Query 001479
Match_columns 1071
No_of_seqs 545 out of 2751
Neff 5.7
Searched_HMMs 29240
Date Tue Mar 26 17:03:53 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001479.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_779-782//hhsearch_pdb/001479hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ihp_A Ubiquitin carboxyl-term 1.0 1 1 536.2 25.5 340 473-841 290-853 (854)
2 2y6e_A Ubiquitin carboxyl-term 1.0 1 1 503.5 31.9 313 531-846 6-364 (367)
3 2gfo_A Ubiquitin carboxyl-term 1.0 1 1 494.8 27.9 308 531-841 60-396 (396)
4 3nhe_A Ubiquitin carboxyl-term 1.0 1 1 483.9 30.6 309 531-843 7-345 (348)
5 2ayn_A Ubiquitin carboxyl-term 1.0 1 1 483.8 23.2 308 531-845 12-398 (404)
6 3i3t_A Ubiquitin carboxyl-term 1.0 1 1 483.5 22.8 308 531-843 1-353 (355)
7 3mhs_A Ubiquitin carboxyl-term 1.0 1 1 476.8 26.4 307 531-842 139-475 (476)
8 1vjv_A Ubiquitin carboxyl-term 1.0 1 1 476.5 23.8 288 531-841 22-414 (415)
9 2f1z_A Ubiquitin carboxyl-term 1.0 1 1 473.1 25.8 294 530-843 172-486 (522)
10 1nb8_A Ubiquitin carboxyl-term 1.0 1 1 470.1 27.5 293 531-843 4-317 (353)
No 1
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=1.00 E-value=1 Score=536.16 Aligned_cols=340 Identities=22% Similarity=0.301 Sum_probs=297.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCC-EEECCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 87884011163110374211101011023237643171-54001123431000000378688643139996227899999
Q 001479 473 QGSNVVSKMGIMKMMGLRKSTKLRQDSSELWHDQHRKL-KMLFPYEEFLKLFQYEVIDLLSPRGLLNCGNSCYANAVLQC 551 (1071)
Q Consensus 473 ~g~~hLshfGI~k~~nl~~~~Kteks~~EL~~e~n~~~-~~~~~~E~~~~l~~~~~~g~~gp~GL~NlGNTCYlNSVLQ~ 551 (1071)
....||+|||| ++.++.||+++++||++++|.++ +|....+....+. +.++ +|++||.|+|||||||||||+
T Consensus 290 ~l~~~l~~~gi----~~~~~~kt~k~~~el~~~~n~~~g~~~~~~~~g~~l~--p~~~-~G~~GL~NlGNTCYmNSvLQ~ 362 (854)
T 3ihp_A 290 SLAEHLSHFGI----DMLKMQKTDKTMTELEIDMNQRIGEWELIQESGVPLK--PLFG-PGYTGIRNLGNSCYLNSVVQV 362 (854)
T ss_dssp THHHHHHHTTC----CC-------------------------------------CCCS-TTCCCBCCCSSCHHHHHHHHH
T ss_pred CHHHHHHHHCC----CCCCCCCCCHHHHHHHHHHCCCCCHHHHHCCCCCCCC--CCCC-CCCCCEEECCCCEEHHHHHHH
T ss_conf 27889987372----2244445501210100332222001333133576235--4567-886551766776203379999
Q ss_pred HHCCHHHHHHHHHCCCC---CCCCCCCHHHHHHHHHHHHHHHH---------------------CCCCCCHHHHHHHHHH
Q ss_conf 87597799999953457---65689850699999999999970---------------------8999894899999983
Q 001479 552 LTCTKPLVIYLLRRSHS---SACCGKDWCLMCELEQHVMMLRE---------------------SAGPLSPGRILSHMRS 607 (1071)
Q Consensus 552 Lfsip~Fr~~Ll~~~~~---~~~~~~~~~ll~qL~kL~~~L~s---------------------s~~~isP~~ll~~L~k 607 (1071)
|+++|+|+++++...+. .....+..++.++|++|+..|++ ....+.|..|+..++.
T Consensus 363 L~~~p~fr~~ll~~~~~~~~~~~~~~~~~l~~~l~~L~~~L~s~~~s~~~~~~~~~~~~~~~~~~~~~isP~~f~~~l~~ 442 (854)
T 3ihp_A 363 LFSIPDFQRKYVDKLEKIFQNAPTDPTQDFSTQVAKLGHGLLSGEYSKPVPESGDGERVPEQKEVQDGIAPRMFKALIGK 442 (854)
T ss_dssp HTTSHHHHHHHTTTHHHHHHHCCSCGGGCHHHHHHHHHHHHHSCC---------------------CCBCCHHHHHHHTT
T ss_pred HHCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 85729999999854344302566785411889999999987456645444211222233333467775481999999864
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCEEEEE
Q ss_conf 01236998867499999999999999985304999888976444520011346188759996578987633331124688
Q 001479 608 ISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTL 687 (1071)
Q Consensus 608 ~~~~F~~g~QQDA~EFL~~LLd~Le~e~l~~~~~e~k~d~~~~~~siI~~lF~G~l~s~ikC~~Cg~~S~~~E~f~~LsL 687 (1071)
.++.|..++||||+|||.+||+.|++++.. .+.|.++|+|.+.++++|..|++++.+.++|++|+|
T Consensus 443 ~~~~F~~~~QQDA~EFl~~LLd~L~~el~~--------------~s~i~~lF~G~l~s~i~C~~C~~vs~t~e~F~~LsL 508 (854)
T 3ihp_A 443 GHPEFSTNRQQDAQEFFLHLINMVERNCRS--------------SENPNEVFRFLVEEKIKCLATEKVKYTQRVDYIMQL 508 (854)
T ss_dssp TCTTTTSSSCCBHHHHHHHHHHHHHHTCTT--------------SCCGGGGTCEEEEEEEEETTTTEEEEEEEEESEEEE
T ss_pred HCCCCCCCCCCCHHHHHHHHHHHHHHHHCC--------------CCCCHHHCCCEEEEEEEECCCCCEEEEEEECEEEEE
T ss_conf 033112144337899999999999987365--------------688222107358899996489977677630647884
Q ss_pred EEECCC-------------------------------CCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECC
Q ss_conf 520541-------------------------------1289999721799768998743355456310014799872069
Q 001479 688 EIYGWV-------------------------------ESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAP 736 (1071)
Q Consensus 688 ~I~~~~-------------------------------~sLed~L~~f~~~E~Ldgdnky~C~~Ck~k~~A~K~~~I~slP 736 (1071)
+|+... .+|++||+.|+.+|.|++ |+|++|+.++.+.|+.+|.++|
T Consensus 509 ~Ip~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~sL~dcL~~f~~~E~Le~---y~C~~C~~k~~a~K~~~i~~lP 585 (854)
T 3ihp_A 509 PVPMDAALNKEELLEYEEKKRQAEEEKMALPELVRAQVPFSSCLEAYGAPEQVDD---FWSTALQAKSVAVKTTRFASFP 585 (854)
T ss_dssp CCCGGGCTTHHHHHHHHHHHHHHHHTTCCCCCCCCEECCHHHHHHHHHSCEEEEE---EEETTTTEEEEEEEEEEESSCC
T ss_pred ECCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEE---EECCCCCCCCEEEEEEEEEECC
T ss_conf 5786323442100010011110002355443245677779999998558407533---1035568730053888821289
Q ss_pred CEEEEEEEEECCC---CCCCCCCEEECCCCCCCCCCCCCCC---------------------------------------
Q ss_conf 4579998630123---2343430475686677777547899---------------------------------------
Q 001479 737 NILTIVLKRFQEG---RYGKINKCITFPEMLDMMPFMTGTG--------------------------------------- 774 (1071)
Q Consensus 737 ~VLiIqLkRF~~~---~~~Ki~~~VeFPe~LDLs~yl~~~~--------------------------------------- 774 (1071)
+||+|||+||.++ ...|++..|.||..|||.+|+..+.
