Query 001480
Match_columns 1071
No_of_seqs 747 out of 3790
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 01:53:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001480.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001480hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0783 Uncharacterized conser 100.0 3.4E-54 7.5E-59 497.8 30.1 392 56-460 44-453 (1267)
2 COG5184 ATS1 Alpha-tubulin sup 100.0 3.1E-39 6.6E-44 363.8 28.8 341 155-499 68-465 (476)
3 KOG1427 Uncharacterized conser 100.0 9.2E-37 2E-41 323.0 20.7 338 155-500 20-400 (443)
4 COG5184 ATS1 Alpha-tubulin sup 100.0 5.8E-36 1.3E-40 337.4 24.6 315 197-520 58-430 (476)
5 KOG1427 Uncharacterized conser 100.0 1.2E-34 2.7E-39 306.9 15.5 292 155-456 77-399 (443)
6 KOG0783 Uncharacterized conser 100.0 9E-33 1.9E-37 320.9 14.3 378 25-418 50-453 (1267)
7 KOG4412 26S proteasome regulat 99.8 6.6E-19 1.4E-23 176.9 6.6 125 1-137 53-178 (226)
8 KOG1428 Inhibitor of type V ad 99.7 1.5E-16 3.2E-21 191.2 16.6 171 179-349 604-871 (3738)
9 KOG1428 Inhibitor of type V ad 99.7 2.9E-16 6.3E-21 188.7 18.2 183 187-387 568-854 (3738)
10 KOG4412 26S proteasome regulat 99.7 3E-17 6.6E-22 165.0 5.8 127 1-140 87-213 (226)
11 KOG0509 Ankyrin repeat and DHH 99.7 1.3E-16 2.8E-21 186.5 7.8 125 1-137 93-218 (600)
12 PHA02859 ankyrin repeat protei 99.6 5.4E-16 1.2E-20 165.9 8.9 127 1-139 68-200 (209)
13 KOG0509 Ankyrin repeat and DHH 99.6 3.6E-16 7.7E-21 182.8 7.1 142 2-163 60-203 (600)
14 PHA02743 Viral ankyrin protein 99.6 2.4E-15 5.3E-20 155.2 8.7 105 25-131 55-161 (166)
15 PHA02791 ankyrin-like protein; 99.6 1.6E-15 3.5E-20 169.3 7.5 106 1-121 45-151 (284)
16 PHA02791 ankyrin-like protein; 99.6 2.9E-15 6.2E-20 167.4 8.5 120 1-137 14-134 (284)
17 KOG0508 Ankyrin repeat protein 99.6 1.9E-15 4E-20 170.0 6.9 150 1-162 57-207 (615)
18 PHA02878 ankyrin repeat protei 99.6 3.8E-15 8.3E-20 178.3 9.0 125 1-138 149-276 (477)
19 PHA02741 hypothetical protein; 99.5 5.8E-15 1.2E-19 152.7 6.9 116 24-139 18-140 (169)
20 PHA02878 ankyrin repeat protei 99.5 9.4E-15 2E-19 174.9 9.3 125 1-139 183-308 (477)
21 KOG0508 Ankyrin repeat protein 99.5 3.1E-15 6.8E-20 168.2 4.5 125 1-139 99-223 (615)
22 PHA02874 ankyrin repeat protei 99.5 1.3E-14 2.9E-19 171.5 9.1 110 24-138 121-230 (434)
23 PHA02875 ankyrin repeat protei 99.5 1.9E-14 4.2E-19 168.8 10.0 102 26-132 101-202 (413)
24 PHA03095 ankyrin-like protein; 99.5 1.5E-14 3.3E-19 172.1 8.9 124 1-137 29-158 (471)
25 PHA02875 ankyrin repeat protei 99.5 1.6E-14 3.5E-19 169.4 8.4 126 1-138 117-245 (413)
26 PHA02946 ankyin-like protein; 99.5 2.3E-14 4.9E-19 170.2 9.3 123 1-137 54-179 (446)
27 PHA02716 CPXV016; CPX019; EVM0 99.5 2E-14 4.3E-19 177.3 8.7 125 1-137 157-323 (764)
28 PHA02743 Viral ankyrin protein 99.5 1.6E-14 3.5E-19 149.1 6.7 115 25-139 18-136 (166)
29 PHA02874 ankyrin repeat protei 99.5 2.9E-14 6.3E-19 168.6 9.8 128 1-137 50-196 (434)
30 PF12796 Ank_2: Ankyrin repeat 99.5 2.8E-14 6E-19 131.1 7.4 89 31-128 1-89 (89)
31 PHA03100 ankyrin repeat protei 99.5 2.8E-14 6.1E-19 170.4 8.2 107 26-137 175-289 (480)
32 PHA02859 ankyrin repeat protei 99.5 4.1E-14 8.9E-19 151.5 8.4 109 24-137 48-164 (209)
33 PLN03192 Voltage-dependent pot 99.5 4.8E-14 1E-18 179.3 9.4 124 1-137 540-695 (823)
34 PHA02884 ankyrin repeat protei 99.5 5.4E-14 1.2E-18 157.6 8.0 107 28-138 34-144 (300)
35 PHA02795 ankyrin-like protein; 99.5 5E-14 1.1E-18 163.9 7.3 124 1-139 133-262 (437)
36 PHA02798 ankyrin-like protein; 99.5 6.1E-14 1.3E-18 168.5 8.3 80 2-93 92-177 (489)
37 KOG0512 Fetal globin-inducing 99.5 6.7E-14 1.5E-18 140.1 7.1 108 28-140 64-172 (228)
38 KOG0512 Fetal globin-inducing 99.5 6E-14 1.3E-18 140.4 6.6 125 2-138 79-205 (228)
39 KOG0514 Ankyrin repeat protein 99.5 1.1E-14 2.3E-19 159.9 1.0 130 20-161 261-430 (452)
40 PHA02798 ankyrin-like protein; 99.5 7.1E-14 1.5E-18 168.0 8.2 124 1-137 53-188 (489)
41 PHA02716 CPXV016; CPX019; EVM0 99.5 9.6E-14 2.1E-18 171.3 9.0 123 1-136 229-404 (764)
42 PHA03095 ankyrin-like protein; 99.5 9.9E-14 2.1E-18 165.2 8.6 109 25-138 185-297 (471)
43 PHA02989 ankyrin repeat protei 99.4 9.1E-14 2E-18 167.3 8.1 108 26-137 144-295 (494)
44 PHA02795 ankyrin-like protein; 99.4 1.1E-13 2.4E-18 161.1 8.0 122 1-129 164-293 (437)
45 KOG0195 Integrin-linked kinase 99.4 5.9E-14 1.3E-18 149.5 4.9 117 24-145 31-147 (448)
46 PHA02736 Viral ankyrin protein 99.4 7.8E-14 1.7E-18 141.6 5.1 98 25-124 53-152 (154)
47 KOG0502 Integral membrane anky 99.4 1.1E-13 2.4E-18 143.0 5.9 112 21-137 154-265 (296)
48 PHA03100 ankyrin repeat protei 99.4 1.7E-13 3.8E-18 163.6 7.8 124 1-137 50-182 (480)
49 PHA02741 hypothetical protein; 99.4 4.4E-13 9.5E-18 138.7 8.8 101 24-125 57-159 (169)
50 PHA02884 ankyrin repeat protei 99.4 5.2E-13 1.1E-17 149.7 10.0 110 1-119 48-158 (300)
51 PHA02876 ankyrin repeat protei 99.4 3E-13 6.5E-18 169.0 8.6 107 26-137 374-482 (682)
52 PHA02946 ankyin-like protein; 99.4 3E-13 6.6E-18 160.6 8.0 125 1-139 87-216 (446)
53 KOG4177 Ankyrin [Cell wall/mem 99.4 4.1E-13 8.9E-18 168.7 8.0 104 27-135 507-610 (1143)
54 PHA02730 ankyrin-like protein; 99.4 4.4E-13 9.6E-18 162.8 7.5 125 1-139 361-504 (672)
55 PHA02917 ankyrin-like protein; 99.4 6.3E-13 1.4E-17 164.3 8.6 129 1-137 50-235 (661)
56 PHA02989 ankyrin repeat protei 99.4 9.2E-13 2E-17 158.6 9.0 124 1-138 52-188 (494)
57 KOG0510 Ankyrin repeat protein 99.4 6.6E-13 1.4E-17 158.1 7.2 108 25-137 271-383 (929)
58 KOG0505 Myosin phosphatase, re 99.3 8.2E-13 1.8E-17 152.0 6.8 127 1-140 88-273 (527)
59 KOG4177 Ankyrin [Cell wall/mem 99.3 8.4E-13 1.8E-17 165.9 7.3 125 2-139 523-652 (1143)
60 KOG0510 Ankyrin repeat protein 99.3 9.1E-13 2E-17 156.9 7.1 112 23-137 302-416 (929)
61 PHA02736 Viral ankyrin protein 99.3 3.5E-13 7.5E-18 136.9 3.0 112 24-139 14-134 (154)
62 PHA02876 ankyrin repeat protei 99.3 2.2E-12 4.8E-17 161.3 8.8 124 2-138 256-382 (682)
63 PLN03192 Voltage-dependent pot 99.3 5E-12 1.1E-16 161.1 7.7 108 26-138 524-662 (823)
64 PHA02917 ankyrin-like protein; 99.3 7.7E-12 1.7E-16 154.8 8.5 111 1-125 118-257 (661)
65 KOG0514 Ankyrin repeat protein 99.2 6.9E-12 1.5E-16 138.1 6.7 91 25-120 338-429 (452)
66 PF12796 Ank_2: Ankyrin repeat 99.2 1.8E-11 4E-16 112.3 8.4 78 1-94 12-89 (89)
67 PHA02792 ankyrin-like protein; 99.2 8.2E-12 1.8E-16 150.4 7.3 124 1-139 323-451 (631)
68 KOG0502 Integral membrane anky 99.2 3E-12 6.5E-17 132.6 3.0 121 1-135 175-295 (296)
69 KOG4214 Myotrophin and similar 99.2 5.1E-12 1.1E-16 114.8 4.0 103 29-137 4-106 (117)
70 PHA02792 ankyrin-like protein; 99.2 2.6E-11 5.5E-16 146.3 8.3 117 1-125 354-480 (631)
71 KOG0507 CASK-interacting adapt 99.2 1.2E-11 2.5E-16 146.6 4.6 112 23-139 45-156 (854)
72 cd00204 ANK ankyrin repeats; 99.2 4.3E-11 9.3E-16 113.8 7.6 109 25-138 5-113 (126)
73 KOG0195 Integrin-linked kinase 99.2 2.3E-11 5E-16 130.0 5.9 113 1-126 49-161 (448)
74 PTZ00322 6-phosphofructo-2-kin 99.2 4E-11 8.8E-16 149.0 8.8 106 29-139 84-196 (664)
75 PF13857 Ank_5: Ankyrin repeat 99.2 1.5E-11 3.3E-16 104.0 3.2 55 50-105 1-56 (56)
76 PHA02730 ankyrin-like protein; 99.1 5.9E-11 1.3E-15 144.5 8.2 119 1-126 397-526 (672)
77 KOG0505 Myosin phosphatase, re 99.1 4.6E-11 9.9E-16 137.9 6.5 124 2-137 56-237 (527)
78 TIGR00870 trp transient-recept 99.1 8.2E-11 1.8E-15 148.6 6.8 111 24-139 125-265 (743)
79 COG0666 Arp FOG: Ankyrin repea 99.1 2.8E-10 6E-15 119.2 8.9 112 25-141 71-190 (235)
80 TIGR00870 trp transient-recept 99.1 1.1E-10 2.4E-15 147.4 6.9 114 25-139 80-216 (743)
81 PF13637 Ank_4: Ankyrin repeat 99.1 2.8E-10 6E-15 95.3 6.2 54 27-84 1-54 (54)
82 KOG4214 Myotrophin and similar 99.1 2E-10 4.2E-15 104.7 5.6 75 26-105 33-107 (117)
83 COG0666 Arp FOG: Ankyrin repea 99.0 8.5E-10 1.8E-14 115.5 9.3 107 2-121 89-203 (235)
84 KOG0515 p53-interacting protei 99.0 3.9E-10 8.4E-15 128.7 6.2 104 29-137 552-656 (752)
85 PF13637 Ank_4: Ankyrin repeat 99.0 2.7E-10 5.8E-15 95.4 2.8 54 64-118 1-54 (54)
86 KOG0515 p53-interacting protei 99.0 4.3E-10 9.4E-15 128.3 5.4 95 22-120 578-674 (752)
87 cd00204 ANK ankyrin repeats; 99.0 2.4E-09 5.2E-14 101.8 9.0 105 1-118 22-126 (126)
88 KOG1710 MYND Zn-finger and ank 98.9 8.7E-10 1.9E-14 118.3 6.1 92 24-120 42-134 (396)
89 KOG2315 Predicted translation 98.9 3E-09 6.4E-14 123.2 7.3 53 695-747 514-566 (566)
90 KOG3676 Ca2+-permeable cation 98.8 2.1E-09 4.5E-14 129.6 5.2 111 24-139 181-316 (782)
91 KOG0507 CASK-interacting adapt 98.8 1.3E-09 2.8E-14 129.6 3.4 108 1-121 64-171 (854)
92 PF00415 RCC1: Regulator of ch 98.8 5.8E-09 1.3E-13 86.1 6.0 50 206-262 1-51 (51)
93 PF00415 RCC1: Regulator of ch 98.8 2.7E-09 5.9E-14 88.1 3.7 49 155-203 2-51 (51)
94 KOG3676 Ca2+-permeable cation 98.8 6.6E-09 1.4E-13 125.4 6.9 115 1-120 199-330 (782)
95 KOG1710 MYND Zn-finger and ank 98.8 5.2E-09 1.1E-13 112.5 4.7 108 26-137 11-118 (396)
96 PF13857 Ank_5: Ankyrin repeat 98.8 8.4E-09 1.8E-13 87.3 4.8 56 5-71 1-56 (56)
97 PF13540 RCC1_2: Regulator of 98.7 1.3E-08 2.8E-13 75.1 4.7 30 249-278 1-30 (30)
98 PF13540 RCC1_2: Regulator of 98.7 1.3E-08 2.9E-13 75.1 4.3 30 300-329 1-30 (30)
99 KOG0941 E3 ubiquitin protein l 98.7 3.5E-10 7.5E-15 136.2 -7.2 182 177-372 3-198 (850)
100 PTZ00322 6-phosphofructo-2-kin 98.7 3.4E-08 7.4E-13 123.1 9.8 92 2-106 98-196 (664)
101 KOG0941 E3 ubiquitin protein l 98.6 8.6E-10 1.9E-14 132.8 -9.3 172 243-416 10-198 (850)
102 KOG0506 Glutaminase (contains 98.5 5E-08 1.1E-12 110.8 4.5 95 24-123 503-598 (622)
103 KOG4369 RTK signaling protein 98.5 1.4E-07 3E-12 115.1 5.5 123 1-135 839-963 (2131)
104 KOG4369 RTK signaling protein 98.4 9.8E-08 2.1E-12 116.4 2.9 127 26-163 756-882 (2131)
105 PHA03098 kelch-like protein; P 98.4 2.2E-07 4.8E-12 113.2 5.3 92 529-623 64-157 (534)
106 KOG0818 GTPase-activating prot 98.4 4.6E-07 1E-11 103.5 6.2 90 28-122 134-224 (669)
107 PF13606 Ank_3: Ankyrin repeat 98.2 1.1E-06 2.4E-11 64.9 3.9 30 63-92 1-30 (30)
108 PF00023 Ank: Ankyrin repeat H 98.2 1.5E-06 3.2E-11 65.4 4.2 32 63-94 1-32 (33)
109 KOG0705 GTPase-activating prot 98.2 1.2E-06 2.6E-11 101.8 5.4 91 30-125 627-721 (749)
110 KOG0522 Ankyrin repeat protein 98.1 1.7E-06 3.7E-11 100.5 4.4 89 29-120 22-110 (560)
111 KOG4325 Uncharacterized conser 98.1 7.5E-06 1.6E-10 81.3 6.8 58 688-745 151-210 (212)
112 KOG0818 GTPase-activating prot 98.0 2.2E-06 4.7E-11 98.1 2.7 92 57-155 120-217 (669)
113 KOG0782 Predicted diacylglycer 97.9 9.7E-06 2.1E-10 93.7 4.4 86 28-118 900-987 (1004)
114 PHA02713 hypothetical protein; 97.8 1.6E-05 3.4E-10 97.6 5.8 93 527-623 82-175 (557)
115 PHA02790 Kelch-like protein; P 97.8 7.4E-06 1.6E-10 98.8 2.6 123 492-617 36-168 (480)
116 KOG0782 Predicted diacylglycer 97.8 1.1E-05 2.3E-10 93.4 3.7 101 31-136 870-972 (1004)
117 KOG2384 Major histocompatibili 97.8 1.5E-05 3.3E-10 82.1 3.7 66 54-120 2-68 (223)
118 KOG0705 GTPase-activating prot 97.8 3.3E-05 7.1E-10 90.2 6.9 82 3-92 641-722 (749)
119 PF00023 Ank: Ankyrin repeat H 97.7 4.9E-05 1.1E-09 57.1 4.3 33 26-62 1-33 (33)
120 PF13606 Ank_3: Ankyrin repeat 97.7 4.5E-05 9.8E-10 56.3 3.7 30 26-59 1-30 (30)
121 COG5354 Uncharacterized protei 97.6 4.3E-05 9.3E-10 88.5 4.2 49 697-745 510-558 (561)
122 KOG0511 Ankyrin repeat protein 97.6 8.9E-05 1.9E-09 83.1 6.4 86 28-121 37-122 (516)
123 KOG0521 Putative GTPase activa 97.6 4.2E-05 9.2E-10 96.0 4.3 88 26-118 655-742 (785)
124 KOG0506 Glutaminase (contains 97.4 0.00011 2.3E-09 84.5 3.8 75 62-137 504-579 (622)
125 KOG4350 Uncharacterized conser 97.4 0.00012 2.6E-09 82.6 3.7 116 505-623 75-197 (620)
126 KOG4441 Proteins containing BT 97.2 0.00042 9.2E-09 85.3 5.9 120 501-623 63-186 (571)
127 KOG0521 Putative GTPase activa 97.1 0.00032 6.9E-09 88.3 3.9 88 52-140 642-731 (785)
128 KOG3609 Receptor-activated Ca2 97.1 0.00038 8.3E-09 85.6 4.0 116 24-139 22-172 (822)
129 KOG0511 Ankyrin repeat protein 97.1 0.00035 7.6E-09 78.4 3.1 69 65-134 37-105 (516)
130 KOG0522 Ankyrin repeat protein 96.9 0.0013 2.7E-08 77.3 6.5 58 25-86 53-110 (560)
131 KOG4591 Uncharacterized conser 96.8 0.0014 3E-08 68.2 4.8 90 529-622 123-216 (280)
132 KOG0520 Uncharacterized conser 96.6 0.001 2.2E-08 83.5 2.5 95 25-125 572-668 (975)
133 KOG2505 Ankyrin repeat protein 96.2 0.0056 1.2E-07 71.3 5.3 69 46-118 406-480 (591)
134 PF07707 BACK: BTB And C-termi 96.0 0.013 2.8E-07 55.0 5.8 49 574-624 1-49 (103)
135 KOG0520 Uncharacterized conser 95.8 0.0035 7.6E-08 78.9 1.6 91 26-120 607-702 (975)
136 KOG2384 Major histocompatibili 95.8 0.021 4.6E-07 59.5 6.7 67 24-94 9-76 (223)
137 smart00248 ANK ankyrin repeats 95.6 0.018 3.9E-07 39.3 4.0 29 63-91 1-29 (30)
138 smart00875 BACK BTB And C-term 95.1 0.03 6.6E-07 51.9 5.0 47 575-623 2-48 (101)
139 KOG3669 Uncharacterized conser 94.2 8.3 0.00018 46.7 22.7 108 195-322 190-299 (705)
140 PF11725 AvrE: Pathogenicity f 94.1 0.31 6.7E-06 64.7 11.7 280 189-501 490-816 (1774)
141 PF11725 AvrE: Pathogenicity f 93.1 1.1 2.5E-05 59.7 14.5 294 188-512 422-780 (1774)
142 KOG2505 Ankyrin repeat protein 92.8 0.18 3.8E-06 59.4 5.9 65 2-72 407-471 (591)
143 smart00248 ANK ankyrin repeats 91.9 0.25 5.4E-06 33.4 3.8 28 27-58 2-29 (30)
144 TIGR02658 TTQ_MADH_Hv methylam 91.4 35 0.00075 40.0 26.0 289 187-494 37-347 (352)
145 KOG4682 Uncharacterized conser 91.1 0.2 4.3E-06 57.7 3.9 92 529-623 129-222 (488)
146 cd00200 WD40 WD40 domain, foun 91.0 23 0.00049 37.2 30.6 214 258-506 65-288 (289)
147 KOG2075 Topoisomerase TOP1-int 90.8 0.58 1.2E-05 55.3 7.3 92 529-623 176-272 (521)
148 KOG3609 Receptor-activated Ca2 90.1 0.58 1.2E-05 58.7 6.9 61 30-94 91-161 (822)
149 PLN02153 epithiospecifier prot 89.8 43 0.00094 38.6 22.9 20 449-468 307-326 (341)
150 KOG0291 WD40-repeat-containing 88.2 84 0.0018 39.8 26.1 72 397-468 352-425 (893)
151 KOG0315 G-protein beta subunit 87.6 13 0.00029 40.9 14.1 109 352-466 84-198 (311)
152 PF00651 BTB: BTB/POZ domain; 87.5 1.1 2.3E-05 42.3 5.5 52 549-600 57-110 (111)
153 PF04841 Vps16_N: Vps16, N-ter 86.4 81 0.0018 37.7 22.3 198 247-467 81-289 (410)
154 KOG0291 WD40-repeat-containing 85.9 1.1E+02 0.0024 38.8 24.8 109 259-379 312-422 (893)
155 KOG0943 Predicted ubiquitin-pr 85.7 0.078 1.7E-06 66.8 -4.1 136 186-329 372-509 (3015)
156 TIGR03300 assembly_YfgL outer 85.3 67 0.0015 37.3 20.1 55 405-462 320-376 (377)
157 KOG0943 Predicted ubiquitin-pr 84.3 0.25 5.5E-06 62.5 -0.7 125 298-422 374-504 (3015)
158 KOG0646 WD40 repeat protein [G 84.0 35 0.00075 40.7 16.2 155 248-421 83-245 (476)
159 KOG0315 G-protein beta subunit 83.9 77 0.0017 35.3 17.8 99 362-465 137-245 (311)
160 KOG3669 Uncharacterized conser 83.6 97 0.0021 38.1 19.8 107 254-376 190-299 (705)
161 KOG1987 Speckle-type POZ prote 83.6 0.94 2E-05 51.2 3.5 65 547-614 180-246 (297)
162 PF11822 DUF3342: Domain of un 82.6 1.8 4E-05 49.2 5.2 81 545-627 47-129 (317)
163 KOG1274 WD40 repeat protein [G 81.9 1.3E+02 0.0027 39.0 20.7 238 195-466 13-263 (933)
164 TIGR03548 mutarot_permut cycli 80.5 29 0.00062 39.7 14.2 18 407-424 216-233 (323)
165 PHA02713 hypothetical protein; 80.0 2 4.3E-05 53.3 4.8 54 551-605 74-127 (557)
166 cd00200 WD40 WD40 domain, foun 79.3 85 0.0018 32.7 27.2 215 198-462 64-288 (289)
167 KOG4441 Proteins containing BT 79.1 20 0.00044 44.7 13.1 103 366-468 423-534 (571)
168 PHA03098 kelch-like protein; P 78.0 2.5 5.5E-05 51.8 4.8 52 552-603 55-107 (534)
169 PHA02790 Kelch-like protein; P 76.5 3.2 7E-05 50.5 5.1 64 551-614 69-133 (480)
170 PLN02193 nitrile-specifier pro 75.2 1.1E+02 0.0023 37.3 17.7 59 406-466 321-387 (470)
171 KOG2075 Topoisomerase TOP1-int 73.2 5.9 0.00013 47.2 5.8 51 555-605 170-221 (521)
172 PF04762 IKI3: IKI3 family; I 72.3 3.1E+02 0.0067 36.6 21.7 188 297-499 426-630 (928)
173 KOG1587 Cytoplasmic dynein int 68.2 3.2E+02 0.0068 34.3 20.2 109 359-468 358-475 (555)
174 PF07569 Hira: TUP1-like enhan 66.7 21 0.00046 38.9 8.2 31 351-381 12-42 (219)
175 KOG1274 WD40 repeat protein [G 66.6 84 0.0018 40.5 13.9 144 305-466 13-169 (933)
176 KOG1900 Nuclear pore complex, 66.4 42 0.0009 44.8 11.7 141 310-463 92-270 (1311)
177 PF06128 Shigella_OspC: Shigel 66.3 9.8 0.00021 41.4 5.2 93 27-124 179-280 (284)
178 TIGR03548 mutarot_permut cycli 63.7 60 0.0013 37.1 11.6 104 362-466 116-233 (323)
179 PF12065 DUF3545: Protein of u 61.1 7.6 0.00016 33.4 2.6 31 702-750 21-51 (59)
180 PF06128 Shigella_OspC: Shigel 57.9 15 0.00032 40.1 4.7 45 46-90 232-280 (284)
181 TIGR01063 gyrA DNA gyrase, A s 57.0 2.4E+02 0.0052 36.9 16.3 151 305-462 544-715 (800)
182 PLN02153 epithiospecifier prot 56.0 3.7E+02 0.008 30.9 20.1 58 406-465 186-260 (341)
183 PRK05560 DNA gyrase subunit A; 55.1 2.4E+02 0.0051 37.0 15.8 151 305-462 546-718 (805)
184 KOG0293 WD40 repeat-containing 53.2 1.3E+02 0.0029 35.6 11.6 111 397-511 397-515 (519)
185 PF04762 IKI3: IKI3 family; I 52.4 7.2E+02 0.016 33.2 25.8 87 364-465 549-639 (928)
186 PRK11138 outer membrane biogen 51.8 4.6E+02 0.0099 30.8 20.8 57 405-463 335-392 (394)
187 PF07569 Hira: TUP1-like enhan 51.6 47 0.001 36.2 7.6 70 437-506 12-92 (219)
188 KOG1408 WD40 repeat protein [F 50.6 1.8E+02 0.0039 36.8 12.6 103 252-378 138-248 (1080)
189 KOG1900 Nuclear pore complex, 49.4 3.6E+02 0.0079 36.6 15.8 203 201-423 93-340 (1311)
190 KOG0294 WD40 repeat-containing 47.7 5E+02 0.011 30.1 18.4 251 177-474 29-290 (362)
191 smart00225 BTB Broad-Complex, 46.8 21 0.00045 31.3 3.4 44 551-594 46-90 (90)
192 PRK14131 N-acetylneuraminic ac 46.7 3.9E+02 0.0085 31.3 14.9 18 362-379 131-148 (376)
193 PLN02193 nitrile-specifier pro 45.1 6.5E+02 0.014 30.6 22.2 16 198-214 168-183 (470)
194 COG4257 Vgb Streptogramin lyas 43.0 1.7E+02 0.0036 33.3 9.9 139 196-376 62-205 (353)
195 KOG1408 WD40 repeat protein [F 42.3 4.4E+02 0.0094 33.7 14.0 27 298-324 218-248 (1080)
196 KOG0293 WD40 repeat-containing 42.2 3E+02 0.0064 32.9 12.1 107 353-466 397-514 (519)
197 PLN00033 photosystem II stabil 41.4 7E+02 0.015 29.9 17.3 184 303-504 104-304 (398)
198 KOG0316 Conserved WD40 repeat- 40.9 5.6E+02 0.012 28.7 17.4 180 299-506 103-296 (307)
199 PF10168 Nup88: Nuclear pore c 40.0 7.3E+02 0.016 32.1 16.5 125 199-323 34-177 (717)
200 PF11929 DUF3447: Domain of un 38.6 47 0.001 29.8 4.3 47 29-86 8-54 (76)
201 PHA02414 hypothetical protein 38.4 41 0.00088 31.8 3.8 32 698-732 3-34 (111)
202 KOG1240 Protein kinase contain 38.3 1E+03 0.023 32.4 17.2 76 247-327 1049-1130(1431)
203 PRK05560 DNA gyrase subunit A; 36.9 1.1E+03 0.024 31.0 22.2 211 194-423 545-772 (805)
204 PF08138 Sex_peptide: Sex pept 34.5 16 0.00034 30.7 0.5 9 895-903 46-54 (56)
205 PF00167 FGF: Fibroblast growt 34.3 4.1E+02 0.0088 25.9 10.5 67 354-423 2-69 (122)
206 KOG1230 Protein containing rep 34.0 6.4E+02 0.014 30.4 13.2 19 405-423 233-251 (521)
207 KOG0274 Cdc4 and related F-box 33.5 1E+03 0.023 29.6 23.9 217 255-506 260-479 (537)
208 PF02239 Cytochrom_D1: Cytochr 33.3 7.7E+02 0.017 29.1 14.4 232 249-506 29-284 (369)
209 KOG0646 WD40 repeat protein [G 33.1 9.7E+02 0.021 29.1 18.0 153 298-465 82-247 (476)
210 KOG1587 Cytoplasmic dynein int 32.7 1.1E+03 0.024 29.6 20.0 115 306-430 359-479 (555)
211 KOG2280 Vacuolar assembly/sort 32.4 8.9E+02 0.019 31.3 14.8 72 396-468 217-290 (829)
212 KOG2280 Vacuolar assembly/sort 31.4 4.8E+02 0.01 33.5 12.3 146 307-464 93-245 (829)
213 PF03158 DUF249: Multigene fam 30.8 73 0.0016 33.9 4.7 84 29-119 106-191 (192)
214 COG4257 Vgb Streptogramin lyas 29.6 4.6E+02 0.0099 30.0 10.6 135 306-462 62-205 (353)
215 TIGR03300 assembly_YfgL outer 29.4 9.3E+02 0.02 27.8 27.0 19 448-466 321-339 (377)
216 PTZ00421 coronin; Provisional 28.8 1.2E+03 0.026 28.8 28.4 121 293-424 71-199 (493)
217 smart00706 TECPR Beta propelle 28.3 90 0.002 23.5 3.7 24 189-212 9-33 (35)
218 KOG1539 WD repeat protein [Gen 27.1 1.5E+03 0.033 29.6 20.6 148 250-424 39-191 (910)
219 PRK13979 DNA topoisomerase IV 27.0 1.7E+03 0.036 30.0 20.4 159 256-423 516-689 (957)
220 KOG2106 Uncharacterized conser 27.0 1.3E+03 0.028 28.6 25.6 57 252-309 285-341 (626)
221 KOG1538 Uncharacterized conser 26.9 4.6E+02 0.01 33.1 10.9 32 190-221 15-47 (1081)
222 PF00167 FGF: Fibroblast growt 26.9 4.3E+02 0.0093 25.8 9.2 65 398-463 2-67 (122)
223 TIGR01062 parC_Gneg DNA topois 26.7 1.2E+03 0.025 30.5 15.1 139 310-462 497-651 (735)
224 TIGR01063 gyrA DNA gyrase, A s 26.3 1.6E+03 0.035 29.5 22.9 204 195-423 544-769 (800)
225 PLN00181 protein SPA1-RELATED; 26.2 1.5E+03 0.033 29.3 31.3 178 259-465 548-738 (793)
226 smart00706 TECPR Beta propelle 26.0 1.1E+02 0.0024 23.0 3.8 25 298-322 8-33 (35)
227 PF02166 Androgen_recep: Andro 25.7 23 0.0005 40.4 0.0 15 869-883 318-332 (423)
228 KOG0804 Cytoplasmic Zn-finger 24.5 48 0.001 39.5 2.2 136 695-869 357-493 (493)
229 PF11929 DUF3447: Domain of un 24.2 31 0.00068 30.9 0.6 47 66-120 8-54 (76)
230 KOG4693 Uncharacterized conser 24.1 2.6E+02 0.0056 31.6 7.5 104 361-467 80-202 (392)
231 PF12017 Tnp_P_element: Transp 24.0 97 0.0021 34.3 4.4 37 696-734 29-65 (236)
232 COG5420 Uncharacterized conser 23.0 3.8E+02 0.0082 23.7 6.7 52 694-745 8-67 (71)
233 TIGR01061 parC_Gpos DNA topois 22.5 1.7E+03 0.037 29.0 15.6 115 304-423 539-666 (738)
234 KOG0772 Uncharacterized conser 22.5 1.1E+03 0.024 29.1 12.8 157 299-469 227-398 (641)
235 PF08450 SGL: SMP-30/Gluconola 21.9 1E+03 0.022 25.6 22.1 135 364-499 90-245 (246)
236 KOG0299 U3 snoRNP-associated p 21.8 2.2E+02 0.0047 34.3 6.8 47 694-740 69-115 (479)
237 KOG1240 Protein kinase contain 21.7 7.2E+02 0.016 33.8 11.8 159 298-464 1049-1224(1431)
238 PF04841 Vps16_N: Vps16, N-ter 21.6 1.4E+03 0.031 27.2 21.4 195 189-423 82-287 (410)
239 PRK14131 N-acetylneuraminic ac 21.2 4E+02 0.0087 31.2 9.2 19 406-424 131-149 (376)
240 KOG2675 Adenylate cyclase-asso 20.4 81 0.0017 37.6 3.0 49 695-751 105-153 (480)
241 PF04568 IATP: Mitochondrial A 20.1 1.3E+02 0.0028 29.0 3.8 15 696-710 69-83 (100)
No 1
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=100.00 E-value=3.4e-54 Score=497.76 Aligned_cols=392 Identities=29% Similarity=0.467 Sum_probs=318.6
Q ss_pred CCcccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCccccccccccccccchhhhhccccccccccCCCCCCc
Q 001480 56 NINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRALHFGHLAVASVLLQSGASITLEDCKSRTPV 135 (1071)
Q Consensus 56 diN~~d~~G~TpLH~Aa~~g~~eivk~LL~~GAd~n~~d~~~G~TpL~~A~~~g~~~vv~lLl~~Ga~v~l~d~~G~tpL 135 (1071)
-+|.+|.+|+|+||+|+..+...++++||.+|+|++.+|.+.|+||||.|.++|+++|+.+||.+|+++.++|.+|..|+
T Consensus 44 ~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dkeglspl 123 (1267)
T KOG0783|consen 44 LANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDKEGLSPL 123 (1267)
T ss_pred hhhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEecccCCCHH
Confidence 37889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCceeeeccccccccceeeeccCCcccccCCCCcccccCCceeccCC--CceEEEEecCCceEEEEecCCcEEEEe
Q 001480 136 DLLSGPVLQVVGSGYNSVATEVFSWGSGANYQLGTGNAHLQKLPCKVDSLH--GFVIKLISAAKFHSVAVTSLGEVYTWG 213 (1071)
Q Consensus 136 dl~sg~v~qa~~~~~~~~~g~VYsWGsN~~GQLG~G~~~~~~~P~~V~~l~--~~~I~~Va~G~~HslaLT~dG~Vy~WG 213 (1071)
++++--.....- -......+||+||.|.+..||.|+......|.+|+.+. |.-+.+|+.|.+|++++++.|+||+||
T Consensus 124 q~~~r~~~~~i~-~~~d~pndvy~wG~N~N~tLGign~~~~~~Pe~Vdlf~~Sg~~~~qV~l~kfHSvfl~~kgqvY~cG 202 (1267)
T KOG0783|consen 124 QFLSRVLSSTIH-PVLDLPNDVYGWGTNVNNTLGIGNGKEPSSPERVDLFKTSGQLFSQVQLSKFHSVFLTEKGQVYVCG 202 (1267)
T ss_pred HHHhhccccccc-cccCCccceeEecccccccccccCCCCCCChHHhHHHHhccHHHHHHHHhhceeeEecCCCcEEEec
Confidence 998752111000 01112369999999999999999999999999999775 556889999999999999999999999
Q ss_pred cCCCCCCCCCCCccCCCCcceeeeeeeecCCCCCCEEEEEecCceEEEEEcCCcEEEEeCCCCCCcCCCCCC-CCCccee
Q 001480 214 YGRGGRLGHPDFDIHSGQAAVITPRRVTSGLGSRRVKTIAAAKHHTVLATEGGEVFTWGSNREGQLGYTSVD-TQPTPRR 292 (1071)
Q Consensus 214 ~N~~GQLG~g~~~~~s~~~~v~~P~~V~~~l~~~~Iv~IAcG~~HslaLT~dG~VyswG~N~~GQLG~g~~~-~~~~P~~ 292 (1071)
.+..|+||+|+. ...+.|++|. ++.+.+|.+|++...|+++||.+|.||+||.|.++|||..+.. ....|.+
T Consensus 203 hG~GGRlG~gde------q~~~iPkrV~-gL~gh~~~qisvs~~HslvLT~~g~Vys~GlN~~hqLG~~~~~~~~~~p~q 275 (1267)
T KOG0783|consen 203 HGAGGRLGFGDE------QYNFIPKRVP-GLIGHKVIQISVSHTHSLVLTKFGSVYSWGLNGSHQLGLSNDELKKDDPIQ 275 (1267)
T ss_pred cCCCCccCcCcc------cccccccccc-cccccceEEEEeecceeEEEeecceEEEeecCcccccCCcCchhhcCchhh
Confidence 999999999954 4668899998 8899999999999999999999999999999999999987433 3455555
Q ss_pred ec-----cCcccEEEEEEcCCceeEEecCCcEEEEeCCCCCCcCCCCCCCCCcccceeeeccCCCCEEEEEecCCeEEEE
Q 001480 293 VS-----SLKLKIIAVAAANKHTAVVSESGEVFTWGCNREGQLGYGTSNSASNYTPRVVESLKGKDLVGVAAAKYHTIVL 367 (1071)
Q Consensus 293 V~-----~l~~~Iv~VacG~~HSlaLT~dG~VY~WG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~I~~IaaG~~htlaL 367 (1071)
|. ++. .|+.|++|..|+++.|+. .||+||.| .||||..+. ...+.+|+.+..+ ...|..|.|....|+++
T Consensus 276 I~a~r~kg~~-~iIgvaAg~~hsVawt~~-~VY~wGlN-~GQlGi~~n-~~~Vt~Pr~l~~~-~~~v~~v~a~~~ATVc~ 350 (1267)
T KOG0783|consen 276 ITARRIKGFK-QIIGVAAGKSHSVAWTDT-DVYSWGLN-NGQLGISDN-ISVVTTPRRLAGL-LSPVIHVVATTRATVCL 350 (1267)
T ss_pred hhhHhhcchh-hhhhhhcccceeeeeecc-eEEEeccc-CceecCCCC-Cceeecchhhccc-ccceEEEEecCccEEEE
Confidence 54 333 799999999999999976 69999999 899998665 4456678766432 35799999999999999
Q ss_pred eeCCcEEEEecCCCCCCCcc------ceec----cccCCcEEEEEeCCCcceEEecCCcEEEEeCCCCCCceeeeeecCC
Q 001480 368 GADGERVIVARNLKKSGSTP------LKFH----RKIKLHVVSIAAGMVHSTALTEDGALFYWASSDPDLRCQQLYSMCG 437 (1071)
Q Consensus 368 t~dG~Vy~wG~n~~~~~~~p------~~~~----~~~~~~I~~Ia~G~~hslaLt~dG~Vy~WG~n~~~~~p~~v~~l~g 437 (1071)
+.+|.+|++......-.... +.+. .....++.+..+.....+++|+-|.||+|-+++.....-....+.-
T Consensus 351 ~~~~~i~~~ady~~~k~~~n~~~lks~~V~gg~l~~~~~~~~k~~a~~~kll~lte~g~Vy~w~s~ns~~~~c~ftp~r~ 430 (1267)
T KOG0783|consen 351 LQNNSIIAFADYNQVKLPFNVDFLKSLKVTGGPLSLTRFNVRKLLASENKLLVLTELGEVYEWDSKNSTRTSCKFTPLRI 430 (1267)
T ss_pred ecCCcEEEEecccceecCcchhccceeEEecCccchhhhhhhhcchhhhheeeeccCCeEEEEecCCCceeeeeccccee
Confidence 99999999876421111100 0000 0011256677777888999999999999998876543333322322
Q ss_pred ceeEEEEeCCcEEEEEeeCCcEE
Q 001480 438 RNVVSISAGKYWTAAVTATGDVY 460 (1071)
Q Consensus 438 ~~Vv~IaaG~~htlaLT~dG~Vy 460 (1071)
..|.+|+--.+..+++|.||.+|
T Consensus 431 ~~isdIa~~~N~~~~~t~dGc~~ 453 (1267)
T KOG0783|consen 431 FEISDIAWTANSLILCTRDGCWK 453 (1267)
T ss_pred eehhhhhhccceEEEEecCccee
Confidence 45668887788999999999444
No 2
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=100.00 E-value=3.1e-39 Score=363.84 Aligned_cols=341 Identities=27% Similarity=0.398 Sum_probs=263.5
Q ss_pred ceeeeccCCcccccCCCCcccc-cCCceeccC--CCceEEEEecCCceEEEEecCCcEEEEecCCCCCCCCCCC-cc---
Q 001480 155 TEVFSWGSGANYQLGTGNAHLQ-KLPCKVDSL--HGFVIKLISAAKFHSVAVTSLGEVYTWGYGRGGRLGHPDF-DI--- 227 (1071)
Q Consensus 155 g~VYsWGsN~~GQLG~G~~~~~-~~P~~V~~l--~~~~I~~Va~G~~HslaLT~dG~Vy~WG~N~~GQLG~g~~-~~--- 227 (1071)
..||+||+|..+|||.|..... ..|+.+... +...|++++||+.|+++|++||+||+||.|..|+||.... +.
T Consensus 68 ~~v~~~Gsn~~~eLGlg~de~~~~~P~~~~~~~~d~~~i~~~acGg~hsl~ld~Dg~lyswG~N~~G~Lgr~~~~~~~~~ 147 (476)
T COG5184 68 ASVYSWGSNGMNELGLGNDETKVDRPQLNPFGRIDKASIIKIACGGNHSLGLDHDGNLYSWGDNDDGALGRDIHKDICDQ 147 (476)
T ss_pred eeeEEEecCcceeeccCCchhcccCceecCcccccceeeEEeecCCceEEeecCCCCEEEeccCcccccccccccccccc
Confidence 6899999999999999987665 788888876 5678999999999999999999999999999999998651 00
Q ss_pred ------CCCCcceeeeeeeec---CCCCCCEEEEEecCceEEEEEcCCcEEEEeCCCCCCcCCCCCCCC------Cccee
Q 001480 228 ------HSGQAAVITPRRVTS---GLGSRRVKTIAAAKHHTVLATEGGEVFTWGSNREGQLGYTSVDTQ------PTPRR 292 (1071)
Q Consensus 228 ------~s~~~~v~~P~~V~~---~l~~~~Iv~IAcG~~HslaLT~dG~VyswG~N~~GQLG~g~~~~~------~~P~~ 292 (1071)
........+|..|.. .....+|++++||++++++|+++|+||+||.+..+.++.+..... .+|..
T Consensus 148 ~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~cg~e~svil~~~G~V~~~gt~r~~e~~~g~~~~s~k~~~~~~p~~ 227 (476)
T COG5184 148 NNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTFRCGELGQGSYKNSQKTSIQFTPLK 227 (476)
T ss_pred cccccccchhhcccCCceeeccccccCChheEEeecCCceEEEEccCCcEEEecCccccccccccccccccceeeeeeee
Confidence 012234567877772 122348999999999999999999999999999998888743332 33444
Q ss_pred eccCcccEEEEEEcCCceeEEecCCcEEEEeCCCCCCcCCCCCCCCCcccceeee-ccCCCCEEEEEecCCeEEEEeeCC
Q 001480 293 VSSLKLKIIAVAAANKHTAVVSESGEVFTWGCNREGQLGYGTSNSASNYTPRVVE-SLKGKDLVGVAAAKYHTIVLGADG 371 (1071)
Q Consensus 293 V~~l~~~Iv~VacG~~HSlaLT~dG~VY~WG~N~~GQLG~g~~~~~~~~~P~~V~-~l~~~~I~~IaaG~~htlaLt~dG 371 (1071)
+. ...|+++++|.+|.++|+++|+||+||+|..||||........ .+..+. .+.-..|..|+||.+|+++|+++|
T Consensus 228 v~--~~~i~qla~G~dh~i~lt~~G~vy~~Gs~qkgqlG~~~~e~~~--~~~lv~~~f~i~~i~~vacG~~h~~al~~~G 303 (476)
T COG5184 228 VP--KKAIVQLAAGADHLIALTNEGKVYGWGSNQKGQLGRPTSERLK--LVVLVGDPFAIRNIKYVACGKDHSLALDEDG 303 (476)
T ss_pred cC--chheeeeccCCceEEEEecCCcEEEecCCcccccCCchhhhcc--cccccCChhhhhhhhhcccCcceEEEEcCCC
Confidence 43 4579999999999999999999999999999999998765422 222232 222345789999999999999999
Q ss_pred cEEEEecCCCCCCCcc-------ce-----eccccCCcEEEEEeCCCcceEEecCCcEEEEeCCCCCC-cee-----ee-
Q 001480 372 ERVIVARNLKKSGSTP-------LK-----FHRKIKLHVVSIAAGMVHSTALTEDGALFYWASSDPDL-RCQ-----QL- 432 (1071)
Q Consensus 372 ~Vy~wG~n~~~~~~~p-------~~-----~~~~~~~~I~~Ia~G~~hslaLt~dG~Vy~WG~n~~~~-~p~-----~v- 432 (1071)
++|+||-|..++...+ .. ........|..|++|..|+++|..+|.||.||.++.+. ... .+
T Consensus 304 ~i~a~G~n~fgqlg~~~~~~~~a~~tk~~~~~~~~~~~i~~is~ge~H~l~L~~~G~l~a~Gr~~~~qlg~~~~~~~~~~ 383 (476)
T COG5184 304 EIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQLLSGVTICSISAGESHSLILRKDGTLYAFGRGDRGQLGIQEEITIDVS 383 (476)
T ss_pred eEEEeccchhcccccCcccccceeeccccccccCCCceEEEEecCcceEEEEecCceEEEecCCccccccCcccceeecC
Confidence 9999999977766655 11 11123336899999999999999999999999987432 111 11
Q ss_pred --eecC-CceeEEEEeCCcEEEEEeeCCcEEEecCCCCCC--------CCCceEEec----CcccEEEEEecCCeEEEEE
Q 001480 433 --YSMC-GRNVVSISAGKYWTAAVTATGDVYMWDGKKSKD--------NPPLVTRLH----GIKKATSVSVGETHLLIVG 497 (1071)
Q Consensus 433 --~~l~-g~~Vv~IaaG~~htlaLT~dG~Vy~WG~N~~~~--------~~~~p~~v~----g~~~V~~Va~G~~HtlaL~ 497 (1071)
..+. ..++.+|+||..|+++.+.+|+||.||.+..++ ....|+.+. ...+++...||..+.++..
T Consensus 384 ~~~~ls~~~~~~~v~~gt~~~~~~t~~gsvy~wG~ge~gnlG~g~~~~~~~~pt~i~~~~~~~~~~i~~g~~~~~~v~~~ 463 (476)
T COG5184 384 TPTKLSVAIKLEQVACGTHHNIARTDDGSVYSWGWGEHGNLGNGPKEADVLVPTLIRQPLLSGHNIILAGYGNQFSVIEE 463 (476)
T ss_pred CccccccccceEEEEecCccceeeccCCceEEecCchhhhccCCchhhhccccccccccccCCCceEEeccCcceEEEec
Confidence 1122 246999999999999999999999999887543 334455554 4567888888888877765
Q ss_pred eC
Q 001480 498 SL 499 (1071)
Q Consensus 498 s~ 499 (1071)
..
T Consensus 464 ~~ 465 (476)
T COG5184 464 TM 465 (476)
T ss_pred ch
Confidence 44
No 3
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown]
Probab=100.00 E-value=9.2e-37 Score=323.04 Aligned_cols=338 Identities=22% Similarity=0.353 Sum_probs=269.4
Q ss_pred ceeeeccCCcccccCCCC---cccccCCceeccCCCceEEEEecC--CceEEEEecCCcEEEEecCCCCCCCCCCCccCC
Q 001480 155 TEVFSWGSGANYQLGTGN---AHLQKLPCKVDSLHGFVIKLISAA--KFHSVAVTSLGEVYTWGYGRGGRLGHPDFDIHS 229 (1071)
Q Consensus 155 g~VYsWGsN~~GQLG~G~---~~~~~~P~~V~~l~~~~I~~Va~G--~~HslaLT~dG~Vy~WG~N~~GQLG~g~~~~~s 229 (1071)
|++...|.-..-+.|--+ ......|.++..+.+.+|..|+.| ..|+++|+-+|+.|.||+|..||||+++.
T Consensus 20 g~ml~~g~v~wd~tgkRd~~~~~NL~sphR~~~l~gv~iR~VasG~~aaH~vli~megk~~~wGRNekGQLGhgD~---- 95 (443)
T KOG1427|consen 20 GEMLFCGAVAWDITGKRDGAMEGNLVSPHRLRPLVGVNIRFVASGCAAAHCVLIDMEGKCYTWGRNEKGQLGHGDM---- 95 (443)
T ss_pred ccEEEeccchhhhhcccccccccccccceeccccccceEEEEecccchhhEEEEecccceeecccCccCccCccch----
Confidence 455555554444444322 223467889999999999999987 78999999999999999999999999965
Q ss_pred CCcceeeeeeeecCCCCCCEEEEEecCceEEEEEcCCcEEEEeCCCCCCcCCCCCC-CCCcceeeccCcccEEEEEEcCC
Q 001480 230 GQAAVITPRRVTSGLGSRRVKTIAAAKHHTVLATEGGEVFTWGSNREGQLGYTSVD-TQPTPRRVSSLKLKIIAVAAANK 308 (1071)
Q Consensus 230 ~~~~v~~P~~V~~~l~~~~Iv~IAcG~~HslaLT~dG~VyswG~N~~GQLG~g~~~-~~~~P~~V~~l~~~Iv~VacG~~ 308 (1071)
.....|+.|. .|...+|++.+||++|+++||++|+||+||.|.+||||+++.. ....|..+.-....|+.|+||..
T Consensus 96 --k~~e~Ptvi~-gL~~~~iv~AA~GrnHTl~ltdtG~v~afGeNK~GQlGlgn~~~~v~s~~~~~~~~~~v~~v~cga~ 172 (443)
T KOG1427|consen 96 --KQRERPTVIS-GLSKHKIVKAAAGRNHTLVLTDTGQVLAFGENKYGQLGLGNAKNEVESTPLPCVVSDEVTNVACGAD 172 (443)
T ss_pred --hhccCCchhh-hhhhhhHHHHhhccCcEEEEecCCcEEEecccccccccccccccccccCCCccccCccceeeccccc
Confidence 4556788887 8888999999999999999999999999999999999999644 34445555445568999999999
Q ss_pred ceeEEecCCcEEEEeCCCCCCcCCCCCCCC------------CcccceeeeccCCCCEEEEEecCCeEEEEeeCCcEEEE
Q 001480 309 HTAVVSESGEVFTWGCNREGQLGYGTSNSA------------SNYTPRVVESLKGKDLVGVAAAKYHTIVLGADGERVIV 376 (1071)
Q Consensus 309 HSlaLT~dG~VY~WG~N~~GQLG~g~~~~~------------~~~~P~~V~~l~~~~I~~IaaG~~htlaLt~dG~Vy~w 376 (1071)
+++.|+..+.+.++|.-.|||||+++.... ....|..|..+.+..|++++||.+||+++++++.||.|
T Consensus 173 ftv~l~~~~si~t~glp~ygqlgh~td~~~~~~~~~~~~~~e~~pr~~~i~~~dgvqiv~~acg~nhtvavd~nkrVysW 252 (443)
T KOG1427|consen 173 FTVWLSSTESILTAGLPQYGQLGHGTDNEFNMKDSSVRLAYEAQPRPKAIASLDGVQIVKVACGTNHTVAVDKNKRVYSW 252 (443)
T ss_pred eEEEeecccceeecCCccccccccCcchhhccccccceeeeecCCCccccccccceeeEEEeccCcceeeecCCccEEEe
Confidence 999999999999999999999999876432 13456677788899999999999999999999999999
Q ss_pred ecCCCCCCCc--------c--ceeccccCCcEEEEEeCCCcceEEecCCcEEEEeCCC----CCCceeeeeecCCceeEE
Q 001480 377 ARNLKKSGST--------P--LKFHRKIKLHVVSIAAGMVHSTALTEDGALFYWASSD----PDLRCQQLYSMCGRNVVS 442 (1071)
Q Consensus 377 G~n~~~~~~~--------p--~~~~~~~~~~I~~Ia~G~~hslaLt~dG~Vy~WG~n~----~~~~p~~v~~l~g~~Vv~ 442 (1071)
|-.-.+.... | +++......--.++.||+.+++.+.+-|.+|.||.+. ..+.|.++..+.+.++..
T Consensus 253 GFGGyGRLGHaEqKDEmvpRlik~Fd~~~rg~~~~~~g~t~Sl~v~e~G~Lf~~g~~k~~ge~~mypkP~~dlsgwnl~~ 332 (443)
T KOG1427|consen 253 GFGGYGRLGHAEQKDEMVPRLIKVFDRNNRGPPNAILGYTGSLNVAEGGQLFMWGKIKNNGEDWMYPKPMMDLSGWNLRW 332 (443)
T ss_pred ccccccccccccchhhHHHHHHHHhcCCCCCCcceeeecccceeecccceeEEeeccccCcccccCCCchhhcCCccCCC
Confidence 9875444331 2 2223333345568999999999999999999999764 347899999999999999
Q ss_pred EEeCCcEEEEEeeCCcEEEecCCCC--------CC-CCCceEEecCcc--cEEEEEecCCeEEEEEeCC
Q 001480 443 ISAGKYWTAAVTATGDVYMWDGKKS--------KD-NPPLVTRLHGIK--KATSVSVGETHLLIVGSLY 500 (1071)
Q Consensus 443 IaaG~~htlaLT~dG~Vy~WG~N~~--------~~-~~~~p~~v~g~~--~V~~Va~G~~HtlaL~s~~ 500 (1071)
+.||..|.++ ..|..+..||-... .| ....|..++-+. .|..|+||..|+++|+...
T Consensus 333 ~~~~~~h~~v-~ad~s~i~wg~~~~g~~lggp~~Qkss~~Pk~v~~l~~i~v~~VamGysHs~vivd~t 400 (443)
T KOG1427|consen 333 MDSGSMHHFV-GADSSCISWGHAQYGELLGGPNGQKSSAAPKKVDMLEGIHVMGVAMGYSHSMVIVDRT 400 (443)
T ss_pred cCccceeeee-cccccccccccccccccccCccccccccCccccchhcceeccceeeccceEEEEEccc
Confidence 9999999765 56778999985432 11 223345554433 5778999999999998763
No 4
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=100.00 E-value=5.8e-36 Score=337.41 Aligned_cols=315 Identities=23% Similarity=0.359 Sum_probs=252.8
Q ss_pred CceEEEEecCCcEEEEecCCCCCCCCCCCccCCCCcceeeeeeeecCC-CCCCEEEEEecCceEEEEEcCCcEEEEeCCC
Q 001480 197 KFHSVAVTSLGEVYTWGYGRGGRLGHPDFDIHSGQAAVITPRRVTSGL-GSRRVKTIAAAKHHTVLATEGGEVFTWGSNR 275 (1071)
Q Consensus 197 ~~HslaLT~dG~Vy~WG~N~~GQLG~g~~~~~s~~~~v~~P~~V~~~l-~~~~Iv~IAcG~~HslaLT~dG~VyswG~N~ 275 (1071)
..|...++.-..||+||.|..++||.+.. ...+..|++.+... ....|++++||..|+++|++||+||+||.|.
T Consensus 58 ~~~~~~~~~~~~v~~~Gsn~~~eLGlg~d-----e~~~~~P~~~~~~~~d~~~i~~~acGg~hsl~ld~Dg~lyswG~N~ 132 (476)
T COG5184 58 NKHTHLLVKMASVYSWGSNGMNELGLGND-----ETKVDRPQLNPFGRIDKASIIKIACGGNHSLGLDHDGNLYSWGDND 132 (476)
T ss_pred ccchhhhhheeeeEEEecCcceeeccCCc-----hhcccCceecCcccccceeeEEeecCCceEEeecCCCCEEEeccCc
Confidence 45666888899999999999999999854 22367788776221 4568999999999999999999999999999
Q ss_pred CCCcCCCCC----------------CCCCcceeeccCc-----ccEEEEEEcCCceeEEecCCcEEEEeCCCCCCcCCCC
Q 001480 276 EGQLGYTSV----------------DTQPTPRRVSSLK-----LKIIAVAAANKHTAVVSESGEVFTWGCNREGQLGYGT 334 (1071)
Q Consensus 276 ~GQLG~g~~----------------~~~~~P~~V~~l~-----~~Iv~VacG~~HSlaLT~dG~VY~WG~N~~GQLG~g~ 334 (1071)
.|+||.... ....+|..|.... .+|++++||++++++++++|+||.||.+..+.++.+.
T Consensus 133 ~G~Lgr~~~~~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~cg~e~svil~~~G~V~~~gt~r~~e~~~g~ 212 (476)
T COG5184 133 DGALGRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTFRCGELGQGS 212 (476)
T ss_pred ccccccccccccccccccccccchhhcccCCceeeccccccCChheEEeecCCceEEEEccCCcEEEecCcccccccccc
Confidence 999998651 1245788887622 3799999999999999999999999999999998885
Q ss_pred CCCCCc----ccceeeeccCCCCEEEEEecCCeEEEEeeCCcEEEEecCCCCCCCcccee--------cccc-CCcEEEE
Q 001480 335 SNSASN----YTPRVVESLKGKDLVGVAAAKYHTIVLGADGERVIVARNLKKSGSTPLKF--------HRKI-KLHVVSI 401 (1071)
Q Consensus 335 ~~~~~~----~~P~~V~~l~~~~I~~IaaG~~htlaLt~dG~Vy~wG~n~~~~~~~p~~~--------~~~~-~~~I~~I 401 (1071)
...... ++|..+. ...|+++++|.+|.++|+.+|++|.||.+..++...|+.. ..+. -..|..|
T Consensus 213 ~~~s~k~~~~~~p~~v~---~~~i~qla~G~dh~i~lt~~G~vy~~Gs~qkgqlG~~~~e~~~~~~lv~~~f~i~~i~~v 289 (476)
T COG5184 213 YKNSQKTSIQFTPLKVP---KKAIVQLAAGADHLIALTNEGKVYGWGSNQKGQLGRPTSERLKLVVLVGDPFAIRNIKYV 289 (476)
T ss_pred ccccccceeeeeeeecC---chheeeeccCCceEEEEecCCcEEEecCCcccccCCchhhhcccccccCChhhhhhhhhc
Confidence 444333 4555554 4579999999999999999999999999987776654211 1111 1147889
Q ss_pred EeCCCcceEEecCCcEEEEeCCCCCC--------------ceeeeeecCCceeEEEEeCCcEEEEEeeCCcEEEecCCCC
Q 001480 402 AAGMVHSTALTEDGALFYWASSDPDL--------------RCQQLYSMCGRNVVSISAGKYWTAAVTATGDVYMWDGKKS 467 (1071)
Q Consensus 402 a~G~~hslaLt~dG~Vy~WG~n~~~~--------------~p~~v~~l~g~~Vv~IaaG~~htlaLT~dG~Vy~WG~N~~ 467 (1071)
+||.+|+++|+++|.+|+||.|-.+. .+.....+.+..|..|++|..|+++|..+|.||.||.+..
T Consensus 290 acG~~h~~al~~~G~i~a~G~n~fgqlg~~~~~~~~a~~tk~~~~~~~~~~~i~~is~ge~H~l~L~~~G~l~a~Gr~~~ 369 (476)
T COG5184 290 ACGKDHSLALDEDGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQLLSGVTICSISAGESHSLILRKDGTLYAFGRGDR 369 (476)
T ss_pred ccCcceEEEEcCCCeEEEeccchhcccccCcccccceeeccccccccCCCceEEEEecCcceEEEEecCceEEEecCCcc
Confidence 99999999999999999999874332 2333344566679999999999999999999999998875
Q ss_pred CC---------CCCceEEecCcccEEEEEecCCeEEEEEeCCCCccCCCCCCCCCccccCCC
Q 001480 468 KD---------NPPLVTRLHGIKKATSVSVGETHLLIVGSLYHPIYPPNVAKNPQKLKLNGR 520 (1071)
Q Consensus 468 ~~---------~~~~p~~v~g~~~V~~Va~G~~HtlaL~s~~~~v~~wG~~~~gq~g~~~~~ 520 (1071)
++ ..+.|..+.....+.+|+||..|+++.+.. +.+|+||++++|+++.....
T Consensus 370 ~qlg~~~~~~~~~~~~~~ls~~~~~~~v~~gt~~~~~~t~~-gsvy~wG~ge~gnlG~g~~~ 430 (476)
T COG5184 370 GQLGIQEEITIDVSTPTKLSVAIKLEQVACGTHHNIARTDD-GSVYSWGWGEHGNLGNGPKE 430 (476)
T ss_pred ccccCcccceeecCCccccccccceEEEEecCccceeeccC-CceEEecCchhhhccCCchh
Confidence 44 345566677677899999999999999988 59999999999999855544
No 5
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown]
Probab=100.00 E-value=1.2e-34 Score=306.92 Aligned_cols=292 Identities=20% Similarity=0.353 Sum_probs=244.1
Q ss_pred ceeeeccCCcccccCCCCcccccCCceeccCCCceEEEEecCCceEEEEecCCcEEEEecCCCCCCCCCCCccCCCCcce
Q 001480 155 TEVFSWGSGANYQLGTGNAHLQKLPCKVDSLHGFVIKLISAAKFHSVAVTSLGEVYTWGYGRGGRLGHPDFDIHSGQAAV 234 (1071)
Q Consensus 155 g~VYsWGsN~~GQLG~G~~~~~~~P~~V~~l~~~~I~~Va~G~~HslaLT~dG~Vy~WG~N~~GQLG~g~~~~~s~~~~v 234 (1071)
+++|+||.|..||||+|+..-...|+.|+.|...+|++-+||.+|+++||++|+||+||.|.+||||.+.... .+
T Consensus 77 gk~~~wGRNekGQLGhgD~k~~e~Ptvi~gL~~~~iv~AA~GrnHTl~ltdtG~v~afGeNK~GQlGlgn~~~-----~v 151 (443)
T KOG1427|consen 77 GKCYTWGRNEKGQLGHGDMKQRERPTVISGLSKHKIVKAAAGRNHTLVLTDTGQVLAFGENKYGQLGLGNAKN-----EV 151 (443)
T ss_pred cceeecccCccCccCccchhhccCCchhhhhhhhhHHHHhhccCcEEEEecCCcEEEeccccccccccccccc-----cc
Confidence 7999999999999999988888999999999999999999999999999999999999999999999996522 23
Q ss_pred eeeeeeecCCCCCCEEEEEecCceEEEEEcCCcEEEEeCCCCCCcCCCCC--------------CCCCcceeeccCc-cc
Q 001480 235 ITPRRVTSGLGSRRVKTIAAAKHHTVLATEGGEVFTWGSNREGQLGYTSV--------------DTQPTPRRVSSLK-LK 299 (1071)
Q Consensus 235 ~~P~~V~~~l~~~~Iv~IAcG~~HslaLT~dG~VyswG~N~~GQLG~g~~--------------~~~~~P~~V~~l~-~~ 299 (1071)
..|..+. .-...|..|+||..+++.|+..+.+.++|.-.|||||+++. ..++.|..|..+. ..
T Consensus 152 ~s~~~~~--~~~~~v~~v~cga~ftv~l~~~~si~t~glp~ygqlgh~td~~~~~~~~~~~~~~e~~pr~~~i~~~dgvq 229 (443)
T KOG1427|consen 152 ESTPLPC--VVSDEVTNVACGADFTVWLSSTESILTAGLPQYGQLGHGTDNEFNMKDSSVRLAYEAQPRPKAIASLDGVQ 229 (443)
T ss_pred ccCCCcc--ccCccceeeccccceEEEeecccceeecCCccccccccCcchhhccccccceeeeecCCCcccccccccee
Confidence 3333322 23468999999999999999999999999999999999852 2345666676665 68
Q ss_pred EEEEEEcCCceeEEecCCcEEEEeCCCCCCcCCCCCCCCCcccceeeecc--CCCCEEEEEecCCeEEEEeeCCcEEEEe
Q 001480 300 IIAVAAANKHTAVVSESGEVFTWGCNREGQLGYGTSNSASNYTPRVVESL--KGKDLVGVAAAKYHTIVLGADGERVIVA 377 (1071)
Q Consensus 300 Iv~VacG~~HSlaLT~dG~VY~WG~N~~GQLG~g~~~~~~~~~P~~V~~l--~~~~I~~IaaG~~htlaLt~dG~Vy~wG 377 (1071)
|++++||.+||++++++++||+||.+-||.||+....+ ...|++|..| .+.--.++.||..+++.+.+-|.+|.||
T Consensus 230 iv~~acg~nhtvavd~nkrVysWGFGGyGRLGHaEqKD--EmvpRlik~Fd~~~rg~~~~~~g~t~Sl~v~e~G~Lf~~g 307 (443)
T KOG1427|consen 230 IVKVACGTNHTVAVDKNKRVYSWGFGGYGRLGHAEQKD--EMVPRLIKVFDRNNRGPPNAILGYTGSLNVAEGGQLFMWG 307 (443)
T ss_pred eEEEeccCcceeeecCCccEEEeccccccccccccchh--hHHHHHHHHhcCCCCCCcceeeecccceeecccceeEEee
Confidence 99999999999999999999999999999999976543 6789888765 3455678999999999999999999999
Q ss_pred cCCCC--CCCccceeccccCCcEEEEEeCCCcceEEecCCcEEEEeCCCC------------CCceeeeeecCCceeEEE
Q 001480 378 RNLKK--SGSTPLKFHRKIKLHVVSIAAGMVHSTALTEDGALFYWASSDP------------DLRCQQLYSMCGRNVVSI 443 (1071)
Q Consensus 378 ~n~~~--~~~~p~~~~~~~~~~I~~Ia~G~~hslaLt~dG~Vy~WG~n~~------------~~~p~~v~~l~g~~Vv~I 443 (1071)
.+.+. .-..|-++..+.+.++..+.||..|.++ ..|..+..||..-. ...|..+..+.+..|..|
T Consensus 308 ~~k~~ge~~mypkP~~dlsgwnl~~~~~~~~h~~v-~ad~s~i~wg~~~~g~~lggp~~Qkss~~Pk~v~~l~~i~v~~V 386 (443)
T KOG1427|consen 308 KIKNNGEDWMYPKPMMDLSGWNLRWMDSGSMHHFV-GADSSCISWGHAQYGELLGGPNGQKSSAAPKKVDMLEGIHVMGV 386 (443)
T ss_pred ccccCcccccCCCchhhcCCccCCCcCccceeeee-cccccccccccccccccccCccccccccCccccchhcceeccce
Confidence 87443 3345666777788899999999999875 45668889986531 134667777888899999
Q ss_pred EeCCcEEEEEeeC
Q 001480 444 SAGKYWTAAVTAT 456 (1071)
Q Consensus 444 aaG~~htlaLT~d 456 (1071)
++|+.|+++|.++
T Consensus 387 amGysHs~vivd~ 399 (443)
T KOG1427|consen 387 AMGYSHSMVIVDR 399 (443)
T ss_pred eeccceEEEEEcc
Confidence 9999999998654
No 6
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.98 E-value=9e-33 Score=320.86 Aligned_cols=378 Identities=25% Similarity=0.350 Sum_probs=281.2
Q ss_pred CCCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccC-CCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCccccc
Q 001480 25 GGVQKDLCLAVREGSLADVESALALLKKNGGNINSRN-IFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLH 103 (1071)
Q Consensus 25 ~~g~TpLh~Aa~~G~~~~v~~lL~lLl~~GadiN~~d-~~G~TpLH~Aa~~g~~eivk~LL~~GAd~n~~d~~~G~TpL~ 103 (1071)
.-|.|+||+|+..+...+++ .|+.+|+|++.+| ..|+||||-|..+|+++|+-+||++|+.+.++| +.|.+||+
T Consensus 50 ~~GR~alH~~~S~~k~~~l~----wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~D-keglsplq 124 (1267)
T KOG0783|consen 50 RYGRTALHIAVSENKNSFLR----WLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKD-KEGLSPLQ 124 (1267)
T ss_pred hhccceeeeeeccchhHHHH----HHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEec-ccCCCHHH
Confidence 34678899999999999888 7888999999999 669999999999999999999999999999999 89999999
Q ss_pred cccccccccch------hhhhcccccccc-------ccCCCCCCcccCCCC---ceeeecccccccc----ceeeeccCC
Q 001480 104 RALHFGHLAVA------SVLLQSGASITL-------EDCKSRTPVDLLSGP---VLQVVGSGYNSVA----TEVFSWGSG 163 (1071)
Q Consensus 104 ~A~~~g~~~vv------~lLl~~Ga~v~l-------~d~~G~tpLdl~sg~---v~qa~~~~~~~~~----g~VYsWGsN 163 (1071)
.-++-....+. .-++..|-+.|. ........+||.+-. ..|+..+.+|++- |+||++|.+
T Consensus 125 ~~~r~~~~~i~~~~d~pndvy~wG~N~N~tLGign~~~~~~Pe~Vdlf~~Sg~~~~qV~l~kfHSvfl~~kgqvY~cGhG 204 (1267)
T KOG0783|consen 125 FLSRVLSSTIHPVLDLPNDVYGWGTNVNNTLGIGNGKEPSSPERVDLFKTSGQLFSQVQLSKFHSVFLTEKGQVYVCGHG 204 (1267)
T ss_pred HHhhccccccccccCCccceeEecccccccccccCCCCCCChHHhHHHHhccHHHHHHHHhhceeeEecCCCcEEEeccC
Confidence 88763222211 112223433331 111222336775532 3455555555554 799999999
Q ss_pred cccccCCCCcccccCCceeccCCCceEEEEecCCceEEEEecCCcEEEEecCCCCCCCCCCCccCCCCcceeeeeeeecC
Q 001480 164 ANYQLGTGNAHLQKLPCKVDSLHGFVIKLISAAKFHSVAVTSLGEVYTWGYGRGGRLGHPDFDIHSGQAAVITPRRVTSG 243 (1071)
Q Consensus 164 ~~GQLG~G~~~~~~~P~~V~~l~~~~I~~Va~G~~HslaLT~dG~Vy~WG~N~~GQLG~g~~~~~s~~~~v~~P~~V~~~ 243 (1071)
..|+||.|+.....+|.+|+.|.+.+|.+|++...|+++||.+|-||+||.|.++|||..+....-......+++++.
