Query 001480
Match_columns 1071
No_of_seqs 492 out of 3790
Neff 6.4
Searched_HMMs 29240
Date Tue Mar 26 15:49:28 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001480.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_783-787//hhsearch_pdb/001480hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kci_A Probable E3 ubiquitin-p 1.0 1 1 480.2 30.1 336 155-499 20-387 (389)
2 4d9s_A UVB-resistance protein 1.0 1 1 460.4 38.1 305 155-468 35-359 (406)
3 3mvd_K Regulator of chromosome 1.0 1 1 458.3 39.1 331 155-499 43-418 (423)
4 3of7_A Regulator of chromosome 1.0 1 1 457.7 37.3 340 155-499 29-450 (473)
5 1a12_A RCC1, regulator of chro 1.0 1 1 455.2 37.8 333 155-499 27-409 (413)
6 4d9s_A UVB-resistance protein 1.0 1 1 451.6 37.3 325 187-521 15-368 (406)
7 3of7_A Regulator of chromosome 1.0 1 1 432.1 30.0 326 188-518 10-413 (473)
8 3kci_A Probable E3 ubiquitin-p 1.0 1 1 421.8 31.6 293 155-456 72-387 (389)
9 1a12_A RCC1, regulator of chro 1.0 1 1 418.6 32.8 315 192-519 12-374 (413)
10 3mvd_K Regulator of chromosome 1.0 1 1 416.3 34.7 319 187-520 23-384 (423)
No 1
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=1.00 E-value=1 Score=480.17 Aligned_cols=336 Identities=28% Similarity=0.492 Sum_probs=294.6
Q ss_pred CEEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCEEEEEECCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCE
Q ss_conf 10211267764235778765556871220578942999802896599992399099984189997799997667787503
Q 001480 155 TEVFSWGSGANYQLGTGNAHLQKLPCKVDSLHGFVIKLISAAKFHSVAVTSLGEVYTWGYGRGGRLGHPDFDIHSGQAAV 234 (1071)
Q Consensus 155 g~VysWG~N~~GQLG~g~~~~~~~P~~I~~l~~~~Iv~VaaG~~hs~aLt~dG~Vy~WG~N~~GQLG~g~~~~~~~~~~v 234 (1071)
|+||+||.|.+||||.+.......|++++.+.+.+|++|+||..|+++|+++|+||+||.|.+||||.+.. ...
T Consensus 20 G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~------~~~ 93 (389)
T 3kci_A 20 GTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYGAGGRLGIGGT------ESV 93 (389)
T ss_dssp -CEEEEEECTTSTTSSCSCSEEEEEEECHHHHHTCEEEEEEETTEEEEEETTSCEEEEECCGGGTTSSSSS------CCE
T ss_pred CEEEEEECCCCCCCCCCCCCCCCCCEECCCCCCCCEEEEEECCCEEEEECCCCCEEEEECCCCCCCCCCCC------CCC
T ss_conf 86997038997518989686642777601346786599984777399995898199988999988898996------773
Q ss_pred EEEEEEECCCCCC--CEEEEEECCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCEEECCCC-CCEEEEEECCCCEE
Q ss_conf 3204640588999--97999856865899982991999938999976888998878650322676-65899997688406
Q 001480 235 ITPRRVTSGLGSR--RVKTIAAAKHHTVLATEGGEVFTWGSNREGQLGYTSVDTQPTPRRVSSLK-LKIIAVAAANKHTA 311 (1071)
Q Consensus 235 ~~P~~V~~~l~~~--~Iv~IaaG~~HslaLT~dG~VyswG~N~~GQLG~gs~~~~~~P~~V~~l~-~~Iv~VaaG~~HSi 311 (1071)
..|..+. .+... ++++|+||.+|+++|+++|+||+||.|.+||||.+.......|+.+..+. .+|++|+||..|++
T Consensus 94 ~~p~~v~-~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G~~hs~ 172 (389)
T 3kci_A 94 STPTLLE-SIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGAHSA 172 (389)
T ss_dssp EEEEECG-GGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEE
T ss_pred CCCEECC-CCCCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEEECCCEEE
T ss_conf 3777711-015773259998768774999948997999729989867899875675876843668973999971758589
Q ss_pred EEECCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEECC--CEEEEEEECCCEEEEECCCCCCCC----
Q ss_conf 88208919999489999767899899876665034126899789999338--739999608969999337888898----
Q 001480 312 VVSESGEVFTWGCNREGQLGYGTSNSASNYTPRVVESLKGKDLVGVAAAK--YHTIVLGADGERVIVARNLKKSGS---- 385 (1071)
Q Consensus 312 aLt~dG~VYsWG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~I~~IaaG~--~hTivLt~dG~Vy~wG~n~~~~~~---- 385 (1071)
+|+++|+||+||.|.+||||+++... ...|..+..+.+.+|++|+||. .|+++|+.+|+||+||.|..++..
T Consensus 173 alt~~G~v~~wG~n~~GqLG~~~~~~--~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~ 250 (389)
T 3kci_A 173 CVTAAGDLYTWGKGRYGRLGHSDSED--QLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGS 250 (389)
T ss_dssp EEETTSCEEEEECCGGGTTCSSSCCC--EEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSC
T ss_pred EEECCCEEEEECCCCCCCCCCCCCCC--CCCCEEECCCCCCEEEEEEECCCCCEEEEECCCCEEEEEECCCCCCCCCCCC
T ss_conf 99489808994899888768999866--0455685045898399999768985899990599799973998887798998
Q ss_pred ----CCCEECCCCCCCEEEEEECCCCCEEEECCCCEEEEECCCCC----------CCEEEEEECCCCEEEEEEECCCEEE
Q ss_conf ----54223013687599999679820688269839998089999----------7202310037960599971795899
Q 001480 386 ----TPLKFHRKIKLHVVSIAAGMVHSTALTEDGALFYWASSDPD----------LRCQQLYSMCGRNVVSISAGKYWTA 451 (1071)
Q Consensus 386 ----~p~~~~~~~~~~Iv~IaaG~~hslaLT~dG~Vy~WGsn~~~----------~~p~~v~~l~g~~Vv~IaaG~~hs~ 451 (1071)
.|..+..+...+|++|+||..|+++|+++|+||+||.|..+ ..|..+..+.+.+|++|+||.+|++
T Consensus 251 ~~~~~p~~v~~~~~~~v~~v~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G~~h~~ 330 (389)
T 3kci_A 251 DGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGSLHCV 330 (389)
T ss_dssp CCEEEEEECGGGTTSCEEEEEEETTEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEE
T ss_pred CCCCCCEEECCCCCCCEEEEECCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEECCCEEE
T ss_conf 88544679546689967999479987999958993999858999888899986620875851479998899994457099
Q ss_pred EEEECCCEEEECCCCCCC-------CCCCEEEECCC--CCEEEEEECCCEEEEEEEC
Q ss_conf 995089499966999999-------99843774686--5489999438748999807
Q 001480 452 AVTATGDVYMWDGKKSKD-------NPPLVTRLHGI--KKATSVSVGETHLLIVGSL 499 (1071)
Q Consensus 452 aLT~dG~Vy~WG~N~~~~-------~~~~p~~v~~~--~~V~~Va~G~~HtivL~s~ 499 (1071)
+++++|+||+||.|..++ ....|..+..+ .+|++|+||.+|+++|+..
T Consensus 331 al~~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~v~~va~G~~ht~al~~~ 387 (389)
T 3kci_A 331 CCTEDGEVYTWGDNDEGQLGDGTTNAIQRPRLVAALQGKKVNRVACGSAHTLAWSTS 387 (389)
T ss_dssp EEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCCCEEEEETTEEEEECC-
T ss_pred EECCCCCEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEECCCCEEEEECC
T ss_conf 998999899803899886889898774676791135899879999667828999469
No 2
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=1.00 E-value=1 Score=460.41 Aligned_cols=305 Identities=32% Similarity=0.534 Sum_probs=176.6
Q ss_pred CEEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCEEEEEECCCCEEEEEECCC-CEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 10211267764235778765556871220578942999802896599992399-09998418999779999766778750
Q 001480 155 TEVFSWGSGANYQLGTGNAHLQKLPCKVDSLHGFVIKLISAAKFHSVAVTSLG-EVYTWGYGRGGRLGHPDFDIHSGQAA 233 (1071)
Q Consensus 155 g~VysWG~N~~GQLG~g~~~~~~~P~~I~~l~~~~Iv~VaaG~~hs~aLt~dG-~Vy~WG~N~~GQLG~g~~~~~~~~~~ 233 (1071)
++||+||.|.+||||.+.......|.++..+.+.+|++|+||..|+++|+++| +||+||.|.+||||.+.. ..