T Consensus 586 ~vLiihLkRF~~d~~~~~~Ki~~~V~FP~~LDl~~y~~~~~q~~E~~lp~~~~~~~~~~~~~~~~~d~~~l~~L~~mGf~ 665 (854)
T 3ihp_A 586 DYLVIQIKKFTFGLDWVPKKLDVSIEMPEELDISQLRGTGLQPGEEELPDIAPPLVTPDEPKAPMLDESVIIQLVEMGFP 665 (854)
T ss_dssp SEEEEEECCEEECGGGCEEECCEECCCCSEEECGGGBCCCSCTTCCBCCCC----------------CHHHHHHHHHTCC
T ss_pred CEEEEEEEHHEECCCCCEEECCEEEECCCCEEHHHHCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCC
T ss_conf 66799945313567773277886985688070688506788987212133566555655445667688999999864897
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001479 775 -------------------------------------------------------------------------------- 774 (1071)
Q Consensus 775 -------------------------------------------------------------------------------- 774 (1071)
T Consensus 666 ~~~~~kal~~t~n~~~e~a~~wl~~hmdd~di~~p~~~~~~~~~~s~~~~~~~~~~e~i~~l~~mGf~~~~a~~aL~~t~ 745 (854)
T 3ihp_A 666 MDACRKAVYYTGNSGAEAAMNWVMSHMDDPDFANPLILPGSSGPGSTSAAADPPPEDCVTTIVSMGFSRDQALKALRATN 745 (854)
T ss_dssp HHHHHHHHHHTTSCCHHHHHHHHHHHTTSCGGGSCCCCC--------------CCHHHHHHHHTTTCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHC
T ss_conf 78888888631798567776777641676332465556666666665555688998999999982887889999998605
Q ss_pred ----------------------------------------------CCCCCEEEEEEEEEECCCCCCCCCEEEEEEECCC
Q ss_conf ----------------------------------------------9999426999999965889999964999999799
Q 001479 775 ----------------------------------------------DTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDMQ 808 (1071)
Q Consensus 775 ----------------------------------------------~~~~~YeL~AVIvH~G~~~S~~SGHYvayVK~~~ 808 (1071)
+++..|+|+|||+|+|. ++++||||||+|. +
T Consensus 746 ~~~eraidwlfs~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avi~H~G~--~~~~GHY~~~~~~-~ 822 (854)
T 3ihp_A 746 NSLERAVDWIFSHIDDLDAEAAMDISEGRSAADSISESVPVGPKVRDGPGKYQLFAFISHMGT--STMCGHYVCHIKK-E 822 (854)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHSCC------------------CCCCCCCSEEEEEEEEEEESS--CSSCCEEEEEEEE-T
T ss_pred CCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECC--CCCCCCEEEEEEE-C
T ss_conf 738777776406844334321001222233456543445555788889845999999996448--9997282999975-9
Q ss_pred CCEEEECCCEEEEECCCCCCCCCCEEEEEEECC
Q ss_conf 979998199024636774568963899999839
Q 001479 809 GTWFRIDDTQVHPVPMSQVMSEGAYMLFYMRSC 841 (1071)
Q Consensus 809 gkWy~FNDskVt~vs~e~Vls~~AYILfY~R~s 841 (1071)
++||+|||++|+++ +++....||||||+|.+
T Consensus 823 ~~W~~~nD~~V~~~--~~~~~~~aYilfY~R~~ 853 (854)
T 3ihp_A 823 GRWVIYNDQKVCAS--EKPPKDLGYIYFYQRVA 853 (854)
T ss_dssp TEEEEEETTEEEEC--SSCCTTSCSEEEEEECC
T ss_pred CEEEEEECCEEEEC--CCCCCCCCEEEEEEECC
T ss_conf 98999977715871--46677851699999568
No 2
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens}
Probab=1.00 E-value=1 Score=503.49 Aligned_cols=313 Identities=27% Similarity=0.453 Sum_probs=271.5
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHCCCCCCC-----CCCCHHHHHHHHHHHHHHHHC-CCCCCHHHHHHH
Q ss_conf 68864313999622789999987597799999953457656-----898506999999999999708-999894899999
Q 001479 531 LSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSAC-----CGKDWCLMCELEQHVMMLRES-AGPLSPGRILSH 604 (1071)
Q Consensus 531 ~gp~GL~NlGNTCYlNSVLQ~Lfsip~Fr~~Ll~~~~~~~~-----~~~~~~ll~qL~kL~~~L~ss-~~~isP~~ll~~ 604 (1071)
+|++||.|+||||||||+||+|+++|+|+++++...+.... .....++.++|+.|+..|+.. ...+.|..|+..
T Consensus 6 ~g~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i~P~~~~~~ 85 (367)
T 2y6e_A 6 PGLCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDAHVAPRMFKTQ 85 (367)
T ss_dssp TTCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTCGGGGCCSSCTTSCTTHHHHHHHHHHHHHTSSSCSEECCHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
T ss_conf 89808764885649899999997779999999737225550446988864299999999999997489987387999999
Q ss_pred HHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC--CCCC----------------CCCCCCCCCCCCEEEEEE
Q ss_conf 9830123699886749999999999999998530499988--8976----------------444520011346188759
Q 001479 605 MRSISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGESK--VDPR----------------LQETTFIQHTFGGRLWSK 666 (1071)
Q Consensus 605 L~k~~~~F~~g~QQDA~EFL~~LLd~Le~e~l~~~~~e~k--~d~~----------------~~~~siI~~lF~G~l~s~ 666 (1071)
++..++.|..++||||+|||++|||.|++++......... .+.. ....++|.++|+|++.++
T Consensus 86 l~~~~~~f~~~~QqDA~Efl~~LLd~L~~~l~~~~~~~~~~~~~~~g~~~~~~a~~~w~~~~~~~~s~i~~~F~G~l~s~ 165 (367)
T 2y6e_A 86 VGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDAVVAKEAWENHRLRNDSVIVDTFHGLFKST 165 (367)
T ss_dssp HHHHCGGGCSSSCCCHHHHHHHHHHHHHHHTCSCSSCCCCCCCCCCSCCHHHHHHHHHHHHHHHCCSHHHHHHCEEEEEE
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEE
T ss_conf 99740410898787879999999999999987512577644556567960677899999988706982301337688435
Q ss_pred EEECCCCCCCCCCCCCEEEEEEEECC------------------CCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 99657898763333112468852054------------------112899997217997689987433554563100147
Q 001479 667 VKCLRCSHESERYENIMDLTLEIYGW------------------VESLEDALTQFTSPEDLDGENMYKCARCATYVRARK 728 (1071)
Q Consensus 667 ikC~~Cg~~S~~~E~f~~LsL~I~~~------------------~~sLed~L~~f~~~E~Ldgdnky~C~~Ck~k~~A~K 728 (1071)
++|..|++++.+.|+|++|+|+|+.. ..+|++||+.|+.+|.++++|+|+|++|+.++.|.|
T Consensus 166 ~~C~~C~~~s~~~e~f~~LsL~ip~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~f~~~E~l~~~~~~~C~~C~~~~~a~K 245 (367)
T 2y6e_A 166 LVCPECAKVSVTFDPFCYLTLPLPLKKDRVMEGPMLQPQKKKKTTVALRDCIELFTTMETLGEHDPWYCPNCKKHQQATK 245 (367)
T ss_dssp EECTTTCCEEEEEEEESSEEEECCC-------------------CEEHHHHHHHHTSCEECCC-CCEEETTTTEEECCEE
T ss_pred EEECCCCCEEEEECCCEEEEEECCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEE
T ss_conf 89089999853375670577317987677501332056445678888999999861616478998724878788750789
Q ss_pred EEEEEECCCEEEEEEEEECCCCC--CCCCCEEECCC-CCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCEEEEEEE
Q ss_conf 99872069457999863012323--43430475686-6777775478999999426999999965889999964999999
Q 001479 729 QLSIHEAPNILTIVLKRFQEGRY--GKINKCITFPE-MLDMMPFMTGTGDTPPLYMLYSVVVHLDTQNASFSGHYVSYIK 805 (1071)
Q Consensus 729 ~~~I~slP~VLiIqLkRF~~~~~--~Ki~~~VeFPe-~LDLs~yl~~~~~~~~~YeL~AVIvH~G~~~S~~SGHYvayVK 805 (1071)
+..|.++|+||+|||+||.+... .|++..|.||. .|||.+|+.........|+|+|||+|.|.. ++|||+||+|
T Consensus 246 ~~~i~~lP~vL~i~LkRF~~~~~~~~K~~~~v~fp~~~Ldl~~~~~~~~~~~~~Y~L~avv~H~G~~---~~GHY~a~~~ 322 (367)
T 2y6e_A 246 KFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPIRGLNMSEFVCNLSARPYVYDLIAVSNHYGAM---GVGHYTAYAK 322 (367)
T ss_dssp EEEEEECCSEEEEEEECEEECSSCEEECCCCEECCSSCEECGGGBSCSSSCCCEEEEEEEEEEECSS---SSCEEEEEEE
T ss_pred EEEEECCCCEEEEEEECEEECCCCCEECCCEEEECCCCCCHHHHCCCCCCCCCEEEEEEEEECCCCC---CCCEEEEEEE
T ss_conf 9888248857899984765057663353763893177677566425878897148899885628999---8873667887
Q ss_pred CC-CCCEEEECCCEEEEECCCCCCCCCCEEEEEEECCCCCCC
Q ss_conf 79-997999819902463677456896389999983999986
Q 001479 806 DM-QGTWFRIDDTQVHPVPMSQVMSEGAYMLFYMRSCPRPRR 846 (1071)
Q Consensus 806 ~~-~gkWy~FNDskVt~vs~e~Vls~~AYILfY~R~s~~~~~ 846 (1071)
.. +++||+|||+.|+++++++|....||||||+|.+..+..
