Query 001481
Match_columns 1071
No_of_seqs 593 out of 3350
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 01:54:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001481.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001481hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0495 HAT repeat protein [RN 100.0 6.9E-52 1.5E-56 461.1 42.0 490 22-586 334-831 (913)
2 KOG2047 mRNA splicing factor [ 100.0 2.2E-47 4.7E-52 425.4 43.1 548 25-603 15-677 (835)
3 KOG1914 mRNA cleavage and poly 100.0 3.1E-46 6.8E-51 410.3 48.6 478 25-579 8-527 (656)
4 KOG1258 mRNA processing protei 100.0 1.3E-43 2.8E-48 400.2 47.8 510 25-545 33-545 (577)
5 KOG1915 Cell cycle control pro 100.0 8.1E-41 1.8E-45 361.3 42.6 496 10-550 36-591 (677)
6 COG5107 RNA14 Pre-mRNA 3'-end 100.0 2.2E-37 4.7E-42 332.9 39.0 464 15-550 20-537 (660)
7 KOG1915 Cell cycle control pro 100.0 1.8E-36 4E-41 327.6 43.9 450 57-550 57-542 (677)
8 KOG0495 HAT repeat protein [RN 100.0 8.2E-32 1.8E-36 301.2 42.5 476 24-550 272-754 (913)
9 KOG2047 mRNA splicing factor [ 100.0 1.7E-29 3.6E-34 282.8 47.6 506 23-550 46-693 (835)
10 KOG4626 O-linked N-acetylgluco 100.0 7.5E-29 1.6E-33 275.7 32.4 385 25-503 104-488 (966)
11 KOG4626 O-linked N-acetylgluco 100.0 9.2E-29 2E-33 275.0 30.4 396 53-550 96-491 (966)
12 TIGR02917 PEP_TPR_lipo putativ 99.9 4.7E-23 1E-27 265.9 56.0 477 23-550 383-872 (899)
13 KOG0128 RNA-binding protein SA 99.9 5.1E-24 1.1E-28 246.6 40.9 438 22-543 98-562 (881)
14 TIGR02917 PEP_TPR_lipo putativ 99.9 8.3E-23 1.8E-27 263.6 56.4 480 22-549 144-669 (899)
15 PRK11447 cellulose synthase su 99.9 1E-21 2.2E-26 258.4 53.6 481 22-550 47-638 (1157)
16 TIGR00990 3a0801s09 mitochondr 99.9 1.5E-21 3.3E-26 241.3 51.4 438 39-548 129-575 (615)
17 PRK11447 cellulose synthase su 99.9 2E-21 4.4E-26 255.5 50.8 442 44-545 276-741 (1157)
18 TIGR00990 3a0801s09 mitochondr 99.9 4.7E-20 1E-24 228.1 48.3 420 22-500 146-571 (615)
19 KOG1914 mRNA cleavage and poly 99.9 2.3E-19 5E-24 199.1 43.0 421 18-493 34-497 (656)
20 PRK15174 Vi polysaccharide exp 99.9 1.8E-19 3.8E-24 222.7 43.7 335 43-468 48-386 (656)
21 PRK10049 pgaA outer membrane p 99.9 4.9E-19 1.1E-23 223.2 47.2 401 25-503 37-459 (765)
22 PRK15174 Vi polysaccharide exp 99.9 5.5E-19 1.2E-23 218.3 44.8 348 23-474 62-416 (656)
23 PRK09782 bacteriophage N4 rece 99.9 9.7E-18 2.1E-22 211.7 53.9 494 23-551 64-713 (987)
24 KOG2396 HAT (Half-A-TPR) repea 99.9 1.1E-17 2.5E-22 184.9 43.4 446 25-547 93-562 (568)
25 PRK10049 pgaA outer membrane p 99.8 6.4E-18 1.4E-22 213.1 43.4 423 32-550 13-462 (765)
26 PRK09782 bacteriophage N4 rece 99.8 8.6E-17 1.9E-21 203.2 47.0 234 292-549 512-745 (987)
27 KOG1070 rRNA processing protei 99.8 8.4E-19 1.8E-23 211.3 26.8 251 268-545 1445-1701(1710)
28 KOG0547 Translocase of outer m 99.8 5.6E-16 1.2E-20 170.6 37.9 430 53-547 129-569 (606)
29 KOG2002 TPR-containing nuclear 99.7 1.3E-14 2.8E-19 171.8 41.7 509 15-550 142-751 (1018)
30 KOG0547 Translocase of outer m 99.7 5.6E-15 1.2E-19 162.9 35.2 417 22-499 134-565 (606)
31 PRK11788 tetratricopeptide rep 99.7 8E-15 1.7E-19 171.5 38.2 301 82-503 44-354 (389)
32 KOG2002 TPR-containing nuclear 99.7 1.4E-13 3E-18 163.3 47.5 480 25-548 116-645 (1018)
33 KOG2076 RNA polymerase III tra 99.7 9.4E-14 2E-18 163.8 44.6 495 23-550 159-775 (895)
34 PRK11788 tetratricopeptide rep 99.7 1.2E-14 2.5E-19 170.1 37.2 292 53-462 49-346 (389)
35 KOG1258 mRNA processing protei 99.7 7.6E-15 1.6E-19 167.7 33.8 446 24-550 19-476 (577)
36 PLN03218 maturation of RBCL 1; 99.7 1.7E-13 3.7E-18 174.6 49.0 409 35-545 368-784 (1060)
37 KOG1070 rRNA processing protei 99.7 8.1E-16 1.8E-20 186.0 23.5 217 307-545 1442-1664(1710)
38 PF13429 TPR_15: Tetratricopep 99.7 8.5E-17 1.8E-21 179.3 13.4 134 287-422 144-277 (280)
39 PLN03218 maturation of RBCL 1; 99.7 1.2E-12 2.6E-17 167.0 51.8 387 24-463 391-783 (1060)
40 KOG1155 Anaphase-promoting com 99.7 2E-13 4.4E-18 150.0 38.1 184 296-488 337-527 (559)
41 PRK14574 hmsH outer membrane p 99.7 7.6E-13 1.7E-17 164.5 48.0 438 22-503 53-516 (822)
42 PLN03081 pentatricopeptide (PP 99.7 1.5E-13 3.3E-18 172.8 42.2 437 36-550 86-529 (697)
43 PF13429 TPR_15: Tetratricopep 99.7 3.6E-16 7.9E-21 174.3 13.3 165 290-463 111-277 (280)
44 PF05843 Suf: Suppressor of fo 99.7 4.6E-16 1E-20 172.2 12.5 138 394-548 2-140 (280)
45 KOG1155 Anaphase-promoting com 99.7 1.2E-12 2.6E-17 144.0 38.5 260 261-544 276-536 (559)
46 PLN03077 Protein ECB2; Provisi 99.6 7.3E-13 1.6E-17 170.6 42.5 457 35-550 220-692 (857)
47 PRK14574 hmsH outer membrane p 99.6 3.6E-12 7.8E-17 158.5 44.3 406 23-469 88-519 (822)
48 KOG1126 DNA-binding cell divis 99.6 7.8E-14 1.7E-18 160.3 27.1 119 53-175 333-451 (638)
49 COG5107 RNA14 Pre-mRNA 3'-end 99.6 9.2E-13 2E-17 143.7 33.4 415 20-488 59-522 (660)
50 KOG2076 RNA polymerase III tra 99.6 1.7E-11 3.7E-16 145.1 46.5 384 37-452 139-544 (895)
51 PLN03081 pentatricopeptide (PP 99.6 1.9E-12 4.1E-17 162.8 41.7 441 25-545 109-558 (697)
52 KOG2396 HAT (Half-A-TPR) repea 99.6 9.5E-12 2.1E-16 138.5 41.7 439 25-548 39-529 (568)
53 COG3063 PilF Tfp pilus assembl 99.6 2.4E-13 5.1E-18 138.2 22.7 206 325-550 37-242 (250)
54 KOG1126 DNA-binding cell divis 99.6 6E-13 1.3E-17 153.1 27.0 207 284-502 416-622 (638)
55 PLN03077 Protein ECB2; Provisi 99.6 1.1E-11 2.4E-16 159.7 40.2 199 290-502 525-726 (857)
56 TIGR02521 type_IV_pilW type IV 99.5 1.1E-12 2.4E-17 140.3 25.3 193 288-488 30-223 (234)
57 TIGR00540 hemY_coli hemY prote 99.5 4.1E-11 9E-16 140.8 39.1 145 26-174 61-216 (409)
58 PF05843 Suf: Suppressor of fo 99.5 4.8E-14 1E-18 156.2 12.5 132 39-173 3-135 (280)
59 COG3063 PilF Tfp pilus assembl 99.5 1.5E-12 3.3E-17 132.3 21.5 189 290-488 36-227 (250)
60 PRK12370 invasion protein regu 99.5 2.8E-12 6.1E-17 156.3 28.4 249 264-544 278-535 (553)
61 KOG1173 Anaphase-promoting com 99.5 3.8E-11 8.2E-16 135.6 33.0 366 46-503 150-521 (611)
62 KOG2003 TPR repeat-containing 99.5 3E-11 6.4E-16 131.6 30.6 460 42-550 206-695 (840)
63 PRK12370 invasion protein regu 99.5 4.9E-12 1.1E-16 154.2 26.7 204 285-500 252-470 (553)
64 TIGR02521 type_IV_pilW type IV 99.5 6.6E-12 1.4E-16 134.3 24.4 205 322-546 30-234 (234)
65 PRK10747 putative protoheme IX 99.5 2.2E-10 4.7E-15 134.1 37.9 319 27-464 62-391 (398)
66 TIGR00540 hemY_coli hemY prote 99.5 8.6E-11 1.9E-15 138.1 33.2 290 23-423 104-400 (409)
67 KOG4162 Predicted calmodulin-b 99.4 1.9E-09 4.1E-14 126.1 43.0 257 266-549 463-788 (799)
68 KOG2003 TPR repeat-containing 99.4 6.9E-11 1.5E-15 128.8 28.2 199 292-502 493-691 (840)
69 KOG1173 Anaphase-promoting com 99.4 1.3E-10 2.9E-15 131.3 31.0 354 23-469 161-524 (611)
70 KOG1174 Anaphase-promoting com 99.4 2E-10 4.2E-15 124.9 30.9 364 25-483 152-520 (564)
71 PRK11189 lipoprotein NlpI; Pro 99.4 3.5E-11 7.5E-16 134.9 26.4 200 287-502 62-267 (296)
72 KOG0548 Molecular co-chaperone 99.4 6.9E-10 1.5E-14 125.3 35.9 425 22-498 21-487 (539)
73 KOG0128 RNA-binding protein SA 99.4 8.3E-10 1.8E-14 129.7 37.3 405 54-546 94-528 (881)
74 PRK11189 lipoprotein NlpI; Pro 99.4 2.9E-11 6.3E-16 135.5 22.9 224 304-547 41-268 (296)
75 PRK10747 putative protoheme IX 99.4 4.2E-10 9E-15 131.7 32.5 288 22-423 99-391 (398)
76 KOG1174 Anaphase-promoting com 99.3 7.2E-09 1.6E-13 113.0 36.2 259 262-550 247-506 (564)
77 KOG4162 Predicted calmodulin-b 99.3 7.7E-09 1.7E-13 121.1 38.7 132 359-501 651-784 (799)
78 PLN02789 farnesyltranstransfer 99.3 5.1E-10 1.1E-14 125.5 26.8 205 288-501 36-251 (320)
79 KOG1156 N-terminal acetyltrans 99.3 9.9E-08 2.2E-12 110.0 42.6 100 390-496 366-467 (700)
80 KOG1840 Kinesin light chain [C 99.3 1.1E-09 2.3E-14 128.2 26.9 255 284-548 194-483 (508)
81 KOG1127 TPR repeat-containing 99.3 2.5E-09 5.3E-14 127.3 29.6 447 20-483 475-982 (1238)
82 KOG1125 TPR repeat-containing 99.3 1.5E-10 3.2E-15 131.7 18.1 250 263-535 301-562 (579)
83 KOG0624 dsRNA-activated protei 99.2 3.8E-08 8.3E-13 105.0 34.3 329 32-470 33-377 (504)
84 KOG0548 Molecular co-chaperone 99.2 4.8E-08 1E-12 110.8 36.3 402 53-502 16-457 (539)
85 KOG1127 TPR repeat-containing 99.2 7.8E-09 1.7E-13 123.1 29.5 365 87-550 472-919 (1238)
86 KOG1129 TPR repeat-containing 99.2 3.2E-09 6.9E-14 112.4 23.4 234 294-550 228-464 (478)
87 PRK15359 type III secretion sy 99.2 6E-10 1.3E-14 110.8 15.8 125 343-479 13-137 (144)
88 KOG1125 TPR repeat-containing 99.2 9.9E-10 2.1E-14 125.1 19.1 231 295-549 291-532 (579)
89 KOG1840 Kinesin light chain [C 99.2 6.9E-09 1.5E-13 121.5 26.5 206 289-498 241-477 (508)
90 PLN02789 farnesyltranstransfer 99.2 7.2E-09 1.6E-13 116.3 25.7 199 265-480 55-267 (320)
91 cd05804 StaR_like StaR_like; a 99.2 8E-08 1.7E-12 111.0 34.9 313 33-463 2-336 (355)
92 KOG3060 Uncharacterized conser 99.1 9.6E-09 2.1E-13 106.1 23.2 190 304-502 27-222 (289)
93 COG2956 Predicted N-acetylgluc 99.1 5E-07 1.1E-11 96.5 36.0 201 291-502 143-353 (389)
94 PRK15179 Vi polysaccharide bio 99.1 4.7E-09 1E-13 128.8 22.3 164 330-504 56-221 (694)
95 TIGR03302 OM_YfiO outer membra 99.1 6.1E-09 1.3E-13 112.9 20.8 111 284-396 28-152 (235)
96 KOG2376 Signal recognition par 99.1 1.3E-06 2.8E-11 100.0 39.5 407 38-550 14-493 (652)
97 KOG1156 N-terminal acetyltrans 99.1 2.1E-06 4.5E-11 99.4 41.1 440 36-545 7-469 (700)
98 PF12569 NARP1: NMDA receptor- 99.1 7.3E-07 1.6E-11 105.9 39.1 308 44-427 11-339 (517)
99 PF08424 NRDE-2: NRDE-2, neces 99.1 4E-09 8.7E-14 119.2 19.0 150 24-173 6-182 (321)
100 PRK15359 type III secretion sy 99.0 3.2E-09 7E-14 105.6 14.4 126 308-444 12-137 (144)
101 PRK15179 Vi polysaccharide bio 99.0 1.1E-08 2.4E-13 125.4 21.5 134 287-422 84-217 (694)
102 cd05804 StaR_like StaR_like; a 99.0 1.2E-06 2.7E-11 101.0 37.0 175 285-463 110-293 (355)
103 KOG1128 Uncharacterized conser 99.0 1.3E-08 2.8E-13 118.6 19.4 228 286-550 395-622 (777)
104 KOG0624 dsRNA-activated protei 99.0 6.7E-07 1.4E-11 95.7 29.5 296 24-422 59-370 (504)
105 PRK10370 formate-dependent nit 99.0 2E-08 4.4E-13 105.3 18.0 116 305-422 55-173 (198)
106 KOG1129 TPR repeat-containing 99.0 1.4E-08 3.1E-13 107.6 16.3 206 289-503 256-461 (478)
107 PRK10370 formate-dependent nit 99.0 1.7E-08 3.8E-13 105.9 16.3 110 281-391 65-177 (198)
108 PRK14720 transcript cleavage f 98.9 6.3E-08 1.4E-12 119.6 23.0 134 284-421 26-177 (906)
109 TIGR03302 OM_YfiO outer membra 98.9 4.2E-08 9.2E-13 106.3 19.3 169 319-499 29-231 (235)
110 COG2956 Predicted N-acetylgluc 98.9 2E-07 4.3E-12 99.4 23.0 203 284-499 64-277 (389)
111 COG5010 TadD Flp pilus assembl 98.9 4.7E-08 1E-12 102.2 18.1 176 308-496 52-227 (257)
112 KOG3060 Uncharacterized conser 98.9 1.7E-07 3.7E-12 97.0 20.3 165 298-471 61-228 (289)
113 PRK14720 transcript cleavage f 98.9 8.9E-07 1.9E-11 109.6 28.5 159 63-353 21-179 (906)
114 COG3071 HemY Uncharacterized e 98.8 2.5E-05 5.5E-10 86.3 36.2 320 25-463 60-390 (400)
115 TIGR02552 LcrH_SycD type III s 98.8 6.1E-08 1.3E-12 95.2 14.6 121 345-474 5-125 (135)
116 KOG1128 Uncharacterized conser 98.8 6.3E-08 1.4E-12 113.0 16.4 194 287-499 422-615 (777)
117 PF12569 NARP1: NMDA receptor- 98.8 6.8E-06 1.5E-10 97.7 33.8 139 321-465 190-336 (517)
118 COG5010 TadD Flp pilus assembl 98.8 2E-07 4.4E-12 97.6 17.2 168 284-461 62-229 (257)
119 COG3071 HemY Uncharacterized e 98.8 2.4E-05 5.2E-10 86.4 33.4 234 287-545 151-391 (400)
120 TIGR02552 LcrH_SycD type III s 98.7 3.8E-07 8.3E-12 89.5 15.9 115 24-141 4-118 (135)
121 KOG0553 TPR repeat-containing 98.7 1.3E-07 2.9E-12 100.6 12.2 110 368-485 91-200 (304)
122 PRK15363 pathogenicity island 98.7 7.3E-07 1.6E-11 87.7 16.0 100 360-467 37-136 (157)
123 COG4783 Putative Zn-dependent 98.6 1.1E-05 2.3E-10 91.4 25.3 150 320-479 303-452 (484)
124 COG5191 Uncharacterized conser 98.6 1.5E-07 3.2E-12 99.4 9.8 139 25-172 39-198 (435)
125 PF08424 NRDE-2: NRDE-2, neces 98.6 2.8E-06 6E-11 96.2 19.4 112 58-173 4-130 (321)
126 KOG0550 Molecular chaperone (D 98.6 6.7E-06 1.4E-10 90.6 20.9 156 302-466 182-353 (486)
127 KOG0550 Molecular chaperone (D 98.5 3.2E-06 7E-11 93.1 17.6 283 262-579 64-382 (486)
128 KOG3617 WD40 and TPR repeat-co 98.5 9.5E-05 2.1E-09 87.2 30.0 213 290-540 913-1170(1416)
129 PRK15363 pathogenicity island 98.5 3E-06 6.5E-11 83.4 15.0 102 284-386 29-131 (157)
130 PLN03088 SGT1, suppressor of 98.5 2E-06 4.4E-11 98.9 15.6 105 365-477 9-113 (356)
131 COG4783 Putative Zn-dependent 98.5 7.3E-06 1.6E-10 92.7 19.2 162 287-474 304-465 (484)
132 COG5191 Uncharacterized conser 98.5 2.6E-07 5.7E-12 97.5 6.9 107 25-139 95-202 (435)
133 PF14938 SNAP: Soluble NSF att 98.4 9.1E-06 2E-10 90.6 18.7 180 304-502 30-227 (282)
134 KOG0553 TPR repeat-containing 98.4 4E-06 8.8E-11 89.5 14.7 110 292-403 84-193 (304)
135 KOG3617 WD40 and TPR repeat-co 98.4 5.9E-05 1.3E-09 88.8 24.3 136 290-461 859-994 (1416)
136 PLN03088 SGT1, suppressor of 98.4 3.6E-06 7.9E-11 96.8 14.7 95 299-395 12-106 (356)
137 KOG2376 Signal recognition par 98.4 0.0024 5.1E-08 74.1 36.1 140 338-480 356-504 (652)
138 PRK04841 transcriptional regul 98.4 0.0012 2.6E-08 86.4 39.4 251 292-550 494-766 (903)
139 KOG3598 Thyroid hormone recept 98.4 6.7E-06 1.4E-10 100.8 16.1 12 828-839 1963-1974(2220)
140 cd00189 TPR Tetratricopeptide 98.3 4.9E-06 1.1E-10 74.2 11.4 97 361-465 3-99 (100)
141 COG4235 Cytochrome c biogenesi 98.3 9.3E-06 2E-10 87.5 15.1 120 19-141 138-260 (287)
142 PRK04841 transcriptional regul 98.3 0.0014 3.1E-08 85.6 38.8 174 292-467 576-764 (903)
143 TIGR02795 tol_pal_ybgF tol-pal 98.3 1E-05 2.3E-10 76.9 13.5 106 359-469 3-111 (119)
144 KOG3785 Uncharacterized conser 98.3 0.0019 4.2E-08 70.1 30.6 127 357-488 284-413 (557)
145 PF14938 SNAP: Soluble NSF att 98.3 3.9E-05 8.6E-10 85.5 18.6 140 325-466 77-228 (282)
146 PF13414 TPR_11: TPR repeat; P 98.2 6.3E-06 1.4E-10 70.6 8.5 67 392-465 2-69 (69)
147 cd00189 TPR Tetratricopeptide 98.1 2.1E-05 4.6E-10 69.9 11.1 97 39-138 2-98 (100)
148 PF09976 TPR_21: Tetratricopep 98.1 7.3E-05 1.6E-09 74.5 15.9 117 301-420 23-145 (145)
149 KOG3616 Selective LIM binding 98.1 0.0072 1.6E-07 70.9 33.1 223 294-546 770-1026(1636)
150 TIGR02795 tol_pal_ybgF tol-pal 98.1 4.3E-05 9.4E-10 72.6 13.4 98 323-422 2-105 (119)
151 COG4235 Cytochrome c biogenesi 98.1 4.2E-05 9.1E-10 82.5 13.8 119 304-424 137-258 (287)
152 PRK10153 DNA-binding transcrip 98.1 5.6E-05 1.2E-09 90.6 16.0 142 285-434 333-488 (517)
153 PF04733 Coatomer_E: Coatomer 98.1 4E-05 8.6E-10 85.2 13.5 198 289-502 66-267 (290)
154 PF13432 TPR_16: Tetratricopep 98.1 1.2E-05 2.6E-10 68.0 7.2 62 399-467 3-64 (65)
155 KOG0543 FKBP-type peptidyl-pro 98.1 7.8E-05 1.7E-09 83.1 15.4 128 329-463 214-355 (397)
156 PRK02603 photosystem I assembl 98.1 8.8E-05 1.9E-09 76.2 14.9 120 320-468 32-154 (172)
157 PRK11906 transcriptional regul 98.0 0.00016 3.4E-09 82.7 17.8 147 304-463 273-436 (458)
158 PRK10153 DNA-binding transcrip 98.0 0.00014 3E-09 87.3 18.3 144 317-469 331-488 (517)
159 CHL00033 ycf3 photosystem I as 98.0 0.00015 3.3E-09 74.2 15.0 117 323-468 35-154 (168)
160 CHL00033 ycf3 photosystem I as 98.0 0.00012 2.7E-09 74.8 14.3 86 286-372 32-120 (168)
161 KOG2053 Mitochondrial inherita 98.0 0.1 2.3E-06 63.7 40.2 116 53-169 23-138 (932)
162 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.00024 5.3E-09 81.6 17.6 123 324-458 170-292 (395)
163 PF14559 TPR_19: Tetratricopep 97.9 3.5E-05 7.6E-10 65.7 7.7 66 404-476 2-67 (68)
164 PRK11906 transcriptional regul 97.9 0.00035 7.5E-09 80.0 17.7 135 339-482 274-422 (458)
165 PRK02603 photosystem I assembl 97.9 0.0002 4.4E-09 73.5 14.7 116 285-422 31-149 (172)
166 COG0457 NrfG FOG: TPR repeat [ 97.9 0.0084 1.8E-07 62.3 27.3 223 304-547 38-268 (291)
167 PF09295 ChAPs: ChAPs (Chs5p-A 97.9 0.00018 4E-09 82.6 15.1 122 293-419 173-294 (395)
168 PF13432 TPR_16: Tetratricopep 97.9 6.8E-05 1.5E-09 63.3 8.8 59 363-422 2-60 (65)
169 PRK10803 tol-pal system protei 97.9 0.00024 5.3E-09 77.6 15.3 94 371-469 156-252 (263)
170 PF09976 TPR_21: Tetratricopep 97.9 0.00062 1.4E-08 67.8 17.0 125 40-172 15-145 (145)
171 PF13414 TPR_11: TPR repeat; P 97.9 7.8E-05 1.7E-09 63.7 8.9 67 36-104 2-69 (69)
172 COG0457 NrfG FOG: TPR repeat [ 97.9 0.0032 6.8E-08 65.5 23.1 201 290-502 60-267 (291)
173 KOG3598 Thyroid hormone recept 97.9 5.1E-05 1.1E-09 93.5 10.0 9 124-132 968-976 (2220)
174 PF12895 Apc3: Anaphase-promot 97.8 4.4E-05 9.6E-10 68.2 7.3 79 303-383 3-83 (84)
175 PF14559 TPR_19: Tetratricopep 97.8 6.1E-05 1.3E-09 64.1 7.5 63 53-115 5-67 (68)
176 COG4700 Uncharacterized protei 97.8 0.0035 7.5E-08 62.6 20.0 134 361-500 92-226 (251)
177 PF08311 Mad3_BUB1_I: Mad3/BUB 97.8 0.00039 8.4E-09 67.2 13.5 108 56-172 2-126 (126)
178 PF12895 Apc3: Anaphase-promot 97.8 6.3E-05 1.4E-09 67.2 7.5 81 371-460 2-84 (84)
179 PF12688 TPR_5: Tetratrico pep 97.8 0.00048 1E-08 65.7 13.4 98 358-462 1-103 (120)
180 KOG0543 FKBP-type peptidyl-pro 97.8 0.00028 6E-09 78.8 13.0 129 365-502 215-357 (397)
181 PRK10803 tol-pal system protei 97.7 0.00061 1.3E-08 74.6 15.6 99 322-422 141-246 (263)
182 KOG3785 Uncharacterized conser 97.7 0.0019 4.2E-08 70.0 18.3 168 284-470 54-221 (557)
183 PF12688 TPR_5: Tetratrico pep 97.7 0.0008 1.7E-08 64.2 14.0 95 291-386 3-103 (120)
184 KOG3616 Selective LIM binding 97.7 0.04 8.7E-07 64.9 29.7 43 53-96 458-500 (1636)
185 PF08311 Mad3_BUB1_I: Mad3/BUB 97.7 0.00063 1.4E-08 65.7 13.3 117 307-461 3-126 (126)
186 PRK15331 chaperone protein Sic 97.7 0.00094 2E-08 66.3 14.5 98 363-469 42-139 (165)
187 PF13525 YfiO: Outer membrane 97.7 0.0018 4E-08 68.4 17.5 171 289-485 5-195 (203)
188 PRK10866 outer membrane biogen 97.7 0.004 8.8E-08 67.6 20.4 179 289-493 32-237 (243)
189 COG3898 Uncharacterized membra 97.6 0.18 4E-06 56.1 31.6 150 303-463 243-392 (531)
190 KOG0985 Vesicle coat protein c 97.6 0.34 7.4E-06 59.7 35.9 270 253-535 1060-1374(1666)
191 KOG3081 Vesicle coat complex C 97.6 0.024 5.1E-07 60.2 23.2 183 287-486 70-259 (299)
192 PF13371 TPR_9: Tetratricopept 97.6 0.00038 8.2E-09 60.1 8.5 65 401-472 3-67 (73)
193 PF13371 TPR_9: Tetratricopept 97.5 0.00049 1.1E-08 59.4 8.6 60 53-112 9-68 (73)
194 KOG1941 Acetylcholine receptor 97.5 0.027 5.9E-07 61.7 23.3 173 291-464 85-276 (518)
195 KOG1130 Predicted G-alpha GTPa 97.5 0.002 4.4E-08 71.2 14.8 139 324-464 136-305 (639)
196 PRK15331 chaperone protein Sic 97.5 0.0025 5.3E-08 63.4 13.6 102 284-386 32-133 (165)
197 KOG4340 Uncharacterized conser 97.5 0.24 5.1E-06 53.3 30.0 66 53-118 24-89 (459)
198 PF04733 Coatomer_E: Coatomer 97.4 0.0014 2.9E-08 73.1 12.8 158 298-469 111-271 (290)
199 PF02259 FAT: FAT domain; Int 97.4 0.15 3.3E-06 58.5 30.5 121 285-406 142-305 (352)
200 COG4700 Uncharacterized protei 97.4 0.017 3.6E-07 57.9 18.6 132 326-466 92-229 (251)
201 COG3898 Uncharacterized membra 97.4 0.098 2.1E-06 58.2 26.2 220 301-545 166-393 (531)
202 PF13525 YfiO: Outer membrane 97.4 0.013 2.8E-07 62.0 19.4 175 253-455 5-199 (203)
203 PF13424 TPR_12: Tetratricopep 97.4 0.0006 1.3E-08 59.8 7.6 74 390-464 2-76 (78)
204 PF13428 TPR_14: Tetratricopep 97.4 0.00032 6.9E-09 54.2 5.0 43 433-476 1-43 (44)
205 KOG0890 Protein kinase of the 97.4 0.6 1.3E-05 63.1 36.8 136 288-426 1628-1788(2382)
206 KOG4340 Uncharacterized conser 97.3 0.35 7.5E-06 52.1 29.8 142 22-175 29-174 (459)
207 COG4785 NlpI Lipoprotein NlpI, 97.3 0.019 4.1E-07 58.9 17.7 201 304-544 61-266 (297)
208 smart00777 Mad3_BUB1_I Mad3/BU 97.3 0.0024 5.3E-08 61.0 10.9 104 58-170 4-124 (125)
209 PF13428 TPR_14: Tetratricopep 97.3 0.00069 1.5E-08 52.3 5.8 42 74-115 2-43 (44)
210 PF13281 DUF4071: Domain of un 97.2 0.11 2.4E-06 59.1 25.5 175 290-467 142-338 (374)
211 smart00386 HAT HAT (Half-A-TPR 97.2 0.00055 1.2E-08 48.7 4.6 31 88-118 2-32 (33)
212 KOG4648 Uncharacterized conser 97.2 0.0011 2.5E-08 71.5 8.7 104 367-478 106-209 (536)
213 PLN03098 LPA1 LOW PSII ACCUMUL 97.2 0.012 2.5E-07 67.7 17.3 70 283-352 69-141 (453)
214 PF04184 ST7: ST7 protein; In 97.2 0.011 2.5E-07 67.7 16.4 164 302-472 181-384 (539)
215 KOG1586 Protein required for f 97.1 0.0089 1.9E-07 61.9 13.9 148 303-468 28-188 (288)
216 KOG1586 Protein required for f 97.1 0.17 3.6E-06 52.8 22.8 138 328-467 79-228 (288)
217 smart00777 Mad3_BUB1_I Mad3/BU 97.1 0.0031 6.6E-08 60.3 9.7 106 267-383 5-124 (125)
218 PRK10866 outer membrane biogen 97.1 0.025 5.4E-07 61.4 18.1 155 361-550 35-210 (243)
219 KOG4555 TPR repeat-containing 97.1 0.004 8.6E-08 58.6 9.7 93 368-464 53-145 (175)
220 KOG1585 Protein required for f 97.1 0.05 1.1E-06 56.9 18.3 148 300-478 82-238 (308)
221 PLN03098 LPA1 LOW PSII ACCUMUL 97.0 0.046 9.9E-07 63.0 19.9 68 318-386 70-140 (453)
222 KOG4234 TPR repeat-containing 97.0 0.011 2.3E-07 59.8 13.0 57 365-422 141-197 (271)
223 KOG4234 TPR repeat-containing 97.0 0.011 2.3E-07 59.9 12.5 107 293-401 99-210 (271)
224 PF06552 TOM20_plant: Plant sp 97.0 0.0047 1E-07 62.0 9.9 93 374-474 7-120 (186)
225 COG1729 Uncharacterized protei 97.0 0.015 3.1E-07 62.5 14.1 97 369-470 152-251 (262)
226 COG1729 Uncharacterized protei 96.9 0.014 3.1E-07 62.6 13.9 108 326-439 144-255 (262)
227 KOG0890 Protein kinase of the 96.9 2.3 5E-05 57.8 35.9 221 286-521 1667-1934(2382)
228 smart00386 HAT HAT (Half-A-TPR 96.9 0.0014 3E-08 46.6 4.2 32 448-479 1-32 (33)
229 KOG4555 TPR repeat-containing 96.9 0.009 2E-07 56.2 10.4 93 298-422 52-144 (175)
230 PF02259 FAT: FAT domain; Int 96.9 0.035 7.6E-07 63.8 18.2 120 319-444 142-303 (352)
231 PF13424 TPR_12: Tetratricopep 96.9 0.0039 8.5E-08 54.6 7.6 64 359-422 6-75 (78)
232 KOG2300 Uncharacterized conser 96.9 1.4 3E-05 50.8 41.1 187 296-483 330-540 (629)
233 KOG1585 Protein required for f 96.8 0.15 3.2E-06 53.6 19.6 123 405-538 122-250 (308)
234 KOG4648 Uncharacterized conser 96.7 0.008 1.7E-07 65.2 9.3 101 292-394 100-200 (536)
235 KOG1130 Predicted G-alpha GTPa 96.6 0.083 1.8E-06 58.9 17.1 120 363-483 240-370 (639)
236 PF03704 BTAD: Bacterial trans 96.6 0.047 1E-06 54.2 14.5 64 74-138 63-126 (146)
237 PF13512 TPR_18: Tetratricopep 96.6 0.041 8.9E-07 53.6 13.2 104 361-469 13-134 (142)
238 PF02184 HAT: HAT (Half-A-TPR) 96.6 0.0025 5.5E-08 44.6 3.4 28 55-83 3-30 (32)
239 KOG2796 Uncharacterized conser 96.5 0.96 2.1E-05 48.1 23.2 132 328-466 182-318 (366)
240 KOG1920 IkappaB kinase complex 96.5 2.6 5.7E-05 53.6 30.8 142 291-485 910-1056(1265)
241 KOG2796 Uncharacterized conser 96.5 0.16 3.4E-06 53.8 17.2 120 302-422 190-315 (366)
242 PF04184 ST7: ST7 protein; In 96.5 0.17 3.7E-06 58.5 19.0 129 333-471 178-333 (539)
243 COG4785 NlpI Lipoprotein NlpI, 96.4 0.11 2.5E-06 53.4 15.2 190 290-499 66-265 (297)
244 PF13512 TPR_18: Tetratricopep 96.4 0.045 9.8E-07 53.3 11.9 73 393-469 10-82 (142)
245 KOG1941 Acetylcholine receptor 96.3 0.12 2.6E-06 57.0 15.8 190 296-486 129-349 (518)
246 KOG0530 Protein farnesyltransf 96.3 0.52 1.1E-05 50.1 19.9 207 301-520 55-269 (318)
247 PF02184 HAT: HAT (Half-A-TPR) 96.3 0.005 1.1E-07 43.1 3.5 29 88-117 2-30 (32)
248 KOG0985 Vesicle coat protein c 96.3 4.7 0.0001 50.4 31.0 27 145-171 1104-1130(1666)
249 COG3118 Thioredoxin domain-con 96.3 0.32 7E-06 52.9 18.7 150 327-485 138-289 (304)
250 PF13281 DUF4071: Domain of un 96.3 0.35 7.5E-06 55.2 20.0 85 321-405 139-229 (374)
251 PF13431 TPR_17: Tetratricopep 96.2 0.0034 7.4E-08 45.4 2.5 33 311-343 1-33 (34)
252 PF03704 BTAD: Bacterial trans 96.2 0.31 6.8E-06 48.2 17.6 107 300-426 17-129 (146)
253 KOG0889 Histone acetyltransfer 96.1 12 0.00026 53.3 36.2 241 284-548 2686-2958(3550)
254 COG4105 ComL DNA uptake lipopr 96.0 0.84 1.8E-05 48.9 20.0 185 289-496 34-232 (254)
255 KOG3081 Vesicle coat complex C 96.0 1.6 3.4E-05 46.9 21.6 162 291-468 109-276 (299)
256 KOG2610 Uncharacterized conser 96.0 0.47 1E-05 52.0 17.8 157 301-461 115-274 (491)
257 KOG4642 Chaperone-dependent E3 95.9 0.052 1.1E-06 56.6 10.2 98 372-477 24-126 (284)
258 PF07719 TPR_2: Tetratricopept 95.9 0.017 3.8E-07 41.3 4.8 34 433-467 1-34 (34)
259 PF13431 TPR_17: Tetratricopep 95.6 0.012 2.6E-07 42.5 3.2 34 415-455 1-34 (34)
260 PF06552 TOM20_plant: Plant sp 95.6 0.063 1.4E-06 54.1 8.9 61 305-366 7-77 (186)
261 COG4105 ComL DNA uptake lipopr 95.5 0.66 1.4E-05 49.7 16.9 151 393-549 34-201 (254)
262 PF10300 DUF3808: Protein of u 95.5 0.65 1.4E-05 55.6 19.1 152 302-462 201-375 (468)
263 KOG4642 Chaperone-dependent E3 95.5 0.16 3.5E-06 53.1 11.7 100 53-153 24-125 (284)
264 KOG3824 Huntingtin interacting 95.4 0.58 1.3E-05 50.6 15.8 64 370-440 128-191 (472)
265 PF00515 TPR_1: Tetratricopept 95.3 0.036 7.8E-07 39.8 4.8 34 433-467 1-34 (34)
266 PF04910 Tcf25: Transcriptiona 95.2 1.2 2.6E-05 51.3 19.2 159 304-469 25-228 (360)
267 KOG0889 Histone acetyltransfer 95.2 25 0.00055 50.3 35.6 128 359-496 2813-2950(3550)
268 PF08631 SPO22: Meiosis protei 94.9 7.9 0.00017 43.0 26.4 231 301-543 5-274 (278)
269 KOG0376 Serine-threonine phosp 94.8 0.036 7.7E-07 63.6 5.3 100 370-477 16-115 (476)
270 KOG2053 Mitochondrial inherita 94.3 19 0.00042 44.9 47.2 157 367-540 445-604 (932)
271 KOG2610 Uncharacterized conser 94.1 2.2 4.9E-05 46.9 16.4 121 332-460 112-235 (491)
272 KOG2471 TPR repeat-containing 94.1 0.4 8.6E-06 54.9 11.2 124 356-480 238-381 (696)
273 PF10300 DUF3808: Protein of u 94.0 1.1 2.4E-05 53.6 15.7 120 302-424 246-378 (468)
274 KOG1538 Uncharacterized conser 94.0 1.3 2.8E-05 52.4 15.2 51 331-385 781-831 (1081)
275 KOG0530 Protein farnesyltransf 93.9 3.3 7.1E-05 44.3 16.8 164 265-444 61-232 (318)
276 PF07719 TPR_2: Tetratricopept 93.8 0.15 3.3E-06 36.3 5.1 33 74-106 2-34 (34)
277 PF13181 TPR_8: Tetratricopept 93.7 0.1 2.2E-06 37.3 4.0 32 434-466 2-33 (34)
278 COG2976 Uncharacterized protei 93.7 7.3 0.00016 40.1 18.3 93 325-422 91-188 (207)
279 KOG0545 Aryl-hydrocarbon recep 93.7 0.82 1.8E-05 48.1 11.8 73 393-472 230-302 (329)
280 PF10602 RPN7: 26S proteasome 93.7 2.3 5.1E-05 43.7 15.4 97 289-385 36-140 (177)
281 COG3118 Thioredoxin domain-con 93.7 1.6 3.5E-05 47.6 14.5 118 301-422 146-265 (304)
282 KOG0545 Aryl-hydrocarbon recep 93.6 1.7 3.7E-05 45.9 13.9 70 360-436 232-301 (329)
283 COG2976 Uncharacterized protei 93.6 1.7 3.7E-05 44.6 13.6 99 362-468 93-193 (207)
284 KOG3824 Huntingtin interacting 93.4 0.22 4.8E-06 53.6 7.3 61 403-470 126-186 (472)
285 PF13174 TPR_6: Tetratricopept 93.1 0.15 3.2E-06 36.0 3.9 32 435-467 2-33 (33)
286 KOG0551 Hsp90 co-chaperone CNS 93.0 1.4 3E-05 48.6 12.7 97 365-468 88-187 (390)
287 PF10602 RPN7: 26S proteasome 92.8 1 2.2E-05 46.4 11.1 106 359-465 37-144 (177)
288 PF00515 TPR_1: Tetratricopept 92.3 0.34 7.3E-06 34.6 5.0 29 394-422 2-30 (34)
289 KOG1308 Hsp70-interacting prot 92.3 0.12 2.6E-06 56.9 3.7 118 301-422 126-244 (377)
290 KOG1308 Hsp70-interacting prot 92.2 0.12 2.7E-06 56.8 3.6 96 370-473 126-222 (377)
291 PF07079 DUF1347: Protein of u 92.1 28 0.0006 40.4 33.4 135 327-476 383-533 (549)
292 COG1747 Uncharacterized N-term 92.0 10 0.00022 44.3 18.4 130 291-422 101-234 (711)
293 PF08631 SPO22: Meiosis protei 91.9 7.5 0.00016 43.2 17.6 103 393-499 35-149 (278)
294 PF11498 Activator_LAG-3: Tran 91.9 0.047 1E-06 59.0 0.0 9 767-775 268-276 (468)
295 KOG2581 26S proteasome regulat 91.8 24 0.00052 40.3 20.5 129 359-496 170-311 (493)
296 KOG0376 Serine-threonine phosp 91.7 0.28 6E-06 56.6 5.8 93 301-395 16-108 (476)
297 KOG2066 Vacuolar assembly/sort 91.3 40 0.00086 41.7 23.1 51 80-131 363-415 (846)
298 PF10345 Cohesin_load: Cohesin 90.9 51 0.0011 41.1 46.3 115 57-175 39-169 (608)
299 PRK12798 chemotaxis protein; R 90.6 29 0.00063 40.1 20.2 123 407-547 162-289 (421)
300 PF09986 DUF2225: Uncharacteri 90.5 2.3 5E-05 45.1 11.1 73 392-465 117-196 (214)
301 PF14561 TPR_20: Tetratricopep 90.3 1.9 4.2E-05 38.9 8.9 49 22-72 7-55 (90)
302 KOG1550 Extracellular protein 90.2 11 0.00024 46.3 18.3 147 305-464 228-394 (552)
303 PF00244 14-3-3: 14-3-3 protei 90.1 7.9 0.00017 41.8 15.0 54 409-462 142-197 (236)
304 PF13174 TPR_6: Tetratricopept 90.0 0.7 1.5E-05 32.4 4.7 32 39-72 2-33 (33)
305 PF13181 TPR_8: Tetratricopept 89.6 0.77 1.7E-05 32.6 4.7 31 74-104 2-32 (34)
306 KOG1464 COP9 signalosome, subu 89.3 18 0.00039 38.8 16.1 192 289-482 65-286 (440)
307 PF13176 TPR_7: Tetratricopept 89.3 0.75 1.6E-05 33.6 4.5 28 395-422 1-28 (36)
308 KOG4507 Uncharacterized conser 89.3 1.7 3.7E-05 51.0 9.3 105 365-477 613-719 (886)
309 COG1747 Uncharacterized N-term 89.2 50 0.0011 38.9 20.5 166 304-480 81-251 (711)
310 PF04053 Coatomer_WDAD: Coatom 89.2 7.1 0.00015 46.3 14.8 132 302-468 274-407 (443)
311 PF04910 Tcf25: Transcriptiona 89.1 14 0.00031 42.6 17.0 155 389-548 36-226 (360)
312 KOG2041 WD40 repeat protein [G 88.4 69 0.0015 39.1 22.8 39 133-172 681-719 (1189)
313 PF09986 DUF2225: Uncharacteri 88.3 4.9 0.00011 42.7 11.5 47 376-422 143-194 (214)
314 KOG2422 Uncharacterized conser 88.1 15 0.00032 43.7 15.8 99 365-466 349-451 (665)
315 COG3629 DnrI DNA-binding trans 87.9 5.6 0.00012 43.7 11.9 63 74-137 154-216 (280)
316 KOG1550 Extracellular protein 87.9 21 0.00045 43.9 18.3 144 304-461 264-424 (552)
317 PF12968 DUF3856: Domain of Un 87.7 25 0.00055 33.2 15.2 88 337-425 23-132 (144)
318 KOG1538 Uncharacterized conser 87.5 30 0.00064 41.6 17.7 33 510-543 800-832 (1081)
319 smart00028 TPR Tetratricopepti 87.3 0.8 1.7E-05 30.9 3.5 32 434-466 2-33 (34)
320 PF13176 TPR_7: Tetratricopept 87.3 0.98 2.1E-05 32.9 4.0 28 435-463 1-28 (36)
321 KOG0551 Hsp90 co-chaperone CNS 86.7 5.9 0.00013 43.9 11.0 61 361-422 122-182 (390)
322 KOG2422 Uncharacterized conser 86.1 26 0.00057 41.7 16.4 177 304-502 253-450 (665)
323 KOG4507 Uncharacterized conser 86.0 7.1 0.00015 46.1 11.7 117 305-422 195-312 (886)
324 PF04053 Coatomer_WDAD: Coatom 85.9 7.6 0.00017 46.0 12.6 132 291-460 297-428 (443)
325 KOG1464 COP9 signalosome, subu 85.9 28 0.0006 37.5 15.0 90 407-500 119-220 (440)
326 KOG0529 Protein geranylgeranyl 85.7 8.6 0.00019 43.9 12.0 129 22-151 94-235 (421)
327 KOG1920 IkappaB kinase complex 85.2 28 0.0006 45.0 17.1 77 339-419 889-965 (1265)
328 KOG1972 Uncharacterized conser 85.2 1.1E+02 0.0024 38.2 26.5 150 284-443 717-880 (913)
329 COG4976 Predicted methyltransf 85.1 1.1 2.3E-05 46.9 4.3 53 300-352 6-58 (287)
330 COG2909 MalT ATP-dependent tra 84.9 56 0.0012 41.1 19.2 117 356-474 413-541 (894)
331 KOG2471 TPR repeat-containing 84.3 3.8 8.2E-05 47.3 8.4 46 392-443 334-379 (696)
332 PRK10941 hypothetical protein; 84.1 9.5 0.00021 42.0 11.4 64 400-470 188-251 (269)
333 COG4976 Predicted methyltransf 84.1 1.3 2.7E-05 46.4 4.2 56 366-422 3-58 (287)
334 KOG2041 WD40 repeat protein [G 83.9 1.1E+02 0.0025 37.3 30.8 25 73-97 692-716 (1189)
335 PF09613 HrpB1_HrpK: Bacterial 83.8 42 0.00092 33.7 14.6 57 333-391 20-76 (160)
336 PF09670 Cas_Cas02710: CRISPR- 83.8 78 0.0017 36.9 19.4 129 292-423 135-271 (379)
337 PF11207 DUF2989: Protein of u 83.5 30 0.00066 36.0 13.9 78 373-454 121-198 (203)
338 COG3629 DnrI DNA-binding trans 83.3 9.3 0.0002 42.1 10.8 50 53-102 167-216 (280)
339 COG3947 Response regulator con 83.1 8.5 0.00019 41.9 10.0 54 79-133 285-338 (361)
340 PF04190 DUF410: Protein of un 82.7 81 0.0018 34.6 18.7 100 412-544 69-170 (260)
341 PF12862 Apc5: Anaphase-promot 82.2 7.2 0.00016 35.4 8.1 60 405-465 10-72 (94)
342 PF12862 Apc5: Anaphase-promot 81.5 12 0.00026 34.0 9.3 34 393-426 41-74 (94)
343 PF15297 CKAP2_C: Cytoskeleton 81.3 9.3 0.0002 42.9 9.9 86 74-174 84-169 (353)
344 COG0790 FOG: TPR repeat, SEL1 81.3 60 0.0013 36.0 17.0 150 303-465 55-222 (292)
345 KOG3807 Predicted membrane pro 80.8 85 0.0018 34.9 16.5 82 304-387 199-304 (556)
346 PF10345 Cohesin_load: Cohesin 80.8 1.6E+02 0.0034 36.7 41.8 112 23-138 41-169 (608)
347 PF09613 HrpB1_HrpK: Bacterial 80.7 67 0.0014 32.3 14.7 65 396-467 13-77 (160)