T Consensus 35 g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G~~ht~al~~~gg~v~~wG~n~~GqLG~g~~------~~ 108 (406)
T 4d9s_A 35 DIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNS------SD 108 (406)
T ss_dssp TEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTTTEEEEEECCGGGTTCSSSC------CC
T ss_pred CEEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEECCCEEEEEECCCCEEEEECCCCCCCCCCCCC------CC
T ss_conf 989998699998889798655738878224689978999828450899988899899975998868998998------76
Q ss_pred EEEEEEEECCCCCCCEEEEEECCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCEEECCCC-CCEEEEEECCCCEEE
Q ss_conf 3320464058899997999856865899982991999938999976888998878650322676-658999976884068
Q 001480 234 VITPRRVTSGLGSRRVKTIAAAKHHTVLATEGGEVFTWGSNREGQLGYTSVDTQPTPRRVSSLK-LKIIAVAAANKHTAV 312 (1071)
Q Consensus 234 v~~P~~V~~~l~~~~Iv~IaaG~~HslaLT~dG~VyswG~N~~GQLG~gs~~~~~~P~~V~~l~-~~Iv~VaaG~~HSia 312 (1071)
...|.++. .+...+|++|+||.+|+++|+++|+||+||.|.+||||.+.......|+++..+. .+|++|+||.+|+++
T Consensus 109 ~~~p~~v~-~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~i~~va~G~~hs~a 187 (406)
T 4d9s_A 109 LFTPLPIK-ALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAA 187 (406)
T ss_dssp EEEEEECG-GGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEE
T ss_pred CCCCEEEC-CCCCCCEEEEEECHHHEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEECCCCEEEE
T ss_conf 46106841-46899889999770465897389859990799875477989877552357435689738999647873999
Q ss_pred EECCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEECCCEEEEEEECCCEEEEECCCCCCCCC------
Q ss_conf 82089199994899997678998998766650341268997899993387399996089699993378888985------
Q 001480 313 VSESGEVFTWGCNREGQLGYGTSNSASNYTPRVVESLKGKDLVGVAAAKYHTIVLGADGERVIVARNLKKSGST------ 386 (1071)
Q Consensus 313 Lt~dG~VYsWG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~I~~IaaG~~hTivLt~dG~Vy~wG~n~~~~~~~------ 386 (1071)
|+++|+||+||.|.+||||+++... ...|..+..+.+.+|++|+||.+|+++|+.+|+||+||.|..++...
T Consensus 188 lt~~G~v~~wG~n~~GqlG~g~~~~--~~~p~~v~~~~~~~i~~va~G~~ht~~l~~~G~v~~wG~n~~GqlG~g~~~~~ 265 (406)
T 4d9s_A 188 VTEDGDLYGWGWGRYGNLGLGDRTD--RLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDH 265 (406)
T ss_dssp EETTSCEEEEECCTTSTTCSSSSCC--EEEEEECCCSTTCCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSSSCCCE
T ss_pred EECCCCEEEEECCCCCCCCCCCCCC--CCCCEEECCCCCCEEEEEEECCCCEEEECCCCCEEEEECCCCCCCCCCCCCCC
T ss_conf 9479988984179888778899877--68627840368962999997898189994899889963899887899987675
Q ss_pred --CCEECCCCCCCEEEEEECCCCCEEEECCCCEEEEECCCCCC----------CEEEEEECCCCEEEEEEECCCEEEEEE
Q ss_conf --42230136875999996798206882698399980899997----------202310037960599971795899995
Q 001480 387 --PLKFHRKIKLHVVSIAAGMVHSTALTEDGALFYWASSDPDL----------RCQQLYSMCGRNVVSISAGKYWTAAVT 454 (1071)
Q Consensus 387 --p~~~~~~~~~~Iv~IaaG~~hslaLT~dG~Vy~WGsn~~~~----------~p~~v~~l~g~~Vv~IaaG~~hs~aLT 454 (1071)
|..+..+....|++|+||..|+++|+++|+||+||.|..+. .|.++..+...+|++|+||.+|+++++
T Consensus 266 ~~p~~v~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~va~G~~hs~alt 345 (406)
T 4d9s_A 266 LIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVT 345 (406)
T ss_dssp EEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSSCEEEEEEECCGGGCCEEEEEECSSEEEEEE
T ss_pred CCCEEECCCCCCCEEEEEECCCEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEECCCEEEEEE
T ss_conf 05678232589988999846787999959990999338998888789987774677973267985899992899499994
Q ss_pred ECCCEEEECCCCCC
Q ss_conf 08949996699999
Q 001480 455 ATGDVYMWDGKKSK 468 (1071)
Q Consensus 455 ~dG~Vy~WG~N~~~ 468 (1071)
++|+||+||.|..+
T Consensus 346 ~~G~v~~wG~n~~G 359 (406)
T 4d9s_A 346 ERNNVFAWGRGTNG 359 (406)
T ss_dssp TTSCEEEEECCTTS
T ss_pred CCCCEEEECCCCCC
T ss_conf 89978996599888
No 3
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=1.00 E-value=1 Score=458.27 Aligned_cols=331 Identities=24% Similarity=0.324 Sum_probs=278.3
Q ss_pred CEEEECCCCCCCCCCCCCC-CCCCCCCEECCCCCCEEEEEECCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 1021126776423577876-555687122057894299980289659999239909998418999779999766778750
Q 001480 155 TEVFSWGSGANYQLGTGNA-HLQKLPCKVDSLHGFVIKLISAAKFHSVAVTSLGEVYTWGYGRGGRLGHPDFDIHSGQAA 233 (1071)
Q Consensus 155 g~VysWG~N~~GQLG~g~~-~~~~~P~~I~~l~~~~Iv~VaaG~~hs~aLt~dG~Vy~WG~N~~GQLG~g~~~~~~~~~~ 233 (1071)
|+||+||.|.+||||.+.. .....|.+++.+. .|++|+||..|+++|+++|+||+||.|.+||||.+... ...
T Consensus 43 G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~--~v~~va~G~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~----~~~ 116 (423)
T 3mvd_K 43 GNVLVCGNGDVGQLGLGEDILERKRLSPVAGIP--DAVDISAGGMHNLVLTKSGDIYSFGCNDEGALGRDTSE----DGS 116 (423)
T ss_dssp EEEEEEEECTTSTTCSCSSCCEEEEEEECCSCS--SEEEEEECSSEEEEEETTSCEEEEECCSSSTTCSCCCS----TTS
T ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCEECCCCC--CCEEEEECCCEEEEEECCCEEEEEECCCCCCCCCCCCC----CCC
T ss_conf 719998699877789999875676876756889--84499507894899957994998678998589998767----865
Q ss_pred EEEEEEEECCCCCCCEEEEEECCCEEEEEECCCCEEEEEC--CCCCCCCCCCCCCCCCCEEECCCCCCEEEEEECCCCEE
Q ss_conf 3320464058899997999856865899982991999938--99997688899887865032267665899997688406
Q 001480 234 VITPRRVTSGLGSRRVKTIAAAKHHTVLATEGGEVFTWGS--NREGQLGYTSVDTQPTPRRVSSLKLKIIAVAAANKHTA 311 (1071)
Q Consensus 234 v~~P~~V~~~l~~~~Iv~IaaG~~HslaLT~dG~VyswG~--N~~GQLG~gs~~~~~~P~~V~~l~~~Iv~VaaG~~HSi 311 (1071)
...|..|. ...+|++|+||.+|+++|+++|+||+||. |.+||||.+.......|..+.. ..+|++|+||.+|++
T Consensus 117 ~~~P~~v~---~~~~i~~va~G~~hs~al~~~G~v~~wG~~~n~~GqlG~~~~~~~~~p~~~~~-~~~i~~va~G~~hs~ 192 (423)
T 3mvd_K 117 ESKPDLID---LPGKALCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTIDGNKRTPIDLME-GTVCCSIASGADHLV 192 (423)
T ss_dssp SSSCEECC---CSSCEEEEEECSSEEEEEETTSCEEEEECEECSSSEEESBTTBCEEEEEESST-TCCEEEEEECSSEEE
T ss_pred CCCCEEEC---CCCCEEEEECCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCEEEEECC-CCCEEEEECCCCEEE
T ss_conf 65775974---79978999848682899917996999769889899867477888723469669-985899953897499
Q ss_pred EEECCCCEEEEECCCCCCCCCCCCCC---------CCCCCCEEEECCCCCCEEEEEECCCEEEEE-EECCCEEEEECCCC
Q ss_conf 88208919999489999767899899---------876665034126899789999338739999-60896999933788
Q 001480 312 VVSESGEVFTWGCNREGQLGYGTSNS---------ASNYTPRVVESLKGKDLVGVAAAKYHTIVL-GADGERVIVARNLK 381 (1071)
Q Consensus 312 aLt~dG~VYsWG~N~~GQLG~g~~~~---------~~~~~P~~V~~l~~~~I~~IaaG~~hTivL-t~dG~Vy~wG~n~~ 381 (1071)
+|+++|+||+||.|.+||||++.... .....|..+.......|.+|+||.+|++++ +.+|.||+||.|..
