 378 (653)
T ss_pred cCCceeccCCcchHHHHHHHHHhhccccchhhhhHHHHHHcccCCcccchhHHHHHHHhhhhhccCCCceecCcHHHHHH
Confidence 67899999999999999999999999999777665433222 22345667777777776654 4457889999999
Q ss_pred HHhcccccCCCCcCcHHHHHHHHHHHHHHHHhhhcCC---CC----------CCC-----------Cccccccccccccc
Q 001479 605 MRSISCQIGDGSQEDAHEFLRLLVASMQSICLERHGG---ES----------KVD-----------PRLQETTFIQHTFG 660 (1071)
Q Consensus 605 L~k~~~~F~~g~QQDA~EFL~~LLd~Le~e~~~~~~~---e~----------k~~-----------~~~~~~siI~~lF~ 660 (1071)
+.+..+.|.++.|||+|||+.++++.||+++.+.... .. ... ........|.++|.
T Consensus 379 ~~~y~~~~~~~~Qqd~qEfl~~lld~Lhe~ln~~~~~~~~~p~~~~~~~~~~~~~~s~~s~~~w~~~~~~~d~~i~~lf~ 458 (653)
T KOG1868|consen 379 LKRYSPNFSGYSQQDAQEFLIFLLDRLHEELNENTRPLKLSPLMGSYLLSELELSDSKKSLAEWLRYLEEEDSKIGDLFV 458 (653)
T ss_pred HhhcccccccccccchHHHHHHHHHhhhHhhhccCCCCccCccccccccccccccccchhHHHHHhhccccchHHHHHHH
Confidence 9999999999999999999999999999998654210 00 000 00113344899999
Q ss_pred eEEEeEEEecCCCCCccccccceeeEEeeeccc-----ccHHHHHHhcCCCCcCCCCCccccccccccceee--EEEEEe
Q 001479 661 GRLWSKVKCLRCSHESERYENIMDLTLEIYGWV-----ESLEDALTQFTSPEDLDGENMYKCARCATYVRAR--KQLSIH 733 (1071)
Q Consensus 661 g~l~s~ikC~~Cg~~S~~~E~f~~LsL~I~~~~-----~sLee~L~~f~~~E~LdGdnky~C~~Ck~k~~A~--K~~~I~ 733 (1071)
|++++.++|..||+.+.+++.|++|+|+|+... .+|++|+..|+..|.+++++.|.|++|+.+.... |++.|.
T Consensus 459 gQ~ks~Lkc~~cg~~s~t~~~f~~lslpIp~~~~~~~~~~L~~C~~~ft~~ekle~~~~w~Cp~c~~~~~~~~lK~~~i~ 538 (653)
T KOG1868|consen 459 GQLKSYLKCQACGYTSTTFETFTDLSLPIPKKGFAGGKVSLEDCLSLFTKEEKLEGDEAWLCPRCKHKESSKTLKKLTIL 538 (653)
T ss_pred HHHHhheehhhcCCcceeeecceeeEEecccccccccccchHhhhccccchhhcccccccCCccccCcccccccceeeee
Confidence 999999999999999999999999999998532 4599999999999999999999999999999985 999999
Q ss_pred ecCceEEEEEeeeccc--ccccccceEecCc-cCCCCCccCCCCCCCCceeEEEEEEEecCCCCCCCceEEEEEECC-CC
Q 001479 734 EAPNILTIVLKRFQEG--RYGKINKCITFPE-MLDMMPFMTGTGDTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDM-QG 809 (1071)
Q Consensus 734 klP~ILiIqLkRF~~~--~~~KI~~~V~FPe-~LDL~~y~~~~~~~~~~YeL~gVIvH~G~~~S~~sGHYvayVK~~-dg 809 (1071)
++|++|+|||+||... ...|....|+||. .+++.++.....+....|+|+|||+|.|+.+ +|||+||+++. .+
T Consensus 539 ~lp~iLiihL~Rf~~~~~~~~k~~~~v~~~~~~~~~~~~~~~~~~~~~~Y~L~aVv~H~Gtl~---sGHYta~~~~~~~~ 615 (653)
T KOG1868|consen 539 RLPKILIIHLKRFSSDGNSFNKLSTGVDFPLREADLSPRFAEKGNNPKSYRLYAVVNHSGTLN---SGHYTAYVYKNEKQ 615 (653)
T ss_pred cCCHHHHHHHHHhccCcccccccceeeccchHhhhhchhccccCCCccceeeEEEEeccCccc---CCceEEEEeecCCC
Confidence 9999999999999765 4578889999995 6777777776666778899999999999654 89999999764 57
Q ss_pred CEEEEcCCeeeeecCCcccCCccEEEEEEEcCCCC
Q 001479 810 TWFRIDDTQVHPVPMSQVMSEGAYMLFYMRSCPRP 844 (1071)
Q Consensus 810 ~Wy~FNDs~Vt~vs~eeVls~~AYILfY~R~s~~~ 844 (1071)
.|+.|||+.|+.+...++....||||||+|.....
T Consensus 616 ~W~~fdDs~Vs~~~~~~~~~s~aYIlFY~~~~~~~ 650 (653)
T KOG1868|consen 616 RWFTFDDSEVSPISETDVGSSSAYILFYERLGIFE 650 (653)
T ss_pred ceEEecCeeeeccccccccCCCceEEEeecCCccc
Confidence 89999999999998888888899999999987643
No 22
>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C19 (ubiquitin-specific protease family, clan CA). Families within the CA clan are loosely termed papain-like as protein fold of the peptidase unit resembles that of papain, the type example for clan CA. Predicted active site residues for members of this family and family C1 occur in the same order in the sequence: N/Q, C, H. The type example is human ubiquitin-specific protease 14. Ubiquitin is highly conserved, commonly found conjugated to proteins in eukaryotic cells, where it may act as a marker for rapid degradation, or it may have a chaperone function in protein assembly []. The ubiquitin is released by cleavage from the bound protein by a protease []. A number of deubiquitinising proteases are known: all are activated by thiol compounds [, ], and inhibited by thiol-blocking agents and ubiquitin aldehyde [, ], and as such have the properties of cysteine proteases []. The deubiquitinsing proteases can be split into 2 size ranges (20-30 kDa, IPR001578 from INTERPRO, and 100-200 kDa) []: this family are the 100-200 kDa peptides which includes the Ubp1 ubiquitin peptidase from yeast. Only one conserved cysteine can be identified, along with two conserved histidines. The spacing between the cysteine and the second histidine is thought to be more representative of the cysteine/histidine spacing of a cysteine protease catalytic dyad [].; GO: 0004221 ubiquitin thiolesterase activity, 0006511 ubiquitin-dependent protein catabolic process; PDB: 2LBC_A 3MHH_A 3MHS_A 3M99_A 2Y6E_D 2VHF_A 2HD5_A 3NHE_A 2IBI_A 1NBF_B ....
Probab=100.00 E-value=1.6e-41 Score=362.95 Aligned_cols=249 Identities=37% Similarity=0.632 Sum_probs=200.2
Q ss_pred CcccccCCCcccHHHHHHHHHcCHHHHHHHHhcc-----cCcccCCCchhHHHHHHHHHHHHHhC---CCCCChHHHHHH
Q 001479 533 PRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRS-----HSSACCGKDWCLMCELEQHVMMLRES---AGPLSPGRILSH 604 (1071)
Q Consensus 533 p~GL~NlGNTCYmNSVLQ~L~sip~Fr~~Ll~~~-----~~~~~~~~~~~ll~qL~kLf~~L~ss---~~~isP~~fl~~ 604 (1071)
|+||.|.||||||||+||+|+++|+|+++++... ..........+++++|+.|+..|+.. ...+.|..|+..
T Consensus 1 ~~Gl~N~gntCylNs~lQ~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~i~~~~~~~~ 80 (269)
T PF00443_consen 1 PVGLQNIGNTCYLNSVLQCLFHIPPFRNYLLSYNSEKENNESNPSKKIKEFLQQLQNLFRSLWSSNSSDSSISPSDFINA 80 (269)
T ss_dssp --EESBSSSTHHHHHHHHHHHTSHHHHHHHHTTCHHHHHHCSSTTSCTCHHHHHHHHHHHHHHSSCSSSSEEHCHHHHHH
T ss_pred CCCcEeCCCchHHhHHHHhhhhhhhhhhhhhhcccchhhccccccccccchhhhhhhhhhhhhhhcccccceeecccccc
Confidence 6899999999999999999999999999998751 11222344567999999999999965 567999999999
Q ss_pred HHhcccccCCCCcCcHHHHHHHHHHHHHHHHhhhcCCCCCCCCccccccccccccceEEEeEEEecCCCCCcccccccee
Q 001479 605 MRSISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMD 684 (1071)
Q Consensus 605 L~k~~~~F~~g~QQDA~EFL~~LLd~Le~e~~~~~~~e~k~~~~~~~~siI~~lF~g~l~s~ikC~~Cg~~S~~~E~f~~ 684 (1071)
+....+.|..+.||||+|||..||+.|++++.................+++.++|.+++...++|..|+..
T Consensus 81 l~~~~~~~~~~~qqDa~E~l~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~c~~c~~~--------- 151 (269)
T PF00443_consen 81 LSSINPSFSNGEQQDAHEFLSFLLDWLDEEFNSSFKRKSWKNTNSSEDSLISDLFGGQFESSIKCSSCKNS--------- 151 (269)
T ss_dssp HHHHCGGGGSSSTEEHHHHHHHHHHHHHHHHTSCSSHHHHHHHHCCEESHHHHHH-EEEEEEEEETTTTCE---------
T ss_pred ccccccccccccccchhhhhcccccccchhhcccccccccccccccccccccccccccccccccccccccc---------
Confidence 99999999999999999999999999998764421100000111235678899999999999999999886
Q ss_pred eEEeeecccccHHHHHHhcCCCCcCCCCCccccccccccceeeEEEEEeecCceEEEEEeeecc----cccccccceEec
Q 001479 685 LTLEIYGWVESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQE----GRYGKINKCITF 760 (1071)
Q Consensus 685 LsL~I~~~~~sLee~L~~f~~~E~LdGdnky~C~~Ck~k~~A~K~~~I~klP~ILiIqLkRF~~----~~~~KI~~~V~F 760 (1071)
...|.++|++|+|+|+||.+ +...|+...|.|
T Consensus 152 --------------------------------------------~~~~~~~P~~L~i~l~R~~~~~~~~~~~K~~~~v~~ 187 (269)
T PF00443_consen 152 --------------------------------------------QSSISSLPPILIIQLKRFEFDQETGRSKKINNPVEF 187 (269)
T ss_dssp --------------------------------------------EEEEEEBBSEEEEEEE-EEEESTSSEEEE--CEEB-
T ss_pred --------------------------------------------ccccccccceeeeccccceecccccccccccccccc
Confidence 45799999999999999942 235799999999
Q ss_pred C-ccCCCCCccCCCCC---CCCceeEEEEEEEecCCCCCCCceEEEEEECCC-CCEEEEcCCeeeeecCCcccC---Ccc
Q 001479 761 P-EMLDMMPFMTGTGD---TPPLYMLYSVVVHLDTQNASFSGHYVSYIKDMQ-GTWFRIDDTQVHPVPMSQVMS---EGA 832 (1071)
Q Consensus 761 P-e~LDL~~y~~~~~~---~~~~YeL~gVIvH~G~~~S~~sGHYvayVK~~d-g~Wy~FNDs~Vt~vs~eeVls---~~A 832 (1071)
| +.|||.+++..+.. ....|+|+|||+|.|.. .+|||+||||+.+ ++|++|||++|+++++++|.. ..|
T Consensus 188 ~~~~l~l~~~~~~~~~~~~~~~~Y~L~avi~H~G~~---~~GHY~a~v~~~~~~~W~~~dD~~v~~~~~~~v~~~~~~~~ 264 (269)
T PF00443_consen 188 PLEELDLSPYLEKNNSECQSNVKYRLVAVIVHYGSA---DSGHYVAYVRDSDDGKWYKFDDSRVTEVSWEEVIKSSNSTA 264 (269)
T ss_dssp -SSEEEGGGGBSSCCCTHTSSSEEEEEEEEEEESST---TSEEEEEEEEETTTTEEEEEETTEEEEESHHHHCCGGSTCE
T ss_pred Cchhhhhhhhhccccccccccceeeehhhhcccccc---ccceEEEeeccccCCeEEEeeCCceEECCHHHHhhccCCce
Confidence 9 79999999886553 36899999999999953 4899999998754 469999999999999999988 899
Q ss_pred EEEEE
Q 001479 833 YMLFY 837 (1071)
Q Consensus 833 YILfY 837 (1071)
|||||
T Consensus 265 yll~Y 269 (269)
T PF00443_consen 265 YLLFY 269 (269)
T ss_dssp EEEEE
T ss_pred EEEeC
Confidence 99999
No 23
>cd02673 Peptidase_C19Q A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=4.1e-41 Score=365.78 Aligned_cols=238 Identities=25% Similarity=0.425 Sum_probs=191.4
Q ss_pred cccCCCcccHHHHHHHHHcCHHHHHHHHhcccCcccCCCchhHHHHHHHHHHHHHhCCCCCChHHHHHHHHhcccccCCC
Q 001479 536 LLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESAGPLSPGRILSHMRSISCQIGDG 615 (1071)
Q Consensus 536 L~NlGNTCYmNSVLQ~L~sip~Fr~~Ll~~~~~~~~~~~~~~ll~qL~kLf~~L~ss~~~isP~~fl~~L~k~~~~F~~g 615 (1071)
|.|.||+||+||.+|+|.+ +++.+++|.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~--------------------------------------------------i~~~~~~F~~~ 31 (245)
T cd02673 2 LVNTGNSCYFNSTMQALSS--------------------------------------------------IGKINTEFDND 31 (245)
T ss_pred ceecCCeeeehhHHHHHHH--------------------------------------------------HhhhhhhcCCC
Confidence 7899999999999999853 45567789999
Q ss_pred CcCcHHHHHHHHHHHHHHHHhhhcCCCCCCCCccccccccccccceEEEeEEEecCCCCCccccccceeeEEeeecc-cc
Q 001479 616 SQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEIYGW-VE 694 (1071)
Q Consensus 616 ~QQDA~EFL~~LLd~Le~e~~~~~~~e~k~~~~~~~~siI~~lF~g~l~s~ikC~~Cg~~S~~~E~f~~LsL~I~~~-~~ 694 (1071)
+||||||||++|||.|++++........... .........++|+|++++.++|..|++++.+.++|++|+|+++.. ..
T Consensus 32 ~QQDAhEFL~~LLd~l~~~~~~~~~~~~~~~-~~~~~~~~~~~F~~~l~s~i~C~~C~~~s~~~e~~~~L~L~i~~~~~~ 110 (245)
T cd02673 32 DQQDAHEFLLTLLEAIDDIMQVNRTNVPPSN-IEIKRLNPLEAFKYTIESSYVCIGCSFEENVSDVGNFLDVSMIDNKLD 110 (245)
T ss_pred chhhHHHHHHHHHHHHHHHHHhhcccCCCCc-ccccccCHhHheeeEEEeEEEecCCCCeeeeccccceeccccccCCcc
Confidence 9999999999999999987754322111000 001111245789999999999999999999999999999999864 46
Q ss_pred cHHHHHHhcCCCCcCCCCCccccccccccceeeEEEEEeecCceEEEEEeeecccccccccceEecCccCCCCCccCCCC
Q 001479 695 SLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQEGRYGKINKCITFPEMLDMMPFMTGTG 774 (1071)
Q Consensus 695 sLee~L~~f~~~E~LdGdnky~C~~Ck~k~~A~K~~~I~klP~ILiIqLkRF~~~~~~KI~~~V~FPe~LDL~~y~~~~~ 774 (1071)
.|++++..|...+.++ |+|++|+.+ .+.|+.+|.++|++|+|||+||.... ++...+.+ ..++|.+|..
T Consensus 111 ~le~l~~~~~~~~~~e----~~C~~C~~~-~a~k~~~i~~~P~vL~i~lkRf~~~~--~~~~~~~~-~~~~~~~~~~--- 179 (245)
T cd02673 111 IDELLISNFKTWSPIE----KDCSSCKCE-SAISSERIMTFPECLSINLKRYKLRI--ATSDYLKK-NEEIMKKYCG--- 179 (245)
T ss_pred hHHHHHHHhhcccccC----ccCCCCCCc-cceeechhhhCChhhEEeeEeeeecc--cccccccc-cccccccccC---
Confidence 7888888888877775 899999975 78889999999999999999996432 22222222 2456777664
Q ss_pred CCCCceeEEEEEEEecCCCCCCCceEEEEEECC--CCCEEEEcCCeeeeecCCccc---CCccEEEEEE
Q 001479 775 DTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDM--QGTWFRIDDTQVHPVPMSQVM---SEGAYMLFYM 838 (1071)
Q Consensus 775 ~~~~~YeL~gVIvH~G~~~S~~sGHYvayVK~~--dg~Wy~FNDs~Vt~vs~eeVl---s~~AYILfY~ 838 (1071)
....|+|+|||+|.|. +.++|||+||+|.. +++||+|||+.|+++++++|. .+.||||||+
T Consensus 180 -~~~~Y~L~~VV~H~G~--~~~~GHY~a~vk~~~~~~~Wy~fnD~~V~~v~~~~v~~~~~~~aYiLFY~ 245 (245)
T cd02673 180 -TDAKYSLVAVICHLGE--SPYDGHYIAYTKELYNGSSWLYCSDDEIRPVSKNDVSTNARSSGYLIFYD 245 (245)
T ss_pred -CCceEEEEEEEEECCC--CCCCceEEEEEEcCCCCCeEEEeeCceeeEcCHHHHhhccCCceEEEEEC
Confidence 3568999999999997 56799999999974 578999999999999999998 4689999995
No 24
>cd02666 Peptidase_C19J A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.2e-40 Score=375.59 Aligned_cols=271 Identities=23% Similarity=0.319 Sum_probs=213.9
Q ss_pred CcccccCCCcccHHHHHHHHHcCHHHHHHHHhcccCcc-----------cC---------CCchhHHHHHHHHHHHHHhC
Q 001479 533 PRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSA-----------CC---------GKDWCLMCELEQHVMMLRES 592 (1071)
Q Consensus 533 p~GL~NlGNTCYmNSVLQ~L~sip~Fr~~Ll~~~~~~~-----------~~---------~~~~~ll~qL~kLf~~L~ss 592 (1071)
|+||.|+||||||||+||+|+++|+||++++....... .. ....+|+.+|+.||..|+.+
T Consensus 1 PvGL~NlGNTCYmNSlLQ~L~~i~~lR~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LF~~l~~s 80 (343)
T cd02666 1 PAGLDNIGNTCYLNSLLQYFFTIKPLRDLVLNFDESKAELASDYPTERRIGGREVSRSELQRSNQFVYELRSLFNDLIHS 80 (343)
T ss_pred CCCcccCCceeHHHHHHHHHHccHHHHHHHHcCCccccccccccccccccCccccchhhhhhHHHHHHHHHHHHHHHHhC
Confidence 68999999999999999999999999999987542111 00 01236999999999999865
Q ss_pred C-CCCChHHHHHHHHhcccccCCCCcCcHHHHHHHHHHHHHHHHhhhcCCC--CCCCCccccccccccccceEEEeEEEe
Q 001479 593 A-GPLSPGRILSHMRSISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGE--SKVDPRLQETTFIQHTFGGRLWSKVKC 669 (1071)
Q Consensus 593 ~-~~isP~~fl~~L~k~~~~F~~g~QQDA~EFL~~LLd~Le~e~~~~~~~e--~k~~~~~~~~siI~~lF~g~l~s~ikC 669 (1071)
. ..+.|..++..+.. .||||+||+..||+.|+.++....... ..........++|.++|.|++.+.++|
T Consensus 81 ~~~~v~P~~~l~~l~~--------~QQDa~Ef~~~lld~Le~~lk~~~~~~~~~~~~~~~~~~~~I~~lF~G~~~~~i~c 152 (343)
T cd02666 81 NTRSVTPSKELAYLAL--------RQQDVTECIDNVLFQLEVALEPISNAFAGPDTEDDKEQSDLIKRLFSGKTKQQLVP 152 (343)
T ss_pred CCCccCcHHHHHhccc--------cccchHHHHHHHHHHHHHHhcCccccccCcccccccchhhhhhHhceeeEEEEEEe
Confidence 5 78999999877642 899999999999999999764321100 000112245679999999999999999
Q ss_pred cCCC---CCccccccceeeEEeeec---------ccccHHHHHHhcCCCCcCCCCCccccccccccceeeEEEEEeecCc
Q 001479 670 LRCS---HESERYENIMDLTLEIYG---------WVESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPN 737 (1071)
Q Consensus 670 ~~Cg---~~S~~~E~f~~LsL~I~~---------~~~sLee~L~~f~~~E~LdGdnky~C~~Ck~k~~A~K~~~I~klP~ 737 (1071)
..|+ ..+.+.|+|++|+|+|.. ...+|.+||+.|+..|. |.++|+
T Consensus 153 ~~~~~~~~~s~~~E~F~~L~l~I~~~~~~~~~~~~~~~L~d~L~~~~~~e~-----------------------~~~~P~ 209 (343)
T cd02666 153 ESMGNQPSVRTKTERFLSLLVDVGKKGREIVVLLEPKDLYDALDRYFDYDS-----------------------LTKLPQ 209 (343)
T ss_pred cccCCCCCCccccceeEEEEEecCcccccccccCCCCCHHHHHHHhcChhh-----------------------hccCCH
Confidence 9997 679999999999999986 67899999999998666 889999
Q ss_pred eEEEEEeeeccc--ccccccceEecCccCCCCCccCCC----------------------------CCCCCceeEEEEEE
Q 001479 738 ILTIVLKRFQEG--RYGKINKCITFPEMLDMMPFMTGT----------------------------GDTPPLYMLYSVVV 787 (1071)
Q Consensus 738 ILiIqLkRF~~~--~~~KI~~~V~FPe~LDL~~y~~~~----------------------------~~~~~~YeL~gVIv 787 (1071)
+|.|||+ +... ...+..++++||...|+.+++... .-....|+|+|||+
T Consensus 210 vl~~qlq-~~~~~~~~~~~~dry~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~Y~L~avv~ 288 (343)
T cd02666 210 RSQVQAQ-LAQPLQRELISMDRYELPSSIDDIDELIREAIQSESSLVRQAQNELAELKHEIEKQFDDLKSYGYRLHAVFI 288 (343)
T ss_pred HHHHHHh-hcccccchheeeccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCceEEEEEEE
Confidence 9999998 3221 224666777777666665543321 11578999999999
Q ss_pred EecCCCCCCCceEEEEEECC-CCCEEEEcCCeeeeecCCcccC------CccEEEEEE
Q 001479 788 HLDTQNASFSGHYVSYIKDM-QGTWFRIDDTQVHPVPMSQVMS------EGAYMLFYM 838 (1071)
Q Consensus 788 H~G~~~S~~sGHYvayVK~~-dg~Wy~FNDs~Vt~vs~eeVls------~~AYILfY~ 838 (1071)
|.|.. ++|||++|+|+. ++.||+|||..|++++.++++. .+||||+|.