348 KOG4318 Bicoid mRNA stability 80.6 1.7E+02 0.0037 37.1 26.5 96 74-171 492-591 (1088)
349 PRK15180 Vi polysaccharide bio 80.2 17 0.00036 42.1 11.5 133 334-475 300-432 (831)
350 TIGR03362 VI_chp_7 type VI sec 79.5 1.1E+02 0.0024 34.3 18.5 139 284-424 95-281 (301)
351 smart00028 TPR Tetratricopepti 79.5 3.2 6.9E-05 27.7 3.9 30 75-104 3-32 (34)
352 PF14561 TPR_20: Tetratricopep 79.3 19 0.00041 32.5 9.6 65 60-140 9-73 (90)
353 COG5187 RPN7 26S proteasome re 78.4 73 0.0016 34.9 14.9 74 410-484 92-168 (412)
354 KOG0276 Vesicle coat complex C 78.3 36 0.00079 40.8 13.7 25 361-385 669-693 (794)
355 KOG1166 Mitotic checkpoint ser 78.2 26 0.00057 45.2 13.8 69 408-481 93-162 (974)
356 PF15297 CKAP2_C: Cytoskeleton 78.2 9.1 0.0002 43.0 8.6 85 323-422 83-169 (353)
357 PF11207 DUF2989: Protein of u 77.8 12 0.00025 39.0 8.7 80 332-412 115-197 (203)
358 PF12968 DUF3856: Domain of Un 77.7 28 0.0006 33.0 10.1 85 301-385 21-127 (144)
359 COG2909 MalT ATP-dependent tra 76.9 2.2E+02 0.0048 36.2 25.1 231 301-540 427-684 (894)
360 PF03154 Atrophin-1: Atrophin- 76.3 1.1E+02 0.0025 38.9 17.9 95 624-725 35-136 (982)
361 COG3914 Spy Predicted O-linked 75.9 1.3E+02 0.0029 36.2 17.5 38 439-477 148-185 (620)
362 PRK10941 hypothetical protein; 75.9 16 0.00036 40.1 9.9 56 53-108 195-250 (269)
363 COG5187 RPN7 26S proteasome re 75.3 1.1E+02 0.0025 33.5 15.3 143 319-466 69-224 (412)
364 PF14853 Fis1_TPR_C: Fis1 C-te 74.8 15 0.00033 29.5 6.8 33 438-471 6-38 (53)
365 KOG2300 Uncharacterized conser 74.1 1.9E+02 0.0041 34.2 40.4 465 38-540 8-552 (629)
366 KOG4422 Uncharacterized conser 72.4 2E+02 0.0042 33.5 20.1 142 393-540 273-423 (625)
367 PF04781 DUF627: Protein of un 71.8 48 0.001 31.1 10.2 44 412-462 63-106 (111)
368 COG5159 RPN6 26S proteasome re 71.5 1.6E+02 0.0035 32.3 20.5 160 301-461 15-192 (421)
369 TIGR02561 HrpB1_HrpK type III 70.8 34 0.00073 33.9 9.4 49 336-385 23-71 (153)
370 KOG2034 Vacuolar sorting prote 69.7 90 0.002 39.4 14.8 86 323-424 362-447 (911)
371 PF13374 TPR_10: Tetratricopep 69.2 9.5 0.00021 28.1 4.4 29 434-463 3-31 (42)
372 COG5159 RPN6 26S proteasome re 69.1 1.7E+02 0.0037 32.1 14.9 102 362-465 129-237 (421)
373 KOG3807 Predicted membrane pro 68.4 2E+02 0.0044 32.1 16.8 46 338-386 199-244 (556)
374 PF13374 TPR_10: Tetratricopep 67.0 13 0.00028 27.3 4.8 30 394-423 3-32 (42)
375 KOG4014 Uncharacterized conser 67.0 54 0.0012 33.5 10.1 100 357-466 33-144 (248)
376 KOG1166 Mitotic checkpoint ser 66.9 21 0.00045 46.1 9.2 115 288-406 33-162 (974)
377 KOG0686 COP9 signalosome, subu 66.4 1.1E+02 0.0024 35.2 13.5 62 434-499 151-215 (466)
378 KOG0687 26S proteasome regulat 65.1 1.5E+02 0.0032 33.3 13.8 100 359-466 105-213 (393)
379 KOG1839 Uncharacterized protei 63.7 90 0.002 41.1 13.8 127 335-463 944-1086(1236)
380 TIGR02996 rpt_mate_G_obs repea 63.6 12 0.00025 28.4 3.6 33 310-342 3-35 (42)
381 PF04781 DUF627: Protein of un 63.6 97 0.0021 29.1 10.5 98 301-421 8-106 (111)
382 PF14929 TAF1_subA: TAF RNA Po 63.1 67 0.0015 39.0 12.0 82 53-138 358-442 (547)
383 KOG2114 Vacuolar assembly/sort 62.9 1.4E+02 0.0029 37.7 14.3 33 359-391 369-401 (933)
384 smart00101 14_3_3 14-3-3 homol 61.7 2.4E+02 0.0052 30.6 17.0 55 408-462 143-199 (244)
385 KOG1839 Uncharacterized protei 58.9 1E+02 0.0022 40.6 13.1 153 307-460 956-1125(1236)
386 KOG3783 Uncharacterized conser 58.2 4E+02 0.0087 32.1 21.5 131 292-424 234-377 (546)
387 TIGR02996 rpt_mate_G_obs repea 58.1 23 0.00049 26.9 4.3 25 64-88 7-31 (42)
388 PF11817 Foie-gras_1: Foie gra 58.1 47 0.001 36.1 9.0 59 406-465 151-209 (247)
389 KOG0686 COP9 signalosome, subu 58.0 3.6E+02 0.0077 31.4 16.8 100 360-462 152-257 (466)
390 PF07721 TPR_4: Tetratricopept 57.9 12 0.00025 25.0 2.7 25 434-459 2-26 (26)
391 COG0790 FOG: TPR repeat, SEL1 57.4 3E+02 0.0065 30.3 20.7 144 303-464 91-267 (292)
392 KOG4592 Uncharacterized conser 57.0 50 0.0011 39.6 9.1 18 783-800 55-72 (728)
393 PF12739 TRAPPC-Trs85: ER-Golg 56.8 2.8E+02 0.0061 32.7 15.8 161 290-465 209-401 (414)
394 PF05053 Menin: Menin; InterP 56.6 1.3E+02 0.0028 36.2 12.3 84 356-439 275-364 (618)
395 COG3914 Spy Predicted O-linked 56.3 2E+02 0.0044 34.8 13.9 116 284-401 60-184 (620)
396 KOG0276 Vesicle coat complex C 55.9 2.6E+02 0.0057 33.9 14.6 82 323-422 614-695 (794)
397 COG3947 Response regulator con 55.8 35 0.00077 37.4 7.1 60 363-423 284-343 (361)
398 KOG1463 26S proteasome regulat 55.5 1.9E+02 0.0041 32.7 12.6 177 287-464 46-239 (411)
399 PF07720 TPR_3: Tetratricopept 55.2 33 0.00072 25.1 4.8 32 434-466 2-35 (36)
400 PF07721 TPR_4: Tetratricopept 54.3 20 0.00043 23.9 3.3 19 363-381 6-24 (26)
401 PF14853 Fis1_TPR_C: Fis1 C-te 54.2 52 0.0011 26.5 6.2 25 368-393 11-35 (53)
402 smart00299 CLH Clathrin heavy 53.9 1.2E+02 0.0027 29.3 10.5 34 53-86 21-54 (140)
403 PRK13184 pknD serine/threonine 53.5 43 0.00093 43.4 8.7 102 366-470 483-588 (932)
404 KOG1310 WD40 repeat protein [G 53.1 65 0.0014 38.1 9.1 46 376-422 429-474 (758)
405 KOG2066 Vacuolar assembly/sort 52.5 5.8E+02 0.013 32.2 29.3 77 29-116 354-432 (846)
406 KOG1811 Predicted Zn2+-binding 51.3 2.8E+02 0.006 33.5 13.7 72 429-502 583-655 (1141)
407 cd02680 MIT_calpain7_2 MIT: do 51.2 22 0.00047 30.9 3.9 19 446-464 18-36 (75)
408 KOG2908 26S proteasome regulat 51.0 4.2E+02 0.009 30.1 17.3 92 368-462 85-182 (380)
409 KOG4521 Nuclear pore complex, 50.4 7.4E+02 0.016 32.8 18.9 50 451-502 1083-1134(1480)
410 KOG1310 WD40 repeat protein [G 50.3 50 0.0011 39.0 7.6 88 374-469 390-480 (758)
411 KOG4279 Serine/threonine prote 50.0 1.2E+02 0.0026 37.4 10.8 174 291-467 203-399 (1226)
412 PF12144 Med12-PQL: Eukaryotic 49.7 18 0.0004 36.8 3.6 65 828-892 109-175 (204)
413 PF09670 Cas_Cas02710: CRISPR- 49.4 2.8E+02 0.006 32.3 14.0 57 329-386 137-197 (379)
414 KOG2114 Vacuolar assembly/sort 49.2 1.7E+02 0.0036 36.9 12.1 53 369-423 345-398 (933)
415 COG4259 Uncharacterized protei 48.4 1.3E+02 0.0029 27.5 8.3 68 409-482 49-116 (121)
416 TIGR02561 HrpB1_HrpK type III 47.6 2.9E+02 0.0063 27.6 11.3 49 371-420 23-71 (153)
417 PF12854 PPR_1: PPR repeat 47.1 36 0.00077 24.4 3.9 26 393-418 7-32 (34)
418 PHA02537 M terminase endonucle 46.1 2.6E+02 0.0057 30.0 11.8 98 446-550 95-213 (230)
419 KOG1972 Uncharacterized conser 45.6 7.4E+02 0.016 31.4 23.7 96 447-548 743-869 (913)
420 PF13041 PPR_2: PPR repeat fam 44.2 91 0.002 24.1 6.3 28 75-102 5-32 (50)
421 TIGR03504 FimV_Cterm FimV C-te 43.8 35 0.00076 26.3 3.6 25 437-462 3-27 (44)
422 KOG1811 Predicted Zn2+-binding 43.6 2.7E+02 0.0057 33.6 12.1 70 391-466 585-656 (1141)
423 PF15015 NYD-SP12_N: Spermatog 42.7 1.9E+02 0.0041 33.5 10.5 49 365-414 235-283 (569)
424 KOG2758 Translation initiation 42.6 5.4E+02 0.012 28.9 26.8 182 309-498 115-318 (432)
425 KOG0687 26S proteasome regulat 42.4 5.5E+02 0.012 29.0 15.9 52 431-483 102-156 (393)
426 PRK15490 Vi polysaccharide bio 42.2 1.2E+02 0.0027 37.0 9.6 76 373-458 23-98 (578)
427 PF01535 PPR: PPR repeat; Int 41.1 38 0.00082 22.8 3.3 27 395-421 2-28 (31)
428 PF10516 SHNi-TPR: SHNi-TPR; 40.6 48 0.001 24.7 3.7 29 394-422 2-30 (38)
429 KOG4369 RTK signaling protein 40.0 25 0.00053 44.9 3.4 10 790-799 1504-1513(2131)
430 PF00244 14-3-3: 14-3-3 protei 39.1 5.2E+02 0.011 27.8 15.7 48 305-352 149-198 (236)
431 PF11817 Foie-gras_1: Foie gra 38.9 2.1E+02 0.0045 31.1 10.2 22 400-421 185-206 (247)
432 PF01535 PPR: PPR repeat; Int 38.7 45 0.00097 22.5 3.3 26 76-101 3-28 (31)
433 KOG4318 Bicoid mRNA stability 38.3 1E+03 0.022 30.8 32.6 98 79-178 713-813 (1088)
434 TIGR03504 FimV_Cterm FimV C-te 38.0 50 0.0011 25.5 3.6 25 327-351 3-27 (44)
435 KOG1938 Protein with predicted 37.8 4.6E+02 0.0099 33.8 13.6 62 403-466 326-387 (960)
436 KOG2581 26S proteasome regulat 37.8 7.2E+02 0.016 29.0 14.4 121 393-521 169-296 (493)
437 COG4649 Uncharacterized protei 37.6 4.7E+02 0.01 26.9 13.1 130 327-462 62-195 (221)
438 COG2178 Predicted RNA-binding 37.4 4.1E+02 0.0089 27.7 11.0 29 396-424 32-60 (204)
439 PF12854 PPR_1: PPR repeat 37.4 55 0.0012 23.4 3.6 25 74-98 8-32 (34)
440 PF09205 DUF1955: Domain of un 37.0 1.6E+02 0.0035 28.7 7.6 56 296-351 93-148 (161)
441 PRK15338 type III secretion sy 36.6 7.2E+02 0.016 28.7 22.3 151 308-465 108-271 (372)
442 PF10579 Rapsyn_N: Rapsyn N-te 36.3 1.3E+02 0.0028 26.4 6.3 42 440-482 13-54 (80)
443 PF05053 Menin: Menin; InterP 36.2 2E+02 0.0043 34.7 9.8 86 391-478 275-368 (618)
444 cd02684 MIT_2 MIT: domain cont 35.8 54 0.0012 28.5 4.0 17 446-462 18-34 (75)
445 PRK15490 Vi polysaccharide bio 35.5 1.2E+02 0.0027 36.9 8.3 79 405-495 20-98 (578)
446 COG5290 IkappaB kinase complex 35.1 1E+03 0.023 30.1 17.3 89 371-461 870-962 (1243)
447 KOG0529 Protein geranylgeranyl 35.0 6.6E+02 0.014 29.3 13.3 129 343-479 95-240 (421)
448 KOG2561 Adaptor protein NUB1, 34.8 2.6E+02 0.0055 32.7 9.9 46 396-441 270-315 (568)
449 PF11846 DUF3366: Domain of un 34.6 1.2E+02 0.0025 31.5 7.1 50 54-104 126-175 (193)
450 PF04190 DUF410: Protein of un 34.3 6.5E+02 0.014 27.5 17.5 68 356-423 88-171 (260)
451 PF13041 PPR_2: PPR repeat fam 34.3 1.8E+02 0.0038 22.5 6.5 30 393-422 3-32 (50)
452 KOG1114 Tripeptidyl peptidase 34.3 1.2E+03 0.025 30.4 16.8 69 408-482 1211-1281(1304)
453 PF13226 DUF4034: Domain of un 34.3 6.6E+02 0.014 27.9 13.0 180 296-478 7-239 (277)
454 KOG4814 Uncharacterized conser 34.2 7.7E+02 0.017 30.4 14.0 73 395-469 357-429 (872)
455 PF14929 TAF1_subA: TAF RNA Po 34.0 9.7E+02 0.021 29.4 29.9 167 306-482 275-469 (547)
456 PF04212 MIT: MIT (microtubule 33.8 2.2E+02 0.0047 24.0 7.4 17 369-385 16-32 (69)
457 PRK15338 type III secretion sy 33.6 4.6E+02 0.0099 30.2 11.8 26 451-476 184-209 (372)
458 PF08626 TRAPPC9-Trs120: Trans 33.3 1.4E+03 0.031 31.1 18.7 91 372-463 359-474 (1185)
459 cd02680 MIT_calpain7_2 MIT: do 33.2 71 0.0015 27.8 4.2 19 85-103 18-36 (75)
460 PF15015 NYD-SP12_N: Spermatog 32.7 4.1E+02 0.0088 31.0 11.0 93 288-381 171-285 (569)
461 PF04212 MIT: MIT (microtubule 32.5 97 0.0021 26.1 5.1 17 446-462 17-33 (69)
462 PF10516 SHNi-TPR: SHNi-TPR; 32.3 68 0.0015 23.9 3.4 29 434-463 2-30 (38)
463 TIGR00756 PPR pentatricopeptid 31.6 86 0.0019 21.4 4.0 27 76-102 3-29 (35)
464 TIGR00756 PPR pentatricopeptid 31.3 85 0.0018 21.5 3.9 27 396-422 3-29 (35)
465 KOG4014 Uncharacterized conser 30.8 6.2E+02 0.013 26.2 18.8 96 284-385 32-139 (248)
466 KOG2908 26S proteasome regulat 30.7 8.5E+02 0.018 27.7 17.5 61 401-462 83-143 (380)
467 KOG3783 Uncharacterized conser 30.5 1E+03 0.023 28.7 27.4 70 396-465 452-522 (546)
468 PF12739 TRAPPC-Trs85: ER-Golg 30.5 9.5E+02 0.021 28.2 18.0 33 515-547 370-402 (414)
469 KOG0307 Vesicle coat complex C 30.4 1.3E+03 0.027 30.5 15.9 24 513-537 664-687 (1049)
470 TIGR02710 CRISPR-associated pr 30.4 8.4E+02 0.018 28.4 13.5 118 300-423 141-276 (380)
471 PF11846 DUF3366: Domain of un 30.1 3.2E+02 0.0069 28.2 9.6 48 410-465 128-175 (193)
472 cd02683 MIT_1 MIT: domain cont 30.0 1.5E+02 0.0033 25.8 5.9 17 369-385 17-33 (77)
473 cd02677 MIT_SNX15 MIT: domain 29.8 3.7E+02 0.0081 23.3 8.2 17 369-385 17-33 (75)
474 KOG0292 Vesicle coat complex C 29.7 1.4E+02 0.0031 37.6 7.4 41 407-462 741-781 (1202)
475 PF10373 EST1_DNA_bind: Est1 D 28.7 1E+02 0.0022 33.7 5.9 62 308-370 1-62 (278)
476 cd02682 MIT_AAA_Arch MIT: doma 28.6 2.4E+02 0.0051 24.6 6.6 64 340-420 4-70 (75)
477 TIGR01987 HI0074 nucleotidyltr 28.6 3.4E+02 0.0074 26.1 8.5 43 93-135 63-108 (123)
478 TIGR02029 AcsF magnesium-proto 27.9 5.4E+02 0.012 28.8 10.7 68 125-192 116-197 (337)
479 PHA02537 M terminase endonucle 27.9 4.2E+02 0.0091 28.5 9.9 24 329-352 89-112 (230)
480 PF10373 EST1_DNA_bind: Est1 D 27.8 2.1E+02 0.0045 31.3 8.2 43 342-385 1-43 (278)
481 COG4455 ImpE Protein of avirul 27.8 7.8E+02 0.017 26.4 12.4 130 400-550 8-140 (273)
482 cd02684 MIT_2 MIT: domain cont 27.5 2E+02 0.0044 24.9 6.2 17 369-385 17-33 (75)
483 cd02683 MIT_1 MIT: domain cont 27.4 95 0.0021 27.1 4.1 17 446-462 18-34 (77)
484 cd02679 MIT_spastin MIT: domai 27.1 83 0.0018 27.7 3.7 14 372-385 22-35 (79)
485 KOG3364 Membrane protein invol 26.9 5.7E+02 0.012 25.2 9.4 68 396-469 35-106 (149)
486 PF07720 TPR_3: Tetratricopept 26.8 2E+02 0.0043 21.1 5.0 20 76-95 4-23 (36)
487 cd02679 MIT_spastin MIT: domai 26.5 1.3E+02 0.0027 26.6 4.7 17 446-462 20-36 (79)
488 CHL00185 ycf59 magnesium-proto 26.4 9.7E+02 0.021 27.0 12.7 155 26-192 28-203 (351)
489 COG2912 Uncharacterized conser 26.3 7.2E+02 0.016 27.4 11.4 60 403-469 191-250 (269)
490 smart00299 CLH Clathrin heavy 26.2 5.9E+02 0.013 24.4 15.0 38 300-337 18-55 (140)
491 KOG4368 Predicted RNA binding 26.0 2.4E+02 0.0051 33.9 8.0 148 799-962 292-439 (757)
492 PF09797 NatB_MDM20: N-acetylt 25.6 4.8E+02 0.011 30.0 11.0 125 23-156 203-328 (365)
493 COG4941 Predicted RNA polymera 25.6 1E+03 0.022 27.1 13.7 147 280-442 255-408 (415)
494 KOG3364 Membrane protein invol 25.0 3.9E+02 0.0085 26.2 8.0 87 23-109 19-107 (149)
495 KOG2062 26S proteasome regulat 24.4 5.4E+02 0.012 32.2 10.8 159 362-543 63-238 (929)
496 PF10579 Rapsyn_N: Rapsyn N-te 24.4 4.8E+02 0.01 23.1 7.7 65 391-462 4-68 (80)
497 cd02681 MIT_calpain7_1 MIT: do 24.2 4.8E+02 0.01 22.7 8.0 57 340-419 4-64 (76)
498 cd02678 MIT_VPS4 MIT: domain c 23.7 1.2E+02 0.0026 26.2 4.1 34 409-464 3-36 (75)
499 cd00280 TRFH Telomeric Repeat 23.6 5.1E+02 0.011 26.8 8.9 75 55-131 85-167 (200)
500 PF10255 Paf67: RNA polymerase 23.0 3.1E+02 0.0067 32.1 8.4 136 395-542 124-268 (404)
No 1
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=100.00 E-value=6.9e-52 Score=461.13 Aligned_cols=490 Identities=16% Similarity=0.218 Sum_probs=416.6
Q ss_pred chHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 001481 22 GKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQ 101 (1071)
Q Consensus 22 ~~~~le~al~~nP~d~~~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P~s~~lW~~~a~~e~~~~~~e~A~~lferAL~ 101 (1071)
....+..+|+.+|.++.+|++.+. ++ .+.....+|++++|+.+|+++.+|+..++++. .+.|+.+++||++
T Consensus 334 aK~vvA~Avr~~P~Sv~lW~kA~d-LE----~~~~~K~RVlRKALe~iP~sv~LWKaAVelE~----~~darilL~rAve 404 (913)
T KOG0495|consen 334 AKTVVANAVRFLPTSVRLWLKAAD-LE----SDTKNKKRVLRKALEHIPRSVRLWKAAVELEE----PEDARILLERAVE 404 (913)
T ss_pred HHHHHHHHHHhCCCChhhhhhHHh-hh----hHHHHHHHHHHHHHHhCCchHHHHHHHHhccC----hHHHHHHHHHHHH
Confidence 345789999999999999999999 56 46778889999999999999999999999874 4669999999999
Q ss_pred hcCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhcc-CCccHH
Q 001481 102 SATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRF-PSKKLH 180 (1071)
Q Consensus 102 ~~P~s~~lW~~y~~~~~~~~~~~e~ar~l~erAL~~~~~~~~s~~lW~~yi~fe~~~~~~~~a~~iy~ral~~-p~~~l~ 180 (1071)
+||.+++||+.|+++ +.|+.|++++++|.+.+|++ ..||+..+.+|+..|+.+.+.+|..|++.. -..+.
T Consensus 405 ccp~s~dLwlAlarL-----etYenAkkvLNkaRe~iptd---~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv- 475 (913)
T KOG0495|consen 405 CCPQSMDLWLALARL-----ETYENAKKVLNKAREIIPTD---REIWITAAKLEEANGNVDMVEKIIDRGLSELQANGV- 475 (913)
T ss_pred hccchHHHHHHHHHH-----HHHHHHHHHHHHHHhhCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcce-
Confidence 999999999999999 77899999999999999985 579999999999999999999999999752 11111
Q ss_pred HHHHHHHHHHHhHHHhhhhhchhhHHHHHHHhhcCCccCCcccchhhHHHhhhcCcchhHHHHHHHHHHHHHHHHHHHHH
Q 001481 181 HYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEA 260 (1071)
Q Consensus 181 ~~~~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~i~~~~d~~~~~~~a~~l~~~~~~~~~~y~~a 260 (1071)
-.....|+.+. ..|+.. ....+|.+++...++.+.+++|.+ ..|++++..++ +-
T Consensus 476 --~i~rdqWl~eA---e~~e~a-gsv~TcQAIi~avigigvEeed~~---~tw~~da~~~~-----------------k~ 529 (913)
T KOG0495|consen 476 --EINRDQWLKEA---EACEDA-GSVITCQAIIRAVIGIGVEEEDRK---STWLDDAQSCE-----------------KR 529 (913)
T ss_pred --eecHHHHHHHH---HHHhhc-CChhhHHHHHHHHHhhccccchhH---hHHhhhHHHHH-----------------hc
Confidence 12344555542 233332 223455666555555444444433 24554433322 11
Q ss_pred HHHHHHHHHHHHHhcccCcCCCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCHH
Q 001481 261 SQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGRE 340 (1071)
Q Consensus 261 ~~~~~~~~~fE~ai~~~~~~~~~~~p~~~~~W~~y~~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e 340 (1071)
......+..|..+|+ ..|.+..+|...+.|++.+|..+....++++|+..||..+.+|++|++.++..|+.-
T Consensus 530 ~~~~carAVya~alq--------vfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~ 601 (913)
T KOG0495|consen 530 PAIECARAVYAHALQ--------VFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVP 601 (913)
T ss_pred chHHHHHHHHHHHHh--------hccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcH
Confidence 222334445555554 567888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccchHHHHHHHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001481 341 IASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEAL 420 (1071)
Q Consensus 341 ~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~~A~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al 420 (1071)
.|+.++..|+.. .|+..+||++..+++.++..+++||.+|.++. . ...+.++|++++.|++-+++.++|++++++|+
T Consensus 602 ~ar~il~~af~~-~pnseeiwlaavKle~en~e~eraR~llakar-~-~sgTeRv~mKs~~~er~ld~~eeA~rllEe~l 678 (913)
T KOG0495|consen 602 AARVILDQAFEA-NPNSEEIWLAAVKLEFENDELERARDLLAKAR-S-ISGTERVWMKSANLERYLDNVEEALRLLEEAL 678 (913)
T ss_pred HHHHHHHHHHHh-CCCcHHHHHHHHHHhhccccHHHHHHHHHHHh-c-cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHH
Confidence 999999999995 88888999999999999999999999999997 3 34679999999999999999999999999999
Q ss_pred HHHhhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCCCchhhHHHHHHHhhcc
Q 001481 421 ETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLLLEELIKFTMVHGGRSHISIVDAVISNALYS 500 (1071)
Q Consensus 421 ~~~~~~~~~p~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~~~P~~~~lw~~~~~~e~~~g~~~~a~~~r~l~e~Al~~ 500 (1071)
+. +|.++++|+++|.+++ ..++++.||+.|..|+++||++..+|+.+++++.+.|...++ |.+|++|+.+
T Consensus 679 k~------fp~f~Kl~lmlGQi~e-~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rA---R~ildrarlk 748 (913)
T KOG0495|consen 679 KS------FPDFHKLWLMLGQIEE-QMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRA---RSILDRARLK 748 (913)
T ss_pred Hh------CCchHHHHHHHhHHHH-HHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhH---HHHHHHHHhc
Confidence 99 8999999999999998 999999999999999999999999999999999999977776 5999999999
Q ss_pred CCcccccCChhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcc------ccccCCcccchhhhhhhhccchhh
Q 001481 501 RPDVLKVFSLEDVEDISSLYLQQFLDLCGTIHDIRNAWNQHIKLFPHTVR------TAYECPGRETKSLRAFIRGKRESN 574 (1071)
Q Consensus 501 ~~d~~~~l~~~~~~~lw~~~l~~~e~~~G~~e~a~~~~~ra~~~~p~~~~------~~~~~~~~~~~~~~~~~~~~~~~~ 574 (1071)
||+ ...||...+ ++|.+.|+.+.|..++.+|++.||.++. +++.++.+|+++.+++.+|++++.
T Consensus 749 NPk---------~~~lwle~I-r~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dph 818 (913)
T KOG0495|consen 749 NPK---------NALLWLESI-RMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPH 818 (913)
T ss_pred CCC---------cchhHHHHH-HHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCch
Confidence 983 478999999 9999999999999999999999999998 577789999999999999999987
Q ss_pred -hhcCCccccccc
Q 001481 575 -VASLPQPFESEH 586 (1071)
Q Consensus 575 -i~~lp~~~rs~~ 586 (1071)
+.++.+.||+..
T Consensus 819 Vllaia~lfw~e~ 831 (913)
T KOG0495|consen 819 VLLAIAKLFWSEK 831 (913)
T ss_pred hHHHHHHHHHHHH
Confidence 446669999764
No 2
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=100.00 E-value=2.2e-47 Score=425.37 Aligned_cols=548 Identities=16% Similarity=0.257 Sum_probs=416.9
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh--------CCHHHHHHHH
Q 001481 25 GLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARL--------CSIDKVVEVF 96 (1071)
Q Consensus 25 ~le~al~~nP~d~~~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P~s~~lW~~~a~~e~~~--------~~~e~A~~lf 96 (1071)
.||..|.+||.++..|.+||++... ....+.+.+|||||+.+|.++++|..|++..... .-++.+..+|
T Consensus 15 pfEeEilRnp~svk~W~RYIe~k~~---sp~k~~~~lYERal~~lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~ 91 (835)
T KOG2047|consen 15 PFEEEILRNPFSVKCWLRYIEHKAG---SPDKQRNLLYERALKELPGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCF 91 (835)
T ss_pred chHHHHHcCchhHHHHHHHHHHHcc---CChHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHH
Confidence 6999999999999999999997654 5778899999999999999999999999765433 2378999999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhccCC
Q 001481 97 ERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPS 176 (1071)
Q Consensus 97 erAL~~~P~s~~lW~~y~~~~~~~~~~~e~ar~l~erAL~~~~~~~~s~~lW~~yi~fe~~~~~~~~a~~iy~ral~~p~ 176 (1071)
+|||....+++.||+.|+.|++++ +++...|.+|++||.++|...+ .+||..|+.|..+.+-.+.+.++|+|.|++..
T Consensus 92 er~lv~mHkmpRIwl~Ylq~l~~Q-~~iT~tR~tfdrALraLpvtqH-~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P 169 (835)
T KOG2047|consen 92 ERCLVFMHKMPRIWLDYLQFLIKQ-GLITRTRRTFDRALRALPVTQH-DRIWDLYLKFVESHGLPETSIRVYRRYLKVAP 169 (835)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhc-chHHHHHHHHHHHHHhCchHhh-ccchHHHHHHHHhCCChHHHHHHHHHHHhcCH
Confidence 999999989999999999999999 9999999999999999998764 79999999999999999999999999998654
Q ss_pred ccHHHHHHHHHHHHHhHHHhhh------------hhch-hhHHH---HHHHhhcCCccCCcccchhhHH----HhhhcCc
Q 001481 177 KKLHHYYDSFKKLAGAWKEELE------------CESD-SAMEF---QSELVLEGEVPAYYKDDETSSV----IKDLLDP 236 (1071)
Q Consensus 177 ~~l~~~~~~~~~~~~~~~e~l~------------~~~~-~~~~~---~~~~~~~~~l~~~~~~~e~~~~----i~~~~d~ 236 (1071)
.... -|..|....+.++++.. +.+. +.... +|+++....-. .-+.++..+ +.++.|.
T Consensus 170 ~~~e-eyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~--~~slnvdaiiR~gi~rftDq 246 (835)
T KOG2047|consen 170 EARE-EYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDK--VQSLNVDAIIRGGIRRFTDQ 246 (835)
T ss_pred HHHH-HHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcch--hcccCHHHHHHhhcccCcHH
Confidence 4322 23333333333322211 0001 11122 22232211100 001111222 2233332
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHH--------------------------------H
Q 001481 237 SVDLVRSKAIQKYRFIGEQIYKEASQL-----------------DEK--------------------------------I 267 (1071)
Q Consensus 237 ~~~~~~a~~l~~~~~~~~~~y~~a~~~-----------------~~~--------------------------------~ 267 (1071)
-+.++ .++++|. ++.+.|++|+++ +.. +
T Consensus 247 ~g~Lw--~SLAdYY-Ir~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~ 323 (835)
T KOG2047|consen 247 LGFLW--CSLADYY-IRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHM 323 (835)
T ss_pred HHHHH--HHHHHHH-HHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHH
Confidence 22222 2333332 244444444432 111 1
Q ss_pred HHHHHHhcc-cCcC---CCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHhhcC------CCCCHHHHHHHHHHHHhhC
Q 001481 268 NCFENLIRR-PYFH---VKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIP------CADYPEFWMRYVDFMESKG 337 (1071)
Q Consensus 268 ~~fE~ai~~-~~~~---~~~~~p~~~~~W~~y~~~~~~~g~~~~a~~~yerAL~~------~p~~~~lW~~ya~~l~~~g 337 (1071)
..||..+.+ +... ....+|+++.-|++...+. .|+..+.+.+|.+|+.. .+....+|..||++|+..|
T Consensus 324 a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~--e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~ 401 (835)
T KOG2047|consen 324 ARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLY--EGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNG 401 (835)
T ss_pred HHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhh--cCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcC
Confidence 223333221 1100 1125788899999888886 57889999999999952 3456799999999999999
Q ss_pred CHHHHHHHHHHHHHHhhcc---chHHHHHHHHHHHHhCCHHHHHHHHHHHhhccC------------h------hhHHHH
Q 001481 338 GREIASYALDRATQIFLKR---LPVIHLFNARYKEQIGDTSAARAAFPESYIDSD------------S------RFIEKV 396 (1071)
Q Consensus 338 ~~e~A~~il~rAl~~~~~~---~p~i~~~~a~~e~~~g~~~~A~~~~~~al~~~~------------p------~~~~~w 396 (1071)
+++.||.+|++|+.+-.+. ...+|+.||+.|.+..+++.|++++.+|+ .+. | .+.++|
T Consensus 402 ~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~-~vP~~~~~~~yd~~~pvQ~rlhrSlkiW 480 (835)
T KOG2047|consen 402 DLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRAT-HVPTNPELEYYDNSEPVQARLHRSLKIW 480 (835)
T ss_pred cHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhh-cCCCchhhhhhcCCCcHHHHHHHhHHHH
Confidence 9999999999999864332 35799999999999999999999999996 221 1 457899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCC--ChHHHHHHH
Q 001481 397 TFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVP--NCKLLLEEL 474 (1071)
Q Consensus 397 ~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~~~P--~~~~lw~~~ 474 (1071)
..|++++...|.++..+++|++.|++ ...+|.+.++||.+++ ....+++|+++||+|+.+++ .-.++|..|
T Consensus 481 s~y~DleEs~gtfestk~vYdriidL------riaTPqii~NyAmfLE-eh~yfeesFk~YErgI~LFk~p~v~diW~tY 553 (835)
T KOG2047|consen 481 SMYADLEESLGTFESTKAVYDRIIDL------RIATPQIIINYAMFLE-EHKYFEESFKAYERGISLFKWPNVYDIWNTY 553 (835)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHH------hcCCHHHHHHHHHHHH-hhHHHHHHHHHHHcCCccCCCccHHHHHHHH
Confidence 99999999999999999999999999 7899999999999998 99999999999999999875 567999999
Q ss_pred HHHHHHcCCCCchhhHHHHHHHhhccCCcccccCChhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccc
Q 001481 475 IKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQQFLDLCGTIHDIRNAWNQHIKLFPHTVRTAYE 554 (1071)
Q Consensus 475 ~~~e~~~g~~~~a~~~r~l~e~Al~~~~d~~~~l~~~~~~~lw~~~l~~~e~~~G~~e~a~~~~~ra~~~~p~~~~~~~~ 554 (1071)
+....+.-.-.+.+++|.+||+||. .||++....|+..|. +||+++|-...+..+|+||...++...+..+|
T Consensus 554 Ltkfi~rygg~klEraRdLFEqaL~-------~Cpp~~aKtiyLlYA-~lEEe~GLar~amsiyerat~~v~~a~~l~my 625 (835)
T KOG2047|consen 554 LTKFIKRYGGTKLERARDLFEQALD-------GCPPEHAKTIYLLYA-KLEEEHGLARHAMSIYERATSAVKEAQRLDMY 625 (835)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHh-------cCCHHHHHHHHHHHH-HHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 9766655444456778999999996 688999999999999 99999999999999999999999987776556
Q ss_pred C-Ccccchhhhhhhhccc---hhhhhcCC-cccccccccccccccccCCCCCCC
Q 001481 555 C-PGRETKSLRAFIRGKR---ESNVASLP-QPFESEHLMPSASQDKKFSPPEKS 603 (1071)
Q Consensus 555 ~-~~~~~~~~~~~~~~~~---~~~i~~lp-~~~rs~~~~~~~~~~~~~~~~~~~ 603 (1071)
+ ..+|.+...+ ....| +++|..|| ...|.+|| .||.+|.+||+.++.
T Consensus 626 ni~I~kaae~yG-v~~TR~iYekaIe~Lp~~~~r~mcl-rFAdlEtklGEidRA 677 (835)
T KOG2047|consen 626 NIYIKKAAEIYG-VPRTREIYEKAIESLPDSKAREMCL-RFADLETKLGEIDRA 677 (835)
T ss_pred HHHHHHHHHHhC-CcccHHHHHHHHHhCChHHHHHHHH-HHHHHhhhhhhHHHH
Confidence 5 4455554444 45556 45699999 99999999 899999999999864
No 3
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=100.00 E-value=3.1e-46 Score=410.35 Aligned_cols=478 Identities=20% Similarity=0.309 Sum_probs=403.9
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcC
Q 001481 25 GLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSAT 104 (1071)
Q Consensus 25 ~le~al~~nP~d~~~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P~s~~lW~~~a~~e~~~~~~e~A~~lferAL~~~P 104 (1071)
..++.|+.||+|++.|..+++.+.. ..++++|.+||+++..||.+...|+.||+.|+..++|+.++++|.|||...
T Consensus 8 ~~~~rie~nP~di~sw~~lire~qt---~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv- 83 (656)
T KOG1914|consen 8 NPRERIEENPYDIDSWSQLIREAQT---QPIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV- 83 (656)
T ss_pred CHHHHHhcCCccHHHHHHHHHHHcc---CCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-
Confidence 4589999999999999999998876 489999999999999999999999999999999999999999999999995
Q ss_pred CCHHHHHHHHHHHHhhCCCh----hHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHH---------ccCHHHHHHHHHHH
Q 001481 105 YSVDVWFHYCSLSMSTFEDP----NDVRRLFKRALSFVGKDYLCHTMWDKYIEFEIS---------QQRWSSLAQIFVQT 171 (1071)
Q Consensus 105 ~s~~lW~~y~~~~~~~~~~~----e~ar~l~erAL~~~~~~~~s~~lW~~yi~fe~~---------~~~~~~a~~iy~ra 171 (1071)
.++|||..|+.|+.+..++. ++....|+-|+..+|.+..+..||..|+.|.+. +.+++.+|++|.|+
T Consensus 84 LnlDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqra 163 (656)
T KOG1914|consen 84 LNLDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRA 163 (656)
T ss_pred hhHhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHH
Confidence 68999999999999875544 446678999999999999999999999999874 34789999999999
Q ss_pred hccCCccHHHHHHHHHHHHHhHHHhhhhhchhhHHHHHHHhhcCCccCCcccchhhHHHhhhcCcchhHHHHHHHHHHHH
Q 001481 172 LRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRF 251 (1071)
Q Consensus 172 l~~p~~~l~~~~~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~i~~~~d~~~~~~~a~~l~~~~~ 251 (1071)
|+.|.+++..+|.+|..|..+++..++. .++ .
T Consensus 164 l~tPm~nlEkLW~DY~~fE~~IN~~tar-----------K~i-------------------------------------~ 195 (656)
T KOG1914|consen 164 LVTPMHNLEKLWKDYEAFEQEINIITAR-----------KFI-------------------------------------G 195 (656)
T ss_pred hcCccccHHHHHHHHHHHHHHHHHHHHH-----------HHH-------------------------------------H
Confidence 9999999999999999999987643321 110 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCcCCCC----CChhHHHHHHHHHHHHHHhCC--------HHHHHHHHHHhhcCC
Q 001481 252 IGEQIYKEASQLDEKINCFENLIRRPYFHVKP----LDDIQLKNWHDYLSFAEKQGD--------FDWVVKLYERCLIPC 319 (1071)
Q Consensus 252 ~~~~~y~~a~~~~~~~~~fE~ai~~~~~~~~~----~~p~~~~~W~~y~~~~~~~g~--------~~~a~~~yerAL~~~ 319 (1071)
.+...|..|+.++..+...-+++++....+.+ .+-..+++|+++|.|+++++- -.++..+|+.||...
T Consensus 196 e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l 275 (656)
T KOG1914|consen 196 ERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYL 275 (656)
T ss_pred hhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHH
Confidence 12334777778888888888888764444332 234677899999999987652 358999999999999
Q ss_pred CCCHHHHHHHHHHHHhhCC--------------HHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhCC---HHHHHHHHH
Q 001481 320 ADYPEFWMRYVDFMESKGG--------------REIASYALDRATQIFLKRLPVIHLFNARYKEQIGD---TSAARAAFP 382 (1071)
Q Consensus 320 p~~~~lW~~ya~~l~~~g~--------------~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~---~~~A~~~~~ 382 (1071)
+.++++|+.|+.|+...++ .++|+.+|+|+++...+.+..+++.++.+++..-+ .+..-.+|.
T Consensus 276 ~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~ 355 (656)
T KOG1914|consen 276 GYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYN 355 (656)
T ss_pred hcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHH
Confidence 9999999999999998887 58999999999998677777789999999877555 777788888
Q ss_pred HHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Q 001481 383 ESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIK 462 (1071)
Q Consensus 383 ~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~ 462 (1071)
+++.....+..-+|+.++++-+|..+++.||.+|.+|.+. .....++|+..|.++++..+|.+.|.+||+-||+
T Consensus 356 ~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~------~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLk 429 (656)
T KOG1914|consen 356 KLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKARED------KRTRHHVFVAAALMEYYCSKDKETAFRIFELGLK 429 (656)
T ss_pred HHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhc------cCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHH
Confidence 8874333344566999999999999999999999999987 4555799999999999899999999999999999
Q ss_pred hCCChHHHHHHHHHHHHHcCCCCchhhHHHHHHHhhccCCcccccCChhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001481 463 HVPNCKLLLEELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQQFLDLCGTIHDIRNAWNQHI 542 (1071)
Q Consensus 463 ~~P~~~~lw~~~~~~e~~~g~~~~a~~~r~l~e~Al~~~~d~~~~l~~~~~~~lw~~~l~~~e~~~G~~e~a~~~~~ra~ 542 (1071)
++++++.+...|++|+...|+.+++| .+|++++.. .++++....+|..|+ +||..+|+++.+.++..|..