T Consensus 205 ~GGRlG~gdeq~~~iPkrV~gL~gh~~~qisvs~~HslvLT~~g~Vys~GlN~~hqLG~~~~~~~~~~p~qI~a~r~k-- 282 (1267)
T KOG0783|consen 205 AGGRLGFGDEQYNFIPKRVPGLIGHKVIQISVSHTHSLVLTKFGSVYSWGLNGSHQLGLSNDELKKDDPIQITARRIK-- 282 (1267)
T ss_pred CCCccCcCcccccccccccccccccceEEEEeecceeEEEeecceEEEeecCcccccCCcCchhhcCchhhhhhHhhc--
Confidence 999999999888999999999999999999999999999999999999999999999998653333333444444444
Q ss_pred CCCCCEEEEEecCceEEEEEcCCcEEEEeCCCCCCcCCCCC-CCCCcceeeccCcccEEEEEEcCCceeEEecCCcEEEE
Q 001480 244 LGSRRVKTIAAAKHHTVLATEGGEVFTWGSNREGQLGYTSV-DTQPTPRRVSSLKLKIIAVAAANKHTAVVSESGEVFTW 322 (1071)
Q Consensus 244 l~~~~Iv~IAcG~~HslaLT~dG~VyswG~N~~GQLG~g~~-~~~~~P~~V~~l~~~Iv~VacG~~HSlaLT~dG~VY~W 322 (1071)
+...|+.|++|..|+++-|+. .||+||.| .||||..+. ....+|+.+......|..|+|...-|++++++|.+|++
T Consensus 283 -g~~~iIgvaAg~~hsVawt~~-~VY~wGlN-~GQlGi~~n~~~Vt~Pr~l~~~~~~v~~v~a~~~ATVc~~~~~~i~~~ 359 (1267)
T KOG0783|consen 283 -GFKQIIGVAAGKSHSVAWTDT-DVYSWGLN-NGQLGISDNISVVTTPRRLAGLLSPVIHVVATTRATVCLLQNNSIIAF 359 (1267)
T ss_pred -chhhhhhhhcccceeeeeecc-eEEEeccc-CceecCCCCCceeecchhhcccccceEEEEecCccEEEEecCCcEEEE
Confidence 224899999999999999965 59999998 699998754 44678888877778899999999999999999999999
Q ss_pred eCCCCCCcCCCCCCCCCcccceeeec----cCCCCEEEEEecCCeEEEEeeCCcEEEEecCCCCCCCccceeccccCCcE
Q 001480 323 GCNREGQLGYGTSNSASNYTPRVVES----LKGKDLVGVAAAKYHTIVLGADGERVIVARNLKKSGSTPLKFHRKIKLHV 398 (1071)
Q Consensus 323 G~N~~GQLG~g~~~~~~~~~P~~V~~----l~~~~I~~IaaG~~htlaLt~dG~Vy~wG~n~~~~~~~p~~~~~~~~~~I 398 (1071)
-.-..-.+-.... ...-..|.. +.-.++....+....-+++|.-|.||+|-.+...... ..+..+.-..|
T Consensus 360 ady~~~k~~~n~~----~lks~~V~gg~l~~~~~~~~k~~a~~~kll~lte~g~Vy~w~s~ns~~~~--c~ftp~r~~~i 433 (1267)
T KOG0783|consen 360 ADYNQVKLPFNVD----FLKSLKVTGGPLSLTRFNVRKLLASENKLLVLTELGEVYEWDSKNSTRTS--CKFTPLRIFEI 433 (1267)
T ss_pred ecccceecCcchh----ccceeEEecCccchhhhhhhhcchhhhheeeeccCCeEEEEecCCCceee--eecccceeeeh
Confidence 6432222211110 111122221 0112456777788888999999999999876433222 22222222356
Q ss_pred EEEEeCCCcceEEecCCcEE
Q 001480 399 VSIAAGMVHSTALTEDGALF 418 (1071)
Q Consensus 399 ~~Ia~G~~hslaLt~dG~Vy 418 (1071)
.+|+--.+..+++|+||..|
T Consensus 434 sdIa~~~N~~~~~t~dGc~~ 453 (1267)
T KOG0783|consen 434 SDIAWTANSLILCTRDGCWK 453 (1267)
T ss_pred hhhhhccceEEEEecCccee
Confidence 78888888999999999443
No 7
>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=6.6e-19 Score=176.87 Aligned_cols=125 Identities=28% Similarity=0.331 Sum_probs=111.7
Q ss_pred CHHHHHhCCCCccccCCccccCCCCCCchHHHHHHHcCCHHHHHHHHHHHHhC-CCCCcccCCCCCcHHHHHHhcCCHHH
Q 001480 1 MTELLVSHHGQKQTLQSPARKSSLGGVQKDLCLAVREGSLADVESALALLKKN-GGNINSRNIFGLTPLHSAIWRNQVPI 79 (1071)
Q Consensus 1 Ive~LL~~ga~~~~~~~~~~~~~~~~g~TpLh~Aa~~G~~~~v~~lL~lLl~~-GadiN~~d~~G~TpLH~Aa~~g~~ei 79 (1071)
|++|||+....+.+ . -+..||||||.||..|+.++|+ .|+.. |+|+|..+..|+|+||||+..|+.+|
T Consensus 53 iv~fLlsq~nv~~d-----d--kDdaGWtPlhia~s~g~~evVk----~Ll~r~~advna~tn~G~T~LHyAagK~r~eI 121 (226)
T KOG4412|consen 53 IVYFLLSQPNVKPD-----D--KDDAGWTPLHIAASNGNDEVVK----ELLNRSGADVNATTNGGQTCLHYAAGKGRLEI 121 (226)
T ss_pred HHHHHHhcCCCCCC-----C--ccccCCchhhhhhhcCcHHHHH----HHhcCCCCCcceecCCCcceehhhhcCChhhH
Confidence 57899984333222 1 1568999999999999999999 55555 99999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCCCCCCccccccccccccccchhhhhccccccccccCCCCCCccc
Q 001480 80 VRRLLAAGADPDARDGESGWSSLHRALHFGHLAVASVLLQSGASITLEDCKSRTPVDL 137 (1071)
Q Consensus 80 vk~LL~~GAd~n~~d~~~G~TpL~~A~~~g~~~vv~lLl~~Ga~v~l~d~~G~tpLdl 137 (1071)
+++|+++|+.++++| ..|.||||.|+..|.++++++|+..|+.+|..|..|+||+.+
T Consensus 122 aqlLle~ga~i~~kD-~~~qtplHRAAavGklkvie~Li~~~a~~n~qDk~G~TpL~~ 178 (226)
T KOG4412|consen 122 AQLLLEKGALIRIKD-KQGQTPLHRAAAVGKLKVIEYLISQGAPLNTQDKYGFTPLHH 178 (226)
T ss_pred HHHHHhcCCCCcccc-cccCchhHHHHhccchhhHHHHHhcCCCCCcccccCccHHHH
Confidence 999999999999999 899999999999999999999999999999999999999866
No 8
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=99.70 E-value=1.5e-16 Score=191.17 Aligned_cols=171 Identities=32% Similarity=0.491 Sum_probs=135.8
Q ss_pred CceeccCCCceEEEEecCCceEEEEecCCcEEEEecCCCCCCCCCCCccC------C-----------------------
Q 001480 179 PCKVDSLHGFVIKLISAAKFHSVAVTSLGEVYTWGYGRGGRLGHPDFDIH------S----------------------- 229 (1071)
Q Consensus 179 P~~V~~l~~~~I~~Va~G~~HslaLT~dG~Vy~WG~N~~GQLG~g~~~~~------s----------------------- 229 (1071)
-+.+..|++.-|.+++.|..|+++++.+|+||+||.|+.+|+|.-..... +
T Consensus 604 Sqmln~L~~~~isslAlGKsH~~av~rNG~l~T~GlNN~~QCGRVEs~sTt~s~~~s~~~e~~iCP~G~HtW~~dt~~VC 683 (3738)
T KOG1428|consen 604 SQMLNGLDNVMISSLALGKSHGVAVTRNGHLFTWGLNNMNQCGRVESTSTTSSPRHSGRQEYQICPIGEHTWLTDTPSVC 683 (3738)
T ss_pred HHHhhccccceeehhhccccceeEEEeCCeEEEEecCCcccccccccccccCCcccccceeecccCCccceeecCCcchh
Confidence 45677888999999999999999999999999999999999997421000 0
Q ss_pred ---------C-------------------------------------------------------Ccceeeeeeee--cC
Q 001480 230 ---------G-------------------------------------------------------QAAVITPRRVT--SG 243 (1071)
Q Consensus 230 ---------~-------------------------------------------------------~~~v~~P~~V~--~~ 243 (1071)
+ +.....|.+|. .+
T Consensus 684 a~CG~Cs~~GvaC~~~~RP~G~mC~CG~GES~C~~CG~Cr~C~e~tE~~QPG~aqHvQ~~staa~QR~~~HPs~V~~sq~ 763 (3738)
T KOG1428|consen 684 AQCGLCSARGVACGRVPRPKGTMCHCGVGESTCLRCGLCRPCGEVTEPAQPGRAQHVQFSSTAAPQRSTLHPSRVILSQG 763 (3738)
T ss_pred hhcccccccccccccCCCCCCcccccCCCcccceeccccccccCcCCcCCCCHHHhheecccccccccccCchheeeccC
Confidence 0 00011122221 01
Q ss_pred CCCCCEEEEEecCceEEEEEcCCcEEEEeCCCCCCcCCCCCCCCCcceeeccCcc-cEEEEEEcCCceeEEecCCcEEEE
Q 001480 244 LGSRRVKTIAAAKHHTVLATEGGEVFTWGSNREGQLGYTSVDTQPTPRRVSSLKL-KIIAVAAANKHTAVVSESGEVFTW 322 (1071)
Q Consensus 244 l~~~~Iv~IAcG~~HslaLT~dG~VyswG~N~~GQLG~g~~~~~~~P~~V~~l~~-~Iv~VacG~~HSlaLT~dG~VY~W 322 (1071)
....++.+|+||.+|+++|.+|++||+||.|.+||||+|+.....+|++|..+.. .|++|++|.+||+++..||.||+|
T Consensus 764 ~Hdvkv~sVSCG~~HtVlL~sd~~VfTFG~~~HGQLG~GDt~Sk~~Pq~V~~~~~t~~vQVaAGSNHT~l~~~DGsVFTF 843 (3738)
T KOG1428|consen 764 PHDVKVSSVSCGNFHTVLLASDRRVFTFGSNCHGQLGVGDTLSKNTPQQVILPSDTVIVQVAAGSNHTILRANDGSVFTF 843 (3738)
T ss_pred CcceeEEEEeccCceEEEEecCCcEEEecCCcccccCcCccccCCCcceEEcCCCCceEEEecCCCceEEEecCCcEEEe
Confidence 1244899999999999999999999999999999999999999999999987764 799999999999999999999999
Q ss_pred eCCCCCCcCCCCCCC-CCcccceeeecc
Q 001480 323 GCNREGQLGYGTSNS-ASNYTPRVVESL 349 (1071)
Q Consensus 323 G~N~~GQLG~g~~~~-~~~~~P~~V~~l 349 (1071)
|.-..|||++..... .-...|..|..+
T Consensus 844 GaF~KGQL~RP~~e~~~WNA~Pe~v~~~ 871 (3738)
T KOG1428|consen 844 GAFGKGQLARPAGEKAGWNAIPEKVSGF 871 (3738)
T ss_pred ccccCccccCccccccccccCCCcCCCC
Confidence 999999999865432 224567777655
No 9
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=99.70 E-value=2.9e-16 Score=188.74 Aligned_cols=183 Identities=30% Similarity=0.400 Sum_probs=142.5
Q ss_pred CceEEEEecCCceEEEEecCCcEEEEecCCCCCCCCCCCccCCCCcce-eeeeeeecCCCCCCEEEEEecCceEEEEEcC
Q 001480 187 GFVIKLISAAKFHSVAVTSLGEVYTWGYGRGGRLGHPDFDIHSGQAAV-ITPRRVTSGLGSRRVKTIAAAKHHTVLATEG 265 (1071)
Q Consensus 187 ~~~I~~Va~G~~HslaLT~dG~Vy~WG~N~~GQLG~g~~~~~s~~~~v-~~P~~V~~~l~~~~Iv~IAcG~~HslaLT~d 265 (1071)
..+|+.|.+...---.+.+||++|..|.... .+ .....+. ++.+.-|.+++.|..|+++++.+
T Consensus 568 ~rKIv~v~~s~~VY~~vSenGkifM~G~~tm---------------~~n~SSqmln-~L~~~~isslAlGKsH~~av~rN 631 (3738)
T KOG1428|consen 568 RRKIVHVCASGHVYGYVSENGKIFMGGLHTM---------------RVNVSSQMLN-GLDNVMISSLALGKSHGVAVTRN 631 (3738)
T ss_pred cceeEEEeeeeEEEEEEccCCeEEeecceeE---------------EecchHHHhh-ccccceeehhhccccceeEEEeC
Confidence 3578888765555557899999999984221 01 0111233 67778899999999999999999
Q ss_pred CcEEEEeCCCCCCcCCCCCC------------------------------------------------------------
Q 001480 266 GEVFTWGSNREGQLGYTSVD------------------------------------------------------------ 285 (1071)
Q Consensus 266 G~VyswG~N~~GQLG~g~~~------------------------------------------------------------ 285 (1071)
|.||+||-|..+|+|.-...
T Consensus 632 G~l~T~GlNN~~QCGRVEs~sTt~s~~~s~~~e~~iCP~G~HtW~~dt~~VCa~CG~Cs~~GvaC~~~~RP~G~mC~CG~ 711 (3738)
T KOG1428|consen 632 GHLFTWGLNNMNQCGRVESTSTTSSPRHSGRQEYQICPIGEHTWLTDTPSVCAQCGLCSARGVACGRVPRPKGTMCHCGV 711 (3738)
T ss_pred CeEEEEecCCcccccccccccccCCcccccceeecccCCccceeecCCcchhhhcccccccccccccCCCCCCcccccCC
Confidence 99999999999998742100
Q ss_pred --------------------------------CCCccee-------eccC----cccEEEEEEcCCceeEEecCCcEEEE
Q 001480 286 --------------------------------TQPTPRR-------VSSL----KLKIIAVAAANKHTAVVSESGEVFTW 322 (1071)
Q Consensus 286 --------------------------------~~~~P~~-------V~~l----~~~Iv~VacG~~HSlaLT~dG~VY~W 322 (1071)
....|.+ |..- ..++.+|+||++|+++|-+|++||+|
T Consensus 712 GES~C~~CG~Cr~C~e~tE~~QPG~aqHvQ~~staa~QR~~~HPs~V~~sq~~Hdvkv~sVSCG~~HtVlL~sd~~VfTF 791 (3738)
T KOG1428|consen 712 GESTCLRCGLCRPCGEVTEPAQPGRAQHVQFSSTAAPQRSTLHPSRVILSQGPHDVKVSSVSCGNFHTVLLASDRRVFTF 791 (3738)
T ss_pred CcccceeccccccccCcCCcCCCCHHHhheecccccccccccCchheeeccCCcceeEEEEeccCceEEEEecCCcEEEe
Confidence 0001111 1100 24789999999999999999999999
Q ss_pred eCCCCCCcCCCCCCCCCcccceeeeccCCCCEEEEEecCCeEEEEeeCCcEEEEecCCCCCCCcc
Q 001480 323 GCNREGQLGYGTSNSASNYTPRVVESLKGKDLVGVAAAKYHTIVLGADGERVIVARNLKKSGSTP 387 (1071)
Q Consensus 323 G~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~I~~IaaG~~htlaLt~dG~Vy~wG~n~~~~~~~p 387 (1071)
|.|.+||||.|+..+ ..+|+.|..+.+..|++|++|.+||+++..||.||.+|.-.+++...|
T Consensus 792 G~~~HGQLG~GDt~S--k~~Pq~V~~~~~t~~vQVaAGSNHT~l~~~DGsVFTFGaF~KGQL~RP 854 (3738)
T KOG1428|consen 792 GSNCHGQLGVGDTLS--KNTPQQVILPSDTVIVQVAAGSNHTILRANDGSVFTFGAFGKGQLARP 854 (3738)
T ss_pred cCCcccccCcCcccc--CCCcceEEcCCCCceEEEecCCCceEEEecCCcEEEeccccCccccCc
Confidence 999999999999875 568999999999999999999999999999999999998877766544
No 10
>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=3e-17 Score=165.02 Aligned_cols=127 Identities=29% Similarity=0.428 Sum_probs=112.8
Q ss_pred CHHHHHhCCCCccccCCccccCCCCCCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHH
Q 001480 1 MTELLVSHHGQKQTLQSPARKSSLGGVQKDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIV 80 (1071)
Q Consensus 1 Ive~LL~~ga~~~~~~~~~~~~~~~~g~TpLh~Aa~~G~~~~v~~lL~lLl~~GadiN~~d~~G~TpLH~Aa~~g~~eiv 80 (1071)
||+.|+.+.+.+.|.. .+.|.|+|||||-.|.+++++ +|+++|+.|+.+|..|.||||-|+.-|.+++|
T Consensus 87 vVk~Ll~r~~advna~-------tn~G~T~LHyAagK~r~eIaq----lLle~ga~i~~kD~~~qtplHRAAavGklkvi 155 (226)
T KOG4412|consen 87 VVKELLNRSGADVNAT-------TNGGQTCLHYAAGKGRLEIAQ----LLLEKGALIRIKDKQGQTPLHRAAAVGKLKVI 155 (226)
T ss_pred HHHHHhcCCCCCccee-------cCCCcceehhhhcCChhhHHH----HHHhcCCCCcccccccCchhHHHHhccchhhH
Confidence 4788888744433332 456789999999999999999 99999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCCCCCCccccccccccccccchhhhhccccccccccCCCCCCcccCCC
Q 001480 81 RRLLAAGADPDARDGESGWSSLHRALHFGHLAVASVLLQSGASITLEDCKSRTPVDLLSG 140 (1071)
Q Consensus 81 k~LL~~GAd~n~~d~~~G~TpL~~A~~~g~~~vv~lLl~~Ga~v~l~d~~G~tpLdl~sg 140 (1071)
++|+..|+.+|.+| ..|+||||.|.-.||.+++.+|+++|++....|.+| |++....+
T Consensus 156 e~Li~~~a~~n~qD-k~G~TpL~~al~e~~~d~a~lLV~~gAd~~~edke~-t~~~~a~~ 213 (226)
T KOG4412|consen 156 EYLISQGAPLNTQD-KYGFTPLHHALAEGHPDVAVLLVRAGADTDREDKEG-TALRIACN 213 (226)
T ss_pred HHHHhcCCCCCccc-ccCccHHHHHHhccCchHHHHHHHhccceeeccccC-chHHHHHH
Confidence 99999999999999 899999999988899999999999999999999988 87654433
No 11
>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]
Probab=99.65 E-value=1.3e-16 Score=186.48 Aligned_cols=125 Identities=32% Similarity=0.419 Sum_probs=98.3
Q ss_pred CHHHHHhCCCCccccCCccccCCCCCCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHH
Q 001480 1 MTELLVSHHGQKQTLQSPARKSSLGGVQKDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIV 80 (1071)
Q Consensus 1 Ive~LL~~ga~~~~~~~~~~~~~~~~g~TpLh~Aa~~G~~~~v~~lL~lLl~~GadiN~~d~~G~TpLH~Aa~~g~~eiv 80 (1071)
|++|||++||+++.+... -+.||||+||++|++.+|. +|+++|||++.+|..|.||||+||..++..+|
T Consensus 93 v~r~li~~gadvn~~gG~-------l~stPLHWAar~G~~~vv~----lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~v 161 (600)
T KOG0509|consen 93 VARYLISHGADVNAIGGV-------LGSTPLHWAARNGHISVVD----LLLQHGADPTLKDKQGLTPLHLAAQFGHTALV 161 (600)
T ss_pred HHHHHHHcCCCccccCCC-------CCCCcchHHHHcCcHHHHH----HHHHcCCCCceecCCCCcHHHHHHHhCchHHH
Confidence 467888888887765432 2346788888888888888 77788888888888888888888888888888
Q ss_pred HHHHhcCCCCCCCCCCCCccccccccccccccchhhhhcccccccccc-CCCCCCccc
Q 001480 81 RRLLAAGADPDARDGESGWSSLHRALHFGHLAVASVLLQSGASITLED-CKSRTPVDL 137 (1071)
Q Consensus 81 k~LL~~GAd~n~~d~~~G~TpL~~A~~~g~~~vv~lLl~~Ga~v~l~d-~~G~tpLdl 137 (1071)
-+||..|+|+|.+| .+|+||||+|+++|+...+.+|+..|+++...| .+|.||+++
T Consensus 162 ayll~~~~d~d~~D-~~grTpLmwAaykg~~~~v~~LL~f~a~~~~~d~~~g~TpLHw 218 (600)
T KOG0509|consen 162 AYLLSKGADIDLRD-NNGRTPLMWAAYKGFALFVRRLLKFGASLLLTDDNHGNTPLHW 218 (600)
T ss_pred HHHHHhcccCCCcC-CCCCCHHHHHHHhcccHHHHHHHHhcccccccccccCCchHHH
Confidence 88888888888888 778888888888887777778888888888777 678888765
No 12
>PHA02859 ankyrin repeat protein; Provisional
Probab=99.63 E-value=5.4e-16 Score=165.94 Aligned_cols=127 Identities=14% Similarity=0.135 Sum_probs=96.6
Q ss_pred CHHHHHhCCCCccccCCccccCCCCCCchHHHHHHHc---CCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHh--cC
Q 001480 1 MTELLVSHHGQKQTLQSPARKSSLGGVQKDLCLAVRE---GSLADVESALALLKKNGGNINSRNIFGLTPLHSAIW--RN 75 (1071)
Q Consensus 1 Ive~LL~~ga~~~~~~~~~~~~~~~~g~TpLh~Aa~~---G~~~~v~~lL~lLl~~GadiN~~d~~G~TpLH~Aa~--~g 75 (1071)
|+++||++|++.+... ...|.||||+|+.. ++.++++ +|+++|+++|.+|..|.||||+|+. .+
T Consensus 68 iv~~Ll~~gadvn~~~-------~~~g~TpLh~a~~~~~~~~~eiv~----~Ll~~gadin~~d~~G~TpLh~a~~~~~~ 136 (209)
T PHA02859 68 ILKFLIENGADVNFKT-------RDNNLSALHHYLSFNKNVEPEILK----ILIDSGSSITEEDEDGKNLLHMYMCNFNV 136 (209)
T ss_pred HHHHHHHCCCCCCccC-------CCCCCCHHHHHHHhCccccHHHHH----HHHHCCCCCCCcCCCCCCHHHHHHHhccC
Confidence 4678888877755321 12467888887753 3566666 7788888888888888888888765 46
Q ss_pred CHHHHHHHHhcCCCCCCCCCCCCcccccc-ccccccccchhhhhccccccccccCCCCCCcccCC
Q 001480 76 QVPIVRRLLAAGADPDARDGESGWSSLHR-ALHFGHLAVASVLLQSGASITLEDCKSRTPVDLLS 139 (1071)
Q Consensus 76 ~~eivk~LL~~GAd~n~~d~~~G~TpL~~-A~~~g~~~vv~lLl~~Ga~v~l~d~~G~tpLdl~s 139 (1071)
+.+++++|+++|++++.+| ..|.||||. |+..++.+++++|+++|++++.++..|.||++++.
T Consensus 137 ~~~iv~~Li~~gadin~~d-~~g~t~Lh~~a~~~~~~~iv~~Ll~~Gadi~~~d~~g~tpl~la~ 200 (209)
T PHA02859 137 RINVIKLLIDSGVSFLNKD-FDNNNILYSYILFHSDKKIFDFLTSLGIDINETNKSGYNCYDLIK 200 (209)
T ss_pred CHHHHHHHHHcCCCccccc-CCCCcHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHh
Confidence 7888888888888888888 778888885 45667788888888888888888888888888754
No 13
>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]
Probab=99.62 E-value=3.6e-16 Score=182.79 Aligned_cols=142 Identities=30% Similarity=0.445 Sum_probs=121.0
Q ss_pred HHHHHhC-CCCccccCCccccCCCCCCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccC-CCCCcHHHHHHhcCCHHH
Q 001480 2 TELLVSH-HGQKQTLQSPARKSSLGGVQKDLCLAVREGSLADVESALALLKKNGGNINSRN-IFGLTPLHSAIWRNQVPI 79 (1071)
Q Consensus 2 ve~LL~~-ga~~~~~~~~~~~~~~~~g~TpLh~Aa~~G~~~~v~~lL~lLl~~GadiN~~d-~~G~TpLH~Aa~~g~~ei 79 (1071)
++.|++. |.++++ ++.+|.|+||+||.++++++++ +|+++|++||... ..+.|||||||++|++.+
T Consensus 60 v~~lve~~g~~v~~--------~D~~g~tlLHWAAiNNrl~v~r----~li~~gadvn~~gG~l~stPLHWAar~G~~~v 127 (600)
T KOG0509|consen 60 VKELVESEGESVNN--------PDREGVTLLHWAAINNRLDVAR----YLISHGADVNAIGGVLGSTPLHWAARNGHISV 127 (600)
T ss_pred HHHHHhhcCcCCCC--------CCcCCccceeHHHHcCcHHHHH----HHHHcCCCccccCCCCCCCcchHHHHcCcHHH
Confidence 5678886 444332 2347889999999999999999 9999999999998 779999999999999999
Q ss_pred HHHHHhcCCCCCCCCCCCCccccccccccccccchhhhhccccccccccCCCCCCcccCCCCceeeeccccccccceeee
Q 001480 80 VRRLLAAGADPDARDGESGWSSLHRALHFGHLAVASVLLQSGASITLEDCKSRTPVDLLSGPVLQVVGSGYNSVATEVFS 159 (1071)
Q Consensus 80 vk~LL~~GAd~n~~d~~~G~TpL~~A~~~g~~~vv~lLl~~Ga~v~l~d~~G~tpLdl~sg~v~qa~~~~~~~~~g~VYs 159 (1071)
|.+||++||||+.+| ..|.||||+|++.+|...+.+|+.+|++++.+|.+|+||+.. ++--++......+.-
T Consensus 128 v~lLlqhGAdpt~~D-~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~grTpLmw-------Aaykg~~~~v~~LL~ 199 (600)
T KOG0509|consen 128 VDLLLQHGADPTLKD-KQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMW-------AAYKGFALFVRRLLK 199 (600)
T ss_pred HHHHHHcCCCCceec-CCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHH-------HHHhcccHHHHHHHH
Confidence 999999999999999 899999999999999999999999999999999999999966 333333332345666
Q ss_pred ccCC
Q 001480 160 WGSG 163 (1071)
Q Consensus 160 WGsN 163 (1071)
||..
T Consensus 200 f~a~ 203 (600)
T KOG0509|consen 200 FGAS 203 (600)
T ss_pred hccc
Confidence 7754
No 14
>PHA02743 Viral ankyrin protein; Provisional
Probab=99.59 E-value=2.4e-15 Score=155.17 Aligned_cols=105 Identities=19% Similarity=0.122 Sum_probs=68.4
Q ss_pred CCCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccC-CCCCcHHHHHHhcCCHHHHHHHHh-cCCCCCCCCCCCCcccc
Q 001480 25 GGVQKDLCLAVREGSLADVESALALLKKNGGNINSRN-IFGLTPLHSAIWRNQVPIVRRLLA-AGADPDARDGESGWSSL 102 (1071)
Q Consensus 25 ~~g~TpLh~Aa~~G~~~~v~~lL~lLl~~GadiN~~d-~~G~TpLH~Aa~~g~~eivk~LL~-~GAd~n~~d~~~G~TpL 102 (1071)
..|.||||+|+..|+.+.+. ++++|+.+|+++|.+| ..|.||||+|+..++.+++++|+. .|++++.+| ..|+|||
T Consensus 55 ~~g~t~Lh~Aa~~g~~~~~~-~i~~Ll~~Gadin~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d-~~g~tpL 132 (166)
T PHA02743 55 HHGRQCTHMVAWYDRANAVM-KIELLVNMGADINARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAIN-YQHETAY 132 (166)
T ss_pred CCCCcHHHHHHHhCccCHHH-HHHHHHHcCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcC-CCCCCHH
Confidence 34566677777666654432 2336666777777666 367777777777777777777764 577777766 5677777
Q ss_pred ccccccccccchhhhhccccccccccCCC
Q 001480 103 HRALHFGHLAVASVLLQSGASITLEDCKS 131 (1071)
Q Consensus 103 ~~A~~~g~~~vv~lLl~~Ga~v~l~d~~G 131 (1071)
|+|+..++.+++++|+.+|++++..+..|
T Consensus 133 ~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~ 161 (166)
T PHA02743 133 HIAYKMRDRRMMEILRANGAVCDDPLSIG 161 (166)
T ss_pred HHHHHcCCHHHHHHHHHcCCCCCCcccCC
Confidence 77777777777777777776666655544
No 15
>PHA02791 ankyrin-like protein; Provisional
Probab=99.58 E-value=1.6e-15 Score=169.33 Aligned_cols=106 Identities=18% Similarity=0.141 Sum_probs=64.7
Q ss_pred CHHHHHhCCCCccccCCccccCCCCCCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHH
Q 001480 1 MTELLVSHHGQKQTLQSPARKSSLGGVQKDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIV 80 (1071)
Q Consensus 1 Ive~LL~~ga~~~~~~~~~~~~~~~~g~TpLh~Aa~~G~~~~v~~lL~lLl~~GadiN~~d~~G~TpLH~Aa~~g~~eiv 80 (1071)
++++|+++|++.... ++.||||+|+..|+.++++ +|+.+|+++|.+|..|+||||+||..|+.+++
T Consensus 45 iv~~Ll~~ga~~n~~----------d~~TpLh~Aa~~g~~eiV~----lLL~~Gadvn~~d~~G~TpLh~Aa~~g~~eiv 110 (284)
T PHA02791 45 LVCTLLNAGALKNLL----------ENEFPLHQAATLEDTKIVK----ILLFSGMDDSQFDDKGNTALYYAVDSGNMQTV 110 (284)
T ss_pred HHHHHHHCcCCCcCC----------CCCCHHHHHHHCCCHHHHH----HHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHH
Confidence 356677766543321 2356677776666666666 56666666666666666666666666666666
Q ss_pred HHHHhcCCCCCCCCCCCCc-cccccccccccccchhhhhccc
Q 001480 81 RRLLAAGADPDARDGESGW-SSLHRALHFGHLAVASVLLQSG 121 (1071)
Q Consensus 81 k~LL~~GAd~n~~d~~~G~-TpL~~A~~~g~~~vv~lLl~~G 121 (1071)
++|+++|++++.++ ..|+ ||||+|+..|+.+++++|+.++
T Consensus 111 k~Ll~~gadin~~~-~~g~~TpL~~Aa~~g~~eivk~LL~~~ 151 (284)
T PHA02791 111 KLFVKKNWRLMFYG-KTGWKTSFYHAVMLNDVSIVSYFLSEI 151 (284)
T ss_pred HHHHHCCCCcCccC-CCCCcHHHHHHHHcCCHHHHHHHHhcC
Confidence 66666666666655 3443 5555555555555555555544
No 16
>PHA02791 ankyrin-like protein; Provisional
Probab=99.57 E-value=2.9e-15 Score=167.37 Aligned_cols=120 Identities=21% Similarity=0.205 Sum_probs=107.4
Q ss_pred CHHHHHhCCCCccccCCccccCCCCCCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHH
Q 001480 1 MTELLVSHHGQKQTLQSPARKSSLGGVQKDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIV 80 (1071)
Q Consensus 1 Ive~LL~~ga~~~~~~~~~~~~~~~~g~TpLh~Aa~~G~~~~v~~lL~lLl~~GadiN~~d~~G~TpLH~Aa~~g~~eiv 80 (1071)
+++||+++++.. .+..|.||||+|+..|+.++++ +|+++|+++|.++ |.||||+|+..|+.+++
T Consensus 14 ~~~~Lis~~a~~----------~D~~G~TpLh~Aa~~g~~eiv~----~Ll~~ga~~n~~d--~~TpLh~Aa~~g~~eiV 77 (284)
T PHA02791 14 LKSFLSSKDAFK----------ADVHGHSALYYAIADNNVRLVC----TLLNAGALKNLLE--NEFPLHQAATLEDTKIV 77 (284)
T ss_pred HHHHHHhCCCCC----------CCCCCCcHHHHHHHcCCHHHHH----HHHHCcCCCcCCC--CCCHHHHHHHCCCHHHH
Confidence 478999987641 2457889999999999999999 8889999998875 78999999999999999
Q ss_pred HHHHhcCCCCCCCCCCCCccccccccccccccchhhhhccccccccccCCCC-CCccc
Q 001480 81 RRLLAAGADPDARDGESGWSSLHRALHFGHLAVASVLLQSGASITLEDCKSR-TPVDL 137 (1071)
Q Consensus 81 k~LL~~GAd~n~~d~~~G~TpL~~A~~~g~~~vv~lLl~~Ga~v~l~d~~G~-tpLdl 137 (1071)
++|+.+|++++.+| ..|+||||+|+..|+.+++++|+++|++++..+..|. +|+.+
T Consensus 78 ~lLL~~Gadvn~~d-~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~ 134 (284)
T PHA02791 78 KILLFSGMDDSQFD-DKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYH 134 (284)
T ss_pred HHHHHCCCCCCCCC-CCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHH
Confidence 99999999999999 8899999999999999999999999999998888774 67654
No 17
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.57 E-value=1.9e-15 Score=170.00 Aligned_cols=150 Identities=26% Similarity=0.363 Sum_probs=126.4
Q ss_pred CHHHHHhCCCCccccCCcccc-CCCCCCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHH
Q 001480 1 MTELLVSHHGQKQTLQSPARK-SSLGGVQKDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPI 79 (1071)
Q Consensus 1 Ive~LL~~ga~~~~~~~~~~~-~~~~~g~TpLh~Aa~~G~~~~v~~lL~lLl~~GadiN~~d~~G~TpLH~Aa~~g~~ei 79 (1071)
||||||++.+........... ....+|.+||+.|+..|++++|+ +|+.+|++||.......|||-.||.-|++++
T Consensus 57 vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk----~L~~~ga~VN~tT~TNStPLraACfDG~lei 132 (615)
T KOG0508|consen 57 VVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVK----LLLRRGASVNDTTRTNSTPLRAACFDGHLEI 132 (615)
T ss_pred HHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHH----HHHHhcCccccccccCCccHHHHHhcchhHH
Confidence 589999976665555443322 12347899999999999999999 8899999999998888999999999999999
Q ss_pred HHHHHhcCCCCCCCCCCCCccccccccccccccchhhhhccccccccccCCCCCCcccCCCCceeeeccccccccceeee
Q 001480 80 VRRLLAAGADPDARDGESGWSSLHRALHFGHLAVASVLLQSGASITLEDCKSRTPVDLLSGPVLQVVGSGYNSVATEVFS 159 (1071)
Q Consensus 80 vk~LL~~GAd~n~~d~~~G~TpL~~A~~~g~~~vv~lLl~~Ga~v~l~d~~G~tpLdl~sg~v~qa~~~~~~~~~g~VYs 159 (1071)
+++|+++|+|+++.| ..|.|.||+|++.||.+++++|++.|++++.++..|.|+++... .+++-.+...+..
T Consensus 133 vKyLvE~gad~~Ian-rhGhTcLmIa~ykGh~~I~qyLle~gADvn~ks~kGNTALH~ca-------EsG~vdivq~Ll~ 204 (615)
T KOG0508|consen 133 VKYLVEHGADPEIAN-RHGHTCLMIACYKGHVDIAQYLLEQGADVNAKSYKGNTALHDCA-------ESGSVDIVQLLLK 204 (615)
T ss_pred HHHHHHcCCCCcccc-cCCCeeEEeeeccCchHHHHHHHHhCCCcchhcccCchHHHhhh-------hcccHHHHHHHHh
Confidence 999999999999999 89999999999999999999999999999999999999997632 2334444445556
Q ss_pred ccC
Q 001480 160 WGS 162 (1071)
Q Consensus 160 WGs 162 (1071)
||.
T Consensus 205 ~ga 207 (615)
T KOG0508|consen 205 HGA 207 (615)
T ss_pred CCc
Confidence 664
No 18
>PHA02878 ankyrin repeat protein; Provisional
Probab=99.56 E-value=3.8e-15 Score=178.27 Aligned_cols=125 Identities=27% Similarity=0.341 Sum_probs=112.6
Q ss_pred CHHHHHhCCCCccccCCccccCCCCC-CchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHH
Q 001480 1 MTELLVSHHGQKQTLQSPARKSSLGG-VQKDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPI 79 (1071)
Q Consensus 1 Ive~LL~~ga~~~~~~~~~~~~~~~~-g~TpLh~Aa~~G~~~~v~~lL~lLl~~GadiN~~d~~G~TpLH~Aa~~g~~ei 79 (1071)
|+++|+++|++.+.. +.. |.||||+|+..|+.++++ +|+++|+++|.+|..|.||||+|+..++.++
T Consensus 149 iv~~Ll~~gadin~~--------~~~~g~tpLh~A~~~~~~~iv~----~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~i 216 (477)
T PHA02878 149 ITKLLLSYGADINMK--------DRHKGNTALHYATENKDQRLTE----LLLSYGANVNIPDKTNNSPLHHAVKHYNKPI 216 (477)
T ss_pred HHHHHHHcCCCCCcc--------CCCCCCCHHHHHHhCCCHHHHH----HHHHCCCCCCCcCCCCCCHHHHHHHhCCHHH
Confidence 478899988875532 233 789999999999999999 8889999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCCCCCCcccccccccc-ccccchhhhhccccccccccC-CCCCCcccC
Q 001480 80 VRRLLAAGADPDARDGESGWSSLHRALHF-GHLAVASVLLQSGASITLEDC-KSRTPVDLL 138 (1071)
Q Consensus 80 vk~LL~~GAd~n~~d~~~G~TpL~~A~~~-g~~~vv~lLl~~Ga~v~l~d~-~G~tpLdl~ 138 (1071)
+++|+++|++++.+| ..|+||||+|+.. ++.+++++|+++|++++..+. .|.||++++
T Consensus 217 v~~Ll~~ga~in~~d-~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~~~g~TpLh~A 276 (477)
T PHA02878 217 VHILLENGASTDARD-KCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSS 276 (477)
T ss_pred HHHHHHcCCCCCCCC-CCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCHHHHH
Confidence 999999999999999 8899999999975 689999999999999998886 799999886
No 19
>PHA02741 hypothetical protein; Provisional
Probab=99.54 E-value=5.8e-15 Score=152.67 Aligned_cols=116 Identities=20% Similarity=0.249 Sum_probs=102.4
Q ss_pred CCCCchHHHHHHHcCCHHHHHHHHHHH--HhCCCCCcccCCCCCcHHHHHHhcCC----HHHHHHHHhcCCCCCCCCCCC
Q 001480 24 LGGVQKDLCLAVREGSLADVESALALL--KKNGGNINSRNIFGLTPLHSAIWRNQ----VPIVRRLLAAGADPDARDGES 97 (1071)
Q Consensus 24 ~~~g~TpLh~Aa~~G~~~~v~~lL~lL--l~~GadiN~~d~~G~TpLH~Aa~~g~----~eivk~LL~~GAd~n~~d~~~ 97 (1071)
+..|.|+||+||..|+.++++.++.++ ...|+++|.+|..|.||||+|+..|+ .+++++|+.+|++++.++...
T Consensus 18 ~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~~~~ 97 (169)
T PHA02741 18 NSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQEMLE 97 (169)
T ss_pred ccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCcCC
Confidence 456889999999999999999554432 14579999999999999999999999 589999999999999998338
Q ss_pred Cccccccccccccccchhhhhc-cccccccccCCCCCCcccCC
Q 001480 98 GWSSLHRALHFGHLAVASVLLQ-SGASITLEDCKSRTPVDLLS 139 (1071)
Q Consensus 98 G~TpL~~A~~~g~~~vv~lLl~-~Ga~v~l~d~~G~tpLdl~s 139 (1071)
|+||||+|+..++.+++++|+. .|++++..+..|+||++++.
T Consensus 98 g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~ 140 (169)
T PHA02741 98 GDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAI 140 (169)
T ss_pred CCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHH
Confidence 9999999999999999999997 59999999999999998743
No 20
>PHA02878 ankyrin repeat protein; Provisional
Probab=99.54 E-value=9.4e-15 Score=174.94 Aligned_cols=125 Identities=27% Similarity=0.317 Sum_probs=111.9
Q ss_pred CHHHHHhCCCCccccCCccccCCCCCCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhc-CCHHH
Q 001480 1 MTELLVSHHGQKQTLQSPARKSSLGGVQKDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWR-NQVPI 79 (1071)
Q Consensus 1 Ive~LL~~ga~~~~~~~~~~~~~~~~g~TpLh~Aa~~G~~~~v~~lL~lLl~~GadiN~~d~~G~TpLH~Aa~~-g~~ei 79 (1071)
++++||++|++... .+..|.||||+|+..|+.++++ +|+++|+++|.+|..|.||||+|+.. ++.++
T Consensus 183 iv~~Ll~~gad~n~--------~d~~g~tpLh~A~~~~~~~iv~----~Ll~~ga~in~~d~~g~TpLh~A~~~~~~~~i 250 (477)
T PHA02878 183 LTELLLSYGANVNI--------PDKTNNSPLHHAVKHYNKPIVH----ILLENGASTDARDKCGNTPLHISVGYCKDYDI 250 (477)
T ss_pred HHHHHHHCCCCCCC--------cCCCCCCHHHHHHHhCCHHHHH----HHHHcCCCCCCCCCCCCCHHHHHHHhcCCHHH
Confidence 57899998887542 2356789999999999999988 88899999999999999999999976 79999
Q ss_pred HHHHHhcCCCCCCCCCCCCccccccccccccccchhhhhccccccccccCCCCCCcccCC
Q 001480 80 VRRLLAAGADPDARDGESGWSSLHRALHFGHLAVASVLLQSGASITLEDCKSRTPVDLLS 139 (1071)
Q Consensus 80 vk~LL~~GAd~n~~d~~~G~TpL~~A~~~g~~~vv~lLl~~Ga~v~l~d~~G~tpLdl~s 139 (1071)
+++|+++|++++.++...|+||||+| .++.+++++|+++|++++..+..|.||++++.
T Consensus 251 v~~Ll~~gadvn~~~~~~g~TpLh~A--~~~~~~v~~Ll~~gadin~~d~~g~TpL~~A~ 308 (477)
T PHA02878 251 LKLLLEHGVDVNAKSYILGLTALHSS--IKSERKLKLLLEYGADINSLNSYKLTPLSSAV 308 (477)
T ss_pred HHHHHHcCCCCCccCCCCCCCHHHHH--ccCHHHHHHHHHCCCCCCCcCCCCCCHHHHHH
Confidence 99999999999999855799999999 46788999999999999999999999998753
No 21
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.54 E-value=3.1e-15 Score=168.22 Aligned_cols=125 Identities=28% Similarity=0.366 Sum_probs=111.9
Q ss_pred CHHHHHhCCCCccccCCccccCCCCCCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHH
Q 001480 1 MTELLVSHHGQKQTLQSPARKSSLGGVQKDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIV 80 (1071)
Q Consensus 1 Ive~LL~~ga~~~~~~~~~~~~~~~~g~TpLh~Aa~~G~~~~v~~lL~lLl~~GadiN~~d~~G~TpLH~Aa~~g~~eiv 80 (1071)
||+.||++|++++.... -..|||..||..|++++++ +|+++|+|++..|..|.|.||+||..||.+|+
T Consensus 99 vVk~L~~~ga~VN~tT~--------TNStPLraACfDG~leivK----yLvE~gad~~IanrhGhTcLmIa~ykGh~~I~ 166 (615)
T KOG0508|consen 99 VVKLLLRRGASVNDTTR--------TNSTPLRAACFDGHLEIVK----YLVEHGADPEIANRHGHTCLMIACYKGHVDIA 166 (615)
T ss_pred HHHHHHHhcCccccccc--------cCCccHHHHHhcchhHHHH----HHHHcCCCCcccccCCCeeEEeeeccCchHHH
Confidence 58999999988764322 2348999999999999999 88899999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCCCCCCccccccccccccccchhhhhccccccccccCCCCCCcccCC
Q 001480 81 RRLLAAGADPDARDGESGWSSLHRALHFGHLAVASVLLQSGASITLEDCKSRTPVDLLS 139 (1071)
Q Consensus 81 k~LL~~GAd~n~~d~~~G~TpL~~A~~~g~~~vv~lLl~~Ga~v~l~d~~G~tpLdl~s 139 (1071)
++|++.|||+|.++ ..|.|+||.|+..|+.+++++|+.+|+-++ .|..|.||+-+++
T Consensus 167 qyLle~gADvn~ks-~kGNTALH~caEsG~vdivq~Ll~~ga~i~-~d~~GmtPL~~Aa 223 (615)
T KOG0508|consen 167 QYLLEQGADVNAKS-YKGNTALHDCAESGSVDIVQLLLKHGAKID-VDGHGMTPLLLAA 223 (615)
T ss_pred HHHHHhCCCcchhc-ccCchHHHhhhhcccHHHHHHHHhCCceee-ecCCCCchHHHHh
Confidence 99999999999999 889999999999999999999999999876 4555999986643
No 22
>PHA02874 ankyrin repeat protein; Provisional
Probab=99.53 E-value=1.3e-14 Score=171.53 Aligned_cols=110 Identities=28% Similarity=0.422 Sum_probs=104.9
Q ss_pred CCCCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCccccc
Q 001480 24 LGGVQKDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLH 103 (1071)
Q Consensus 24 ~~~g~TpLh~Aa~~G~~~~v~~lL~lLl~~GadiN~~d~~G~TpLH~Aa~~g~~eivk~LL~~GAd~n~~d~~~G~TpL~ 103 (1071)
+..|.||||+|+..|+.++++ +|+++|+++|.+|..|.||||+|+..++.+++++|+++|++++..| ..|+||||
T Consensus 121 ~~~g~T~Lh~A~~~~~~~~v~----~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~-~~g~tpL~ 195 (434)
T PHA02874 121 DAELKTFLHYAIKKGDLESIK----MLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKD-NNGESPLH 195 (434)
T ss_pred CCCCccHHHHHHHCCCHHHHH----HHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCC-CCCCCHHH
Confidence 457899999999999999999 8889999999999999999999999999999999999999999999 88999999
Q ss_pred cccccccccchhhhhccccccccccCCCCCCcccC
Q 001480 104 RALHFGHLAVASVLLQSGASITLEDCKSRTPVDLL 138 (1071)
Q Consensus 104 ~A~~~g~~~vv~lLl~~Ga~v~l~d~~G~tpLdl~ 138 (1071)
+|+..|+.+++++|+++|++++..+..|.||++++
T Consensus 196 ~A~~~g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A 230 (434)
T PHA02874 196 NAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNA 230 (434)
T ss_pred HHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHH
Confidence 99999999999999999999999999999999774
No 23
>PHA02875 ankyrin repeat protein; Provisional
Probab=99.52 E-value=1.9e-14 Score=168.80 Aligned_cols=102 Identities=26% Similarity=0.274 Sum_probs=70.2
Q ss_pred CCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCccccccc
Q 001480 26 GVQKDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRA 105 (1071)
Q Consensus 26 ~g~TpLh~Aa~~G~~~~v~~lL~lLl~~GadiN~~d~~G~TpLH~Aa~~g~~eivk~LL~~GAd~n~~d~~~G~TpL~~A 105 (1071)
.|.||||+|+..|+.++++ +|+++|+++|.++..|.||||+|+..|+.+++++|+++|++++.+| ..|+||||+|
T Consensus 101 ~g~tpL~~A~~~~~~~iv~----~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d-~~g~TpL~~A 175 (413)
T PHA02875 101 DGMTPLHLATILKKLDIMK----LLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIED-CCGCTPLIIA 175 (413)
T ss_pred CCCCHHHHHHHhCCHHHHH----HHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCC-CCCCCHHHHH
Confidence 4566777777777666666 6666677777776667777777777777777777777777777666 5677777777
Q ss_pred cccccccchhhhhccccccccccCCCC
Q 001480 106 LHFGHLAVASVLLQSGASITLEDCKSR 132 (1071)
Q Consensus 106 ~~~g~~~vv~lLl~~Ga~v~l~d~~G~ 132 (1071)
+..|+.+++++|+++|++++..+..|.
T Consensus 176 ~~~g~~eiv~~Ll~~ga~~n~~~~~~~ 202 (413)
T PHA02875 176 MAKGDIAICKMLLDSGANIDYFGKNGC 202 (413)
T ss_pred HHcCCHHHHHHHHhCCCCCCcCCCCCC
Confidence 777777777777777777666665554
No 24
>PHA03095 ankyrin-like protein; Provisional
Probab=99.52 E-value=1.5e-14 Score=172.14 Aligned_cols=124 Identities=26% Similarity=0.332 Sum_probs=111.6
Q ss_pred CHHHHHhCCCCccccCCccccCCCCCCchHHHHHHHcC---CHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcC-C
Q 001480 1 MTELLVSHHGQKQTLQSPARKSSLGGVQKDLCLAVREG---SLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRN-Q 76 (1071)
Q Consensus 1 Ive~LL~~ga~~~~~~~~~~~~~~~~g~TpLh~Aa~~G---~~~~v~~lL~lLl~~GadiN~~d~~G~TpLH~Aa~~g-~ 76 (1071)
+|++||++|++.+.. ...|.||||+|+..+ +.++++ +|+++|+|+|.++..|.||||+|+..+ +
T Consensus 29 ~v~~Ll~~ga~vn~~--------~~~g~t~Lh~a~~~~~~~~~~iv~----~Ll~~Gadin~~~~~g~TpLh~A~~~~~~ 96 (471)
T PHA03095 29 EVRRLLAAGADVNFR--------GEYGKTPLHLYLHYSSEKVKDIVR----LLLEAGADVNAPERCGFTPLHLYLYNATT 96 (471)
T ss_pred HHHHHHHcCCCcccC--------CCCCCCHHHHHHHhcCCChHHHHH----HHHHCCCCCCCCCCCCCCHHHHHHHcCCc
Confidence 478999998875421 345789999999998 777777 899999999999999999999999999 5
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCcccccccc--ccccccchhhhhccccccccccCCCCCCccc
Q 001480 77 VPIVRRLLAAGADPDARDGESGWSSLHRAL--HFGHLAVASVLLQSGASITLEDCKSRTPVDL 137 (1071)
Q Consensus 77 ~eivk~LL~~GAd~n~~d~~~G~TpL~~A~--~~g~~~vv~lLl~~Ga~v~l~d~~G~tpLdl 137 (1071)
.+++++|+++|++++.+| ..|+||||+|+ ..++.+++++|+++|++++..+..|.||+++
T Consensus 97 ~~iv~lLl~~ga~in~~~-~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~ 158 (471)
T PHA03095 97 LDVIKLLIKAGADVNAKD-KVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAV 158 (471)
T ss_pred HHHHHHHHHcCCCCCCCC-CCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHH
Confidence 999999999999999999 88999999999 5678899999999999999999999999875
No 25
>PHA02875 ankyrin repeat protein; Provisional
Probab=99.52 E-value=1.6e-14 Score=169.41 Aligned_cols=126 Identities=21% Similarity=0.330 Sum_probs=110.1
Q ss_pred CHHHHHhCCCCccccCCccccCCCCCCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHH
Q 001480 1 MTELLVSHHGQKQTLQSPARKSSLGGVQKDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIV 80 (1071)
Q Consensus 1 Ive~LL~~ga~~~~~~~~~~~~~~~~g~TpLh~Aa~~G~~~~v~~lL~lLl~~GadiN~~d~~G~TpLH~Aa~~g~~eiv 80 (1071)
++++|+++|++... ....|.||||+|+..|+.++++ +|+++|+++|.+|..|.||||+|+..|+.+++
T Consensus 117 iv~~Ll~~gad~~~--------~~~~g~tpLh~A~~~~~~~~v~----~Ll~~g~~~~~~d~~g~TpL~~A~~~g~~eiv 184 (413)
T PHA02875 117 IMKLLIARGADPDI--------PNTDKFSPLHLAVMMGDIKGIE----LLIDHKACLDIEDCCGCTPLIIAMAKGDIAIC 184 (413)
T ss_pred HHHHHHhCCCCCCC--------CCCCCCCHHHHHHHcCCHHHHH----HHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHH
Confidence 47889988877542 2346789999999999999998 88899999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCCCCCCccccccccccccccchhhhhccccccccc---cCCCCCCcccC
Q 001480 81 RRLLAAGADPDARDGESGWSSLHRALHFGHLAVASVLLQSGASITLE---DCKSRTPVDLL 138 (1071)
Q Consensus 81 k~LL~~GAd~n~~d~~~G~TpL~~A~~~g~~~vv~lLl~~Ga~v~l~---d~~G~tpLdl~ 138 (1071)
++|+++|++++..+...+.||+|+|+..++.+++++|+++|++++.. +..+.++++++
T Consensus 185 ~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~gad~n~~~~~~~~~~t~l~~~ 245 (413)
T PHA02875 185 KMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADCNIMFMIEGEECTILDMI 245 (413)
T ss_pred HHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHHCCcCcchHhhcCCCchHHHHHH
Confidence 99999999999999443468999999999999999999999999865 55677888764
No 26
>PHA02946 ankyin-like protein; Provisional
Probab=99.51 E-value=2.3e-14 Score=170.18 Aligned_cols=123 Identities=18% Similarity=0.118 Sum_probs=106.0
Q ss_pred CHHHHHhCCCCccccCCccccCCCCCCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcC--CHH
Q 001480 1 MTELLVSHHGQKQTLQSPARKSSLGGVQKDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRN--QVP 78 (1071)
Q Consensus 1 Ive~LL~~ga~~~~~~~~~~~~~~~~g~TpLh~Aa~~G~~~~v~~lL~lLl~~GadiN~~d~~G~TpLH~Aa~~g--~~e 78 (1071)
++++||++|++++. .+..|.||||+||..|+.++++ +|+++|+++|.+|..|+||||+|+..+ ..+
T Consensus 54 iv~~Ll~~Gadvn~--------~d~~G~TpLh~Aa~~g~~eiv~----lLL~~GAdin~~d~~g~TpLh~A~~~~~~~~e 121 (446)
T PHA02946 54 FVEELLHRGYSPNE--------TDDDGNYPLHIASKINNNRIVA----MLLTHGADPNACDKQHKTPLYYLSGTDDEVIE 121 (446)
T ss_pred HHHHHHHCcCCCCc--------cCCCCCCHHHHHHHcCCHHHHH----HHHHCcCCCCCCCCCCCCHHHHHHHcCCchHH
Confidence 47899998877543 2456889999999999998888 888999999999999999999998766 478
Q ss_pred HHHHHHhcCCCCCC-CCCCCCccccccccccccccchhhhhccccccccccCCCCCCccc
Q 001480 79 IVRRLLAAGADPDA-RDGESGWSSLHRALHFGHLAVASVLLQSGASITLEDCKSRTPVDL 137 (1071)
Q Consensus 79 ivk~LL~~GAd~n~-~d~~~G~TpL~~A~~~g~~~vv~lLl~~Ga~v~l~d~~G~tpLdl 137 (1071)
++++|+++|++++. .| ..|.|||| |+..++.+++++|+++|++++..|..|++|+++
T Consensus 122 ~v~lLl~~Gadin~~~d-~~g~tpL~-aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~ 179 (446)
T PHA02946 122 RINLLVQYGAKINNSVD-EEGCGPLL-ACTDPSERVFKKIMSIGFEARIVDKFGKNHIHR 179 (446)
T ss_pred HHHHHHHcCCCcccccC-CCCCcHHH-HHHCCChHHHHHHHhccccccccCCCCCCHHHH
Confidence 99999999999996 45 78999997 666788999999999999999999999999865
No 27
>PHA02716 CPXV016; CPX019; EVM010; Provisional
Probab=99.51 E-value=2e-14 Score=177.28 Aligned_cols=125 Identities=20% Similarity=0.239 Sum_probs=85.9
Q ss_pred CHHHHHhCC-CCccccCCccccCCCCCCchHHHHHHHc--CCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCC-
Q 001480 1 MTELLVSHH-GQKQTLQSPARKSSLGGVQKDLCLAVRE--GSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQ- 76 (1071)
Q Consensus 1 Ive~LL~~g-a~~~~~~~~~~~~~~~~g~TpLh~Aa~~--G~~~~v~~lL~lLl~~GadiN~~d~~G~TpLH~Aa~~g~- 76 (1071)
++++||++| ++.+... +..|.||||+|+.. ++.++++ +|+++|+|+|.+|..|.||||+|+..|+
T Consensus 157 iVk~LLe~G~ADIN~~~-------d~~G~TpLH~A~~n~~~~~eIVk----lLLe~GADVN~kD~~G~TPLH~Aa~~g~~ 225 (764)
T PHA02716 157 LIKYMVDVGIVNLNYVC-------KKTGYGILHAYLGNMYVDIDILE----WLCNNGVNVNLQNNHLITPLHTYLITGNV 225 (764)
T ss_pred HHHHHHHCCCCCccccc-------CCCCCcHHHHHHHhccCCHHHHH----HHHHcCCCCCCCCCCCCCHHHHHHHcCCC
Confidence 467788877 5433210 23466777776543 4566666 7777777777777777777777777774
Q ss_pred -HHHHHHHHhcCCCCCCCCCCCCccccccc-------------------------------------cccccccchhhhh
Q 001480 77 -VPIVRRLLAAGADPDARDGESGWSSLHRA-------------------------------------LHFGHLAVASVLL 118 (1071)
Q Consensus 77 -~eivk~LL~~GAd~n~~d~~~G~TpL~~A-------------------------------------~~~g~~~vv~lLl 118 (1071)
.+++++||++|||++.+| ..|+||||+| +..|+.+++++|+
T Consensus 226 ~~eIVklLLe~GADVN~kD-~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLL 304 (764)
T PHA02716 226 CASVIKKIIELGGDMDMKC-VNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFL 304 (764)
T ss_pred CHHHHHHHHHcCCCCCCCC-CCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHH
Confidence 367777777777777777 6677777754 2346677777777
Q ss_pred ccccccccccCCCCCCccc
Q 001480 119 QSGASITLEDCKSRTPVDL 137 (1071)
Q Consensus 119 ~~Ga~v~l~d~~G~tpLdl 137 (1071)
++|++++.+|..|+||+++
T Consensus 305 e~GAdIN~kD~~G~TPLH~ 323 (764)
T PHA02716 305 QPGVKLHYKDSAGRTCLHQ 323 (764)
T ss_pred hCCCceeccCCCCCCHHHH
Confidence 7777777777777777764
No 28
>PHA02743 Viral ankyrin protein; Provisional
Probab=99.51 E-value=1.6e-14 Score=149.10 Aligned_cols=115 Identities=18% Similarity=0.263 Sum_probs=104.3
Q ss_pred CCCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHH---HHHHHhcCCCCCCCCCCCCccc
Q 001480 25 GGVQKDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPI---VRRLLAAGADPDARDGESGWSS 101 (1071)
Q Consensus 25 ~~g~TpLh~Aa~~G~~~~v~~lL~lLl~~GadiN~~d~~G~TpLH~Aa~~g~~ei---vk~LL~~GAd~n~~d~~~G~Tp 101 (1071)
..+.++||+||+.|+.+.+.+++++|+++|+++|.+|..|+||||+||..|+.++ +++|+++|++++.+|...|+||
T Consensus 18 ~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d~~~g~Tp 97 (166)
T PHA02743 18 EDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINARELGTGNTL 97 (166)
T ss_pred cCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCCCCCCCCcH
Confidence 3566789999999999888888889999999999999999999999999988654 8999999999999984479999
Q ss_pred cccccccccccchhhhhc-cccccccccCCCCCCcccCC
Q 001480 102 LHRALHFGHLAVASVLLQ-SGASITLEDCKSRTPVDLLS 139 (1071)
Q Consensus 102 L~~A~~~g~~~vv~lLl~-~Ga~v~l~d~~G~tpLdl~s 139 (1071)
||+|+..++.+++++|+. .|++++..+..|.+|++++.
T Consensus 98 Lh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~ 136 (166)
T PHA02743 98 LHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAY 136 (166)
T ss_pred HHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHH
Confidence 999999999999999994 89999999999999998743
No 29
>PHA02874 ankyrin repeat protein; Provisional
Probab=99.51 E-value=2.9e-14 Score=168.64 Aligned_cols=128 Identities=21% Similarity=0.342 Sum_probs=113.5
Q ss_pred CHHHHHhCCCCccccCCccccCCCCCCchHHHHHHHcCCHHHHHHHH-------------------HHHHhCCCCCcccC
Q 001480 1 MTELLVSHHGQKQTLQSPARKSSLGGVQKDLCLAVREGSLADVESAL-------------------ALLKKNGGNINSRN 61 (1071)
Q Consensus 1 Ive~LL~~ga~~~~~~~~~~~~~~~~g~TpLh~Aa~~G~~~~v~~lL-------------------~lLl~~GadiN~~d 61 (1071)
||++|+++|++.+.. ...|.||||+|+..|+.++++.++ +.|++.|+++|.+|
T Consensus 50 iv~~Ll~~Ga~~n~~--------~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~ 121 (434)
T PHA02874 50 IVELFIKHGADINHI--------NTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKD 121 (434)
T ss_pred HHHHHHHCCCCCCCC--------CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCCC
Confidence 579999988875432 345779999999999999888443 34556677889999
Q ss_pred CCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCccccccccccccccchhhhhccccccccccCCCCCCccc
Q 001480 62 IFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRALHFGHLAVASVLLQSGASITLEDCKSRTPVDL 137 (1071)
Q Consensus 62 ~~G~TpLH~Aa~~g~~eivk~LL~~GAd~n~~d~~~G~TpL~~A~~~g~~~vv~lLl~~Ga~v~l~d~~G~tpLdl 137 (1071)
..|.||||+||..|+.+++++|+++|++++.+| ..|.||||+|+..++.+++++|+++|++++..+..|.||+++
T Consensus 122 ~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d-~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~tpL~~ 196 (434)
T PHA02874 122 AELKTFLHYAIKKGDLESIKMLFEYGADVNIED-DNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHN 196 (434)
T ss_pred CCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcC-CCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHH
Confidence 999999999999999999999999999999999 889999999999999999999999999999999999999876
No 30
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=99.51 E-value=2.8e-14 Score=131.08 Aligned_cols=89 Identities=35% Similarity=0.570 Sum_probs=82.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCcccccccccccc
Q 001480 31 LCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRALHFGH 110 (1071)
Q Consensus 31 Lh~Aa~~G~~~~v~~lL~lLl~~GadiN~~d~~G~TpLH~Aa~~g~~eivk~LL~~GAd~n~~d~~~G~TpL~~A~~~g~ 110 (1071)
||+||+.|+.++++ +|++.+.+++. |.||||+||..|+.+++++|+++|++++.+| ..|+||||+|+..++
T Consensus 1 L~~A~~~~~~~~~~----~ll~~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~ 71 (89)
T PF12796_consen 1 LHIAAQNGNLEILK----FLLEKGADINL----GNTALHYAAENGNLEIVKLLLENGADINSQD-KNGNTALHYAAENGN 71 (89)
T ss_dssp HHHHHHTTTHHHHH----HHHHTTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BS-TTSSBHHHHHHHTTH
T ss_pred CHHHHHcCCHHHHH----HHHHCcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccccC-CCCCCHHHHHHHcCC
Confidence 79999999999999 78889988887 8999999999999999999999999999999 889999999999999
Q ss_pred ccchhhhhcccccccccc
Q 001480 111 LAVASVLLQSGASITLED 128 (1071)
Q Consensus 111 ~~vv~lLl~~Ga~v~l~d 128 (1071)
.+++++|+++|++++.+|
T Consensus 72 ~~~~~~Ll~~g~~~~~~n 89 (89)
T PF12796_consen 72 LEIVKLLLEHGADVNIRN 89 (89)
T ss_dssp HHHHHHHHHTTT-TTSS-
T ss_pred HHHHHHHHHcCCCCCCcC
Confidence 999999999999998764
No 31
>PHA03100 ankyrin repeat protein; Provisional
Probab=99.49 E-value=2.8e-14 Score=170.37 Aligned_cols=107 Identities=30% Similarity=0.405 Sum_probs=66.0
Q ss_pred CCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCC------CcHHHHHHhcCC--HHHHHHHHhcCCCCCCCCCCC
Q 001480 26 GVQKDLCLAVREGSLADVESALALLKKNGGNINSRNIFG------LTPLHSAIWRNQ--VPIVRRLLAAGADPDARDGES 97 (1071)
Q Consensus 26 ~g~TpLh~Aa~~G~~~~v~~lL~lLl~~GadiN~~d~~G------~TpLH~Aa~~g~--~eivk~LL~~GAd~n~~d~~~ 97 (1071)
.|.||||+|+..|+.++++ +|+++|++++..+..| .||||+|+..++ .+++++|+++|++++.+| ..
T Consensus 175 ~g~tpL~~A~~~~~~~iv~----~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d-~~ 249 (480)
T PHA03100 175 YGYTPLHIAVEKGNIDVIK----FLLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIKD-VY 249 (480)
T ss_pred CCCCHHHHHHHhCCHHHHH----HHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCC-CC
Confidence 3455555555555555555 5555555555555555 555666665555 666666666666666666 56
Q ss_pred CccccccccccccccchhhhhccccccccccCCCCCCccc
Q 001480 98 GWSSLHRALHFGHLAVASVLLQSGASITLEDCKSRTPVDL 137 (1071)
Q Consensus 98 G~TpL~~A~~~g~~~vv~lLl~~Ga~v~l~d~~G~tpLdl 137 (1071)
|+||||+|+..++.+++++|+++|++++..+..|.||+++
T Consensus 250 g~TpL~~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpl~~ 289 (480)
T PHA03100 250 GFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHI 289 (480)
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHH
Confidence 6666666666666666666666666666666666666655
No 32
>PHA02859 ankyrin repeat protein; Provisional
Probab=99.49 E-value=4.1e-14 Score=151.51 Aligned_cols=109 Identities=19% Similarity=0.249 Sum_probs=97.3
Q ss_pred CCCCchHHHHHHHcC--CHHHHHHHHHHHHhCCCCCcccC-CCCCcHHHHHHhc---CCHHHHHHHHhcCCCCCCCCCCC
Q 001480 24 LGGVQKDLCLAVREG--SLADVESALALLKKNGGNINSRN-IFGLTPLHSAIWR---NQVPIVRRLLAAGADPDARDGES 97 (1071)
Q Consensus 24 ~~~g~TpLh~Aa~~G--~~~~v~~lL~lLl~~GadiN~~d-~~G~TpLH~Aa~~---g~~eivk~LL~~GAd~n~~d~~~ 97 (1071)
+..|.||||+|+..+ +.++++ +|+++|+++|.++ ..|.||||+|+.. ++.+++++|+++|++++.+| ..
T Consensus 48 ~~~g~TpLh~a~~~~~~~~eiv~----~Ll~~gadvn~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadin~~d-~~ 122 (209)
T PHA02859 48 NDLYETPIFSCLEKDKVNVEILK----FLIENGADVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSITEED-ED 122 (209)
T ss_pred CccCCCHHHHHHHcCCCCHHHHH----HHHHCCCCCCccCCCCCCCHHHHHHHhCccccHHHHHHHHHCCCCCCCcC-CC
Confidence 356789999999854 788888 8999999999997 5899999998864 47999999999999999999 89
Q ss_pred Cccccccccc--cccccchhhhhccccccccccCCCCCCccc
Q 001480 98 GWSSLHRALH--FGHLAVASVLLQSGASITLEDCKSRTPVDL 137 (1071)
Q Consensus 98 G~TpL~~A~~--~g~~~vv~lLl~~Ga~v~l~d~~G~tpLdl 137 (1071)
|+||||+|+. .++.+++++|+++|++++.+|..|.||++.
T Consensus 123 G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~ 164 (209)
T PHA02859 123 GKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYS 164 (209)
T ss_pred CCCHHHHHHHhccCCHHHHHHHHHcCCCcccccCCCCcHHHH
Confidence 9999999875 468999999999999999999999999974
No 33
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=99.48 E-value=4.8e-14 Score=179.34 Aligned_cols=124 Identities=23% Similarity=0.311 Sum_probs=92.9
Q ss_pred CHHHHHhCCCCccccCCccccCCCCCCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHH--
Q 001480 1 MTELLVSHHGQKQTLQSPARKSSLGGVQKDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVP-- 78 (1071)
Q Consensus 1 Ive~LL~~ga~~~~~~~~~~~~~~~~g~TpLh~Aa~~G~~~~v~~lL~lLl~~GadiN~~d~~G~TpLH~Aa~~g~~e-- 78 (1071)
+++.||++|++.+. .+..|.||||+||..|+.++++ +|+++|+|+|.+|.+|+||||+|+..|+.+
T Consensus 540 ~l~~Ll~~G~d~n~--------~d~~G~TpLh~Aa~~g~~~~v~----~Ll~~gadin~~d~~G~TpL~~A~~~g~~~iv 607 (823)
T PLN03192 540 LLEELLKAKLDPDI--------GDSKGRTPLHIAASKGYEDCVL----VLLKHACNVHIRDANGNTALWNAISAKHHKIF 607 (823)
T ss_pred HHHHHHHCCCCCCC--------CCCCCCCHHHHHHHcChHHHHH----HHHhcCCCCCCcCCCCCCHHHHHHHhCCHHHH
Confidence 46889988877442 2456889999999999999988 888999999999999999998766655555
Q ss_pred -----------------------------HHHHHHhcCCCCCCCCCCCCccccccccccccccchhhhhccccccccccC
Q 001480 79 -----------------------------IVRRLLAAGADPDARDGESGWSSLHRALHFGHLAVASVLLQSGASITLEDC 129 (1071)
Q Consensus 79 -----------------------------ivk~LL~~GAd~n~~d~~~G~TpL~~A~~~g~~~vv~lLl~~Ga~v~l~d~ 129 (1071)
++++|+++|+|+|.+| ..|+||||+|+..|+.+++++|+++|++++..+.
T Consensus 608 ~~L~~~~~~~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d-~~G~TpLh~A~~~g~~~iv~~Ll~~GAdv~~~~~ 686 (823)
T PLN03192 608 RILYHFASISDPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSED-HQGATALQVAMAEDHVDMVRLLIMNGADVDKANT 686 (823)
T ss_pred HHHHhcCcccCcccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCC-CCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCCCC
Confidence 4555666677777777 6677777777777777777777777777776666
Q ss_pred CC-CCCccc
Q 001480 130 KS-RTPVDL 137 (1071)
Q Consensus 130 ~G-~tpLdl 137 (1071)
.| .+|.++
T Consensus 687 ~g~~t~~~l 695 (823)
T PLN03192 687 DDDFSPTEL 695 (823)
T ss_pred CCCCCHHHH
Confidence 65 555544
No 34
>PHA02884 ankyrin repeat protein; Provisional
Probab=99.47 E-value=5.4e-14 Score=157.62 Aligned_cols=107 Identities=21% Similarity=0.217 Sum_probs=99.2
Q ss_pred chHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccC----CCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCccccc
Q 001480 28 QKDLCLAVREGSLADVESALALLKKNGGNINSRN----IFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLH 103 (1071)
Q Consensus 28 ~TpLh~Aa~~G~~~~v~~lL~lLl~~GadiN~~d----~~G~TpLH~Aa~~g~~eivk~LL~~GAd~n~~d~~~G~TpL~ 103 (1071)
.++||.|+..|+.++++ +|+++|+|+|.++ ..|.||||+|+..++.+++++|+++||+++.++...|.||||
T Consensus 34 ~~lL~~A~~~~~~eivk----~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~TpLh 109 (300)
T PHA02884 34 ANILYSSIKFHYTDIID----AILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITPLY 109 (300)
T ss_pred CHHHHHHHHcCCHHHHH----HHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCCHHH
Confidence 46788888889999999 8999999999984 589999999999999999999999999999975367999999
Q ss_pred cccccccccchhhhhccccccccccCCCCCCcccC
Q 001480 104 RALHFGHLAVASVLLQSGASITLEDCKSRTPVDLL 138 (1071)
Q Consensus 104 ~A~~~g~~~vv~lLl~~Ga~v~l~d~~G~tpLdl~ 138 (1071)
+|+..++.+++++|+.+|++++.++..|.||++++
T Consensus 110 ~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A 144 (300)
T PHA02884 110 ISVLHGCLKCLEILLSYGADINIQTNDMVTPIELA 144 (300)
T ss_pred HHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence 99999999999999999999999999999999875
No 35
>PHA02795 ankyrin-like protein; Provisional
Probab=99.47 E-value=5e-14 Score=163.93 Aligned_cols=124 Identities=18% Similarity=0.146 Sum_probs=110.2
Q ss_pred CHHHHHhCCCCccccCCccccCCCCCCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccC------CCCCcHHHHHHhc
Q 001480 1 MTELLVSHHGQKQTLQSPARKSSLGGVQKDLCLAVREGSLADVESALALLKKNGGNINSRN------IFGLTPLHSAIWR 74 (1071)
Q Consensus 1 Ive~LL~~ga~~~~~~~~~~~~~~~~g~TpLh~Aa~~G~~~~v~~lL~lLl~~GadiN~~d------~~G~TpLH~Aa~~ 74 (1071)
||++||+|||+.... ++.||||.|+..++.++++ +|+.+|++.+... ..+.|++|.|+..