T Consensus 289 H~G~~---~~GHY~~~~~~~~~~~W~~~dD~~V~~v~~~ev~~~~~~~~~~pY~l~Yv 343 (343)
T cd02666 289 HRGEA---SSGHYWVYIKDFEENVWRKYNDETVTVVPASEVFLFTLGNTATPYFLVYV 343 (343)
T ss_pred eecCC---CCCeEEEEEEECCCCeEEEEECCeeEEecHHHHhhcccCCCCCCEEEEeC
Confidence 99963 599999999974 4789999999999998888765 479999994
No 25
>cd02665 Peptidase_C19I A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=5.9e-40 Score=352.16 Aligned_cols=217 Identities=25% Similarity=0.393 Sum_probs=182.2
Q ss_pred ccccCCCcccHHHHHHHHHcCHHHHHHHHhcccCcccCCCchhHHHHHHHHHHHHHhCCCCCChHHHHHHHHhcccccCC
Q 001479 535 GLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESAGPLSPGRILSHMRSISCQIGD 614 (1071)
Q Consensus 535 GL~NlGNTCYmNSVLQ~L~sip~Fr~~Ll~~~~~~~~~~~~~~ll~qL~kLf~~L~ss~~~isP~~fl~~L~k~~~~F~~ 614 (1071)
||.|.|||||+|+|.|+|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~------------------------------------------------------------ 20 (228)
T cd02665 1 GLKNVGNTCWFSAVIQSLFS------------------------------------------------------------ 20 (228)
T ss_pred CccccCcchhHHHHHHHHHH------------------------------------------------------------
Confidence 89999999999999999985
Q ss_pred CCcCcHHHHHHHHHHHHHHHHhhhcCCCCCCCCccccccccccccceEEEeEEEecCCCCCccccccceeeEEeeecccc
Q 001479 615 GSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEIYGWVE 694 (1071)
Q Consensus 615 g~QQDA~EFL~~LLd~Le~e~~~~~~~e~k~~~~~~~~siI~~lF~g~l~s~ikC~~Cg~~S~~~E~f~~LsL~I~~~~~ 694 (1071)
.||||+||++.||+.|++.+...... ..+.....++|.++|+|++...+.| |+..+.+.|+|++|+|+|.+ ..
T Consensus 21 -~QQDa~Ef~~~Lld~Le~~l~~~~~~---~~~~~~~~~~i~~lF~G~~~~~~~~--~~~~s~~~E~F~~L~l~i~~-~~ 93 (228)
T cd02665 21 -QQQDVSEFTHLLLDWLEDAFQAAAEA---ISPGEKSKNPMVQLFYGTFLTEGVL--EGKPFCNCETFGQYPLQVNG-YG 93 (228)
T ss_pred -HHHHHHHHHHHHHHHHHHHhcccccc---ccccccccchHhhceEEEEEEEEEE--CCCcccccCccEEEEEEECC-CC
Confidence 79999999999999999976432110 1122245678999999999987766 78889999999999999987 58
Q ss_pred cHHHHHHhcCCCCcCCCCCccccccccccceeeEEEEEeecCceEEEEEeeeccc--ccccccceEecCccCCCCCccCC
Q 001479 695 SLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQEG--RYGKINKCITFPEMLDMMPFMTG 772 (1071)
Q Consensus 695 sLee~L~~f~~~E~LdGdnky~C~~Ck~k~~A~K~~~I~klP~ILiIqLkRF~~~--~~~KI~~~V~FPe~LDL~~y~~~ 772 (1071)
+|++||+.|+.+|.+++++.++ ...+.++..|.++|+||+|||+||.+. ...|+++.|.||..|
T Consensus 94 ~L~e~L~~~~~ee~l~~~~~~~------~~~~~~~~~i~~lP~vL~i~LkRF~~~~~~~~Ki~~~v~FP~~l-------- 159 (228)
T cd02665 94 NLHECLEAAMFEGEVELLPSDH------SVKSGQERWFTELPPVLTFELSRFEFNQGRPEKIHDKLEFPQII-------- 159 (228)
T ss_pred CHHHHHHHhhhhcccccccccc------hhhhhhhhhhhhCChhhEEEeEeeEEcCCccEECCEEEEeeCcc--------
Confidence 9999999999999998754332 234566678999999999999999864 357999999999887
Q ss_pred CCCCCCceeEEEEEEEecCCCCCCCceEEEEEECC-CCCEEEEcCCeeeeecCCcccC--------CccEEEEEE
Q 001479 773 TGDTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDM-QGTWFRIDDTQVHPVPMSQVMS--------EGAYMLFYM 838 (1071)
Q Consensus 773 ~~~~~~~YeL~gVIvH~G~~~S~~sGHYvayVK~~-dg~Wy~FNDs~Vt~vs~eeVls--------~~AYILfY~ 838 (1071)
....|+|+|||+|.|. +++|||++|+|+. +++||+|||+.|++++.++|.. ..||||||.
T Consensus 160 ---~~~~Y~L~aVi~H~G~---~~~GHY~~~i~~~~~~~W~~fdD~~V~~~~~~~v~~~~fGg~~~~~AYiLfYv 228 (228)
T cd02665 160 ---QQVPYELHAVLVHEGQ---ANAGHYWAYIYKQSRQEWEKYNDISVTESSWEEVERDSFGGGRNPSAYCLMYI 228 (228)
T ss_pred ---CCceeEEEEEEEecCC---CCCCEEEEEEEcCCCCEEEEEECCeeEEcCHHHHhhhccCCCCCCceEEEEEC
Confidence 2468999999999996 4589999999863 7899999999999999888864 369999994
No 26
>cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=4.2e-39 Score=338.36 Aligned_cols=235 Identities=39% Similarity=0.638 Sum_probs=203.1
Q ss_pred ccccCCCcccHHHHHHHHHcCHHHHHHHHhcccCcccCCCchhHHHHHHHHHHHHHhCCCCCChHHHHHHHHhcccccCC
Q 001479 535 GLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESAGPLSPGRILSHMRSISCQIGD 614 (1071)
Q Consensus 535 GL~NlGNTCYmNSVLQ~L~sip~Fr~~Ll~~~~~~~~~~~~~~ll~qL~kLf~~L~ss~~~isP~~fl~~L~k~~~~F~~ 614 (1071)
||.|.||+||+||+||+|++
T Consensus 1 Gl~N~~n~Cy~ns~lq~l~~------------------------------------------------------------ 20 (255)
T cd02257 1 GLNNLGNTCYLNSVLQALFS------------------------------------------------------------ 20 (255)
T ss_pred CccccCcchHHhHHHHHHHH------------------------------------------------------------
Confidence 89999999999999999997
Q ss_pred CCcCcHHHHHHHHHHHHHHHHhhhcCCCCCCCCccccccccccccceEEEeEEEecCCCCCccccccceeeEEeeecc--
Q 001479 615 GSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEIYGW-- 692 (1071)
Q Consensus 615 g~QQDA~EFL~~LLd~Le~e~~~~~~~e~k~~~~~~~~siI~~lF~g~l~s~ikC~~Cg~~S~~~E~f~~LsL~I~~~-- 692 (1071)
.||||+|||..||+.|+.++...... ........+.+.++|.+.+...+.|..|+..+.....+..+.|+++..
T Consensus 21 -~q~Da~E~l~~ll~~l~~~~~~~~~~---~~~~~~~~~~i~~~F~~~~~~~~~c~~c~~~~~~~~~~~~l~l~~~~~~~ 96 (255)
T cd02257 21 -EQQDAHEFLLFLLDKLHEELKKSSKR---TSDSSSLKSLIHDLFGGKLESTIVCLECGHESVSTEPELFLSLPLPVKGL 96 (255)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHhhccc---ccccccCCchhhhhcccEEeeEEECCCCCCCccCcccceeEEeeccCCCC
Confidence 89999999999999999887543221 111123456899999999999999999998888888888888888865
Q ss_pred -cccHHHHHHhcCCCCcCCCCCcccccccc--ccceeeEEEEEeecCceEEEEEeeeccc---ccccccceEecCccCCC
Q 001479 693 -VESLEDALTQFTSPEDLDGENMYKCARCA--TYVRARKQLSIHEAPNILTIVLKRFQEG---RYGKINKCITFPEMLDM 766 (1071)
Q Consensus 693 -~~sLee~L~~f~~~E~LdGdnky~C~~Ck--~k~~A~K~~~I~klP~ILiIqLkRF~~~---~~~KI~~~V~FPe~LDL 766 (1071)
..+|+++|+.++..|.+++ +.|..|+ ..+.+.++..|.++|++|+|+|+||... ...|++..|.||++|++
T Consensus 97 ~~~~l~~~l~~~~~~e~~~~---~~~~~c~~~~~~~~~~~~~i~~lP~~L~i~l~R~~~~~~~~~~k~~~~v~~~~~l~~ 173 (255)
T cd02257 97 PQVSLEDCLEKFFKEEILEG---DNCYKCEKKKKQEATKRLKIKKLPPVLIIHLKRFSFNEDGTKEKLNTKVSFPLELDL 173 (255)
T ss_pred CCCcHHHHHHHhhhhhccCC---CCcccCCCCcccceeEEEecccCCceeEEEeeceeeccccccccCCCeEeCCCcccC
Confidence 4899999999999999987 7788887 6888999999999999999999999764 35799999999999999
Q ss_pred CCccCC------CCCCCCceeEEEEEEEecCCCCCCCceEEEEEECCC-CCEEEEcCCeeeeecCCcc-----cCCccEE
Q 001479 767 MPFMTG------TGDTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDMQ-GTWFRIDDTQVHPVPMSQV-----MSEGAYM 834 (1071)
Q Consensus 767 ~~y~~~------~~~~~~~YeL~gVIvH~G~~~S~~sGHYvayVK~~d-g~Wy~FNDs~Vt~vs~eeV-----ls~~AYI 834 (1071)
..++.. .......|+|+|||+|.|. +..+|||+||+|... ++||+|||..|++++.+++ ....|||
T Consensus 174 ~~~~~~~~~~~~~~~~~~~Y~L~~vi~h~G~--~~~~GHY~~~~~~~~~~~W~~~nD~~V~~v~~~~~~~~~~~~~~~yl 251 (255)
T cd02257 174 SPYLSEGEKDSDSDNGSYKYELVAVVVHSGT--SADSGHYVAYVKDPSDGKWYKFNDDKVTEVSEEEVLEFGSLSSSAYI 251 (255)
T ss_pred ccccccccccccccCCCccEEEEEEEEEecC--CCCCcCeEEEEeCCCCCceEEEeccccEEcCHHHhhhccCCCCceEE
Confidence 888742 3445789999999999998 557999999999865 8999999999999999888 4678999
Q ss_pred EEEE
Q 001479 835 LFYM 838 (1071)
Q Consensus 835 LfY~ 838 (1071)
|||+
T Consensus 252 l~Y~ 255 (255)
T cd02257 252 LFYE 255 (255)
T ss_pred EEEC
Confidence 9995
No 27
>KOG1867 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.5e-39 Score=376.64 Aligned_cols=307 Identities=34% Similarity=0.579 Sum_probs=268.5
Q ss_pred cCCcccccCCCcccHHHHHHHHHcCHHHHHHHHhcccCcccCCC-chhHHHHHHHHHHHHHhC--CCCCChHHHHHHHHh
Q 001479 531 LSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGK-DWCLMCELEQHVMMLRES--AGPLSPGRILSHMRS 607 (1071)
Q Consensus 531 ~gp~GL~NlGNTCYmNSVLQ~L~sip~Fr~~Ll~~~~~~~~~~~-~~~ll~qL~kLf~~L~ss--~~~isP~~fl~~L~k 607 (1071)
.+.+||.|+|+||+||++||.|.+.+..+...+...+......+ ..|+.+++.+++..+++. +.++.|..++..+++
T Consensus 159 ~~l~g~~n~g~tcfmn~ilqsl~~~~~~~~~~l~~~h~~~~~~~~~~~l~~~~~~~~~~~~s~~~~~~~sp~~~l~~~~k 238 (492)
T KOG1867|consen 159 LGLRGLRNLGSTCFMNVILQSLLHDPLSRSSFLSGIHSKEPSSSGSSCLVCDLDRLFQALYSGHNRTPYSPFELLNLVWK 238 (492)
T ss_pred ecccccccccHHHHHHHHHHHhhccchhhccchhhhcccCCCCCCCcchhhhhhhhhhHhhcCCCCCCcChHHHHHHHHH
Confidence 67899999999999999999999999999998888888666555 789999999999999864 568999999999999
Q ss_pred cccccCCCCcCcHHHHHHHHHHHHHHHHhhhcCCCC--CCCCccccccccccccceEEEeEEEecCCCCCccccccceee
Q 001479 608 ISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGES--KVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDL 685 (1071)
Q Consensus 608 ~~~~F~~g~QQDA~EFL~~LLd~Le~e~~~~~~~e~--k~~~~~~~~siI~~lF~g~l~s~ikC~~Cg~~S~~~E~f~~L 685 (1071)
..+.+.+..||||+||+..+++.++... ...+.. .........+++...|.|.+...++|..|+..+..+++|++|
T Consensus 239 ~~~~~~g~~Qqda~eF~~~~~~~~~~~~--~~~~k~~~~~~~~~~c~~iv~~~F~G~L~~~v~c~~c~~~S~~~dpf~di 316 (492)
T KOG1867|consen 239 HSPNLAGYEQQDAHEFLIALLDRLHREK--DDCGKSLIASQSNKQCPCIVHTIFSGTLQSDVTCQTCGSKSTTYDPFMDI 316 (492)
T ss_pred hCcccccccccchHHHHHHhcccccccc--cccccccccccCCcccccccceeecceeccceeehhhcceeeeccCccce
Confidence 9999999999999999999999999865 111100 001111447899999999999999999999999999999999
Q ss_pred EEeeecc---------cccHHHHHHhcCCCCcCCCCCccccccccccceeeEEEEEeecCceEEEEEeeeccc---cccc
Q 001479 686 TLEIYGW---------VESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQEG---RYGK 753 (1071)
Q Consensus 686 sL~I~~~---------~~sLee~L~~f~~~E~LdGdnky~C~~Ck~k~~A~K~~~I~klP~ILiIqLkRF~~~---~~~K 753 (1071)
+|+|+.. ...+.+|+..+...|......++.|..|+.++.++|++.|.++|.+|.+||+||+.. ...|
T Consensus 317 sL~i~~~~~~~~~~~~~~~~~~cl~~~~~~~~~~~~~~~~c~~c~~~~~~~kql~~~~lP~~l~~~lkRfe~~~~~~~~k 396 (492)
T KOG1867|consen 317 SLDIPDQFTSSSVRSPELTLLDCLDRFTRSEQLGKDSKYKCSSCKSKQESTKQLTIRKLPAVLCLHLKRFEHSATGAREK 396 (492)
T ss_pred eeecchhccCcccccchhhhhhhhhhhhhhhhcCcccccccCCcccccccccccccccCCceeeeeeccccccccccccc
Confidence 9999843 156999999999999988888999999999999999999999999999999999742 2349
Q ss_pred ccceEecCccCCCCCccCCC-----CCCCCceeEEEEEEEecCCCCCCCceEEEEEECCCCCEEEEcCCeeeeecCCccc
Q 001479 754 INKCITFPEMLDMMPFMTGT-----GDTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDMQGTWFRIDDTQVHPVPMSQVM 828 (1071)
Q Consensus 754 I~~~V~FPe~LDL~~y~~~~-----~~~~~~YeL~gVIvH~G~~~S~~sGHYvayVK~~dg~Wy~FNDs~Vt~vs~eeVl 828 (1071)
+++.|.||..|+|.+|+..+ ...+..|+|.|||+|+|..+ +|||+||.|. .+.||+|||+.|+.+++++|+
T Consensus 397 i~~~v~fp~~l~m~p~~~~~~~~~~~~~~~~Y~L~AVV~H~G~~~---SGHY~aY~r~-~~~~~~~dDs~v~~~s~~eVl 472 (492)
T KOG1867|consen 397 IDSYVSFPVLLNMKPYCSSEKLKSQDNPDHLYELRAVVVHHGTVG---SGHYVAYRRQ-SGGWFKCDDSTVTKVSEEEVL 472 (492)
T ss_pred cCcccccchhhcCCccccccccccCCCCCceEEEEEEEEeccCCC---CCceEEEEEe-CCCcEEEcCeEEEEeeHHHhh
Confidence 99999999999999998742 12468999999999999655 9999999998 888999999999999999999
Q ss_pred CCccEEEEEEEcCCC
Q 001479 829 SEGAYMLFYMRSCPR 843 (1071)
Q Consensus 829 s~~AYILfY~R~s~~ 843 (1071)
+..||+|||.+...+
T Consensus 473 ~~~aylLFY~~~~~~ 487 (492)
T KOG1867|consen 473 SSQAYLLFYTQEQVE 487 (492)
T ss_pred hchhhheehhHHhhh
Confidence 999999999987544
No 28
>cd02672 Peptidase_C19P A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1e-36 Score=335.47 Aligned_cols=239 Identities=22% Similarity=0.315 Sum_probs=198.3
Q ss_pred cccCCcCCcccccCCCcccHHHHHHHHHcCHHHHHHHHhcccCcccCCCchhHHHHHHHHHHHHHhCCCCCChHHHHHHH
Q 001479 526 EVIDLLSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESAGPLSPGRILSHM 605 (1071)
Q Consensus 526 ~~~~~~gp~GL~NlGNTCYmNSVLQ~L~sip~Fr~~Ll~~~~~~~~~~~~~~ll~qL~kLf~~L~ss~~~isP~~fl~~L 605 (1071)
..++..+++||.|.|.+||+||+||+|+++|+||+++ . +....+..+.|++|+|..||..