T Consensus 193 alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~v~~i~~g~~~~~~~~~~~g~v~~wG~n~~ 272 (423)
T 3mvd_K 193 ILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWATNYCTFMRESQTQVIWATGLNNF 272 (423)
T ss_dssp EEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEECCTTCCCEEEEEEETTEEEEEETTTCCEEEEEECTT
T ss_pred EEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEECCCC
T ss_conf 99269809996278678547776434454333453335687688406886279999799679999889994999749998
Q ss_pred CCCCC----------CCEECCCCCCCEEEEEECCCCCEEEECCCCEEEEECCCCC-----------CCEEEEEECCCCEE
Q ss_conf 88985----------4223013687599999679820688269839998089999-----------72023100379605
Q 001480 382 KSGST----------PLKFHRKIKLHVVSIAAGMVHSTALTEDGALFYWASSDPD-----------LRCQQLYSMCGRNV 440 (1071)
Q Consensus 382 ~~~~~----------p~~~~~~~~~~Iv~IaaG~~hslaLT~dG~Vy~WGsn~~~-----------~~p~~v~~l~g~~V 440 (1071)
++... |+.+ ...+|++|+||..|+++|+++|.||+||.|..+ ..|..+..+.+ +|
T Consensus 273 gqlg~~~~~~~~~~~p~~~---~~~~v~~ia~G~~ht~alt~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~-~v 348 (423)
T 3mvd_K 273 KQLAHETKGKEFALTPIKT---ELKDIRHIAGGQHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTE-KI 348 (423)
T ss_dssp CTTSSCCTTCSEEEEEEEE---CCCSEEEEEECSSEEEEEETTCCEEEEECCGGGTTCSSSCCSCEEEEEECTTCCS-CE
T ss_pred CCCCCCCCCCCEEEEEEEC---CCCCEEEEECCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCEEECCCCC-CE
T ss_conf 7679999887414644870---7887489972467699995899399997998888798986665468667214799-77
Q ss_pred EEEEECCCEEEEEEECCCEEEECCCCCCC-------CCCCEEEECC----CCCEEEEEECCCEEEEEEEC
Q ss_conf 99971795899995089499966999999-------9984377468----65489999438748999807
Q 001480 441 VSISAGKYWTAAVTATGDVYMWDGKKSKD-------NPPLVTRLHG----IKKATSVSVGETHLLIVGSL 499 (1071)
Q Consensus 441 v~IaaG~~hs~aLT~dG~Vy~WG~N~~~~-------~~~~p~~v~~----~~~V~~Va~G~~HtivL~s~ 499 (1071)
++|+||.+|+++++++|+||+||.|..++ ....|+++.. ..+|++|+||.+|+++|+..
T Consensus 349 ~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~~~v~~va~G~~ht~~l~~~ 418 (423)
T 3mvd_K 349 VSVGCGEVCSYAVTIDGKLYSWGSGVNNQLGVGDGDDELEPIVVVSKNTQGKHMLLASGGGQHAIFLVKA 418 (423)
T ss_dssp EEEEEETTEEEEEETTSCEEEEECCTTSCSSSSSSCCEEEEEECCSTTTTTCCEEEEEECSSEEEEEEEC
T ss_pred EEEECCCCEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCEEEEEEECCCCEEEEECC
T ss_conf 9997689869999589988997999798987999978605769737664797899997788828999716
No 4
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=457.72 Aligned_cols=340 Identities=25% Similarity=0.393 Sum_probs=275.0
Q ss_pred CEEEECCCCCCCCCCCCCC---CCCCCCCEECCC--CCCEEEEEECCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf 1021126776423577876---555687122057--89429998028965999923990999841899977999976677
Q 001480 155 TEVFSWGSGANYQLGTGNA---HLQKLPCKVDSL--HGFVIKLISAAKFHSVAVTSLGEVYTWGYGRGGRLGHPDFDIHS 229 (1071)
Q Consensus 155 g~VysWG~N~~GQLG~g~~---~~~~~P~~I~~l--~~~~Iv~VaaG~~hs~aLt~dG~Vy~WG~N~~GQLG~g~~~~~~ 229 (1071)
++||+||.|.+||||.|.. .....|++++.+ .+.+|++|+||..|+++|+++|+||+||.|.+||||.+......
T Consensus 29 g~v~~wG~n~~GqLG~G~~~~~~~~~~P~~~~~~~~~~~~i~~va~G~~Ht~alt~~G~v~~wG~n~~GqLG~~~~~~~~ 108 (473)
T 3of7_A 29 LDIFCWGTGSMCELGLGPLAKNKEVKRPRLNPFLPRDEAKIISFAVGGMHTLALDEESNVWSWGCNDVGALGRDTSNAKE 108 (473)
T ss_dssp CEEEEEEECTTSTTCSCSCGGGGEEEEEEECTTSCTTTTCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSCCC----
T ss_pred CCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCC
T ss_conf 65899818988736989776664455762155455577878999707876999916984999689988889998865333
Q ss_pred C-----------------CCCEEEEEEEEC-CC----CCCCEEEEEECCCEEEEEECCCCEEEEEC--CCCCCCCCCCC-
Q ss_conf 8-----------------750332046405-88----99997999856865899982991999938--99997688899-
Q 001480 230 G-----------------QAAVITPRRVTS-GL----GSRRVKTIAAAKHHTVLATEGGEVFTWGS--NREGQLGYTSV- 284 (1071)
Q Consensus 230 ~-----------------~~~v~~P~~V~~-~l----~~~~Iv~IaaG~~HslaLT~dG~VyswG~--N~~GQLG~gs~- 284 (1071)
. ......|.+|.. .+ ...+|++|+||.+|+++|+++|+||+||. |.+||||.+..
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~l~~~~~~~~i~~va~G~~hs~alt~~G~vy~wG~n~~~~GqLG~~~~~ 188 (473)
T 3of7_A 109 QLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAEGHKVVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGFYQDK 188 (473)
T ss_dssp -----------------CCHHHHSCEECCGGGCHHHHTTCCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESBTTT
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCEEEEECCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCC
T ss_conf 32345655567543344463346750134345775458981899982688799994898499946996898754888877
Q ss_pred -CCCCCCEEECCCC-CCEEEEEECCCCEEEEECCCCEEEEECCCCCCCCCCCCCC--CCCCCCEEEECCCCCCEEEEEEC
Q ss_conf -8878650322676-6589999768840688208919999489999767899899--87666503412689978999933
Q 001480 285 -DTQPTPRRVSSLK-LKIIAVAAANKHTAVVSESGEVFTWGCNREGQLGYGTSNS--ASNYTPRVVESLKGKDLVGVAAA 360 (1071)
Q Consensus 285 -~~~~~P~~V~~l~-~~Iv~VaaG~~HSiaLt~dG~VYsWG~N~~GQLG~g~~~~--~~~~~P~~V~~l~~~~I~~IaaG 360 (1071)
.....|.+|..+. .+|++|+||..|+++|+++|+||+||.|.+||||++.... .....|..+.. .+|++|+||
T Consensus 189 ~~~~~~P~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~p~~~~~---~~v~~Ia~G 265 (473)
T 3of7_A 189 IKIQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLKTLDPRPFGL---RHVKYIASG 265 (473)
T ss_dssp BSCEEEEEECCCCCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCCGGGTTTTCSCEECSC---CSEEEEEEC
T ss_pred CCCCCCCEECCCCCCCCEEEEEECCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEECCC---CCEEEEECC
T ss_conf 74144767755247888799996378389991799299976998888898844543335437521277---663899548
Q ss_pred CCEEEEEEECCCEEEEECCCCCCCCC------------CCEECCCCCCCEEEEEECCCCCEEEECCCCEEEEECCCCCC-
Q ss_conf 87399996089699993378888985------------42230136875999996798206882698399980899997-
Q 001480 361 KYHTIVLGADGERVIVARNLKKSGST------------PLKFHRKIKLHVVSIAAGMVHSTALTEDGALFYWASSDPDL- 427 (1071)
Q Consensus 361 ~~hTivLt~dG~Vy~wG~n~~~~~~~------------p~~~~~~~~~~Iv~IaaG~~hslaLT~dG~Vy~WGsn~~~~- 427 (1071)
.+|+++|+.+|+||+||.|..++... |..+..+...+|++|+||..|+++|+++|.||+||.|..+.