T Consensus 133 iV~~LI~~GADIn~~----------~~~t~lh~A~~~~~~eIVk----~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~ 198 (437)
T PHA02795 133 IVDFMVDHGAVIYKI----------ECLNAYFRGICKKESSVVE----FILNCGIPDENDVKLDLYKIIQYTRGFLVDEP 198 (437)
T ss_pred HHHHHHHCCCCCCCC----------CCCCHHHHHHHcCcHHHHH----HHHhcCCcccccccchhhhhhccchhHHHHhc
Confidence 589999999997531 2358999999999999999 8999998543222 4588999999999
Q ss_pred CCHHHHHHHHhcCCCCCCCCCCCCccccccccccccccchhhhhccccccccccCCCCCCcccCC
Q 001480 75 NQVPIVRRLLAAGADPDARDGESGWSSLHRALHFGHLAVASVLLQSGASITLEDCKSRTPVDLLS 139 (1071)
Q Consensus 75 g~~eivk~LL~~GAd~n~~d~~~G~TpL~~A~~~g~~~vv~lLl~~Ga~v~l~d~~G~tpLdl~s 139 (1071)
++.+++++|+++||++|.+| ..|+||||+|+..|+.+++++|+++|++++.++..|+||++++.
T Consensus 199 ~~~eIve~LIs~GADIN~kD-~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN~~d~~G~TpLh~Aa 262 (437)
T PHA02795 199 TVLEIYKLCIPYIEDINQLD-AGGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTCLDVAV 262 (437)
T ss_pred CHHHHHHHHHhCcCCcCcCC-CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHH
Confidence 99999999999999999999 89999999999999999999999999999999999999998753
No 36
>PHA02798 ankyrin-like protein; Provisional
Probab=99.47 E-value=6.1e-14 Score=168.51 Aligned_cols=80 Identities=19% Similarity=0.286 Sum_probs=52.1
Q ss_pred HHHHHhCCCCccccCCccccCCCCCCchHHHHHHHcC---CHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCC--
Q 001480 2 TELLVSHHGQKQTLQSPARKSSLGGVQKDLCLAVREG---SLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQ-- 76 (1071)
Q Consensus 2 ve~LL~~ga~~~~~~~~~~~~~~~~g~TpLh~Aa~~G---~~~~v~~lL~lLl~~GadiN~~d~~G~TpLH~Aa~~g~-- 76 (1071)
+++|+++|++.+.. +..|.||||+|+..+ +.++++ +|+++|+|+|.+|..|.||||+|+..++
T Consensus 92 v~~Ll~~GadiN~~--------d~~G~TpLh~a~~~~~~~~~~iv~----~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~ 159 (489)
T PHA02798 92 VKILIENGADINKK--------NSDGETPLYCLLSNGYINNLEILL----FMIENGADTTLLDKDGFTMLQVYLQSNHHI 159 (489)
T ss_pred HHHHHHCCCCCCCC--------CCCcCcHHHHHHHcCCcChHHHHH----HHHHcCCCccccCCCCCcHHHHHHHcCCcc
Confidence 45566655553321 235667777777765 445555 7777777777777777777777777766
Q ss_pred -HHHHHHHHhcCCCCCCC
Q 001480 77 -VPIVRRLLAAGADPDAR 93 (1071)
Q Consensus 77 -~eivk~LL~~GAd~n~~ 93 (1071)
.+++++|+++|++++..
T Consensus 160 ~~~vv~~Ll~~gadin~~ 177 (489)
T PHA02798 160 DIEIIKLLLEKGVDINTH 177 (489)
T ss_pred hHHHHHHHHHhCCCcccc
Confidence 67777777766665544
No 37
>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]
Probab=99.47 E-value=6.7e-14 Score=140.11 Aligned_cols=108 Identities=32% Similarity=0.533 Sum_probs=98.0
Q ss_pred chHHHHHHHcCCHHHHHHHHHHHHhCCC-CCcccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCcccccccc
Q 001480 28 QKDLCLAVREGSLADVESALALLKKNGG-NINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRAL 106 (1071)
Q Consensus 28 ~TpLh~Aa~~G~~~~v~~lL~lLl~~Ga-diN~~d~~G~TpLH~Aa~~g~~eivk~LL~~GAd~n~~d~~~G~TpL~~A~ 106 (1071)
.--+.+|+..+.+..|+ .|++..+ -+|.+|.+|+||||-|+++||.+||+.|+..||+++.+. ..||||||.||
T Consensus 64 ~rl~lwaae~nrl~eV~----~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T-~~GWTPLhSAc 138 (228)
T KOG0512|consen 64 IRLLLWAAEKNRLTEVQ----RLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKT-NEGWTPLHSAC 138 (228)
T ss_pred HHHHHHHHhhccHHHHH----HHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCccccc-ccCccchhhhh
Confidence 34578899999999999 4444544 589999999999999999999999999999999999999 88999999999
Q ss_pred ccccccchhhhhccccccccccCCCCCCcccCCC
Q 001480 107 HFGHLAVASVLLQSGASITLEDCKSRTPVDLLSG 140 (1071)
Q Consensus 107 ~~g~~~vv~lLl~~Ga~v~l~d~~G~tpLdl~sg 140 (1071)
...+.+|+.+|+++|++++.......||+++..+
T Consensus 139 kWnN~~va~~LLqhgaDVnA~t~g~ltpLhlaa~ 172 (228)
T KOG0512|consen 139 KWNNFEVAGRLLQHGADVNAQTKGLLTPLHLAAG 172 (228)
T ss_pred cccchhHHHHHHhccCcccccccccchhhHHhhc
Confidence 9999999999999999999999999999998665
No 38
>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]
Probab=99.46 E-value=6e-14 Score=140.44 Aligned_cols=125 Identities=26% Similarity=0.246 Sum_probs=106.0
Q ss_pred HHHHHhCCCCccccCCccccCCCCCCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHH
Q 001480 2 TELLVSHHGQKQTLQSPARKSSLGGVQKDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVR 81 (1071)
Q Consensus 2 ve~LL~~ga~~~~~~~~~~~~~~~~g~TpLh~Aa~~G~~~~v~~lL~lLl~~GadiN~~d~~G~TpLH~Aa~~g~~eivk 81 (1071)
|+.||+.-++..|. .+.+++||||.|+.+|+.++++ .|+..|||++.+...||||||-||..++.+++.
T Consensus 79 V~~lL~e~an~vNt-------rD~D~YTpLHRAaYn~h~div~----~ll~~gAn~~a~T~~GWTPLhSAckWnN~~va~ 147 (228)
T KOG0512|consen 79 VQRLLSEKANHVNT-------RDEDEYTPLHRAAYNGHLDIVH----ELLLSGANKEAKTNEGWTPLHSACKWNNFEVAG 147 (228)
T ss_pred HHHHHHhccccccc-------cccccccHHHHHHhcCchHHHH----HHHHccCCcccccccCccchhhhhcccchhHHH
Confidence 56777766655543 3578999999999999999999 777899999999999999999999999999999
Q ss_pred HHHhcCCCCCCCCCCCCccccccccccccc-cchhhhh-ccccccccccCCCCCCcccC
Q 001480 82 RLLAAGADPDARDGESGWSSLHRALHFGHL-AVASVLL-QSGASITLEDCKSRTPVDLL 138 (1071)
Q Consensus 82 ~LL~~GAd~n~~d~~~G~TpL~~A~~~g~~-~vv~lLl-~~Ga~v~l~d~~G~tpLdl~ 138 (1071)
+||.+|+|+|+.. ...+||||+|+...+. ..+.+|+ ..+.++..+++.+.++++++
T Consensus 148 ~LLqhgaDVnA~t-~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iA 205 (228)
T KOG0512|consen 148 RLLQHGADVNAQT-KGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIA 205 (228)
T ss_pred HHHhccCcccccc-cccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHH
Confidence 9999999999998 7789999999876654 4445544 56788888899999998774
No 39
>KOG0514 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.46 E-value=1.1e-14 Score=159.89 Aligned_cols=130 Identities=25% Similarity=0.388 Sum_probs=109.4
Q ss_pred ccCCCCCCchHHHHHHHcCCHHHHHHHHHHHHhCC-CCCcccCCCCC---------------------------------
Q 001480 20 RKSSLGGVQKDLCLAVREGSLADVESALALLKKNG-GNINSRNIFGL--------------------------------- 65 (1071)
Q Consensus 20 ~~~~~~~g~TpLh~Aa~~G~~~~v~~lL~lLl~~G-adiN~~d~~G~--------------------------------- 65 (1071)
.+..+.+|+|+||||+.++|+++|+ +|++.| +++|.++.-|+
T Consensus 261 VNlaDsNGNTALHYsVSHaNF~VV~----~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgnVNaKA 336 (452)
T KOG0514|consen 261 VNLADSNGNTALHYAVSHANFDVVS----ILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGDVNAKA 336 (452)
T ss_pred hhhhcCCCCeeeeeeecccchHHHH----HHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhccCcchhh
Confidence 3445678899999999999999999 666666 57776665555
Q ss_pred -----cHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCccccccccccccccchhhhhcc-ccccccccCCCCCCcccCC
Q 001480 66 -----TPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRALHFGHLAVASVLLQS-GASITLEDCKSRTPVDLLS 139 (1071)
Q Consensus 66 -----TpLH~Aa~~g~~eivk~LL~~GAd~n~~d~~~G~TpL~~A~~~g~~~vv~lLl~~-Ga~v~l~d~~G~tpLdl~s 139 (1071)
|+||+|+.+|+.++|+.||..|||+|++| .+|-|+|++|+.+||.+++++||.. +++..+.|.+|.|++-+
T Consensus 337 sQ~gQTALMLAVSHGr~d~vk~LLacgAdVNiQD-dDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~I-- 413 (452)
T KOG0514|consen 337 SQHGQTALMLAVSHGRVDMVKALLACGADVNIQD-DDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSI-- 413 (452)
T ss_pred hhhcchhhhhhhhcCcHHHHHHHHHccCCCcccc-CCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhh--
Confidence 66666667899999999999999999999 8999999999999999999999976 89999999999999855
Q ss_pred CCceeeeccccccccceeeecc
Q 001480 140 GPVLQVVGSGYNSVATEVFSWG 161 (1071)
Q Consensus 140 g~v~qa~~~~~~~~~g~VYsWG 161 (1071)
+...+|..++.-||+.=
T Consensus 414 -----Aleagh~eIa~mlYa~~ 430 (452)
T KOG0514|consen 414 -----ALEAGHREIAVMLYAHM 430 (452)
T ss_pred -----HHhcCchHHHHHHHHHH
Confidence 67778888877777643
No 40
>PHA02798 ankyrin-like protein; Provisional
Probab=99.46 E-value=7.1e-14 Score=167.96 Aligned_cols=124 Identities=23% Similarity=0.378 Sum_probs=104.7
Q ss_pred CHHHHHhCCCCccccCCccccCCCCCCchHHHHHHHc-----CCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcC
Q 001480 1 MTELLVSHHGQKQTLQSPARKSSLGGVQKDLCLAVRE-----GSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRN 75 (1071)
Q Consensus 1 Ive~LL~~ga~~~~~~~~~~~~~~~~g~TpLh~Aa~~-----G~~~~v~~lL~lLl~~GadiN~~d~~G~TpLH~Aa~~g 75 (1071)
|+++||++|++.+.. +..|.||||.|+.. ++.++++ +|+++|+|+|.+|..|+||||+|+..+
T Consensus 53 iv~~Ll~~Gadvn~~--------d~~g~TpL~~~~~n~~~~~~~~~iv~----~Ll~~GadiN~~d~~G~TpLh~a~~~~ 120 (489)
T PHA02798 53 IVKLFINLGANVNGL--------DNEYSTPLCTILSNIKDYKHMLDIVK----ILIENGADINKKNSDGETPLYCLLSNG 120 (489)
T ss_pred HHHHHHHCCCCCCCC--------CCCCCChHHHHHHhHHhHHhHHHHHH----HHHHCCCCCCCCCCCcCcHHHHHHHcC
Confidence 589999999875532 35678999998864 4455555 999999999999999999999999875
Q ss_pred ---CHHHHHHHHhcCCCCCCCCCCCCcccccccccccc---ccchhhhhccccccccccC-CCCCCccc
Q 001480 76 ---QVPIVRRLLAAGADPDARDGESGWSSLHRALHFGH---LAVASVLLQSGASITLEDC-KSRTPVDL 137 (1071)
Q Consensus 76 ---~~eivk~LL~~GAd~n~~d~~~G~TpL~~A~~~g~---~~vv~lLl~~Ga~v~l~d~-~G~tpLdl 137 (1071)
+.+++++|+++||+++.+| ..|+||||+|+..++ .+++++|+++|++++..+. .+.+|++.
T Consensus 121 ~~~~~~iv~~Ll~~Gadvn~~d-~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~ 188 (489)
T PHA02798 121 YINNLEILLFMIENGADTTLLD-KDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHC 188 (489)
T ss_pred CcChHHHHHHHHHcCCCccccC-CCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHH
Confidence 7899999999999999999 889999999999887 8999999999999988754 57777653
No 41
>PHA02716 CPXV016; CPX019; EVM010; Provisional
Probab=99.45 E-value=9.6e-14 Score=171.28 Aligned_cols=123 Identities=23% Similarity=0.257 Sum_probs=104.1
Q ss_pred CHHHHHhCCCCccccCCccccCCCCCCchHHHHHH-------------------------------------HcCCHHHH
Q 001480 1 MTELLVSHHGQKQTLQSPARKSSLGGVQKDLCLAV-------------------------------------REGSLADV 43 (1071)
Q Consensus 1 Ive~LL~~ga~~~~~~~~~~~~~~~~g~TpLh~Aa-------------------------------------~~G~~~~v 43 (1071)
||++||++|++++.. +..|+||||+|+ ..|+.+++
T Consensus 229 IVklLLe~GADVN~k--------D~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiV 300 (764)
T PHA02716 229 VIKKIIELGGDMDMK--------CVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVV 300 (764)
T ss_pred HHHHHHHcCCCCCCC--------CCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHH
Confidence 478888888875532 356789999764 33455555
Q ss_pred HHHHHHHHhCCCCCcccCCCCCcHHHHHHh--cCCHHHHHHHHhcCCCCCCCCCCCCccccccccc--------------
Q 001480 44 ESALALLKKNGGNINSRNIFGLTPLHSAIW--RNQVPIVRRLLAAGADPDARDGESGWSSLHRALH-------------- 107 (1071)
Q Consensus 44 ~~lL~lLl~~GadiN~~d~~G~TpLH~Aa~--~g~~eivk~LL~~GAd~n~~d~~~G~TpL~~A~~-------------- 107 (1071)
+ +|+++|+++|.+|..|+||||+|+. .++.+++++|+++|++++.+| ..|+||||+|+.
T Consensus 301 k----lLLe~GAdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD-~~G~TPLH~A~~~lav~~~ld~~~~~ 375 (764)
T PHA02716 301 Y----SFLQPGVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPD-NIGNTVLHTYLSMLSVVNILDPETDN 375 (764)
T ss_pred H----HHHhCCCceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCccCC-CCCCCHHHHHHHhhhhhccccccccc
Confidence 5 8899999999999999999999864 468899999999999999999 889999999864
Q ss_pred cccccchhhhhccccccccccCCCCCCcc
Q 001480 108 FGHLAVASVLLQSGASITLEDCKSRTPVD 136 (1071)
Q Consensus 108 ~g~~~vv~lLl~~Ga~v~l~d~~G~tpLd 136 (1071)
.++.+++++|+++|++++.++..|.||++
T Consensus 376 ~~~~eVVklLL~~GADIn~kn~~G~TPLh 404 (764)
T PHA02716 376 DIRLDVIQCLISLGADITAVNCLGYTPLT 404 (764)
T ss_pred cChHHHHHHHHHCCCCCCCcCCCCCChHH
Confidence 36889999999999999999999999997
No 42
>PHA03095 ankyrin-like protein; Provisional
Probab=99.45 E-value=9.9e-14 Score=165.19 Aligned_cols=109 Identities=27% Similarity=0.341 Sum_probs=96.8
Q ss_pred CCCchHHHHHHHc--CCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCH--HHHHHHHhcCCCCCCCCCCCCcc
Q 001480 25 GGVQKDLCLAVRE--GSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQV--PIVRRLLAAGADPDARDGESGWS 100 (1071)
Q Consensus 25 ~~g~TpLh~Aa~~--G~~~~v~~lL~lLl~~GadiN~~d~~G~TpLH~Aa~~g~~--eivk~LL~~GAd~n~~d~~~G~T 100 (1071)
..|.||||+|+.. ++.++++ +|+++|++++.+|..|+||||+||..++. .+++.|+..|++++.+| ..|+|
T Consensus 185 ~~g~t~Lh~~~~~~~~~~~i~~----~Ll~~g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~din~~d-~~g~T 259 (471)
T PHA03095 185 DRFRSLLHHHLQSFKPRARIVR----ELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARN-RYGQT 259 (471)
T ss_pred CCCCCHHHHHHHHCCCcHHHHH----HHHHcCCCCcccCCCCCCHHHHHHhcCCchHHHHHHHHHcCCCCCCcC-CCCCC
Confidence 4577888888865 5556666 88899999999999999999999999875 58889999999999999 88999
Q ss_pred ccccccccccccchhhhhccccccccccCCCCCCcccC
Q 001480 101 SLHRALHFGHLAVASVLLQSGASITLEDCKSRTPVDLL 138 (1071)
Q Consensus 101 pL~~A~~~g~~~vv~lLl~~Ga~v~l~d~~G~tpLdl~ 138 (1071)
|||+|+..|+.+++++|+++|++++..+..|.||++++
T Consensus 260 pLh~A~~~~~~~~v~~LL~~gad~n~~~~~g~tpl~~A 297 (471)
T PHA03095 260 PLHYAAVFNNPRACRRLIALGADINAVSSDGNTPLSLM 297 (471)
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHH
Confidence 99999999999999999999999999999999999774
No 43
>PHA02989 ankyrin repeat protein; Provisional
Probab=99.45 E-value=9.1e-14 Score=167.26 Aligned_cols=108 Identities=16% Similarity=0.269 Sum_probs=62.5
Q ss_pred CCchHHHHHHHc--CCHHHHHHHHHHHHhCCCCCcc-cCCCCCcHHHHHHhcC----CHHHHHHHHhcCCCCCCCCC---
Q 001480 26 GVQKDLCLAVRE--GSLADVESALALLKKNGGNINS-RNIFGLTPLHSAIWRN----QVPIVRRLLAAGADPDARDG--- 95 (1071)
Q Consensus 26 ~g~TpLh~Aa~~--G~~~~v~~lL~lLl~~GadiN~-~d~~G~TpLH~Aa~~g----~~eivk~LL~~GAd~n~~d~--- 95 (1071)
.|.||||+|+.. ++.++++ +|+++|+|++. .+..|.||||+|+..+ +.+++++|+++|++++..|.
T Consensus 144 ~g~tpLh~a~~~~~~~~~iv~----~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~ 219 (494)
T PHA02989 144 RGYNLLHMYLESFSVKKDVIK----ILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSE 219 (494)
T ss_pred CCCCHHHHHHHhccCCHHHHH----HHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccc
Confidence 345556655433 3445554 55556666555 3455566666555432 55666666666555443320
Q ss_pred ----------------------------------CCCccccccccccccccchhhhhccccccccccCCCCCCccc
Q 001480 96 ----------------------------------ESGWSSLHRALHFGHLAVASVLLQSGASITLEDCKSRTPVDL 137 (1071)
Q Consensus 96 ----------------------------------~~G~TpL~~A~~~g~~~vv~lLl~~Ga~v~l~d~~G~tpLdl 137 (1071)
..|+||||+|+..++.+++++|+++|++++.++..|.||+++
T Consensus 220 t~l~~~~~~~~~~~~~~~~il~~l~~~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadin~~d~~G~TpL~~ 295 (494)
T PHA02989 220 SVLESFLDNNKILSKKEFKVLNFILKYIKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDIYNVSKDGDTVLTY 295 (494)
T ss_pred cHHHHHHHhchhhcccchHHHHHHHhCCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCCccccCCCCCCHHHH
Confidence 336666666666666666666666666666666666666654
No 44
>PHA02795 ankyrin-like protein; Provisional
Probab=99.44 E-value=1.1e-13 Score=161.08 Aligned_cols=122 Identities=22% Similarity=0.159 Sum_probs=104.1
Q ss_pred CHHHHHhCCCCccccCCccccCCCCCCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHH
Q 001480 1 MTELLVSHHGQKQTLQSPARKSSLGGVQKDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIV 80 (1071)
Q Consensus 1 Ive~LL~~ga~~~~~~~~~~~~~~~~g~TpLh~Aa~~G~~~~v~~lL~lLl~~GadiN~~d~~G~TpLH~Aa~~g~~eiv 80 (1071)
|+++|+++|++..+..+... -...+.|++|.|+..++.++++ +|+++|+|+|.+|..|.||||+|+..|+.+++
T Consensus 164 IVk~Lls~Ga~~~n~~~~~l--~~~~~~t~l~~a~~~~~~eIve----~LIs~GADIN~kD~~G~TpLh~Aa~~g~~eiV 237 (437)
T PHA02795 164 VVEFILNCGIPDENDVKLDL--YKIIQYTRGFLVDEPTVLEIYK----LCIPYIEDINQLDAGGRTLLYRAIYAGYIDLV 237 (437)
T ss_pred HHHHHHhcCCcccccccchh--hhhhccchhHHHHhcCHHHHHH----HHHhCcCCcCcCCCCCCCHHHHHHHcCCHHHH
Confidence 58999999986544321100 0123678999999999999998 99999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCCCCCCccccccccccc--------cccchhhhhccccccccccC
Q 001480 81 RRLLAAGADPDARDGESGWSSLHRALHFG--------HLAVASVLLQSGASITLEDC 129 (1071)
Q Consensus 81 k~LL~~GAd~n~~d~~~G~TpL~~A~~~g--------~~~vv~lLl~~Ga~v~l~d~ 129 (1071)
++|+++||+++.+| ..|+||||+|+..| +.+++++|+++|++++....
T Consensus 238 elLL~~GAdIN~~d-~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gadI~~~~~ 293 (437)
T PHA02795 238 SWLLENGANVNAVM-SNGYTCLDVAVDRGSVIARRETHLKILEILLREPLSIDCIKL 293 (437)
T ss_pred HHHHHCCCCCCCcC-CCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCCCCCchhH
Confidence 99999999999999 88999999999988 46899999999998876443
No 45
>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]
Probab=99.44 E-value=5.9e-14 Score=149.51 Aligned_cols=117 Identities=32% Similarity=0.376 Sum_probs=109.4
Q ss_pred CCCCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCccccc
Q 001480 24 LGGVQKDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLH 103 (1071)
Q Consensus 24 ~~~g~TpLh~Aa~~G~~~~v~~lL~lLl~~GadiN~~d~~G~TpLH~Aa~~g~~eivk~LL~~GAd~n~~d~~~G~TpL~ 103 (1071)
+..|.+|||+||+.|+..+++ .|+..|+.+|..+....||||+|+..||.++|+.||++.+|+|+.+ +.|.||||
T Consensus 31 ddhgfsplhwaakegh~aive----mll~rgarvn~tnmgddtplhlaaahghrdivqkll~~kadvnavn-ehgntplh 105 (448)
T KOG0195|consen 31 DDHGFSPLHWAAKEGHVAIVE----MLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADVNAVN-EHGNTPLH 105 (448)
T ss_pred cccCcchhhhhhhcccHHHHH----HHHhcccccccccCCCCcchhhhhhcccHHHHHHHHHHhcccchhh-ccCCCchh
Confidence 456788999999999999888 8899999999999889999999999999999999999999999999 99999999
Q ss_pred cccccccccchhhhhccccccccccCCCCCCcccCCCCceee
Q 001480 104 RALHFGHLAVASVLLQSGASITLEDCKSRTPVDLLSGPVLQV 145 (1071)
Q Consensus 104 ~A~~~g~~~vv~lLl~~Ga~v~l~d~~G~tpLdl~sg~v~qa 145 (1071)
+||..|.-.+++-|+..|+-+++.+..|.+|+|-..-+++..
T Consensus 106 yacfwgydqiaedli~~ga~v~icnk~g~tpldkakp~l~~~ 147 (448)
T KOG0195|consen 106 YACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKAKPMLKNT 147 (448)
T ss_pred hhhhhcHHHHHHHHHhccceeeecccCCCCchhhhchHHHHH
Confidence 999999999999999999999999999999999877665443
No 46
>PHA02736 Viral ankyrin protein; Provisional
Probab=99.43 E-value=7.8e-14 Score=141.64 Aligned_cols=98 Identities=20% Similarity=0.259 Sum_probs=62.5
Q ss_pred CCCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccC-CCCCcHHHHHHhcCCHHHHHHHHh-cCCCCCCCCCCCCcccc
Q 001480 25 GGVQKDLCLAVREGSLADVESALALLKKNGGNINSRN-IFGLTPLHSAIWRNQVPIVRRLLA-AGADPDARDGESGWSSL 102 (1071)
Q Consensus 25 ~~g~TpLh~Aa~~G~~~~v~~lL~lLl~~GadiN~~d-~~G~TpLH~Aa~~g~~eivk~LL~-~GAd~n~~d~~~G~TpL 102 (1071)
..|.||||+|+..|+.+.++ ++++|+++|+++|.++ ..|.||||+|+..++.+++++|+. .|++++.+| ..|+|||
T Consensus 53 ~~g~t~Lh~a~~~~~~~~~e-~v~~Ll~~gadin~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~-~~g~tpL 130 (154)
T PHA02736 53 RHGKQCVHIVSNPDKADPQE-KLKLLMEWGADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILN-YAFKTPY 130 (154)
T ss_pred CCCCEEEEeecccCchhHHH-HHHHHHHcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcccc-CCCCCHH
Confidence 34556666666666544322 3346666677777666 366777777777777777777765 366776666 5677777
Q ss_pred ccccccccccchhhhhcccccc
Q 001480 103 HRALHFGHLAVASVLLQSGASI 124 (1071)
Q Consensus 103 ~~A~~~g~~~vv~lLl~~Ga~v 124 (1071)
|+|+..++.+++++|+.+|+++
T Consensus 131 ~~A~~~~~~~i~~~Ll~~ga~~ 152 (154)
T PHA02736 131 YVACERHDAKMMNILRAKGAQC 152 (154)
T ss_pred HHHHHcCCHHHHHHHHHcCCCC
Confidence 7777666667777776666654
No 47
>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]
Probab=99.43 E-value=1.1e-13 Score=143.02 Aligned_cols=112 Identities=25% Similarity=0.233 Sum_probs=106.7
Q ss_pred cCCCCCCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCcc
Q 001480 21 KSSLGGVQKDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWS 100 (1071)
Q Consensus 21 ~~~~~~g~TpLh~Aa~~G~~~~v~~lL~lLl~~GadiN~~d~~G~TpLH~Aa~~g~~eivk~LL~~GAd~n~~d~~~G~T 100 (1071)
+.++..|.|||++|+..|++.+|+ +|+..|+|++..-..-.++|++|+..|..+||++||.++.|+|..| .+|.|
T Consensus 154 N~~De~GfTpLiWAaa~G~i~vV~----fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~vdVNvyD-wNGgT 228 (296)
T KOG0502|consen 154 NACDEFGFTPLIWAAAKGHIPVVQ----FLLNSGADPDALGKYRESALSLATRGGYTDIVELLLTREVDVNVYD-WNGGT 228 (296)
T ss_pred cCccccCchHhHHHHhcCchHHHH----HHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCcceec-cCCCc
Confidence 344567899999999999999999 9999999999999999999999999999999999999999999999 78999
Q ss_pred ccccccccccccchhhhhccccccccccCCCCCCccc
Q 001480 101 SLHRALHFGHLAVASVLLQSGASITLEDCKSRTPVDL 137 (1071)
Q Consensus 101 pL~~A~~~g~~~vv~lLl~~Ga~v~l~d~~G~tpLdl 137 (1071)
||-+|++-+|.+|++.|++.|++++..+..|..++|+
T Consensus 229 pLlyAvrgnhvkcve~Ll~sGAd~t~e~dsGy~~mdl 265 (296)
T KOG0502|consen 229 PLLYAVRGNHVKCVESLLNSGADVTQEDDSGYWIMDL 265 (296)
T ss_pred eeeeeecCChHHHHHHHHhcCCCcccccccCCcHHHH
Confidence 9999999999999999999999999999999999998
No 48
>PHA03100 ankyrin repeat protein; Provisional
Probab=99.42 E-value=1.7e-13 Score=163.57 Aligned_cols=124 Identities=25% Similarity=0.333 Sum_probs=92.3
Q ss_pred CHHHHHhCCCCccccCCccccCCCCCCchHHHH-----HHHcCCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHH--h
Q 001480 1 MTELLVSHHGQKQTLQSPARKSSLGGVQKDLCL-----AVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAI--W 73 (1071)
Q Consensus 1 Ive~LL~~ga~~~~~~~~~~~~~~~~g~TpLh~-----Aa~~G~~~~v~~lL~lLl~~GadiN~~d~~G~TpLH~Aa--~ 73 (1071)
+|++||++|++.... ...+.||||+ |+..++.++++ +|+++|+++|..|..|.||||+|+ .
T Consensus 50 ivk~Ll~~g~~~~~~--------~~~~~t~L~~~~~~~a~~~~~~~iv~----~Ll~~ga~i~~~d~~g~tpL~~A~~~~ 117 (480)
T PHA03100 50 VVKILLDNGADINSS--------TKNNSTPLHYLSNIKYNLTDVKEIVK----LLLEYGANVNAPDNNGITPLLYAISKK 117 (480)
T ss_pred HHHHHHHcCCCCCCc--------cccCcCHHHHHHHHHHHhhchHHHHH----HHHHCCCCCCCCCCCCCchhhHHHhcc
Confidence 467777777664321 2345677888 77777777777 777778888777777888888888 7
Q ss_pred cCCHHHHHHHHhcCCCCCCCCCCCCccccccccccc--cccchhhhhccccccccccCCCCCCccc
Q 001480 74 RNQVPIVRRLLAAGADPDARDGESGWSSLHRALHFG--HLAVASVLLQSGASITLEDCKSRTPVDL 137 (1071)
Q Consensus 74 ~g~~eivk~LL~~GAd~n~~d~~~G~TpL~~A~~~g--~~~vv~lLl~~Ga~v~l~d~~G~tpLdl 137 (1071)
.|+.+++++|+++|++++..+ ..|+||||+|+..+ +.+++++|+++|++++..+..|.||+++
T Consensus 118 ~~~~~iv~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL~~ 182 (480)
T PHA03100 118 SNSYSIVEYLLDNGANVNIKN-SDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGYTPLHI 182 (480)
T ss_pred cChHHHHHHHHHcCCCCCccC-CCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCCCHHHH
Confidence 778888888888888877777 67788888887777 7778888888888777777777777655
No 49
>PHA02741 hypothetical protein; Provisional
Probab=99.41 E-value=4.4e-13 Score=138.67 Aligned_cols=101 Identities=20% Similarity=0.174 Sum_probs=92.2
Q ss_pred CCCCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCC-CCCcHHHHHHhcCCHHHHHHHHh-cCCCCCCCCCCCCccc
Q 001480 24 LGGVQKDLCLAVREGSLADVESALALLKKNGGNINSRNI-FGLTPLHSAIWRNQVPIVRRLLA-AGADPDARDGESGWSS 101 (1071)
Q Consensus 24 ~~~g~TpLh~Aa~~G~~~~v~~lL~lLl~~GadiN~~d~-~G~TpLH~Aa~~g~~eivk~LL~-~GAd~n~~d~~~G~Tp 101 (1071)
+..|.||||+|+..|+..++.+++++|+.+|+++|.++. .|+||||+|+..++.+++++||. .|++++..| ..|+||
T Consensus 57 d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n-~~g~tp 135 (169)
T PHA02741 57 DDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCN-ADNKSP 135 (169)
T ss_pred CCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCC-CCCCCH
Confidence 456889999999999987777778899999999999985 99999999999999999999997 599999999 889999
Q ss_pred cccccccccccchhhhhccccccc
Q 001480 102 LHRALHFGHLAVASVLLQSGASIT 125 (1071)
Q Consensus 102 L~~A~~~g~~~vv~lLl~~Ga~v~ 125 (1071)
||+|...++.+++++|+++++...
T Consensus 136 L~~A~~~~~~~iv~~L~~~~~~~~ 159 (169)
T PHA02741 136 FELAIDNEDVAMMQILREIVATSR 159 (169)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhc
Confidence 999999999999999999877643
No 50
>PHA02884 ankyrin repeat protein; Provisional
Probab=99.41 E-value=5.2e-13 Score=149.75 Aligned_cols=110 Identities=16% Similarity=0.178 Sum_probs=94.8
Q ss_pred CHHHHHhCCCCccccCCccccCCCCCCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCccc-CCCCCcHHHHHHhcCCHHH
Q 001480 1 MTELLVSHHGQKQTLQSPARKSSLGGVQKDLCLAVREGSLADVESALALLKKNGGNINSR-NIFGLTPLHSAIWRNQVPI 79 (1071)
Q Consensus 1 Ive~LL~~ga~~~~~~~~~~~~~~~~g~TpLh~Aa~~G~~~~v~~lL~lLl~~GadiN~~-d~~G~TpLH~Aa~~g~~ei 79 (1071)
++++||++|++++.... .....|.||||+|+..++.++++ +|+++|+|+|.+ +..|.||||+|+..++.++
T Consensus 48 ivk~LL~~GAdiN~~~~----~sd~~g~TpLh~Aa~~~~~eivk----lLL~~GADVN~~~~~~g~TpLh~Aa~~~~~ei 119 (300)
T PHA02884 48 IIDAILKLGADPEAPFP----LSENSKTNPLIYAIDCDNDDAAK----LLIRYGADVNRYAEEAKITPLYISVLHGCLKC 119 (300)
T ss_pred HHHHHHHCCCCccccCc----ccCCCCCCHHHHHHHcCCHHHHH----HHHHcCCCcCcccCCCCCCHHHHHHHcCCHHH
Confidence 57999999998653211 01246889999999999999998 899999999996 4689999999999999999
Q ss_pred HHHHHhcCCCCCCCCCCCCccccccccccccccchhhhhc
Q 001480 80 VRRLLAAGADPDARDGESGWSSLHRALHFGHLAVASVLLQ 119 (1071)
Q Consensus 80 vk~LL~~GAd~n~~d~~~G~TpL~~A~~~g~~~vv~lLl~ 119 (1071)
+++|+.+|++++.+| ..|+||||+|+..++..++.++..
T Consensus 120 vklLL~~GAdin~kd-~~G~TpL~~A~~~~~~~~~~~~~~ 158 (300)
T PHA02884 120 LEILLSYGADINIQT-NDMVTPIELALMICNNFLAFMICD 158 (300)
T ss_pred HHHHHHCCCCCCCCC-CCCCCHHHHHHHhCChhHHHHhcC
Confidence 999999999999999 889999999999888888766653
No 51
>PHA02876 ankyrin repeat protein; Provisional
Probab=99.40 E-value=3e-13 Score=168.96 Aligned_cols=107 Identities=21% Similarity=0.256 Sum_probs=66.2
Q ss_pred CCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCC-HHHHHHHHhcCCCCCCCCCCCCcccccc
Q 001480 26 GVQKDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQ-VPIVRRLLAAGADPDARDGESGWSSLHR 104 (1071)
Q Consensus 26 ~g~TpLh~Aa~~G~~~~v~~lL~lLl~~GadiN~~d~~G~TpLH~Aa~~g~-~eivk~LL~~GAd~n~~d~~~G~TpL~~ 104 (1071)
.|.||||+|+..|+.++++ +|+++|++++..+..|.||||+|+..++ ..++++|+++|++++.+| ..|+||||+
T Consensus 374 ~G~TpLh~Aa~~~~~~iv~----~Ll~~gad~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~gadin~~d-~~G~TpLh~ 448 (682)
T PHA02876 374 CDKTPIHYAAVRNNVVIIN----TLLDYGADIEALSQKIGTALHFALCGTNPYMSVKTLIDRGANVNSKN-KDLSTPLHY 448 (682)
T ss_pred CCCCHHHHHHHcCCHHHHH----HHHHCCCCccccCCCCCchHHHHHHcCCHHHHHHHHHhCCCCCCcCC-CCCChHHHH
Confidence 4556666666666665555 5556666666666666666666655443 345666666666666666 566666666
Q ss_pred ccccc-cccchhhhhccccccccccCCCCCCccc
Q 001480 105 ALHFG-HLAVASVLLQSGASITLEDCKSRTPVDL 137 (1071)
Q Consensus 105 A~~~g-~~~vv~lLl~~Ga~v~l~d~~G~tpLdl 137 (1071)
|+..+ +.+++++|+++|++++..+..|.||+.+
T Consensus 449 Aa~~~~~~~iv~lLl~~Gad~n~~d~~g~tpl~~ 482 (682)
T PHA02876 449 ACKKNCKLDVIEMLLDNGADVNAINIQNQYPLLI 482 (682)
T ss_pred HHHhCCcHHHHHHHHHCCCCCCCCCCCCCCHHHH
Confidence 66554 4566666666666666666666666654
No 52
>PHA02946 ankyin-like protein; Provisional
Probab=99.40 E-value=3e-13 Score=160.61 Aligned_cols=125 Identities=19% Similarity=0.298 Sum_probs=87.0
Q ss_pred CHHHHHhCCCCccccCCccccCCCCCCchHHHHHHHcCC--HHHHHHHHHHHHhCCCCCcc-cCCCCCcHHHHHHhcCCH
Q 001480 1 MTELLVSHHGQKQTLQSPARKSSLGGVQKDLCLAVREGS--LADVESALALLKKNGGNINS-RNIFGLTPLHSAIWRNQV 77 (1071)
Q Consensus 1 Ive~LL~~ga~~~~~~~~~~~~~~~~g~TpLh~Aa~~G~--~~~v~~lL~lLl~~GadiN~-~d~~G~TpLH~Aa~~g~~ 77 (1071)
|+++||++|++++.. +..|.||||+|+..++ .++++ +|+++|+++|. .|..|.|||| ||..++.
T Consensus 87 iv~lLL~~GAdin~~--------d~~g~TpLh~A~~~~~~~~e~v~----lLl~~Gadin~~~d~~g~tpL~-aa~~~~~ 153 (446)
T PHA02946 87 IVAMLLTHGADPNAC--------DKQHKTPLYYLSGTDDEVIERIN----LLVQYGAKINNSVDEEGCGPLL-ACTDPSE 153 (446)
T ss_pred HHHHHHHCcCCCCCC--------CCCCCCHHHHHHHcCCchHHHHH----HHHHcCCCcccccCCCCCcHHH-HHHCCCh
Confidence 578888888776532 2456788888877653 45555 77777777774 5677777776 5556777
Q ss_pred HHHHHHHhcCCCCCCCCCCCCcccccccccccc--ccchhhhhccccccccccCCCCCCcccCC
Q 001480 78 PIVRRLLAAGADPDARDGESGWSSLHRALHFGH--LAVASVLLQSGASITLEDCKSRTPVDLLS 139 (1071)
Q Consensus 78 eivk~LL~~GAd~n~~d~~~G~TpL~~A~~~g~--~~vv~lLl~~Ga~v~l~d~~G~tpLdl~s 139 (1071)
+++++|++.|++++.+| ..|+||||+|+..++ .+++++|+++|++++.+|..|.||++++.
T Consensus 154 ~vv~~Ll~~gad~~~~d-~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa 216 (446)
T PHA02946 154 RVFKKIMSIGFEARIVD-KFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVC 216 (446)
T ss_pred HHHHHHHhccccccccC-CCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence 77777777777777777 667777777665443 46677777777777777777777777654
No 53
>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]
Probab=99.38 E-value=4.1e-13 Score=168.66 Aligned_cols=104 Identities=37% Similarity=0.551 Sum_probs=55.2
Q ss_pred CchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCcccccccc
Q 001480 27 VQKDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRAL 106 (1071)
Q Consensus 27 g~TpLh~Aa~~G~~~~v~~lL~lLl~~GadiN~~d~~G~TpLH~Aa~~g~~eivk~LL~~GAd~n~~d~~~G~TpL~~A~ 106 (1071)
+.++||.|+..+....+. .++++|++++.++.+|.||||.||.+|+.++|++||++|||++.++ +.|+||||.|+
T Consensus 507 ~l~~lhla~~~~~v~~~~----~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~-~~G~TPLH~Aa 581 (1143)
T KOG4177|consen 507 GLTPLHLAADEDTVKVAK----ILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKD-KLGYTPLHQAA 581 (1143)
T ss_pred ccchhhhhhhhhhHHHHH----HHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhCCccccccC-CCCCChhhHHH
Confidence 444555555555544444 4445555555555555555555555555555555555555555555 45555555555
Q ss_pred ccccccchhhhhccccccccccCCCCCCc
Q 001480 107 HFGHLAVASVLLQSGASITLEDCKSRTPV 135 (1071)
Q Consensus 107 ~~g~~~vv~lLl~~Ga~v~l~d~~G~tpL 135 (1071)
..|+.+|+.+|+++|+++|..+.+|.||+
T Consensus 582 ~~G~~~i~~LLlk~GA~vna~d~~g~TpL 610 (1143)
T KOG4177|consen 582 QQGHNDIAELLLKHGASVNAADLDGFTPL 610 (1143)
T ss_pred HcChHHHHHHHHHcCCCCCcccccCcchh
Confidence 55555555555555555555555555554
No 54
>PHA02730 ankyrin-like protein; Provisional
Probab=99.38 E-value=4.4e-13 Score=162.76 Aligned_cols=125 Identities=18% Similarity=0.143 Sum_probs=106.7
Q ss_pred CHHHHHhCCCCccccCCccccCCCCCCchHHHHHHHcCC----HHHHHHHHHHHHhCCC--CCcccCCCCCcHHHH---H
Q 001480 1 MTELLVSHHGQKQTLQSPARKSSLGGVQKDLCLAVREGS----LADVESALALLKKNGG--NINSRNIFGLTPLHS---A 71 (1071)
Q Consensus 1 Ive~LL~~ga~~~~~~~~~~~~~~~~g~TpLh~Aa~~G~----~~~v~~lL~lLl~~Ga--diN~~d~~G~TpLH~---A 71 (1071)
|+++||+||++.+. ...|.||||+|+..++ .++++ +|+++|+ ++|.+|..|.||||. |
T Consensus 361 IvelLIs~GAdIN~---------k~~G~TpLH~Aa~~nnn~i~~eIve----lLIs~Ga~~dIN~kd~~G~T~Lh~~i~a 427 (672)
T PHA02730 361 ILRCMLDNGATMDK---------TTDNNYPLHDYFVNNNNIVDVNVVR----FIVENNGHMAINHVSNNGRLCMYGLILS 427 (672)
T ss_pred HHHHHHHCCCCCCc---------CCCCCcHHHHHHHHcCCcchHHHHH----HHHHcCCCccccccccCCCchHhHHHHH
Confidence 58999999998662 1357899999998875 78888 9999998 699999999999994 3
Q ss_pred HhcC---------CHHHHHHHHhcCCCCCCCCCCCCccccccccccccccchhhhhccccccccccC-CCCCCcccCC
Q 001480 72 IWRN---------QVPIVRRLLAAGADPDARDGESGWSSLHRALHFGHLAVASVLLQSGASITLEDC-KSRTPVDLLS 139 (1071)
Q Consensus 72 a~~g---------~~eivk~LL~~GAd~n~~d~~~G~TpL~~A~~~g~~~vv~lLl~~Ga~v~l~d~-~G~tpLdl~s 139 (1071)
...+ ..+++++|+.+||+++.+| ..|+||||+|+..++.+++++|+.+|++++..+. .|.+|++..+
T Consensus 428 ~~~n~~~~~~e~~~~~ivk~LIs~GADINakD-~~G~TPLh~Aa~~~~~eive~LI~~GAdIN~~d~~~g~TaL~~Aa 504 (672)
T PHA02730 428 RFNNCGYHCYETILIDVFDILSKYMDDIDMID-NENKTLLYYAVDVNNIQFARRLLEYGASVNTTSRSIINTAIQKSS 504 (672)
T ss_pred HhccccccccchhHHHHHHHHHhcccchhccC-CCCCCHHHHHHHhCCHHHHHHHHHCCCCCCCCCCcCCcCHHHHHH
Confidence 3332 2356999999999999999 8899999999999999999999999999999997 5899987653
No 55
>PHA02917 ankyrin-like protein; Provisional
Probab=99.37 E-value=6.3e-13 Score=164.33 Aligned_cols=129 Identities=13% Similarity=0.078 Sum_probs=96.7
Q ss_pred CHHHHHhCCCCccccCCccccCCCCCCchHHHHHHHcCCHHHHH-------------------------------HHHHH
Q 001480 1 MTELLVSHHGQKQTLQSPARKSSLGGVQKDLCLAVREGSLADVE-------------------------------SALAL 49 (1071)
Q Consensus 1 Ive~LL~~ga~~~~~~~~~~~~~~~~g~TpLh~Aa~~G~~~~v~-------------------------------~lL~l 49 (1071)
+|++||++|+++.. .+..|.||||+|+..|+.++++ +++++
T Consensus 50 ~v~~Ll~~ga~v~~--------~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~~~~~~~~~a~~~~~~e~vk~ 121 (661)
T PHA02917 50 VVKLLLDSGTNPLH--------KNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNINDFNIFSYMKSKNVDVDLIKV 121 (661)
T ss_pred HHHHHHHCCCCccc--------cCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCCCcchHHHHHhhcCCHHHHHH
Confidence 47899998887642 2356788888888877643321 33457
Q ss_pred HHhCCCCCcccCCCCCcHHHHHH--hcCCHHHHHHHHhcCCCCCCCCC--CCC-----------ccccccccc-------
Q 001480 50 LKKNGGNINSRNIFGLTPLHSAI--WRNQVPIVRRLLAAGADPDARDG--ESG-----------WSSLHRALH------- 107 (1071)
Q Consensus 50 Ll~~GadiN~~d~~G~TpLH~Aa--~~g~~eivk~LL~~GAd~n~~d~--~~G-----------~TpL~~A~~------- 107 (1071)
|+++|+|+|.+|..|+||||+|+ ..|+.+++++||++||+++.+|. ..| +||||+|+.
T Consensus 122 Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~ 201 (661)
T PHA02917 122 LVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSES 201 (661)
T ss_pred HHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCccccccccccccccccccccccccHHHHHHhhcccccc
Confidence 78888888888888888888543 46788888888888888876541 234 488888864
Q ss_pred ----cccccchhhhhccccccccccCCCCCCccc
Q 001480 108 ----FGHLAVASVLLQSGASITLEDCKSRTPVDL 137 (1071)
Q Consensus 108 ----~g~~~vv~lLl~~Ga~v~l~d~~G~tpLdl 137 (1071)
.++.+++++|+++|++++.++..|+||+++
T Consensus 202 ~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~ 235 (661)
T PHA02917 202 DTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQY 235 (661)
T ss_pred cccccCcHHHHHHHHHCCCCcccCCCCCCcHHHH
Confidence 457788888888888888888888888866
No 56
>PHA02989 ankyrin repeat protein; Provisional
Probab=99.36 E-value=9.2e-13 Score=158.58 Aligned_cols=124 Identities=26% Similarity=0.422 Sum_probs=104.8
Q ss_pred CHHHHHhCCCCccccCCccccCCCCCCchHHHHHHH------cCCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhc
Q 001480 1 MTELLVSHHGQKQTLQSPARKSSLGGVQKDLCLAVR------EGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWR 74 (1071)
Q Consensus 1 Ive~LL~~ga~~~~~~~~~~~~~~~~g~TpLh~Aa~------~G~~~~v~~lL~lLl~~GadiN~~d~~G~TpLH~Aa~~ 74 (1071)
||++||++|++++.. ..+.||||.|+. .++.++++ +|+++|+|+|.+|..|.||||.|+..
T Consensus 52 iv~~Ll~~GAdvn~~---------~~~~tpL~~a~~~~~~~~~~~~~iv~----~Ll~~Gadin~~d~~g~tpL~~a~~~ 118 (494)
T PHA02989 52 IVKLLIDNGADVNYK---------GYIETPLCAVLRNREITSNKIKKIVK----LLLKFGADINLKTFNGVSPIVCFIYN 118 (494)
T ss_pred HHHHHHHcCCCccCC---------CCCCCcHHHHHhccCcchhhHHHHHH----HHHHCCCCCCCCCCCCCcHHHHHHHh
Confidence 589999999986632 134689999875 35566666 99999999999999999999988765
Q ss_pred ---CCHHHHHHHHhcCCCC-CCCCCCCCccccccccc--cccccchhhhhcccccccc-ccCCCCCCcccC
Q 001480 75 ---NQVPIVRRLLAAGADP-DARDGESGWSSLHRALH--FGHLAVASVLLQSGASITL-EDCKSRTPVDLL 138 (1071)
Q Consensus 75 ---g~~eivk~LL~~GAd~-n~~d~~~G~TpL~~A~~--~g~~~vv~lLl~~Ga~v~l-~d~~G~tpLdl~ 138 (1071)
++.+++++|+++|||+ +.+| ..|+||||+|+. .++.+++++|+++|++++. .+..|.||+.+.
T Consensus 119 ~~~~~~eiv~~Ll~~Gadin~~~d-~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a 188 (494)
T PHA02989 119 SNINNCDMLRFLLSKGINVNDVKN-SRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIY 188 (494)
T ss_pred cccCcHHHHHHHHHCCCCcccccC-CCCCCHHHHHHHhccCCHHHHHHHHHcCCCccccccccCCChHHHH
Confidence 6899999999999999 7888 889999999865 4688999999999999988 677899998653
No 57
>KOG0510 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.36 E-value=6.6e-13 Score=158.05 Aligned_cols=108 Identities=31% Similarity=0.352 Sum_probs=63.6
Q ss_pred CCCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHh-cC-CCCCCCCCCCCcccc
Q 001480 25 GGVQKDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLA-AG-ADPDARDGESGWSSL 102 (1071)
Q Consensus 25 ~~g~TpLh~Aa~~G~~~~v~~lL~lLl~~GadiN~~d~~G~TpLH~Aa~~g~~eivk~LL~-~G-Ad~n~~d~~~G~TpL 102 (1071)
++|.||||+||+.|+.+.++ .|+..|+++|.++.++.||||.||.+|+..+|+.||+ .| ..+|..| ..|.|||
T Consensus 271 ~dg~tpLH~a~r~G~~~svd----~Ll~~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D-~~g~tpL 345 (929)
T KOG0510|consen 271 NDGCTPLHYAARQGGPESVD----NLLGFGASINSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESD-LHGMTPL 345 (929)
T ss_pred ccCCchHHHHHHcCChhHHH----HHHHcCCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCcccccccc-ccCCCch
Confidence 45556666666666666665 5555666666666666666666666666666666665 33 3455555 5566666
Q ss_pred ccccccccccchhhhhccccccc---cccCCCCCCccc
Q 001480 103 HRALHFGHLAVASVLLQSGASIT---LEDCKSRTPVDL 137 (1071)
Q Consensus 103 ~~A~~~g~~~vv~lLl~~Ga~v~---l~d~~G~tpLdl 137 (1071)
|+|+..||..|+++|++.|+... ..|..|.|++++
T Consensus 346 Hlaa~~gH~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~ 383 (929)
T KOG0510|consen 346 HLAAKSGHDRVVQLLLNKGALFLNMSEADSDGNTALHL 383 (929)
T ss_pred hhhhhcCHHHHHHHHHhcChhhhcccccccCCchhhhH
Confidence 66666666666666666665554 235556666555
No 58
>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.35 E-value=8.2e-13 Score=152.04 Aligned_cols=127 Identities=28% Similarity=0.411 Sum_probs=111.7
Q ss_pred CHHHHHhCCCCccccCCccccCCCCCCchHHHHHHHcCCHHHHHHHHHHHHhCCCC------------------------
Q 001480 1 MTELLVSHHGQKQTLQSPARKSSLGGVQKDLCLAVREGSLADVESALALLKKNGGN------------------------ 56 (1071)
Q Consensus 1 Ive~LL~~ga~~~~~~~~~~~~~~~~g~TpLh~Aa~~G~~~~v~~lL~lLl~~Gad------------------------ 56 (1071)
||+||+++|++++.. .+.+|||||.|+.+|++.++. +|+.+|++
T Consensus 88 ~v~~l~e~ga~Vn~~--------d~e~wtPlhaaascg~~~i~~----~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l 155 (527)
T KOG0505|consen 88 MVKFLVENGANVNAQ--------DNEGWTPLHAAASCGYLNIVE----YLIQHGANLLAVNSDGNMPYDLAEDEATLDVL 155 (527)
T ss_pred HHHHHHHhcCCcccc--------ccccCCcchhhcccccHHHHH----HHHHhhhhhhhccCCCCCccccccCcchhHHH
Confidence 689999999986643 567899999999999999998 44445444
Q ss_pred -----------------------------------CcccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCccc
Q 001480 57 -----------------------------------INSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSS 101 (1071)
Q Consensus 57 -----------------------------------iN~~d~~G~TpLH~Aa~~g~~eivk~LL~~GAd~n~~d~~~G~Tp 101 (1071)
.+.++..|-|+||.|+..|..++.++|+.+|.+++++| .+||||
T Consensus 156 ~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~~~D-~dgWtP 234 (527)
T KOG0505|consen 156 ETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHVAAANGYTEVAALLLQAGYSVNIKD-YDGWTP 234 (527)
T ss_pred HHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHHHHhhhHHHHHHHHHHhccCccccc-ccCCCc
Confidence 34445557899999999999999999999999999999 889999
Q ss_pred cccccccccccchhhhhccccccccccCCCCCCcccCCC
Q 001480 102 LHRALHFGHLAVASVLLQSGASITLEDCKSRTPVDLLSG 140 (1071)
Q Consensus 102 L~~A~~~g~~~vv~lLl~~Ga~v~l~d~~G~tpLdl~sg 140 (1071)
||.|+++|+.+++++|+.+|++++.....|.+|+|+.-.
T Consensus 235 lHAAA~Wg~~~~~elL~~~ga~~d~~t~~g~~p~dv~de 273 (527)
T KOG0505|consen 235 LHAAAHWGQEDACELLVEHGADMDAKTKMGETPLDVADE 273 (527)
T ss_pred ccHHHHhhhHhHHHHHHHhhcccchhhhcCCCCccchhh
Confidence 999999999999999999999999999999999998554
No 59
>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]
Probab=99.35 E-value=8.4e-13 Score=165.93 Aligned_cols=125 Identities=30% Similarity=0.441 Sum_probs=112.5
Q ss_pred HHHHHhCCCCccccCCccccCCCCCCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHH
Q 001480 2 TELLVSHHGQKQTLQSPARKSSLGGVQKDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVR 81 (1071)
Q Consensus 2 ve~LL~~ga~~~~~~~~~~~~~~~~g~TpLh~Aa~~G~~~~v~~lL~lLl~~GadiN~~d~~G~TpLH~Aa~~g~~eivk 81 (1071)
++.|+++|+.... ....+.||||.||.+|+...|+ +|+++|+|++.++..|+||||.||..|+.+|+.
T Consensus 523 ~~~l~~~ga~v~~--------~~~r~~TpLh~A~~~g~v~~Vk----fLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~ 590 (1143)
T KOG4177|consen 523 AKILLEHGANVDL--------RTGRGYTPLHVAVHYGNVDLVK----FLLEHGADVNAKDKLGYTPLHQAAQQGHNDIAE 590 (1143)
T ss_pred HHHHhhcCCceeh--------hcccccchHHHHHhcCCchHHH----HhhhCCccccccCCCCCChhhHHHHcChHHHHH
Confidence 4567777776442 2456889999999999999999 999999999999999999999999999999999
Q ss_pred HHHhcCCCCCCCCCCCCccccccccccccccchhhhhccccc-----cccccCCCCCCcccCC
Q 001480 82 RLLAAGADPDARDGESGWSSLHRALHFGHLAVASVLLQSGAS-----ITLEDCKSRTPVDLLS 139 (1071)
Q Consensus 82 ~LL~~GAd~n~~d~~~G~TpL~~A~~~g~~~vv~lLl~~Ga~-----v~l~d~~G~tpLdl~s 139 (1071)
+|+++||++|..| .+|.|||++|...|+.+++++|+..++. ....+..|.+|.|+..
T Consensus 591 LLlk~GA~vna~d-~~g~TpL~iA~~lg~~~~~k~l~~~~~~~~~~~~~~e~~~g~~p~~v~e 652 (1143)
T KOG4177|consen 591 LLLKHGASVNAAD-LDGFTPLHIAVRLGYLSVVKLLKVVTATPAATDPVKENRKGAVPEDVAE 652 (1143)
T ss_pred HHHHcCCCCCccc-ccCcchhHHHHHhcccchhhHHHhccCccccccchhhhhcccChhhHHH
Confidence 9999999999999 8999999999999999999999999988 7778888999998743
No 60
>KOG0510 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.34 E-value=9.1e-13 Score=156.88 Aligned_cols=112 Identities=27% Similarity=0.369 Sum_probs=101.1
Q ss_pred CCCCCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCC---CCCCCCCc
Q 001480 23 SLGGVQKDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPD---ARDGESGW 99 (1071)
Q Consensus 23 ~~~~g~TpLh~Aa~~G~~~~v~~lL~lLl~~GadiN~~d~~G~TpLH~Aa~~g~~eivk~LL~~GAd~n---~~d~~~G~ 99 (1071)
.+.++.||||.||.+|++.+++.+|+ ...-..+|..|..|.||||+|+..||..++++||..||+.. ..| .+|.
T Consensus 302 kn~d~~spLH~AA~yg~~ntv~rLL~--~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~~~~e~D-~dg~ 378 (929)
T KOG0510|consen 302 KNKDEESPLHFAAIYGRINTVERLLQ--ESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALFLNMSEAD-SDGN 378 (929)
T ss_pred cCCCCCCchHHHHHcccHHHHHHHHh--CcCccccccccccCCCchhhhhhcCHHHHHHHHHhcChhhhcccccc-cCCc
Confidence 45689999999999999999995443 12346789999999999999999999999999999999887 457 8899
Q ss_pred cccccccccccccchhhhhccccccccccCCCCCCccc
Q 001480 100 SSLHRALHFGHLAVASVLLQSGASITLEDCKSRTPVDL 137 (1071)
Q Consensus 100 TpL~~A~~~g~~~vv~lLl~~Ga~v~l~d~~G~tpLdl 137 (1071)
||||.|+..|+..++++|+.+|+++..++..|.+++|+
T Consensus 379 TaLH~Aa~~g~~~av~~Li~~Ga~I~~~n~~g~SA~~~ 416 (929)
T KOG0510|consen 379 TALHLAAKYGNTSAVQKLISHGADIGVKNKKGKSAFDT 416 (929)
T ss_pred hhhhHHHHhccHHHHHHHHHcCCceeeccccccccccc
Confidence 99999999999999999999999999999999999997
No 61
>PHA02736 Viral ankyrin protein; Provisional
Probab=99.34 E-value=3.5e-13 Score=136.90 Aligned_cols=112 Identities=19% Similarity=0.184 Sum_probs=91.5
Q ss_pred CCCCchHHHHHHHcCCHHHHHHHHHHHHhC-----CCCCcccCCCCCcHHHHHHhcCCHH---HHHHHHhcCCCCCCCCC
Q 001480 24 LGGVQKDLCLAVREGSLADVESALALLKKN-----GGNINSRNIFGLTPLHSAIWRNQVP---IVRRLLAAGADPDARDG 95 (1071)
Q Consensus 24 ~~~g~TpLh~Aa~~G~~~~v~~lL~lLl~~-----GadiN~~d~~G~TpLH~Aa~~g~~e---ivk~LL~~GAd~n~~d~ 95 (1071)
+..|.||||+||+.|+...+. .+... +..++.+|..|.||||+|+..++.+ ++++|+++|++++.+|.
T Consensus 14 d~~g~tpLh~A~~~g~~~~l~----~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~ 89 (154)
T PHA02736 14 DIEGENILHYLCRNGGVTDLL----AFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKER 89 (154)
T ss_pred CCCCCCHHHHHHHhCCHHHHH----HHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCccccCC
Confidence 457899999999999842221 11111 1124457899999999999999874 68999999999999984
Q ss_pred CCCccccccccccccccchhhhhc-cccccccccCCCCCCcccCC
Q 001480 96 ESGWSSLHRALHFGHLAVASVLLQ-SGASITLEDCKSRTPVDLLS 139 (1071)
Q Consensus 96 ~~G~TpL~~A~~~g~~~vv~lLl~-~Ga~v~l~d~~G~tpLdl~s 139 (1071)
..|+||||+|+..++.+++++|+. .|++++..+..|+||++++.
T Consensus 90 ~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~ 134 (154)
T PHA02736 90 VFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVAC 134 (154)
T ss_pred CCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHH
Confidence 489999999999999999999997 59999999999999997754
No 62
>PHA02876 ankyrin repeat protein; Provisional
Probab=99.32 E-value=2.2e-12 Score=161.25 Aligned_cols=124 Identities=27% Similarity=0.306 Sum_probs=88.6
Q ss_pred HHHHHhCCCCccccCCccccCCCCCCchHHHHHHHcCCHH-HHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcC-CHHH
Q 001480 2 TELLVSHHGQKQTLQSPARKSSLGGVQKDLCLAVREGSLA-DVESALALLKKNGGNINSRNIFGLTPLHSAIWRN-QVPI 79 (1071)
Q Consensus 2 ve~LL~~ga~~~~~~~~~~~~~~~~g~TpLh~Aa~~G~~~-~v~~lL~lLl~~GadiN~~d~~G~TpLH~Aa~~g-~~ei 79 (1071)
+++|+++|.+.+.. +..|.||||+|+..++.. +++ +|++.|+++|.+|..|.||||+|+..| +.++
T Consensus 256 ~~~Ll~~g~~vn~~--------d~~g~TpLh~Aa~~~~~~~iv~----lLl~~gadin~~d~~g~TpLh~Aa~~g~~~~~ 323 (682)
T PHA02876 256 SLLLYDAGFSVNSI--------DDCKNTPLHHASQAPSLSRLVP----KLLERGADVNAKNIKGETPLYLMAKNGYDTEN 323 (682)
T ss_pred HHHHHHCCCCCCCC--------CCCCCCHHHHHHhCCCHHHHHH----HHHHCCCCCCCcCCCCCCHHHHHHHhCCCHHH
Confidence 46777776654422 235677888888777753 444 677778888888877888888888777 4777
Q ss_pred HHHHHhcCCCCCCCCCCCCcccccccccc-ccccchhhhhccccccccccCCCCCCcccC
Q 001480 80 VRRLLAAGADPDARDGESGWSSLHRALHF-GHLAVASVLLQSGASITLEDCKSRTPVDLL 138 (1071)
Q Consensus 80 vk~LL~~GAd~n~~d~~~G~TpL~~A~~~-g~~~vv~lLl~~Ga~v~l~d~~G~tpLdl~ 138 (1071)
+++|+..|++++..| ..|+||||+|+.. ++.+++.+|+++|++++.++..|.||++++
T Consensus 324 v~~Ll~~gadin~~d-~~g~TpLh~A~~~~~~~~iv~lLl~~gadin~~d~~G~TpLh~A 382 (682)
T PHA02876 324 IRTLIMLGADVNAAD-RLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYA 382 (682)
T ss_pred HHHHHHcCCCCCCcc-cCCCcHHHHHHHhCCcHHHHHHHHHcCCCCccCCCCCCCHHHHH
Confidence 777777777777777 6777777777764 356677777777777777777777777664
No 63
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=99.26 E-value=5e-12 Score=161.06 Aligned_cols=108 Identities=26% Similarity=0.292 Sum_probs=95.9
Q ss_pred CCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCccccccc
Q 001480 26 GVQKDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRA 105 (1071)
Q Consensus 26 ~g~TpLh~Aa~~G~~~~v~~lL~lLl~~GadiN~~d~~G~TpLH~Aa~~g~~eivk~LL~~GAd~n~~d~~~G~TpL~~A 105 (1071)
++.++||.||..|+.+.++ .|++.|+|+|.+|..|+||||+||..|+.+++++|+++|++++.+| .+|+||||+|
T Consensus 524 ~~~~~L~~Aa~~g~~~~l~----~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d-~~G~TpL~~A 598 (823)
T PLN03192 524 NMASNLLTVASTGNAALLE----ELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRD-ANGNTALWNA 598 (823)
T ss_pred cchhHHHHHHHcCCHHHHH----HHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcC-CCCCCHHHHH
Confidence 4568899999999999888 7889999999999999999999999999999999999999999999 8899999866
Q ss_pred ccccc-------------------------------ccchhhhhccccccccccCCCCCCcccC
Q 001480 106 LHFGH-------------------------------LAVASVLLQSGASITLEDCKSRTPVDLL 138 (1071)
Q Consensus 106 ~~~g~-------------------------------~~vv~lLl~~Ga~v~l~d~~G~tpLdl~ 138 (1071)
+..|| .+++++|+++|++++..|..|.||++++
T Consensus 599 ~~~g~~~iv~~L~~~~~~~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A 662 (823)
T PLN03192 599 ISAKHHKIFRILYHFASISDPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVA 662 (823)
T ss_pred HHhCCHHHHHHHHhcCcccCcccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence 55554 4556667788999999999999999774
No 64
>PHA02917 ankyrin-like protein; Provisional
Probab=99.25 E-value=7.7e-12 Score=154.76 Aligned_cols=111 Identities=20% Similarity=0.258 Sum_probs=93.3
Q ss_pred CHHHHHhCCCCccccCCccccCCCCCCchHHHHHH--HcCCHHHHHHHHHHHHhCCCCCcccCC---CC-----------
Q 001480 1 MTELLVSHHGQKQTLQSPARKSSLGGVQKDLCLAV--REGSLADVESALALLKKNGGNINSRNI---FG----------- 64 (1071)
Q Consensus 1 Ive~LL~~ga~~~~~~~~~~~~~~~~g~TpLh~Aa--~~G~~~~v~~lL~lLl~~GadiN~~d~---~G----------- 64 (1071)
||++||++|++.+.. +..|.||||+|+ ..|+.++++ +|+++|+++|.+|. .|
T Consensus 118 ~vk~Ll~~Gadin~~--------d~~g~T~L~~~~a~~~~~~eivk----lLi~~Ga~vn~~d~~~~~g~~~~~~~~~~~ 185 (661)
T PHA02917 118 LIKVLVEHGFDLSVK--------CENHRSVIENYVMTDDPVPEIID----LFIENGCSVLYEDEDDEYGYAYDDYQPRNC 185 (661)
T ss_pred HHHHHHHcCCCCCcc--------CCCCccHHHHHHHccCCCHHHHH----HHHHcCCCcccccccccccccccccccccc
Confidence 589999988886532 346789999654 468999999 99999999987653 34
Q ss_pred CcHHHHHHh-----------cCCHHHHHHHHhcCCCCCCCCCCCCccccccccccccc--cchhhhhccccccc
Q 001480 65 LTPLHSAIW-----------RNQVPIVRRLLAAGADPDARDGESGWSSLHRALHFGHL--AVASVLLQSGASIT 125 (1071)
Q Consensus 65 ~TpLH~Aa~-----------~g~~eivk~LL~~GAd~n~~d~~~G~TpL~~A~~~g~~--~vv~lLl~~Ga~v~ 125 (1071)
.||||+|+. +++.+++++|+++|||++.+| .+|+||||+|++.|+. +++++|++ |++++
T Consensus 186 ~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d-~~G~TpLh~A~~~g~~~~eivk~Li~-g~d~~ 257 (661)
T PHA02917 186 GTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSID-KNYCTALQYYIKSSHIDIDIVKLLMK-GIDNT 257 (661)
T ss_pred ccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCC-CCCCcHHHHHHHcCCCcHHHHHHHHh-CCccc
Confidence 599999986 568999999999999999999 8999999999999986 69999975 87765
No 65
>KOG0514 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.25 E-value=6.9e-12 Score=138.07 Aligned_cols=91 Identities=32% Similarity=0.334 Sum_probs=85.7
Q ss_pred CCCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHhc-CCCCCCCCCCCCccccc
Q 001480 25 GGVQKDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAA-GADPDARDGESGWSSLH 103 (1071)
Q Consensus 25 ~~g~TpLh~Aa~~G~~~~v~~lL~lLl~~GadiN~~d~~G~TpLH~Aa~~g~~eivk~LL~~-GAd~n~~d~~~G~TpL~ 103 (1071)
..|+|+|++|+.+|+.++|+ .|+.+|+|||.+|.+|.|+||+||.+||.+|+++||.. ++|+...| .+|-|+|.
T Consensus 338 Q~gQTALMLAVSHGr~d~vk----~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD-~DgSTAl~ 412 (452)
T KOG0514|consen 338 QHGQTALMLAVSHGRVDMVK----ALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTD-VDGSTALS 412 (452)
T ss_pred hhcchhhhhhhhcCcHHHHH----HHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhccCcccceeec-CCCchhhh
Confidence 35899999999999999999 88899999999999999999999999999999999987 79999999 89999999
Q ss_pred cccccccccchhhhhcc
Q 001480 104 RALHFGHLAVASVLLQS 120 (1071)
Q Consensus 104 ~A~~~g~~~vv~lLl~~ 120 (1071)
+|...||.+|.-+|..+
T Consensus 413 IAleagh~eIa~mlYa~ 429 (452)
T KOG0514|consen 413 IALEAGHREIAVMLYAH 429 (452)
T ss_pred hHHhcCchHHHHHHHHH
Confidence 99999999999888754
No 66
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=99.24 E-value=1.8e-11 Score=112.33 Aligned_cols=78 Identities=33% Similarity=0.440 Sum_probs=67.2
Q ss_pred CHHHHHhCCCCccccCCccccCCCCCCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHH
Q 001480 1 MTELLVSHHGQKQTLQSPARKSSLGGVQKDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIV 80 (1071)
Q Consensus 1 Ive~LL~~ga~~~~~~~~~~~~~~~~g~TpLh~Aa~~G~~~~v~~lL~lLl~~GadiN~~d~~G~TpLH~Aa~~g~~eiv 80 (1071)
++++|++.+.+... |.||||+|+..|+.++++ +|+++|+++|.+|..|+||||+|+..|+.+++
T Consensus 12 ~~~~ll~~~~~~~~------------~~~~l~~A~~~~~~~~~~----~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~ 75 (89)
T PF12796_consen 12 ILKFLLEKGADINL------------GNTALHYAAENGNLEIVK----LLLENGADINSQDKNGNTALHYAAENGNLEIV 75 (89)
T ss_dssp HHHHHHHTTSTTTS------------SSBHHHHHHHTTTHHHHH----HHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHH
T ss_pred HHHHHHHCcCCCCC------------CCCHHHHHHHcCCHHHHH----HHHHhcccccccCCCCCCHHHHHHHcCCHHHH
Confidence 47889996644321 568999999999999999 88899999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCC
Q 001480 81 RRLLAAGADPDARD 94 (1071)
Q Consensus 81 k~LL~~GAd~n~~d 94 (1071)
++|+++|++++.+|
T Consensus 76 ~~Ll~~g~~~~~~n 89 (89)
T PF12796_consen 76 KLLLEHGADVNIRN 89 (89)
T ss_dssp HHHHHTTT-TTSS-
T ss_pred HHHHHcCCCCCCcC
Confidence 99999999999876
No 67
>PHA02792 ankyrin-like protein; Provisional
Probab=99.24 E-value=8.2e-12 Score=150.43 Aligned_cols=124 Identities=15% Similarity=0.128 Sum_probs=108.2
Q ss_pred CHHHHHhCCCCccccCCccccCCCCCCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCC--CcHHHHHHhcCCH-
Q 001480 1 MTELLVSHHGQKQTLQSPARKSSLGGVQKDLCLAVREGSLADVESALALLKKNGGNINSRNIFG--LTPLHSAIWRNQV- 77 (1071)
Q Consensus 1 Ive~LL~~ga~~~~~~~~~~~~~~~~g~TpLh~Aa~~G~~~~v~~lL~lLl~~GadiN~~d~~G--~TpLH~Aa~~g~~- 77 (1071)
++++||++|++... . .....+|.||..|+.++++ +|+++|||+|.+|..| .||||+|+.....