T Consensus 8 ~~~n~t~~~gl~~~~~~~y~n~~lq~~~~~~~~~~~~-~--~~~~~~~~~~~l~~el~~lfs~----------------- 67 (268)
T cd02672 8 EFYNKTNYAGLENHITNSYCNSLLQLLYFIPPFRNFT-A--IILVACPKESCLLCELGYLFST----------------- 67 (268)
T ss_pred cccccccccccccCCccchHHHHHHHHHhcHHHHHHH-H--hhcccCCcCccHHHHHHHHHHH-----------------
Confidence 3445578999999999999999999999999999983 2 3334467789999999999911
Q ss_pred HhcccccCCCCcCcHHHHHHHHHHHHHHHHhhhcCCCCCCCCccccccccccccceEEEeEEEecCCCCCccccccceee
Q 001479 606 RSISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDL 685 (1071)
Q Consensus 606 ~k~~~~F~~g~QQDA~EFL~~LLd~Le~e~~~~~~~e~k~~~~~~~~siI~~lF~g~l~s~ikC~~Cg~~S~~~E~f~~L 685 (1071)
=.+-|-++|++.|..+... .+ ..|++++.+.++++.|
T Consensus 68 -------------~iq~F~~fll~~i~~~~~~--------------------~~----------~~C~~~s~~~~~~~~L 104 (268)
T cd02672 68 -------------LIQNFTRFLLETISQDQLG--------------------TP----------FSCGTSRNSVSLLYTL 104 (268)
T ss_pred -------------HHHHHHHHHHHHHHHHhcc--------------------cC----------CCCCceeeccccceee
Confidence 1255778888888753211 00 6799999999999999
Q ss_pred EEeeecc----cccHHHHHHhcCCCCcCCCCCccccccccccceeeEEEEEeecCc----eEEEEEeeecccc-------
Q 001479 686 TLEIYGW----VESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPN----ILTIVLKRFQEGR------- 750 (1071)
Q Consensus 686 sL~I~~~----~~sLee~L~~f~~~E~LdGdnky~C~~Ck~k~~A~K~~~I~klP~----ILiIqLkRF~~~~------- 750 (1071)
+|+++.. ..+|++||+.|+..|.+. +++|++|++++.+.|+..|.++|+ ||+|||+||....
T Consensus 105 sLpip~~~~~~~~sl~~cL~~~~~~E~~~---~~~C~~C~~~~~a~k~~~i~~lP~~L~~VL~i~lkrf~~~~~~~~~~~ 181 (268)
T cd02672 105 SLPLGSTKTSKESTFLQLLKRSLDLEKVT---KAWCDTCCKYQPLEQTTSIRHLPDILLLVLVINLSVTNGEFDDINVVL 181 (268)
T ss_pred eeecCccccccCCCHHHHHHHHhhhhhcc---cccccccCcccccEEEEEeecCCCcccceEEEEEeccChhhcccCcce
Confidence 9999853 469999999999998654 499999999999999999999999 9999999997421
Q ss_pred --cccccceEecCccCCCCCccCCCCCCCCceeEEEEEEEecCCCCCCCceEEEEEECC-----CCCEEEEcCCeeeeec
Q 001479 751 --YGKINKCITFPEMLDMMPFMTGTGDTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDM-----QGTWFRIDDTQVHPVP 823 (1071)
Q Consensus 751 --~~KI~~~V~FPe~LDL~~y~~~~~~~~~~YeL~gVIvH~G~~~S~~sGHYvayVK~~-----dg~Wy~FNDs~Vt~vs 823 (1071)
..|++..|.||..+++......+......|+|+|||+|.|. +..+||||||||.. .++||+|||..|++++
T Consensus 182 ~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~Y~L~gvV~hig~--~~~~GHyva~vk~~~~~~~~~~WylFND~~V~~vs 259 (268)
T cd02672 182 PSGKVMQNKVSPKAIDHDKLVKNRGQESIYKYELVGYVCEIND--SSRGQHNVVFVIKVNEESTHGRWYLFNDFLVTPVS 259 (268)
T ss_pred eEEEecCCeecccccccchhhhccCCCCCceEEEEEEEEEecC--CCCCCcEEEEEEccCCCCCCCcEEEecCeEEEEcC
Confidence 24788899999988887666665566789999999999997 34689999999985 5789999999999997
Q ss_pred CCcccCCccEEEEEE
Q 001479 824 MSQVMSEGAYMLFYM 838 (1071)
Q Consensus 824 ~eeVls~~AYILfY~ 838 (1071)
+ .||||||+
T Consensus 260 ~------~aYiLfY~ 268 (268)
T cd02672 260 E------LAYILLYQ 268 (268)
T ss_pred c------hheeeecC
Confidence 6 89999995
No 29
>KOG1873 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.3e-37 Score=356.23 Aligned_cols=306 Identities=33% Similarity=0.509 Sum_probs=243.2
Q ss_pred cCCcccccCCCcccHHHHHHHHHcCHHHHHHHHhcccCccc-----------------CCCchhHHHHHHHHHHHHHhCC
Q 001479 531 LSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSAC-----------------CGKDWCLMCELEQHVMMLRESA 593 (1071)
Q Consensus 531 ~gp~GL~NlGNTCYmNSVLQ~L~sip~Fr~~Ll~~~~~~~~-----------------~~~~~~ll~qL~kLf~~L~ss~ 593 (1071)
..-+||.|+|||||+|||||.|..+|.|++.|......... ..+...+..+|..|..+.....
T Consensus 203 ~~VrGL~NLGNTCFFNavMQnL~qt~~L~d~l~e~~~Sgt~v~I~~~~~s~l~~L~~el~~~g~lt~al~~~~e~~e~~k 282 (877)
T KOG1873|consen 203 YIVRGLTNLGNTCFFNAVMQNLAQTPALRDVLKEEKESGTSVKIRPPLDSSLSPLFSELSSPGPLTYALANLLEMSETTK 282 (877)
T ss_pred ccccccccccchhhHHHHHHHHhhcHHHHHHHHhhccCCceeEecCccccchhhHHHhccCCcchhHHHHhhhhhhhccC
Confidence 34479999999999999999999999999999765443211 1133456667777666667788
Q ss_pred CCCChHHHHHHHHhcccccCCCCcCcHHHHHHHHHHHHHHHHh--------hhcCCCC-CCC-------------Ccccc
Q 001479 594 GPLSPGRILSHMRSISCQIGDGSQEDAHEFLRLLVASMQSICL--------ERHGGES-KVD-------------PRLQE 651 (1071)
Q Consensus 594 ~~isP~~fl~~L~k~~~~F~~g~QQDA~EFL~~LLd~Le~e~~--------~~~~~e~-k~~-------------~~~~~ 651 (1071)
..+.|..|+..+....++|..+.||||||+|+.|||-|..+-. ..++++. .+. +....
T Consensus 283 sv~~Pr~lF~~~C~k~pqF~g~~QhDsHELLR~LLD~l~~EE~~~~kk~Il~~fG~~t~~l~scle~~q~sKvYe~f~~~ 362 (877)
T KOG1873|consen 283 SVITPRTLFGQFCSKAPQFRGYDQHDSHELLRCLLDSLRSEESRRRKKNILSNFGGETSSLVSCLECGQKSKVYEPFKDL 362 (877)
T ss_pred CccCHHHHHHHHHHhCCcccccccccHHHHHHHHHHhhhHHHHHHHHHhHHHhhCccccchhhhhhccchhhcccccccC
Confidence 8999999999999999999999999999999999999976521 1222221 111 11122
Q ss_pred ccccccccceEEEeEEEecCCCCCccccccceeeEEeeec----------------------------------------
Q 001479 652 TTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEIYG---------------------------------------- 691 (1071)
Q Consensus 652 ~siI~~lF~g~l~s~ikC~~Cg~~S~~~E~f~~LsL~I~~---------------------------------------- 691 (1071)
.-++..+|.+-+.+.+.|..|. ++...+.|.+++++|-.
T Consensus 363 ~~~vp~~~~~~~~s~~~~~~~~-vss~~~s~~~~t~pv~~~~~~~qs~~~s~~~~~tsd~sd~spst~~~t~n~~~~e~~ 441 (877)
T KOG1873|consen 363 SLPVPLSFNGPLTSQIECQACD-VSSVHESFLSETLPVLPSQSLSQSSDSSQHLHLTSDSSDTSPSTEAPTKNLPSSELL 441 (877)
T ss_pred CcccccccCCCcccchhhhccc-eeccchhhcccccccccCccccccCCCcccceeccccccCCccccCcccCccccccc
Confidence 3445578888889999998888 66666777777777620
Q ss_pred --------------------------------------------------------------------------------
Q 001479 692 -------------------------------------------------------------------------------- 691 (1071)
Q Consensus 692 -------------------------------------------------------------------------------- 691 (1071)
T Consensus 442 ~~~t~dn~~~~k~qS~~~~~~S~~~~~~~k~~a~s~n~n~~~~g~~~~~a~~v~~~~~~~~p~gD~e~s~Ad~~lde~n~ 521 (877)
T KOG1873|consen 442 DSLTDDNDQVFKGQSDVAGTNSKEDQNKAKNQAKSQNLNEASQGKDNEKALQVNDRQLDILPLGDGELSKADMSLDEANM 521 (877)
T ss_pred ccccccCchhhccccccccCccccccchhhhhhhhhccccccccccchhhhhhchhhccccccCcccccccccccccccc
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 001479 692 -------------------------------------------------------------------------------- 691 (1071)
Q Consensus 692 -------------------------------------------------------------------------------- 691 (1071)
T Consensus 522 ~~~sss~~~~~~~~~~~s~v~~~s~~ed~n~~~~~~~~~~~a~~Ss~~~d~~~~~~~v~~S~~s~sp~~se~~~vs~n~~ 601 (877)
T KOG1873|consen 522 DEFSSSLEKGIFRGRSTSEVSQASCNEDCNDPEPIQDGSGEASSSSSSVDREHNNHRVARSRFSRSPKKSEVKIVSGNDK 601 (877)
T ss_pred cccccccCCcccCCccHHHhhhhhhhcccCCcccccCCCCcccCCCcccccccccchhhhhhhcCCCcccceeeeccccc
Confidence
Q ss_pred --------------------------------------------------------------------------ccccHH
Q 001479 692 --------------------------------------------------------------------------WVESLE 697 (1071)
Q Consensus 692 --------------------------------------------------------------------------~~~sLe 697 (1071)
...+++
T Consensus 602 ~~g~~g~~~~Sssf~~g~~~g~~~d~d~~~~e~~~~~~T~~~~~~g~~s~~kvs~~~f~a~~S~s~~~~~~~~D~p~Svq 681 (877)
T KOG1873|consen 602 TVGDQGETENSSSFNEGDLNGHASDNDEFLIEIPDDKLTRELPVFGPPSKAKVSEQGFDAFSSISDPEVLDSSDEPCSVQ 681 (877)
T ss_pred cccccceeeechhhhccCccccccchHHhhhcCcccCCCccccccCCCccceeccCCccccccccChhhccCCCCCccHH
Confidence 012899
Q ss_pred HHHHhcCCCCcCCCCCcccccccccc---------------------------ceeeEEEEEeecCceEEEEEeeecc--
Q 001479 698 DALTQFTSPEDLDGENMYKCARCATY---------------------------VRARKQLSIHEAPNILTIVLKRFQE-- 748 (1071)
Q Consensus 698 e~L~~f~~~E~LdGdnky~C~~Ck~k---------------------------~~A~K~~~I~klP~ILiIqLkRF~~-- 748 (1071)
.||.+|+..|++.|+|+|.|++|.+. ..|.|++.|..+|+||+|||+||..
T Consensus 682 ~CL~nFT~~E~Ls~~N~~~CEnCtk~~n~~~r~k~~~n~~~sk~s~~es~~~~t~akk~~li~~aPpVltihlKrf~q~~ 761 (877)
T KOG1873|consen 682 RCLKNFTKVEILSGDNKWACENCTKNLNLQRREKRGLNEDNSKYSFNESEYRNTYAKKKVLINKAPPVLTIHLKRFFQDI 761 (877)
T ss_pred HHHHhhhhhhhcccccchhhhhhhccccccchhhccCCCCcccccccchhhhhhhhheeeecccCCceeeehHhhhhhhh
Confidence 99999999999999999999999751 1256888999999999999999963
Q ss_pred -cccccccceEecCccCCCCCccCCC-----CCCCCceeEEEEEEEecCCCCCCCceEEEEEEC----------------
Q 001479 749 -GRYGKINKCITFPEMLDMMPFMTGT-----GDTPPLYMLYSVVVHLDTQNASFSGHYVSYIKD---------------- 806 (1071)
Q Consensus 749 -~~~~KI~~~V~FPe~LDL~~y~~~~-----~~~~~~YeL~gVIvH~G~~~S~~sGHYvayVK~---------------- 806 (1071)
++..|+++.+.|++.+||.+|+.-. ......|+|+|||.|.|++. .||||+|+|.
T Consensus 762 ~~~~~k~~~h~~f~E~~dL~~~~~~rc~~l~~~~s~~Yrl~gvvehsgtm~---~ghyvayv~~~t~~~~~~~~~~~~~~ 838 (877)
T KOG1873|consen 762 RGRLSKLNKHVDFKEFEDLLDYMDFRCSHLDEPSSFVYRLAGVVEHSGTMS---YGHYVAYVRGGTFLDLSAPSNSKDFE 838 (877)
T ss_pred hchhhcccccchHHHHHHHHHHhhhhccccCCcchhhhhhccceecccccc---CCcchhhhhccchhhccCccccccch
Confidence 3457999999999999999887621 12456999999999999766 8999999983
Q ss_pred -----CCCCEEEEcCCeeeeecCCcccCCccEEEEEEEc
Q 001479 807 -----MQGTWFRIDDTQVHPVPMSQVMSEGAYMLFYMRS 840 (1071)
Q Consensus 807 -----~dg~Wy~FNDs~Vt~vs~eeVls~~AYILfY~R~ 840 (1071)
+.|+||+..|+.|+++++++|++..||||||+|.
T Consensus 839 sd~~~~~~~Wy~iSDs~VrevS~d~vLkseAYlLFYERI 877 (877)
T KOG1873|consen 839 SDAGIPSGRWYYISDSIVREVSLDEVLKSEAYLLFYERI 877 (877)
T ss_pred hccCCCCcceEEecchheecccHHHHhhhhhhhhheecC
Confidence 2589999999999999999999999999999994
No 30
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-37 Score=354.94 Aligned_cols=274 Identities=29% Similarity=0.460 Sum_probs=226.6
Q ss_pred cCCcccccCCCcccHHHHHHHHHcCHHHHHHHHhcccCcccCCCchhHHHHHHHHHHHHHhCCCCCChHHHHHHHHhccc
Q 001479 531 LSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESAGPLSPGRILSHMRSISC 610 (1071)
Q Consensus 531 ~gp~GL~NlGNTCYmNSVLQ~L~sip~Fr~~Ll~~~~~~~~~~~~~~ll~qL~kLf~~L~ss~~~isP~~fl~~L~k~~~ 610 (1071)
.+++||+|..-+||+|+.+|+|+..|.|++.+.... ...+....+.+.++. .
T Consensus 85 ~~yvglvnqa~~~~l~~~~~a~~~~~~~~~~~yts~--------------------------~~~~et~dlt~sfgw--~ 136 (1203)
T KOG4598|consen 85 HRYVGLVNQASNDLLFEQSCAISLHDSGISKCYTSE--------------------------NDSLETKDLTQSFGW--T 136 (1203)
T ss_pred cceEeehhhHHHHHHHHHhhhhccChhhhhhhhCCC--------------------------cccccchhhHhhcCC--C
Confidence 678999999999999999999999999998765211 112233333332211 1
Q ss_pred ccCCCCcCcHHHHHHHHHHHHHHHHhhhcCCCCCCCCccccccccccccceEEEeEEEecCCCCCccccccceeeEEeee
Q 001479 611 QIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEIY 690 (1071)
Q Consensus 611 ~F~~g~QQDA~EFL~~LLd~Le~e~~~~~~~e~k~~~~~~~~siI~~lF~g~l~s~ikC~~Cg~~S~~~E~f~~LsL~I~ 690 (1071)
.-..++|+|.+|+-+.++|.|+..++. .+...+|++++.|++...++|++|+.++.+.+.|++|.|+|.
T Consensus 137 s~ea~~qhdiqelcr~mfdalehk~k~-----------t~~~~li~~ly~g~m~d~v~cl~c~~e~~~~d~fld~pl~v~ 205 (1203)
T KOG4598|consen 137 SNEAYDQHDVQELCRLMFDALEHKWKG-----------TEHEKLIQDLYRGTMEDFVACLKCGRESVKTDYFLDLPLAVK 205 (1203)
T ss_pred cchhhhhhhHHHHHHHHHHHHHhhhcC-----------chHHHHHHHHhcchHHHHHHHHHcCccccccceeeccccccc
Confidence 122368999999999999999864322 234568999999999999999999999999999999999996
Q ss_pred c-----ccccHHHHHHhcCCCCcCCCCCccccccccccceeeEEEEEeecCceEEEEEeeeccc----ccccccceEecC
Q 001479 691 G-----WVESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQEG----RYGKINKCITFP 761 (1071)
Q Consensus 691 ~-----~~~sLee~L~~f~~~E~LdGdnky~C~~Ck~k~~A~K~~~I~klP~ILiIqLkRF~~~----~~~KI~~~V~FP 761 (1071)
. .-.+++++|..|..+|.++|.|+|.|++|+++++|.|.++|+.||-+|+||||||.++ ...|+++++.||
T Consensus 206 pfg~~~ay~sieeal~afvqpe~ldg~nqy~ce~ck~k~dahkgl~~~~fpy~lt~~lkrfdfdy~tmhriklnd~~tfp 285 (1203)
T KOG4598|consen 206 PFGAIHAYKSVEEALTAFVQPELLDGSNQYMCENCKSKQDAHKGLRITQFPYLLTIQLKRFDFDYNTMHRIKLNDKMTFP 285 (1203)
T ss_pred CCcchhhhhhHHHHHHHhcChhhcCCccHHHHhhhhhhhhhhcCceeeccceeeEEeeecccccchheeeeeecccccCc
Confidence 3 1358999999999999999999999999999999999999999999999999999643 347999999999
Q ss_pred ccCCCCCccCCCC------------------------------------------------------------------C
Q 001479 762 EMLDMMPFMTGTG------------------------------------------------------------------D 775 (1071)
Q Consensus 762 e~LDL~~y~~~~~------------------------------------------------------------------~ 775 (1071)
+.|||..|+.... .
