BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001480
(1071 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv
Resistance Locus 8)
pdb|4D9S|B Chain B, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv
Resistance Locus 8)
Length = 406
Score = 134 bits (337), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 103/329 (31%), Positives = 154/329 (46%), Gaps = 35/329 (10%)
Query: 157 VFSWGSGANYQLGTGNAHLQKLPCKVDSLHGFVIKLISAAKFHSVAVTSLG-EVYTWGYG 215
V SWG G + QLG G+A + P ++ +L G I ++ H+VA + G EVY+WG+G
Sbjct: 37 VCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWG 96
Query: 216 RGGRLGHPDFDIHSGQAAVITPRRVTSGLGSRRVKTIAAAKHHTVLATEGGEVFTWGSNR 275
GRLGH + + + TP + + L R+K IA H + T GEV +WG N+
Sbjct: 97 DFGRLGHGN------SSDLFTPLPIKA-LHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQ 149
Query: 276 EGQLGYTSVDTQPTPRRVSSLK-LKIIAVAAANKHTAVVSESGEVFTWGCNREGQLGYGT 334
GQLG + P+++ + + ++I VAA +HTA V+E G+++ WG R G LG G
Sbjct: 150 NGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLG- 208
Query: 335 SNSASNYTPRVVESLKGKDLVGVAAAKYHTIVLGADGERVIVARNLKKSGS--------- 385
+ P V S G+ + VA HTI + G + K G
Sbjct: 209 -DRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSG--ALYTYGWSKYGQLGHGDLEDH 265
Query: 386 -TPLKFHRKIKLHVVSIAAGMVHSTALTEDGALFYWA---------SSDPDLRCQ--QLY 433
P K + I+ G H+ ALT DG L+ W ++ D +C Q+
Sbjct: 266 LIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLD-QCSPVQVR 324
Query: 434 SMCGRNVVSISAGKYWTAAVTATGDVYMW 462
+ VV +S G T AVT +V+ W
Sbjct: 325 FPDDQKVVQVSCGWRHTLAVTERNNVFAW 353
Score = 133 bits (334), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 99/312 (31%), Positives = 152/312 (48%), Gaps = 28/312 (8%)
Query: 127 EDCKSRTPVDLLSGPVLQVVGSG------YNSVATEVFSWGSGANYQLGTGNAHLQKLPC 180
ED S T + L G + V G Y+ EV+SWG G +LG GN+ P
Sbjct: 54 EDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPL 113
Query: 181 KVDSLHGFVIKLISAAKFHSVAVTSLGEVYTWGYGRGGRLGHPDFDIHSGQAAVITPRRV 240
+ +LHG IK I+ H +AVT GEV +WG + G+LG D + + P+++
Sbjct: 114 PIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTE------DSLVPQKI 167
Query: 241 TSGLGSRRVKTIAAAKHHTVLATEGGEVFTWGSNREGQLGYTSVDTQPTPRRVSSL-KLK 299
+ G R+K +AA HT TE G+++ WG R G LG + P RV+S K
Sbjct: 168 QAFEGI-RIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEK 226
Query: 300 IIAVAAANKHTAVVSESGEVFTWGCNREGQLGYGTSNSASNYTPRVVESLKGKDLVGVAA 359
+ VA +HT VS SG ++T+G ++ GQLG+G + + P +E+L + ++
Sbjct: 227 MSMVACGWRHTISVSYSGALYTYGWSKYGQLGHG--DLEDHLIPHKLEALSNSFISQISG 284
Query: 360 AKYHTIVLGADGE----------RVIVARNLKKSGSTPLKFHRKIKLHVVSIAAGMVHST 409
HT+ L +DG+ +V V NL + ++F K VV ++ G H+
Sbjct: 285 GWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQK--VVQVSCGWRHTL 342
Query: 410 ALTEDGALFYWA 421
A+TE +F W
Sbjct: 343 AVTERNNVFAWG 354
Score = 101 bits (251), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 90/337 (26%), Positives = 150/337 (44%), Gaps = 40/337 (11%)
Query: 190 IKLISAAKFHSVAVTSLGEVYTWGYGRGGRLGHPDFDIHSGQAAVITPRRVTSGLGSRRV 249
+ +ISA HSVA+ S V +WG G G+LGH D + +P ++++ G + V
Sbjct: 18 VLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRP------SPTQLSALDGHQIV 71
Query: 250 KTIAAAKHHTVLATEGGEVFTWGSNREGQLGYTSVDTQPTPRRVSSLK-LKIIAVAAANK 308
A H + G EV++WG G+LG+ + TP + +L ++I +A +
Sbjct: 72 SVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDS 131
Query: 309 HTAVVSESGEVFTWGCNREGQLGYGTSNSASNYTPRVVESLKGKDLVGVAAAKYHTIVLG 368
H V+ GEV +WG N+ GQLG G ++ + P+ +++ +G + VAA HT +
Sbjct: 132 HCLAVTMEGEVQSWGRNQNGQLGLG--DTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVT 189
Query: 369 ADGERVIVARNLKKSGSTPL--KFHRKIKLHVVS--------IAAGMVHSTALTEDGALF 418
DG+ + + G+ L + R + V S +A G H+ +++ GAL+
Sbjct: 190 EDGD--LYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALY 247
Query: 419 YWASS----------DPDLRCQQLYSMCGRNVVSISAGKYWTAAVTATGDVYMWD----- 463
+ S + L +L ++ + IS G T A+T+ G +Y W
Sbjct: 248 TYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFG 307
Query: 464 ----GKKSKDNPPLVTRLHGIKKATSVSVGETHLLIV 496
G P+ R +K VS G H L V
Sbjct: 308 QVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAV 344
Score = 95.5 bits (236), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 114/229 (49%), Gaps = 15/229 (6%)
Query: 127 EDCKSRTPVDLLSGPVLQVVGSGYNSVAT-----EVFSWGSGANYQLGTGNAHLQKLPCK 181
ED + G +++V +G A +++ WG G LG G+ + +P +
Sbjct: 159 EDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPER 218
Query: 182 VDSLHGFVIKLISAAKFHSVAVTSLGEVYTWGYGRGGRLGHPDFDIHSGQAAVITPRRVT 241
V S G + +++ H+++V+ G +YT+G+ + G+LGH D + H + P ++
Sbjct: 219 VTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDH------LIPHKLE 272
Query: 242 SGLGSRRVKTIAAAKHHTVLATEGGEVFTWGSNREGQLGYTSVDTQPTPRRVS-SLKLKI 300
+ L + + I+ HT+ T G+++ WG N+ GQ+G + Q +P +V K+
Sbjct: 273 A-LSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKV 331
Query: 301 IAVAAANKHTAVVSESGEVFTWGCNREGQLGYGTSNSASNYTPRVVESL 349
+ V+ +HT V+E VF WG GQLG G S P+++E+L
Sbjct: 332 VQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIG--ESVDRNFPKIIEAL 378
Score = 94.0 bits (232), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 96/185 (51%), Gaps = 12/185 (6%)
Query: 247 RRVKTIAAAKHHTVLATEGGEVFTWGSNREGQLGYTSVDTQPTPRRVSSLK-LKIIAVAA 305
R+V I+A H+V G V +WG +GQLG+ + +P+P ++S+L +I++V
Sbjct: 16 RKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTC 75
Query: 306 ANKHTAVVSESG-EVFTWGCNREGQLGYGTSNSASNYTPRVVESLKGKDLVGVAAAKYHT 364
HT S+SG EV++WG G+LG+G NS+ +TP +++L G + +A H
Sbjct: 76 GADHTVAYSQSGMEVYSWGWGDFGRLGHG--NSSDLFTPLPIKALHGIRIKQIACGDSHC 133
Query: 365 IVLGADGERVIVARNLKKS---GST-----PLKFHRKIKLHVVSIAAGMVHSTALTEDGA 416
+ + +GE RN G T P K + + +AAG H+ A+TEDG
Sbjct: 134 LAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGD 193
Query: 417 LFYWA 421
L+ W
Sbjct: 194 LYGWG 198
Score = 57.8 bits (138), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 69/147 (46%), Gaps = 7/147 (4%)
Query: 152 SVATEVFSWGSGANYQLGTGNAHLQKLPCKVDSLHGFVIKLISAAKFHSVAVTSLGEVYT 211
S + ++++G QLG G+ +P K+++L I IS H++A+TS G++Y
Sbjct: 241 SYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYG 300
Query: 212 WGYGRGGRLGHPDFDIHSGQAAVITPRRVTSGLGSRRVKTIAAAKHHTVLATEGGEVFTW 271
WG+ + G++G + V P ++V ++ HT+ TE VF W
Sbjct: 301 WGWNKFGQVGVGNNLDQCSPVQVRFPD-------DQKVVQVSCGWRHTLAVTERNNVFAW 353
Query: 272 GSNREGQLGYTSVDTQPTPRRVSSLKL 298
G GQLG + P+ + +L +
Sbjct: 354 GRGTNGQLGIGESVDRNFPKIIEALSV 380
>pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|B Chain B, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|C Chain C, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|D Chain D, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
Length = 370
Score = 133 bits (334), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 103/329 (31%), Positives = 154/329 (46%), Gaps = 35/329 (10%)
Query: 157 VFSWGSGANYQLGTGNAHLQKLPCKVDSLHGFVIKLISAAKFHSVAVTSLG-EVYTWGYG 215
V SWG G + QLG G+A + P ++ +L G I ++ H+VA + G EVY+WG+G
Sbjct: 25 VCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWG 84
Query: 216 RGGRLGHPDFDIHSGQAAVITPRRVTSGLGSRRVKTIAAAKHHTVLATEGGEVFTWGSNR 275
GRLGH + + + TP + + L R+K IA H + T GEV +WG N+
Sbjct: 85 DFGRLGHGN------SSDLFTPLPIKA-LHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQ 137
Query: 276 EGQLGYTSVDTQPTPRRVSSLK-LKIIAVAAANKHTAVVSESGEVFTWGCNREGQLGYGT 334
GQLG + P+++ + + ++I VAA +HTA V+E G+++ WG R G LG G
Sbjct: 138 NGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLG- 196
Query: 335 SNSASNYTPRVVESLKGKDLVGVAAAKYHTIVLGADGERVIVARNLKKSGS--------- 385
+ P V S G+ + VA HTI + G + K G
Sbjct: 197 -DRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSG--ALYTYGWSKYGQLGHGDLEDH 253
Query: 386 -TPLKFHRKIKLHVVSIAAGMVHSTALTEDGALFYWA---------SSDPDLRCQ--QLY 433
P K + I+ G H+ ALT DG L+ W ++ D +C Q+
Sbjct: 254 LIPHKLEALSNSFISQISGGFRHTMALTSDGKLYGWGWNKFGQVGVGNNLD-QCSPVQVR 312
Query: 434 SMCGRNVVSISAGKYWTAAVTATGDVYMW 462
+ VV +S G T AVT +V+ W
Sbjct: 313 FPDDQKVVQVSCGWRHTLAVTERNNVFAW 341
Score = 131 bits (330), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 99/312 (31%), Positives = 152/312 (48%), Gaps = 28/312 (8%)
Query: 127 EDCKSRTPVDLLSGPVLQVVGSG------YNSVATEVFSWGSGANYQLGTGNAHLQKLPC 180
ED S T + L G + V G Y+ EV+SWG G +LG GN+ P
Sbjct: 42 EDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPL 101
Query: 181 KVDSLHGFVIKLISAAKFHSVAVTSLGEVYTWGYGRGGRLGHPDFDIHSGQAAVITPRRV 240
+ +LHG IK I+ H +AVT GEV +WG + G+LG D + + P+++
Sbjct: 102 PIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTE------DSLVPQKI 155
Query: 241 TSGLGSRRVKTIAAAKHHTVLATEGGEVFTWGSNREGQLGYTSVDTQPTPRRVSSL-KLK 299
+ G R+K +AA HT TE G+++ WG R G LG + P RV+S K
Sbjct: 156 QAFEGI-RIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEK 214
Query: 300 IIAVAAANKHTAVVSESGEVFTWGCNREGQLGYGTSNSASNYTPRVVESLKGKDLVGVAA 359
+ VA +HT VS SG ++T+G ++ GQLG+G + + P +E+L + ++
Sbjct: 215 MSMVACGWRHTISVSYSGALYTYGWSKYGQLGHG--DLEDHLIPHKLEALSNSFISQISG 272
Query: 360 AKYHTIVLGADGE----------RVIVARNLKKSGSTPLKFHRKIKLHVVSIAAGMVHST 409
HT+ L +DG+ +V V NL + ++F K VV ++ G H+
Sbjct: 273 GFRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQK--VVQVSCGWRHTL 330
Query: 410 ALTEDGALFYWA 421
A+TE +F W
Sbjct: 331 AVTERNNVFAWG 342
Score = 100 bits (248), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 90/337 (26%), Positives = 150/337 (44%), Gaps = 40/337 (11%)
Query: 190 IKLISAAKFHSVAVTSLGEVYTWGYGRGGRLGHPDFDIHSGQAAVITPRRVTSGLGSRRV 249
+ +ISA HSVA+ S V +WG G G+LGH D + +P ++++ G + V
Sbjct: 6 VLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRP------SPTQLSALDGHQIV 59
Query: 250 KTIAAAKHHTVLATEGGEVFTWGSNREGQLGYTSVDTQPTPRRVSSLK-LKIIAVAAANK 308
A H + G EV++WG G+LG+ + TP + +L ++I +A +
Sbjct: 60 SVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDS 119
Query: 309 HTAVVSESGEVFTWGCNREGQLGYGTSNSASNYTPRVVESLKGKDLVGVAAAKYHTIVLG 368
H V+ GEV +WG N+ GQLG G ++ + P+ +++ +G + VAA HT +
Sbjct: 120 HCLAVTMEGEVQSWGRNQNGQLGLG--DTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVT 177
Query: 369 ADGERVIVARNLKKSGSTPL--KFHRKIKLHVVS--------IAAGMVHSTALTEDGALF 418
DG+ + + G+ L + R + V S +A G H+ +++ GAL+
Sbjct: 178 EDGD--LYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALY 235
Query: 419 YWASS----------DPDLRCQQLYSMCGRNVVSISAGKYWTAAVTATGDVYMWD----- 463
+ S + L +L ++ + IS G T A+T+ G +Y W
Sbjct: 236 TYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGFRHTMALTSDGKLYGWGWNKFG 295
Query: 464 ----GKKSKDNPPLVTRLHGIKKATSVSVGETHLLIV 496
G P+ R +K VS G H L V
Sbjct: 296 QVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAV 332
Score = 94.7 bits (234), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 114/229 (49%), Gaps = 15/229 (6%)
Query: 127 EDCKSRTPVDLLSGPVLQVVGSGYNSVAT-----EVFSWGSGANYQLGTGNAHLQKLPCK 181
ED + G +++V +G A +++ WG G LG G+ + +P +
Sbjct: 147 EDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPER 206
Query: 182 VDSLHGFVIKLISAAKFHSVAVTSLGEVYTWGYGRGGRLGHPDFDIHSGQAAVITPRRVT 241
V S G + +++ H+++V+ G +YT+G+ + G+LGH D + H + P ++
Sbjct: 207 VTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDH------LIPHKLE 260
Query: 242 SGLGSRRVKTIAAAKHHTVLATEGGEVFTWGSNREGQLGYTSVDTQPTPRRVS-SLKLKI 300
+ L + + I+ HT+ T G+++ WG N+ GQ+G + Q +P +V K+
Sbjct: 261 A-LSNSFISQISGGFRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKV 319
Query: 301 IAVAAANKHTAVVSESGEVFTWGCNREGQLGYGTSNSASNYTPRVVESL 349
+ V+ +HT V+E VF WG GQLG G S P+++E+L
Sbjct: 320 VQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIG--ESVDRNFPKIIEAL 366
Score = 93.2 bits (230), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 96/185 (51%), Gaps = 12/185 (6%)
Query: 247 RRVKTIAAAKHHTVLATEGGEVFTWGSNREGQLGYTSVDTQPTPRRVSSLK-LKIIAVAA 305
R+V I+A H+V G V +WG +GQLG+ + +P+P ++S+L +I++V
Sbjct: 4 RKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTC 63
Query: 306 ANKHTAVVSESG-EVFTWGCNREGQLGYGTSNSASNYTPRVVESLKGKDLVGVAAAKYHT 364
HT S+SG EV++WG G+LG+G NS+ +TP +++L G + +A H
Sbjct: 64 GADHTVAYSQSGMEVYSWGWGDFGRLGHG--NSSDLFTPLPIKALHGIRIKQIACGDSHC 121
Query: 365 IVLGADGERVIVARNLKKS---GST-----PLKFHRKIKLHVVSIAAGMVHSTALTEDGA 416
+ + +GE RN G T P K + + +AAG H+ A+TEDG
Sbjct: 122 LAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGD 181
Query: 417 LFYWA 421
L+ W
Sbjct: 182 LYGWG 186
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 69/147 (46%), Gaps = 7/147 (4%)
Query: 152 SVATEVFSWGSGANYQLGTGNAHLQKLPCKVDSLHGFVIKLISAAKFHSVAVTSLGEVYT 211
S + ++++G QLG G+ +P K+++L I IS H++A+TS G++Y
Sbjct: 229 SYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGFRHTMALTSDGKLYG 288
Query: 212 WGYGRGGRLGHPDFDIHSGQAAVITPRRVTSGLGSRRVKTIAAAKHHTVLATEGGEVFTW 271
WG+ + G++G + V P ++V ++ HT+ TE VF W
Sbjct: 289 WGWNKFGQVGVGNNLDQCSPVQVRFPD-------DQKVVQVSCGWRHTLAVTERNNVFAW 341
Query: 272 GSNREGQLGYTSVDTQPTPRRVSSLKL 298
G GQLG + P+ + +L +
Sbjct: 342 GRGTNGQLGIGESVDRNFPKIIEALSV 368
>pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8
pdb|4DNW|B Chain B, Crystal Structure Of Uvb-Resistance Protein Uvr8
Length = 374
Score = 132 bits (333), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 103/329 (31%), Positives = 154/329 (46%), Gaps = 35/329 (10%)
Query: 157 VFSWGSGANYQLGTGNAHLQKLPCKVDSLHGFVIKLISAAKFHSVAVTSLG-EVYTWGYG 215
V SWG G + QLG G+A + P ++ +L G I ++ H+VA + G EVY+WG+G
Sbjct: 25 VCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWG 84
Query: 216 RGGRLGHPDFDIHSGQAAVITPRRVTSGLGSRRVKTIAAAKHHTVLATEGGEVFTWGSNR 275
GRLGH + + + TP + + L R+K IA H + T GEV +WG N+
Sbjct: 85 DFGRLGHGN------SSDLFTPLPIKA-LHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQ 137
Query: 276 EGQLGYTSVDTQPTPRRVSSLK-LKIIAVAAANKHTAVVSESGEVFTWGCNREGQLGYGT 334
GQLG + P+++ + + ++I VAA +HTA V+E G+++ WG R G LG G
Sbjct: 138 NGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLG- 196
Query: 335 SNSASNYTPRVVESLKGKDLVGVAAAKYHTIVLGADGERVIVARNLKKSGS--------- 385
+ P V S G+ + VA HTI + G + K G
Sbjct: 197 -DRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSG--ALYTYGWSKYGQLGHGDLEDH 253
Query: 386 -TPLKFHRKIKLHVVSIAAGMVHSTALTEDGALFYWA---------SSDPDLRCQ--QLY 433
P K + I+ G H+ ALT DG L+ W ++ D +C Q+
Sbjct: 254 LIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLD-QCSPVQVR 312
Query: 434 SMCGRNVVSISAGKYWTAAVTATGDVYMW 462
+ VV +S G T AVT +V+ W
Sbjct: 313 FPDDQKVVQVSCGWRHTLAVTERNNVFAW 341
Score = 132 bits (331), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 99/312 (31%), Positives = 152/312 (48%), Gaps = 28/312 (8%)
Query: 127 EDCKSRTPVDLLSGPVLQVVGSG------YNSVATEVFSWGSGANYQLGTGNAHLQKLPC 180
ED S T + L G + V G Y+ EV+SWG G +LG GN+ P
Sbjct: 42 EDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPL 101
Query: 181 KVDSLHGFVIKLISAAKFHSVAVTSLGEVYTWGYGRGGRLGHPDFDIHSGQAAVITPRRV 240
+ +LHG IK I+ H +AVT GEV +WG + G+LG D + + P+++
Sbjct: 102 PIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTE------DSLVPQKI 155
Query: 241 TSGLGSRRVKTIAAAKHHTVLATEGGEVFTWGSNREGQLGYTSVDTQPTPRRVSSL-KLK 299
+ G R+K +AA HT TE G+++ WG R G LG + P RV+S K
Sbjct: 156 QAFEGI-RIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEK 214
Query: 300 IIAVAAANKHTAVVSESGEVFTWGCNREGQLGYGTSNSASNYTPRVVESLKGKDLVGVAA 359
+ VA +HT VS SG ++T+G ++ GQLG+G + + P +E+L + ++
Sbjct: 215 MSMVACGWRHTISVSYSGALYTYGWSKYGQLGHG--DLEDHLIPHKLEALSNSFISQISG 272
Query: 360 AKYHTIVLGADGE----------RVIVARNLKKSGSTPLKFHRKIKLHVVSIAAGMVHST 409
HT+ L +DG+ +V V NL + ++F K VV ++ G H+
Sbjct: 273 GWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQK--VVQVSCGWRHTL 330
Query: 410 ALTEDGALFYWA 421
A+TE +F W
Sbjct: 331 AVTERNNVFAWG 342
Score = 100 bits (249), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 90/337 (26%), Positives = 150/337 (44%), Gaps = 40/337 (11%)
Query: 190 IKLISAAKFHSVAVTSLGEVYTWGYGRGGRLGHPDFDIHSGQAAVITPRRVTSGLGSRRV 249
+ +ISA HSVA+ S V +WG G G+LGH D + +P ++++ G + V
Sbjct: 6 VLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRP------SPTQLSALDGHQIV 59
Query: 250 KTIAAAKHHTVLATEGGEVFTWGSNREGQLGYTSVDTQPTPRRVSSLK-LKIIAVAAANK 308
A H + G EV++WG G+LG+ + TP + +L ++I +A +
Sbjct: 60 SVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDS 119
Query: 309 HTAVVSESGEVFTWGCNREGQLGYGTSNSASNYTPRVVESLKGKDLVGVAAAKYHTIVLG 368
H V+ GEV +WG N+ GQLG G ++ + P+ +++ +G + VAA HT +
Sbjct: 120 HCLAVTMEGEVQSWGRNQNGQLGLG--DTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVT 177
Query: 369 ADGERVIVARNLKKSGSTPL--KFHRKIKLHVVS--------IAAGMVHSTALTEDGALF 418
DG+ + + G+ L + R + V S +A G H+ +++ GAL+
Sbjct: 178 EDGD--LYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALY 235
Query: 419 YWASS----------DPDLRCQQLYSMCGRNVVSISAGKYWTAAVTATGDVYMWD----- 463
+ S + L +L ++ + IS G T A+T+ G +Y W
Sbjct: 236 TYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFG 295