T Consensus 430 kf~d~p~yv~~YldfL~~lNdd~N~R---~LFEr~l~s------~l~~~ks~~Iw~r~l-~yES~vGdL~si~~lekR~~ 499 (656)
T KOG1914|consen 430 KFGDSPEYVLKYLDFLSHLNDDNNAR---ALFERVLTS------VLSADKSKEIWDRML-EYESNVGDLNSILKLEKRRF 499 (656)
T ss_pred hcCCChHHHHHHHHHHHHhCcchhHH---HHHHHHHhc------cCChhhhHHHHHHHH-HHHHhcccHHHHHHHHHHHH
Confidence 99999999999999999999999884 999999963 688999999999999 99999999999999999999
Q ss_pred HhCCCCccccccCCcccchhhhhhhhccchhhhhcCC
Q 001481 543 KLFPHTVRTAYECPGRETKSLRAFIRGKRESNVASLP 579 (1071)
Q Consensus 543 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lp 579 (1071)
..+|..... ++..+ + .-.+|..|...+|
T Consensus 500 ~af~~~qe~----~~~~~----~-~~v~RY~~~d~~~ 527 (656)
T KOG1914|consen 500 TAFPADQEY----EGNET----A-LFVDRYGILDLYP 527 (656)
T ss_pred HhcchhhcC----CCChH----H-HHHHHHhhccccc
Confidence 999953210 11111 1 2336777777777
No 4
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=100.00 E-value=1.3e-43 Score=400.22 Aligned_cols=510 Identities=37% Similarity=0.662 Sum_probs=423.9
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcC
Q 001481 25 GLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSAT 104 (1071)
Q Consensus 25 ~le~al~~nP~d~~~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P~s~~lW~~~a~~e~~~~~~e~A~~lferAL~~~P 104 (1071)
.+.+.+..+--++++|..++...... ..++.+|.+|..+|..+|.++++|++|+.++.+.|+.+.+.++|+|||...|
T Consensus 33 ~~we~~~~~~~~f~~wt~li~~~~~~--~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip 110 (577)
T KOG1258|consen 33 DYWEILSNDSLDFDAWTTLIQENDSI--EDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIP 110 (577)
T ss_pred hHhhccccchhcccchHHHHhccCch--hHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhh
Confidence 46666666666777777776654443 6779999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhccCCccHHHHHH
Q 001481 105 YSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYD 184 (1071)
Q Consensus 105 ~s~~lW~~y~~~~~~~~~~~e~ar~l~erAL~~~~~~~~s~~lW~~yi~fe~~~~~~~~a~~iy~ral~~p~~~l~~~~~ 184 (1071)
.++++|+.|+.|+....++.+..|++|++|+..+|.+|.|+++|..|++||...+++..+..||+|.|.+|...+..+|.
T Consensus 111 ~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~ 190 (577)
T KOG1258|consen 111 LSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFD 190 (577)
T ss_pred hHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHH
Confidence 99999999999999887899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHHHhhhhhchhhHHHHHHHhhcCCcc-CCcccchhhHHHhhhcCcchhHHHHH-HHHHHHHHHHHHHHHHHH
Q 001481 185 SFKKLAGAWKEELECESDSAMEFQSELVLEGEVP-AYYKDDETSSVIKDLLDPSVDLVRSK-AIQKYRFIGEQIYKEASQ 262 (1071)
Q Consensus 185 ~~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~l~-~~~~~~e~~~~i~~~~d~~~~~~~a~-~l~~~~~~~~~~y~~a~~ 262 (1071)
.|.++++..+..+....+...+.....+.+..+. .....++.+..++...+..+.++.++ .+..+..+++..|.....
T Consensus 191 ~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~ 270 (577)
T KOG1258|consen 191 RFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEE 270 (577)
T ss_pred HHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHh
Confidence 9999998865444333222222111111100000 11122334444556666667777666 445566778899999999
Q ss_pred HHHHHHHHHHHhcccCcCCCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCHHHH
Q 001481 263 LDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIA 342 (1071)
Q Consensus 263 ~~~~~~~fE~ai~~~~~~~~~~~p~~~~~W~~y~~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A 342 (1071)
...++..||..|+++|+++.++++.+...|+.|++|+.+.|+++++.-+|+||+..|..+.++|+.|+.+++..|+.+.|
T Consensus 271 ~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~ 350 (577)
T KOG1258|consen 271 EEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLA 350 (577)
T ss_pred HHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccchHHHHHHHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001481 343 SYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALET 422 (1071)
Q Consensus 343 ~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~~A~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~ 422 (1071)
..++.+|+.++.|..|.+++.++.|++..|+++.|+.+|++...++ |+.+.+-+.++.++++.|+++.+.. +...+..
T Consensus 351 ~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~~-~~~l~s~ 428 (577)
T KOG1258|consen 351 NNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDANY-KNELYSS 428 (577)
T ss_pred HHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhhH-HHHHHHH
Confidence 9999999999999999999999999999999999999999999777 9999999999999999999999985 2222222
Q ss_pred H-hhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCCCchhhHHHHHHHhhccC
Q 001481 423 A-AEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLLLEELIKFTMVHGGRSHISIVDAVISNALYSR 501 (1071)
Q Consensus 423 ~-~~~~~~p~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~~~P~~~~lw~~~~~~e~~~g~~~~a~~~r~l~e~Al~~~ 501 (1071)
. ...........+++.++++.+...++.+.|+.++..|+...|++..+|..+++|+...+...+...+..++...+...
T Consensus 429 ~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~d~~e~~~~~~~~~~ 508 (577)
T KOG1258|consen 429 IYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQPSGREYDLLEPIDWKELKML 508 (577)
T ss_pred hcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCcchhhhhhhhHHHHHHhhh
Confidence 2 223344557789999999988889999999999999999999999999999999999887666655556666655432
Q ss_pred CcccccCChhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 001481 502 PDVLKVFSLEDVEDISSLYLQQFLDLCGTIHDIRNAWNQHIKLF 545 (1071)
Q Consensus 502 ~d~~~~l~~~~~~~lw~~~l~~~e~~~G~~e~a~~~~~ra~~~~ 545 (1071)
.+.++...--..|+ +|.+.+|....+.....++++.+
T Consensus 509 ------~~~~~~~~~~~k~~-ef~e~~g~~~~~~~~~~~~l~~~ 545 (577)
T KOG1258|consen 509 ------IDFDDSRSSTDKYI-EFLEWFGIDHKGAQDERPHLKNF 545 (577)
T ss_pred ------ccccccccchHHHH-HHHHhccchhHhHhhchHHHHHH
Confidence 11222222222388 99999999998888888888876
No 5
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=8.1e-41 Score=361.31 Aligned_cols=496 Identities=18% Similarity=0.269 Sum_probs=392.7
Q ss_pred ccCCCCCCCCCcchH----------HHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHCCCCHHHHHHH
Q 001481 10 SLSAEPNSPVGFGKQ----------GLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKY 79 (1071)
Q Consensus 10 ~~~~~~~~~~~~~~~----------~le~al~~nP~d~~~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P~s~~lW~~~ 79 (1071)
.....|+...+|..+ .|+..|+.|-.++..|++|+..-+.. .++.+||.||+|||..+-.+..+|+.|
T Consensus 36 ~~~~ppk~~ItD~~EL~eYq~RkRkefEd~irrnR~~~~~WikYaqwEesq--~e~~RARSv~ERALdvd~r~itLWlkY 113 (677)
T KOG1915|consen 36 AAPRPPKQKITDSEELSEYQLRKRKEFEDQIRRNRLNMQVWIKYAQWEESQ--KEIQRARSVFERALDVDYRNITLWLKY 113 (677)
T ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHhcccccchHHHHH
Confidence 445667777777543 78999999999999999999988877 899999999999999999999999999
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHcc
Q 001481 80 ADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQ 159 (1071)
Q Consensus 80 a~~e~~~~~~e~A~~lferAL~~~P~s~~lW~~y~~~~~~~~~~~e~ar~l~erAL~~~~~~~~s~~lW~~yi~fe~~~~ 159 (1071)
++++++.+.+..|+.++.||+...|.--.+|..|+-++... |++.-||.+|+|-+.--| ...-|..|++||....
T Consensus 114 ae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~L-gNi~gaRqiferW~~w~P----~eqaW~sfI~fElRyk 188 (677)
T KOG1915|consen 114 AEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEML-GNIAGARQIFERWMEWEP----DEQAWLSFIKFELRYK 188 (677)
T ss_pred HHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHh-cccHHHHHHHHHHHcCCC----cHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999988887 999999999999998766 3578999999999999
Q ss_pred CHHHHHHHHHHHh-ccCCccHHHHHHHHHHHHHhHHHhhhhhchhhHHHHHHHhhcCCccCCcccchhh---HHHhhhcC
Q 001481 160 RWSSLAQIFVQTL-RFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETS---SVIKDLLD 235 (1071)
Q Consensus 160 ~~~~a~~iy~ral-~~p~~~l~~~~~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~---~~i~~~~d 235 (1071)
.++.+|.||.|.+ +.|.-..|.-|..|+.-.+.+. ..+.+++.+++.. + ++.+.+ ..+..|-+
T Consensus 189 eieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~---------~aR~VyerAie~~-~---~d~~~e~lfvaFA~fEe 255 (677)
T KOG1915|consen 189 EIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVA---------LARSVYERAIEFL-G---DDEEAEILFVAFAEFEE 255 (677)
T ss_pred HHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHH---------HHHHHHHHHHHHh-h---hHHHHHHHHHHHHHHHH
Confidence 9999999999996 5665444444444443333211 1234444444321 1 111111 12345556
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------h----cccCcCCCCCChhHHHHHHHHHHHHHH
Q 001481 236 PSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENL----------I----RRPYFHVKPLDDIQLKNWHDYLSFAEK 301 (1071)
Q Consensus 236 ~~~~~~~a~~l~~~~~~~~~~y~~a~~~~~~~~~fE~a----------i----~~~~~~~~~~~p~~~~~W~~y~~~~~~ 301 (1071)
..+++++++.+++|.+..- --.++..++..+..||+. | +..|......+|.+.+.|..|+.+++.
T Consensus 256 ~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~ 334 (677)
T KOG1915|consen 256 RQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEES 334 (677)
T ss_pred HHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHh
Confidence 6788888888887732100 001222333333333331 1 112333334688999999999999999
Q ss_pred hCCHHHHHHHHHHhhcCCCC---------CHHHHHHHHHHHHh-hCCHHHHHHHHHHHHHHhhcc----chHHHHHHHHH
Q 001481 302 QGDFDWVVKLYERCLIPCAD---------YPEFWMRYVDFMES-KGGREIASYALDRATQIFLKR----LPVIHLFNARY 367 (1071)
Q Consensus 302 ~g~~~~a~~~yerAL~~~p~---------~~~lW~~ya~~l~~-~g~~e~A~~il~rAl~~~~~~----~p~i~~~~a~~ 367 (1071)
.|+.++++++|+||+...|- +.-+|++|+.|.+- ..+.+.++.+|.+++++ .|+ ...+|++||.|
T Consensus 335 ~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~f 413 (677)
T KOG1915|consen 335 VGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQF 413 (677)
T ss_pred cCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHH
Confidence 99999999999999986553 34689999987654 46789999999999996 443 34899999999
Q ss_pred HHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhhc
Q 001481 368 KEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTT 447 (1071)
Q Consensus 368 e~~~g~~~~A~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~ 447 (1071)
+.+..++..||+++-+|| -.+|. .+++-.|+.++..++++|.+|++|++-|+. .|.+-..|..||.++. .+
T Consensus 414 eIRq~~l~~ARkiLG~AI-G~cPK-~KlFk~YIelElqL~efDRcRkLYEkfle~------~Pe~c~~W~kyaElE~-~L 484 (677)
T KOG1915|consen 414 EIRQLNLTGARKILGNAI-GKCPK-DKLFKGYIELELQLREFDRCRKLYEKFLEF------SPENCYAWSKYAELET-SL 484 (677)
T ss_pred HHHHcccHHHHHHHHHHh-ccCCc-hhHHHHHHHHHHHHhhHHHHHHHHHHHHhc------ChHhhHHHHHHHHHHH-Hh
Confidence 999999999999999999 45564 567999999999999999999999999998 7888999999999998 99
Q ss_pred CCHHHHHHHHHHHHhhCCCh--HHHHHHHHHHHHHcCCCCchhhHHHHHHHhhccCCcccccCChhhHHHHHHHHHHHHH
Q 001481 448 GSADNARDILIDGIKHVPNC--KLLLEELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQQFL 525 (1071)
Q Consensus 448 g~~e~Ar~i~e~al~~~P~~--~~lw~~~~~~e~~~g~~~~a~~~r~l~e~Al~~~~d~~~~l~~~~~~~lw~~~l~~~e 525 (1071)
|+.++||.||+-|+....-+ ..+|..|++||...|.++++ |++|++.|...+ ...+|..+. .||
T Consensus 485 gdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~eka---R~LYerlL~rt~----------h~kvWisFA-~fe 550 (677)
T KOG1915|consen 485 GDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKA---RALYERLLDRTQ----------HVKVWISFA-KFE 550 (677)
T ss_pred hhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHH---HHHHHHHHHhcc----------cchHHHhHH-HHh
Confidence 99999999999999765443 35899999999999999887 599999886533 224899999 999
Q ss_pred H-----hcC-----------CHHHHHHHHHHHHHhCCCCcc
Q 001481 526 D-----LCG-----------TIHDIRNAWNQHIKLFPHTVR 550 (1071)
Q Consensus 526 ~-----~~G-----------~~e~a~~~~~ra~~~~p~~~~ 550 (1071)
. .-| ++..|+++|+||+..+.+++.
T Consensus 551 ~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~ 591 (677)
T KOG1915|consen 551 ASASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTP 591 (677)
T ss_pred ccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCc
Confidence 6 445 788899999999999987654
No 6
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=100.00 E-value=2.2e-37 Score=332.86 Aligned_cols=464 Identities=16% Similarity=0.258 Sum_probs=380.6
Q ss_pred CCCCCCcchHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHHH
Q 001481 15 PNSPVGFGKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVE 94 (1071)
Q Consensus 15 ~~~~~~~~~~~le~al~~nP~d~~~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P~s~~lW~~~a~~e~~~~~~e~A~~ 94 (1071)
|.+-...|...|++.|+.||+|+..|+.|+++++.. +..++.|++|+.++.-||.-...|..|+.-|+..++|..++.
T Consensus 20 ~~~~i~~D~lrLRerIkdNPtnI~S~fqLiq~~~tq--~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~ 97 (660)
T COG5107 20 PSDNIHGDELRLRERIKDNPTNILSYFQLIQYLETQ--ESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVES 97 (660)
T ss_pred cccCCCchHHHHHHHhhcCchhHHHHHHHHHHHhhh--hhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHH
Confidence 444555567799999999999999999999999988 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhhCCC-----hhHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHH---------ccC
Q 001481 95 VFERAVQSATYSVDVWFHYCSLSMSTFED-----PNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEIS---------QQR 160 (1071)
Q Consensus 95 lferAL~~~P~s~~lW~~y~~~~~~~~~~-----~e~ar~l~erAL~~~~~~~~s~~lW~~yi~fe~~---------~~~ 160 (1071)
+|.|||+.. .+++||..|+.|+++.... ...+-++|+..+...+.++.+..+|..|+.|.+. +.+
T Consensus 98 lf~rCL~k~-l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqr 176 (660)
T COG5107 98 LFGRCLKKS-LNLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQR 176 (660)
T ss_pred HHHHHHhhh-ccHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHH
Confidence 999999984 6899999999999887422 3346678888888888888899999999999864 346
Q ss_pred HHHHHHHHHHHhccCCccHHHHHHHHHHHHHhHHHhhhhhchhhHHHHHHHhhcCCccCCcccchhhHHHhhhcCcchhH
Q 001481 161 WSSLAQIFVQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDL 240 (1071)
Q Consensus 161 ~~~a~~iy~ral~~p~~~l~~~~~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~i~~~~d~~~~~ 240 (1071)
++.+|.+|.|+|+.|.+++.++|.+|..|..+++.+.+ + .++. +..+
T Consensus 177 id~iR~~Y~ral~tP~~nleklW~dy~~fE~e~N~~Ta-r----------Kfvg--------------------e~sp-- 223 (660)
T COG5107 177 IDKIRNGYMRALQTPMGNLEKLWKDYENFELELNKITA-R----------KFVG--------------------ETSP-- 223 (660)
T ss_pred HHHHHHHHHHHHcCccccHHHHHHHHHHHHHHHHHHHH-H----------HHhc--------------------ccCH--
Confidence 79999999999999999999999999999998765432 1 1111 1111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcC----CCCCChhHHHHHHHHHHHHHHhC-----C--HHHHH
Q 001481 241 VRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFH----VKPLDDIQLKNWHDYLSFAEKQG-----D--FDWVV 309 (1071)
Q Consensus 241 ~~a~~l~~~~~~~~~~y~~a~~~~~~~~~fE~ai~~~~~~----~~~~~p~~~~~W~~y~~~~~~~g-----~--~~~a~ 309 (1071)
.|.+|+..+..+...-++++..-+. ..+........|+++|.|+.+.| + ..++-
T Consensus 224 ---------------~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l~L~~~~~~qRi~ 288 (660)
T COG5107 224 ---------------IYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEMENGLKLGGRPHEQRIH 288 (660)
T ss_pred ---------------HHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhHhhcCCcccCCCcHHHHHH
Confidence 2333444444444444444321000 00011223356999999998765 2 35788
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhCCHHHHHHHHHHHhhcc-
Q 001481 310 KLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDS- 388 (1071)
Q Consensus 310 ~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~~A~~~~~~al~~~- 388 (1071)
.+|+.++...+..+++|+.|..++...++-+.|....+|++.. +|.+.+.++.+++..++-++.+.+|++++..+
T Consensus 289 y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~----spsL~~~lse~yel~nd~e~v~~~fdk~~q~L~ 364 (660)
T COG5107 289 YIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEM----SPSLTMFLSEYYELVNDEEAVYGCFDKCTQDLK 364 (660)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccC----CCchheeHHHHHhhcccHHHHhhhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999875 88899999999999999888888888875311
Q ss_pred ----------------Ch------------hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHH
Q 001481 389 ----------------DS------------RFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFS 440 (1071)
Q Consensus 389 ----------------~p------------~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A 440 (1071)
++ ...-+|+-+++..+|..+++.||++|-++.+. ....+++|+.-|
T Consensus 365 r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~------~~~~h~vyi~~A 438 (660)
T COG5107 365 RKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKE------GIVGHHVYIYCA 438 (660)
T ss_pred HHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhcc------CCCCcceeeeHH
Confidence 01 22346888888888999999999999999887 456788999999
Q ss_pred HHHHhhcCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCCCchhhHHHHHHHhhccCCcccccCChhhHHHHHHHH
Q 001481 441 RLTYTTTGSADNARDILIDGIKHVPNCKLLLEELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLY 520 (1071)
Q Consensus 441 ~~~~~~~g~~e~Ar~i~e~al~~~P~~~~lw~~~~~~e~~~g~~~~a~~~r~l~e~Al~~~~d~~~~l~~~~~~~lw~~~ 520 (1071)
.++++..||...|..||+-|+..+|++..+...|+.|+...|+.+++ |++|++++. ++-......+|..|
T Consensus 439 ~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~na---raLFetsv~-------r~~~~q~k~iy~km 508 (660)
T COG5107 439 FIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENA---RALFETSVE-------RLEKTQLKRIYDKM 508 (660)
T ss_pred HHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHH---HHHHHHhHH-------HHHHhhhhHHHHHH
Confidence 99988999999999999999999999999999999999999999887 599999985 34445668899999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCcc
Q 001481 521 LQQFLDLCGTIHDIRNAWNQHIKLFPHTVR 550 (1071)
Q Consensus 521 l~~~e~~~G~~e~a~~~~~ra~~~~p~~~~ 550 (1071)
+ ++|..+|+++.+..+.+|...++|....
T Consensus 509 i-~YEs~~G~lN~v~sLe~rf~e~~pQen~ 537 (660)
T COG5107 509 I-EYESMVGSLNNVYSLEERFRELVPQENL 537 (660)
T ss_pred H-HHHHhhcchHHHHhHHHHHHHHcCcHhH
Confidence 9 9999999999999999999999998644
No 7
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1.8e-36 Score=327.65 Aligned_cols=450 Identities=16% Similarity=0.218 Sum_probs=349.5
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHH
Q 001481 57 MIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALS 136 (1071)
Q Consensus 57 ~a~~vyeraL~~~P~s~~lW~~~a~~e~~~~~~e~A~~lferAL~~~P~s~~lW~~y~~~~~~~~~~~e~ar~l~erAL~ 136 (1071)
+.|+-|+-.++.+-.+...|..|+.|++..+++..|+.+|||||..+..++.||+.|+.+++++ +.+..||.+++||+.
T Consensus 57 RkRkefEd~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emkn-k~vNhARNv~dRAvt 135 (677)
T KOG1915|consen 57 RKRKEFEDQIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKN-KQVNHARNVWDRAVT 135 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhh-hhHhHHHHHHHHHHH
Confidence 4678899999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred hcCCCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhc-cCCccHHHHHHHHHHHHHhHHHhhhhhchhhHHHHHHHhhcC
Q 001481 137 FVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLR-FPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEG 215 (1071)
Q Consensus 137 ~~~~~~~s~~lW~~yi~fe~~~~~~~~a~~iy~ral~-~p~~~l~~~~~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~ 215 (1071)
.+|. -..+|-.|+-+|+..|++.-||.||+|.+. -|..+.|..|..|+--.++++. .+.+++-.+-.
T Consensus 136 ~lPR---VdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeier---------aR~IYerfV~~ 203 (677)
T KOG1915|consen 136 ILPR---VDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIER---------ARSIYERFVLV 203 (677)
T ss_pred hcch---HHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHH---------HHHHHHHHhee
Confidence 9986 568999999999999999999999999997 5767777777666665555432 22233322211
Q ss_pred CccCCcccchhhHHHhhhcCcchhHHHHHHHHH-------------HHHHHHHHHHHH-HHHHHHHHHHHHHhcccCcCC
Q 001481 216 EVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQK-------------YRFIGEQIYKEA-SQLDEKINCFENLIRRPYFHV 281 (1071)
Q Consensus 216 ~l~~~~~~~e~~~~i~~~~d~~~~~~~a~~l~~-------------~~~~~~~~y~~a-~~~~~~~~~fE~ai~~~~~~~ 281 (1071)
.. +. ..+....++-+..+....++.++. .+.+.=..|+.. +++.+++..|.-+|...
T Consensus 204 HP----~v-~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~---- 274 (677)
T KOG1915|consen 204 HP----KV-SNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI---- 274 (677)
T ss_pred cc----cH-HHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----
Confidence 10 00 000001111111121111221111 111111122222 33444555566565421
Q ss_pred CCCChhHHHHHHHHHHHHHHhCCHHH--------HHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHh
Q 001481 282 KPLDDIQLKNWHDYLSFAEKQGDFDW--------VVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIF 353 (1071)
Q Consensus 282 ~~~~p~~~~~W~~y~~~~~~~g~~~~--------a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~ 353 (1071)
.......++..|..|+++-|+..- -+.-|+.-+..+|.+.+.|+.|..+.+..|+.+..+++|+||+...
T Consensus 275 --pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanv 352 (677)
T KOG1915|consen 275 --PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANV 352 (677)
T ss_pred --CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccC
Confidence 112235789999999999997542 3447889999999999999999999999999999999999999853
Q ss_pred hccch--------HHHHHHHHHHH-HhCCHHHHHHHHHHHhhccCh----hhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001481 354 LKRLP--------VIHLFNARYKE-QIGDTSAARAAFPESYIDSDS----RFIEKVTFKANMERRLGNFVAACDTYKEAL 420 (1071)
Q Consensus 354 ~~~~p--------~i~~~~a~~e~-~~g~~~~A~~~~~~al~~~~p----~~~~~w~~~a~le~~~g~~~~A~~~y~~Al 420 (1071)
.|... -+|+.|+.|++ ...+++.++.+|..+| ++.| .+.++|+.|+.|+.|..++..||+++..||
T Consensus 353 pp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l-~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI 431 (677)
T KOG1915|consen 353 PPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACL-DLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI 431 (677)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-hhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh
Confidence 23221 37888888864 4889999999999999 4666 568999999999999999999999999999
Q ss_pred HHHhhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCCCchhhHHHHHHHhhcc
Q 001481 421 ETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLLLEELIKFTMVHGGRSHISIVDAVISNALYS 500 (1071)
Q Consensus 421 ~~~~~~~~~p~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~~~P~~~~lw~~~~~~e~~~g~~~~a~~~r~l~e~Al~~ 500 (1071)
.. .|. .+++-.|..++. .++.++++|++|++-|+..|.+...|..|+.||..+|+.+++ |++|+-|++.
T Consensus 432 G~------cPK-~KlFk~YIelEl-qL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRa---RaifelAi~q 500 (677)
T KOG1915|consen 432 GK------CPK-DKLFKGYIELEL-QLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRA---RAIFELAISQ 500 (677)
T ss_pred cc------CCc-hhHHHHHHHHHH-HHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHH---HHHHHHHhcC
Confidence 88 332 456666666776 899999999999999999999999999999999999999887 5999999974
Q ss_pred CCcccccCChhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcc
Q 001481 501 RPDVLKVFSLEDVEDISSLYLQQFLDLCGTIHDIRNAWNQHIKLFPHTVR 550 (1071)
Q Consensus 501 ~~d~~~~l~~~~~~~lw~~~l~~~e~~~G~~e~a~~~~~ra~~~~p~~~~ 550 (1071)
. ..+.++-||..|+ +||...|..+.++++|+|.+..-++..-
T Consensus 501 p-------~ldmpellwkaYI-dFEi~~~E~ekaR~LYerlL~rt~h~kv 542 (677)
T KOG1915|consen 501 P-------ALDMPELLWKAYI-DFEIEEGEFEKARALYERLLDRTQHVKV 542 (677)
T ss_pred c-------ccccHHHHHHHhh-hhhhhcchHHHHHHHHHHHHHhcccchH
Confidence 2 2578899999999 9999999999999999999998887654
No 8
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=100.00 E-value=8.2e-32 Score=301.23 Aligned_cols=476 Identities=16% Similarity=0.179 Sum_probs=360.4
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc
Q 001481 24 QGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSA 103 (1071)
Q Consensus 24 ~~le~al~~nP~d~~~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P~s~~lW~~~a~~e~~~~~~e~A~~lferAL~~~ 103 (1071)
..|....+.||.+...|+.-+.+-+.. |.+..|+.+..+.++..|.|.++|++.+++. ..+.|+.+...|++.+
T Consensus 272 ~llKSvretnP~hp~gWIAsArLEEva--gKl~~Ar~~I~~GCe~cprSeDvWLeaiRLh----p~d~aK~vvA~Avr~~ 345 (913)
T KOG0495|consen 272 LLLKSVRETNPKHPPGWIASARLEEVA--GKLSVARNLIMKGCEECPRSEDVWLEAIRLH----PPDVAKTVVANAVRFL 345 (913)
T ss_pred HHHHHHHhcCCCCCchHHHHHHHHHHh--hHHHHHHHHHHHHHhhCCchHHHHHHHHhcC----ChHHHHHHHHHHHHhC
Confidence 367777889999999999999977777 8999999999999999999999999998875 4577999999999999
Q ss_pred CCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhc-cCCc-cHHH
Q 001481 104 TYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLR-FPSK-KLHH 181 (1071)
Q Consensus 104 P~s~~lW~~y~~~~~~~~~~~e~ar~l~erAL~~~~~~~~s~~lW~~yi~fe~~~~~~~~a~~iy~ral~-~p~~-~l~~ 181 (1071)
|.|+.||+.-++++.. ...-++++.+||..+|. +..||+..++||.. +.+|.++.||+. +|.. ++|.
T Consensus 346 P~Sv~lW~kA~dLE~~----~~~K~RVlRKALe~iP~---sv~LWKaAVelE~~----~darilL~rAveccp~s~dLwl 414 (913)
T KOG0495|consen 346 PTSVRLWLKAADLESD----TKNKKRVLRKALEHIPR---SVRLWKAAVELEEP----EDARILLERAVECCPQSMDLWL 414 (913)
T ss_pred CCChhhhhhHHhhhhH----HHHHHHHHHHHHHhCCc---hHHHHHHHHhccCh----HHHHHHHHHHHHhccchHHHHH
Confidence 9999999998888644 35567899999999886 67899999988863 448889999974 5654 5555
Q ss_pred HHHHHHHHHH---hHHHhhhhhchhhHHHHHHHhhcCCccCCcccchhhHHHhhhcCcchhHHHHHHHHHHHHHHHHHHH
Q 001481 182 YYDSFKKLAG---AWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYK 258 (1071)
Q Consensus 182 ~~~~~~~~~~---~~~e~l~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~i~~~~d~~~~~~~a~~l~~~~~~~~~~y~ 258 (1071)
.+..++.+.+ -++++=+. .-...++|.....-++-. + ...-+.++|.+-+. ++. ...+.+-+...+.
T Consensus 415 AlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~n-g-n~~mv~kii~rgl~---~L~----~ngv~i~rdqWl~ 484 (913)
T KOG0495|consen 415 ALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEAN-G-NVDMVEKIIDRGLS---ELQ----ANGVEINRDQWLK 484 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhc-C-CHHHHHHHHHHHHH---HHh----hcceeecHHHHHH
Confidence 5443333222 11111000 000011111111000000 0 00001111100000 000 0000011222233
Q ss_pred HHHHHHHH--HHHHHHHhcccCcCCCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhh
Q 001481 259 EASQLDEK--INCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESK 336 (1071)
Q Consensus 259 ~a~~~~~~--~~~fE~ai~~~~~~~~~~~p~~~~~W~~y~~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~ 336 (1071)
+|...... ..+-. +|-+....+...+.+....|..-+..+++.+.++-++.+|..+|..+|....+|...+.|...+
T Consensus 485 eAe~~e~agsv~TcQ-AIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~h 563 (913)
T KOG0495|consen 485 EAEACEDAGSVITCQ-AIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSH 563 (913)
T ss_pred HHHHHhhcCChhhHH-HHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhc
Confidence 22221110 00001 1111112233345677789999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHH
Q 001481 337 GGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTY 416 (1071)
Q Consensus 337 g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~~A~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~~y 416 (1071)
|..++...+|.+|+.. .|..+.+|++|+.-....|++-.||.++..++ +..|++.++|+....++.+...+++||.+|
T Consensus 564 gt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af-~~~pnseeiwlaavKle~en~e~eraR~ll 641 (913)
T KOG0495|consen 564 GTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAF-EANPNSEEIWLAAVKLEFENDELERARDLL 641 (913)
T ss_pred CcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHH-HhCCCcHHHHHHHHHHhhccccHHHHHHHH
Confidence 9999999999999986 67778899999999999999999999999999 779999999999999999999999999999
Q ss_pred HHHHHHHhhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCCCchhhHHHHHHH
Q 001481 417 KEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLLLEELIKFTMVHGGRSHISIVDAVISN 496 (1071)
Q Consensus 417 ~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~~~P~~~~lw~~~~~~e~~~g~~~~a~~~r~l~e~ 496 (1071)
.+|... ..+..+|+..+.+++ ..+.+++|+.+++++|+.+|+...+|+.+..++...++.+.+ |..|..
T Consensus 642 akar~~-------sgTeRv~mKs~~~er-~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~a---R~aY~~ 710 (913)
T KOG0495|consen 642 AKARSI-------SGTERVWMKSANLER-YLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMA---REAYLQ 710 (913)
T ss_pred HHHhcc-------CCcchhhHHHhHHHH-HhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHH---HHHHHh
Confidence 999886 567899999999998 999999999999999999999999999999999999888776 599999
Q ss_pred hhccCCcccccCChhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcc
Q 001481 497 ALYSRPDVLKVFSLEDVEDISSLYLQQFLDLCGTIHDIRNAWNQHIKLFPHTVR 550 (1071)
Q Consensus 497 Al~~~~d~~~~l~~~~~~~lw~~~l~~~e~~~G~~e~a~~~~~ra~~~~p~~~~ 550 (1071)
++.++| .+..||.... ++|+..|.+-.|+.+++|+.-..|++..
T Consensus 711 G~k~cP---------~~ipLWllLa-kleEk~~~~~rAR~ildrarlkNPk~~~ 754 (913)
T KOG0495|consen 711 GTKKCP---------NSIPLWLLLA-KLEEKDGQLVRARSILDRARLKNPKNAL 754 (913)
T ss_pred ccccCC---------CCchHHHHHH-HHHHHhcchhhHHHHHHHHHhcCCCcch
Confidence 998877 3567999999 9999999999999999999999999876
No 9
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=100.00 E-value=1.7e-29 Score=282.81 Aligned_cols=506 Identities=16% Similarity=0.231 Sum_probs=371.0
Q ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHHhc----CC--CcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 001481 23 KQGLEEFIAEGSLDFDEWTSLLSEIENS----CP--DDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVF 96 (1071)
Q Consensus 23 ~~~le~al~~nP~d~~~W~~li~~~~~~----~~--~~~~~a~~vyeraL~~~P~s~~lW~~~a~~e~~~~~~e~A~~lf 96 (1071)
.-.||++++..|.|+++|..|++.-... ++ ..++.....|||+|...-..+.+|+.|+.+.++.+++...|..|
T Consensus 46 ~~lYERal~~lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~lv~mHkmpRIwl~Ylq~l~~Q~~iT~tR~tf 125 (835)
T KOG2047|consen 46 NLLYERALKELPGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERCLVFMHKMPRIWLDYLQFLIKQGLITRTRRTF 125 (835)
T ss_pred HHHHHHHHHHCCCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcchHHHHHHHH
Confidence 3489999999999999999999754321 22 45677889999999999999999999999999999999999999
Q ss_pred HHHHHhcCC--CHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhcCCCC--------------------------------
Q 001481 97 ERAVQSATY--SVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDY-------------------------------- 142 (1071)
Q Consensus 97 erAL~~~P~--s~~lW~~y~~~~~~~~~~~e~ar~l~erAL~~~~~~~-------------------------------- 142 (1071)
.|||...|- +.+||-.|++|+.++ +-.+.+.++|+|-|+..|...
T Consensus 126 drALraLpvtqH~rIW~lyl~Fv~~~-~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk 204 (835)
T KOG2047|consen 126 DRALRALPVTQHDRIWDLYLKFVESH-GLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSK 204 (835)
T ss_pred HHHHHhCchHhhccchHHHHHHHHhC-CChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhh
Confidence 999999886 568999999999988 777777777777665332210
Q ss_pred ---C--------------------------------------chHHHHHHHHHHHHccCHHHHHHHHHHHhcc--CCccH
Q 001481 143 ---L--------------------------------------CHTMWDKYIEFEISQQRWSSLAQIFVQTLRF--PSKKL 179 (1071)
Q Consensus 143 ---~--------------------------------------s~~lW~~yi~fe~~~~~~~~a~~iy~ral~~--p~~~l 179 (1071)
. -+.||...+++..+.|.+++||.+|++++.. -..++
T Consensus 205 ~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDF 284 (835)
T KOG2047|consen 205 KGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDF 284 (835)
T ss_pred cccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhH
Confidence 0 2467888888888889999999999999863 33578
Q ss_pred HHHHHHHHHHHHhHHH-hhh-h-hch------hhHH---HHHHHhhcCC--------ccCCcccch------------hh
Q 001481 180 HHYYDSFKKLAGAWKE-ELE-C-ESD------SAME---FQSELVLEGE--------VPAYYKDDE------------TS 227 (1071)
Q Consensus 180 ~~~~~~~~~~~~~~~e-~l~-~-~~~------~~~~---~~~~~~~~~~--------l~~~~~~~e------------~~ 227 (1071)
..+|+.|..|....-. .++ + +.+ ...+ ..++.+.+.. +......-+ ..
T Consensus 285 t~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~ 364 (835)
T KOG2047|consen 285 TQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAA 364 (835)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChH
Confidence 8888888888765311 111 0 000 0000 0111111100 000000000 01
Q ss_pred HHHhhhcCcchhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCCCCCChhHHHHHHHHHHHHHHhCC
Q 001481 228 SVIKDLLDPSVDLVRSK---AIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGD 304 (1071)
Q Consensus 228 ~~i~~~~d~~~~~~~a~---~l~~~~~~~~~~y~~a~~~~~~~~~fE~ai~~~~~~~~~~~p~~~~~W~~y~~~~~~~g~ 304 (1071)
..+..+.+........+ .+..+|.....+|.....+..+|..||++++.+|..+. +-..+|..+++.+.++.+
T Consensus 365 ~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~----dLa~vw~~waemElrh~~ 440 (835)
T KOG2047|consen 365 EQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVE----DLAEVWCAWAEMELRHEN 440 (835)
T ss_pred HHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchH----HHHHHHHHHHHHHHhhhh
Confidence 11111111000000000 22445777888999999999999999999987765543 334799999999999999
Q ss_pred HHHHHHHHHHhhcCCC------------------CCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhccchHHHHHHHH
Q 001481 305 FDWVVKLYERCLIPCA------------------DYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNAR 366 (1071)
Q Consensus 305 ~~~a~~~yerAL~~~p------------------~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~ 366 (1071)
++.|..+.++|+..-. ++..+|.+|+++++..|-++..+.+|+|.+.+ .-..|.+-..||.
T Consensus 441 ~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidL-riaTPqii~NyAm 519 (835)
T KOG2047|consen 441 FEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDL-RIATPQIIINYAM 519 (835)
T ss_pred HHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-hcCCHHHHHHHHH
Confidence 9999999999985311 24589999999999999999999999999986 3356889999999
Q ss_pred HHHHhCCHHHHHHHHHHHhhcc-ChhhHHHHHHHHH-HHHHcC--CHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHH
Q 001481 367 YKEQIGDTSAARAAFPESYIDS-DSRFIEKVTFKAN-MERRLG--NFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRL 442 (1071)
Q Consensus 367 ~e~~~g~~~~A~~~~~~al~~~-~p~~~~~w~~~a~-le~~~g--~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~ 442 (1071)
|++.+.-++++.++|++++.-. -|+..++|..|.. |..+.| .++.||.+|++|++..++. ..--+|+.||.+
T Consensus 520 fLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~----~aKtiyLlYA~l 595 (835)
T KOG2047|consen 520 FLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPE----HAKTIYLLYAKL 595 (835)
T ss_pred HHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHH----HHHHHHHHHHHH
Confidence 9999999999999999998322 3677889998865 555665 4799999999999974321 123588999999
Q ss_pred HHhhcCCHHHHHHHHHHHHhhCCCh--HHHHHHHHHHHHHcCCCCchhhHHHHHHHhhccCCcccccCChhhHHHHHHHH
Q 001481 443 TYTTTGSADNARDILIDGIKHVPNC--KLLLEELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLY 520 (1071)
Q Consensus 443 ~~~~~g~~e~Ar~i~e~al~~~P~~--~~lw~~~~~~e~~~g~~~~a~~~r~l~e~Al~~~~d~~~~l~~~~~~~lw~~~ 520 (1071)
++ +.|-...|..||++|....+.. .++|..|+.-....-..... |.+|++||. .||.....++...+
T Consensus 596 EE-e~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~T---R~iYekaIe-------~Lp~~~~r~mclrF 664 (835)
T KOG2047|consen 596 EE-EHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRT---REIYEKAIE-------SLPDSKAREMCLRF 664 (835)
T ss_pred HH-HhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCccc---HHHHHHHHH-------hCChHHHHHHHHHH
Confidence 98 8899999999999998876643 36788888665544334443 589999996 56777888889999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCcc
Q 001481 521 LQQFLDLCGTIHDIRNAWNQHIKLFPHTVR 550 (1071)
Q Consensus 521 l~~~e~~~G~~e~a~~~~~ra~~~~p~~~~ 550 (1071)
. +||...|.++.|+.+|.-+-++|+.+..
T Consensus 665 A-dlEtklGEidRARaIya~~sq~~dPr~~ 693 (835)
T KOG2047|consen 665 A-DLETKLGEIDRARAIYAHGSQICDPRVT 693 (835)
T ss_pred H-HHhhhhhhHHHHHHHHHhhhhcCCCcCC
Confidence 9 9999999999999999999888866544
No 10
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.97 E-value=7.5e-29 Score=275.71 Aligned_cols=385 Identities=15% Similarity=0.153 Sum_probs=329.4
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcC
Q 001481 25 GLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSAT 104 (1071)
Q Consensus 25 ~le~al~~nP~d~~~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P~s~~lW~~~a~~e~~~~~~e~A~~lferAL~~~P 104 (1071)
.-..+|+++|.-.+.+-.+++.++.. |++..|...|+.+++..|...+.|+.++......|+.+.|..+|-.||..+|
T Consensus 104 ~~~~a~r~~~q~ae~ysn~aN~~ker--g~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP 181 (966)
T KOG4626|consen 104 GSLLAIRKNPQGAEAYSNLANILKER--GQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNP 181 (966)
T ss_pred hhhhhhhccchHHHHHHHHHHHHHHh--chHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCc
Confidence 45788999999999999999999888 9999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhccCCccHHHHHH
Q 001481 105 YSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYD 184 (1071)
Q Consensus 105 ~s~~lW~~y~~~~~~~~~~~e~ar~l~erAL~~~~~~~~s~~lW~~yi~fe~~~~~~~~a~~iy~ral~~p~~~l~~~~~ 184 (1071)
..+........++... |.+++|...|-+|++.-|. -...|....-.....|++-.++.-|++++++...-+..++.
T Consensus 182 ~l~ca~s~lgnLlka~-Grl~ea~~cYlkAi~~qp~---fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiN 257 (966)
T KOG4626|consen 182 DLYCARSDLGNLLKAE-GRLEEAKACYLKAIETQPC---FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYIN 257 (966)
T ss_pred chhhhhcchhHHHHhh-cccchhHHHHHHHHhhCCc---eeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhh
Confidence 9988888888887777 9999999999999998774 34678888888888888888888999998864332221111
Q ss_pred HHHHHHHhHHHhhhhhchhhHHHHHHHhhcCCccCCcccchhhHHHhhhcCcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001481 185 SFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLD 264 (1071)
Q Consensus 185 ~~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~i~~~~d~~~~~~~a~~l~~~~~~~~~~y~~a~~~~ 264 (1071)
....|.+++...
T Consensus 258 --------------------------------------------------------------------LGnV~ke~~~~d 269 (966)
T KOG4626|consen 258 --------------------------------------------------------------------LGNVYKEARIFD 269 (966)
T ss_pred --------------------------------------------------------------------HHHHHHHHhcch
Confidence 011133334444
Q ss_pred HHHHHHHHHhcccCcCCCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCHHHHHH
Q 001481 265 EKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASY 344 (1071)
Q Consensus 265 ~~~~~fE~ai~~~~~~~~~~~p~~~~~W~~y~~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~ 344 (1071)
+++..|++++. +.|+...++-+++..+.+.|.++.|+..|+|||...|++++++.++|..+...|+..+|..
T Consensus 270 ~Avs~Y~rAl~--------lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~ 341 (966)
T KOG4626|consen 270 RAVSCYLRALN--------LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVD 341 (966)
T ss_pred HHHHHHHHHHh--------cCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHH
Confidence 55566777664 4567777777778777889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccchHHHHHHHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q 001481 345 ALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAA 424 (1071)
Q Consensus 345 il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~~A~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~ 424 (1071)
.|.+|+.+ .+..++....++.++.+.|.+++|..+|.+++ ++.|++..++.+++.++...|++++|+.+|++||.+
T Consensus 342 cYnkaL~l-~p~hadam~NLgni~~E~~~~e~A~~ly~~al-~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI-- 417 (966)
T KOG4626|consen 342 CYNKALRL-CPNHADAMNNLGNIYREQGKIEEATRLYLKAL-EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI-- 417 (966)
T ss_pred HHHHHHHh-CCccHHHHHHHHHHHHHhccchHHHHHHHHHH-hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--
Confidence 99999986 66777788888999999999999999999999 788999999999999999999999999999999998
Q ss_pred hhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCCCchhhHHHHHHHhhccCCc
Q 001481 425 EQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLLLEELIKFTMVHGGRSHISIVDAVISNALYSRPD 503 (1071)
Q Consensus 425 ~~~~~p~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~~~P~~~~lw~~~~~~e~~~g~~~~a~~~r~l~e~Al~~~~d 503 (1071)
.|+.+..+.++|..+. +.|+++.|..+|++|+..+|...+...+++.+.+..|+...+. ..|+.||...||
T Consensus 418 ----~P~fAda~~NmGnt~k-e~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI---~sY~~aLklkPD 488 (966)
T KOG4626|consen 418 ----KPTFADALSNMGNTYK-EMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAI---QSYRTALKLKPD 488 (966)
T ss_pred ----CchHHHHHHhcchHHH-HhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHH---HHHHHHHccCCC
Confidence 8999999999999987 9999999999999999999999999999999999889888775 889999977664
No 11
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.97 E-value=9.2e-29 Score=275.03 Aligned_cols=396 Identities=13% Similarity=0.127 Sum_probs=340.4
Q ss_pred CcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChhHHHHHHH
Q 001481 53 DDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFK 132 (1071)
Q Consensus 53 ~~~~~a~~vyeraL~~~P~s~~lW~~~a~~e~~~~~~e~A~~lferAL~~~P~s~~lW~~y~~~~~~~~~~~e~ar~l~e 132 (1071)
.++++-..--..+++..|...+.+-.++....+.|++.+|..+|+.|++..|+.++.|+.++.-+... ++.+.|-..|-
T Consensus 96 ~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~-~~~~~a~~~~~ 174 (966)
T KOG4626|consen 96 SRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQ-GDLELAVQCFF 174 (966)
T ss_pred cchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhc-CCCcccHHHHH
Confidence 34455545556788899999999999999999999999999999999999999999999999999888 99999999999
Q ss_pred HHHHhcCCCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhccCCccHHHHHHHHHHHHHhHHHhhhhhchhhHHHHHHHh
Q 001481 133 RALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELV 212 (1071)
Q Consensus 133 rAL~~~~~~~~s~~lW~~yi~fe~~~~~~~~a~~iy~ral~~p~~~l~~~~~~~~~~~~~~~e~l~~~~~~~~~~~~~~~ 212 (1071)
.||...|..+ ..-.....+.+..|..+++...|.++|..-. .+...|..