T Consensus 323 iIK~LId~Ga~~~r--~--------~~~n~~~~Aa~~gn~eIVe----lLIs~GADIN~kD~~g~~~TpLh~A~~n~~~~ 388 (631)
T PHA02792 323 VIKCMIDEGATLYR--F--------KHINKYFQKFDNRDPKVVE----YILKNGNVVVEDDDNIINIMPLFPTLSIHESD 388 (631)
T ss_pred HHHHHHHCCCcccc--C--------CcchHHHHHHHcCCHHHHH----HHHHcCCchhhhcCCCCChhHHHHHHHhccHh
Confidence 57999999998541 1 1234599999999999999 8999999999999775 6999998876654
Q ss_pred --HHHHHHHhcCCCCCCCCCCCCccccccccccccccchhhhhccccccccccCCCCCCcccCC
Q 001480 78 --PIVRRLLAAGADPDARDGESGWSSLHRALHFGHLAVASVLLQSGASITLEDCKSRTPVDLLS 139 (1071)
Q Consensus 78 --eivk~LL~~GAd~n~~d~~~G~TpL~~A~~~g~~~vv~lLl~~Ga~v~l~d~~G~tpLdl~s 139 (1071)
+++++|+++||+++.+| ..|+||||+|+..++.+++++|+++|++++.++..|.||++++.
T Consensus 389 v~~IlklLIs~GADIN~kD-~~G~TPLh~Aa~~~n~eivelLLs~GADIN~kD~~G~TpL~~A~ 451 (631)
T PHA02792 389 VLSILKLCKPYIDDINKID-KHGRSILYYCIESHSVSLVEWLIDNGADINITTKYGSTCIGICV 451 (631)
T ss_pred HHHHHHHHHhcCCcccccc-ccCcchHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHH
Confidence 46899999999999999 88999999999999999999999999999999999999998754
No 68
>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]
Probab=99.24 E-value=3e-12 Score=132.61 Aligned_cols=121 Identities=29% Similarity=0.373 Sum_probs=108.5
Q ss_pred CHHHHHhCCCCccccCCccccCCCCCCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHH
Q 001480 1 MTELLVSHHGQKQTLQSPARKSSLGGVQKDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIV 80 (1071)
Q Consensus 1 Ive~LL~~ga~~~~~~~~~~~~~~~~g~TpLh~Aa~~G~~~~v~~lL~lLl~~GadiN~~d~~G~TpLH~Aa~~g~~eiv 80 (1071)
+|+|||..|+++..+.. ...|+|.+|++.|..++|+ +|+.++.|+|..|-+|-|||.||++.||.+||
T Consensus 175 vV~fLL~~GAdp~~lgk--------~resALsLAt~ggytdiV~----lLL~r~vdVNvyDwNGgTpLlyAvrgnhvkcv 242 (296)
T KOG0502|consen 175 VVQFLLNSGADPDALGK--------YRESALSLATRGGYTDIVE----LLLTREVDVNVYDWNGGTPLLYAVRGNHVKCV 242 (296)
T ss_pred HHHHHHHcCCChhhhhh--------hhhhhHhHHhcCChHHHHH----HHHhcCCCcceeccCCCceeeeeecCChHHHH
Confidence 48999999998776532 3357899999999999999 99999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCCCCCCccccccccccccccchhhhhccccccccccCCCCCCc
Q 001480 81 RRLLAAGADPDARDGESGWSSLHRALHFGHLAVASVLLQSGASITLEDCKSRTPV 135 (1071)
Q Consensus 81 k~LL~~GAd~n~~d~~~G~TpL~~A~~~g~~~vv~lLl~~Ga~v~l~d~~G~tpL 135 (1071)
+.||..||+++..+ ..|.+++++|...|.. +++..++..+...++++.-++|+
T Consensus 243 e~Ll~sGAd~t~e~-dsGy~~mdlAValGyr-~Vqqvie~h~lkl~Q~~~~~~~~ 295 (296)
T KOG0502|consen 243 ESLLNSGADVTQED-DSGYWIMDLAVALGYR-IVQQVIEKHALKLCQDSEKRTPL 295 (296)
T ss_pred HHHHhcCCCccccc-ccCCcHHHHHHHhhhH-HHHHHHHHHHHHHhhcccCCCCC
Confidence 99999999999999 8999999999999987 88888888888888888777775
No 69
>KOG4214 consensus Myotrophin and similar proteins [Transcription]
Probab=99.24 E-value=5.1e-12 Score=114.84 Aligned_cols=103 Identities=28% Similarity=0.388 Sum_probs=89.5
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCcccccccccc
Q 001480 29 KDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRALHF 108 (1071)
Q Consensus 29 TpLh~Aa~~G~~~~v~~lL~lLl~~GadiN~~d~~G~TpLH~Aa~~g~~eivk~LL~~GAd~n~~d~~~G~TpL~~A~~~ 108 (1071)
..+.++..+|.++.|+. ....|.|+|..- .|+||||||+-+|.++++++|+..||+++.+| .+|.|||-.|...
T Consensus 4 ~~~~W~vkNG~~DeVk~----~v~~g~nVn~~~-ggR~plhyAAD~GQl~ilefli~iGA~i~~kD-KygITPLLsAvwE 77 (117)
T KOG4214|consen 4 MSVAWNVKNGEIDEVKQ----SVNEGLNVNEIY-GGRTPLHYAADYGQLSILEFLISIGANIQDKD-KYGITPLLSAVWE 77 (117)
T ss_pred hhHhhhhccCcHHHHHH----HHHccccHHHHh-CCcccchHhhhcchHHHHHHHHHhccccCCcc-ccCCcHHHHHHHH
Confidence 34788999999999984 445678888764 88999999999999999999999999999999 8999999999999
Q ss_pred ccccchhhhhccccccccccCCCCCCccc
Q 001480 109 GHLAVASVLLQSGASITLEDCKSRTPVDL 137 (1071)
Q Consensus 109 g~~~vv~lLl~~Ga~v~l~d~~G~tpLdl 137 (1071)
||.+|+++|++.|++-..+..+|.+.++.
T Consensus 78 GH~~cVklLL~~GAdrt~~~PdG~~~~ea 106 (117)
T KOG4214|consen 78 GHRDCVKLLLQNGADRTIHAPDGTALIEA 106 (117)
T ss_pred hhHHHHHHHHHcCcccceeCCCchhHHhh
Confidence 99999999999999988887777765543
No 70
>PHA02792 ankyrin-like protein; Provisional
Probab=99.19 E-value=2.6e-11 Score=146.25 Aligned_cols=117 Identities=18% Similarity=0.101 Sum_probs=96.2
Q ss_pred CHHHHHhCCCCccccCCccccCCCCCCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHH
Q 001480 1 MTELLVSHHGQKQTLQSPARKSSLGGVQKDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIV 80 (1071)
Q Consensus 1 Ive~LL~~ga~~~~~~~~~~~~~~~~g~TpLh~Aa~~G~~~~v~~lL~lLl~~GadiN~~d~~G~TpLH~Aa~~g~~eiv 80 (1071)
++++|+++|++.+.... .+.+.||||+|+.....+ +..++++|+++|+|+|.+|..|.||||+|+..++.+++
T Consensus 354 IVelLIs~GADIN~kD~------~g~~~TpLh~A~~n~~~~-v~~IlklLIs~GADIN~kD~~G~TPLh~Aa~~~n~eiv 426 (631)
T PHA02792 354 VVEYILKNGNVVVEDDD------NIINIMPLFPTLSIHESD-VLSILKLCKPYIDDINKIDKHGRSILYYCIESHSVSLV 426 (631)
T ss_pred HHHHHHHcCCchhhhcC------CCCChhHHHHHHHhccHh-HHHHHHHHHhcCCccccccccCcchHHHHHHcCCHHHH
Confidence 58999999998654321 123569999987766654 33467799999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCCCCCCccccccccc----------cccccchhhhhccccccc
Q 001480 81 RRLLAAGADPDARDGESGWSSLHRALH----------FGHLAVASVLLQSGASIT 125 (1071)
Q Consensus 81 k~LL~~GAd~n~~d~~~G~TpL~~A~~----------~g~~~vv~lLl~~Ga~v~ 125 (1071)
++|+++|++++.+| ..|+||||+|+. ....+++++|++++.+++
T Consensus 427 elLLs~GADIN~kD-~~G~TpL~~A~~~~~~~~~~i~~~~~~il~lLLs~~p~i~ 480 (631)
T PHA02792 427 EWLIDNGADINITT-KYGSTCIGICVILAHACIPEIAELYIKILEIILSKLPTIE 480 (631)
T ss_pred HHHHHCCCCCCCcC-CCCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCCChh
Confidence 99999999999999 889999999975 223567888998887664
No 71
>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]
Probab=99.18 E-value=1.2e-11 Score=146.65 Aligned_cols=112 Identities=28% Similarity=0.268 Sum_probs=106.7
Q ss_pred CCCCCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCcccc
Q 001480 23 SLGGVQKDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSL 102 (1071)
Q Consensus 23 ~~~~g~TpLh~Aa~~G~~~~v~~lL~lLl~~GadiN~~d~~G~TpLH~Aa~~g~~eivk~LL~~GAd~n~~d~~~G~TpL 102 (1071)
.+..|.|.||+||.+|+.++++ +|+++.+-++.+|..|.+|||+|+|.|+.+++++||.++..+|..+ ..|.|||
T Consensus 45 qd~~gfTalhha~Lng~~~is~----llle~ea~ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~-~e~~tpl 119 (854)
T KOG0507|consen 45 QDYSGFTLLHHAVLNGQNQISK----LLLDYEALLDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDILNAVN-IENETPL 119 (854)
T ss_pred cCccchhHHHHHHhcCchHHHH----HHhcchhhhhhhhccCcceEEehhhcCcchHHHHHHhcccCCCccc-ccCcCcc
Confidence 3457899999999999999988 8999999999999999999999999999999999999999999999 8899999
Q ss_pred ccccccccccchhhhhccccccccccCCCCCCcccCC
Q 001480 103 HRALHFGHLAVASVLLQSGASITLEDCKSRTPVDLLS 139 (1071)
Q Consensus 103 ~~A~~~g~~~vv~lLl~~Ga~v~l~d~~G~tpLdl~s 139 (1071)
|.|+.+||.+++.+|+.+|+++.++++.+.+++||.+
T Consensus 120 hlaaqhgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~ 156 (854)
T KOG0507|consen 120 HLAAQHGHLEVVFYLLKKNADPFIRNNSKETVLDLAS 156 (854)
T ss_pred chhhhhcchHHHHHHHhcCCCccccCcccccHHHHHH
Confidence 9999999999999999999999999999999999976
No 72
>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.
Probab=99.18 E-value=4.3e-11 Score=113.85 Aligned_cols=109 Identities=39% Similarity=0.563 Sum_probs=101.8
Q ss_pred CCCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCcccccc
Q 001480 25 GGVQKDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHR 104 (1071)
Q Consensus 25 ~~g~TpLh~Aa~~G~~~~v~~lL~lLl~~GadiN~~d~~G~TpLH~Aa~~g~~eivk~LL~~GAd~n~~d~~~G~TpL~~ 104 (1071)
..|.||||+|+..++.++++ +|++.+.+++.++..|.||||+|+..++.+++++|+..|++++..+ ..|.||+|+
T Consensus 5 ~~g~t~l~~a~~~~~~~~i~----~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~-~~~~~~l~~ 79 (126)
T cd00204 5 EDGRTPLHLAASNGHLEVVK----LLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARD-KDGNTPLHL 79 (126)
T ss_pred cCCCCHHHHHHHcCcHHHHH----HHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccC-CCCCCHHHH
Confidence 46789999999999998888 8889999999999999999999999999999999999999999998 889999999
Q ss_pred ccccccccchhhhhccccccccccCCCCCCcccC
Q 001480 105 ALHFGHLAVASVLLQSGASITLEDCKSRTPVDLL 138 (1071)
Q Consensus 105 A~~~g~~~vv~lLl~~Ga~v~l~d~~G~tpLdl~ 138 (1071)
|+..++.+++++|+..+.+.+..+..+.+|+++.
T Consensus 80 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~ 113 (126)
T cd00204 80 AARNGNLDVVKLLLKHGADVNARDKDGRTPLHLA 113 (126)
T ss_pred HHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHH
Confidence 9999999999999999998988999999988764
No 73
>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]
Probab=99.17 E-value=2.3e-11 Score=130.02 Aligned_cols=113 Identities=24% Similarity=0.295 Sum_probs=91.5
Q ss_pred CHHHHHhCCCCccccCCccccCCCCCCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHH
Q 001480 1 MTELLVSHHGQKQTLQSPARKSSLGGVQKDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIV 80 (1071)
Q Consensus 1 Ive~LL~~ga~~~~~~~~~~~~~~~~g~TpLh~Aa~~G~~~~v~~lL~lLl~~GadiN~~d~~G~TpLH~Aa~~g~~eiv 80 (1071)
|+|.||..|+.++.. + ....||||+||.+|+.++|+ .|++..+|+|+.+..|.|||||||..|.-.++
T Consensus 49 ivemll~rgarvn~t-n-------mgddtplhlaaahghrdivq----kll~~kadvnavnehgntplhyacfwgydqia 116 (448)
T KOG0195|consen 49 IVEMLLSRGARVNST-N-------MGDDTPLHLAAAHGHRDIVQ----KLLSRKADVNAVNEHGNTPLHYACFWGYDQIA 116 (448)
T ss_pred HHHHHHhcccccccc-c-------CCCCcchhhhhhcccHHHHH----HHHHHhcccchhhccCCCchhhhhhhcHHHHH
Confidence 578999987775532 2 23468899999999999999 78889999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCCCCCCccccccccccccccchhhhhcccccccc
Q 001480 81 RRLLAAGADPDARDGESGWSSLHRALHFGHLAVASVLLQSGASITL 126 (1071)
Q Consensus 81 k~LL~~GAd~n~~d~~~G~TpL~~A~~~g~~~vv~lLl~~Ga~v~l 126 (1071)
+-|+..||.+++.+ .+|.|||+.|.-.-...+.++--++|.+++.
T Consensus 117 edli~~ga~v~icn-k~g~tpldkakp~l~~~l~e~aek~gq~~nr 161 (448)
T KOG0195|consen 117 EDLISCGAAVNICN-KKGMTPLDKAKPMLKNTLLEIAEKHGQSPNR 161 (448)
T ss_pred HHHHhccceeeecc-cCCCCchhhhchHHHHHHHHHHHHhCCCCCc
Confidence 99999999999999 8999999998543333333333345666553
No 74
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=99.17 E-value=4e-11 Score=149.01 Aligned_cols=106 Identities=31% Similarity=0.410 Sum_probs=97.1
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCcccccccccc
Q 001480 29 KDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRALHF 108 (1071)
Q Consensus 29 TpLh~Aa~~G~~~~v~~lL~lLl~~GadiN~~d~~G~TpLH~Aa~~g~~eivk~LL~~GAd~n~~d~~~G~TpL~~A~~~ 108 (1071)
+.||.||..|+.+.++ +|+++|+++|.+|..|+||||+||..|+.+++++||++|++++.+| ..|+||||+|+..
T Consensus 84 ~~L~~aa~~G~~~~vk----~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d-~~G~TpLh~A~~~ 158 (664)
T PTZ00322 84 VELCQLAASGDAVGAR----ILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLD-KDGKTPLELAEEN 158 (664)
T ss_pred HHHHHHHHcCCHHHHH----HHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCC-CCCCCHHHHHHHC
Confidence 4689999999999988 8889999999999999999999999999999999999999999999 8899999999999
Q ss_pred ccccchhhhhcc-------ccccccccCCCCCCcccCC
Q 001480 109 GHLAVASVLLQS-------GASITLEDCKSRTPVDLLS 139 (1071)
Q Consensus 109 g~~~vv~lLl~~-------Ga~v~l~d~~G~tpLdl~s 139 (1071)
++.+++++|+.+ |++.+..+..|.++....+
T Consensus 159 g~~~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~~ 196 (664)
T PTZ00322 159 GFREVVQLLSRHSQCHFELGANAKPDSFTGKPPSLEDS 196 (664)
T ss_pred CcHHHHHHHHhCCCcccccCCCCCccccCCCCccchhh
Confidence 999999999998 7888777777777665443
No 75
>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A.
Probab=99.16 E-value=1.5e-11 Score=104.04 Aligned_cols=55 Identities=42% Similarity=0.697 Sum_probs=33.3
Q ss_pred HHhCC-CCCcccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCccccccc
Q 001480 50 LKKNG-GNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRA 105 (1071)
Q Consensus 50 Ll~~G-adiN~~d~~G~TpLH~Aa~~g~~eivk~LL~~GAd~n~~d~~~G~TpL~~A 105 (1071)
|+++| +++|.+|..|.||||+||++|+.+++++||+.|+|++.+| ..|+||||+|
T Consensus 1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d-~~G~Tpl~~A 56 (56)
T PF13857_consen 1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKD-KDGQTPLHYA 56 (56)
T ss_dssp -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT----TTS--HHHH-
T ss_pred CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCc-CCCCCHHHhC
Confidence 45677 9999999999999999999999999999999999999999 8999999987
No 76
>PHA02730 ankyrin-like protein; Provisional
Probab=99.14 E-value=5.9e-11 Score=144.48 Aligned_cols=119 Identities=14% Similarity=0.125 Sum_probs=95.1
Q ss_pred CHHHHHhCCCC-ccccCCccccCCCCCCchHHHH---HHHcCC----HHH-HHHHHHHHHhCCCCCcccCCCCCcHHHHH
Q 001480 1 MTELLVSHHGQ-KQTLQSPARKSSLGGVQKDLCL---AVREGS----LAD-VESALALLKKNGGNINSRNIFGLTPLHSA 71 (1071)
Q Consensus 1 Ive~LL~~ga~-~~~~~~~~~~~~~~~g~TpLh~---Aa~~G~----~~~-v~~lL~lLl~~GadiN~~d~~G~TpLH~A 71 (1071)
|+++||++|+. +.+.. +..|.||||. |...+. .+. ...++++|+.+|+|+|.+|..|.||||+|
T Consensus 397 IvelLIs~Ga~~dIN~k-------d~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~GADINakD~~G~TPLh~A 469 (672)
T PHA02730 397 VVRFIVENNGHMAINHV-------SNNGRLCMYGLILSRFNNCGYHCYETILIDVFDILSKYMDDIDMIDNENKTLLYYA 469 (672)
T ss_pred HHHHHHHcCCCcccccc-------ccCCCchHhHHHHHHhccccccccchhHHHHHHHHHhcccchhccCCCCCCHHHHH
Confidence 58999999984 33322 3457899984 333321 122 12345599999999999999999999999
Q ss_pred HhcCCHHHHHHHHhcCCCCCCCCCCCCcccccccccc--ccccchhhhhcccccccc
Q 001480 72 IWRNQVPIVRRLLAAGADPDARDGESGWSSLHRALHF--GHLAVASVLLQSGASITL 126 (1071)
Q Consensus 72 a~~g~~eivk~LL~~GAd~n~~d~~~G~TpL~~A~~~--g~~~vv~lLl~~Ga~v~l 126 (1071)
+..++.+++++|+++||+++.+|...|.||||+|+.. ++.+++++|+++|+....
T Consensus 470 a~~~~~eive~LI~~GAdIN~~d~~~g~TaL~~Aa~~~~~~~eIv~~LLs~ga~i~~ 526 (672)
T PHA02730 470 VDVNNIQFARRLLEYGASVNTTSRSIINTAIQKSSYRRENKTKLVDLLLSYHPTLET 526 (672)
T ss_pred HHhCCHHHHHHHHHCCCCCCCCCCcCCcCHHHHHHHhhcCcHHHHHHHHHcCCCHHH
Confidence 9999999999999999999999933599999999874 789999999999988753
No 77
>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.13 E-value=4.6e-11 Score=137.86 Aligned_cols=124 Identities=30% Similarity=0.354 Sum_probs=108.6
Q ss_pred HHHHHhCCCCccccCCccccCCCCCCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHH
Q 001480 2 TELLVSHHGQKQTLQSPARKSSLGGVQKDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVR 81 (1071)
Q Consensus 2 ve~LL~~ga~~~~~~~~~~~~~~~~g~TpLh~Aa~~G~~~~v~~lL~lLl~~GadiN~~d~~G~TpLH~Aa~~g~~eivk 81 (1071)
++.||..|+.+ ...+.+|.|+||-+|...+.++|+ +|+++|++||..|..||||||.|+..|+..+++
T Consensus 56 v~~ll~~ga~~--------~~~n~DglTalhq~~id~~~e~v~----~l~e~ga~Vn~~d~e~wtPlhaaascg~~~i~~ 123 (527)
T KOG0505|consen 56 VRKLLNRGASP--------NLCNVDGLTALHQACIDDNLEMVK----FLVENGANVNAQDNEGWTPLHAAASCGYLNIVE 123 (527)
T ss_pred HHHHhccCCCc--------cccCCccchhHHHHHhcccHHHHH----HHHHhcCCccccccccCCcchhhcccccHHHHH
Confidence 45677656543 233558999999999999999999 999999999999999999999999999999999
Q ss_pred HHHhcCCCCCCCC----------------------------------------------------------CCCCccccc
Q 001480 82 RLLAAGADPDARD----------------------------------------------------------GESGWSSLH 103 (1071)
Q Consensus 82 ~LL~~GAd~n~~d----------------------------------------------------------~~~G~TpL~ 103 (1071)
+|+.+||++...| ...|.|+||
T Consensus 124 ~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lH 203 (527)
T KOG0505|consen 124 YLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALH 203 (527)
T ss_pred HHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHH
Confidence 9999988754443 125899999
Q ss_pred cccccccccchhhhhccccccccccCCCCCCccc
Q 001480 104 RALHFGHLAVASVLLQSGASITLEDCKSRTPVDL 137 (1071)
Q Consensus 104 ~A~~~g~~~vv~lLl~~Ga~v~l~d~~G~tpLdl 137 (1071)
.|+..|..++..+|+.+|.+++.+|.+|++|++.
T Consensus 204 vAaa~Gy~e~~~lLl~ag~~~~~~D~dgWtPlHA 237 (527)
T KOG0505|consen 204 VAAANGYTEVAALLLQAGYSVNIKDYDGWTPLHA 237 (527)
T ss_pred HHHhhhHHHHHHHHHHhccCcccccccCCCcccH
Confidence 9999999999999999999999999999999976
No 78
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=99.09 E-value=8.2e-11 Score=148.61 Aligned_cols=111 Identities=23% Similarity=0.219 Sum_probs=95.2
Q ss_pred CCCCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccC--------------CCCCcHHHHHHhcCCHHHHHHHHhcCCC
Q 001480 24 LGGVQKDLCLAVREGSLADVESALALLKKNGGNINSRN--------------IFGLTPLHSAIWRNQVPIVRRLLAAGAD 89 (1071)
Q Consensus 24 ~~~g~TpLh~Aa~~G~~~~v~~lL~lLl~~GadiN~~d--------------~~G~TpLH~Aa~~g~~eivk~LL~~GAd 89 (1071)
...|.||||+||.+|+.++++ +|+++|+|+|.++ .+|.||||+|+..|+.+++++|+++|+|
T Consensus 125 ~~~G~TpLhlAa~~~~~eiVk----lLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gad 200 (743)
T TIGR00870 125 FTPGITALHLAAHRQNYEIVK----LLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPAD 200 (743)
T ss_pred cCCCCcHHHHHHHhCCHHHHH----HHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcc
Confidence 346899999999999999999 8999999999763 3589999999999999999999999999
Q ss_pred CCCCCCCCCccccccccccc---------cccchhhhhcccccc-------ccccCCCCCCcccCC
Q 001480 90 PDARDGESGWSSLHRALHFG---------HLAVASVLLQSGASI-------TLEDCKSRTPVDLLS 139 (1071)
Q Consensus 90 ~n~~d~~~G~TpL~~A~~~g---------~~~vv~lLl~~Ga~v-------~l~d~~G~tpLdl~s 139 (1071)
++.+| ..|+||||+|+..+ ...|.++++..++.. +..|..|.||++++.
T Consensus 201 in~~d-~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~ 265 (743)
T TIGR00870 201 ILTAD-SLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAA 265 (743)
T ss_pred hhhHh-hhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhh
Confidence 99999 88999999999886 344666776665543 667889999998754
No 79
>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]
Probab=99.08 E-value=2.8e-10 Score=119.19 Aligned_cols=112 Identities=29% Similarity=0.363 Sum_probs=102.9
Q ss_pred CCCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCC-----HHHHHHHHhcCC---CCCCCCCC
Q 001480 25 GGVQKDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQ-----VPIVRRLLAAGA---DPDARDGE 96 (1071)
Q Consensus 25 ~~g~TpLh~Aa~~G~~~~v~~lL~lLl~~GadiN~~d~~G~TpLH~Aa~~g~-----~eivk~LL~~GA---d~n~~d~~ 96 (1071)
..+.+++|.++..++...+. +|+..|++++.+|..|.||||+|+..++ .+++++||+.|+ +.+.+| .
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~-~ 145 (235)
T COG0666 71 LDGRLPLHSAASKGDDKIVK----LLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRD-E 145 (235)
T ss_pred ccccCHHHHHHHcCcHHHHH----HHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccC-C
Confidence 34678999999999999887 8889999999999999999999999999 999999999999 555557 8
Q ss_pred CCccccccccccccccchhhhhccccccccccCCCCCCcccCCCC
Q 001480 97 SGWSSLHRALHFGHLAVASVLLQSGASITLEDCKSRTPVDLLSGP 141 (1071)
Q Consensus 97 ~G~TpL~~A~~~g~~~vv~lLl~~Ga~v~l~d~~G~tpLdl~sg~ 141 (1071)
.|+||||+|+..|+.+++.+|+..|++++..+..|.++++.....
T Consensus 146 ~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~ 190 (235)
T COG0666 146 DGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKN 190 (235)
T ss_pred CCCchhHHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhccc
Confidence 999999999999999999999999999999999999999886654
No 80
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=99.07 E-value=1.1e-10 Score=147.41 Aligned_cols=114 Identities=28% Similarity=0.233 Sum_probs=89.3
Q ss_pred CCCchHHHHHHHcCCHHHHHHHHHHHHhCCCC------Ccc----cCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCC
Q 001480 25 GGVQKDLCLAVREGSLADVESALALLKKNGGN------INS----RNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARD 94 (1071)
Q Consensus 25 ~~g~TpLh~Aa~~G~~~~v~~lL~lLl~~Gad------iN~----~d~~G~TpLH~Aa~~g~~eivk~LL~~GAd~n~~d 94 (1071)
..|.||||.|+. +..+.++.++.++...+.+ ++. .+..|.||||+||..|+.++|++||++||+++.++
T Consensus 80 ~~G~T~Lh~A~~-~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~ 158 (743)
T TIGR00870 80 AVGDTLLHAISL-EYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARA 158 (743)
T ss_pred CcChHHHHHHHh-ccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCc
Confidence 346677777765 3345555555555554432 111 23469999999999999999999999999999764
Q ss_pred C-------------CCCccccccccccccccchhhhhccccccccccCCCCCCcccCC
Q 001480 95 G-------------ESGWSSLHRALHFGHLAVASVLLQSGASITLEDCKSRTPVDLLS 139 (1071)
Q Consensus 95 ~-------------~~G~TpL~~A~~~g~~~vv~lLl~~Ga~v~l~d~~G~tpLdl~s 139 (1071)
. ..|+||||+|+..++.+++++|+++|++++..|..|+||++++.
T Consensus 159 ~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~d~~g~T~Lh~A~ 216 (743)
T TIGR00870 159 CGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADILTADSLGNTLLHLLV 216 (743)
T ss_pred CCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcchhhHhhhhhHHHHHHH
Confidence 1 25899999999999999999999999999999999999998743
No 81
>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A ....
Probab=99.06 E-value=2.8e-10 Score=95.31 Aligned_cols=54 Identities=39% Similarity=0.505 Sum_probs=42.3
Q ss_pred CchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHH
Q 001480 27 VQKDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLL 84 (1071)
Q Consensus 27 g~TpLh~Aa~~G~~~~v~~lL~lLl~~GadiN~~d~~G~TpLH~Aa~~g~~eivk~LL 84 (1071)
|.||||+||+.|+.++++ +|+++|+|+|.+|..|+||||+||..|+.+++++||
T Consensus 1 g~t~lh~A~~~g~~~~~~----~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll 54 (54)
T PF13637_consen 1 GRTPLHWAARSGNLEIVK----LLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL 54 (54)
T ss_dssp SSBHHHHHHHTT-HHHHH----HHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred CChHHHHHHHhCCHHHHH----HHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence 568899999999988888 777889999999999999999999999999999886
No 82
>KOG4214 consensus Myotrophin and similar proteins [Transcription]
Probab=99.05 E-value=2e-10 Score=104.69 Aligned_cols=75 Identities=32% Similarity=0.516 Sum_probs=69.2
Q ss_pred CCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCccccccc
Q 001480 26 GVQKDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRA 105 (1071)
Q Consensus 26 ~g~TpLh~Aa~~G~~~~v~~lL~lLl~~GadiN~~d~~G~TpLH~Aa~~g~~eivk~LL~~GAd~n~~d~~~G~TpL~~A 105 (1071)
.|.+||||||-+|.+++++ +|+..|++|+.+|.+|.|||..|++.||.+||++||+.||+-..+. .+|.+.+..+
T Consensus 33 ggR~plhyAAD~GQl~ile----fli~iGA~i~~kDKygITPLLsAvwEGH~~cVklLL~~GAdrt~~~-PdG~~~~eat 107 (117)
T KOG4214|consen 33 GGRTPLHYAADYGQLSILE----FLISIGANIQDKDKYGITPLLSAVWEGHRDCVKLLLQNGADRTIHA-PDGTALIEAT 107 (117)
T ss_pred CCcccchHhhhcchHHHHH----HHHHhccccCCccccCCcHHHHHHHHhhHHHHHHHHHcCcccceeC-CCchhHHhhc
Confidence 5789999999999999888 9999999999999999999999999999999999999999999888 7787776654
No 83
>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]
Probab=99.01 E-value=8.5e-10 Score=115.50 Aligned_cols=107 Identities=32% Similarity=0.430 Sum_probs=95.1
Q ss_pred HHHHHhCCCCccccCCccccCCCCCCchHHHHHHHcCC-----HHHHHHHHHHHHhCCC---CCcccCCCCCcHHHHHHh
Q 001480 2 TELLVSHHGQKQTLQSPARKSSLGGVQKDLCLAVREGS-----LADVESALALLKKNGG---NINSRNIFGLTPLHSAIW 73 (1071)
Q Consensus 2 ve~LL~~ga~~~~~~~~~~~~~~~~g~TpLh~Aa~~G~-----~~~v~~lL~lLl~~Ga---diN~~d~~G~TpLH~Aa~ 73 (1071)
+++|+..+.+. +.. +..|.||||+|+..++ .++++ +|++.|+ +.+.+|..|.||||+|+.
T Consensus 89 ~~~l~~~~~~~-~~~-------~~~g~t~l~~a~~~~~~~~~~~~~~~----~ll~~g~~~~~~~~~~~~g~tpl~~A~~ 156 (235)
T COG0666 89 VKLLLASGADV-NAK-------DADGDTPLHLAALNGNPPEGNIEVAK----LLLEAGADLDVNNLRDEDGNTPLHWAAL 156 (235)
T ss_pred HHHHHHcCCCc-ccc-------cCCCCcHHHHHHhcCCcccchHHHHH----HHHHcCCCCCCccccCCCCCchhHHHHH
Confidence 35777777775 322 4578899999999999 89999 8889999 666679999999999999
Q ss_pred cCCHHHHHHHHhcCCCCCCCCCCCCccccccccccccccchhhhhccc
Q 001480 74 RNQVPIVRRLLAAGADPDARDGESGWSSLHRALHFGHLAVASVLLQSG 121 (1071)
Q Consensus 74 ~g~~eivk~LL~~GAd~n~~d~~~G~TpL~~A~~~g~~~vv~lLl~~G 121 (1071)
.|+.+++++|++.|++++.++ ..|.|++++|+..++..++..|+..+
T Consensus 157 ~~~~~~~~~ll~~~~~~~~~~-~~g~t~l~~a~~~~~~~~~~~l~~~~ 203 (235)
T COG0666 157 NGDADIVELLLEAGADPNSRN-SYGVTALDPAAKNGRIELVKLLLDKG 203 (235)
T ss_pred cCchHHHHHHHhcCCCCcccc-cCCCcchhhhcccchHHHHHHHHhcC
Confidence 999999999999999999998 88999999999999999999999876
No 84
>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]
Probab=98.99 E-value=3.9e-10 Score=128.66 Aligned_cols=104 Identities=29% Similarity=0.373 Sum_probs=88.7
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCcccccccccc
Q 001480 29 KDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRALHF 108 (1071)
Q Consensus 29 TpLh~Aa~~G~~~~v~~lL~lLl~~GadiN~~d~~G~TpLH~Aa~~g~~eivk~LL~~GAd~n~~d~~~G~TpL~~A~~~ 108 (1071)
-.|.-|+..|.++.|+.++ ..--|+...++.|.||||-|++.||++||++||++|+|+|..| .+||||||+|+..
T Consensus 552 aLLLDaaLeGEldlVq~~i----~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~D-SdGWTPLHCAASC 626 (752)
T KOG0515|consen 552 ALLLDAALEGELDLVQRII----YEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAAD-SDGWTPLHCAASC 626 (752)
T ss_pred HHHHhhhhcchHHHHHHHH----HhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCcc-CCCCchhhhhhhc
Confidence 3467789999999999544 4556888889999999999999999999999999999999999 8999999999999
Q ss_pred ccccchhhhhccccccccccC-CCCCCccc
Q 001480 109 GHLAVASVLLQSGASITLEDC-KSRTPVDL 137 (1071)
Q Consensus 109 g~~~vv~lLl~~Ga~v~l~d~-~G~tpLdl 137 (1071)
++..+++.|++.|+-+..... ++.|+.|-
T Consensus 627 Nnv~~ckqLVe~GaavfAsTlSDmeTa~eK 656 (752)
T KOG0515|consen 627 NNVPMCKQLVESGAAVFASTLSDMETAAEK 656 (752)
T ss_pred CchHHHHHHHhccceEEeeecccccchhhh
Confidence 999999999999987754333 44555543
No 85
>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A ....
Probab=98.97 E-value=2.7e-10 Score=95.42 Aligned_cols=54 Identities=43% Similarity=0.618 Sum_probs=46.4
Q ss_pred CCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCccccccccccccccchhhhh
Q 001480 64 GLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRALHFGHLAVASVLL 118 (1071)
Q Consensus 64 G~TpLH~Aa~~g~~eivk~LL~~GAd~n~~d~~~G~TpL~~A~~~g~~~vv~lLl 118 (1071)
|+||||+||..|+.+++++|+++|++++.+| .+|+||||+|+..|+.+++++|+
T Consensus 1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d-~~g~t~lh~A~~~g~~~~~~~Ll 54 (54)
T PF13637_consen 1 GRTPLHWAARSGNLEIVKLLLEHGADINAQD-EDGRTPLHYAAKNGNIDIVKFLL 54 (54)
T ss_dssp SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B--TTS--HHHHHHHTT-HHHHHHHH
T ss_pred CChHHHHHHHhCCHHHHHHHHHCCCCCCCCC-CCCCCHHHHHHHccCHHHHHHHC
Confidence 7899999999999999999999999999999 88999999999999999999986
No 86
>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]
Probab=98.97 E-value=4.3e-10 Score=128.28 Aligned_cols=95 Identities=24% Similarity=0.244 Sum_probs=85.6
Q ss_pred CCCCCCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCccc
Q 001480 22 SSLGGVQKDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSS 101 (1071)
Q Consensus 22 ~~~~~g~TpLh~Aa~~G~~~~v~~lL~lLl~~GadiN~~d~~G~TpLH~Aa~~g~~eivk~LL~~GAd~n~~d~~~G~Tp 101 (1071)
.++.+|.|+||-|++.||+++|+ +|++.|+|||..|.+||||||+||..+++.+|+.|++.|+-+-+....++.||
T Consensus 578 qpNdEGITaLHNAiCaghyeIVk----FLi~~ganVNa~DSdGWTPLHCAASCNnv~~ckqLVe~GaavfAsTlSDmeTa 653 (752)
T KOG0515|consen 578 QPNDEGITALHNAICAGHYEIVK----FLIEFGANVNAADSDGWTPLHCAASCNNVPMCKQLVESGAAVFASTLSDMETA 653 (752)
T ss_pred CCCccchhHHhhhhhcchhHHHH----HHHhcCCcccCccCCCCchhhhhhhcCchHHHHHHHhccceEEeeecccccch
Confidence 45678999999999999999999 99999999999999999999999999999999999999999888776778999
Q ss_pred cccc--cccccccchhhhhcc
Q 001480 102 LHRA--LHFGHLAVASVLLQS 120 (1071)
Q Consensus 102 L~~A--~~~g~~~vv~lLl~~ 120 (1071)
...+ ...|..+|..+|...
T Consensus 654 ~eKCee~eeGY~~CsqyL~~v 674 (752)
T KOG0515|consen 654 AEKCEEMEEGYDQCSQYLYGV 674 (752)
T ss_pred hhhcchhhhhHHHHHHHHHHH
Confidence 8876 356778899888753
No 87
>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.
Probab=98.95 E-value=2.4e-09 Score=101.78 Aligned_cols=105 Identities=36% Similarity=0.530 Sum_probs=92.4
Q ss_pred CHHHHHhCCCCccccCCccccCCCCCCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHH
Q 001480 1 MTELLVSHHGQKQTLQSPARKSSLGGVQKDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIV 80 (1071)
Q Consensus 1 Ive~LL~~ga~~~~~~~~~~~~~~~~g~TpLh~Aa~~G~~~~v~~lL~lLl~~GadiN~~d~~G~TpLH~Aa~~g~~eiv 80 (1071)
++++|++++.... .....|.||||+|+..++.++++ +|++.+++++..+..|.||+|+|+..++.+++
T Consensus 22 ~i~~li~~~~~~~--------~~~~~g~~~l~~a~~~~~~~~~~----~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~ 89 (126)
T cd00204 22 VVKLLLENGADVN--------AKDNDGRTPLHLAAKNGHLEIVK----LLLEKGADVNARDKDGNTPLHLAARNGNLDVV 89 (126)
T ss_pred HHHHHHHcCCCCC--------ccCCCCCcHHHHHHHcCCHHHHH----HHHHcCCCccccCCCCCCHHHHHHHcCcHHHH
Confidence 4688998777642 11346779999999999998888 88899999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCCCCCCccccccccccccccchhhhh
Q 001480 81 RRLLAAGADPDARDGESGWSSLHRALHFGHLAVASVLL 118 (1071)
Q Consensus 81 k~LL~~GAd~n~~d~~~G~TpL~~A~~~g~~~vv~lLl 118 (1071)
++|+..+.+++..+ ..|.||+++|...++.+++++|+
T Consensus 90 ~~L~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~Ll 126 (126)
T cd00204 90 KLLLKHGADVNARD-KDGRTPLHLAAKNGHLEVVKLLL 126 (126)
T ss_pred HHHHHcCCCCcccC-CCCCCHHHHHHhcCCHHHHHHhC
Confidence 99999999999999 88999999999999999988874
No 88
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]
Probab=98.94 E-value=8.7e-10 Score=118.33 Aligned_cols=92 Identities=26% Similarity=0.256 Sum_probs=75.2
Q ss_pred CCCCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCccc-CCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCcccc
Q 001480 24 LGGVQKDLCLAVREGSLADVESALALLKKNGGNINSR-NIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSL 102 (1071)
Q Consensus 24 ~~~g~TpLh~Aa~~G~~~~v~~lL~lLl~~GadiN~~-d~~G~TpLH~Aa~~g~~eivk~LL~~GAd~n~~d~~~G~TpL 102 (1071)
+..|.|+|..|+..|+++.++ +|++.|+|||.. +..++||||+|+..|+.+++++||++|+.+...| .-|+|+-
T Consensus 42 D~sGMs~LahAaykGnl~~v~----lll~~gaDvN~~qhg~~YTpLmFAALSGn~dvcrllldaGa~~~~vN-svgrTAa 116 (396)
T KOG1710|consen 42 DPSGMSVLAHAAYKGNLTLVE----LLLELGADVNDKQHGTLYTPLMFAALSGNQDVCRLLLDAGARMYLVN-SVGRTAA 116 (396)
T ss_pred CCCcccHHHHHHhcCcHHHHH----HHHHhCCCcCcccccccccHHHHHHHcCCchHHHHHHhccCcccccc-chhhhHH
Confidence 346778888888888888888 788888888864 5678888888888888888888888888888888 6688888
Q ss_pred ccccccccccchhhhhcc
Q 001480 103 HRALHFGHLAVASVLLQS 120 (1071)
Q Consensus 103 ~~A~~~g~~~vv~lLl~~ 120 (1071)
++|+.-||.+|+.++-++
T Consensus 117 qmAAFVG~H~CV~iINN~ 134 (396)
T KOG1710|consen 117 QMAAFVGHHECVAIINNH 134 (396)
T ss_pred HHHHHhcchHHHHHHhcc
Confidence 888888888888776554
No 89
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.87 E-value=3e-09 Score=123.19 Aligned_cols=53 Identities=38% Similarity=0.551 Sum_probs=51.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHhhhHHHHHHHHHHcCC
Q 001480 695 QEISKQVRALRKKLQQIEMLEVKLSNGHILDEQQIAKLQTKSVLERSLAELGV 747 (1071)
Q Consensus 695 ~~~~k~~r~l~kkl~~ie~l~~k~~~g~~l~~~q~~k~~~~~~~~~~l~~l~~ 747 (1071)
.+.+||||+|.||||+||+||++++.||.|++.||+||++|.++.+||+.||+
T Consensus 514 ~~~ekKir~L~kkLraIe~LK~r~a~Ge~Le~nQl~kIq~E~~~l~ELk~L~~ 566 (566)
T KOG2315|consen 514 SEEEKKIRSLLKKLRAIEALKERMANGEQLEVNQLNKIQKEPKLLSELKKLGW 566 (566)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHhhhHHHHHHHHhhcC
Confidence 48999999999999999999999999999999999999999999999999986
No 90
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.84 E-value=2.1e-09 Score=129.63 Aligned_cols=111 Identities=32% Similarity=0.382 Sum_probs=101.2
Q ss_pred CCCCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCccc---------C---C-----------CCCcHHHHHHhcCCHHHH
Q 001480 24 LGGVQKDLCLAVREGSLADVESALALLKKNGGNINSR---------N---I-----------FGLTPLHSAIWRNQVPIV 80 (1071)
Q Consensus 24 ~~~g~TpLh~Aa~~G~~~~v~~lL~lLl~~GadiN~~---------d---~-----------~G~TpLH~Aa~~g~~eiv 80 (1071)
...|.||||.|+.+-+.+.|. +|++.||||+++ | . .|..||-+||..+..+|+
T Consensus 181 eY~GqSaLHiAIv~~~~~~V~----lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eiv 256 (782)
T KOG3676|consen 181 EYYGQSALHIAIVNRDAELVR----LLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIV 256 (782)
T ss_pred hhcCcchHHHHHHhccHHHHH----HHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHH
Confidence 346899999999999999999 899999999865 1 1 378999999999999999
Q ss_pred HHHHhcCCCCCCCCCCCCccccccccccccccchhhhhccccc--cccccCCCCCCcccCC
Q 001480 81 RRLLAAGADPDARDGESGWSSLHRALHFGHLAVASVLLQSGAS--ITLEDCKSRTPVDLLS 139 (1071)
Q Consensus 81 k~LL~~GAd~n~~d~~~G~TpL~~A~~~g~~~vv~lLl~~Ga~--v~l~d~~G~tpLdl~s 139 (1071)
++|+++|||++.+| ..|+|.||....+-..++-.+++.+|++ ....|+.|-||+-|+.
T Consensus 257 rlLl~~gAd~~aqD-S~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAa 316 (782)
T KOG3676|consen 257 RLLLAHGADPNAQD-SNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAA 316 (782)
T ss_pred HHHHhcCCCCCccc-cCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHH
Confidence 99999999999999 8899999999988889999999999999 8899999999998854
No 91
>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]
Probab=98.84 E-value=1.3e-09 Score=129.65 Aligned_cols=108 Identities=31% Similarity=0.301 Sum_probs=95.6
Q ss_pred CHHHHHhCCCCccccCCccccCCCCCCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHH
Q 001480 1 MTELLVSHHGQKQTLQSPARKSSLGGVQKDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIV 80 (1071)
Q Consensus 1 Ive~LL~~ga~~~~~~~~~~~~~~~~g~TpLh~Aa~~G~~~~v~~lL~lLl~~GadiN~~d~~G~TpLH~Aa~~g~~eiv 80 (1071)
|+++|+++.+....+ +..|.+|||+||..|+.++++ +|+.++..+|..+..|.||||.|+.+||.+++
T Consensus 64 is~llle~ea~ldl~--------d~kg~~plhlaaw~g~~e~vk----mll~q~d~~na~~~e~~tplhlaaqhgh~dvv 131 (854)
T KOG0507|consen 64 ISKLLLDYEALLDLC--------DTKGILPLHLAAWNGNLEIVK----MLLLQTDILNAVNIENETPLHLAAQHGHLEVV 131 (854)
T ss_pred HHHHHhcchhhhhhh--------hccCcceEEehhhcCcchHHH----HHHhcccCCCcccccCcCccchhhhhcchHHH
Confidence 467788765543322 345678999999999999999 78888899999999999999999999999999
Q ss_pred HHHHhcCCCCCCCCCCCCccccccccccccccchhhhhccc
Q 001480 81 RRLLAAGADPDARDGESGWSSLHRALHFGHLAVASVLLQSG 121 (1071)
Q Consensus 81 k~LL~~GAd~n~~d~~~G~TpL~~A~~~g~~~vv~lLl~~G 121 (1071)
.+||.+|+|+-++| +++.|+|++|++.|..+++++|+...
T Consensus 132 ~~Ll~~~adp~i~n-ns~~t~ldlA~qfgr~~Vvq~ll~~~ 171 (854)
T KOG0507|consen 132 FYLLKKNADPFIRN-NSKETVLDLASRFGRAEVVQMLLQKK 171 (854)
T ss_pred HHHHhcCCCccccC-cccccHHHHHHHhhhhHHHHHHhhhc
Confidence 99999999999999 88999999999999999999999873
No 92
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=98.83 E-value=5.8e-09 Score=86.14 Aligned_cols=50 Identities=32% Similarity=0.536 Sum_probs=43.7
Q ss_pred CCcEEEEecCCCCCCC-CCCCccCCCCcceeeeeeeecCCCCCCEEEEEecCceEEEE
Q 001480 206 LGEVYTWGYGRGGRLG-HPDFDIHSGQAAVITPRRVTSGLGSRRVKTIAAAKHHTVLA 262 (1071)
Q Consensus 206 dG~Vy~WG~N~~GQLG-~g~~~~~s~~~~v~~P~~V~~~l~~~~Iv~IAcG~~HslaL 262 (1071)
||+||+||.|.+|||| .+ .......|++|. .+...+|++|+||.+|+++|
T Consensus 1 dG~vy~wG~n~~GqLG~~~------~~~~~~~P~~v~-~~~~~~i~~va~G~~ht~~l 51 (51)
T PF00415_consen 1 DGRVYSWGSNDYGQLGSGG------DNKNVSVPTKVP-FLSGVRIVQVACGSDHTLAL 51 (51)
T ss_dssp TSEEEEEEEETTSTTSSSS------SSSEEEEEEEEG-GGTTSEEEEEEEESSEEEEE
T ss_pred CCcEEEEECCCCCCCCCCC------CCCceeEEEEEC-CCCCCCEEEEEeCcceEEEC
Confidence 6999999999999999 43 236788999998 66678999999999999987
No 93
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=98.82 E-value=2.7e-09 Score=88.09 Aligned_cols=49 Identities=35% Similarity=0.546 Sum_probs=46.5
Q ss_pred ceeeeccCCcccccC-CCCcccccCCceeccCCCceEEEEecCCceEEEE
Q 001480 155 TEVFSWGSGANYQLG-TGNAHLQKLPCKVDSLHGFVIKLISAAKFHSVAV 203 (1071)
Q Consensus 155 g~VYsWGsN~~GQLG-~G~~~~~~~P~~V~~l~~~~I~~Va~G~~HslaL 203 (1071)
|+||+||.|.+|||| .+.......|++|+.+.+.+|++|+||..|+++|
T Consensus 2 G~vy~wG~n~~GqLG~~~~~~~~~~P~~v~~~~~~~i~~va~G~~ht~~l 51 (51)
T PF00415_consen 2 GRVYSWGSNDYGQLGSGGDNKNVSVPTKVPFLSGVRIVQVACGSDHTLAL 51 (51)
T ss_dssp SEEEEEEEETTSTTSSSSSSSEEEEEEEEGGGTTSEEEEEEEESSEEEEE
T ss_pred CcEEEEECCCCCCCCCCCCCCceeEEEEECCCCCCCEEEEEeCcceEEEC
Confidence 789999999999999 8888888999999999999999999999999987
No 94
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.78 E-value=6.6e-09 Score=125.38 Aligned_cols=115 Identities=22% Similarity=0.240 Sum_probs=99.4
Q ss_pred CHHHHHhCCCCccccCCcc------ccCC---------CCCCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCCC
Q 001480 1 MTELLVSHHGQKQTLQSPA------RKSS---------LGGVQKDLCLAVREGSLADVESALALLKKNGGNINSRNIFGL 65 (1071)
Q Consensus 1 Ive~LL~~ga~~~~~~~~~------~~~~---------~~~g~TpLh~Aa~~G~~~~v~~lL~lLl~~GadiN~~d~~G~ 65 (1071)
+|++||+.||++++.---. .+.. ..=|+.||..||+.++.++++ +|+++|||+|++|.+|+
T Consensus 199 ~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivr----lLl~~gAd~~aqDS~GN 274 (782)
T KOG3676|consen 199 LVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVR----LLLAHGADPNAQDSNGN 274 (782)
T ss_pred HHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHH----HHHhcCCCCCccccCCC
Confidence 4789999999987642100 0001 123789999999999999999 88899999999999999
Q ss_pred cHHHHHHhcCCHHHHHHHHhcCCC--CCCCCCCCCccccccccccccccchhhhhcc
Q 001480 66 TPLHSAIWRNQVPIVRRLLAAGAD--PDARDGESGWSSLHRALHFGHLAVASVLLQS 120 (1071)
Q Consensus 66 TpLH~Aa~~g~~eivk~LL~~GAd--~n~~d~~~G~TpL~~A~~~g~~~vv~lLl~~ 120 (1071)
|.||..+..-..++-.++|++|++ ..++| ..|.|||.+|++.|+.++.+.+++.
T Consensus 275 TVLH~lVi~~~~~My~~~L~~ga~~l~~v~N-~qgLTPLtLAaklGk~emf~~ile~ 330 (782)
T KOG3676|consen 275 TVLHMLVIHFVTEMYDLALELGANALEHVRN-NQGLTPLTLAAKLGKKEMFQHILER 330 (782)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCCccccccc-cCCCChHHHHHHhhhHHHHHHHHHh
Confidence 999999999999999999999999 88889 8899999999999999999999986
No 95
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]
Probab=98.77 E-value=5.2e-09 Score=112.47 Aligned_cols=108 Identities=23% Similarity=0.319 Sum_probs=97.2
Q ss_pred CCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCccccccc
Q 001480 26 GVQKDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRA 105 (1071)
Q Consensus 26 ~g~TpLh~Aa~~G~~~~v~~lL~lLl~~GadiN~~d~~G~TpLH~Aa~~g~~eivk~LL~~GAd~n~~d~~~G~TpL~~A 105 (1071)
.-..||..+.-.|+.+... .|++.--++|.+|..|.++|..|+..|+.++|++||+.|||+|......+.||||+|
T Consensus 11 ~~~~~Lle~i~Kndt~~a~----~LLs~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFA 86 (396)
T KOG1710|consen 11 APKSPLLEAIDKNDTEAAL----ALLSTVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFA 86 (396)
T ss_pred chhhHHHHHHccCcHHHHH----HHHHHhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHH
Confidence 3457899999999988777 455555569999999999999999999999999999999999998768899999999
Q ss_pred cccccccchhhhhccccccccccCCCCCCccc
Q 001480 106 LHFGHLAVASVLLQSGASITLEDCKSRTPVDL 137 (1071)
Q Consensus 106 ~~~g~~~vv~lLl~~Ga~v~l~d~~G~tpLdl 137 (1071)
+..|+.++.++|++.|+.....+.-|+|+..+
T Consensus 87 ALSGn~dvcrllldaGa~~~~vNsvgrTAaqm 118 (396)
T KOG1710|consen 87 ALSGNQDVCRLLLDAGARMYLVNSVGRTAAQM 118 (396)
T ss_pred HHcCCchHHHHHHhccCccccccchhhhHHHH
Confidence 99999999999999999999999999998765
No 96
>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A.
Probab=98.76 E-value=8.4e-09 Score=87.28 Aligned_cols=56 Identities=32% Similarity=0.319 Sum_probs=31.1
Q ss_pred HHhCCCCccccCCccccCCCCCCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHH
Q 001480 5 LVSHHGQKQTLQSPARKSSLGGVQKDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSA 71 (1071)
Q Consensus 5 LL~~ga~~~~~~~~~~~~~~~~g~TpLh~Aa~~G~~~~v~~lL~lLl~~GadiN~~d~~G~TpLH~A 71 (1071)
||+++....+. .+..|+||||+||..|+.++++ +|++.|+|++.+|..|+||||+|
T Consensus 1 LL~~~~~~~n~-------~d~~G~T~LH~A~~~g~~~~v~----~Ll~~g~d~~~~d~~G~Tpl~~A 56 (56)
T PF13857_consen 1 LLEHGPADVNA-------QDKYGNTPLHWAARYGHSEVVR----LLLQNGADPNAKDKDGQTPLHYA 56 (56)
T ss_dssp -----T--TT----------TTS--HHHHHHHHT-HHHHH----HHHHCT--TT---TTS--HHHH-
T ss_pred CCccCcCCCcC-------cCCCCCcHHHHHHHcCcHHHHH----HHHHCcCCCCCCcCCCCCHHHhC
Confidence 56766333332 2457889999999999999999 78899999999999999999997
No 97
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=98.74 E-value=1.3e-08 Score=75.11 Aligned_cols=30 Identities=47% Similarity=0.721 Sum_probs=26.1
Q ss_pred EEEEEecCceEEEEEcCCcEEEEeCCCCCC
Q 001480 249 VKTIAAAKHHTVLATEGGEVFTWGSNREGQ 278 (1071)
Q Consensus 249 Iv~IAcG~~HslaLT~dG~VyswG~N~~GQ 278 (1071)
|++|+||.+|+++|+++|+||+||.|.+||
T Consensus 1 V~~ia~G~~ht~al~~~g~v~~wG~n~~GQ 30 (30)
T PF13540_consen 1 VVQIACGGYHTCALTSDGEVYCWGDNNYGQ 30 (30)
T ss_dssp EEEEEEESSEEEEEE-TTEEEEEE--TTST
T ss_pred CEEEEecCCEEEEEEcCCCEEEEcCCcCCC
Confidence 789999999999999999999999999998
No 98
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=98.72 E-value=1.3e-08 Score=75.06 Aligned_cols=30 Identities=37% Similarity=0.782 Sum_probs=26.1
Q ss_pred EEEEEEcCCceeEEecCCcEEEEeCCCCCC
Q 001480 300 IIAVAAANKHTAVVSESGEVFTWGCNREGQ 329 (1071)
Q Consensus 300 Iv~VacG~~HSlaLT~dG~VY~WG~N~~GQ 329 (1071)
|++|+||.+|+++|+++|+||+||.|.+||
T Consensus 1 V~~ia~G~~ht~al~~~g~v~~wG~n~~GQ 30 (30)
T PF13540_consen 1 VVQIACGGYHTCALTSDGEVYCWGDNNYGQ 30 (30)
T ss_dssp EEEEEEESSEEEEEE-TTEEEEEE--TTST
T ss_pred CEEEEecCCEEEEEEcCCCEEEEcCCcCCC
Confidence 789999999999999999999999999998
No 99
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=3.5e-10 Score=136.16 Aligned_cols=182 Identities=23% Similarity=0.371 Sum_probs=136.4
Q ss_pred cCCceeccCCCceEEEEecCCceEEEEecCCcEEEEecCCCCCCCCCCCccCCCCcceeeeeeeecCCCCCCEEEEEecC
Q 001480 177 KLPCKVDSLHGFVIKLISAAKFHSVAVTSLGEVYTWGYGRGGRLGHPDFDIHSGQAAVITPRRVTSGLGSRRVKTIAAAK 256 (1071)
Q Consensus 177 ~~P~~V~~l~~~~I~~Va~G~~HslaLT~dG~Vy~WG~N~~GQLG~g~~~~~s~~~~v~~P~~V~~~l~~~~Iv~IAcG~ 256 (1071)
..|+.+..+....|.+|+||.+|+++++..|++|+||.|.+||+|.+.. . .... |..+. .+.+....+|+||.
T Consensus 3 ~~~~~~~~l~~k~~lq~~cGn~hclal~~~g~~~~wg~~~~g~~~~~~~---~--~~~~-p~~~~-sl~g~p~a~v~~g~ 75 (850)
T KOG0941|consen 3 RAPRLVLILNYKHILQVGCGNNHCLALSCAGELFVWGMNNNGQLGRALY---F--PDAK-PEPVE-SLKGVPLAQVSAGE 75 (850)
T ss_pred chhHHHHHHhhhhhhhhccccHHHHhhhccCCeeeccCCccchhhhhcc---C--CCCC-Cccch-hhcCCcHHHHhcCC
Confidence 3567777777788999999999999999999999999999999999832 1 1122 77777 77888999999999
Q ss_pred ceEEEEEc-------CCcEEEEeCCCCCCcCCCCCCCCCcceeecc-CcccEEEEEEcCCceeEE-ecCCcEEEEeCCCC
Q 001480 257 HHTVLATE-------GGEVFTWGSNREGQLGYTSVDTQPTPRRVSS-LKLKIIAVAAANKHTAVV-SESGEVFTWGCNRE 327 (1071)
Q Consensus 257 ~HslaLT~-------dG~VyswG~N~~GQLG~g~~~~~~~P~~V~~-l~~~Iv~VacG~~HSlaL-T~dG~VY~WG~N~~ 327 (1071)
.|+++++. +|.++++|....||+|+........|..+.. ....+.+|+||..|+.++ ..-|++|.+|.+..
T Consensus 76 ~hs~~lS~~~~~lt~e~~~fs~Ga~~~~q~~h~~~~~~~~~~~v~e~i~~~~t~ia~~~~ht~a~v~~l~qsf~~~~~~s 155 (850)
T KOG0941|consen 76 AHSFALSSHTVLLTDEGKVFSFGAGSTGQLGHSLTENEVLPLLVLELIGSRVTRIACVRGHTLAIVPRLGQSFSFGKGAS 155 (850)
T ss_pred CcchhhhhchhhcchhccccccCCcccccccccccccccccHHHHHHHhhhhHHHHHHHHHHHhhhhhhcceeecccCCC
Confidence 99888766 9999999999999999966666666666653 346899999999999986 55689999999888
Q ss_pred C--CcCCCCCCCCCcccceeeec---cCCCCEEEEEecCCeEEEEeeCCc
Q 001480 328 G--QLGYGTSNSASNYTPRVVES---LKGKDLVGVAAAKYHTIVLGADGE 372 (1071)
Q Consensus 328 G--QLG~g~~~~~~~~~P~~V~~---l~~~~I~~IaaG~~htlaLt~dG~ 372 (1071)
| ++-. ...+..... .....+..+.+|.+.+..|...+.
T Consensus 156 Gk~~i~s-------~s~~~~l~~~d~~~~~~~~~~~~g~dq~~~l~~~~~ 198 (850)
T KOG0941|consen 156 GKGVIVS-------LSGEDLLRDHDSEKDHRCSLAFAGGDQTFSLSSKGE 198 (850)
T ss_pred CCceeec-------cchhhhcccccHHHHHHHHHHhcCCCceEEEEeecc
Confidence 7 1100 001100110 011234557788888888866554
No 100
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=98.70 E-value=3.4e-08 Score=123.11 Aligned_cols=92 Identities=18% Similarity=0.134 Sum_probs=80.3
Q ss_pred HHHHHhCCCCccccCCccccCCCCCCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHH
Q 001480 2 TELLVSHHGQKQTLQSPARKSSLGGVQKDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVR 81 (1071)
Q Consensus 2 ve~LL~~ga~~~~~~~~~~~~~~~~g~TpLh~Aa~~G~~~~v~~lL~lLl~~GadiN~~d~~G~TpLH~Aa~~g~~eivk 81 (1071)
+++||++|++.+.. +..|.||||+||..|+.++++ +|+++|+|+|.+|..|.||||+|+..|+.++++
T Consensus 98 vk~LL~~Gadin~~--------d~~G~TpLh~Aa~~g~~eiv~----~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~ 165 (664)
T PTZ00322 98 ARILLTGGADPNCR--------DYDGRTPLHIACANGHVQVVR----VLLEFGADPTLLDKDGKTPLELAEENGFREVVQ 165 (664)
T ss_pred HHHHHHCCCCCCCc--------CCCCCcHHHHHHHCCCHHHHH----HHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHH
Confidence 68899988775432 356789999999999999999 889999999999999999999999999999999
Q ss_pred HHHhc-------CCCCCCCCCCCCcccccccc
Q 001480 82 RLLAA-------GADPDARDGESGWSSLHRAL 106 (1071)
Q Consensus 82 ~LL~~-------GAd~n~~d~~~G~TpL~~A~ 106 (1071)
+|+++ |++++..+ ..|.+|+..+.
T Consensus 166 ~Ll~~~~~~~~~ga~~~~~~-~~g~~~~~~~~ 196 (664)
T PTZ00322 166 LLSRHSQCHFELGANAKPDS-FTGKPPSLEDS 196 (664)
T ss_pred HHHhCCCcccccCCCCCccc-cCCCCccchhh
Confidence 99999 88888888 67888866543
No 101
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=8.6e-10 Score=132.82 Aligned_cols=172 Identities=24% Similarity=0.380 Sum_probs=129.0
Q ss_pred CCCCCCEEEEEecCceEEEEEcCCcEEEEeCCCCCCcCCCCCCCCCcceeeccCc-ccEEEEEEcCCceeEEec------
Q 001480 243 GLGSRRVKTIAAAKHHTVLATEGGEVFTWGSNREGQLGYTSVDTQPTPRRVSSLK-LKIIAVAAANKHTAVVSE------ 315 (1071)
Q Consensus 243 ~l~~~~Iv~IAcG~~HslaLT~dG~VyswG~N~~GQLG~g~~~~~~~P~~V~~l~-~~Iv~VacG~~HSlaLT~------ 315 (1071)
.+...+|.+++||.+|+++++..|++|+||.|.+||+|.+.......|..+..+. ....+|+||..|++++..
T Consensus 10 ~l~~k~~lq~~cGn~hclal~~~g~~~~wg~~~~g~~~~~~~~~~~~p~~~~sl~g~p~a~v~~g~~hs~~lS~~~~~lt 89 (850)
T KOG0941|consen 10 ILNYKHILQVGCGNNHCLALSCAGELFVWGMNNNGQLGRALYFPDAKPEPVESLKGVPLAQVSAGEAHSFALSSHTVLLT 89 (850)
T ss_pred HHhhhhhhhhccccHHHHhhhccCCeeeccCCccchhhhhccCCCCCCccchhhcCCcHHHHhcCCCcchhhhhchhhcc
Confidence 3455689999999999999999999999999999999998444333488887664 578899999998887765
Q ss_pred -CCcEEEEeCCCCCCcCCCCCCCCCcccceeeeccCCCCEEEEEecCCeEEEEe-eCCcEEEEecCCCCC--CCccce--
Q 001480 316 -SGEVFTWGCNREGQLGYGTSNSASNYTPRVVESLKGKDLVGVAAAKYHTIVLG-ADGERVIVARNLKKS--GSTPLK-- 389 (1071)
Q Consensus 316 -dG~VY~WG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~I~~IaaG~~htlaLt-~dG~Vy~wG~n~~~~--~~~p~~-- 389 (1071)
+|.++.+|....||+|+.... ....|..+..+-+..+..|+||..|+++.. .-|++|.+|.+..+. ...+..
T Consensus 90 ~e~~~fs~Ga~~~~q~~h~~~~--~~~~~~~v~e~i~~~~t~ia~~~~ht~a~v~~l~qsf~~~~~~sGk~~i~s~s~~~ 167 (850)
T KOG0941|consen 90 DEGKVFSFGAGSTGQLGHSLTE--NEVLPLLVLELIGSRVTRIACVRGHTLAIVPRLGQSFSFGKGASGKGVIVSLSGED 167 (850)
T ss_pred hhccccccCCcccccccccccc--cccccHHHHHHHhhhhHHHHHHHHHHHhhhhhhcceeecccCCCCCceeeccchhh
Confidence 999999999999999994433 355788887777889999999998888764 458899998876541 111111
Q ss_pred ---ecc-ccCCcEEEEEeCCCcceEEecCCc
Q 001480 390 ---FHR-KIKLHVVSIAAGMVHSTALTEDGA 416 (1071)
Q Consensus 390 ---~~~-~~~~~I~~Ia~G~~hslaLt~dG~ 416 (1071)
.+. .....+..+.+|+..++.+...+.
T Consensus 168 ~l~~~d~~~~~~~~~~~~g~dq~~~l~~~~~ 198 (850)
T KOG0941|consen 168 LLRDHDSEKDHRCSLAFAGGDQTFSLSSKGE 198 (850)
T ss_pred hcccccHHHHHHHHHHhcCCCceEEEEeecc
Confidence 000 011134557788888877765543
No 102
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=98.55 E-value=5e-08 Score=110.79 Aligned_cols=95 Identities=26% Similarity=0.383 Sum_probs=86.2
Q ss_pred CCCCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHhc-CCCCCCCCCCCCcccc
Q 001480 24 LGGVQKDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAA-GADPDARDGESGWSSL 102 (1071)
Q Consensus 24 ~~~g~TpLh~Aa~~G~~~~v~~lL~lLl~~GadiN~~d~~G~TpLH~Aa~~g~~eivk~LL~~-GAd~n~~d~~~G~TpL 102 (1071)
.+++..++.+||+.|++..++ .+.-.|.|++.+|.+.+|+||.||..|+.++|++||+. +.+++.+| .+|+|||
T Consensus 503 ~~~~~i~~~~aa~~GD~~alr----Rf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kD-Rw~rtPl 577 (622)
T KOG0506|consen 503 ENDTVINVMYAAKNGDLSALR----RFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKD-RWGRTPL 577 (622)
T ss_pred cccchhhhhhhhhcCCHHHHH----HHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhh-ccCCCcc
Confidence 456778899999999999888 55567999999999999999999999999999999987 69999999 9999999
Q ss_pred ccccccccccchhhhhccccc
Q 001480 103 HRALHFGHLAVASVLLQSGAS 123 (1071)
Q Consensus 103 ~~A~~~g~~~vv~lLl~~Ga~ 123 (1071)
+-|.+++|.+|+++|-++...
T Consensus 578 DdA~~F~h~~v~k~L~~~~~~ 598 (622)
T KOG0506|consen 578 DDAKHFKHKEVVKLLEEAQYP 598 (622)
T ss_pred hHhHhcCcHHHHHHHHHHhcc
Confidence 999999999999999876543
No 103
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]
Probab=98.46 E-value=1.4e-07 Score=115.15 Aligned_cols=123 Identities=28% Similarity=0.316 Sum_probs=108.0
Q ss_pred CHHHHHhCCCCccccCCccccCCCCCCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccC--CCCCcHHHHHHhcCCHH
Q 001480 1 MTELLVSHHGQKQTLQSPARKSSLGGVQKDLCLAVREGSLADVESALALLKKNGGNINSRN--IFGLTPLHSAIWRNQVP 78 (1071)
Q Consensus 1 Ive~LL~~ga~~~~~~~~~~~~~~~~g~TpLh~Aa~~G~~~~v~~lL~lLl~~GadiN~~d--~~G~TpLH~Aa~~g~~e 78 (1071)
+|++||.+|+++.. + +.+.+|||.+|..-|..+++. +|+.+|+.||.+. ..|..||++|+++||.+
T Consensus 839 vvelLl~~gankeh-----r---nvsDytPlsla~Sggy~~iI~----~llS~GseInSrtgSklgisPLmlatmngh~~ 906 (2131)
T KOG4369|consen 839 VVELLLNAGANKEH-----R---NVSDYTPLSLARSGGYTKIIH----ALLSSGSEINSRTGSKLGISPLMLATMNGHQA 906 (2131)
T ss_pred HHHHHHHhhccccc-----c---chhhcCchhhhcCcchHHHHH----HHhhcccccccccccccCcchhhhhhhccccH
Confidence 47899998888553 2 345679999999999988888 8889999999886 66899999999999999
Q ss_pred HHHHHHhcCCCCCCCCCCCCccccccccccccccchhhhhccccccccccCCCCCCc
Q 001480 79 IVRRLLAAGADPDARDGESGWSSLHRALHFGHLAVASVLLQSGASITLEDCKSRTPV 135 (1071)
Q Consensus 79 ivk~LL~~GAd~n~~d~~~G~TpL~~A~~~g~~~vv~lLl~~Ga~v~l~d~~G~tpL 135 (1071)
.++.||+.|-|+|..-..+-+|+|-+|+..|+.+++.+||.+.+.+..+...|.||+
T Consensus 907 at~~ll~~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~anvehRaktgltpl 963 (2131)
T KOG4369|consen 907 ATLSLLQPGSDINAQIETNRNTALTLALFQGRPEVVFLLLAAQANVEHRAKTGLTPL 963 (2131)
T ss_pred HHHHHhcccchhccccccccccceeeccccCcchHHHHHHHHhhhhhhhcccCCccc
Confidence 999999999999987656788999999999999999999999999999999999986
No 104
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]
Probab=98.42 E-value=9.8e-08 Score=116.36 Aligned_cols=127 Identities=30% Similarity=0.414 Sum_probs=112.8
Q ss_pred CCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCccccccc
Q 001480 26 GVQKDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRA 105 (1071)
Q Consensus 26 ~g~TpLh~Aa~~G~~~~v~~lL~lLl~~GadiN~~d~~G~TpLH~Aa~~g~~eivk~LL~~GAd~n~~d~~~G~TpL~~A 105 (1071)
.-.|+|-.||..|+.+.++ +|+..|+++..+|.-|.+||.+|+..||..+|+.||.+-++++.+..+.+.|+|.+|
T Consensus 756 n~~t~LT~acaggh~e~ve----llv~rganiehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSla 831 (2131)
T KOG4369|consen 756 NIKTNLTSACAGGHREEVE----LLVVRGANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLA 831 (2131)
T ss_pred cccccccccccCccHHHHH----HHHHhcccccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEe
Confidence 3468899999999999999 899999999999999999999999999999999999999999998768899999999
Q ss_pred cccccccchhhhhccccccccccCCCCCCcccCCCCceeeeccccccccceeeeccCC
Q 001480 106 LHFGHLAVASVLLQSGASITLEDCKSRTPVDLLSGPVLQVVGSGYNSVATEVFSWGSG 163 (1071)
Q Consensus 106 ~~~g~~~vv~lLl~~Ga~v~l~d~~G~tpLdl~sg~v~qa~~~~~~~~~g~VYsWGsN 163 (1071)
|..|+.+++++||.+|+.-..++....+|+.|++. .+|.-++.-+++-|+-
T Consensus 832 csggr~~vvelLl~~gankehrnvsDytPlsla~S-------ggy~~iI~~llS~Gse 882 (2131)
T KOG4369|consen 832 CSGGRTRVVELLLNAGANKEHRNVSDYTPLSLARS-------GGYTKIIHALLSSGSE 882 (2131)
T ss_pred cCCCcchHHHHHHHhhccccccchhhcCchhhhcC-------cchHHHHHHHhhcccc
Confidence 99999999999999999999999999999988654 3444444556677743
No 105
>PHA03098 kelch-like protein; Provisional
Probab=98.40 E-value=2.2e-07 Score=113.18 Aligned_cols=92 Identities=15% Similarity=0.248 Sum_probs=79.1
Q ss_pred hcccCCCCCCCCCCcc--cccccccchhHHHHHHHHHHhhcCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhhhhhhhh
Q 001480 529 DFMFNDESNNMPSAID--KDDSGVRLAPSLKSLCENVAAQCLVEPRNALQLLEISDSLGADDLKKHCEDIAIRNLDYILT 606 (1071)
Q Consensus 529 dfmYtD~~~~~~~~~~--~~aAd~y~~~~LK~lCE~~l~~~~v~~~nv~~il~lA~~~~~~~Lk~~C~~f~~~nld~v~~ 606 (1071)
+||||+.+.-..+... ..+|+.|.++.|+.+|++.|..+ ++++|++.++++|+.|+|..|+++|.+|+..|+..|.