Query: 464 ----GKKSKDNPPLVTRLHGIKKATSVSVGETHLLIV 496
G P+ R +K VS G H L V
Sbjct: 296 QVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAV 332
Score = 94.7 bits (234), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 114/229 (49%), Gaps = 15/229 (6%)
Query: 127 EDCKSRTPVDLLSGPVLQVVGSGYNSVAT-----EVFSWGSGANYQLGTGNAHLQKLPCK 181
ED + G +++V +G A +++ WG G LG G+ + +P +
Sbjct: 147 EDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPER 206
Query: 182 VDSLHGFVIKLISAAKFHSVAVTSLGEVYTWGYGRGGRLGHPDFDIHSGQAAVITPRRVT 241
V S G + +++ H+++V+ G +YT+G+ + G+LGH D + H + P ++
Sbjct: 207 VTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDH------LIPHKLE 260
Query: 242 SGLGSRRVKTIAAAKHHTVLATEGGEVFTWGSNREGQLGYTSVDTQPTPRRVS-SLKLKI 300
+ L + + I+ HT+ T G+++ WG N+ GQ+G + Q +P +V K+
Sbjct: 261 A-LSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKV 319
Query: 301 IAVAAANKHTAVVSESGEVFTWGCNREGQLGYGTSNSASNYTPRVVESL 349
+ V+ +HT V+E VF WG GQLG G S P+++E+L
Sbjct: 320 VQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIG--ESVDRNFPKIIEAL 366
Score = 93.2 bits (230), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 96/185 (51%), Gaps = 12/185 (6%)
Query: 247 RRVKTIAAAKHHTVLATEGGEVFTWGSNREGQLGYTSVDTQPTPRRVSSLK-LKIIAVAA 305
R+V I+A H+V G V +WG +GQLG+ + +P+P ++S+L +I++V
Sbjct: 4 RKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTC 63
Query: 306 ANKHTAVVSESG-EVFTWGCNREGQLGYGTSNSASNYTPRVVESLKGKDLVGVAAAKYHT 364
HT S+SG EV++WG G+LG+G NS+ +TP +++L G + +A H
Sbjct: 64 GADHTVAYSQSGMEVYSWGWGDFGRLGHG--NSSDLFTPLPIKALHGIRIKQIACGDSHC 121
Query: 365 IVLGADGERVIVARNLKKS---GST-----PLKFHRKIKLHVVSIAAGMVHSTALTEDGA 416
+ + +GE RN G T P K + + +AAG H+ A+TEDG
Sbjct: 122 LAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGD 181
Query: 417 LFYWA 421
L+ W
Sbjct: 182 LYGWG 186
Score = 57.0 bits (136), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 69/147 (46%), Gaps = 7/147 (4%)
Query: 152 SVATEVFSWGSGANYQLGTGNAHLQKLPCKVDSLHGFVIKLISAAKFHSVAVTSLGEVYT 211
S + ++++G QLG G+ +P K+++L I IS H++A+TS G++Y
Sbjct: 229 SYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYG 288
Query: 212 WGYGRGGRLGHPDFDIHSGQAAVITPRRVTSGLGSRRVKTIAAAKHHTVLATEGGEVFTW 271
WG+ + G++G + V P ++V ++ HT+ TE VF W
Sbjct: 289 WGWNKFGQVGVGNNLDQCSPVQVRFPD-------DQKVVQVSCGWRHTLAVTERNNVFAW 341
Query: 272 GSNREGQLGYTSVDTQPTPRRVSSLKL 298
G GQLG + P+ + +L +
Sbjct: 342 GRGTNGQLGIGESVDRNFPKIIEALSV 368
>pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance
Protein Uvr8
Length = 372
Score = 132 bits (331), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 103/329 (31%), Positives = 153/329 (46%), Gaps = 35/329 (10%)
Query: 157 VFSWGSGANYQLGTGNAHLQKLPCKVDSLHGFVIKLISAAKFHSVAVTSLG-EVYTWGYG 215
V SWG G + QLG G+A + P ++ +L G I ++ H+VA + G EVY+WG+G
Sbjct: 27 VCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGXEVYSWGWG 86
Query: 216 RGGRLGHPDFDIHSGQAAVITPRRVTSGLGSRRVKTIAAAKHHTVLATEGGEVFTWGSNR 275
GRLGH + + + TP + + L R+K IA H + T GEV +WG N+
Sbjct: 87 DFGRLGHGN------SSDLFTPLPIKA-LHGIRIKQIACGDSHCLAVTXEGEVQSWGRNQ 139
Query: 276 EGQLGYTSVDTQPTPRRVSSLK-LKIIAVAAANKHTAVVSESGEVFTWGCNREGQLGYGT 334
GQLG + P+++ + + ++I VAA +HTA V+E G+++ WG R G LG G
Sbjct: 140 NGQLGLGDTEDSLVPQKIQAFEGIRIKXVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLG- 198
Query: 335 SNSASNYTPRVVESLKGKDLVGVAAAKYHTIVLGADGERVIVARNLKKSGS--------- 385
+ P V S G+ VA HTI + G + K G
Sbjct: 199 -DRTDRLVPERVTSTGGEKXSXVACGWRHTISVSYSG--ALYTYGWSKYGQLGHGDLEDH 255
Query: 386 -TPLKFHRKIKLHVVSIAAGMVHSTALTEDGALFYWA---------SSDPDLRCQ--QLY 433
P K + I+ G H+ ALT DG L+ W ++ D +C Q+
Sbjct: 256 LIPHKLEALSNSFISQISGGARHTXALTSDGKLYGWGWNKFGQVGVGNNLD-QCSPVQVR 314
Query: 434 SMCGRNVVSISAGKYWTAAVTATGDVYMW 462
+ VV +S G T AVT +V+ W
Sbjct: 315 FPDDQKVVQVSCGWRHTLAVTERNNVFAW 343
Score = 129 bits (325), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 99/312 (31%), Positives = 150/312 (48%), Gaps = 28/312 (8%)
Query: 127 EDCKSRTPVDLLSGPVLQVVGSG------YNSVATEVFSWGSGANYQLGTGNAHLQKLPC 180
ED S T + L G + V G Y+ EV+SWG G +LG GN+ P
Sbjct: 44 EDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGXEVYSWGWGDFGRLGHGNSSDLFTPL 103
Query: 181 KVDSLHGFVIKLISAAKFHSVAVTSLGEVYTWGYGRGGRLGHPDFDIHSGQAAVITPRRV 240
+ +LHG IK I+ H +AVT GEV +WG + G+LG D + + P+++
Sbjct: 104 PIKALHGIRIKQIACGDSHCLAVTXEGEVQSWGRNQNGQLGLGDTE------DSLVPQKI 157
Query: 241 TSGLGSRRVKTIAAAKHHTVLATEGGEVFTWGSNREGQLGYTSVDTQPTPRRVSSL-KLK 299
+ G R+K +AA HT TE G+++ WG R G LG + P RV+S K
Sbjct: 158 QAFEGI-RIKXVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEK 216
Query: 300 IIAVAAANKHTAVVSESGEVFTWGCNREGQLGYGTSNSASNYTPRVVESLKGKDLVGVAA 359
VA +HT VS SG ++T+G ++ GQLG+G + + P +E+L + ++
Sbjct: 217 XSXVACGWRHTISVSYSGALYTYGWSKYGQLGHG--DLEDHLIPHKLEALSNSFISQISG 274
Query: 360 AKYHTIVLGADGE----------RVIVARNLKKSGSTPLKFHRKIKLHVVSIAAGMVHST 409
HT L +DG+ +V V NL + ++F K VV ++ G H+
Sbjct: 275 GARHTXALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQK--VVQVSCGWRHTL 332
Query: 410 ALTEDGALFYWA 421
A+TE +F W
Sbjct: 333 AVTERNNVFAWG 344
Score = 102 bits (253), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 90/337 (26%), Positives = 150/337 (44%), Gaps = 40/337 (11%)
Query: 190 IKLISAAKFHSVAVTSLGEVYTWGYGRGGRLGHPDFDIHSGQAAVITPRRVTSGLGSRRV 249
+ +ISA HSVA+ S V +WG G G+LGH D + +P ++++ G + V
Sbjct: 8 VLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRP------SPTQLSALDGHQIV 61
Query: 250 KTIAAAKHHTVLATEGGEVFTWGSNREGQLGYTSVDTQPTPRRVSSLK-LKIIAVAAANK 308
A H + G EV++WG G+LG+ + TP + +L ++I +A +
Sbjct: 62 SVTCGADHTVAYSQSGXEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDS 121
Query: 309 HTAVVSESGEVFTWGCNREGQLGYGTSNSASNYTPRVVESLKGKDLVGVAAAKYHTIVLG 368
H V+ GEV +WG N+ GQLG G ++ + P+ +++ +G + VAA HT +
Sbjct: 122 HCLAVTXEGEVQSWGRNQNGQLGLG--DTEDSLVPQKIQAFEGIRIKXVAAGAEHTAAVT 179
Query: 369 ADGERVIVARNLKKSGSTPL--KFHRKIKLHVVS--------IAAGMVHSTALTEDGALF 418
DG+ + + G+ L + R + V S +A G H+ +++ GAL+
Sbjct: 180 EDGD--LYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKXSXVACGWRHTISVSYSGALY 237
Query: 419 YWASS----------DPDLRCQQLYSMCGRNVVSISAGKYWTAAVTATGDVYMWD----- 463
+ S + L +L ++ + IS G T A+T+ G +Y W
Sbjct: 238 TYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGARHTXALTSDGKLYGWGWNKFG 297
Query: 464 ----GKKSKDNPPLVTRLHGIKKATSVSVGETHLLIV 496
G P+ R +K VS G H L V
Sbjct: 298 QVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAV 334
Score = 93.6 bits (231), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 96/185 (51%), Gaps = 12/185 (6%)
Query: 247 RRVKTIAAAKHHTVLATEGGEVFTWGSNREGQLGYTSVDTQPTPRRVSSLK-LKIIAVAA 305
R+V I+A H+V G V +WG +GQLG+ + +P+P ++S+L +I++V
Sbjct: 6 RKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTC 65
Query: 306 ANKHTAVVSESG-EVFTWGCNREGQLGYGTSNSASNYTPRVVESLKGKDLVGVAAAKYHT 364
HT S+SG EV++WG G+LG+G NS+ +TP +++L G + +A H
Sbjct: 66 GADHTVAYSQSGXEVYSWGWGDFGRLGHG--NSSDLFTPLPIKALHGIRIKQIACGDSHC 123
Query: 365 IVLGADGERVIVARNLKKS---GST-----PLKFHRKIKLHVVSIAAGMVHSTALTEDGA 416
+ + +GE RN G T P K + + +AAG H+ A+TEDG
Sbjct: 124 LAVTXEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKXVAAGAEHTAAVTEDGD 183
Query: 417 LFYWA 421
L+ W
Sbjct: 184 LYGWG 188
Score = 90.9 bits (224), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 100/195 (51%), Gaps = 10/195 (5%)
Query: 156 EVFSWGSGANYQLGTGNAHLQKLPCKVDSLHGFVIKLISAAKFHSVAVTSLGEVYTWGYG 215
+++ WG G LG G+ + +P +V S G ++ H+++V+ G +YT+G+
Sbjct: 183 DLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKXSXVACGWRHTISVSYSGALYTYGWS 242
Query: 216 RGGRLGHPDFDIHSGQAAVITPRRVTSGLGSRRVKTIAAAKHHTVLATEGGEVFTWGSNR 275
+ G+LGH D + H + P ++ + L + + I+ HT T G+++ WG N+
Sbjct: 243 KYGQLGHGDLEDH------LIPHKLEA-LSNSFISQISGGARHTXALTSDGKLYGWGWNK 295
Query: 276 EGQLGYTSVDTQPTPRRVS-SLKLKIIAVAAANKHTAVVSESGEVFTWGCNREGQLGYGT 334
GQ+G + Q +P +V K++ V+ +HT V+E VF WG GQLG G
Sbjct: 296 FGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIG- 354
Query: 335 SNSASNYTPRVVESL 349
S P+++E+L
Sbjct: 355 -ESVDRNFPKIIEAL 368
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 68/147 (46%), Gaps = 7/147 (4%)
Query: 152 SVATEVFSWGSGANYQLGTGNAHLQKLPCKVDSLHGFVIKLISAAKFHSVAVTSLGEVYT 211
S + ++++G QLG G+ +P K+++L I IS H+ A+TS G++Y
Sbjct: 231 SYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGARHTXALTSDGKLYG 290
Query: 212 WGYGRGGRLGHPDFDIHSGQAAVITPRRVTSGLGSRRVKTIAAAKHHTVLATEGGEVFTW 271
WG+ + G++G + V P ++V ++ HT+ TE VF W
Sbjct: 291 WGWNKFGQVGVGNNLDQCSPVQVRFPD-------DQKVVQVSCGWRHTLAVTERNNVFAW 343
Query: 272 GSNREGQLGYTSVDTQPTPRRVSSLKL 298
G GQLG + P+ + +L +
Sbjct: 344 GRGTNGQLGIGESVDRNFPKIIEALSV 370
>pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2
Length = 389
Score = 120 bits (302), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 88/261 (33%), Positives = 122/261 (46%), Gaps = 56/261 (21%)
Query: 156 EVFSWGSGANYQLGTGNAHLQKLPCKVDSLHGFVIKLISAAKFHSVAVTSLGEVYTWGYG 215
EV+SWG + +LG GN P ++SL G + ++A HS VT+ G++YTWG G
Sbjct: 127 EVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKG 186
Query: 216 RGGRLGHPD------------------FDIHSG----QAAVIT----------------- 236
R GRLGH D DI G Q +T
Sbjct: 187 RYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLG 246
Query: 237 ---------PRRVTS--GLGSRRVKTIAAAKHHTVLATEGGEVFTWGSNREGQLGYTSVD 285
P ++ S GLG V + +V T+ G V+TWG +LG+ S D
Sbjct: 247 RGGSDGCKVPMKIDSLTGLG---VVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDD 303
Query: 286 TQPTPRRVSSLK-LKIIAVAAANKHTAVVSESGEVFTWGCNREGQLGYGTSNSASNYTPR 344
PR+V L+ K+IA+A + H +E GEV+TWG N EGQLG GT+N+ PR
Sbjct: 304 HVRRPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQR--PR 361
Query: 345 VVESLKGKDLVGVAAAKYHTI 365
+V +L+GK + VA HT+
Sbjct: 362 LVAALQGKKVNRVACGSAHTL 382
Score = 117 bits (294), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 108/379 (28%), Positives = 173/379 (45%), Gaps = 45/379 (11%)
Query: 150 YNSVATEVFSWGSGANYQLGTGNAHLQKLPCKVDSLHGFV-IKLISAAKFHSVAVTSLGE 208
Y + ++ WG QLG K+P ++L ++LI + AVT+ G+
Sbjct: 15 YFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQT-LFAVTADGK 73
Query: 209 VYTWGYGRGGRLGHPDFDIHSGQAAVITPRRVTS--GLGSRRVKTIAAAKHHTVLATEGG 266
+Y GYG G +V TP + S + ++V + KH L++EG
Sbjct: 74 LYATGYGA------GGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEG- 126
Query: 267 EVFTWGSNREGQLGYTSVDTQPTPRRVSSLK-LKIIAVAAANKHTAVVSESGEVFTWGCN 325
EV++WG +G+LG+ + PR + SL+ ++++ VAA H+A V+ +G+++TWG
Sbjct: 127 EVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKG 186
Query: 326 REGQLGYGTSNSASNYTPRVVESLKGKDLVGVAAAK--YHTIVLG--------ADGERVI 375
R G+LG+ S+S P++VE+L+G +V +A T+ L DG+
Sbjct: 187 RYGRLGH--SDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGK 244
Query: 376 VARNLKKSGSTPLKFHRKIKLHVVSIAAGMVHSTALTEDGALFYWA----------SSDP 425
+ R P+K L VV + G S ALT+ GA++ W S D
Sbjct: 245 LGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDH 304
Query: 426 DLRCQQLYSMCGRNVVSISAGKYWTAAVTATGDVYMW---------DGKKSK-DNPPLVT 475
R +Q+ + G+ V++I+ G T G+VY W DG + P LV
Sbjct: 305 VRRPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQRPRLVA 364
Query: 476 RLHGIKKATSVSVGETHLL 494
L G KK V+ G H L
Sbjct: 365 ALQG-KKVNRVACGSAHTL 382
Score = 103 bits (258), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 70/162 (43%), Positives = 91/162 (56%), Gaps = 10/162 (6%)
Query: 157 VFSWGSGANYQLGTGNAHLQKLPCKVDSLHGF-VIKLISAAKFHSVAVTSLGEVYTWGYG 215
V+SWG G +LG G + K+P K+DSL G V+K+ ++F SVA+T G VYTWG G
Sbjct: 234 VWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQF-SVALTKSGAVYTWGKG 292
Query: 216 RGGRLGHPDFDIHSGQAAVITPRRVTSGLGSRRVKTIAAAKHHTVLATEGGEVFTWGSNR 275
RLGH D V PR+V GL ++V IA H V TE GEV+TWG N
Sbjct: 293 DYHRLGHGSDD------HVRRPRQV-QGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDND 345
Query: 276 EGQLGYTSVDTQPTPRRVSSLK-LKIIAVAAANKHTAVVSES 316
EGQLG + + PR V++L+ K+ VA + HT S S
Sbjct: 346 EGQLGDGTTNAIQRPRLVAALQGKKVNRVACGSAHTLAWSTS 387
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 75.9 bits (185), Expect = 1e-13, Method: Composition-based stats.
Identities = 46/107 (42%), Positives = 64/107 (59%), Gaps = 5/107 (4%)
Query: 31 LCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADP 90
L LA REG L VE +L K G ++N+++ G TPLH A + IV LL AGAD
Sbjct: 39 LHLAAREGHLEIVE----VLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 94
Query: 91 DARDGESGWSSLHRALHFGHLAVASVLLQSGASITLEDCKSRTPVDL 137
+A+D + G++ LH A GHL + VLL++GA + +D +TP DL
Sbjct: 95 NAKD-KDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDL 140
Score = 69.7 bits (169), Expect = 9e-12, Method: Composition-based stats.
Identities = 40/108 (37%), Positives = 62/108 (57%), Gaps = 1/108 (0%)
Query: 30 DLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGAD 89
DL + E + A + + +L NG ++N+++ G TPLH A + IV LL AGAD
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 60
Query: 90 PDARDGESGWSSLHRALHFGHLAVASVLLQSGASITLEDCKSRTPVDL 137
+A+D + G++ LH A GHL + VLL++GA + +D TP+ L
Sbjct: 61 VNAKD-KDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHL 107
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 75.9 bits (185), Expect = 1e-13, Method: Composition-based stats.
Identities = 46/107 (42%), Positives = 64/107 (59%), Gaps = 5/107 (4%)
Query: 31 LCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADP 90
L LA REG L VE +L K G ++N+++ G TPLH A + IV LL AGAD
Sbjct: 39 LHLAAREGHLEIVE----VLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 94
Query: 91 DARDGESGWSSLHRALHFGHLAVASVLLQSGASITLEDCKSRTPVDL 137
+A+D + G++ LH A GHL + VLL++GA + +D +TP DL
Sbjct: 95 NAKD-KDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDL 140
Score = 69.7 bits (169), Expect = 9e-12, Method: Composition-based stats.
Identities = 40/108 (37%), Positives = 62/108 (57%), Gaps = 1/108 (0%)
Query: 30 DLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGAD 89
DL + E + A + + +L NG ++N+++ G TPLH A + IV LL AGAD
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 60
Query: 90 PDARDGESGWSSLHRALHFGHLAVASVLLQSGASITLEDCKSRTPVDL 137
+A+D + G++ LH A GHL + VLL++GA + +D TP+ L
Sbjct: 61 VNAKD-KDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHL 107
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 73.6 bits (179), Expect = 5e-13, Method: Composition-based stats.
Identities = 43/138 (31%), Positives = 71/138 (51%), Gaps = 8/138 (5%)
Query: 30 DLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGAD 89
DL + E + A + + +L NG ++N+ + FG+TPLH + + I+ LL AD
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAAD 72
Query: 90 PDARDGESGWSSLHRALHFGHLAVASVLLQSGASITLEDCKSRTPVDLLSGPVLQVVGSG 149
+A D +SGW+ LH A + GHL + VLL+ GA + D + TP+ L + G
Sbjct: 73 VNASD-KSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAA-------EDG 124
Query: 150 YNSVATEVFSWGSGANYQ 167
+ + + +G+ N Q
Sbjct: 125 HLEIVEVLLKYGADVNAQ 142
Score = 63.5 bits (153), Expect = 7e-10, Method: Composition-based stats.
Identities = 40/107 (37%), Positives = 58/107 (54%), Gaps = 5/107 (4%)
Query: 31 LCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADP 90
L L V G L +E +L K ++N+ + G TPLH A +R + IV LL GAD
Sbjct: 51 LHLVVNNGHLEIIE----VLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADV 106
Query: 91 DARDGESGWSSLHRALHFGHLAVASVLLQSGASITLEDCKSRTPVDL 137
+A D + G++ LH A GHL + VLL+ GA + +D +T D+
Sbjct: 107 NAMDYQ-GYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKFGKTAFDI 152
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 73.2 bits (178), Expect = 8e-13, Method: Composition-based stats.
Identities = 45/138 (32%), Positives = 70/138 (50%), Gaps = 8/138 (5%)
Query: 30 DLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGAD 89
DL + E + A + + +L NG ++N+ ++ G TPLH A + + IV LL GAD
Sbjct: 13 DLGKKLLEAARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGAD 72
Query: 90 PDARDGESGWSSLHRALHFGHLAVASVLLQSGASITLEDCKSRTPVDLLSGPVLQVVGSG 149
+A D G + LH A HFGHL + VLL++GA + +D TP+ L G
Sbjct: 73 VNAYD-TLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHL-------AANRG 124
Query: 150 YNSVATEVFSWGSGANYQ 167
+ + + +G+ N Q
Sbjct: 125 HLEIVEVLLKYGADVNAQ 142
Score = 64.7 bits (156), Expect = 2e-10, Method: Composition-based stats.
Identities = 42/107 (39%), Positives = 60/107 (56%), Gaps = 5/107 (4%)
Query: 31 LCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADP 90
L LA G L VE +L KNG ++N+ + G TPLH A + IV LL GAD
Sbjct: 51 LHLAAYWGHLEIVE----VLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADV 106
Query: 91 DARDGESGWSSLHRALHFGHLAVASVLLQSGASITLEDCKSRTPVDL 137
+A+D ++G + LH A + GHL + VLL+ GA + +D +T D+
Sbjct: 107 NAKD-DNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKTAFDI 152
Score = 45.4 bits (106), Expect = 2e-04, Method: Composition-based stats.