T Consensus 175 ~alqlnP~l~---ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp-~fAiawsn--------------------------- 223 (966)
T KOG4626|consen 175 EALQLNPDLY---CARSDLGNLLKAEGRLEEAKACYLKAIETQP-CFAIAWSN--------------------------- 223 (966)
T ss_pred HHHhcCcchh---hhhcchhHHHHhhcccchhHHHHHHHHhhCC-ceeeeehh---------------------------
Confidence 9999877532 2223445667778888888889988886321 11211111
Q ss_pred hcCCccCCcccchhhHHHhhhcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCCCCCChhHHHHH
Q 001481 213 LEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNW 292 (1071)
Q Consensus 213 ~~~~l~~~~~~~e~~~~i~~~~d~~~~~~~a~~l~~~~~~~~~~y~~a~~~~~~~~~fE~ai~~~~~~~~~~~p~~~~~W 292 (1071)
....|..+.+....+..||++++ ++|+-.+++
T Consensus 224 ----------------------------------------Lg~~f~~~Gei~~aiq~y~eAvk--------ldP~f~dAY 255 (966)
T KOG4626|consen 224 ----------------------------------------LGCVFNAQGEIWLAIQHYEEAVK--------LDPNFLDAY 255 (966)
T ss_pred ----------------------------------------cchHHhhcchHHHHHHHHHHhhc--------CCCcchHHH
Confidence 01123344455567778888876 789999999
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhC
Q 001481 293 HDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIG 372 (1071)
Q Consensus 293 ~~y~~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g 372 (1071)
++++..+++.+.+++|+.+|.||+...|.+..++-+++.+|...|.+|.|+..|+||+++ .|+.|+.+..+|..+...|
T Consensus 256 iNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~-~P~F~~Ay~NlanALkd~G 334 (966)
T KOG4626|consen 256 INLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL-QPNFPDAYNNLANALKDKG 334 (966)
T ss_pred hhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhc-CCCchHHHhHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999999999997 8899999999999999999
Q ss_pred CHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhhcCCHHH
Q 001481 373 DTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADN 452 (1071)
Q Consensus 373 ~~~~A~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~g~~e~ 452 (1071)
++.+|..+|.+|+ .+.|++++...++++++++.|.++.|..+|++|++. +|..+..+.++|.++. ..|++++
T Consensus 335 ~V~ea~~cYnkaL-~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v------~p~~aaa~nNLa~i~k-qqgnl~~ 406 (966)
T KOG4626|consen 335 SVTEAVDCYNKAL-RLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEV------FPEFAAAHNNLASIYK-QQGNLDD 406 (966)
T ss_pred chHHHHHHHHHHH-HhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhh------ChhhhhhhhhHHHHHH-hcccHHH
Confidence 9999999999999 889999999999999999999999999999999998 8999999999999997 9999999
Q ss_pred HHHHHHHHHhhCCChHHHHHHHHHHHHHcCCCCchhhHHHHHHHhhccCCcccccCChhhHHHHHHHHHHHHHHhcCCHH
Q 001481 453 ARDILIDGIKHVPNCKLLLEELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQQFLDLCGTIH 532 (1071)
Q Consensus 453 Ar~i~e~al~~~P~~~~lw~~~~~~e~~~g~~~~a~~~r~l~e~Al~~~~d~~~~l~~~~~~~lw~~~l~~~e~~~G~~e 532 (1071)
|..+|..||++.|...+.+.++...+...|+...+. ..|++||..+| ... +-..... .+.++.|++.
T Consensus 407 Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~---q~y~rAI~~nP--------t~A-eAhsNLa-si~kDsGni~ 473 (966)
T KOG4626|consen 407 AIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAI---QCYTRAIQINP--------TFA-EAHSNLA-SIYKDSGNIP 473 (966)
T ss_pred HHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHH---HHHHHHHhcCc--------HHH-HHHhhHH-HHhhccCCcH
Confidence 999999999999999999999999999999988775 99999998777 233 3333444 5778999999
Q ss_pred HHHHHHHHHHHhCCCCcc
Q 001481 533 DIRNAWNQHIKLFPHTVR 550 (1071)
Q Consensus 533 ~a~~~~~ra~~~~p~~~~ 550 (1071)
.|...|+.++++-|+...
T Consensus 474 ~AI~sY~~aLklkPDfpd 491 (966)
T KOG4626|consen 474 EAIQSYRTALKLKPDFPD 491 (966)
T ss_pred HHHHHHHHHHccCCCCch
Confidence 999999999999999766
No 12
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.94 E-value=4.7e-23 Score=265.89 Aligned_cols=477 Identities=13% Similarity=0.067 Sum_probs=347.8
Q ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 001481 23 KQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQS 102 (1071)
Q Consensus 23 ~~~le~al~~nP~d~~~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P~s~~lW~~~a~~e~~~~~~e~A~~lferAL~~ 102 (1071)
.+.|++++..+|.+...|..++..+... +++++|...|+++++..|.....+..++....+.+++++|+.+|++.+..
T Consensus 383 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 460 (899)
T TIGR02917 383 AEYLAKATELDPENAAARTQLGISKLSQ--GDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKK 460 (899)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhC--CChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 4578888888888888888888877766 78888888888888888888777777777777788888888888888888
Q ss_pred cCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhccCCccHHHH
Q 001481 103 ATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHY 182 (1071)
Q Consensus 103 ~P~s~~lW~~y~~~~~~~~~~~e~ar~l~erAL~~~~~~~~s~~lW~~yi~fe~~~~~~~~a~~iy~ral~~p~~~l~~~ 182 (1071)
.|.+..+|..++..+... +++++|+..|++++...|. ....|..++......++++.+.++|++++.....+...
T Consensus 461 ~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~- 535 (899)
T TIGR02917 461 QPDNASLHNLLGAIYLGK-GDLAKAREAFEKALSIEPD---FFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRA- 535 (899)
T ss_pred CCCCcHHHHHHHHHHHhC-CCHHHHHHHHHHHHhhCCC---cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHH-
Confidence 888888888887777776 7888888888888876554 34566667777777777888888888877533222211
Q ss_pred HHHHHHH---HHhHHHhhhhhc-----h-hhHHHH---HHHh-hcCCccCCcccchhhHHHhhhcCcchhHHHHHHHHHH
Q 001481 183 YDSFKKL---AGAWKEELECES-----D-SAMEFQ---SELV-LEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKY 249 (1071)
Q Consensus 183 ~~~~~~~---~~~~~e~l~~~~-----~-~~~~~~---~~~~-~~~~l~~~~~~~e~~~~i~~~~d~~~~~~~a~~l~~~ 249 (1071)
+..+... .+..++++..-. . ...... .... ..+. ..+....++..++..+.. ...
T Consensus 536 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~A~~~~~~~~~~~~~~------~~~ 603 (899)
T TIGR02917 536 ILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQ------LKKALAILNEAADAAPDS------PEA 603 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCC------HHHHHHHHHHHHHcCCCC------HHH
Confidence 1111111 111111111000 0 000000 0000 0000 000000111111100000 011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCcCCCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHhhcCCCCCHHHHHHH
Q 001481 250 RFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRY 329 (1071)
Q Consensus 250 ~~~~~~~y~~a~~~~~~~~~fE~ai~~~~~~~~~~~p~~~~~W~~y~~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~y 329 (1071)
+......|.........+..|+.++. ..|.+...|..++..+...|++++|..+|++++..+|.+...|..+
T Consensus 604 ~~~l~~~~~~~~~~~~A~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 675 (899)
T TIGR02917 604 WLMLGRAQLAAGDLNKAVSSFKKLLA--------LQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGL 675 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--------hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 11122233333444455566666654 3466677899999999999999999999999999999999999999
Q ss_pred HHHHHhhCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCH
Q 001481 330 VDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNF 409 (1071)
Q Consensus 330 a~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~~A~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~ 409 (1071)
+.++...|++++|..+++++... .+..+.++...+.++...|++++|...|.+++ ...|+. .++..++.++.+.|++
T Consensus 676 ~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~-~~~~~~-~~~~~l~~~~~~~g~~ 752 (899)
T TIGR02917 676 AQLLLAAKRTESAKKIAKSLQKQ-HPKAALGFELEGDLYLRQKDYPAAIQAYRKAL-KRAPSS-QNAIKLHRALLASGNT 752 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhh-CcCChHHHHHHHHHHHHCCCHHHHHHHHHHHH-hhCCCc-hHHHHHHHHHHHCCCH
Confidence 99999999999999999998876 56677788888999999999999999999998 556655 6788899999999999
Q ss_pred HHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCCCchhh
Q 001481 410 VAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLLLEELIKFTMVHGGRSHISI 489 (1071)
Q Consensus 410 ~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~~~P~~~~lw~~~~~~e~~~g~~~~a~~ 489 (1071)
++|...|+++++. .|.+..++..+|.++. ..|++++|..+|+++++.+|++..++..++.+....|+ .++
T Consensus 753 ~~A~~~~~~~l~~------~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A-- 822 (899)
T TIGR02917 753 AEAVKTLEAWLKT------HPNDAVLRTALAELYL-AQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRA-- 822 (899)
T ss_pred HHHHHHHHHHHHh------CCCCHHHHHHHHHHHH-HCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHH--
Confidence 9999999999998 7888999999999988 99999999999999999999999999999999988888 544
Q ss_pred HHHHHHHhhccCCcccccCChhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcc
Q 001481 490 VDAVISNALYSRPDVLKVFSLEDVEDISSLYLQQFLDLCGTIHDIRNAWNQHIKLFPHTVR 550 (1071)
Q Consensus 490 ~r~l~e~Al~~~~d~~~~l~~~~~~~lw~~~l~~~e~~~G~~e~a~~~~~ra~~~~p~~~~ 550 (1071)
...+++++...|+ ...+|..+. .+....|+++.|...++++++..|....
T Consensus 823 -~~~~~~~~~~~~~---------~~~~~~~~~-~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 872 (899)
T TIGR02917 823 -LEYAEKALKLAPN---------IPAILDTLG-WLLVEKGEADRALPLLRKAVNIAPEAAA 872 (899)
T ss_pred -HHHHHHHHhhCCC---------CcHHHHHHH-HHHHHcCCHHHHHHHHHHHHhhCCCChH
Confidence 5899999976552 245677777 8888999999999999999999987443
No 13
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=5.1e-24 Score=246.58 Aligned_cols=438 Identities=18% Similarity=0.226 Sum_probs=324.3
Q ss_pred chHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh---CCHHHHHHHHHH
Q 001481 22 GKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARL---CSIDKVVEVFER 98 (1071)
Q Consensus 22 ~~~~le~al~~nP~d~~~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P~s~~lW~~~a~~e~~~---~~~e~A~~lfer 98 (1071)
.+..++..+..|++++.....||.++++. +++++.+.....+.+++|.++.+|+.|+..+... ++.+++..+|++
T Consensus 98 ei~t~~ee~ai~~y~~~~~v~Li~llrk~--~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ek 175 (881)
T KOG0128|consen 98 EIRTLEEELAINSYKYAQMVQLIGLLRKL--GDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEK 175 (881)
T ss_pred HHHHHHHHhcccccchHHHHHHHHHHHHh--cchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHH
Confidence 35588999999999999999999999998 9999999999999999999999999999988654 567899999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHhhC------CChhHHHHHHHHHHHhcCCCCC-chHHHHHHHHHHHHcc---CHHHHHHHH
Q 001481 99 AVQSATYSVDVWFHYCSLSMSTF------EDPNDVRRLFKRALSFVGKDYL-CHTMWDKYIEFEISQQ---RWSSLAQIF 168 (1071)
Q Consensus 99 AL~~~P~s~~lW~~y~~~~~~~~------~~~e~ar~l~erAL~~~~~~~~-s~~lW~~yi~fe~~~~---~~~~a~~iy 168 (1071)
||.. ..++.||..|+.|..... ++++..|.+|++||..+|.+.. ...||.+|++|+...- ..+.+.++|
T Consensus 176 al~d-y~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~ 254 (881)
T KOG0128|consen 176 ALGD-YNSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALF 254 (881)
T ss_pred Hhcc-cccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 9998 589999999999987643 4688999999999999998764 5599999999998642 235688889
Q ss_pred HHHhccCCccHHHHHHHHHHHHHhHHHhhhhhchhhHHHHHHHhhcCCccCCcccchhhHHHhhhcCcchhHHHHHHHHH
Q 001481 169 VQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQK 248 (1071)
Q Consensus 169 ~ral~~p~~~l~~~~~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~i~~~~d~~~~~~~a~~l~~ 248 (1071)
.+.++.|.+ +......|..+.+..- . +.+
T Consensus 255 ~~el~~~~D-~~~~~~~~~~~sk~h~--------------~-------------~~~----------------------- 283 (881)
T KOG0128|consen 255 VRELKQPLD-EDTRGWDLSEQSKAHV--------------Y-------------DVE----------------------- 283 (881)
T ss_pred HHHHhccch-hhhhHHHHHHHHhcch--------------H-------------HHH-----------------------
Confidence 999988833 2222222222221100 0 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCCCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHhhcCCCCCHHHHHH
Q 001481 249 YRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMR 328 (1071)
Q Consensus 249 ~~~~~~~~y~~a~~~~~~~~~fE~ai~~~~~~~~~~~p~~~~~W~~y~~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ 328 (1071)
....+..+......+..||+.+. ..+.....|+.|++|++..|+..++...++|++...+.+.++|+.
T Consensus 284 ----~~~~~~a~~~l~~~~~~~e~~~q--------~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~~~~wi~ 351 (881)
T KOG0128|consen 284 ----TKKLDDALKNLAKILFKFERLVQ--------KEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLDRALWIG 351 (881)
T ss_pred ----hccHHHHHHHHHHHHHHHHHHhh--------hhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccHHHHhh
Confidence 00001111122222334444443 356667899999999999999999999999999999999999999
Q ss_pred HHHHHHhh-CCHHHHHHHHHHHHHHhhccchHHHHHHHHHH---HHhC-CHHHHHHHHHHHhhccChhhHHHHHHHHHHH
Q 001481 329 YVDFMESK-GGREIASYALDRATQIFLKRLPVIHLFNARYK---EQIG-DTSAARAAFPESYIDSDSRFIEKVTFKANME 403 (1071)
Q Consensus 329 ya~~l~~~-g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e---~~~g-~~~~A~~~~~~al~~~~p~~~~~w~~~a~le 403 (1071)
|+.++-.. +-.+.+..++.||+.. ||+....|.+.+ ++.+ ........+.+++. ....+++.+..+.
T Consensus 352 y~~~~d~eLkv~~~~~~~~~ra~R~----cp~tgdL~~rallAleR~re~~~vI~~~l~~~ls----~~~~l~~~~~~~r 423 (881)
T KOG0128|consen 352 YGVYLDTELKVPQRGVSVHPRAVRS----CPWTGDLWKRALLALERNREEITVIVQNLEKDLS----MTVELHNDYLAYR 423 (881)
T ss_pred hhhhcccccccccccccccchhhcC----CchHHHHHHHHHHHHHhcCcchhhHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 99887543 3335667788888875 775444444332 2322 22333444555542 2233455555544
Q ss_pred HHcC------CHHHHHHHHHHHHHHHhhhccC--CCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCChHH-HHHHH
Q 001481 404 RRLG------NFVAACDTYKEALETAAEQRKF--HTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKL-LLEEL 474 (1071)
Q Consensus 404 ~~~g------~~~~A~~~y~~Al~~~~~~~~~--p~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~~~P~~~~-lw~~~ 474 (1071)
++.+ +++..++.|..|.+.+...... .....+.-.||.++...+++.+.||.||...+.....+.. .|+.|
T Consensus 424 r~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty~~~~iag~Wle~ 503 (881)
T KOG0128|consen 424 RRCTNIIDSQDYSSLRAAFNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMTYGGGSIAGKWLEA 503 (881)
T ss_pred HhhcccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhccccCCcchHHHHHHHH
Confidence 5444 4677889999999988765543 2345678899999998899999999999999987666666 99999
Q ss_pred HHHHHHcCCCCchhhHHHHHHHhhccCCcccccCChhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001481 475 IKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQQFLDLCGTIHDIRNAWNQHIK 543 (1071)
Q Consensus 475 ~~~e~~~g~~~~a~~~r~l~e~Al~~~~d~~~~l~~~~~~~lw~~~l~~~e~~~G~~e~a~~~~~ra~~ 543 (1071)
++++..+|+...+| .++++|+.. ...+++...+.+.|. +||+.+|+++.+-.+-.+.+.
T Consensus 504 ~~lE~~~g~~~~~R---~~~R~ay~~------~~~~~~~~ev~~~~~-r~Ere~gtl~~~~~~~~~~~p 562 (881)
T KOG0128|consen 504 INLEREYGDGPSAR---KVLRKAYSQ------VVDPEDALEVLEFFR-RFEREYGTLESFDLCPEKVLP 562 (881)
T ss_pred HhHHHHhCCchhHH---HHHHHHHhc------CcCchhHHHHHHHHH-HHHhccccHHHHhhhHHhhcc
Confidence 99999999999885 799999863 445667889999999 999999999988777655443
No 14
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.94 E-value=8.3e-23 Score=263.64 Aligned_cols=480 Identities=13% Similarity=0.083 Sum_probs=272.6
Q ss_pred chHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 001481 22 GKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQ 101 (1071)
Q Consensus 22 ~~~~le~al~~nP~d~~~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P~s~~lW~~~a~~e~~~~~~e~A~~lferAL~ 101 (1071)
..+.|++++..+|.+...|..++..+... +++++|..+++++++.+|.+...|...+.++...|++++|..+|++++.
T Consensus 144 A~~~~~~a~~~~~~~~~~~~~la~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 221 (899)
T TIGR02917 144 AQKSYEQALAIDPRSLYAKLGLAQLALAE--NRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIA 221 (899)
T ss_pred HHHHHHHHHhcCCCChhhHHHHHHHHHHC--CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 34578889999999999999999988877 8999999999999999999999999999999999999999999999999
Q ss_pred hcCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhccCCccHHH
Q 001481 102 SATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHH 181 (1071)
Q Consensus 102 ~~P~s~~lW~~y~~~~~~~~~~~e~ar~l~erAL~~~~~~~~s~~lW~~yi~fe~~~~~~~~a~~iy~ral~~p~~~l~~ 181 (1071)
..|.+..+|...+..+... +++++|...|++++...+.+. ..+...+.+....++++.+..+|++++.........
T Consensus 222 ~~p~~~~~~~~~~~~~~~~-g~~~~A~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~ 297 (899)
T TIGR02917 222 LRPNNPAVLLALATILIEA-GEFEEAEKHADALLKKAPNSP---LAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPA 297 (899)
T ss_pred hCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCc---hHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhH
Confidence 9999999999999888888 999999999999998776542 233333334445678899999999988643332211
Q ss_pred HHH---------HHHHHHHhHHHhhhhhchh--hHHHHHHH-hhcCCccCCcccchhhHHHhhhcCcchhHHHHHHHHHH
Q 001481 182 YYD---------SFKKLAGAWKEELECESDS--AMEFQSEL-VLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKY 249 (1071)
Q Consensus 182 ~~~---------~~~~~~~~~~e~l~~~~~~--~~~~~~~~-~~~~~l~~~~~~~e~~~~i~~~~d~~~~~~~a~~l~~~ 249 (1071)
.+. .|......+...+...... ........ ...+.. .+....+...++..+.... .
T Consensus 298 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~------~~A~~~~~~~~~~~~~~~~------~ 365 (899)
T TIGR02917 298 LLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRV------DEAIATLSPALGLDPDDPA------A 365 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCH------HHHHHHHHHHHhcCCCCHH------H
Confidence 111 1111111111111100000 00000000 000000 0000011111111000000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCcCCCCCChhHHHHHHHHHHHHH-----------------------------
Q 001481 250 RFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAE----------------------------- 300 (1071)
Q Consensus 250 ~~~~~~~y~~a~~~~~~~~~fE~ai~~~~~~~~~~~p~~~~~W~~y~~~~~----------------------------- 300 (1071)
+......|.+.....+....|+++++ ..|+....|..++..+.
T Consensus 366 ~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 437 (899)
T TIGR02917 366 LSLLGEAYLALGDFEKAAEYLAKATE--------LDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLL 437 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHh--------cCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHH
Confidence 00011111111112222223333322 12333334444444444
Q ss_pred -----HhCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhCCHH
Q 001481 301 -----KQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTS 375 (1071)
Q Consensus 301 -----~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~ 375 (1071)
..|++++++.++++.+...|.+..+|..++..+...|++++|+.+|+++++. .|..+.+++.++.++...|+++
T Consensus 438 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~la~~~~~~g~~~ 516 (899)
T TIGR02917 438 ILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSI-EPDFFPAAANLARIDIQEGNPD 516 (899)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhh-CCCcHHHHHHHHHHHHHCCCHH
Confidence 4444445555555554445555555555555555555555555556555554 3444445555555555556666
Q ss_pred HHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhhcCCHHHHHH
Q 001481 376 AARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARD 455 (1071)
Q Consensus 376 ~A~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~g~~e~Ar~ 455 (1071)
+|+.+|++++ ...|++..+|..++.++.+.|++++|+.+|++++.. .+.....++.++.++. ..|++++|..
T Consensus 517 ~A~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~-~~~~~~~A~~ 588 (899)
T TIGR02917 517 DAIQRFEKVL-TIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAEL------NPQEIEPALALAQYYL-GKGQLKKALA 588 (899)
T ss_pred HHHHHHHHHH-HhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CccchhHHHHHHHHHH-HCCCHHHHHH
Confidence 6666666555 344555555555565555566666666666666555 4455555555666555 5666666666
Q ss_pred HHHHHHhhCCChHHHHHHHHHHHHHcCCCCchhhHHHHHHHhhccCCcccccCChhhHHHHHHHHHHHHHHhcCCHHHHH
Q 001481 456 ILIDGIKHVPNCKLLLEELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQQFLDLCGTIHDIR 535 (1071)
Q Consensus 456 i~e~al~~~P~~~~lw~~~~~~e~~~g~~~~a~~~r~l~e~Al~~~~d~~~~l~~~~~~~lw~~~l~~~e~~~G~~e~a~ 535 (1071)
+|+++++..|.+..+|..++..+...|+++.+. ..|++++...|+ ....|..++ .+....|+.+.|.
T Consensus 589 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~---~~~~~~~~~~~~---------~~~~~~~l~-~~~~~~~~~~~A~ 655 (899)
T TIGR02917 589 ILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAV---SSFKKLLALQPD---------SALALLLLA-DAYAVMKNYAKAI 655 (899)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHH---HHHHHHHHhCCC---------ChHHHHHHH-HHHHHcCCHHHHH
Confidence 666666666666666666666666666555543 556666543331 123444455 5555566666666
Q ss_pred HHHHHHHHhCCCCc
Q 001481 536 NAWNQHIKLFPHTV 549 (1071)
Q Consensus 536 ~~~~ra~~~~p~~~ 549 (1071)
.+|.++++..|+..
T Consensus 656 ~~~~~~~~~~~~~~ 669 (899)
T TIGR02917 656 TSLKRALELKPDNT 669 (899)
T ss_pred HHHHHHHhcCCCCH
Confidence 66666666665543
No 15
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.93 E-value=1e-21 Score=258.37 Aligned_cols=481 Identities=12% Similarity=0.044 Sum_probs=334.5
Q ss_pred chHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHCCCCHHHH----------------HHHHHHHHH
Q 001481 22 GKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYW----------------RKYADHKAR 85 (1071)
Q Consensus 22 ~~~~le~al~~nP~d~~~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P~s~~lW----------------~~~a~~e~~ 85 (1071)
..+.|.+.+..+|+|.+++...+.++... ++.++|.+.++++++..|.+..+| +..+++...
T Consensus 47 a~~~l~kl~~~~p~~p~~~~~~~~~~l~~--g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~ 124 (1157)
T PRK11447 47 VRQSLYRLELIDPNNPDVIAARFRLLLRQ--GDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLAT 124 (1157)
T ss_pred HHHHHHHHHccCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHh
Confidence 34589999999999999999999988877 999999999999999999998876 445556778
Q ss_pred hCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHccCHHHHH
Q 001481 86 LCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLA 165 (1071)
Q Consensus 86 ~~~~e~A~~lferAL~~~P~s~~lW~~y~~~~~~~~~~~e~ar~l~erAL~~~~~~~~s~~lW~~yi~fe~~~~~~~~a~ 165 (1071)
.|++++|..+|++++...|.+..+-..|...+....++.++|++.|+++++..|. ...+|..++.+....++.+++.
T Consensus 125 ~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~---~~~~~~~LA~ll~~~g~~~eAl 201 (1157)
T PRK11447 125 TGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPG---NTGLRNTLALLLFSSGRRDEGF 201 (1157)
T ss_pred CCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHccCCHHHHH
Confidence 8999999999999999999888766666655544448899999999999998776 4578889999998889999999
Q ss_pred HHHHHHhccCCccH--HHHHHHHHHHHHhHHHhhhhhchhhHHHHHHHhhcCCccCCcccchhh---HHHhhhcC--cch
Q 001481 166 QIFVQTLRFPSKKL--HHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETS---SVIKDLLD--PSV 238 (1071)
Q Consensus 166 ~iy~ral~~p~~~l--~~~~~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~---~~i~~~~d--~~~ 238 (1071)
.+|++++..+.... ...|.....+....... ...+...+. . ..+..++. ..+..... ..+
T Consensus 202 ~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~--------~~~l~~~l~--~---~p~~~~~~~A~~~L~~~~~~~~dp 268 (1157)
T PRK11447 202 AVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDAS--------VAALQKYLQ--V---FSDGDSVAAARSQLAEQQKQLADP 268 (1157)
T ss_pred HHHHHHhhCCCchHHHHHHHHHHHhccCCChhh--------HHHHHHHHH--H---CCCchHHHHHHHHHHHHHHhccCc
Confidence 99999987654321 11111110000000000 000000000 0 00000000 00000000 000
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCCCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHhhcC
Q 001481 239 DLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIP 318 (1071)
Q Consensus 239 ~~~~a~~l~~~~~~~~~~y~~a~~~~~~~~~fE~ai~~~~~~~~~~~p~~~~~W~~y~~~~~~~g~~~~a~~~yerAL~~ 318 (1071)
.+. .+ .....+....+..+++..|+++++ .+|++..+|..++..+...|++++|+..|++++..
T Consensus 269 ~~~-~~-------~~G~~~~~~g~~~~A~~~l~~aL~--------~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~ 332 (1157)
T PRK11447 269 AFR-AR-------AQGLAAVDSGQGGKAIPELQQAVR--------ANPKDSEALGALGQAYSQQGDRARAVAQFEKALAL 332 (1157)
T ss_pred chH-HH-------HHHHHHHHCCCHHHHHHHHHHHHH--------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 000 00 001112222233445556666664 46777889999999999999999999999999998
Q ss_pred CCCCHH--HH------------HHHHHHHHhhCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 001481 319 CADYPE--FW------------MRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPES 384 (1071)
Q Consensus 319 ~p~~~~--lW------------~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~~A~~~~~~a 384 (1071)
.|++.. .| +..+..+...|++++|+..|++++.+ .|.++.+++.++.++...|++++|+..|+++
T Consensus 333 ~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~-~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~a 411 (1157)
T PRK11447 333 DPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQV-DNTDSYAVLGLGDVAMARKDYAAAERYYQQA 411 (1157)
T ss_pred CCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 887642 23 23355667889999999999999987 6777788888899999999999999999999
Q ss_pred hhccChhhHHHHHHHHH------------------------------------------HHHHcCCHHHHHHHHHHHHHH
Q 001481 385 YIDSDSRFIEKVTFKAN------------------------------------------MERRLGNFVAACDTYKEALET 422 (1071)
Q Consensus 385 l~~~~p~~~~~w~~~a~------------------------------------------le~~~g~~~~A~~~y~~Al~~ 422 (1071)
+ .++|++..++..++. .+...|++++|+.+|+++++.
T Consensus 412 L-~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~ 490 (1157)
T PRK11447 412 L-RMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL 490 (1157)
T ss_pred H-HhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 8 667766655544433 334568999999999999998
Q ss_pred HhhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCCCchhhHHHHHHHhhccCC
Q 001481 423 AAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLLLEELIKFTMVHGGRSHISIVDAVISNALYSRP 502 (1071)
Q Consensus 423 ~~~~~~~p~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~~~P~~~~lw~~~~~~e~~~g~~~~a~~~r~l~e~Al~~~~ 502 (1071)
.|.++.+++.+|.++. ..|++++|+.+|+++++..|++...+..++.++...++.+.+. ..++++.....
T Consensus 491 ------~P~~~~~~~~LA~~~~-~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al---~~l~~l~~~~~ 560 (1157)
T PRK11447 491 ------DPGSVWLTYRLAQDLR-QAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAAL---AHLNTLPRAQW 560 (1157)
T ss_pred ------CCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHH---HHHHhCCchhc
Confidence 7888999999999988 9999999999999999999999988877777766666554442 33332110000
Q ss_pred c-------------------------c-------cccCChhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcc
Q 001481 503 D-------------------------V-------LKVFSLEDVEDISSLYLQQFLDLCGTIHDIRNAWNQHIKLFPHTVR 550 (1071)
Q Consensus 503 d-------------------------~-------~~~l~~~~~~~lw~~~l~~~e~~~G~~e~a~~~~~ra~~~~p~~~~ 550 (1071)
+ + .-...+. ...++.... .+....|+.+.|..+|+++++..|++..
T Consensus 561 ~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~-~~~~~~~La-~~~~~~g~~~~A~~~y~~al~~~P~~~~ 638 (1157)
T PRK11447 561 NSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPP-STRIDLTLA-DWAQQRGDYAAARAAYQRVLTREPGNAD 638 (1157)
T ss_pred ChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCC-CchHHHHHH-HHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 0 0 0000011 123556666 7778889999999999999999998654
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.93 E-value=1.5e-21 Score=241.35 Aligned_cols=438 Identities=12% Similarity=0.075 Sum_probs=316.3
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 001481 39 EWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSM 118 (1071)
Q Consensus 39 ~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P~s~~lW~~~a~~e~~~~~~e~A~~lferAL~~~P~s~~lW~~y~~~~~ 118 (1071)
.+...+..+.+. +++++|...|+++++..|+ ..+|...+..+.+.+++++|+..|++||+..|.+.+.|...+..+.
T Consensus 129 ~~k~~G~~~~~~--~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRN--KDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 345666666666 9999999999999999996 6789999999999999999999999999999999999999999988
Q ss_pred hhCCChhHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhccCCcc--HHHHHHHHHHHHHhHHHh
Q 001481 119 STFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKK--LHHYYDSFKKLAGAWKEE 196 (1071)
Q Consensus 119 ~~~~~~e~ar~l~erAL~~~~~~~~s~~lW~~yi~fe~~~~~~~~a~~iy~ral~~p~~~--l~~~~~~~~~~~~~~~e~ 196 (1071)
.. +++++|..-|..++...+... ..+-..+..... ..+...+..++...... .+.....|...... .
T Consensus 206 ~l-g~~~eA~~~~~~~~~~~~~~~--~~~~~~~~~~l~-----~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~ 274 (615)
T TIGR00990 206 GL-GKYADALLDLTASCIIDGFRN--EQSAQAVERLLK-----KFAESKAKEILETKPENLPSVTFVGNYLQSFRP---K 274 (615)
T ss_pred Hc-CCHHHHHHHHHHHHHhCCCcc--HHHHHHHHHHHH-----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccC---C
Confidence 88 999999999987766544321 111111111111 11222223333221111 11111111110000 0
Q ss_pred hhhhchhhHHHHHHHhhcCCccCCcccchhhHHHhhhcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 001481 197 LECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRR 276 (1071)
Q Consensus 197 l~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~i~~~~d~~~~~~~a~~l~~~~~~~~~~y~~a~~~~~~~~~fE~ai~~ 276 (1071)
.. . ..+ .. ..+.. .+.... ...+ ..............+....|+.++..
T Consensus 275 ~~------~----~~~-~~-------~~~~~------~~~~~~------~~~l-~~~~~e~~~~~~y~~A~~~~~~al~~ 323 (615)
T TIGR00990 275 PR------P----AGL-ED-------SNELD------EETGNG------QLQL-GLKSPESKADESYEEAARAFEKALDL 323 (615)
T ss_pred cc------h----hhh-hc-------ccccc------cccccc------hHHH-HHHHHHhhhhhhHHHHHHHHHHHHhc
Confidence 00 0 000 00 00000 000000 0000 00000000111222344456666642
Q ss_pred cCcCCCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhcc
Q 001481 277 PYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKR 356 (1071)
Q Consensus 277 ~~~~~~~~~p~~~~~W~~y~~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~ 356 (1071)
....|.....|..++.++...|++++|+..|++++...|.+...|+.++..+...|++++|+..|+++++. .|.
T Consensus 324 -----~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~p~ 397 (615)
T TIGR00990 324 -----GKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKL-NSE 397 (615)
T ss_pred -----CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCC
Confidence 12457777889999999999999999999999999999999999999999999999999999999999997 788
Q ss_pred chHHHHHHHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHH
Q 001481 357 LPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLY 436 (1071)
Q Consensus 357 ~p~i~~~~a~~e~~~g~~~~A~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~ 436 (1071)
++.+|+..+.++...|++++|+..|++++ .+.|++..+|+.++.++.+.|++++|+.+|+++++. +|..+.+|
T Consensus 398 ~~~~~~~lg~~~~~~g~~~~A~~~~~kal-~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~------~P~~~~~~ 470 (615)
T TIGR00990 398 DPDIYYHRAQLHFIKGEFAQAGKDYQKSI-DLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN------FPEAPDVY 470 (615)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCChHHH
Confidence 88999999999999999999999999999 789999999999999999999999999999999998 78999999
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHhhCCChHHHH-------HHHHHHHHHcCCCCchhhHHHHHHHhhccCCcccccCC
Q 001481 437 VQFSRLTYTTTGSADNARDILIDGIKHVPNCKLLL-------EELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFS 509 (1071)
Q Consensus 437 ~~~A~~~~~~~g~~e~Ar~i~e~al~~~P~~~~lw-------~~~~~~e~~~g~~~~a~~~r~l~e~Al~~~~d~~~~l~ 509 (1071)
..+|.++. ..|++++|++.|+++++..|.....| ...+.+....|+++.+ ..+|++|+..+|+
T Consensus 471 ~~lg~~~~-~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA---~~~~~kAl~l~p~------ 540 (615)
T TIGR00990 471 NYYGELLL-DQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEA---ENLCEKALIIDPE------ 540 (615)
T ss_pred HHHHHHHH-HccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHH---HHHHHHHHhcCCC------
Confidence 99999998 99999999999999999998753322 2222233335777666 4899999976552
Q ss_pred hhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 001481 510 LEDVEDISSLYLQQFLDLCGTIHDIRNAWNQHIKLFPHT 548 (1071)
Q Consensus 510 ~~~~~~lw~~~l~~~e~~~G~~e~a~~~~~ra~~~~p~~ 548 (1071)
....|...+ ++....|++++|...|++++++.+..
T Consensus 541 ---~~~a~~~la-~~~~~~g~~~eAi~~~e~A~~l~~~~ 575 (615)
T TIGR00990 541 ---CDIAVATMA-QLLLQQGDVDEALKLFERAAELARTE 575 (615)
T ss_pred ---cHHHHHHHH-HHHHHccCHHHHHHHHHHHHHHhccH
Confidence 234667777 88889999999999999999998753
No 17
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.92 E-value=2e-21 Score=255.46 Aligned_cols=442 Identities=11% Similarity=0.032 Sum_probs=323.5
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcCCCHH------------HHH
Q 001481 44 LSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVD------------VWF 111 (1071)
Q Consensus 44 i~~~~~~~~~~~~~a~~vyeraL~~~P~s~~lW~~~a~~e~~~~~~e~A~~lferAL~~~P~s~~------------lW~ 111 (1071)
+..+... +++++|...|+++++.+|.+..+|..++..+.+.+++++|+.+|+++++..|.+.. .|.
T Consensus 276 G~~~~~~--g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~ 353 (1157)
T PRK11447 276 GLAAVDS--GQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL 353 (1157)
T ss_pred HHHHHHC--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence 3334445 89999999999999999999999999999999999999999999999999887643 222
Q ss_pred H--HHHHHHhhCCChhHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhccCCccHHHHHHHHHHH
Q 001481 112 H--YCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKL 189 (1071)
Q Consensus 112 ~--y~~~~~~~~~~~e~ar~l~erAL~~~~~~~~s~~lW~~yi~fe~~~~~~~~a~~iy~ral~~p~~~l~~~~~~~~~~ 189 (1071)
. .+..+... +++++|+..|++|+...|.+ ...|...+.+....++++.+++.|++++.+...+...+.....-+
T Consensus 354 ~~~~g~~~~~~-g~~~eA~~~~~~Al~~~P~~---~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~ 429 (1157)
T PRK11447 354 LIQQGDAALKA-NNLAQAERLYQQARQVDNTD---SYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLY 429 (1157)
T ss_pred HHHHHHHHHHC-CCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 2 23444555 89999999999999987753 457777788888899999999999999975433322221111111
Q ss_pred H-HhHHHhhhhhchhhHHHHHHHhhcCCccCCcccchhhHHHhhhcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001481 190 A-GAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKIN 268 (1071)
Q Consensus 190 ~-~~~~e~l~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~i~~~~d~~~~~~~a~~l~~~~~~~~~~y~~a~~~~~~~~ 268 (1071)
. ...++++. .+ ..+.... ..... .. ...... ..+......+....+..+++.
T Consensus 430 ~~~~~~~A~~--------~l-~~l~~~~------~~~~~----~~-------~~~l~~-~~~~~~a~~~~~~g~~~eA~~ 482 (1157)
T PRK11447 430 RQQSPEKALA--------FI-ASLSASQ------RRSID----DI-------ERSLQN-DRLAQQAEALENQGKWAQAAE 482 (1157)
T ss_pred HhcCHHHHHH--------HH-HhCCHHH------HHHHH----HH-------HHHhhh-hHHHHHHHHHHHCCCHHHHHH
Confidence 0 11111111 00 0000000 00000 00 000000 000011122333334455566
Q ss_pred HHHHHhcccCcCCCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHH
Q 001481 269 CFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDR 348 (1071)
Q Consensus 269 ~fE~ai~~~~~~~~~~~p~~~~~W~~y~~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~r 348 (1071)
.|+++++ ++|++..++..++..+...|++++|+.+|++++...|.+.+.++.++.++...|+.++|+.+|++
T Consensus 483 ~~~~Al~--------~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~ 554 (1157)
T PRK11447 483 LQRQRLA--------LDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNT 554 (1157)
T ss_pred HHHHHHH--------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 6777765 56778889999999999999999999999999999999999999999999999999999999887
Q ss_pred HHHHhh-cc--------chHHHHHHHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001481 349 ATQIFL-KR--------LPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEA 419 (1071)
Q Consensus 349 Al~~~~-~~--------~p~i~~~~a~~e~~~g~~~~A~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~~y~~A 419 (1071)
+..... +. .....+..+..+...|++++|+.+++ ..|.+..+++.++.++.+.|++++|+.+|+++
T Consensus 555 l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~-----~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~a 629 (1157)
T PRK11447 555 LPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLR-----QQPPSTRIDLTLADWAQQRGDYAAARAAYQRV 629 (1157)
T ss_pred CCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHH-----hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 532100 00 01233455677788999999999877 25677888999999999999999999999999
Q ss_pred HHHHhhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCCCchhhHHHHHHHhhc
Q 001481 420 LETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLLLEELIKFTMVHGGRSHISIVDAVISNALY 499 (1071)
Q Consensus 420 l~~~~~~~~~p~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~~~P~~~~lw~~~~~~e~~~g~~~~a~~~r~l~e~Al~ 499 (1071)
++. .|.++.+++.+|.++. ..|++++|+++|+++++..|++..++..++.+....|+.+++. .+|++++.
T Consensus 630 l~~------~P~~~~a~~~la~~~~-~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~---~~~~~al~ 699 (1157)
T PRK11447 630 LTR------EPGNADARLGLIEVDI-AQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQ---RTFNRLIP 699 (1157)
T ss_pred HHh------CCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHH---HHHHHHhh
Confidence 998 7899999999999998 8999999999999999999999999999999999999988775 89999987
Q ss_pred cCCcccccCChhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 001481 500 SRPDVLKVFSLEDVEDISSLYLQQFLDLCGTIHDIRNAWNQHIKLF 545 (1071)
Q Consensus 500 ~~~d~~~~l~~~~~~~lw~~~l~~~e~~~G~~e~a~~~~~ra~~~~ 545 (1071)
..++. .+......++.... ++....|+.+.|...|++++...
T Consensus 700 ~~~~~---~~~~~~a~~~~~~a-~~~~~~G~~~~A~~~y~~Al~~~ 741 (1157)
T PRK11447 700 QAKSQ---PPSMESALVLRDAA-RFEAQTGQPQQALETYKDAMVAS 741 (1157)
T ss_pred hCccC---CcchhhHHHHHHHH-HHHHHcCCHHHHHHHHHHHHhhc
Confidence 54421 11111235666678 89999999999999999998744
No 18
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.90 E-value=4.7e-20 Score=228.09 Aligned_cols=420 Identities=10% Similarity=0.021 Sum_probs=286.7
Q ss_pred chHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 001481 22 GKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQ 101 (1071)
Q Consensus 22 ~~~~le~al~~nP~d~~~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P~s~~lW~~~a~~e~~~~~~e~A~~lferAL~ 101 (1071)
.++.|+++|+.+|+ ...|..++..+.+. +++++|...|+++++.+|.+.+.|...+..+...|++++|+..|..++.
T Consensus 146 Ai~~y~~al~~~p~-~~~~~n~a~~~~~l--~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~ 222 (615)
T TIGR00990 146 AIKLYSKAIECKPD-PVYYSNRAACHNAL--GDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCI 222 (615)
T ss_pred HHHHHHHHHhcCCc-hHHHHHHHHHHHHh--CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34578889999996 67899999988888 9999999999999999999999999999999999999999999988887
Q ss_pred hcCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhccCCc---c
Q 001481 102 SATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSK---K 178 (1071)
Q Consensus 102 ~~P~s~~lW~~y~~~~~~~~~~~e~ar~l~erAL~~~~~~~~s~~lW~~yi~fe~~~~~~~~a~~iy~ral~~p~~---~ 178 (1071)
..+........++.-.+. ..+...+.++++..+.... .|.....+...... ......+...+..... .
T Consensus 223 ~~~~~~~~~~~~~~~~l~-----~~a~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 293 (615)
T TIGR00990 223 IDGFRNEQSAQAVERLLK-----KFAESKAKEILETKPENLP---SVTFVGNYLQSFRP-KPRPAGLEDSNELDEETGNG 293 (615)
T ss_pred hCCCccHHHHHHHHHHHH-----HHHHHHHHHHHhcCCCCCC---CHHHHHHHHHHccC-Ccchhhhhcccccccccccc
Confidence 765544322222211111 1233444445554443322 23322232221110 0000111111111110 0
Q ss_pred HHHHHHHHH--HHHHhHHHhhhhhchhhHHHHHHHhhc-CCccCCcccchhhHHHhhhcCcchhHHHHHHHHHHHHHHHH
Q 001481 179 LHHYYDSFK--KLAGAWKEELECESDSAMEFQSELVLE-GEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQ 255 (1071)
Q Consensus 179 l~~~~~~~~--~~~~~~~e~l~~~~~~~~~~~~~~~~~-~~l~~~~~~~e~~~~i~~~~d~~~~~~~a~~l~~~~~~~~~ 255 (1071)
+......+. ...+.+++++. .+..+++ +.+ . +.. ...+.....
T Consensus 294 ~~~l~~~~~e~~~~~~y~~A~~---------~~~~al~~~~~----~---------------~~~------a~a~~~lg~ 339 (615)
T TIGR00990 294 QLQLGLKSPESKADESYEEAAR---------AFEKALDLGKL----G---------------EKE------AIALNLRGT 339 (615)
T ss_pred hHHHHHHHHHhhhhhhHHHHHH---------HHHHHHhcCCC----C---------------hhh------HHHHHHHHH
Confidence 000000000 00111111111 0111100 000 0 000 000011112
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCcCCCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh
Q 001481 256 IYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMES 335 (1071)
Q Consensus 256 ~y~~a~~~~~~~~~fE~ai~~~~~~~~~~~p~~~~~W~~y~~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~ 335 (1071)
+|....+..+++..|++++. ++|.....|..++..+...|++++|+..|++++..+|++.++|+.++.++..