T Consensus 64 ~y~Ytg~~~i~~~~~~~ll~~A~~l~~~~l~~~C~~~l~~~-l~~~nc~~~~~~a~~~~~~~L~~~~~~~i~~nf~~v~- 141 (534)
T PHA03098 64 KYIYTGKINITSNNVKDILSIANYLIIDFLINLCINYIIKI-IDDNNCIDIYRFSFFYGCKKLYSAAYNYIRNNIELIY- 141 (534)
T ss_pred HHhcCCceEEcHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh-CCHhHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHh-
Confidence 8999995421111111 11899999999999999999997 9999999999999999999999999999999999999
Q ss_pred cccchhccccHHHHHHH
Q 001480 607 VSSHSFASASLDILADL 623 (1071)
Q Consensus 607 ~~~~~f~~l~~~~l~el 623 (1071)
.++.|..|+.+.|.+|
T Consensus 142 -~~~~f~~l~~~~l~~l 157 (534)
T PHA03098 142 -NDPDFIYLSKNELIKI 157 (534)
T ss_pred -cCchhhcCCHHHHHHH
Confidence 9999999998776666
No 106
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]
Probab=98.36 E-value=4.6e-07 Score=103.47 Aligned_cols=90 Identities=33% Similarity=0.345 Sum_probs=76.3
Q ss_pred chHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccC-CCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCcccccccc
Q 001480 28 QKDLCLAVREGSLADVESALALLKKNGGNINSRN-IFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRAL 106 (1071)
Q Consensus 28 ~TpLh~Aa~~G~~~~v~~lL~lLl~~GadiN~~d-~~G~TpLH~Aa~~g~~eivk~LL~~GAd~n~~d~~~G~TpL~~A~ 106 (1071)
...||..++.|+++..- .|+..||++|..+ ..|.||||.|+..|...-+++|+-+|||++..| .+|+||+.+|.
T Consensus 134 srQLhasvRt~nlet~L----Rll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d-~~GmtP~~~AR 208 (669)
T KOG0818|consen 134 SKQLHSSVRTGNLETCL----RLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQD-SSGMTPVDYAR 208 (669)
T ss_pred HHHHHHHhhcccHHHHH----HHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCC-CCCCcHHHHHH
Confidence 45689999999888766 5667899999887 558999999999999999999999999999999 78999999999
Q ss_pred ccccccchhhhhcccc
Q 001480 107 HFGHLAVASVLLQSGA 122 (1071)
Q Consensus 107 ~~g~~~vv~lLl~~Ga 122 (1071)
..||.++++.|++.-.
T Consensus 209 ~~gH~~laeRl~e~~y 224 (669)
T KOG0818|consen 209 QGGHHELAERLVEIQY 224 (669)
T ss_pred hcCchHHHHHHHHHHH
Confidence 9999998888887533
No 107
>PF13606 Ank_3: Ankyrin repeat
Probab=98.24 E-value=1.1e-06 Score=64.87 Aligned_cols=30 Identities=47% Similarity=0.587 Sum_probs=26.2
Q ss_pred CCCcHHHHHHhcCCHHHHHHHHhcCCCCCC
Q 001480 63 FGLTPLHSAIWRNQVPIVRRLLAAGADPDA 92 (1071)
Q Consensus 63 ~G~TpLH~Aa~~g~~eivk~LL~~GAd~n~ 92 (1071)
+|+||||+||..|+.+++++||++|+|+|.
T Consensus 1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn~ 30 (30)
T PF13606_consen 1 NGNTPLHLAASNGNIEIVKYLLEHGADVNA 30 (30)
T ss_pred CCCCHHHHHHHhCCHHHHHHHHHcCCCCCC
Confidence 588999999999999999999999988874
No 108
>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....
Probab=98.22 E-value=1.5e-06 Score=65.41 Aligned_cols=32 Identities=53% Similarity=0.623 Sum_probs=29.7
Q ss_pred CCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCC
Q 001480 63 FGLTPLHSAIWRNQVPIVRRLLAAGADPDARD 94 (1071)
Q Consensus 63 ~G~TpLH~Aa~~g~~eivk~LL~~GAd~n~~d 94 (1071)
+|+||||+||.+|+.+++++||++|++++.+|
T Consensus 1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d 32 (33)
T PF00023_consen 1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARD 32 (33)
T ss_dssp TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBC
T ss_pred CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCC
Confidence 58999999999999999999999999999887
No 109
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=98.22 E-value=1.2e-06 Score=101.84 Aligned_cols=91 Identities=32% Similarity=0.334 Sum_probs=77.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCC--CCcc--cCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCccccccc
Q 001480 30 DLCLAVREGSLADVESALALLKKNGG--NINS--RNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRA 105 (1071)
Q Consensus 30 pLh~Aa~~G~~~~v~~lL~lLl~~Ga--diN~--~d~~G~TpLH~Aa~~g~~eivk~LL~~GAd~n~~d~~~G~TpL~~A 105 (1071)
.|.-|....++..+- +|+.||. .+|. -+.+|+|+||+||..|++.+.++|+.+|+|+..+| ..|+|+|.||
T Consensus 627 qLl~A~~~~Dl~t~~----lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rd-a~g~t~l~ya 701 (749)
T KOG0705|consen 627 QLLRAVAAEDLQTAI----LLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARD-AHGRTALFYA 701 (749)
T ss_pred HHHHHHHHHHHHHHH----HHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecc-cCCchhhhhH
Confidence 367777766655555 7888885 3443 35778999999999999999999999999999999 8899999999
Q ss_pred cccccccchhhhhccccccc
Q 001480 106 LHFGHLAVASVLLQSGASIT 125 (1071)
Q Consensus 106 ~~~g~~~vv~lLl~~Ga~v~ 125 (1071)
.+.|..+|+.+|+++|+..+
T Consensus 702 r~a~sqec~d~llq~gcp~e 721 (749)
T KOG0705|consen 702 RQAGSQECIDVLLQYGCPDE 721 (749)
T ss_pred hhcccHHHHHHHHHcCCCcc
Confidence 99999999999999998654
No 110
>KOG0522 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.13 E-value=1.7e-06 Score=100.46 Aligned_cols=89 Identities=36% Similarity=0.484 Sum_probs=77.0
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCcccccccccc
Q 001480 29 KDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRALHF 108 (1071)
Q Consensus 29 TpLh~Aa~~G~~~~v~~lL~lLl~~GadiN~~d~~G~TpLH~Aa~~g~~eivk~LL~~GAd~n~~d~~~G~TpL~~A~~~ 108 (1071)
.|||+++...+.+-+...+ +.+....|+.+|..|+||||+|++.|+.+.++.|+.+||++..+| ..||+|||.|+..
T Consensus 22 ~~lh~~~~~~~~~sl~~el--~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN-~~gWs~L~EAv~~ 98 (560)
T KOG0522|consen 22 KPLHWAVVTTDSDSLEQEL--LAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKN-NEGWSPLHEAVST 98 (560)
T ss_pred cccchhhhccchhhHHHHH--hhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccc-cccccHHHHHHHc
Confidence 4699999998887766322 334567899999999999999999999999999999999999999 8899999999999
Q ss_pred ccccchhhhhcc
Q 001480 109 GHLAVASVLLQS 120 (1071)
Q Consensus 109 g~~~vv~lLl~~ 120 (1071)
|+.+++..++.+
T Consensus 99 g~~q~i~~vlr~ 110 (560)
T KOG0522|consen 99 GNEQIITEVLRH 110 (560)
T ss_pred CCHHHHHHHHHH
Confidence 999887766653
No 111
>KOG4325 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.07 E-value=7.5e-06 Score=81.27 Aligned_cols=58 Identities=24% Similarity=0.443 Sum_probs=42.8
Q ss_pred CCCCccchhHHHHHHHHHHHHHHHHHHHHHHHCCCCC--CHHHHHHhhhHHHHHHHHHHc
Q 001480 688 EPKADANQEISKQVRALRKKLQQIEMLEVKLSNGHIL--DEQQIAKLQTKSVLERSLAEL 745 (1071)
Q Consensus 688 ~~~~~~~~~~~k~~r~l~kkl~~ie~l~~k~~~g~~l--~~~q~~k~~~~~~~~~~l~~l 745 (1071)
++++++..+.+|+||+|+||||+.|+|++|+++|+.- .++|++||.....++++|+.+
T Consensus 151 ~~dsaa~edkaKkIkaLKKKiR~tEalQQkiaagdln~~qkEkfeKLaerRa~eeaLED~ 210 (212)
T KOG4325|consen 151 PGDSAAGEDKAKKIKALKKKIRLTEALQQKIAAGDLNPEQKEKFEKLAERRAEEEALEDK 210 (212)
T ss_pred CCcccchhhHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3455667899999999999999999999999999843 344455555555555555443
No 112
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]
Probab=98.03 E-value=2.2e-06 Score=98.13 Aligned_cols=92 Identities=29% Similarity=0.369 Sum_probs=81.6
Q ss_pred CcccCCCCCcH------HHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCccccccccccccccchhhhhccccccccccCC
Q 001480 57 INSRNIFGLTP------LHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRALHFGHLAVASVLLQSGASITLEDCK 130 (1071)
Q Consensus 57 iN~~d~~G~Tp------LH~Aa~~g~~eivk~LL~~GAd~n~~d~~~G~TpL~~A~~~g~~~vv~lLl~~Ga~v~l~d~~ 130 (1071)
.-.+|.+|.|+ ||.+++.|+.+.+-.||..||++|.-+.+.|.||||+|++.|+..-+++|+-|||++...|.+
T Consensus 120 ~~~rDdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~ 199 (669)
T KOG0818|consen 120 LPCRDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSS 199 (669)
T ss_pred CCCCCcchhhHHHHHHHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCC
Confidence 44677777664 899999999999999999999999999889999999999999999999999999999999999
Q ss_pred CCCCcccCCCCceeeeccccccccc
Q 001480 131 SRTPVDLLSGPVLQVVGSGYNSVAT 155 (1071)
Q Consensus 131 G~tpLdl~sg~v~qa~~~~~~~~~g 155 (1071)
|.+|+|| +..++|+.++-
T Consensus 200 GmtP~~~-------AR~~gH~~lae 217 (669)
T KOG0818|consen 200 GMTPVDY-------ARQGGHHELAE 217 (669)
T ss_pred CCcHHHH-------HHhcCchHHHH
Confidence 9999998 44566666553
No 113
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]
Probab=97.88 E-value=9.7e-06 Score=93.73 Aligned_cols=86 Identities=24% Similarity=0.280 Sum_probs=42.0
Q ss_pred chHHHHHHHcCCHHHHHHHHHHHHhCCCC--CcccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCccccccc
Q 001480 28 QKDLCLAVREGSLADVESALALLKKNGGN--INSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRA 105 (1071)
Q Consensus 28 ~TpLh~Aa~~G~~~~v~~lL~lLl~~Gad--iN~~d~~G~TpLH~Aa~~g~~eivk~LL~~GAd~n~~d~~~G~TpL~~A 105 (1071)
.+.||||+..|+-++|+ +++++|-. +++.|..|.|+||-|+..++..+|++|+++||.+...| ..|.||-..|
T Consensus 900 ~sllh~a~~tg~~eivk----yildh~p~elld~~de~get~lhkaa~~~~r~vc~~lvdagasl~ktd-~kg~tp~era 974 (1004)
T KOG0782|consen 900 CSLLHYAAKTGNGEIVK----YILDHGPSELLDMADETGETALHKAACQRNRAVCQLLVDAGASLRKTD-SKGKTPQERA 974 (1004)
T ss_pred hhHHHHHHhcCChHHHH----HHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHHHHHHhcchhheecc-cCCCChHHHH
Confidence 34455555555554444 44444421 34444455555555555555555555555555555444 4455555555
Q ss_pred cccccccchhhhh
Q 001480 106 LHFGHLAVASVLL 118 (1071)
Q Consensus 106 ~~~g~~~vv~lLl 118 (1071)
.+.|..+++.+|-
T Consensus 975 qqa~d~dlaayle 987 (1004)
T KOG0782|consen 975 QQAGDPDLAAYLE 987 (1004)
T ss_pred HhcCCchHHHHHh
Confidence 5555555544443
No 114
>PHA02713 hypothetical protein; Provisional
Probab=97.85 E-value=1.6e-05 Score=97.61 Aligned_cols=93 Identities=14% Similarity=0.259 Sum_probs=78.5
Q ss_pred hhhcccCCCCCCCCCCcc-cccccccchhHHHHHHHHHHhhcCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhhhhhhh
Q 001480 527 YEDFMFNDESNNMPSAID-KDDSGVRLAPSLKSLCENVAAQCLVEPRNALQLLEISDSLGADDLKKHCEDIAIRNLDYIL 605 (1071)
Q Consensus 527 ~edfmYtD~~~~~~~~~~-~~aAd~y~~~~LK~lCE~~l~~~~v~~~nv~~il~lA~~~~~~~Lk~~C~~f~~~nld~v~ 605 (1071)
.-+|+||..... ....+ ..||+.+.+++|+.+|+.-|.++ ++++|++.|+.+|..+.|..|+++|.+|+.+||..|.
T Consensus 82 ll~y~Yt~~i~~-~nv~~ll~aA~~lqi~~l~~~C~~~l~~~-l~~~NCl~i~~~~~~~~~~~L~~~a~~~i~~~f~~v~ 159 (557)
T PHA02713 82 IVQYLYNRHISS-MNVIDVLKCADYLLIDDLVTDCESYIKDY-TNHDTCIYMYHRLYEMSHIPIVKYIKRMLMSNIPTLI 159 (557)
T ss_pred HHHHhcCCCCCH-HHHHHHHHHHHHHCHHHHHHHHHHHHHhh-CCccchHHHHHHHHhccchHHHHHHHHHHHHHHHHHh
Confidence 348999974211 11001 11899999999999999999997 9999999999999999999999999999999999999
Q ss_pred hcccchhccccHHHHHHH
Q 001480 606 TVSSHSFASASLDILADL 623 (1071)
Q Consensus 606 ~~~~~~f~~l~~~~l~el 623 (1071)
.++.|..|+.+-|.+|
T Consensus 160 --~~~ef~~L~~~~l~~l 175 (557)
T PHA02713 160 --TTDAFKKTVFEILFDI 175 (557)
T ss_pred --CChhhhhCCHHHHHHH
Confidence 9999999998776666
No 115
>PHA02790 Kelch-like protein; Provisional
Probab=97.83 E-value=7.4e-06 Score=98.83 Aligned_cols=123 Identities=10% Similarity=0.064 Sum_probs=89.3
Q ss_pred eEEEEEe---CCCCccCCCCCCCCCcccc---CCCcchhhhhhhcccCCCCCCCCCCccc--ccccccchhHHHHHHHHH
Q 001480 492 HLLIVGS---LYHPIYPPNVAKNPQKLKL---NGRNDLEEFYEDFMFNDESNNMPSAIDK--DDSGVRLAPSLKSLCENV 563 (1071)
Q Consensus 492 HtlaL~s---~~~~v~~wG~~~~gq~g~~---~~~~~i~el~edfmYtD~~~~~~~~~~~--~aAd~y~~~~LK~lCE~~ 563 (1071)
|=++|++ .+..+|+-|+.+..+.-.+ ..+.+.-+..-+|+||....=..+.++. .||+.+.++.++..|++-
T Consensus 36 HR~VLAa~S~YFraMF~~~~~Es~~~v~~~~~~v~~~~l~~lldy~YTg~l~it~~nV~~ll~aA~~Lqi~~v~~~C~~f 115 (480)
T PHA02790 36 NSTILKKLSPYFRTHLRQKYTKNKDPVTRVCLDLDIHSLTSIVIYSYTGKVYIDSHNVVNLLRASILTSVEFIIYTCINF 115 (480)
T ss_pred ehhhhhhcCHHHHHHhcCCccccccceEEEecCcCHHHHHHHHHhheeeeEEEecccHHHHHHHHHHhChHHHHHHHHHH
Confidence 4445543 2355777788776432111 1222222333489999843211111111 289999999999999999
Q ss_pred HhhcCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhhhhhhhhccc--chhccccH
Q 001480 564 AAQCLVEPRNALQLLEISDSLGADDLKKHCEDIAIRNLDYILTVSS--HSFASASL 617 (1071)
Q Consensus 564 l~~~~v~~~nv~~il~lA~~~~~~~Lk~~C~~f~~~nld~v~~~~~--~~f~~l~~ 617 (1071)
|.+. |+++|.+.|+.+|+.|+|.+|++.+.+|+.+||-.|. .+ +.|..|+.
T Consensus 116 L~~~-l~~~NCl~i~~~A~~y~~~~L~~~a~~fi~~nF~~v~--~~~~~ef~~L~~ 168 (480)
T PHA02790 116 ILRD-FRKEYCVECYMMGIEYGLSNLLCHTKDFIAKHFLELE--DDIIDNFDYLSM 168 (480)
T ss_pred HHhh-CCcchHHHHHHHHHHhCHHHHHHHHHHHHHHhHHHHh--cccchhhhhCCH
Confidence 9997 9999999999999999999999999999999999998 54 78888874
No 116
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]
Probab=97.83 E-value=1.1e-05 Score=93.41 Aligned_cols=101 Identities=30% Similarity=0.353 Sum_probs=89.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHhcCC--CCCCCCCCCCcccccccccc
Q 001480 31 LCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGA--DPDARDGESGWSSLHRALHF 108 (1071)
Q Consensus 31 Lh~Aa~~G~~~~v~~lL~lLl~~GadiN~~d~~G~TpLH~Aa~~g~~eivk~LL~~GA--d~n~~d~~~G~TpL~~A~~~ 108 (1071)
|..|+..+++-.++ .+..+|.++-.++.+.+|.||||+..|+-++|+|||++|. -+++.| +.|.|+||.|+-.
T Consensus 870 il~av~~~D~~klq----E~h~~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~d-e~get~lhkaa~~ 944 (1004)
T KOG0782|consen 870 ILRAVLSSDLMKLQ----ETHLNGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMAD-ETGETALHKAACQ 944 (1004)
T ss_pred HHHHHHhccHHHHH----HHHhcCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHh-hhhhHHHHHHHHh
Confidence 67788888766666 4556889998999999999999999999999999999995 367788 8899999999999
Q ss_pred ccccchhhhhccccccccccCCCCCCcc
Q 001480 109 GHLAVASVLLQSGASITLEDCKSRTPVD 136 (1071)
Q Consensus 109 g~~~vv~lLl~~Ga~v~l~d~~G~tpLd 136 (1071)
++..+..+|++.|+++...|..|.||-.
T Consensus 945 ~~r~vc~~lvdagasl~ktd~kg~tp~e 972 (1004)
T KOG0782|consen 945 RNRAVCQLLVDAGASLRKTDSKGKTPQE 972 (1004)
T ss_pred cchHHHHHHHhcchhheecccCCCChHH
Confidence 9999999999999999999999999853
No 117
>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]
Probab=97.80 E-value=1.5e-05 Score=82.10 Aligned_cols=66 Identities=33% Similarity=0.365 Sum_probs=62.9
Q ss_pred CCCCcccCCCCCcHHHHHHhcCCHHHHHHHHhcC-CCCCCCCCCCCccccccccccccccchhhhhcc
Q 001480 54 GGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAG-ADPDARDGESGWSSLHRALHFGHLAVASVLLQS 120 (1071)
Q Consensus 54 GadiN~~d~~G~TpLH~Aa~~g~~eivk~LL~~G-Ad~n~~d~~~G~TpL~~A~~~g~~~vv~lLl~~ 120 (1071)
+.|||.+|.+||||||.|++.|..+.|.+||.+| +.+...| ..|.+++.+|.+.|+.+++..|.++
T Consensus 2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d-~ssldaaqlaek~g~~~fvh~lfe~ 68 (223)
T KOG2384|consen 2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTD-ESSLDAAQLAEKGGAQAFVHSLFEN 68 (223)
T ss_pred CCCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccc-cccchHHHHHHhcChHHHHHHHHHH
Confidence 5789999999999999999999999999999999 8999999 8999999999999999999999876
No 118
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=97.80 E-value=3.3e-05 Score=90.24 Aligned_cols=82 Identities=24% Similarity=0.298 Sum_probs=68.4
Q ss_pred HHHHhCCCCccccCCccccCCCCCCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHH
Q 001480 3 ELLVSHHGQKQTLQSPARKSSLGGVQKDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRR 82 (1071)
Q Consensus 3 e~LL~~ga~~~~~~~~~~~~~~~~g~TpLh~Aa~~G~~~~v~~lL~lLl~~GadiN~~d~~G~TpLH~Aa~~g~~eivk~ 82 (1071)
-+||.||....-. ......+|.|+||+||+.|+....+ +|+-+|+|+-.+|..|+|+|.||-..|..+|+..
T Consensus 641 ~lLLAhg~~~e~~----~t~~~~~grt~LHLa~~~gnVvl~Q----LLiWyg~dv~~rda~g~t~l~yar~a~sqec~d~ 712 (749)
T KOG0705|consen 641 ILLLAHGSREEVN----ETCGEGDGRTALHLAARKGNVVLAQ----LLIWYGVDVMARDAHGRTALFYARQAGSQECIDV 712 (749)
T ss_pred HHHHhccCchhhh----ccccCCCCcchhhhhhhhcchhHHH----HHHHhCccceecccCCchhhhhHhhcccHHHHHH
Confidence 3677877654322 2233567899999999999998888 8999999999999999999999999999999999
Q ss_pred HHhcCCCCCC
Q 001480 83 LLAAGADPDA 92 (1071)
Q Consensus 83 LL~~GAd~n~ 92 (1071)
||.+|+-...
T Consensus 713 llq~gcp~e~ 722 (749)
T KOG0705|consen 713 LLQYGCPDEC 722 (749)
T ss_pred HHHcCCCccc
Confidence 9999976443
No 119
>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....
Probab=97.70 E-value=4.9e-05 Score=57.11 Aligned_cols=33 Identities=33% Similarity=0.417 Sum_probs=30.2
Q ss_pred CCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCC
Q 001480 26 GVQKDLCLAVREGSLADVESALALLKKNGGNINSRNI 62 (1071)
Q Consensus 26 ~g~TpLh~Aa~~G~~~~v~~lL~lLl~~GadiN~~d~ 62 (1071)
+|.||||+|+..|+.++++ +|+++|+++|.+|.
T Consensus 1 dG~TpLh~A~~~~~~~~v~----~Ll~~ga~~~~~d~ 33 (33)
T PF00023_consen 1 DGNTPLHYAAQRGHPDIVK----LLLKHGADINARDN 33 (33)
T ss_dssp TSBBHHHHHHHTTCHHHHH----HHHHTTSCTTCBCT
T ss_pred CcccHHHHHHHHHHHHHHH----HHHHCcCCCCCCCC
Confidence 4889999999999999999 88899999999873
No 120
>PF13606 Ank_3: Ankyrin repeat
Probab=97.68 E-value=4.5e-05 Score=56.32 Aligned_cols=30 Identities=27% Similarity=0.443 Sum_probs=27.4
Q ss_pred CCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcc
Q 001480 26 GVQKDLCLAVREGSLADVESALALLKKNGGNINS 59 (1071)
Q Consensus 26 ~g~TpLh~Aa~~G~~~~v~~lL~lLl~~GadiN~ 59 (1071)
+|+||||+||..|+.++++ +|+++|+|+|.
T Consensus 1 ~G~T~Lh~A~~~g~~e~v~----~Ll~~gadvn~ 30 (30)
T PF13606_consen 1 NGNTPLHLAASNGNIEIVK----YLLEHGADVNA 30 (30)
T ss_pred CCCCHHHHHHHhCCHHHHH----HHHHcCCCCCC
Confidence 4789999999999999999 88899999984
No 121
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=97.61 E-value=4.3e-05 Score=88.52 Aligned_cols=49 Identities=33% Similarity=0.476 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHhhhHHHHHHHHHHc
Q 001480 697 ISKQVRALRKKLQQIEMLEVKLSNGHILDEQQIAKLQTKSVLERSLAEL 745 (1071)
Q Consensus 697 ~~k~~r~l~kkl~~ie~l~~k~~~g~~l~~~q~~k~~~~~~~~~~l~~l 745 (1071)
.++|||+|.||||+||.|++++..||.|+..|+.||+++.+|.+||++|
T Consensus 510 ~e~ki~sl~~~lRaIe~lker~~~~eele~~qv~kietee~VlsElk~l 558 (561)
T COG5354 510 DEDKIRSLLKKLRAIEALKERMRSGEELEVIQVNKIETEEEVLSELKEL 558 (561)
T ss_pred HHHHHHHHHHHhhhhhcchhhcccccchhhhhhhhhhhHHHHHHHhhhc
Confidence 3449999999999999999999999999999999999999999999998
No 122
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=97.60 E-value=8.9e-05 Score=83.06 Aligned_cols=86 Identities=28% Similarity=0.315 Sum_probs=69.7
Q ss_pred chHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCccccccccc
Q 001480 28 QKDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRALH 107 (1071)
Q Consensus 28 ~TpLh~Aa~~G~~~~v~~lL~lLl~~GadiN~~d~~G~TpLH~Aa~~g~~eivk~LL~~GAd~n~~d~~~G~TpL~~A~~ 107 (1071)
.--|++||+.|+.+.|+ .|++.|++||.+|.+...||.+|+..||.++|++||++||-...-. ..|.-.+.-|.
T Consensus 37 f~elceacR~GD~d~v~----~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdt-f~G~RC~YgaL- 110 (516)
T KOG0511|consen 37 FGELCEACRAGDVDRVR----YLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDT-FDGDRCHYGAL- 110 (516)
T ss_pred hHHHHHHhhcccHHHHH----HHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccc-cCcchhhhhhh-
Confidence 44699999999999999 8888999999999999999999999999999999999998766544 66765543332
Q ss_pred cccccchhhhhccc
Q 001480 108 FGHLAVASVLLQSG 121 (1071)
Q Consensus 108 ~g~~~vv~lLl~~G 121 (1071)
+..+-+.|+.+.
T Consensus 111 --nd~IR~mllsyd 122 (516)
T KOG0511|consen 111 --NDRIRRMLLSYD 122 (516)
T ss_pred --hHHHHHHHHHHH
Confidence 234556666654
No 123
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=97.60 E-value=4.2e-05 Score=95.97 Aligned_cols=88 Identities=34% Similarity=0.383 Sum_probs=70.5
Q ss_pred CCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCccccccc
Q 001480 26 GVQKDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRA 105 (1071)
Q Consensus 26 ~g~TpLh~Aa~~G~~~~v~~lL~lLl~~GadiN~~d~~G~TpLH~Aa~~g~~eivk~LL~~GAd~n~~d~~~G~TpL~~A 105 (1071)
.|.|+||.|+..|..-.++ +|+++|+++|.+|..|+||||.+...|+...+.+|+++||++++.+ ..|.+||++|
T Consensus 655 ~~~s~lh~a~~~~~~~~~e----~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~-~~~~~~l~~a 729 (785)
T KOG0521|consen 655 IGCSLLHVAVGTGDSGAVE----LLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFD-PDGKLPLDIA 729 (785)
T ss_pred cccchhhhhhccchHHHHH----HHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccccccC-ccCcchhhHH
Confidence 4578888888888877777 7888888888888888888888888888888888888888888888 7788888888
Q ss_pred cccccccchhhhh
Q 001480 106 LHFGHLAVASVLL 118 (1071)
Q Consensus 106 ~~~g~~~vv~lLl 118 (1071)
....+.+++-+|.
T Consensus 730 ~~~~~~d~~~l~~ 742 (785)
T KOG0521|consen 730 MEAANADIVLLLR 742 (785)
T ss_pred hhhccccHHHHHh
Confidence 7666666665544
No 124
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=97.41 E-value=0.00011 Score=84.50 Aligned_cols=75 Identities=25% Similarity=0.291 Sum_probs=70.1
Q ss_pred CCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCccccccccccccccchhhhhcc-ccccccccCCCCCCccc
Q 001480 62 IFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRALHFGHLAVASVLLQS-GASITLEDCKSRTPVDL 137 (1071)
Q Consensus 62 ~~G~TpLH~Aa~~g~~eivk~LL~~GAd~n~~d~~~G~TpL~~A~~~g~~~vv~lLl~~-Ga~v~l~d~~G~tpLdl 137 (1071)
..+.-.+++|+..|.+..++.++-.|.|++.+| .+.+|+||+|+..|+.+++++|++. +.+++.+|..|++|+|=
T Consensus 504 ~~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~D-yD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDd 579 (622)
T KOG0506|consen 504 NDTVINVMYAAKNGDLSALRRFALQGMDLETKD-YDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDD 579 (622)
T ss_pred ccchhhhhhhhhcCCHHHHHHHHHhcccccccc-cccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchH
Confidence 446679999999999999999999999999999 8899999999999999999999986 78999999999999975
No 125
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=97.38 E-value=0.00012 Score=82.58 Aligned_cols=116 Identities=18% Similarity=0.180 Sum_probs=89.2
Q ss_pred CCCCCCCCCccccCCCcchhhhhh--hcccCCC--CCCCCCCcccc---cccccchhHHHHHHHHHHhhcCCCcccHHHH
Q 001480 505 PPNVAKNPQKLKLNGRNDLEEFYE--DFMFNDE--SNNMPSAIDKD---DSGVRLAPSLKSLCENVAAQCLVEPRNALQL 577 (1071)
Q Consensus 505 ~wG~~~~gq~g~~~~~~~i~el~e--dfmYtD~--~~~~~~~~~~~---aAd~y~~~~LK~lCE~~l~~~~v~~~nv~~i 577 (1071)
--||.+..|....-.....+.|.. .||||.. ....++++-.+ +|.+|+...|..-.-+-|++. +..+|||.|
T Consensus 75 YgGm~Es~q~~ipLq~t~~eAF~~lLrYiYtg~~~l~~~~ed~lld~LslAh~Ygf~~Le~aiSeYl~~i-L~~~NvCmi 153 (620)
T KOG4350|consen 75 YGGMQESHQQLIPLQETNSEAFRALLRYIYTGKIDLAGVEEDILLDYLSLAHRYGFIQLETAISEYLKEI-LKNENVCMI 153 (620)
T ss_pred hhhhhhhhhcccccccccHHHHHHHHHHHhhcceecccchHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-Hcccceeee
Confidence 346776655443333333334433 7999972 22222222222 899999999998887778886 999999999
Q ss_pred HHHHHhcCchhHHHHHHHHHHhhhhhhhhcccchhccccHHHHHHH
Q 001480 578 LEISDSLGADDLKKHCEDIAIRNLDYILTVSSHSFASASLDILADL 623 (1071)
Q Consensus 578 l~lA~~~~~~~Lk~~C~~f~~~nld~v~~~~~~~f~~l~~~~l~el 623 (1071)
++.|-.|+-.+|-.+|+-|+-+|.|.++ ..++|..|+.+-|+||
T Consensus 154 fdaA~ly~l~~Lt~~C~mfmDrnA~~lL--~~~sFn~LSk~sL~e~ 197 (620)
T KOG4350|consen 154 FDAAYLYQLTDLTDYCMMFMDRNADQLL--EDPSFNRLSKDSLKEL 197 (620)
T ss_pred eeHHHHhcchHHHHHHHHHHhcCHHhhh--cCcchhhhhHHHHHHH
Confidence 9999999999999999999999999999 9999999998888887
No 126
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.18 E-value=0.00042 Score=85.26 Aligned_cols=120 Identities=13% Similarity=0.238 Sum_probs=93.5
Q ss_pred CCccCCCCCCCCCccccCCCc--chhhhhhhcccCCCCCCCCCCcc--cccccccchhHHHHHHHHHHhhcCCCcccHHH
Q 001480 501 HPIYPPNVAKNPQKLKLNGRN--DLEEFYEDFMFNDESNNMPSAID--KDDSGVRLAPSLKSLCENVAAQCLVEPRNALQ 576 (1071)
Q Consensus 501 ~~v~~wG~~~~gq~g~~~~~~--~i~el~edfmYtD~~~~~~~~~~--~~aAd~y~~~~LK~lCE~~l~~~~v~~~nv~~ 576 (1071)
..+|+.++.+..+........ +.-+...+|+||..+.-..+.++ ..+|+.+.++.+...|-+-|.+. ++++|...
T Consensus 63 raMFt~~l~e~~~~~i~l~~v~~~~l~~ll~y~Yt~~i~i~~~nVq~ll~aA~~lQi~~v~~~C~~fL~~~-l~~~Nclg 141 (571)
T KOG4441|consen 63 RAMFTSGLKESKQKEINLEGVDPETLELLLDYAYTGKLEISEDNVQELLEAASLLQIPEVVDACCEFLESQ-LDPSNCLG 141 (571)
T ss_pred HHHhcCCcccccceEEEEecCCHHHHHHHHHHhhcceEEechHhHHHHHHHHHHhhhHHHHHHHHHHHHhc-CCHHHHHH
Confidence 446777888777764333332 33334458999984321111111 12899999999999999999998 99999999
Q ss_pred HHHHHHhcCchhHHHHHHHHHHhhhhhhhhcccchhccccHHHHHHH
Q 001480 577 LLEISDSLGADDLKKHCEDIAIRNLDYILTVSSHSFASASLDILADL 623 (1071)
Q Consensus 577 il~lA~~~~~~~Lk~~C~~f~~~nld~v~~~~~~~f~~l~~~~l~el 623 (1071)
|..+|+.|+|.+|.+....|+.+||..|. .++.|..|+.+-+.+|
T Consensus 142 i~~~a~~~~~~~L~~~a~~~i~~~F~~v~--~~eefl~L~~~~l~~l 186 (571)
T KOG4441|consen 142 IRRFAELHSCTELLEVADEYILQHFAEVS--KTEEFLLLSLEELIGL 186 (571)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHHHh--ccHHhhCCCHHHHHhh
Confidence 99999999999999999999999999999 9999999998665555
No 127
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=97.11 E-value=0.00032 Score=88.29 Aligned_cols=88 Identities=32% Similarity=0.391 Sum_probs=79.4
Q ss_pred hCCCCCcccC--CCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCccccccccccccccchhhhhccccccccccC
Q 001480 52 KNGGNINSRN--IFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRALHFGHLAVASVLLQSGASITLEDC 129 (1071)
Q Consensus 52 ~~GadiN~~d--~~G~TpLH~Aa~~g~~eivk~LL~~GAd~n~~d~~~G~TpL~~A~~~g~~~vv~lLl~~Ga~v~l~d~ 129 (1071)
.+++++|..+ ..|.|+||.|+.++..-++++||++|+++|..| ..|+||||.+...|+...+.+|++.|++.++.+.
T Consensus 642 ~~~~~~n~~~~~~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d-~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~ 720 (785)
T KOG0521|consen 642 AHGCCENWPVVLCIGCSLLHVAVGTGDSGAVELLLQNGADVNALD-SKGRTPLHHATASGHTSIACLLLKRGADPNAFDP 720 (785)
T ss_pred cchhhhccchhhhcccchhhhhhccchHHHHHHHHhcCCcchhhh-ccCCCcchhhhhhcccchhhhhccccccccccCc
Confidence 3556666533 668999999999999999999999999999999 8899999999999999999999999999999999
Q ss_pred CCCCCcccCCC
Q 001480 130 KSRTPVDLLSG 140 (1071)
Q Consensus 130 ~G~tpLdl~sg 140 (1071)
+|..+++.+.-
T Consensus 721 ~~~~~l~~a~~ 731 (785)
T KOG0521|consen 721 DGKLPLDIAME 731 (785)
T ss_pred cCcchhhHHhh
Confidence 99999988644
No 128
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.08 E-value=0.00038 Score=85.57 Aligned_cols=116 Identities=22% Similarity=0.234 Sum_probs=91.9
Q ss_pred CCCCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCC-------------
Q 001480 24 LGGVQKDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADP------------- 90 (1071)
Q Consensus 24 ~~~g~TpLh~Aa~~G~~~~v~~lL~lLl~~GadiN~~d~~G~TpLH~Aa~~g~~eivk~LL~~GAd~------------- 90 (1071)
...+......|+..|+.-.|+++++.-.....|+|++|..|+++||+|..+.+.+++++|+++....
T Consensus 22 l~~~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~gdALL~aI~~~~v 101 (822)
T KOG3609|consen 22 LNEGEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEEGDALLLAIAVGSV 101 (822)
T ss_pred cchhhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCccccchHHHHHHHHHHH
Confidence 3456677899999999999998777544444789999999999999999999999999999874211
Q ss_pred ----------------------CCCCCCCCccccccccccccccchhhhhccccccccccCCCCCCcccCC
Q 001480 91 ----------------------DARDGESGWSSLHRALHFGHLAVASVLLQSGASITLEDCKSRTPVDLLS 139 (1071)
Q Consensus 91 ----------------------n~~d~~~G~TpL~~A~~~g~~~vv~lLl~~Ga~v~l~d~~G~tpLdl~s 139 (1071)
+...-..+.|||.+|++.++.+|+++|+..|+.+.......+.+.++..
T Consensus 102 ~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~PH~~~C~C~~C~~ 172 (822)
T KOG3609|consen 102 PLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPIPHDIRCECKTCKR 172 (822)
T ss_pred HHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCCCcccccCchHhhh
Confidence 1111135779999999999999999999999998876666666666544
No 129
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=97.05 E-value=0.00035 Score=78.43 Aligned_cols=69 Identities=28% Similarity=0.269 Sum_probs=61.5
Q ss_pred CcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCccccccccccccccchhhhhccccccccccCCCCCC
Q 001480 65 LTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRALHFGHLAVASVLLQSGASITLEDCKSRTP 134 (1071)
Q Consensus 65 ~TpLH~Aa~~g~~eivk~LL~~GAd~n~~d~~~G~TpL~~A~~~g~~~vv~lLl~~Ga~v~l~d~~G~tp 134 (1071)
.--|..||+.|..+.|++|++.|.++|.+| ....+||.+|+..||.+++++|+++||.+......|-.+
T Consensus 37 f~elceacR~GD~d~v~~LVetgvnVN~vD-~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~RC 105 (516)
T KOG0511|consen 37 FGELCEACRAGDVDRVRYLVETGVNVNAVD-RFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDRC 105 (516)
T ss_pred hHHHHHHhhcccHHHHHHHHHhCCCcchhh-cccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcchh
Confidence 336999999999999999999999999999 889999999999999999999999999887655555443
No 130
>KOG0522 consensus Ankyrin repeat protein [General function prediction only]
Probab=96.95 E-value=0.0013 Score=77.30 Aligned_cols=58 Identities=28% Similarity=0.409 Sum_probs=53.7
Q ss_pred CCCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHhc
Q 001480 25 GGVQKDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAA 86 (1071)
Q Consensus 25 ~~g~TpLh~Aa~~G~~~~v~~lL~lLl~~GadiN~~d~~G~TpLH~Aa~~g~~eivk~LL~~ 86 (1071)
..|.||||+|++.|+...++ +|+.+|+++-.+|..|++|||-|+.+|+.+++..+|.+
T Consensus 53 ~~g~TpLhlAV~Lg~~~~a~----~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~q~i~~vlr~ 110 (560)
T KOG0522|consen 53 PPGRTPLHLAVRLGHVEAAR----ILLSAGADVSIKNNEGWSPLHEAVSTGNEQIITEVLRH 110 (560)
T ss_pred CCCCccHHHHHHhcCHHHHH----HHHhcCCCccccccccccHHHHHHHcCCHHHHHHHHHH
Confidence 45689999999999999999 89999999999999999999999999999998888765
No 131
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=96.82 E-value=0.0014 Score=68.15 Aligned_cols=90 Identities=19% Similarity=0.214 Sum_probs=74.4
Q ss_pred hcccCCCCCCCCCCc----ccccccccchhHHHHHHHHHHhhcCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhhhhhh
Q 001480 529 DFMFNDESNNMPSAI----DKDDSGVRLAPSLKSLCENVAAQCLVEPRNALQLLEISDSLGADDLKKHCEDIAIRNLDYI 604 (1071)
Q Consensus 529 dfmYtD~~~~~~~~~----~~~aAd~y~~~~LK~lCE~~l~~~~v~~~nv~~il~lA~~~~~~~Lk~~C~~f~~~nld~v 604 (1071)
..||||..+-...++ ....|.||.++-||..||.-+-.. +.|+|.+.+.++|+..++..|..+|.++|....|..
T Consensus 123 RWIYTDEidfk~dD~~L~el~e~An~FqLe~Lke~C~k~l~a~-l~V~NCIk~Ye~AEe~n~~qL~n~~~eiIA~~W~dL 201 (280)
T KOG4591|consen 123 RWIYTDEIDFKEDDEFLLELCELANRFQLELLKERCEKGLGAL-LHVDNCIKFYEFAEELNARQLMNVAAEIIAGAWDDL 201 (280)
T ss_pred eeeeccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhH-hhHhhHHHHHHHHHHhhHHHHHHHHHHHHHhhcccc
Confidence 689999654322221 112899999999999999999886 999999999999999999999999999999888876
Q ss_pred hhcccchhccccHHHHHH
Q 001480 605 LTVSSHSFASASLDILAD 622 (1071)
Q Consensus 605 ~~~~~~~f~~l~~~~l~e 622 (1071)
- ...|..+++.+|--
T Consensus 202 ~---~a~FaqMs~aLLYk 216 (280)
T KOG4591|consen 202 G---KADFAQMSAALLYK 216 (280)
T ss_pred C---hHHHHhccHHHHHH
Confidence 6 77899999865443
No 132
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=96.59 E-value=0.001 Score=83.47 Aligned_cols=95 Identities=21% Similarity=0.094 Sum_probs=77.2
Q ss_pred CCCchHHHHHHHcCCHHHHHHHHHHHHhC-CCCCcccCCCCCcHHHHHHhcCCHHHHHHHH-hcCCCCCCCCCCCCcccc
Q 001480 25 GGVQKDLCLAVREGSLADVESALALLKKN-GGNINSRNIFGLTPLHSAIWRNQVPIVRRLL-AAGADPDARDGESGWSSL 102 (1071)
Q Consensus 25 ~~g~TpLh~Aa~~G~~~~v~~lL~lLl~~-GadiN~~d~~G~TpLH~Aa~~g~~eivk~LL-~~GAd~n~~d~~~G~TpL 102 (1071)
-.|+|-||+++..+..-.++ .+++- |-..+..|..|.--+|+ |..+++++.-+|+ .+|..++.+| ..|||||
T Consensus 572 ~r~~lllhL~a~~lyawLie----~~~e~~~~~~~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D-~~G~tpL 645 (975)
T KOG0520|consen 572 FRDMLLLHLLAELLYAWLIE----KVIEWAGSGDLELDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRD-RNGWTPL 645 (975)
T ss_pred CcchHHHHHHHHHhHHHHHH----HHhcccccCchhhcccCCChhhH-hhhcCCceeEEEEeeccccccccc-CCCCccc
Confidence 45789999999999877777 44443 66666677777778888 6667777777665 5689999999 8999999
Q ss_pred ccccccccccchhhhhccccccc
Q 001480 103 HRALHFGHLAVASVLLQSGASIT 125 (1071)
Q Consensus 103 ~~A~~~g~~~vv~lLl~~Ga~v~ 125 (1071)
|+|+.+|+..++..|+..|++..
T Consensus 646 ~wAa~~G~e~l~a~l~~lga~~~ 668 (975)
T KOG0520|consen 646 HWAAFRGREKLVASLIELGADPG 668 (975)
T ss_pred chHhhcCHHHHHHHHHHhccccc
Confidence 99999999999999998877655
No 133
>KOG2505 consensus Ankyrin repeat protein [General function prediction only]
Probab=96.21 E-value=0.0056 Score=71.33 Aligned_cols=69 Identities=25% Similarity=0.297 Sum_probs=57.6
Q ss_pred HHHHHHhCCCCCccc------CCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCccccccccccccccchhhhh
Q 001480 46 ALALLKKNGGNINSR------NIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRALHFGHLAVASVLL 118 (1071)
Q Consensus 46 lL~lLl~~GadiN~~------d~~G~TpLH~Aa~~g~~eivk~LL~~GAd~n~~d~~~G~TpL~~A~~~g~~~vv~lLl 118 (1071)
.|++|.+++++.|.+ +..-.|+||||+..|...+|.+||+.|+|+.++| ..|+||..++. +.+|-..++
T Consensus 406 ~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd-~~Grtpy~ls~---nkdVk~~F~ 480 (591)
T KOG2505|consen 406 SIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKD-GAGRTPYSLSA---NKDVKSIFI 480 (591)
T ss_pred HHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcc-cCCCCcccccc---cHHHHHHHH
Confidence 344888999888754 3446799999999999999999999999999999 88999999987 566665555
No 134
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=95.96 E-value=0.013 Score=55.00 Aligned_cols=49 Identities=18% Similarity=0.443 Sum_probs=43.0
Q ss_pred HHHHHHHHHhcCchhHHHHHHHHHHhhhhhhhhcccchhccccHHHHHHHH
Q 001480 574 ALQLLEISDSLGADDLKKHCEDIAIRNLDYILTVSSHSFASASLDILADLE 624 (1071)
Q Consensus 574 v~~il~lA~~~~~~~Lk~~C~~f~~~nld~v~~~~~~~f~~l~~~~l~el~ 624 (1071)
.+.++.+|+.|++..|.++|.+|+..|+..|+ .++.|.+|+.+.+.+|.
T Consensus 1 C~~i~~~A~~~~~~~L~~~~~~~i~~nf~~v~--~~~~f~~L~~~~l~~iL 49 (103)
T PF07707_consen 1 CLSIYRLAEKYGLEELAEACLRFIAKNFNEVS--KSDEFLELPFDQLIEIL 49 (103)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTHHHHT--TSHHHHCS-HHHHHHHH
T ss_pred ChhHHHHHHHcChHHHHHHHHHHHHHHHHHHc--cchhhhcCCHHHHHHHH
Confidence 36789999999999999999999999999999 89999999998877773
No 135
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=95.83 E-value=0.0035 Score=78.87 Aligned_cols=91 Identities=27% Similarity=0.319 Sum_probs=71.5
Q ss_pred CCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCC-----CCCCCcc
Q 001480 26 GVQKDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDAR-----DGESGWS 100 (1071)
Q Consensus 26 ~g~TpLh~Aa~~G~~~~v~~lL~lLl~~GadiN~~d~~G~TpLH~Aa~~g~~eivk~LL~~GAd~n~~-----d~~~G~T 100 (1071)
+|.-.+|++|..|. +.+- .+++-+|..++.+|..|+||||||+.+|+..++..|++.|++.... +...|.|
T Consensus 607 d~qgV~hfca~lg~-ewA~---ll~~~~~~ai~i~D~~G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~t 682 (975)
T KOG0520|consen 607 DGQGVIHFCAALGY-EWAF---LPISADGVAIDIRDRNGWTPLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKT 682 (975)
T ss_pred cCCChhhHhhhcCC-ceeE---EEEeecccccccccCCCCcccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCc
Confidence 34445788665554 4333 1455689999999999999999999999999999999888665432 1146899
Q ss_pred ccccccccccccchhhhhcc
Q 001480 101 SLHRALHFGHLAVASVLLQS 120 (1071)
Q Consensus 101 pL~~A~~~g~~~vv~lLl~~ 120 (1071)
+..+|...|+..+..+|-+.
T Consensus 683 a~~la~s~g~~gia~~lse~ 702 (975)
T KOG0520|consen 683 AADLARANGHKGIAGYLSEK 702 (975)
T ss_pred hhhhhhcccccchHHHHhhh
Confidence 99999999999999998876
No 136
>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]
Probab=95.77 E-value=0.021 Score=59.47 Aligned_cols=67 Identities=18% Similarity=0.051 Sum_probs=59.9
Q ss_pred CCCCchHHHHHHHcCCHHHHHHHHHHHHhCC-CCCcccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCC
Q 001480 24 LGGVQKDLCLAVREGSLADVESALALLKKNG-GNINSRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARD 94 (1071)
Q Consensus 24 ~~~g~TpLh~Aa~~G~~~~v~~lL~lLl~~G-adiN~~d~~G~TpLH~Aa~~g~~eivk~LL~~GAd~n~~d 94 (1071)
+.-|||+|+.|++.|+.+.+. +|+.+| +.+-.+|..|.+++.+|-..|+.++++.|.++-.+-...+
T Consensus 9 D~fgWTalmcaa~eg~~eavs----yllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~ets~p~ 76 (223)
T KOG2384|consen 9 DAFGWTALMCAAMEGSNEAVS----YLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRETSHPM 76 (223)
T ss_pred hhhcchHHHHHhhhcchhHHH----HHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhccCCCcc
Confidence 346899999999999999999 888999 8999999999999999999999999999999866555544
No 137
>smart00248 ANK ankyrin repeats. Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.
Probab=95.62 E-value=0.018 Score=39.32 Aligned_cols=29 Identities=41% Similarity=0.524 Sum_probs=23.3
Q ss_pred CCCcHHHHHHhcCCHHHHHHHHhcCCCCC
Q 001480 63 FGLTPLHSAIWRNQVPIVRRLLAAGADPD 91 (1071)
Q Consensus 63 ~G~TpLH~Aa~~g~~eivk~LL~~GAd~n 91 (1071)
.|.||||+|+..++.+++++|+++|.+++
T Consensus 1 ~~~~~l~~~~~~~~~~~~~~ll~~~~~~~ 29 (30)
T smart00248 1 DGRTPLHLAAENGNLEVVKLLLDKGADIN 29 (30)
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence 36788888888888888888888887664
No 138
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=95.15 E-value=0.03 Score=51.93 Aligned_cols=47 Identities=21% Similarity=0.338 Sum_probs=42.8
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHHhhhhhhhhcccchhccccHHHHHHH
Q 001480 575 LQLLEISDSLGADDLKKHCEDIAIRNLDYILTVSSHSFASASLDILADL 623 (1071)
Q Consensus 575 ~~il~lA~~~~~~~Lk~~C~~f~~~nld~v~~~~~~~f~~l~~~~l~el 623 (1071)
+.++.+|+.|++..|++.|.+|+..|+..++ .++.|..|+.+.+.+|
T Consensus 2 ~~i~~~a~~~~~~~L~~~~~~~i~~nf~~~~--~~~~f~~L~~~~l~~i 48 (101)
T smart00875 2 LGIRRFAELYGLEELLEKALRFILKNFLEVA--QSEEFLELSLEQLLSL 48 (101)
T ss_pred HhHHHHHHHhChHHHHHHHHHHHHHHHHHHh--cCcHHhcCCHHHHHHH
Confidence 4688899999999999999999999999998 7899999998877766
No 139
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=94.23 E-value=8.3 Score=46.75 Aligned_cols=108 Identities=19% Similarity=0.238 Sum_probs=72.4
Q ss_pred cCCceEEEEecCCcEEEEecCCCCCCCCCCCccCCCCcceeeeeeeecCCCCCCEEEEEecC-ceEEEEEcCCcEE-EEe
Q 001480 195 AAKFHSVAVTSLGEVYTWGYGRGGRLGHPDFDIHSGQAAVITPRRVTSGLGSRRVKTIAAAK-HHTVLATEGGEVF-TWG 272 (1071)
Q Consensus 195 ~G~~HslaLT~dG~Vy~WG~N~~GQLG~g~~~~~s~~~~v~~P~~V~~~l~~~~Iv~IAcG~-~HslaLT~dG~Vy-swG 272 (1071)
.|.....+|+++|++|.= -|...... .+..- ..|. ....+.+|++|- .-..+++.+|.|| --|
T Consensus 190 ~g~~~awAI~s~Gd~y~R-------tGvs~~~P-~GraW----~~i~---~~t~L~qISagPtg~VwAvt~nG~vf~R~G 254 (705)
T KOG3669|consen 190 LGDDTAWAIRSSGDLYLR-------TGVSVDRP-CGRAW----KVIC---PYTDLSQISAGPTGVVWAVTENGAVFYREG 254 (705)
T ss_pred CCceEEEEEecCCcEEEe-------ccccCCCC-CCcee----eecC---CCCccceEeecCcceEEEEeeCCcEEEEec
Confidence 567777889999998862 22221100 00000 1111 122688999999 7788999999975 568
Q ss_pred CCCCCCcCCCCCCCCCcceeeccCcccEEEEEEcCCceeEEecCCcEEEE
Q 001480 273 SNREGQLGYTSVDTQPTPRRVSSLKLKIIAVAAANKHTAVVSESGEVFTW 322 (1071)
Q Consensus 273 ~N~~GQLG~g~~~~~~~P~~V~~l~~~Iv~VacG~~HSlaLT~dG~VY~W 322 (1071)
-.++.+.|.. -....+|+... .++.|+.|....-+||.+|.+|.-
T Consensus 255 VsRqNp~Gds-WkdI~tP~~a~----~~v~iSvGt~t~Waldndg~lwfr 299 (705)
T KOG3669|consen 255 VSRQNPEGDS-WKDIVTPRQAL----EPVCISVGTQTLWALDNDGNLWFR 299 (705)
T ss_pred ccccCCCCch-hhhccCccccc----ceEEEEeccceEEEEecCCcEEEE
Confidence 7777777754 23555565543 389999999999999999999864
No 140
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=94.06 E-value=0.31 Score=64.65 Aligned_cols=280 Identities=14% Similarity=0.164 Sum_probs=148.6
Q ss_pred eEEEEecCCceEEEEecCCcEEEEecCCCCCCCCCCCccCCCCcceeeeeee--------------ecCCCC-----CCE
Q 001480 189 VIKLISAAKFHSVAVTSLGEVYTWGYGRGGRLGHPDFDIHSGQAAVITPRRV--------------TSGLGS-----RRV 249 (1071)
Q Consensus 189 ~I~~Va~G~~HslaLT~dG~Vy~WG~N~~GQLG~g~~~~~s~~~~v~~P~~V--------------~~~l~~-----~~I 249 (1071)
..+.|.....+-++.+.+|+||.--....+ .+. ......|... ...+.+ .-+
T Consensus 490 ~A~~VgLs~drLFvADseGkLYsa~l~~~~---~~~------~~l~~~p~~~~~~~~~~~G~~~~VtGF~~gd~G~lhAl 560 (1774)
T PF11725_consen 490 QAQSVGLSNDRLFVADSEGKLYSADLPAAQ---DNE------PKLKLMPEPAYQLLGSALGGDHKVTGFISGDDGQLHAL 560 (1774)
T ss_pred hhhheeecCCeEEEEeCCCCEEeccccccc---CCC------cceEeccccccccccccccccceeeccccCCCCeeeEE
Confidence 567777778888999999999985433221 110 0111112111 101111 112
Q ss_pred EEEEecCceEEEEEcCCcEEEEeCCCCCCcCCCCCCC-----CCcceeeccCcccEEEEEEcCCceeEEecCCcEEEEeC
Q 001480 250 KTIAAAKHHTVLATEGGEVFTWGSNREGQLGYTSVDT-----QPTPRRVSSLKLKIIAVAAANKHTAVVSESGEVFTWGC 324 (1071)
Q Consensus 250 v~IAcG~~HslaLT~dG~VyswG~N~~GQLG~g~~~~-----~~~P~~V~~l~~~Iv~VacG~~HSlaLT~dG~VY~WG~ 324 (1071)
+.=..|..|+++|.++|.=|.=|||-.-.|=+.+... .+.|..+ +-.|..-.++|. +|+|+.|-.
T Consensus 561 ikd~~GQ~Hs~aLde~~~~~~pGWNLSd~Lvl~N~~GL~~~~~p~~~~~---------ldl~r~G~v~L~-~G~i~~wD~ 630 (1774)
T PF11725_consen 561 IKDRQGQRHSHALDEQGSQLQPGWNLSDALVLDNTRGLPKPPAPAPHEI---------LDLGRAGLVGLQ-DGKIQYWDS 630 (1774)
T ss_pred EeccCCceeeccccccCCccCCCCcccceeEeeccCCCCCCCCCChHHh---------hccccccceeec-cceEeeecC
Confidence 3334577788888777777777777644442222111 2222222 223455667777 499999954
Q ss_pred CCCC----------CcCCCCCCCCCcccceeeeccC-CCCEEEEEecCCeEEEEeeCCcEEEEecCCCCCCCccceeccc
Q 001480 325 NREG----------QLGYGTSNSASNYTPRVVESLK-GKDLVGVAAAKYHTIVLGADGERVIVARNLKKSGSTPLKFHRK 393 (1071)
Q Consensus 325 N~~G----------QLG~g~~~~~~~~~P~~V~~l~-~~~I~~IaaG~~htlaLt~dG~Vy~wG~n~~~~~~~p~~~~~~ 393 (1071)
...+ ||-.|......+..--.|.-+. ...--.|+.|.++.++++.--.-+..|.. +.-+
T Consensus 631 ttq~W~~~~~kd~~~L~RG~D~~AYVLk~G~vk~l~i~~~~~~~~~g~~~~~a~~~~r~~~e~G~~----------l~Gl 700 (1774)
T PF11725_consen 631 TTQCWKDAGVKDIDQLKRGLDGNAYVLKDGKVKRLSINQEHPSIAHGDNNVFALPQRRNKVELGDA----------LEGL 700 (1774)
T ss_pred cchhhhhccCcCHHHHhccccCCceEecCCceeeeecccCCCccccCCCcccccccccCCCCCCcc----------ccCC
Confidence 3221 2222222221111111111000 00112233444444444322222222221 1122
Q ss_pred cCCcEEEEE-eCCCcceEEecCCcEEEEeCCCCCCceeee--eecCCceeEEEEeCCcEE-EEEeeCCcEEE-----ecC
Q 001480 394 IKLHVVSIA-AGMVHSTALTEDGALFYWASSDPDLRCQQL--YSMCGRNVVSISAGKYWT-AAVTATGDVYM-----WDG 464 (1071)
Q Consensus 394 ~~~~I~~Ia-~G~~hslaLt~dG~Vy~WG~n~~~~~p~~v--~~l~g~~Vv~IaaG~~ht-laLT~dG~Vy~-----WG~ 464 (1071)
....|..++ .+.++.++|++.|++-..- .... |..+ ..+. ..|..|++-..|. +|+|.+|++|. |=.
T Consensus 701 ~~~~i~a~Avv~~~~fvald~qg~lt~h~-k~g~--p~~l~~~gl~-G~ik~l~lD~~~nL~Alt~~G~Lf~~~k~~WQ~ 776 (1774)
T PF11725_consen 701 EDRVITAFAVVNDNKFVALDDQGDLTAHQ-KPGR--PVPLSRPGLS-GEIKDLALDEKQNLYALTSTGELFRLPKEAWQG 776 (1774)
T ss_pred CcCcceeEEEEcCCceEEeccCCcccccc-CCCC--CccCCCCCCC-cchhheeeccccceeEecCCCceeecCHHHhhC
Confidence 233455554 3678899999999887655 2211 3333 2343 4699999988755 56999999998 545
Q ss_pred CCCC---CCCCceEEecCcccEEEEEecCCeEEEEEeCCC
Q 001480 465 KKSK---DNPPLVTRLHGIKKATSVSVGETHLLIVGSLYH 501 (1071)
Q Consensus 465 N~~~---~~~~~p~~v~g~~~V~~Va~G~~HtlaL~s~~~ 501 (1071)
+... .....|+.+++...|..+....+|.+.+.-.++
T Consensus 777 ~~~~~~~~~~W~~v~lP~~~~v~~l~~~~~~~l~~~~~d~ 816 (1774)
T PF11725_consen 777 NAEGDQMAAKWQKVALPDEQPVKSLRTNDDNHLSAQIEDG 816 (1774)
T ss_pred cccCCccccCceeccCCCCCchhhhhcCCCCceEEEecCC
Confidence 5433 244567777777789999999999999987764
No 141
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=93.13 E-value=1.1 Score=59.66 Aligned_cols=294 Identities=15% Similarity=0.141 Sum_probs=151.2
Q ss_pred ceEEEEecCCceEEEE--------ecCCcE-EEEecCCCC-CCCCCCCccCCCCcceeeee---eeecCCCCCCEEEEEe
Q 001480 188 FVIKLISAAKFHSVAV--------TSLGEV-YTWGYGRGG-RLGHPDFDIHSGQAAVITPR---RVTSGLGSRRVKTIAA 254 (1071)
Q Consensus 188 ~~I~~Va~G~~HslaL--------T~dG~V-y~WG~N~~G-QLG~g~~~~~s~~~~v~~P~---~V~~~l~~~~Iv~IAc 254 (1071)
..++.++++..+...+ ..+|+| ..-|....+ ||+..... .....|. .+...-+......|..
T Consensus 422 ~~l~nLSs~~~~~~~v~~l~sfSv~~~g~vA~L~~~d~q~~qL~~m~~~-----~a~~~p~~~~~L~L~dG~a~A~~VgL 496 (1774)
T PF11725_consen 422 DTLVNLSSGQMSEAEVDKLKSFSVAPDGTVAMLTGKDGQTLQLHDMSPV-----DAPPTPRKTKTLQLADGKAQAQSVGL 496 (1774)
T ss_pred CceeecCCCCcchhhhhhcccccccCCCceeeeecCCCcceeeeccCcc-----ccccCccceeeeeccCCchhhhheee
Confidence 4566666665544443 456665 444544444 55554321 1122231 1111112336778888
Q ss_pred cCceEEEEEcCCcEEEEeCCCCCCcCCCCCCCCCcce--------------eeccCc----c---cEEEEEEcCCceeEE
Q 001480 255 AKHHTVLATEGGEVFTWGSNREGQLGYTSVDTQPTPR--------------RVSSLK----L---KIIAVAAANKHTAVV 313 (1071)
Q Consensus 255 G~~HslaLT~dG~VyswG~N~~GQLG~g~~~~~~~P~--------------~V~~l~----~---~Iv~VacG~~HSlaL 313 (1071)
..++-++.+.+|+||+--....+ .+...-...|. .|.+|- . -++.=..|..|+++|
T Consensus 497 s~drLFvADseGkLYsa~l~~~~---~~~~~l~~~p~~~~~~~~~~~G~~~~VtGF~~gd~G~lhAlikd~~GQ~Hs~aL 573 (1774)
T PF11725_consen 497 SNDRLFVADSEGKLYSADLPAAQ---DNEPKLKLMPEPAYQLLGSALGGDHKVTGFISGDDGQLHALIKDRQGQRHSHAL 573 (1774)
T ss_pred cCCeEEEEeCCCCEEeccccccc---CCCcceEeccccccccccccccccceeeccccCCCCeeeEEEeccCCceeeccc
Confidence 88899999999999974332211 11111111111 222221 1 234446788899999
Q ss_pred ecCCcEEEEeCCCCCCcCCCCCCCC---CcccceeeeccCCCCEEEEEecCCeEEEEeeCCcEEEEecCCCCCCCccc-e
Q 001480 314 SESGEVFTWGCNREGQLGYGTSNSA---SNYTPRVVESLKGKDLVGVAAAKYHTIVLGADGERVIVARNLKKSGSTPL-K 389 (1071)
Q Consensus 314 T~dG~VY~WG~N~~GQLG~g~~~~~---~~~~P~~V~~l~~~~I~~IaaG~~htlaLt~dG~Vy~wG~n~~~~~~~p~-~ 389 (1071)
.++|.=|-=|||-.-.|=+.+..-- ....|..+.. -|..-.+.|. +|+|+.|-.........-+ .
T Consensus 574 de~~~~~~pGWNLSd~Lvl~N~~GL~~~~~p~~~~~ld----------l~r~G~v~L~-~G~i~~wD~ttq~W~~~~~kd 642 (1774)
T PF11725_consen 574 DEQGSQLQPGWNLSDALVLDNTRGLPKPPAPAPHEILD----------LGRAGLVGLQ-DGKIQYWDSTTQCWKDAGVKD 642 (1774)
T ss_pred cccCCccCCCCcccceeEeeccCCCCCCCCCChHHhhc----------cccccceeec-cceEeeecCcchhhhhccCcC
Confidence 9888888888885544432221110 0112222222 2444556674 6999998755322111111 0
Q ss_pred ecc-----------ccCCcE---------EEEEeCCCcceEEecCCcEEEEeCCCCCCceeeeeecCCceeEEEE-eCCc
Q 001480 390 FHR-----------KIKLHV---------VSIAAGMVHSTALTEDGALFYWASSDPDLRCQQLYSMCGRNVVSIS-AGKY 448 (1071)
Q Consensus 390 ~~~-----------~~~~~I---------~~Ia~G~~hslaLt~dG~Vy~WG~n~~~~~p~~v~~l~g~~Vv~Ia-aG~~ 448 (1071)
+.. +.+-+| -.|+-|.+|.++++.--.-+..| ..+..+.+..|..++ .+.+
T Consensus 643 ~~~L~RG~D~~AYVLk~G~vk~l~i~~~~~~~~~g~~~~~a~~~~r~~~e~G--------~~l~Gl~~~~i~a~Avv~~~ 714 (1774)
T PF11725_consen 643 IDQLKRGLDGNAYVLKDGKVKRLSINQEHPSIAHGDNNVFALPQRRNKVELG--------DALEGLEDRVITAFAVVNDN 714 (1774)
T ss_pred HHHHhccccCCceEecCCceeeeecccCCCccccCCCcccccccccCCCCCC--------ccccCCCcCcceeEEEEcCC
Confidence 000 000011 12333444444443322222222 123445556677666 4778
Q ss_pred EEEEEeeCCcEEEecCCCCCCCCCceEEecCc-ccEEEEEecCCeEEEEEeCCCCcc-----CCCCCCCC
Q 001480 449 WTAAVTATGDVYMWDGKKSKDNPPLVTRLHGI-KKATSVSVGETHLLIVGSLYHPIY-----PPNVAKNP 512 (1071)
Q Consensus 449 htlaLT~dG~Vy~WG~N~~~~~~~~p~~v~g~-~~V~~Va~G~~HtlaL~s~~~~v~-----~wG~~~~g 512 (1071)
+.+++++.|++-..- ..+. |.+..-+++ -.|.++++-..|.+.-....|..| .|--+..+
T Consensus 715 ~fvald~qg~lt~h~--k~g~--p~~l~~~gl~G~ik~l~lD~~~nL~Alt~~G~Lf~~~k~~WQ~~~~~ 780 (1774)
T PF11725_consen 715 KFVALDDQGDLTAHQ--KPGR--PVPLSRPGLSGEIKDLALDEKQNLYALTSTGELFRLPKEAWQGNAEG 780 (1774)
T ss_pred ceEEeccCCcccccc--CCCC--CccCCCCCCCcchhheeeccccceeEecCCCceeecCHHHhhCcccC
Confidence 999999999988765 2222 333333333 379999999999987776668888 46544444
No 142
>KOG2505 consensus Ankyrin repeat protein [General function prediction only]
Probab=92.76 E-value=0.18 Score=59.42 Aligned_cols=65 Identities=15% Similarity=0.056 Sum_probs=48.9
Q ss_pred HHHHHhCCCCccccCCccccCCCCCCchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHH
Q 001480 2 TELLVSHHGQKQTLQSPARKSSLGGVQKDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAI 72 (1071)
Q Consensus 2 ve~LL~~ga~~~~~~~~~~~~~~~~g~TpLh~Aa~~G~~~~v~~lL~lLl~~GadiN~~d~~G~TpLH~Aa 72 (1071)
+++|.+++...+-..- ......--.|+||||+..|+..+|. +||+.|+|+..+|..|+||..+++
T Consensus 407 ie~lken~lsgnf~~~--pe~~~~ltsT~LH~aa~qg~~k~v~----~~Leeg~Dp~~kd~~Grtpy~ls~ 471 (591)
T KOG2505|consen 407 IEALKENLLSGNFDVT--PEANDYLTSTFLHYAAAQGARKCVK----YFLEEGCDPSTKDGAGRTPYSLSA 471 (591)
T ss_pred HHHHHhcCCccccccc--ccccccccchHHHHHHhcchHHHHH----HHHHhcCCchhcccCCCCcccccc
Confidence 6778887665432111 1111122369999999999999988 888999999999999999999987
No 143
>smart00248 ANK ankyrin repeats. Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.
Probab=91.87 E-value=0.25 Score=33.35 Aligned_cols=28 Identities=39% Similarity=0.544 Sum_probs=24.4
Q ss_pred CchHHHHHHHcCCHHHHHHHHHHHHhCCCCCc
Q 001480 27 VQKDLCLAVREGSLADVESALALLKKNGGNIN 58 (1071)
Q Consensus 27 g~TpLh~Aa~~G~~~~v~~lL~lLl~~GadiN 58 (1071)
+.||||+|+..++.++++ +|++++.+++
T Consensus 2 ~~~~l~~~~~~~~~~~~~----~ll~~~~~~~ 29 (30)
T smart00248 2 GRTPLHLAAENGNLEVVK----LLLDKGADIN 29 (30)
T ss_pred CCCHHHHHHHcCCHHHHH----HHHHcCCCCC
Confidence 678999999999999998 7888888765
No 144
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=91.40 E-value=35 Score=40.05 Aligned_cols=289 Identities=10% Similarity=0.063 Sum_probs=126.6
Q ss_pred CceEEEEecCCceEEEEecCC-cEEEEecCCCCCCCCCCCccCCCCcceeeeeeeecCCCCCCEEEEEecCc--------
Q 001480 187 GFVIKLISAAKFHSVAVTSLG-EVYTWGYGRGGRLGHPDFDIHSGQAAVITPRRVTSGLGSRRVKTIAAAKH-------- 257 (1071)
Q Consensus 187 ~~~I~~Va~G~~HslaLT~dG-~Vy~WG~N~~GQLG~g~~~~~s~~~~v~~P~~V~~~l~~~~Iv~IAcG~~-------- 257 (1071)
..-+..|..|...-.+++.|| .+|++-. .+-++-.|..+ ....++- .-....+..|..|..