Identities = 32/87 (36%), Positives = 51/87 (58%), Gaps = 5/87 (5%)
Query: 31 LCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADP 90
L LA G L VE +L KNG ++N+++ G+TPLH A R + IV LL GAD
Sbjct: 84 LHLAAHFGHLEIVE----VLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADV 139
Query: 91 DARDGESGWSSLHRALHFGHLAVASVL 117
+A+D + G ++ +++ G+ +A +L
Sbjct: 140 NAQD-KFGKTAFDISINNGNEDLAEIL 165
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 72.8 bits (177), Expect = 9e-13, Method: Composition-based stats.
Identities = 42/108 (38%), Positives = 59/108 (54%), Gaps = 1/108 (0%)
Query: 30 DLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGAD 89
DL + E + A + + +L NG ++N+ + G TPLH A W IV LL GAD
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGAD 72
Query: 90 PDARDGESGWSSLHRALHFGHLAVASVLLQSGASITLEDCKSRTPVDL 137
+ARD + GW+ LH A GHL + VLL+ GA + +D TP+ L
Sbjct: 73 VNARDTD-GWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHL 119
Score = 60.5 bits (145), Expect = 5e-09, Method: Composition-based stats.
Identities = 35/89 (39%), Positives = 51/89 (57%), Gaps = 1/89 (1%)
Query: 49 LLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRALHF 108
+L K+G ++N+R+ G TPLH A + IV LL GAD +A+D G + LH A
Sbjct: 65 VLLKHGADVNARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDA-YGLTPLHLAADR 123
Query: 109 GHLAVASVLLQSGASITLEDCKSRTPVDL 137
GHL + VLL+ GA + +D +T D+
Sbjct: 124 GHLEIVEVLLKHGADVNAQDKFGKTAFDI 152
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/64 (43%), Positives = 38/64 (59%), Gaps = 4/64 (6%)
Query: 31 LCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADP 90
L LA G L VE +L K G ++N+++ +GLTPLH A R + IV LL GAD
Sbjct: 84 LHLAADNGHLEIVE----VLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADV 139
Query: 91 DARD 94
+A+D
Sbjct: 140 NAQD 143
>pdb|3MVD|K Chain K, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
pdb|3MVD|L Chain L, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
Length = 423
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 87/361 (24%), Positives = 135/361 (37%), Gaps = 118/361 (32%)
Query: 152 SVATEVFSWGSGANYQLGTGNAHLQK--------LPCKVDSLHGFVIKLISAAKFHSVAV 203
+V V G+G QLG G L++ +P VD ISA H++ +
Sbjct: 40 TVLGNVLVCGNGDVGQLGLGEDILERKRLSPVAGIPDAVD---------ISAGGMHNLVL 90
Query: 204 TSLGEVYTWGYGRGGRLGH----------PDFDIHSGQAAVITPRRVTSGLGSRRVKTIA 253
T G++Y++G G LG PD G+A I+
Sbjct: 91 TKSGDIYSFGCNDEGALGRDTSEDGSESKPDLIDLPGKALCIS----------------- 133
Query: 254 AAKHHTVLATEGGEVFTWGSNRE--GQLGYTSVDTQPTPRRVSSLKLKIIAVAAANKHTA 311
A H+ E G VF WGS R+ G +G T + TP + + ++A+ H
Sbjct: 134 AGDSHSACLLEDGRVFAWGSFRDSHGNMGLTIDGNKRTPIDLMEGTV-CCSIASGADHLV 192
Query: 312 VVSESGEVFTWGCNREGQLGYGTSNS------------------------------ASNY 341
+++ +G+VFT GC +GQLG + S A+NY
Sbjct: 193 ILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWATNY 252
Query: 342 TPRVVES-------------------LKGK------------DLVGVAAAKYHTIVLGAD 370
+ ES KGK D+ +A ++HT++L D
Sbjct: 253 CTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDIRHIAGGQHHTVILTTD 312
Query: 371 GERVIVAR---------NLKKSGSTPLKFHRKIKLHVVSIAAGMVHSTALTEDGALFYWA 421
+ +V R ++K P +K+ +VS+ G V S A+T DG L+ W
Sbjct: 313 LKCSVVGRPEYGRLGLGDVKDVVEKP-TIVKKLTEKIVSVGCGEVCSYAVTIDGKLYSWG 371
Query: 422 S 422
S
Sbjct: 372 S 372
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 63/262 (24%), Positives = 104/262 (39%), Gaps = 34/262 (12%)
Query: 128 DCKSRTPVDLLSGPVLQVVGSGYN-----SVATEVFSWGSGANYQLG-------TGNAHL 175
D RTP+DL+ G V + SG + + A +VF+ G QLG +G
Sbjct: 166 DGNKRTPIDLMEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRR 225
Query: 176 QKLPCKVDSLHGFVIKLISAAKFHSVAVTSLGE---------VYTWGYGRGGRLGHPDFD 226
K D L + + A F ++ T+ ++ G +L H
Sbjct: 226 GKR----DLLRPTQLIITRAKPFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHET-- 279
Query: 227 IHSGQAAVITPRRVTSGLGSRRVKTIAAAKHHTVLATEGGEVFTWGSNREGQLGYTSV-D 285
G+ +TP + + ++ IA +HHTV+ T + G G+LG V D
Sbjct: 280 --KGKEFALTPIKTEL----KDIRHIAGGQHHTVILTTDLKCSVVGRPEYGRLGLGDVKD 333
Query: 286 TQPTPRRVSSLKLKIIAVAAANKHTAVVSESGEVFTWGCNREGQLGYGTSNSASNYTPRV 345
P V L KI++V + V+ G++++WG QLG G + V
Sbjct: 334 VVEKPTIVKKLTEKIVSVGCGEVCSYAVTIDGKLYSWGSGVNNQLGVGDGDDELEPIVVV 393
Query: 346 VESLKGKDLVGVAAAKYHTIVL 367
++ +GK ++ + H I L
Sbjct: 394 SKNTQGKHMLLASGGGQHAIFL 415
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 81/174 (46%), Gaps = 20/174 (11%)
Query: 256 KHHTVLATEGGEVFTWGSNREGQLGYTSVDTQPTPRRVSSLKL--KIIAVAAANKHTAVV 313
K TVL G V G+ GQLG + +R+S + + ++A H V+
Sbjct: 37 KRRTVL----GNVLVCGNGDVGQLGLG--EDILERKRLSPVAGIPDAVDISAGGMHNLVL 90
Query: 314 SESGEVFTWGCNREGQLGYGTSNSASNYTPRVVESLKGKDLVGVAAAKYHTIVLGADGER 373
++SG+++++GCN EG LG TS S P +++ L GK L ++A H+ L DG R
Sbjct: 91 TKSGDIYSFGCNDEGALGRDTSEDGSESKPDLID-LPGKALC-ISAGDSHSACLLEDG-R 147
Query: 374 VIVARNLKKS-GSTPLKFHRKIKLHV--------VSIAAGMVHSTALTEDGALF 418
V + + S G+ L + + SIA+G H LT G +F
Sbjct: 148 VFAWGSFRDSHGNMGLTIDGNKRTPIDLMEGTVCCSIASGADHLVILTTAGKVF 201
>pdb|1A12|A Chain A, Regulator Of Chromosome Condensation (Rcc1) Of Human
pdb|1A12|B Chain B, Regulator Of Chromosome Condensation (Rcc1) Of Human
pdb|1A12|C Chain C, Regulator Of Chromosome Condensation (Rcc1) Of Human
Length = 413
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/239 (29%), Positives = 102/239 (42%), Gaps = 39/239 (16%)
Query: 258 HTVLATEGGEVFTWGSNREGQLGYTSVDTQPTPRRVSSLKLKIIAVAAANKHTAVVSESG 317
H +TE G V T G GQLG + + S+ ++ A HT +S+SG
Sbjct: 19 HRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPEDVVQAEAGGMHTVCLSKSG 78
Query: 318 EVFTWGCNREGQLGYGTSNSASNYTPRVVESLKGKDLVGVAAAKYHTIVLGADGERVIVA 377
+V+++GCN EG LG TS S P VE L+ K +V V+A HT L DG RV +
Sbjct: 79 QVYSFGCNDEGALGRDTSVEGSEMVPGKVE-LQEK-VVQVSAGDSHTAALTDDG-RVFLW 135
Query: 378 RNLKKSGST-----PLK-----FHRKIKLHVVSIAAGMVHSTALTEDGALFYWASSD--- 424
+ + + P+K ++ + VV +A+G H LT DG L+ +
Sbjct: 136 GSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQ 195
Query: 425 ----PDL----------------RCQQLYSMCGRNVVSIS---AGKYWTAAVTATGDVY 460
P+L +C L S R V G Y+T A++ G VY
Sbjct: 196 LGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVY 254
Score = 66.6 bits (161), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 88/178 (49%), Gaps = 12/178 (6%)
Query: 157 VFSWGSGANYQLGTGNAHLQKLPCKVDSLHGFVIKLISAAKFHSVAVTSLGEVYTWGYGR 216
V + G G QLG G +++ + S+ V++ A H+V ++ G+VY++G
Sbjct: 29 VLTLGQGDVGQLGLGENVMERKKPALVSIPEDVVQ-AEAGGMHTVCLSKSGQVYSFGCND 87
Query: 217 GGRLGHPDFDIHSGQAAVITPRRVTSGLGSRRVKTIAAAKHHTVLATEGGEVFTWGSNRE 276
G LG S + + + P +V +V ++A HT T+ G VF WGS R+
Sbjct: 88 EGALGRDT----SVEGSEMVPGKVEL---QEKVVQVSAGDSHTAALTDDGRVFLWGSFRD 140
Query: 277 --GQLGYTS-VDTQPTPRRVSSLKLKIIAVAAANKHTAVVSESGEVFTWGCNREGQLG 331
G +G + P +V L + ++ VA+ N H +++ G+++T GC +GQLG
Sbjct: 141 NNGVIGLLEPMKKSMVPVQV-QLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLG 197
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 83/336 (24%), Positives = 141/336 (41%), Gaps = 58/336 (17%)
Query: 127 EDCKSRTPVDLLSGP--VLQVVGSGYNSVAT----EVFSWGSGANYQLG--TGNAHLQKL 178
E+ R L+S P V+Q G ++V +V+S+G LG T + +
Sbjct: 44 ENVMERKKPALVSIPEDVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMV 103
Query: 179 PCKVDSLHGFVIKLISAAKFHSVAVTSLGEVYTWGYGRGGRLGHPDFDIHSGQAAVITPR 238
P KV+ L V++ +SA H+ A+T G V+ WG F ++G ++ P
Sbjct: 104 PGKVE-LQEKVVQ-VSAGDSHTAALTDDGRVFLWG----------SFRDNNGVIGLLEPM 151
Query: 239 R-----VTSGLGSRRVKTIAAAKHHTVLATEGGEVFTWGSNREGQLG-----YTSVDTQP 288
+ V L VK +A+ H V+ T G+++T G +GQLG + + +
Sbjct: 152 KKSMVPVQVQLDVPVVK-VASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQ 210
Query: 289 TPRRVSSLKLKIIAVAAANKH------------TAVVSESGEVFTWGCNREGQLGYGTSN 336
R+ K ++ + H T +S G V+ +G + QLG T
Sbjct: 211 GLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLG--TPG 268
Query: 337 SASNYTPRVVESLKG--KDLVGVAAAKYHTIVLGADGERVIVAR---------NLKKSGS 385
+ S + P+ + S K K VG + ++HT+ + ++G+ + R + S
Sbjct: 269 TESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKS 328
Query: 386 TPLKFHRKIKLHVVSIAAGMVHSTALTEDGALFYWA 421
P R V S+A G A+T+DG +F W
Sbjct: 329 IPTLISRLPA--VSSVACGASVGYAVTKDGRVFAWG 362
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 80/181 (44%), Gaps = 9/181 (4%)
Query: 195 AAKFHSVAVTSLGEVYTWGYGRGGRLGHPDFDIHSGQAAVITPRRVTSGLGSRRVKT-IA 253
+ + A++ G VY +G +LG P G + P+ +TS S + +
Sbjct: 239 CGAYFTFAISHEGHVYGFGLSNYHQLGTP------GTESCFIPQNLTSFKNSTKSWVGFS 292
Query: 254 AAKHHTVLATEGGEVFTWGSNREGQLGY-TSVDTQPTPRRVSSLKLKIIAVAAANKHTAV 312
+HHTV G+ ++ G G+LG + + P +S L + +VA
Sbjct: 293 GGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLP-AVSSVACGASVGYA 351
Query: 313 VSESGEVFTWGCNREGQLGYGTSNSASNYTPRVVESLKGKDLVGVAAAKYHTIVLGADGE 372
V++ G VF WG QLG G A + + + L+ + ++ V++ HT++L D E
Sbjct: 352 VTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLLVKDKE 411
Query: 373 R 373
+
Sbjct: 412 Q 412
Score = 37.4 bits (85), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 69/167 (41%), Gaps = 13/167 (7%)
Query: 157 VFSWGSGANYQLGTGNAHLQKLPCKVDSLHGFVIKLI--SAAKFHSVAVTSLGEVYTWGY 214
V+ +G +QLGT +P + S + S + H+V + S G+ Y+ G
Sbjct: 253 VYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGR 312
Query: 215 GRGGRLGHPDFDIHSGQAAVITPRRVTSGLGSRRVKTIAAAKHHTVLATEGGEVFTWGSN 274
GRLG + G P ++ V ++A T+ G VF WG
Sbjct: 313 AEYGRLG-----LGEGAEEKSIPTLISR---LPAVSSVACGASVGYAVTKDGRVFAWGMG 364
Query: 275 REGQLGYTSVDTQPTPRRVSSLKLK---IIAVAAANKHTAVVSESGE 318
QLG + +P + +L+ +++V++ +HT ++ + E
Sbjct: 365 TNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLLVKDKE 411
Score = 37.0 bits (84), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 58/128 (45%), Gaps = 27/128 (21%)
Query: 398 VVSIAAGMVHSTALTEDGALFYWASSDP-----DLRCQQLYSMCGR-----NVVSISAGK 447
VV AG +H+ L++ G ++ + +D D + + G+ VV +SAG
Sbjct: 61 VVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGD 120
Query: 448 YWTAAVTATGDVYMWDGKKSKDNPPLVTRLHGIKKA------------TSVSVGETHLLI 495
TAA+T G V++W +DN ++ L +KK+ V+ G HL++
Sbjct: 121 SHTAALTDDGRVFLWG--SFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGNDHLVM 178
Query: 496 V---GSLY 500
+ G LY
Sbjct: 179 LTADGDLY 186
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 71.2 bits (173), Expect = 3e-12, Method: Composition-based stats.
Identities = 44/107 (41%), Positives = 63/107 (58%), Gaps = 5/107 (4%)
Query: 31 LCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADP 90
L LA REG L VE +L K G ++N+++ G TPLH A + IV LL AGAD
Sbjct: 51 LHLAAREGHLEIVE----VLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 106
Query: 91 DARDGESGWSSLHRALHFGHLAVASVLLQSGASITLEDCKSRTPVDL 137
+A+D + G++ LH A GHL + VLL++GA + +D +T D+
Sbjct: 107 NAKD-KDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDI 152
Score = 69.3 bits (168), Expect = 1e-11, Method: Composition-based stats.
Identities = 40/108 (37%), Positives = 62/108 (57%), Gaps = 1/108 (0%)
Query: 30 DLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGAD 89
DL + E + A + + +L NG ++N+++ G TPLH A + IV LL AGAD
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 72
Query: 90 PDARDGESGWSSLHRALHFGHLAVASVLLQSGASITLEDCKSRTPVDL 137
+A+D + G++ LH A GHL + VLL++GA + +D TP+ L
Sbjct: 73 VNAKD-KDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHL 119
>pdb|1I2M|B Chain B, Ran-Rcc1-So4 Complex
pdb|1I2M|D Chain D, Ran-Rcc1-So4 Complex
Length = 402
Score = 71.2 bits (173), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 70/239 (29%), Positives = 102/239 (42%), Gaps = 39/239 (16%)
Query: 258 HTVLATEGGEVFTWGSNREGQLGYTSVDTQPTPRRVSSLKLKIIAVAAANKHTAVVSESG 317
H +TE G V T G GQLG + + S+ ++ A HT +S+SG
Sbjct: 8 HRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPEDVVQAEAGGMHTVCLSKSG 67
Query: 318 EVFTWGCNREGQLGYGTSNSASNYTPRVVESLKGKDLVGVAAAKYHTIVLGADGERVIVA 377
+V+++GCN EG LG TS S P VE L+ K +V V+A HT L DG RV +
Sbjct: 68 QVYSFGCNDEGALGRDTSVEGSEMVPGKVE-LQEK-VVQVSAGDSHTAALTDDG-RVFLW 124
Query: 378 RNLKKSGST-----PLK-----FHRKIKLHVVSIAAGMVHSTALTEDGALFYWASSD--- 424
+ + + P+K ++ + VV +A+G H LT DG L+ +
Sbjct: 125 GSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQ 184
Query: 425 ----PDL----------------RCQQLYSMCGRNVVSIS---AGKYWTAAVTATGDVY 460
P+L +C L S R V G Y+T A++ G VY
Sbjct: 185 LGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVY 243
Score = 66.2 bits (160), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 88/178 (49%), Gaps = 12/178 (6%)
Query: 157 VFSWGSGANYQLGTGNAHLQKLPCKVDSLHGFVIKLISAAKFHSVAVTSLGEVYTWGYGR 216
V + G G QLG G +++ + S+ V++ A H+V ++ G+VY++G
Sbjct: 18 VLTLGQGDVGQLGLGENVMERKKPALVSIPEDVVQ-AEAGGMHTVCLSKSGQVYSFGCND 76
Query: 217 GGRLGHPDFDIHSGQAAVITPRRVTSGLGSRRVKTIAAAKHHTVLATEGGEVFTWGSNRE 276
G LG S + + + P +V +V ++A HT T+ G VF WGS R+
Sbjct: 77 EGALGRDT----SVEGSEMVPGKVEL---QEKVVQVSAGDSHTAALTDDGRVFLWGSFRD 129
Query: 277 --GQLGYTS-VDTQPTPRRVSSLKLKIIAVAAANKHTAVVSESGEVFTWGCNREGQLG 331
G +G + P +V L + ++ VA+ N H +++ G+++T GC +GQLG
Sbjct: 130 NNGVIGLLEPMKKSMVPVQV-QLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLG 186
Score = 59.7 bits (143), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 83/336 (24%), Positives = 141/336 (41%), Gaps = 58/336 (17%)
Query: 127 EDCKSRTPVDLLSGP--VLQVVGSGYNSVAT----EVFSWGSGANYQLG--TGNAHLQKL 178
E+ R L+S P V+Q G ++V +V+S+G LG T + +
Sbjct: 33 ENVMERKKPALVSIPEDVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMV 92
Query: 179 PCKVDSLHGFVIKLISAAKFHSVAVTSLGEVYTWGYGRGGRLGHPDFDIHSGQAAVITPR 238
P KV+ L V++ +SA H+ A+T G V+ WG F ++G ++ P
Sbjct: 93 PGKVE-LQEKVVQ-VSAGDSHTAALTDDGRVFLWG----------SFRDNNGVIGLLEPM 140
Query: 239 R-----VTSGLGSRRVKTIAAAKHHTVLATEGGEVFTWGSNREGQLG-----YTSVDTQP 288
+ V L VK +A+ H V+ T G+++T G +GQLG + + +
Sbjct: 141 KKSMVPVQVQLDVPVVK-VASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQ 199
Query: 289 TPRRVSSLKLKIIAVAAANKH------------TAVVSESGEVFTWGCNREGQLGYGTSN 336
R+ K ++ + H T +S G V+ +G + QLG T
Sbjct: 200 GLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLG--TPG 257
Query: 337 SASNYTPRVVESLKG--KDLVGVAAAKYHTIVLGADGERVIVAR---------NLKKSGS 385
+ S + P+ + S K K VG + ++HT+ + ++G+ + R + S
Sbjct: 258 TESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKS 317
Query: 386 TPLKFHRKIKLHVVSIAAGMVHSTALTEDGALFYWA 421
P R V S+A G A+T+DG +F W
Sbjct: 318 IPTLISRLPA--VSSVACGASVGYAVTKDGRVFAWG 351
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 80/181 (44%), Gaps = 9/181 (4%)
Query: 195 AAKFHSVAVTSLGEVYTWGYGRGGRLGHPDFDIHSGQAAVITPRRVTSGLGSRRVKT-IA 253
+ + A++ G VY +G +LG P G + P+ +TS S + +
Sbjct: 228 CGAYFTFAISHEGHVYGFGLSNYHQLGTP------GTESCFIPQNLTSFKNSTKSWVGFS 281
Query: 254 AAKHHTVLATEGGEVFTWGSNREGQLGY-TSVDTQPTPRRVSSLKLKIIAVAAANKHTAV 312
+HHTV G+ ++ G G+LG + + P +S L + +VA
Sbjct: 282 GGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLP-AVSSVACGASVGYA 340
Query: 313 VSESGEVFTWGCNREGQLGYGTSNSASNYTPRVVESLKGKDLVGVAAAKYHTIVLGADGE 372
V++ G VF WG QLG G A + + + L+ + ++ V++ HT++L D E
Sbjct: 341 VTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLLVKDKE 400
Query: 373 R 373
+
Sbjct: 401 Q 401
Score = 37.0 bits (84), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 70/169 (41%), Gaps = 17/169 (10%)
Query: 157 VFSWGSGANYQLGTGNAHLQKLPCKVDSLHGFVIKLI--SAAKFHSVAVTSLGEVYTWGY 214
V+ +G +QLGT +P + S + S + H+V + S G+ Y+ G
Sbjct: 242 VYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGR 301
Query: 215 GRGGRLGHPDFDIHSGQAAVITPRRVTSGLGSR--RVKTIAAAKHHTVLATEGGEVFTWG 272
GRLG + G P + SR V ++A T+ G VF WG
Sbjct: 302 AEYGRLG-----LGEGAEEKSIPTLI-----SRLPAVSSVACGASVGYAVTKDGRVFAWG 351
Query: 273 SNREGQLGYTSVDTQPTPRRVSSLKLK---IIAVAAANKHTAVVSESGE 318
QLG + +P + +L+ +++V++ +HT ++ + E
Sbjct: 352 MGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLLVKDKE 400
Score = 36.6 bits (83), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 58/128 (45%), Gaps = 27/128 (21%)
Query: 398 VVSIAAGMVHSTALTEDGALFYWASSDP-----DLRCQQLYSMCGR-----NVVSISAGK 447
VV AG +H+ L++ G ++ + +D D + + G+ VV +SAG
Sbjct: 50 VVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGD 109
Query: 448 YWTAAVTATGDVYMWDGKKSKDNPPLVTRLHGIKKA------------TSVSVGETHLLI 495
TAA+T G V++W +DN ++ L +KK+ V+ G HL++
Sbjct: 110 SHTAALTDDGRVFLWG--SFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGNDHLVM 167
Query: 496 V---GSLY 500
+ G LY
Sbjct: 168 LTADGDLY 175
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 69.7 bits (169), Expect = 9e-12, Method: Composition-based stats.