T Consensus 286 ~~l~ln~~in~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~s~~~~~~~~n~~~g~~~~~~~~~~~~~~s 365 (1203)
T KOG4598|consen 286 DVLDLNDYVNKEKRSTTSSAWQQIGKNKSENEEDDMELGSPNPKRCTPGVQSPNRYQGSENVCVGQPIDHAAVDDIVKTS 365 (1203)
T ss_pred ccccHHHhhhhccCCcchhHhhhcccccccccccccccCCCCcccCcccccCcccccCccccccCCcCchhhhhhHhhcC
Confidence 9999998865211 1
Q ss_pred CCCceeEEEEEEEecCCCCCCCceEEEEEECC-CCCEEEEcCCeeeeecCCcccC-------------CccEEEEEEEcC
Q 001479 776 TPPLYMLYSVVVHLDTQNASFSGHYVSYIKDM-QGTWFRIDDTQVHPVPMSQVMS-------------EGAYMLFYMRSC 841 (1071)
Q Consensus 776 ~~~~YeL~gVIvH~G~~~S~~sGHYvayVK~~-dg~Wy~FNDs~Vt~vs~eeVls-------------~~AYILfY~R~s 841 (1071)
++..|+|++|.+|.|+ +.+|||++|||+. +++||.|||.+|+.++..++.+ .+||||.|+|.+
T Consensus 366 g~~~yelf~imihsg~---a~gghy~ayik~~d~~~w~~fnd~~v~~~t~~~i~~sfgg~~~~~~~s~tnaymlmyr~id 442 (1203)
T KOG4598|consen 366 GDNVYELFSVMVHSGN---AAGGHYFAYIKNLDQDRWYVFNDTRVDFATPLEIEKSFGGHPSGWNQSNTNAYMLMYRRID 442 (1203)
T ss_pred CccHHHhhhhheecCC---CCCceeeeeecccCcCceEEecCccccccCHHHHHHhhCCCCCCccccCcchhhhhhhhcC
Confidence 5679999999999995 5589999999985 5789999999999998777653 479999999999
Q ss_pred CCCCc
Q 001479 842 PRPRR 846 (1071)
Q Consensus 842 ~~~~~ 846 (1071)
++...
T Consensus 443 ~krn~ 447 (1203)
T KOG4598|consen 443 PKRNA 447 (1203)
T ss_pred ccccc
Confidence 86653
No 31
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.5e-36 Score=380.19 Aligned_cols=351 Identities=26% Similarity=0.358 Sum_probs=282.8
Q ss_pred CCCCCcccccccccccCcccccccccchhhhhHhhhcCceeeccchhhhhh-hcccccCCcCC-cccccCCCcccHHHHH
Q 001479 472 AQGSNVVSKMGIMKMMGLRKSTKLRQDSSELWHDQHRKLKMLFPYEEFLKL-FQYEVIDLLSP-RGLLNCGNSCYANAVL 549 (1071)
Q Consensus 472 ~~g~~hLshfGI~k~~nl~~~~Kteks~~EL~~d~n~~~~~~f~~E~~~~l-~~~~~~~~~gp-~GL~NlGNTCYmNSVL 549 (1071)
|-...--.-||.+.+.....+.+.+.++++... .++......+....+ ..++.....++ +||.|+||||||||+|
T Consensus 110 h~~~~~~~dwg~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~v~~~~~~~~~~d~k~~tg~~vGL~N~GaTCY~Nsll 186 (1093)
T KOG1863|consen 110 HVFTADERDWGFSCFSTSSDIRKPEDGYVRNGL---EKLEKRVRVEQPTSLMNPYDSKRLTGFPVGLKNLGATCYVNSLL 186 (1093)
T ss_pred hcccccccchhhccchhHhhccCcccccccccc---eeeeeeeeeecCCcccchhhhhhcCCCCccccCCCceeeehHHH
Confidence 333444456887778888888888777766542 122222222222222 12222222565 9999999999999999
Q ss_pred HHHHcCHHHHHHHHhcccCcccCCCchhHHHHHHHHHHHHHhCCC-CCChHHHHHHHHhcccccCCCCcCcHHHHHHHHH
Q 001479 550 QCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESAG-PLSPGRILSHMRSISCQIGDGSQEDAHEFLRLLV 628 (1071)
Q Consensus 550 Q~L~sip~Fr~~Ll~~~~~~~~~~~~~~ll~qL~kLf~~L~ss~~-~isP~~fl~~L~k~~~~F~~g~QQDA~EFL~~LL 628 (1071)
|+||.++.||+.+...........+...++.+|+.||..|+.+.. ++.+..+...+.... .....|||++||++.|+
T Consensus 187 Q~lf~~~~FR~~Vy~~~~~~~~~~~~~~v~~~lq~lF~~LQ~s~~k~Vdt~~~~~~~~~~~--~~~~~QqDvqEf~~~l~ 264 (1093)
T KOG1863|consen 187 QVLFLIPEFRRAVYSIPPFTGHEDPRRSIPLALQRLFYELQMSKRKYVDTSELTKSLGWDS--NDSFEQQDVQEFLTKLL 264 (1093)
T ss_pred HHHHccHHHHHHHhcCCCCCCcccccchHHHHHHHHHHHHhhcCCCCcCchhhhhhhhccc--ccHHhhhhHHHHHHHHH
Confidence 999999999999987654344445666799999999999997766 999999999986654 45579999999999999
Q ss_pred HHHHHHHhhhcCCCCCCCCccccccccccccceEEEeEEEecCCCCCccccccceeeEEeeecccccHHHHHHhcCCCCc
Q 001479 629 ASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEIYGWVESLEDALTQFTSPED 708 (1071)
Q Consensus 629 d~Le~e~~~~~~~e~k~~~~~~~~siI~~lF~g~l~s~ikC~~Cg~~S~~~E~f~~LsL~I~~~~~sLee~L~~f~~~E~ 708 (1071)
|+|++.+.... ..+.|.++|.|.+...+.|..|+..+.+.|.|+++.|++.+ ..+|.++|..|+..|.
T Consensus 265 d~LE~~~~~~~-----------~~~~l~~lf~g~~~~~i~c~~~~~~s~r~e~f~d~ql~~~g-~~nl~~sf~~y~~~E~ 332 (1093)
T KOG1863|consen 265 DWLEDSMIDAK-----------VENTLQDLFTGKMKSVIKCIDVDFESSRSESFLDLQLNGKG-VKNLEDSLHLYFEAEI 332 (1093)
T ss_pred HHHHhhccchh-----------hhhhhhhhhcCCcceEEEEEeeeeeccccccccCccccccc-hhhHHHHHHHhhhHHH
Confidence 99998653321 24578999999999999999999999999999999999998 6789999999999999
Q ss_pred CCCCCccccccccccceeeEEEEEeecCceEEEEEeeecc----cccccccceEecCccCCCCCccCC---C-CCCCCce
Q 001479 709 LDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQE----GRYGKINKCITFPEMLDMMPFMTG---T-GDTPPLY 780 (1071)
Q Consensus 709 LdGdnky~C~~Ck~k~~A~K~~~I~klP~ILiIqLkRF~~----~~~~KI~~~V~FPe~LDL~~y~~~---~-~~~~~~Y 780 (1071)
++|+|+ .|..|...+.|.+.+.+.++|++|.|+|+||.+ +...|+++.+.||..|+|.+|+.. . ....+.|
T Consensus 333 l~gdn~-~~~~~~~~~~a~k~~~f~~lPpvl~~qL~Rf~~~~~~~~~~Ki~d~~~fp~~i~~d~~~~~~~~~~~~~~~~y 411 (1093)
T KOG1863|consen 333 LLGDNK-YDAECHGLQDAKKGVLFDSLPPVLFIQLMRFEYDFSTGQKIKINDKFEFPLIIDMDRYLSRFKAEESERSAVY 411 (1093)
T ss_pred hcCCcc-ccccccchhhhhcceeeccCCchhhhhhhheeeeccCCceeehhhccCCccccccchhccccchhhhhcccee
Confidence 999999 899999999999999999999999999999975 344799999999999999999873 1 1233599
Q ss_pred eEEEEEEEecCCCCCCCceEEEEEECC-CCCEEEEcCCeeeeecCCcccC----------C------ccEEEEEEEcCCC
Q 001479 781 MLYSVVVHLDTQNASFSGHYVSYIKDM-QGTWFRIDDTQVHPVPMSQVMS----------E------GAYMLFYMRSCPR 843 (1071)
Q Consensus 781 eL~gVIvH~G~~~S~~sGHYvayVK~~-dg~Wy~FNDs~Vt~vs~eeVls----------~------~AYILfY~R~s~~ 843 (1071)
.|+||++|.| ..++|||++|++.. .++|++|||..|..++..+++. . .||+|+|.|.+..
T Consensus 412 ~l~~v~vh~g---~~~~ghy~~~i~~~~~~~w~kfdd~~v~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~lv~~~~s~~ 488 (1093)
T KOG1863|consen 412 SLHAVLVHSG---DAHSGHYVAYINPKLDGKWVKFDDLVVTVVSEKEALEQNYGTEEIELSSTADFKNAYMLVYIRDSCE 488 (1093)
T ss_pred ccchhhcccc---cccCccceeeecchhhccceeccCceeeeccHHHHHHhhCCCcchhhhcccccCCcceEEEEecCcH
Confidence 9999999966 56699999999942 7999999999999998666543 1 2899999998764
No 32
>KOG1870 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.3e-34 Score=354.99 Aligned_cols=306 Identities=28% Similarity=0.481 Sum_probs=264.6
Q ss_pred cCCcccccCCCcccHHHHHHHHHcCHHHHHHHHhcccCccc-----CCCchhHHHHHHHHHHHHHhCCC-CCChHHHHHH
Q 001479 531 LSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSAC-----CGKDWCLMCELEQHVMMLRESAG-PLSPGRILSH 604 (1071)
Q Consensus 531 ~gp~GL~NlGNTCYmNSVLQ~L~sip~Fr~~Ll~~~~~~~~-----~~~~~~ll~qL~kLf~~L~ss~~-~isP~~fl~~ 604 (1071)
+|.+||.|+|||||||+.+|+|.+.+.+++|++...+.... ......+...+..+...++.... .+.|..+...
T Consensus 244 ~g~~Gl~nlGntcfmns~~q~l~~~~~l~e~f~~~~~~~ein~~n~~~~~~~~~~~~~~l~~~~~s~~~~~v~~~~~~~~ 323 (842)
T KOG1870|consen 244 RGETGLSNLGNTCFMNSALQCLSNTPELLEYFLSDLYDREINESNPLGSAGEVASSFADLIKQLWSGNKSAVAPTSFRTS 323 (842)
T ss_pred ccccccccCCccccchhhhhhhccCcchhHHHHhHhhHhhhcccCCCcccceechhhhhHHHHhccCCccccCchhhhhh
Confidence 77899999999999999999999999999999876554421 22345677778888888887665 7999999999
Q ss_pred HHhcccccCCCCcCcHHHHHHHHHHHHHHHHhhhcCCCCCC------------------CCccccccccccccceEEEeE
Q 001479 605 MRSISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGESKV------------------DPRLQETTFIQHTFGGRLWSK 666 (1071)
Q Consensus 605 L~k~~~~F~~g~QQDA~EFL~~LLd~Le~e~~~~~~~e~k~------------------~~~~~~~siI~~lF~g~l~s~ 666 (1071)
+....+.|.++.|||.+||+-+|+|-+|+.+.......... .......++|.++|.|.+...
T Consensus 324 ~~~~a~~~~g~~q~d~~E~lafllDglhedl~~~~~kpy~~~~d~~~rp~~~~~~~~~~~~~~~~~s~i~d~~~~~~~S~ 403 (842)
T KOG1870|consen 324 LASFASEFSGYGQQDSQELLAFLLDGLHEDLNRVSSKPYVEGKDSDLRPDQEVAAEVWDYHLKRNRSVIVDLFDGTYKST 403 (842)
T ss_pred hhhccccccCcccccchhhhhHHhhhhhHHhhccCCcCcccccccccchhhhhhHHHHHhhhhhccceeeeeecceeccc
Confidence 99999999999999999999999999999875443220000 011235578999999999999
Q ss_pred EEecCCCCCccccccceeeEEeeec-------------------------------------------------------
Q 001479 667 VKCLRCSHESERYENIMDLTLEIYG------------------------------------------------------- 691 (1071)
Q Consensus 667 ikC~~Cg~~S~~~E~f~~LsL~I~~------------------------------------------------------- 691 (1071)
++|..|++++.++++|..|+|+++.
T Consensus 404 ~~c~~C~~~svt~d~f~~Lslp~p~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~i 483 (842)
T KOG1870|consen 404 LQCPTCGKVSVTFDPFGYLSLPLPGKEIQKLEVTVPHGDGFRKPGALGVSVAKNGRIRDLLEYLSRTVGLLSWELKPVEI 483 (842)
T ss_pred ccCccCCCceEEeeccccccccCCCCcccceeEEEecCCCCCChhheeeeccccchHHHHHHHHHHHhccchhhccccee
Confidence 9999999999999999999998861
Q ss_pred --------------------------------------------------------------------------------
Q 001479 692 -------------------------------------------------------------------------------- 691 (1071)
Q Consensus 692 -------------------------------------------------------------------------------- 691 (1071)
T Consensus 484 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~ 563 (842)
T KOG1870|consen 484 LFDCFNKIFAADELKLDSIYSDEELFDYELGVLKVQGSIYAIIVVRFRSRLPRSKGIRSHVSSKLFGLPLLVSVLSGAQS 563 (842)
T ss_pred ccchhhhhhccCccccccccCCcceEEeecccccccccceEEEEEeeccccccccCcccCCCccccCCcceeeccCCCcc
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 001479 692 -------------------------------------------------------------------------------- 691 (1071)
Q Consensus 692 -------------------------------------------------------------------------------- 691 (1071)
T Consensus 564 t~~~l~~~~~~~~s~~~~~~~~~v~~~~~~~~~~~~~e~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 643 (842)
T KOG1870|consen 564 TEEDLLSVICHRTSRYSREPPLNVGYGVDDQSLKEVSEQSAESSSSVSRDPSEDDNSDQDLSLECLSEESALRFFQSLES 643 (842)
T ss_pred cccchhhHHhhcccccCCcCccccccCCCcccccccccccccccccccCCChhHhccccccchhhccCcccccccccccc
Confidence
Q ss_pred --------------------------------------------------ccccHHHHHHhcCCCCcCCCCCcccccccc
Q 001479 692 --------------------------------------------------WVESLEDALTQFTSPEDLDGENMYKCARCA 721 (1071)
Q Consensus 692 --------------------------------------------------~~~sLee~L~~f~~~E~LdGdnky~C~~Ck 721 (1071)
...+|++||+.|+.+|.|..+++|+|+.|+
T Consensus 644 ~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~cl~~F~~~E~L~~~~~w~C~~Ck 723 (842)
T KOG1870|consen 644 RNKSDSEFEPGSTSIAVDWSPSAKYKYSSSLVSQPPEVEPRGASRSKGSPAPNSLESCLELFSEPETLGKDDRWYCPQCK 723 (842)
T ss_pred cccccccccCCCceeecccChhhccccccccccccccccccccccccCCCCcccHHHHHHhhcchhcCCccccccChHHH
Confidence 012899999999999999999999999999
Q ss_pred ccceeeEEEEEeecCceEEEEEeeeccccc--ccccceEecC-ccCCCCCccCCCCCCCCceeEEEEEEEecCCCCCCCc
Q 001479 722 TYVRARKQLSIHEAPNILTIVLKRFQEGRY--GKINKCITFP-EMLDMMPFMTGTGDTPPLYMLYSVVVHLDTQNASFSG 798 (1071)
Q Consensus 722 ~k~~A~K~~~I~klP~ILiIqLkRF~~~~~--~KI~~~V~FP-e~LDL~~y~~~~~~~~~~YeL~gVIvH~G~~~S~~sG 798 (1071)
++..|.|++.++++|+|||||||||++.+. .|++..|+|| ..||+++|+..... ..|+|+||++|+|.++ +|
T Consensus 724 e~~~A~Kk~~lwrlPeiLiihLKrF~~~r~~~~k~~~~v~fPi~~ld~s~~~~~~~~--~~Y~l~av~nHyG~l~---~G 798 (842)
T KOG1870|consen 724 ELRQATKKLDLWRLPEILIIHLKRFQYSRESSSKVKTKVEFPLGSLDLSEFVVNKEQ--VLYDLYAVGNHYGQLS---GG 798 (842)
T ss_pred HHHHHhhhhhhhhCCceEEEEeecceeechhhhhhCccccCCCcCCCcchhhccCcc--ceeeeeeeecccCCcC---Cc
Confidence 999999999999999999999999986543 6999999999 68999999886654 8999999999999765 89
Q ss_pred eEEEEEEC-CCCCEEEEcCCeeeeecCCcccCCccEEEEEEEcC
Q 001479 799 HYVSYIKD-MQGTWFRIDDTQVHPVPMSQVMSEGAYMLFYMRSC 841 (1071)
Q Consensus 799 HYvayVK~-~dg~Wy~FNDs~Vt~vs~eeVls~~AYILfY~R~s 841 (1071)
||+||.|+ .+++||.|||+.|.+++++++.++.||+|||+|++
T Consensus 799 HYta~~k~~~~~~w~~fdDs~v~~~~~~~i~t~~aY~Lfy~r~~ 842 (842)
T KOG1870|consen 799 HYTAYAKNVGDGKWYLFDDSSVSEVDEDEIDTEAAYVLFYRRLD 842 (842)
T ss_pred chhhhhhcCCCCceEEeccccCCCCChhhcccccceEEEEEecC
Confidence 99999998 58999999999999999999999999999999974
No 33
>PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase
Probab=100.00 E-value=2.3e-32 Score=304.32 Aligned_cols=277 Identities=25% Similarity=0.366 Sum_probs=236.2
Q ss_pred cccccCCCcccHHHHHHHHHcCHHHHHHHHhcccCcccCCCchhHHHHHHHHHHHHH-hC-CCCCChHHHHHHHHhcccc
Q 001479 534 RGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLR-ES-AGPLSPGRILSHMRSISCQ 611 (1071)
Q Consensus 534 ~GL~NlGNTCYmNSVLQ~L~sip~Fr~~Ll~~~~~~~~~~~~~~ll~qL~kLf~~L~-ss-~~~isP~~fl~~L~k~~~~ 611 (1071)
.||.|.+++||+||+||+|+++|++++.++.+. .+....|++|+|..||++|. .. ...+.+.+|+++++.....
T Consensus 1 ~GlEn~~~nsY~NslLQ~l~f~~~~r~~~l~h~----~c~~e~cL~cELgfLf~ml~~~~~g~~cq~sNflr~l~~~~~a 76 (295)
T PF13423_consen 1 SGLENHIPNSYCNSLLQVLYFIPPLRNFLLSHL----ECPKEFCLLCELGFLFDMLDSKAKGINCQASNFLRALSWIPEA 76 (295)
T ss_pred CCCcCCCCcchHHHHHHHHHhCHHHHHHHHhCc----CCCccccHHHHHHHHHHHhhhhcCCCcChHHHHHHHHhcCHHH
Confidence 499999999999999999999999999999876 26788999999999999998 54 4578899999999988766
Q ss_pred cCCCCcCcHHHHHHHHHHHHHHHHhhhcCCC--CCCCCccccccccccccceEEEeEEEecCCCCCccccccceeeEEee
Q 001479 612 IGDGSQEDAHEFLRLLVASMQSICLERHGGE--SKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEI 689 (1071)
Q Consensus 612 F~~g~QQDA~EFL~~LLd~Le~e~~~~~~~e--~k~~~~~~~~siI~~lF~g~l~s~ikC~~Cg~~S~~~E~f~~LsL~I 689 (1071)
...+.|+|+++|+++|+++|+.++....... ............|.++|+......++|..|+.++.+.+....+.|..