T Consensus 37 ~~v~g~i~~G~~P~~~~spDg~~lyva~~-~~~R~~~G~~~---d~V~v~D------~~t~~~~~~i~~p~~p~~~~~~~ 106 (352)
T TIGR02658 37 GRVLGMTDGGFLPNPVVASDGSFFAHAST-VYSRIARGKRT---DYVEVID------PQTHLPIADIELPEGPRFLVGTY 106 (352)
T ss_pred CEEEEEEEccCCCceeECCCCCEEEEEec-cccccccCCCC---CEEEEEE------CccCcEEeEEccCCCchhhccCc
Confidence 345666777755555688887 4677643 22222222210 0111111 223345556665544
Q ss_pred -eEEEEEcCCc-EEEEeCCCCCCcCCCCCCCCCcceeeccCcccEEEEEEcCCceeEEecCCcEEEEeCCCCCCcCCCCC
Q 001480 258 -HTVLATEGGE-VFTWGSNREGQLGYTSVDTQPTPRRVSSLKLKIIAVAAANKHTAVVSESGEVFTWGCNREGQLGYGTS 335 (1071)
Q Consensus 258 -HslaLT~dG~-VyswG~N~~GQLG~g~~~~~~~P~~V~~l~~~Iv~VacG~~HSlaLT~dG~VY~WG~N~~GQLG~g~~ 335 (1071)
+.++|+.||+ +|..-.+....+..-+......-..|.-.. ...-+..+....+++..||..........|..-.
T Consensus 107 ~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~--- 182 (352)
T TIGR02658 107 PWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKI--- 182 (352)
T ss_pred cceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecCCccEEEeecCceEEEEecCCCceEE---
Confidence 4899999996 777643323333222222221111111111 1111122233333444455544444443333110
Q ss_pred CCCCcccceeeeccCCCCEEEEEecCCeEEEEeeCCcEEEEecCCCCC-CCccceeccccCCcEEEEEeCCCcceEEecC
Q 001480 336 NSASNYTPRVVESLKGKDLVGVAAAKYHTIVLGADGERVIVARNLKKS-GSTPLKFHRKIKLHVVSIAAGMVHSTALTED 414 (1071)
Q Consensus 336 ~~~~~~~P~~V~~l~~~~I~~IaaG~~htlaLt~dG~Vy~wG~n~~~~-~~~p~~~~~~~~~~I~~Ia~G~~hslaLt~d 414 (1071)
.+...+.+.....+. .. ..+.....-++++..|.||..--..... ...+....... ..-..+.-|...-++++.+
T Consensus 183 ~~~~vf~~~~~~v~~-rP--~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~-~~~~~wrP~g~q~ia~~~d 258 (352)
T TIGR02658 183 KPTEVFHPEDEYLIN-HP--AYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEA-EKADGWRPGGWQQVAYHRA 258 (352)
T ss_pred eeeeeecCCcccccc-CC--ceEcCCCcEEEEecCCeEEEEecCCCcceecceeeecccc-ccccccCCCcceeEEEcCC
Confidence 000000010111111 11 2244345667777778888875321110 11111111000 0001234455555777754
Q ss_pred -CcEEEEeC-------CCCCCceeeeeecCCceeEEEEeCC-cEEEEEeeCCcEEEecCCCCCCCCCceEEecCcccEEE
Q 001480 415 -GALFYWAS-------SDPDLRCQQLYSMCGRNVVSISAGK-YWTAAVTATGDVYMWDGKKSKDNPPLVTRLHGIKKATS 485 (1071)
Q Consensus 415 -G~Vy~WG~-------n~~~~~p~~v~~l~g~~Vv~IaaG~-~htlaLT~dG~Vy~WG~N~~~~~~~~p~~v~g~~~V~~ 485 (1071)
+++|+-.. ..++-.-..+..-....+..|..|. -|.++++.||+.+.+-.|..... .....+...+.+..
T Consensus 259 g~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~-VsViD~~t~k~i~~ 337 (352)
T TIGR02658 259 RDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKT-LYIFDAETGKELSS 337 (352)
T ss_pred CCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCc-EEEEECcCCeEEee
Confidence 46776321 1111122222333445677777776 46899999999666665543221 22233444455566
Q ss_pred E-EecCCeEE
Q 001480 486 V-SVGETHLL 494 (1071)
Q Consensus 486 V-a~G~~Htl 494 (1071)
| ..|..-.+
T Consensus 338 i~~vg~~P~~ 347 (352)
T TIGR02658 338 VNQLGRGPQV 347 (352)
T ss_pred eccCCCCCeE
Confidence 6 55544333
No 145
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=91.13 E-value=0.2 Score=57.66 Aligned_cols=92 Identities=20% Similarity=0.302 Sum_probs=74.0
Q ss_pred hcccCCCCCCCCCCccc--ccccccchhHHHHHHHHHHhhcCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhhhhhhhh
Q 001480 529 DFMFNDESNNMPSAIDK--DDSGVRLAPSLKSLCENVAAQCLVEPRNALQLLEISDSLGADDLKKHCEDIAIRNLDYILT 606 (1071)
Q Consensus 529 dfmYtD~~~~~~~~~~~--~aAd~y~~~~LK~lCE~~l~~~~v~~~nv~~il~lA~~~~~~~Lk~~C~~f~~~nld~v~~ 606 (1071)
..||.|+.+=..+.+.. .+|.-..++.|-.-|-+++.+. +.++||+.-.+.|.+|+-+.+|+.|++++..||--++
T Consensus 129 gsLY~dEveI~l~dv~gvlAaA~~lqldgl~qrC~evMie~-lspkta~~yYea~ckYgle~vk~kc~ewl~~nl~~i~- 206 (488)
T KOG4682|consen 129 GSLYRDEVEIKLSDVVGVLAAACLLQLDGLIQRCGEVMIET-LSPKTACGYYEAACKYGLESVKKKCLEWLLNNLMTIQ- 206 (488)
T ss_pred hhhhhhheeccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh-cChhhhhHhhhhhhhhhhHHHHHHHHHHHHHhhHhhh-
Confidence 47888855421111111 1677788899999999999998 9999999999999999999999999999999999999
Q ss_pred cccchhccccHHHHHHH
Q 001480 607 VSSHSFASASLDILADL 623 (1071)
Q Consensus 607 ~~~~~f~~l~~~~l~el 623 (1071)
..+-+.+++.+++.-|
T Consensus 207 -~~q~l~ei~~~Lm~~l 222 (488)
T KOG4682|consen 207 -NVQLLKEISINLMKQL 222 (488)
T ss_pred -hHHHHHhcCHHHHHHH
Confidence 6567777777666555
No 146
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=90.97 E-value=23 Score=37.15 Aligned_cols=214 Identities=16% Similarity=0.110 Sum_probs=98.4
Q ss_pred eEEEEEcCCcEEEEeCCCCCCcCCCCCCCCCcceeeccCcccEEEEEEcCC-ceeEEec-CCcEEEEeCCCCCCcCCCCC
Q 001480 258 HTVLATEGGEVFTWGSNREGQLGYTSVDTQPTPRRVSSLKLKIIAVAAANK-HTAVVSE-SGEVFTWGCNREGQLGYGTS 335 (1071)
Q Consensus 258 HslaLT~dG~VyswG~N~~GQLG~g~~~~~~~P~~V~~l~~~Iv~VacG~~-HSlaLT~-dG~VY~WG~N~~GQLG~g~~ 335 (1071)
+.++...+|.|+.|-..... ....+......|..+..... ..++... +|.|+.|-......+.
T Consensus 65 ~l~~~~~~~~i~i~~~~~~~-----------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---- 129 (289)
T cd00200 65 YLASGSSDKTIRLWDLETGE-----------CVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLT---- 129 (289)
T ss_pred EEEEEcCCCeEEEEEcCccc-----------ceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEE----
Confidence 45555668999988654321 11122222234666655443 3333444 8899998654211110
Q ss_pred CCCCcccceeeeccCCCCEEEEEecC-CeEEEEee-CCcEEEEecCCCCCCCccceeccccCCcEEEEEeCCC--cceEE
Q 001480 336 NSASNYTPRVVESLKGKDLVGVAAAK-YHTIVLGA-DGERVIVARNLKKSGSTPLKFHRKIKLHVVSIAAGMV--HSTAL 411 (1071)
Q Consensus 336 ~~~~~~~P~~V~~l~~~~I~~IaaG~-~htlaLt~-dG~Vy~wG~n~~~~~~~p~~~~~~~~~~I~~Ia~G~~--hslaL 411 (1071)
.+. .....|..+.... ...++... +|.++.|-..... +..........|..+..... +.++.
T Consensus 130 ---------~~~-~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~----~~~~~~~~~~~i~~~~~~~~~~~l~~~ 195 (289)
T cd00200 130 ---------TLR-GHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGK----CVATLTGHTGEVNSVAFSPDGEKLLSS 195 (289)
T ss_pred ---------Eec-cCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccc----cceeEecCccccceEEECCCcCEEEEe
Confidence 011 1112355555544 23333333 8888888654211 11111111224455544433 45555
Q ss_pred ecCCcEEEEeCCCCCCceeeeeecCCceeEEEEeCC-cEEEEEee-CCcEEEecCCCCCCCCCceEEecC-cccEEEEEe
Q 001480 412 TEDGALFYWASSDPDLRCQQLYSMCGRNVVSISAGK-YWTAAVTA-TGDVYMWDGKKSKDNPPLVTRLHG-IKKATSVSV 488 (1071)
Q Consensus 412 t~dG~Vy~WG~n~~~~~p~~v~~l~g~~Vv~IaaG~-~htlaLT~-dG~Vy~WG~N~~~~~~~~p~~v~g-~~~V~~Va~ 488 (1071)
..+|.++.|-....... .........+..+.... ...++... +|.++.|....... ...+.. ...+..++.
T Consensus 196 ~~~~~i~i~d~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~----~~~~~~~~~~i~~~~~ 269 (289)
T cd00200 196 SSDGTIKLWDLSTGKCL--GTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGEC----VQTLSGHTNSVTSLAW 269 (289)
T ss_pred cCCCcEEEEECCCCcee--cchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCcee----EEEccccCCcEEEEEE
Confidence 56888888876532111 11101122455555544 23333333 89999997554221 111111 124666666
Q ss_pred cCC-eEEEEEeCCCCccCC
Q 001480 489 GET-HLLIVGSLYHPIYPP 506 (1071)
Q Consensus 489 G~~-HtlaL~s~~~~v~~w 506 (1071)
... ..++.+..++.+.-|
T Consensus 270 ~~~~~~l~~~~~d~~i~iw 288 (289)
T cd00200 270 SPDGKRLASGSADGTIRIW 288 (289)
T ss_pred CCCCCEEEEecCCCeEEec
Confidence 554 334444444444333
No 147
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=90.84 E-value=0.58 Score=55.25 Aligned_cols=92 Identities=17% Similarity=0.292 Sum_probs=69.9
Q ss_pred hcccCCCCCCCC-CCcc-cccccccchhHHHHHHHHHHhhcCCCcccHHHHHHH-HHhcCchhHHHHHHHHHHhhhhhhh
Q 001480 529 DFMFNDESNNMP-SAID-KDDSGVRLAPSLKSLCENVAAQCLVEPRNALQLLEI-SDSLGADDLKKHCEDIAIRNLDYIL 605 (1071)
Q Consensus 529 dfmYtD~~~~~~-~~~~-~~aAd~y~~~~LK~lCE~~l~~~~v~~~nv~~il~l-A~~~~~~~Lk~~C~~f~~~nld~v~ 605 (1071)
+|||.|...-.. ..+. .++|+.|.++.|+.-|-+.|... +-..|+.-.|-- |.....++|-+.|++.+..++...+
T Consensus 176 ~flYsdev~~~~dtvi~tl~~AkKY~VpaLer~CVkflr~~-l~~~naf~~L~q~A~lf~ep~Li~~c~e~id~~~~~al 254 (521)
T KOG2075|consen 176 RFLYSDEVKLAADTVITTLYAAKKYLVPALERQCVKFLRKN-LMADNAFLELFQRAKLFDEPSLISICLEVIDKSFEDAL 254 (521)
T ss_pred HHHhcchhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCChHHHHHHHHHHHhhcCHHHHHHHHHHhhhHHHhhh
Confidence 799998331111 1110 11899999999999999999887 667777766655 9999999999999999988876666
Q ss_pred hcccchhcccc--HHHHHHH
Q 001480 606 TVSSHSFASAS--LDILADL 623 (1071)
Q Consensus 606 ~~~~~~f~~l~--~~~l~el 623 (1071)
..+||-+.. .+.+.|+
T Consensus 255 --~~EGf~did~~~dt~~ev 272 (521)
T KOG2075|consen 255 --TPEGFCDIDSTRDTYEEV 272 (521)
T ss_pred --CccceeehhhHHHHHHHH
Confidence 689999987 5555555
No 148
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=90.13 E-value=0.58 Score=58.66 Aligned_cols=61 Identities=31% Similarity=0.254 Sum_probs=43.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCC---------c-ccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCC
Q 001480 30 DLCLAVREGSLADVESALALLKKNGGNI---------N-SRNIFGLTPLHSAIWRNQVPIVRRLLAAGADPDARD 94 (1071)
Q Consensus 30 pLh~Aa~~G~~~~v~~lL~lLl~~Gadi---------N-~~d~~G~TpLH~Aa~~g~~eivk~LL~~GAd~n~~d 94 (1071)
+|.+|+..|....|+ +++.+-... + ..-..+.|||++||..++++|+++||..|+.+....
T Consensus 91 ALL~aI~~~~v~~VE----~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~PH 161 (822)
T KOG3609|consen 91 ALLLAIAVGSVPLVE----LLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPIPH 161 (822)
T ss_pred HHHHHHHHHHHHHHH----HHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCCCc
Confidence 366677666666666 444443322 1 112457899999999999999999999999877644
No 149
>PLN02153 epithiospecifier protein
Probab=89.83 E-value=43 Score=38.59 Aligned_cols=20 Identities=30% Similarity=0.305 Sum_probs=13.4
Q ss_pred EEEEEeeCCcEEEecCCCCC
Q 001480 449 WTAAVTATGDVYMWDGKKSK 468 (1071)
Q Consensus 449 htlaLT~dG~Vy~WG~N~~~ 468 (1071)
+++.+..++++|+||+-...
T Consensus 307 ~~~~v~~~~~~~~~gG~~~~ 326 (341)
T PLN02153 307 TTATVYGKNGLLMHGGKLPT 326 (341)
T ss_pred cccccCCcceEEEEcCcCCC
Confidence 34455666789999976543
No 150
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=88.21 E-value=84 Score=39.78 Aligned_cols=72 Identities=21% Similarity=0.215 Sum_probs=43.5
Q ss_pred cEEEEEeCCCcceEEe--cCCcEEEEeCCCCCCceeeeeecCCceeEEEEeCCcEEEEEeeCCcEEEecCCCCC
Q 001480 397 HVVSIAAGMVHSTALT--EDGALFYWASSDPDLRCQQLYSMCGRNVVSISAGKYWTAAVTATGDVYMWDGKKSK 468 (1071)
Q Consensus 397 ~I~~Ia~G~~hslaLt--~dG~Vy~WG~n~~~~~p~~v~~l~g~~Vv~IaaG~~htlaLT~dG~Vy~WG~N~~~ 468 (1071)
.+..++-...-.++.| +||+|-+|.....--..+......+...+++..-.+..+...=||.|-+|..++..
T Consensus 352 ~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYr 425 (893)
T KOG0291|consen 352 RITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYR 425 (893)
T ss_pred ceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccc
Confidence 4555555554444444 67777777654422222222334455666777776777777789999999987754
No 151
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=87.59 E-value=13 Score=40.95 Aligned_cols=109 Identities=14% Similarity=0.161 Sum_probs=59.8
Q ss_pred CCEEEEE--ecCCeEEEEeeCCcEEEEecCCCCCCCccceeccccCCcEEEEE--eCCCcceEEecCCcEEEEeCCCCCC
Q 001480 352 KDLVGVA--AAKYHTIVLGADGERVIVARNLKKSGSTPLKFHRKIKLHVVSIA--AGMVHSTALTEDGALFYWASSDPDL 427 (1071)
Q Consensus 352 ~~I~~Ia--aG~~htlaLt~dG~Vy~wG~n~~~~~~~p~~~~~~~~~~I~~Ia--~G~~hslaLt~dG~Vy~WG~n~~~~ 427 (1071)
++|..|. |-....+-=.+||.+-.|---. ...+..+... ..|..|. .-..+.+.-+.+|.|++|--.+...
T Consensus 84 kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~---~~~qR~~~~~--spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c 158 (311)
T KOG0315|consen 84 KNVTAVGFQCDGRWMYTGSEDGTVKIWDLRS---LSCQRNYQHN--SPVNTVVLHPNQTELISGDQSGNIRVWDLGENSC 158 (311)
T ss_pred CceEEEEEeecCeEEEecCCCceEEEEeccC---cccchhccCC--CCcceEEecCCcceEEeecCCCcEEEEEccCCcc
Confidence 3454443 3333333334677777775321 1111112211 2333333 3445566667899999998765443
Q ss_pred ceeeeeecCCceeEEEEeCCc--EEEEEeeCCcEEEecCCC
Q 001480 428 RCQQLYSMCGRNVVSISAGKY--WTAAVTATGDVYMWDGKK 466 (1071)
Q Consensus 428 ~p~~v~~l~g~~Vv~IaaG~~--htlaLT~dG~Vy~WG~N~ 466 (1071)
....++ -.+..|.+++.+.. ..+++++.|.+|+|-.-+
T Consensus 159 ~~~liP-e~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~ 198 (311)
T KOG0315|consen 159 THELIP-EDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLN 198 (311)
T ss_pred ccccCC-CCCcceeeEEEcCCCcEEEEecCCccEEEEEccC
Confidence 333332 22356777777654 455678899999998544
No 152
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=87.46 E-value=1.1 Score=42.35 Aligned_cols=52 Identities=23% Similarity=0.309 Sum_probs=45.5
Q ss_pred cccchhHHHHHHHHHHhhc-CCC-cccHHHHHHHHHhcCchhHHHHHHHHHHhh
Q 001480 549 GVRLAPSLKSLCENVAAQC-LVE-PRNALQLLEISDSLGADDLKKHCEDIAIRN 600 (1071)
Q Consensus 549 d~y~~~~LK~lCE~~l~~~-~v~-~~nv~~il~lA~~~~~~~Lk~~C~~f~~~n 600 (1071)
+....+.++.+.+..+... .++ .+++..++.+|+.++.+.|+++|.+|+.+|
T Consensus 57 ~~~~~~~~~~~l~~~Y~~~~~~~~~~~~~~ll~lA~~~~~~~L~~~~~~~l~~~ 110 (111)
T PF00651_consen 57 PDVSPEAFEAFLEYMYTGEIEINSDENVEELLELADKLQIPELKKACEKFLQES 110 (111)
T ss_dssp TTSCHHHHHHHHHHHHHSEEEEE-TTTHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccCCcccCCHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhC
Confidence 4566788999999999776 455 889999999999999999999999999876
No 153
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=86.38 E-value=81 Score=37.71 Aligned_cols=198 Identities=11% Similarity=0.098 Sum_probs=96.5
Q ss_pred CCEEEEEe-cCceEEEEEcCCcEEEEeCCCCCCcCCCCCCCCCcceeeccC---cccEEEEEEcCCceeEEecCCcEEEE
Q 001480 247 RRVKTIAA-AKHHTVLATEGGEVFTWGSNREGQLGYTSVDTQPTPRRVSSL---KLKIIAVAAANKHTAVVSESGEVFTW 322 (1071)
Q Consensus 247 ~~Iv~IAc-G~~HslaLT~dG~VyswG~N~~GQLG~g~~~~~~~P~~V~~l---~~~Iv~VacG~~HSlaLT~dG~VY~W 322 (1071)
.+|+.+.- -..+.++|+++|.++.+ |-+|.. ....+..+... ..++-.+..+..-.++||.++++|.-
T Consensus 81 ~~iv~~~wt~~e~LvvV~~dG~v~vy--~~~G~~------~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt~~~~~~~v 152 (410)
T PF04841_consen 81 GRIVGMGWTDDEELVVVQSDGTVRVY--DLFGEF------QFSLGEEIEEEKVLECRIFAIWFYKNGIVVLTGNNRFYVV 152 (410)
T ss_pred CCEEEEEECCCCeEEEEEcCCEEEEE--eCCCce------eechhhhccccCcccccccccccCCCCEEEECCCCeEEEE
Confidence 46666654 34578899999998876 333433 11112222111 12334445555667889999999988
Q ss_pred eCCCCCCcCCCCCCCCCcccceeeec---cCC-CCEEEEEecCCeEEEE-eeCCcEEEEecCCCCCCCccceeccccCCc
Q 001480 323 GCNREGQLGYGTSNSASNYTPRVVES---LKG-KDLVGVAAAKYHTIVL-GADGERVIVARNLKKSGSTPLKFHRKIKLH 397 (1071)
Q Consensus 323 G~N~~GQLG~g~~~~~~~~~P~~V~~---l~~-~~I~~IaaG~~htlaL-t~dG~Vy~wG~n~~~~~~~p~~~~~~~~~~ 397 (1071)
=.... ..-.... ...|..... ... ..+ .+..+.....++ ..++.++..-.+.... +. ...+
T Consensus 153 ~n~~~-~~~~~~~----~~~p~~~~~~~~~~~~~~i-~~l~~~~~~~i~~~~g~~i~~i~~~~~~~------i~--~~~~ 218 (410)
T PF04841_consen 153 NNIDE-PVKLRRL----PEIPGLWTKFHWWPSWTVI-PLLSSDRVVEILLANGETIYIIDENSFKQ------ID--SDGP 218 (410)
T ss_pred eCccc-cchhhcc----ccCCCcccccccccccccc-eEeecCcceEEEEecCCEEEEEEcccccc------cc--CCCC
Confidence 33321 1100000 011221110 011 112 222333333333 3334455443332111 11 1236
Q ss_pred EEEEEeC--CCcceEEecCCcEEEEeCCCCCCceeeeeecCCceeEEEEeCCcEEEEEeeCCcEEEecCCCC
Q 001480 398 VVSIAAG--MVHSTALTEDGALFYWASSDPDLRCQQLYSMCGRNVVSISAGKYWTAAVTATGDVYMWDGKKS 467 (1071)
Q Consensus 398 I~~Ia~G--~~hslaLt~dG~Vy~WG~n~~~~~p~~v~~l~g~~Vv~IaaG~~htlaLT~dG~Vy~WG~N~~ 467 (1071)
|.+|+.. +.|.++++++|.+|+.-+.-.......-.........-..||.. ++++.-...|+..|.++.
T Consensus 219 i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~d-av~l~~~~~l~lvg~~~~ 289 (410)
T PF04841_consen 219 IIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGND-AVVLSWEDELLLVGPDGD 289 (410)
T ss_pred eEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCC-cEEEEeCCEEEEECCCCC
Confidence 7777766 45677788889999876543222111111112233444568875 455555778999986654
No 154
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=85.94 E-value=1.1e+02 Score=38.80 Aligned_cols=109 Identities=18% Similarity=0.176 Sum_probs=60.3
Q ss_pred EEEEEcCCcEEEEeCCCCCCcCCCCCCCCCcceeeccCcccEEEEEEcCCceeEE--ecCCcEEEEeCCCCCCcCCCCCC
Q 001480 259 TVLATEGGEVFTWGSNREGQLGYTSVDTQPTPRRVSSLKLKIIAVAAANKHTAVV--SESGEVFTWGCNREGQLGYGTSN 336 (1071)
Q Consensus 259 slaLT~dG~VyswG~N~~GQLG~g~~~~~~~P~~V~~l~~~Iv~VacG~~HSlaL--T~dG~VY~WG~N~~GQLG~g~~~ 336 (1071)
++.+...|.-.++|...-|||+.-.......--+-.+-...|..++-..+-.++. .+||+|-+|-.. .|-|-
T Consensus 312 t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~-SgfC~----- 385 (893)
T KOG0291|consen 312 TVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQ-SGFCF----- 385 (893)
T ss_pred EEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEecc-CceEE-----
Confidence 4444566888888888888887543222111111111113455555555544444 367788887433 11110
Q ss_pred CCCcccceeeeccCCCCEEEEEecCCeEEEEeeCCcEEEEecC
Q 001480 337 SASNYTPRVVESLKGKDLVGVAAAKYHTIVLGADGERVIVARN 379 (1071)
Q Consensus 337 ~~~~~~P~~V~~l~~~~I~~IaaG~~htlaLt~dG~Vy~wG~n 379 (1071)
-+.-+.-.+...+++..-.+..+...-||.|-+|--.
T Consensus 386 ------vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlk 422 (893)
T KOG0291|consen 386 ------VTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLK 422 (893)
T ss_pred ------EEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeec
Confidence 0111112344566777777888888889999999654
No 155
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=85.73 E-value=0.078 Score=66.78 Aligned_cols=136 Identities=17% Similarity=0.210 Sum_probs=93.7
Q ss_pred CCceEEEEecCCceEEEEecCCcEEEEecCCCCCCCCCCCccCCCCcceeeeeeeecCCCCCCEEEEEecCceEEEEEcC
Q 001480 186 HGFVIKLISAAKFHSVAVTSLGEVYTWGYGRGGRLGHPDFDIHSGQAAVITPRRVTSGLGSRRVKTIAAAKHHTVLATEG 265 (1071)
Q Consensus 186 ~~~~I~~Va~G~~HslaLT~dG~Vy~WG~N~~GQLG~g~~~~~s~~~~v~~P~~V~~~l~~~~Iv~IAcG~~HslaLT~d 265 (1071)
.+.++..|.+-.+..++|..+|++|.|-+...--|-.+.. .......|..-..++.+.+|+.+++..-..-++|++
T Consensus 372 dan~~I~I~A~s~el~AlhrkGelYqWaWdESEglddpla----i~kn~dHPd~a~iG~hge~ii~lSanniR~si~T~n 447 (3015)
T KOG0943|consen 372 DANKFICIGALSSELLALHRKGELYQWAWDESEGLDDPLA----INKNLDHPDAAFIGLHGEKIILLSANNIRASIATEN 447 (3015)
T ss_pred CCCeeEEeehhHHHHHHHhhCCceeeeecccccCCCChhh----cccCCCCCccceecccCCeeEEeecCceeeeeeecC
Confidence 3457778877788889999999999999876543333211 122334455444477889999999999999999999
Q ss_pred CcEEEEeCCCCCCcCCCC--CCCCCcceeeccCcccEEEEEEcCCceeEEecCCcEEEEeCCCCCC
Q 001480 266 GEVFTWGSNREGQLGYTS--VDTQPTPRRVSSLKLKIIAVAAANKHTAVVSESGEVFTWGCNREGQ 329 (1071)
Q Consensus 266 G~VyswG~N~~GQLG~g~--~~~~~~P~~V~~l~~~Iv~VacG~~HSlaLT~dG~VY~WG~N~~GQ 329 (1071)
|.|-+|=.- +|.+- .-....-+.+..-...+++..|...|+++..+|+.+|.||.-.+-|
T Consensus 448 ghlasWlDE----cgagV~fkLa~ea~Tkieed~~maVqd~~~adhlaAf~~dniihWcGiVPf~e 509 (3015)
T KOG0943|consen 448 GHLASWLDE----CGAGVAFKLAHEAQTKIEEDGEMAVQDHCCADHLAAFLEDNIIHWCGIVPFSE 509 (3015)
T ss_pred CchhhHHhh----hhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHhhhceeeEEeeeeehh
Confidence 999999432 22221 1111122333333456788889999999999999999999765544
No 156
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=85.28 E-value=67 Score=37.32 Aligned_cols=55 Identities=18% Similarity=0.168 Sum_probs=31.9
Q ss_pred CCcceEEecCCcEEEEeCCCCCCceeeeeecCCc--eeEEEEeCCcEEEEEeeCCcEEEe
Q 001480 405 MVHSTALTEDGALFYWASSDPDLRCQQLYSMCGR--NVVSISAGKYWTAAVTATGDVYMW 462 (1071)
Q Consensus 405 ~~hslaLt~dG~Vy~WG~n~~~~~p~~v~~l~g~--~Vv~IaaG~~htlaLT~dG~Vy~W 462 (1071)
..+.++.+.+|.||++-..+....- ... +.+. ...-+..+ .+.++.+.+|.||+|
T Consensus 320 g~~l~~~~~~G~l~~~d~~tG~~~~-~~~-~~~~~~~~sp~~~~-~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 320 GGYLVVGDFEGYLHWLSREDGSFVA-RLK-TDGSGIASPPVVVG-DGLLVQTRDGDLYAF 376 (377)
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEE-EEE-cCCCccccCCEEEC-CEEEEEeCCceEEEe
Confidence 3577777889999999755433221 111 1111 11112333 567788889999986
No 157
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=84.33 E-value=0.25 Score=62.51 Aligned_cols=125 Identities=14% Similarity=0.152 Sum_probs=88.5
Q ss_pred ccEEEEEEcCCceeEEecCCcEEEEeCCCCCCcCCCCCCCCCcccceee-eccCCCCEEEEEecCCeEEEEeeCCcEEEE
Q 001480 298 LKIIAVAAANKHTAVVSESGEVFTWGCNREGQLGYGTSNSASNYTPRVV-ESLKGKDLVGVAAAKYHTIVLGADGERVIV 376 (1071)
Q Consensus 298 ~~Iv~VacG~~HSlaLT~dG~VY~WG~N~~GQLG~g~~~~~~~~~P~~V-~~l~~~~I~~IaaG~~htlaLt~dG~Vy~w 376 (1071)
.+++.|.+-++..++|..+|++|.|-+...--|...-....+...|..- -.+.+.+|+.+++..-..-++|.+|.+..|
T Consensus 374 n~~I~I~A~s~el~AlhrkGelYqWaWdESEglddplai~kn~dHPd~a~iG~hge~ii~lSanniR~si~T~nghlasW 453 (3015)
T KOG0943|consen 374 NKFICIGALSSELLALHRKGELYQWAWDESEGLDDPLAINKNLDHPDAAFIGLHGEKIILLSANNIRASIATENGHLASW 453 (3015)
T ss_pred CeeEEeehhHHHHHHHhhCCceeeeecccccCCCChhhcccCCCCCccceecccCCeeEEeecCceeeeeeecCCchhhH
Confidence 5788999999999999999999999988665554433333334445443 356788999999999999999999999998
Q ss_pred ecCCCCCC-----CccceeccccCCcEEEEEeCCCcceEEecCCcEEEEeC
Q 001480 377 ARNLKKSG-----STPLKFHRKIKLHVVSIAAGMVHSTALTEDGALFYWAS 422 (1071)
Q Consensus 377 G~n~~~~~-----~~p~~~~~~~~~~I~~Ia~G~~hslaLt~dG~Vy~WG~ 422 (1071)
-....... ..........+..+++.-|...|.++..+|+.+|-||-
T Consensus 454 lDEcgagV~fkLa~ea~Tkieed~~maVqd~~~adhlaAf~~dniihWcGi 504 (3015)
T KOG0943|consen 454 LDECGAGVAFKLAHEAQTKIEEDGEMAVQDHCCADHLAAFLEDNIIHWCGI 504 (3015)
T ss_pred HhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHhhhceeeEEee
Confidence 54311110 11111112233456667788889999999999999994
No 158
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=84.02 E-value=35 Score=40.67 Aligned_cols=155 Identities=14% Similarity=0.155 Sum_probs=72.4
Q ss_pred CEEEEEecC--ceEEEEEcCCcEEEEeCCCCCCcCCCCCCCCCcceeeccCcccEEEEEEcCCceeEE--ecCCcEEEEe
Q 001480 248 RVKTIAAAK--HHTVLATEGGEVFTWGSNREGQLGYTSVDTQPTPRRVSSLKLKIIAVAAANKHTAVV--SESGEVFTWG 323 (1071)
Q Consensus 248 ~Iv~IAcG~--~HslaLT~dG~VyswG~N~~GQLG~g~~~~~~~P~~V~~l~~~Iv~VacG~~HSlaL--T~dG~VY~WG 323 (1071)
.|..+++.. ++.++=|..|++|.|=-+.---|-.- ..--..|+.+....+-+.++ ..||.|++|=
T Consensus 83 ~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~-----------~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~ 151 (476)
T KOG0646|consen 83 PVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVL-----------SAHYQSITCLKFSDDGSHIITGSKDGAVLVWL 151 (476)
T ss_pred ceeeeecCCCceEEEeecccCcEEEEEeccccHHHHH-----------HhhccceeEEEEeCCCcEEEecCCCccEEEEE
Confidence 344444432 33334458899999975532111100 00002466666666655555 4688999995
Q ss_pred CCCCCCcCCCCCCCCCcccceeeeccCCCCEEEEEecCCe--EEEEe--eCCcEEEEecCCCCCCCccceeccccCCcEE
Q 001480 324 CNREGQLGYGTSNSASNYTPRVVESLKGKDLVGVAAAKYH--TIVLG--ADGERVIVARNLKKSGSTPLKFHRKIKLHVV 399 (1071)
Q Consensus 324 ~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~I~~IaaG~~h--tlaLt--~dG~Vy~wG~n~~~~~~~p~~~~~~~~~~I~ 399 (1071)
.-+-- .........|..+-.--...|+++.+|..- +.++| .|..+-+|--... ..-..+..+..+.-.
T Consensus 152 l~~lv-----~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g---~LLlti~fp~si~av 223 (476)
T KOG0646|consen 152 LTDLV-----SADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLG---VLLLTITFPSSIKAV 223 (476)
T ss_pred EEeec-----ccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccc---eeeEEEecCCcceeE
Confidence 32110 111111233444433334467777776542 22222 2333333432211 111112222223444
Q ss_pred EEEeCCCcceEEecCCcEEEEe
Q 001480 400 SIAAGMVHSTALTEDGALFYWA 421 (1071)
Q Consensus 400 ~Ia~G~~hslaLt~dG~Vy~WG 421 (1071)
-+.-+..+.++=+++|.+|..-
T Consensus 224 ~lDpae~~~yiGt~~G~I~~~~ 245 (476)
T KOG0646|consen 224 ALDPAERVVYIGTEEGKIFQNL 245 (476)
T ss_pred EEcccccEEEecCCcceEEeee
Confidence 4555666777777888877643
No 159
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=83.88 E-value=77 Score=35.28 Aligned_cols=99 Identities=12% Similarity=0.152 Sum_probs=53.8
Q ss_pred CeEEEEeeCCcEEEEecC--CCCCCCccceeccccCCcEEEEEeCCC--cceEEecCCcEEEEeCCCCC----Cceeeee
Q 001480 362 YHTIVLGADGERVIVARN--LKKSGSTPLKFHRKIKLHVVSIAAGMV--HSTALTEDGALFYWASSDPD----LRCQQLY 433 (1071)
Q Consensus 362 ~htlaLt~dG~Vy~wG~n--~~~~~~~p~~~~~~~~~~I~~Ia~G~~--hslaLt~dG~Vy~WG~n~~~----~~p~~v~ 433 (1071)
.+-+.-+.+|.|++|--. .......|.. ...|.++..... -.++.++.|++|+|-.-... +.|....
T Consensus 137 teLis~dqsg~irvWDl~~~~c~~~liPe~-----~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~ 211 (311)
T KOG0315|consen 137 TELISGDQSGNIRVWDLGENSCTHELIPED-----DTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKF 211 (311)
T ss_pred ceEEeecCCCcEEEEEccCCccccccCCCC-----CcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhhe
Confidence 344555678999998543 2333333321 245666666654 45677889999999864422 2222112
Q ss_pred ecCCceeEEE--EeCCcEEEEEeeCCcEEEecCC
Q 001480 434 SMCGRNVVSI--SAGKYWTAAVTATGDVYMWDGK 465 (1071)
Q Consensus 434 ~l~g~~Vv~I--aaG~~htlaLT~dG~Vy~WG~N 465 (1071)
..-...+.+. +-...|.+...+|-+|++|...
T Consensus 212 ~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~ 245 (311)
T KOG0315|consen 212 QAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTD 245 (311)
T ss_pred ecccceEEEEEECCCCcEEEeecCCceEEEEecC
Confidence 2222223332 2233455555677788888643
No 160
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=83.59 E-value=97 Score=38.12 Aligned_cols=107 Identities=17% Similarity=0.190 Sum_probs=68.2
Q ss_pred ecCceEEEEEcCCcEEEEeCCCCCCcCCCCCCCC-CcceeeccCcccEEEEEEcC-CceeEEecCCcEE-EEeCCCCCCc
Q 001480 254 AAKHHTVLATEGGEVFTWGSNREGQLGYTSVDTQ-PTPRRVSSLKLKIIAVAAAN-KHTAVVSESGEVF-TWGCNREGQL 330 (1071)
Q Consensus 254 cG~~HslaLT~dG~VyswG~N~~GQLG~g~~~~~-~~P~~V~~l~~~Iv~VacG~-~HSlaLT~dG~VY-~WG~N~~GQL 330 (1071)
.|.....+|+.+|.+|-= -|....... ..-+.|... ..+.+|++|. .-..+++.+|.|| --|-..+.+.
T Consensus 190 ~g~~~awAI~s~Gd~y~R-------tGvs~~~P~GraW~~i~~~-t~L~qISagPtg~VwAvt~nG~vf~R~GVsRqNp~ 261 (705)
T KOG3669|consen 190 LGDDTAWAIRSSGDLYLR-------TGVSVDRPCGRAWKVICPY-TDLSQISAGPTGVVWAVTENGAVFYREGVSRQNPE 261 (705)
T ss_pred CCceEEEEEecCCcEEEe-------ccccCCCCCCceeeecCCC-CccceEeecCcceEEEEeeCCcEEEEecccccCCC
Confidence 455667778888888741 122111111 111122221 2689999999 5667899999976 4676666666
Q ss_pred CCCCCCCCCcccceeeeccCCCCEEEEEecCCeEEEEeeCCcEEEE
Q 001480 331 GYGTSNSASNYTPRVVESLKGKDLVGVAAAKYHTIVLGADGERVIV 376 (1071)
Q Consensus 331 G~g~~~~~~~~~P~~V~~l~~~~I~~IaaG~~htlaLt~dG~Vy~w 376 (1071)
|..=. ...+|+... .++.|+.|.....+|+.+|.+|.-
T Consensus 262 GdsWk---dI~tP~~a~-----~~v~iSvGt~t~Waldndg~lwfr 299 (705)
T KOG3669|consen 262 GDSWK---DIVTPRQAL-----EPVCISVGTQTLWALDNDGNLWFR 299 (705)
T ss_pred Cchhh---hccCccccc-----ceEEEEeccceEEEEecCCcEEEE
Confidence 64321 233454433 389999999999999999999874
No 161
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=83.57 E-value=0.94 Score=51.19 Aligned_cols=65 Identities=17% Similarity=0.116 Sum_probs=58.8
Q ss_pred cccccchhHHHHHHHHHHhhcCCCcccHHHHHHHHHhcCchhHHHHHHHHHHh--hhhhhhhcccchhcc
Q 001480 547 DSGVRLAPSLKSLCENVAAQCLVEPRNALQLLEISDSLGADDLKKHCEDIAIR--NLDYILTVSSHSFAS 614 (1071)
Q Consensus 547 aAd~y~~~~LK~lCE~~l~~~~v~~~nv~~il~lA~~~~~~~Lk~~C~~f~~~--nld~v~~~~~~~f~~ 614 (1071)
+|++|...+||..|+..++.. ++..+++..|+.|+.++...++..|..++.. ++|.+. ....+..
T Consensus 180 ~~f~~~~~~lk~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ld~l~--~~~~~~~ 246 (297)
T KOG1987|consen 180 AAFKYKNRHLKLACMPVLLSL-IETLNVSQSLQEASNYDLKEAKSALTYVIAAGFKLDWLE--KKLNEVK 246 (297)
T ss_pred hccccccHHHHHHHHHHHHHH-HHhhhhcccHHHhchhHHHHHHHHHHHHHhccchHhHHH--HHHHHHH
Confidence 789999999999999999996 9999999999999999999999999999875 999998 5555533
No 162
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=82.56 E-value=1.8 Score=49.22 Aligned_cols=81 Identities=19% Similarity=0.194 Sum_probs=64.3
Q ss_pred cccccccchhHHHHHHHHHHhhc-CCCcccHHHHHHHHHhcCchhHHHHHHHHHHhhhhhhhhccc-chhccccHHHHHH
Q 001480 545 KDDSGVRLAPSLKSLCENVAAQC-LVEPRNALQLLEISDSLGADDLKKHCEDIAIRNLDYILTVSS-HSFASASLDILAD 622 (1071)
Q Consensus 545 ~~aAd~y~~~~LK~lCE~~l~~~-~v~~~nv~~il~lA~~~~~~~Lk~~C~~f~~~nld~v~~~~~-~~f~~l~~~~l~e 622 (1071)
.+..-...+..+.-|-+++-.+. .++++||+.||--++.+..+.|.+.|+.|+..|+.+|+ .+ -.+.-|..++|.-
T Consensus 47 idisVhCDv~iF~WLm~yv~~~~p~l~~~NvvsIliSS~FL~M~~Lve~cl~y~~~~~~~Iv--~~~~nl~Cl~~~Ll~R 124 (317)
T PF11822_consen 47 IDISVHCDVHIFEWLMRYVKGEPPSLTPSNVVSILISSEFLQMESLVEECLQYCHDHMSEIV--ASPCNLNCLNDNLLTR 124 (317)
T ss_pred cceEEecChhHHHHHHHHhhcCCCcCCcCcEEEeEehhhhhccHHHHHHHHHHHHHhHHHHH--cCCCCcccCCHHHHHH
Confidence 44556777788887777776554 68999999999999999999999999999999999999 54 4455666767666
Q ss_pred HHHHh
Q 001480 623 LEKSL 627 (1071)
Q Consensus 623 l~~~~ 627 (1071)
|..++
T Consensus 125 La~~~ 129 (317)
T PF11822_consen 125 LADMF 129 (317)
T ss_pred HHHhc
Confidence 64433
No 163
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=81.91 E-value=1.3e+02 Score=39.02 Aligned_cols=238 Identities=15% Similarity=0.160 Sum_probs=109.3
Q ss_pred cCCceEEEEecCCc-EEEEecCCCCCCCCCCCccCCCCcceeeeeeeecCCCCCCEEEEEecCceEEEEEcCCcE--EEE
Q 001480 195 AAKFHSVAVTSLGE-VYTWGYGRGGRLGHPDFDIHSGQAAVITPRRVTSGLGSRRVKTIAAAKHHTVLATEGGEV--FTW 271 (1071)
Q Consensus 195 ~G~~HslaLT~dG~-Vy~WG~N~~GQLG~g~~~~~s~~~~v~~P~~V~~~l~~~~Iv~IAcG~~HslaLT~dG~V--ysw 271 (1071)
.++...++++.+|+ |+++|.+..=..= ........|..|. ..+..|..|+|-.+|.+.-++++.| |-+
T Consensus 13 t~G~t~i~~d~~gefi~tcgsdg~ir~~-------~~~sd~e~P~ti~--~~g~~v~~ia~~s~~f~~~s~~~tv~~y~f 83 (933)
T KOG1274|consen 13 TGGLTLICYDPDGEFICTCGSDGDIRKW-------KTNSDEEEPETID--ISGELVSSIACYSNHFLTGSEQNTVLRYKF 83 (933)
T ss_pred cCceEEEEEcCCCCEEEEecCCCceEEe-------ecCCcccCCchhh--ccCceeEEEeecccceEEeeccceEEEeeC
Confidence 45566777788874 6677765421110 0011113444443 1457899999999999999999875 555
Q ss_pred eCCCCCCcCCCCCCCCCcceeeccCcccEEEEEEcCCceeEEecCCcEEEEeCCCCCCcCCCCCCCCCcccceeeeccCC
Q 001480 272 GSNREGQLGYTSVDTQPTPRRVSSLKLKIIAVAAANKHTAVVSESGEVFTWGCNREGQLGYGTSNSASNYTPRVVESLKG 351 (1071)
Q Consensus 272 G~N~~GQLG~g~~~~~~~P~~V~~l~~~Iv~VacG~~HSlaLT~dG~VY~WG~N~~GQLG~g~~~~~~~~~P~~V~~l~~ 351 (1071)
++...+-+ ......|- +++.|. -+|+..+.|..+++--=....+..... ..... .
T Consensus 84 ps~~~~~i----L~Rftlp~-------r~~~v~----------g~g~~iaagsdD~~vK~~~~~D~s~~~---~lrgh-~ 138 (933)
T KOG1274|consen 84 PSGEEDTI----LARFTLPI-------RDLAVS----------GSGKMIAAGSDDTAVKLLNLDDSSQEK---VLRGH-D 138 (933)
T ss_pred CCCCccce----eeeeeccc-------eEEEEe----------cCCcEEEeecCceeEEEEeccccchhe---eeccc-C
Confidence 54433211 11111121 222222 233333333332221100000000000 01111 1
Q ss_pred CCEEEEEe--cCCeEEEEeeCCcEEEEecCCCCCCCccceecc---ccCCcEE---EEEeCCCcceEEecCCcEEEEeCC
Q 001480 352 KDLVGVAA--AKYHTIVLGADGERVIVARNLKKSGSTPLKFHR---KIKLHVV---SIAAGMVHSTALTEDGALFYWASS 423 (1071)
Q Consensus 352 ~~I~~Iaa--G~~htlaLt~dG~Vy~wG~n~~~~~~~p~~~~~---~~~~~I~---~Ia~G~~hslaLt~dG~Vy~WG~n 423 (1071)
..|.+|.. -..+-.+.+.||.|++|--.......+-..+.. ....+|. ...--+.+.++.-.++.|-++-.+
T Consensus 139 apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~ 218 (933)
T KOG1274|consen 139 APVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRK 218 (933)
T ss_pred CceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccC
Confidence 23444433 346667778899999997543221111100000 0101111 112223566666677777666655
Q ss_pred CCCCceeeeeecCC--ceeEEEEeCCcEEEEEeeCCcEEEecCCC
Q 001480 424 DPDLRCQQLYSMCG--RNVVSISAGKYWTAAVTATGDVYMWDGKK 466 (1071)
Q Consensus 424 ~~~~~p~~v~~l~g--~~Vv~IaaG~~htlaLT~dG~Vy~WG~N~ 466 (1071)
.............. ..+...+-.....++-+-+|+|.+|....
T Consensus 219 ~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 219 GWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred CceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 43222211111111 22333333345566778899999998663
No 164
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=80.53 E-value=29 Score=39.68 Aligned_cols=18 Identities=6% Similarity=0.097 Sum_probs=12.1
Q ss_pred cceEEecCCcEEEEeCCC
Q 001480 407 HSTALTEDGALFYWASSD 424 (1071)
Q Consensus 407 hslaLt~dG~Vy~WG~n~ 424 (1071)
++.+...++.+|++|..+
T Consensus 216 ~~~~~~~~~~iyv~GG~~ 233 (323)
T TIGR03548 216 AASIKINESLLLCIGGFN 233 (323)
T ss_pred eeEEEECCCEEEEECCcC
Confidence 333444678999999754
No 165
>PHA02713 hypothetical protein; Provisional
Probab=80.02 E-value=2 Score=53.28 Aligned_cols=54 Identities=19% Similarity=0.222 Sum_probs=49.3
Q ss_pred cchhHHHHHHHHHHhhcCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhhhhhhh
Q 001480 551 RLAPSLKSLCENVAAQCLVEPRNALQLLEISDSLGADDLKKHCEDIAIRNLDYIL 605 (1071)
Q Consensus 551 y~~~~LK~lCE~~l~~~~v~~~nv~~il~lA~~~~~~~Lk~~C~~f~~~nld~v~ 605 (1071)
...+.|+.|.++++... |+.+||..+|..|+.+.-+.|++.|.+|+.++|+.-.
T Consensus 74 v~~~~~~~ll~y~Yt~~-i~~~nv~~ll~aA~~lqi~~l~~~C~~~l~~~l~~~N 127 (557)
T PHA02713 74 FDKDAVKNIVQYLYNRH-ISSMNVIDVLKCADYLLIDDLVTDCESYIKDYTNHDT 127 (557)
T ss_pred CCHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHHHCHHHHHHHHHHHHHhhCCccc
Confidence 45689999999999997 9999999999999999999999999999998877644
No 166
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=79.33 E-value=85 Score=32.75 Aligned_cols=215 Identities=17% Similarity=0.148 Sum_probs=98.6
Q ss_pred ceEEEEecCCcEEEEecCCCCCCCCCCCccCCCCcceeeeeeeecCCCCCCEEEEEecCc-eEEEEEc-CCcEEEEeCCC
Q 001480 198 FHSVAVTSLGEVYTWGYGRGGRLGHPDFDIHSGQAAVITPRRVTSGLGSRRVKTIAAAKH-HTVLATE-GGEVFTWGSNR 275 (1071)
Q Consensus 198 ~HslaLT~dG~Vy~WG~N~~GQLG~g~~~~~s~~~~v~~P~~V~~~l~~~~Iv~IAcG~~-HslaLT~-dG~VyswG~N~ 275 (1071)
.+.++...+|.|+.|-...... ...+. .....|..+..... ..++... +|.|+.|-...
T Consensus 64 ~~l~~~~~~~~i~i~~~~~~~~-----------------~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 124 (289)
T cd00200 64 TYLASGSSDKTIRLWDLETGEC-----------------VRTLT--GHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVET 124 (289)
T ss_pred CEEEEEcCCCeEEEEEcCcccc-----------------eEEEe--ccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCC
Confidence 3555566689999996543200 00111 11124555554433 3444444 88888886542
Q ss_pred CCCcCCCCCCCCCcceeeccCcccEEEEEEcCC-ceeEEec-CCcEEEEeCCCCCCcCCCCCCCCCcccceeeeccCCCC
Q 001480 276 EGQLGYTSVDTQPTPRRVSSLKLKIIAVAAANK-HTAVVSE-SGEVFTWGCNREGQLGYGTSNSASNYTPRVVESLKGKD 353 (1071)
Q Consensus 276 ~GQLG~g~~~~~~~P~~V~~l~~~Iv~VacG~~-HSlaLT~-dG~VY~WG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~ 353 (1071)
...+ ..+......|..+..... ..++... +|.|+.|-.+. +++ ..........
T Consensus 125 ~~~~-----------~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~-~~~-------------~~~~~~~~~~ 179 (289)
T cd00200 125 GKCL-----------TTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRT-GKC-------------VATLTGHTGE 179 (289)
T ss_pred cEEE-----------EEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccc-ccc-------------ceeEecCccc
Confidence 1111 111112234555555443 2333333 88888885431 110 0000011123
Q ss_pred EEEEEecCC--eEEEEeeCCcEEEEecCCCCCCCccceeccccCCcEEEEEeCCCc-ceEEec-CCcEEEEeCCCCCCce
Q 001480 354 LVGVAAAKY--HTIVLGADGERVIVARNLKKSGSTPLKFHRKIKLHVVSIAAGMVH-STALTE-DGALFYWASSDPDLRC 429 (1071)
Q Consensus 354 I~~IaaG~~--htlaLt~dG~Vy~wG~n~~~~~~~p~~~~~~~~~~I~~Ia~G~~h-slaLt~-dG~Vy~WG~n~~~~~p 429 (1071)
|..+....+ +.++...+|.++.|-..... +..........|..+...... .++... +|.++.|-......
T Consensus 180 i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~-- 253 (289)
T cd00200 180 VNSVAFSPDGEKLLSSSSDGTIKLWDLSTGK----CLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGEC-- 253 (289)
T ss_pred cceEEECCCcCEEEEecCCCcEEEEECCCCc----eecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCcee--
Confidence 445544433 44445557888888654211 111110112255566555432 333333 88999997553211
Q ss_pred eeeeecCCceeEEEEeCC--cEEEEEeeCCcEEEe
Q 001480 430 QQLYSMCGRNVVSISAGK--YWTAAVTATGDVYMW 462 (1071)
Q Consensus 430 ~~v~~l~g~~Vv~IaaG~--~htlaLT~dG~Vy~W 462 (1071)
..........|..+.... ...+..+.+|.+.+|
T Consensus 254 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw 288 (289)
T cd00200 254 VQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIW 288 (289)
T ss_pred EEEccccCCcEEEEEECCCCCEEEEecCCCeEEec
Confidence 111111123455555444 344455667777776
No 167
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=79.08 E-value=20 Score=44.70 Aligned_cols=103 Identities=12% Similarity=0.089 Sum_probs=54.1
Q ss_pred EEeeCCcEEEEecCCCCCC-CccceeccccCC---cEEEEEeCCCcceEEecCCcEEEEeCCCCC--CceeeeeecCCce
Q 001480 366 VLGADGERVIVARNLKKSG-STPLKFHRKIKL---HVVSIAAGMVHSTALTEDGALFYWASSDPD--LRCQQLYSMCGRN 439 (1071)
Q Consensus 366 aLt~dG~Vy~wG~n~~~~~-~~p~~~~~~~~~---~I~~Ia~G~~hslaLt~dG~Vy~WG~n~~~--~~p~~v~~l~g~~ 439 (1071)
+..-+|.+|+.|....... ..-+..-.+... .+..+..-..+.-+..-+|.||+.|..+.. +............
T Consensus 423 v~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~ 502 (571)
T KOG4441|consen 423 VAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQ 502 (571)
T ss_pred EEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccCCCccceEEEEcCCCCc
Confidence 3447899999987544331 111111111111 111122222222255568899999976642 2222333333344
Q ss_pred eEEE---EeCCcEEEEEeeCCcEEEecCCCCC
Q 001480 440 VVSI---SAGKYWTAAVTATGDVYMWDGKKSK 468 (1071)
Q Consensus 440 Vv~I---aaG~~htlaLT~dG~Vy~WG~N~~~ 468 (1071)
++.+ ..+..+..+..-+|++|+-|+-.+.
T Consensus 503 W~~v~~m~~~rs~~g~~~~~~~ly~vGG~~~~ 534 (571)
T KOG4441|consen 503 WTMVAPMTSPRSAVGVVVLGGKLYAVGGFDGN 534 (571)
T ss_pred eeEcccCccccccccEEEECCEEEEEecccCc
Confidence 4444 3456676677789999999975443
No 168
>PHA03098 kelch-like protein; Provisional
Probab=78.00 E-value=2.5 Score=51.85 Aligned_cols=52 Identities=19% Similarity=0.195 Sum_probs=47.6
Q ss_pred chhHHHHHHHHHHhhc-CCCcccHHHHHHHHHhcCchhHHHHHHHHHHhhhhh
Q 001480 552 LAPSLKSLCENVAAQC-LVEPRNALQLLEISDSLGADDLKKHCEDIAIRNLDY 603 (1071)
Q Consensus 552 ~~~~LK~lCE~~l~~~-~v~~~nv~~il~lA~~~~~~~Lk~~C~~f~~~nld~ 603 (1071)
..+.++.+.+.++... .++.+||..||.+|+.+.-+.|+++|.+|+..+++.
T Consensus 55 ~~~~~~~~l~y~Ytg~~~i~~~~~~~ll~~A~~l~~~~l~~~C~~~l~~~l~~ 107 (534)
T PHA03098 55 DYDSFNEVIKYIYTGKINITSNNVKDILSIANYLIIDFLINLCINYIIKIIDD 107 (534)
T ss_pred CHHHHHHHHHHhcCCceEEcHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhCCH
Confidence 6789999999999888 579999999999999999999999999999887664
No 169
>PHA02790 Kelch-like protein; Provisional
Probab=76.48 E-value=3.2 Score=50.45 Aligned_cols=64 Identities=16% Similarity=0.123 Sum_probs=52.9
Q ss_pred cchhHHHHHHHHHHhhc-CCCcccHHHHHHHHHhcCchhHHHHHHHHHHhhhhhhhhcccchhcc
Q 001480 551 RLAPSLKSLCENVAAQC-LVEPRNALQLLEISDSLGADDLKKHCEDIAIRNLDYILTVSSHSFAS 614 (1071)
Q Consensus 551 y~~~~LK~lCE~~l~~~-~v~~~nv~~il~lA~~~~~~~Lk~~C~~f~~~nld~v~~~~~~~f~~ 614 (1071)
...+.|+.|.++.+... .|+.+||..||+.|+.+.-+.|+++|.+|+.++|+.-.+..--.|++
T Consensus 69 v~~~~l~~lldy~YTg~l~it~~nV~~ll~aA~~Lqi~~v~~~C~~fL~~~l~~~NCl~i~~~A~ 133 (480)
T PHA02790 69 LDIHSLTSIVIYSYTGKVYIDSHNVVNLLRASILTSVEFIIYTCINFILRDFRKEYCVECYMMGI 133 (480)
T ss_pred cCHHHHHHHHHhheeeeEEEecccHHHHHHHHHHhChHHHHHHHHHHHHhhCCcchHHHHHHHHH
Confidence 44578999999999888 78899999999999999999999999999998877654334333443
No 170
>PLN02193 nitrile-specifier protein
Probab=75.18 E-value=1.1e+02 Score=37.30 Aligned_cols=59 Identities=7% Similarity=0.091 Sum_probs=32.6
Q ss_pred CcceEEecCCcEEEEeCCCCC-CceeeeeecCCceeEEEEeC-------CcEEEEEeeCCcEEEecCCC
Q 001480 406 VHSTALTEDGALFYWASSDPD-LRCQQLYSMCGRNVVSISAG-------KYWTAAVTATGDVYMWDGKK 466 (1071)
Q Consensus 406 ~hslaLt~dG~Vy~WG~n~~~-~~p~~v~~l~g~~Vv~IaaG-------~~htlaLT~dG~Vy~WG~N~ 466 (1071)
.|++++ -+|++|+.|..+.. +....+..+.......+... ..|+++ .-++++|++|+..
T Consensus 321 ~~~~~~-~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~-~~~~~iyv~GG~~ 387 (470)
T PLN02193 321 GAGLEV-VQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASA-AVGKHIVIFGGEI 387 (470)
T ss_pred CcEEEE-ECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEE-EECCEEEEECCcc
Confidence 455554 47899988753211 12223334444455555432 235544 4578999999754
No 171
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=73.16 E-value=5.9 Score=47.16 Aligned_cols=51 Identities=10% Similarity=0.083 Sum_probs=42.0
Q ss_pred HHHHHHHHHHhhc-CCCcccHHHHHHHHHhcCchhHHHHHHHHHHhhhhhhh
Q 001480 555 SLKSLCENVAAQC-LVEPRNALQLLEISDSLGADDLKKHCEDIAIRNLDYIL 605 (1071)
Q Consensus 555 ~LK~lCE~~l~~~-~v~~~nv~~il~lA~~~~~~~Lk~~C~~f~~~nld~v~ 605 (1071)
..-.+...++++. -++.+|+..+|..|+.|--..|++.|.+|+..|+-+..
T Consensus 170 aFl~~L~flYsdev~~~~dtvi~tl~~AkKY~VpaLer~CVkflr~~l~~~n 221 (521)
T KOG2075|consen 170 AFLAFLRFLYSDEVKLAADTVITTLYAAKKYLVPALERQCVKFLRKNLMADN 221 (521)
T ss_pred HhHHHHHHHhcchhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCChH
Confidence 3444555556555 46899999999999999999999999999999987766
No 172
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=72.32 E-value=3.1e+02 Score=36.60 Aligned_cols=188 Identities=16% Similarity=0.107 Sum_probs=87.2
Q ss_pred cccEEEEEEcCCc--eeEEecCCcEEEEeCCCCCCc-CCCCCCCCCcccc---eeeeccCCCCEEEEEecCCeEE-EEee
Q 001480 297 KLKIIAVAAANKH--TAVVSESGEVFTWGCNREGQL-GYGTSNSASNYTP---RVVESLKGKDLVGVAAAKYHTI-VLGA 369 (1071)
Q Consensus 297 ~~~Iv~VacG~~H--SlaLT~dG~VY~WG~N~~GQL-G~g~~~~~~~~~P---~~V~~l~~~~I~~IaaG~~htl-aLt~ 369 (1071)
...|.+|+.+..+ .++++.+|.|+.|-.....-. +............ ..........+.++..-....+ ++..
T Consensus 426 ~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (928)
T PF04762_consen 426 PSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSD 505 (928)
T ss_pred CCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEe
Confidence 4689999999998 689999998777754322111 0000000000000 0001112234555554443333 3322
Q ss_pred CC----cEEEEecCCCCCCCccceeccccCCcEEEEEe-CCCc-ceEEecCCcEEEEeCCCCCCceeeeeecCCceeEEE
Q 001480 370 DG----ERVIVARNLKKSGSTPLKFHRKIKLHVVSIAA-GMVH-STALTEDGALFYWASSDPDLRCQQLYSMCGRNVVSI 443 (1071)
Q Consensus 370 dG----~Vy~wG~n~~~~~~~p~~~~~~~~~~I~~Ia~-G~~h-slaLt~dG~Vy~WG~n~~~~~p~~v~~l~g~~Vv~I 443 (1071)
.+ .+..+....... .............+..++. +..+ .++-+.+|++|..-.+.......++...+. .+.-+
T Consensus 506 ~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~G~v~~~~~~~~~~~~~~fp~~c~-~~~~~ 583 (928)
T PF04762_consen 506 SDSNQSKIVLVDIDDSEN-SASVESSTEVDGVVLIISSSPDSGSLYIQTNDGKVFQLSSDGELSQIVKFPQPCP-WMEVC 583 (928)
T ss_pred cCcccceEEEEEeccCCC-ceeEEEEeccCceEEEEeeCCCCcEEEEEECCCEEEEeecCCCccccccCCCCCc-EEEEE
Confidence 22 122222111111 1111111111223333333 3333 567789999996544432222222222221 12222
Q ss_pred EeCC----cEEEEEeeCCcEEEecCCCCCCCCCceEEecCcccEEEEEecCCeEEEEEeC
Q 001480 444 SAGK----YWTAAVTATGDVYMWDGKKSKDNPPLVTRLHGIKKATSVSVGETHLLIVGSL 499 (1071)
Q Consensus 444 aaG~----~htlaLT~dG~Vy~WG~N~~~~~~~~p~~v~g~~~V~~Va~G~~HtlaL~s~ 499 (1071)
..+. .+.+.|+..|++|+=+ ..+. .+++++++...|-++.+..
T Consensus 584 ~~~~~~~~~~~~GLs~~~~Ly~n~-----------~~la--~~~tSF~v~~~~Ll~TT~~ 630 (928)
T PF04762_consen 584 QINGSEDKRVLFGLSSNGRLYANS-----------RLLA--SNCTSFAVTDSFLLFTTTQ 630 (928)
T ss_pred EECCccceeEEEEECCCCEEEECC-----------EEEe--cCCceEEEEcCEEEEEecC
Confidence 2232 3688899999999722 1121 4788888888887776654
No 173
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=68.24 E-value=3.2e+02 Score=34.25 Aligned_cols=109 Identities=13% Similarity=0.059 Sum_probs=57.9
Q ss_pred ecCCeEEEEeeCCcEEEEecCCCCCCC----ccceeccccCCcEEEEEeCCCcceEEec--CCcEEEEeCCCCCCceeee
Q 001480 359 AAKYHTIVLGADGERVIVARNLKKSGS----TPLKFHRKIKLHVVSIAAGMVHSTALTE--DGALFYWASSDPDLRCQQL 432 (1071)
Q Consensus 359 aG~~htlaLt~dG~Vy~wG~n~~~~~~----~p~~~~~~~~~~I~~Ia~G~~hslaLt~--dG~Vy~WG~n~~~~~p~~v 432 (1071)
.-.++.++-|+.|.||..-+....... .+...+......|..|.....|--.++. |..|-.|-... ...|...
T Consensus 358 ~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~-~~~Pl~~ 436 (555)
T KOG1587|consen 358 TDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDV-IASPLLS 436 (555)
T ss_pred CCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccC-CCCcchh
Confidence 344778888999999986665333333 2232333334467777777655444433 34555554331 1112111
Q ss_pred eecCCceeEEEEeCCcE---EEEEeeCCcEEEecCCCCC
Q 001480 433 YSMCGRNVVSISAGKYW---TAAVTATGDVYMWDGKKSK 468 (1071)
Q Consensus 433 ~~l~g~~Vv~IaaG~~h---tlaLT~dG~Vy~WG~N~~~ 468 (1071)
.......|.+++=...| .++.+.+|.+++|..+.+.
T Consensus 437 ~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~ 475 (555)
T KOG1587|consen 437 LDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDD 475 (555)
T ss_pred hhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccc
Confidence 11111235555544444 3334569999999977654
No 174
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=66.65 E-value=21 Score=38.89 Aligned_cols=31 Identities=6% Similarity=-0.004 Sum_probs=26.5
Q ss_pred CCCEEEEEecCCeEEEEeeCCcEEEEecCCC
Q 001480 351 GKDLVGVAAAKYHTIVLGADGERVIVARNLK 381 (1071)
Q Consensus 351 ~~~I~~IaaG~~htlaLt~dG~Vy~wG~n~~ 381 (1071)
+.++..+.|...+.+++|.+|.+|+|--...
T Consensus 12 gs~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~ 42 (219)
T PF07569_consen 12 GSPVSFLECNGSYLLAITSSGLLYVWNLKKG 42 (219)
T ss_pred CCceEEEEeCCCEEEEEeCCCeEEEEECCCC
Confidence 4578889999999999999999999975543
No 175
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=66.59 E-value=84 Score=40.49 Aligned_cols=144 Identities=16% Similarity=0.243 Sum_probs=74.9
Q ss_pred EcCCceeEEecCCc-EEEEeCCCCCCcCCCCCCCCCcccceeeeccCCCCEEEEEecCCeEEEEeeCCcE--EEEecCCC
Q 001480 305 AANKHTAVVSESGE-VFTWGCNREGQLGYGTSNSASNYTPRVVESLKGKDLVGVAAAKYHTIVLGADGER--VIVARNLK 381 (1071)
Q Consensus 305 cG~~HSlaLT~dG~-VY~WG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~I~~IaaG~~htlaLt~dG~V--y~wG~n~~ 381 (1071)
.++...++++.+|+ |+++|.+ |-.-.-...+ ..-.|..+.. .+..|..|++-.+|.+.-+.++.| |-++....
T Consensus 13 t~G~t~i~~d~~gefi~tcgsd--g~ir~~~~~s-d~e~P~ti~~-~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~ 88 (933)
T KOG1274|consen 13 TGGLTLICYDPDGEFICTCGSD--GDIRKWKTNS-DEEEPETIDI-SGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEE 88 (933)
T ss_pred cCceEEEEEcCCCCEEEEecCC--CceEEeecCC-cccCCchhhc-cCceeEEEeecccceEEeeccceEEEeeCCCCCc
Confidence 34455666777775 5555554 2221111111 1134555543 467899999999988888888875 44444332
Q ss_pred CCCCccceeccccCCcEEEEEeCCCcceEEecCCcEEEEeCCCCCCceeeeee------cC--CceeEEEE--eCCcEEE
Q 001480 382 KSGSTPLKFHRKIKLHVVSIAAGMVHSTALTEDGALFYWASSDPDLRCQQLYS------MC--GRNVVSIS--AGKYWTA 451 (1071)
Q Consensus 382 ~~~~~p~~~~~~~~~~I~~Ia~G~~hslaLt~dG~Vy~WG~n~~~~~p~~v~~------l~--g~~Vv~Ia--aG~~htl 451 (1071)
.....++.++ .++ +++.-+|+..+.|+.+..+....... +. ...|..|. .-..+.+
T Consensus 89 ~~iL~Rftlp----~r~----------~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLA 154 (933)
T KOG1274|consen 89 DTILARFTLP----IRD----------LAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLA 154 (933)
T ss_pred cceeeeeecc----ceE----------EEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEE
Confidence 2222232222 222 23444555555565553322221111 11 12344444 3445667
Q ss_pred EEeeCCcEEEecCCC
Q 001480 452 AVTATGDVYMWDGKK 466 (1071)
Q Consensus 452 aLT~dG~Vy~WG~N~ 466 (1071)
+.+-||+|++|.-..
T Consensus 155 vss~dG~v~iw~~~~ 169 (933)
T KOG1274|consen 155 VSSCDGKVQIWDLQD 169 (933)
T ss_pred EEecCceEEEEEccc
Confidence 778899999997543
No 176
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=66.44 E-value=42 Score=44.80 Aligned_cols=141 Identities=18% Similarity=0.219 Sum_probs=73.1
Q ss_pred eeEEecCCcEEEEeCCCCCCcCCCCCCCCCcccceeeeccCCCCEEEEEecCCeEEEEeeCCcEEEEecCCCCCCCccce
Q 001480 310 TAVVSESGEVFTWGCNREGQLGYGTSNSASNYTPRVVESLKGKDLVGVAAAKYHTIVLGADGERVIVARNLKKSGSTPLK 389 (1071)
Q Consensus 310 SlaLT~dG~VY~WG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~I~~IaaG~~htlaLt~dG~Vy~wG~n~~~~~~~p~~ 389 (1071)
-+.+|.|+++|.|-.|+.+++-.-+.-+.....-..|..-.|.-+-. -.|-+++..--+++..|-...........
T Consensus 92 RaWiTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~----IqhlLvvaT~~ei~ilgV~~~~~~~~~~~ 167 (1311)
T KOG1900|consen 92 RAWITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPE----IQHLLVVATPVEIVILGVSFDEFTGELSI 167 (1311)
T ss_pred ceEEEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhh----hheeEEecccceEEEEEEEeccccCcccc
Confidence 35689999999999988777654332221111111111111211212 25788888888888887543222211111
Q ss_pred ecc-----ccCCcEEEEEeCCCcceEEecCCcEEEEeCCCC----------C------------------Cceeeeee--
Q 001480 390 FHR-----KIKLHVVSIAAGMVHSTALTEDGALFYWASSDP----------D------------------LRCQQLYS-- 434 (1071)
Q Consensus 390 ~~~-----~~~~~I~~Ia~G~~hslaLt~dG~Vy~WG~n~~----------~------------------~~p~~v~~-- 434 (1071)
+.. ..+..|..|.+ +++|+||.-|.++. + +.|. +..
T Consensus 168 f~~~~~i~~dg~~V~~I~~--------t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs-~~~~~ 238 (1311)
T KOG1900|consen 168 FNTSFKISVDGVSVNCITY--------TENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPS-LLSVP 238 (1311)
T ss_pred cccceeeecCCceEEEEEe--------ccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhh-hhcCC
Confidence 110 11233444432 45566665554431 0 1222 222
Q ss_pred -cCCceeEEEEeCCcEEEE--EeeCCcEEEec
Q 001480 435 -MCGRNVVSISAGKYWTAA--VTATGDVYMWD 463 (1071)
Q Consensus 435 -l~g~~Vv~IaaG~~htla--LT~dG~Vy~WG 463 (1071)
.....|.+|+.+....+. +++.|.|-+|-
T Consensus 239 ~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~ 270 (1311)
T KOG1900|consen 239 GSSKDPIRQITIDNSRNILYVLSEKGTVSAYD 270 (1311)
T ss_pred CCCCCcceeeEeccccceeeeeccCceEEEEE
Confidence 224579999998877655 66778777774
No 177
>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC. The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].
Probab=66.35 E-value=9.8 Score=41.35 Aligned_cols=93 Identities=15% Similarity=0.199 Sum_probs=64.6
Q ss_pred CchHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccC----CCCCcHHHHHHh--cCCHHHHHHHHhcC-CCCCCC--CCCC
Q 001480 27 VQKDLCLAVREGSLADVESALALLKKNGGNINSRN----IFGLTPLHSAIW--RNQVPIVRRLLAAG-ADPDAR--DGES 97 (1071)
Q Consensus 27 g~TpLh~Aa~~G~~~~v~~lL~lLl~~GadiN~~d----~~G~TpLH~Aa~--~g~~eivk~LL~~G-Ad~n~~--d~~~ 97 (1071)
-.++|.+|..++..+++. +|+.. .+....| ..+.--+-|+.. ..+..+++++|.+| +++|.+ .-.+
T Consensus 179 A~~Am~~si~~~K~dva~----~lls~-f~ft~~dv~~~~~~~ydieY~LS~h~a~~kvL~~Fi~~Glv~vN~~F~~~NS 253 (284)
T PF06128_consen 179 AHQAMWLSIGNAKEDVAL----YLLSK-FNFTKQDVASMEKELYDIEYLLSEHSASYKVLEYFINRGLVDVNKKFQKVNS 253 (284)
T ss_pred HHHHHHHHhcccHHHHHH----HHHhh-cceecchhhhcCcchhhHHHHHhhcCCcHHHHHHHHhccccccchhhhccCC
Confidence 356788888777666666 44432 2333333 223334555543 34677899999998 677753 2257
Q ss_pred Cccccccccccccccchhhhhcccccc
Q 001480 98 GWSSLHRALHFGHLAVASVLLQSGASI 124 (1071)
Q Consensus 98 G~TpL~~A~~~g~~~vv~lLl~~Ga~v 124 (1071)
|.|-|+-|..+++.+++.+|+++||..