T Consensus 323 ~~~~~~W~~fnD~~V~~v~~~~v~~~~aYiLfY~r~~~~~~~ 364 (367)
T 2y6e_A 323 NKLNGKWYYFDDSNVSLASEDQIVTKAAYVLFYQRRDDEFYK 364 (367)
T ss_dssp CTTTCCEEEEETTEEEECCGGGTSSTTEEEEEEEECCC----
T ss_pred CCCCCEEEEECCCCCEECCHHHCCCCCCEEEEEEECCCCCCC
T ss_conf 699990899779873399888868897379999973898789
No 3
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A
Probab=1.00 E-value=1 Score=494.83 Aligned_cols=308 Identities=29% Similarity=0.479 Sum_probs=267.1
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHCCCCCCC-----CCCCHHHHHHHHHHHHHHHHCC-CCCCHHHHHHH
Q ss_conf 68864313999622789999987597799999953457656-----8985069999999999997089-99894899999
Q 001479 531 LSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSAC-----CGKDWCLMCELEQHVMMLRESA-GPLSPGRILSH 604 (1071)
Q Consensus 531 ~gp~GL~NlGNTCYlNSVLQ~Lfsip~Fr~~Ll~~~~~~~~-----~~~~~~ll~qL~kL~~~L~ss~-~~isP~~ll~~ 604 (1071)
+|++||.|+||||||||+||+|+++|+|+++++...+.... .....++.++|..|+..|+... ..+.|..|+..
T Consensus 60 ~g~~GL~NlGNTCYmNSvLQ~L~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~i~P~~f~~~ 139 (396)
T 2gfo_A 60 PALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYRYISPKDFKIT 139 (396)
T ss_dssp TTCCEECCSSSCHHHHHHHHHHHTCHHHHHHHHTTTHHHHCCTTCTTSCTTHHHHHHHHHHHHHHHSCEEEECCHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEECHHHHHHH
T ss_conf 78666561687416729999853788999999707421331235877741099999999999997099843778999999
Q ss_pred HHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC-------CCC-----------CCCCCCCCCCCCCEEEEEE
Q ss_conf 9830123699886749999999999999998530499988-------897-----------6444520011346188759
Q 001479 605 MRSISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGESK-------VDP-----------RLQETTFIQHTFGGRLWSK 666 (1071)
Q Consensus 605 L~k~~~~F~~g~QQDA~EFL~~LLd~Le~e~l~~~~~e~k-------~d~-----------~~~~~siI~~lF~G~l~s~ 666 (1071)
++..++.|..++||||+|||++|||.|++++......... .+. .....++|.++|+|++.++
T Consensus 140 l~~~~~~f~~~~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~~~s~I~~lF~G~l~s~ 219 (396)
T 2gfo_A 140 IGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQLNESIIVALFQGQFKST 219 (396)
T ss_dssp HHHHCGGGSSSSCCCHHHHHHHHHHHHHHHHCCCCC---------TTSCHHHHHHHHHHHHHHHCCSHHHHHHCEEEEEE
T ss_pred HHHHCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHCCEEEEE
T ss_conf 99745433487887759999999999999986531455445555556642567789998766506883402008688777
Q ss_pred EEECCCCCCCCCCCCCEEEEEEEECC-CCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCEEEEEEEE
Q ss_conf 99657898763333112468852054-11289999721799768998743355456310014799872069457999863
Q 001479 667 VKCLRCSHESERYENIMDLTLEIYGW-VESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKR 745 (1071)
Q Consensus 667 ikC~~Cg~~S~~~E~f~~LsL~I~~~-~~sLed~L~~f~~~E~Ldgdnky~C~~Ck~k~~A~K~~~I~slP~VLiIqLkR 745 (1071)
++|..|+.++.+.|+|++|+|+|+.. ..+|++||+.|+..|.++|+|+|+|++|+.++.+.|+..|.++|+||+|||+|
T Consensus 220 i~C~~C~~~s~~~e~f~~LsL~ip~~~~~sL~~~L~~f~~~E~l~~~n~~~C~~C~~~~~a~k~~~i~~lP~vLiihLkR 299 (396)
T 2gfo_A 220 VQCLTCHKKSRTFEAFMYLSLPLASTSKCTLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKR 299 (396)
T ss_dssp EEETTTCCEEEEEEEESSEEECCSCSSEEEHHHHHHHHTSCEEECSTTCEEETTTTEEECEEEEEEEEECCSEEEEEECC
T ss_pred EEECCCCCEECCCCCCEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEEEECC
T ss_conf 88579996203244631233326634657999999983772251687641157755545358999980378579998501
Q ss_pred ECCCC--CCCCCCEEECC-CCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCEEEEEEECC-CCCEEEECCCEEEE
Q ss_conf 01232--34343047568-6677777547899999942699999996588999996499999979-99799981990246
Q 001479 746 FQEGR--YGKINKCITFP-EMLDMMPFMTGTGDTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDM-QGTWFRIDDTQVHP 821 (1071)
Q Consensus 746 F~~~~--~~Ki~~~VeFP-e~LDLs~yl~~~~~~~~~YeL~AVIvH~G~~~S~~SGHYvayVK~~-~gkWy~FNDskVt~ 821 (1071)
|.+.. ..|++..|.|| +.|||.+|+.+.......|+|+|||+|.|. +.+|||+||+|.. +++||+|||+.|++
T Consensus 300 F~~~~~~~~K~~~~v~fp~~~Ldl~~~~~~~~~~~~~Y~L~avv~H~G~---~~~GHY~a~v~~~~~~~W~~fnD~~V~~ 376 (396)
T 2gfo_A 300 FSYDGRWKQKLQTSVDFPLENLDLSQYVIGPKNNLKKYNLFSVSNHYGG---LDGGHYTAYCKNAARQRWFKFDDHEVSD 376 (396)
T ss_dssp EEECSSSEEECCCEEECCSSCBCCGGGBCSCCSSCCCBEEEEEEEEESC---TTTCEEEEEEEETTTTEEEEEETTEEEE
T ss_pred EECCCCCCEECCCEEECCHHHCCCCCCCCCCCCCCCEEEEEEEEEECCC---CCCCCEEEEECCCCCCCEEEEECCCEEE
T ss_conf 1025761001674485453424566433477778735889999985699---9998307998579999879974887389
Q ss_pred ECCCCCCCCCCEEEEEEECC
Q ss_conf 36774568963899999839
Q 001479 822 VPMSQVMSEGAYMLFYMRSC 841 (1071)
Q Consensus 822 vs~e~Vls~~AYILfY~R~s 841 (1071)
+++++|....||||||+|.+
T Consensus 377 v~~~~v~~~~aYiLfY~r~~ 396 (396)
T 2gfo_A 377 ISVSSVKSSAAYILFYTSLG 396 (396)
T ss_dssp CCHHHHSCTTEEEEEEECC-
T ss_pred CCHHHCCCCCCEEEEEEECC
T ss_conf 88888689985699999759
No 4
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A
Probab=1.00 E-value=1 Score=483.89 Aligned_cols=309 Identities=30% Similarity=0.508 Sum_probs=269.4
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHCCCCCCC---CCCCHHHHHHHHHHHHHHH--HCCCCCCHHHHHHHH
Q ss_conf 68864313999622789999987597799999953457656---8985069999999999997--089998948999999
Q 001479 531 LSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSAC---CGKDWCLMCELEQHVMMLR--ESAGPLSPGRILSHM 605 (1071)
Q Consensus 531 ~gp~GL~NlGNTCYlNSVLQ~Lfsip~Fr~~Ll~~~~~~~~---~~~~~~ll~qL~kL~~~L~--ss~~~isP~~ll~~L 605 (1071)
+|++||.|+||||||||+||+|+++|+|+++++...+.... .....+++++|+.|+..|+ .....+.|..|+..+
T Consensus 7 ~g~~GL~N~GNtCY~NsvLQ~L~~~~~~r~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~p~~~~~~l 86 (348)
T 3nhe_A 7 QGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQTIWTSSPNDVVSPSEFKTQI 86 (348)
T ss_dssp CSCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTGGGGTSCSSCCTTHHHHHHHHHHHHHHTTCCTTCEECCHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
T ss_conf 99977875883479889999996679999998524466761468873118999999999999717898724899999999
Q ss_pred HHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC------------------CCCCCCCCCCCCEEEEEEE
Q ss_conf 8301236998867499999999999999985304999888976------------------4445200113461887599
Q 001479 606 RSISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPR------------------LQETTFIQHTFGGRLWSKV 667 (1071)
Q Consensus 606 ~k~~~~F~~g~QQDA~EFL~~LLd~Le~e~l~~~~~e~k~d~~------------------~~~~siI~~lF~G~l~s~i 667 (1071)
....+.|..++||||+|||.+||+.|++++............. ....++|.++|+|++.+.+