Identities = 40/108 (37%), Positives = 60/108 (55%), Gaps = 1/108 (0%)
Query: 30 DLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGAD 89
DL + E + A + + +L NG ++N+ + G TPLH A + + IV LL GAD
Sbjct: 13 DLGRKLLEAARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGAD 72
Query: 90 PDARDGESGWSSLHRALHFGHLAVASVLLQSGASITLEDCKSRTPVDL 137
DA D G++ LH A ++GHL + VLL++GA + D TP+ L
Sbjct: 73 VDASD-VFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHL 119
Score = 65.9 bits (159), Expect = 1e-10, Method: Composition-based stats.
Identities = 40/107 (37%), Positives = 61/107 (57%), Gaps = 5/107 (4%)
Query: 31 LCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADP 90
L LA G L VE +L K+G ++++ ++FG TPLH A + + IV LL GAD
Sbjct: 51 LHLAAYSGHLEIVE----VLLKHGADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGADV 106
Query: 91 DARDGESGWSSLHRALHFGHLAVASVLLQSGASITLEDCKSRTPVDL 137
+A D + G + LH A +G+L + VLL+ GA + +D +T D+
Sbjct: 107 NAMDSD-GMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFGKTAFDI 152
>pdb|3OF7|A Chain A, The Crystal Structure Of Prp20p From Saccharomyces
Cerevisiae And Its Binding Properties To Gsp1p And
Histones
Length = 473
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 101/411 (24%), Positives = 153/411 (37%), Gaps = 118/411 (28%)
Query: 156 EVFSWGSGANYQLGTGNAHLQKLPCKVDSLHGFV----IKLISAA--KFHSVAVTSLGEV 209
++F WG+G+ +LG G K K L+ F+ K+IS A H++A+ V
Sbjct: 30 DIFCWGTGSMCELGLGPLAKNK-EVKRPRLNPFLPRDEAKIISFAVGGMHTLALDEESNV 88
Query: 210 YTWGYGRGGRLGHPDF-----------------------DIHSGQAAVITPRRVTSGLGS 246
++WG G LG ++ S A + PR L
Sbjct: 89 WSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKI--PRESFPPLAE 146
Query: 247 -RRVKTIAAAKHHTVLATEGGEVFTWGSNR--EGQLGYTS--VDTQPTPRRVSSL-KLKI 300
+V +AA + + GEV+ WG+ R EG LG+ + Q TP +V + K I
Sbjct: 147 GHKVVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNI 206
Query: 301 IAVAAANKHTAVVSESGEVFTWGCNREGQLGYGTSNSASNYTPRVVESLKGKDLVGVAAA 360
+ +A H + E G VF WG ++ QL
Sbjct: 207 VQLAPGKDHILFLDEEGMVFAWGNGQQNQL------------------------------ 236
Query: 361 KYHTIVLGADGERVIVARNLKKSGSTPLKFHRKIKLHVVSIAAGMVHSTALTEDGALFYW 420
G +V+ LK P HV IA+G H ALT+D L W
Sbjct: 237 ----------GRKVMERFRLKTLDPRPFGLR-----HVKYIASGENHCFALTKDNKLVSW 281
Query: 421 ASSD-------PDLRCQQLYSMCGR-----NVV--SISAGKYWTAAVTATGDVY------ 460
+ D+ L + R NVV SI+AG++ + ++ GD+Y
Sbjct: 282 GLNQFGQCGVSEDVEDGALVTKPKRLALPDNVVIRSIAAGEHHSLILSQDGDLYSCGRLD 341
Query: 461 MWDGKKSKDN---------------PPLVTRLHGIKKATSVSVGETHLLIV 496
M++ KDN PL T+L+ + K SV+ G H + V
Sbjct: 342 MFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNVPKFKSVAAGSHHSVAV 392
Score = 67.0 bits (162), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 65/265 (24%), Positives = 109/265 (41%), Gaps = 39/265 (14%)
Query: 187 GFVIKLISAAKFHSVAVTSLGEVYTWGYGRG--GRLGHPDFDIHSGQAAVITPRRVTSGL 244
G + ++A S A+ S GEVY WG R G LG I + TP +V +
Sbjct: 147 GHKVVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQK----TPWKVPT-F 201
Query: 245 GSRRVKTIAAAKHHTVLATEGGEVFTWGSNREGQLGYTSVD------TQPTPRRVSSLKL 298
+ +A K H + E G VF WG+ ++ QLG ++ P P + +K
Sbjct: 202 SKYNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLKTLDPRPFGLRHVKY 261
Query: 299 KIIAVAAANKHTAVVSESGEVFTWGCNREGQLGYG--TSNSASNYTPRVVESLKGKDLVG 356
+A+ H +++ ++ +WG N+ GQ G + A P+ + +
Sbjct: 262 ----IASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALPDNVVIRS 317
Query: 357 VAAAKYHTIVLGADGERVIVAR-----------NLK---------KSGSTPLKFHRKIKL 396
+AA ++H+++L DG+ R NL K+ + PL
Sbjct: 318 IAAGEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNVP 377
Query: 397 HVVSIAAGMVHSTALTEDGALFYWA 421
S+AAG HS A+ ++G + W
Sbjct: 378 KFKSVAAGSHHSVAVAQNGIAYSWG 402
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/242 (23%), Positives = 113/242 (46%), Gaps = 29/242 (11%)
Query: 157 VFSWGSGANYQLGTGNAHLQKLPCKVDSLHGFV-IKLISAAKFHSVAVTSLGEVYTWGYG 215
VF+WG+G QLG +L G +K I++ + H A+T ++ +WG
Sbjct: 225 VFAWGNGQQNQLGRKVMERFRLKTLDPRPFGLRHVKYIASGENHCFALTKDNKLVSWGLN 284
Query: 216 RGGRLGHPDFDIHSGQAAVITPRRVTSGLGSRRVKTIAAAKHHTVLATEGGEVFTWGSNR 275
+ G+ G + D+ G A V P+R+ + +++IAA +HH+++ ++ G++++ G
Sbjct: 285 QFGQCGVSE-DVEDG-ALVTKPKRLALP-DNVVIRSIAAGEHHSLILSQDGDLYSCGRLD 341
Query: 276 EGQLG--------YTSVDTQ------PTPRRVSSLKLKIIAVAAANKHTAVVSESGEVFT 321
++G YT D P P +++++ K +VAA + H+ V+++G ++
Sbjct: 342 MFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNVP-KFKSVAAGSHHSVAVAQNGIAYS 400
Query: 322 WGCNREGQLGYGTSNSASNYTPRVVESLKGKDLVGVAAAKYHTIVLGADGERVIVARNLK 381
WG +G G + R+ + A + H I+L G + V+ +K
Sbjct: 401 WGFGETYAVGLGPFEDDTEVPTRIKNT----------ATQDHNIILVGCGGQFSVSGGVK 450
Query: 382 KS 383
S
Sbjct: 451 LS 452
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 81/210 (38%), Gaps = 45/210 (21%)
Query: 258 HTVLATEGGEVFTWGSNREGQLGYTSVDTQPTPRR------VSSLKLKIIAVAAANKHTA 311
H L+ + ++F WG+ +LG + +R + + KII+ A HT
Sbjct: 21 HMYLSVQPLDIFCWGTGSMCELGLGPLAKNKEVKRPRLNPFLPRDEAKIISFAVGGMHTL 80
Query: 312 VVSESGEVFTWGCNREGQLGYGTSNSASNY---------------------TPRVV--ES 348
+ E V++WGCN G LG TSN+ TP + ES
Sbjct: 81 ALDEESNVWSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRES 140
Query: 349 L----KGKDLVGVAAAKYHTIVLGADGERVI------------VARNLKKSGSTPLKFHR 392
+G +V +AA + L ++GE ++ K TP K
Sbjct: 141 FPPLAEGHKVVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPT 200
Query: 393 KIKLHVVSIAAGMVHSTALTEDGALFYWAS 422
K ++V +A G H L E+G +F W +
Sbjct: 201 FSKYNIVQLAPGKDHILFLDEEGMVFAWGN 230
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 72/180 (40%), Gaps = 24/180 (13%)
Query: 155 TEVFSWGSGANYQLGTG----NAHLQKLPCKVDSLHGFVIKLISAAKFHSVAVTSLGEVY 210
++ SWG Q G + L P ++ VI+ I+A + HS+ ++ G++Y
Sbjct: 276 NKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALPDNVVIRSIAAGEHHSLILSQDGDLY 335
Query: 211 TWGYGRGGRLGHPD--------FDIHSGQAAVITPRRVTSGLGSRRVKTIAAAKHHTVLA 262
+ G +G P D+H AV P ++ + + K++AA HH+V
Sbjct: 336 SCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNN---VPKFKSVAAGSHHSVAV 392
Query: 263 TEGGEVFTWGSNREGQLGYTSV-DTQPTPRRVSSLKLKIIAVAAANKHTAVVSESGEVFT 321
+ G ++WG +G D P R+ + A H ++ G F+
Sbjct: 393 AQNGIAYSWGFGETYAVGLGPFEDDTEVPTRIKN--------TATQDHNIILVGCGGQFS 444
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 69.3 bits (168), Expect = 1e-11, Method: Composition-based stats.
Identities = 43/107 (40%), Positives = 61/107 (57%), Gaps = 5/107 (4%)
Query: 31 LCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADP 90
L LA G L VE +L KNG ++N+++ G+TPLH A R + IV LL GAD
Sbjct: 51 LHLAAHFGHLEIVE----VLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADV 106
Query: 91 DARDGESGWSSLHRALHFGHLAVASVLLQSGASITLEDCKSRTPVDL 137
+A D G++ LH A GHL + VLL++GA + +D +T D+
Sbjct: 107 NASDSH-GFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFGKTAFDI 152
Score = 66.2 bits (160), Expect = 1e-10, Method: Composition-based stats.
Identities = 40/108 (37%), Positives = 58/108 (53%), Gaps = 1/108 (0%)
Query: 30 DLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGAD 89
DL + E + A + + +L NG ++N+R+ G TPLH A + IV LL GAD
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGAD 72
Query: 90 PDARDGESGWSSLHRALHFGHLAVASVLLQSGASITLEDCKSRTPVDL 137
+A+D G + LH A GHL + VLL++GA + D TP+ L
Sbjct: 73 VNAKD-SLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHL 119
Score = 47.8 bits (112), Expect = 3e-05, Method: Composition-based stats.
Identities = 33/74 (44%), Positives = 41/74 (55%), Gaps = 6/74 (8%)
Query: 21 KSSLGGVQKDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIV 80
K SLG L LA R G L VE +L KNG ++N+ + G TPLH A R + IV
Sbjct: 76 KDSLG--VTPLHLAARRGHLEIVE----VLLKNGADVNASDSHGFTPLHLAAKRGHLEIV 129
Query: 81 RRLLAAGADPDARD 94
LL GAD +A+D
Sbjct: 130 EVLLKNGADVNAQD 143
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 68.9 bits (167), Expect = 1e-11, Method: Composition-based stats.
Identities = 43/107 (40%), Positives = 64/107 (59%), Gaps = 5/107 (4%)
Query: 31 LCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADP 90
L LA R G L V+ LL + G ++N+++ G TPLH A + +V+ LL AGAD
Sbjct: 6 LHLAARNGHLEVVK----LLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 91 DARDGESGWSSLHRALHFGHLAVASVLLQSGASITLEDCKSRTPVDL 137
+A+D ++G + LH A GHL V +LL++GA + +D RTP+ L
Sbjct: 62 NAKD-KNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHL 107
Score = 58.9 bits (141), Expect = 1e-08, Method: Composition-based stats.
Identities = 38/92 (41%), Positives = 56/92 (60%), Gaps = 5/92 (5%)
Query: 31 LCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADP 90
L LA R G L V+ LL + G ++N+++ G TPLH A + +V+ LL AGAD
Sbjct: 39 LHLAARNGHLEVVK----LLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 94
Query: 91 DARDGESGWSSLHRALHFGHLAVASVLLQSGA 122
+A+D ++G + LH A GHL V +LL++GA
Sbjct: 95 NAKD-KNGRTPLHLAARNGHLEVVKLLLEAGA 125
Score = 58.2 bits (139), Expect = 2e-08, Method: Composition-based stats.
Identities = 32/74 (43%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 64 GLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRALHFGHLAVASVLLQSGAS 123
G TPLH A + +V+ LL AGAD +A+D ++G + LH A GHL V +LL++GA
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKD-KNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 124 ITLEDCKSRTPVDL 137
+ +D RTP+ L
Sbjct: 61 VNAKDKNGRTPLHL 74
Score = 35.8 bits (81), Expect = 0.13, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 97 SGWSSLHRALHFGHLAVASVLLQSGASITLEDCKSRTPVDL 137
+G + LH A GHL V +LL++GA + +D RTP+ L
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHL 41
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 68.6 bits (166), Expect = 2e-11, Method: Composition-based stats.
Identities = 40/111 (36%), Positives = 62/111 (55%), Gaps = 1/111 (0%)
Query: 30 DLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGAD 89
DL + E + A + + +L NG ++N+++ +GLTPL+ A + IV LL GAD
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGAD 72
Query: 90 PDARDGESGWSSLHRALHFGHLAVASVLLQSGASITLEDCKSRTPVDLLSG 140
+A D G++ LH A GHL +A VLL+ GA + +D +T D+ G
Sbjct: 73 VNAVDA-IGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIG 122
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 68.2 bits (165), Expect = 2e-11, Method: Composition-based stats.
Identities = 42/107 (39%), Positives = 61/107 (57%), Gaps = 5/107 (4%)
Query: 31 LCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADP 90
L LA G L VE +L KNG ++N+ + G+TPLH A R + +V LL GAD
Sbjct: 51 LHLAAYFGHLEIVE----VLLKNGADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGADV 106
Query: 91 DARDGESGWSSLHRALHFGHLAVASVLLQSGASITLEDCKSRTPVDL 137
+A D +G++ LH A + GHL + VLL+ GA + +D +T D+
Sbjct: 107 NAND-HNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFGKTAFDI 152
Score = 63.2 bits (152), Expect = 7e-10, Method: Composition-based stats.
Identities = 40/108 (37%), Positives = 57/108 (52%), Gaps = 1/108 (0%)
Query: 30 DLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGAD 89
DL + E + A + + +L NG ++N+ + G TPLH A + + IV LL GAD
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGAD 72
Query: 90 PDARDGESGWSSLHRALHFGHLAVASVLLQSGASITLEDCKSRTPVDL 137
+A D G + LH A GHL V VLL++GA + D TP+ L
Sbjct: 73 VNA-DDSLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHL 119
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 67.8 bits (164), Expect = 3e-11, Method: Composition-based stats.
Identities = 42/107 (39%), Positives = 60/107 (56%), Gaps = 5/107 (4%)
Query: 31 LCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADP 90
L LA G L VE +L KNG ++N+ ++ G+TPLH A + IV LL GAD
Sbjct: 51 LHLAASNGHLEIVE----VLLKNGADVNASDLTGITPLHLAAATGHLEIVEVLLKHGADV 106
Query: 91 DARDGESGWSSLHRALHFGHLAVASVLLQSGASITLEDCKSRTPVDL 137
+A D + G + LH A +GHL + VLL+ GA + +D +T D+
Sbjct: 107 NAYDND-GHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFGKTAFDI 152
Score = 60.8 bits (146), Expect = 4e-09, Method: Composition-based stats.
Identities = 39/108 (36%), Positives = 56/108 (51%), Gaps = 1/108 (0%)
Query: 30 DLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGAD 89
DL + E + A + + +L NG ++N+ + G TPLH A + IV LL GAD
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGAD 72
Query: 90 PDARDGESGWSSLHRALHFGHLAVASVLLQSGASITLEDCKSRTPVDL 137
+A D +G + LH A GHL + VLL+ GA + D TP+ L
Sbjct: 73 VNASD-LTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHL 119
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 67.0 bits (162), Expect = 5e-11, Method: Composition-based stats.
Identities = 39/108 (36%), Positives = 59/108 (54%), Gaps = 1/108 (0%)
Query: 30 DLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGAD 89
DL + E + A + + +L NG ++N+ + G TPLH A + + IV LL GAD
Sbjct: 13 DLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGAD 72
Query: 90 PDARDGESGWSSLHRALHFGHLAVASVLLQSGASITLEDCKSRTPVDL 137
+A D +G + L A FGHL + VLL++GA + D + TP+ L
Sbjct: 73 VNAVD-HAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHL 119
Score = 64.3 bits (155), Expect = 3e-10, Method: Composition-based stats.
Identities = 43/107 (40%), Positives = 59/107 (55%), Gaps = 5/107 (4%)
Query: 31 LCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADP 90
L LA G L VE +L KNG ++N+ + G+TPL A + IV LL GAD
Sbjct: 51 LHLAAFNGHLEIVE----VLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADV 106
Query: 91 DARDGESGWSSLHRALHFGHLAVASVLLQSGASITLEDCKSRTPVDL 137
+A D E G + LH A FGHL + VLL++GA + +D +T D+
Sbjct: 107 NANDME-GHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDI 152
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 67.0 bits (162), Expect = 5e-11, Method: Composition-based stats.
Identities = 42/107 (39%), Positives = 58/107 (54%), Gaps = 5/107 (4%)
Query: 31 LCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADP 90
L LA G L VE +L KNG ++N+ + G+TPLH A + + IV LL GAD
Sbjct: 43 LHLAAANGQLEIVE----VLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGADV 98
Query: 91 DARDGESGWSSLHRALHFGHLAVASVLLQSGASITLEDCKSRTPVDL 137
+A D +GW+ LH A G L + VLL+ GA + +D T D+
Sbjct: 99 NAYD-RAGWTPLHLAALSGQLEIVEVLLKHGADVNAQDALGLTAFDI 144
Score = 66.6 bits (161), Expect = 6e-11, Method: Composition-based stats.
Identities = 44/114 (38%), Positives = 63/114 (55%), Gaps = 3/114 (2%)
Query: 29 KDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGA 88
+DL + E + A + + +L NG ++N+ + GLTPLH A Q+ IV LL GA
Sbjct: 4 QDLGKKLLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGA 63
Query: 89 DPDARDGESGWSSLHRALHFGHLAVASVLLQSGASITLEDCKSRTPVDL--LSG 140
D +A D +G + LH A + GHL + VLL+ GA + D TP+ L LSG
Sbjct: 64 DVNASD-SAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSG 116
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 5/87 (5%)
Query: 31 LCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADP 90
L LA +G L VE +L K+G ++N+ + G TPLH A Q+ IV LL GAD
Sbjct: 76 LHLAAYDGHLEIVE----VLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGADV 131
Query: 91 DARDGESGWSSLHRALHFGHLAVASVL 117
+A+D G ++ +++ G +A +L
Sbjct: 132 NAQDA-LGLTAFDISINQGQEDLAEIL 157
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 65.5 bits (158), Expect = 1e-10, Method: Composition-based stats.
Identities = 42/107 (39%), Positives = 61/107 (57%), Gaps = 5/107 (4%)
Query: 31 LCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADP 90
L LA + G L VE +L K G ++N+ + +G TPLH A + IV LL GAD
Sbjct: 51 LHLAAKTGHLEIVE----VLLKYGADVNAWDNYGATPLHLAADNGHLEIVEVLLKHGADV 106
Query: 91 DARDGESGWSSLHRALHFGHLAVASVLLQSGASITLEDCKSRTPVDL 137
+A+D E G++ LH A + GHL + VLL+ GA + +D +T D+
Sbjct: 107 NAKDYE-GFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKFGKTAFDI 152
Score = 62.0 bits (149), Expect = 2e-09, Method: Composition-based stats.
Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 1/108 (0%)
Query: 30 DLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGAD 89
DL + E + A + + +L NG ++N+ + G TPLH A + IV LL GAD
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGAD 72
Query: 90 PDARDGESGWSSLHRALHFGHLAVASVLLQSGASITLEDCKSRTPVDL 137
+A D G + LH A GHL + VLL+ GA + +D + TP+ L
Sbjct: 73 VNAWD-NYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHL 119
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 65.5 bits (158), Expect = 2e-10, Method: Composition-based stats.
Identities = 44/138 (31%), Positives = 68/138 (49%), Gaps = 8/138 (5%)
Query: 30 DLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGAD 89
DL + E + A + + +L NG ++N+ + +G TPLH A + IV LL GAD
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGAD 72
Query: 90 PDARDGESGWSSLHRALHFGHLAVASVLLQSGASITLEDCKSRTPVDLLSGPVLQVVGSG 149
+A D SG + LH A GHL + VLL+ GA + +D TP+ L +G
Sbjct: 73 VNALDF-SGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHL-------AADTG 124
Query: 150 YNSVATEVFSWGSGANYQ 167
+ + + +G+ N Q
Sbjct: 125 HLEIVEVLLKYGADVNAQ 142
Score = 64.7 bits (156), Expect = 2e-10, Method: Composition-based stats.
Identities = 44/107 (41%), Positives = 58/107 (54%), Gaps = 5/107 (4%)
Query: 31 LCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADP 90
L LA R G L VE +L KNG ++N+ + G TPLH A R + IV LL GAD
Sbjct: 51 LHLAARVGHLEIVE----VLLKNGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADV 106
Query: 91 DARDGESGWSSLHRALHFGHLAVASVLLQSGASITLEDCKSRTPVDL 137
+A D G + LH A GHL + VLL+ GA + +D +T D+
Sbjct: 107 NA-DDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQDKFGKTAFDI 152
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 65.1 bits (157), Expect = 2e-10, Method: Composition-based stats.
Identities = 40/108 (37%), Positives = 59/108 (54%), Gaps = 1/108 (0%)
Query: 30 DLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGAD 89
DL + E + A + + +L NG ++N+ + G+TPLH A R + IV LL GAD
Sbjct: 13 DLGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGAD 72
Query: 90 PDARDGESGWSSLHRALHFGHLAVASVLLQSGASITLEDCKSRTPVDL 137
+ARD G + LH A GHL + VLL+ GA + +D +T D+
Sbjct: 73 VNARD-IWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDI 119
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 65.1 bits (157), Expect = 2e-10, Method: Composition-based stats.
Identities = 38/108 (35%), Positives = 58/108 (53%), Gaps = 1/108 (0%)
Query: 30 DLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGAD 89
DL + E + A + + +L NG ++N+ + GLTPLH A + + IV LL GAD
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGAD 72
Query: 90 PDARDGESGWSSLHRALHFGHLAVASVLLQSGASITLEDCKSRTPVDL 137
+A D G + LH +GHL + VLL+ GA + +D +T D+
Sbjct: 73 VNAIDA-IGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDI 119
Score = 41.6 bits (96), Expect = 0.003, Method: Composition-based stats.
Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 80 VRRLLAAGADPDARDGESGWSSLHRALHFGHLAVASVLLQSGASITLEDCKSRTPVDLLS 139
VR L+A GAD +A D + G + LH A HL + VLL++GA + D TP+ L++
Sbjct: 30 VRILMANGADVNAED-KVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLVA 88
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 65.1 bits (157), Expect = 2e-10, Method: Composition-based stats.