T Consensus 266 ~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~~~~~~P~~v~~~~~~~i~~ia~G~~hs~~lt~~G~v~~wG~n~~GqL 345 (473)
T 3of7_A 266 ENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALPDNVVIRSIAAGEHHSLILSQDGDLYSCGRLDMFEV 345 (473)
T ss_dssp SSEEEEEETTSCEEEEEECTTSTTCCCSCCCTTCEEEEEEECCCCTTCCEEEEEECSSEEEEEETTSCEEEEEECTTCTT
T ss_pred CCEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCEEEEEECCCEEEEEECCCEEEEEECCCCCCC
T ss_conf 97589991699889937898988588876568844541321255678638999867886999938982999878998741
Q ss_pred -----------------------CEEEEEECCCCEEEEEEECCCEEEEEEECCCEEEECCCCCCC--------CCCCEEE
Q ss_conf -----------------------202310037960599971795899995089499966999999--------9984377
Q 001480 428 -----------------------RCQQLYSMCGRNVVSISAGKYWTAAVTATGDVYMWDGKKSKD--------NPPLVTR 476 (1071)
Q Consensus 428 -----------------------~p~~v~~l~g~~Vv~IaaG~~hs~aLT~dG~Vy~WG~N~~~~--------~~~~p~~ 476 (1071)
.|..+..+ .+|++|+||.+|+++++++|+||+||.|..++ ....|++
T Consensus 346 G~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~--~~v~~Ia~G~~hs~al~~~G~vy~wG~n~~GqLG~g~~~~~~~~P~~ 423 (473)
T 3of7_A 346 GIPKDNLPEYTYKDVHGKARAVPLPTKLNNV--PKFKSVAAGSHHSVAVAQNGIAYSWGFGETYAVGLGPFEDDTEVPTR 423 (473)
T ss_dssp CCCGGGCCTTCEECTTSCEEEEEEEEECCSS--CCEEEEEECSSEEEEEETTSCEEEEECCTTCTTCCCSCCSCEEEEEE
T ss_pred CCCCCCCCCCCCCCCCCCEEEECCCCCCCCC--CCEEEEEECCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCEE
T ss_conf 8884446653100457860262167004787--75379985787699996898489962898988879997765637848
Q ss_pred ECCC----CCEEEEEECCCEEEEEEEC
Q ss_conf 4686----5489999438748999807
Q 001480 477 LHGI----KKATSVSVGETHLLIVGSL 499 (1071)
Q Consensus 477 v~~~----~~V~~Va~G~~HtivL~s~ 499 (1071)
+... .+|+.|+||..|++++...
T Consensus 424 v~~~~~~~~~v~~v~cG~~~s~~~~~~ 450 (473)
T 3of7_A 424 IKNTATQDHNIILVGCGGQFSVSGGVK 450 (473)
T ss_dssp CCCTTTTTEEEEEEEECSSEEEEEEEE
T ss_pred ECCCCCCCCEEEEEEECCCEEEEEEEC
T ss_conf 225666897289995188859999744
No 5
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=1.00 E-value=1 Score=455.20 Aligned_cols=333 Identities=23% Similarity=0.363 Sum_probs=273.8
Q ss_pred CEEEECCCCCCCCCCCCCCCC-CCCCCEECCCCCCEEEEEECCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 102112677642357787655-5687122057894299980289659999239909998418999779999766778750
Q 001480 155 TEVFSWGSGANYQLGTGNAHL-QKLPCKVDSLHGFVIKLISAAKFHSVAVTSLGEVYTWGYGRGGRLGHPDFDIHSGQAA 233 (1071)
Q Consensus 155 g~VysWG~N~~GQLG~g~~~~-~~~P~~I~~l~~~~Iv~VaaG~~hs~aLt~dG~Vy~WG~N~~GQLG~g~~~~~~~~~~ 233 (1071)
++||+||.|.+||||.+.... ...|++|+.+ .+|++|+||..|+++|+++|+||+||.|.+||||.+... ...
T Consensus 27 g~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~~--~~i~~va~G~~hs~~l~~~G~v~~wG~n~~GqLG~~~~~----~~~ 100 (413)
T 1a12_A 27 GLVLTLGQGDVGQLGLGENVMERKKPALVSIP--EDVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSV----EGS 100 (413)
T ss_dssp BEEEEEEECTTSTTCSCTTCCEEEEEEEECCS--SCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCCCS----TTG
T ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCEECCCC--CCEEEEEECCCEEEEECCCCCEEEEECCCCCCCCCCCCC----CCC
T ss_conf 86899778989837989986430465671688--986999867775899947998999889998877988888----753
Q ss_pred EEEEEEEECCCCCCCEEEEEECCCEEEEEECCCCEEEEEC--CCCCCCCCCCCCC-CCCCEEECCCCCCEEEEEECCCCE
Q ss_conf 3320464058899997999856865899982991999938--9999768889988-786503226766589999768840
Q 001480 234 VITPRRVTSGLGSRRVKTIAAAKHHTVLATEGGEVFTWGS--NREGQLGYTSVDT-QPTPRRVSSLKLKIIAVAAANKHT 310 (1071)
Q Consensus 234 v~~P~~V~~~l~~~~Iv~IaaG~~HslaLT~dG~VyswG~--N~~GQLG~gs~~~-~~~P~~V~~l~~~Iv~VaaG~~HS 310 (1071)
...|..|. + ..+|++|+||.+|+++|+++|+||+||. |.+||||.+.... ...|.+|. ...+|++|+||.+|+
T Consensus 101 ~~~P~~v~--l-~~~i~~va~G~~hs~alt~~G~v~~wG~~~n~~GqlG~~~~~~~~~~P~~v~-~~~~i~~ia~G~~hs 176 (413)
T 1a12_A 101 EMVPGKVE--L-QEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQ-LDVPVVKVASGNDHL 176 (413)
T ss_dssp GGSCEECC--C-CSCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESSBBTBCEEEEEEEC-CSSCEEEEEECSSEE
T ss_pred CCCCEEEC--C-CCCEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEC-CCCCEEEEEECCCEE
T ss_conf 45874753--8-8758999668873799848994899437768998637678664466787961-899779998467618
Q ss_pred EEEECCCCEEEEECCCCCCCCCCCCCCC---------CCCCCEEEECC-----CCCCEEEEEECCCEEEEEEECCCEEEE
Q ss_conf 6882089199994899997678998998---------76665034126-----899789999338739999608969999
Q 001480 311 AVVSESGEVFTWGCNREGQLGYGTSNSA---------SNYTPRVVESL-----KGKDLVGVAAAKYHTIVLGADGERVIV 376 (1071)
Q Consensus 311 iaLt~dG~VYsWG~N~~GQLG~g~~~~~---------~~~~P~~V~~l-----~~~~I~~IaaG~~hTivLt~dG~Vy~w 376 (1071)
++|+++|+||+||.|.+||||++..... ....|+.|... ...+|++|+||.+|+++|+.+|.||+|
T Consensus 177 ~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~P~~v~~~~~g~~~~~~i~~ia~G~~hs~alt~~G~v~~w 256 (413)
T 1a12_A 177 VMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGF 256 (413)
T ss_dssp EEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEETTEEEEEETTCCEEEE
T ss_pred EEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEEEEEECCCEEEEEECCCCEEEE
T ss_conf 99858998898338988866887533345555455322446745763145666785489997078879999689979998
Q ss_pred ECCCCCCCCC--------CCEECCCCC--CCEEEEEECCCCCEEEECCCCEEEEECCCCC-----------CCEEEEEEC
Q ss_conf 3378888985--------422301368--7599999679820688269839998089999-----------720231003
Q 001480 377 ARNLKKSGST--------PLKFHRKIK--LHVVSIAAGMVHSTALTEDGALFYWASSDPD-----------LRCQQLYSM 435 (1071)
Q Consensus 377 G~n~~~~~~~--------p~~~~~~~~--~~Iv~IaaG~~hslaLT~dG~Vy~WGsn~~~-----------~~p~~v~~l 435 (1071)
|.|..++... |..+..+.. .+|++|+||..|+++|+++|.||+||.|..+ ..|..+..+
T Consensus 257 G~n~~gqLG~~~~~~~~~P~~v~~l~~~~~~v~~ia~G~~hs~al~~~G~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~l 336 (413)
T 1a12_A 257 GLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRL 336 (413)
T ss_dssp ECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSCTTCCCEEEEEECCSS
T ss_pred ECCCCCCCCCCCCCCCCCCEECHHCCCCCCEEEEEECCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCEEECCC
T ss_conf 49987677799987635667701015887329999505245899907998998648988866899988636677792266
Q ss_pred CCCEEEEEEECCCEEEEEEECCCEEEECCCCCCC-------CCCCEEEECC----CCCEEEEEECCCEEEEEEEC
Q ss_conf 7960599971795899995089499966999999-------9984377468----65489999438748999807
Q 001480 436 CGRNVVSISAGKYWTAAVTATGDVYMWDGKKSKD-------NPPLVTRLHG----IKKATSVSVGETHLLIVGSL 499 (1071)
Q Consensus 436 ~g~~Vv~IaaG~~hs~aLT~dG~Vy~WG~N~~~~-------~~~~p~~v~~----~~~V~~Va~G~~HtivL~s~ 499 (1071)
.+|++|+||.+|+++++++|+||+||.|..++ ....|.++.. ..+|++|+||.+|+++|+..