T Consensus 77 ~~l~~~~~iq~~~~Fll~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~c~~c~~~~~~~~~~~~~~l~y 156 (295)
T PF13423_consen 77 AALGLQQDIQSLNRFLLEQLSMELLTFKPDIFHTSENSSSSPESSISQLFGTSFETTIRCTSCGHESVKESSTLVLDLPY 156 (295)
T ss_pred HhcchhHHHHHHHHHHHHHHhHHHHhcCcccccccccccCCCcchHHHHhCcceeeeecccccCCeEEeecceeeeeccC
Confidence 7778899999999999999999875543211 11122234456799999999999999999999999988888888877
Q ss_pred ec--ccccHHHHHHhcCCCCcCCCCCccccccccccceeeEEEEEeecCceEEEEEeeecccc--cccccceEecCccCC
Q 001479 690 YG--WVESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQEGR--YGKINKCITFPEMLD 765 (1071)
Q Consensus 690 ~~--~~~sLee~L~~f~~~E~LdGdnky~C~~Ck~k~~A~K~~~I~klP~ILiIqLkRF~~~~--~~KI~~~V~FPe~LD 765 (1071)
+. ...++.++|+.++..|.... .+|++|++++....+..|.++|+||.|.++++.... ..|....+.||..++
T Consensus 157 p~~~~~~tf~~~Le~sl~~e~~~~---a~C~~C~~~~~~~~~r~i~~LPpVL~In~~~~~~~~~w~~~~~~~~~ip~~i~ 233 (295)
T PF13423_consen 157 PPSNSNVTFSQVLEHSLNREQQTR---AWCEKCNKYQPTEQRRTIRSLPPVLSINLNRYSEEEFWPKKNWLKIWIPPSIN 233 (295)
T ss_pred CCCCccchHHHHHHHHHhhccccc---ccccccccccceeeeeeccCCCcEEEEEccCCCcccccccccCCceecceeee
Confidence 75 35799999999999999886 899999999999999999999999999999986542 358888999999999
Q ss_pred CCCccCCC-------CCCCCceeEEEEEEEecCCCCCCCceEEEEEECC---CCCEEEEcCCee
Q 001479 766 MMPFMTGT-------GDTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDM---QGTWFRIDDTQV 819 (1071)
Q Consensus 766 L~~y~~~~-------~~~~~~YeL~gVIvH~G~~~S~~sGHYvayVK~~---dg~Wy~FNDs~V 819 (1071)
+..++..+ ..+..+|+|.|+|+|.|. +..+||||+|||.. +.+||+|||..|
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~Y~L~~~V~~i~~--~~~~~HlVs~vrv~~~~~~~W~lFNDflV 295 (295)
T PF13423_consen 234 LPHFIADDSQSDLEGESGIFKYELRSMVCHIGD--SIESGHLVSLVRVGPSDDSQWYLFNDFLV 295 (295)
T ss_pred ccccccccccccccCCCCceEEEEEEEEEEecC--CCCCCceEEEEEcCCCCCCcEEEECcEeC
Confidence 98887543 345679999999999998 67899999999985 368999999766
No 34
>cd02670 Peptidase_C19N A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.97 E-value=1.2e-30 Score=282.59 Aligned_cols=195 Identities=26% Similarity=0.353 Sum_probs=152.1
Q ss_pred ccccCCC-cccHHHHHHHHHcCHHHHHHHHhcccCcccCCCchhHHHHHHHHHHHHHhCCCCCChHHHHHHHHhcccccC
Q 001479 535 GLLNCGN-SCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESAGPLSPGRILSHMRSISCQIG 613 (1071)
Q Consensus 535 GL~NlGN-TCYmNSVLQ~L~sip~Fr~~Ll~~~~~~~~~~~~~~ll~qL~kLf~~L~ss~~~isP~~fl~~L~k~~~~F~ 613 (1071)
|+.|.+| +|||-|+|-+||.
T Consensus 1 g~~~~~~~~cy~d~~~~~~f~----------------------------------------------------------- 21 (241)
T cd02670 1 GAQNHCNVSCYLDALLFAMFA----------------------------------------------------------- 21 (241)
T ss_pred CCccccCceeehHHHHHHHHH-----------------------------------------------------------
Confidence 8899999 9999999999985
Q ss_pred CCCcCcHHHHHHHHHHHHHHHHhhhcCCCCCCCCccccccccccccceE-EEeEEEecCCCCCccccccceeeEEeeec-
Q 001479 614 DGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGR-LWSKVKCLRCSHESERYENIMDLTLEIYG- 691 (1071)
Q Consensus 614 ~g~QQDA~EFL~~LLd~Le~e~~~~~~~e~k~~~~~~~~siI~~lF~g~-l~s~ikC~~Cg~~S~~~E~f~~LsL~I~~- 691 (1071)
+|||+.|||.+|+++|+..++.. .-++|.|- ...... +...|.++.|.++...
T Consensus 22 --~q~D~~e~~~~l~~~~~~~~~~~----------------~~~~~~~g~~~~~~~-------~~~~e~~l~l~ip~~~~ 76 (241)
T cd02670 22 --EQQDPEEFFNFITDKLLMPLLEP----------------KVDIIHGGKKDQDDD-------KLVNERLLQIPVPDDDD 76 (241)
T ss_pred --HhcCHHHHHHHHHHHHhhhhhhH----------------HHHHHhcCccccccc-------cccccceEEeecccCCC
Confidence 79999999999999998643221 22444332 111110 2334566666666542
Q ss_pred -ccccHHHHHHhcCCCCcCCCCCccccccccccceeeEEEEEeecCceEEEEEeeecccc--cccccceEecCccCCCCC
Q 001479 692 -WVESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQEGR--YGKINKCITFPEMLDMMP 768 (1071)
Q Consensus 692 -~~~sLee~L~~f~~~E~LdGdnky~C~~Ck~k~~A~K~~~I~klP~ILiIqLkRF~~~~--~~KI~~~V~FPe~LDL~~ 768 (1071)
...+|++||+.|+..|. |.++|++|+||||||.... ..|+++.|.||..|||.+
T Consensus 77 ~~~~tLedcLe~~~~~e~-----------------------i~~lP~vLiIhLKRF~~~~~~~~Kl~~~I~fP~~Ldl~~ 133 (241)
T cd02670 77 GGGITLEQCLEQYFNNSV-----------------------FAKAPSCLIICLKRYGKTEGKAQKMFKKILIPDEIDIPD 133 (241)
T ss_pred CCcCCHHHHHHHHhchhh-----------------------hhhCCCeEEEEEEccccCCCcceeCCcEECCCCcCCchh
Confidence 35799999999998775 8899999999999998643 479999999999999999
Q ss_pred ccCCCC----------------------CCCCceeEEEEEEEecCCCCCCCceEEEEEECCC------------CCEEEE
Q 001479 769 FMTGTG----------------------DTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDMQ------------GTWFRI 814 (1071)
Q Consensus 769 y~~~~~----------------------~~~~~YeL~gVIvH~G~~~S~~sGHYvayVK~~d------------g~Wy~F 814 (1071)
|+.... .....|+|+|||+|.|. +.++|||+||+|... +.|++|
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~G~--s~~sGHYva~vr~~~~~~~~~~~~~~~~~W~~F 211 (241)
T cd02670 134 FVADDPRACSKCQLECRVCYDDKDFSPTCGKFKLSLCSAVCHRGT--SLETGHYVAFVRYGSYSLTETDNEAYNAQWVFF 211 (241)
T ss_pred hcccccccccccccccccccccccccCCCCCeEEEEEEEEEeCCC--CCCCcCeEEEEECCcccccccccCCCCCeEEEe
Confidence 986531 23468999999999997 677999999999864 789999
Q ss_pred cCCeeeeecCC------cccCCccEEEEEE
Q 001479 815 DDTQVHPVPMS------QVMSEGAYMLFYM 838 (1071)
Q Consensus 815 NDs~Vt~vs~e------eVls~~AYILfY~ 838 (1071)
||..|+.+... .+..+.||||||+
T Consensus 212 DD~~v~~~~~~~~~~~~~~~~~~aYmLFYq 241 (241)
T cd02670 212 DDMADRDGVSNGFNIPAARLLEDPYMLFYQ 241 (241)
T ss_pred cCcccccccccccccchhcccCCceEEEeC
Confidence 99988776432 4567899999996
No 35
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=9.2e-31 Score=311.86 Aligned_cols=309 Identities=29% Similarity=0.467 Sum_probs=248.2
Q ss_pred cCCcccccCCCcccHH--HHHHHHHcCHHHHHHHHhcccCccc-CCCchhHHHHHHHHHHHHH---hCCCCCChHHHHHH
Q 001479 531 LSPRGLLNCGNSCYAN--AVLQCLTCTKPLVIYLLRRSHSSAC-CGKDWCLMCELEQHVMMLR---ESAGPLSPGRILSH 604 (1071)
Q Consensus 531 ~gp~GL~NlGNTCYmN--SVLQ~L~sip~Fr~~Ll~~~~~~~~-~~~~~~ll~qL~kLf~~L~---ss~~~isP~~fl~~ 604 (1071)
....|..|.+++|+.| +|.|.+..+..+++..+........ ......++..+..++.... .....+.|..|...
T Consensus 230 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~p~~~~~~ 309 (587)
T KOG1864|consen 230 ERVFGTNNFSNTCCCNFQSVEEALYFCRPFREAVLLYLTSLKRSYIIKEELLTCLLDLFSSISSRKKLVGRISPTRFISD 309 (587)
T ss_pred ccccCccccCccccccchhhHHHHHhhhhhcccccchhhcccchhhhhHHHHHHhhhhccchhhhcccccccCcchhhhh
Confidence 3457999999999999 9999999998888554332211111 0112233333444443322 23356899999999
Q ss_pred HHhcccccCCCCcCcHHHHHHHHHHHHHHHHhhhcCCCC-CCCC--------------------ccccccccccccceEE
Q 001479 605 MRSISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGES-KVDP--------------------RLQETTFIQHTFGGRL 663 (1071)
Q Consensus 605 L~k~~~~F~~g~QQDA~EFL~~LLd~Le~e~~~~~~~e~-k~~~--------------------~~~~~siI~~lF~g~l 663 (1071)
+++.+..|..+.||||+||+.++++.+++.+.....+.. +..+ .....+++..+|.|++
T Consensus 310 ~~~~~~~f~~~~qQda~eF~~~l~~~~~e~~~~~~~~~~~~~~~~~~~gn~~~~~~~~~~~~~~~~~~~~~v~~lf~g~l 389 (587)
T KOG1864|consen 310 LIKENELFTNGMQQDAHEFLNFLLNEISETLERESSGTTTKVSPKESDGNSSTSAASWTNKGHHKSLRENWVSKLFQGIL 389 (587)
T ss_pred hhhcCCccCchhhccHHHHhhhhccchhhhhhhhccCCcccccccCCCCccccccccccccccccccchhHHHHhhcCee
Confidence 999999999999999999999999999886544331111 1110 0124578999999999
Q ss_pred EeEEEecCCCCCccccccceeeEEeeec-ccccHHHHHHhcCCCCcCCCCCccccccccccceeeEEEEEeecCceEEEE
Q 001479 664 WSKVKCLRCSHESERYENIMDLTLEIYG-WVESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIV 742 (1071)
Q Consensus 664 ~s~ikC~~Cg~~S~~~E~f~~LsL~I~~-~~~sLee~L~~f~~~E~LdGdnky~C~~Ck~k~~A~K~~~I~klP~ILiIq 742 (1071)
..+.+|..|+..+.+.+.|.+++++++. ...++..+|..|..+|.+.|+++|.|++|...+.|.+.+.++.+|.+|+||
T Consensus 390 ~~et~Clsc~t~T~~de~f~D~~~~v~~de~~si~~~l~~~~~~e~l~g~nky~c~~c~s~qeae~~l~~k~lp~~L~l~ 469 (587)
T KOG1864|consen 390 TNETRCLSCETITSRDEGFLDLSVAVEIDENTSITNLLKSFSSTETLSGENKYSCENCCSLQEAERRLKIKKLPYVLTLH 469 (587)
T ss_pred eeeeeeccccccccccccccccceeccccccccHHHHHHHhcchhhccCCCcccccccCchhhHHHhccccCCcceeeee
Confidence 9999999999999999999999999984 468999999999999999999999999999999999999999999999999
Q ss_pred Eeeecccc----cccccceEecCccCCCCCccCCCCCCCCceeEEEEEEEecCCCCCCCceEEEEEECCCCCEEEEcCCe
Q 001479 743 LKRFQEGR----YGKINKCITFPEMLDMMPFMTGTGDTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDMQGTWFRIDDTQ 818 (1071)
Q Consensus 743 LkRF~~~~----~~KI~~~V~FPe~LDL~~y~~~~~~~~~~YeL~gVIvH~G~~~S~~sGHYvayVK~~dg~Wy~FNDs~ 818 (1071)
||||.++. ..|+...|.+|.+|++.............|.|+|||+|.|. +.+.|||+||+|..+-.|++|||..
T Consensus 470 Lkrfk~~~~~~~~~kl~~~v~~plel~l~~~~~~~~~~~~~Y~L~avVvH~G~--~p~~GHYia~~r~~~~nWl~fdD~~ 547 (587)
T KOG1864|consen 470 LKRFKYSEQQNRYTKLLYRVVFPLELRLKDTLKDDNNPDRKYDLVAVVVHLGS--TPNRGHYVAYVKSLDFNWLLFDDDN 547 (587)
T ss_pred hhccccccccccccccccccccccceeeccccccccCccceeeEEEEEEeccC--CCCCcceEEEEeeCCCCceeccccc
Confidence 99997652 36899999999999997666655544579999999999998 8899999999998444599999999
Q ss_pred eeeecCCcccC---CccEEEEEEEcC
Q 001479 819 VHPVPMSQVMS---EGAYMLFYMRSC 841 (1071)
Q Consensus 819 Vt~vs~eeVls---~~AYILfY~R~s 841 (1071)
|..++.+.|.. ..+|+++|.+.-
T Consensus 548 V~~~s~~~v~~~~~~s~~~~~~~~~~ 573 (587)
T KOG1864|consen 548 VEPISEEPVSEFTGSSGDTLFYYVQV 573 (587)
T ss_pred ccccCcchhhhccCCCccceeeeEEe
Confidence 99998888764 468888887764
No 36
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=2.1e-27 Score=268.69 Aligned_cols=295 Identities=24% Similarity=0.259 Sum_probs=230.6
Q ss_pred cCCcccccCCCcccHHHHHHHHHcCHHHHHHHHhcccCcccCC---CchhHHHHHHHHHHHHHhCCCCCChHHHHHHHHh
Q 001479 531 LSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCG---KDWCLMCELEQHVMMLRESAGPLSPGRILSHMRS 607 (1071)
Q Consensus 531 ~gp~GL~NlGNTCYmNSVLQ~L~sip~Fr~~Ll~~~~~~~~~~---~~~~ll~qL~kLf~~L~ss~~~isP~~fl~~L~k 607 (1071)
.-|+||.|+|||||||+.+|+|..+|+++..+........... ...-+..+++.+|+.|.+. ..+.|..++..+.+
T Consensus 103 ~lp~gl~nlgNtcymnrtVq~lk~v~el~~~~s~~~~~~~~~~t~~~a~~i~~~mR~~f~~~~~~-~~v~pi~llqtl~~ 181 (473)
T KOG1872|consen 103 PLPVGLPNLGNTCYMNRTVQCLKGVPELPDALSLYKRKRGRGDTWERRRRISIETRTCFRPLCEK-GAVAPINLLQTLSS 181 (473)
T ss_pred cCCccccchhHHHHhhhhhhhhhcCccCcchhhccchhccCCchhhhhhhHHHHHHHHHHhhhcc-CCcchHHHHHHHHH
Confidence 5578999999999999999999999999877755432222111 1455788899999999988 99999999999999
Q ss_pred cccccCC------CCcCcHHHHHHHHHHHHHHHHhhhcCCCCCCCCccccccccccccceEEEeEEEecCCCCCccc--c
Q 001479 608 ISCQIGD------GSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESER--Y 679 (1071)
Q Consensus 608 ~~~~F~~------g~QQDA~EFL~~LLd~Le~e~~~~~~~e~k~~~~~~~~siI~~lF~g~l~s~ikC~~Cg~~S~~--~ 679 (1071)
..++|.. ..||||.|++..++-.++..+... .... ....++..+|++.+.....|.+-...... .
T Consensus 182 ~~Pqfa~~~~~g~~~qqda~ec~~~~m~~l~~~~~~~----~~~~---~~~~~~d~~f~~~~~~t~~~~e~e~~~~~~~~ 254 (473)
T KOG1872|consen 182 QYPQFAEWVEYGIYMQQDAAECWMEEPGMLTEALTVA----TEAP---CLEAEAAAGFGAEFSTTMSCSEGEDEGGGAGR 254 (473)
T ss_pred HhHHHHHHhhhhhHHHHHHhHhHHHhhhheecccccc----cccc---chhHHHHHhhccccccceeeccCccccccccc
Confidence 9888865 689999999999999887643211 1110 33457889999999999999988777444 7
Q ss_pred ccceeeEEeeecccccHHHHHHhcCCCCcCCCCCccccccccccceeeEEEEEeecCceEEEEEeeecccc----ccccc
Q 001479 680 ENIMDLTLEIYGWVESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQEGR----YGKIN 755 (1071)
Q Consensus 680 E~f~~LsL~I~~~~~sLee~L~~f~~~E~LdGdnky~C~~Ck~k~~A~K~~~I~klP~ILiIqLkRF~~~~----~~KI~ 755 (1071)
|.|..|.+.|......+...|..=+..+... ..+..+..-.-.|.+.|..+|++|+|+..||.+.. ..|+-
T Consensus 255 E~~~~L~c~i~~~~~~~k~Gl~~~~~e~~~K-----~s~~lgr~a~y~k~~~isrlP~ylTvq~vrf~~k~k~~~~akil 329 (473)
T KOG1872|consen 255 ELVDQLKCIINKTVHDMRFGLKSGLSEEIQK-----ISSILGRPAAYQKVMYISRLPEYLTVQEVRFFSKAKIMVVAKIL 329 (473)
T ss_pred ccccccceEEeeeechhhhhhhhhhhhhhhc-----cCcccCCChHHHHHhHhhcCcccceEEEEEEEeccccchHHHHH
Confidence 8999999999887777777776555433321 22233333344566789999999999999997543 35888
Q ss_pred ceEecCccCCCCCccCCCC-------------------------------------------------CC-CCceeEEEE
Q 001479 756 KCITFPEMLDMMPFMTGTG-------------------------------------------------DT-PPLYMLYSV 785 (1071)
Q Consensus 756 ~~V~FPe~LDL~~y~~~~~-------------------------------------------------~~-~~~YeL~gV 785 (1071)
+.|.||..||...++..+. .. ...|+|.||
T Consensus 330 ~~V~fP~~ld~~d~ct~el~~k~~~~r~k~r~~edkk~~~~~~~k~~~~~~~~~~~~~e~~~~~~~~~s~~~g~y~l~~v 409 (473)
T KOG1872|consen 330 NAVNFPKDLDQQDLCTPELKKKLLCRRKKHRKVEDKKKEEDVMPKVKGAQERLKEVPLEGMYNKSGGKSRNSGLYDLQLV 409 (473)
T ss_pred HhccChhhhhHHHhhCHHhhcCccchHHHHHHHHhcCCchhhcccccCcCcccccccccchhccccccccccceeeeeEe
Confidence 8999999999887765320 02 568999999
Q ss_pred EEEecCCCCCCCceEEEEEECCCCCEEEEcCCeeeeecCCcccC-------CccEEEEEEEc
Q 001479 786 VVHLDTQNASFSGHYVSYIKDMQGTWFRIDDTQVHPVPMSQVMS-------EGAYMLFYMRS 840 (1071)
Q Consensus 786 IvH~G~~~S~~sGHYvayVK~~dg~Wy~FNDs~Vt~vs~eeVls-------~~AYILfY~R~ 840 (1071)
|.|.|. +..+|||++++|...+.|++|||..|+.+..+.++. ..||||+|.-+
T Consensus 410 ithkgr--ss~sghy~aw~r~s~~~w~~fdd~~vs~v~~e~i~~lsgggd~~~ayvllyk~~ 469 (473)
T KOG1872|consen 410 ITHKGR--SSKSGHYVAWNRVSEDKWGHFDDDMVSFVLGETILSLSGGGDWHSAYVLLYKAR 469 (473)
T ss_pred eecccc--ccCCCcceEEEeccCCceeeccccccccccccceeeecCCCccchhhheeeccc
Confidence 999999 888999999999988899999999999998888875 36999999854
No 37
>KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=9.2e-26 Score=249.69 Aligned_cols=303 Identities=26% Similarity=0.347 Sum_probs=220.3
Q ss_pred cCCcccccCCCcccHHHHHHHHHcCHHHHHHHHhcccCc-ccCCCchhHHHHHHHHHHHHHh------------------
Q 001479 531 LSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSS-ACCGKDWCLMCELEQHVMMLRE------------------ 591 (1071)
Q Consensus 531 ~gp~GL~NlGNTCYmNSVLQ~L~sip~Fr~~Ll~~~~~~-~~~~~~~~ll~qL~kLf~~L~s------------------ 591 (1071)
..|+|+.|-||-|||||+||+|+.|++|.+.+....... ........++.++..+......