Identities = 43/138 (31%), Positives = 69/138 (50%), Gaps = 8/138 (5%)
Query: 30 DLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGAD 89
DL + E + A + + +L NG ++N+ + G TPLH A + + IV LL GAD
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGAD 72
Query: 90 PDARDGESGWSSLHRALHFGHLAVASVLLQSGASITLEDCKSRTPVDLLSGPVLQVVGSG 149
+A D + G + LH A +GHL + VLL++GA + D TP+ L +G
Sbjct: 73 VNAAD-KMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHL-------AADAG 124
Query: 150 YNSVATEVFSWGSGANYQ 167
+ + + +G+ N Q
Sbjct: 125 HLEIVEVLLKYGADVNAQ 142
Score = 60.1 bits (144), Expect = 6e-09, Method: Composition-based stats.
Identities = 41/107 (38%), Positives = 58/107 (54%), Gaps = 5/107 (4%)
Query: 31 LCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADP 90
L LA +G L VE +L K+G ++N+ + G TPLH A + IV LL GAD
Sbjct: 51 LHLAAIKGHLEIVE----VLLKHGADVNAADKMGDTPLHLAALYGHLEIVEVLLKNGADV 106
Query: 91 DARDGESGWSSLHRALHFGHLAVASVLLQSGASITLEDCKSRTPVDL 137
+A D G++ LH A GHL + VLL+ GA + +D +T D+
Sbjct: 107 NATD-TYGFTPLHLAADAGHLEIVEVLLKYGADVNAQDKFGKTAFDI 152
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 64.7 bits (156), Expect = 2e-10, Method: Composition-based stats.
Identities = 45/138 (32%), Positives = 66/138 (47%), Gaps = 8/138 (5%)
Query: 30 DLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGAD 89
DL + E + A + + +L NG ++N+ + GLTPLH A + IV LL GAD
Sbjct: 13 DLGKKLLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGAD 72
Query: 90 PDARDGESGWSSLHRALHFGHLAVASVLLQSGASITLEDCKSRTPVDLLSGPVLQVVGSG 149
DA D G++ LH A GHL + VLL+ GA + D TP+ L G
Sbjct: 73 VDAAD-VYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHL-------AADEG 124
Query: 150 YNSVATEVFSWGSGANYQ 167
+ + + +G+ N Q
Sbjct: 125 HLEIVEVLLKYGADVNAQ 142
Score = 62.0 bits (149), Expect = 2e-09, Method: Composition-based stats.
Identities = 40/107 (37%), Positives = 59/107 (55%), Gaps = 5/107 (4%)
Query: 31 LCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADP 90
L LA G L VE +L K+G ++++ +++G TPLH A + IV LL GAD
Sbjct: 51 LHLAAVSGHLEIVE----VLLKHGADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADV 106
Query: 91 DARDGESGWSSLHRALHFGHLAVASVLLQSGASITLEDCKSRTPVDL 137
+A D +G + LH A GHL + VLL+ GA + +D +T D+
Sbjct: 107 NAFD-MTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDKFGKTAFDI 152
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 63.9 bits (154), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Query: 49 LLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRALHF 108
LL G + N+++ G TPLH A IV+ LL+ GADP+A+D + G + LH A
Sbjct: 55 LLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSD-GRTPLHYAAEN 113
Query: 109 GHLAVASVLLQSGASITLEDCKSRTPVDL 137
GH + +LL GA D RTP+DL
Sbjct: 114 GHKEIVKLLLSKGADPNTSDSDGRTPLDL 142
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 68/146 (46%), Gaps = 15/146 (10%)
Query: 50 LKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRALHFG 109
L +NG + N+ + G TPLH A IV+ LL+ GADP+A+D + G + LH A G
Sbjct: 23 LLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSD-GRTPLHYAAENG 81
Query: 110 HLAVASVLLQSGASITLEDCKSRTPVDLLSGPVLQVVGSGYNSVATEVFSWGSGANYQLG 169
H + +LL GA +D RTP+ +G+ + + S G+ N
Sbjct: 82 HKEIVKLLLSKGADPNAKDSDGRTPLHY-------AAENGHKEIVKLLLSKGADPNTSDS 134
Query: 170 TGNAHLQKLPCKVDSLHGF--VIKLI 193
G + P + HG ++KL+
Sbjct: 135 DG-----RTPLDLAREHGNEEIVKLL 155
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 51/114 (44%), Gaps = 11/114 (9%)
Query: 80 VRRLLAAGADPDARDGESGWSSLHRALHFGHLAVASVLLQSGASITLEDCKSRTPVDLLS 139
V+ LL GADP+A D + G + LH A GH + +LL GA +D RTP+
Sbjct: 20 VKDLLENGADPNASDSD-GRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHY-- 76
Query: 140 GPVLQVVGSGYNSVATEVFSWGSGANYQLGTGNAHLQKLPCKVDSLHGFVIKLI 193
+G+ + + S G+ N + G L ++ H ++KL+
Sbjct: 77 -----AAENGHKEIVKLLLSKGADPNAKDSDGRTPLH---YAAENGHKEIVKLL 122
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 63.9 bits (154), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 70/146 (47%), Gaps = 15/146 (10%)
Query: 50 LKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRALHFG 109
L +NG ++N+ + G TPLH A +V+ LL+ GADP+A+D + G + LH A G
Sbjct: 23 LLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSD-GKTPLHLAAENG 81
Query: 110 HLAVASVLLQSGASITLEDCKSRTPVDLLSGPVLQVVGSGYNSVATEVFSWGSGANYQLG 169
H V +LL GA +D +TP+ L +G+ V + S G+ N
Sbjct: 82 HKEVVKLLLSQGADPNAKDSDGKTPLHL-------AAENGHKEVVKLLLSQGADPNTSDS 134
Query: 170 TGNAHLQKLPCKVDSLHGF--VIKLI 193
G + P + HG V+KL+
Sbjct: 135 DG-----RTPLDLAREHGNEEVVKLL 155
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Query: 49 LLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRALHF 108
LL G + N+++ G TPLH A +V+ LL+ GADP+A+D + G + LH A
Sbjct: 55 LLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSD-GKTPLHLAAEN 113
Query: 109 GHLAVASVLLQSGASITLEDCKSRTPVDL 137
GH V +LL GA D RTP+DL
Sbjct: 114 GHKEVVKLLLSQGADPNTSDSDGRTPLDL 142
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 63.5 bits (153), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 57/107 (53%), Gaps = 5/107 (4%)
Query: 31 LCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADP 90
L A +EG + + LL G ++N+++ G TPLH A IV+ L++ GAD
Sbjct: 41 LHYAAKEGH----KEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADV 96
Query: 91 DARDGESGWSSLHRALHFGHLAVASVLLQSGASITLEDCKSRTPVDL 137
+A+D + G + LH A GH + +L+ GA + D RTP+DL
Sbjct: 97 NAKDSD-GRTPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDL 142
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 50 LKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRALHFG 109
L +NG ++N+ + G TPLH A IV+ L++ GAD +A+D + G + LH A G
Sbjct: 23 LIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSD-GRTPLHYAAKEG 81
Query: 110 HLAVASVLLQSGASITLEDCKSRTPV 135
H + +L+ GA + +D RTP+
Sbjct: 82 HKEIVKLLISKGADVNAKDSDGRTPL 107
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 63.5 bits (153), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 47 LALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRAL 106
+ LL G ++N+++ G TPLH A +V+ L++ GAD +A+D + G + LH A
Sbjct: 53 VKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSD-GRTPLHHAA 111
Query: 107 HFGHLAVASVLLQSGASITLEDCKSRTPVDL 137
GH V +L+ GA + D RTP+DL
Sbjct: 112 ENGHKEVVKLLISKGADVNTSDSDGRTPLDL 142
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 69/146 (47%), Gaps = 15/146 (10%)
Query: 50 LKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRALHFG 109
L +NG ++N+ + G TPLH A +V+ L++ GAD +A+D + G + LH A G
Sbjct: 23 LIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSD-GRTPLHHAAENG 81
Query: 110 HLAVASVLLQSGASITLEDCKSRTPVDLLSGPVLQVVGSGYNSVATEVFSWGSGANYQLG 169
H V +L+ GA + +D RTP+ +G+ V + S G+ N
Sbjct: 82 HKEVVKLLISKGADVNAKDSDGRTPLH-------HAAENGHKEVVKLLISKGADVNTSDS 134
Query: 170 TGNAHLQKLPCKVDSLHGF--VIKLI 193
G + P + HG V+KL+
Sbjct: 135 DG-----RTPLDLAREHGNEEVVKLL 155
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 63.5 bits (153), Expect = 6e-10, Method: Composition-based stats.
Identities = 39/108 (36%), Positives = 59/108 (54%), Gaps = 1/108 (0%)
Query: 30 DLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGAD 89
DL + E + A + + +L NG ++N+ + G TPLH A + + IV LL GAD
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGAD 72
Query: 90 PDARDGESGWSSLHRALHFGHLAVASVLLQSGASITLEDCKSRTPVDL 137
+A D + G + LH A FGHL + VLL+ GA + +D +T D+
Sbjct: 73 VNAHDND-GSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDI 119
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 63.2 bits (152), Expect = 7e-10, Method: Composition-based stats.
Identities = 39/108 (36%), Positives = 58/108 (53%), Gaps = 1/108 (0%)
Query: 30 DLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGAD 89
DL + E + A + + +L NG ++N+ + G+TPLH A R + IV LL GAD
Sbjct: 13 DLGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGAD 72
Query: 90 PDARDGESGWSSLHRALHFGHLAVASVLLQSGASITLEDCKSRTPVDL 137
+A D G + LH A GHL + VLL+ GA + +D +T D+
Sbjct: 73 VNASD-SWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDI 119
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 62.8 bits (151), Expect = 1e-09, Method: Composition-based stats.
Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 1/108 (0%)
Query: 30 DLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGAD 89
DL + E + A + + +L NG + N+ + +G TPLH A + IV LL GAD
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGAD 60
Query: 90 PDARDGESGWSSLHRALHFGHLAVASVLLQSGASITLEDCKSRTPVDL 137
+A D +G + LH A GHL + VLL+ GA + +D TP+ L
Sbjct: 61 VNAVD-TNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYL 107
Score = 62.0 bits (149), Expect = 1e-09, Method: Composition-based stats.
Identities = 39/107 (36%), Positives = 60/107 (56%), Gaps = 5/107 (4%)
Query: 31 LCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADP 90
L +A G L VE +L +NG ++N+ + G TPLH A + IV LL GAD
Sbjct: 39 LHMAAAVGHLEIVE----VLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADV 94
Query: 91 DARDGESGWSSLHRALHFGHLAVASVLLQSGASITLEDCKSRTPVDL 137
+A+D +G + L+ A ++GHL + VLL+ GA + +D +T D+
Sbjct: 95 NAKDA-TGITPLYLAAYWGHLEIVEVLLKHGADVNAQDKFGKTAFDI 140
Score = 40.4 bits (93), Expect = 0.005, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 5/87 (5%)
Query: 31 LCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADP 90
L LA G L VE +L K G ++N+++ G+TPL+ A + + IV LL GAD
Sbjct: 72 LHLAASLGHLEIVE----VLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADV 127
Query: 91 DARDGESGWSSLHRALHFGHLAVASVL 117
+A+D + G ++ ++ G+ +A +L
Sbjct: 128 NAQD-KFGKTAFDISIDIGNEDLAEIL 153
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 62.4 bits (150), Expect = 1e-09, Method: Composition-based stats.
Identities = 39/108 (36%), Positives = 58/108 (53%), Gaps = 1/108 (0%)
Query: 30 DLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGAD 89
DL + E + A + + +L NG ++N+ + G+TPLH A R + IV LL GAD
Sbjct: 13 DLGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGAD 72
Query: 90 PDARDGESGWSSLHRALHFGHLAVASVLLQSGASITLEDCKSRTPVDL 137
+A D G + LH A GHL + VLL+ GA + +D +T D+
Sbjct: 73 VNASD-IWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDI 119
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 61.6 bits (148), Expect = 2e-09, Method: Composition-based stats.
Identities = 40/108 (37%), Positives = 56/108 (51%), Gaps = 1/108 (0%)
Query: 30 DLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGAD 89
DL + E + A + + +L NG ++N+ + GLTPLH A + IV LL GAD
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGAD 72
Query: 90 PDARDGESGWSSLHRALHFGHLAVASVLLQSGASITLEDCKSRTPVDL 137
+A D G + LH A GHL + VLL+ GA + D TP+ L
Sbjct: 73 VNAID-IXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHL 119
Score = 58.5 bits (140), Expect = 2e-08, Method: Composition-based stats.
Identities = 42/107 (39%), Positives = 57/107 (53%), Gaps = 5/107 (4%)
Query: 31 LCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADP 90
L LA G L VE +L K+G ++N+ +I G TPLH A + IV LL GAD
Sbjct: 51 LHLAATYGHLEIVE----VLLKHGADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGADV 106
Query: 91 DARDGESGWSSLHRALHFGHLAVASVLLQSGASITLEDCKSRTPVDL 137
+A D G + LH A GHL + VLL+ GA + +D +T D+
Sbjct: 107 NAVD-TWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDI 152
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 55/99 (55%), Gaps = 2/99 (2%)
Query: 39 SLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESG 98
S D E L LL++ G +IN N+ GLT LH A + V +V+ L+ GA+ + D E G
Sbjct: 49 SSGDTEEVLRLLER-GADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNE-G 106
Query: 99 WSSLHRALHFGHLAVASVLLQSGASITLEDCKSRTPVDL 137
W LH A G+L +A L+ GA + + + TP+D+
Sbjct: 107 WIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDI 145
Score = 34.3 bits (77), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Query: 53 NGGNINS--RNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRALHFGH 110
N G+IN G T LH A + +++ L+ A D + +D + GW+ LH A H+G
Sbjct: 186 NSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYD-GWTPLHAAAHWGK 244
Query: 111 LAVASVLLQSGASITLEDCKSRTPVDLLSGPVL 143
+L+++ + + +T D+ +L
Sbjct: 245 EEACRILVENLCDMEAVNKVGQTAFDVADEDIL 277
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 30/55 (54%)
Query: 81 RRLLAAGADPDARDGESGWSSLHRALHFGHLAVASVLLQSGASITLEDCKSRTPV 135
R+ L +G D R +SG ++LH A G+ V +L+Q+ + ++D TP+
Sbjct: 182 RQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPL 236
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 61.2 bits (147), Expect = 3e-09, Method: Composition-based stats.
Identities = 40/108 (37%), Positives = 56/108 (51%), Gaps = 1/108 (0%)
Query: 30 DLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGAD 89
DL + E + A + + +L NG ++N+ + GLTPLH A + IV LL GAD
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGAD 72
Query: 90 PDARDGESGWSSLHRALHFGHLAVASVLLQSGASITLEDCKSRTPVDL 137
+A D G + LH A GHL + VLL+ GA + D TP+ L
Sbjct: 73 VNAID-IMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHL 119
Score = 59.3 bits (142), Expect = 1e-08, Method: Composition-based stats.
Identities = 42/107 (39%), Positives = 57/107 (53%), Gaps = 5/107 (4%)
Query: 31 LCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADP 90
L LA G L VE +L K+G ++N+ +I G TPLH A + IV LL GAD
Sbjct: 51 LHLAATYGHLEIVE----VLLKHGADVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADV 106
Query: 91 DARDGESGWSSLHRALHFGHLAVASVLLQSGASITLEDCKSRTPVDL 137
+A D G + LH A GHL + VLL+ GA + +D +T D+
Sbjct: 107 NAVD-TWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDI 152
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 60.8 bits (146), Expect = 4e-09, Method: Composition-based stats.
Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 1/108 (0%)
Query: 30 DLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGAD 89
DL + E + A + + +L NG ++N+ + GLTPLH A + IV LL GAD
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGAD 72
Query: 90 PDARDGESGWSSLHRALHFGHLAVASVLLQSGASITLEDCKSRTPVDL 137
+A D G + LH A GHL + VLL+ GA + +D +T D+
Sbjct: 73 VNAED-NFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDI 119
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 60.1 bits (144), Expect = 7e-09, Method: Composition-based stats.
Identities = 37/108 (34%), Positives = 57/108 (52%), Gaps = 1/108 (0%)
Query: 30 DLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGAD 89
DL + E + A + + +L NG ++N+ + +G TPLH A + IV LL GAD
Sbjct: 13 DLGKKLLEAARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGAD 72
Query: 90 PDARDGESGWSSLHRALHFGHLAVASVLLQSGASITLEDCKSRTPVDL 137
+A G +G + LH A HL + VLL+ GA + +D +T D+
Sbjct: 73 VNA-TGNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDI 119
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 52/90 (57%), Gaps = 2/90 (2%)
Query: 48 ALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRALH 107
ALL K G +N+ N G TPLH A +N+ I LL GA+PDA+D +++HRA
Sbjct: 92 ALLGK-GAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEA-TAMHRAAA 149
Query: 108 FGHLAVASVLLQSGASITLEDCKSRTPVDL 137
G+L + +LL AS ++D + TP+ L
Sbjct: 150 KGNLKMIHILLYYKASTNIQDTEGNTPLHL 179
Score = 33.5 bits (75), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Query: 66 TPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRALHFGHLAVASVLLQSGASIT 125
T LH A IV LL G + +D ++GWS LH A G + LL GA +
Sbjct: 43 TALHWACSAGHTEIVEFLLQLGVPVNDKD-DAGWSPLHIAASAGRDEIVKALLGKGAQVN 101
Query: 126 LEDCKSRTPV 135
+ TP+
Sbjct: 102 AVNQNGCTPL 111
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 52/90 (57%), Gaps = 2/90 (2%)
Query: 48 ALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRALH 107
ALL K G +N+ N G TPLH A +N+ I LL GA+PDA+D +++HRA
Sbjct: 91 ALLGK-GAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEA-TAMHRAAA 148
Query: 108 FGHLAVASVLLQSGASITLEDCKSRTPVDL 137
G+L + +LL AS ++D + TP+ L
Sbjct: 149 KGNLKMIHILLYYKASTNIQDTEGNTPLHL 178
Score = 33.1 bits (74), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Query: 66 TPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRALHFGHLAVASVLLQSGASIT 125
T LH A IV LL G + +D ++GWS LH A G + LL GA +
Sbjct: 42 TALHWACSAGHTEIVEFLLQLGVPVNDKD-DAGWSPLHIAASAGRDEIVKALLGKGAQVN 100
Query: 126 LEDCKSRTPV 135
+ TP+
Sbjct: 101 AVNQNGCTPL 110
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 59.3 bits (142), Expect = 1e-08, Method: Composition-based stats.
Identities = 38/92 (41%), Positives = 56/92 (60%), Gaps = 5/92 (5%)
Query: 31 LCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADP 90
L LA R G L V+ LL + G ++N+++ G TPLH A + +V+ LL AGAD
Sbjct: 6 LHLAARNGHLEVVK----LLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 91 DARDGESGWSSLHRALHFGHLAVASVLLQSGA 122
+A+D ++G + LH A GHL V +LL++GA
Sbjct: 62 NAKD-KNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 58.5 bits (140), Expect = 2e-08, Method: Composition-based stats.
Identities = 32/74 (43%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 64 GLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRALHFGHLAVASVLLQSGAS 123
G TPLH A + +V+ LL AGAD +A+D ++G + LH A GHL V +LL++GA
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKD-KNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 124 ITLEDCKSRTPVDL 137
+ +D RTP+ L
Sbjct: 61 VNAKDKNGRTPLHL 74
Score = 35.8 bits (81), Expect = 0.12, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 97 SGWSSLHRALHFGHLAVASVLLQSGASITLEDCKSRTPVDL 137
+G + LH A GHL V +LL++GA + +D RTP+ L
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHL 41
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 53/90 (58%), Gaps = 2/90 (2%)
Query: 48 ALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRALH 107
ALL K G ++N+ N G TPLH A +N+ I LL GA+PDA+D +++HRA
Sbjct: 91 ALLVK-GAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDA-TAMHRAAA 148
Query: 108 FGHLAVASVLLQSGASITLEDCKSRTPVDL 137
G+L + +LL AS ++D + TP+ L
Sbjct: 149 KGNLKMVHILLFYKASTNIQDTEGNTPLHL 178
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Query: 66 TPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRALHFGHLAVASVLLQSGASIT 125
T LH A IV LL G + +D ++GWS LH A G + LL GA +
Sbjct: 42 TALHWACSAGHTEIVEFLLQLGVPVNDKD-DAGWSPLHIAASAGXDEIVKALLVKGAHVN 100
Query: 126 LEDCKSRTPV 135
+ TP+
Sbjct: 101 AVNQNGCTPL 110
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 53/90 (58%), Gaps = 2/90 (2%)
Query: 48 ALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRALH 107
ALL K G ++N+ N G TPLH A +N+ I LL GA+PDA+D +++HRA
Sbjct: 91 ALLVK-GAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDA-TAMHRAAA 148
Query: 108 FGHLAVASVLLQSGASITLEDCKSRTPVDL 137
G+L + +LL AS ++D + TP+ L
Sbjct: 149 KGNLKMVHILLFYKASTNIQDTEGNTPLHL 178
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Query: 66 TPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRALHFGHLAVASVLLQSGASIT 125
T LH A IV LL G + +D ++GWS LH A G + LL GA +
Sbjct: 42 TALHWACSAGHTEIVEFLLQLGVPVNDKD-DAGWSPLHIAASAGRDEIVKALLVKGAHVN 100
Query: 126 LEDCKSRTPV 135
+ TP+
Sbjct: 101 AVNQNGCTPL 110
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 57.0 bits (136), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 62/123 (50%), Gaps = 6/123 (4%)
Query: 15 LQSPARKSSLGGVQK--DLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAI 72
L P+ K+ L G K +L A R G + E +ALL N ++ + TPLH A
Sbjct: 10 LADPSAKAVLTGEYKKDELLEAARSG---NEEKLMALLTPLNVNCHASDGRKSTPLHLAA 66
Query: 73 WRNQVPIVRRLLAAGADPDARDGESGWSSLHRALHFGHLAVASVLLQSGASITLEDCKSR 132
N+V IV+ LL GAD A+D + G LH A +GH V +LL+ GA + D
Sbjct: 67 GYNRVRIVQLLLQHGADVHAKD-KGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQF 125
Query: 133 TPV 135
TP+
Sbjct: 126 TPL 128
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 68/150 (45%), Gaps = 17/150 (11%)
Query: 13 QTLQSPARKSSLGGVQKDLCLAV--------REGSLADVESAL--------ALLKKNGGN 56
+L AR++ L V+K L L + E +L ++L LL + G N
Sbjct: 180 HSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGAN 239
Query: 57 INSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRALHFGHLAVASV 116
+N +N +TPLH A R ++ L GA +A D G ++LHRA GHL +
Sbjct: 240 VNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDS-LGQTALHRAALAGHLQTCRL 298
Query: 117 LLQSGASITLEDCKSRTPVDLLSGPVLQVV 146
LL G+ ++ + T + + V Q++
Sbjct: 299 LLSYGSDPSIISLQGFTAAQMGNEAVQQIL 328
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 28/42 (66%)
Query: 49 LLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADP 90
LL K+G +N+ +++ TPLH A +N+V + LL+ GADP
Sbjct: 109 LLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADP 150
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 56.2 bits (134), Expect = 8e-08, Method: Composition-based stats.
Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 7/88 (7%)
Query: 48 ALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRALH 107
A++ + GG++NS TPLH A + + +V +L+ GADP DGE G S +H A
Sbjct: 66 AIVDQLGGDLNS------TPLHWATRQGHLSMVVQLMKYGADPSLIDGE-GCSCIHLAAQ 118
Query: 108 FGHLAVASVLLQSGASITLEDCKSRTPV 135
FGH ++ + L+ G + + D TP+
Sbjct: 119 FGHTSIVAYLIAKGQDVDMMDQNGMTPL 146
Score = 40.4 bits (93), Expect = 0.006, Method: Composition-based stats.
Identities = 28/94 (29%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
Query: 45 SALALLKKNGGNINSRNIFGLTPLHSAIWR-NQVPIVRRLLAAGADPDARDGESGWSSLH 103
S +A L G +++ + G+TPL A +R + V R LL + D ++LH
Sbjct: 123 SIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALH 182
Query: 104 RALHFGHLAVASVLLQSGASITLEDCKSRTPVDL 137
A+ G+ V S+LL++GA++ ++ K + +DL
Sbjct: 183 WAVLAGNTTVISLLLEAGANVDAQNIKGESALDL 216
Score = 35.8 bits (81), Expect = 0.13, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 35/64 (54%)
Query: 65 LTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRALHFGHLAVASVLLQSGASI 124
+T LH A N++ +V+ ++ GA D G+ + LH A GHL++ L++ GA
Sbjct: 43 VTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADP 102
Query: 125 TLED 128
+L D
Sbjct: 103 SLID 106
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 55.5 bits (132), Expect = 2e-07, Method: Composition-based stats.
Identities = 42/115 (36%), Positives = 59/115 (51%), Gaps = 6/115 (5%)
Query: 23 SLGGVQKDLCLAVREGSLADVESALALLKKNGGNINSRNIFGL--TPLHSAIWRNQVPIV 80
SLG + D L + DVE+ L ++N R+I G TPLH A N+V +V
Sbjct: 6 SLGNSEADRQL-LEAAKAGDVETVKKLCTVQ--SVNCRDIEGRQSTPLHFAAGYNRVSVV 62
Query: 81 RRLLAAGADPDARDGESGWSSLHRALHFGHLAVASVLLQSGASITLEDCKSRTPV 135
LL GAD A+D + G LH A +GH VA +L++ GA + + D TP+
Sbjct: 63 EYLLQHGADVHAKD-KGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPL 116
Score = 37.0 bits (84), Expect = 0.055, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 49 LLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDA--RDGES 97
LL K+G +N +++ TPLH A + + I + LL GADP RDG +
Sbjct: 97 LLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNT 147
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 54.3 bits (129), Expect = 4e-07, Method: Composition-based stats.
Identities = 33/82 (40%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 56 NINSRNIFGL--TPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRALHFGHLAV 113
++N R+I G TPLH A N+V +V LL GAD A+D + G LH A +GH V
Sbjct: 32 SVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKD-KGGLVPLHNACSYGHYEV 90
Query: 114 ASVLLQSGASITLEDCKSRTPV 135
A +L++ GA + + D TP+
Sbjct: 91 AELLVKHGAVVNVADLWKFTPL 112
Score = 37.4 bits (85), Expect = 0.047, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 49 LLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDA--RDGES 97
LL K+G +N +++ TPLH A + + I + LL GADP RDG +
Sbjct: 93 LLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNT 143
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 53.9 bits (128), Expect = 5e-07, Method: Composition-based stats.
Identities = 33/82 (40%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 56 NINSRNIFGL--TPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRALHFGHLAV 113
++N R+I G TPLH A N+V +V LL GAD A+D + G LH A +GH V
Sbjct: 34 SVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKD-KGGLVPLHNACSYGHYEV 92
Query: 114 ASVLLQSGASITLEDCKSRTPV 135
A +L++ GA + + D TP+
Sbjct: 93 AELLVKHGAVVNVADLWKFTPL 114
Score = 37.0 bits (84), Expect = 0.055, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 49 LLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDA--RDGES 97
LL K+G +N +++ TPLH A + + I + LL GADP RDG +
Sbjct: 95 LLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNT 145
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 8/102 (7%)
Query: 64 GLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRALHFGHLAVASVLLQSGAS 123
G T LH A + +P V LL G+DP+ +D +GW+ LH A + GHL V +LLQ A
Sbjct: 10 GETLLHIASIKGDIPSVEYLLQNGSDPNVKD-HAGWTPLHEACNHGHLKVVELLLQHKAL 68
Query: 124 ITLEDCKSRTPVDLLSGPVLQVVGSGYNSVATEVFSWGSGAN 165
+ ++ +P+ +G+ + + S+G+ N
Sbjct: 69 VNTTGYQNDSPLH-------DAAKNGHVDIVKLLLSYGASRN 103
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 48/106 (45%), Gaps = 5/106 (4%)
Query: 31 LCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADP 90
L +A +G + VE L +NG + N ++ G TPLH A + +V LL A
Sbjct: 14 LHIASIKGDIPSVEYLL----QNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALV 69
Query: 91 DARDGESGWSSLHRALHFGHLAVASVLLQSGASITLEDCKSRTPVD 136
+ G S LH A GH+ + +LL GAS + PVD
Sbjct: 70 NTT-GYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVD 114
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 53.1 bits (126), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 69/147 (46%), Gaps = 13/147 (8%)
Query: 19 ARKSSLGGVQKDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVP 78
A S+ GV L LA +EG V AL L K+ GN+ +++ GLTPLH VP
Sbjct: 238 ANAESVQGVTP-LHLAAQEGHAEMV--ALLLSKQANGNLGNKS--GLTPLHLVAQEGHVP 292
Query: 79 IVRRLLAAGADPDARDGESGWSSLHRALHFGHLAVASVLLQSGASITLEDCKSRTPVDLL 138
+ L+ G DA G++ LH A H+G++ + LLQ A D ++T L
Sbjct: 293 VADVLIKHGVMVDATT-RMGYTPLHVASHYGNIKLVKFLLQHQA-----DVNAKT--KLG 344
Query: 139 SGPVLQVVGSGYNSVATEVFSWGSGAN 165
P+ Q G+ + T + G+ N
Sbjct: 345 YSPLHQAAQQGHTDIVTLLLKNGASPN 371
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 49 LLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRALHF 108
LL + + N+ GLTPLH A+ N + IV+ LL G P + +G++ LH A
Sbjct: 164 LLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHS-PAWNGYTPLHIAAKQ 222
Query: 109 GHLAVASVLLQSGASITLEDCKSRTPVDL 137
+ VA LLQ G S E + TP+ L
Sbjct: 223 NQVEVARSLLQYGGSANAESVQGVTPLHL 251
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 48/93 (51%), Gaps = 5/93 (5%)
Query: 31 LCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADP 90
L +A REG VE+ LALL+K G TPLH A +V + LL A P
Sbjct: 117 LHIAAREG---HVETVLALLEKEASQA-CMTKKGFTPLHVAAKYGKVRVAELLLERDAHP 172
Query: 91 DARDGESGWSSLHRALHFGHLAVASVLLQSGAS 123
+A G++G + LH A+H +L + +LL G S
Sbjct: 173 NAA-GKNGLTPLHVAVHHNNLDIVKLLLPRGGS 204
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 65 LTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRALHFGHLAVASVLLQSGASI 124
LTPLH A + +PIV+ LL GA P+ + + + LH A GH VA LLQ+ A +
Sbjct: 15 LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKV-ETPLHMAARAGHTEVAKYLLQNKAKV 73
Query: 125 TLEDCKSRTPV 135
+ +TP+
Sbjct: 74 NAKAKDDQTPL 84
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 52/97 (53%), Gaps = 2/97 (2%)
Query: 43 VESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSL 102
VE A +LL+ GG+ N+ ++ G+TPLH A +V LL+ A+ + + +SG + L
Sbjct: 225 VEVARSLLQY-GGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGN-KSGLTPL 282
Query: 103 HRALHFGHLAVASVLLQSGASITLEDCKSRTPVDLLS 139
H GH+ VA VL++ G + TP+ + S
Sbjct: 283 HLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVAS 319
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 50/111 (45%), Gaps = 5/111 (4%)
Query: 27 VQKDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAA 86
V+ L +A R G E A LL+ N +N++ TPLH A +V+ LL
Sbjct: 47 VETPLHMAARAG---HTEVAKYLLQ-NKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLEN 102
Query: 87 GADPDARDGESGWSSLHRALHFGHLAVASVLLQSGASITLEDCKSRTPVDL 137
A+P+ +G + LH A GH+ LL+ AS K TP+ +
Sbjct: 103 NANPNLAT-TAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHV 152
Score = 30.8 bits (68), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 99 WSSLHRALHFGHLAVASVLLQSGASITLEDCKSRTPVDL 137
+ LH A GHL + LLQ GAS + + K TP+ +
Sbjct: 15 LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHM 53
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 49 LLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRALHF 108
LL K+G N +RN PLH A + +V+ LL + A P+ +D SG + L A
Sbjct: 104 LLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKD-LSGNTPLIYACSG 162
Query: 109 GHLAVASVLLQSGASITLEDCKSRTPV 135
GH + ++LLQ GASI + K T +
Sbjct: 163 GHHELVALLLQHGASINASNNKGNTAL 189
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 60/140 (42%), Gaps = 13/140 (9%)
Query: 54 GGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRALHFGHLAV 113
G N+ S++ G +PLH A + ++ LL GA+ AR+ + LH A GH V
Sbjct: 78 GVNVTSQD--GSSPLHVAALHGRADLIPLLLKHGANAGARNADQAV-PLHLACQQGHFQV 134
Query: 114 ASVLLQSGASITLEDCKSRTPVDLLSGPVLQVVGSGYNSVATEVFSWGSGANYQLGTGNA 173
LL S A +D T P++ G++ + + G+ N GN
Sbjct: 135 VKCLLDSNAKPNKKDLSGNT-------PLIYACSGGHHELVALLLQHGASINASNNKGNT 187
Query: 174 HLQKLPCKVDSLHGFVIKLI 193
L + V H FV++L+
Sbjct: 188 ALHE---AVIEKHVFVVELL 204
Score = 33.9 bits (76), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 47 LALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGA 88
+ALL ++G +IN+ N G T LH A+ V +V LL GA
Sbjct: 168 VALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGA 209
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 47.4 bits (111), Expect = 5e-05, Method: Composition-based stats.
Identities = 39/113 (34%), Positives = 55/113 (48%), Gaps = 5/113 (4%)
Query: 34 AVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDAR 93
A REG A VE +L G IN N TPLH A IV++LL AD +A
Sbjct: 41 ACREGRSAVVE----MLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAV 96
Query: 94 DGESGWSSLHRALHFGHLAVASVLLQSGASITLEDCKSRTPVDLLSGPVLQVV 146
+ E G LH A +G VA L+ +GA +++ + PVD P+ +++
Sbjct: 97 N-EHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELL 148
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 47.4 bits (111), Expect = 5e-05, Method: Composition-based stats.
Identities = 39/113 (34%), Positives = 55/113 (48%), Gaps = 5/113 (4%)
Query: 34 AVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDAR 93
A REG A VE +L G IN N TPLH A IV++LL AD +A
Sbjct: 46 ACREGRSAVVE----MLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAV 101
Query: 94 DGESGWSSLHRALHFGHLAVASVLLQSGASITLEDCKSRTPVDLLSGPVLQVV 146
+ E G LH A +G VA L+ +GA +++ + PVD P+ +++
Sbjct: 102 N-EHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELL 153
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 46.2 bits (108), Expect = 1e-04, Method: Composition-based stats.
Identities = 29/64 (45%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 57 INSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRALHFGHLAVASV 116
+N +N TPLH A+ NQ I LL AG DP+ RD G + LH A G LA V
Sbjct: 35 LNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFR-GNTPLHLACEQGCLASVGV 93
Query: 117 LLQS 120
L QS
Sbjct: 94 LTQS 97
Score = 37.4 bits (85), Expect = 0.046, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 44/84 (52%)
Query: 57 INSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRALHFGHLAVASV 116
+ + N G T LH A + IV L++ GAD +A++ +G ++LH A+ + + S+
Sbjct: 107 LKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSL 166
Query: 117 LLQSGASITLEDCKSRTPVDLLSG 140
LL+ GA + + +P L G
Sbjct: 167 LLKCGADVNRVTYQGYSPYQLTWG 190
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 57/95 (60%), Gaps = 2/95 (2%)
Query: 42 DVESALALLKKNGGNINSRNI-FGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWS 100
+ + + LL + G +I++ +I G +PL A+ N + +V+ LL GA+ +A+ SG S
Sbjct: 127 ECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQ-MYSGSS 185
Query: 101 SLHRALHFGHLAVASVLLQSGASITLEDCKSRTPV 135
+LH A G L + L++SGA +L++C + TP+
Sbjct: 186 ALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPL 220
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 40/69 (57%)
Query: 56 NINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRALHFGHLAVAS 115
++ +RN GLT LH A+ V+ LL GAD DA D +SG S L A+ L++
Sbjct: 108 DLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQ 167
Query: 116 VLLQSGASI 124
+LLQ GA++
Sbjct: 168 LLLQHGANV 176
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 73/182 (40%), Gaps = 42/182 (23%)
Query: 31 LCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADP 90
L +AV +G+L V + L ++ G ++ N TPLH A+ +VR L+ AGA P
Sbjct: 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASP 72
Query: 91 DA--RDGES----------------------------------GWSSLHRALHFGHLAVA 114
A R G++ G ++LH A++
Sbjct: 73 MALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETV 132
Query: 115 SVLLQSGASITLEDCKSRTPVDLLSGPVLQVVGSGYNSVATEVFSWGSGANYQLGTGNAH 174
+LL+ GA I D KS P++ V + S+ + G+ N Q+ +G++
Sbjct: 133 QLLLERGADIDAVDIKSG------RSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSA 186
Query: 175 LQ 176
L
Sbjct: 187 LH 188
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 35/56 (62%), Gaps = 4/56 (7%)
Query: 34 AVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGAD 89
AV SL+ V+ LL ++G N+N++ G + LHSA R +P+VR L+ +GAD
Sbjct: 157 AVENNSLSMVQ----LLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGAD 208
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 45.8 bits (107), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 80 VRRLLAAGADPDARDGESGWSSLHRALHFGHLAVASVLLQSGASITLEDCKSRTPVDL 137
VR L+A GAD +A+D + G++ LH A GHL + VLL++GA + +D +T D+
Sbjct: 18 VRILMANGADVNAKD-KDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDI 74
Score = 43.1 bits (100), Expect = 9e-04, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 37/65 (56%)
Query: 30 DLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGAD 89
DL + E + A + + +L NG ++N+++ G TPLH A + IV LL AGAD
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 60
Query: 90 PDARD 94
+A+D
Sbjct: 61 VNAQD 65
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 45.8 bits (107), Expect = 1e-04, Method: Composition-based stats.
Identities = 29/64 (45%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 57 INSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRALHFGHLAVASV 116
+N +N TPLH A+ NQ I LL AG DP+ RD G + LH A G LA V
Sbjct: 38 LNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFR-GNTPLHLACEQGCLASVGV 96
Query: 117 LLQS 120
L QS
Sbjct: 97 LTQS 100
Score = 37.0 bits (84), Expect = 0.052, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 44/84 (52%)
Query: 57 INSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRALHFGHLAVASV 116
+ + N G T LH A + IV L++ GAD +A++ +G ++LH A+ + + S+
Sbjct: 110 LKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSL 169
Query: 117 LLQSGASITLEDCKSRTPVDLLSG 140
LL+ GA + + +P L G
Sbjct: 170 LLKCGADVNRVTYQGYSPYQLTWG 193
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 64 GLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRALHFGHLAVASVLLQSGAS 123
G TPLH+A V++LL+ GAD +AR + G + LH A GH + +LL GA
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLSKGADVNARS-KDGNTPLHLAAKNGHAEIVKLLLAKGAD 67
Query: 124 ITLEDCKSRTPVDL 137
+ TP L
Sbjct: 68 VNARSKDGNTPEHL 81
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 47/95 (49%), Gaps = 5/95 (5%)
Query: 31 LCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADP 90
L A + G +V+ L+ G ++N+R+ G TPLH A IV+ LLA GAD
Sbjct: 13 LHNAAKNGHAEEVKKLLS----KGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADV 68
Query: 91 DARDGESGWSSLHRALHFGHLAVASVLLQSGASIT 125
+AR + G + H A GH + +L GA +
Sbjct: 69 NARS-KDGNTPEHLAKKNGHHEIVKLLDAKGADVN 102
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 31 LCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADP 90
L LA + G V+ LL G ++N+R+ G TP H A IV+ L A GAD
Sbjct: 46 LHLAAKNGHAEIVK----LLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADV 101
Query: 91 DAR 93
+AR
Sbjct: 102 NAR 104
>pdb|3QHY|B Chain B, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|A Chain A, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|B Chain B, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|C Chain C, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|D Chain D, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|E Chain E, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|F Chain F, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
Length = 282
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 78/297 (26%), Positives = 116/297 (39%), Gaps = 79/297 (26%)
Query: 154 ATEVFSWGSGANYQLGTGNAHLQKLPCKVDSLHGFVIKLISAAKFHSVAVTSLGEVYTWG 213
AT V +WG ++ T +P + S + I+ FH +A+ G+V WG
Sbjct: 1 ATSVVAWGGNNDWGEAT-------VPAEAQSG----VDAIAGGYFHGLALKG-GKVLGWG 48
Query: 214 YGRGGRLGHPDFDIHSGQAAVITPRRVTSGLGSRRVKTIAAAKHHTVLATEGGEVFTWGS 273
G+L P SG V IAA +H+ LA + GEV WG
Sbjct: 49 ANLNGQL--------------TMPAATQSG-----VDAIAAGNYHS-LALKDGEVIAWGG 88
Query: 274 NREGQL-----GYTSVDTQPTPRRVS-SLK-LKIIA------------------VAAANK 308
N +GQ + VD S +LK K+IA V A +
Sbjct: 89 NEDGQTTVPAEARSGVDAIAAGAWASYALKDGKVIAWGDDSDGQTTVPAEAQSGVTALDG 148
Query: 309 --HTAVVSESGEVFTWGCNREGQLGYGTSNSASNYTPRVVESLKGKDLVGVAAAKYHTIV 366
+TA+ ++G V WG N GQ T E+ G D VA +H++
Sbjct: 149 GVYTALAVKNGGVIAWGDNYFGQ------------TTVPAEAQSGVD--DVAGGIFHSLA 194
Query: 367 LGADGERVIVARNLKKSGSTPLKFHRKIKLHVVSIAAGMVHSTALTEDGALFYWASS 423
L DG+ + N K + P + + +IA+G +S AL ++G + W SS
Sbjct: 195 L-KDGKVIAWGDNRYKQTTVPTEALSGVS----AIASGEWYSLAL-KNGKVIAWGSS 245
Score = 34.7 bits (78), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 76/195 (38%), Gaps = 34/195 (17%)
Query: 268 VFTWGSNREGQLGYTSVDTQPTPRRVSSLKLKIIAVAAANKHTAVVSESGEVFTWGCNRE 327
V WG N + G +V P S + A+A H + + G+V WG N
Sbjct: 4 VVAWGGNND--WGEATV-----PAEAQS---GVDAIAGGYFH-GLALKGGKVLGWGANLN 52
Query: 328 GQLGYGTSNSASNYTPRVVESLKGKDLVGVAAAKYHTIVLGADGERVIVARNLKKSGSTP 387
GQL P +S G D +AA YH++ L DGE + N + P
Sbjct: 53 GQL----------TMPAATQS--GVDA--IAAGNYHSLAL-KDGEVIAWGGNEDGQTTVP 97
Query: 388 LKFHRKIKLHVVSIAAGMVHSTALTEDGALFYWASSDPDLRCQQLYSMCGRNVVSISAGK 447
+ + +IAAG S AL +DG + W D D + + + V ++ G
Sbjct: 98 AEARSGVD----AIAAGAWASYAL-KDGKVIAW-GDDSDGQT-TVPAEAQSGVTALDGGV 150
Query: 448 YWTAAVTATGDVYMW 462
Y TA G V W
Sbjct: 151 Y-TALAVKNGGVIAW 164
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 83/221 (37%), Gaps = 50/221 (22%)
Query: 129 CKSRTPVDLLSGPVLQVVGSGYNSVATEVFSWGSGANYQLGTGNAHLQKLPCKVDSLHGF 188
++++ VD ++G G +V WG+ N QL +P S
Sbjct: 20 AEAQSGVDAIAGGYFH----GLALKGGKVLGWGANLNGQL--------TMPAATQSG--- 64
Query: 189 VIKLISAAKFHSVAVTSLGEVYTWGYGRGGRLGHPDFDIHSGQAAVITPRRVTSGLGSRR 248
+ I+A +HS+A+ GEV WG G+ P + SG A+ + L +
Sbjct: 65 -VDAIAAGNYHSLALKD-GEVIAWGGNEDGQTTVP-AEARSGVDAIAAGAWASYALKDGK 121
Query: 249 V----------KTIAAAKH----------HTVLATEGGEVFTWGSNREGQLGYTSVDTQP 288
V T+ A +T LA + G V WG N GQ T+V
Sbjct: 122 VIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALAVKNGGVIAWGDNYFGQ---TTV---- 174
Query: 289 TPRRVSSLKLKIIAVAAANKHTAVVSESGEVFTWGCNREGQ 329
P S + VA H+ + + G+V WG NR Q
Sbjct: 175 -PAEAQS---GVDDVAGGIFHSLALKD-GKVIAWGDNRYKQ 210
>pdb|1JTD|B Chain B, Crystal Structure Of Beta-Lactamase Inhibitor Protein-Ii
In Complex With Tem-1 Beta-Lactamase
Length = 273
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 78/297 (26%), Positives = 115/297 (38%), Gaps = 79/297 (26%)
Query: 154 ATEVFSWGSGANYQLGTGNAHLQKLPCKVDSLHGFVIKLISAAKFHSVAVTSLGEVYTWG 213
AT V +WG ++ T +P + S + I+ FH +A+ G+V WG
Sbjct: 3 ATSVVAWGGNNDWGEAT-------VPAEAQSG----VDAIAGGYFHGLALKG-GKVLGWG 50
Query: 214 YGRGGRLGHPDFDIHSGQAAVITPRRVTSGLGSRRVKTIAAAKHHTVLATEGGEVFTWGS 273
G+L P SG V IAA +H+ LA + GEV WG
Sbjct: 51 ANLNGQL--------------TMPAATQSG-----VDAIAAGNYHS-LALKDGEVIAWGG 90
Query: 274 NREGQL-----GYTSVDTQPTPRRVS-SLK-LKIIA------------------VAA--A 306
N +GQ + VD S +LK K+IA V A
Sbjct: 91 NEDGQTTVPAEARSGVDAIAAGAWASYALKDGKVIAWGDDSDGQTTVPAEAQSGVTALDG 150
Query: 307 NKHTAVVSESGEVFTWGCNREGQLGYGTSNSASNYTPRVVESLKGKDLVGVAAAKYHTIV 366
+TA+ ++G V WG N GQ T E+ G D VA +H++
Sbjct: 151 GVYTALAVKNGGVIAWGDNYFGQ------------TTVPAEAQSGVD--DVAGGIFHSLA 196
Query: 367 LGADGERVIVARNLKKSGSTPLKFHRKIKLHVVSIAAGMVHSTALTEDGALFYWASS 423
L DG+ + N K + P + + +IA+G +S AL ++G + W SS
Sbjct: 197 L-KDGKVIAWGDNRYKQTTVPTEALSGVS----AIASGEWYSLAL-KNGKVIAWGSS 247
Score = 34.3 bits (77), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 76/195 (38%), Gaps = 34/195 (17%)
Query: 268 VFTWGSNREGQLGYTSVDTQPTPRRVSSLKLKIIAVAAANKHTAVVSESGEVFTWGCNRE 327
V WG N + G +V P S + A+A H + + G+V WG N
Sbjct: 6 VVAWGGNND--WGEATV-----PAEAQS---GVDAIAGGYFH-GLALKGGKVLGWGANLN 54
Query: 328 GQLGYGTSNSASNYTPRVVESLKGKDLVGVAAAKYHTIVLGADGERVIVARNLKKSGSTP 387
GQL P +S G D +AA YH++ L DGE + N + P
Sbjct: 55 GQL----------TMPAATQS--GVDA--IAAGNYHSLAL-KDGEVIAWGGNEDGQTTVP 99
Query: 388 LKFHRKIKLHVVSIAAGMVHSTALTEDGALFYWASSDPDLRCQQLYSMCGRNVVSISAGK 447
+ + +IAAG S AL +DG + W D D + + + V ++ G
Sbjct: 100 AEARSGVD----AIAAGAWASYAL-KDGKVIAW-GDDSDGQT-TVPAEAQSGVTALDGGV 152
Query: 448 YWTAAVTATGDVYMW 462
Y TA G V W
Sbjct: 153 Y-TALAVKNGGVIAW 166
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 83/221 (37%), Gaps = 50/221 (22%)
Query: 129 CKSRTPVDLLSGPVLQVVGSGYNSVATEVFSWGSGANYQLGTGNAHLQKLPCKVDSLHGF 188
++++ VD ++G G +V WG+ N QL +P S
Sbjct: 22 AEAQSGVDAIAGGYFH----GLALKGGKVLGWGANLNGQL--------TMPAATQSG--- 66
Query: 189 VIKLISAAKFHSVAVTSLGEVYTWGYGRGGRLGHPDFDIHSGQAAVITPRRVTSGLGSRR 248
+ I+A +HS+A+ GEV WG G+ P + SG A+ + L +
Sbjct: 67 -VDAIAAGNYHSLALKD-GEVIAWGGNEDGQTTVP-AEARSGVDAIAAGAWASYALKDGK 123
Query: 249 V----------KTIAAAKH----------HTVLATEGGEVFTWGSNREGQLGYTSVDTQP 288
V T+ A +T LA + G V WG N GQ T+V
Sbjct: 124 VIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALAVKNGGVIAWGDNYFGQ---TTV---- 176
Query: 289 TPRRVSSLKLKIIAVAAANKHTAVVSESGEVFTWGCNREGQ 329
P S + VA H+ + + G+V WG NR Q
Sbjct: 177 -PAEAQS---GVDDVAGGIFHSLALKD-GKVIAWGDNRYKQ 212
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 80 VRRLLAAGADPDARDGESGWSSLHRALHFGHLAVASVLLQSGASITLEDCKSRTPVDL 137
VR L+A GAD A+D ++G + LH A GHL V +LL++GA + +D +T D+
Sbjct: 40 VRILMANGADVAAKD-KNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDI 96
Score = 38.5 bits (88), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 52/98 (53%), Gaps = 4/98 (4%)
Query: 20 RKSSLGGVQKDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPI 79
R S +G DL + E + A + + +L NG ++ +++ G TPLH A + +
Sbjct: 16 RGSHMG---SDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEV 72
Query: 80 VRRLLAAGADPDARDGESGWSSLHRALHFGHLAVASVL 117
V+ LL AGAD A+D + G ++ ++ G+ +A +L
Sbjct: 73 VKLLLEAGADVXAQD-KFGKTAFDISIDNGNEDLAEIL 109
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 40/79 (50%)
Query: 57 INSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRALHFGHLAVASV 116
+ + N G TPLH A+ +VR L AGAD + + G + LH A+ +V +
Sbjct: 151 LEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLEL 210
Query: 117 LLQSGASITLEDCKSRTPV 135
LL++GA T RTP+
Sbjct: 211 LLKAGADPTARMYGGRTPL 229
Score = 37.0 bits (84), Expect = 0.064, Method: Composition-based stats.
