BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001481
(1071 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q4KLU2|PRP39_XENLA Pre-mRNA-processing factor 39 OS=Xenopus laevis GN=prpf39 PE=2 SV=1
Length = 641
Score = 214 bits (544), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 159/533 (29%), Positives = 261/533 (48%), Gaps = 51/533 (9%)
Query: 36 DFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEV 95
DF+ WT LL +E + + +D+FLA +P CYGYW+KYAD + + +I + EV
Sbjct: 69 DFNTWTYLLQYVEQE--NHLFAARKAFDAFLAHYPYCYGYWKKYADLEKKNNNILEADEV 126
Query: 96 FERAVQSATYSVDVWFHYCSLSMSTFEDPND------VRRLFKRALSFVGKDYLCHTMWD 149
+ R +Q+ T SVD+W HY + T DP D +R F+ A+ G D+ +W+
Sbjct: 127 YRRGIQAITLSVDLWMHYLNFLKETL-DPADPETSLTLRGTFEHAVVSAGLDFRSDKLWE 185
Query: 150 KYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKK-LAGAWKEELECESDSAMEFQ 208
YI +E Q S + I+ + L P++ ++ FK+ + G E S+ +E +
Sbjct: 186 MYINWETEQGNLSGVTSIYSRLLGIPTQFYSLHFQRFKEHIQGHLPREF-LTSEKFIELR 244
Query: 209 SEL---VLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDE 265
EL L G +D+ S ++++ DP+ R+ ++ R ++++E L+E
Sbjct: 245 KELASMTLHGGT-----NDDIPSGLEEIKDPAK---RTTEVENMRHRIIEVHQEIFNLNE 296
Query: 266 ----KINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCAD 321
KI FE I+RPYFHVKPL+ QL NW +YL F + G + +V L+ERC+I CA
Sbjct: 297 HEVSKIWNFEEEIKRPYFHVKPLEKAQLNNWKEYLEFELENGSNERIVILFERCVIACAC 356
Query: 322 YPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAF 381
Y EFW++Y +ME+ E + +RA + L + P++HL A ++EQ G+ AR
Sbjct: 357 YEEFWIKYAKYMENHSV-EGVRHVYNRACHVHLAKKPMVHLLWAAFEEQQGNLEEARRIL 415
Query: 382 PESYIDSDSRFIEKVTF-KANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLY-VQF 439
I++ + V + N+ERR GN A + LE A + K + Y ++
Sbjct: 416 KN--IETAIEGLAMVRLRRVNLERRHGNVKEA----EHLLEEAMNKTKTSSESSFYAIKL 469
Query: 440 SRLTYTTTGSADNARDILIDGI-KHVPNCKL---LLEELIKFTMVHGGRSHISIVDAVIS 495
+R + + AR +L + I K N KL LLE + + ++ D I
Sbjct: 470 ARHLFKVQANVVKARKVLSNAIQKDKENTKLYLNLLEMEYNCDIKQNEENILAAFDKAIK 529
Query: 496 NALYSRPDVLKV-FSLEDVEDISSLYLQQFLDLCGTIHDIRNAWNQHIKLFPH 547
+ + ++V FS VE + D ++ + + +N+H KL H
Sbjct: 530 SPM---SIAMRVKFSQRKVEFLE--------DFGSDVNKLLDTYNEHQKLLKH 571
>sp|O74970|PRP39_SCHPO Pre-mRNA-processing factor 39 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=prp39 PE=3 SV=1
Length = 612
Score = 200 bits (509), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 135/457 (29%), Positives = 226/457 (49%), Gaps = 22/457 (4%)
Query: 36 DFDEWTSLLSEIE--------NSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLC 87
DFD W L+ E NS I + VYD FL ++PL +GYW+KYAD + +
Sbjct: 27 DFDAWEGLVRASEHLEGGVGRNSSKQAINTLRSVYDRFLGKYPLLFGYWKKYADFEFFVA 86
Query: 88 SIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTM 147
+ ++ER + +SVD+W +YC+ M T D N+VR LF + + VG D+L H
Sbjct: 87 GAEASEHIYERGIAGIPHSVDLWTNYCAFKMETNGDANEVRELFMQGANMVGLDFLSHPF 146