T Consensus 26 i~Prg~ink~n~c~~ns~Lqal~~c~pfy~l~~~i~~~~~~~~~~stp~lda~~~~~~df~n~~~~k~~r~N~~~~~~~~ 105 (420)
T KOG1871|consen 26 IDPRGSINKCNICFMNSILQALLYCSPFYNLLELIKRADGTVKEGSTPLLDASRPASSDFNNDSDAKLPRKNSLRVPEHV 105 (420)
T ss_pred cCCccccccceeEeeHHHHHHHHhCccHHHHHHhhhhhcCceecccchhHHHHHHHHhhccccchhhhhhhccCCccccc
Confidence 678999999999999999999999999998774432111 1111122333333333322210
Q ss_pred -----------CCCCCChHHHHHHHHhcc--cccCCCCcCcHHHHHHHHHHHHHHHHhhhcC------------------
Q 001479 592 -----------SAGPLSPGRILSHMRSIS--CQIGDGSQEDAHEFLRLLVASMQSICLERHG------------------ 640 (1071)
Q Consensus 592 -----------s~~~isP~~fl~~L~k~~--~~F~~g~QQDA~EFL~~LLd~Le~e~~~~~~------------------ 640 (1071)
....+-|..+...+.... ....+|+|+||.||+.++||.|++++.+...
T Consensus 106 ~~~ses~~~d~~~dav~~d~~~~~l~t~~~~e~~~~g~qedAeefl~~~ld~lhee~~~v~~~~~~~n~e~t~~~~i~~~ 185 (420)
T KOG1871|consen 106 VEKSESNKSDLQGDAVKPDPIYLDLLTMSRFESLQVGKQEDAEEFLLDNLDFLHEESSEVPTELVPPNDEFTPRGLINNG 185 (420)
T ss_pred cchhhhhhhcccCccccCCchhhhcccCCchhhccccccccHHHHHHHHHhhhhHHHHhhhhhhcCCccccccccccccc
Confidence 011233333333333222 3456799999999999999999998643210
Q ss_pred ----CCCCCCC----------------------ccccccccccccceEEEeEEEecCCCCCccccccceeeEEeeec-cc
Q 001479 641 ----GESKVDP----------------------RLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEIYG-WV 693 (1071)
Q Consensus 641 ----~e~k~~~----------------------~~~~~siI~~lF~g~l~s~ikC~~Cg~~S~~~E~f~~LsL~I~~-~~ 693 (1071)
.....++ ..-..++|.++|+|+++..+.-.. .+++...+||..|+|+|.. ..
T Consensus 186 n~~n~~s~~e~~~~~~~~~~~~gk~~k~~i~r~~~~~~spiS~ifgg~~rs~l~~~~-nkeS~tlqPF~tlqldiq~~~i 264 (420)
T KOG1871|consen 186 NLCNLDSTEEAGLSESSGVQLLGKIQKTDIPRADSFVRSPISEIFGGQLRSVLYQPS-NKESATLQPFFTLQLDIQSEKI 264 (420)
T ss_pred ccccccchhhcccccCchhhhcCCcccCccCCCCCcccCcHHHhhccccccceeccc-cccccccCccceeeeeeecccc
Confidence 0000000 001347789999999998887643 5667899999999999963 36
Q ss_pred ccHHHHHHhcCCCCcCCCCCccccccccccceeeEEEEEeecCceEEEEEeeecc---cccccccceEecCccCCCCCcc
Q 001479 694 ESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQE---GRYGKINKCITFPEMLDMMPFM 770 (1071)
Q Consensus 694 ~sLee~L~~f~~~E~LdGdnky~C~~Ck~k~~A~K~~~I~klP~ILiIqLkRF~~---~~~~KI~~~V~FPe~LDL~~y~ 770 (1071)
.+.+++|+.+...|.+.+ |.-. -+..+.+.+++.+.++|.+|++||+||.+ +...|+.+.|++|-.|.+..-+
T Consensus 265 ~sv~~ales~~~re~lp~---~st~-s~~eV~~s~q~~leklp~vlilhlkrF~ye~tgg~~k~~K~i~~~~~l~i~~~~ 340 (420)
T KOG1871|consen 265 HSVQDALESLVARESLPG---YSTK-SGQEVEASSQTTLEKLPPVLILHLKRFVYEKTGGARKLGKKIEYPWTLKISKNC 340 (420)
T ss_pred CCHHHHhhccChhhcccc---eecC-CCCeechhhhhhHhhcchhhhhhhhHHHHHhccchhhhchhhhccceeeechhh
Confidence 799999999999999986 4443 67888899999999999999999999964 4557999999999777775433
Q ss_pred C------CCCCCCCceeEEEEEEEecCCCCCCCceEEEEEECC-CCCEEEEcCCeeeeecCCcccC----CccEEEEEEE
Q 001479 771 T------GTGDTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDM-QGTWFRIDDTQVHPVPMSQVMS----EGAYMLFYMR 839 (1071)
Q Consensus 771 ~------~~~~~~~~YeL~gVIvH~G~~~S~~sGHYvayVK~~-dg~Wy~FNDs~Vt~vs~eeVls----~~AYILfY~R 839 (1071)
. ....-...|+|.+||.|.|. ++..|||..-+.+. -+.|+++||..|..+..++|.+ ..+|+|.|+|
T Consensus 341 ~s~gvk~~~~~~~~~yks~~vvyhtgt--satvghYl~dv~~s~~~gw~rIDD~~i~~v~q~dv~~~t~~r~~yllyY~~ 418 (420)
T KOG1871|consen 341 FSQGLKIRILIATRPYKSLAVVYHTGT--SATVGHYLEDVSRSVPSGWQRIDDALILFVAQEDVEKVTGSRTPYLLYYIE 418 (420)
T ss_pred hccccchhhhccccccceEEEEEeccc--ccccCceEEeeeecccCceeEeccceeeeccHhhhccccCccchheeEeee
Confidence 2 11234578999999999999 88899999999763 4679999999999999888875 4699999998
Q ss_pred c
Q 001479 840 S 840 (1071)
Q Consensus 840 ~ 840 (1071)
.
T Consensus 419 ~ 419 (420)
T KOG1871|consen 419 A 419 (420)
T ss_pred c
Confidence 5
No 38
>KOG2026 consensus Spindle pole body protein - Sad1p [Cytoskeleton]
Probab=99.83 E-value=2e-20 Score=206.77 Aligned_cols=282 Identities=23% Similarity=0.326 Sum_probs=216.4
Q ss_pred cCCcccccCCCcccHHHHHHHHHcCHHHHHHHHhcccCcccCCCchhHHHHHHHHHHHHHhCC---CCCChHHHHHHHHh
Q 001479 531 LSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESA---GPLSPGRILSHMRS 607 (1071)
Q Consensus 531 ~gp~GL~NlGNTCYmNSVLQ~L~sip~Fr~~Ll~~~~~~~~~~~~~~ll~qL~kLf~~L~ss~---~~isP~~fl~~L~k 607 (1071)
+|.+||.|+-++=|+|++||+|.+.+++|+|++.... ..+....+...|..+++.||+.. ..++|.++++++-.
T Consensus 132 pG~VGLnNik~~dy~n~vl~~ls~v~PlRnyFl~~~n---~~d~~~~lv~rl~~l~rklw~~r~fk~hvSphe~lqaV~~ 208 (442)
T KOG2026|consen 132 PGFVGLNNIKANDYANAVLQALSHVVPLRNYFLLEEN---YFDNLTELVQRLGELIRKLWNPRNFKGHVSPHEFLQAVMK 208 (442)
T ss_pred eeeeccchhhhHHHHHHHHHHHhccchhhhhhccccc---ccchhHHHHHHHHHHHHHhcChhhhcccCCHHHHHHHHHH
Confidence 7889999999999999999999999999999987532 12334567888899999999754 57999999998866
Q ss_pred cc-cccCCCCcCcHHHHHHHHHHHHHHHHhhhcCCCCCCCCccccccccccccceEEEeEEEecC--CCCC--ccccccc
Q 001479 608 IS-CQIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLR--CSHE--SERYENI 682 (1071)
Q Consensus 608 ~~-~~F~~g~QQDA~EFL~~LLd~Le~e~~~~~~~e~k~~~~~~~~siI~~lF~g~l~s~ikC~~--Cg~~--S~~~E~f 682 (1071)
.. ..|..++|-|+.|||.+||+.|+..+ ++.. ...++|++.|+|.++...+=.. -+.+ ....-+|
T Consensus 209 ~s~k~f~i~~q~DpveFlswllntlhs~l----~~~k------~~~SIi~~~fqG~~ri~k~~~~~~~~~~~~~i~~~~F 278 (442)
T KOG2026|consen 209 LSKKRFRIGQQSDPVEFLSWLLNTLHSDL----RGSK------KASSIIHKSFQGEVRIVKEKQGEASENENKEISVMPF 278 (442)
T ss_pred HhhhheecCCCCCHHHHHHHHHHHHHHHh----CCCC------CchhHhhHhhcceEEeeeeccccccccccceEEEEee
Confidence 54 67999999999999999999999754 2221 3458999999999876654332 1111 2334589
Q ss_pred eeeEEeeecc-------------cccHHHHHHhcCCCCcCCCCCccccccccccceeeEEEEEeecCceEEEEEeeeccc
Q 001479 683 MDLTLEIYGW-------------VESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQEG 749 (1071)
Q Consensus 683 ~~LsL~I~~~-------------~~sLee~L~~f~~~E~LdGdnky~C~~Ck~k~~A~K~~~I~klP~ILiIqLkRF~~~ 749 (1071)
+.|+|++|.. ...|.+.|..|.....-+ + .....+ ++.++.++|++||+|++||..+
T Consensus 279 l~LtLDLP~~plfkD~~e~niiPQV~l~~lL~Kf~g~t~~e----~-----~~~~~~-~rf~l~k~P~ylifh~~rF~kN 348 (442)
T KOG2026|consen 279 LYLTLDLPPPPLFKDVMEKNIIPQVALFDLLKKFDGETVTE----V-----VTPKLA-MRFRLTKLPRYLIFHMKRFKKN 348 (442)
T ss_pred EEEEecCCCCCcccchhhhcccccchHHHHHHHhcCceeee----e-----cchhhh-hheeeecCCceEEEEeeecccc
Confidence 9999999842 247888888886543322 1 112223 7889999999999999999876
Q ss_pred cc--ccccceEecC-ccCCCCCccCC---CCCCCCceeEEEEEEEecCCCCCCCceEEEEEECC-CCCEEEEcCCeeeee
Q 001479 750 RY--GKINKCITFP-EMLDMMPFMTG---TGDTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDM-QGTWFRIDDTQVHPV 822 (1071)
Q Consensus 750 ~~--~KI~~~V~FP-e~LDL~~y~~~---~~~~~~~YeL~gVIvH~G~~~S~~sGHYvayVK~~-dg~Wy~FNDs~Vt~v 822 (1071)
++ .|+.+.++|| ..+|+.+++.. ....-..|.|.|-++|... -|||...|++. .++||..+|-.|++.
T Consensus 349 n~f~ekNpTl~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~i~~~e-----~~~~riqi~~~~s~kW~eiqdl~v~e~ 423 (442)
T KOG2026|consen 349 NFFKEKNPTLVEFPYSEVDILHVLDRLKAVNHKVTQYSLVANAIHEDE-----DGNFRIQIYDNSSEKWYEIQDLHVTER 423 (442)
T ss_pred CcccccCCceeeccCCccchhhhhhhcccccCccccccchhhhhcCcc-----cCceEEEEEeCCCcceEEecccchhhh
Confidence 65 6899999999 66776655442 2223378999999999743 59999999864 678999999999999
Q ss_pred cCCcccCCccEEEEEEEc
Q 001479 823 PMSQVMSEGAYMLFYMRS 840 (1071)
Q Consensus 823 s~eeVls~~AYILfY~R~ 840 (1071)
..+-+.-..+||-+|++.
T Consensus 424 ~~qmi~L~Es~iQiwe~~ 441 (442)
T KOG2026|consen 424 LPQMIFLKESFIQIWEKQ 441 (442)
T ss_pred hhHHHHHHHHHHHHHhcc
Confidence 887777778888888764
No 39
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=99.76 E-value=4.3e-18 Score=202.74 Aligned_cols=302 Identities=19% Similarity=0.304 Sum_probs=215.3
Q ss_pred ccccCCcCCcccccCCCcccHHHHHHHHHcCHHHHHHHHhcccCcccCCCchhHHHHHHHHHHHHHh-CCCCCChHHHHH
Q 001479 525 YEVIDLLSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRE-SAGPLSPGRILS 603 (1071)
Q Consensus 525 ~~~~~~~gp~GL~NlGNTCYmNSVLQ~L~sip~Fr~~Ll~~~~~~~~~~~~~~ll~qL~kLf~~L~s-s~~~isP~~fl~ 603 (1071)
...++...++||.-.+-.-|.|++||+|+++|++|..++.+. +....|++|+|..||.+|.. .+.++...+|++
T Consensus 491 F~~~NqT~yaGLe~~i~N~YcNamiQllyfl~~~r~~vl~H~-----C~~e~CL~CELGFLF~Ml~~S~G~~Cqa~NFlr 565 (1118)
T KOG1275|consen 491 FQDYNQTTYAGLETDIPNSYCNAMIQLLYFLPPIRSIVLRHI-----CTKEFCLLCELGFLFTMLDSSTGDPCQANNFLR 565 (1118)
T ss_pred CcccccceeeccCCCCchHHHHHHHHHHHhccHHHHHHHcCc-----cchhHHHHHHHHHHHHHHhhhcCCccchhHHHH
Confidence 334444778999999999999999999999999999999863 67789999999999999974 456889999999
Q ss_pred HHHhcccccCCC----------------CcCcHHHHHHHHHHHHHHH--HhhhcCCCCCCC---CccccccccccccceE
Q 001479 604 HMRSISCQIGDG----------------SQEDAHEFLRLLVASMQSI--CLERHGGESKVD---PRLQETTFIQHTFGGR 662 (1071)
Q Consensus 604 ~L~k~~~~F~~g----------------~QQDA~EFL~~LLd~Le~e--~~~~~~~e~k~~---~~~~~~siI~~lF~g~ 662 (1071)
+++.....-..| --|||..|..-..++...- |..-.. ....+ ........+.+.|+-.
T Consensus 566 af~t~~~a~~LG~vl~d~~~~~~~~~~~liq~~~~~~~set~~~~d~~~~~~~~~-s~~~~~~~~~vn~~~~l~q~F~~~ 644 (1118)
T KOG1275|consen 566 AFRTNPEASALGLVLSDTQISGTVNDDVLIQDAEGFISSETSRHLDCQDCRGLQQ-SESVDGESFKVNYAPVLQQSFCQE 644 (1118)
T ss_pred HHhhChHhhhhcccccchhhccccchHHHhhhhhhccchhhhhhhhHHHhhhhhh-hhcccCceeeecchhHHHHHhhhH
Confidence 987765322211 1234443333222221110 000000 00111 1122345899999999
Q ss_pred EEeEEEecCCCCCccccccceeeEEeeecc--------cccHHHHHHhcCCCCcCCCCCccccccccccceeeEEEEEee
Q 001479 663 LWSKVKCLRCSHESERYENIMDLTLEIYGW--------VESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHE 734 (1071)
Q Consensus 663 l~s~ikC~~Cg~~S~~~E~f~~LsL~I~~~--------~~sLee~L~~f~~~E~LdGdnky~C~~Ck~k~~A~K~~~I~k 734 (1071)
++....|..|+..+.+......+.+..++. ...+.+.|.+-...+.-. +-+|+.|++......+..+..
T Consensus 645 ~e~~~~Cg~C~~~~~~~k~l~~~~lsyp~~~~id~~~~~~~F~~iL~R~l~l~kn~---~~~C~~C~k~ep~~q~~~vr~ 721 (1118)
T KOG1275|consen 645 IEKSLRCGECGDEKQKSKSLLRKVLSYPNVLLIDTLAKSNNFVEILKRSLSLFKNK---QAWCETCTKPEPTSQKKNVRS 721 (1118)
T ss_pred HHHhhhcccccchhhhhhhhhheeecCCCccchhhcccccchHHHhhhhhhccccc---ccccccccCCCCccccccccc
Confidence 999999999999977766666666666542 124455555443322221 268999999999999999999
Q ss_pred cCceEEEEEeeeccccc------ccccceEecCccCCCCCccCCC------------------CCCCCceeEEEEEEEec
Q 001479 735 APNILTIVLKRFQEGRY------GKINKCITFPEMLDMMPFMTGT------------------GDTPPLYMLYSVVVHLD 790 (1071)
Q Consensus 735 lP~ILiIqLkRF~~~~~------~KI~~~V~FPe~LDL~~y~~~~------------------~~~~~~YeL~gVIvH~G 790 (1071)
+|++|.|...-+..+.+ .|....|++|+.+.|...-... ...-..|+|.|+|+|.|
T Consensus 722 LPd~L~in~~~~~~~~~~~~a~q~~~~~~vWLP~~~~~~~~k~~~~~v~~~s~~~~~~~~~~d~~~~~vYeL~a~V~~I~ 801 (1118)
T KOG1275|consen 722 LPDCLSINTCLNVHELVDFWARQNKLLEDVWLPEWFHMIISKNKAQLVSTISDLDVSPLPDYDEPSAVVYELDAMVHAIG 801 (1118)
T ss_pred CcceeeeeeeccchhhhhhHHHhhccccccccchheeEEEecccceeeeeeccccCCCCccccCCceEEEEeeeEEEEec
Confidence 99999999888753211 3677889999888876442211 11236899999999999
Q ss_pred CCCCCCCceEEEEEECC---------CCCEEEEcCCeeeeecCCcccC-----CccEEEEE
Q 001479 791 TQNASFSGHYVSYIKDM---------QGTWFRIDDTQVHPVPMSQVMS-----EGAYMLFY 837 (1071)
Q Consensus 791 ~~~S~~sGHYvayVK~~---------dg~Wy~FNDs~Vt~vs~eeVls-----~~AYILfY 837 (1071)
+ +-+.+|.|++||.. +.+||+|||.-|.++++++.+. +.+-||+|
T Consensus 802 d--~~~e~~lVs~Ikv~~~~~~~~~~dsqWylFNDfLV~~ite~EAl~~~~~WKvP~Il~Y 860 (1118)
T KOG1275|consen 802 D--NENEVNLVSPIKVLRPYHVIKPDDSQWYLFNDFLVSEITEEEALHFDGPWKVPAILYY 860 (1118)
T ss_pred c--CCCccceEEEEEccCcccccCcCcceeEEEcceeeeeCChHHheEeccCccCcEEEEE
Confidence 8 55689999999852 3699999999999999988764 56999999
No 40
>PF01753 zf-MYND: MYND finger; InterPro: IPR002893 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MYND-type zinc finger domains. The MYND domain (myeloid, Nervy, and DEAF-1) is present in a large group of proteins that includes RP-8 (PDCD2), Nervy, and predicted proteins from Drosophila, mammals, Caenorhabditis elegans, yeast, and plants [, , ]. The MYND domain consists of a cluster of cysteine and histidine residues, arranged with an invariant spacing to form a potential zinc-binding motif []. Mutating conserved cysteine residues in the DEAF-1 MYND domain does not abolish DNA binding, which suggests that the MYND domain might be involved in protein-protein interactions []. Indeed, the MYND domain of ETO/MTG8 interacts directly with the N-CoR and SMRT co-repressors [, ]. Aberrant recruitment of co-repressor complexes and inappropriate transcriptional repression is believed to be a general mechanism of leukemogenesis caused by the t(8;21) translocations that fuse ETO with the acute myelogenous leukemia 1 (AML1) protein. ETO has been shown to be a co-repressor recruited by the promyelocytic leukemia zinc finger (PLZF) protein []. A divergent MYND domain present in the adenovirus E1A binding protein BS69 was also shown to interact with N-CoR and mediate transcriptional repression []. The current evidence suggests that the MYND motif in mammalian proteins constitutes a protein-protein interaction domain that functions as a co-repressor-recruiting interface. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3QWW_A 3QWV_A 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3RU0_A ....