T Consensus 340 ~~~~~g~~~eA~~~~~kal~--------l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~ 411 (615)
T TIGR00990 340 FKCLKGKHLEALADLSKSIE--------LDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFI 411 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHH--------cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 22222334445556666664 4677788999999999999999999999999999999999999999999999
Q ss_pred hCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHH
Q 001481 336 KGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDT 415 (1071)
Q Consensus 336 ~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~~A~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~~ 415 (1071)
.|++++|+..|++++.+ .|.+...|+.++.++...|++++|+..|.+++ ...|++..+|..++.++...|++++|++.
T Consensus 412 ~g~~~~A~~~~~kal~l-~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al-~~~P~~~~~~~~lg~~~~~~g~~~~A~~~ 489 (615)
T TIGR00990 412 KGEFAQAGKDYQKSIDL-DPDFIFSHIQLGVTQYKEGSIASSMATFRRCK-KNFPEAPDVYNYYGELLLDQNKFDEAIEK 489 (615)
T ss_pred cCCHHHHHHHHHHHHHc-CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCCCChHHHHHHHHHHHHccCHHHHHHH
Confidence 99999999999999997 67777888899999999999999999999999 67899999999999999999999999999
Q ss_pred HHHHHHHHhhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCCCchhhHHHHHH
Q 001481 416 YKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLLLEELIKFTMVHGGRSHISIVDAVIS 495 (1071)
Q Consensus 416 y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~~~P~~~~lw~~~~~~e~~~g~~~~a~~~r~l~e 495 (1071)
|++|+.+.+...........++..+.+++...|++++|+.+|+++++.+|++...|..++.++...|+.+.+. ..|+
T Consensus 490 ~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi---~~~e 566 (615)
T TIGR00990 490 FDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEAL---KLFE 566 (615)
T ss_pred HHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHH---HHHH
Confidence 9999998321110001112233444444435799999999999999999999999999999999999988875 8899
Q ss_pred Hhhcc
Q 001481 496 NALYS 500 (1071)
Q Consensus 496 ~Al~~ 500 (1071)
+|+..
T Consensus 567 ~A~~l 571 (615)
T TIGR00990 567 RAAEL 571 (615)
T ss_pred HHHHH
Confidence 99864
No 19
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.89 E-value=2.3e-19 Score=199.11 Aligned_cols=421 Identities=15% Similarity=0.207 Sum_probs=285.4
Q ss_pred CCCcchHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhC-CH----HHH
Q 001481 18 PVGFGKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLC-SI----DKV 92 (1071)
Q Consensus 18 ~~~~~~~~le~al~~nP~d~~~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P~s~~lW~~~a~~e~~~~-~~----e~A 92 (1071)
+.+-..+.+|+.+..+|.+..+|..+|+..-.. .+++...++|.|+|... .+.++|+.|+....+.+ +. +..
T Consensus 34 ~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~s--kdfe~VEkLF~RCLvkv-LnlDLW~lYl~YVR~~~~~~~~~r~~m 110 (656)
T KOG1914|consen 34 PIDKVRETYEQLVNVFPSSPRAWKLYIERELAS--KDFESVEKLFSRCLVKV-LNLDLWKLYLSYVRETKGKLFGYREKM 110 (656)
T ss_pred CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHH-hhHhHHHHHHHHHHHHccCcchHHHHH
Confidence 444456789999999999999999999976555 79999999999999866 67999999999876542 22 344
Q ss_pred HHHHHHHHHhc---CCCHHHHHHHHHHHHhhC--C------ChhHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHccCH
Q 001481 93 VEVFERAVQSA---TYSVDVWFHYCSLSMSTF--E------DPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRW 161 (1071)
Q Consensus 93 ~~lferAL~~~---P~s~~lW~~y~~~~~~~~--~------~~e~ar~l~erAL~~~~~~~~s~~lW~~yi~fe~~~~~~ 161 (1071)
...|+-++..+ +.+..||..|+.|+..-. | .++.+|++|.|||.. |.+. -..||..|..||.+.. .
T Consensus 111 ~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~t-Pm~n-lEkLW~DY~~fE~~IN-~ 187 (656)
T KOG1914|consen 111 VQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVT-PMHN-LEKLWKDYEAFEQEIN-I 187 (656)
T ss_pred HHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcC-cccc-HHHHHHHHHHHHHHHH-H
Confidence 45566666665 567789999999986532 2 467899999999964 5543 3699999999998652 2
Q ss_pred HHHHHHHHHHhccCCccHHHHHHHHHHHHHhHHHhhhhhchhhHHHHHHHhhcCCccCCcccc-----hhhHHHhhhcCc
Q 001481 162 SSLAQIFVQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDD-----ETSSVIKDLLDP 236 (1071)
Q Consensus 162 ~~a~~iy~ral~~p~~~l~~~~~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~l~~~~~~~-----e~~~~i~~~~d~ 236 (1071)
..++++.... ...+......|.++..-.. .+.. .+. .++...+.. ++|+.+-+|-..
T Consensus 188 ~tarK~i~e~----s~~Ym~AR~~~qel~~lt~-GL~r-~~~------------~vp~~~T~~e~~qv~~W~n~I~wEks 249 (656)
T KOG1914|consen 188 ITARKFIGER----SPEYMNARRVYQELQNLTR-GLNR-NAP------------AVPPKGTKDEIQQVELWKNWIKWEKS 249 (656)
T ss_pred HHHHHHHHhh----CHHHHHHHHHHHHHHHHHh-hhcc-cCC------------CCCCCCChHHHHHHHHHHHHHHHHhc
Confidence 2333332111 1111222222333222110 0100 000 000001111 111111111111
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCCCCCChhHHHHHHHHHHHHHHhCC------------
Q 001481 237 SVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGD------------ 304 (1071)
Q Consensus 237 ~~~~~~a~~l~~~~~~~~~~y~~a~~~~~~~~~fE~ai~~~~~~~~~~~p~~~~~W~~y~~~~~~~g~------------ 304 (1071)
.+-.+.. . +.-.-+-.-.||.++... +...++|..|..++...++
T Consensus 250 NpL~t~~----------~-----~~~~~Rv~yayeQ~ll~l--------~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~ 306 (656)
T KOG1914|consen 250 NPLRTLD----------G-----TMLTRRVMYAYEQCLLYL--------GYHPEIWYDYSMYLIEISDLLTEKGDVPDAK 306 (656)
T ss_pred CCccccc----------c-----cHHHHHHHHHHHHHHHHH--------hcCHHHHHHHHHHHHHhhHHHHHhcccccch
Confidence 1100000 0 000001112455554321 2345799999998876655
Q ss_pred --HHHHHHHHHHhhcC-CCCCHHHHHHHHHHHHhhCC---HHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhCCHHHHH
Q 001481 305 --FDWVVKLYERCLIP-CADYPEFWMRYVDFMESKGG---REIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAAR 378 (1071)
Q Consensus 305 --~~~a~~~yerAL~~-~p~~~~lW~~ya~~l~~~g~---~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~~A~ 378 (1071)
.+++..+|||++.. ...+.-+++.|+.+.+..-+ .+..-.++++++.+...+..-+|+.+.+|-.+..-+..||
T Consensus 307 ~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR 386 (656)
T KOG1914|consen 307 SLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAAR 386 (656)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHH
Confidence 67899999999963 45577889999998887755 7788899999998755555568899999999999999999
Q ss_pred HHHHHHhhccChhhHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHH
Q 001481 379 AAFPESYIDSDSRFIEKVTFKANMERR-LGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDIL 457 (1071)
Q Consensus 379 ~~~~~al~~~~p~~~~~w~~~a~le~~-~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~g~~e~Ar~i~ 457 (1071)
.+|.+|.++. .....+++..|-+|.- .++.+.|.++|+-+++. +++.+.+...|..++. ..|+-..||.+|
T Consensus 387 ~iF~kaR~~~-r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkk------f~d~p~yv~~YldfL~-~lNdd~N~R~LF 458 (656)
T KOG1914|consen 387 KIFKKAREDK-RTRHHVFVAAALMEYYCSKDKETAFRIFELGLKK------FGDSPEYVLKYLDFLS-HLNDDNNARALF 458 (656)
T ss_pred HHHHHHhhcc-CCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHh------cCCChHHHHHHHHHHH-HhCcchhHHHHH
Confidence 9999998532 2234667766666554 58999999999999998 8889999999999998 999999999999
Q ss_pred HHHHhh--CCC-hHHHHHHHHHHHHHcCCCCchhhHHHH
Q 001481 458 IDGIKH--VPN-CKLLLEELIKFTMVHGGRSHISIVDAV 493 (1071)
Q Consensus 458 e~al~~--~P~-~~~lw~~~~~~e~~~g~~~~a~~~r~l 493 (1071)
++++.. .++ +..+|..++++|.+.||.+.+..+.+-
T Consensus 459 Er~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR 497 (656)
T KOG1914|consen 459 ERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKR 497 (656)
T ss_pred HHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 999998 443 678999999999999999887533333
No 20
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.88 E-value=1.8e-19 Score=222.71 Aligned_cols=335 Identities=10% Similarity=-0.001 Sum_probs=268.6
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCC
Q 001481 43 LLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFE 122 (1071)
Q Consensus 43 li~~~~~~~~~~~~~a~~vyeraL~~~P~s~~lW~~~a~~e~~~~~~e~A~~lferAL~~~P~s~~lW~~y~~~~~~~~~ 122 (1071)
.+..+... |+..+|..+++..+...|.....+..++......|++++|+..|++++...|.+.+.|...+..+... +
T Consensus 48 ~~~~~~~~--g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~-g 124 (656)
T PRK15174 48 FAIACLRK--DETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKS-K 124 (656)
T ss_pred HHHHHHhc--CCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc-C
Confidence 33334444 89999999999999999999999999999998999999999999999999999999999999998888 9
Q ss_pred ChhHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhccCCccHHHHHHHHHHHHHhHHHhhhhhch
Q 001481 123 DPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAGAWKEELECESD 202 (1071)
Q Consensus 123 ~~e~ar~l~erAL~~~~~~~~s~~lW~~yi~fe~~~~~~~~a~~iy~ral~~p~~~l~~~~~~~~~~~~~~~e~l~~~~~ 202 (1071)
++++|...|++|+...|. ....|...+......++.+.+..+|++++......... +.....
T Consensus 125 ~~~~Ai~~l~~Al~l~P~---~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a-~~~~~~-------------- 186 (656)
T PRK15174 125 QYATVADLAEQAWLAFSG---NSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDM-IATCLS-------------- 186 (656)
T ss_pred CHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHH-HHHHHH--------------
Confidence 999999999999998765 45788888888888999999999998886532222111 100000
Q ss_pred hhHHHHHHHhhcCCccCCcccchhhHHHhhhcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCCC
Q 001481 203 SAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVK 282 (1071)
Q Consensus 203 ~~~~~~~~~~~~~~l~~~~~~~e~~~~i~~~~d~~~~~~~a~~l~~~~~~~~~~y~~a~~~~~~~~~fE~ai~~~~~~~~ 282 (1071)
.+ ..+.+.+|.. .+...+.. .
T Consensus 187 --------l~----------------------------------------~~g~~~eA~~------~~~~~l~~-----~ 207 (656)
T PRK15174 187 --------FL----------------------------------------NKSRLPEDHD------LARALLPF-----F 207 (656)
T ss_pred --------HH----------------------------------------HcCCHHHHHH------HHHHHHhc-----C
Confidence 00 0001122222 22222221 0
Q ss_pred CCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCHHH----HHHHHHHHHHHhhccch
Q 001481 283 PLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREI----ASYALDRATQIFLKRLP 358 (1071)
Q Consensus 283 ~~~p~~~~~W~~y~~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~----A~~il~rAl~~~~~~~p 358 (1071)
+ +.....+...+..+...|++++|+..|++++...|.+..+|+.++..+...|++++ |+..|++|+.+ .|.++
T Consensus 208 ~--~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l-~P~~~ 284 (656)
T PRK15174 208 A--LERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF-NSDNV 284 (656)
T ss_pred C--CcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh-CCCCH
Confidence 0 11223334456667788999999999999999999999999999999999999875 89999999987 77788
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHH
Q 001481 359 VIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQ 438 (1071)
Q Consensus 359 ~i~~~~a~~e~~~g~~~~A~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~ 438 (1071)
.++..++.++...|++++|+..|++++ .+.|++..++..++.++...|++++|+..|++++.. .|....++..
T Consensus 285 ~a~~~lg~~l~~~g~~~eA~~~l~~al-~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~------~P~~~~~~~~ 357 (656)
T PRK15174 285 RIVTLYADALIRTGQNEKAIPLLQQSL-ATHPDLPYVRAMYARALRQVGQYTAASDEFVQLARE------KGVTSKWNRY 357 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CccchHHHHH
Confidence 899999999999999999999999999 778999999999999999999999999999999988 6777777777
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHhhCCChH
Q 001481 439 FSRLTYTTTGSADNARDILIDGIKHVPNCK 468 (1071)
Q Consensus 439 ~A~~~~~~~g~~e~Ar~i~e~al~~~P~~~ 468 (1071)
.|.++. ..|++++|+++|+++++..|++.
T Consensus 358 ~a~al~-~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 358 AAAALL-QAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHHH-HCCCHHHHHHHHHHHHHhChhhc
Confidence 788877 89999999999999999999864
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.88 E-value=4.9e-19 Score=223.19 Aligned_cols=401 Identities=11% Similarity=0.031 Sum_probs=268.9
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcC
Q 001481 25 GLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSAT 104 (1071)
Q Consensus 25 ~le~al~~nP~d~~~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P~s~~lW~~~a~~e~~~~~~e~A~~lferAL~~~P 104 (1071)
.+++++..+|.+...|..++..+... +++++|..+|+++++..|.+..+|..++......+++++|+.+++++++..|
T Consensus 37 ~~~~~~~~~~~~a~~~~~lA~~~~~~--g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P 114 (765)
T PRK10049 37 VYNRYRVHMQLPARGYAAVAVAYRNL--KQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAP 114 (765)
T ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 45555555666666677777666666 6777777777777777777777777777777777777777777777777777
Q ss_pred CCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhccCCccHHHHHH
Q 001481 105 YSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYD 184 (1071)
Q Consensus 105 ~s~~lW~~y~~~~~~~~~~~e~ar~l~erAL~~~~~~~~s~~lW~~yi~fe~~~~~~~~a~~iy~ral~~p~~~l~~~~~ 184 (1071)
.+.. |..++..+... +++++|..+|+++++..|. ...+|..++......+..+.+...+++++..|...
T Consensus 115 ~~~~-~~~la~~l~~~-g~~~~Al~~l~~al~~~P~---~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~------ 183 (765)
T PRK10049 115 DKAN-LLALAYVYKRA-GRHWDELRAMTQALPRAPQ---TQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEK------ 183 (765)
T ss_pred CCHH-HHHHHHHHHHC-CCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHH------
Confidence 7777 76666666655 6777777777777766554 34556666666555566666666666655543200
Q ss_pred HHHHHHHhHHHhhhhhchhhHHHHHHHhhcCCccCCcccchhhHHHhhhcCcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001481 185 SFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLD 264 (1071)
Q Consensus 185 ~~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~i~~~~d~~~~~~~a~~l~~~~~~~~~~y~~a~~~~ 264 (1071)
..+.... . ...+ ..... .... ....|..+ .
T Consensus 184 ---~~l~~~~---~------~~~~-r~~~~----~~~~------------------------------~~~r~~~a---d 213 (765)
T PRK10049 184 ---RDLEADA---A------AELV-RLSFM----PTRS------------------------------EKERYAIA---D 213 (765)
T ss_pred ---HHHHHHH---H------HHHH-Hhhcc----cccC------------------------------hhHHHHHH---H
Confidence 0000000 0 0000 00000 0000 00001000 1
Q ss_pred HHHHHHHHHhcccCcCCCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHhhcCC---CCCHHHHHHHHHHHHhhCCHHH
Q 001481 265 EKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPC---ADYPEFWMRYVDFMESKGGREI 341 (1071)
Q Consensus 265 ~~~~~fE~ai~~~~~~~~~~~p~~~~~W~~y~~~~~~~g~~~~a~~~yerAL~~~---p~~~~lW~~ya~~l~~~g~~e~ 341 (1071)
+++..|+..++. +.......+.....+...+..+...|++++|+..|++++... |.+..+|+ +.++...|++++
T Consensus 214 ~Al~~~~~ll~~-~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~l--a~~yl~~g~~e~ 290 (765)
T PRK10049 214 RALAQYDALEAL-WHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWV--ASAYLKLHQPEK 290 (765)
T ss_pred HHHHHHHHHHhh-cccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHH--HHHHHhcCCcHH
Confidence 223334444421 000011122233344443344456789999999999999874 55666774 778889999999
Q ss_pred HHHHHHHHHHHhhccc----hHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCh---------------hhHHHHHHHHHH
Q 001481 342 ASYALDRATQIFLKRL----PVIHLFNARYKEQIGDTSAARAAFPESYIDSDS---------------RFIEKVTFKANM 402 (1071)
Q Consensus 342 A~~il~rAl~~~~~~~----p~i~~~~a~~e~~~g~~~~A~~~~~~al~~~~p---------------~~~~~w~~~a~l 402 (1071)
|+.+|++++.. .+.. ...+..++..+...|++++|+.++++++ ...| ....++..++.+
T Consensus 291 A~~~l~~~l~~-~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~-~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~ 368 (765)
T PRK10049 291 AQSILTELFYH-PETIADLSDEELADLFYSLLESENYPGALTVTAHTI-NNSPPFLRLYGSPTSIPNDDWLQGQSLLSQV 368 (765)
T ss_pred HHHHHHHHhhc-CCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHh-hcCCceEeecCCCCCCCCchHHHHHHHHHHH
Confidence 99999998875 3332 1234444555678999999999999988 4333 234567888899
Q ss_pred HHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcC
Q 001481 403 ERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLLLEELIKFTMVHG 482 (1071)
Q Consensus 403 e~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~~~P~~~~lw~~~~~~e~~~g 482 (1071)
+...|++++|+++|++++.. .|.+..+++.+|.++. ..|++++|.++|+++++.+|++..++...+......|
T Consensus 369 l~~~g~~~eA~~~l~~al~~------~P~n~~l~~~lA~l~~-~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~ 441 (765)
T PRK10049 369 AKYSNDLPQAEMRARELAYN------APGNQGLRIDYASVLQ-ARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQ 441 (765)
T ss_pred HHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhC
Confidence 99999999999999999998 7899999999999998 9999999999999999999999999999999999999
Q ss_pred CCCchhhHHHHHHHhhccCCc
Q 001481 483 GRSHISIVDAVISNALYSRPD 503 (1071)
Q Consensus 483 ~~~~a~~~r~l~e~Al~~~~d 503 (1071)
+++.++ .++++++...|+
T Consensus 442 ~~~~A~---~~~~~ll~~~Pd 459 (765)
T PRK10049 442 EWRQMD---VLTDDVVAREPQ 459 (765)
T ss_pred CHHHHH---HHHHHHHHhCCC
Confidence 888775 999999987774
No 22
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.88 E-value=5.5e-19 Score=218.33 Aligned_cols=348 Identities=13% Similarity=-0.007 Sum_probs=280.8
Q ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 001481 23 KQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQS 102 (1071)
Q Consensus 23 ~~~le~al~~nP~d~~~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P~s~~lW~~~a~~e~~~~~~e~A~~lferAL~~ 102 (1071)
...++..+..+|.+.+++..++...... ++++.|...|++++..+|.+...|..++......|++++|+..|++++..
T Consensus 62 ~~l~~~~l~~~p~~~~~l~~l~~~~l~~--g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l 139 (656)
T PRK15174 62 LTLLSDRVLTAKNGRDLLRRWVISPLAS--SQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLA 139 (656)
T ss_pred HHHhHHHHHhCCCchhHHHHHhhhHhhc--CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3478999999999999999999877766 99999999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhcc-CCccHHH
Q 001481 103 ATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRF-PSKKLHH 181 (1071)
Q Consensus 103 ~P~s~~lW~~y~~~~~~~~~~~e~ar~l~erAL~~~~~~~~s~~lW~~yi~fe~~~~~~~~a~~iy~ral~~-p~~~l~~ 181 (1071)
.|.+..+|...+..+... +++++|...|++++...|.. ...|...+. ....++++++..+|++++.. |.....
T Consensus 140 ~P~~~~a~~~la~~l~~~-g~~~eA~~~~~~~~~~~P~~---~~a~~~~~~-l~~~g~~~eA~~~~~~~l~~~~~~~~~- 213 (656)
T PRK15174 140 FSGNSQIFALHLRTLVLM-DKELQAISLARTQAQEVPPR---GDMIATCLS-FLNKSRLPEDHDLARALLPFFALERQE- 213 (656)
T ss_pred CCCcHHHHHHHHHHHHHC-CChHHHHHHHHHHHHhCCCC---HHHHHHHHH-HHHcCCHHHHHHHHHHHHhcCCCcchh-
Confidence 999999999999998888 99999999999988877653 345544333 45578899999999988764 222110
Q ss_pred HHHHHHHHHHhHHHhhhhhchhhHHHHHHHhhcCCccCCcccchhhHHHhhhcCcchhHHHHHHHHHHHHHHHHHHHHHH
Q 001481 182 YYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEAS 261 (1071)
Q Consensus 182 ~~~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~i~~~~d~~~~~~~a~~l~~~~~~~~~~y~~a~ 261 (1071)
.+. .... . +....
T Consensus 214 ~~~----~l~~------------------~---------------------------------------------l~~~g 226 (656)
T PRK15174 214 SAG----LAVD------------------T---------------------------------------------LCAVG 226 (656)
T ss_pred HHH----HHHH------------------H---------------------------------------------HHHCC
Confidence 000 0000 0 00000
Q ss_pred HHHHHHHHHHHHhcccCcCCCCCChhHHHHHHHHHHHHHHhCCHHH----HHHHHHHhhcCCCCCHHHHHHHHHHHHhhC
Q 001481 262 QLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDW----VVKLYERCLIPCADYPEFWMRYVDFMESKG 337 (1071)
Q Consensus 262 ~~~~~~~~fE~ai~~~~~~~~~~~p~~~~~W~~y~~~~~~~g~~~~----a~~~yerAL~~~p~~~~lW~~ya~~l~~~g 337 (1071)
...+....|++++. ..|+...+|..++..+...|++++ |+..|++++...|++..+|..++..+...|
T Consensus 227 ~~~eA~~~~~~al~--------~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g 298 (656)
T PRK15174 227 KYQEAIQTGESALA--------RGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTG 298 (656)
T ss_pred CHHHHHHHHHHHHh--------cCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCC
Confidence 11122233444443 357778999999999999999885 899999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHH
Q 001481 338 GREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYK 417 (1071)
Q Consensus 338 ~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~~A~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~~y~ 417 (1071)
++++|+..|++++.+ .|..+.++..++.++...|++++|+..|.+++ ...|+....++..+.++...|++++|+..|+
T Consensus 299 ~~~eA~~~l~~al~l-~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al-~~~P~~~~~~~~~a~al~~~G~~deA~~~l~ 376 (656)
T PRK15174 299 QNEKAIPLLQQSLAT-HPDLPYVRAMYARALRQVGQYTAASDEFVQLA-REKGVTSKWNRYAAAALLQAGKTSEAESVFE 376 (656)
T ss_pred CHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCccchHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999999987 78888899999999999999999999999998 6678877667777888899999999999999
Q ss_pred HHHHHHhhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCChHH--HHHHH
Q 001481 418 EALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKL--LLEEL 474 (1071)
Q Consensus 418 ~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~~~P~~~~--lw~~~ 474 (1071)
++++. .|... ..++++|+..|.+++...+.... -|..=
T Consensus 377 ~al~~------~P~~~-------------~~~~~ea~~~~~~~~~~~~~~~~~~~W~~~ 416 (656)
T PRK15174 377 HYIQA------RASHL-------------PQSFEEGLLALDGQISAVNLPPERLDWAWE 416 (656)
T ss_pred HHHHh------Chhhc-------------hhhHHHHHHHHHHHHHhcCCccchhhHHHH
Confidence 99998 44432 34456899999999998765432 46543
No 23
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.87 E-value=9.7e-18 Score=211.70 Aligned_cols=494 Identities=11% Similarity=-0.005 Sum_probs=323.9
Q ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 001481 23 KQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQS 102 (1071)
Q Consensus 23 ~~~le~al~~nP~d~~~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P~s~~lW~~~a~~e~~~~~~e~A~~lferAL~~ 102 (1071)
.+.|+++|+.+|++..+++.+++++... ++.++|+..++++++.+|.+..++..++.+ +++++|..+|++.++.
T Consensus 64 ~~~l~~Al~~dP~n~~~~~~LA~~yl~~--g~~~~A~~~~~kAv~ldP~n~~~~~~La~i----~~~~kA~~~ye~l~~~ 137 (987)
T PRK09782 64 IREFEYIHQQVPDNIPLTLYLAEAYRHF--GHDDRARLLLEDQLKRHPGDARLERSLAAI----PVEVKSVTTVEELLAQ 137 (987)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHhcCcccHHHHHHHHHh----ccChhHHHHHHHHHHh
Confidence 5589999999999999999999999888 999999999999999999999888887665 7888999999999999
Q ss_pred cCCCHHHHHHHHHHH-----HhhCCChhHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhccCCc
Q 001481 103 ATYSVDVWFHYCSLS-----MSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSK 177 (1071)
Q Consensus 103 ~P~s~~lW~~y~~~~-----~~~~~~~e~ar~l~erAL~~~~~~~~s~~lW~~yi~fe~~~~~~~~a~~iy~ral~~p~~ 177 (1071)
.|.+.++....+..+ +.. ...+.+.++++ ++.+..+.+...+.....++....++++.+.++|.++++....
T Consensus 138 ~P~n~~~~~~la~~~~~~~~l~y-~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl 214 (987)
T PRK09782 138 QKACDAVPTLRCRSEVGQNALRL-AQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTL 214 (987)
T ss_pred CCCChhHHHHHHHHhhccchhhh-hhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCC
Confidence 999988776666651 111 33466666666 4444433333334444467777777888888888888764222
Q ss_pred cHHH---HHHHHHHHHHh------HHHhhh-------h--------hc-hhhHHHH-----------------HHHhhcC
Q 001481 178 KLHH---YYDSFKKLAGA------WKEELE-------C--------ES-DSAMEFQ-----------------SELVLEG 215 (1071)
Q Consensus 178 ~l~~---~~~~~~~~~~~------~~e~l~-------~--------~~-~~~~~~~-----------------~~~~~~~ 215 (1071)
.... +-..|....+. +.+.+. + .. +.+...+ +.+...+
T Consensus 215 ~~~~~~~L~~ay~q~l~~~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~ 294 (987)
T PRK09782 215 SAAERRQWFDVLLAGQLDDRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYS 294 (987)
T ss_pred CHHHHHHHHHHHHHhhCHHHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhcc
Confidence 1110 10111110000 000000 0 00 0000000 0000000
Q ss_pred Ccc----CCcc-------------------cchhhHHHhhhcC--cchh--------------HHHHHHH----------
Q 001481 216 EVP----AYYK-------------------DDETSSVIKDLLD--PSVD--------------LVRSKAI---------- 246 (1071)
Q Consensus 216 ~l~----~~~~-------------------~~e~~~~i~~~~d--~~~~--------------~~~a~~l---------- 246 (1071)
... ..+. ..+.+.....+.+ .... ..++...
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~ 374 (987)
T PRK09782 295 ANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPA 374 (987)
T ss_pred CchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCC
Confidence 000 0000 0000000000000 0000 0000000
Q ss_pred -------HHHHHHHHHHHHHHHHHHHHH------------------HHHHHHhc--------------------------
Q 001481 247 -------QKYRFIGEQIYKEASQLDEKI------------------NCFENLIR-------------------------- 275 (1071)
Q Consensus 247 -------~~~~~~~~~~y~~a~~~~~~~------------------~~fE~ai~-------------------------- 275 (1071)
..+..+..+.+.+|...++.. ..|.+...
T Consensus 375 ~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 454 (987)
T PRK09782 375 NLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQL 454 (987)
T ss_pred CHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhh
Confidence 001111111122222211110 01111000
Q ss_pred -------ccCcCCCCCChh--HHHHHHHHHHHHHHhCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCHHHHHHHH
Q 001481 276 -------RPYFHVKPLDDI--QLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYAL 346 (1071)
Q Consensus 276 -------~~~~~~~~~~p~--~~~~W~~y~~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il 346 (1071)
..+....+..|. ...+|..++.++.. +++.+|+.+|.+++...|... ..+.++..+...|++++|+..|
T Consensus 455 ~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~ 532 (987)
T PRK09782 455 PGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAW 532 (987)
T ss_pred hhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHH
Confidence 000011123355 77888999888876 788889999999999888754 3666677778899999999999
Q ss_pred HHHHHHhhccchHHHHHHHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhh
Q 001481 347 DRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQ 426 (1071)
Q Consensus 347 ~rAl~~~~~~~p~i~~~~a~~e~~~g~~~~A~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~ 426 (1071)
++++.. +..+..++..+.++...|++++|..+|.+++ ...|....++..++....+.|++++|+..|++|++.
T Consensus 533 rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL-~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l---- 605 (987)
T PRK09782 533 QKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAE-QRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI---- 605 (987)
T ss_pred HHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHH-hcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh----
Confidence 998764 2234467788888889999999999999999 567777666666555555679999999999999998
Q ss_pred ccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCCCchhhHHHHHHHhhccCCcccc
Q 001481 427 RKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLLLEELIKFTMVHGGRSHISIVDAVISNALYSRPDVLK 506 (1071)
Q Consensus 427 ~~~p~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~~~P~~~~lw~~~~~~e~~~g~~~~a~~~r~l~e~Al~~~~d~~~ 506 (1071)
.|. +.+|..+|.++. ..|++++|..+|+++++..|++..++..++.++...|+.+.+. .+|++|+...|+
T Consensus 606 --~P~-~~a~~~LA~~l~-~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi---~~l~~AL~l~P~--- 675 (987)
T PRK09782 606 --APS-ANAYVARATIYR-QRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSR---EMLERAHKGLPD--- 675 (987)
T ss_pred --CCC-HHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH---HHHHHHHHhCCC---
Confidence 675 899999999998 9999999999999999999999999999999999999988774 899999977662
Q ss_pred cCChhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCccc
Q 001481 507 VFSLEDVEDISSLYLQQFLDLCGTIHDIRNAWNQHIKLFPHTVRT 551 (1071)
Q Consensus 507 ~l~~~~~~~lw~~~l~~~e~~~G~~e~a~~~~~ra~~~~p~~~~~ 551 (1071)
+ ..+|.... ......|+++.|..++++++++.|+.+..
T Consensus 676 -----~-~~a~~nLA-~al~~lGd~~eA~~~l~~Al~l~P~~a~i 713 (987)
T PRK09782 676 -----D-PALIRQLA-YVNQRLDDMAATQHYARLVIDDIDNQALI 713 (987)
T ss_pred -----C-HHHHHHHH-HHHHHCCCHHHHHHHHHHHHhcCCCCchh
Confidence 3 35666666 78889999999999999999999998763
No 24
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=99.86 E-value=1.1e-17 Score=184.91 Aligned_cols=446 Identities=13% Similarity=0.136 Sum_probs=259.0
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHhc
Q 001481 25 GLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCS-IDKVVEVFERAVQSA 103 (1071)
Q Consensus 25 ~le~al~~nP~d~~~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P~s~~lW~~~a~~e~~~~~-~e~A~~lferAL~~~ 103 (1071)
.|+.++.+++.|+.+|..++.++++. +.+.+...||..+|..+|+++++|+..+.|+.+-+. ++.|+.+|.|+|+.+
T Consensus 93 lyr~at~rf~~D~~lW~~yi~f~kk~--~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~n 170 (568)
T KOG2396|consen 93 LYRRATNRFNGDVKLWLSYIAFCKKK--KTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFN 170 (568)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHh--cchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcC
Confidence 78999999999999999999999988 778899999999999999999999999999987654 999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHccCHHHHHHHHHHHh---ccCCccH-
Q 001481 104 TYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTL---RFPSKKL- 179 (1071)
Q Consensus 104 P~s~~lW~~y~~~~~~~~~~~e~ar~l~erAL~~~~~~~~s~~lW~~yi~fe~~~~~~~~a~~iy~ral---~~p~~~l- 179 (1071)
|.+++||.+|+++++.. +.++..+-.. +|.+..+.. .+++. .+.+..++.-.+ +.+....
T Consensus 171 pdsp~Lw~eyfrmEL~~------~~Kl~~rr~~-~g~~~~~~~-----~eie~----ge~~~~~~~~s~~~~~~~~k~~e 234 (568)
T KOG2396|consen 171 PDSPKLWKEYFRMELMY------AEKLRNRREE-LGLDSSDKD-----EEIER----GELAWINYANSVDIIKGAVKSVE 234 (568)
T ss_pred CCChHHHHHHHHHHHHH------HHHHHHHHHH-hccccchhH-----HHHHH----HHHHHHhhccchhhhhcchhhcc
Confidence 99999999999998876 4444443322 233221110 11111 112222221111 1111100
Q ss_pred ---HHHHHHHHHHHHhHHHhhhhhchhhHHHHHHHhhcCCccCCcccchhhHH-Hh--hhcCcchhHHHHHHHHHHHHHH
Q 001481 180 ---HHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSV-IK--DLLDPSVDLVRSKAIQKYRFIG 253 (1071)
Q Consensus 180 ---~~~~~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~-i~--~~~d~~~~~~~a~~l~~~~~~~ 253 (1071)
...++...+.-..+...+. ...++.. ..+ +++..- ++ .-.+.......++
T Consensus 235 ~~~~~~~d~~kel~k~i~d~~~-----------~~~~~np--~~~--~~laqr~l~i~~~tdl~~~~~~~~--------- 290 (568)
T KOG2396|consen 235 LSVAEKFDFLKELQKNIIDDLQ-----------SKAPDNP--LLW--DDLAQRELEILSQTDLQHTDNQAK--------- 290 (568)
T ss_pred hHHHHHHHHHHHHHHHHHHHHh-----------ccCCCCC--ccH--HHHHHHHHHHHHHhhccchhhhhh---------
Confidence 1111111111111100000 0000000 000 000000 00 0000000000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccCcCCCCCChhHHHHHHHHHHHHHHh-----C-CHHHHHHHHHHhhcCCCCCHHHHH
Q 001481 254 EQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQ-----G-DFDWVVKLYERCLIPCADYPEFWM 327 (1071)
Q Consensus 254 ~~~y~~a~~~~~~~~~fE~ai~~~~~~~~~~~p~~~~~W~~y~~~~~~~-----g-~~~~a~~~yerAL~~~p~~~~lW~ 327 (1071)
-+..+.+.......||+++.. -.....|..||.++... | .+.....+|+.+...........-
T Consensus 291 --~~~~~~k~s~~~~v~ee~v~~---------l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~ 359 (568)
T KOG2396|consen 291 --AVEVGSKESRCCAVYEEAVKT---------LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYK 359 (568)
T ss_pred --chhcchhHHHHHHHHHHHHHH---------hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHH
Confidence 011112223344677777752 12346899999987653 2 456678889988876655555555
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHH-hCCHH----HHHHHHHHHhhccChhhHHHHHHHHHH
Q 001481 328 RYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQ-IGDTS----AARAAFPESYIDSDSRFIEKVTFKANM 402 (1071)
Q Consensus 328 ~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~-~g~~~----~A~~~~~~al~~~~p~~~~~w~~~a~l 402 (1071)
.|+..+.-.....+++.+-.+.+.-...+...+|+.....+.+ ..++. ++...|.+.+ .......|...+
T Consensus 360 ~ys~~~l~~~t~~~~r~~a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~---~s~~~~~w~s~~-- 434 (568)
T KOG2396|consen 360 QYSVLLLCLNTLNEAREVAVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQV---CSELLISWASAS-- 434 (568)
T ss_pred HHHHHHHHHhccchHhHHHHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHh---cchhHHHHHHHh--
Confidence 5555444444444555555444422223455677776555542 22222 2222222222 223344454444
Q ss_pred HHHcCC-H-HHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHH
Q 001481 403 ERRLGN-F-VAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLLLEELIKFTMV 480 (1071)
Q Consensus 403 e~~~g~-~-~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~~~P~~~~lw~~~~~~e~~ 480 (1071)
.|+ + .....++-.|+..+. ..+..+...-|+.| ++ +.|.+.+||++|.+....-|.+.+++...+.||..
T Consensus 435 ---~~dsl~~~~~~~Ii~a~~s~~-~~~~~tl~s~~l~~---~~-e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~ 506 (568)
T KOG2396|consen 435 ---EGDSLQEDTLDLIISALLSVI-GADSVTLKSKYLDW---AY-ESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKE 506 (568)
T ss_pred ---hccchhHHHHHHHHHHHHHhc-CCceeehhHHHHHH---HH-HhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhh
Confidence 122 2 222333333333321 11122333344444 55 89999999999999999999999999999999987
Q ss_pred cCCCCchhhHHHHHHHhhccCCcccccCChhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 001481 481 HGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQQFLDLCGTIHDIRNAWNQHIKLFPH 547 (1071)
Q Consensus 481 ~g~~~~a~~~r~l~e~Al~~~~d~~~~l~~~~~~~lw~~~l~~~e~~~G~~e~a~~~~~ra~~~~p~ 547 (1071)
.-.-. ...+|.+|++|+.... ...++|..|+ .+|..+|..+++-.+|.||++.+-.
T Consensus 507 ~~sc~-l~~~r~~yd~a~~~fg---------~d~~lw~~y~-~~e~~~g~~en~~~~~~ra~ktl~~ 562 (568)
T KOG2396|consen 507 QESCN-LANIREYYDRALREFG---------ADSDLWMDYM-KEELPLGRPENCGQIYWRAMKTLQG 562 (568)
T ss_pred HhhcC-chHHHHHHHHHHHHhC---------CChHHHHHHH-HhhccCCCcccccHHHHHHHHhhCh
Confidence 64333 3456799999996432 3358999999 9999999999999999999998754
No 25
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.85 E-value=6.4e-18 Score=213.14 Aligned_cols=423 Identities=9% Similarity=-0.015 Sum_probs=302.2
Q ss_pred hCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcCCCHHHHH
Q 001481 32 EGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWF 111 (1071)
Q Consensus 32 ~nP~d~~~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P~s~~lW~~~a~~e~~~~~~e~A~~lferAL~~~P~s~~lW~ 111 (1071)
.+|.-+.-|+.++... |+.++|..+|++++...|.....|..++......+++++|..+|+++|...|.+.++|.
T Consensus 13 ~~~~~~~d~~~ia~~~-----g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~ 87 (765)
T PRK10049 13 LSNNQIADWLQIALWA-----GQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQR 87 (765)
T ss_pred CCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 3555566777776632 78999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCChhHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhccCCccHHHHHHHHHHHHH
Q 001481 112 HYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAG 191 (1071)
Q Consensus 112 ~y~~~~~~~~~~~e~ar~l~erAL~~~~~~~~s~~lW~~yi~fe~~~~~~~~a~~iy~ral~~p~~~l~~~~~~~~~~~~ 191 (1071)
.++..+... +++++|...++++++..|.+ .. |..++......++.+.+...|++++.....+....+ .+.....
T Consensus 88 ~la~~l~~~-g~~~eA~~~l~~~l~~~P~~---~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~-~la~~l~ 161 (765)
T PRK10049 88 GLILTLADA-GQYDEALVKAKQLVSGAPDK---AN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPT-EYVQALR 161 (765)
T ss_pred HHHHHHHHC-CCHHHHHHHHHHHHHhCCCC---HH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH-HHHHHHH
Confidence 999988888 99999999999999987763 45 888888888899999999999999985444322221 1111111
Q ss_pred h---HHHhhhhhchhhHHHHHHHhhcCCccCCcccchhhHHHhhhcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001481 192 A---WKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKIN 268 (1071)
Q Consensus 192 ~---~~e~l~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~i~~~~d~~~~~~~a~~l~~~~~~~~~~y~~a~~~~~~~~ 268 (1071)
. .++++. .++.... .+.. .......
T Consensus 162 ~~~~~e~Al~------------------------------~l~~~~~-~p~~-----------------~~~l~~~---- 189 (765)
T PRK10049 162 NNRLSAPALG------------------------------AIDDANL-TPAE-----------------KRDLEAD---- 189 (765)
T ss_pred HCCChHHHHH------------------------------HHHhCCC-CHHH-----------------HHHHHHH----
Confidence 0 000000 0000000 0000 0000000
Q ss_pred HHHHHhcccCcCCCCCChhHHHHHHHHHHHHHHhCCH---HHHHHHHHHhhcCCCCCH-------HHHHHHHHHHHhhCC
Q 001481 269 CFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDF---DWVVKLYERCLIPCADYP-------EFWMRYVDFMESKGG 338 (1071)
Q Consensus 269 ~fE~ai~~~~~~~~~~~p~~~~~W~~y~~~~~~~g~~---~~a~~~yerAL~~~p~~~-------~lW~~ya~~l~~~g~ 338 (1071)
+....+...+.......+++ ++|+..|++++...+.++ .+++..+..+...|+
T Consensus 190 -----------------~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~ 252 (765)
T PRK10049 190 -----------------AAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDR 252 (765)
T ss_pred -----------------HHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhh
Confidence 00000000010000112223 678889999886533332 233332333456789
Q ss_pred HHHHHHHHHHHHHHhhccchH-HHHHHHHHHHHhCCHHHHHHHHHHHhhccChhh----HHHHHHHHHHHHHcCCHHHHH
Q 001481 339 REIASYALDRATQIFLKRLPV-IHLFNARYKEQIGDTSAARAAFPESYIDSDSRF----IEKVTFKANMERRLGNFVAAC 413 (1071)
Q Consensus 339 ~e~A~~il~rAl~~~~~~~p~-i~~~~a~~e~~~g~~~~A~~~~~~al~~~~p~~----~~~w~~~a~le~~~g~~~~A~ 413 (1071)
+++|+..|++++.. .+..|. .....+.++...|++++|+.+|++++ ...|.. ...+..++..+.+.|++++|+
T Consensus 253 ~~eA~~~~~~ll~~-~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l-~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~ 330 (765)
T PRK10049 253 YKDVISEYQRLKAE-GQIIPPWAQRWVASAYLKLHQPEKAQSILTELF-YHPETIADLSDEELADLFYSLLESENYPGAL 330 (765)
T ss_pred HHHHHHHHHHhhcc-CCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHh-hcCCCCCCCChHHHHHHHHHHHhcccHHHHH
Confidence 99999999998875 222342 33335778889999999999999998 445543 345666666678889999999
Q ss_pred HHHHHHHHHHhhh-------ccCCC--cHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCC
Q 001481 414 DTYKEALETAAEQ-------RKFHT--LPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLLLEELIKFTMVHGGR 484 (1071)
Q Consensus 414 ~~y~~Al~~~~~~-------~~~p~--~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~~~P~~~~lw~~~~~~e~~~g~~ 484 (1071)
.+|++++...++. ...|. ...++..+|.++. ..|++++|+++|++++...|++..+|..++.++...|+.
T Consensus 331 ~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~-~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~ 409 (765)
T PRK10049 331 TVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAK-YSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWP 409 (765)
T ss_pred HHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Confidence 9999998873211 01112 2356778888887 899999999999999999999999999999999999998
Q ss_pred CchhhHHHHHHHhhccCCcccccCChhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcc
Q 001481 485 SHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQQFLDLCGTIHDIRNAWNQHIKLFPHTVR 550 (1071)
Q Consensus 485 ~~a~~~r~l~e~Al~~~~d~~~~l~~~~~~~lw~~~l~~~e~~~G~~e~a~~~~~ra~~~~p~~~~ 550 (1071)
+.+. .++++|+...|+ + ..++...+ ......|+++.|..+++++++..|+++.
T Consensus 410 ~~A~---~~l~~al~l~Pd--------~-~~l~~~~a-~~al~~~~~~~A~~~~~~ll~~~Pd~~~ 462 (765)
T PRK10049 410 RAAE---NELKKAEVLEPR--------N-INLEVEQA-WTALDLQEWRQMDVLTDDVVAREPQDPG 462 (765)
T ss_pred HHHH---HHHHHHHhhCCC--------C-hHHHHHHH-HHHHHhCCHHHHHHHHHHHHHhCCCCHH
Confidence 7775 999999987663 2 34676777 7778899999999999999999999765
No 26
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.83 E-value=8.6e-17 Score=203.17 Aligned_cols=234 Identities=12% Similarity=0.043 Sum_probs=199.8
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHh
Q 001481 292 WHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQI 371 (1071)
Q Consensus 292 W~~y~~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~ 371 (1071)
...++..+...|++++|+..|++++...+. ...|+.++..+...|++++|...|++++.. .|....++...+......