Identities = 24/55 (43%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 41 ADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDG 95
A S L LL K G + +R G TPL SA+ R PI+ RLL A P+ DG
Sbjct: 202 AQAASVLELLLKAGADPTARMYGGRTPLGSALLRPN-PILARLLRAHGAPEPEDG 255
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 40/79 (50%)
Query: 57 INSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRALHFGHLAVASV 116
+ + N G TPLH A+ +VR L AGAD + + G + LH A+ +V +
Sbjct: 151 LEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLEL 210
Query: 117 LLQSGASITLEDCKSRTPV 135
LL++GA T RTP+
Sbjct: 211 LLKAGADPTARMYGGRTPL 229
Score = 37.0 bits (84), Expect = 0.064, Method: Composition-based stats.
Identities = 24/55 (43%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 41 ADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDG 95
A S L LL K G + +R G TPL SA+ R PI+ RLL A P+ DG
Sbjct: 202 AQAASVLELLLKAGADPTARMYGGRTPLGSALLRPN-PILARLLRAHGAPEPEDG 255
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 60/114 (52%), Gaps = 10/114 (8%)
Query: 9 HGQ----KQTLQSPARKSSLG-GVQKDLCLAVREGSLADVESALALLKKNGGNINSRNIF 63
HGQ + LQ+ A LG G + L LA +G D+ + +L G ++N +
Sbjct: 62 HGQIAVVEFLLQNGADPQLLGKGRESALSLACSKG-YTDI---VKMLLDCGVDVNEYDWN 117
Query: 64 GLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRALHFGHLAVASVL 117
G TPL A+ N V V+ LL +GADP + +SG++S+ A+ G+ +V V+
Sbjct: 118 GGTPLLYAVHGNHVKCVKMLLESGADPTI-ETDSGYNSMDLAVALGYRSVQQVI 170
Score = 37.4 bits (85), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Query: 57 INSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRALHFGHLAVASV 116
IN + G TPL A Q+ +V LL GADP G+ S+L A G+ + +
Sbjct: 45 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLL-GKGRESALSLACSKGYTDIVKM 103
Query: 117 LLQSGASITLEDCKSRTPV 135
LL G + D TP+
Sbjct: 104 LLDCGVDVNEYDWNGGTPL 122
Score = 35.0 bits (79), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 8/75 (10%)
Query: 79 IVRRLLAAGADPDARDGESGWSSLHRALHFGHLAVASVLLQSGASITLEDCKSRTPVDLL 138
IV+ LL G D + D G + L A+H H+ +LL+SGA T+E +DL
Sbjct: 100 IVKMLLDCGVDVNEYDWNGG-TPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDL- 157
Query: 139 SGPVLQVVGSGYNSV 153
V GY SV
Sbjct: 158 ------AVALGYRSV 166
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 80 VRRLLAAGADPDARDGESGWSSLHRALHFGHLAVASVLLQSGASITLEDCKSRTPVDL 137
VR L+A GAD A+D ++G + LH A GHL V +LL++GA + +D +T D+
Sbjct: 22 VRILMANGADVAAKD-KNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKTAFDI 78
Score = 39.7 bits (91), Expect = 0.009, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 37/65 (56%)
Query: 30 DLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGAD 89
DL + E + A + + +L NG ++ +++ G TPLH A + +V+ LL AGAD
Sbjct: 5 DLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD 64
Query: 90 PDARD 94
+A+D
Sbjct: 65 VNAQD 69
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 59/114 (51%), Gaps = 10/114 (8%)
Query: 9 HGQ----KQTLQSPARKSSLG-GVQKDLCLAVREGSLADVESALALLKKNGGNINSRNIF 63
HGQ + LQ+ A LG G + L LA +G V+ +L G ++N +
Sbjct: 44 HGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVK----MLLDCGVDVNEYDWN 99
Query: 64 GLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRALHFGHLAVASVL 117
G TPL A+ N V V+ LL +GADP + +SG++S+ A+ G+ +V V+
Sbjct: 100 GGTPLLYAVHGNHVKCVKMLLESGADP-TIETDSGYNSMDLAVALGYRSVQQVI 152
Score = 37.4 bits (85), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Query: 57 INSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRALHFGHLAVASV 116
IN + G TPL A Q+ +V LL GADP G+ S+L A G+ + +
Sbjct: 27 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLL-GKGRESALSLACSKGYTDIVKM 85
Query: 117 LLQSGASITLEDCKSRTPV 135
LL G + D TP+
Sbjct: 86 LLDCGVDVNEYDWNGGTPL 104
Score = 35.0 bits (79), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 8/75 (10%)
Query: 79 IVRRLLAAGADPDARDGESGWSSLHRALHFGHLAVASVLLQSGASITLEDCKSRTPVDLL 138
IV+ LL G D + D G + L A+H H+ +LL+SGA T+E +DL
Sbjct: 82 IVKMLLDCGVDVNEYDWNGG-TPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDL- 139
Query: 139 SGPVLQVVGSGYNSV 153
V GY SV
Sbjct: 140 ------AVALGYRSV 148
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 59/114 (51%), Gaps = 10/114 (8%)
Query: 9 HGQ----KQTLQSPARKSSLG-GVQKDLCLAVREGSLADVESALALLKKNGGNINSRNIF 63
HGQ + LQ+ A LG G + L LA +G V+ +L G ++N +
Sbjct: 46 HGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVK----MLLDCGVDVNEYDWN 101
Query: 64 GLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRALHFGHLAVASVL 117
G TPL A+ N V V+ LL +GADP + +SG++S+ A+ G+ +V V+
Sbjct: 102 GGTPLLYAVHGNHVKCVKMLLESGADP-TIETDSGYNSMDLAVALGYRSVQQVI 154
Score = 37.4 bits (85), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Query: 57 INSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRALHFGHLAVASV 116
IN + G TPL A Q+ +V LL GADP G+ S+L A G+ + +
Sbjct: 29 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLL-GKGRESALSLACSKGYTDIVKM 87
Query: 117 LLQSGASITLEDCKSRTPV 135
LL G + D TP+
Sbjct: 88 LLDCGVDVNEYDWNGGTPL 106
Score = 35.0 bits (79), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 8/75 (10%)
Query: 79 IVRRLLAAGADPDARDGESGWSSLHRALHFGHLAVASVLLQSGASITLEDCKSRTPVDLL 138
IV+ LL G D + D G + L A+H H+ +LL+SGA T+E +DL
Sbjct: 84 IVKMLLDCGVDVNEYDWNGG-TPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDL- 141
Query: 139 SGPVLQVVGSGYNSV 153
V GY SV
Sbjct: 142 ------AVALGYRSV 150
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 64 GLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRALHFGHLAVASVLLQSGAS 123
G+T LH+A+ IV+ L+ G + +A D + GW+ LH A ++ V L++SGA+
Sbjct: 70 GITALHNAVCAGHTEIVKFLVQFGVNVNAADSD-GWTPLHCAASCNNVQVCKFLVESGAA 128
Query: 124 I 124
+
Sbjct: 129 V 129
Score = 33.1 bits (74), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 76 QVPIVRRLLAAGADPDARDGESGWSSLHRALHFGHLAVASVLLQSGASITLEDCKSRTPV 135
+ +V+R++ DP + E G ++LH A+ GH + L+Q G ++ D TP+
Sbjct: 49 EFDLVQRIIYEVDDPSLPNDE-GITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPL 107
>pdb|1BI7|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structure Of The Cdk6-P16ink4a Tumor Suppressor
Complex
Length = 156
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 53/120 (44%), Gaps = 5/120 (4%)
Query: 18 PARKSSLGGVQKDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQV 77
PA SS+ L A G + +V + L + G N N+ N +G P+ +
Sbjct: 3 PAAGSSMEPSADWLATAAARGRVEEVRALL----EAGANPNAPNSYGRRPIQ-VMMMGSA 57
Query: 78 PIVRRLLAAGADPDARDGESGWSSLHRALHFGHLAVASVLLQSGASITLEDCKSRTPVDL 137
+ LL GA+P+ D + +H A G L VL ++GA + + D R PVDL
Sbjct: 58 RVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDL 117
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 64 GLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRALHFGHLAVASVLLQSGAS 123
G+T LH+A+ IV+ L+ G + +A D + GW+ LH A ++ V L++SGA+
Sbjct: 70 GITALHNAVCAGHTEIVKFLVQFGVNVNAADSD-GWTPLHCAASCNNVQVCKFLVESGAA 128
Query: 124 I 124
+
Sbjct: 129 V 129
Score = 33.1 bits (74), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 79 IVRRLLAAGADPDARDGESGWSSLHRALHFGHLAVASVLLQSGASITLEDCKSRTPV 135
+V+R++ DP + E G ++LH A+ GH + L+Q G ++ D TP+
Sbjct: 52 LVQRIIYEVDDPSLPNDE-GITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPL 107
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 63 FGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRALHFGHLAVASVLLQSGA 122
FG T L N I RRLL GA+PD +D +G++ +H A G L LL++ A
Sbjct: 37 FGRTALQVMKLGNP-EIARRLLLRGANPDLKD-RTGFAVIHDAARAGFLDTLQTLLENQA 94
Query: 123 SITLEDCKSRTPVDL 137
+ +ED + P+ L
Sbjct: 95 DVNIEDNEGNLPLHL 109
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 56/97 (57%), Gaps = 1/97 (1%)
Query: 43 VESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSL 102
+E+A+ L +N + ++I G T L A+ N++ I +LL+ G++ + +D SG + L
Sbjct: 47 MENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDF-SGKTPL 105
Query: 103 HRALHFGHLAVASVLLQSGASITLEDCKSRTPVDLLS 139
++ FG+ ++ LL+ GA++ + + TP+ + S
Sbjct: 106 MWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVAS 142
Score = 40.0 bits (92), Expect = 0.006, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 49 LLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRALHF 108
L ++G N+N RN+ G TPL A + IV++LL GAD ARD +G ++ A F
Sbjct: 119 FLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARD-LTGLTAEASARIF 177
Query: 109 GHLAVASVLLQ 119
G V + +
Sbjct: 178 GRQEVIKIFTE 188
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 6/105 (5%)
Query: 34 AVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDAR 93
A R G + V S +A GGNI+ + TPL+ A Q V++LL +GAD +
Sbjct: 164 AARRGHVECVNSLIAY----GGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQG 219
Query: 94 DGESGWSSLHRALHFGHLAVASVLLQSGASITLEDCKSRTPVDLL 138
G+ S LH + +A +L+ GA ++ + + PV+L+
Sbjct: 220 KGQD--SPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELV 262
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 63 FGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRALHFGHLAVASVLLQSGA 122
FG T L N I RRLL GA+PD +D +G++ +H A G L LL+ A
Sbjct: 37 FGRTALQVMKLGNP-EIARRLLLRGANPDLKD-RTGFAVIHDAARAGQLDTLQTLLEFQA 94
Query: 123 SITLEDCKSRTPVDL 137
+ +ED + P+ L
Sbjct: 95 DVNIEDNEGNLPLHL 109
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 40.8 bits (94), Expect = 0.004, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 34/67 (50%)
Query: 68 LHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRALHFGHLAVASVLLQSGASITLE 127
L A+ V +V++LL GA+ + ++ E GW+ LH A+ + +LL+ GA L
Sbjct: 9 LIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLR 68
Query: 128 DCKSRTP 134
TP
Sbjct: 69 KKNGATP 75
Score = 35.4 bits (80), Expect = 0.17, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 42/88 (47%)
Query: 41 ADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWS 100
+DVE+ LL +G ++N R G TPL A+ + + +V+RLL G +
Sbjct: 196 SDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKT 255
Query: 101 SLHRALHFGHLAVASVLLQSGASITLED 128
+L A+ +A +L + GAS D
Sbjct: 256 ALLLAVELKLKKIAELLCKRGASTDCGD 283
Score = 34.7 bits (78), Expect = 0.32, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 42 DVESALALLKKNGGNIN-SRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWS 100
DV+ LL+ G N+N G TPLH+A+ ++ IV LL GADP R ++G +
Sbjct: 17 DVDLVQQLLE-GGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRK-KNGAT 74
Query: 101 SLHRALHFGHLAVASVLLQSGASI 124
A G + + + L GA +
Sbjct: 75 PFLLAAIAGSVKLLKLFLSKGADV 98
Score = 29.6 bits (65), Expect = 9.9, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 44 ESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLH 103
E + LL ++G + R G TP A V +++ L+ GAD + D G+++
Sbjct: 52 EDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDF-YGFTAFM 110
Query: 104 RALHFGHLAVASVLLQSGASITL 126
A +G + L + GA++ L
Sbjct: 111 EAAVYGKVKALKFLYKRGANVNL 133
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Query: 49 LLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRALHF 108
+L + G NI++ + TPL A N + V+ L+ AGA D +D E G + LH A
Sbjct: 29 MLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAE-GSTCLHLAAKK 87
Query: 109 GHLAVASVLLQSG-ASITLEDCKSRTPV 135
GH V LL +G + +D TP+
Sbjct: 88 GHYEVVQYLLSNGQMDVNCQDDGGWTPM 115
Score = 36.6 bits (83), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 50/105 (47%), Gaps = 4/105 (3%)
Query: 33 LAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDA 92
LA ++G V+ LL ++N ++ G TP+ A V +V+ LL+ G+D +
Sbjct: 83 LAAKKGHYEVVQY---LLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINI 139
Query: 93 RDGESGWSSLHRALHFGHLAVASVLLQSGASITLEDCKSRTPVDL 137
RD E LH A G + +A +LL + + + +P+ +
Sbjct: 140 RDNEEN-ICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHI 183
Score = 30.4 bits (67), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 66 TPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRALHFGHLAVASVLLQSGASIT 125
+PLH+A V I L+ AGA+ D E + L A HL L+++GA +
Sbjct: 13 SPLHAAAEAGHVDICHMLVQAGANIDTC-SEDQRTPLMEAAENNHLEAVKYLIKAGALVD 71
Query: 126 LEDCKSRTPVDL 137
+D + T + L
Sbjct: 72 PKDAEGSTCLHL 83
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 40.8 bits (94), Expect = 0.004, Method: Composition-based stats.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 63 FGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRALHFGHLAVASVLLQSGA 122
FG T L N I RRLL GA+PD +D +G++ +H A G L LL+ A
Sbjct: 37 FGRTALQVMKLGNP-EIARRLLLRGANPDLKD-RTGFAVIHDAARAGFLDTLQTLLEFQA 94
Query: 123 SITLEDCKSRTPVDL 137
+ +ED + P+ L
Sbjct: 95 DVNIEDNEGNLPLHL 109
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 40.8 bits (94), Expect = 0.004, Method: Composition-based stats.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 63 FGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRALHFGHLAVASVLLQSGA 122
FG T L N I RRLL GA+PD +D +G++ +H A G L LL+ A
Sbjct: 37 FGRTALQVMKLGNP-EIARRLLLRGANPDLKD-RTGFAVIHDAARAGFLDTLQTLLEFQA 94
Query: 123 SITLEDCKSRTPVDL 137
+ +ED + P+ L
Sbjct: 95 DVNIEDNEGNLPLHL 109
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 40.4 bits (93), Expect = 0.006, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 32/58 (55%)
Query: 80 VRRLLAAGADPDARDGESGWSSLHRALHFGHLAVASVLLQSGASITLEDCKSRTPVDL 137
VR L AGAD D RD G ++LH A + V L++ GA I +ED + T ++L
Sbjct: 93 VRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALEL 150
Score = 29.6 bits (65), Expect = 9.7, Method: Composition-based stats.