Probab=98.69 E-value=4.6e-09 Score=82.18 Aligned_cols=37 Identities=62% Similarity=1.218 Sum_probs=33.7
Q ss_pred cccccccCccccccCCCceecchhhhhhhchHhhHHhc
Q 001479 159 CARCFAPATTRCSRCKSVRYCSGKCQIIHWRQVHKQEC 196 (1071)
Q Consensus 159 C~~Cg~~~~~~Cs~Ck~v~YCs~~CQ~~dW~~~HK~~C 196 (1071)
|..|++++..+|++|+.|+|||++||++||. .||.+|
T Consensus 1 C~~C~~~~~~~C~~C~~~~YCs~~Cq~~~w~-~Hk~~C 37 (37)
T PF01753_consen 1 CAVCGKPALKRCSRCKSVYYCSEECQRADWP-YHKFEC 37 (37)
T ss_dssp -TTTSSCSSEEETTTSSSEESSHHHHHHHHH-HHCCTH
T ss_pred CcCCCCCcCCcCCCCCCEEecCHHHHHHHHH-HHhhhC
Confidence 7889998888999999999999999999997 699887
No 41
>PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase
Probab=98.60 E-value=7.4e-08 Score=103.79 Aligned_cols=133 Identities=20% Similarity=0.476 Sum_probs=86.4
Q ss_pred cccccccccceEEEeEEEecCCCCCcc-ccccceeeEEeeecccccHHHHHHhcCCCCcCCCCCccccccccccceeeEE
Q 001479 651 ETTFIQHTFGGRLWSKVKCLRCSHESE-RYENIMDLTLEIYGWVESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQ 729 (1071)
Q Consensus 651 ~~siI~~lF~g~l~s~ikC~~Cg~~S~-~~E~f~~LsL~I~~~~~sLee~L~~f~~~E~LdGdnky~C~~Ck~k~~A~K~ 729 (1071)
....+.++|...+.-...|..||+... +.... ..++...+-.|.. +.-.+---|.+|+.+. ..++
T Consensus 119 ~d~~~E~lF~~sf~WeFeC~~Cg~~~~~R~~K~----------L~TFtnv~pdwhP---LnA~h~~pCn~C~~ks-Q~rk 184 (275)
T PF15499_consen 119 LDPWIEKLFLYSFSWEFECSQCGHKYQNRCTKT----------LVTFTNVIPDWHP---LNAVHFGPCNSCNSKS-QRRK 184 (275)
T ss_pred cchHHHhHhheeeEEEEEccccCChhhhhheee----------ecccCCCCCCCCc---ccccccCCCcccCChH-HhHh
Confidence 446688999999999999999998732 21110 0111111111211 1111124599998755 4566
Q ss_pred EEEeecCceEEEEEeeecccccccccceEecCccCCCCCccCCCCCCCCceeEEEEEEEecCCCCCCCceEEEEEECCCC
Q 001479 730 LSIHEAPNILTIVLKRFQEGRYGKINKCITFPEMLDMMPFMTGTGDTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDMQG 809 (1071)
Q Consensus 730 ~~I~klP~ILiIqLkRF~~~~~~KI~~~V~FPe~LDL~~y~~~~~~~~~~YeL~gVIvH~G~~~S~~sGHYvayVK~~dg 809 (1071)
+.+.++|+++++|+. .|- |.. ||..|--.- ....|++.+||-+.-. --|+|+++++.+|
T Consensus 185 Mvlekv~~vfmLHFV---eGL----------P~n-dl~~ysF~f--eg~~Y~Vt~VIQY~~~-----~~HFvtWi~~~dG 243 (275)
T PF15499_consen 185 MVLEKVPPVFMLHFV---EGL----------PHN-DLQHYSFHF--EGCLYQVTSVIQYQAN-----LNHFVTWIRDSDG 243 (275)
T ss_pred hhhhcCchhhhhhhh---ccC----------Ccc-CCCccceee--cCeeEEEEEEEEEecc-----CceeEEEEEcCCC
Confidence 889999999999953 332 211 222221111 2468999999999864 5899999999999
Q ss_pred CEEEEcCCe
Q 001479 810 TWFRIDDTQ 818 (1071)
Q Consensus 810 ~Wy~FNDs~ 818 (1071)
.|..+||-+
T Consensus 244 sWLecDDLk 252 (275)
T PF15499_consen 244 SWLECDDLK 252 (275)
T ss_pred CeEeeccCC
Confidence 999999976
No 42
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]
Probab=98.26 E-value=2.1e-07 Score=101.21 Aligned_cols=42 Identities=48% Similarity=1.145 Sum_probs=38.0
Q ss_pred cccccccccC-ccccccCCCceecchhhhhhhchHhhHHhcHhh
Q 001479 157 QLCARCFAPA-TTRCSRCKSVRYCSGKCQIIHWRQVHKQECQQL 199 (1071)
Q Consensus 157 ~~C~~Cg~~~-~~~Cs~Ck~v~YCs~~CQ~~dW~~~HK~~C~~~ 199 (1071)
..|..||.++ .+||+.||+|.||+++||+-||. .||+.|..+
T Consensus 320 ~fCstCG~~ga~KrCs~CKav~YCdqeCQk~hWf-~HKK~C~~L 362 (396)
T KOG1710|consen 320 QFCSTCGHPGAKKRCSQCKAVAYCDQECQKFHWF-IHKKVCSFL 362 (396)
T ss_pred ccccccCCCCccchhhhhHHHHHHHHHHHHhhhH-HHHHHHHHH
Confidence 4799999855 47999999999999999999999 599999977
No 43
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.18 E-value=0.0098 Score=73.06 Aligned_cols=99 Identities=23% Similarity=0.327 Sum_probs=57.3
Q ss_pred cccCCCcccHHHHHHHHHcCHHHHHHHHhcc---cCccc-----CCCchhHHHHHHHHHHHH---HhC-----CCCCChH
Q 001479 536 LLNCGNSCYANAVLQCLTCTKPLVIYLLRRS---HSSAC-----CGKDWCLMCELEQHVMML---RES-----AGPLSPG 599 (1071)
Q Consensus 536 L~NlGNTCYmNSVLQ~L~sip~Fr~~Ll~~~---~~~~~-----~~~~~~ll~qL~kLf~~L---~ss-----~~~isP~ 599 (1071)
|.|.||+||.||+||+|..+|+|+..+.... ..... ........+..+.+-.-+ ... .-.++..
T Consensus 34 l~n~gn~cy~ns~~Q~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 113 (587)
T KOG1864|consen 34 LVNTGNSCYYNSTLQALSSCPPFVSRVEQLPRLVRPKIEALKDSLNRKKTRIFDEKSLEAVTLNFSKNSSSNESFNLSVT 113 (587)
T ss_pred EeecCCchhhhhHHHHHhhccHHHHHHHHHHHhcccccccCchhhccccccchhHHHHHHHHHhhhccCCccccccchHH
Confidence 9999999999999999999999997664321 11100 001111111221111111 111 1112333
Q ss_pred HHHHHHHhc---ccccCCCCcCcHHHHHHHHHHHHHHH
Q 001479 600 RILSHMRSI---SCQIGDGSQEDAHEFLRLLVASMQSI 634 (1071)
Q Consensus 600 ~fl~~L~k~---~~~F~~g~QQDA~EFL~~LLd~Le~e 634 (1071)
.+...+... ...|....|+||++|+.-|+-.+...
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~l~~~~~~~ 151 (587)
T KOG1864|consen 114 QLVQSRLNNGKKYAEFNNNDQRDAHNFLLELMAMVDDV 151 (587)
T ss_pred HHHHHHhhhhhhhhhhhcccHhhhhhhhhhhhHHHhhh
Confidence 333333322 35688899999999999998877654
No 44
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=95.57 E-value=0.0029 Score=74.76 Aligned_cols=42 Identities=36% Similarity=0.902 Sum_probs=36.9
Q ss_pred cccccccccCccccccCCCceecchhhhhhhchHhhHHhcHhhHh
Q 001479 157 QLCARCFAPATTRCSRCKSVRYCSGKCQIIHWRQVHKQECQQLEK 201 (1071)
Q Consensus 157 ~~C~~Cg~~~~~~Cs~Ck~v~YCs~~CQ~~dW~~~HK~~C~~~~~ 201 (1071)
.=|++|...|-..| |-...|||.+||..||+ .|++.|+.-..
T Consensus 528 QWC~nC~~EAiy~C--CWNTSYCsveCQQ~HW~-~H~ksCrrk~~ 569 (588)
T KOG3612|consen 528 QWCYNCLDEAIYHC--CWNTSYCSVECQQGHWP-EHRKSCRRKKT 569 (588)
T ss_pred HHHHhhhHHHHHHh--hccccccCcchhhccch-hHhhhhcccCC
Confidence 36999999998887 88999999999999999 69999986553
No 45
>KOG2061 consensus Uncharacterized MYND Zn-finger protein [General function prediction only]
Probab=95.55 E-value=0.0061 Score=69.69 Aligned_cols=55 Identities=36% Similarity=0.744 Sum_probs=47.3
Q ss_pred CCCcCccccccccccCccccccCCCceecchhhhhhhchHhhHHhcHhhHhccCC
Q 001479 151 TSKNGFQLCARCFAPATTRCSRCKSVRYCSGKCQIIHWRQVHKQECQQLEKTSSS 205 (1071)
Q Consensus 151 ~~~~~~~~C~~Cg~~~~~~Cs~Ck~v~YCs~~CQ~~dW~~~HK~~C~~~~~~~~~ 205 (1071)
..+.+...|..|+..+...|.+|+.+.|||..+|..||+.+|+..|.+.......
T Consensus 131 ~~~~~~~~~~~~~~~a~~~~~~~~~a~~~S~~~q~~d~~~~~~~a~aq~~~~~~~ 185 (362)
T KOG2061|consen 131 ADKDGADLCGSCGCSAPAACSPCKAAAYCSKKHQSLDWPKGHKDACAQPSTLGEI 185 (362)
T ss_pred ccCcccchhccCcccCcccccccchhhhcCchhhcccccccccccccCccccccc
Confidence 4555678999999998899999999999999999999998899999876655443
No 46
>KOG3556 consensus Familial cylindromatosis protein [General function prediction only]
Probab=95.44 E-value=0.0093 Score=70.03 Aligned_cols=95 Identities=19% Similarity=0.200 Sum_probs=48.7
Q ss_pred CcccccCCCcccHHHHHHHHHcCHHHHHHHHhcccCcccCCCchhHHHHHHHHHH-----HHHhCCCC--CChHHHHHHH
Q 001479 533 PRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVM-----MLRESAGP--LSPGRILSHM 605 (1071)
Q Consensus 533 p~GL~NlGNTCYmNSVLQ~L~sip~Fr~~Ll~~~~~~~~~~~~~~ll~qL~kLf~-----~L~ss~~~--isP~~fl~~L 605 (1071)
..|++-.-|+||+||.|-++|.-.....-.+-.. ....+..-.-+++++++ -|+..+-. -....+...+
T Consensus 368 ~kgiqgh~nscyldstlf~~f~f~sv~dS~l~rr----p~p~d~~nYse~q~~LRseiVnplr~n~fVr~~~~mklR~~l 443 (724)
T KOG3556|consen 368 IKGIQGHPNSCYLDSTLFKPFEFDSVTDSTLPRR----PPPSDSMNYSEMQHSLRSEIVNPLRRNQFVRQNPAMKLRVEL 443 (724)
T ss_pred cccccCCcchhhccccccccccccccccccccCC----CCcccccccHHHHHHHHHhhhchhhhcceeecCHHHHHHHHH
Confidence 4588889999999999998886443322222111 11111111223333332 23222211 1122333333
Q ss_pred HhcccccCCC---CcCcHHHHHHHHHHHHHH
Q 001479 606 RSISCQIGDG---SQEDAHEFLRLLVASMQS 633 (1071)
Q Consensus 606 ~k~~~~F~~g---~QQDA~EFL~~LLd~Le~ 633 (1071)
.+++ |..| ...|+.|||.-|+..|-+
T Consensus 444 dql~--~~sG~tceekdpEEFLn~l~t~i~r 472 (724)
T KOG3556|consen 444 DQLN--FRSGDTCEEKDPEEFLNGLKTLIAR 472 (724)
T ss_pred Hhhh--ccccCcccccCHHHHHHHHHHHhcc
Confidence 3332 3333 668999999988877643
No 47
>PF08715 Viral_protease: Papain like viral protease; InterPro: IPR014827 This family of viral proteases are similar to the papain protease and are required for proteolytic processing of the replicase polyprotein. The structure of this protein has shown it adopts a fold similar to that of de-ubiquitinating enzymes []. ; GO: 0004197 cysteine-type endopeptidase activity, 0008242 omega peptidase activity, 0016740 transferase activity; PDB: 3MP2_A 3EWP_B 3EWO_B 2FE8_A 3MJ5_B 3EKE_A 3EJF_A 3JZT_H 3ETI_E 3E9S_A.
Probab=92.39 E-value=0.92 Score=52.20 Aligned_cols=76 Identities=20% Similarity=0.223 Sum_probs=39.2
Q ss_pred CCcccccCCCcccHHHHHHHHHcCHH-HHHHHHhcccCcccCCCchhHHHHHHHHHHHHHhCCCCCChHHHHHHHHhccc
Q 001479 532 SPRGLLNCGNSCYANAVLQCLTCTKP-LVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESAGPLSPGRILSHMRSISC 610 (1071)
Q Consensus 532 gp~GL~NlGNTCYmNSVLQ~L~sip~-Fr~~Ll~~~~~~~~~~~~~~ll~qL~kLf~~L~ss~~~isP~~fl~~L~k~~~ 610 (1071)
|.+=|+=.-|.||+||++=+|-++.. |+. -.++.+...+..+ .|..|...+-.. .
T Consensus 101 g~~~Lkq~dNNCwVna~~~~LQ~~~~~f~~-------------------~~l~~aw~~f~~G----~~~~fVa~~Ya~-~ 156 (320)
T PF08715_consen 101 GFRVLKQSDNNCWVNAACLQLQALKIKFKS-------------------PGLDEAWNEFKAG----DPAPFVAWCYAS-T 156 (320)
T ss_dssp TEEEE---TTTHHHHHHHHHHTTST--BSS-------------------HHHHHHHHHHHTT------HHHHHHHHHH-T
T ss_pred CEEEEEecCCCcHHHHHHHHHHhcCCccCC-------------------HHHHHHHHHHhCC----ChHHHHHHHHHH-c
Confidence 34445555799999999877755431 211 1233333433332 455665555332 2
Q ss_pred ccCCCCcCcHHHHHHHHHHHH
Q 001479 611 QIGDGSQEDAHEFLRLLVASM 631 (1071)
Q Consensus 611 ~F~~g~QQDA~EFL~~LLd~L 631 (1071)
....|+--||+++|..|+..+
T Consensus 157 ~~~~G~~gDa~~~L~~ll~~~ 177 (320)
T PF08715_consen 157 NAKKGDPGDAEYVLSKLLKDA 177 (320)
T ss_dssp T--TTS---HHHHHHHHHTTB
T ss_pred CCCCCCCcCHHHHHHHHHHhc
Confidence 456689999999999998644
No 48
>KOG1887 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=92.23 E-value=0.023 Score=70.53 Aligned_cols=163 Identities=17% Similarity=0.292 Sum_probs=98.4
Q ss_pred cccccccccceEEEeEEEecCCCCCccccc-cceeeEEeeec--------ccccHHHHHHhcCCCCcCCCCCcccc----
Q 001479 651 ETTFIQHTFGGRLWSKVKCLRCSHESERYE-NIMDLTLEIYG--------WVESLEDALTQFTSPEDLDGENMYKC---- 717 (1071)
Q Consensus 651 ~~siI~~lF~g~l~s~ikC~~Cg~~S~~~E-~f~~LsL~I~~--------~~~sLee~L~~f~~~E~LdGdnky~C---- 717 (1071)
..+++.++|+.....+..|..|+......+ .-+-+.+.... ...++++.|.. .+.+. +..|
T Consensus 592 r~~l~~~lf~l~~~e~~Sc~~cr~~~n~peqsS~~~~~~a~slr~~k~a~~n~~f~~ilk~-i~m~~-----~m~cD~~~ 665 (806)
T KOG1887|consen 592 RESLVNRLFTLEEKERMSCSKCRRDLNYPEQSSYGIVIAADSLRQLKCAFQNITFEDILKN-IRMND-----KMLCDKET 665 (806)
T ss_pred HHHHHHhhhhhhhhhhccccccccCCCCcchhhhhhhccchhhhhHHHHhhhhhHHHHHHH-hhhhh-----hhcccccC
Confidence 346788899999999999999998744332 22222222111 12344444444 22111 2334
Q ss_pred ccccccceeeEEEEEeecCceEEEEEeeecccccccc--cceEecCccCCCCCccCCCCCCCCceeEEEEEEEecCCCCC
Q 001479 718 ARCATYVRARKQLSIHEAPNILTIVLKRFQEGRYGKI--NKCITFPEMLDMMPFMTGTGDTPPLYMLYSVVVHLDTQNAS 795 (1071)
Q Consensus 718 ~~Ck~k~~A~K~~~I~klP~ILiIqLkRF~~~~~~KI--~~~V~FPe~LDL~~y~~~~~~~~~~YeL~gVIvH~G~~~S~ 795 (1071)
+.||+..-. ...|...|+|++|.|.+=.. ...|. .+...+-.++|++.....+.+...+|+|+++|.....
T Consensus 666 gGCgk~n~v--~h~is~~P~vftIvlewEk~-ETe~eI~~T~~aL~teidis~~y~~g~ep~t~yrLVSmv~~~e~---- 738 (806)
T KOG1887|consen 666 GGCGKANLV--HHILSPCPPVFTIVLEWEKS-ETEKEISETTKALATEIDISRLYREGLEPNTKYRLVSMVGNHEE---- 738 (806)
T ss_pred CCCcchhhh--hhhcCCCCCeeEeeeehhcc-cchHHHHHHHHHHHhhhhHHHHhhhccCcCceeEEEEEeeeccc----
Confidence 346653322 23578899999997765321 11111 1112234566666544445566789999999987753
Q ss_pred CCceEEEEEECCCCCEE--EEcCCeeeee-cCCccc
Q 001479 796 FSGHYVSYIKDMQGTWF--RIDDTQVHPV-PMSQVM 828 (1071)
Q Consensus 796 ~sGHYvayVK~~dg~Wy--~FNDs~Vt~v-s~eeVl 828 (1071)
.++|.|+... .++|+ +.+|..+..+ +|.+|.