T Consensus 512 ~L~lA~al~~~Gr~eeAi~~~rka~~~~p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l-~P~~~~l~~~La~~l~~~ 589 (987)
T PRK09782 512 HRAVAYQAYQVEDYATALAAWQKISLHDMS-NEDLLAAANTAQAAGNGAARDRWLQQAEQR-GLGDNALYWWLHAQRYIP 589 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhccCCC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCccHHHHHHHHHHHHhC
Confidence 334455556889999999999998876555 466899999999999999999999999986 333333433333334455
Q ss_pred CCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhhcCCHH
Q 001481 372 GDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSAD 451 (1071)
Q Consensus 372 g~~~~A~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~g~~e 451 (1071)
|++++|+..|.+++ .+.|+ ..+|..++.++.+.|++++|+.+|++++++ .|.++.++..+|.++. ..|+++
T Consensus 590 Gr~~eAl~~~~~AL-~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l------~Pd~~~a~~nLG~aL~-~~G~~e 660 (987)
T PRK09782 590 GQPELALNDLTRSL-NIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALEL------EPNNSNYQAALGYALW-DSGDIA 660 (987)
T ss_pred CCHHHHHHHHHHHH-HhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHH-HCCCHH
Confidence 99999999999999 77886 889999999999999999999999999999 8999999999999998 999999
Q ss_pred HHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCCCchhhHHHHHHHhhccCCcccccCChhhHHHHHHHHHHHHHHhcCCH
Q 001481 452 NARDILIDGIKHVPNCKLLLEELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQQFLDLCGTI 531 (1071)
Q Consensus 452 ~Ar~i~e~al~~~P~~~~lw~~~~~~e~~~g~~~~a~~~r~l~e~Al~~~~d~~~~l~~~~~~~lw~~~l~~~e~~~G~~ 531 (1071)
+|+++|+++++..|+++.+|..++..+...|+.+.++ ..|++|+...|+ ...+-..+. .++..-+++
T Consensus 661 eAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~---~~l~~Al~l~P~---------~a~i~~~~g-~~~~~~~~~ 727 (987)
T PRK09782 661 QSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQ---HYARLVIDDIDN---------QALITPLTP-EQNQQRFNF 727 (987)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH---HHHHHHHhcCCC---------Cchhhhhhh-HHHHHHHHH
Confidence 9999999999999999999999999999999998875 999999987662 345666777 888888889
Q ss_pred HHHHHHHHHHHHhCCCCc
Q 001481 532 HDIRNAWNQHIKLFPHTV 549 (1071)
Q Consensus 532 e~a~~~~~ra~~~~p~~~ 549 (1071)
..+.+.|.|+...-|++.
T Consensus 728 ~~a~~~~~r~~~~~~~~~ 745 (987)
T PRK09782 728 RRLHEEVGRRWTFSFDSS 745 (987)
T ss_pred HHHHHHHHHHhhcCccch
Confidence 999999999999988865
No 27
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.83 E-value=8.4e-19 Score=211.34 Aligned_cols=251 Identities=17% Similarity=0.223 Sum_probs=222.4
Q ss_pred HHHHHHhcccCcCCCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHhhcC-CC----CCHHHHHHHHHHHHhhCCHHHH
Q 001481 268 NCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIP-CA----DYPEFWMRYVDFMESKGGREIA 342 (1071)
Q Consensus 268 ~~fE~ai~~~~~~~~~~~p~~~~~W~~y~~~~~~~g~~~~a~~~yerAL~~-~p----~~~~lW~~ya~~l~~~g~~e~A 342 (1071)
..|++.++ -+|+..-+|++|+.|..+.++.+.|+++.+|||.. ++ .-..+|+.|..++...|.-+..
T Consensus 1445 eDferlvr--------ssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl 1516 (1710)
T KOG1070|consen 1445 EDFERLVR--------SSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESL 1516 (1710)
T ss_pred HHHHHHHh--------cCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHH
Confidence 35665554 36888889999999999999999999999999964 22 2358999999999999988999
Q ss_pred HHHHHHHHHHhhccch-HHHHHHHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001481 343 SYALDRATQIFLKRLP-VIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALE 421 (1071)
Q Consensus 343 ~~il~rAl~~~~~~~p-~i~~~~a~~e~~~g~~~~A~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~ 421 (1071)
.++|+||+.. ++| .+|..++.++++.+.+++|.++|+..++... ....+|+.|+.++.+...-++|+.++.+|++
T Consensus 1517 ~kVFeRAcqy---cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~ 1592 (1710)
T KOG1070|consen 1517 KKVFERACQY---CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRALK 1592 (1710)
T ss_pred HHHHHHHHHh---cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 9999999987 233 5888999999999999999999999996554 6788999999999999999999999999999
Q ss_pred HHhhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCCCchhhHHHHHHHhhccC
Q 001481 422 TAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLLLEELIKFTMVHGGRSHISIVDAVISNALYSR 501 (1071)
Q Consensus 422 ~~~~~~~~p~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~~~P~~~~lw~~~~~~e~~~g~~~~a~~~r~l~e~Al~~~ 501 (1071)
.++.. ..-++.-.+|.+++ .+||.+++|.+|+-.|..+|.-.++|.-|++.++++|+.+.+ |.+|+|++..
T Consensus 1593 ~lPk~----eHv~~IskfAqLEF-k~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~v---R~lfeRvi~l- 1663 (1710)
T KOG1070|consen 1593 SLPKQ----EHVEFISKFAQLEF-KYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYV---RDLFERVIEL- 1663 (1710)
T ss_pred hcchh----hhHHHHHHHHHHHh-hcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHH---HHHHHHHHhc-
Confidence 96432 24678889999998 999999999999999999999999999999999999998876 5999999975
Q ss_pred CcccccCChhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 001481 502 PDVLKVFSLEDVEDISSLYLQQFLDLCGTIHDIRNAWNQHIKLF 545 (1071)
Q Consensus 502 ~d~~~~l~~~~~~~lw~~~l~~~e~~~G~~e~a~~~~~ra~~~~ 545 (1071)
++++.....++..|+ +||..+|+-+.+..+-.||.+.+
T Consensus 1664 -----~l~~kkmKfffKkwL-eyEk~~Gde~~vE~VKarA~EYv 1701 (1710)
T KOG1070|consen 1664 -----KLSIKKMKFFFKKWL-EYEKSHGDEKNVEYVKARAKEYV 1701 (1710)
T ss_pred -----CCChhHhHHHHHHHH-HHHHhcCchhhHHHHHHHHHHHH
Confidence 788999999999999 99999999999999988888765
No 28
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=5.6e-16 Score=170.62 Aligned_cols=430 Identities=13% Similarity=0.087 Sum_probs=288.1
Q ss_pred CcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChhHHHHHHH
Q 001481 53 DDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFK 132 (1071)
Q Consensus 53 ~~~~~a~~vyeraL~~~P~s~~lW~~~a~~e~~~~~~e~A~~lferAL~~~P~s~~lW~~y~~~~~~~~~~~e~ar~l~e 132 (1071)
+.+++|++.|..+++..|+-+-++-..+.-+...|+++++++-..+||++.|..++....-++-.... ++++++ +|+
T Consensus 129 kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~l-g~~~ea--l~D 205 (606)
T KOG0547|consen 129 KKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQL-GKFDEA--LFD 205 (606)
T ss_pred ccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhh-ccHHHH--HHh
Confidence 78999999999999999998888888888888999999999999999999998888777766665555 555543 233
Q ss_pred HHHHhcCCCCCchHHHHHHHHHHHHccCHHHHHHHHH-HH-hccCCccHHHHHHHHHHHHHhHHHhhhhhchhhHHHHHH
Q 001481 133 RALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFV-QT-LRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSE 210 (1071)
Q Consensus 133 rAL~~~~~~~~s~~lW~~yi~fe~~~~~~~~a~~iy~-ra-l~~p~~~l~~~~~~~~~~~~~~~e~l~~~~~~~~~~~~~ 210 (1071)
--+..+-.+|....+-...-+.+... ....+.+.|. +. =.+|...... . +.+.+.
T Consensus 206 ~tv~ci~~~F~n~s~~~~~eR~Lkk~-a~~ka~e~~k~nr~p~lPS~~fi~---s---yf~sF~---------------- 262 (606)
T KOG0547|consen 206 VTVLCILEGFQNASIEPMAERVLKKQ-AMKKAKEKLKENRPPVLPSATFIA---S---YFGSFH---------------- 262 (606)
T ss_pred hhHHHHhhhcccchhHHHHHHHHHHH-HHHHHHHhhcccCCCCCCcHHHHH---H---HHhhcc----------------
Confidence 22222211222222222222222211 1122333332 11 1233221111 1 111110
Q ss_pred HhhcCCccCCcccch-hhHHHhhhcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcccCcCCCCCChhH
Q 001481 211 LVLEGEVPAYYKDDE-TSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDE-KINCFENLIRRPYFHVKPLDDIQ 288 (1071)
Q Consensus 211 ~~~~~~l~~~~~~~e-~~~~i~~~~d~~~~~~~a~~l~~~~~~~~~~y~~a~~~~~-~~~~fE~ai~~~~~~~~~~~p~~ 288 (1071)
........+..+ ... .....+..+......-|.++..... ....++..+.. -.+...-...
T Consensus 263 ---~~~~~~~~~~~~ksDa------------~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~--n~~d~~le~~ 325 (606)
T KOG0547|consen 263 ---ADPKPLFDNKSDKSDA------------ALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSV--NEIDAELEYM 325 (606)
T ss_pred ---ccccccccCCCccchh------------hHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccc--cccchhHHHH
Confidence 000000000000 000 0001111111111122333333221 11222222110 0001000122
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhccchHHHHHHHHHH
Q 001481 289 LKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYK 368 (1071)
Q Consensus 289 ~~~W~~y~~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e 368 (1071)
.......+.|..-.|+...+...|+.+|..+|....+|+.++..|...++.++-...|.+|..+ .|.+|.+|+..+.+.
T Consensus 326 A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~l-dp~n~dvYyHRgQm~ 404 (606)
T KOG0547|consen 326 AEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDL-DPENPDVYYHRGQMR 404 (606)
T ss_pred HHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhc-CCCCCchhHhHHHHH
Confidence 3444455666667789999999999999999999999999999999999999999999999997 889999999999999
Q ss_pred HHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhhcC
Q 001481 369 EQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTG 448 (1071)
Q Consensus 369 ~~~g~~~~A~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~g 448 (1071)
..++++++|..-|++++ .++|.++-.++.++-++.|.+.++++...|+.+++. +|.++++|..+|.++. ..+
T Consensus 405 flL~q~e~A~aDF~Kai-~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk------FP~~~Evy~~fAeiLt-Dqq 476 (606)
T KOG0547|consen 405 FLLQQYEEAIADFQKAI-SLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK------FPNCPEVYNLFAEILT-DQQ 476 (606)
T ss_pred HHHHHHHHHHHHHHHHh-hcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CCCCchHHHHHHHHHh-hHH
Confidence 99999999999999999 899999999999999999999999999999999999 9999999999999998 999
Q ss_pred CHHHHHHHHHHHHhhCCC------hHHHHHHHHHH-HHHcCCCCchhhHHHHHHHhhccCCcccccCChhhHHHHHHHHH
Q 001481 449 SADNARDILIDGIKHVPN------CKLLLEELIKF-TMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYL 521 (1071)
Q Consensus 449 ~~e~Ar~i~e~al~~~P~------~~~lw~~~~~~-e~~~g~~~~a~~~r~l~e~Al~~~~d~~~~l~~~~~~~lw~~~l 521 (1071)
++++|.+.|++|+++.|. ++..+..-+-+ ..-.+++..+ ..++++|+..+| .++.-+....
T Consensus 477 qFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a---~~Ll~KA~e~Dp---------kce~A~~tla 544 (606)
T KOG0547|consen 477 QFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQA---ENLLRKAIELDP---------KCEQAYETLA 544 (606)
T ss_pred hHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHH---HHHHHHHHccCc---------hHHHHHHHHH
Confidence 999999999999999998 44333222222 2223455544 599999998766 3455566677
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCC
Q 001481 522 QQFLDLCGTIHDIRNAWNQHIKLFPH 547 (1071)
Q Consensus 522 ~~~e~~~G~~e~a~~~~~ra~~~~p~ 547 (1071)
.|+...|++++|..++++++.+-..
T Consensus 545 -q~~lQ~~~i~eAielFEksa~lArt 569 (606)
T KOG0547|consen 545 -QFELQRGKIDEAIELFEKSAQLART 569 (606)
T ss_pred -HHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999887543
No 29
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.75 E-value=1.3e-14 Score=171.76 Aligned_cols=509 Identities=13% Similarity=0.086 Sum_probs=319.4
Q ss_pred CCCCCCcchHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHCCCCH-----HHHHHHHHHHHHhCCH
Q 001481 15 PNSPVGFGKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCY-----GYWRKYADHKARLCSI 89 (1071)
Q Consensus 15 ~~~~~~~~~~~le~al~~nP~d~~~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P~s~-----~lW~~~a~~e~~~~~~ 89 (1071)
++.++++....|--.++..|+|+-..+.-+.+.-.. +++..+..+|.++|..+|.+. .+|+.+++ .++.
T Consensus 142 ~~~~~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynk--kdY~~al~yyk~al~inp~~~aD~rIgig~Cf~k----l~~~ 215 (1018)
T KOG2002|consen 142 GDKSMDDADAQFHFVLKQSPDNILALLGKARIAYNK--KDYRGALKYYKKALRINPACKADVRIGIGHCFWK----LGMS 215 (1018)
T ss_pred CCccHHHHHHHHHHHHhhCCcchHHHHHHHHHHhcc--ccHHHHHHHHHHHHhcCcccCCCccchhhhHHHh----ccch
Confidence 334477778899999999999999988887776665 788888888888888888652 44544443 3456
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhC--CChhHHHHHHHHHHHhcCCCCC--------------chHHHHHHHH
Q 001481 90 DKVVEVFERAVQSATYSVDVWFHYCSLSMSTF--EDPNDVRRLFKRALSFVGKDYL--------------CHTMWDKYIE 153 (1071)
Q Consensus 90 e~A~~lferAL~~~P~s~~lW~~y~~~~~~~~--~~~e~ar~l~erAL~~~~~~~~--------------s~~lW~~yi~ 153 (1071)
+.|+..|+|||.++|.++...+.++.+.+... ..+.++..++.+|....+.++. ...+|..+..
T Consensus 216 ~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ 295 (1018)
T KOG2002|consen 216 EKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEH 295 (1018)
T ss_pred hhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHH
Confidence 78888888888888888877777666655441 2355666666666665544432 1233333332
Q ss_pred --------------------HHHHccCHHHHHHHHHHHhcc-------CCccHHHHHHH---HHHHHHhHHHhhhhhchh
Q 001481 154 --------------------FEISQQRWSSLAQIFVQTLRF-------PSKKLHHYYDS---FKKLAGAWKEELECESDS 203 (1071)
Q Consensus 154 --------------------fe~~~~~~~~a~~iy~ral~~-------p~~~l~~~~~~---~~~~~~~~~e~l~~~~~~ 203 (1071)
-....|+++.|.+.|..+++. |..++..++.. ++...-.++..+....+.
T Consensus 296 ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~ 375 (1018)
T KOG2002|consen 296 AIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNN 375 (1018)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcch
Confidence 222357888888888888752 33344444432 222111111111100000
Q ss_pred -------------------hHHHHHHHhhcCCccCCcccchhhHHHhhhcCcch---h---HHHHHHHHH---------H
Q 001481 204 -------------------AMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSV---D---LVRSKAIQK---------Y 249 (1071)
Q Consensus 204 -------------------~~~~~~~~~~~~~l~~~~~~~e~~~~i~~~~d~~~---~---~~~a~~l~~---------~ 249 (1071)
..+.....+.+.. .....+.+.+..+..+.+... . +.++..+.. +
T Consensus 376 ~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~-~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~ 454 (1018)
T KOG2002|consen 376 YETMKILGCLYAHSAKKQEKRDKASNVLGKVL-EQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEV 454 (1018)
T ss_pred HHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHH-hcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHH
Confidence 0000001110000 001112222221111111000 0 000000000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCcCCCCCC---hhHHHHHHHHHHHHHHhCCHHHHHHHHHHhhcCCCCCHHHH
Q 001481 250 RFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLD---DIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFW 326 (1071)
Q Consensus 250 ~~~~~~~y~~a~~~~~~~~~fE~ai~~~~~~~~~~~---p~~~~~W~~y~~~~~~~g~~~~a~~~yerAL~~~p~~~~lW 326 (1071)
+--...+.-.......+...|..++.+... ....+ ..++.+-++++.+++..++++.|.+.|...+..+|.+.+.+
T Consensus 455 LNNvaslhf~~g~~~~A~~~f~~A~~~~~~-~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~y 533 (1018)
T KOG2002|consen 455 LNNVASLHFRLGNIEKALEHFKSALGKLLE-VANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAY 533 (1018)
T ss_pred HHhHHHHHHHhcChHHHHHHHHHHhhhhhh-hcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHH
Confidence 000000000111122333444444432100 00011 12344567778888899999999999999999999999999
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCh-hhHHHHHHHHHHHH-
Q 001481 327 MRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDS-RFIEKVTFKANMER- 404 (1071)
Q Consensus 327 ~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~~A~~~~~~al~~~~p-~~~~~w~~~a~le~- 404 (1071)
+.++.+....+...+|...+..++.+ ...+|++|-+++.++.....+..|.+-|...++.... +..-..+.+++++.
T Consensus 534 lRl~~ma~~k~~~~ea~~~lk~~l~~-d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~ 612 (1018)
T KOG2002|consen 534 LRLGCMARDKNNLYEASLLLKDALNI-DSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQ 612 (1018)
T ss_pred HHhhHHHHhccCcHHHHHHHHHHHhc-ccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHH
Confidence 99998888889999999999999986 7788999999999888887777777766666543221 23334455555433
Q ss_pred -----------HcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCChHHHHHH
Q 001481 405 -----------RLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLLLEE 473 (1071)
Q Consensus 405 -----------~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~~~P~~~~lw~~ 473 (1071)
+.+.+++|+.+|.++|.. +|.+--+-...|.++. ..|++.+|+.||.+..+.-.+..+.|++
T Consensus 613 ~l~~~~rn~ek~kk~~~KAlq~y~kvL~~------dpkN~yAANGIgiVLA-~kg~~~~A~dIFsqVrEa~~~~~dv~lN 685 (1018)
T KOG2002|consen 613 ALHNPSRNPEKEKKHQEKALQLYGKVLRN------DPKNMYAANGIGIVLA-EKGRFSEARDIFSQVREATSDFEDVWLN 685 (1018)
T ss_pred HhcccccChHHHHHHHHHHHHHHHHHHhc------Ccchhhhccchhhhhh-hccCchHHHHHHHHHHHHHhhCCceeee
Confidence 234567788888888877 6776667778888998 9999999999999998887788899999
Q ss_pred HHHHHHHcCCCCchhhHHHHHHHhhccCCcccccCChhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcc
Q 001481 474 LIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQQFLDLCGTIHDIRNAWNQHIKLFPHTVR 550 (1071)
Q Consensus 474 ~~~~e~~~g~~~~a~~~r~l~e~Al~~~~d~~~~l~~~~~~~lw~~~l~~~e~~~G~~e~a~~~~~ra~~~~p~~~~ 550 (1071)
.+..+...|.+..|. ..|+.+++++ ...+..++..... +.....|.+..+..+.-+|+.+.|...-
T Consensus 686 lah~~~e~~qy~~AI---qmYe~~lkkf-------~~~~~~~vl~~La-ra~y~~~~~~eak~~ll~a~~~~p~~~~ 751 (1018)
T KOG2002|consen 686 LAHCYVEQGQYRLAI---QMYENCLKKF-------YKKNRSEVLHYLA-RAWYEAGKLQEAKEALLKARHLAPSNTS 751 (1018)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHh-------cccCCHHHHHHHH-HHHHHhhhHHHHHHHHHHHHHhCCccch
Confidence 999999999887765 8999999743 3344455555555 6667889999999999999999999765
No 30
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=5.6e-15 Score=162.87 Aligned_cols=417 Identities=12% Similarity=0.017 Sum_probs=268.2
Q ss_pred chHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH-HH
Q 001481 22 GKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFER-AV 100 (1071)
Q Consensus 22 ~~~~le~al~~nP~d~~~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P~s~~lW~~~a~~e~~~~~~e~A~~lfer-AL 100 (1071)
.++.|..+|...|+-.-.+-.....|+.. +++++..+..-++|+.+|.-++....-+...+..|++.+|..-..- ||
T Consensus 134 AIkyY~~AI~l~p~epiFYsNraAcY~~l--gd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci 211 (606)
T KOG0547|consen 134 AIKYYTQAIELCPDEPIFYSNRAACYESL--GDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKFDEALFDVTVLCI 211 (606)
T ss_pred HHHHHHHHHhcCCCCchhhhhHHHHHHHH--hhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHHHhhhHHHH
Confidence 46789999999999777777777778888 9999999999999999999999999999999999998876543221 11
Q ss_pred HhcCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHH--hcCCCCCchHHHHHHHHHHHHc--------c--CHHHHHHHH
Q 001481 101 QSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALS--FVGKDYLCHTMWDKYIEFEISQ--------Q--RWSSLAQIF 168 (1071)
Q Consensus 101 ~~~P~s~~lW~~y~~~~~~~~~~~e~ar~l~erAL~--~~~~~~~s~~lW~~yi~fe~~~--------~--~~~~a~~iy 168 (1071)
-..=.+..+-...=+.+.+ .+++..++-++ ..|..+ +...-..|....... . .......-+
T Consensus 212 ~~~F~n~s~~~~~eR~Lkk------~a~~ka~e~~k~nr~p~lP-S~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l 284 (606)
T KOG0547|consen 212 LEGFQNASIEPMAERVLKK------QAMKKAKEKLKENRPPVLP-SATFIASYFGSFHADPKPLFDNKSDKSDAALAEAL 284 (606)
T ss_pred hhhcccchhHHHHHHHHHH------HHHHHHHHhhcccCCCCCC-cHHHHHHHHhhccccccccccCCCccchhhHHHHH
Confidence 1100111111111111111 13333333333 112212 333333333322111 0 001111111
Q ss_pred HHHhccCCccHHHHHHHHHHHHHhHHHhhhhhchhhHHHHHHHhhcCCccCCccc--chhhHHHhhhcCcchhHHHHHHH
Q 001481 169 VQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKD--DETSSVIKDLLDPSVDLVRSKAI 246 (1071)
Q Consensus 169 ~ral~~p~~~l~~~~~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~l~~~~~~--~e~~~~i~~~~d~~~~~~~a~~l 246 (1071)
++..+.....+...+..+.+.... .+...+.++ .+++.+ +.++
T Consensus 285 ~~l~~~~~e~Y~~a~~~~te~~~~----------------------~~~~~~~n~~d~~le~~-------------A~al 329 (606)
T KOG0547|consen 285 EALEKGLEEGYLKAYDKATEECLG----------------------SESSLSVNEIDAELEYM-------------AEAL 329 (606)
T ss_pred HHHHhhCchhHHHHHHHHHHHhhh----------------------hhhhccccccchhHHHH-------------HHHH
Confidence 111111111111111111111000 000000111 111100 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCCCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHhhcCCCCCHHHH
Q 001481 247 QKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFW 326 (1071)
Q Consensus 247 ~~~~~~~~~~y~~a~~~~~~~~~fE~ai~~~~~~~~~~~p~~~~~W~~y~~~~~~~g~~~~a~~~yerAL~~~p~~~~lW 326 (1071)
..+.-++--..........|..+|. ++|....+++.++..+....+..+-...|.+|...+|.++++|
T Consensus 330 ----~~~gtF~fL~g~~~~a~~d~~~~I~--------l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvY 397 (606)
T KOG0547|consen 330 ----LLRGTFHFLKGDSLGAQEDFDAAIK--------LDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVY 397 (606)
T ss_pred ----HHhhhhhhhcCCchhhhhhHHHHHh--------cCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchh
Confidence 0000000001112223344555554 4566667788899888888899999999999999999999999
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHc
Q 001481 327 MRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRL 406 (1071)
Q Consensus 327 ~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~~A~~~~~~al~~~~p~~~~~w~~~a~le~~~ 406 (1071)
+..+.++.-.+++++|..-|++|+++ .|.+.-.+...+-.+.+.++++++...|+.++ ...|.+++++..++.++...
T Consensus 398 yHRgQm~flL~q~e~A~aDF~Kai~L-~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~k-kkFP~~~Evy~~fAeiLtDq 475 (606)
T KOG0547|consen 398 YHRGQMRFLLQQYEEAIADFQKAISL-DPENAYAYIQLCCALYRQHKIAESMKTFEEAK-KKFPNCPEVYNLFAEILTDQ 475 (606)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHhhc-ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCCchHHHHHHHHHhhH
Confidence 99999999999999999999999997 44444455556666788999999999999998 56899999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCCCc
Q 001481 407 GNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLLLEELIKFTMVHGGRSH 486 (1071)
Q Consensus 407 g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~~~P~~~~lw~~~~~~e~~~g~~~~ 486 (1071)
++++.|.+.|++|+++-+......-.+-.+++.|.+...-.+|+..|..++++|++.+|.+...+..++.|+...|+.++
T Consensus 476 qqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~e 555 (606)
T KOG0547|consen 476 QQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDE 555 (606)
T ss_pred HhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHH
Confidence 99999999999999982111111114555666666655456999999999999999999999999999999999998887
Q ss_pred hhhHHHHHHHhhc
Q 001481 487 ISIVDAVISNALY 499 (1071)
Q Consensus 487 a~~~r~l~e~Al~ 499 (1071)
+. ++|++++.
T Consensus 556 Ai---elFEksa~ 565 (606)
T KOG0547|consen 556 AI---ELFEKSAQ 565 (606)
T ss_pred HH---HHHHHHHH
Confidence 75 99999874
No 31
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.74 E-value=8e-15 Score=171.52 Aligned_cols=301 Identities=14% Similarity=0.153 Sum_probs=214.6
Q ss_pred HHHHhCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhcCCCCC-chHHHHHHHHHHHHccC
Q 001481 82 HKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYL-CHTMWDKYIEFEISQQR 160 (1071)
Q Consensus 82 ~e~~~~~~e~A~~lferAL~~~P~s~~lW~~y~~~~~~~~~~~e~ar~l~erAL~~~~~~~~-s~~lW~~yi~fe~~~~~ 160 (1071)
.....+++++|..+|+++++..|.++.+|...+.++... +++++|..+|++++........ ....|...+......|+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRR-GEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHc-CcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 345668889999999999999999999999888888877 8899999998888764211100 00122222222222333
Q ss_pred HHHHHHHHHHHhccCCccHHHHHHHHHHHHHhHHHhhhhhchhhHHHHHHHhhcCCccCCcccchhhHHHhhhcCcchhH
Q 001481 161 WSSLAQIFVQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDL 240 (1071)
Q Consensus 161 ~~~a~~iy~ral~~p~~~l~~~~~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~i~~~~d~~~~~ 240 (1071)
++.+..+|.+++.
T Consensus 123 ~~~A~~~~~~~l~------------------------------------------------------------------- 135 (389)
T PRK11788 123 LDRAEELFLQLVD------------------------------------------------------------------- 135 (389)
T ss_pred HHHHHHHHHHHHc-------------------------------------------------------------------
Confidence 3333333333222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCCCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHhhcCCC
Q 001481 241 VRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCA 320 (1071)
Q Consensus 241 ~~a~~l~~~~~~~~~~y~~a~~~~~~~~~fE~ai~~~~~~~~~~~p~~~~~W~~y~~~~~~~g~~~~a~~~yerAL~~~p 320 (1071)
..|.....+..++..+...|++++|+.+|++++...|
T Consensus 136 -------------------------------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 172 (389)
T PRK11788 136 -------------------------------------------EGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGG 172 (389)
T ss_pred -------------------------------------------CCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcC
Confidence 1233344566666666778888888888888887665
Q ss_pred CC-----HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhCCHHHHHHHHHHHhhccChhh-HH
Q 001481 321 DY-----PEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRF-IE 394 (1071)
Q Consensus 321 ~~-----~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~~A~~~~~~al~~~~p~~-~~ 394 (1071)
.. ..+|..++..+...|++++|..+|+++++. .|.....++.++.++...|++++|..+|.+++ ...|.+ ..
T Consensus 173 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~-~~~p~~~~~ 250 (389)
T PRK11788 173 DSLRVEIAHFYCELAQQALARGDLDAARALLKKALAA-DPQCVRASILLGDLALAQGDYAAAIEALERVE-EQDPEYLSE 250 (389)
T ss_pred CcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhH-CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHChhhHHH
Confidence 54 236677888888899999999999999986 56666788888999999999999999999998 455554 45
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCChHHHHHHH
Q 001481 395 KVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLLLEEL 474 (1071)
Q Consensus 395 ~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~~~P~~~~lw~~~ 474 (1071)
+|..++.++...|++++|+.+|+++++. .|... ++..+|.++. ..|++++|+.+|+++++.+|++..+...+
T Consensus 251 ~~~~l~~~~~~~g~~~~A~~~l~~~~~~------~p~~~-~~~~la~~~~-~~g~~~~A~~~l~~~l~~~P~~~~~~~l~ 322 (389)
T PRK11788 251 VLPKLMECYQALGDEAEGLEFLRRALEE------YPGAD-LLLALAQLLE-EQEGPEAAQALLREQLRRHPSLRGFHRLL 322 (389)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCch-HHHHHHHHHH-HhCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 6788888999999999999999999987 55544 4488888887 89999999999999999999988655433
Q ss_pred HHHHHH--cCCCCc-hhhHHHHHHHhhccCCc
Q 001481 475 IKFTMV--HGGRSH-ISIVDAVISNALYSRPD 503 (1071)
Q Consensus 475 ~~~e~~--~g~~~~-a~~~r~l~e~Al~~~~d 503 (1071)
..+... .|+..+ ...++..+++.+...|+
T Consensus 323 ~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 323 DYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 333322 334433 22345666667766664
No 32
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.73 E-value=1.4e-13 Score=163.27 Aligned_cols=480 Identities=10% Similarity=0.066 Sum_probs=312.0
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcC
Q 001481 25 GLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSAT 104 (1071)
Q Consensus 25 ~le~al~~nP~d~~~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P~s~~lW~~~a~~e~~~~~~e~A~~lferAL~~~P 104 (1071)
.|..+-+.+-.+...|+.-.-+|...++..++.|...|...+...|.+.-..+--+.+....++|-.|..+|.+||..+|
T Consensus 116 ~~~~A~ki~m~~~~~l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp 195 (1018)
T KOG2002|consen 116 LFDLADKIDMYEDSHLLVQRGFLLLEGDKSMDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINP 195 (1018)
T ss_pred HhhHHHHhhccCcchhhhhhhhhhhcCCccHHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCc
Confidence 56677777777666676666655544223468999999999999999999999999999999999999999999999987
Q ss_pred CCH-----HHHHHHHHHHHhhCCChhHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHc---cCHHHHHHHHHHHhccCC
Q 001481 105 YSV-----DVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQ---QRWSSLAQIFVQTLRFPS 176 (1071)
Q Consensus 105 ~s~-----~lW~~y~~~~~~~~~~~e~ar~l~erAL~~~~~~~~s~~lW~~yi~fe~~~---~~~~~a~~iy~ral~~p~ 176 (1071)
... -+|..++++ ++.+.|+..|+||+...|. +.........+.... ..+..+..++.++..+-.
T Consensus 196 ~~~aD~rIgig~Cf~kl-----~~~~~a~~a~~ralqLdp~---~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~ 267 (1018)
T KOG2002|consen 196 ACKADVRIGIGHCFWKL-----GMSEKALLAFERALQLDPT---CVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENN 267 (1018)
T ss_pred ccCCCccchhhhHHHhc-----cchhhHHHHHHHHHhcChh---hHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcC
Confidence 753 467777766 7888999999999998875 344444444444433 345566666677654221
Q ss_pred c----------------cHHHHHHHHHHHHHhH-HHhhhhhchhhHHHHHHHhhcCCccCCcccchhhHHHhhhcCcchh
Q 001481 177 K----------------KLHHYYDSFKKLAGAW-KEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVD 239 (1071)
Q Consensus 177 ~----------------~l~~~~~~~~~~~~~~-~e~l~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~i~~~~d~~~~ 239 (1071)
. ++...|..+...+... .+.+.++. +..+... +....+.+....-+....+.
T Consensus 268 ~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes-------~Y~~gRs----~Ha~Gd~ekA~~yY~~s~k~ 336 (1018)
T KOG2002|consen 268 ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAES-------FYQLGRS----YHAQGDFEKAFKYYMESLKA 336 (1018)
T ss_pred CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHH-------HHHHHHH----HHhhccHHHHHHHHHHHHcc
Confidence 1 2222222222111110 00111000 0000000 00000000000000000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCCCCCChhHHHHHHHHHHHHHHhC----CHHHHHHHHHHh
Q 001481 240 LVRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQG----DFDWVVKLYERC 315 (1071)
Q Consensus 240 ~~~a~~l~~~~~~~~~~y~~a~~~~~~~~~fE~ai~~~~~~~~~~~p~~~~~W~~y~~~~~~~g----~~~~a~~~yerA 315 (1071)
.....+..+. -..++|-+-.++.....+||+.++ ..|++.+...-++.++...+ ..+.|..+..++
T Consensus 337 -~~d~~~l~~~-GlgQm~i~~~dle~s~~~fEkv~k--------~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~ 406 (1018)
T KOG2002|consen 337 -DNDNFVLPLV-GLGQMYIKRGDLEESKFCFEKVLK--------QLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKV 406 (1018)
T ss_pred -CCCCcccccc-chhHHHHHhchHHHHHHHHHHHHH--------hCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHH
Confidence 0000011110 112233333445556667777665 46777777777777765553 578999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhc---cch-HHHHHHHHHHHHhCCHHHHHHHHHHHhhccC--
Q 001481 316 LIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLK---RLP-VIHLFNARYKEQIGDTSAARAAFPESYIDSD-- 389 (1071)
Q Consensus 316 L~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~---~~p-~i~~~~a~~e~~~g~~~~A~~~~~~al~~~~-- 389 (1071)
+...|.+.++|+.++.+++..+ .-.+..+|.+|+.++.. ..| ++....|.+....|.+++|+..|+.|+..+.
T Consensus 407 ~~~~~~d~~a~l~laql~e~~d-~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~ 485 (1018)
T KOG2002|consen 407 LEQTPVDSEAWLELAQLLEQTD-PWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEV 485 (1018)
T ss_pred HhcccccHHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhh
Confidence 9999999999999999777654 55559999999976432 233 5666778888899999999999999985422
Q ss_pred --hh-----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Q 001481 390 --SR-----FIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIK 462 (1071)
Q Consensus 390 --p~-----~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~ 462 (1071)
++ .+.+-++++.++...++++.|...|+..++. .|..-..|+.+|.+.- ..+...+|...+..++.
T Consensus 486 ~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke------hp~YId~ylRl~~ma~-~k~~~~ea~~~lk~~l~ 558 (1018)
T KOG2002|consen 486 ANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE------HPGYIDAYLRLGCMAR-DKNNLYEASLLLKDALN 558 (1018)
T ss_pred cCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH------CchhHHHHHHhhHHHH-hccCcHHHHHHHHHHHh
Confidence 21 1334778899999999999999999999999 8999999999996665 88999999999999999
Q ss_pred hCCChHHHHHHHHHHHHHcCCCCchh-hHHHHHHHhhccCCcccccCChhhHHHHHHHHHHHHH-------HhcCCHHHH
Q 001481 463 HVPNCKLLLEELIKFTMVHGGRSHIS-IVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQQFL-------DLCGTIHDI 534 (1071)
Q Consensus 463 ~~P~~~~lw~~~~~~e~~~g~~~~a~-~~r~l~e~Al~~~~d~~~~l~~~~~~~lw~~~l~~~e-------~~~G~~e~a 534 (1071)
.+..++.+|..+.+++.....+.-+. ..+.++.+-... + ++-....|-+.|++.+. ...+..+.|
T Consensus 559 ~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~-~------D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KA 631 (1018)
T KOG2002|consen 559 IDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTK-T------DAYSLIALGNVYIQALHNPSRNPEKEKKHQEKA 631 (1018)
T ss_pred cccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccC-C------chhHHHHhhHHHHHHhcccccChHHHHHHHHHH
Confidence 99999999999998888766555443 112344443321 1 11223345555552232 234566777
Q ss_pred HHHHHHHHHhCCCC
Q 001481 535 RNAWNQHIKLFPHT 548 (1071)
Q Consensus 535 ~~~~~ra~~~~p~~ 548 (1071)
+.+|.++++..|++
T Consensus 632 lq~y~kvL~~dpkN 645 (1018)
T KOG2002|consen 632 LQLYGKVLRNDPKN 645 (1018)
T ss_pred HHHHHHHHhcCcch
Confidence 77788888877775
No 33
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.73 E-value=9.4e-14 Score=163.82 Aligned_cols=495 Identities=16% Similarity=0.100 Sum_probs=310.3
Q ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 001481 23 KQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQS 102 (1071)
Q Consensus 23 ~~~le~al~~nP~d~~~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P~s~~lW~~~a~~e~~~~~~e~A~~lferAL~~ 102 (1071)
.+.+.++|+.+|.++.+|.-|+..++.. |+++++....-.|--.+|.+.++|+.++++-.+.++++.|+-+|.|||..
T Consensus 159 ~~i~~EvIkqdp~~~~ay~tL~~IyEqr--Gd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~ 236 (895)
T KOG2076|consen 159 EEILMEVIKQDPRNPIAYYTLGEIYEQR--GDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQA 236 (895)
T ss_pred HHHHHHHHHhCccchhhHHHHHHHHHHc--ccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Confidence 4589999999999999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhcCCC-C--CchHHHHHHHHHHHHccCHHHHHHHHHHHhcc-----
Q 001481 103 ATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKD-Y--LCHTMWDKYIEFEISQQRWSSLAQIFVQTLRF----- 174 (1071)
Q Consensus 103 ~P~s~~lW~~y~~~~~~~~~~~e~ar~l~erAL~~~~~~-~--~s~~lW~~yi~fe~~~~~~~~a~~iy~ral~~----- 174 (1071)
.|.+.++...++.++.++ |+...|...|.+++..+|.. + ....||...-.|.. .+..+.|.+++..++..
T Consensus 237 ~p~n~~~~~ers~L~~~~-G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~-~~~~e~a~~~le~~~s~~~~~~ 314 (895)
T KOG2076|consen 237 NPSNWELIYERSSLYQKT-GDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFIT-HNERERAAKALEGALSKEKDEA 314 (895)
T ss_pred CCcchHHHHHHHHHHHHh-ChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHhhccccc
Confidence 999999999999999999 99999999999999998821 1 02345554433433 33348888888888751
Q ss_pred CCccH---HHHHHHHHHHHHhHHHhhh-----hhchhhHHHHHH----------HhhcCCc---c--------CCcccch
Q 001481 175 PSKKL---HHYYDSFKKLAGAWKEELE-----CESDSAMEFQSE----------LVLEGEV---P--------AYYKDDE 225 (1071)
Q Consensus 175 p~~~l---~~~~~~~~~~~~~~~e~l~-----~~~~~~~~~~~~----------~~~~~~l---~--------~~~~~~e 225 (1071)
...++ ..+|..+..+-........ ++++...-.+.+ .+.++.. + .++++.+
T Consensus 315 ~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e 394 (895)
T KOG2076|consen 315 SLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERE 394 (895)
T ss_pred cccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccc
Confidence 11122 2223333332222111110 001110000000 0000000 0 0001111
Q ss_pred hhHHHhhhcCcchhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcccCcCCCCCChhHHHHHHHHHHHHHHhCC
Q 001481 226 TSSVIKDLLDPSVDLVRSKAIQKYR-FIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGD 304 (1071)
Q Consensus 226 ~~~~i~~~~d~~~~~~~a~~l~~~~-~~~~~~y~~a~~~~~~~~~fE~ai~~~~~~~~~~~p~~~~~W~~y~~~~~~~g~ 304 (1071)
....+..++- ....+ .....+|-...+.+..+..|..+++--...+....-.+..+|...+.++...|.
T Consensus 395 ~~e~ll~~l~----------~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e 464 (895)
T KOG2076|consen 395 LLEALLHFLV----------EDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGE 464 (895)
T ss_pred hHHHHHHHHH----------HhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhh
Confidence 0000000000 00000 112223333333333444444444310000000111335799999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhh----ccc---h--HHHHHHHHHHHHhCCHH
Q 001481 305 FDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFL----KRL---P--VIHLFNARYKEQIGDTS 375 (1071)
Q Consensus 305 ~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~----~~~---p--~i~~~~a~~e~~~g~~~ 375 (1071)
+++|+..|+++|...|.+.++.+.++.++...|+.|+|.++++....- . +.+ | .+....+.++...|+.+
T Consensus 465 ~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~-D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E 543 (895)
T KOG2076|consen 465 YEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINP-DGRNAEACAWEPERRILAHRCDILFQVGKRE 543 (895)
T ss_pred HHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCC-CccchhhccccHHHHHHHHHHHHHHHhhhHH
Confidence 999999999999999999999999999999999999999999874421 1 001 1 23444444555555544
Q ss_pred HHHH----HHHHH-----h-----h--------------------------c-----------cCh----------hhHH
Q 001481 376 AARA----AFPES-----Y-----I--------------------------D-----------SDS----------RFIE 394 (1071)
Q Consensus 376 ~A~~----~~~~a-----l-----~--------------------------~-----------~~p----------~~~~ 394 (1071)
+-.. +.... + + . .++ -+.+
T Consensus 544 ~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsid 623 (895)
T KOG2076|consen 544 EFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSID 623 (895)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHH
Confidence 3111 11100 0 0 0 000 0122
Q ss_pred HH----HHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHH-----HHHHHHHHHHhhcCCHHHHHHHHHHHHhh--
Q 001481 395 KV----TFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPL-----LYVQFSRLTYTTTGSADNARDILIDGIKH-- 463 (1071)
Q Consensus 395 ~w----~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~-----l~~~~A~~~~~~~g~~e~Ar~i~e~al~~-- 463 (1071)
-| ..++..+.+.+.+.+|..+...|+.... +....+ -|+.++..+ ..+++..|....+-.+..
T Consensus 624 dwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~----f~~~~~~~k~l~~~~l~~s~--~~~d~~~a~~~lR~~i~~~~ 697 (895)
T KOG2076|consen 624 DWFELFRELILSLAKLQRVQEALSVVFTALEAYI----FFQDSEIRKELQFLGLKASL--YARDPGDAFSYLRSVITQFQ 697 (895)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhh----hhccHHHHHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHHHh
Confidence 34 4445556678889999999998887631 122222 244444444 489999999999998888
Q ss_pred ---CCChHHHHHHHHHHHHHcCCCCchhhHHHHHHHhhccCCcccccCChhhHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 001481 464 ---VPNCKLLLEELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQQFLDLCGTIHDIRNAWNQ 540 (1071)
Q Consensus 464 ---~P~~~~lw~~~~~~e~~~g~~~~a~~~r~l~e~Al~~~~d~~~~l~~~~~~~lw~~~l~~~e~~~G~~e~a~~~~~r 540 (1071)
.+.-..+|..+.......+..... ...+.+++..+++ +...+...+. -+....|.+..|...|-|
T Consensus 698 ~~~~~~q~~l~n~~~s~~~~~~q~v~~---~R~~~~~~~~~~~--------~~~~l~~i~g-h~~~~~~s~~~Al~~y~r 765 (895)
T KOG2076|consen 698 FYLDVYQLNLWNLDFSYFSKYGQRVCY---LRLIMRLLVKNKD--------DTPPLALIYG-HNLFVNASFKHALQEYMR 765 (895)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhccCcc--------CCcceeeeec-hhHhhccchHHHHHHHHH
Confidence 555667888666666666643322 3455556655443 3344555666 777889999999999999
Q ss_pred HHHhCCCCcc
Q 001481 541 HIKLFPHTVR 550 (1071)
Q Consensus 541 a~~~~p~~~~ 550 (1071)
+.+..|+++.
T Consensus 766 a~~~~pd~Pl 775 (895)
T KOG2076|consen 766 AFRQNPDSPL 775 (895)
T ss_pred HHHhCCCCcH
Confidence 9999999876
No 34
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.72 E-value=1.2e-14 Score=170.12 Aligned_cols=292 Identities=11% Similarity=0.054 Sum_probs=224.7
Q ss_pred CcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHhhCCChhHHH
Q 001481 53 DDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYS----VDVWFHYCSLSMSTFEDPNDVR 128 (1071)
Q Consensus 53 ~~~~~a~~vyeraL~~~P~s~~lW~~~a~~e~~~~~~e~A~~lferAL~~~P~s----~~lW~~y~~~~~~~~~~~e~ar 128 (1071)
+++++|...|+++++.+|.+..+|..++.++...|++++|..+|++++...+.. ...|..++..+... +++++|.
T Consensus 49 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~-g~~~~A~ 127 (389)
T PRK11788 49 EQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA-GLLDRAE 127 (389)
T ss_pred CChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC-CCHHHHH
Confidence 899999999999999999999999999999999999999999999999863322 24677778777777 9999999
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhccCCccHHHHHHHHHHHHHhHHHhhhhhchhhHHHH
Q 001481 129 RLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQ 208 (1071)
Q Consensus 129 ~l~erAL~~~~~~~~s~~lW~~yi~fe~~~~~~~~a~~iy~ral~~p~~~l~~~~~~~~~~~~~~~e~l~~~~~~~~~~~ 208 (1071)
.+|++++...+. ....|..++......++++.+..+|.+++......
T Consensus 128 ~~~~~~l~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~------------------------------ 174 (389)
T PRK11788 128 ELFLQLVDEGDF---AEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDS------------------------------ 174 (389)
T ss_pred HHHHHHHcCCcc---hHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCc------------------------------
Confidence 999999976443 34566666666666666666666666554321000
Q ss_pred HHHhhcCCccCCcccchhhHHHhhhcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCCCCCChhH
Q 001481 209 SELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQ 288 (1071)
Q Consensus 209 ~~~~~~~~l~~~~~~~e~~~~i~~~~d~~~~~~~a~~l~~~~~~~~~~y~~a~~~~~~~~~fE~ai~~~~~~~~~~~p~~ 288 (1071)
.....