T Consensus 337 --~~v~~v~~G~~hs~alt~~G~v~~wG~n~~gqLG~g~~~~~~~P~~v~~~~~~~~~v~~v~~G~~ht~~l~~~ 409 (413)
T 1a12_A 337 --PAVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLLVKD 409 (413)
T ss_dssp --SSEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCSCEEEEEECCSTTTTTEEEEEEEECSSEEEEEEEE
T ss_pred --CCEEEEEECCCEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCEECCCCCCCCCEEEEEEECCCCEEEEEEC
T ss_conf --7625999775647999489978992289898787999887553748545565898699995578828999816
No 6
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=1.00 E-value=1 Score=451.62 Aligned_cols=325 Identities=26% Similarity=0.386 Sum_probs=281.4
Q ss_pred CCEEEEEECCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEECCCEEEEEECCC
Q ss_conf 94299980289659999239909998418999779999766778750332046405889999799985686589998299
Q 001480 187 GFVIKLISAAKFHSVAVTSLGEVYTWGYGRGGRLGHPDFDIHSGQAAVITPRRVTSGLGSRRVKTIAAAKHHTVLATEGG 266 (1071)
Q Consensus 187 ~~~Iv~VaaG~~hs~aLt~dG~Vy~WG~N~~GQLG~g~~~~~~~~~~v~~P~~V~~~l~~~~Iv~IaaG~~HslaLT~dG 266 (1071)
..+|++|+||..|+++|+++|+||+||.|.+||||.+.. .....|+++. .+...+|++|+||.+|+++|+++|
T Consensus 15 ~~~v~~ia~G~~hs~al~~~g~v~~wG~n~~GqLG~g~~------~~~~~P~~v~-~l~~~~i~~va~G~~ht~al~~~g 87 (406)
T 4d9s_A 15 PRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDA------EDRPSPTQLS-ALDGHQIVSVTCGADHTVAYSQSG 87 (406)
T ss_dssp CCCEEEEEECSSEEEEEETTTEEEEEECCTTSTTCSSSC------CCEEEEEECG-GGTTSCEEEEEECSSEEEEEETTT
T ss_pred CCCEEEEECCCCEEEEEEECCEEEEEECCCCCCCCCCCC------CCCCCCEEEC-CCCCCCEEEEEECCCEEEEEECCC
T ss_conf 664699961879099998299899986999988897986------5573887822-468997899982845089998889
Q ss_pred -CEEEEECCCCCCCCCCCCCCCCCCEEECCCC-CCEEEEEECCCCEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCE
Q ss_conf -1999938999976888998878650322676-65899997688406882089199994899997678998998766650
Q 001480 267 -EVFTWGSNREGQLGYTSVDTQPTPRRVSSLK-LKIIAVAAANKHTAVVSESGEVFTWGCNREGQLGYGTSNSASNYTPR 344 (1071)
Q Consensus 267 -~VyswG~N~~GQLG~gs~~~~~~P~~V~~l~-~~Iv~VaaG~~HSiaLt~dG~VYsWG~N~~GQLG~g~~~~~~~~~P~ 344 (1071)
+||+||.|.+||||.+.......|..+..+. .+|++|+||..|+++|+++|+||+||.|.+||||+++... ...|.
T Consensus 88 g~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~--~~~p~ 165 (406)
T 4d9s_A 88 MEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTED--SLVPQ 165 (406)
T ss_dssp TEEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCC--EEEEE
T ss_pred CEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEECHHHEEEECCCCCEEEECCCCCCCCCCCCCCC--CCCCE
T ss_conf 9899975998868998998764610684146899889999770465897389859990799875477989877--55235
Q ss_pred EEECCCCCCEEEEEECCCEEEEEEECCCEEEEECCCCCCCC--------CCCEECCCCCCCEEEEEECCCCCEEEECCCC
Q ss_conf 34126899789999338739999608969999337888898--------5422301368759999967982068826983
Q 001480 345 VVESLKGKDLVGVAAAKYHTIVLGADGERVIVARNLKKSGS--------TPLKFHRKIKLHVVSIAAGMVHSTALTEDGA 416 (1071)
Q Consensus 345 ~V~~l~~~~I~~IaaG~~hTivLt~dG~Vy~wG~n~~~~~~--------~p~~~~~~~~~~Iv~IaaG~~hslaLT~dG~ 416 (1071)
.+..+.+.+|++|+||.+|+++|+.+|+||+||.|..++.. .|..+..+...+|++|+||..|+++|+++|.
T Consensus 166 ~v~~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G~~ht~~l~~~G~ 245 (406)
T 4d9s_A 166 KIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGA 245 (406)
T ss_dssp ECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEECSSEEEEEETTCC
T ss_pred EECCCCCCCEEEEECCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEEECCCCEEEECCCCC
T ss_conf 74356897389996478739999479988984179888778899877686278403689629999978981899948998
Q ss_pred EEEEECCCCC----------CCEEEEEECCCCEEEEEEECCCEEEEEEECCCEEEECCCCCCC-------CCCCEEEE--
Q ss_conf 9998089999----------7202310037960599971795899995089499966999999-------99843774--
Q 001480 417 LFYWASSDPD----------LRCQQLYSMCGRNVVSISAGKYWTAAVTATGDVYMWDGKKSKD-------NPPLVTRL-- 477 (1071)
Q Consensus 417 Vy~WGsn~~~----------~~p~~v~~l~g~~Vv~IaaG~~hs~aLT~dG~Vy~WG~N~~~~-------~~~~p~~v-- 477 (1071)
||+||.|..+ ..|..+..+.+..|++|+||.+|+++++++|+||+||.|..++ ....|.++
T Consensus 246 v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~ 325 (406)
T 4d9s_A 246 LYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRF 325 (406)
T ss_dssp EEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSSCEEEEEEECC
T ss_pred EEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEECCCEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEC
T ss_conf 89963899887899987675056782325899889998467879999599909993389988887899877746779732
Q ss_pred CCCCCEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 68654899994387489998079984599888997744469996
Q 001480 478 HGIKKATSVSVGETHLLIVGSLYHPIYPPNVAKNPQKLKLNGRN 521 (1071)
Q Consensus 478 ~~~~~V~~Va~G~~HtivL~s~~~~~~~~G~~~~gq~~~~~~~~ 521 (1071)
+...+|++|+||.+|+++|+.. +.+|+||.+.+||++.-....