Query: 148 WDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEF 207
WDKY+EFE Q+R ++ Q+ + + P + Y++ F +++ + + D
Sbjct: 147 WDKYLEFEERQERPDNVFQLLERLIHIPLHQYARYFERFVQVSQSQPIQQLLPPDVLASI 206
Query: 208 QSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKI 267
++++ E PA + + + +++ R + Y I QI+++ K
Sbjct: 207 RADVTRE---PAKVVSAGSKQITVE--RGELEIEREMRARIYN-IHLQIFQKVQLETAKR 260
Query: 268 NCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWM 327
FE+ I+RPYFHVK LD+ QL NW YL F E +GDF + LYERCLI CA Y EFW
Sbjct: 261 WTFESEIKRPYFHVKELDEAQLVNWRKYLDFEEVEGDFQRICHLYERCLITCALYDEFWF 320
Query: 328 RYVDFMESKGGR-EIASYALDRATQIF--LKRLPVIHLFNARYKEQIGDTSAARAAFPES 384
RY +M ++ S +RA+ IF + R P I + A ++E G+ ++A+A + +S
Sbjct: 321 RYARWMSAQPDHLNDVSIIYERASCIFASISR-PGIRVQYALFEESQGNIASAKAIY-QS 378
Query: 385 YIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHT--LPLLYVQFSRL 442
+ +E V +ERR + + L + + K +T +L + +L
Sbjct: 379 ILTQLPGNLEAVLGWVGLERRNAPNYDLTNAHA-VLRSIINEGKCNTGITEVLITEDIKL 437
Query: 443 TYTTTGSADNARDILIDGIKHVPNCKLLLEELIKFTM 479
+ G + AR++ + + +C+ ++F +
Sbjct: 438 VWKIEGDIELARNMFLQNAPALLDCRHFWISFLRFEL 474
>sp|Q86UA1|PRP39_HUMAN Pre-mRNA-processing factor 39 OS=Homo sapiens GN=PRPF39 PE=1 SV=3
Length = 669
Score = 199 bits (505), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 138/457 (30%), Positives = 222/457 (48%), Gaps = 34/457 (7%)
Query: 36 DFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEV 95
DF W LL +E + + +D F +P CYGYW+KYAD + R +I EV
Sbjct: 94 DFTGWVYLLQYVEQE--NHLMAARKAFDRFFIHYPYCYGYWKKYADLEKRHDNIKPSDEV 151
Query: 96 FERAVQSATYSVDVWFHYCSLSMSTFE--DP---NDVRRLFKRALSFVGKDYLCHTMWDK 150
+ R +Q+ SVD+W HY + T + DP N +R F+ A+ G D+ +W+
Sbjct: 152 YRRGLQAIPLSVDLWIHYINFLKETLDPGDPETNNTIRGTFEHAVLAAGTDFRSDRLWEM 211
Query: 151 YIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSE 210
YI +E Q + I+ + L P++ H++ FK+ + ++ + E
Sbjct: 212 YINWENEQGNLREVTAIYDRILGIPTQLYSHHFQRFKEHVQNNLPRDLLTGEQFIQLRRE 271
Query: 211 LVLEGEVPAYYKDD-----ETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDE 265
L V + DD + S I+D+ DP+ L+ ++R I +I++E +E
Sbjct: 272 L---ASVNGHSGDDGPPGDDLPSGIEDITDPA-KLITEIENMRHRII--EIHQEMFNYNE 325
Query: 266 ----KINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCAD 321
K FE I+RPYFHVKPL+ QLKNW +YL F + G + VV L+ERC+I CA
Sbjct: 326 HEVSKRWTFEEGIKRPYFHVKPLEKAQLKNWKEYLEFEIENGTHERVVVLFERCVISCAL 385
Query: 322 YPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAAR--- 378
Y EFW++Y +ME+ E + RA I L + P++H+ A ++EQ G+ + AR
Sbjct: 386 YEEFWIKYAKYMENH-SIEGVRHVFSRACTIHLPKKPMVHMLWAAFEEQQGNINEARNIL 444
Query: 379 AAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQ 438
F E + + +V+ +ERR GN A ++A++ A + V+
Sbjct: 445 KTFEECVLGLAMVRLRRVS----LERRHGNLEEAEHLLQDAIKNAKSNNE---SSFYAVK 497
Query: 439 FSRLTYTTTGSADNARDILIDGI-KHVPNCKLLLEEL 474
+R + + +R +L++ I + N KL L L
Sbjct: 498 LARHLFKIQKNLPKSRKVLLEAIERDKENTKLYLNLL 534