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 7/102 (6%)
Query: 44 ESALALLKKNGGNINSRNIFG-LTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSL 102
+ + LL + G +++ R++ G LT LH A + +V L+ GAD + D E G ++L
Sbjct: 90 DKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVED-ERGLTAL 148
Query: 103 HRALHFGHLAVASVLLQSGASITLEDCKSRTPVDLLSGPVLQ 144
A +Q G I LE +++L G V +
Sbjct: 149 ELAREILKTTPKGNPMQFGRRIGLEKV-----INVLEGQVFE 185
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 35/70 (50%)
Query: 68 LHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRALHFGHLAVASVLLQSGASITLE 127
L A+ V +V++LL GA+ + ++ E GW+ LH A+ + +LL+ GA L
Sbjct: 29 LIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLR 88
Query: 128 DCKSRTPVDL 137
TP L
Sbjct: 89 KKNGATPFIL 98
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 54/128 (42%), Gaps = 12/128 (9%)
Query: 42 DVESALALLKKNGGNIN-SRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWS 100
DV+ LL+ G N+N G TPLH+A+ ++ IV LL GADP R ++G +
Sbjct: 37 DVDLVQQLLE-GGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRK-KNGAT 94
Query: 101 SLHRALHFGHLAVASVLLQSGASITLEDCKSRTPVDLLSGPVLQVVGSGYNSVATEVFSW 160
A G + + + L GA + +C + V Y V F +
Sbjct: 95 PFILAAIAGSVKLLKLFLSKGADVN--ECDFYGFTAFMEAAV-------YGKVKALKFLY 145
Query: 161 GSGANYQL 168
GAN L
Sbjct: 146 KRGANVNL 153
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 3/89 (3%)
Query: 41 ADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWS 100
+DVE+ LL +G ++N R G TPL A+ + + +V+RLL G +
Sbjct: 216 SDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKT 275
Query: 101 SLHRALHFGHLAVASVLLQSGASITLEDC 129
+L A+ +A +L + GAS DC
Sbjct: 276 ALLLAVELKLKKIAELLCKRGAST---DC 301
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 50/107 (46%), Gaps = 5/107 (4%)
Query: 31 LCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADP 90
L LA + G + E +L + G + ++R TPLH A IV LL GAD
Sbjct: 38 LHLAAQYGHFSTTE----VLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADV 93
Query: 91 DARDGESGWSSLHRALHFGHLAVASVLLQSGASITLEDCKSRTPVDL 137
+A+D ++LH A H V +L++ GA + + +T D+
Sbjct: 94 NAKDMLK-MTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDI 139
Score = 37.0 bits (84), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 46/106 (43%), Gaps = 2/106 (1%)
Query: 30 DLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGAD 89
DL + E + A + + +L NG + + G +PLH A LL AG
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGAPFTT-DWLGTSPLHLAAQYGHFSTTEVLLRAGVS 59
Query: 90 PDARDGESGWSSLHRALHFGHLAVASVLLQSGASITLEDCKSRTPV 135
DAR + + LH A GH + VLL+ GA + +D T +
Sbjct: 60 RDAR-TKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTAL 104
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 9/86 (10%)
Query: 80 VRRLLAAGADPDARDGESGWSSLHRALHFGHLAVASVLLQSGASITLEDCKSRTPVDLLS 139
VR L+A GA P D G S LH A +GH + VLL++G S +RT VD
Sbjct: 18 VRILMANGA-PFTTDW-LGTSPLHLAAQYGHFSTTEVLLRAGVS-----RDARTKVD--R 68
Query: 140 GPVLQVVGSGYNSVATEVFSWGSGAN 165
P+ G+ ++ + G+ N
Sbjct: 69 TPLHMAASEGHANIVEVLLKHGADVN 94
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 40.0 bits (92), Expect = 0.007, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 32/58 (55%)
Query: 80 VRRLLAAGADPDARDGESGWSSLHRALHFGHLAVASVLLQSGASITLEDCKSRTPVDL 137
VR L AGAD D RD G ++LH A + V L++ GA I +ED + T ++L
Sbjct: 92 VRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALEL 149
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 6/105 (5%)
Query: 34 AVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDAR 93
A R G + V S +A GGNI+ + TPL+ A Q V++LL +GAD +
Sbjct: 108 AARRGHVECVNSLIAY----GGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQG 163
Query: 94 DGESGWSSLHRALHFGHLAVASVLLQSGASITLEDCKSRTPVDLL 138
G+ S LH +A +L+ GA ++ + + PV+L+
Sbjct: 164 KGQD--SPLHAVARTASEELACLLMDFGADTQAKNAEGKRPVELV 206
Score = 29.6 bits (65), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 29/135 (21%), Positives = 56/135 (41%), Gaps = 11/135 (8%)
Query: 35 VREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARD 94
+ E ++ + +L L G +N ++PLH A + V+ LL GA +
Sbjct: 7 MHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVT 66
Query: 95 GESGWSS-LHRALHFGHLAVASVLLQSGASITLEDCKSRTPVDLLSGPVLQVVGSGYNSV 153
+ W + L A G ++LLQ GAS+ P L+ P+ + G+
Sbjct: 67 AD--WHTPLFNACVSGSWDCVNLLLQHGASV--------QPESDLASPIHEAARRGHVEC 116
Query: 154 ATEVFSWGSGANYQL 168
+ ++G ++++
Sbjct: 117 VNSLIAYGGNIDHKI 131
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 51/94 (54%), Gaps = 3/94 (3%)
Query: 45 SALAL-LKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLH 103
+A+AL L K G + N ++ G +P+H A + ++ L+ GAD + DG +G +H
Sbjct: 54 TAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDG-TGALPIH 112
Query: 104 RALHFGHLAVASVLLQSGASITLEDCKSRTPVDL 137
A+ GH AV S L + + + D + TP++L
Sbjct: 113 LAVQEGHTAVVS-FLAAESDLHRRDARGLTPLEL 145
Score = 29.6 bits (65), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 46/105 (43%), Gaps = 10/105 (9%)
Query: 68 LHSAIWRNQVPIVRRLLAAG-ADPDARDGESGWSSLHRALHFGHLAVASVLLQSGASITL 126
L A R V VRRLL PDA + G ++L + + FG A+A LL+ GAS +
Sbjct: 12 LSGAAARGDVQEVRRLLHRELVHPDALN-RFGKTAL-QVMMFGSTAIALELLKQGASPNV 69
Query: 127 EDCKSRTPVDLLSGPVLQVVGSGYNSVATEVFSWGSGANYQLGTG 171
+D +PV +G+ + G+ N GTG
Sbjct: 70 QDTSGTSPVH-------DAARTGFLDTLKVLVEHGADVNVPDGTG 107
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Query: 64 GLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRALHFGHLAVASVLLQSGAS 123
G+T LH+AI IV L+ AGA+ ++ D GW+ LH A + L+Q GA+
Sbjct: 54 GITALHNAICGANYSIVDFLITAGANVNSPDSH-GWTPLHCAASCNDTVICMALVQHGAA 112
Query: 124 I---TLED 128
I TL D
Sbjct: 113 IFATTLSD 120
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 51/94 (54%), Gaps = 3/94 (3%)
Query: 45 SALAL-LKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLH 103
+A+AL L K G + N ++ G +P+H A + ++ L+ GAD + DG +G +H
Sbjct: 48 TAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDG-TGALPIH 106
Query: 104 RALHFGHLAVASVLLQSGASITLEDCKSRTPVDL 137
A+ GH AV S L + + + D + TP++L
Sbjct: 107 LAVQEGHTAVVS-FLAAESDLHRRDARGLTPLEL 139
Score = 29.6 bits (65), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 46/105 (43%), Gaps = 10/105 (9%)
Query: 68 LHSAIWRNQVPIVRRLLAAG-ADPDARDGESGWSSLHRALHFGHLAVASVLLQSGASITL 126
L A R V VRRLL PDA + G ++L + + FG A+A LL+ GAS +
Sbjct: 6 LSGAAARGDVQEVRRLLHRELVHPDALN-RFGKTAL-QVMMFGSTAIALELLKQGASPNV 63
Query: 127 EDCKSRTPVDLLSGPVLQVVGSGYNSVATEVFSWGSGANYQLGTG 171
+D +PV +G+ + G+ N GTG
Sbjct: 64 QDTSGTSPVH-------DAARTGFLDTLKVLVEHGADVNVPDGTG 101
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 39.3 bits (90), Expect = 0.011, Method: Composition-based stats.
Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 5/99 (5%)
Query: 29 KDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGA 88
K+ A++ G L +V+ +A G ++N G PLH A Q+ I+ LL GA
Sbjct: 4 KEFMWALKNGDLDEVKDYVA----KGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGA 59
Query: 89 DPDARDGESGWSSLHRALHFGHLAVASVLLQSGASITLE 127
D +A D + + L A++ GH++ +LL GA T++
Sbjct: 60 DINAPD-KHHITPLLSAVYEGHVSCVKLLLSKGADKTVK 97
Score = 35.8 bits (81), Expect = 0.13, Method: Composition-based stats.
Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 23 SLGGVQKDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRR 82
+L G +K L A G L +E LLK G +IN+ + +TPL SA++ V V+
Sbjct: 31 TLEGGRKPLHYAADCGQLEILE--FLLLK--GADINAPDKHHITPLLSAVYEGHVSCVKL 86
Query: 83 LLAAGADPDARDGESGWSSL 102
LL+ GAD + G G ++L
Sbjct: 87 LLSKGADKTVK-GPDGLTAL 105
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 39.3 bits (90), Expect = 0.012, Method: Composition-based stats.
Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 5/99 (5%)
Query: 29 KDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGA 88
K+ A++ G L +V+ +A G ++N G PLH A Q+ I+ LL GA
Sbjct: 9 KEFMWALKNGDLDEVKDYVA----KGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGA 64
Query: 89 DPDARDGESGWSSLHRALHFGHLAVASVLLQSGASITLE 127
D +A D + + L A++ GH++ +LL GA T++
Sbjct: 65 DINAPD-KHHITPLLSAVYEGHVSCVKLLLSKGADKTVK 102
Score = 34.3 bits (77), Expect = 0.34, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 23 SLGGVQKDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRR 82
+L G +K L A G L +E LLK G +IN+ + +TPL SA++ V V+
Sbjct: 36 TLEGGRKPLHYAADCGQLEILE--FLLLK--GADINAPDKHHITPLLSAVYEGHVSCVKL 91
Query: 83 LLAAGAD 89
LL+ GAD
Sbjct: 92 LLSKGAD 98
>pdb|1D9S|A Chain A, Tumor Suppressor P15(Ink4b) Structure By Comparative
Modeling And Nmr Data
Length = 136
Score = 38.9 bits (89), Expect = 0.017, Method: Composition-based stats.
Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 2/95 (2%)
Query: 43 VESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSL 102
VE+ LL+ G + N+ N FG P+ + + LL GA+P+ D + +
Sbjct: 25 VETVRQLLEA-GADPNALNRFGRRPIQ-VMMMGSAQVAELLLLHGAEPNCADPATLTRPV 82
Query: 103 HRALHFGHLAVASVLLQSGASITLEDCKSRTPVDL 137
H A G L VL ++GA + + D R PVDL
Sbjct: 83 HDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDL 117
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 38.9 bits (89), Expect = 0.017, Method: Composition-based stats.
Identities = 27/75 (36%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 63 FGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRALHFGHLAVASVLLQSGA 122
FG T L N I RRLL GA+PD +D +G + +H A G L LL+ A
Sbjct: 37 FGRTALQVMKLGNP-EIARRLLLRGANPDLKD-RTGNAVIHDAARAGFLDTLQTLLEFQA 94
Query: 123 SITLEDCKSRTPVDL 137
+ +ED + P+ L
Sbjct: 95 DVNIEDNEGNLPLHL 109
>pdb|1DC2|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 20
Structures
pdb|1A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 18
Structures
pdb|2A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a,
Restrained Minimized Mean Structure
Length = 156
Score = 38.5 bits (88), Expect = 0.021, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 52/120 (43%), Gaps = 5/120 (4%)
Query: 18 PARKSSLGGVQKDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQV 77
PA SS+ L A G + +V + L + G N+ N +G P+ +
Sbjct: 3 PAAGSSMEPSADWLATAAARGRVEEVRALL----EAGALPNAPNSYGRRPIQ-VMMMGSA 57
Query: 78 PIVRRLLAAGADPDARDGESGWSSLHRALHFGHLAVASVLLQSGASITLEDCKSRTPVDL 137
+ LL GA+P+ D + +H A G L VL ++GA + + D R PVDL
Sbjct: 58 RVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDL 117
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 37.4 bits (85), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 7/85 (8%)
Query: 53 NGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRALHFGHLA 112
NGG N+ TPL A N + LL GA+ + D +G LH A GH
Sbjct: 230 NGGQDNA------TPLIQATAANSLLACEFLLQNGANVNQAD-SAGRGPLHHATILGHTG 282
Query: 113 VASVLLQSGASITLEDCKSRTPVDL 137
+A + L+ GA + D + R P+ +
Sbjct: 283 LACLFLKRGADLGARDSEGRDPLTI 307
Score = 33.5 bits (75), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 23/51 (45%)
Query: 46 ALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGE 96
A L +NG N+N + G PLH A + L GAD ARD E
Sbjct: 250 ACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSE 300
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 37.4 bits (85), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 7/85 (8%)
Query: 53 NGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRALHFGHLA 112
NGG N+ TPL A N + LL GA+ + D +G LH A GH
Sbjct: 230 NGGQDNA------TPLIQATAANSLLACEFLLQNGANVNQAD-SAGRGPLHHATILGHTG 282
Query: 113 VASVLLQSGASITLEDCKSRTPVDL 137
+A + L+ GA + D + R P+ +
Sbjct: 283 LACLFLKRGADLGARDSEGRDPLTI 307
Score = 33.1 bits (74), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 23/51 (45%)
Query: 46 ALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGE 96
A L +NG N+N + G PLH A + L GAD ARD E
Sbjct: 250 ACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSE 300
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 37.4 bits (85), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 7/85 (8%)
Query: 53 NGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRALHFGHLA 112
NGG N+ TPL A N + LL GA+ + D +G LH A GH
Sbjct: 230 NGGQDNA------TPLIQATAANSLLACEFLLQNGANVNQAD-SAGRGPLHHATILGHTG 282
Query: 113 VASVLLQSGASITLEDCKSRTPVDL 137
+A + L+ GA + D + R P+ +
Sbjct: 283 LACLFLKRGADLGARDSEGRDPLTI 307
Score = 33.1 bits (74), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 23/51 (45%)
Query: 46 ALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGE 96
A L +NG N+N + G PLH A + L GAD ARD E
Sbjct: 250 ACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSE 300
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 37.4 bits (85), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 24/40 (60%)
Query: 57 INSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGE 96
+N +N G T LH+A W+ IV+ LLA GA D R+ E
Sbjct: 133 LNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIE 172
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 37.0 bits (84), Expect = 0.060, Method: Composition-based stats.
Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 49 LLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRALHF 108
LL+ N+N+R G TPL A +V L+ A AD +A D SG ++LH A
Sbjct: 103 LLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAAD-NSGKTALHWAAAV 161
Query: 109 GHLAVASVLLQSGASITLEDCKSRTPVDL 137
+ ++LL A+ +D K TP+ L
Sbjct: 162 NNTEAVNILLMHHANRDAQDDKDETPLFL 190
Score = 31.2 bits (69), Expect = 3.3, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 31/57 (54%)
Query: 79 IVRRLLAAGADPDARDGESGWSSLHRALHFGHLAVASVLLQSGASITLEDCKSRTPV 135
++ LLA GA+ +A ++G +SLH A F A LL +GA +D RTP+
Sbjct: 32 VISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPL 88
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Query: 64 GLTPLHSAIWRNQVPIVRRLLAA-GADPDARDGESGWSSLHRALHFGHLAVASVLLQSGA 122
G T LH A + PIV+ L+ G++ D +D E G + + A G + V L+Q GA
Sbjct: 279 GRTALHYAAQVSNXPIVKYLVGEKGSNKDKQD-EDGKTPIXLAAQEGRIEVVXYLIQQGA 337
Query: 123 SITLEDCKSRTPVDL 137
S+ D T L
Sbjct: 338 SVEAVDATDHTARQL 352
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 1/90 (1%)
Query: 49 LLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRALHF 108
L +NG ++ ++ F PLH A + ++ L G + GW+ L AL
Sbjct: 125 FLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAE 184
Query: 109 GHLAVASVLLQS-GASITLEDCKSRTPVDL 137
GH A +L++ GA L D K D+
Sbjct: 185 GHGDAAVLLVEKYGAEYDLVDNKGAKAEDV 214
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 64 GLTPLHSAIWRNQVPIVRRLLAAGADPDA-RDGESGWSSLHRALHFGHLAVASVLLQSGA 122
G TP H A + +V+ L PD + G + LH A+ V+ L+++GA
Sbjct: 72 GWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGA 131
Query: 123 SITLEDCKSRTPV 135
S+ ++D ++ P+
Sbjct: 132 SVRIKDKFNQIPL 144
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 35.0 bits (79), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 1/90 (1%)
Query: 49 LLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRALHF 108
L +NG ++ ++ F PLH A + ++ L G + GW+ L AL
Sbjct: 125 FLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAE 184
Query: 109 GHLAVASVLLQS-GASITLEDCKSRTPVDL 137
GH A +L++ GA L D K D+
Sbjct: 185 GHGDAAVLLVEKYGAEYDLVDNKGAKAEDV 214
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 64 GLTPLHSAIWRNQVPIVRRLLAAGADPDA-RDGESGWSSLHRALHFGHLAVASVLLQSGA 122
G TP H A + +V+ L PD + G + LH A+ V+ L+++GA
Sbjct: 72 GWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGA 131
Query: 123 SITLEDCKSRTPV 135
S+ ++D ++ P+
Sbjct: 132 SVRIKDKFNQIPL 144
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 35.0 bits (79), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 1/90 (1%)
Query: 49 LLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRALHF 108
L +NG ++ ++ F PLH A + ++ L G + GW+ L AL
Sbjct: 125 FLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAE 184
Query: 109 GHLAVASVLLQS-GASITLEDCKSRTPVDL 137
GH A +L++ GA L D K D+
Sbjct: 185 GHGDAAVLLVEKYGAEYDLVDNKGAKAEDV 214
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 64 GLTPLHSAIWRNQVPIVRRLLAAGADPDA-RDGESGWSSLHRALHFGHLAVASVLLQSGA 122
G TP H A + +V+ L PD + G + LH A+ V+ L+++GA
Sbjct: 72 GWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGA 131
Query: 123 SITLEDCKSRTPV 135
S+ ++D ++ P+
Sbjct: 132 SVRIKDKFNQIPL 144
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 33.9 bits (76), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 3/92 (3%)
Query: 46 ALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRA 105
AL LLK+ G + N ++ G +P+H A + ++ L+ GAD +A D +G +H A
Sbjct: 59 ALELLKQ-GASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALD-STGSLPIHLA 116
Query: 106 LHFGHLAVASVLLQSGASITLEDCKSRTPVDL 137
+ GH +V S L + + D TP++L
Sbjct: 117 IREGHSSVVS-FLAPESDLHHRDASGLTPLEL 147
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 33.9 bits (76), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 3/92 (3%)
Query: 46 ALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRA 105
AL LLK+ G + N ++ G +P+H A + ++ L+ GAD +A D +G +H A
Sbjct: 57 ALELLKQ-GASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALD-STGSLPIHLA 114
Query: 106 LHFGHLAVASVLLQSGASITLEDCKSRTPVDL 137
+ GH +V S L + + D TP++L
Sbjct: 115 IREGHSSVVS-FLAPESDLHHRDASGLTPLEL 145
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 33.9 bits (76), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
Query: 50 LKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPD--ARDGESGWSSLHRALH 107
L+K +N + G TPL A ++ VR LL GADP A++ E S+L A
Sbjct: 22 LRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERE---SALSLAST 78
Query: 108 FGHLAVASVLLQSGASITLEDCKSRTPV 135
G+ + +LL+ I + D TP+
Sbjct: 79 GGYTDIVGLLLERDVDINIYDWNGGTPL 106
Score = 33.5 bits (75), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 47 LALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRAL 106
+ LL + +IN + G TPL A+ N V V LLA GAD + +SG++ + A+
Sbjct: 85 VGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADL-TTEADSGYTPMDLAV 143
Query: 107 HFGHLAVASVL 117
G+ V V+
Sbjct: 144 ALGYRKVQQVI 154
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 33.9 bits (76), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 50/136 (36%), Gaps = 39/136 (28%)
Query: 50 LKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPD--ARDGES---------- 97
L+K +N + G TPL A ++ VR LL GADP A++ ES
Sbjct: 22 LRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGY 81
Query: 98 --------------------GWSSLHRALHFGHLAVASVLLQSGASITLEDCKSRTPVDL 137
G + L A+H H+ LL GA +T E TP+DL
Sbjct: 82 TDIVGLLLERDVDINIYDWNGGTPLLYAVHGNHVKCVEALLARGADLTTEADSGYTPMDL 141
Query: 138 LSGPVLQVVGSGYNSV 153
V GY V
Sbjct: 142 -------AVALGYRKV 150
Score = 33.5 bits (75), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 47 LALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRAL 106
+ LL + +IN + G TPL A+ N V V LLA GAD + +SG++ + A+
Sbjct: 85 VGLLLERDVDINIYDWNGGTPLLYAVHGNHVKCVEALLARGADL-TTEADSGYTPMDLAV 143
Query: 107 HFGHLAVASVL 117
G+ V V+
Sbjct: 144 ALGYRKVQQVI 154
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 7/99 (7%)
Query: 31 LCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAG--- 87
L LA +E DV++ LLK G ++ R G T LH A + + L+ A
Sbjct: 7 LLLAAKEN---DVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPEL 63
Query: 88 -ADPDARDGESGWSSLHRALHFGHLAVASVLLQSGASIT 125
+P + G ++LH A+ ++ + LL GAS++
Sbjct: 64 VFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVS 102
Score = 31.2 bits (69), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 12/87 (13%)
Query: 64 GLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSL-HRALHFGH--LAVAS----- 115
G T LH A+ V +VR LLA GA AR S + H +++G L+ A+
Sbjct: 75 GQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSE 134
Query: 116 ----VLLQSGASITLEDCKSRTPVDLL 138
+L++ GA I +D T + +L
Sbjct: 135 EIVRLLIEHGADIRAQDSLGNTVLHIL 161
>pdb|1PKX|A Chain A, Crystal Structure Of Human Atic In Complex With Xmp
pdb|1PKX|B Chain B, Crystal Structure Of Human Atic In Complex With Xmp
pdb|1PKX|C Chain C, Crystal Structure Of Human Atic In Complex With Xmp
pdb|1PKX|D Chain D, Crystal Structure Of Human Atic In Complex With Xmp
pdb|1P4R|A Chain A, Crystal Structure Of Human Atic In Complex With Folate-
Based Inhibitor Bw1540u88ud
pdb|1P4R|B Chain B, Crystal Structure Of Human Atic In Complex With Folate-
Based Inhibitor Bw1540u88ud
pdb|1PL0|A Chain A, Crystal Structure Of Human Atic In Complex With Folate-
Based Inhibitor, Bw2315u89uc
pdb|1PL0|B Chain B, Crystal Structure Of Human Atic In Complex With Folate-
Based Inhibitor, Bw2315u89uc
pdb|1PL0|C Chain C, Crystal Structure Of Human Atic In Complex With Folate-
Based Inhibitor, Bw2315u89uc
pdb|1PL0|D Chain D, Crystal Structure Of Human Atic In Complex With Folate-
Based Inhibitor, Bw2315u89uc
Length = 592
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 7/98 (7%)
Query: 397 HVVSIAAGM---VHSTALTEDGALFYWASSDPDLRCQQLYSMCGRNVVSISAGKYWTAAV 453
V+ I AG +H T L D A ++W P + + + R +S + +Y T +
Sbjct: 440 QVIGIGAGQQSRIHCTRLAGDKANYWWLRHHPQVLSMKFKTGVKRAEISNAIDQYVTGTI 499
Query: 454 TATGDVYMWDGKKSKDNPPLVT---RLHGIKKATSVSV 488
D+ W ++ P L+T + ++K T VS+
Sbjct: 500 GEDEDLIKWKA-LFEEVPELLTEAEKKEWVEKLTEVSI 536
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 29.6 bits (65), Expect = 9.9, Method: Composition-based stats.
Identities = 30/98 (30%), Positives = 53/98 (54%), Gaps = 2/98 (2%)
Query: 41 ADVESALALLKKN-GGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGW 99
AD + +L +N ++++R G TPL A ++ L+ + AD +A D + G
Sbjct: 65 ADAQGVFQILLRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVD-DLGK 123
Query: 100 SSLHRALHFGHLAVASVLLQSGASITLEDCKSRTPVDL 137
S+LH A ++ A VLL++GA+ +++ K TP+ L
Sbjct: 124 SALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLFL 161
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.129 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,659,849
Number of Sequences: 62578
Number of extensions: 1250682
Number of successful extensions: 2761
Number of sequences better than 100.0: 118
Number of HSP's better than 100.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 2042
Number of HSP's gapped (non-prelim): 373
length of query: 1071
length of database: 14,973,337
effective HSP length: 109
effective length of query: 962
effective length of database: 8,152,335
effective search space: 7842546270
effective search space used: 7842546270
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (26.6 bits)