T Consensus 87 ~~~~~~f~~~~QqDa~Efl~~lLd~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~g~~~~~~ 166 (348)
T 3nhe_A 87 QRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNPENLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSL 166 (348)
T ss_dssp HHHSGGGSSSCCBCHHHHHHHHHHHHHHHHCSCSSCCCCCCCCCTTSCHHHHHHHHHHHHHTTCCCHHHHHHCEEEEEEE
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEE
T ss_conf 98606407987447999999999999998753046788775222468822778999999875069845555124999899
Q ss_pred EECCCCCCCCCCCCCEEEEEEEECC---CCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCEEEEEEE
Q ss_conf 9657898763333112468852054---1128999972179976899874335545631001479987206945799986
Q 001479 668 KCLRCSHESERYENIMDLTLEIYGW---VESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLK 744 (1071)
Q Consensus 668 kC~~Cg~~S~~~E~f~~LsL~I~~~---~~sLed~L~~f~~~E~Ldgdnky~C~~Ck~k~~A~K~~~I~slP~VLiIqLk 744 (1071)
+|..|++.+.+.++|++|+|+|+.. ..+|++||+.|+..|.++|+|+|.|++|+.++.+.|+..|.++|+||+|||+
T Consensus 167 ~C~~C~~~s~~~e~f~~LsL~i~~~~~~~~sl~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~k~~~i~~lP~vL~i~lk 246 (348)
T 3nhe_A 167 TCTDCGYCSTVFDPFWDLSLPIAKRGYPEVTLMDCMRLFTKEDVLDGDEKPTCCRCRGRKRCIKKFSIQRFPKILVLHLK 246 (348)
T ss_dssp EETTTCCEEEEEEEESSEEECCCSSCSSCEEHHHHHHHHHSCEEECGGGCCEETTTTEECCEEEEEEEEECCSEEEEEEC
T ss_pred ECCCCCCEEEEECCCEEEEEECCCCCCCCCCHHHHHHHHCCCEEECCCCCEECCCCCCCCCEEEEEEEECCCCEEEEEEE
T ss_conf 94899988644446547764279855677789999987468057168885678888885648999881329865799987
Q ss_pred EECCCC--CCCCCCEEECC-CCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCEEEEEEECC-CCCEEEECCCEEE
Q ss_conf 301232--34343047568-6677777547899999942699999996588999996499999979-9979998199024
Q 001479 745 RFQEGR--YGKINKCITFP-EMLDMMPFMTGTGDTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDM-QGTWFRIDDTQVH 820 (1071)
Q Consensus 745 RF~~~~--~~Ki~~~VeFP-e~LDLs~yl~~~~~~~~~YeL~AVIvH~G~~~S~~SGHYvayVK~~-~gkWy~FNDskVt 820 (1071)
||.... ..|++..|.|| +.|||.+|+..... ...|+|+|||+|.|.. .+|||+||+|.. +++||+|||+.|+
T Consensus 247 Rf~~~~~~~~K~~~~v~fp~~~ldl~~~~~~~~~-~~~Y~L~avv~H~G~~---~~GHY~~~~~~~~~~~W~~~nD~~V~ 322 (348)
T 3nhe_A 247 RFSESRIRTSKLTTFVNFPLRDLDLREFASENTN-HAVYNLYAVSNHSGTT---MGGHYTAYCRSPGTGEWHTFNDSSVT 322 (348)
T ss_dssp CBCCCSSCCCBCCCCEECCSSCEECGGGBCTTCC-CCEEEEEEEEEEEECS---SCEEEEEEEECTTTCCEEEEETTEEE
T ss_pred CCCCCCCCEEECCCCEECCCCCCCHHHHCCCCCC-CCCEEEEEEEECCCCC---CCCCCEEEECCCCCCCEEEEECCCCE
T ss_conf 5345677414568623034775877660678889-9867999999704899---99643888816998937998389806
Q ss_pred EECCCCCCCCCCEEEEEEECCCC
Q ss_conf 63677456896389999983999
Q 001479 821 PVPMSQVMSEGAYMLFYMRSCPR 843 (1071)
Q Consensus 821 ~vs~e~Vls~~AYILfY~R~s~~ 843 (1071)
++++++|....||||||+|.++.
T Consensus 323 ~v~~~~v~~~~aY~LfY~r~~~~ 345 (348)
T 3nhe_A 323 PMSSSQVRTSDAYLLFYELASPP 345 (348)
T ss_dssp EECGGGTCCTTEEEEEEEECC--
T ss_pred ECCHHHCCCCCCEEEEEEECCCC
T ss_conf 99888857898369999964877
No 5
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A
Probab=1.00 E-value=1 Score=483.84 Aligned_cols=308 Identities=25% Similarity=0.322 Sum_probs=261.5
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHCCCCC--CC-CCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 688643139996227899999875977999999534576--56-898506999999999999708999894899999983
Q 001479 531 LSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSS--AC-CGKDWCLMCELEQHVMMLRESAGPLSPGRILSHMRS 607 (1071)
Q Consensus 531 ~gp~GL~NlGNTCYlNSVLQ~Lfsip~Fr~~Ll~~~~~~--~~-~~~~~~ll~qL~kL~~~L~ss~~~isP~~ll~~L~k 607 (1071)
..++||.|+||||||||+||+|+++|+|+++++...... .. .....+++++|+.||..|+.....+.|..|+..++.
T Consensus 12 ~~~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~~~v~P~~~~~~l~~ 91 (404)
T 2ayn_A 12 ELPCGLTNLGNTCYMNATVQCIRSVPELKDALKRYAGALRASGEMASAQYITAALRDLFDSMDKTSSSIPPIILLQFLHM 91 (404)
T ss_dssp CCCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTCCCCC------CHHHHHHHHHHHHHHHHHHHCSEECCHHHHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
T ss_conf 99988654770439899999987689999999964510134788885438999999999998638983886999999988
Q ss_pred CCCCCCC------CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC--------CCCCCCCCCCCCCCCEEEEEEEEECCCC
Q ss_conf 0123699------8867499999999999999985304999888--------9764445200113461887599965789
Q 001479 608 ISCQIGD------GSQEDAHEFLRLLVASMQSICLERHGGESKV--------DPRLQETTFIQHTFGGRLWSKVKCLRCS 673 (1071)
Q Consensus 608 ~~~~F~~------g~QQDA~EFL~~LLd~Le~e~l~~~~~e~k~--------d~~~~~~siI~~lF~G~l~s~ikC~~Cg 673 (1071)
.++.|.+ +.||||+|||++||+.|++++.......... .......++|.++|+|++.+.++|..|+
T Consensus 92 ~~~~f~~~~~~~~~~QqDA~Efl~~lLd~L~~~~~~~~~~~~~e~~~~~~~~~~~~~~~s~i~~~F~G~l~s~i~C~~C~ 171 (404)
T 2ayn_A 92 AFPQFAEKGEQGQYLQQDANECWIQMMRVLQQKLEAIEDDSVKETDSSSASAATPSKKKSLIDQFFGVEFETTMKCTESE 171 (404)
T ss_dssp HCGGGGCBCTTSCBCCCCHHHHHHHHHHHHHTTSCCCCCC------------------CCHHHHHTCEEEEEEEEESSSC
T ss_pred HCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHCCEEEEEEEEECCCC
T ss_conf 57002023567886654899999999999998744356775221001221000001137602451567999999825789
Q ss_pred CCC--CCCCCCEEEEEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCEEEEEEEEECCC--
Q ss_conf 876--3333112468852054112899997217997689987433554563100147998720694579998630123--
Q 001479 674 HES--ERYENIMDLTLEIYGWVESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQEG-- 749 (1071)
Q Consensus 674 ~~S--~~~E~f~~LsL~I~~~~~sLed~L~~f~~~E~Ldgdnky~C~~Ck~k~~A~K~~~I~slP~VLiIqLkRF~~~-- 749 (1071)
.++ .+.|+|++|+|+|+....+|++||+.++. |.++ |+|+.|+..+.+.|+.+|.++|+||+|||+||.+.
T Consensus 172 ~~s~s~~~e~f~~Lsl~i~~~~~~l~~~L~~~~~-e~l~----~~c~~c~~~~~~~k~~~i~~lP~vL~i~LkRF~~~~~ 246 (404)
T 2ayn_A 172 EEEVTKGKENQLQLSCFINQEVKYLFTGLKLRLQ-EEIT----KQSPTLQRNALYIKSSKISRLPAYLTIQMVRFFYKEK 246 (404)
T ss_dssp CCCCBCCEEEESSEEEECSSSCCBHHHHHHHTTE-ECCC----CEETTTTEECCEEEEEEEEECCSSEEEEEECBCCCCS
T ss_pred CCCCCEEECCCCEEEEECCCCCCCHHHHHHHHCC-CCEE----ECCHHHCCCCCEEEEEEHHHCCCCEEEEEEEEEEECC
T ss_conf 8168524225746876569985429999987544-0103----6252009830155553172199716999998898246
Q ss_pred --CCCCCCCEEECCCCCCCCCCCCCC-------------------------------------------------CCCCC
Q ss_conf --234343047568667777754789-------------------------------------------------99999
Q 001479 750 --RYGKINKCITFPEMLDMMPFMTGT-------------------------------------------------GDTPP 778 (1071)
Q Consensus 750 --~~~Ki~~~VeFPe~LDLs~yl~~~-------------------------------------------------~~~~~ 778 (1071)
...|++..|.||..|||.+|+... .....