T Consensus 326 ~~~~~v~~va~G~~hs~alt~~-G~v~~wG~n~~GqLG~g~~~~ 368 (406)
T 4d9s_A 326 PDDQKVVQVSCGWRHTLAVTER-NNVFAWGRGTNGQLGIGESVD 368 (406)
T ss_dssp GGGCCEEEEEECSSEEEEEETT-SCEEEEECCTTSTTCSSSCCC
T ss_pred CCCCCEEEEEECCCEEEEEECC-CCEEEECCCCCCCCCCCCCCC
T ss_conf 6798589999289949999489-978996599888668999877
No 7
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=432.08 Aligned_cols=326 Identities=24% Similarity=0.314 Sum_probs=269.8
Q ss_pred CEEEEEECCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEECCC--CCCCEEEEEECCCEEEEEECC
Q ss_conf 429998028965999923990999841899977999976677875033204640588--999979998568658999829
Q 001480 188 FVIKLISAAKFHSVAVTSLGEVYTWGYGRGGRLGHPDFDIHSGQAAVITPRRVTSGL--GSRRVKTIAAAKHHTVLATEG 265 (1071)
Q Consensus 188 ~~Iv~VaaG~~hs~aLt~dG~Vy~WG~N~~GQLG~g~~~~~~~~~~v~~P~~V~~~l--~~~~Iv~IaaG~~HslaLT~d 265 (1071)
..|....++..|+++++++|+||+||.|.+||||++... .......|+.+. .+ ...+|++|+||..|+++|+++
T Consensus 10 ~~~~~~~~~~~h~~~~~~~g~v~~wG~n~~GqLG~G~~~---~~~~~~~P~~~~-~~~~~~~~i~~va~G~~Ht~alt~~ 85 (473)
T 3of7_A 10 SHIINAQEDYKHMYLSVQPLDIFCWGTGSMCELGLGPLA---KNKEVKRPRLNP-FLPRDEAKIISFAVGGMHTLALDEE 85 (473)
T ss_dssp TTCCCCGGGGHHHHCCSSCCEEEEEEECTTSTTCSCSCG---GGGEEEEEEECT-TSCTTTTCEEEEEECSSEEEEEETT
T ss_pred HHHHHHCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCC---CCCCCCCCCCCC-CCCCCCCCEEEEEECCCEEEEEECC
T ss_conf 666552134201026788765899818988736989776---664455762155-4555778789997078769999169
Q ss_pred CCEEEEECCCCCCCCCCCCCC-----------------------CCCCEEECC--C-----CCCEEEEEECCCCEEEEEC
Q ss_conf 919999389999768889988-----------------------786503226--7-----6658999976884068820
Q 001480 266 GEVFTWGSNREGQLGYTSVDT-----------------------QPTPRRVSS--L-----KLKIIAVAAANKHTAVVSE 315 (1071)
Q Consensus 266 G~VyswG~N~~GQLG~gs~~~-----------------------~~~P~~V~~--l-----~~~Iv~VaaG~~HSiaLt~ 315 (1071)
|+||+||.|.+||||.+.... ...|.+|.. + ..+|++|+||.+|+++|++
T Consensus 86 G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~l~~~~~~~~i~~va~G~~hs~alt~ 165 (473)
T 3of7_A 86 SNVWSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAEGHKVVQLAATDNMSCALFS 165 (473)
T ss_dssp CCEEEEECCTTSTTCSCCC---------------------CCHHHHSCEECCGGGCHHHHTTCCEEEEEECSSEEEEEET
T ss_pred CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCEEEEECCCCEEEEEEC
T ss_conf 84999689988889998865333323456555675433444633467501343457754589818999826887999948
Q ss_pred CCCEEEEEC--CCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEECCCEEEEEEECCCEEEEECCCCCCCCCCC-----
Q ss_conf 891999948--9999767899899876665034126899789999338739999608969999337888898542-----
Q 001480 316 SGEVFTWGC--NREGQLGYGTSNSASNYTPRVVESLKGKDLVGVAAAKYHTIVLGADGERVIVARNLKKSGSTPL----- 388 (1071)
Q Consensus 316 dG~VYsWG~--N~~GQLG~g~~~~~~~~~P~~V~~l~~~~I~~IaaG~~hTivLt~dG~Vy~wG~n~~~~~~~p~----- 388 (1071)
+|+||+||. |.+||||.+.........|..|..+.+.+|++|+||.+|+++|+.+|+||+||.|..++.....
T Consensus 166 ~G~vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~ 245 (473)
T 3of7_A 166 NGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERFR 245 (473)
T ss_dssp TSCEEEEECEEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCCGGGT
T ss_pred CCEEEEEECCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCEEEEEECCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCC
T ss_conf 98499946996898754888877741447677552478887999963783899917992999769988888988445433
Q ss_pred ---EECCC-CCCCEEEEEECCCCCEEEECCCCEEEEECCCCC--------------CCEEEEEECCCCEEEEEEECCCEE
Q ss_conf ---23013-687599999679820688269839998089999--------------720231003796059997179589
Q 001480 389 ---KFHRK-IKLHVVSIAAGMVHSTALTEDGALFYWASSDPD--------------LRCQQLYSMCGRNVVSISAGKYWT 450 (1071)
Q Consensus 389 ---~~~~~-~~~~Iv~IaaG~~hslaLT~dG~Vy~WGsn~~~--------------~~p~~v~~l~g~~Vv~IaaG~~hs 450 (1071)
..+.. ...+|++|+||..|+++|+++|.||+||.|..+ ..|..+..+.+.+|++|+||.+|+
T Consensus 246 ~~~~~p~~~~~~~v~~Ia~G~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~~~~~~P~~v~~~~~~~i~~ia~G~~hs 325 (473)
T 3of7_A 246 LKTLDPRPFGLRHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALPDNVVIRSIAAGEHHS 325 (473)
T ss_dssp TTTCSCEECSCCSEEEEEECSSEEEEEETTSCEEEEEECTTSTTCCCSCCCTTCEEEEEEECCCCTTCCEEEEEECSSEE
T ss_pred CCCCCCEECCCCCEEEEECCCCEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCEEEEEECCCEE
T ss_conf 35437521277663899548975899916998899378989885888765688445413212556786389998678869
Q ss_pred EEEEECCCEEEECCCCCCCC---------------------CCCEEEECCCCCEEEEEECCCEEEEEEECCCCCCCCCCC
Q ss_conf 99950894999669999999---------------------984377468654899994387489998079984599888
Q 001480 451 AAVTATGDVYMWDGKKSKDN---------------------PPLVTRLHGIKKATSVSVGETHLLIVGSLYHPIYPPNVA 509 (1071)
Q Consensus 451 ~aLT~dG~Vy~WG~N~~~~~---------------------~~~p~~v~~~~~V~~Va~G~~HtivL~s~~~~~~~~G~~ 509 (1071)
++|+++|+||+||.|..++. .+.|..+.++.+|++|+||.+|+++|+.. +.+|+||.+
T Consensus 326 ~~lt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~~v~~Ia~G~~hs~al~~~-G~vy~wG~n 404 (473)
T 3of7_A 326 LILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNVPKFKSVAAGSHHSVAVAQN-GIAYSWGFG 404 (473)
T ss_dssp EEEETTSCEEEEEECTTCTTCCCGGGCCTTCEECTTSCEEEEEEEEECCSSCCEEEEEECSSEEEEEETT-SCEEEEECC
T ss_pred EEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCEEEEEECCCEEEEEECC-CCEEEEECC
T ss_conf 9993898299987899874188844466531004578602621670047877537998578769999689-848996289
Q ss_pred CCCCCCCCC
Q ss_conf 997744469
Q 001480 510 KNPQKLKLN 518 (1071)
Q Consensus 510 ~~gq~~~~~ 518 (1071)
.+||++.-.
T Consensus 405 ~~GqLG~g~ 413 (473)
T 3of7_A 405 ETYAVGLGP 413 (473)
T ss_dssp TTCTTCCCS
T ss_pred CCCCCCCCC
T ss_conf 898887999
No 8
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=1.00 E-value=1 Score=421.84 Aligned_cols=293 Identities=26% Similarity=0.481 Sum_probs=161.4
Q ss_pred CEEEECCCCCCCCCCCCCCCCCCCCCEECCCCCC--EEEEEECCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 1021126776423577876555687122057894--29998028965999923990999841899977999976677875
Q 001480 155 TEVFSWGSGANYQLGTGNAHLQKLPCKVDSLHGF--VIKLISAAKFHSVAVTSLGEVYTWGYGRGGRLGHPDFDIHSGQA 232 (1071)
Q Consensus 155 g~VysWG~N~~GQLG~g~~~~~~~P~~I~~l~~~--~Iv~VaaG~~hs~aLt~dG~Vy~WG~N~~GQLG~g~~~~~~~~~ 232 (1071)
|+||+||.|.+||||.+.......|.+++.+.+. ++++|+||..|+++|+++|+||+||.|.+||||.+.. .
T Consensus 72 G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~------~ 145 (389)
T 3kci_A 72 GKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNR------S 145 (389)
T ss_dssp SCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSC------C
T ss_pred CCEEEEECCCCCCCCCCCCCCCCCCEECCCCCCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCCCCCCCCC------C
T ss_conf 8199988999988898996773377771101577325999876877499994899799972998986789987------5
Q ss_pred CEEEEEEEECCCCCCCEEEEEECCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCEEECCCC-CCEEEEEECC--CC
Q ss_conf 03320464058899997999856865899982991999938999976888998878650322676-6589999768--84
Q 001480 233 AVITPRRVTSGLGSRRVKTIAAAKHHTVLATEGGEVFTWGSNREGQLGYTSVDTQPTPRRVSSLK-LKIIAVAAAN--KH 309 (1071)
Q Consensus 233 ~v~~P~~V~~~l~~~~Iv~IaaG~~HslaLT~dG~VyswG~N~~GQLG~gs~~~~~~P~~V~~l~-~~Iv~VaaG~--~H 309 (1071)
....|+.+. .+...+|++|+||.+|+++|+++|+||+||.|.+||||.+.......|+.+..+. .+|++|+||. .|
T Consensus 146 ~~~~p~~v~-~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~ 224 (389)
T 3kci_A 146 PCDRPRVIE-SLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQ 224 (389)
T ss_dssp CEEEEEECG-GGTTSCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCE
T ss_pred CCCCCEEEC-CCCCCEEEEEEECCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEEECCCCCE
T ss_conf 675876843-6689739999717585899948980899489988876899986604556850458983999997689858
Q ss_pred EEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEECCCEEEEEEECCCEEEEECCCCCCCC----
Q ss_conf 0688208919999489999767899899876665034126899789999338739999608969999337888898----
Q 001480 310 TAVVSESGEVFTWGCNREGQLGYGTSNSASNYTPRVVESLKGKDLVGVAAAKYHTIVLGADGERVIVARNLKKSGS---- 385 (1071)
Q Consensus 310 SiaLt~dG~VYsWG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~I~~IaaG~~hTivLt~dG~Vy~wG~n~~~~~~---- 385 (1071)
+++|+++|+||+||.|.+||||.+.... ...|..|..+.+.+|++|+||.+|+++|+.+|+||+||.|..++..