>sp|Q1JPZ7|PRP39_DANRE Pre-mRNA-processing factor 39 OS=Danio rerio GN=prpf39 PE=2 SV=2
Length = 752
Score = 184 bits (468), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 127/468 (27%), Positives = 219/468 (46%), Gaps = 35/468 (7%)
Query: 14 EPNSPVGFGKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIG--LVYDSFLAEFPL 71
EP P + + L + + + DF+ W LL +E + ++G +D+F +P
Sbjct: 145 EPELPTEYER--LSKVVEDNPEDFNGWVYLLQYVEQ----ENHLLGSRKAFDAFFLHYPY 198
Query: 72 CYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSL-----SMSTFEDPND 126
CYGYW+KYAD + + I EV+ R +Q+ SVD+W HY + S E +
Sbjct: 199 CYGYWKKYADIERKHGYIQMADEVYRRGLQAIPLSVDLWLHYITFLRENQDTSDGEAESR 258
Query: 127 VRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSF 186
+R ++ A+ G D+ +W+ YI +E Q + +++ I+ + L P++ ++ F
Sbjct: 259 IRASYEHAVLACGTDFRSDRLWEAYIAWETEQGKLANVTAIYDRLLCIPTQLYSQHFQKF 318
Query: 187 KKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSS-------VIKDLLDPS-- 237
K + + + + + EL P+ +D ET + +DL DP+
Sbjct: 319 KDHVQSNNPKHFLSEEEFVSLRVELA-NANKPSGDEDAETEAPGEELPPGTEDLPDPAKR 377
Query: 238 ---VDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHD 294
++ +R K I+ + + E S K FE I+RPYFHVK L+ QL NW +
Sbjct: 378 VTEIENMRHKVIETRQEMFNHNEHEVS----KRWAFEEGIKRPYFHVKALEKTQLNNWRE 433
Query: 295 YLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFL 354
YL F + G + VV L+ERCLI CA Y EFW++Y ++ES E + +A + L
Sbjct: 434 YLDFELENGTPERVVVLFERCLIACALYEEFWIKYAKYLESY-STEAVRHIYKKACTVHL 492
Query: 355 KRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACD 414
+ P +HL A ++EQ G AR+ + + ++ + ++ERR GN A
Sbjct: 493 PKKPNVHLLWAAFEEQQGSIDEARSILKAVEVSVPGLAMVRLR-RVSLERRHGNMEEAEA 551
Query: 415 TYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIK 462
++A+ R V+ +R S A+ +L++ ++
Sbjct: 552 LLQDAITNG---RNSSESSFYSVKLARQLVKVQKSIGRAKKVLLEAVE 596
>sp|Q8K2Z2|PRP39_MOUSE Pre-mRNA-processing factor 39 OS=Mus musculus GN=Prpf39 PE=2 SV=3
Length = 665
Score = 184 bits (468), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 158/566 (27%), Positives = 259/566 (45%), Gaps = 61/566 (10%)
Query: 7 NLESLSAEPNSPVGFGKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFL 66
NL AE + P F K + + DF W LL +E + + +D F
Sbjct: 65 NLPVTEAEGDFPPEFEK--FWKTVEMNPQDFTGWVYLLQYVEQE--NHLMAARKAFDKFF 120
Query: 67 AEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPND 126
+P CYGYW+KYAD + R +I + EV+ R +Q+ SVD+W HY + T E P D
Sbjct: 121 VHYPYCYGYWKKYADLEKRHDNIKQSDEVYRRGLQAIPLSVDLWIHYINFLKETLE-PGD 179
Query: 127 ------VRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLH 180
+R F+ A+ G D+ +W+ YI +E Q + ++ + L P++
Sbjct: 180 QETNTTIRGTFEHAVLAAGTDFRSDKLWEMYINWENEQGNLREVTAVYDRILGIPTQLYS 239
Query: 181 HYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKD-----DETSSVIKDLLD 235
H++ FK+ + ++ + EL V + D D+ S I+D+
Sbjct: 240 HHFQRFKEHVQNNLPRDLLTGEQFIQLRREL---ASVNGHSGDDGPPGDDLPSGIEDI-- 294