T Consensus 247 ~~~~~Ki~~~v~fP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 326 (404)
T 2ayn_A 247 ESVNAKVLKDVKFPLMLDMYELCTPELQEKMVSFRSKFKDLEDKKVNQQPNTSDKKSSPQKEVKYEPFSFADDIGSNNCG 326 (404)
T ss_dssp SSSCCBCCCCCBCCSEEECGGGBCHHHHHHTTTTTGGGTCTTC----------------------CCCCCSCTTTTCCCS
T ss_pred CCCEECCCCEECCCCEEEHHHHCCHHHHHHCCHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 68310017446468256776744855541020135677655315401333110335555553334555554555768885
Q ss_pred CEEEEEEEEEECCCCCCCCCEEEEEEECCCCCEEEECCCEEEEECCCCCCCCC-------CEEEEEEECCCCCC
Q ss_conf 42699999996588999996499999979997999819902463677456896-------38999998399998
Q 001479 779 LYMLYSVVVHLDTQNASFSGHYVSYIKDMQGTWFRIDDTQVHPVPMSQVMSEG-------AYMLFYMRSCPRPR 845 (1071)
Q Consensus 779 ~YeL~AVIvH~G~~~S~~SGHYvayVK~~~gkWy~FNDskVt~vs~e~Vls~~-------AYILfY~R~s~~~~ 845 (1071)
.|+|+|||+|.|. ++++|||+||+|..+++||+|||+.|+++++++|+... ||||||+|.+...+
T Consensus 327 ~Y~L~avv~H~G~--s~~~GHY~a~v~~~~~~W~~fnD~~V~~v~~~~v~~~~~g~~~~~aYiLfY~r~~~~~~ 398 (404)
T 2ayn_A 327 YYDLQAVLTHQGR--SSSSGHYVSWVKRKQDEWIKFDDDKVSIVTPEDILRLSGGGDWHIAYVLLYGPRRVEIM 398 (404)
T ss_dssp EEEEEEEEEEESS--STTSSEEEEEEEEETTEEEEEBTTBCCCBCHHHHGGGGSSSSSCEEEEEEEECC-----
T ss_pred EEEEEEEEEECCC--CCCCCCEEEEEECCCCEEEEEECCCCEECCHHHHHHHHCCCCCCEEEEEEEEECCCCCC
T ss_conf 3999999995489--99998869999899992899606345666799997630799776289999983477777
No 6
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A
Probab=1.00 E-value=1 Score=483.48 Aligned_cols=308 Identities=32% Similarity=0.499 Sum_probs=265.5
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHCCCCCCC--CCCCHHHHHHHHHHHHHHHHCC--CCCCHHHHHHHHH
Q ss_conf 68864313999622789999987597799999953457656--8985069999999999997089--9989489999998
Q 001479 531 LSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSAC--CGKDWCLMCELEQHVMMLRESA--GPLSPGRILSHMR 606 (1071)
Q Consensus 531 ~gp~GL~NlGNTCYlNSVLQ~Lfsip~Fr~~Ll~~~~~~~~--~~~~~~ll~qL~kL~~~L~ss~--~~isP~~ll~~L~ 606 (1071)
.|++||.|+||||||||+||+|+++|+|+++++...+.... .....++.++|+.|+..|+... ..++|..|+..++
T Consensus 1 TG~~GL~N~GNtCY~NSvLQ~L~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~v~p~~~~~~l~ 80 (355)
T 3i3t_A 1 SGHVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGGGRAQELTEAFADVIGALWHPDSCEAVNPTRFRAVFQ 80 (355)
T ss_dssp --CCCBCCCSSTHHHHHHHHHHHTCHHHHHHHHHTTHHHHC------CHHHHHHHHHHHHTSSCSSCCCBCCHHHHHHHH
T ss_pred CCCCCCEECCCCHHHHHHHHHHHCCHHHHHHHHHCHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
T ss_conf 99747588982669899999986789999999725488756789952699999999999984589887445899999999
Q ss_pred HCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCC------------------C---------------CCCCCC
Q ss_conf 3012369988674999999999999999853049998889------------------7---------------644452
Q 001479 607 SISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVD------------------P---------------RLQETT 653 (1071)
Q Consensus 607 k~~~~F~~g~QQDA~EFL~~LLd~Le~e~l~~~~~e~k~d------------------~---------------~~~~~s 653 (1071)
+..+.|..++||||+|||.+||+.|++++........... + .....+
T Consensus 81 ~~~~~f~~~~QqDA~Efl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 160 (355)
T 3i3t_A 81 KYVPSFSGYSQQDAQEFLKLLMERLHLEINRRGRRAPPILANGPVPSPPRRGGALLEEPELSDDDRANLMWKRYLEREDS 160 (355)
T ss_dssp HHCGGGCSSCCCBHHHHHHHHHHHHHHHHCCC----------------------------CCHHHHHHHHHHHHHHHCCS
T ss_pred HHCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 73842289876678999999999999997654137875235676667644443223577788788999999985231698
Q ss_pred CCCCCCCEEEEEEEEECCCCCCCCCCCCCEEEEEEEECC-----CCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 001134618875999657898763333112468852054-----112899997217997689987433554563100147
Q 001479 654 FIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEIYGW-----VESLEDALTQFTSPEDLDGENMYKCARCATYVRARK 728 (1071)
Q Consensus 654 iI~~lF~G~l~s~ikC~~Cg~~S~~~E~f~~LsL~I~~~-----~~sLed~L~~f~~~E~Ldgdnky~C~~Ck~k~~A~K 728 (1071)
+|.++|+|++.+.++|..|++.+.+.++|++|+|+|+.. ..+|++||+.|+..|.++++|+|+|++|+.++.+.|
T Consensus 161 ~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~lsl~i~~~~~~~~~~sl~~~L~~~~~~e~l~~~n~~~C~~C~~~~~a~k 240 (355)
T 3i3t_A 161 KIVDLFVGQLKSCLKCQACGYRSTTFEVFCDLSLPIPKKGFAGGKVSLRDCFNLFTKEEELESENAPVCDRCRQKTRSTK 240 (355)
T ss_dssp HHHHHHCEEEEEEEEETTTCCEEEEEEEESSEEECCCC-------CBHHHHHHHHHCCEEECGGGCCCCSSSCCCCCEEE
T ss_pred CCCCCCCEEEEEEEEECCCCCCCEEECCCEEECCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCEECCCCCCCCCEEE
T ss_conf 15453357999558938999984022223465256786444567658999999857835458999855988788662379
Q ss_pred EEEEEECCCEEEEEEEEECCCC--CCCCCCEEECC-CCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCEEEEEEE
Q ss_conf 9987206945799986301232--34343047568-66777775478999999426999999965889999964999999
Q 001479 729 QLSIHEAPNILTIVLKRFQEGR--YGKINKCITFP-EMLDMMPFMTGTGDTPPLYMLYSVVVHLDTQNASFSGHYVSYIK 805 (1071)
Q Consensus 729 ~~~I~slP~VLiIqLkRF~~~~--~~Ki~~~VeFP-e~LDLs~yl~~~~~~~~~YeL~AVIvH~G~~~S~~SGHYvayVK 805 (1071)
+..|.++|+||+|||+||.... ..|++..|.|| +.|||.+|+.... +...|+|+|||+|.|. +++|||+||+|
T Consensus 241 ~~~i~~lP~vL~i~lkRF~~~~~~~~K~~~~v~fp~~~l~l~~~~~~~~-~~~~Y~L~avv~H~G~---~~~GHY~~~~~ 316 (355)
T 3i3t_A 241 KLTVQRFPRILVLHLNRFSASRGSIKKSSVGVDFPLQRLSLGDFASDKA-GSPVYQLYALCNHSGS---VHYGHYTALCR 316 (355)
T ss_dssp EEEEEECCSEEEEEECCEECCSSCCEECCCCCBCCSSCEECGGGBC-----CCEEEEEEEEEEEEE---TTEEEEEEEEE
T ss_pred EEECCCCCHHEEEEHHHEECCCCCCEECCCCEECCCCCCCCHHHCCCCC-CCCCEEEEEEEEECCC---CCCCEEEEEEE
T ss_conf 9881139813099760200378980478861607765467302115899-9964599999882678---99980799997
Q ss_pred CCCCCEEEECCCEEEEECCCCCCCCCCEEEEEEECCCC
Q ss_conf 79997999819902463677456896389999983999
Q 001479 806 DMQGTWFRIDDTQVHPVPMSQVMSEGAYMLFYMRSCPR 843 (1071)
Q Consensus 806 ~~~gkWy~FNDskVt~vs~e~Vls~~AYILfY~R~s~~ 843 (1071)
. +++||+|||+.|+++++++|....||||||+|.+..