T Consensus 225 t~~l~~~G~v~~wG~n~~GqLG~g~~~~--~~~p~~v~~~~~~~v~~v~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~ 302 (389)
T 3kci_A 225 TLCLTDDDTVWSWGDGDYGKLGRGGSDG--CKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSD 302 (389)
T ss_dssp EEEEETTTEEEEEECCGGGTTSSSSCCC--EEEEEECGGGTTSCEEEEEEETTEEEEEETTSCEEEEECCGGGTTCSSSC
T ss_pred EEEECCCCEEEEEECCCCCCCCCCCCCC--CCCCEEECCCCCCCEEEEECCCCEEEEEECCCEEEEEECCCCCCCCCCCC
T ss_conf 9999059979997399888779899888--54467954668996799947998799995899399985899988889998
Q ss_pred ----CCCEECCCCCCCEEEEEECCCCCEEEECCCCEEEEECCCCC----------CCEEEEEECCCCEEEEEEECCCEEE
Q ss_conf ----54223013687599999679820688269839998089999----------7202310037960599971795899
Q 001480 386 ----TPLKFHRKIKLHVVSIAAGMVHSTALTEDGALFYWASSDPD----------LRCQQLYSMCGRNVVSISAGKYWTA 451 (1071)
Q Consensus 386 ----~p~~~~~~~~~~Iv~IaaG~~hslaLT~dG~Vy~WGsn~~~----------~~p~~v~~l~g~~Vv~IaaG~~hs~ 451 (1071)
.|..+..+...+|++|+||..|+++++++|+||+||.|..+ ..|..+..+.+.+|++|+||.+|++
T Consensus 303 ~~~~~P~~v~~l~~~~v~~ia~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~v~~va~G~~ht~ 382 (389)
T 3kci_A 303 DHVRRPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQRPRLVAALQGKKVNRVACGSAHTL 382 (389)
T ss_dssp CCEEEEEECGGGTTCCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCCCEEEEETTEEE
T ss_pred CCCCCCEEECCCCCCCEEEEEECCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEECCCCEE
T ss_conf 66208758514799988999944570999989998998038998868898987746767911358998799996678289
Q ss_pred EEEEC
Q ss_conf 99508
Q 001480 452 AVTAT 456 (1071)
Q Consensus 452 aLT~d 456 (1071)
+++++
T Consensus 383 al~~~ 387 (389)
T 3kci_A 383 AWSTS 387 (389)
T ss_dssp EECC-
T ss_pred EEECC
T ss_conf 99469
No 9
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=1.00 E-value=1 Score=418.65 Aligned_cols=315 Identities=23% Similarity=0.303 Sum_probs=253.3
Q ss_pred EEECCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEECCCEEEEEECCCCEEEE
Q ss_conf 98028965999923990999841899977999976677875033204640588999979998568658999829919999
Q 001480 192 LISAAKFHSVAVTSLGEVYTWGYGRGGRLGHPDFDIHSGQAAVITPRRVTSGLGSRRVKTIAAAKHHTVLATEGGEVFTW 271 (1071)
Q Consensus 192 ~VaaG~~hs~aLt~dG~Vy~WG~N~~GQLG~g~~~~~~~~~~v~~P~~V~~~l~~~~Iv~IaaG~~HslaLT~dG~Vysw 271 (1071)
+.+.+..|+++|+++|+||+||.|.+||||++... .....|+.+. . ..+|++|+||..|+++|+++|+||+|
T Consensus 12 ~~~~~~~h~~~l~~~g~v~~wG~n~~GqLG~g~~~-----~~~~~P~~v~-~--~~~i~~va~G~~hs~~l~~~G~v~~w 83 (413)
T 1a12_A 12 SKKVKVSHRSHSTEPGLVLTLGQGDVGQLGLGENV-----MERKKPALVS-I--PEDVVQAEAGGMHTVCLSKSGQVYSF 83 (413)
T ss_dssp -CCCCCCCTTCCCCCBEEEEEEECTTSTTCSCTTC-----CEEEEEEEEC-C--SSCEEEEEECSSEEEEEETTSCEEEE
T ss_pred HHHHCCCCCEEECCCCCEEEEECCCCCCCCCCCCC-----CCCCCCEECC-C--CCCEEEEEECCCEEEEECCCCCEEEE
T ss_conf 34420442040068986899778989837989986-----4304656716-8--89869998677758999479989998
Q ss_pred ECCCCCCCCCCCCC--CCCCCEEECCCCCCEEEEEECCCCEEEEECCCCEEEEEC--CCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 38999976888998--878650322676658999976884068820891999948--99997678998998766650341
Q 001480 272 GSNREGQLGYTSVD--TQPTPRRVSSLKLKIIAVAAANKHTAVVSESGEVFTWGC--NREGQLGYGTSNSASNYTPRVVE 347 (1071)
Q Consensus 272 G~N~~GQLG~gs~~--~~~~P~~V~~l~~~Iv~VaaG~~HSiaLt~dG~VYsWG~--N~~GQLG~g~~~~~~~~~P~~V~ 347 (1071)
|.|.+||||.+... ....|++|. +..+|++|+||.+|+++|+++|+||+||. |.+||||.+.... ....|..|
T Consensus 84 G~n~~GqLG~~~~~~~~~~~P~~v~-l~~~i~~va~G~~hs~alt~~G~v~~wG~~~n~~GqlG~~~~~~-~~~~P~~v- 160 (413)
T 1a12_A 84 GCNDEGALGRDTSVEGSEMVPGKVE-LQEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMK-KSMVPVQV- 160 (413)
T ss_dssp ECCTTSTTCSCCCSTTGGGSCEECC-CCSCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESSBBTB-CEEEEEEE-
T ss_pred ECCCCCCCCCCCCCCCCCCCCEEEC-CCCCEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCC-CCCCCEEE-
T ss_conf 8999887798888875345874753-88758999668873799848994899437768998637678664-46678796-
Q ss_pred CCCCCCEEEEEECCCEEEEEEECCCEEEEECCCCCCCCC-------------------CCEECCC-----CCCCEEEEEE
Q ss_conf 268997899993387399996089699993378888985-------------------4223013-----6875999996
Q 001480 348 SLKGKDLVGVAAAKYHTIVLGADGERVIVARNLKKSGST-------------------PLKFHRK-----IKLHVVSIAA 403 (1071)
Q Consensus 348 ~l~~~~I~~IaaG~~hTivLt~dG~Vy~wG~n~~~~~~~-------------------p~~~~~~-----~~~~Iv~Iaa 403 (1071)
+...+|++|+||.+|+++|+.+|+||+||.|..++... |..+... ...+|++|+|
T Consensus 161 -~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~P~~v~~~~~g~~~~~~i~~ia~ 239 (413)
T 1a12_A 161 -QLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFC 239 (413)
T ss_dssp -CCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEE
T ss_pred -CCCCCEEEEEECCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEEEEEE
T ss_conf -1899779998467618998589988983389888668875333455554553224467457631456667854899970
Q ss_pred CCCCCEEEECCCCEEEEECCCCC----------CCEEEEEECCC--CEEEEEEECCCEEEEEEECCCEEEECCCCCCC--
Q ss_conf 79820688269839998089999----------72023100379--60599971795899995089499966999999--
Q 001480 404 GMVHSTALTEDGALFYWASSDPD----------LRCQQLYSMCG--RNVVSISAGKYWTAAVTATGDVYMWDGKKSKD-- 469 (1071)
Q Consensus 404 G~~hslaLT~dG~Vy~WGsn~~~----------~~p~~v~~l~g--~~Vv~IaaG~~hs~aLT~dG~Vy~WG~N~~~~-- 469 (1071)
|..|+++|+++|.||+||.|..+ ..|..+..+.+ .+|++|+||.+|+++++++|+||+||.|..++
T Consensus 240 G~~hs~alt~~G~v~~wG~n~~gqLG~~~~~~~~~P~~v~~l~~~~~~v~~ia~G~~hs~al~~~G~v~~wG~n~~GqLG 319 (413)
T 1a12_A 240 GAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLG 319 (413)
T ss_dssp ETTEEEEEETTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEECSSEEEEEETTSCEEEEECCGGGTTC
T ss_pred CCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCEECHHCCCCCCEEEEEECCCCEEEEEECCCCEEEEECCCCCCCC
T ss_conf 78879999689979998499876777999876356677010158873299995052458999079989986489888668
Q ss_pred ------CCCCEEEECCCCCEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf ------99843774686548999943874899980799845998889977444699
Q 001480 470 ------NPPLVTRLHGIKKATSVSVGETHLLIVGSLYHPIYPPNVAKNPQKLKLNG 519 (1071)
Q Consensus 470 ------~~~~p~~v~~~~~V~~Va~G~~HtivL~s~~~~~~~~G~~~~gq~~~~~~ 519 (1071)
....|..++.+.+|++|+||.+|+++|+.. +.+|+||.+.++|++.-..