Query: 236 PSVDLVRSKAIQKYRFIGEQIYKEASQLDE----KINCFENLIRRPYFHVKPLDDIQ-LK 290
L+ ++R I +I++E +E K FE I+RPYFHVKPL+ Q K
Sbjct: 295 SPAKLITEIENMRHRII--EIHQEMFNYNEHEVSKRWTFEEGIKRPYFHVKPLEKAQPKK 352
Query: 291 NWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRAT 350
NW +YL F + G + VV L+ERC+I CA Y EFW++Y +ME+ E + RA
Sbjct: 353 NWKEYLEFEIENGTHERVVVLFERCVISCALYEEFWIKYAKYMENH-SIEGVRHVFSRAC 411
Query: 351 QIFLKRLPVIHLFNARYKEQIGDTSAARA---AFPESYIDSDSRFIEKVTFKANMERRLG 407
+ L + P+ H+ A ++EQ G+ + AR F E + + +V+ +ERR G
Sbjct: 412 TVHLPKKPMAHMLWAAFEEQQGNINEARIILRTFEECVLGLAMVRLRRVS----LERRHG 467
Query: 408 NFVAACDTYKEALETAAEQRK--FHTLPLLYVQFSRLTYTTTGSADNARDILIDGI-KHV 464
N A ++A++ A + F+ + L +R + + +R +L++ I K
Sbjct: 468 NMEEAEHLLQDAIKNAKSNNESSFYAIKL-----ARHLFKIQKNLPKSRKVLLEAIEKDK 522
Query: 465 PNCKL---LLEELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKV-FSLEDVEDISSLY 520
N KL LLE + + ++ D I +L P +++ FS VE
Sbjct: 523 ENTKLYLNLLEMEYSCDLKQNEENILNCFDKAIHGSL---PIKMRITFSQRKVE------ 573
Query: 521 LQQFL-DLCGTIHDIRNAWNQHIKLF 545
FL D ++ + NA+++H L
Sbjct: 574 ---FLEDFGSDVNKLLNAYDEHQTLL 596
>sp|Q7KRW8|PRP39_DROME Pre-mRNA-processing factor 39 OS=Drosophila melanogaster GN=CG1646
PE=1 SV=1
Length = 1066
Score = 117 bits (292), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 57/161 (35%), Positives = 90/161 (55%), Gaps = 3/161 (1%)
Query: 30 IAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSI 89
+ E S DF WT LL ++N D E YD+FL+ +P CYGYWRKYAD++ R
Sbjct: 372 VKEDSTDFTGWTYLLQYVDNES--DAEAAREAYDTFLSHYPYCYGYWRKYADYEKRKGIK 429
Query: 90 DKVVEVFERAVQSATYSVDVWFHYCSLSMSTF-EDPNDVRRLFKRALSFVGKDYLCHTMW 148
+VFER +++ SVD+W HY S +D VR ++RA+ G ++ +W
Sbjct: 430 ANCYKVFERGLEAIPLSVDLWIHYLMHVKSNHGDDETFVRSQYERAVKACGLEFRSDKLW 489
Query: 149 DKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKL 189
D YI +E +R+ + QI+ + L P++ + ++D+F+ L
Sbjct: 490 DAYIRWENESKRYHRVVQIYDRLLAIPTQGYNGHFDNFQDL 530
Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 72/218 (33%), Positives = 111/218 (50%), Gaps = 13/218 (5%)
Query: 228 SVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDI 287
S + L D V +R +AI R +++K FE I+RPYFHVKPL+
Sbjct: 648 SDLSTLNDEEVVSIRDRAISARR----KVHKLTVSAVTARWSFEEGIKRPYFHVKPLERA 703
Query: 288 QLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMES----KGGREIAS 343
QLKNW DYL F ++GD + V+ L+ERCLI CA Y EFW++ + ++ES G ++
Sbjct: 704 QLKNWKDYLDFEIEKGDRERVLVLFERCLIACALYDEFWLKMLRYLESLEDQSGVVDLVR 763
Query: 344 YALDRATQIFLKRLPVIHLFNARYKE-QIGDTSAARAAFPESYIDSDSRFIEKVTF-KAN 401
RA +I P +HL A ++E Q+ AA ID + ++++ + N
Sbjct: 764 DVYRRACRIHHPDKPSLHLMWAAFEECQMNFDDAAEIL---QRIDQRCPNLLQLSYRRIN 820
Query: 402 MERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQF 439
+ERR G + YK +E+ + +L + Y +F
Sbjct: 821 VERRRGALDKCRELYKHYIESTKNKGIAGSLAIKYARF 858