T Consensus 317 ~-~~~W~~~nD~~V~~v~~~~v~~~~aYiLfY~r~~~~ 353 (355)
T 3i3t_A 317 C-QTGWHVYNDSRVSPVSENQVASSEGYVLFYQLMQEP 353 (355)
T ss_dssp E-TTEEEEEETTEEEEECHHHHHTSCCSEEEEEEC---
T ss_pred C-CCEEEEECCCCCEECCHHHCCCCCCEEEEEEECCCC
T ss_conf 2-992899819871798899907898679999960688
No 7
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A
Probab=1.00 E-value=1 Score=476.82 Aligned_cols=307 Identities=28% Similarity=0.516 Sum_probs=262.2
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHCCCCCCC--CCCCHHHHHHHHHHHHHHHHCC----------CCCCH
Q ss_conf 68864313999622789999987597799999953457656--8985069999999999997089----------99894
Q 001479 531 LSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSAC--CGKDWCLMCELEQHVMMLRESA----------GPLSP 598 (1071)
Q Consensus 531 ~gp~GL~NlGNTCYlNSVLQ~Lfsip~Fr~~Ll~~~~~~~~--~~~~~~ll~qL~kL~~~L~ss~----------~~isP 598 (1071)
+|++||.|+||||||||+||+|+++|+|+++++...+...+ ..+..++.++|.+++..++... ..+.|
T Consensus 139 ~G~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~ 218 (476)
T 3mhs_A 139 DGLSGLINMGSTCFMSSILQCLIHNPYFIRHSMSQIHSNNCKVRSPDKCFSCALDKIVHELYGALNTKQASSSSTSTNRQ 218 (476)
T ss_dssp TCCCCCCCSSSTHHHHHHHHHHHTCHHHHHHHHTTHHHHHCSSCCTTTCHHHHHHHHHHHHHSCCCC--------CCCSC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 89978770884679989999986789999998745035544578864105899999999996120333345666556575
Q ss_pred HHHHHHH---HHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC--CCCCCCCCCCCCCCCCEEEEEEEEECCCC
Q ss_conf 8999999---830123699886749999999999999998530499988--89764445200113461887599965789
Q 001479 599 GRILSHM---RSISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGESK--VDPRLQETTFIQHTFGGRLWSKVKCLRCS 673 (1071)
Q Consensus 599 ~~ll~~L---~k~~~~F~~g~QQDA~EFL~~LLd~Le~e~l~~~~~e~k--~d~~~~~~siI~~lF~G~l~s~ikC~~Cg 673 (1071)
..+...+ .+.++.|..++||||+|||.+||+.|++++......... ........++|.++|+|.+.++++|..|+
T Consensus 219 ~~~~~~l~~~~~~~~~f~~~~QqDA~EFl~~LLd~L~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~G~l~~~~~C~~C~ 298 (476)
T 3mhs_A 219 TGFIYLLTCAWKINQNLAGYSQQDAHEFWQFIINQIHQSYVLDLPNAKEVSRANNKQCECIVHTVFEGSLESSIVCPGCQ 298 (476)
T ss_dssp HHHHHHHHHHHHHCGGGSSSSCEEHHHHHHHHHHHHHHHHHHHCCC-------CCCSCCSHHHHHSCEEEEEEEECTTTC
T ss_pred CHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCEEEEEEEEECCCC
T ss_conf 00899999988745123888775999999999999999976415665334544556688800211325999889989999
Q ss_pred CCCC-CCCCCEEEEEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCEEEEEEEEECCC---
Q ss_conf 8763-333112468852054112899997217997689987433554563100147998720694579998630123---
Q 001479 674 HESE-RYENIMDLTLEIYGWVESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQEG--- 749 (1071)
Q Consensus 674 ~~S~-~~E~f~~LsL~I~~~~~sLed~L~~f~~~E~Ldgdnky~C~~Ck~k~~A~K~~~I~slP~VLiIqLkRF~~~--- 749 (1071)
.++. +.++|++|+|+|+. ..+|+++|+.|+..|.+++.+ |+|++|+.++.+.|+..|.++|+||+|||+||...
T Consensus 299 ~~s~~~~e~f~~LsL~i~~-~~sl~~~L~~~~~~E~l~~~~-~~C~~C~~~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~ 376 (476)
T 3mhs_A 299 NNSKTTIDPFLDLSLDIKD-KKKLYECLDSFHKKEQLKDFN-YHCGECNSTQDAIKQLGIHKLPSVLVLQLKRFEHLLNG 376 (476)
T ss_dssp CCCEEEEEEESCEEECCTT-CCBHHHHHHHHHCCEECSSCC-CEETTTTEECCCEEEEEEEEBCSEEEEEECCEEECTTS
T ss_pred CEECCCCCCHHHHCCCHHH-HHHHHHHHHHHCCHHHCCCCC-CCCCCCCCCCCEEEEEECCCCCCCEEEEEEECCCCCCC
T ss_conf 8517865666661320124-668999999863842214778-76886688565789987014971139984402154899
Q ss_pred CCCCCCCEEECCCCCCCCCCCCCCCC---------CCCCEEEEEEEEEECCCCCCCCCEEEEEEECCCCCEEEECCCEEE
Q ss_conf 23434304756866777775478999---------999426999999965889999964999999799979998199024
Q 001479 750 RYGKINKCITFPEMLDMMPFMTGTGD---------TPPLYMLYSVVVHLDTQNASFSGHYVSYIKDMQGTWFRIDDTQVH 820 (1071)
Q Consensus 750 ~~~Ki~~~VeFPe~LDLs~yl~~~~~---------~~~~YeL~AVIvH~G~~~S~~SGHYvayVK~~~gkWy~FNDskVt 820 (1071)
...|++..|.||..|||.+|+..... ....|+|+|||+|.|. +++|||+||+|..+++||+|||+.|+
T Consensus 377 ~~~K~~~~V~fP~~Ldl~~~~~~~~~~~~~~~~~~~~~~Y~L~avv~H~G~---~~~GHY~a~vr~~~~~W~~fnD~~V~ 453 (476)
T 3mhs_A 377 SNRKLDDFIEFPTYLNMKNYCSTKEKDKHSENGKVPDIIYELIGIVSHKGT---VNEGHYIAFCKISGGQWFKFNDSMVS 453 (476)
T ss_dssp CEEECCCCCBCCSEEECGGGBSCCBCCC--CCCBCCCEEEEEEEEEEEEEC---SSSEEEEEEEECTTSCEEEEETTEEE
T ss_pred CEEECCEEECCCCEEECHHHCCCCCCCCCCCCCCCCCCCEEEEEEEEECCC---CCCCCEEEEEECCCCCEEEEECCCEE
T ss_conf 717898787389700034323753234322346789973899999996899---98875499998898918999498158
Q ss_pred EECCCCCCCCCCEEEEEEECCC
Q ss_conf 6367745689638999998399
Q 001479 821 PVPMSQVMSEGAYMLFYMRSCP 842 (1071)
Q Consensus 821 ~vs~e~Vls~~AYILfY~R~s~ 842 (1071)
++++++|+...||||||+|++.
T Consensus 454 ~v~~~~v~~~~aYiLfY~r~~~ 475 (476)
T 3mhs_A 454 SISQEEVLKEQAYLLFYTIRQV 475 (476)
T ss_dssp EECHHHHTTSCEEEEEEEEEEE
T ss_pred ECCHHHHCCCCCEEEEEEEECC
T ss_conf 9998995669867999998438
No 8
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9
Probab=1.00 E-value=1 Score=476.47 Aligned_cols=288 Identities=24% Similarity=0.321 Sum_probs=255.0
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHCCCCCCCCCC-------CHHHHHHHHHHHHHHHHCC-CCCCHHHHH
Q ss_conf 68864313999622789999987597799999953457656898-------5069999999999997089-998948999
Q 001479 531 LSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGK-------DWCLMCELEQHVMMLRESA-GPLSPGRIL 602 (1071)
Q Consensus 531 ~gp~GL~NlGNTCYlNSVLQ~Lfsip~Fr~~Ll~~~~~~~~~~~-------~~~ll~qL~kL~~~L~ss~-~~isP~~ll 602 (1071)
.+++||.|+||||||||+||+|+++|+|+++++..........+ ..+++++|++||..|+... ..+.|..|+
T Consensus 22 ~~~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~ll~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~~~~v~p~~~~ 101 (415)
T 1vjv_A 22 QLPVGFKNMGNTCYLNATLQALYRVNDLRDMILNYNPSQGVSNSGAQDEEIHKQIVIEMKRCFENLQNKSFKSVLPVVLL 101 (415)
T ss_dssp CCCCEECCCSSCHHHHHHHHHHHHSHHHHHHHHTCCGGGCCSCTTSTTHHHHHHHHHHHHHHHHHHHCC-CCEECCHHHH
T ss_pred CCCCCCEECCCCCHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHH
T ss_conf 89888773885139999999997479999999712654466776433444113899999999999860799843779999
Q ss_pred HHHHHCCCCCC-------CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCC
Q ss_conf 99983012369-------98867499999999999999985304999888976444520011346188759996578987
Q 001479 603 SHMRSISCQIG-------DGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHE 675 (1071)
Q Consensus 603 ~~L~k~~~~F~-------~g~QQDA~EFL~~LLd~Le~e~l~~~~~e~k~d~~~~~~siI~~lF~G~l~s~ikC~~Cg~~ 675 (1071)
..++..++.|. .++||||+|||.+||+.|++++.. ++|.++|+ .+.+.++|..|+..