T Consensus 739 -~~~~~C~Aye-~Nrwvs~r~~~~~~e~iG~w~dvv 772 (806)
T KOG1887|consen 739 -GEEYICFAYE-PNRWVSLRHEDSQGEVVGDWKDVV 772 (806)
T ss_pred -cceEEEeecc-CCcchhhHHHHHHhhhccchHHHH
Confidence 5999999997 78888 8999887776 444443
No 49
>PF13824 zf-Mss51: Zinc-finger of mitochondrial splicing suppressor 51
Probab=91.47 E-value=0.18 Score=43.21 Aligned_cols=44 Identities=23% Similarity=0.516 Sum_probs=37.4
Q ss_pred cccccc----cCccccccCCCceecchhhhhhhchHhhHHhcHhhHhcc
Q 001479 159 CARCFA----PATTRCSRCKSVRYCSGKCQIIHWRQVHKQECQQLEKTS 203 (1071)
Q Consensus 159 C~~Cg~----~~~~~Cs~Ck~v~YCs~~CQ~~dW~~~HK~~C~~~~~~~ 203 (1071)
|..|+. .....|..|....|||+++=..|-. .|+..|..+++.+
T Consensus 2 Cpv~~~~~~~~v~~~Cp~cGipthcS~ehw~~D~e-~H~~~c~~LRqvN 49 (55)
T PF13824_consen 2 CPVCKKDLPAHVNFECPDCGIPTHCSEEHWEDDYE-EHRQLCERLRQVN 49 (55)
T ss_pred CCCCccccccccCCcCCCCCCcCccCHHHHHHhHH-HHHHHHHHHHHhc
Confidence 777776 5557899999999999999888887 5999999998754
No 50
>PLN03158 methionine aminopeptidase; Provisional
Probab=90.40 E-value=0.2 Score=59.23 Aligned_cols=41 Identities=34% Similarity=0.798 Sum_probs=34.9
Q ss_pred ccccccccccCccccccCCC-------ceecchhhhhhhchHhhHHhcH
Q 001479 156 FQLCARCFAPATTRCSRCKS-------VRYCSGKCQIIHWRQVHKQECQ 197 (1071)
Q Consensus 156 ~~~C~~Cg~~~~~~Cs~Ck~-------v~YCs~~CQ~~dW~~~HK~~C~ 197 (1071)
...|..|++.+.+.|-.|.. .++||.+|=+..|+. ||..=.
T Consensus 9 ~~~c~~c~~~a~l~Cp~C~k~~~~~~~s~fCsq~CFk~~w~~-Hk~~h~ 56 (396)
T PLN03158 9 PLACARCSKPAHLQCPKCLELKLPREGASFCSQDCFKAAWSS-HKSVHT 56 (396)
T ss_pred cccccCCCCcccccCccchhcCCCCCCceeECHHHHHHHHHH-HHHHHH
Confidence 45799999999999999874 679999999999994 987653
No 51
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C28 (clan CA).The protein fold of the peptidase unit for members of this family resembles that of papain. The leader peptidase of Foot-and-mouth disease virus cleaves itself from the growing polyprotein and also cleaves the host translation initiation factor 4GI (eIF4G), thus inhibiting 5'-cap dependent translation [].; GO: 0004197 cysteine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 2JQF_R 1QMY_B 1QOL_G 2JQG_R.
Probab=84.67 E-value=0.37 Score=50.69 Aligned_cols=53 Identities=17% Similarity=0.241 Sum_probs=35.7
Q ss_pred EEEEEEEecCCCCCCCceEEEEEECCCCCEEEEcCCeeeeecCCcccCCccEEEEEEEcCCCCCc
Q 001479 782 LYSVVVHLDTQNASFSGHYVSYIKDMQGTWFRIDDTQVHPVPMSQVMSEGAYMLFYMRSCPRPRR 846 (1071)
Q Consensus 782 L~gVIvH~G~~~S~~sGHYvayVK~~dg~Wy~FNDs~Vt~vs~eeVls~~AYILfY~R~s~~~~~ 846 (1071)
..+.|.-.| .||-+.+.+. .+.||.|||+.+.+.++.. +=+|+|..-+..+..
T Consensus 129 f~agi~~~g------~~Havfa~~t-s~gWy~iDDe~~y~~tPdp-----~~VLvfvp~D~Epl~ 181 (193)
T PF05408_consen 129 FHAGIFLKG------QEHAVFACVT-SDGWYAIDDEDFYPWTPDP-----SDVLVFVPYDQEPLP 181 (193)
T ss_dssp EEEEEEEES------TTEEEEEEEE-TTCEEEEETTEEEE----G-----GGEEEEEESSSS-TT
T ss_pred hhhHheecC------CcceEEEEEe-eCcEEEecCCeeeeCCCCh-----hheEEEcccCcccCC
Confidence 455666666 4999999987 6779999999999885433 234778777665443
No 52
>PF04438 zf-HIT: HIT zinc finger; InterPro: IPR007529 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the HIT-type zinc finger, which contains 7 conserved cysteines and one histidine that can potentially coordinate two zinc atoms. It has been named after the first protein that originally defined the domain: the yeast HIT1 protein (P46973 from SWISSPROT) []. The HIT-type zinc finger displays some sequence similarities to the MYND-type zinc finger. The function of this domain is unknown but it is mainly found in nuclear proteins involved in gene regulation and chromatin remodeling. This domain is also found in the thyroid receptor interacting protein 3 (TRIP-3) Q15649 from SWISSPROT, that specifically interacts with the ligand binding domain of the thyroid receptor. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2YQP_A 2YQQ_A 1X4S_A.
Probab=79.09 E-value=0.87 Score=34.46 Aligned_cols=28 Identities=46% Similarity=1.017 Sum_probs=21.4
Q ss_pred cccccccccCccccccCCCceecchhhhh
Q 001479 157 QLCARCFAPATTRCSRCKSVRYCSGKCQI 185 (1071)
Q Consensus 157 ~~C~~Cg~~~~~~Cs~Ck~v~YCs~~CQ~ 185 (1071)
..|..|+..+..+|.+|... |||.+|-+
T Consensus 3 ~~C~vC~~~~kY~Cp~C~~~-~CSl~C~k 30 (30)
T PF04438_consen 3 KLCSVCGNPAKYRCPRCGAR-YCSLACYK 30 (30)
T ss_dssp EEETSSSSEESEE-TTT--E-ESSHHHHH
T ss_pred CCCccCcCCCEEECCCcCCc-eeCcEeEC
Confidence 47999999877899999965 99999853
No 53
>KOG3362 consensus Predicted BBOX Zn-finger protein [General function prediction only]
Probab=75.98 E-value=1.4 Score=44.71 Aligned_cols=33 Identities=30% Similarity=0.734 Sum_probs=28.4
Q ss_pred cccccccccCccccccCCCceecchhhhhhhchH
Q 001479 157 QLCARCFAPATTRCSRCKSVRYCSGKCQIIHWRQ 190 (1071)
Q Consensus 157 ~~C~~Cg~~~~~~Cs~Ck~v~YCs~~CQ~~dW~~ 190 (1071)
+.|++||-.....|..|. ++|||..|-..|-.+
T Consensus 119 ~fCaVCG~~S~ysC~~CG-~kyCsv~C~~~HneT 151 (156)
T KOG3362|consen 119 KFCAVCGYDSKYSCVNCG-TKYCSVRCLKTHNET 151 (156)
T ss_pred hhhhhcCCCchhHHHhcC-Cceeechhhhhcccc
Confidence 579999998888999998 569999999877643
No 54
>KOG2857 consensus Predicted MYND Zn-finger protein/hormone receptor interactor [Transcription]
Probab=56.17 E-value=4.3 Score=41.17 Aligned_cols=37 Identities=32% Similarity=1.034 Sum_probs=28.9
Q ss_pred cccccccccC-ccccccCCCceecchhhhhhhchHhhHH--hcHhh
Q 001479 157 QLCARCFAPA-TTRCSRCKSVRYCSGKCQIIHWRQVHKQ--ECQQL 199 (1071)
Q Consensus 157 ~~C~~Cg~~~-~~~Cs~Ck~v~YCs~~CQ~~dW~~~HK~--~C~~~ 199 (1071)
..|..|.+.. ..+|..|. |.|||..| |+ .||. .|.+.
T Consensus 6 ~tC~ic~e~~~KYKCpkC~-vPYCSl~C----fK-iHk~tPq~~~v 45 (157)
T KOG2857|consen 6 TTCVICLESEIKYKCPKCS-VPYCSLPC----FK-IHKSTPQCETV 45 (157)
T ss_pred eeehhhhcchhhccCCCCC-Cccccchh----hh-hccCCcccccc
Confidence 4799998755 56999998 56999999 88 5887 56544
No 55
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C28 (clan CA).The protein fold of the peptidase unit for members of this family resembles that of papain. The leader peptidase of Foot-and-mouth disease virus cleaves itself from the growing polyprotein and also cleaves the host translation initiation factor 4GI (eIF4G), thus inhibiting 5'-cap dependent translation [].; GO: 0004197 cysteine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 2JQF_R 1QMY_B 1QOL_G 2JQG_R.
Probab=55.57 E-value=47 Score=35.55 Aligned_cols=24 Identities=33% Similarity=0.555 Sum_probs=16.7
Q ss_pred cCCcccccCCCcccHHHHHHHHHc
Q 001479 531 LSPRGLLNCGNSCYANAVLQCLTC 554 (1071)
Q Consensus 531 ~gp~GL~NlGNTCYmNSVLQ~L~s 554 (1071)
..++|+.|.+|+||+||++|++..
T Consensus 31 ~eft~~PN~~dnCWlNaL~QL~~~ 54 (193)
T PF05408_consen 31 MEFTGLPNNHDNCWLNALLQLFRY 54 (193)
T ss_dssp -EEE----SSSTHHHHHHHHHHHH
T ss_pred eEEecCCCCCCChHHHHHHHHHHH
Confidence 446799999999999999999864
No 56
>KOG4317 consensus Predicted Zn-finger protein [Function unknown]
Probab=52.06 E-value=5 Score=45.51 Aligned_cols=35 Identities=40% Similarity=0.915 Sum_probs=27.1
Q ss_pred cccccccc-cCccccccCCCceecchhhhhhhchHhhHHhcH
Q 001479 157 QLCARCFA-PATTRCSRCKSVRYCSGKCQIIHWRQVHKQECQ 197 (1071)
Q Consensus 157 ~~C~~Cg~-~~~~~Cs~Ck~v~YCs~~CQ~~dW~~~HK~~C~ 197 (1071)
-.|..|++ +...+|.||..- |||-.|- +. ||..|.
T Consensus 8 ~~C~ic~vq~~~YtCPRCn~~-YCsl~CY----r~-h~~~Cs 43 (383)
T KOG4317|consen 8 LACGICGVQKREYTCPRCNLL-YCSLKCY----RN-HKHSCS 43 (383)
T ss_pred eeccccccccccccCCCCCcc-ceeeeee----cC-CCccch
Confidence 36888987 445799999965 9999995 53 777785
No 57
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=45.90 E-value=14 Score=32.42 Aligned_cols=32 Identities=25% Similarity=0.536 Sum_probs=23.9
Q ss_pred ccccccccccCccccccCCCceecchhhhhhhchHhhHH
Q 001479 156 FQLCARCFAPATTRCSRCKSVRYCSGKCQIIHWRQVHKQ 194 (1071)
Q Consensus 156 ~~~C~~Cg~~~~~~Cs~Ck~v~YCs~~CQ~~dW~~~HK~ 194 (1071)
++.|.+||++-.. .-.|||.+|+..-++ ++|.
T Consensus 3 HkHC~~CG~~Ip~------~~~fCS~~C~~~~~k-~qk~ 34 (59)
T PF09889_consen 3 HKHCPVCGKPIPP------DESFCSPKCREEYRK-RQKR 34 (59)
T ss_pred CCcCCcCCCcCCc------chhhhCHHHHHHHHH-HHHH
Confidence 3679999986553 256999999988887 3554
No 58
>PRK01343 zinc-binding protein; Provisional
Probab=36.94 E-value=30 Score=30.27 Aligned_cols=27 Identities=30% Similarity=0.768 Sum_probs=21.5
Q ss_pred cccccccccCccccccCCCceecchhhhhhhc
Q 001479 157 QLCARCFAPATTRCSRCKSVRYCSGKCQIIHW 188 (1071)
Q Consensus 157 ~~C~~Cg~~~~~~Cs~Ck~v~YCs~~CQ~~dW 188 (1071)
..|..|+++... ....|||+.|+..|-
T Consensus 10 ~~CP~C~k~~~~-----~~rPFCS~RC~~iDL 36 (57)
T PRK01343 10 RPCPECGKPSTR-----EAYPFCSERCRDIDL 36 (57)
T ss_pred CcCCCCCCcCcC-----CCCcccCHHHhhhhH
Confidence 469999997642 356899999999983
No 59
>PF10013 DUF2256: Uncharacterized protein conserved in bacteria (DUF2256); InterPro: IPR017136 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=33.43 E-value=14 Score=30.24 Aligned_cols=29 Identities=38% Similarity=0.969 Sum_probs=22.3
Q ss_pred cccccccccCc--cccccCC-Cceecchhhhh
Q 001479 157 QLCARCFAPAT--TRCSRCK-SVRYCSGKCQI 185 (1071)
Q Consensus 157 ~~C~~Cg~~~~--~~Cs~Ck-~v~YCs~~CQ~ 185 (1071)
..|..||.+=. ++-.+|- .|.|||..|..
T Consensus 9 K~C~~C~rpf~WRKKW~~~Wd~VkYCS~rCR~ 40 (42)
T PF10013_consen 9 KICPVCGRPFTWRKKWARCWDEVKYCSDRCRR 40 (42)
T ss_pred CcCcccCCcchHHHHHHHhchhhccHHHHhcc
Confidence 57999998655 4566665 78999999964
No 60
>COG3478 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=31.30 E-value=37 Score=30.32 Aligned_cols=35 Identities=20% Similarity=0.506 Sum_probs=28.0
Q ss_pred CccccccccccceeeEEEEEe--ecCceEEEEEeeec
Q 001479 713 NMYKCARCATYVRARKQLSIH--EAPNILTIVLKRFQ 747 (1071)
Q Consensus 713 nky~C~~Ck~k~~A~K~~~I~--klP~ILiIqLkRF~ 747 (1071)
+.+.|++|+...-..+.+... .+-+++=||.++|-
T Consensus 3 ~~~kCpKCgn~~~~ekei~~tg~~lskifdvq~n~f~ 39 (68)
T COG3478 3 NAFKCPKCGNTNYEEKEIAATGGGLSKIFDVQNNKFI 39 (68)
T ss_pred ccccCCCcCCcchhhceeeccCCCcceeEEecccEEE
Confidence 457799999877777766554 78899999999993
No 61
>PLN03144 Carbon catabolite repressor protein 4 homolog; Provisional
Probab=26.91 E-value=39 Score=42.49 Aligned_cols=38 Identities=37% Similarity=0.631 Sum_probs=28.8
Q ss_pred cccccc----ccCccccccCC-------CceecchhhhhhhchHhhHHhc
Q 001479 158 LCARCF----APATTRCSRCK-------SVRYCSGKCQIIHWRQVHKQEC 196 (1071)
Q Consensus 158 ~C~~Cg----~~~~~~Cs~Ck-------~v~YCs~~CQ~~dW~~~HK~~C 196 (1071)
.|+.|. +++.+.|-.|. ..++|+.+|=+..|+ .||..=
T Consensus 61 ~~~~c~~h~~~~a~lqCp~C~k~~~~~~~s~fCsq~CFk~~w~-~Hk~~h 109 (606)
T PLN03144 61 KVAVCSVHPSEPATLQCVGCVKAKLPVSKSYHCSPKCFSDAWR-HHRVLH 109 (606)
T ss_pred cceeEeecCCCcccccCccchhcCCCcCcceeeCHHHHHHHHH-HHHHHH
Confidence 466664 46667777775 257899999999999 598875
No 62
>PF14353 CpXC: CpXC protein
Probab=23.94 E-value=69 Score=31.82 Aligned_cols=48 Identities=19% Similarity=0.404 Sum_probs=25.1
Q ss_pred EEecCCCCCccccccceeeEEeeecccccHHHHHHhcCCCCcCCCCCccccccccccce
Q 001479 667 VKCLRCSHESERYENIMDLTLEIYGWVESLEDALTQFTSPEDLDGENMYKCARCATYVR 725 (1071)
Q Consensus 667 ikC~~Cg~~S~~~E~f~~LsL~I~~~~~sLee~L~~f~~~E~LdGdnky~C~~Ck~k~~ 725 (1071)
++|..|++..... ....++... ...|.+.| +..+.. .+.|+.||....
T Consensus 2 itCP~C~~~~~~~---v~~~I~~~~-~p~l~e~i---l~g~l~----~~~CP~Cg~~~~ 49 (128)
T PF14353_consen 2 ITCPHCGHEFEFE---VWTSINADE-DPELKEKI---LDGSLF----SFTCPSCGHKFR 49 (128)
T ss_pred cCCCCCCCeeEEE---EEeEEcCcC-CHHHHHHH---HcCCcC----EEECCCCCCcee
Confidence 6899999874332 111222221 12333333 233332 399999997654
No 63
>KOG2858 consensus Uncharacterized conserved protein [General function prediction only]
Probab=22.73 E-value=31 Score=40.14 Aligned_cols=31 Identities=35% Similarity=0.828 Sum_probs=24.9
Q ss_pred cccccccccCcc-ccccCCCceecchhhhhhhc
Q 001479 157 QLCARCFAPATT-RCSRCKSVRYCSGKCQIIHW 188 (1071)
Q Consensus 157 ~~C~~Cg~~~~~-~Cs~Ck~v~YCs~~CQ~~dW 188 (1071)
-.|.+|++.+.+ +|-||- ++-|+-+|-++|=
T Consensus 18 vlCgVClknE~KYkCPRCl-~rtCsLeCskkHK 49 (390)
T KOG2858|consen 18 VLCGVCLKNEPKYKCPRCL-ARTCSLECSKKHK 49 (390)
T ss_pred hhhhhcccCcccccCcchh-hhheecccccccc
Confidence 479999997764 899998 5689999985543
No 64
>KOG2738 consensus Putative methionine aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=20.21 E-value=46 Score=38.12 Aligned_cols=40 Identities=28% Similarity=0.687 Sum_probs=32.9
Q ss_pred ccc--ccccccCccccccCC-----CceecchhhhhhhchHhhHHhcH
Q 001479 157 QLC--ARCFAPATTRCSRCK-----SVRYCSGKCQIIHWRQVHKQECQ 197 (1071)
Q Consensus 157 ~~C--~~Cg~~~~~~Cs~Ck-----~v~YCs~~CQ~~dW~~~HK~~C~ 197 (1071)
..| ..|++++.++|..|. ....|+.+|-+.-|.. ||+.-.
T Consensus 7 ~~c~~~~c~~~a~l~Cp~c~~~~i~~~~fc~q~cf~~~w~~-hK~~h~ 53 (369)
T KOG2738|consen 7 ISCEGLQCGSEASLQCPTCLKLGIKSAYFCAQECFKNSWLS-HKKLHR 53 (369)
T ss_pred ceeeccccCChhhccCchhhhcCCCcccccCchhhhcchhh-hhhhcc
Confidence 467 779998889999886 3468999999999995 998754
No 65
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional
Probab=20.13 E-value=3.6e+02 Score=27.47 Aligned_cols=15 Identities=27% Similarity=0.457 Sum_probs=10.8
Q ss_pred EEeEEEecCCCCCcc
Q 001479 663 LWSKVKCLRCSHESE 677 (1071)
Q Consensus 663 l~s~ikC~~Cg~~S~ 677 (1071)
..-...|..||+...
T Consensus 67 ~p~~~~C~~CG~~~~ 81 (135)
T PRK03824 67 EEAVLKCRNCGNEWS 81 (135)
T ss_pred cceEEECCCCCCEEe
Confidence 345689999997643
Done!