T Consensus 175 ---------------------------------------------------------------------------~~~~~ 179 (389)
T PRK11788 175 ---------------------------------------------------------------------------LRVEI 179 (389)
T ss_pred ---------------------------------------------------------------------------chHHH
Confidence 00000
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhccc-hHHHHHHHHH
Q 001481 289 LKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRL-PVIHLFNARY 367 (1071)
Q Consensus 289 ~~~W~~y~~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~-p~i~~~~a~~ 367 (1071)
...|..++..+...|++++|+.+|++++...|.....|+.++.++...|++++|..+|++++.. .+.. +.++...+.+
T Consensus 180 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~~l~~~ 258 (389)
T PRK11788 180 AHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQ-DPEYLSEVLPKLMEC 258 (389)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-ChhhHHHHHHHHHHH
Confidence 1134455566667899999999999999999999999999999999999999999999999986 3322 3456777888
Q ss_pred HHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHh-h
Q 001481 368 KEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYT-T 446 (1071)
Q Consensus 368 e~~~g~~~~A~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~-~ 446 (1071)
+...|++++|...|.+++ ...|+.. ++..++.++.+.|++++|+.+|+++++. .|....+...++..+.. .
T Consensus 259 ~~~~g~~~~A~~~l~~~~-~~~p~~~-~~~~la~~~~~~g~~~~A~~~l~~~l~~------~P~~~~~~~l~~~~~~~~~ 330 (389)
T PRK11788 259 YQALGDEAEGLEFLRRAL-EEYPGAD-LLLALAQLLEEQEGPEAAQALLREQLRR------HPSLRGFHRLLDYHLAEAE 330 (389)
T ss_pred HHHcCCHHHHHHHHHHHH-HhCCCch-HHHHHHHHHHHhCCHHHHHHHHHHHHHh------CcCHHHHHHHHHHhhhccC
Confidence 899999999999999998 5567654 4588899999999999999999999998 67766555444444321 2
Q ss_pred cCCHHHHHHHHHHHHh
Q 001481 447 TGSADNARDILIDGIK 462 (1071)
Q Consensus 447 ~g~~e~Ar~i~e~al~ 462 (1071)
.|+.++|..++++.++
T Consensus 331 ~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 331 EGRAKESLLLLRDLVG 346 (389)
T ss_pred CccchhHHHHHHHHHH
Confidence 4577777777776664
No 35
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=99.72 E-value=7.6e-15 Score=167.65 Aligned_cols=446 Identities=11% Similarity=0.121 Sum_probs=278.0
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc
Q 001481 24 QGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSA 103 (1071)
Q Consensus 24 ~~le~al~~nP~d~~~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P~s~~lW~~~a~~e~~~~~~e~A~~lferAL~~~ 103 (1071)
......+...|++.+.|..+.... .....|..++.--......+.++.+|...|...
T Consensus 19 ~~~n~~~~~~p~~~~~we~~~~~~-----------------------~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~ky 75 (577)
T KOG1258|consen 19 STDNTSLTKYPDSLDYWEILSNDS-----------------------LDFDAWTTLIQENDSIEDVDALREVYDIFLSKY 75 (577)
T ss_pred CccchhhhhCcchhhHhhccccch-----------------------hcccchHHHHhccCchhHHHHHHHHHHHHHhhC
Confidence 356678888888888887765522 123456555554434445688999999999999
Q ss_pred CCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHH-ccCHHHHHHHHHHHhccCC--ccHH
Q 001481 104 TYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEIS-QQRWSSLAQIFVQTLRFPS--KKLH 180 (1071)
Q Consensus 104 P~s~~lW~~y~~~~~~~~~~~e~ar~l~erAL~~~~~~~~s~~lW~~yi~fe~~-~~~~~~a~~iy~ral~~p~--~~l~ 180 (1071)
|.+.-.|..|+.++.+. +..+++.++|+|++..+|. |..+|..|+.|... .++.+.+++.|++|+..-- ..-.
T Consensus 76 Pl~~gyW~kfA~~E~kl-g~~~~s~~Vfergv~aip~---SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~ 151 (577)
T KOG1258|consen 76 PLCYGYWKKFADYEYKL-GNAENSVKVFERGVQAIPL---SVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSD 151 (577)
T ss_pred ccHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhcc
Confidence 99999999999999998 9999999999999999985 88999999999876 4677889999999975211 1123
Q ss_pred HHHHHHHHHHHhHHHhhhhhchhhHHHHHHHhhcCCccCCcccchhhHHHhhhcCcchhHHHHHHHHHHHHHHHHHHHHH
Q 001481 181 HYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEA 260 (1071)
Q Consensus 181 ~~~~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~i~~~~d~~~~~~~a~~l~~~~~~~~~~y~~a 260 (1071)
.+|+.|-+|+..-.. . ..+..+++.+++-.+. .++.. ...+...++..+.. .+ ...
T Consensus 152 ~lWdkyie~en~qks-~-----k~v~~iyeRileiP~~-~~~~~--f~~f~~~l~~~~~~----~l-----------~~~ 207 (577)
T KOG1258|consen 152 PLWDKYIEFENGQKS-W-----KRVANIYERILEIPLH-QLNRH--FDRFKQLLNQNEEK----IL-----------LSI 207 (577)
T ss_pred HHHHHHHHHHhcccc-H-----HHHHHHHHHHHhhhhh-HhHHH--HHHHHHHHhcCChh----hh-----------cCH
Confidence 445555555532110 0 0111122222211100 00000 00000000000000 00 000
Q ss_pred HHHHHHHHHHHHHhcccCcCCCCCChhHHHHHHHHHHHHHHhC-CHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCH
Q 001481 261 SQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQG-DFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGR 339 (1071)
Q Consensus 261 ~~~~~~~~~fE~ai~~~~~~~~~~~p~~~~~W~~y~~~~~~~g-~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~ 339 (1071)
..+...+........ .+......+.|...+......+ ..+.+.....+.+. ....+|.......+
T Consensus 208 d~~~~l~~~~~~~~~------~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~---~~~~~~~~s~~~~~----- 273 (577)
T KOG1258|consen 208 DELIQLRSDVAERSK------ITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVS---IHEKVYQKSEEEEE----- 273 (577)
T ss_pred HHHHHHhhhHHhhhh------cccccChhHHHHHHHhhccCccchhhHHHHHHHHHHH---HHHHHHHhhHhHHH-----
Confidence 000001111110000 0011123445555555443322 23333333333322 23344444444333
Q ss_pred HHHHHHHHHHHHHh----hccch---HHHHHHHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHH
Q 001481 340 EIASYALDRATQIF----LKRLP---VIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAA 412 (1071)
Q Consensus 340 e~A~~il~rAl~~~----~~~~p---~i~~~~a~~e~~~g~~~~A~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A 412 (1071)
.+..++..++.. .|-.+ ..|..|.+|++..|+++.+..+|++++ .....+.+.|++|+.+....|+.+-|
T Consensus 274 --kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercl-i~cA~Y~efWiky~~~m~~~~~~~~~ 350 (577)
T KOG1258|consen 274 --KRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCL-IPCALYDEFWIKYARWMESSGDVSLA 350 (577)
T ss_pred --HHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHH-hHHhhhHHHHHHHHHHHHHcCchhHH
Confidence 334444444321 01111 578888999999999999999999998 33456788899999988888999999
Q ss_pred HHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCCCchhhHHH
Q 001481 413 CDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLLLEELIKFTMVHGGRSHISIVDA 492 (1071)
Q Consensus 413 ~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~~~P~~~~lw~~~~~~e~~~g~~~~a~~~r~ 492 (1071)
..++.++.+.. .+..+.+.+.+|.+++ ..|+++.|+.+|.+....+|+...+-..++.+++..|+...+.....
T Consensus 351 ~~~~~~~~~i~-----~k~~~~i~L~~a~f~e-~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~ 424 (577)
T KOG1258|consen 351 NNVLARACKIH-----VKKTPIIHLLEARFEE-SNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNE 424 (577)
T ss_pred HHHHHhhhhhc-----CCCCcHHHHHHHHHHH-hhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHH
Confidence 99999988874 5778889999999987 88999999999999999888888888889999999888877653333
Q ss_pred HHHHhhccCCcccccCChhhHHHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHhCCCCcc
Q 001481 493 VISNALYSRPDVLKVFSLEDVEDISSLYLQQFL-DLCGTIHDIRNAWNQHIKLFPHTVR 550 (1071)
Q Consensus 493 l~e~Al~~~~d~~~~l~~~~~~~lw~~~l~~~e-~~~G~~e~a~~~~~ra~~~~p~~~~ 550 (1071)
++...+. +.+.....+.+...+. +|- ...++.+.|+.++..++..+|++..
T Consensus 425 l~s~~~~------~~~~~~i~~~l~~~~~-r~~~~i~~d~~~a~~~l~~~~~~~~~~k~ 476 (577)
T KOG1258|consen 425 LYSSIYE------GKENNGILEKLYVKFA-RLRYKIREDADLARIILLEANDILPDCKV 476 (577)
T ss_pred HHHHhcc------cccCcchhHHHHHHHH-HHHHHHhcCHHHHHHHHHHhhhcCCccHH
Confidence 3333321 2444445555666666 555 3568899999999999999988665
No 36
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.72 E-value=1.7e-13 Score=174.64 Aligned_cols=409 Identities=10% Similarity=0.031 Sum_probs=264.3
Q ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcCCCHHHHHH
Q 001481 35 LDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFP--LCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFH 112 (1071)
Q Consensus 35 ~d~~~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P--~s~~lW~~~a~~e~~~~~~e~A~~lferAL~~~P~s~~lW~~ 112 (1071)
.++..++.++..+.+. |.+++|+.+|+.+.+... .+.-++..++....+.+.+++|..+|+.... .+...|..
T Consensus 368 ~~~~~~~~~y~~l~r~--G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~---pd~~Tyn~ 442 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRD--GRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN---PTLSTFNM 442 (1060)
T ss_pred CCchHHHHHHHHHHHC--cCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC---CCHHHHHH
Confidence 4455566666555555 788888888888877653 2334455566667777888888888876654 36777777
Q ss_pred HHHHHHhhCCChhHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhccCCc-cHHHHHHHHHHHHH
Q 001481 113 YCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSK-KLHHYYDSFKKLAG 191 (1071)
Q Consensus 113 y~~~~~~~~~~~e~ar~l~erAL~~~~~~~~s~~lW~~yi~fe~~~~~~~~a~~iy~ral~~p~~-~l~~~~~~~~~~~~ 191 (1071)
.+..+.+. ++++.|+++|++.++. |..+ ....|...+......|.++.+.++|++....... +. ..| ...+.
T Consensus 443 LL~a~~k~-g~~e~A~~lf~~M~~~-Gl~p-D~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~Pdv-vTy---naLI~ 515 (1060)
T PLN03218 443 LMSVCASS-QDIDGALRVLRLVQEA-GLKA-DCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANV-HTF---GALID 515 (1060)
T ss_pred HHHHHHhC-cCHHHHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCH-HHH---HHHHH
Confidence 77777776 8888888888887653 3322 3567888888887888888888888877642111 11 111 11111
Q ss_pred hHHHhhhhhchhhHHHHHHHhhcCCccCCcccchhhHHHhhhcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001481 192 AWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFE 271 (1071)
Q Consensus 192 ~~~e~l~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~i~~~~d~~~~~~~a~~l~~~~~~~~~~y~~a~~~~~~~~~fE 271 (1071)
. |.+.....+++..|+
T Consensus 516 g----------------------------------------------------------------y~k~G~~eeAl~lf~ 531 (1060)
T PLN03218 516 G----------------------------------------------------------------CARAGQVAKAFGAYG 531 (1060)
T ss_pred H----------------------------------------------------------------HHHCcCHHHHHHHHH
Confidence 0 111111111222222
Q ss_pred HHhcccCcCCCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHhhcC---CCCCHHHHHHHHHHHHhhCCHHHHHHHHHH
Q 001481 272 NLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIP---CADYPEFWMRYVDFMESKGGREIASYALDR 348 (1071)
Q Consensus 272 ~ai~~~~~~~~~~~p~~~~~W~~y~~~~~~~g~~~~a~~~yerAL~~---~p~~~~lW~~ya~~l~~~g~~e~A~~il~r 348 (1071)
..... .+.| +...|..++..+.+.|++++|..+|++.... ..-+...|..++..+.+.|++++|+.+|++
T Consensus 532 ~M~~~------Gv~P-D~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~ 604 (1060)
T PLN03218 532 IMRSK------NVKP-DRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQM 604 (1060)
T ss_pred HHHHc------CCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 22211 0122 2456777788777888888888888887642 122356777777778888888888888888
Q ss_pred HHHHhhccchHHHHHHHHHHHHhCCHHHHHHHHHHHhhc-cChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhc
Q 001481 349 ATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYID-SDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQR 427 (1071)
Q Consensus 349 Al~~~~~~~p~i~~~~a~~e~~~g~~~~A~~~~~~al~~-~~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~ 427 (1071)
..+.-.+.++..|......+.+.|++++|..+|.+..+. +.|+ ...|..++..+.+.|++++|..+|+++++.
T Consensus 605 M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~k~----- 678 (1060)
T PLN03218 605 IHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD-EVFFSALVDVAGHAGDLDKAFEILQDARKQ----- 678 (1060)
T ss_pred HHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-----
Confidence 776533334466777777777888888888888877642 2343 456777777778888888888888887764
Q ss_pred cCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhh-CCChHHHHHHHHHHHHHcCCCCchhhHHHHHHHhhccCCcccc
Q 001481 428 KFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKH-VPNCKLLLEELIKFTMVHGGRSHISIVDAVISNALYSRPDVLK 506 (1071)
Q Consensus 428 ~~p~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~~-~P~~~~lw~~~~~~e~~~g~~~~a~~~r~l~e~Al~~~~d~~~ 506 (1071)
....+...|..+...+. ..|++++|+++|++..+. ...+...|..++..+.+.|+.+++. .+|++....
T Consensus 679 G~~pd~~tynsLI~ay~-k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAl---elf~eM~~~------ 748 (1060)
T PLN03218 679 GIKLGTVSYSSLMGACS-NAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKAL---EVLSEMKRL------ 748 (1060)
T ss_pred CCCCCHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHH---HHHHHHHHc------
Confidence 13345667777777776 788888888888877653 2235566888888887778777764 667665532
Q ss_pred cCChhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 001481 507 VFSLEDVEDISSLYLQQFLDLCGTIHDIRNAWNQHIKLF 545 (1071)
Q Consensus 507 ~l~~~~~~~lw~~~l~~~e~~~G~~e~a~~~~~ra~~~~ 545 (1071)
++.++ ...|...+ ......|+++.|..++.++.+..
T Consensus 749 Gi~Pd--~~Ty~sLL-~a~~k~G~le~A~~l~~~M~k~G 784 (1060)
T PLN03218 749 GLCPN--TITYSILL-VASERKDDADVGLDLLSQAKEDG 784 (1060)
T ss_pred CCCCC--HHHHHHHH-HHHHHCCCHHHHHHHHHHHHHcC
Confidence 22222 23455666 66677888888888888877754
No 37
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.70 E-value=8.1e-16 Score=185.99 Aligned_cols=217 Identities=16% Similarity=0.228 Sum_probs=196.0
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhccc----hHHHHHHHHHHHHhCCHHHHHHHHH
Q 001481 307 WVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRL----PVIHLFNARYKEQIGDTSAARAAFP 382 (1071)
Q Consensus 307 ~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~----p~i~~~~a~~e~~~g~~~~A~~~~~ 382 (1071)
+..+-|+|.+...|+..-+|+.|..|....+++++||++.+||+..++.+. -++|.+|..+|...|.-+...++|+
T Consensus 1442 esaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFe 1521 (1710)
T KOG1070|consen 1442 ESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFE 1521 (1710)
T ss_pred cCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHH
Confidence 345678999999999999999999999999999999999999998754332 2699999999999998888999999
Q ss_pred HHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Q 001481 383 ESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIK 462 (1071)
Q Consensus 383 ~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~ 462 (1071)
||...++| ..++..+..++.+.+.+++|.++|+..++. +.....+|+.||.++. +.++-++|+.++.+||+
T Consensus 1522 RAcqycd~--~~V~~~L~~iy~k~ek~~~A~ell~~m~KK------F~q~~~vW~~y~~fLl-~~ne~~aa~~lL~rAL~ 1592 (1710)
T KOG1070|consen 1522 RACQYCDA--YTVHLKLLGIYEKSEKNDEADELLRLMLKK------FGQTRKVWIMYADFLL-RQNEAEAARELLKRALK 1592 (1710)
T ss_pred HHHHhcch--HHHHHHHHHHHHHhhcchhHHHHHHHHHHH------hcchhhHHHHHHHHHh-cccHHHHHHHHHHHHHh
Confidence 99966554 667999999999999999999999999998 5567899999999998 89999999999999999
Q ss_pred hCCC--hHHHHHHHHHHHHHcCCCCchhhHHHHHHHhhccCCcccccCChhhHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 001481 463 HVPN--CKLLLEELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQQFLDLCGTIHDIRNAWNQ 540 (1071)
Q Consensus 463 ~~P~--~~~lw~~~~~~e~~~g~~~~a~~~r~l~e~Al~~~~d~~~~l~~~~~~~lw~~~l~~~e~~~G~~e~a~~~~~r 540 (1071)
..|. ...+...++.+|.++|+.++. |++|+-.+...| .+.++|..|+ +.|..+|+.+.++++|+|
T Consensus 1593 ~lPk~eHv~~IskfAqLEFk~GDaeRG---RtlfEgll~ayP---------KRtDlW~VYi-d~eik~~~~~~vR~lfeR 1659 (1710)
T KOG1070|consen 1593 SLPKQEHVEFISKFAQLEFKYGDAERG---RTLFEGLLSAYP---------KRTDLWSVYI-DMEIKHGDIKYVRDLFER 1659 (1710)
T ss_pred hcchhhhHHHHHHHHHHHhhcCCchhh---HHHHHHHHhhCc---------cchhHHHHHH-HHHHccCCHHHHHHHHHH
Confidence 9998 789999999999999999887 599999998666 4679999999 999999999999999999
Q ss_pred HHHhC
Q 001481 541 HIKLF 545 (1071)
Q Consensus 541 a~~~~ 545 (1071)
++.+-
T Consensus 1660 vi~l~ 1664 (1710)
T KOG1070|consen 1660 VIELK 1664 (1710)
T ss_pred HHhcC
Confidence 99875
No 38
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.70 E-value=8.5e-17 Score=179.34 Aligned_cols=134 Identities=18% Similarity=0.082 Sum_probs=102.9
Q ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhccchHHHHHHHH
Q 001481 287 IQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNAR 366 (1071)
Q Consensus 287 ~~~~~W~~y~~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~ 366 (1071)
.+..+|..++.++.+.|+.++|+.+|++||...|++.+++..++.++...|+.++++.++++.... .+.+|.+|..+|.
T Consensus 144 ~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~-~~~~~~~~~~la~ 222 (280)
T PF13429_consen 144 DSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKA-APDDPDLWDALAA 222 (280)
T ss_dssp T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH-CcCHHHHHHHHHH
Confidence 455689999999999999999999999999999999999999999999999999999999888776 4778889999999
Q ss_pred HHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001481 367 YKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALET 422 (1071)
Q Consensus 367 ~e~~~g~~~~A~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~ 422 (1071)
.+...|++++|+.+|++++ ...|+++.++..+++++...|..++|..++++++..
T Consensus 223 ~~~~lg~~~~Al~~~~~~~-~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 223 AYLQLGRYEEALEYLEKAL-KLNPDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp HHHHHT-HHHHHHHHHHHH-HHSTT-HHHHHHHHHHHT------------------
T ss_pred Hhccccccccccccccccc-cccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999 678999999999999999999999999999999876
No 39
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.69 E-value=1.2e-12 Score=166.99 Aligned_cols=387 Identities=12% Similarity=0.057 Sum_probs=220.8
Q ss_pred HHHHHHHHhCC--CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 001481 24 QGLEEFIAEGS--LDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQ 101 (1071)
Q Consensus 24 ~~le~al~~nP--~d~~~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P~s~~lW~~~a~~e~~~~~~e~A~~lferAL~ 101 (1071)
+.|++..+.+. .+.-.+..++..|.+. +.+++|..+|+.+.. | +...|..++..+.+.++++.|+.+|+++.+
T Consensus 391 ~Lfd~M~~~gvv~~~~v~~~~li~~~~~~--g~~~eAl~lf~~M~~--p-d~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~ 465 (1060)
T PLN03218 391 DLLEDMEKRGLLDMDKIYHAKFFKACKKQ--RAVKEAFRFAKLIRN--P-TLSTFNMLMSVCASSQDIDGALRVLRLVQE 465 (1060)
T ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHHHC--CCHHHHHHHHHHcCC--C-CHHHHHHHHHHHHhCcCHHHHHHHHHHHHH
Confidence 34555555543 3444455567777766 889999999988875 4 567899999999999999999999999988
Q ss_pred h-cCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhccCCccHH
Q 001481 102 S-ATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLH 180 (1071)
Q Consensus 102 ~-~P~s~~lW~~y~~~~~~~~~~~e~ar~l~erAL~~~~~~~~s~~lW~~yi~fe~~~~~~~~a~~iy~ral~~p~~~l~ 180 (1071)
. +..+...|..++..+.+. +++++|+++|++..+. |..+ ....|...+....+.|++++|..+|.+.......--.
T Consensus 466 ~Gl~pD~~tynsLI~~y~k~-G~vd~A~~vf~eM~~~-Gv~P-dvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~ 542 (1060)
T PLN03218 466 AGLKADCKLYTTLISTCAKS-GKVDAMFEVFHEMVNA-GVEA-NVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDR 542 (1060)
T ss_pred cCCCCCHHHHHHHHHHHHhC-cCHHHHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCH
Confidence 6 344788999999998888 9999999999998864 3322 4678999999999999999999999988642111001
Q ss_pred HHHHHHHHHHHhHHHhhhhhchhhHHHHHHHhhcCCccCCcccchhhHHHhhhcCcchhHHHHHHHHHHHHHHHHHHHHH
Q 001481 181 HYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEA 260 (1071)
Q Consensus 181 ~~~~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~i~~~~d~~~~~~~a~~l~~~~~~~~~~y~~a 260 (1071)
..| ..++..+-+.- ..+.+.+ ++..+.....+ +. +.. ..|..+. ..|.+.
T Consensus 543 vTY---nsLI~a~~k~G--~~deA~~-lf~eM~~~~~g---------------i~--PD~------vTynaLI-~ay~k~ 592 (1060)
T PLN03218 543 VVF---NALISACGQSG--AVDRAFD-VLAEMKAETHP---------------ID--PDH------ITVGALM-KACANA 592 (1060)
T ss_pred HHH---HHHHHHHHHCC--CHHHHHH-HHHHHHHhcCC---------------CC--CcH------HHHHHHH-HHHHHC
Confidence 112 12111110000 0000000 11111000000 00 000 0000000 112223
Q ss_pred HHHHHHHHHHHHHhcccCcCCCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHhhcC--CCCCHHHHHHHHHHHHhhCC
Q 001481 261 SQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIP--CADYPEFWMRYVDFMESKGG 338 (1071)
Q Consensus 261 ~~~~~~~~~fE~ai~~~~~~~~~~~p~~~~~W~~y~~~~~~~g~~~~a~~~yerAL~~--~p~~~~lW~~ya~~l~~~g~ 338 (1071)
....+++..|+...+.. . +.+...|..++..+.+.|++++|..+|++.... .| +...|..++..+.+.|+
T Consensus 593 G~ldeA~elf~~M~e~g------i-~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~P-D~~TynsLI~a~~k~G~ 664 (1060)
T PLN03218 593 GQVDRAKEVYQMIHEYN------I-KGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKP-DEVFFSALVDVAGHAGD 664 (1060)
T ss_pred CCHHHHHHHHHHHHHcC------C-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhCCC
Confidence 33333344444433220 0 112345666666666666666666666666643 23 24556666666666666
Q ss_pred HHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhCCHHHHHHHHHHHhhc-cChhhHHHHHHHHHHHHHcCCHHHHHHHHH
Q 001481 339 REIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYID-SDSRFIEKVTFKANMERRLGNFVAACDTYK 417 (1071)
Q Consensus 339 ~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~~A~~~~~~al~~-~~p~~~~~w~~~a~le~~~g~~~~A~~~y~ 417 (1071)
+++|..+|+++.+.-.+-+...|..+...+.+.|++++|+.+|+...+. +.| +...|..++..+.+.|++++|.++|+
T Consensus 665 ~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P-dvvtyN~LI~gy~k~G~~eeAlelf~ 743 (1060)
T PLN03218 665 LDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP-TVSTMNALITALCEGNQLPKALEVLS 743 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 6666666666655322222345555556666666666666666665421 223 34456666666666666666666666
Q ss_pred HHHHHHhhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhh
Q 001481 418 EALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKH 463 (1071)
Q Consensus 418 ~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~~ 463 (1071)
++... ....+...|..+...+. ..|++++|+++|..+++.
T Consensus 744 eM~~~-----Gi~Pd~~Ty~sLL~a~~-k~G~le~A~~l~~~M~k~ 783 (1060)
T PLN03218 744 EMKRL-----GLCPNTITYSILLVASE-RKDDADVGLDLLSQAKED 783 (1060)
T ss_pred HHHHc-----CCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHc
Confidence 65443 01223334444444444 566666666666666654
No 40
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=2e-13 Score=149.98 Aligned_cols=184 Identities=13% Similarity=-0.001 Sum_probs=150.6
Q ss_pred HHHHHHhCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhCCHH
Q 001481 296 LSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTS 375 (1071)
Q Consensus 296 ~~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~ 375 (1071)
+.++.-.++.+.|+..|+|||+.+|....+|.-.|.-+....+...|+..|+||+++ .|.+-..|+.++..++..+-..
T Consensus 337 aNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi-~p~DyRAWYGLGQaYeim~Mh~ 415 (559)
T KOG1155|consen 337 ANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI-NPRDYRAWYGLGQAYEIMKMHF 415 (559)
T ss_pred hhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc-CchhHHHHhhhhHHHHHhcchH
Confidence 444545567788999999999999999999999998888888889999999999987 4444468888888888888888
Q ss_pred HHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhhcCCHHHHHH
Q 001481 376 AARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARD 455 (1071)
Q Consensus 376 ~A~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~g~~e~Ar~ 455 (1071)
=|+-.|++|+ .+.|+..++|..+++++.+.+++++|+++|++|+.. ......+++.+|.++. +.++.++|..
T Consensus 416 YaLyYfqkA~-~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~------~dte~~~l~~LakLye-~l~d~~eAa~ 487 (559)
T KOG1155|consen 416 YALYYFQKAL-ELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILL------GDTEGSALVRLAKLYE-ELKDLNEAAQ 487 (559)
T ss_pred HHHHHHHHHH-hcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc------cccchHHHHHHHHHHH-HHHhHHHHHH
Confidence 8999999998 788999999999999999999999999999999887 4455678888999987 8999999999
Q ss_pred HHHHHHhh-------CCChHHHHHHHHHHHHHcCCCCchh
Q 001481 456 ILIDGIKH-------VPNCKLLLEELIKFTMVHGGRSHIS 488 (1071)
Q Consensus 456 i~e~al~~-------~P~~~~lw~~~~~~e~~~g~~~~a~ 488 (1071)
+|++-++. .++-.....-++.++.+.++++++.
T Consensus 488 ~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As 527 (559)
T KOG1155|consen 488 YYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEAS 527 (559)
T ss_pred HHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHH
Confidence 99998883 3333333344777788888887763
No 41
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.69 E-value=7.6e-13 Score=164.49 Aligned_cols=438 Identities=12% Similarity=0.033 Sum_probs=282.3
Q ss_pred chHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 001481 22 GKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQ 101 (1071)
Q Consensus 22 ~~~~le~al~~nP~d~~~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P~s~~lW~~~a~~e~~~~~~e~A~~lferAL~ 101 (1071)
..+.|+++++.+|.+......++.++-.. |+.++|+..+++++...|..+..-+.++......+++++|+++|+++++
T Consensus 53 Al~~L~qaL~~~P~~~~av~dll~l~~~~--G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~ 130 (822)
T PRK14574 53 VLDYLQEESKAGPLQSGQVDDWLQIAGWA--GRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLK 130 (822)
T ss_pred HHHHHHHHHhhCccchhhHHHHHHHHHHc--CCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34589999999999853333666655555 8899999999999944455555555557788888999999999999999
Q ss_pred hcCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhccCCccHHH
Q 001481 102 SATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHH 181 (1071)
Q Consensus 102 ~~P~s~~lW~~y~~~~~~~~~~~e~ar~l~erAL~~~~~~~~s~~lW~~yi~fe~~~~~~~~a~~iy~ral~~p~~~l~~ 181 (1071)
..|.+.+++...+..+... ++.++|...+++++...|... .+...+.+....++..++...|++++.....+...
T Consensus 131 ~dP~n~~~l~gLa~~y~~~-~q~~eAl~~l~~l~~~dp~~~----~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~ 205 (822)
T PRK14574 131 KDPTNPDLISGMIMTQADA-GRGGVVLKQATELAERDPTVQ----NYMTLSYLNRATDRNYDALQASSEAVRLAPTSEEV 205 (822)
T ss_pred hCCCCHHHHHHHHHHHhhc-CCHHHHHHHHHHhcccCcchH----HHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHH
Confidence 9999999998777777776 888899999998888776532 22333333333455555888999998754443333
Q ss_pred HHHHHHHHHHhHHHhhhhhchhhHHHHHHHhhcCCccCCcccchhhHHHhhhcCcc--hhHHHHHHHHHHHHHHHHHHHH
Q 001481 182 YYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPS--VDLVRSKAIQKYRFIGEQIYKE 259 (1071)
Q Consensus 182 ~~~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~i~~~~d~~--~~~~~a~~l~~~~~~~~~~y~~ 259 (1071)
++..+ ..+....- ...-.+++.. .+..++..+.. |++.. ...++.-.... . ....-|..
T Consensus 206 ~~~~~-~~l~~~~~---------~~~a~~l~~~--~p~~f~~~~~~-----~l~~~~~a~~vr~a~~~~-~-~~~~r~~~ 266 (822)
T PRK14574 206 LKNHL-EILQRNRI---------VEPALRLAKE--NPNLVSAEHYR-----QLERDAAAEQVRMAVLPT-R-SETERFDI 266 (822)
T ss_pred HHHHH-HHHHHcCC---------cHHHHHHHHh--CccccCHHHHH-----HHHHHHHHHHHhhccccc-c-cchhhHHH
Confidence 22222 22221100 0000011100 00111111110 00000 00000000000 0 00001111
Q ss_pred HHHHHHHHHHHHHHhcccCcCCCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHhhcC---CCCCHHHHHHHHHHHHhh
Q 001481 260 ASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIP---CADYPEFWMRYVDFMESK 336 (1071)
Q Consensus 260 a~~~~~~~~~fE~ai~~~~~~~~~~~p~~~~~W~~y~~~~~~~g~~~~a~~~yerAL~~---~p~~~~lW~~ya~~l~~~ 336 (1071)
+ ...+..++..+.+.- ...+..+....+-..++-.+...|++++|+..|+..-.. .|.+ +-..+|..|...
T Consensus 267 ~---d~ala~~~~l~~~~~-~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y--~~~a~adayl~~ 340 (822)
T PRK14574 267 A---DKALADYQNLLTRWG-KDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDY--ARRWAASAYIDR 340 (822)
T ss_pred H---HHHHHHHHHHHhhcc-CCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHH--HHHHHHHHHHhc
Confidence 1 223333443332100 001111222344556666777889999999999998754 3555 444457778888
Q ss_pred CCHHHHHHHHHHHHHHhhc---cchH----HHHHHHHHHHHhCCHHHHHHHHHHHhhcc--------------ChhhHHH
Q 001481 337 GGREIASYALDRATQIFLK---RLPV----IHLFNARYKEQIGDTSAARAAFPESYIDS--------------DSRFIEK 395 (1071)
Q Consensus 337 g~~e~A~~il~rAl~~~~~---~~p~----i~~~~a~~e~~~g~~~~A~~~~~~al~~~--------------~p~~~~~ 395 (1071)
+..++|..+|..++....+ ..+. .-++|| +...+++++|..++++..+.. +|+..++
T Consensus 341 ~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA--~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~ 418 (822)
T PRK14574 341 RLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYS--LNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEG 418 (822)
T ss_pred CCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHH--HHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHH
Confidence 9999999999998763111 1111 223333 455899999999999987421 2344566
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCChHHHHHHHH
Q 001481 396 VTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLLLEELI 475 (1071)
Q Consensus 396 w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~~~P~~~~lw~~~~ 475 (1071)
....+..+...|++.+|.+.+++.+.. .|.+..+++.+|.++. ..|...+|+.+|+.++...|++..+-...+
T Consensus 419 ~~l~a~~~~~~gdl~~Ae~~le~l~~~------aP~n~~l~~~~A~v~~-~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~ 491 (822)
T PRK14574 419 QTLLVQSLVALNDLPTAQKKLEDLSST------APANQNLRIALASIYL-ARDLPRKAEQELKAVESLAPRSLILERAQA 491 (822)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHhhhCCccHHHHHHHH
Confidence 666777778889999999999999998 8999999999999998 999999999999999999999999888888
Q ss_pred HHHHHcCCCCchhhHHHHHHHhhccCCc
Q 001481 476 KFTMVHGGRSHISIVDAVISNALYSRPD 503 (1071)
Q Consensus 476 ~~e~~~g~~~~a~~~r~l~e~Al~~~~d 503 (1071)
......+++..++ .+.++.+...|+
T Consensus 492 ~~al~l~e~~~A~---~~~~~l~~~~Pe 516 (822)
T PRK14574 492 ETAMALQEWHQME---LLTDDVISRSPE 516 (822)
T ss_pred HHHHhhhhHHHHH---HHHHHHHhhCCC
Confidence 8888889888775 888888877775
No 42
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.69 E-value=1.5e-13 Score=172.77 Aligned_cols=437 Identities=13% Similarity=0.042 Sum_probs=313.7
Q ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-cCCCHHHHHH
Q 001481 36 DFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFP--LCYGYWRKYADHKARLCSIDKVVEVFERAVQS-ATYSVDVWFH 112 (1071)
Q Consensus 36 d~~~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P--~s~~lW~~~a~~e~~~~~~e~A~~lferAL~~-~P~s~~lW~~ 112 (1071)
+...|...+..+... +.+.+|..+|+.+....+ -+...|..++....+.++++.++.++..+++. +..++.+|..
T Consensus 86 ~~~~~~~~i~~l~~~--g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 86 SGVSLCSQIEKLVAC--GRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CceeHHHHHHHHHcC--CCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 344799999888777 899999999999987643 46678899999999999999999999988875 2336788889
Q ss_pred HHHHHHhhCCChhHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhccCCccHHHHHHHHHHHHHh
Q 001481 113 YCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAGA 192 (1071)
Q Consensus 113 y~~~~~~~~~~~e~ar~l~erAL~~~~~~~~s~~lW~~yi~fe~~~~~~~~a~~iy~ral~~p~~~l~~~~~~~~~~~~~ 192 (1071)
++..+.+. +++++|+++|++... + ....|...+.-....|.+++|..+|++.+......-...|.........
T Consensus 164 Li~~y~k~-g~~~~A~~lf~~m~~--~----~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~ 236 (697)
T PLN03081 164 VLLMHVKC-GMLIDARRLFDEMPE--R----NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAG 236 (697)
T ss_pred HHHHHhcC-CCHHHHHHHHhcCCC--C----CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhc
Confidence 99988888 999999999997643 1 3457888998888889999999999998753221111111111110000
Q ss_pred HHHhhhhhchhhHHHHHHHhh-cCCccCCcccchhhHHHhhhcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001481 193 WKEELECESDSAMEFQSELVL-EGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFE 271 (1071)
Q Consensus 193 ~~e~l~~~~~~~~~~~~~~~~-~~~l~~~~~~~e~~~~i~~~~d~~~~~~~a~~l~~~~~~~~~~y~~a~~~~~~~~~fE 271 (1071)
... + .. ...+...+. .+... +.... .. .-..|.+.....+++..|+
T Consensus 237 ~~~-~----~~-~~~l~~~~~~~g~~~----d~~~~----------------n~-------Li~~y~k~g~~~~A~~vf~ 283 (697)
T PLN03081 237 LGS-A----RA-GQQLHCCVLKTGVVG----DTFVS----------------CA-------LIDMYSKCGDIEDARCVFD 283 (697)
T ss_pred CCc-H----HH-HHHHHHHHHHhCCCc----cceeH----------------HH-------HHHHHHHCCCHHHHHHHHH
Confidence 000 0 00 001111111 11100 00000 00 0112344444444555555
Q ss_pred HHhcccCcCCCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHhhcC-CCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 001481 272 NLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIP-CADYPEFWMRYVDFMESKGGREIASYALDRAT 350 (1071)
Q Consensus 272 ~ai~~~~~~~~~~~p~~~~~W~~y~~~~~~~g~~~~a~~~yerAL~~-~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl 350 (1071)
... +.+...|..++..+.+.|+.++|..+|++.... ..-+...|..++..+.+.|++++|..+++.++
T Consensus 284 ~m~-----------~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~ 352 (697)
T PLN03081 284 GMP-----------EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLI 352 (697)
T ss_pred hCC-----------CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence 432 224568999999999999999999999998753 22345678888888999999999999999998
Q ss_pred HHhhccchHHHHHHHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCC
Q 001481 351 QIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFH 430 (1071)
Q Consensus 351 ~~~~~~~p~i~~~~a~~e~~~g~~~~A~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p 430 (1071)
+.-.+.+..++..+...+.+.|++++|+.+|++.. + + +...|...+..+.+.|+.++|.++|++.++. ...
T Consensus 353 ~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-~--~-d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~-----g~~ 423 (697)
T PLN03081 353 RTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP-R--K-NLISWNALIAGYGNHGRGTKAVEMFERMIAE-----GVA 423 (697)
T ss_pred HhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC-C--C-CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCC
Confidence 86333344577788888999999999999999876 2 3 4567999999999999999999999998875 122
Q ss_pred CcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCC--ChHHHHHHHHHHHHHcCCCCchhhHHHHHHHhhccCCcccccC
Q 001481 431 TLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVP--NCKLLLEELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVF 508 (1071)
Q Consensus 431 ~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~~~P--~~~~lw~~~~~~e~~~g~~~~a~~~r~l~e~Al~~~~d~~~~l 508 (1071)
-+...|..+...+. ..|.+++|+++|+...+..+ .+...|..+++.+.+.|..++|. .+|+++- +
T Consensus 424 Pd~~T~~~ll~a~~-~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~---~~~~~~~---------~ 490 (697)
T PLN03081 424 PNHVTFLAVLSACR-YSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAY---AMIRRAP---------F 490 (697)
T ss_pred CCHHHHHHHHHHHh-cCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHH---HHHHHCC---------C
Confidence 34556766666666 89999999999999987644 34567888999999999888774 7777642 1
Q ss_pred ChhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcc
Q 001481 509 SLEDVEDISSLYLQQFLDLCGTIHDIRNAWNQHIKLFPHTVR 550 (1071)
Q Consensus 509 ~~~~~~~lw~~~l~~~e~~~G~~e~a~~~~~ra~~~~p~~~~ 550 (1071)
.+ ...+|...+ .....+|+++.+..++++.++..|+...
T Consensus 491 ~p--~~~~~~~Ll-~a~~~~g~~~~a~~~~~~l~~~~p~~~~ 529 (697)
T PLN03081 491 KP--TVNMWAALL-TACRIHKNLELGRLAAEKLYGMGPEKLN 529 (697)
T ss_pred CC--CHHHHHHHH-HHHHHcCCcHHHHHHHHHHhCCCCCCCc
Confidence 11 235799999 9999999999999999999998887543
No 43
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.66 E-value=3.6e-16 Score=174.26 Aligned_cols=165 Identities=19% Similarity=0.201 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHhhcC--CCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhccchHHHHHHHHH
Q 001481 290 KNWHDYLSFAEKQGDFDWVVKLYERCLIP--CADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARY 367 (1071)
Q Consensus 290 ~~W~~y~~~~~~~g~~~~a~~~yerAL~~--~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~ 367 (1071)
..|..++..+...++++++..+++++... .+.+..+|+.+|.++.+.|+.++|+.+|++|++. .|.++.++..++.+
T Consensus 111 ~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~-~P~~~~~~~~l~~~ 189 (280)
T PF13429_consen 111 RYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL-DPDDPDARNALAWL 189 (280)
T ss_dssp -------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--TT-HHHHHHHHHH
T ss_pred chhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHH
Confidence 35556666667778888888888886643 3678889999999999999999999999999987 77777888888888
Q ss_pred HHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhhc
Q 001481 368 KEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTT 447 (1071)
Q Consensus 368 e~~~g~~~~A~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~ 447 (1071)
+...|+.++++.++.... ...|.+..+|..++.++...|+.++|..+|+++++. .|.++.+...+|.++. ..
T Consensus 190 li~~~~~~~~~~~l~~~~-~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~------~p~d~~~~~~~a~~l~-~~ 261 (280)
T PF13429_consen 190 LIDMGDYDEAREALKRLL-KAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKL------NPDDPLWLLAYADALE-QA 261 (280)
T ss_dssp HCTTCHHHHHHHHHHHHH-HH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH------STT-HHHHHHHHHHHT---
T ss_pred HHHCCChHHHHHHHHHHH-HHCcCHHHHHHHHHHHhccccccccccccccccccc------cccccccccccccccc-cc
Confidence 888888888888888776 334666778888888888889999999999998887 7888888899999988 88
Q ss_pred CCHHHHHHHHHHHHhh
Q 001481 448 GSADNARDILIDGIKH 463 (1071)
Q Consensus 448 g~~e~Ar~i~e~al~~ 463 (1071)
|+.++|..++.++++.
T Consensus 262 g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 262 GRKDEALRLRRQALRL 277 (280)
T ss_dssp ----------------
T ss_pred cccccccccccccccc
Confidence 9999999988888753
No 44
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=99.65 E-value=4.6e-16 Score=172.20 Aligned_cols=138 Identities=20% Similarity=0.277 Sum_probs=121.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCChHHHHHH
Q 001481 394 EKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLLLEE 473 (1071)
Q Consensus 394 ~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~~~P~~~~lw~~ 473 (1071)
-+|+.|+++.+|.++++.||.+|++|++. ....+.+|+.+|.+|++..++.+.|++|||+|++.+|.+..+|..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~------~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~ 75 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKD------KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLE 75 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC------CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 37999999999999999999999999865 567899999999999845778888999999999999999999999
Q ss_pred HHHHHHHcCCCCchhhHHHHHHHhhccCCcccccCChhh-HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 001481 474 LIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLED-VEDISSLYLQQFLDLCGTIHDIRNAWNQHIKLFPHT 548 (1071)
Q Consensus 474 ~~~~e~~~g~~~~a~~~r~l~e~Al~~~~d~~~~l~~~~-~~~lw~~~l~~~e~~~G~~e~a~~~~~ra~~~~p~~ 548 (1071)
|++|+...|+.+++ |.+|++++. .++.+. ...||..|+ +||..+|+++.+.+++.|+.+.+|+.
T Consensus 76 Y~~~l~~~~d~~~a---R~lfer~i~-------~l~~~~~~~~iw~~~i-~fE~~~Gdl~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 76 YLDFLIKLNDINNA---RALFERAIS-------SLPKEKQSKKIWKKFI-EFESKYGDLESVRKVEKRAEELFPED 140 (280)
T ss_dssp HHHHHHHTT-HHHH---HHHHHHHCC-------TSSCHHHCHHHHHHHH-HHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHhCcHHHH---HHHHHHHHH-------hcCchhHHHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence 99999999987766 699999996 466666 789999999 99999999999999999999999983
No 45
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=1.2e-12 Score=143.98 Aligned_cols=260 Identities=12% Similarity=0.036 Sum_probs=195.2
Q ss_pred HHHHHHHHHHHHHhcccCcCCCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCHH
Q 001481 261 SQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGRE 340 (1071)
Q Consensus 261 ~~~~~~~~~fE~ai~~~~~~~~~~~p~~~~~W~~y~~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e 340 (1071)
++.+.+...||+..+...+.+ ++++++.+.+ --..+-.+...+-......+...++--.-.|.++.-.+..+
T Consensus 276 rDfD~a~s~Feei~knDPYRl-----~dmdlySN~L---Yv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHE 347 (559)
T KOG1155|consen 276 RDFDQAESVFEEIRKNDPYRL-----DDMDLYSNVL---YVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHE 347 (559)
T ss_pred hhHHHHHHHHHHHHhcCCCcc-----hhHHHHhHHH---HHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHH
Confidence 344555667777665322221 2333433322 22233334444444455555555566666788888888999
Q ss_pred HHHHHHHHHHHHhhccchHHHHHHHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001481 341 IASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEAL 420 (1071)
Q Consensus 341 ~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~~A~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al 420 (1071)
.|...|.||+++ +|+...+|-..+--+.+..+...|...|.+|+ +++|...++|+.++..+.-++-..-|.=.|++|+
T Consensus 348 KAv~YFkRALkL-Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAv-di~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~ 425 (559)
T KOG1155|consen 348 KAVMYFKRALKL-NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAV-DINPRDYRAWYGLGQAYEIMKMHFYALYYFQKAL 425 (559)
T ss_pred HHHHHHHHHHhc-CcchhHHHHHhhHHHHHhcccHHHHHHHHHHH-hcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHH
Confidence 999999999997 66666778777766778889999999999999 8999999999999999999999999999999999
Q ss_pred HHHhhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCCCchhhHHHHHHHhhcc
Q 001481 421 ETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLLLEELIKFTMVHGGRSHISIVDAVISNALYS 500 (1071)
Q Consensus 421 ~~~~~~~~~p~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~~~P~~~~lw~~~~~~e~~~g~~~~a~~~r~l~e~Al~~ 500 (1071)
.. .|.+..+|+.+|.++. ..++.++|.++|.+|+...-.+..++..++++..++++.+++. ..|++.+..