T Consensus 102 ~~l~~~~~~f~~~~~~~~~~~QqDa~Efl~~lLd~L~~~~~~---------------~~i~~~F~-~~~~~~~C~~C~~~ 165 (415)
T 1vjv_A 102 NTLRKCYPQFAERDSQGGFYKQQDAEELFTQLFHSMSIVFGD---------------KFSEDFRI-QFKTTIKDTANDND 165 (415)
T ss_dssp HHHHHHCGGGGCBC----CBCCCCHHHHHHHHHHHHHHHHTH---------------HHHTTTCE-EEEEEEEETTEEEE
T ss_pred HHHHHHCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC---------------CHHHHHHH-HHEEEEEECCCCCC
T ss_conf 999875850210466777766668999999999999987343---------------46999998-61179997799987
Q ss_pred C--CCCCCCEEEEEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCEEEEEEEEECCCC---
Q ss_conf 6--33331124688520541128999972179976899874335545631001479987206945799986301232---
Q 001479 676 S--ERYENIMDLTLEIYGWVESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQEGR--- 750 (1071)
Q Consensus 676 S--~~~E~f~~LsL~I~~~~~sLed~L~~f~~~E~Ldgdnky~C~~Ck~k~~A~K~~~I~slP~VLiIqLkRF~~~~--- 750 (1071)
+ .+.|+|++|+|+|+....+|++||+.++. |.++ |+|+.|+....+.|+.+|.++|+||+|||+||.+..
T Consensus 166 s~s~~~e~f~~Lsl~i~~~~~~l~~~L~~~~~-e~i~----~~c~~c~~~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~ 240 (415)
T 1vjv_A 166 ITVKENESDSKLQCHISGTTNFMRNGLLEGLN-EKIE----KRSDLTGANSIYSVEKKISRLPKFLTVQYVRFFWKRSTN 240 (415)
T ss_dssp EEEECCCEESCEEECCCTTCCBHHHHHHHHHE-EC-------------CCCCEEEEEEEEECBSEEEEEECCEEEETTTT
T ss_pred CCCCCCCCCEEEEECCCCCCCHHHHHHHHHHH-HHHH----HCCCCCCCCCCEEEEEECCCCCCEEEEEEEEEEEECCCC
T ss_conf 46313545436651256661238999998744-5553----146121786427888770269971599998899837888
Q ss_pred -CCCCCCEEECCCCCCCCCCCCCC--------------------------------------------------------
Q ss_conf -34343047568667777754789--------------------------------------------------------
Q 001479 751 -YGKINKCITFPEMLDMMPFMTGT-------------------------------------------------------- 773 (1071)
Q Consensus 751 -~~Ki~~~VeFPe~LDLs~yl~~~-------------------------------------------------------- 773 (1071)
..|++..|.||..|||.+|+...
T Consensus 241 ~~~Ki~~~V~FP~~Ldl~~~~~~~~~~~~~~~r~~~~~~~~~~~e~~~~~k~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 320 (415)
T 1vjv_A 241 KKSKILRKVVFPFQLDVADMLTPEYAAEKVKVRDELRKVEKEKNEKEREIKRRKFDPSSSENVMTPREQYETQVALNESE 320 (415)
T ss_dssp EEEECCCCCBCCSEEECGGGBCHHHHHHHHHHHHHHHHHHHHHHHC----------------CCCHHHHHHHHHHHHHHH
T ss_pred CCHHHCCCCCCCCEEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCHHHHHHH
T ss_conf 40431676479957676784283332221215799998753333456655310225554444345310222012567765
Q ss_pred -------------------CCCCCCEEEEEEEEEECCCCCCCCCEEEEEEEC--CCCCEEEECCCEEEEECCCCCCCCC-
Q ss_conf -------------------999994269999999658899999649999997--9997999819902463677456896-
Q 001479 774 -------------------GDTPPLYMLYSVVVHLDTQNASFSGHYVSYIKD--MQGTWFRIDDTQVHPVPMSQVMSEG- 831 (1071)
Q Consensus 774 -------------------~~~~~~YeL~AVIvH~G~~~S~~SGHYvayVK~--~~gkWy~FNDskVt~vs~e~Vls~~- 831 (1071)
......|+|+|||+|.|. ++.+|||+||+|. .+++||+|||+.|+++++++|....
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVv~H~G~--s~~~GHY~a~vr~~~~~~~W~~fnD~~V~~v~~~~v~~~~~ 398 (415)
T 1vjv_A 321 KDQWLEEYKKHFPPNLEKGENPSCVYNLIGVITHQGA--NSESGHYQAFIRDELDENKWYKFNDDKVSVVEKEKIESLAG 398 (415)
T ss_dssp HHHHHHHHHTTSCTTCCTTBCSSSEEEEEEEEEEESS--STTSSEEEEEEECSSCTTCEEEEETTEEEEECHHHHHGGGC
T ss_pred HHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEEECCC--CCCCCCEEEEEECCCCCCCEEEEECCCCEECCHHHHHHHCC
T ss_conf 5443332053334323235678843889999993589--99998879999478889948996788576727999764207
Q ss_pred ------CEEEEEEECC
Q ss_conf ------3899999839
Q 001479 832 ------AYMLFYMRSC 841 (1071)
Q Consensus 832 ------AYILfY~R~s 841 (1071)
||||||+|+.
T Consensus 399 g~~~~~aYiLfY~r~~ 414 (415)
T 1vjv_A 399 GGESDSALILMYKGFG 414 (415)
T ss_dssp CTTSCEEEEEEEEETT
T ss_pred CCCCCEEEEEEEEECC
T ss_conf 9876607999999547
No 9
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=1.00 E-value=1 Score=473.12 Aligned_cols=294 Identities=26% Similarity=0.417 Sum_probs=256.6
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCC
Q ss_conf 86886431399962278999998759779999995345765689850699999999999970899989489999998301
Q 001479 530 LLSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESAGPLSPGRILSHMRSIS 609 (1071)
Q Consensus 530 ~~gp~GL~NlGNTCYlNSVLQ~Lfsip~Fr~~Ll~~~~~~~~~~~~~~ll~qL~kL~~~L~ss~~~isP~~ll~~L~k~~ 609 (1071)
.+|++||.|+||||||||+||+|+++|+|+++++..... ......++.++|++||..|+.+..++.|..|+..++ .
T Consensus 172 ~~g~~GL~NlGnTCYmNSvLQ~L~~~~~fr~~~~~~~~~--~~~~~~~~~~~l~~lf~~l~~~~~~~~~~~l~~~~~--~ 247 (522)
T 2f1z_A 172 HTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTE--GDDSSKSVPLALQRVFYELQHSDKPVGTKKLTKSFG--W 247 (522)
T ss_dssp TTSCCCBCCC--CTTHHHHHHHHHTCHHHHHHHHTCCCC--SSCTTTCHHHHHHHHHHHHHHCSSCBCCTTHHHHTC--C
T ss_pred CCCCCCEECCCCCHHHHHHHHHHHCCHHHHHHHHHCCCC--CCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHCC--C
T ss_conf 678544113863188889999986129999999606656--776565289999999999863798557678886418--7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCEEEEEEE
Q ss_conf 23699886749999999999999998530499988897644452001134618875999657898763333112468852
Q 001479 610 CQIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEI 689 (1071)
Q Consensus 610 ~~F~~g~QQDA~EFL~~LLd~Le~e~l~~~~~e~k~d~~~~~~siI~~lF~G~l~s~ikC~~Cg~~S~~~E~f~~LsL~I 689 (1071)
+.|..+.||||+|||++||+.|++++... ...++|.++|+|++.+.++|..|++.+.+.|+|++|+|+|
T Consensus 248 ~~~~~~~QqDa~Efl~~LLd~L~~~l~~~-----------~~~s~i~~lF~G~~~s~i~C~~C~~~s~~~e~f~~LsL~i 316 (522)
T 2f1z_A 248 ETLDSFMQHDVQELCRVLLDNVENKMKGT-----------CVEGTIPKLFRGKMVSYIQCKEVDYRSDRREDYYDIQLSI 316 (522)
T ss_dssp CTTTSSTTSCHHHHHHHHHHHHHHHHTTS-----------TTTTHHHHHHCEEEEEEECCSSSCCCCCEEEEESCEEECC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHCCCC-----------CCCCCHHHHEEEEEEEEEECCCCCCEEEEEEEEEEEEEEE
T ss_conf 65787626469999999999998641588-----------6566021313379999887278995553663207898884
Q ss_pred ECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCEEEEEEEEECCCC----CCCCCCEEECCCCCC
Q ss_conf 0541128999972179976899874335545631001479987206945799986301232----343430475686677
Q 001479 690 YGWVESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQEGR----YGKINKCITFPEMLD 765 (1071)
Q Consensus 690 ~~~~~sLed~L~~f~~~E~Ldgdnky~C~~Ck~k~~A~K~~~I~slP~VLiIqLkRF~~~~----~~Ki~~~VeFPe~LD 765 (1071)
++ ..+|++||..|+..|.++|+|+|.|+.|+ ++.|.|+..|.++|+||+|||+||.+.. ..|+++.|.||..||
T Consensus 317 ~~-~~~l~~~L~~~~~~E~l~~~n~~~C~~c~-~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~v~fp~~Ld 394 (522)
T 2f1z_A 317 KG-KKNIFESFVDYVAVEQLDGDNKYDAGEHG-LQEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQLP 394 (522)
T ss_dssp TT-CCBHHHHHHHHTCEEEECTTSCBCCGGGC-SBCEEEEEEESCCCSEEEEEECCEEECSSSSCEEECCCCCBCCSEEE
T ss_pred CC-CCCCHHHHHHHHCEEECCCCCEEECCCCC-CCCEEEEEEEECCCCEEEEEEEEEEECCCCCCCEECCCEEECCCEEC
T ss_conf 78-64406799874050222776204047677-65367999934199638999874788166785267682796788134
Q ss_pred CCCCCCCCC-CCCCCEEEEEEEEEECCCCCCCCCEEEEEEEC-CCCCEEEECCCEEEEECCCCCCC--------------
Q ss_conf 777547899-99994269999999658899999649999997-99979998199024636774568--------------
Q 001479 766 MMPFMTGTG-DTPPLYMLYSVVVHLDTQNASFSGHYVSYIKD-MQGTWFRIDDTQVHPVPMSQVMS-------------- 829 (1071)
Q Consensus 766 Ls~yl~~~~-~~~~~YeL~AVIvH~G~~~S~~SGHYvayVK~-~~gkWy~FNDskVt~vs~e~Vls-------------- 829 (1071)
|.+|+.... .....|+|+|||+|.|.. ++|||+||+|. .+++||+|||+.|++++.++|+.