T Consensus 320 ~g~~~~~~~~P~~v~~l~~v~~v~~G~~hs~alt~~-G~v~~wG~n~~gqLG~g~~ 374 (413)
T 1a12_A 320 LGEGAEEKSIPTLISRLPAVSSVACGASVGYAVTKD-GRVFAWGMGTNYQLGTGQD 374 (413)
T ss_dssp SCTTCCCEEEEEECCSSSSEEEEEECSSEEEEEETT-SCEEEEECCTTSTTCSSSC
T ss_pred CCCCCCCCCCCEEECCCCCEEEEEECCCEEEEEECC-CCEEEECCCCCCCCCCCCC
T ss_conf 999886366777922667625999775647999489-9789922898987879998
No 10
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=1.00 E-value=1 Score=416.30 Aligned_cols=319 Identities=19% Similarity=0.231 Sum_probs=262.8
Q ss_pred CCEEEEEECCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEECCCEEEEEECCC
Q ss_conf 94299980289659999239909998418999779999766778750332046405889999799985686589998299
Q 001480 187 GFVIKLISAAKFHSVAVTSLGEVYTWGYGRGGRLGHPDFDIHSGQAAVITPRRVTSGLGSRRVKTIAAAKHHTVLATEGG 266 (1071)
Q Consensus 187 ~~~Iv~VaaG~~hs~aLt~dG~Vy~WG~N~~GQLG~g~~~~~~~~~~v~~P~~V~~~l~~~~Iv~IaaG~~HslaLT~dG 266 (1071)
..++++|+||..|+++++++|+||+||.|.+||||++.. ......|.++. .+ ..|++|+||..|+++|+++|
T Consensus 23 ~~~~~~ia~g~~~~~~l~~~G~v~~wG~n~~GqLG~g~~-----~~~~~~p~~v~-~l--~~v~~va~G~~h~~~l~~~G 94 (423)
T 3mvd_K 23 KAKRARIAFHLELPKRRTVLGNVLVCGNGDVGQLGLGED-----ILERKRLSPVA-GI--PDAVDISAGGMHNLVLTKSG 94 (423)
T ss_dssp ------CCCCCCCCCCCCCCEEEEEEEECTTSTTCSCSS-----CCEEEEEEECC-SC--SSEEEEEECSSEEEEEETTS
T ss_pred CCEEEEEECCCCCCEEECCCCCEEEEECCCCCCCCCCCC-----CCCCCCCEECC-CC--CCCEEEEECCCEEEEEECCC
T ss_conf 120368863776533166997199986998777899998-----75676876756-88--98449950789489995799
Q ss_pred CEEEEECCCCCCCCCCCCCC--CCCCEEECCCCCCEEEEEECCCCEEEEECCCCEEEEEC--CCCCCCCCCCCCCCCCCC
Q ss_conf 19999389999768889988--78650322676658999976884068820891999948--999976789989987666
Q 001480 267 EVFTWGSNREGQLGYTSVDT--QPTPRRVSSLKLKIIAVAAANKHTAVVSESGEVFTWGC--NREGQLGYGTSNSASNYT 342 (1071)
Q Consensus 267 ~VyswG~N~~GQLG~gs~~~--~~~P~~V~~l~~~Iv~VaaG~~HSiaLt~dG~VYsWG~--N~~GQLG~g~~~~~~~~~ 342 (1071)
+||+||.|.+||||.+.... ...|.+|.. ..+|++|+||.+|+++|+++|+||+||. |.+||||.+.... ...
T Consensus 95 ~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~~-~~~i~~va~G~~hs~al~~~G~v~~wG~~~n~~GqlG~~~~~~--~~~ 171 (423)
T 3mvd_K 95 DIYSFGCNDEGALGRDTSEDGSESKPDLIDL-PGKALCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTIDGN--KRT 171 (423)
T ss_dssp CEEEEECCSSSTTCSCCCSTTSSSSCEECCC-SSCEEEEEECSSEEEEEETTSCEEEEECEECSSSEEESBTTBC--EEE
T ss_pred EEEEEECCCCCCCCCCCCCCCCCCCCEEECC-CCCEEEEECCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCC--CCE
T ss_conf 4998678998589998767865657759747-9978999848682899917996999769889899867477888--723
Q ss_pred CEEEECCCCCCEEEEEECCCEEEEEEECCCEEEEECCCCCCCC-------------------CCCEECCCCCCCEEEEEE
Q ss_conf 5034126899789999338739999608969999337888898-------------------542230136875999996
Q 001480 343 PRVVESLKGKDLVGVAAAKYHTIVLGADGERVIVARNLKKSGS-------------------TPLKFHRKIKLHVVSIAA 403 (1071)
Q Consensus 343 P~~V~~l~~~~I~~IaaG~~hTivLt~dG~Vy~wG~n~~~~~~-------------------~p~~~~~~~~~~Iv~Iaa 403 (1071)
|. ..+.+.+|++|+||.+|+++|+.+|+||+||.|..++.. .|..+.......|++|+|
T Consensus 172 p~--~~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~v~~i~~ 249 (423)
T 3mvd_K 172 PI--DLMEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWA 249 (423)
T ss_dssp EE--ESSTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEECCTTCCCEEEEEE
T ss_pred EE--EECCCCCEEEEECCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEE
T ss_conf 46--9669985899953897499992698099962786785477764344543334533356876884068862799997
Q ss_pred CCCCCEEE-ECCCCEEEEECCCCCCC----------EEEEEECCCCEEEEEEECCCEEEEEEECCCEEEECCCCCCC---
Q ss_conf 79820688-26983999808999972----------02310037960599971795899995089499966999999---
Q 001480 404 GMVHSTAL-TEDGALFYWASSDPDLR----------CQQLYSMCGRNVVSISAGKYWTAAVTATGDVYMWDGKKSKD--- 469 (1071)
Q Consensus 404 G~~hslaL-T~dG~Vy~WGsn~~~~~----------p~~v~~l~g~~Vv~IaaG~~hs~aLT~dG~Vy~WG~N~~~~--- 469 (1071)
|..|++++ +++|.||+||.|..+.. +.++.. ...+|++|+||.+|+++|+++|+||+||.|..++
T Consensus 250 g~~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~-~~~~v~~ia~G~~ht~alt~~G~v~~wG~n~~GqLG~ 328 (423)
T 3mvd_K 250 TNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKT-ELKDIRHIAGGQHHTVILTTDLKCSVVGRPEYGRLGL 328 (423)
T ss_dssp ETTEEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEE-CCCSEEEEEECSSEEEEEETTCCEEEEECCGGGTTCS
T ss_pred CCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCEEEEEEEC-CCCCEEEEECCCCEEEEEECCCCEEEEECCCCCCCCC
T ss_conf 996799998899949997499987679999887414644870-7887489972467699995899399997998888798
Q ss_pred -----CCCCEEEECCCC-CEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf -----998437746865-489999438748999807998459988899774446999
Q 001480 470 -----NPPLVTRLHGIK-KATSVSVGETHLLIVGSLYHPIYPPNVAKNPQKLKLNGR 520 (1071)
Q Consensus 470 -----~~~~p~~v~~~~-~V~~Va~G~~HtivL~s~~~~~~~~G~~~~gq~~~~~~~ 520 (1071)
....|..+..+. +|++|+||.+|+++|+.. +.+|+||.+.+||++.-...
T Consensus 329 g~~~~~~~~p~~v~~l~~~v~~ia~G~~hs~alt~~-G~v~~wG~n~~GqLG~g~~~ 384 (423)
T 3mvd_K 329 GDVKDVVEKPTIVKKLTEKIVSVGCGEVCSYAVTID-GKLYSWGSGVNNQLGVGDGD 384 (423)
T ss_dssp SSCCSCEEEEEECTTCCSCEEEEEEETTEEEEEETT-SCEEEEECCTTSCSSSSSSC
T ss_pred CCCCCCCCCCEEECCCCCCEEEEECCCCEEEEECCC-CCEEEECCCCCCCCCCCCCC
T ss_conf 986665468667214799779997689869999589-98899799979898799997
Done!