T Consensus 254 GdtMLDNA~Ky~~~emi~~Llk~GA~~ 280 (284)
T PF06128_consen 254 GDTMLDNAMKYKNSEMIAFLLKYGAIS 280 (284)
T ss_pred cchHHHhHHhcCcHHHHHHHHHcCccc
Confidence 999999999999999999999999854
No 178
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=63.70 E-value=60 Score=37.09 Aligned_cols=104 Identities=9% Similarity=-0.016 Sum_probs=48.3
Q ss_pred CeEEEEeeCCcEEEEecCCCCCCCccceeccccCCcEEEEE----eCCCcceEEecCCcEEEEeCCCCCC-ceeeeeecC
Q 001480 362 YHTIVLGADGERVIVARNLKKSGSTPLKFHRKIKLHVVSIA----AGMVHSTALTEDGALFYWASSDPDL-RCQQLYSMC 436 (1071)
Q Consensus 362 ~htlaLt~dG~Vy~wG~n~~~~~~~p~~~~~~~~~~I~~Ia----~G~~hslaLt~dG~Vy~WG~n~~~~-~p~~v~~l~ 436 (1071)
.|++++ -++.||++|.........-+....+....-..+. ....+..+..-+++||++|..+... .......+.
T Consensus 116 ~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~ 194 (323)
T TIGR03548 116 NGSACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPK 194 (323)
T ss_pred CceEEE-ECCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecC
Confidence 344444 5789999987532211111111111111122221 1122334445678999999654221 111223333
Q ss_pred CceeEEEEe---C------CcEEEEEeeCCcEEEecCCC
Q 001480 437 GRNVVSISA---G------KYWTAAVTATGDVYMWDGKK 466 (1071)
Q Consensus 437 g~~Vv~Iaa---G------~~htlaLT~dG~Vy~WG~N~ 466 (1071)
......+.. + ..++.+...++++|++|+..
T Consensus 195 ~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~ 233 (323)
T TIGR03548 195 KNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFN 233 (323)
T ss_pred CCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcC
Confidence 334444432 1 12333444578999999765
No 179
>PF12065 DUF3545: Protein of unknown function (DUF3545); InterPro: IPR021932 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 60 to 77 amino acids in length. This protein has two completely conserved residues (R and L) that may be functionally important.
Probab=61.11 E-value=7.6 Score=33.42 Aligned_cols=31 Identities=16% Similarity=0.410 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHhhhHHHHHHHHHHcCCCcc
Q 001480 702 RALRKKLQQIEMLEVKLSNGHILDEQQIAKLQTKSVLERSLAELGVPIE 750 (1071)
Q Consensus 702 r~l~kkl~~ie~l~~k~~~g~~l~~~q~~k~~~~~~~~~~l~~l~~~~~ 750 (1071)
++-+.|-|+||+||.|+ .|++||.+|++-.|
T Consensus 21 k~~KRKWREIEAikDr~------------------rL~kEL~d~D~~~d 51 (59)
T PF12065_consen 21 KPKKRKWREIEAIKDRQ------------------RLRKELQDMDMCFD 51 (59)
T ss_pred CccchhHHHHHHHHHHH------------------HHHHHHHHcccccc
Confidence 35678999999998875 58999999988776
No 180
>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC. The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].
Probab=57.92 E-value=15 Score=40.09 Aligned_cols=45 Identities=24% Similarity=0.245 Sum_probs=37.7
Q ss_pred HHHHHHhCC-CCCccc---CCCCCcHHHHHHhcCCHHHHHHHHhcCCCC
Q 001480 46 ALALLKKNG-GNINSR---NIFGLTPLHSAIWRNQVPIVRRLLAAGADP 90 (1071)
Q Consensus 46 lL~lLl~~G-adiN~~---d~~G~TpLH~Aa~~g~~eivk~LL~~GAd~ 90 (1071)
+|+.++.+| +++|.+ -..|.|-|--|..+++.+++.+||++||-.
T Consensus 232 vL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~~ 280 (284)
T PF06128_consen 232 VLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGAIS 280 (284)
T ss_pred HHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCccc
Confidence 334788888 788853 467999999999999999999999999843
No 181
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=57.00 E-value=2.4e+02 Score=36.93 Aligned_cols=151 Identities=10% Similarity=0.042 Sum_probs=77.6
Q ss_pred EcCCceeEEecCCcEEEEeCCCCCCcCCCCCCCCCcccceeeeccCCCCEEEEEec-----CCeEEEEeeCCcEEEEecC
Q 001480 305 AANKHTAVVSESGEVFTWGCNREGQLGYGTSNSASNYTPRVVESLKGKDLVGVAAA-----KYHTIVLGADGERVIVARN 379 (1071)
Q Consensus 305 cG~~HSlaLT~dG~VY~WG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~I~~IaaG-----~~htlaLt~dG~Vy~wG~n 379 (1071)
...++.+++|+.|++|..-...--..+.... -......+....+.+|+.+.+- ..+.+++|.+|.+...-.+
T Consensus 544 ~t~d~LllfTs~Grv~~l~~~~IP~~~r~~~---G~~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi~l~ 620 (800)
T TIGR01063 544 STHDYLLFFTNRGKVYWLKVYQIPEASRTAK---GKPIVNLLPLQPDERITAILSVKEFDDGLYLFFATKNGVVKKTSLT 620 (800)
T ss_pred cCCCeEEEEeCCCcEEEEEhhhCcCCCcCCC---CcCHHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEEEEhH
Confidence 3444567789999999984332212111110 0111112333356677776662 2357788889987765432
Q ss_pred CCC----CCCccceeccccCCcEEEEEeC--CCcceEEecCCcEEEEeCCC--------CCCceeeeeecCCceeEEEEe
Q 001480 380 LKK----SGSTPLKFHRKIKLHVVSIAAG--MVHSTALTEDGALFYWASSD--------PDLRCQQLYSMCGRNVVSISA 445 (1071)
Q Consensus 380 ~~~----~~~~p~~~~~~~~~~I~~Ia~G--~~hslaLt~dG~Vy~WG~n~--------~~~~p~~v~~l~g~~Vv~Iaa 445 (1071)
... .+.....+. .+..++.+... ..+.+++|++|++|.+-..+ .+... +..-.+..|+.+.+
T Consensus 621 ~~~~~~r~G~~aiklk--e~D~lv~v~~~~~~d~lll~Ts~Gr~~r~~v~eIp~~gr~~~Gv~~--i~L~~~E~Vv~~~~ 696 (800)
T TIGR01063 621 EFSNIRSNGIIAIKLD--DGDELISVRLTSGDDEVMLGSKNGKAVRFPEEDVRPMGRAARGVRG--IKLKNEDFVVSLLV 696 (800)
T ss_pred HhhhhccCCcccccCC--CCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCCcCCCCCCeec--ccCCCCCEEEEEEE
Confidence 111 111111111 23345444333 34588999999999875432 11111 11123455666554
Q ss_pred --CCcEEEEEeeCCcEEEe
Q 001480 446 --GKYWTAAVTATGDVYMW 462 (1071)
Q Consensus 446 --G~~htlaLT~dG~Vy~W 462 (1071)
...+.+++|+.|.+.-.
T Consensus 697 v~~~~~ll~vT~~G~~Kr~ 715 (800)
T TIGR01063 697 VSEESYLLIVTENGYGKRT 715 (800)
T ss_pred eccccEEEEEecCCcEEEE
Confidence 23356778888866655
No 182
>PLN02153 epithiospecifier protein
Probab=55.99 E-value=3.7e+02 Score=30.92 Aligned_cols=58 Identities=12% Similarity=0.219 Sum_probs=31.2
Q ss_pred CcceEEecCCcEEEEeCCCC----------CCceeeeeecCCceeEEEEe-C------CcEEEEEeeCCcEEEecCC
Q 001480 406 VHSTALTEDGALFYWASSDP----------DLRCQQLYSMCGRNVVSISA-G------KYWTAAVTATGDVYMWDGK 465 (1071)
Q Consensus 406 ~hslaLt~dG~Vy~WG~n~~----------~~~p~~v~~l~g~~Vv~Iaa-G------~~htlaLT~dG~Vy~WG~N 465 (1071)
.|++++ -+|++|++|.... ......+..+.......+.. | ..|++++ -++++|++|+.
T Consensus 186 ~~~~~~-~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~-~~~~iyv~GG~ 260 (341)
T PLN02153 186 GAGFAV-VQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHAV-VGKYIIIFGGE 260 (341)
T ss_pred cceEEE-ECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeeeEE-ECCEEEEECcc
Confidence 344444 5779999864321 01122333444445555542 1 2355544 46899999985
No 183
>PRK05560 DNA gyrase subunit A; Validated
Probab=55.11 E-value=2.4e+02 Score=37.03 Aligned_cols=151 Identities=12% Similarity=0.095 Sum_probs=79.7
Q ss_pred EcCCceeEEecCCcEEEEeCCCCCCcCCCCCCCCCcccceeeeccCCCCEEEEEecC-----CeEEEEeeCCcEEEEecC
Q 001480 305 AANKHTAVVSESGEVFTWGCNREGQLGYGTSNSASNYTPRVVESLKGKDLVGVAAAK-----YHTIVLGADGERVIVARN 379 (1071)
Q Consensus 305 cG~~HSlaLT~dG~VY~WG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~I~~IaaG~-----~htlaLt~dG~Vy~wG~n 379 (1071)
....+.+++|+.|++|..-...--..+..... ...-..+....+.+|+.+.+.. ...+++|.+|.+...-..
T Consensus 546 ~t~d~LllfTs~Grv~~l~v~~iP~~~~~~~G---~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~ 622 (805)
T PRK05560 546 STHDTLLFFTNRGRVYRLKVYEIPEASRTARG---RPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSLS 622 (805)
T ss_pred cCCCeEEEEecCCeEEEEEhhhCcCCCcCCCC---eEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEhH
Confidence 34455678899999999865532222211100 1111123334567787777654 357888899987665322
Q ss_pred CCC----CCCccceeccccCCcEEEEEeC--CCcceEEecCCcEEEEeCCC--------CCCceeeeeecCCceeEEEEe
Q 001480 380 LKK----SGSTPLKFHRKIKLHVVSIAAG--MVHSTALTEDGALFYWASSD--------PDLRCQQLYSMCGRNVVSISA 445 (1071)
Q Consensus 380 ~~~----~~~~p~~~~~~~~~~I~~Ia~G--~~hslaLt~dG~Vy~WG~n~--------~~~~p~~v~~l~g~~Vv~Iaa 445 (1071)
... .+.....+. .+..++.+... ..+.+++|++|++|.+-..+ .+.....+ -.+..|+.+.+
T Consensus 623 ~~~~~~r~G~~~ikLk--e~D~lv~v~~~~~~d~lll~T~~Gr~~r~~~~eIp~~gr~~~Gv~~i~L--~~~E~Vv~~~~ 698 (805)
T PRK05560 623 EFSNIRSNGIIAINLD--EGDELIGVRLTDGDDDILLATKNGKAIRFPESDVRPMGRTARGVRGIKL--REGDEVVSMDV 698 (805)
T ss_pred HhhhcccCCceeeccC--CCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCccCcccCCcccccC--CCCCEEEEEEE
Confidence 111 111111221 23345444443 34588999999999875432 11111111 23455666654
Q ss_pred CC---cEEEEEeeCCcEEEe
Q 001480 446 GK---YWTAAVTATGDVYMW 462 (1071)
Q Consensus 446 G~---~htlaLT~dG~Vy~W 462 (1071)
.. .+.+++|+.|.+.-.
T Consensus 699 v~~~~~~il~vTk~G~iKr~ 718 (805)
T PRK05560 699 VREDSQEILTVTENGYGKRT 718 (805)
T ss_pred EcCCCcEEEEEEeCCeEEEE
Confidence 32 257778888866554
No 184
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=53.17 E-value=1.3e+02 Score=35.57 Aligned_cols=111 Identities=19% Similarity=0.209 Sum_probs=58.1
Q ss_pred cEEEEEeCCCcceEEe--cCCcEEEEeCCCCCCceeeeeecCCce-eEEEEeCCcEEEEE--eeCCcEEEecCCCCCCCC
Q 001480 397 HVVSIAAGMVHSTALT--EDGALFYWASSDPDLRCQQLYSMCGRN-VVSISAGKYWTAAV--TATGDVYMWDGKKSKDNP 471 (1071)
Q Consensus 397 ~I~~Ia~G~~hslaLt--~dG~Vy~WG~n~~~~~p~~v~~l~g~~-Vv~IaaG~~htlaL--T~dG~Vy~WG~N~~~~~~ 471 (1071)
.|..++...+.-++|. .+..+..|-..+.-+.....-.-.+.. |.+-..|.+..++. .+|++||+|-.-.+.
T Consensus 397 ~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgk--- 473 (519)
T KOG0293|consen 397 PITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGK--- 473 (519)
T ss_pred ceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCc---
Confidence 5666666554444444 677889998664322111111111222 33344455544444 478999999754432
Q ss_pred CceEEecCcc-cEEEEEec--CCeEEEEEeCCCCccCCCCCCC
Q 001480 472 PLVTRLHGIK-KATSVSVG--ETHLLIVGSLYHPIYPPNVAKN 511 (1071)
Q Consensus 472 ~~p~~v~g~~-~V~~Va~G--~~HtlaL~s~~~~v~~wG~~~~ 511 (1071)
....++|.. .|--|+-. .-|++|-+++++++--||....
T Consensus 474 -ll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 474 -LLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred -eeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence 223344432 22222222 3456666777787777876543
No 185
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=52.43 E-value=7.2e+02 Score=33.24 Aligned_cols=87 Identities=14% Similarity=0.098 Sum_probs=53.1
Q ss_pred EEEEeeCCcEEEEecCCCCCCCccceeccccCCcEEEEEeCC----CcceEEecCCcEEEEeCCCCCCceeeeeecCCce
Q 001480 364 TIVLGADGERVIVARNLKKSGSTPLKFHRKIKLHVVSIAAGM----VHSTALTEDGALFYWASSDPDLRCQQLYSMCGRN 439 (1071)
Q Consensus 364 tlaLt~dG~Vy~wG~n~~~~~~~p~~~~~~~~~~I~~Ia~G~----~hslaLt~dG~Vy~WG~n~~~~~p~~v~~l~g~~ 439 (1071)
.++-+.+|.+|..-.+...... .+++..-. .+.-+..+. .+.+.|+.+|++|+=+ ..+ ..+
T Consensus 549 ~~~q~~~G~v~~~~~~~~~~~~--~~fp~~c~-~~~~~~~~~~~~~~~~~GLs~~~~Ly~n~--------~~l----a~~ 613 (928)
T PF04762_consen 549 LYIQTNDGKVFQLSSDGELSQI--VKFPQPCP-WMEVCQINGSEDKRVLFGLSSNGRLYANS--------RLL----ASN 613 (928)
T ss_pred EEEEECCCEEEEeecCCCcccc--ccCCCCCc-EEEEEEECCccceeEEEEECCCCEEEECC--------EEE----ecC
Confidence 5667889999965433211111 22222111 233333333 3688899999999622 111 256
Q ss_pred eEEEEeCCcEEEEEeeCCcEEEecCC
Q 001480 440 VVSISAGKYWTAAVTATGDVYMWDGK 465 (1071)
Q Consensus 440 Vv~IaaG~~htlaLT~dG~Vy~WG~N 465 (1071)
++++.....|-++.|....+.+.--+
T Consensus 614 ~tSF~v~~~~Ll~TT~~h~l~fv~L~ 639 (928)
T PF04762_consen 614 CTSFAVTDSFLLFTTTQHTLKFVHLN 639 (928)
T ss_pred CceEEEEcCEEEEEecCceEEEEECc
Confidence 88888889998888888888887666
No 186
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=51.77 E-value=4.6e+02 Score=30.78 Aligned_cols=57 Identities=14% Similarity=0.059 Sum_probs=28.7
Q ss_pred CCcceEEecCCcEEEEeCCCCCCceeeeeecCCce-eEEEEeCCcEEEEEeeCCcEEEec
Q 001480 405 MVHSTALTEDGALFYWASSDPDLRCQQLYSMCGRN-VVSISAGKYWTAAVTATGDVYMWD 463 (1071)
Q Consensus 405 ~~hslaLt~dG~Vy~WG~n~~~~~p~~v~~l~g~~-Vv~IaaG~~htlaLT~dG~Vy~WG 463 (1071)
....++.+.+|.||+.-..+....-.. .+.+.. ...-.....+.++.+.+|.||++.
T Consensus 335 ~g~l~v~~~~G~l~~ld~~tG~~~~~~--~~~~~~~~s~P~~~~~~l~v~t~~G~l~~~~ 392 (394)
T PRK11138 335 NGYLVVGDSEGYLHWINREDGRFVAQQ--KVDSSGFLSEPVVADDKLLIQARDGTVYAIT 392 (394)
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEE--EcCCCcceeCCEEECCEEEEEeCCceEEEEe
Confidence 344556667777777654432221111 011111 111112235778888999999874
No 187
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=51.64 E-value=47 Score=36.21 Aligned_cols=70 Identities=24% Similarity=0.251 Sum_probs=44.3
Q ss_pred CceeEEEEeCCcEEEEEeeCCcEEEecCCCCCCCCCc----eEEe-------cCcccEEEEEecCCeEEEEEeCCCCccC
Q 001480 437 GRNVVSISAGKYWTAAVTATGDVYMWDGKKSKDNPPL----VTRL-------HGIKKATSVSVGETHLLIVGSLYHPIYP 505 (1071)
Q Consensus 437 g~~Vv~IaaG~~htlaLT~dG~Vy~WG~N~~~~~~~~----p~~v-------~g~~~V~~Va~G~~HtlaL~s~~~~v~~ 505 (1071)
+.+++.+.|-..+.++||.+|.+|+|.-...+...+. |..- .....|+.+........+|+-..+..|.
T Consensus 12 gs~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~ 91 (219)
T PF07569_consen 12 GSPVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYS 91 (219)
T ss_pred CCceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEE
Confidence 4678889999999999999999999986664321111 1110 2234677766665555555444455564
Q ss_pred C
Q 001480 506 P 506 (1071)
Q Consensus 506 w 506 (1071)
|
T Consensus 92 y 92 (219)
T PF07569_consen 92 Y 92 (219)
T ss_pred e
Confidence 4
No 188
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=50.65 E-value=1.8e+02 Score=36.79 Aligned_cols=103 Identities=19% Similarity=0.270 Sum_probs=59.6
Q ss_pred EEecCceEEEEEcCCcEEEEeCCCCCCcCCCCCCCCCcceeeccCcccEEEEEEcCCceeEEecCCc-EEEEeCCCCCCc
Q 001480 252 IAAAKHHTVLATEGGEVFTWGSNREGQLGYTSVDTQPTPRRVSSLKLKIIAVAAANKHTAVVSESGE-VFTWGCNREGQL 330 (1071)
Q Consensus 252 IAcG~~HslaLT~dG~VyswG~N~~GQLG~g~~~~~~~P~~V~~l~~~Iv~VacG~~HSlaLT~dG~-VY~WG~N~~GQL 330 (1071)
|+.|..|-+++. ||.|-.|..|-- .+ +..+|..|+...+-++++|..++ |-.| |=|.
T Consensus 138 vSVGsQHDMIVn----v~dWr~N~~~as-----------nk---iss~Vsav~fsEdgSYfvT~gnrHvk~w----yl~~ 195 (1080)
T KOG1408|consen 138 VSVGSQHDMIVN----VNDWRVNSSGAS-----------NK---ISSVVSAVAFSEDGSYFVTSGNRHVKLW----YLQI 195 (1080)
T ss_pred EeeccccceEEE----hhhhhhcccccc-----------cc---cceeEEEEEEccCCceeeeeeeeeEEEE----Eeec
Confidence 456899998885 888987755420 11 12356666666666666665432 3333 1111
Q ss_pred CCCCCCCCCcccceee---eccCCCCEEEEEecCC----eEEEEeeCCcEEEEec
Q 001480 331 GYGTSNSASNYTPRVV---ESLKGKDLVGVAAAKY----HTIVLGADGERVIVAR 378 (1071)
Q Consensus 331 G~g~~~~~~~~~P~~V---~~l~~~~I~~IaaG~~----htlaLt~dG~Vy~wG~ 378 (1071)
+. ........|-+- ..+....+..|+||.. .++++|..|.+.-|..
T Consensus 196 ~~--KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSs 248 (1080)
T KOG1408|consen 196 QS--KYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSS 248 (1080)
T ss_pred cc--cccCCccccchhhhccccccchhhhhhhcCcccccceEEEecccceeeech
Confidence 11 111112222221 2233456788999987 9999999999887754
No 189
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=49.40 E-value=3.6e+02 Score=36.60 Aligned_cols=203 Identities=18% Similarity=0.204 Sum_probs=97.0
Q ss_pred EEEecCCcEEEEecCCCCCCCCCCCccCCCCcceeeeeeeecCCCCCCEEEEEecCceEEEEEcCCcEEEEeCCC-CCCc
Q 001480 201 VAVTSLGEVYTWGYGRGGRLGHPDFDIHSGQAAVITPRRVTSGLGSRRVKTIAAAKHHTVLATEGGEVFTWGSNR-EGQL 279 (1071)
Q Consensus 201 laLT~dG~Vy~WG~N~~GQLG~g~~~~~s~~~~v~~P~~V~~~l~~~~Iv~IAcG~~HslaLT~dG~VyswG~N~-~GQL 279 (1071)
+-+|.|++||.|-.++.+++..-+.- ... +..-..|. +-.+.-+-.| .|.++|..--.|+..|-.. .++.
T Consensus 93 aWiTiDn~L~lWny~~~~e~~~~d~~---sht-Il~V~Lvk-PkpgvFv~~I----qhlLvvaT~~ei~ilgV~~~~~~~ 163 (1311)
T KOG1900|consen 93 AWITIDNNLFLWNYESDNELAEYDGL---SHT-ILKVGLVK-PKPGVFVPEI----QHLLVVATPVEIVILGVSFDEFTG 163 (1311)
T ss_pred eEEEeCCeEEEEEcCCCCccccccch---hhh-heeeeeec-CCCCcchhhh----heeEEecccceEEEEEEEeccccC
Confidence 45889999999999987776543210 011 11111111 1122222222 4899999888899888443 2222
Q ss_pred CCCCCCCCCcceeeccCcccEEEEEEcCCceeEEecCCcEEEEeCCC-------------CCC-cCCC--CCCCCCcccc
Q 001480 280 GYTSVDTQPTPRRVSSLKLKIIAVAAANKHTAVVSESGEVFTWGCNR-------------EGQ-LGYG--TSNSASNYTP 343 (1071)
Q Consensus 280 G~g~~~~~~~P~~V~~l~~~Iv~VacG~~HSlaLT~dG~VY~WG~N~-------------~GQ-LG~g--~~~~~~~~~P 343 (1071)
+...+... -.|..-+..|..|++ |++|+||.-|.+. +++ +-.- +........|
T Consensus 164 ~~~~f~~~---~~i~~dg~~V~~I~~--------t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvP 232 (1311)
T KOG1900|consen 164 ELSIFNTS---FKISVDGVSVNCITY--------TENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVP 232 (1311)
T ss_pred cccccccc---eeeecCCceEEEEEe--------ccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhh
Confidence 22211111 111111122333333 5666666665442 222 0000 0000123445
Q ss_pred eeeecc--CCCCEEEEEecCCeEEE--EeeCCcE--EEEecCCCCC-CC------------cc--ceeccccCCcEEEEE
Q 001480 344 RVVESL--KGKDLVGVAAAKYHTIV--LGADGER--VIVARNLKKS-GS------------TP--LKFHRKIKLHVVSIA 402 (1071)
Q Consensus 344 ~~V~~l--~~~~I~~IaaG~~htla--Lt~dG~V--y~wG~n~~~~-~~------------~p--~~~~~~~~~~I~~Ia 402 (1071)
.....+ ....|.+|+.+....+. +++.|.+ |..|.|.-.. .. .. ..+....-..|++|.
T Consensus 233 s~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~G~~~~r~~~~~~~~i~~qa~~~~~~~~~s~f~~IvsI~ 312 (1311)
T KOG1900|consen 233 SLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGNGLGGPRFVSVSRNYIDVQALSLKNPLDDSVFFSIVSIS 312 (1311)
T ss_pred hhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccCCCccceeeeehhHHHHHHHhhhccccCCCcccceeEEec
Confidence 533322 35589999998876654 4556664 4445431100 00 00 001111112455554
Q ss_pred e------CCCcceEEecCC-cEEEEeCC
Q 001480 403 A------GMVHSTALTEDG-ALFYWASS 423 (1071)
Q Consensus 403 ~------G~~hslaLt~dG-~Vy~WG~n 423 (1071)
. -+-|.+|+|..| ++|.-|+.
T Consensus 313 ~l~~~es~~l~LvA~ts~GvRlYfs~s~ 340 (1311)
T KOG1900|consen 313 PLSASESNDLHLVAITSTGVRLYFSTSS 340 (1311)
T ss_pred ccCcccccceeEEEEecCCeEEEEeccC
Confidence 3 457889999998 57776653
No 190
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=47.71 E-value=5e+02 Score=30.07 Aligned_cols=251 Identities=11% Similarity=0.073 Sum_probs=122.0
Q ss_pred cCCceeccCC----CceEEEEecCCceEEEEecCCcEEEEecCCCCCCCCCCCccCCCCcceeeeeeeecCCCCCCEEEE
Q 001480 177 KLPCKVDSLH----GFVIKLISAAKFHSVAVTSLGEVYTWGYGRGGRLGHPDFDIHSGQAAVITPRRVTSGLGSRRVKTI 252 (1071)
Q Consensus 177 ~~P~~V~~l~----~~~I~~Va~G~~HslaLT~dG~Vy~WG~N~~GQLG~g~~~~~s~~~~v~~P~~V~~~l~~~~Iv~I 252 (1071)
..|+.++.+. ...|+.||+.+-+.+-=.+|-++..+-.-..-|+|.-.. +. ...+-......+
T Consensus 29 ~~~~l~~lF~~~aH~~sitavAVs~~~~aSGssDetI~IYDm~k~~qlg~ll~--Ha---gsitaL~F~~~~-------- 95 (362)
T KOG0294|consen 29 VKPTLKPLFAFSAHAGSITALAVSGPYVASGSSDETIHIYDMRKRKQLGILLS--HA---GSITALKFYPPL-------- 95 (362)
T ss_pred cceeeeccccccccccceeEEEecceeEeccCCCCcEEEEeccchhhhcceec--cc---cceEEEEecCCc--------
Confidence 3555554332 346888888877776666777888887777777775321 11 111111111011
Q ss_pred EecCceEEEEEcCCcEEEEeCCCCCCcCCCCCCCCCcceeeccCcccEEEEEEcCCceeE--EecCCcEEEEeCCCCCCc
Q 001480 253 AAAKHHTVLATEGGEVFTWGSNREGQLGYTSVDTQPTPRRVSSLKLKIIAVAAANKHTAV--VSESGEVFTWGCNREGQL 330 (1071)
Q Consensus 253 AcG~~HslaLT~dG~VyswG~N~~GQLG~g~~~~~~~P~~V~~l~~~Iv~VacG~~HSla--LT~dG~VY~WG~N~~GQL 330 (1071)
..+|-+.-.+||.+..|-...+-.++ -+..-..+|..|++=-.--+| +-.|+.+-.|-.- .|.-
T Consensus 96 --S~shLlS~sdDG~i~iw~~~~W~~~~-----------slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV-~Gr~ 161 (362)
T KOG0294|consen 96 --SKSHLLSGSDDGHIIIWRVGSWELLK-----------SLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLV-RGRV 161 (362)
T ss_pred --chhheeeecCCCcEEEEEcCCeEEee-----------eecccccccceeEecCCCceEEEEcCCceeeeehhh-cCcc
Confidence 12377778889999888765542221 111112346666654444444 3456666677322 1111
Q ss_pred CCCCCCCCCcccceeeeccCCCCEEEEEecCCeEEEEeeCCcEEEEecCCCCCCCccceeccccCCcEEEEEeCCCcceE
Q 001480 331 GYGTSNSASNYTPRVVESLKGKDLVGVAAAKYHTIVLGADGERVIVARNLKKSGSTPLKFHRKIKLHVVSIAAGMVHSTA 410 (1071)
Q Consensus 331 G~g~~~~~~~~~P~~V~~l~~~~I~~IaaG~~htlaLt~dG~Vy~wG~n~~~~~~~p~~~~~~~~~~I~~Ia~G~~hsla 410 (1071)
+. .......+..|.. ..-|.+|++.+...=.+|..+.. .+........++..+-+++...++
T Consensus 162 a~---v~~L~~~at~v~w--------~~~Gd~F~v~~~~~i~i~q~d~A-------~v~~~i~~~~r~l~~~~l~~~~L~ 223 (362)
T KOG0294|consen 162 AF---VLNLKNKATLVSW--------SPQGDHFVVSGRNKIDIYQLDNA-------SVFREIENPKRILCATFLDGSELL 223 (362)
T ss_pred ce---eeccCCcceeeEE--------cCCCCEEEEEeccEEEEEecccH-------hHhhhhhccccceeeeecCCceEE
Confidence 10 0000112222322 22344454444322223333221 111111122456666777666665
Q ss_pred Ee-cCCcEEEEeCCCCCCceeeeeecCCceeEEEEeC--CcEEEEE--eeCCcEEEecCCCCCCCCCce
Q 001480 411 LT-EDGALFYWASSDPDLRCQQLYSMCGRNVVSISAG--KYWTAAV--TATGDVYMWDGKKSKDNPPLV 474 (1071)
Q Consensus 411 Lt-~dG~Vy~WG~n~~~~~p~~v~~l~g~~Vv~IaaG--~~htlaL--T~dG~Vy~WG~N~~~~~~~~p 474 (1071)
+- +|+.+-.|-.++ ..|......-..+|..|..- ..|.+++ .+||.+-+|...-.....|.+
T Consensus 224 vG~d~~~i~~~D~ds--~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~ 290 (362)
T KOG0294|consen 224 VGGDNEWISLKDTDS--DTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKKRPTL 290 (362)
T ss_pred EecCCceEEEeccCC--CccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccccccCCcce
Confidence 54 345566666554 22222222223467777643 3455554 589999999866554444443
No 191
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=46.76 E-value=21 Score=31.27 Aligned_cols=44 Identities=25% Similarity=0.289 Sum_probs=36.1
Q ss_pred cchhHHHHHHHHHHhhc-CCCcccHHHHHHHHHhcCchhHHHHHH
Q 001480 551 RLAPSLKSLCENVAAQC-LVEPRNALQLLEISDSLGADDLKKHCE 594 (1071)
Q Consensus 551 y~~~~LK~lCE~~l~~~-~v~~~nv~~il~lA~~~~~~~Lk~~C~ 594 (1071)
.....++.+++..+... .++..++..++.+|+.++.+.|.+.|.
T Consensus 46 ~~~~~f~~~l~~ly~~~~~~~~~~~~~l~~~a~~~~~~~l~~~c~ 90 (90)
T smart00225 46 VSPEDFRALLEFLYTGKLDLPEENVEELLELADYLQIPGLVELCE 90 (90)
T ss_pred CCHHHHHHHHHeecCceeecCHHHHHHHHHHHHHHCcHHHHhhhC
Confidence 55677778888877776 456678999999999999999999993
No 192
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=46.70 E-value=3.9e+02 Score=31.30 Aligned_cols=18 Identities=22% Similarity=0.130 Sum_probs=12.9
Q ss_pred CeEEEEeeCCcEEEEecC
Q 001480 362 YHTIVLGADGERVIVARN 379 (1071)
Q Consensus 362 ~htlaLt~dG~Vy~wG~n 379 (1071)
.|+.+...++.||++|..
T Consensus 131 ~~~~~~~~~~~IYv~GG~ 148 (376)
T PRK14131 131 GHVAVSLHNGKAYITGGV 148 (376)
T ss_pred ceEEEEeeCCEEEEECCC
Confidence 355555478999999864
No 193
>PLN02193 nitrile-specifier protein
Probab=45.15 E-value=6.5e+02 Score=30.61 Aligned_cols=16 Identities=25% Similarity=0.488 Sum_probs=11.7
Q ss_pred ceEEEEecCCcEEEEec
Q 001480 198 FHSVAVTSLGEVYTWGY 214 (1071)
Q Consensus 198 ~HslaLT~dG~Vy~WG~ 214 (1071)
.|++++. ++.||++|-
T Consensus 168 ~h~~~~~-~~~iyv~GG 183 (470)
T PLN02193 168 SHGIAQV-GNKIYSFGG 183 (470)
T ss_pred ccEEEEE-CCEEEEECC
Confidence 4776654 578999984
No 194
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=43.04 E-value=1.7e+02 Score=33.34 Aligned_cols=139 Identities=21% Similarity=0.242 Sum_probs=75.6
Q ss_pred CCceEEEEecCCcEEEEecCCCCCCCCCCCccCCCCcceeeeeeeecCCCCCCEEEEEe--c-CceEEEEEcCCcEEEEe
Q 001480 196 AKFHSVAVTSLGEVYTWGYGRGGRLGHPDFDIHSGQAAVITPRRVTSGLGSRRVKTIAA--A-KHHTVLATEGGEVFTWG 272 (1071)
Q Consensus 196 G~~HslaLT~dG~Vy~WG~N~~GQLG~g~~~~~s~~~~v~~P~~V~~~l~~~~Iv~IAc--G-~~HslaLT~dG~VyswG 272 (1071)
+.-|-++...||.||.-+... |.+|+-+- .+ ..++.+.. | .-|.+++..||..|.+-
T Consensus 62 ~ap~dvapapdG~VWft~qg~-gaiGhLdP--~t-----------------Gev~~ypLg~Ga~Phgiv~gpdg~~Witd 121 (353)
T COG4257 62 SAPFDVAPAPDGAVWFTAQGT-GAIGHLDP--AT-----------------GEVETYPLGSGASPHGIVVGPDGSAWITD 121 (353)
T ss_pred CCccccccCCCCceEEecCcc-ccceecCC--CC-----------------CceEEEecCCCCCCceEEECCCCCeeEec
Confidence 466888999999999866433 44444321 11 12333332 2 23888888999998874
Q ss_pred CC-CCCCcCCCCCCCCCcceeeccCcccEEEEEEcCCceeEEecCCcEEEEeCC-CCCCcCCCCCCCCCcccceeeeccC
Q 001480 273 SN-REGQLGYTSVDTQPTPRRVSSLKLKIIAVAAANKHTAVVSESGEVFTWGCN-REGQLGYGTSNSASNYTPRVVESLK 350 (1071)
Q Consensus 273 ~N-~~GQLG~g~~~~~~~P~~V~~l~~~Iv~VacG~~HSlaLT~dG~VY~WG~N-~~GQLG~g~~~~~~~~~P~~V~~l~ 350 (1071)
.. .-+.++..+.... .+... .+-+-++-.+.+++..|.||..|.+ .||.|--.... |..+.
T Consensus 122 ~~~aI~R~dpkt~evt-------~f~lp-~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~---------i~vfp 184 (353)
T COG4257 122 TGLAIGRLDPKTLEVT-------RFPLP-LEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNV---------ISVFP 184 (353)
T ss_pred CcceeEEecCcccceE-------Eeecc-cccCCCcccceeeCCCccEEEeeccccceecCcccCc---------eeeec
Confidence 33 2222221111110 11101 2234456678999999999999875 23443221111 11110
Q ss_pred CCCEEEEEecCCeEEEEeeCCcEEEE
Q 001480 351 GKDLVGVAAAKYHTIVLGADGERVIV 376 (1071)
Q Consensus 351 ~~~I~~IaaG~~htlaLt~dG~Vy~w 376 (1071)
. =.-+.-+.++.|-||+||.-
T Consensus 185 a-----PqG~gpyGi~atpdGsvwya 205 (353)
T COG4257 185 A-----PQGGGPYGICATPDGSVWYA 205 (353)
T ss_pred c-----CCCCCCcceEECCCCcEEEE
Confidence 0 01245677889999999986
No 195
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=42.30 E-value=4.4e+02 Score=33.67 Aligned_cols=27 Identities=19% Similarity=0.319 Sum_probs=22.9
Q ss_pred ccEEEEEEcCC----ceeEEecCCcEEEEeC
Q 001480 298 LKIIAVAAANK----HTAVVSESGEVFTWGC 324 (1071)
Q Consensus 298 ~~Iv~VacG~~----HSlaLT~dG~VY~WG~ 324 (1071)
..+..|+||.. .+++||..|.+.-|-.
T Consensus 218 n~f~avaCg~gicAestfait~qGhLvEFSs 248 (1080)
T KOG1408|consen 218 NEFLAVACGVGICAESTFAITAQGHLVEFSS 248 (1080)
T ss_pred chhhhhhhcCcccccceEEEecccceeeech
Confidence 46889999988 9999999999887753
No 196
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=42.16 E-value=3e+02 Score=32.90 Aligned_cols=107 Identities=18% Similarity=0.230 Sum_probs=54.3
Q ss_pred CEEEEEecCCeEEEE--eeCCcEEEEecCCCCCCCcccee--ccccCCcEEEEEeCCCcceEEe--cCCcEEEEeCCCCC
Q 001480 353 DLVGVAAAKYHTIVL--GADGERVIVARNLKKSGSTPLKF--HRKIKLHVVSIAAGMVHSTALT--EDGALFYWASSDPD 426 (1071)
Q Consensus 353 ~I~~IaaG~~htlaL--t~dG~Vy~wG~n~~~~~~~p~~~--~~~~~~~I~~Ia~G~~hslaLt--~dG~Vy~WG~n~~~ 426 (1071)
.|+.++-..+.-++| ..+.++..|--.... .+.++ +.....-|.....|.+..++.. +|++||+|-.....
T Consensus 397 ~its~~iS~d~k~~LvnL~~qei~LWDl~e~~---lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgk 473 (519)
T KOG0293|consen 397 PITSFSISKDGKLALVNLQDQEIHLWDLEENK---LVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGK 473 (519)
T ss_pred ceeEEEEcCCCcEEEEEcccCeeEEeecchhh---HHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCc
Confidence 566555554444443 456677777543110 01111 1111224556666666566664 89999999875432
Q ss_pred CceeeeeecCC--ceeEEEEeCC--cEEEE-EeeCCcEEEecCCC
Q 001480 427 LRCQQLYSMCG--RNVVSISAGK--YWTAA-VTATGDVYMWDGKK 466 (1071)
Q Consensus 427 ~~p~~v~~l~g--~~Vv~IaaG~--~htla-LT~dG~Vy~WG~N~ 466 (1071)
.+..+.| ..|-.|+-.. -+.+| -.+||++-+||-..
T Consensus 474 ----ll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 474 ----LLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred ----eeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 2222332 2233333222 12222 45789999999543
No 197
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=41.38 E-value=7e+02 Score=29.90 Aligned_cols=184 Identities=10% Similarity=0.083 Sum_probs=0.0
Q ss_pred EEEcCCceeEEecC-CcEEEEeCCCCCCcCCCCCCCCCcccceeeeccCCCCEEEEEecCCeEEEEeeCCcEEEEecCCC
Q 001480 303 VAAANKHTAVVSES-GEVFTWGCNREGQLGYGTSNSASNYTPRVVESLKGKDLVGVAAAKYHTIVLGADGERVIVARNLK 381 (1071)
Q Consensus 303 VacG~~HSlaLT~d-G~VY~WG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~I~~IaaG~~htlaLt~dG~Vy~wG~n~~ 381 (1071)
++.|.+-.++-|.| |+=|.- ...|.....-.......|+.-..+.+++.+.|.+|.--..-.
T Consensus 104 wAVG~~G~IL~T~DGG~tW~~-----------------~~~~~~~~~~~~~~l~~v~f~~~~g~~vG~~G~il~T~DgG~ 166 (398)
T PLN00033 104 FLLGTRQTLLETKDGGKTWVP-----------------RSIPSAEDEDFNYRFNSISFKGKEGWIIGKPAILLHTSDGGE 166 (398)
T ss_pred EEEcCCCEEEEEcCCCCCceE-----------------CccCcccccccccceeeeEEECCEEEEEcCceEEEEEcCCCC
Q ss_pred CCCCccceeccccCCcEEEEEeCCCcceEEecCCcEEEEeCCCCCCceeeeeecCCceeEEEEe---------CCcEEEE
Q 001480 382 KSGSTPLKFHRKIKLHVVSIAAGMVHSTALTEDGALFYWASSDPDLRCQQLYSMCGRNVVSISA---------GKYWTAA 452 (1071)
Q Consensus 382 ~~~~~p~~~~~~~~~~I~~Ia~G~~hslaLt~dG~Vy~WG~n~~~~~p~~v~~l~g~~Vv~Iaa---------G~~htla 452 (1071)
.-...+........ ...-.+++....+++...|.||.--++...............--..+.+ |..+.++
T Consensus 167 tW~~~~~~~~~p~~-~~~i~~~~~~~~~ivg~~G~v~~S~D~G~tW~~~~~~t~~~~l~~~~~s~~~g~~~y~Gsf~~v~ 245 (398)
T PLN00033 167 TWERIPLSPKLPGE-PVLIKATGPKSAEMVTDEGAIYVTSNAGRNWKAAVEETVSATLNRTVSSGISGASYYTGTFSTVN 245 (398)
T ss_pred CceECccccCCCCC-ceEEEEECCCceEEEeccceEEEECCCCCCceEcccccccccccccccccccccceeccceeeEE
Q ss_pred EeeCCcEEEecCCC-------CCCCCCceEEecCcccEEEEEecCCeEEEEEeCCCCcc
Q 001480 453 VTATGDVYMWDGKK-------SKDNPPLVTRLHGIKKATSVSVGETHLLIVGSLYHPIY 504 (1071)
Q Consensus 453 LT~dG~Vy~WG~N~-------~~~~~~~p~~v~g~~~V~~Va~G~~HtlaL~s~~~~v~ 504 (1071)
...+|.++.+|..+ .++....+...+....+..+....+..++++...+.++
T Consensus 246 ~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~G~l~ 304 (398)
T PLN00033 246 RSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLTRGGGLY 304 (398)
T ss_pred EcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEeCCceEE
No 198
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=40.92 E-value=5.6e+02 Score=28.65 Aligned_cols=180 Identities=16% Similarity=0.121 Sum_probs=91.9
Q ss_pred cEEEEEEcCCceeEEe--cCCcEEEEeCCCCCCcCCCCCCCCCcccceeeeccCCCCEEEEEecCCeEEEEeeCCcEEEE
Q 001480 299 KIIAVAAANKHTAVVS--ESGEVFTWGCNREGQLGYGTSNSASNYTPRVVESLKGKDLVGVAAAKYHTIVLGADGERVIV 376 (1071)
Q Consensus 299 ~Iv~VacG~~HSlaLT--~dG~VY~WG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~I~~IaaG~~htlaLt~dG~Vy~w 376 (1071)
+|-.|......++++. -|-.+-+|-+-. ..+.|.++-.-....|.+|.....-.++=..||++-.+
T Consensus 103 qVNtV~fNeesSVv~SgsfD~s~r~wDCRS------------~s~ePiQildea~D~V~Si~v~~heIvaGS~DGtvRty 170 (307)
T KOG0316|consen 103 QVNTVRFNEESSVVASGSFDSSVRLWDCRS------------RSFEPIQILDEAKDGVSSIDVAEHEIVAGSVDGTVRTY 170 (307)
T ss_pred eeeEEEecCcceEEEeccccceeEEEEccc------------CCCCccchhhhhcCceeEEEecccEEEeeccCCcEEEE
Confidence 3444444444555543 244566775431 13456665433334688888777777777788886554
Q ss_pred e----cCCCCCCCccceeccccCCcEEEEE--eCCCcceEEecCCcEEEEeCCCCCCceeeeeecCCce------eEEEE
Q 001480 377 A----RNLKKSGSTPLKFHRKIKLHVVSIA--AGMVHSTALTEDGALFYWASSDPDLRCQQLYSMCGRN------VVSIS 444 (1071)
Q Consensus 377 G----~n~~~~~~~p~~~~~~~~~~I~~Ia--~G~~hslaLt~dG~Vy~WG~n~~~~~p~~v~~l~g~~------Vv~Ia 444 (1071)
- +-....... +|..|+ -..+++++-.-++.+-..-.....+ +....+.+ =-.+.
T Consensus 171 diR~G~l~sDy~g~----------pit~vs~s~d~nc~La~~l~stlrLlDk~tGkl----L~sYkGhkn~eykldc~l~ 236 (307)
T KOG0316|consen 171 DIRKGTLSSDYFGH----------PITSVSFSKDGNCSLASSLDSTLRLLDKETGKL----LKSYKGHKNMEYKLDCCLN 236 (307)
T ss_pred EeecceeehhhcCC----------cceeEEecCCCCEEEEeeccceeeecccchhHH----HHHhcccccceeeeeeeec
Confidence 2 211112222 333333 2333333333344333322211100 00001100 01122
Q ss_pred eCCcEEEEEeeCCcEEEecCCCCCCCCCceEEecCcccEEEEEecCCeEEEEEeCCCCccCC
Q 001480 445 AGKYWTAAVTATGDVYMWDGKKSKDNPPLVTRLHGIKKATSVSVGETHLLIVGSLYHPIYPP 506 (1071)
Q Consensus 445 aG~~htlaLT~dG~Vy~WG~N~~~~~~~~p~~v~g~~~V~~Va~G~~HtlaL~s~~~~v~~w 506 (1071)
-...|.+--.+||.||.|..-+..+. ...++++.-.|++++|-..--.+++...+..++|
T Consensus 237 qsdthV~sgSEDG~Vy~wdLvd~~~~--sk~~~~~~v~v~dl~~hp~~~~f~~A~~~~~~~~ 296 (307)
T KOG0316|consen 237 QSDTHVFSGSEDGKVYFWDLVDETQI--SKLSVVSTVIVTDLSCHPTMDDFITATGHGDLFW 296 (307)
T ss_pred ccceeEEeccCCceEEEEEeccceee--eeeccCCceeEEeeecccCccceeEecCCceece
Confidence 24456666689999999986655432 1223344435788888887777777776777888
No 199
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=39.99 E-value=7.3e+02 Score=32.15 Aligned_cols=125 Identities=17% Similarity=0.214 Sum_probs=56.6
Q ss_pred eEEEEecCCcEEEEecCCCCCCCCCCCccCC---CCcceeeeeeeecCCCCCCEEEEEecCc-eEEEEEcCCcEEE----
Q 001480 199 HSVAVTSLGEVYTWGYGRGGRLGHPDFDIHS---GQAAVITPRRVTSGLGSRRVKTIAAAKH-HTVLATEGGEVFT---- 270 (1071)
Q Consensus 199 HslaLT~dG~Vy~WG~N~~GQLG~g~~~~~s---~~~~v~~P~~V~~~l~~~~Iv~IAcG~~-HslaLT~dG~Vys---- 270 (1071)
..++...+|.||+|-.+...-+-........ ........+.+......-.|..|..... +.++|.-.-.|+.
T Consensus 34 rNLl~~~d~~L~vWd~~e~~l~~~nlr~~~~~~~~~~~~~~q~L~~~~~~~f~v~~i~~n~~g~~lal~G~~~v~V~~LP 113 (717)
T PF10168_consen 34 RNLLACRDGDLFVWDSSECCLLTVNLRSLESDAEGPAKSSYQKLLPSNPPLFEVHQISLNPTGSLLALVGPRGVVVLELP 113 (717)
T ss_pred eeeEEEeCCEEEEEECCCCEEEEEeeccccccccCccccCcceeecCCCCceeEEEEEECCCCCEEEEEcCCcEEEEEec
Confidence 4555566799999976664432221110000 0000111111111112235666665443 2233333333332
Q ss_pred --EeCCCCCCcCCCCCCCCCcceeecc----CcccEEEEE-----EcCCceeEEecCCcEEEEe
Q 001480 271 --WGSNREGQLGYTSVDTQPTPRRVSS----LKLKIIAVA-----AANKHTAVVSESGEVFTWG 323 (1071)
Q Consensus 271 --wG~N~~GQLG~g~~~~~~~P~~V~~----l~~~Iv~Va-----cG~~HSlaLT~dG~VY~WG 323 (1071)
||.+.+-+-|.....-...|.--.. ....|.+|. ....|-++||+|+.+-.+-
T Consensus 114 ~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~ 177 (717)
T PF10168_consen 114 RRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYD 177 (717)
T ss_pred cccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEe
Confidence 7766433333332222222211111 123577764 3467999999999877764
No 200
>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].
Probab=38.61 E-value=47 Score=29.79 Aligned_cols=47 Identities=21% Similarity=0.195 Sum_probs=36.7
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHhc
Q 001480 29 KDLCLAVREGSLADVESALALLKKNGGNINSRNIFGLTPLHSAIWRNQVPIVRRLLAA 86 (1071)
Q Consensus 29 TpLh~Aa~~G~~~~v~~lL~lLl~~GadiN~~d~~G~TpLH~Aa~~g~~eivk~LL~~ 86 (1071)
..|..|...|+.++++ .+++.+ .++ ...|..|+...+.+++++|++.
T Consensus 8 ~tl~~Ai~GGN~eII~----~c~~~~-~~~------~~~l~~AI~~H~n~i~~~l~~~ 54 (76)
T PF11929_consen 8 KTLEYAIIGGNFEIIN----ICLKKN-KPD------NDCLEYAIKSHNNEIADWLIEN 54 (76)
T ss_pred HHHHHHHhCCCHHHHH----HHHHHh-ccH------HHHHHHHHHHhhHHHHHHHHHh
Confidence 4689999999999999 444443 222 3468999999999999999886
No 201
>PHA02414 hypothetical protein
Probab=38.42 E-value=41 Score=31.77 Aligned_cols=32 Identities=31% Similarity=0.536 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHh
Q 001480 698 SKQVRALRKKLQQIEMLEVKLSNGHILDEQQIAKL 732 (1071)
Q Consensus 698 ~k~~r~l~kkl~~ie~l~~k~~~g~~l~~~q~~k~ 732 (1071)
++.|.+| +-|||.||.|++.|+..++..-.-|
T Consensus 3 D~~in~L---v~~v~~ledKiQ~Gelt~kgdn~eL 34 (111)
T PHA02414 3 DKEINNL---VSQVETLEDKIQEGELTDKGDNKEL 34 (111)
T ss_pred chHHHHH---HHHHHHHHHHHhcCccccCCchHHH
Confidence 5667776 5678899999999999877643333
No 202
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=38.30 E-value=1e+03 Score=32.43 Aligned_cols=76 Identities=18% Similarity=0.258 Sum_probs=46.1
Q ss_pred CCEEEEEecCce-EEEEE--cCCcEEEEeCCCCCCcCCC-CCCCCCcceeeccCcccEEEEE-EcCCceeEE-ecCCcEE
Q 001480 247 RRVKTIAAAKHH-TVLAT--EGGEVFTWGSNREGQLGYT-SVDTQPTPRRVSSLKLKIIAVA-AANKHTAVV-SESGEVF 320 (1071)
Q Consensus 247 ~~Iv~IAcG~~H-slaLT--~dG~VyswG~N~~GQLG~g-~~~~~~~P~~V~~l~~~Iv~Va-cG~~HSlaL-T~dG~VY 320 (1071)
..+.+++....| +++++ +||.|-.|-.-. -.|.+ ......+-.. .+.++..|. |++.+.+|+ +.||.|-
T Consensus 1049 ~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k--~~~~~~s~rS~ltys~---~~sr~~~vt~~~~~~~~Av~t~DG~v~ 1123 (1431)
T KOG1240|consen 1049 SAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRK--LEGEGGSARSELTYSP---EGSRVEKVTMCGNGDQFAVSTKDGSVR 1123 (1431)
T ss_pred ccccceeecCCCCceEEEecCCceEEEeeehh--hhcCcceeeeeEEEec---cCCceEEEEeccCCCeEEEEcCCCeEE
Confidence 356688888888 77775 689999996543 12221 1111111111 223566664 677777665 7899998
Q ss_pred EEeCCCC
Q 001480 321 TWGCNRE 327 (1071)
Q Consensus 321 ~WG~N~~ 327 (1071)
..+-+.+
T Consensus 1124 ~~~id~~ 1130 (1431)
T KOG1240|consen 1124 VLRIDHY 1130 (1431)
T ss_pred EEEcccc
Confidence 8887654
No 203
>PRK05560 DNA gyrase subunit A; Validated
Probab=36.95 E-value=1.1e+03 Score=30.97 Aligned_cols=211 Identities=10% Similarity=0.091 Sum_probs=102.4
Q ss_pred ecCCceEEEEecCCcEEEEecCCCCCCCCCCCccCCCCcceeeeeeeecCCCCCCEEEEEecC-----ceEEEEEcCCcE
Q 001480 194 SAAKFHSVAVTSLGEVYTWGYGRGGRLGHPDFDIHSGQAAVITPRRVTSGLGSRRVKTIAAAK-----HHTVLATEGGEV 268 (1071)
Q Consensus 194 a~G~~HslaLT~dG~Vy~WG~N~~GQLG~g~~~~~s~~~~v~~P~~V~~~l~~~~Iv~IAcG~-----~HslaLT~dG~V 268 (1071)
+....+.+++|+.|++|..-...--..+... .....-..+. ...+++|+.+.+-. ...+++|.+|.+
T Consensus 545 ~~t~d~LllfTs~Grv~~l~v~~iP~~~~~~-------~G~~i~~ll~-L~~~E~Iv~~i~~~~~~~e~~lvlvTk~Gyi 616 (805)
T PRK05560 545 ASTHDTLLFFTNRGRVYRLKVYEIPEASRTA-------RGRPIVNLLP-LEPGEKITAILPVREFDDDKYLFFATKNGTV 616 (805)
T ss_pred ecCCCeEEEEecCCeEEEEEhhhCcCCCcCC-------CCeEHHHhcC-CCCCceEEEEEeccCCCCCCEEEEEeCCCEE
Confidence 3356678899999999998654221111100 0000001111 22456777776644 357888999977
Q ss_pred EEEeCCCCCCcCCCCCCCCCcceeeccCcccEEEEEE--cCCceeEEecCCcEEEEeCCCCCCcCCCCCCCCCcccceee
Q 001480 269 FTWGSNREGQLGYTSVDTQPTPRRVSSLKLKIIAVAA--ANKHTAVVSESGEVFTWGCNREGQLGYGTSNSASNYTPRVV 346 (1071)
Q Consensus 269 yswG~N~~GQLG~g~~~~~~~P~~V~~l~~~Iv~Vac--G~~HSlaLT~dG~VY~WG~N~~GQLG~g~~~~~~~~~P~~V 346 (1071)
.-.-.+.+-....+... -..+.. +..++.+.. ...+.+++|++|++|.+-...--..|...... + .+
T Consensus 617 KRi~l~~~~~~~r~G~~----~ikLke-~D~lv~v~~~~~~d~lll~T~~Gr~~r~~~~eIp~~gr~~~Gv-----~-~i 685 (805)
T PRK05560 617 KKTSLSEFSNIRSNGII----AINLDE-GDELIGVRLTDGDDDILLATKNGKAIRFPESDVRPMGRTARGV-----R-GI 685 (805)
T ss_pred EEEEhHHhhhcccCCce----eeccCC-CCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCccCcccCCc-----c-cc
Confidence 65433322110000000 000000 124444433 34467889999999998655433333322110 0 01
Q ss_pred eccCCCCEEEEEecC---CeEEEEeeCCcEEEEecC-CC--CCCCccceeccc-c-CCcEEEE--EeCCCcceEEecCCc
Q 001480 347 ESLKGKDLVGVAAAK---YHTIVLGADGERVIVARN-LK--KSGSTPLKFHRK-I-KLHVVSI--AAGMVHSTALTEDGA 416 (1071)
Q Consensus 347 ~~l~~~~I~~IaaG~---~htlaLt~dG~Vy~wG~n-~~--~~~~~p~~~~~~-~-~~~I~~I--a~G~~hslaLt~dG~ 416 (1071)
..-.+..|+.+.+.. .+.+++|+.|.+...--. .. ...........+ . +..++.+ ..+....+++|.+|.
T Consensus 686 ~L~~~E~Vv~~~~v~~~~~~il~vTk~G~iKr~~l~e~~~~~R~~kG~~~lkl~~~~d~lv~v~~v~~~~~v~i~T~~G~ 765 (805)
T PRK05560 686 KLREGDEVVSMDVVREDSQEILTVTENGYGKRTPVSEYRLQGRGGKGVITIKITEKNGKLVGALPVDDDDEIMLITDSGK 765 (805)
T ss_pred cCCCCCEEEEEEEEcCCCcEEEEEEeCCeEEEEEHHHhhccCCCCCcEEeeeccCCCCeEEEEEEecCCCeEEEEecCCe
Confidence 222355676665543 257788888876665322 11 111111111111 1 1233332 234455778888888
Q ss_pred EEEEeCC
Q 001480 417 LFYWASS 423 (1071)
Q Consensus 417 Vy~WG~n 423 (1071)
+..+-.+
T Consensus 766 ~lrf~~~ 772 (805)
T PRK05560 766 LIRTRVS 772 (805)
T ss_pred EEEEEHH
Confidence 8776644
No 204
>PF08138 Sex_peptide: Sex peptide (SP) family; InterPro: IPR012608 This family consists of Sex Peptides (SP) that are found in Drosophila. On mating, Drosophila females decreases her remating rate and increases her egg-laying rate due, in part, to the transfer of SP from the male to the female. SP are found in seminal fluids transferred from the male to the female during mating. The male seminal fluid proteins are referred to as accessory gland proteins (Acps). The SP is one of the most interesting Acps and plays an important role in reproduction [].; GO: 0005179 hormone activity, 0046008 regulation of female receptivity, post-mating, 0005576 extracellular region; PDB: 2LAQ_A.
Probab=34.50 E-value=16 Score=30.71 Aligned_cols=9 Identities=67% Similarity=1.535 Sum_probs=3.8
Q ss_pred CCCCCCCcc
Q 001480 895 SEGPAWGGA 903 (1071)
Q Consensus 895 ~~~~~~~~~ 903 (1071)
.-||||||-
T Consensus 46 NlGPawGGR 54 (56)
T PF08138_consen 46 NLGPAWGGR 54 (56)
T ss_dssp ---TT-SS-
T ss_pred ccCccccCc
Confidence 469999994
No 205
>PF00167 FGF: Fibroblast growth factor; InterPro: IPR002348 The interleukin-1 (IL1) and heparin-binding growth factor (HBGF) families share low sequence similarity (about 25% []) but have very similar structures. Coupled with the Kunitz-type soybean trypsin inhibitors (STI), they form a structural superfamily. Despite their structural correspondence, however, they show no sequence similarity to the STI family. The crystal structures of interleukin-1 beta and HBGF1 have been solved, showing both families to have the same 12-stranded beta-sheet structure []; the beta-sheets are arranged in 3 similar lobes around a central axis, 6 strands forming an anti-parallel beta-barrel [, ]. The beta-sheets are generally well preserved and the crystal structures superimpose in these areas. The intervening loops are less well conserved - the loop between beta-strands 6 and 7 is slightly longer in interleukin-1 beta.; GO: 0008083 growth factor activity; PDB: 1AFC_F 1BAR_A 2P39_A 1EV2_D 2BFH_A 4FGF_A 1BAS_A 1BFG_A 1FQ9_B 1CVS_A ....
Probab=34.32 E-value=4.1e+02 Score=25.94 Aligned_cols=67 Identities=13% Similarity=0.037 Sum_probs=41.6
Q ss_pred EEEEEecCCeEEEEeeCCcEEEEecCCCCCCCccceeccccCCcEEEEEeC-CCcceEEecCCcEEEEeCC
Q 001480 354 LVGVAAAKYHTIVLGADGERVIVARNLKKSGSTPLKFHRKIKLHVVSIAAG-MVHSTALTEDGALFYWASS 423 (1071)
Q Consensus 354 I~~IaaG~~htlaLt~dG~Vy~wG~n~~~~~~~p~~~~~~~~~~I~~Ia~G-~~hslaLt~dG~Vy~WG~n 423 (1071)
.+++.|-..+-+.+..||.|-+-+.. ....+-+.+..... .++.|-.- ....++++..|.||.-...
T Consensus 2 ~~~Ly~~~~~~L~i~~~g~V~gt~~~--~~~~s~~~i~~~~~-g~V~i~~~~s~~YLcmn~~G~ly~~~~~ 69 (122)
T PF00167_consen 2 HVQLYCRTGYFLQINPNGTVDGTGDD--NSPYSVFEIHSVGF-GVVRIRGVKSCRYLCMNKCGRLYGSKNF 69 (122)
T ss_dssp EEEEEETTSEEEEEETTSBEEEESST--TSTTGEEEEEEEET-TEEEEEETTTTEEEEEBTTSBEEEESSB
T ss_pred CEEEEECCCeEEEECCCCeEeCCCCc--CcceeEEEEEeccc-eEEEEEEecceEEEEECCCCeEcccccc
Confidence 46777877788888899998887754 12222233332222 33334333 3556889999999986543
No 206
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=33.95 E-value=6.4e+02 Score=30.36 Aligned_cols=19 Identities=11% Similarity=0.174 Sum_probs=16.2
Q ss_pred CCcceEEecCCcEEEEeCC
Q 001480 405 MVHSTALTEDGALFYWASS 423 (1071)
Q Consensus 405 ~~hslaLt~dG~Vy~WG~n 423 (1071)
..|.++++-+|.+|+||.-
T Consensus 233 SGcq~~vtpqg~i~vyGGY 251 (521)
T KOG1230|consen 233 SGCQFSVTPQGGIVVYGGY 251 (521)
T ss_pred CcceEEecCCCcEEEEcch
Confidence 4788999989999999953
No 207
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=33.51 E-value=1e+03 Score=29.64 Aligned_cols=217 Identities=12% Similarity=0.110 Sum_probs=122.6
Q ss_pred cCceEEEEEcCCcEEEEeCCCCCCcCCCCCCCCCcceeeccCcccEEEEEEcCCceeEEecCCcEEEEeCCCCCCcCCCC
Q 001480 255 AKHHTVLATEGGEVFTWGSNREGQLGYTSVDTQPTPRRVSSLKLKIIAVAAANKHTAVVSESGEVFTWGCNREGQLGYGT 334 (1071)
Q Consensus 255 G~~HslaLT~dG~VyswG~N~~GQLG~g~~~~~~~P~~V~~l~~~Iv~VacG~~HSlaLT~dG~VY~WG~N~~GQLG~g~ 334 (1071)
|.+--+--+.|.++..|-.+. |++-. .+.+...-|..+.-+..+.+--+.|..|.+|=-.
T Consensus 260 ~~~~lvsgS~D~t~rvWd~~s-g~C~~----------~l~gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~--------- 319 (537)
T KOG0274|consen 260 GGDKLVSGSTDKTERVWDCST-GECTH----------SLQGHTSSVRCLTIDPFLLVSGSRDNTVKVWDVT--------- 319 (537)
T ss_pred CCCEEEEEecCCcEEeEecCC-CcEEE----------EecCCCceEEEEEccCceEeeccCCceEEEEecc---------
Confidence 444444455677888886443 33311 0111122344445455555545567778888433
Q ss_pred CCCCCcccceeeecc--CCCCEEEEEecCCeEEEEeeCCcEEEEecCCCCCCCccceeccccCCcEEEEEeCC-CcceEE
Q 001480 335 SNSASNYTPRVVESL--KGKDLVGVAAAKYHTIVLGADGERVIVARNLKKSGSTPLKFHRKIKLHVVSIAAGM-VHSTAL 411 (1071)
Q Consensus 335 ~~~~~~~~P~~V~~l--~~~~I~~IaaG~~htlaLt~dG~Vy~wG~n~~~~~~~p~~~~~~~~~~I~~Ia~G~-~hslaL 411 (1071)
.+..+..+ ....|..|.++....+.-+.||.|-+|-... ...+.........|..+..+. .+.+=-
T Consensus 320 -------n~~~l~l~~~h~~~V~~v~~~~~~lvsgs~d~~v~VW~~~~----~~cl~sl~gH~~~V~sl~~~~~~~~~Sg 388 (537)
T KOG0274|consen 320 -------NGACLNLLRGHTGPVNCVQLDEPLLVSGSYDGTVKVWDPRT----GKCLKSLSGHTGRVYSLIVDSENRLLSG 388 (537)
T ss_pred -------CcceEEEeccccccEEEEEecCCEEEEEecCceEEEEEhhh----ceeeeeecCCcceEEEEEecCcceEEee
Confidence 22233222 2346889999999999999999988886541 112222222234788877777 676666
Q ss_pred ecCCcEEEEeCCCCCCceeeeeecCCceeEEEEeCCcEEEEEeeCCcEEEecCCCCCCCCCceEEecCcccEEEEEecCC
Q 001480 412 TEDGALFYWASSDPDLRCQQLYSMCGRNVVSISAGKYWTAAVTATGDVYMWDGKKSKDNPPLVTRLHGIKKATSVSVGET 491 (1071)
Q Consensus 412 t~dG~Vy~WG~n~~~~~p~~v~~l~g~~Vv~IaaG~~htlaLT~dG~Vy~WG~N~~~~~~~~p~~v~g~~~V~~Va~G~~ 491 (1071)
..|+.+-+|-..... .+.....-...-+..+.+-..|-+--..||.+..|..+..+.......+ ....|..++.+ .
T Consensus 389 s~D~~IkvWdl~~~~-~c~~tl~~h~~~v~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~--~~~~v~~l~~~-~ 464 (537)
T KOG0274|consen 389 SLDTTIKVWDLRTKR-KCIHTLQGHTSLVSSLLLRDNFLVSSSADGTIKLWDAEEGECLRTLEGR--HVGGVSALALG-K 464 (537)
T ss_pred eeccceEeecCCchh-hhhhhhcCCcccccccccccceeEeccccccEEEeecccCceeeeeccC--CcccEEEeecC-c
Confidence 677888888766542 1111111111234455555566666678999999976665432222111 22356666666 6
Q ss_pred eEEEEEeCCCCccCC
Q 001480 492 HLLIVGSLYHPIYPP 506 (1071)
Q Consensus 492 HtlaL~s~~~~v~~w 506 (1071)
+.++.....+.+.-|
T Consensus 465 ~~il~s~~~~~~~l~ 479 (537)
T KOG0274|consen 465 EEILCSSDDGSVKLW 479 (537)
T ss_pred ceEEEEecCCeeEEE
Confidence 666666666776666
No 208
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=33.30 E-value=7.7e+02 Score=29.06 Aligned_cols=232 Identities=16% Similarity=0.188 Sum_probs=0.0
Q ss_pred EEEEEecCc--eEEEEEcCCc-EEEEeCCCCCCcCCCCCCCCCcceeeccCcccEEEEEEcCC-ceeEEecCCcEEEEeC
Q 001480 249 VKTIAAAKH--HTVLATEGGE-VFTWGSNREGQLGYTSVDTQPTPRRVSSLKLKIIAVAAANK-HTAVVSESGEVFTWGC 324 (1071)
Q Consensus 249 Iv~IAcG~~--HslaLT~dG~-VyswG~N~~GQLG~g~~~~~~~P~~V~~l~~~Iv~VacG~~-HSlaLT~dG~VY~WG~ 324 (1071)
+..|..|.. +.++.+.||+ +|+. |..|.+..-+..... .+..|..|.. +.++++.||+...-++
T Consensus 29 ~~~i~~~~~~h~~~~~s~Dgr~~yv~--~rdg~vsviD~~~~~----------~v~~i~~G~~~~~i~~s~DG~~~~v~n 96 (369)
T PF02239_consen 29 VARIPTGGAPHAGLKFSPDGRYLYVA--NRDGTVSVIDLATGK----------VVATIKVGGNPRGIAVSPDGKYVYVAN 96 (369)
T ss_dssp EEEEE-STTEEEEEE-TT-SSEEEEE--ETTSEEEEEETTSSS----------EEEEEE-SSEEEEEEE--TTTEEEEEE
T ss_pred EEEEcCCCCceeEEEecCCCCEEEEE--cCCCeEEEEECCccc----------EEEEEecCCCcceEEEcCCCCEEEEEe
Q ss_pred CCCCCcCCCCCCCCCcccceeeeccCC----CCEEEEEecCC---eEEEEeeCCcEEEEecCCCCCCCccceeccccCCc
Q 001480 325 NREGQLGYGTSNSASNYTPRVVESLKG----KDLVGVAAAKY---HTIVLGADGERVIVARNLKKSGSTPLKFHRKIKLH 397 (1071)
Q Consensus 325 N~~GQLG~g~~~~~~~~~P~~V~~l~~----~~I~~IaaG~~---htlaLt~dG~Vy~wG~n~~~~~~~p~~~~~~~~~~ 397 (1071)
...+++-.-+........-..+..... .++..|.+... +.+.+.+.|++|..-.. ......
T Consensus 97 ~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~------------d~~~~~ 164 (369)
T PF02239_consen 97 YEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYS------------DPKNLK 164 (369)
T ss_dssp EETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETT------------TSSCEE
T ss_pred cCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEec------------cccccc
Q ss_pred EEEEEeC-CCcceEEecCCcEEEEeCCCCCCceeeeeecCCceeEEEEeC------CcEEEEEeeCCcEEEecCCCC---
Q 001480 398 VVSIAAG-MVHSTALTEDGALFYWASSDPDLRCQQLYSMCGRNVVSISAG------KYWTAAVTATGDVYMWDGKKS--- 467 (1071)
Q Consensus 398 I~~Ia~G-~~hslaLt~dG~Vy~WG~n~~~~~p~~v~~l~g~~Vv~IaaG------~~htlaLT~dG~Vy~WG~N~~--- 467 (1071)
+..+..| .-|=.+++.+|+.|.-+.+... .-.-+..-.+.-+..+..| .-..+.--..|-+|.++....