T Consensus 395 l~~~~~~~~~~~~~~Y~L~avv~H~G~~---~~GHY~a~v~~~~~~~W~~fnD~~V~~v~~~~v~~~~~Gg~~~~~~~~~ 471 (522)
T 2f1z_A 395 LDEFLQKTDPKDPANYILHAVLVHSGDN---HGGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHDDDLSVRH 471 (522)
T ss_dssp CGGGBSSCCTTSCCEEEEEEEEEEECSS---SCSEEEEEECTTSSSCCEEEETTEEEECCHHHHSTTSSCCC--------
T ss_pred CHHHHCCCCCCCCCEEEEEEEEEECCCC---CCCEEEEEEECCCCCCEEEEECCEEEECCHHHHHHHHCCCCCCCCCCCC
T ss_conf 4354054468998379999999964569---9866899994389998999978324899899998863388754334576
Q ss_pred -CCCEEEEEEECCCC
Q ss_conf -96389999983999
Q 001479 830 -EGAYMLFYMRSCPR 843 (1071)
Q Consensus 830 -~~AYILfY~R~s~~ 843 (1071)
..||||||+|.+..
T Consensus 472 ~~~aYiLfY~r~~~~ 486 (522)
T 2f1z_A 472 CTNAYMLVYIRESKL 486 (522)
T ss_dssp CEEEEEEEEEETTSH
T ss_pred CCCEEEEEEEECCCH
T ss_conf 893499999988825
No 10
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A
Probab=1.00 E-value=1 Score=470.12 Aligned_cols=293 Identities=26% Similarity=0.420 Sum_probs=256.5
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCC
Q ss_conf 68864313999622789999987597799999953457656898506999999999999708999894899999983012
Q 001479 531 LSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESAGPLSPGRILSHMRSISC 610 (1071)
Q Consensus 531 ~gp~GL~NlGNTCYlNSVLQ~Lfsip~Fr~~Ll~~~~~~~~~~~~~~ll~qL~kL~~~L~ss~~~isP~~ll~~L~k~~~ 610 (1071)
+|++||.|+||||||||+||+|+++|+|+++++..... ......++.++|+.||..|+.+..++.|..|+..++ ++
T Consensus 4 ~g~~GL~NlGnTCYmNSvLQ~L~~~~~~r~~~~~~~~~--~~~~~~~~~~~l~~lf~~l~~~~~~~~~~~l~~~~~--~~ 79 (353)
T 1nb8_A 4 TGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTE--GDDSSKSVPLALQRVFYELQHSDKPVGTKKLTKSFG--WE 79 (353)
T ss_dssp SSCCCBCCCSTTTTHHHHHHHHHTCHHHHHHHHTSCCT--TSCTTTCHHHHHHHHHHHHHHCSSCBCCHHHHHHHT--CC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHCCCC--CCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHCC--CC
T ss_conf 89987564745449899999997779999999837877--776544099999999998860588778779986418--87
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCEEEEEEEE
Q ss_conf 36998867499999999999999985304999888976444520011346188759996578987633331124688520
Q 001479 611 QIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEIY 690 (1071)
Q Consensus 611 ~F~~g~QQDA~EFL~~LLd~Le~e~l~~~~~e~k~d~~~~~~siI~~lF~G~l~s~ikC~~Cg~~S~~~E~f~~LsL~I~ 690 (1071)
.|..+.||||+|||.+||+.|++++... ...++|.++|+|++.+.++|..|++.+.+.++|++|+|+|+
T Consensus 80 ~~~~~~QqDA~EFl~~LLd~L~~~~~~~-----------~~~s~i~~~F~g~~~~~i~C~~C~~~s~~~e~f~~LsL~i~ 148 (353)
T 1nb8_A 80 TLDSFMQHDVQELCRVLLDNVENKMKGT-----------CVEGTIPKLFRGKMVSYIQCKEVDYRSDRREDYYDIQLSIK 148 (353)
T ss_dssp BTTTTTTSCHHHHHHHHHHHHHHHTTTS-----------TTTTHHHHHHCEEEEEEEEESSSCCEEEEEEEESCEEECCT
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHCCC-----------CCCCHHHHHCEEEEEEEEEECCCCCEECEEEEEEEEEEEEC
T ss_conf 7786532639999999999999884488-----------75551235030589999992568970022223279988979
Q ss_pred CCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCEEEEEEEEECCCC----CCCCCCEEECCCCCCC
Q ss_conf 541128999972179976899874335545631001479987206945799986301232----3434304756866777
Q 001479 691 GWVESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQEGR----YGKINKCITFPEMLDM 766 (1071)
Q Consensus 691 ~~~~sLed~L~~f~~~E~Ldgdnky~C~~Ck~k~~A~K~~~I~slP~VLiIqLkRF~~~~----~~Ki~~~VeFPe~LDL 766 (1071)
+ ..+|+++|..|+..|.++|+|+|.|+.|+ ++.+.|+..|.++|+||+|||+||.+.. ..|+++.|.||+.|||
T Consensus 149 ~-~~~l~~~L~~~~~~E~l~~~~~~~C~~c~-~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~K~~~~v~fp~~Ldl 226 (353)
T 1nb8_A 149 G-KKNIFESFVDYVAVEQLDGDNKYDAGEHG-LQEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQLPL 226 (353)
T ss_dssp T-CSBHHHHHHHHTCCEEECTTTCEECGGGC-EECEEEEEEESCCCSEEEEEECCCC--------CCCCCCCBCCSEEEC
T ss_pred C-CCCHHHHHHHHHCCCCCCCCCCCCCCCCC-CEEEEEEEEHHCCCCCEEEEEECEEEECCCCCEEECCCEEECCCEEEH
T ss_conf 9-76457799985173424787531477675-175689888400997259998367984235950755828977976652
Q ss_pred CCCCCCCC-CCCCCEEEEEEEEEECCCCCCCCCEEEEEEEC-CCCCEEEECCCEEEEECCCCCCC---------------
Q ss_conf 77547899-99994269999999658899999649999997-99979998199024636774568---------------
Q 001479 767 MPFMTGTG-DTPPLYMLYSVVVHLDTQNASFSGHYVSYIKD-MQGTWFRIDDTQVHPVPMSQVMS--------------- 829 (1071)
Q Consensus 767 s~yl~~~~-~~~~~YeL~AVIvH~G~~~S~~SGHYvayVK~-~~gkWy~FNDskVt~vs~e~Vls--------------- 829 (1071)
.+|+.... .....|+|+|||+|.|.. ++|||+||+|. .+++||+|||+.|+++++++|+.
T Consensus 227 ~~~~~~~~~~~~~~Y~L~avv~H~G~~---~~GHY~a~v~~~~~~~W~~fnD~~V~~v~~~~v~~~~~gg~~~~~~~~~~ 303 (353)
T 1nb8_A 227 DEFLQKTDPKDPANYILHAVLVHSGDN---HGGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHDDDLSVRHC 303 (353)
T ss_dssp GGGBSSCCTTSCCEEEEEEEEEEESST---TCCCEEEEECTTSSSCCEEEETTEEEECCHHHHTGGGSCCC-------CC
T ss_pred HHHHCCCCCCCCCEEEEEEEEEEECCC---CCCEEEEEEECCCCCCEEEEECCCEEECCHHHHHHHHCCCCCCCCCCCCC
T ss_conf 352213378998159999999974789---88679999945999988999896028978899988723897654446768
Q ss_pred CCCEEEEEEECCCC
Q ss_conf 96389999983999
Q 001479 830 EGAYMLFYMRSCPR 843 (1071)
Q Consensus 830 ~~AYILfY~R~s~~ 843 (1071)
..||||||+|.+..
T Consensus 304 ~~aYiLfY~r~~~~ 317 (353)
T 1nb8_A 304 TNAYMLVYIRESKL 317 (353)
T ss_dssp EEEEEEEEEETTTH
T ss_pred CEEEEEEEEECCHH
T ss_conf 80799999988534
Done!