>sp|P39682|PRP39_YEAST Pre-mRNA-processing factor 39 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=PRP39 PE=1 SV=1
Length = 629
Score = 104 bits (260), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 67/278 (24%), Positives = 129/278 (46%), Gaps = 60/278 (21%)
Query: 66 LAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPN 125
L ++PL +G+W+++A + +L + K + V +V+ S+++W Y L++ +PN
Sbjct: 81 LRKYPLLFGFWKRFATIEYQLFGLKKSIAVLATSVKWFPTSLELWCDY--LNVLCVNNPN 138
Query: 126 D---VRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHY 182
+ +R F+ A +GK +L H WDK+IEFE+ Q+ W ++ +I+ + P + +
Sbjct: 139 ETDFIRNNFEIAKDLIGKQFLSHPFWDKFIEFEVGQKNWHNVQRIYEYIIEVPLHQYARF 198
Query: 183 YDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVR 242
+ S+KK +
Sbjct: 199 FTSYKK---------------------------------------------------FLN 207
Query: 243 SKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFA--- 299
K ++ R I + K + ++E I FE+ I++P+F++ + + L+NW YL F
Sbjct: 208 EKNLKTTRNIDIVLRKTQTTVNE-IWQFESKIKQPFFNLGQVLNDDLENWSRYLKFVTDP 266
Query: 300 EKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKG 337
K D ++V+ +++RCLIPC + WM Y+ ++ K
Sbjct: 267 SKSLDKEFVMSVFDRCLIPCLYHENTWMMYIKWLTKKN 304
>sp|Q8ILR9|YPF17_PLAF7 Protein PF14_0175 OS=Plasmodium falciparum (isolate 3D7) GN=PF14_0175
PE=4 SV=1
Length = 4662
Score = 36.2 bits (82), Expect = 1.7, Method: Composition-based stats.
Identities = 47/205 (22%), Positives = 79/205 (38%), Gaps = 32/205 (15%)
Query: 845 GYRGHSHKRQH--QQRRFSSQRYPRNESGDQMPMNSRFPSQPLPS---QNPQAQQGSQAQ 899
GY H +Q QQ R +R + + R + L Q + QQ Q
Sbjct: 4198 GYSTHDMNQQERLQQERLQQERLQQERLQQERLQQERLQQERLQQERLQQERLQQERLQQ 4257
Query: 900 SQFLHSLTAQAWPMQNMQQQTFASASQSEVPAQPVFYPQAQMSQYPSQSSEQQGLLQSN- 958
+ Q W Q +QQ+ + + + +++ + S LQ N
Sbjct: 4258 ERLQQERLQQKWEQQKIQQELYQKSHNDK---------ESETNNSSSYQELNNHTLQENT 4308
Query: 959 LAYNQMWQYYYYQQQQQQQL----------FLQQQHLQLQQQHLQPLQQQQFVQQQQYQQ 1008
+A + M Q+ + + +QQ+ + LQ + ++ QQ LQQQ + QQ Q
Sbjct: 4309 IAKDSMRQHIFLKTRQQENIPKELQKMHSHQLQTEKMKTQQLSAHSLQQQMYPQQMTSQV 4368
Query: 1009 QHSLY-------LQQQPQHQQLEQY 1026
S + LQQQ HQQ+ ++
Sbjct: 4369 HSSFHAQKIKQQLQQQMNHQQINKH 4393
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.129 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 398,767,076
Number of Sequences: 539616
Number of extensions: 17304564
Number of successful extensions: 196329
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1111
Number of HSP's successfully gapped in prelim test: 1018
Number of HSP's that attempted gapping in prelim test: 75917
Number of HSP's gapped (non-prelim): 35157
length of query: 1071
length of database: 191,569,459
effective HSP length: 128
effective length of query: 943
effective length of database: 122,498,611
effective search space: 115516190173
effective search space used: 115516190173
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 67 (30.4 bits)