T Consensus 165 ~~~i~~g~~~~D~~~dpdgry~~va~~~sn-~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~ 243 (369)
T PF02239_consen 165 VTTIKVGRFPHDGGFDPDGRYFLVAANGSN-KIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAI 243 (369)
T ss_dssp EEEEE--TTEEEEEE-TTSSEEEEEEGGGT-EEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEE
T ss_pred eeeecccccccccccCcccceeeecccccc-eeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceec
Q ss_pred ---CCCCCceEEecCcccEEEEEecCCeEEEEEeCCCCccCC
Q 001480 468 ---KDNPPLVTRLHGIKKATSVSVGETHLLIVGSLYHPIYPP 506 (1071)
Q Consensus 468 ---~~~~~~p~~v~g~~~V~~Va~G~~HtlaL~s~~~~v~~w 506 (1071)
+...........++-|..|..+..- +++.......|-|
T Consensus 244 ~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vw 284 (369)
T PF02239_consen 244 PLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVW 284 (369)
T ss_dssp EEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEE
T ss_pred ccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEE
No 209
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=33.13 E-value=9.7e+02 Score=29.13 Aligned_cols=153 Identities=16% Similarity=0.152 Sum_probs=79.7
Q ss_pred ccEEEEEEcCCceeE--EecCCcEEEEeCCCCCCcCCCCCCCCCcccceeeeccCCCCEEEEEecCCeEEEEe--eCCcE
Q 001480 298 LKIIAVAAANKHTAV--VSESGEVFTWGCNREGQLGYGTSNSASNYTPRVVESLKGKDLVGVAAAKYHTIVLG--ADGER 373 (1071)
Q Consensus 298 ~~Iv~VacG~~HSla--LT~dG~VY~WG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~I~~IaaG~~htlaLt--~dG~V 373 (1071)
..|..+++...-.++ =|..|++|+|=.+ .|.|=.-- .---..|+.+....+-+.+++ +||.|
T Consensus 82 g~v~al~s~n~G~~l~ag~i~g~lYlWels-sG~LL~v~-------------~aHYQ~ITcL~fs~dgs~iiTgskDg~V 147 (476)
T KOG0646|consen 82 GPVHALASSNLGYFLLAGTISGNLYLWELS-SGILLNVL-------------SAHYQSITCLKFSDDGSHIITGSKDGAV 147 (476)
T ss_pred cceeeeecCCCceEEEeecccCcEEEEEec-cccHHHHH-------------HhhccceeEEEEeCCCcEEEecCCCccE
Confidence 356666665553333 3689999999765 23321100 000124555555555555554 68889
Q ss_pred EEEecC-----CCCCCCccceeccccCCcEEEEEeCCCc--ceEEe--cCCcEEEEeCCCCCCceeeeeecCCceeEEEE
Q 001480 374 VIVARN-----LKKSGSTPLKFHRKIKLHVVSIAAGMVH--STALT--EDGALFYWASSDPDLRCQQLYSMCGRNVVSIS 444 (1071)
Q Consensus 374 y~wG~n-----~~~~~~~p~~~~~~~~~~I~~Ia~G~~h--slaLt--~dG~Vy~WG~n~~~~~p~~v~~l~g~~Vv~Ia 444 (1071)
++|--. .......|......-...|+++.+|..- +.++| .|..+-+|--....+.-.-+.+ .....+.+.
T Consensus 148 ~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp-~si~av~lD 226 (476)
T KOG0646|consen 148 LVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFP-SSIKAVALD 226 (476)
T ss_pred EEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecC-CcceeEEEc
Confidence 988643 2222334444444444578888887663 23333 4555556654332221111111 111233344
Q ss_pred eCCcEEEEEeeCCcEEEecCC
Q 001480 445 AGKYWTAAVTATGDVYMWDGK 465 (1071)
Q Consensus 445 aG~~htlaLT~dG~Vy~WG~N 465 (1071)
-+..++++=+++|.+|..-.+
T Consensus 227 pae~~~yiGt~~G~I~~~~~~ 247 (476)
T KOG0646|consen 227 PAERVVYIGTEEGKIFQNLLF 247 (476)
T ss_pred ccccEEEecCCcceEEeeehh
Confidence 466677777888888876433
No 210
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=32.73 E-value=1.1e+03 Score=29.64 Aligned_cols=115 Identities=16% Similarity=0.088 Sum_probs=59.7
Q ss_pred cCCceeEEecCCcEEEEeC-CCCCCcCCCCCCCCCcccceeeeccCCCCEEEEEecCCeEEEEeeCC--cEEEEecCCCC
Q 001480 306 ANKHTAVVSESGEVFTWGC-NREGQLGYGTSNSASNYTPRVVESLKGKDLVGVAAAKYHTIVLGADG--ERVIVARNLKK 382 (1071)
Q Consensus 306 G~~HSlaLT~dG~VY~WG~-N~~GQLG~g~~~~~~~~~P~~V~~l~~~~I~~IaaG~~htlaLt~dG--~Vy~wG~n~~~ 382 (1071)
=.+|.++-|+.|.||..=. +..-+.. ..+.+..........|..|....+|.-.++.-| .|-.|-...
T Consensus 359 ~p~~FiVGTe~G~v~~~~r~g~~~~~~-------~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~-- 429 (555)
T KOG1587|consen 359 DPNHFIVGTEEGKVYKGCRKGYTPAPE-------VSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDV-- 429 (555)
T ss_pred CCceEEEEcCCcEEEEEeccCCccccc-------ccccccccccccCcceEeeecCCCccceeeeeccceeEeccccC--
Confidence 3557788899999998322 1111110 112233233333446677777666655554444 344443321
Q ss_pred CCCccceeccccCCcEEEEEeCCCcc---eEEecCCcEEEEeCCCCCCcee
Q 001480 383 SGSTPLKFHRKIKLHVVSIAAGMVHS---TALTEDGALFYWASSDPDLRCQ 430 (1071)
Q Consensus 383 ~~~~p~~~~~~~~~~I~~Ia~G~~hs---laLt~dG~Vy~WG~n~~~~~p~ 430 (1071)
...|..........|..++=...|. ++.+.+|.++.|--......|.
T Consensus 430 -~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv 479 (555)
T KOG1587|consen 430 -IASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPV 479 (555)
T ss_pred -CCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCc
Confidence 2233332222223466666666663 3445689999998766554443
No 211
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.39 E-value=8.9e+02 Score=31.31 Aligned_cols=72 Identities=11% Similarity=0.067 Sum_probs=40.0
Q ss_pred CcEEEEEeC--CCcceEEecCCcEEEEeCCCCCCceeeeeecCCceeEEEEeCCcEEEEEeeCCcEEEecCCCCC
Q 001480 396 LHVVSIAAG--MVHSTALTEDGALFYWASSDPDLRCQQLYSMCGRNVVSISAGKYWTAAVTATGDVYMWDGKKSK 468 (1071)
Q Consensus 396 ~~I~~Ia~G--~~hslaLt~dG~Vy~WG~n~~~~~p~~v~~l~g~~Vv~IaaG~~htlaLT~dG~Vy~WG~N~~~ 468 (1071)
..+.+|+.. ..|.+..|+.|.+|.--..-....+..--......-.-..||.. ++++.-+..|-..|.+++.
T Consensus 217 ~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcgnd-aVvl~~e~~l~lvgp~gd~ 290 (829)
T KOG2280|consen 217 SSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGND-AVVLSWEVNLMLVGPPGDS 290 (829)
T ss_pred ceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeecCC-ceEEEEeeeEEEEcCCCCc
Confidence 467777776 45667778999998755432111111000000011133457766 6666667788888877643
No 212
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.36 E-value=4.8e+02 Score=33.53 Aligned_cols=146 Identities=16% Similarity=0.170 Sum_probs=67.8
Q ss_pred CCce-eEEecCCcEEEEeCCCCCCcCCCCCCCCCcccceeeeccCCCCEEEEEecCCeEEEEeeCCcEEEEecCCCCC--
Q 001480 307 NKHT-AVVSESGEVFTWGCNREGQLGYGTSNSASNYTPRVVESLKGKDLVGVAAAKYHTIVLGADGERVIVARNLKKS-- 383 (1071)
Q Consensus 307 ~~HS-laLT~dG~VY~WG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~I~~IaaG~~htlaLt~dG~Vy~wG~n~~~~-- 383 (1071)
..|. ++++++|.|+++|.- |.. .... +.-.+ ....+|..+..-.+-.++++.+|+++..-.+...-
T Consensus 93 ~~eeLI~v~k~g~v~Vy~~~--ge~---ie~~-svg~e-----~~~~~I~ec~~f~~GVavlt~~g~v~~i~~~~~~~~~ 161 (829)
T KOG2280|consen 93 DDEELICVQKDGTVHVYGLL--GEF---IESN-SVGFE-----SQMSDIVECRFFHNGVAVLTVSGQVILINGVEEPKLR 161 (829)
T ss_pred CCceEEEEeccceEEEeecc--hhh---hccc-ccccc-----cccCceeEEEEecCceEEEecCCcEEEEcCCCcchhh
Confidence 3455 457999999998753 221 1000 00011 12234555555557789999999999876542211
Q ss_pred CCccceeccccCCcEEEEEeCCCcceEEecCCcEEEEeC--CCCCCceeeeeecCCceeEEEEeC--CcEEEEEeeCCcE
Q 001480 384 GSTPLKFHRKIKLHVVSIAAGMVHSTALTEDGALFYWAS--SDPDLRCQQLYSMCGRNVVSISAG--KYWTAAVTATGDV 459 (1071)
Q Consensus 384 ~~~p~~~~~~~~~~I~~Ia~G~~hslaLt~dG~Vy~WG~--n~~~~~p~~v~~l~g~~Vv~IaaG--~~htlaLT~dG~V 459 (1071)
...+++........-.-+.-+..-++.+.-+-.|.--+. .........+. .....+++|+.. ..|.+..|.+|.+
T Consensus 162 ~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~-~~~~~~~ki~VS~n~~~laLyt~~G~i 240 (829)
T KOG2280|consen 162 KMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALS-WPNSSVVKISVSPNRRFLALYTETGKI 240 (829)
T ss_pred hCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccC-CCCceEEEEEEcCCcceEEEEecCCcE
Confidence 111112222221112222222222333332212211111 11001111111 113567777765 4577778999999
Q ss_pred EEecC
Q 001480 460 YMWDG 464 (1071)
Q Consensus 460 y~WG~ 464 (1071)
|+--.
T Consensus 241 ~~vs~ 245 (829)
T KOG2280|consen 241 WVVSI 245 (829)
T ss_pred EEEec
Confidence 98653
No 213
>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses. These proteins may be involved in promoting survival of infected macrophages [].
Probab=30.77 E-value=73 Score=33.92 Aligned_cols=84 Identities=17% Similarity=0.162 Sum_probs=50.7
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccCCC--CCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCcccccccc
Q 001480 29 KDLCLAVREGSLADVESALALLKKNGGNINSRNIF--GLTPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRAL 106 (1071)
Q Consensus 29 TpLh~Aa~~G~~~~v~~lL~lLl~~GadiN~~d~~--G~TpLH~Aa~~g~~eivk~LL~~GAd~n~~d~~~G~TpL~~A~ 106 (1071)
+-+-.|....+++...---.++..+...-...|.. =..-|.+|+..|..+.+.-.|++|.+++. ++|..|+
T Consensus 106 ~iFdIA~~~kDlsLyslGY~l~~~~~~~~~~~d~~~ll~~hl~~a~~kgll~F~letlkygg~~~~-------~vls~Av 178 (192)
T PF03158_consen 106 DIFDIAFAKKDLSLYSLGYKLLFNRMMSEHNEDPTSLLTQHLEKAAAKGLLPFVLETLKYGGNVDI-------IVLSQAV 178 (192)
T ss_pred hhhhhhhhccchhHHHHHHHHHHhhcccccccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCCcccH-------HHHHHHH
Confidence 34556666677665553333444443222111110 11346678888888888888888877663 5777788
Q ss_pred ccccccchhhhhc
Q 001480 107 HFGHLAVASVLLQ 119 (1071)
Q Consensus 107 ~~g~~~vv~lLl~ 119 (1071)
...|..++.+++.
T Consensus 179 ~ynhRkIL~yfi~ 191 (192)
T PF03158_consen 179 KYNHRKILDYFIR 191 (192)
T ss_pred HhhHHHHHHHhhc
Confidence 8888777777654
No 214
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=29.55 E-value=4.6e+02 Score=29.99 Aligned_cols=135 Identities=20% Similarity=0.255 Sum_probs=70.7
Q ss_pred cCCceeEEecCCcEEEEeCCCCCCcCCCCCCCCCcccceeeeccCCCCEEEEEecCCeEEEEeeCCcEEEEecCCCCCCC
Q 001480 306 ANKHTAVVSESGEVFTWGCNREGQLGYGTSNSASNYTPRVVESLKGKDLVGVAAAKYHTIVLGADGERVIVARNLKKSGS 385 (1071)
Q Consensus 306 G~~HSlaLT~dG~VY~WG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~I~~IaaG~~htlaLt~dG~Vy~wG~n~~~~~~ 385 (1071)
+.-|-++...||.||.-+.. .|-+|+-+..+. +-..+..-.+. .-|.+++..||..|..-....-...
T Consensus 62 ~ap~dvapapdG~VWft~qg-~gaiGhLdP~tG---ev~~ypLg~Ga--------~Phgiv~gpdg~~Witd~~~aI~R~ 129 (353)
T COG4257 62 SAPFDVAPAPDGAVWFTAQG-TGAIGHLDPATG---EVETYPLGSGA--------SPHGIVVGPDGSAWITDTGLAIGRL 129 (353)
T ss_pred CCccccccCCCCceEEecCc-cccceecCCCCC---ceEEEecCCCC--------CCceEEECCCCCeeEecCcceeEEe
Confidence 34577888899999976544 455555332211 11111111222 2466666666666665332100000
Q ss_pred cc-----ceeccccCCcEEEEEeCCCcceEEecCCcEEEEeCCCCCCceeeeeecCCceeEEEE----eCCcEEEEEeeC
Q 001480 386 TP-----LKFHRKIKLHVVSIAAGMVHSTALTEDGALFYWASSDPDLRCQQLYSMCGRNVVSIS----AGKYWTAAVTAT 456 (1071)
Q Consensus 386 ~p-----~~~~~~~~~~I~~Ia~G~~hslaLt~dG~Vy~WG~n~~~~~p~~v~~l~g~~Vv~Ia----aG~~htlaLT~d 456 (1071)
.| ..++.. .+.+-++-.+.+++..|.||.-|.+...- .+... .++++|. .+.-..++.|-|
T Consensus 130 dpkt~evt~f~lp-----~~~a~~nlet~vfD~~G~lWFt~q~G~yG---rLdPa--~~~i~vfpaPqG~gpyGi~atpd 199 (353)
T COG4257 130 DPKTLEVTRFPLP-----LEHADANLETAVFDPWGNLWFTGQIGAYG---RLDPA--RNVISVFPAPQGGGPYGICATPD 199 (353)
T ss_pred cCcccceEEeecc-----cccCCCcccceeeCCCccEEEeeccccce---ecCcc--cCceeeeccCCCCCCcceEECCC
Confidence 00 111111 34556677889999999999999764211 11111 2233332 233456778999
Q ss_pred CcEEEe
Q 001480 457 GDVYMW 462 (1071)
Q Consensus 457 G~Vy~W 462 (1071)
|+||.-
T Consensus 200 Gsvwya 205 (353)
T COG4257 200 GSVWYA 205 (353)
T ss_pred CcEEEE
Confidence 999976
No 215
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=29.44 E-value=9.3e+02 Score=27.80 Aligned_cols=19 Identities=5% Similarity=-0.064 Sum_probs=13.4
Q ss_pred cEEEEEeeCCcEEEecCCC
Q 001480 448 YWTAAVTATGDVYMWDGKK 466 (1071)
Q Consensus 448 ~htlaLT~dG~Vy~WG~N~ 466 (1071)
.+.++.+.+|.||+|....
T Consensus 321 ~~l~~~~~~G~l~~~d~~t 339 (377)
T TIGR03300 321 GYLVVGDFEGYLHWLSRED 339 (377)
T ss_pred CEEEEEeCCCEEEEEECCC
Confidence 4666677888888886443
No 216
>PTZ00421 coronin; Provisional
Probab=28.78 E-value=1.2e+03 Score=28.77 Aligned_cols=121 Identities=19% Similarity=0.098 Sum_probs=60.7
Q ss_pred eccCcccEEEEEEcC--C-ceeEEecCCcEEEEeCCCCCCcCCCCCCCCCcccceeeeccCCCCEEEEEecC---CeEEE
Q 001480 293 VSSLKLKIIAVAAAN--K-HTAVVSESGEVFTWGCNREGQLGYGTSNSASNYTPRVVESLKGKDLVGVAAAK---YHTIV 366 (1071)
Q Consensus 293 V~~l~~~Iv~VacG~--~-HSlaLT~dG~VY~WG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~I~~IaaG~---~htla 366 (1071)
+.+-...|..|+... . ..+.-..||.|..|-.+..+.... ...|...-.-....|..|.... +..+.
T Consensus 71 l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~-------~~~~l~~L~gH~~~V~~l~f~P~~~~iLaS 143 (493)
T PTZ00421 71 LLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQN-------ISDPIVHLQGHTKKVGIVSFHPSAMNVLAS 143 (493)
T ss_pred EeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccc-------cCcceEEecCCCCcEEEEEeCcCCCCEEEE
Confidence 444445788888654 2 233346799999997654332100 1112211111223566666543 23333
Q ss_pred EeeCCcEEEEecCCCCCCCccceeccccCCcEEEEEeCCC--cceEEecCCcEEEEeCCC
Q 001480 367 LGADGERVIVARNLKKSGSTPLKFHRKIKLHVVSIAAGMV--HSTALTEDGALFYWASSD 424 (1071)
Q Consensus 367 Lt~dG~Vy~wG~n~~~~~~~p~~~~~~~~~~I~~Ia~G~~--hslaLt~dG~Vy~WG~n~ 424 (1071)
-..||.|..|--.... ...........|..|+.... ..+.-..||.|.+|--..
T Consensus 144 gs~DgtVrIWDl~tg~----~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rs 199 (493)
T PTZ00421 144 AGADMVVNVWDVERGK----AVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRD 199 (493)
T ss_pred EeCCCEEEEEECCCCe----EEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCC
Confidence 3568888888654221 11111111224666665433 233344688899997554
No 217
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins.
Probab=28.26 E-value=90 Score=23.49 Aligned_cols=24 Identities=25% Similarity=0.219 Sum_probs=21.2
Q ss_pred eEEEEecCC-ceEEEEecCCcEEEE
Q 001480 189 VIKLISAAK-FHSVAVTSLGEVYTW 212 (1071)
Q Consensus 189 ~I~~Va~G~-~HslaLT~dG~Vy~W 212 (1071)
.+++|++|. ....+++.+|.||..
T Consensus 9 ~l~~isvg~~~~vW~V~~~g~i~~r 33 (35)
T smart00706 9 ELVQVSVGPSDTVWAVNSDGNIYRR 33 (35)
T ss_pred CEEEEEECCCCeEEEEcCCCCEEEE
Confidence 689999998 888899999999864
No 218
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=27.12 E-value=1.5e+03 Score=29.57 Aligned_cols=148 Identities=14% Similarity=0.118 Sum_probs=78.2
Q ss_pred EEEEecCceEEEEEcCCcEEEE-eCCCCCCcCCCCCCCCCcceeeccCcccEEEEEEcCCceeEEecCCcEEEEeCCCCC
Q 001480 250 KTIAAAKHHTVLATEGGEVFTW-GSNREGQLGYTSVDTQPTPRRVSSLKLKIIAVAAANKHTAVVSESGEVFTWGCNREG 328 (1071)
Q Consensus 250 v~IAcG~~HslaLT~dG~Vysw-G~N~~GQLG~g~~~~~~~P~~V~~l~~~Iv~VacG~~HSlaLT~dG~VY~WG~N~~G 328 (1071)
..+.+-..++.++|.-|+.|-- -.|...-|+.+ ..+..+|..+++-..|+++-. ..+||+|-.+..-
T Consensus 39 ~~~~~~~~~~~vtt~vgksfqvYd~~kl~ll~vs-----------~~lp~~I~alas~~~~vy~A~-g~~i~~~~rgk~i 106 (910)
T KOG1539|consen 39 FRVVALGSTFYVTTCVGKSFQVYDVNKLNLLFVS-----------KPLPDKITALASDKDYVYVAS-GNKIYAYARGKHI 106 (910)
T ss_pred eeeeecCceEEEEEecCceEEEEeccceEEEEec-----------CCCCCceEEEEecCceEEEec-CcEEEEEEccceE
Confidence 3444445666777777766532 22222222221 123457888888777766655 4579988655211
Q ss_pred CcCCCCCCCCCcccceeeeccCCCCEEEEEecCCeEEEEeeCCcEEEEecCCCCCC-CccceeccccCCcEEEEEeC---
Q 001480 329 QLGYGTSNSASNYTPRVVESLKGKDLVGVAAAKYHTIVLGADGERVIVARNLKKSG-STPLKFHRKIKLHVVSIAAG--- 404 (1071)
Q Consensus 329 QLG~g~~~~~~~~~P~~V~~l~~~~I~~IaaG~~htlaLt~dG~Vy~wG~n~~~~~-~~p~~~~~~~~~~I~~Ia~G--- 404 (1071)
. .+..+...+|.....=..|.++++.++.+|+|-....... .....+.......|..|.-=
T Consensus 107 ~---------------~~~~~~~a~v~~l~~fGe~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~HP~TY 171 (910)
T KOG1539|consen 107 R---------------HTTLLHGAKVHLLLPFGEHLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALLHPSTY 171 (910)
T ss_pred E---------------EEeccccceEEEEeeecceEEEEEccCcEEEEEeccccccccccceeeeccCCceeeEecchhh
Confidence 0 1111122356666677789999999999999976542111 11111111111124444322
Q ss_pred CCcceEEecCCcEEEEeCCC
Q 001480 405 MVHSTALTEDGALFYWASSD 424 (1071)
Q Consensus 405 ~~hslaLt~dG~Vy~WG~n~ 424 (1071)
-+-.++-...|++-.|.-..
T Consensus 172 LNKIvvGs~~G~lql~Nvrt 191 (910)
T KOG1539|consen 172 LNKIVVGSSQGRLQLWNVRT 191 (910)
T ss_pred eeeEEEeecCCcEEEEEecc
Confidence 12223335778888887554
No 219
>PRK13979 DNA topoisomerase IV subunit A; Provisional
Probab=27.04 E-value=1.7e+03 Score=30.02 Aligned_cols=159 Identities=6% Similarity=0.038 Sum_probs=77.6
Q ss_pred CceEEEEEcCCcEEEEeCCCCCCcCCCCCCCCCcceeeccCcccEEEEEEc--CCceeEEecCCcEEEEeCCCCCCcCCC
Q 001480 256 KHHTVLATEGGEVFTWGSNREGQLGYTSVDTQPTPRRVSSLKLKIIAVAAA--NKHTAVVSESGEVFTWGCNREGQLGYG 333 (1071)
Q Consensus 256 ~~HslaLT~dG~VyswG~N~~GQLG~g~~~~~~~P~~V~~l~~~Iv~VacG--~~HSlaLT~dG~VY~WG~N~~GQLG~g 333 (1071)
..-.+.||.+|-+-..-...|..-+.+... ..... ...+..+..+ .++-+++|+.|+||..=...--....
T Consensus 516 E~v~v~lS~~GyIKr~~~~~~~~q~~g~~~-----~~~ke-~D~i~~~~~~~T~d~LL~FTn~Gkvy~ikvy~IPe~~~- 588 (957)
T PRK13979 516 EDVVITLSNEGFIKRIPLKSYNRSNSNVED-----IEYRE-GDFNKFLIQSNTKDTLLIFTDKGNMYQIKGINIPEFKW- 588 (957)
T ss_pred cceEEEEecCCEEEEccccccccccccccc-----cccCC-CCceEEEEEEcCCCEEEEEECCCeEEEEEeeeCCCCCc-
Confidence 455778888886655433333211111000 00001 1244444433 44556789999999875432222111
Q ss_pred CCCCCCcccceeeecc--CCCCEEEEEecC-----CeEEEEeeCCcEEEEecC-CCCCCCccceeccccCCcEEEEEeCC
Q 001480 334 TSNSASNYTPRVVESL--KGKDLVGVAAAK-----YHTIVLGADGERVIVARN-LKKSGSTPLKFHRKIKLHVVSIAAGM 405 (1071)
Q Consensus 334 ~~~~~~~~~P~~V~~l--~~~~I~~IaaG~-----~htlaLt~dG~Vy~wG~n-~~~~~~~p~~~~~~~~~~I~~Ia~G~ 405 (1071)
...-...-..+..+ .+.+|+.+.+-. .+.+++|.+|.+...--. +......-..+....+..++.+....
T Consensus 589 --~~~G~~I~nll~~~~~~~EkIv~i~~~~ef~~~~~lv~~Tk~G~VKrt~L~ef~~~r~~~~aikL~e~DeLV~v~~~~ 666 (957)
T PRK13979 589 --KEKGERLDEIIKGIDLESEKIIEAYSIEDFTPQKDFIFITDSGGIKKTSLDKFVTNYTKLMALKLKKGEKLIKVKLVD 666 (957)
T ss_pred --CCCCeEHHHhhhccCCCCCeEEEEEEeccCCCCCEEEEEECCCeEEEEehhhccccccceEEEEcCCCCEEEEEEEcC
Confidence 11001111112111 366787777653 246888999998876533 11111111112222333455444332
Q ss_pred -----CcceEEecCCcEEEEeCC
Q 001480 406 -----VHSTALTEDGALFYWASS 423 (1071)
Q Consensus 406 -----~hslaLt~dG~Vy~WG~n 423 (1071)
.+.+++|++|.+..+-.+
T Consensus 667 ~~~~~~~Iil~Tk~G~airF~~~ 689 (957)
T PRK13979 667 RTREEKFIKIKTKKGLSFTVEEP 689 (957)
T ss_pred CCCCCCEEEEEeCCCcEEEEEHH
Confidence 357899999988877543
No 220
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=26.96 E-value=1.3e+03 Score=28.59 Aligned_cols=57 Identities=9% Similarity=0.061 Sum_probs=30.9
Q ss_pred EEecCceEEEEEcCCcEEEEeCCCCCCcCCCCCCCCCcceeeccCcccEEEEEEcCCc
Q 001480 252 IAAAKHHTVLATEGGEVFTWGSNREGQLGYTSVDTQPTPRRVSSLKLKIIAVAAANKH 309 (1071)
Q Consensus 252 IAcG~~HslaLT~dG~VyswG~N~~GQLG~g~~~~~~~P~~V~~l~~~Iv~VacG~~H 309 (1071)
+.-|.-+++++..+|.|.+ |.-+.-..-..+......+..++.-...|.-|+-|..-
T Consensus 285 aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~d 341 (626)
T KOG2106|consen 285 AHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGD 341 (626)
T ss_pred ecCCceEEEEEecCccEee-cCccceEEeccccccccccccCchhcCCeeEEecCCCc
Confidence 5557778888888888887 53322111111112223344444333467777766655
No 221
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=26.93 E-value=4.6e+02 Score=33.14 Aligned_cols=32 Identities=13% Similarity=0.104 Sum_probs=22.3
Q ss_pred EEEEecC-CceEEEEecCCcEEEEecCCCCCCC
Q 001480 190 IKLISAA-KFHSVAVTSLGEVYTWGYGRGGRLG 221 (1071)
Q Consensus 190 I~~Va~G-~~HslaLT~dG~Vy~WG~N~~GQLG 221 (1071)
|-+|+.- ...-++|..+.+||.+--|+.++|-
T Consensus 15 i~d~afkPDGsqL~lAAg~rlliyD~ndG~llq 47 (1081)
T KOG1538|consen 15 INDIAFKPDGTQLILAAGSRLLVYDTSDGTLLQ 47 (1081)
T ss_pred hheeEECCCCceEEEecCCEEEEEeCCCccccc
Confidence 4444442 3445677788899999999988774
No 222
>PF00167 FGF: Fibroblast growth factor; InterPro: IPR002348 The interleukin-1 (IL1) and heparin-binding growth factor (HBGF) families share low sequence similarity (about 25% []) but have very similar structures. Coupled with the Kunitz-type soybean trypsin inhibitors (STI), they form a structural superfamily. Despite their structural correspondence, however, they show no sequence similarity to the STI family. The crystal structures of interleukin-1 beta and HBGF1 have been solved, showing both families to have the same 12-stranded beta-sheet structure []; the beta-sheets are arranged in 3 similar lobes around a central axis, 6 strands forming an anti-parallel beta-barrel [, ]. The beta-sheets are generally well preserved and the crystal structures superimpose in these areas. The intervening loops are less well conserved - the loop between beta-strands 6 and 7 is slightly longer in interleukin-1 beta.; GO: 0008083 growth factor activity; PDB: 1AFC_F 1BAR_A 2P39_A 1EV2_D 2BFH_A 4FGF_A 1BAS_A 1BFG_A 1FQ9_B 1CVS_A ....
Probab=26.87 E-value=4.3e+02 Score=25.79 Aligned_cols=65 Identities=12% Similarity=0.051 Sum_probs=42.0
Q ss_pred EEEEEeCCCcceEEecCCcEEEEeCCCCCCceeeeeecCCceeEEE-EeCCcEEEEEeeCCcEEEec
Q 001480 398 VVSIAAGMVHSTALTEDGALFYWASSDPDLRCQQLYSMCGRNVVSI-SAGKYWTAAVTATGDVYMWD 463 (1071)
Q Consensus 398 I~~Ia~G~~hslaLt~dG~Vy~WG~n~~~~~p~~v~~l~g~~Vv~I-aaG~~htlaLT~dG~Vy~WG 463 (1071)
.+++.|-..+.+.+..||.|-.-+..........+..... .++.| .+=....++++..|.||+=.
T Consensus 2 ~~~Ly~~~~~~L~i~~~g~V~gt~~~~~~~s~~~i~~~~~-g~V~i~~~~s~~YLcmn~~G~ly~~~ 67 (122)
T PF00167_consen 2 HVQLYCRTGYFLQINPNGTVDGTGDDNSPYSVFEIHSVGF-GVVRIRGVKSCRYLCMNKCGRLYGSK 67 (122)
T ss_dssp EEEEEETTSEEEEEETTSBEEEESSTTSTTGEEEEEEEET-TEEEEEETTTTEEEEEBTTSBEEEES
T ss_pred CEEEEECCCeEEEECCCCeEeCCCCcCcceeEEEEEeccc-eEEEEEEecceEEEEECCCCeEcccc
Confidence 5678888888889999999988776633222223332222 23333 33346678899999999854
No 223
>TIGR01062 parC_Gneg DNA topoisomerase IV, A subunit, proteobacterial. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=26.67 E-value=1.2e+03 Score=30.49 Aligned_cols=139 Identities=14% Similarity=0.099 Sum_probs=0.0
Q ss_pred eeEEecCCcEEEEeCCCCCCcCCCCCCCCCcccceeeeccCCCCEEEEEecCCe--EEEEeeCCcEEEEecC-----CCC
Q 001480 310 TAVVSESGEVFTWGCNREGQLGYGTSNSASNYTPRVVESLKGKDLVGVAAAKYH--TIVLGADGERVIVARN-----LKK 382 (1071)
Q Consensus 310 SlaLT~dG~VY~WG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~I~~IaaG~~h--tlaLt~dG~Vy~wG~n-----~~~ 382 (1071)
++++|.+|.|-.---. .+.+..+..-.+..+..+..+..+ .+++|++|.+|.+..+ ...
T Consensus 497 ~VilTk~G~IKr~~~~--------------~~~~saikLKegD~L~~~~~~~t~d~LllfTs~Gr~yrf~v~eIP~GR~a 562 (735)
T TIGR01062 497 TIILSKMGWVRSAKGH--------------DIDLSTLKYKAGDSEKAIIEGKSNQKVVFIDSTGRSYALDPDNLPSARGQ 562 (735)
T ss_pred EEEEecCCEEEecccc--------------ccchhccCcCCCCeEEEEEEecCCCEEEEEECCCeEEEEEhHhcCcCccC
Q ss_pred CCCccceeccccCCcEEEEEeCCCc--ceEEecCCcEEEEeCCC------CCCceeeeeecCCceeEEEEeCCc-EEEEE
Q 001480 383 SGSTPLKFHRKIKLHVVSIAAGMVH--STALTEDGALFYWASSD------PDLRCQQLYSMCGRNVVSISAGKY-WTAAV 453 (1071)
Q Consensus 383 ~~~~p~~~~~~~~~~I~~Ia~G~~h--slaLt~dG~Vy~WG~n~------~~~~p~~v~~l~g~~Vv~IaaG~~-htlaL 453 (1071)
.......+....+..|+.+.+.... .+++|+.|..+..-.++ .+.....+..-...-......+.. +.+++
T Consensus 563 GgpV~~~L~L~~gE~Iv~~~~v~~~~~lLlaT~~GyGKrt~lse~~~~~RaGKgvi~Lk~~d~lv~v~~v~~~dd~V~li 642 (735)
T TIGR01062 563 GEPLTGKLLLPIGATITNILMYSPNQLLLMASDAGYGFLCNFNDLIARNKAGKALINLPENASVIAPLPVNGDSDMIAAI 642 (735)
T ss_pred CceeEeeecCCCCCEEEEEEEecCCcEEEEEEcCCcEEEEEhHhccccCcCCeEEEEeCCCCEEEEEEEEcCCCCEEEEE
Q ss_pred eeCCcEEEe
Q 001480 454 TATGDVYMW 462 (1071)
Q Consensus 454 T~dG~Vy~W 462 (1071)
|++|.++.+
T Consensus 643 T~~GrlLrf 651 (735)
T TIGR01062 643 TEAGRMLVF 651 (735)
T ss_pred eCCCcEEEE
No 224
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=26.33 E-value=1.6e+03 Score=29.52 Aligned_cols=204 Identities=12% Similarity=0.085 Sum_probs=100.3
Q ss_pred cCCceEEEEecCCcEEEEecCCCCC---CCCCCCccCCCCcceeeeeeeecCCCCCCEEEEEec-----CceEEEEEcCC
Q 001480 195 AAKFHSVAVTSLGEVYTWGYGRGGR---LGHPDFDIHSGQAAVITPRRVTSGLGSRRVKTIAAA-----KHHTVLATEGG 266 (1071)
Q Consensus 195 ~G~~HslaLT~dG~Vy~WG~N~~GQ---LG~g~~~~~s~~~~v~~P~~V~~~l~~~~Iv~IAcG-----~~HslaLT~dG 266 (1071)
....+.+++|+.|++|..-...--. .+.|. . ....+. ...+++|+.+.+- ....+++|.+|
T Consensus 544 ~t~d~LllfTs~Grv~~l~~~~IP~~~r~~~G~-------~---i~~ll~-L~~~E~Iv~~i~~~~~~~~~~lvliT~~G 612 (800)
T TIGR01063 544 STHDYLLFFTNRGKVYWLKVYQIPEASRTAKGK-------P---IVNLLP-LQPDERITAILSVKEFDDGLYLFFATKNG 612 (800)
T ss_pred cCCCeEEEEeCCCcEEEEEhhhCcCCCcCCCCc-------C---HHHhcc-CCCCCeEEEEEEeccCCCCCEEEEEeCCC
Confidence 3566788999999999983222111 11111 0 000111 1245677766652 23578889999
Q ss_pred cEEEEeCCCCCC---cCCCCCCCCCcceeeccCcccEEEEEE--cCCceeEEecCCcEEEEeCCCCCCcCCCCCCCCCcc
Q 001480 267 EVFTWGSNREGQ---LGYTSVDTQPTPRRVSSLKLKIIAVAA--ANKHTAVVSESGEVFTWGCNREGQLGYGTSNSASNY 341 (1071)
Q Consensus 267 ~VyswG~N~~GQ---LG~g~~~~~~~P~~V~~l~~~Iv~Vac--G~~HSlaLT~dG~VY~WG~N~~GQLG~g~~~~~~~~ 341 (1071)
.+.-.=.+.+-. .|.... .+.. +..++.+.. ...+.+++|++|++|.+-.+.--..|......
T Consensus 613 yiKRi~l~~~~~~~r~G~~ai-------klke-~D~lv~v~~~~~~d~lll~Ts~Gr~~r~~v~eIp~~gr~~~Gv---- 680 (800)
T TIGR01063 613 VVKKTSLTEFSNIRSNGIIAI-------KLDD-GDELISVRLTSGDDEVMLGSKNGKAVRFPEEDVRPMGRAARGV---- 680 (800)
T ss_pred EEEEEEhHHhhhhccCCcccc-------cCCC-CCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCCcCCCCCCe----
Confidence 777554333211 111000 0001 124444433 33467889999999998766444444322111
Q ss_pred cceeeeccCCCCEEEEEec--CCeEEEEeeCCcEEEEecC-CC--CCCCccceecccc--CCcEEEEE--eCCCcceEEe
Q 001480 342 TPRVVESLKGKDLVGVAAA--KYHTIVLGADGERVIVARN-LK--KSGSTPLKFHRKI--KLHVVSIA--AGMVHSTALT 412 (1071)
Q Consensus 342 ~P~~V~~l~~~~I~~IaaG--~~htlaLt~dG~Vy~wG~n-~~--~~~~~p~~~~~~~--~~~I~~Ia--~G~~hslaLt 412 (1071)
. .+..-.+..|+.+.+- ..+.+++|++|.+...-.. .. ......+....+. +..++.+. .+....+++|
T Consensus 681 -~-~i~L~~~E~Vv~~~~v~~~~~ll~vT~~G~~Kr~~l~e~~~~~R~~kGv~~ikl~~~~d~lv~~~~v~~~~~v~liT 758 (800)
T TIGR01063 681 -R-GIKLKNEDFVVSLLVVSEESYLLIVTENGYGKRTSIEEYRETSRGGKGVKSIKITDRNGQVVGAIAVDDDDELMLIT 758 (800)
T ss_pred -e-cccCCCCCEEEEEEEeccccEEEEEecCCcEEEEEHHHccccCCCCcceEEEEccCCCCeEEEEEEecCCCeEEEEe
Confidence 0 1222245567666543 3356778888877665422 11 1011111111111 12333322 2334577778
Q ss_pred cCCcEEEEeCC
Q 001480 413 EDGALFYWASS 423 (1071)
Q Consensus 413 ~dG~Vy~WG~n 423 (1071)
.+|.+..+-.+
T Consensus 759 ~~G~~lrf~~~ 769 (800)
T TIGR01063 759 SAGKLIRTSVQ 769 (800)
T ss_pred cCCeEEEeeHh
Confidence 88887766543
No 225
>PLN00181 protein SPA1-RELATED; Provisional
Probab=26.22 E-value=1.5e+03 Score=29.28 Aligned_cols=178 Identities=18% Similarity=0.194 Sum_probs=83.6
Q ss_pred EEEEEcCCcEEEEeCCCCCCcCCCCCCCCCcceeeccCcccEEEEEEcC-Ccee--EEecCCcEEEEeCCCCCCcCCCCC
Q 001480 259 TVLATEGGEVFTWGSNREGQLGYTSVDTQPTPRRVSSLKLKIIAVAAAN-KHTA--VVSESGEVFTWGCNREGQLGYGTS 335 (1071)
Q Consensus 259 slaLT~dG~VyswG~N~~GQLG~g~~~~~~~P~~V~~l~~~Iv~VacG~-~HSl--aLT~dG~VY~WG~N~~GQLG~g~~ 335 (1071)
.+.-..||.|..|-... +++ -..+..-...|..|+... +..+ .-..||.|..|-.+..-.+
T Consensus 548 las~~~Dg~v~lWd~~~-~~~----------~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~----- 611 (793)
T PLN00181 548 VASSNFEGVVQVWDVAR-SQL----------VTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSI----- 611 (793)
T ss_pred EEEEeCCCeEEEEECCC-CeE----------EEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEE-----
Confidence 34445689999995432 111 111122234577776642 2222 3356889999965421111
Q ss_pred CCCCcccceeeeccCCCCEEEEEe---cCCeEEEEeeCCcEEEEecCCCCCCCccceeccccCCcEEEEEeCC-CcceEE
Q 001480 336 NSASNYTPRVVESLKGKDLVGVAA---AKYHTIVLGADGERVIVARNLKKSGSTPLKFHRKIKLHVVSIAAGM-VHSTAL 411 (1071)
Q Consensus 336 ~~~~~~~P~~V~~l~~~~I~~Iaa---G~~htlaLt~dG~Vy~wG~n~~~~~~~p~~~~~~~~~~I~~Ia~G~-~hslaL 411 (1071)
..+.. ...|..+.. ...+.++-..||.|+.|-..... .+..........|..+.... ...+.-
T Consensus 612 --------~~~~~--~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~---~~~~~~~~h~~~V~~v~f~~~~~lvs~ 678 (793)
T PLN00181 612 --------GTIKT--KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPK---LPLCTMIGHSKTVSYVRFVDSSTLVSS 678 (793)
T ss_pred --------EEEec--CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCC---ccceEecCCCCCEEEEEEeCCCEEEEE
Confidence 01111 113444432 12334444568888888653211 11111111122455555432 233444
Q ss_pred ecCCcEEEEeCCCCC--CceeeeeecCC----ceeEEEEeCCcEEEEEeeCCcEEEecCC
Q 001480 412 TEDGALFYWASSDPD--LRCQQLYSMCG----RNVVSISAGKYWTAAVTATGDVYMWDGK 465 (1071)
Q Consensus 412 t~dG~Vy~WG~n~~~--~~p~~v~~l~g----~~Vv~IaaG~~htlaLT~dG~Vy~WG~N 465 (1071)
..||.|..|-..... .....+..+.+ ...+.+.......+.-..||.|++|-.+
T Consensus 679 s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~ 738 (793)
T PLN00181 679 STDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKA 738 (793)
T ss_pred ECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECC
Confidence 578999999754321 11111222222 1223333333455556679999999754
No 226
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins.
Probab=26.04 E-value=1.1e+02 Score=22.99 Aligned_cols=25 Identities=12% Similarity=0.299 Sum_probs=21.5
Q ss_pred ccEEEEEEcC-CceeEEecCCcEEEE
Q 001480 298 LKIIAVAAAN-KHTAVVSESGEVFTW 322 (1071)
Q Consensus 298 ~~Iv~VacG~-~HSlaLT~dG~VY~W 322 (1071)
..+++|++|. ....+++.+|.||..
T Consensus 8 g~l~~isvg~~~~vW~V~~~g~i~~r 33 (35)
T smart00706 8 GELVQVSVGPSDTVWAVNSDGNIYRR 33 (35)
T ss_pred CCEEEEEECCCCeEEEEcCCCCEEEE
Confidence 4799999999 888889999999864
No 227
>PF02166 Androgen_recep: Androgen receptor; InterPro: IPR001103 Steroid or nuclear hormone receptors (NRs) constitute an important super-family of transcription regulators that are involved in diverse physiological functions, including control of embryonic development, cell differentiation and homeostasis. Members include the steroid hormone receptors and receptors for thyroid hormone, retinoids and 1,25-dihydroxy-vitamin D3. The proteins function as dimeric molecules in the nucleus to regulate the transcription of target genes in a ligand-responsive manner [, ]. NRs are extremely important in medical research, a large number of them being implicated in diseases such as cancer, diabetes and hormone resistance syndromes. Many do not yet have a defined ligand and are accordingly termed "orphan" receptors. More than 300 NRs have been described to date and a new system has recently been introduced in an attempt to rationalise the increasingly complex set of names used to describe superfamily members. The androgen receptor (AR) consists of 3 functional and structural domains: an N-terminal (modulatory) domain; a DNA binding domain (IPR001628 from INTERPRO) that mediates specific binding to target DNA sequences (ligand-responsive elements); and a hormone binding domain. The N-terminal domain (NTD) is unique to the androgen receptors and spans approximately the first 530 residues; the highly-conserved DNA-binding domain is smaller (around 65 residues) and occupies the central portion of the protein; and the hormone ligand binding domain (LBD) lies at the receptor C terminus. In the absence of ligand, steroid hormone receptors are thought to be weakly associated with nuclear components; hormone binding greatly increases receptor affinity. The LBDs of steroid hormone receptors fold into 12 helices that form a ligand-binding pocket. When an agonist is bound, helix 12 folds over the pocket to enclose the ligand []. When an antagonist is unbound, helix 12 is positioned away from the pocket in a way that interferes with the binding of coactivators to a groove in the hormone-binding domain formed after ligand binding. In AR, ligand binding that induces folding of helix 12 to overlie the pocket discloses a groove that binds a region of the NTD. Coactivator molecules can also bind to this groove, but the predominant site for coactivator binding to AR is in the NTD. AR ligand resides in a pocket and primarily contacts helices 4, 5, and 10. The DNA-binding region includes eight cysteine residues that form two coordination complexes, each composed of four cysteines and a Zn2+ ion. These two zinc fingers form the structure that binds to the major groove of DNA. The second zinc finger stabilises the binding complex by hydrophobic interactions with the first finger and contributes to specificity of receptor DNA binding. It is also necessary for receptor dimerisation that occurs during DNA binding Defects in the androgen receptor cause testicular feminisation syndrome, androgen insensibility syndrome (AIS) [, ]. AIS may be complete (CAIS), where external genitalia are phenotypically female; partial (PAIS), where genitalia are substantively ambiguous; or mild (MAIS), where external genitalia are normal male, or nearly so. Defects in the receptor also cause X-linked spinal and bulbar muscular atrophy (also known as Kennedy's disease).; GO: 0003677 DNA binding, 0004882 androgen receptor activity, 0005496 steroid binding, 0006355 regulation of transcription, DNA-dependent, 0030521 androgen receptor signaling pathway, 0005634 nucleus; PDB: 1XOW_B 2Q7K_B 2Q7I_B.
Probab=25.66 E-value=23 Score=40.40 Aligned_cols=15 Identities=47% Similarity=0.756 Sum_probs=0.0
Q ss_pred ceeeeecccCCCCCC
Q 001480 869 GLSMFLSGALDDTPK 883 (1071)
Q Consensus 869 ~~~~~~~~~~~~~~~ 883 (1071)
-|||+=+|+||+++.
T Consensus 318 tlsLyksgalde~aa 332 (423)
T PF02166_consen 318 TLSLYKSGALDEAAA 332 (423)
T ss_dssp ---------------
T ss_pred ccccccccccccccc
Confidence 378888999999863
No 228
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=24.45 E-value=48 Score=39.50 Aligned_cols=136 Identities=13% Similarity=0.064 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHhhhHHHHHHHHHHcCCCccchhhhhccccCCCCCCCcCCccch
Q 001480 695 QEISKQVRALRKKLQQIEMLEVKLSNGHILDEQQIAKLQTKSVLERSLAELGVPIELPQAIAASAASPDGRGNKKAGVSK 774 (1071)
Q Consensus 695 ~~~~k~~r~l~kkl~~ie~l~~k~~~g~~l~~~q~~k~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 774 (1071)
...-...++|.-.+.-.|..+.-.+.--.--.+-++|++++-.-++|+..+ ..++.--.+.++++
T Consensus 357 e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~---------------l~knq~vw~~kl~~ 421 (493)
T KOG0804|consen 357 ELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKK---------------LIKNQDVWRGKLKE 421 (493)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHhhHHHHHHHHHH
Q ss_pred hhhhhhhhhhheeeccccccccccCcccccccccchhhhccccchhhhhccccccccccc-cccceecccCcccccccCC
Q 001480 775 KQKKKSKQKAAQVEAVSDFSVSEVGSNAAKDFFDTEITEVSKKKEEDAMSEGNVAIEYSK-QSGFLVQKKDNADSLKNNC 853 (1071)
Q Consensus 775 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 853 (1071)
.+.+.+....+ .|..+.|+.+-+. ++.-...+.+-.| +.+ -+|.-++....-...
T Consensus 422 ~~e~~~~~~~s------------------~d~~I~dLqEQlr-----Dlmf~le~qqklk~dt~-eIqegtI~~~~~s~~ 477 (493)
T KOG0804|consen 422 LEEREKEALGS------------------KDEKITDLQEQLR-----DLMFFLEAQQKLKSDTD-EIQEGTILITQISPS 477 (493)
T ss_pred HHHHHHHHHHH------------------HHHHHHHHHHHHH-----hHheehhhhhhhhcchh-hhcCceeeccCCCCC
Q ss_pred CCCcccccccccccCc
Q 001480 854 SPQTTSKKKNKNKKGG 869 (1071)
Q Consensus 854 ~~~~~~~~~~~~~~~~ 869 (1071)
++..+++||++|||+|
T Consensus 478 ~~~~~~~kkk~nrrk~ 493 (493)
T KOG0804|consen 478 SSSSVKSKKKSNRRKK 493 (493)
T ss_pred ccccccchhhhcccCC
No 229
>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].
Probab=24.16 E-value=31 Score=30.94 Aligned_cols=47 Identities=23% Similarity=0.279 Sum_probs=39.1
Q ss_pred cHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCccccccccccccccchhhhhcc
Q 001480 66 TPLHSAIWRNQVPIVRRLLAAGADPDARDGESGWSSLHRALHFGHLAVASVLLQS 120 (1071)
Q Consensus 66 TpLH~Aa~~g~~eivk~LL~~GAd~n~~d~~~G~TpL~~A~~~g~~~vv~lLl~~ 120 (1071)
.-|.+|+..|+.++++.+++.+ .++ ...+..|....+.+++.+|++.
T Consensus 8 ~tl~~Ai~GGN~eII~~c~~~~-~~~-------~~~l~~AI~~H~n~i~~~l~~~ 54 (76)
T PF11929_consen 8 KTLEYAIIGGNFEIINICLKKN-KPD-------NDCLEYAIKSHNNEIADWLIEN 54 (76)
T ss_pred HHHHHHHhCCCHHHHHHHHHHh-ccH-------HHHHHHHHHHhhHHHHHHHHHh
Confidence 4588999999999999999766 322 2479999999999999999875
No 230
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=24.12 E-value=2.6e+02 Score=31.57 Aligned_cols=104 Identities=17% Similarity=0.273 Sum_probs=53.2
Q ss_pred CCeEEEEeeCCcEEEEecCCCCCCCccceeccc------cCCcEEEEEeC--CCcceEEecCCcEEEEeCCCCCCc--ee
Q 001480 361 KYHTIVLGADGERVIVARNLKKSGSTPLKFHRK------IKLHVVSIAAG--MVHSTALTEDGALFYWASSDPDLR--CQ 430 (1071)
Q Consensus 361 ~~htlaLt~dG~Vy~wG~n~~~~~~~p~~~~~~------~~~~I~~Ia~G--~~hslaLt~dG~Vy~WG~n~~~~~--p~ 430 (1071)
..|+++. .++++|.||.-+.......+..... ....|....-| ..|++++- .+++|++|.-+.+.. ..
T Consensus 80 YGHtvV~-y~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~-gn~MyiFGGye~~a~~FS~ 157 (392)
T KOG4693|consen 80 YGHTVVE-YQDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVW-GNQMYIFGGYEEDAQRFSQ 157 (392)
T ss_pred cCceEEE-EcceEEEEcCccCcccccceeeeeccccccccccceeeecCCccCCceeeEE-CcEEEEecChHHHHHhhhc
Confidence 4577666 6889999985444333333221111 11244444444 57888775 458999996542210 11
Q ss_pred ee--eecCCceeEEEEe-------CCcEEEEEeeCCcEEEecCCCC
Q 001480 431 QL--YSMCGRNVVSISA-------GKYWTAAVTATGDVYMWDGKKS 467 (1071)
Q Consensus 431 ~v--~~l~g~~Vv~Iaa-------G~~htlaLT~dG~Vy~WG~N~~ 467 (1071)
.+ ..+.-.....|.. -+.|+..+- +|.+|++|+..+
T Consensus 158 d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~-~~~MYiFGGR~D 202 (392)
T KOG4693|consen 158 DTHVLDFATMTWREMHTKGDPPRWRDFHTASVI-DGMMYIFGGRSD 202 (392)
T ss_pred cceeEeccceeeeehhccCCCchhhhhhhhhhc-cceEEEeccccc
Confidence 11 1111112222221 235666554 499999997653
No 231
>PF12017 Tnp_P_element: Transposase protein; InterPro: IPR021896 Protein in this family are transposases found in insects. This region is about 230 amino acids in length and is found associated with PF05485 from PFAM.
Probab=23.99 E-value=97 Score=34.34 Aligned_cols=37 Identities=32% Similarity=0.578 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHhhh
Q 001480 696 EISKQVRALRKKLQQIEMLEVKLSNGHILDEQQIAKLQT 734 (1071)
Q Consensus 696 ~~~k~~r~l~kkl~~ie~l~~k~~~g~~l~~~q~~k~~~ 734 (1071)
..+|+++.|+++|..++.|+..+ ...+..+||+.|..
T Consensus 29 ~le~~l~~Lk~~l~~~~~l~~~L--~~~Fs~~Qi~~lk~ 65 (236)
T PF12017_consen 29 RLEKELKKLKQKLEKYQKLENSL--KQIFSEDQIRNLKN 65 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHhCcHHHHHHHhc
Confidence 56666777777777777777655 45678888887754
No 232
>COG5420 Uncharacterized conserved small protein containing a coiled-coil domain [Function unknown]
Probab=23.04 E-value=3.8e+02 Score=23.66 Aligned_cols=52 Identities=31% Similarity=0.372 Sum_probs=39.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHhhhH--------HHHHHHHHHc
Q 001480 694 NQEISKQVRALRKKLQQIEMLEVKLSNGHILDEQQIAKLQTK--------SVLERSLAEL 745 (1071)
Q Consensus 694 ~~~~~k~~r~l~kkl~~ie~l~~k~~~g~~l~~~q~~k~~~~--------~~~~~~l~~l 745 (1071)
.++++||||.|+-|-.|..+==.-.+.|-..+=+||.-+..+ .+++.||+.|
T Consensus 8 l~eiqkKvrkLqsrAg~akm~LhDLAEgLP~~wtei~~VA~kt~~~yaeLD~~k~ELakl 67 (71)
T COG5420 8 LEEIQKKVRKLQSRAGQAKMELHDLAEGLPVKWTEIMAVAEKTFEAYAELDAAKRELAKL 67 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHhccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 468899999999998888777777788888888888877654 3455566554
No 233
>TIGR01061 parC_Gpos DNA topoisomerase IV, A subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=22.55 E-value=1.7e+03 Score=29.04 Aligned_cols=115 Identities=9% Similarity=0.095 Sum_probs=60.6
Q ss_pred EEcCCceeEEecCCcEEEEeCCCCCCcCCCCCCCCCcccceeeeccCCCCEEEEEecCC------eEEEEeeCCcEEEEe
Q 001480 304 AAANKHTAVVSESGEVFTWGCNREGQLGYGTSNSASNYTPRVVESLKGKDLVGVAAAKY------HTIVLGADGERVIVA 377 (1071)
Q Consensus 304 acG~~HSlaLT~dG~VY~WG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~I~~IaaG~~------htlaLt~dG~Vy~wG 377 (1071)
+.+..+.+++|.+|.+|.+-...--..|..... ......+..-.+..|+.+.+-.. +.+++|++|.+...-
T Consensus 539 ~~~~d~IllfT~~Gkv~r~~~~eIp~~gr~a~G---v~Ivk~i~L~~~D~Iv~~~~v~~~~~~~~~ll~vT~~G~~KRt~ 615 (738)
T TIGR01061 539 ANTTDQILIFTSLGNIINIPVHKLADIRWKDLG---EHLSNKITFDENETIVFVGTMNEFDVDQPILVLASKLGMVKRIE 615 (738)
T ss_pred ecCCCEEEEEeCCCcEEEEEHHHCcCCCCCCCC---cChhhcccCCCCCeEEEEEEeccccCCCcEEEEEecCCeEEEeE
Confidence 344556788999999999876544443332211 11122233234566777666432 578888999766543
Q ss_pred cCC----C-CCCCccceeccccCCcEEE--EEeCCCcceEEecCCcEEEEeCC
Q 001480 378 RNL----K-KSGSTPLKFHRKIKLHVVS--IAAGMVHSTALTEDGALFYWASS 423 (1071)
Q Consensus 378 ~n~----~-~~~~~p~~~~~~~~~~I~~--Ia~G~~hslaLt~dG~Vy~WG~n 423 (1071)
-.. . ..+..-..+. .+..++. +..+..+.+++|.+|.+..+-.+
T Consensus 616 l~e~~~~r~~kGv~~ikLk--~~d~lV~a~~v~~~d~IlliT~~G~~iRf~~~ 666 (738)
T TIGR01061 616 LTELNIKRNSKATLCIKLK--DKDHLISAFLQQKDKLICLVSDLGYALVFHTN 666 (738)
T ss_pred HHHhccccCCCceEEEecc--CCCcEEEEEEeCCCCEEEEEECCCeEEEEEHH
Confidence 211 0 1111111111 1122222 22355678888999988776543
No 234
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=22.54 E-value=1.1e+03 Score=29.11 Aligned_cols=157 Identities=17% Similarity=0.155 Sum_probs=81.3
Q ss_pred cEEEEEEcCCceeEEecCCcEEEEeCCCCCCcCCCCCCCCCcccceeeeccCCCCEEEEEecCCeE----EEE--eeCCc
Q 001480 299 KIIAVAAANKHTAVVSESGEVFTWGCNREGQLGYGTSNSASNYTPRVVESLKGKDLVGVAAAKYHT----IVL--GADGE 372 (1071)
Q Consensus 299 ~Iv~VacG~~HSlaLT~dG~VY~WG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~I~~IaaG~~ht----laL--t~dG~ 372 (1071)
.-.-|..|.....+++.+|..++ .- -.|+... +-+.. ..-.|..+.||..|- .+| ..||.
T Consensus 227 ~~iLvvsg~aqakl~DRdG~~~~--e~-----~KGDQYI------~Dm~n-TKGHia~lt~g~whP~~k~~FlT~s~Dgt 292 (641)
T KOG0772|consen 227 DQILVVSGSAQAKLLDRDGFEIV--EF-----SKGDQYI------RDMYN-TKGHIAELTCGCWHPDNKEEFLTCSYDGT 292 (641)
T ss_pred CeEEEEecCcceeEEccCCceee--ee-----eccchhh------hhhhc-cCCceeeeeccccccCcccceEEecCCCc
Confidence 34456778888888888885442 11 1111100 00111 112577777876543 233 35888
Q ss_pred EEEEecCCCCCCCccceeccccCCcEEEEEeCCCc----ceEEecCCcEEEEeCCCCCCceeee---eecCCceeEEEEe
Q 001480 373 RVIVARNLKKSGSTPLKFHRKIKLHVVSIAAGMVH----STALTEDGALFYWASSDPDLRCQQL---YSMCGRNVVSISA 445 (1071)
Q Consensus 373 Vy~wG~n~~~~~~~p~~~~~~~~~~I~~Ia~G~~h----slaLt~dG~Vy~WG~n~~~~~p~~v---~~l~g~~Vv~Iaa 445 (1071)
+-.|--|.......-++.....+.+|.--.|-++. .++-..||.|-+|-.......|... ....+..|+.|+.
T Consensus 293 lRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~F 372 (641)
T KOG0772|consen 293 LRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISF 372 (641)
T ss_pred EEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEe
Confidence 99997664433222222111222333333333221 3333467888888764433333222 2345556777777
Q ss_pred CCcEEEEEe--eCCcEEEecCCCCCC
Q 001480 446 GKYWTAAVT--ATGDVYMWDGKKSKD 469 (1071)
Q Consensus 446 G~~htlaLT--~dG~Vy~WG~N~~~~ 469 (1071)
...--.+++ .|+.+-+|.....+.
T Consensus 373 S~dg~~LlSRg~D~tLKvWDLrq~kk 398 (641)
T KOG0772|consen 373 SYDGNYLLSRGFDDTLKVWDLRQFKK 398 (641)
T ss_pred ccccchhhhccCCCceeeeecccccc
Confidence 665555554 567888898655443
No 235
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=21.87 E-value=1e+03 Score=25.62 Aligned_cols=135 Identities=16% Similarity=0.232 Sum_probs=60.5
Q ss_pred EEEEeeCCcEEEEecCCCCCCCc--cceeccccCCcEEEEEeC--CCcceEEecCCc-EEEEeCCCCCCceeeeee----
Q 001480 364 TIVLGADGERVIVARNLKKSGST--PLKFHRKIKLHVVSIAAG--MVHSTALTEDGA-LFYWASSDPDLRCQQLYS---- 434 (1071)
Q Consensus 364 tlaLt~dG~Vy~wG~n~~~~~~~--p~~~~~~~~~~I~~Ia~G--~~hslaLt~dG~-Vy~WG~n~~~~~p~~v~~---- 434 (1071)
-++++.+|.+|+--......... ...+.......+..+..+ ..+.++++.+|+ +|+--+....+.--.+..
T Consensus 90 D~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~ 169 (246)
T PF08450_consen 90 DVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPDGKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGE 169 (246)
T ss_dssp EEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETTSEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCC
T ss_pred eEEEcCCCCEEEEecCCCccccccccceEEECCCCeEEEEecCcccccceEECCcchheeecccccceeEEEeccccccc
Confidence 35677788887765443222211 111111111244444444 344678888886 454433332211111100
Q ss_pred cCC-ceeEEEEeCC--cEEEEEeeCCcEEEe--cCCC-----CCCCCCceEEecCcccEEEEEec--CCeEEEEEeC
Q 001480 435 MCG-RNVVSISAGK--YWTAAVTATGDVYMW--DGKK-----SKDNPPLVTRLHGIKKATSVSVG--ETHLLIVGSL 499 (1071)
Q Consensus 435 l~g-~~Vv~IaaG~--~htlaLT~dG~Vy~W--G~N~-----~~~~~~~p~~v~g~~~V~~Va~G--~~HtlaL~s~ 499 (1071)
+.. ..+..+..+. --.++++.+|.||+- +.+. .......-..++ ..+++.++.| ..++++|++.
T Consensus 170 ~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~G~~~~~i~~p-~~~~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 170 LSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPDGKLLREIELP-VPRPTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp EEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETTSCEEEEEE-S-SSSEEEEEEESTTSSEEEEEEB
T ss_pred eeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCCccEEEEEcCC-CCCEEEEEEECCCCCEEEEEeC
Confidence 000 1122233332 456888999999975 4332 011112223444 3478888886 4577877763
No 236
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=21.78 E-value=2.2e+02 Score=34.29 Aligned_cols=47 Identities=23% Similarity=0.285 Sum_probs=35.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHhhhHHHHHH
Q 001480 694 NQEISKQVRALRKKLQQIEMLEVKLSNGHILDEQQIAKLQTKSVLER 740 (1071)
Q Consensus 694 ~~~~~k~~r~l~kkl~~ie~l~~k~~~g~~l~~~q~~k~~~~~~~~~ 740 (1071)
+.+.+|++|.-+++|-+|+++++-...-..++++++++=-++..+++
T Consensus 69 Eta~ekr~RlA~e~L~~i~e~~E~~~d~~~~~~e~va~rLked~le~ 115 (479)
T KOG0299|consen 69 ETAGEKRLRLAEEYLDEIREIEEDNFDADDLDDELVASRLKEDVLEQ 115 (479)
T ss_pred cchhHHHHHHHHHHHHHHHhhhhcccccchhhHHHHHHHHHHHHHHh
Confidence 56889999999999999987777444445677788877655555554
No 237
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=21.73 E-value=7.2e+02 Score=33.84 Aligned_cols=159 Identities=19% Similarity=0.228 Sum_probs=78.9
Q ss_pred ccEEEEEEcCCc-eeEE--ecCCcEEEEeCCCCCCcCCC-CCCCCCcccceeeeccCCCCEEEE-EecCCeEEEE-eeCC
Q 001480 298 LKIIAVAAANKH-TAVV--SESGEVFTWGCNREGQLGYG-TSNSASNYTPRVVESLKGKDLVGV-AAAKYHTIVL-GADG 371 (1071)
Q Consensus 298 ~~Iv~VacG~~H-SlaL--T~dG~VY~WG~N~~GQLG~g-~~~~~~~~~P~~V~~l~~~~I~~I-aaG~~htlaL-t~dG 371 (1071)
..+.+++....| ++++ .+||.|-+|-.- --.|.+ ...+ ...-...+.++.++ .|+..+.+|+ ++||
T Consensus 1049 ~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~--k~~~~~~s~rS------~ltys~~~sr~~~vt~~~~~~~~Av~t~DG 1120 (1431)
T KOG1240|consen 1049 SAVIKLAVSSEHTSLFVSGSDDGTVKVWNLR--KLEGEGGSARS------ELTYSPEGSRVEKVTMCGNGDQFAVSTKDG 1120 (1431)
T ss_pred ccccceeecCCCCceEEEecCCceEEEeeeh--hhhcCcceeee------eEEEeccCCceEEEEeccCCCeEEEEcCCC
Confidence 456788888889 7776 478999999543 222332 1111 11112234455555 3455555444 6788
Q ss_pred cEEEEecCCCCCC-Ccc--ceeccc-cCCcEEEEEeCC----C-cceEEecCCcEEEEeCCCCCCceeeeeecCCceeEE
Q 001480 372 ERVIVARNLKKSG-STP--LKFHRK-IKLHVVSIAAGM----V-HSTALTEDGALFYWASSDPDLRCQQLYSMCGRNVVS 442 (1071)
Q Consensus 372 ~Vy~wG~n~~~~~-~~p--~~~~~~-~~~~I~~Ia~G~----~-hslaLt~dG~Vy~WG~n~~~~~p~~v~~l~g~~Vv~ 442 (1071)
.|-..+-+..... ... ..++.. ....++.+-+-. . -.++.|..+.+..|+..........-..+...-|+.
T Consensus 1121 ~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTS 1200 (1431)
T KOG1240|consen 1121 SVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTS 1200 (1431)
T ss_pred eEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeE
Confidence 8776665432111 111 111111 112344433222 2 345677888999998643110000011122223555
Q ss_pred EEeC--CcEEEEEeeCCcEEEecC
Q 001480 443 ISAG--KYWTAAVTATGDVYMWDG 464 (1071)
Q Consensus 443 IaaG--~~htlaLT~dG~Vy~WG~ 464 (1071)
|+.- ..+.+.=|+.|.+.+|..
T Consensus 1201 i~idp~~~WlviGts~G~l~lWDL 1224 (1431)
T KOG1240|consen 1201 IVIDPWCNWLVIGTSRGQLVLWDL 1224 (1431)
T ss_pred EEecCCceEEEEecCCceEEEEEe
Confidence 5432 234444567888889973
No 238
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=21.65 E-value=1.4e+03 Score=27.24 Aligned_cols=195 Identities=13% Similarity=0.146 Sum_probs=92.2
Q ss_pred eEEEEec-CCceEEEEecCCcEEEEecCCCCCCCCCCCccCCCCcceeeeeeee-cCCCCCCEEEEEecCceEEEEEcCC
Q 001480 189 VIKLISA-AKFHSVAVTSLGEVYTWGYGRGGRLGHPDFDIHSGQAAVITPRRVT-SGLGSRRVKTIAAAKHHTVLATEGG 266 (1071)
Q Consensus 189 ~I~~Va~-G~~HslaLT~dG~Vy~WG~N~~GQLG~g~~~~~s~~~~v~~P~~V~-~~l~~~~Iv~IAcG~~HslaLT~dG 266 (1071)
+|+.+.- -..+.++|+++|.++.+. -.|.. .+ ..+..+. ......+|-.+..+.+-.++||.++
T Consensus 82 ~iv~~~wt~~e~LvvV~~dG~v~vy~--~~G~~---~f---------sl~~~i~~~~v~e~~i~~~~~~~~GivvLt~~~ 147 (410)
T PF04841_consen 82 RIVGMGWTDDEELVVVQSDGTVRVYD--LFGEF---QF---------SLGEEIEEEKVLECRIFAIWFYKNGIVVLTGNN 147 (410)
T ss_pred CEEEEEECCCCeEEEEEcCCEEEEEe--CCCce---ee---------chhhhccccCcccccccccccCCCCEEEECCCC
Confidence 4555544 366888999999988873 33332 11 0111111 0111223444455656688999999
Q ss_pred cEEEEeCCCCCCcCCCCCCCCCcceeeccC---c--ccEEEEEEcCCceeE-EecCCcEEEEeCCCCCCcCCCCCCCCCc
Q 001480 267 EVFTWGSNREGQLGYTSVDTQPTPRRVSSL---K--LKIIAVAAANKHTAV-VSESGEVFTWGCNREGQLGYGTSNSASN 340 (1071)
Q Consensus 267 ~VyswG~N~~GQLG~g~~~~~~~P~~V~~l---~--~~Iv~VacG~~HSla-LT~dG~VY~WG~N~~GQLG~g~~~~~~~ 340 (1071)
++|..=+... .+=.... ...|...... . ..+ ..-.+.....+ +..++.++.--.+...+
T Consensus 148 ~~~~v~n~~~-~~~~~~~--~~~p~~~~~~~~~~~~~~i-~~l~~~~~~~i~~~~g~~i~~i~~~~~~~----------- 212 (410)
T PF04841_consen 148 RFYVVNNIDE-PVKLRRL--PEIPGLWTKFHWWPSWTVI-PLLSSDRVVEILLANGETIYIIDENSFKQ----------- 212 (410)
T ss_pred eEEEEeCccc-cchhhcc--ccCCCcccccccccccccc-eEeecCcceEEEEecCCEEEEEEcccccc-----------
Confidence 9998733321 1000000 0112211111 0 112 12233333323 33344555443322211
Q ss_pred ccceeeeccCCCCEEEEEec--CCeEEEEeeCCcEEEEecCCCCCCCccceeccccCC-cEEEEEeCCCcceEEecCCcE
Q 001480 341 YTPRVVESLKGKDLVGVAAA--KYHTIVLGADGERVIVARNLKKSGSTPLKFHRKIKL-HVVSIAAGMVHSTALTEDGAL 417 (1071)
Q Consensus 341 ~~P~~V~~l~~~~I~~IaaG--~~htlaLt~dG~Vy~wG~n~~~~~~~p~~~~~~~~~-~I~~Ia~G~~hslaLt~dG~V 417 (1071)
+. ...++..|+.. ..+.++++.+|.+|..-...... -..+...... ...-..||.. ++++.-...|
T Consensus 213 -----i~--~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~---~~e~~~~~~~~p~~~~WCG~d-av~l~~~~~l 281 (410)
T PF04841_consen 213 -----ID--SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEK---LCEFDTDSKSPPKQMAWCGND-AVVLSWEDEL 281 (410)
T ss_pred -----cc--CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccce---eEEeecCcCCCCcEEEEECCC-cEEEEeCCEE
Confidence 11 12356666655 46777788899999876543321 1122211112 3334467764 5555556678
Q ss_pred EEEeCC
Q 001480 418 FYWASS 423 (1071)
Q Consensus 418 y~WG~n 423 (1071)
+..|..
T Consensus 282 ~lvg~~ 287 (410)
T PF04841_consen 282 LLVGPD 287 (410)
T ss_pred EEECCC
Confidence 887744
No 239
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=21.18 E-value=4e+02 Score=31.23 Aligned_cols=19 Identities=11% Similarity=0.171 Sum_probs=13.4
Q ss_pred CcceEEecCCcEEEEeCCC
Q 001480 406 VHSTALTEDGALFYWASSD 424 (1071)
Q Consensus 406 ~hslaLt~dG~Vy~WG~n~ 424 (1071)
.|+++...+|.||++|...
T Consensus 131 ~~~~~~~~~~~IYv~GG~~ 149 (376)
T PRK14131 131 GHVAVSLHNGKAYITGGVN 149 (376)
T ss_pred ceEEEEeeCCEEEEECCCC
Confidence 3555554689999999753
No 240
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=20.36 E-value=81 Score=37.57 Aligned_cols=49 Identities=14% Similarity=0.258 Sum_probs=28.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHhhhHHHHHHHHHHcCCCccc
Q 001480 695 QEISKQVRALRKKLQQIEMLEVKLSNGHILDEQQIAKLQTKSVLERSLAELGVPIEL 751 (1071)
Q Consensus 695 ~~~~k~~r~l~kkl~~ie~l~~k~~~g~~l~~~q~~k~~~~~~~~~~l~~l~~~~~~ 751 (1071)
.+.+.-+|-+...|..|-.++++...-..+ .+=..+.+.|-.|||=...
T Consensus 105 ~elad~LkPI~e~i~eI~~fkE~nRkS~~F--------NhLsav~e~i~algWVav~ 153 (480)
T KOG2675|consen 105 NELADLLKPINEEIGEINNFKEKNRKSPFF--------NHLSAVSESIPALGWVAVK 153 (480)
T ss_pred HHHHHHhhhHHHhhhHHhhhhhcccCchHH--------HHHHHHHhhcccceeEecC
Confidence 345555666666666666666655433332 3345677777788775443
No 241
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=20.11 E-value=1.3e+02 Score=29.01 Aligned_cols=15 Identities=27% Similarity=0.554 Sum_probs=11.1
Q ss_pred hHHHHHHHHHHHHHH
Q 001480 696 EISKQVRALRKKLQQ 710 (1071)
Q Consensus 696 ~~~k~~r~l~kkl~~ 710 (1071)
-...+|++|++||.+
T Consensus 69 ~EkEqL~~Lk~kl~~ 83 (100)
T PF04568_consen 69 KEKEQLKKLKEKLKE 83 (100)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 345678888888877
Done!