T Consensus 426 ~~------kPnDsRlw~aLG~CY~-kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa---~~yek~v~~ 495 (559)
T KOG1155|consen 426 EL------KPNDSRLWVALGECYE-KLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAA---QYYEKYVEV 495 (559)
T ss_pred hc------CCCchHHHHHHHHHHH-HhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHH---HHHHHHHHH
Confidence 99 8999999999999998 9999999999999999887778888888999999999888775 777777753
Q ss_pred CCcccccCChhhHH-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 001481 501 RPDVLKVFSLEDVE-DISSLYLQQFLDLCGTIHDIRNAWNQHIKL 544 (1071)
Q Consensus 501 ~~d~~~~l~~~~~~-~lw~~~l~~~e~~~G~~e~a~~~~~ra~~~ 544 (1071)
. +-.+...++..+ .+| .. .++...++++.|.....+++..
T Consensus 496 ~-~~eg~~~~~t~ka~~f--LA-~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 496 S-ELEGEIDDETIKARLF--LA-EYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred H-HhhcccchHHHHHHHH--HH-HHHHhhcchHHHHHHHHHHhcC
Confidence 1 001223333322 334 55 7888999999988877666655
No 46
>PLN03077 Protein ECB2; Provisional
Probab=99.65 E-value=7.3e-13 Score=170.60 Aligned_cols=457 Identities=11% Similarity=0.044 Sum_probs=298.8
Q ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-CCCHHHHHHH
Q 001481 35 LDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSA-TYSVDVWFHY 113 (1071)
Q Consensus 35 ~d~~~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P~s~~lW~~~a~~e~~~~~~e~A~~lferAL~~~-P~s~~lW~~y 113 (1071)
.|...|..++..|-+. |+++.|+.+|+++.. .+.-.|..++..+.+.|++++|..+|++++..- ..+.-.+...
T Consensus 220 ~~~~~~n~Li~~y~k~--g~~~~A~~lf~~m~~---~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~l 294 (857)
T PLN03077 220 LDVDVVNALITMYVKC--GDVVSARLVFDRMPR---RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSV 294 (857)
T ss_pred cccchHhHHHHHHhcC--CCHHHHHHHHhcCCC---CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHH
Confidence 4777888899988887 999999999999864 244579999999999999999999999988752 2244445555
Q ss_pred HHHHHhhCCChhHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhccCCccHHHH-HHHHHHHHHh
Q 001481 114 CSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHY-YDSFKKLAGA 192 (1071)
Q Consensus 114 ~~~~~~~~~~~e~ar~l~erAL~~~~~~~~s~~lW~~yi~fe~~~~~~~~a~~iy~ral~~p~~~l~~~-~~~~~~~~~~ 192 (1071)
+.-+... ++.+.+++++..+++. |..+ ...+|...+....+.|.++.|+++|++... |..-.|.. ...|.+ .+.
T Consensus 295 l~a~~~~-g~~~~a~~l~~~~~~~-g~~~-d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-~d~~s~n~li~~~~~-~g~ 369 (857)
T PLN03077 295 ISACELL-GDERLGREMHGYVVKT-GFAV-DVSVCNSLIQMYLSLGSWGEAEKVFSRMET-KDAVSWTAMISGYEK-NGL 369 (857)
T ss_pred HHHHHhc-CChHHHHHHHHHHHHh-CCcc-chHHHHHHHHHHHhcCCHHHHHHHHhhCCC-CCeeeHHHHHHHHHh-CCC
Confidence 5555555 7888888888887764 4333 356788888888888888888888887643 22111111 111111 111
Q ss_pred HHHhhhhhchhhHHHHHHHhhcCCccCCcccchhhHHHhhhcCcchhHHHHHHHHHH------------HHHHHHHHHHH
Q 001481 193 WKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKY------------RFIGEQIYKEA 260 (1071)
Q Consensus 193 ~~e~l~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~i~~~~d~~~~~~~a~~l~~~------------~~~~~~~y~~a 260 (1071)
+++++. .+.+....+.. ++..-+..++..+.. .+.+..+..+... +...-..|.+.
T Consensus 370 ~~~A~~--------lf~~M~~~g~~---Pd~~t~~~ll~a~~~-~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~ 437 (857)
T PLN03077 370 PDKALE--------TYALMEQDNVS---PDEITIASVLSACAC-LGDLDVGVKLHELAERKGLISYVVVANALIEMYSKC 437 (857)
T ss_pred HHHHHH--------HHHHHHHhCCC---CCceeHHHHHHHHhc-cchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHc
Confidence 122211 00000001100 000000001100000 0000001111000 00011223344
Q ss_pred HHHHHHHHHHHHHhcccCcCCCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCHH
Q 001481 261 SQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGRE 340 (1071)
Q Consensus 261 ~~~~~~~~~fE~ai~~~~~~~~~~~p~~~~~W~~y~~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e 340 (1071)
....+++..|++..+ .+...|..++..+...|+.++|..+|++.+....-+...+..++..+.+.|.++
T Consensus 438 g~~~~A~~vf~~m~~-----------~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~ 506 (857)
T PLN03077 438 KCIDKALEVFHNIPE-----------KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALM 506 (857)
T ss_pred CCHHHHHHHHHhCCC-----------CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHH
Confidence 444444455553221 234478888888888888888888888887654445566677777777888888
Q ss_pred HHHHHHHHHHHHhhccchHHHHHHHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001481 341 IASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEAL 420 (1071)
Q Consensus 341 ~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~~A~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al 420 (1071)
.++.++..+++.-...+..+...+...+.+.|++++|+.+|... ..+...|...+..+.+.|..++|.++|++..
T Consensus 507 ~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~ 581 (857)
T PLN03077 507 CGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMV 581 (857)
T ss_pred HhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 88888888877533333345556677888999999999999875 2356789999999999999999999999987
Q ss_pred HHHhhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCC--ChHHHHHHHHHHHHHcCCCCchhhHHHHHHHhh
Q 001481 421 ETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVP--NCKLLLEELIKFTMVHGGRSHISIVDAVISNAL 498 (1071)
Q Consensus 421 ~~~~~~~~~p~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~~~P--~~~~lw~~~~~~e~~~g~~~~a~~~r~l~e~Al 498 (1071)
+. . ..| +...|..+...+. ..|.+++|+++|+...+.++ .+...|..+++++.+.|..++|. .++++.-
T Consensus 582 ~~-g---~~P-d~~T~~~ll~a~~-~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~---~~~~~m~ 652 (857)
T PLN03077 582 ES-G---VNP-DEVTFISLLCACS-RSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAY---NFINKMP 652 (857)
T ss_pred Hc-C---CCC-CcccHHHHHHHHh-hcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHH---HHHHHCC
Confidence 64 1 122 2334444444555 78999999999999986543 35578899999999999988875 7777641
Q ss_pred ccCCcccccCChhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcc
Q 001481 499 YSRPDVLKVFSLEDVEDISSLYLQQFLDLCGTIHDIRNAWNQHIKLFPHTVR 550 (1071)
Q Consensus 499 ~~~~d~~~~l~~~~~~~lw~~~l~~~e~~~G~~e~a~~~~~ra~~~~p~~~~ 550 (1071)
..| ...+|...+ .....+|+.+.+..+.++.+++.|++..
T Consensus 653 -~~p----------d~~~~~aLl-~ac~~~~~~e~~e~~a~~l~~l~p~~~~ 692 (857)
T PLN03077 653 -ITP----------DPAVWGALL-NACRIHRHVELGELAAQHIFELDPNSVG 692 (857)
T ss_pred -CCC----------CHHHHHHHH-HHHHHcCChHHHHHHHHHHHhhCCCCcc
Confidence 112 247899999 8889999999999999999999998765
No 47
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.63 E-value=3.6e-12 Score=158.54 Aligned_cols=406 Identities=8% Similarity=-0.062 Sum_probs=264.4
Q ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 001481 23 KQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQS 102 (1071)
Q Consensus 23 ~~~le~al~~nP~d~~~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P~s~~lW~~~a~~e~~~~~~e~A~~lferAL~~ 102 (1071)
...+++++...|.....-..++..+... +++++|..+|+++++.+|.+..++..++......++.++|+..+++++..
T Consensus 88 ~~~~eka~~p~n~~~~~llalA~ly~~~--gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~ 165 (822)
T PRK14574 88 IDVYERYQSSMNISSRGLASAARAYRNE--KRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER 165 (822)
T ss_pred HHHHHHhccCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc
Confidence 3467788833344444444446788877 89999999999999999999999999989899999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhccCCccHHHH
Q 001481 103 ATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHY 182 (1071)
Q Consensus 103 ~P~s~~lW~~y~~~~~~~~~~~e~ar~l~erAL~~~~~~~~s~~lW~~yi~fe~~~~~~~~a~~iy~ral~~p~~~l~~~ 182 (1071)
.|..... +..+.++... ++..+|..+|+++++..|. ...++..|.......+....+.++..+.-.. .......
T Consensus 166 dp~~~~~-l~layL~~~~-~~~~~AL~~~ekll~~~P~---n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~ 239 (822)
T PRK14574 166 DPTVQNY-MTLSYLNRAT-DRNYDALQASSEAVRLAPT---SEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYR 239 (822)
T ss_pred CcchHHH-HHHHHHHHhc-chHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHH
Confidence 9974443 4444444333 6666699999999998776 4568888888787777766666554443211 1111222
Q ss_pred HHHHHHHHHhHHHhhh-hhch-hhHHHHHHHhhcCCccCCcccchhhHHHhhhcCc---chhHHHHHHHHHHHHHHHHHH
Q 001481 183 YDSFKKLAGAWKEELE-CESD-SAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDP---SVDLVRSKAIQKYRFIGEQIY 257 (1071)
Q Consensus 183 ~~~~~~~~~~~~e~l~-~~~~-~~~~~~~~~~~~~~l~~~~~~~e~~~~i~~~~d~---~~~~~~a~~l~~~~~~~~~~y 257 (1071)
|.....+...+..+.. .+.. .....+-..+ .+...++..|-+. ...+.++..-.-+.....+.+
T Consensus 240 ~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~al-----------a~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~ 308 (822)
T PRK14574 240 QLERDAAAEQVRMAVLPTRSETERFDIADKAL-----------ADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQT 308 (822)
T ss_pred HHHHHHHHHHHhhcccccccchhhHHHHHHHH-----------HHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhH
Confidence 2222232222211100 0000 0000000000 0011111111110 011111110000000111112
Q ss_pred HHHHHHHHHHHHHHHHhcccCcCCCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHhhcCCC----C--CHHHHHHHHH
Q 001481 258 KEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCA----D--YPEFWMRYVD 331 (1071)
Q Consensus 258 ~~a~~~~~~~~~fE~ai~~~~~~~~~~~p~~~~~W~~y~~~~~~~g~~~~a~~~yerAL~~~p----~--~~~lW~~ya~ 331 (1071)
. +.+..|+..-. ....-|..+..| +++.+...+.+++|..+|++++...+ . .......+..
T Consensus 309 ~------~vi~~y~~l~~-----~~~~~P~y~~~a--~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~y 375 (822)
T PRK14574 309 A------DLIKEYEAMEA-----EGYKMPDYARRW--AASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYY 375 (822)
T ss_pred H------HHHHHHHHhhh-----cCCCCCHHHHHH--HHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHH
Confidence 2 22233332211 001124444444 57777889999999999999987542 2 2222344555
Q ss_pred HHHhhCCHHHHHHHHHHHHHHhhc------------cch---HHHHHHHHHHHHhCCHHHHHHHHHHHhhccChhhHHHH
Q 001481 332 FMESKGGREIASYALDRATQIFLK------------RLP---VIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKV 396 (1071)
Q Consensus 332 ~l~~~g~~e~A~~il~rAl~~~~~------------~~p---~i~~~~a~~e~~~g~~~~A~~~~~~al~~~~p~~~~~w 396 (1071)
.+...+++++|..++++.... .| -+| ......+..+...|++.+|.+++++.+ ...|.+..++
T Consensus 376 A~ld~e~~~~A~~~l~~~~~~-~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~-~~aP~n~~l~ 453 (822)
T PRK14574 376 SLNESEQLDKAYQFAVNYSEQ-TPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLS-STAPANQNLR 453 (822)
T ss_pred HHHhcccHHHHHHHHHHHHhc-CCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCCHHHH
Confidence 567789999999999999873 22 011 345556777788999999999999998 7799999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCChHH
Q 001481 397 TFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKL 469 (1071)
Q Consensus 397 ~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~~~P~~~~ 469 (1071)
+.++.+++..|.+.+|+..|+++..+ .|.+..+.+..|.... ..+++.+|.++..+.+..+|++..
T Consensus 454 ~~~A~v~~~Rg~p~~A~~~~k~a~~l------~P~~~~~~~~~~~~al-~l~e~~~A~~~~~~l~~~~Pe~~~ 519 (822)
T PRK14574 454 IALASIYLARDLPRKAEQELKAVESL------APRSLILERAQAETAM-ALQEWHQMELLTDDVISRSPEDIP 519 (822)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhh------CCccHHHHHHHHHHHH-hhhhHHHHHHHHHHHHhhCCCchh
Confidence 99999999999999999999888887 7888899999999987 999999999999999999999874
No 48
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.63 E-value=7.8e-14 Score=160.31 Aligned_cols=119 Identities=8% Similarity=0.047 Sum_probs=79.4
Q ss_pred CcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChhHHHHHHH
Q 001481 53 DDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFK 132 (1071)
Q Consensus 53 ~~~~~a~~vyeraL~~~P~s~~lW~~~a~~e~~~~~~e~A~~lferAL~~~P~s~~lW~~y~~~~~~~~~~~e~ar~l~e 132 (1071)
-...+|...|++.-..+++.......+++.+++..++++|+++|+++=+..|.-++--..|--.++...+++ +-..+-
T Consensus 333 y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v--~Ls~La 410 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEV--ALSYLA 410 (638)
T ss_pred HHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhH--HHHHHH
Confidence 355788888888777788777666777888888888999999999888888776543333322222220111 112222
Q ss_pred HHHHhcCCCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhccC
Q 001481 133 RALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFP 175 (1071)
Q Consensus 133 rAL~~~~~~~~s~~lW~~yi~fe~~~~~~~~a~~iy~ral~~p 175 (1071)
+ ..+..+..++.-|....++..-+++.+.|++.|+||+++.
T Consensus 411 q--~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld 451 (638)
T KOG1126|consen 411 Q--DLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD 451 (638)
T ss_pred H--HHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC
Confidence 2 2223444577888888888877778888888888888753
No 49
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=99.62 E-value=9.2e-13 Score=143.74 Aligned_cols=415 Identities=14% Similarity=0.161 Sum_probs=263.8
Q ss_pred CcchHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCH------HHHH
Q 001481 20 GFGKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSI------DKVV 93 (1071)
Q Consensus 20 ~~~~~~le~al~~nP~d~~~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P~s~~lW~~~a~~e~~~~~~------e~A~ 93 (1071)
+...+.+++...-+|.-..+|..++.---.. +++.....+|-|+|..- .+.++|..|++.-.+.++. -...
T Consensus 59 ~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~--~df~svE~lf~rCL~k~-l~ldLW~lYl~YIRr~n~~~tGq~r~~i~ 135 (660)
T COG5107 59 DAEREMYEQLSSPFPIMEHAWRLYMSGELAR--KDFRSVESLFGRCLKKS-LNLDLWMLYLEYIRRVNNLITGQKRFKIY 135 (660)
T ss_pred HHHHHHHHHhcCCCccccHHHHHHhcchhhh--hhHHHHHHHHHHHHhhh-ccHhHHHHHHHHHHhhCcccccchhhhhH
Confidence 3345688999999999999999998732233 68899999999999865 6799999999987765421 1222
Q ss_pred HHHHH---HHHhcCCCHHHHHHHHHHHHhhC--------CChhHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHccCHH
Q 001481 94 EVFER---AVQSATYSVDVWFHYCSLSMSTF--------EDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWS 162 (1071)
Q Consensus 94 ~lfer---AL~~~P~s~~lW~~y~~~~~~~~--------~~~e~ar~l~erAL~~~~~~~~s~~lW~~yi~fe~~~~~~~ 162 (1071)
+.|+- |.-..|.+..+|-.|+.|+..-. ..++++|..|.|||.. |.+. -..+|..|-.||.+....
T Consensus 136 ~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~t-P~~n-leklW~dy~~fE~e~N~~- 212 (660)
T COG5107 136 EAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQT-PMGN-LEKLWKDYENFELELNKI- 212 (660)
T ss_pred HHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcC-cccc-HHHHHHHHHHHHHHHHHH-
Confidence 23332 44456899999999999986532 2468899999999964 5543 469999999999875332
Q ss_pred HHHHHHHHHhccCCccHHHHHHHHHHHHHhHHHhhhhhchhhHHHHHHHhhcCCccCCcccchhhHHHhhhcCcchhHHH
Q 001481 163 SLAQIFVQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVR 242 (1071)
Q Consensus 163 ~a~~iy~ral~~p~~~l~~~~~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~i~~~~d~~~~~~~ 242 (1071)
.+|++ +.-...-+......|.+|.+-.+ .+.. .+......+..+.. ..+--|+.+-+|-.+.+-.
T Consensus 213 TarKf----vge~sp~ym~ar~~yqe~~nlt~-Gl~v-~~~~~~Rt~nK~~r-------~s~S~WlNwIkwE~en~l~-- 277 (660)
T COG5107 213 TARKF----VGETSPIYMSARQRYQEIQNLTR-GLSV-KNPINLRTANKAAR-------TSDSNWLNWIKWEMENGLK-- 277 (660)
T ss_pred HHHHH----hcccCHHHHHHHHHHHHHHHHhc-cccc-cCchhhhhhccccc-------cccchhhhHhhHhhcCCcc--
Confidence 23322 21111112222333444332211 0110 00000000000000 0000011111111000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCCCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHhhcCCCCC
Q 001481 243 SKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADY 322 (1071)
Q Consensus 243 a~~l~~~~~~~~~~y~~a~~~~~~~~~fE~ai~~~~~~~~~~~p~~~~~W~~y~~~~~~~g~~~~a~~~yerAL~~~p~~ 322 (1071)
+.++... -+.--.|+.++.. -+-..++|..|..++...++..+|..+.+|++..+|.
T Consensus 278 ---------L~~~~~~-----qRi~y~~~q~~~y--------~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps- 334 (660)
T COG5107 278 ---------LGGRPHE-----QRIHYIHNQILDY--------FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS- 334 (660)
T ss_pred ---------cCCCcHH-----HHHHHHHHHHHHH--------hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc-
Confidence 0000000 0011123333331 1223579999999999999999999999999988776
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhcc--------------c----h-----------HHHHHHHHHHHHhCC
Q 001481 323 PEFWMRYVDFMESKGGREIASYALDRATQIFLKR--------------L----P-----------VIHLFNARYKEQIGD 373 (1071)
Q Consensus 323 ~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~--------------~----p-----------~i~~~~a~~e~~~g~ 373 (1071)
+-+.|+.+++..++.++...+|++++..+.+. + + -+|+-+..+..+..-
T Consensus 335 --L~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~G 412 (660)
T COG5107 335 --LTMFLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRG 412 (660)
T ss_pred --hheeHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhh
Confidence 78888998988888888888888776532110 1 1 134444455566777
Q ss_pred HHHHHHHHHHHhhccChhhHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhhcCCHHH
Q 001481 374 TSAARAAFPESYIDSDSRFIEKVTFKANMERR-LGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADN 452 (1071)
Q Consensus 374 ~~~A~~~~~~al~~~~p~~~~~w~~~a~le~~-~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~g~~e~ 452 (1071)
++.||++|-++.++- --..++|+..|-+|.. .|+...|.++|+-++.. +++.+.+...|-.++. ..+|-+.
T Consensus 413 l~aaR~~F~k~rk~~-~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~------f~d~~~y~~kyl~fLi-~inde~n 484 (660)
T COG5107 413 LEAARKLFIKLRKEG-IVGHHVYIYCAFIEYYATGDRATAYNIFELGLLK------FPDSTLYKEKYLLFLI-RINDEEN 484 (660)
T ss_pred HHHHHHHHHHHhccC-CCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHh------CCCchHHHHHHHHHHH-HhCcHHH
Confidence 899999999997432 1233445555544443 58999999999999998 7777777677777777 8999999
Q ss_pred HHHHHHHHHhhCCCh--HHHHHHHHHHHHHcCCCCchh
Q 001481 453 ARDILIDGIKHVPNC--KLLLEELIKFTMVHGGRSHIS 488 (1071)
Q Consensus 453 Ar~i~e~al~~~P~~--~~lw~~~~~~e~~~g~~~~a~ 488 (1071)
||.+|+.++.+.-+. ..+|..+++.|.+.|+...+-
T Consensus 485 araLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~ 522 (660)
T COG5107 485 ARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVY 522 (660)
T ss_pred HHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHH
Confidence 999999999886665 789999999999999988764
No 50
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.62 E-value=1.7e-11 Score=145.10 Aligned_cols=384 Identities=13% Similarity=0.094 Sum_probs=240.1
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 001481 37 FDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSL 116 (1071)
Q Consensus 37 ~~~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P~s~~lW~~~a~~e~~~~~~e~A~~lferAL~~~P~s~~lW~~y~~~ 116 (1071)
+...+..++.+-.. |++++|.+++..+++.+|..+..|..++..+...|+.+++...+-.|-...|.+.++|..++++
T Consensus 139 l~~ll~eAN~lfar--g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladl 216 (895)
T KOG2076|consen 139 LRQLLGEANNLFAR--GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADL 216 (895)
T ss_pred HHHHHHHHHHHHHh--CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 45556666666656 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCChhHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhc-cCCccHHHHHHHHHHHHHhHHH
Q 001481 117 SMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLR-FPSKKLHHYYDSFKKLAGAWKE 195 (1071)
Q Consensus 117 ~~~~~~~~e~ar~l~erAL~~~~~~~~s~~lW~~yi~fe~~~~~~~~a~~iy~ral~-~p~~~l~~~~~~~~~~~~~~~e 195 (1071)
..+. ++++.|+-.|.|||...|.+. .+...+..+....|....+...|.+++. .|..++..+-..-...++.+..
T Consensus 217 s~~~-~~i~qA~~cy~rAI~~~p~n~---~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~ 292 (895)
T KOG2076|consen 217 SEQL-GNINQARYCYSRAIQANPSNW---ELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFIT 292 (895)
T ss_pred HHhc-ccHHHHHHHHHHHHhcCCcch---HHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHH
Confidence 9888 999999999999999998763 3334556677788999999999999986 4533222211111111111100
Q ss_pred hhhhhchhhHHHHHHHhhcCCccCCcccchhhHHHhhhcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Q 001481 196 ELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEK--------- 266 (1071)
Q Consensus 196 ~l~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~i~~~~d~~~~~~~a~~l~~~~~~~~~~y~~a~~~~~~--------- 266 (1071)
... + ..+...+...+..+.-.....+.+ ++..+.+....|+++......
T Consensus 293 ~~~-~-e~a~~~le~~~s~~~~~~~~ed~n--------------------i~ael~l~~~q~d~~~~~i~~~~~r~~e~d 350 (895)
T KOG2076|consen 293 HNE-R-ERAAKALEGALSKEKDEASLEDLN--------------------ILAELFLKNKQSDKALMKIVDDRNRESEKD 350 (895)
T ss_pred hhH-H-HHHHHHHHHHHhhccccccccHHH--------------------HHHHHHHHhHHHHHhhHHHHHHhccccCCC
Confidence 000 0 001111111111000000000100 111111122222222221111
Q ss_pred ---HHHHHHHhcc--cCcCCCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHhhc---CCCCCHHHHHHHHHHHHhhCC
Q 001481 267 ---INCFENLIRR--PYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLI---PCADYPEFWMRYVDFMESKGG 338 (1071)
Q Consensus 267 ---~~~fE~ai~~--~~~~~~~~~p~~~~~W~~y~~~~~~~g~~~~a~~~yerAL~---~~p~~~~lW~~ya~~l~~~g~ 338 (1071)
..+++..-.. .+..+....+..+.+. .....+......+.+..+....+. ...+..++++..+..+...|+
T Consensus 351 ~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~ 429 (895)
T KOG2076|consen 351 DSEWDTDERRREEPNALCEVGKELSYDLRVI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGK 429 (895)
T ss_pred hhhhhhhhhccccccccccCCCCCCccchhH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhccc
Confidence 1111111000 0111111112222331 111111122222222222222222 135678999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001481 339 REIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKE 418 (1071)
Q Consensus 339 ~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~~A~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~~y~~ 418 (1071)
+.+|...|..++....-.+..+|+..|+++...|.+++|...|.+++ .+.|++.++-+.++.++.+.|+.++|..+++.
T Consensus 430 ~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl-~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~ 508 (895)
T KOG2076|consen 430 YKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVL-ILAPDNLDARITLASLYQQLGNHEKALETLEQ 508 (895)
T ss_pred HHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHH-hcCCCchhhhhhHHHHHHhcCCHHHHHHHHhc
Confidence 99999999999875333445699999999999999999999999999 78999999999999999999999999888877
Q ss_pred HHHHHh----hhccCCCcHHHHHHHHHHHHhhcCCHHH
Q 001481 419 ALETAA----EQRKFHTLPLLYVQFSRLTYTTTGSADN 452 (1071)
Q Consensus 419 Al~~~~----~~~~~p~~~~l~~~~A~~~~~~~g~~e~ 452 (1071)
.+.- . +.........+....+.++. ..|+.++
T Consensus 509 ~~~~-D~~~~e~~a~~~e~ri~~~r~d~l~-~~gk~E~ 544 (895)
T KOG2076|consen 509 IINP-DGRNAEACAWEPERRILAHRCDILF-QVGKREE 544 (895)
T ss_pred ccCC-CccchhhccccHHHHHHHHHHHHHH-HhhhHHH
Confidence 4411 0 00111223345666777776 7777665
No 51
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.62 E-value=1.9e-12 Score=162.84 Aligned_cols=441 Identities=10% Similarity=0.001 Sum_probs=303.6
Q ss_pred HHHHHHHhC--CCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 001481 25 GLEEFIAEG--SLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAE-FPLCYGYWRKYADHKARLCSIDKVVEVFERAVQ 101 (1071)
Q Consensus 25 ~le~al~~n--P~d~~~W~~li~~~~~~~~~~~~~a~~vyeraL~~-~P~s~~lW~~~a~~e~~~~~~e~A~~lferAL~ 101 (1071)
.|+...... .-|...|..++..+-.. +.++.++.++..+.+. +.-+...|..++..+.+.|++++|+++|++...
T Consensus 109 ~f~~m~~~~~~~~~~~t~~~ll~a~~~~--~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~ 186 (697)
T PLN03081 109 LFEILEAGCPFTLPASTYDALVEACIAL--KSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE 186 (697)
T ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC
Confidence 444444433 34678888888888776 8899999999988764 223578899999999999999999999998864
Q ss_pred hcCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhccCCccHHH
Q 001481 102 SATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHH 181 (1071)
Q Consensus 102 ~~P~s~~lW~~y~~~~~~~~~~~e~ar~l~erAL~~~~~~~~s~~lW~~yi~fe~~~~~~~~a~~iy~ral~~p~~~l~~ 181 (1071)
.++..|...+.-+.+. +++++|.++|++.+.. |..+ ....|...+......+....++.++..+++.....-..
T Consensus 187 ---~~~~t~n~li~~~~~~-g~~~~A~~lf~~M~~~-g~~p-~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~ 260 (697)
T PLN03081 187 ---RNLASWGTIIGGLVDA-GNYREAFALFREMWED-GSDA-EPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTF 260 (697)
T ss_pred ---CCeeeHHHHHHHHHHC-cCHHHHHHHHHHHHHh-CCCC-ChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccce
Confidence 3677899999888888 9999999999998865 3333 23455666666666677778888777665422111011
Q ss_pred HHH----HHHHHHHhHHHhhhhhchhhHHHHHHHhhcCCccCCcccchhhHHHhhhcCcchhHHHHHHHHHHHHHHHHHH
Q 001481 182 YYD----SFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIY 257 (1071)
Q Consensus 182 ~~~----~~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~i~~~~d~~~~~~~a~~l~~~~~~~~~~y 257 (1071)
+|. .|.+ .+.++++. .++..+ .+. .......+ . ..|
T Consensus 261 ~~n~Li~~y~k-~g~~~~A~---------~vf~~m---------------------~~~--~~vt~n~l------i-~~y 300 (697)
T PLN03081 261 VSCALIDMYSK-CGDIEDAR---------CVFDGM---------------------PEK--TTVAWNSM------L-AGY 300 (697)
T ss_pred eHHHHHHHHHH-CCCHHHHH---------HHHHhC---------------------CCC--ChhHHHHH------H-HHH
Confidence 111 1111 01111110 011111 100 00000111 0 112
Q ss_pred HHHHHHHHHHHHHHHHhcccCcCCCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHhhcCC-CCCHHHHHHHHHHHHhh
Q 001481 258 KEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPC-ADYPEFWMRYVDFMESK 336 (1071)
Q Consensus 258 ~~a~~~~~~~~~fE~ai~~~~~~~~~~~p~~~~~W~~y~~~~~~~g~~~~a~~~yerAL~~~-p~~~~lW~~ya~~l~~~ 336 (1071)
.+.....+++..|++..+. ...|+ ...+..++..+.+.|+++.+..+++.+++.. +.+..++..++..|.+.
T Consensus 301 ~~~g~~~eA~~lf~~M~~~------g~~pd-~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~ 373 (697)
T PLN03081 301 ALHGYSEEALCLYYEMRDS------GVSID-QFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKW 373 (697)
T ss_pred HhCCCHHHHHHHHHHHHHc------CCCCC-HHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHC
Confidence 2223333344444443321 12232 3467788888889999999999999999753 56678899999999999
Q ss_pred CCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhCCHHHHHHHHHHHhhc-cChhhHHHHHHHHHHHHHcCCHHHHHHH
Q 001481 337 GGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYID-SDSRFIEKVTFKANMERRLGNFVAACDT 415 (1071)
Q Consensus 337 g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~~A~~~~~~al~~-~~p~~~~~w~~~a~le~~~g~~~~A~~~ 415 (1071)
|++++|+.+|++..+. +...|...+..+.+.|+.++|.++|++.++. +.|+ ...|...+....+.|.+++|..+
T Consensus 374 G~~~~A~~vf~~m~~~----d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~~~~a~~~ 448 (697)
T PLN03081 374 GRMEDARNVFDRMPRK----NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPN-HVTFLAVLSACRYSGLSEQGWEI 448 (697)
T ss_pred CCHHHHHHHHHhCCCC----CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHhcCCcHHHHHHH
Confidence 9999999999987532 4457888888899999999999999998743 3454 45688888888899999999999
Q ss_pred HHHHHHHHhhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCCCchhhHHHHHH
Q 001481 416 YKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLLLEELIKFTMVHGGRSHISIVDAVIS 495 (1071)
Q Consensus 416 y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~~~P~~~~lw~~~~~~e~~~g~~~~a~~~r~l~e 495 (1071)
|+...+..+ ...+...|..+..++. +.|++++|.++|++.- ...+..+|..++.....+|+.+.++ .+++
T Consensus 449 f~~m~~~~g----~~p~~~~y~~li~~l~-r~G~~~eA~~~~~~~~--~~p~~~~~~~Ll~a~~~~g~~~~a~---~~~~ 518 (697)
T PLN03081 449 FQSMSENHR----IKPRAMHYACMIELLG-REGLLDEAYAMIRRAP--FKPTVNMWAALLTACRIHKNLELGR---LAAE 518 (697)
T ss_pred HHHHHHhcC----CCCCccchHhHHHHHH-hcCCHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCCcHHHH---HHHH
Confidence 999886511 1223356777778887 9999999999998752 2335668999999999999988775 7888
Q ss_pred HhhccCCcccccCChhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 001481 496 NALYSRPDVLKVFSLEDVEDISSLYLQQFLDLCGTIHDIRNAWNQHIKLF 545 (1071)
Q Consensus 496 ~Al~~~~d~~~~l~~~~~~~lw~~~l~~~e~~~G~~e~a~~~~~ra~~~~ 545 (1071)
+.+...|+. ...+...+ ......|.+++|.++++++.+.-
T Consensus 519 ~l~~~~p~~---------~~~y~~L~-~~y~~~G~~~~A~~v~~~m~~~g 558 (697)
T PLN03081 519 KLYGMGPEK---------LNNYVVLL-NLYNSSGRQAEAAKVVETLKRKG 558 (697)
T ss_pred HHhCCCCCC---------CcchHHHH-HHHHhCCCHHHHHHHHHHHHHcC
Confidence 887655521 12355566 77779999999999998877653
No 52
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=99.62 E-value=9.5e-12 Score=138.54 Aligned_cols=439 Identities=13% Similarity=0.164 Sum_probs=251.3
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhc------C-----C-------CcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh
Q 001481 25 GLEEFIAEGSLDFDEWTSLLSEIENS------C-----P-------DDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARL 86 (1071)
Q Consensus 25 ~le~al~~nP~d~~~W~~li~~~~~~------~-----~-------~~~~~a~~vyeraL~~~P~s~~lW~~~a~~e~~~ 86 (1071)
.|+..|.+--..+.-++.||.+-... + - .-..++..+|++++..|+.++++|..|+.+..+.
T Consensus 39 ~fE~kL~rr~~~i~Dfi~YI~YE~nl~~lr~kR~Kk~~~k~S~sd~si~~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~ 118 (568)
T KOG2396|consen 39 DFELKLQRRTLSIEDFINYIQYEINLEELRAKRRKKKRVKYSFSDDSIPNRIVFLYRRATNRFNGDVKLWLSYIAFCKKK 118 (568)
T ss_pred HHHHHHccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence 56667777777778888887741110 0 0 1114566899999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHccCHHHHHH
Q 001481 87 CSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQ 166 (1071)
Q Consensus 87 ~~~e~A~~lferAL~~~P~s~~lW~~y~~~~~~~~~~~e~ar~l~erAL~~~~~~~~s~~lW~~yi~fe~~~~~~~~a~~ 166 (1071)
+.+.++..+|..+|..+|.+++||+.-+.++.+...+++.||.+|.++|+..|. +..||..|.++|... +.+
T Consensus 119 ~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npd---sp~Lw~eyfrmEL~~-----~~K 190 (568)
T KOG2396|consen 119 KTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPD---SPKLWKEYFRMELMY-----AEK 190 (568)
T ss_pred cchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCC---ChHHHHHHHHHHHHH-----HHH
Confidence 999999999999999999999999999999988745699999999999998765 789999999999753 334
Q ss_pred HHHHHh--ccCCccHHHHHHHHHHHHHhHHHhhhhhchhhHHHHHHHhhcCCccCCcccchhhHHHhhhcCcchhHHHHH
Q 001481 167 IFVQTL--RFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSK 244 (1071)
Q Consensus 167 iy~ral--~~p~~~l~~~~~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~i~~~~d~~~~~~~a~ 244 (1071)
+..|.. .....+.. ...+.+...+.....+ .+ ..++. ...... +
T Consensus 191 l~~rr~~~g~~~~~~~---~eie~ge~~~~~~~~s-----~~-----~~~~~------~k~~e~-------~-------- 236 (568)
T KOG2396|consen 191 LRNRREELGLDSSDKD---EEIERGELAWINYANS-----VD-----IIKGA------VKSVEL-------S-------- 236 (568)
T ss_pred HHHHHHHhccccchhH---HHHHHHHHHHHhhccc-----hh-----hhhcc------hhhcch-------H--------
Confidence 433332 21111110 0111111000000000 00 00000 000000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCCCCCChhHHHHHHHHHHHH----HH---------------hCCH
Q 001481 245 AIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFA----EK---------------QGDF 305 (1071)
Q Consensus 245 ~l~~~~~~~~~~y~~a~~~~~~~~~fE~ai~~~~~~~~~~~p~~~~~W~~y~~~~----~~---------------~g~~ 305 (1071)
....++.++++-+.... .+ ....|.++..|-..+.-+ .. ..+.
T Consensus 237 --------~~~~~d~~kel~k~i~d---~~-------~~~~~~np~~~~~laqr~l~i~~~tdl~~~~~~~~~~~~~~k~ 298 (568)
T KOG2396|consen 237 --------VAEKFDFLKELQKNIID---DL-------QSKAPDNPLLWDDLAQRELEILSQTDLQHTDNQAKAVEVGSKE 298 (568)
T ss_pred --------HHHHHHHHHHHHHHHHH---HH-------hccCCCCCccHHHHHHHHHHHHHHhhccchhhhhhchhcchhH
Confidence 00001111111111100 00 001233333443332211 10 0134
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCC------HHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhCCHHHHHH
Q 001481 306 DWVVKLYERCLIPCADYPEFWMRYVDFMESKGG------REIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARA 379 (1071)
Q Consensus 306 ~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~------~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~~A~~ 379 (1071)
++...+|+.++...+ ....|-.|+.++..... +.....+++++.+. ....+...-.|+..........+|+.
T Consensus 299 s~~~~v~ee~v~~l~-t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~-~~l~~~~~~~ys~~~l~~~t~~~~r~ 376 (568)
T KOG2396|consen 299 SRCCAVYEEAVKTLP-TESMWECYITFCLERFTFLRGKRILHTMCVFRKAHEL-KLLSECLYKQYSVLLLCLNTLNEARE 376 (568)
T ss_pred HHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHh-cccccchHHHHHHHHHHHhccchHhH
Confidence 577899999998755 45788888887765422 33445566666553 11223333344443333333344555
Q ss_pred HHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhhcCC-HHHHHH-HH
Q 001481 380 AFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGS-ADNARD-IL 457 (1071)
Q Consensus 380 ~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~g~-~e~Ar~-i~ 457 (1071)
+-.+...+...++..+|+.+...+.+... .+.-+|+++...+... + ....+..|+..- .++ ...++. .+
T Consensus 377 ~a~~l~~e~f~~s~k~~~~kl~~~~~s~s--D~q~~f~~l~n~~r~~---~-~s~~~~~w~s~~---~~dsl~~~~~~~I 447 (568)
T KOG2396|consen 377 VAVKLTTELFRDSGKMWQLKLQVLIESKS--DFQMLFEELFNHLRKQ---V-CSELLISWASAS---EGDSLQEDTLDLI 447 (568)
T ss_pred HHHHhhHHHhcchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHH---h-cchhHHHHHHHh---hccchhHHHHHHH
Confidence 54444323334678889988887764322 2333333322222111 1 123333333322 222 333322 23
Q ss_pred HHHHhh--CCChHHHHHHHHHHHHHcCCCCchhhHHHHHHHhhccCCcccccCChhhHHHHHHHHHHHHHH---hcCCHH
Q 001481 458 IDGIKH--VPNCKLLLEELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQQFLD---LCGTIH 532 (1071)
Q Consensus 458 e~al~~--~P~~~~lw~~~~~~e~~~g~~~~a~~~r~l~e~Al~~~~d~~~~l~~~~~~~lw~~~l~~~e~---~~G~~e 532 (1071)
..++.. -++...+-..|.++....|..++++ .+|.+.....| .+..|+...+ +||. .|| +.
T Consensus 448 i~a~~s~~~~~~~tl~s~~l~~~~e~~~~~~ar---k~y~~l~~lpp---------~sl~l~r~mi-q~e~~~~sc~-l~ 513 (568)
T KOG2396|consen 448 ISALLSVIGADSVTLKSKYLDWAYESGGYKKAR---KVYKSLQELPP---------FSLDLFRKMI-QFEKEQESCN-LA 513 (568)
T ss_pred HHHHHHhcCCceeehhHHHHHHHHHhcchHHHH---HHHHHHHhCCC---------ccHHHHHHHH-HHHhhHhhcC-ch
Confidence 333332 4567788889999999988888874 88888664322 5678999999 9994 455 99
Q ss_pred HHHHHHHHHHHhCCCC
Q 001481 533 DIRNAWNQHIKLFPHT 548 (1071)
Q Consensus 533 ~a~~~~~ra~~~~p~~ 548 (1071)
.++.+|++|+..|...
T Consensus 514 ~~r~~yd~a~~~fg~d 529 (568)
T KOG2396|consen 514 NIREYYDRALREFGAD 529 (568)
T ss_pred HHHHHHHHHHHHhCCC
Confidence 9999999999998643
No 53
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.59 E-value=2.4e-13 Score=138.16 Aligned_cols=206 Identities=14% Similarity=0.118 Sum_probs=123.6
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHH
Q 001481 325 FWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMER 404 (1071)
Q Consensus 325 lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~~A~~~~~~al~~~~p~~~~~w~~~a~le~ 404 (1071)
+.+.++.-|...|++..|+.-+++|+++ .|+....|...|.++...|..+.|.+.|++|+ .+.|+..++..+|+.|++
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~-DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl-sl~p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH-DPSYYLAHLVRAHYYQKLGENDLADESYRKAL-SLAPNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHcCChhhHHHHHHHHH-hcCCCccchhhhhhHHHH
Confidence 3444454455555555555555555554 44444555555555555555555555555555 455556666666666666
Q ss_pred HcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCC
Q 001481 405 RLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLLLEELIKFTMVHGGR 484 (1071)
Q Consensus 405 ~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~~~P~~~~lw~~~~~~e~~~g~~ 484 (1071)
..|.+++|...|++|+.. ...+.-+..|.++|.|-. +.|+.+.|+++|+++|+++|+.+.....+++.+.+.|+.
T Consensus 115 ~qg~~~eA~q~F~~Al~~----P~Y~~~s~t~eN~G~Cal-~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y 189 (250)
T COG3063 115 AQGRPEEAMQQFERALAD----PAYGEPSDTLENLGLCAL-KAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDY 189 (250)
T ss_pred hCCChHHHHHHHHHHHhC----CCCCCcchhhhhhHHHHh-hcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccc
Confidence 666666666666666554 113334455666666655 666666666666666666666666666666666666666
Q ss_pred CchhhHHHHHHHhhccCCcccccCChhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcc
Q 001481 485 SHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQQFLDLCGTIHDIRNAWNQHIKLFPHTVR 550 (1071)
Q Consensus 485 ~~a~~~r~l~e~Al~~~~d~~~~l~~~~~~~lw~~~l~~~e~~~G~~e~a~~~~~ra~~~~p~~~~ 550 (1071)
..++ ..+++-... .. -..+.||..+ +++..+|+...+-+.-.+..+.||.+..
T Consensus 190 ~~Ar---~~~~~~~~~-------~~-~~A~sL~L~i--riak~~gd~~~a~~Y~~qL~r~fP~s~e 242 (250)
T COG3063 190 APAR---LYLERYQQR-------GG-AQAESLLLGI--RIAKRLGDRAAAQRYQAQLQRLFPYSEE 242 (250)
T ss_pred hHHH---HHHHHHHhc-------cc-ccHHHHHHHH--HHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence 6553 444443321 11 3455666554 6888888888888888888888888654
No 54
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.57 E-value=6e-13 Score=153.09 Aligned_cols=207 Identities=14% Similarity=0.043 Sum_probs=186.9
Q ss_pred CChhHHHHHHHHHHHHHHhCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhccchHHHHH
Q 001481 284 LDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLF 363 (1071)
Q Consensus 284 ~~p~~~~~W~~y~~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~ 363 (1071)
.+|+..+.|...+.++.-+++.+.|++.|+||+..+|.+.-.+..++.-+.....+|.|...|++|+.+ .++.=.+|+.
T Consensus 416 ~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~-~~rhYnAwYG 494 (638)
T KOG1126|consen 416 TDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV-DPRHYNAWYG 494 (638)
T ss_pred hCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC-CchhhHHHHh
Confidence 467778899999999999999999999999999999999888888888888888899999999999987 4444578999
Q ss_pred HHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHH
Q 001481 364 NARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLT 443 (1071)
Q Consensus 364 ~a~~e~~~g~~~~A~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~ 443 (1071)
.+.++.+.++++.|.-.|++|+ +++|.+..+...++.++.+.|..|+|..+|++|+.+ +|.++...+..|.++
T Consensus 495 lG~vy~Kqek~e~Ae~~fqkA~-~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~l------d~kn~l~~~~~~~il 567 (638)
T KOG1126|consen 495 LGTVYLKQEKLEFAEFHFQKAV-EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHL------DPKNPLCKYHRASIL 567 (638)
T ss_pred hhhheeccchhhHHHHHHHhhh-cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhc------CCCCchhHHHHHHHH
Confidence 9999999999999999999999 899999999999999999999999999999999999 899999999999999
Q ss_pred HhhcCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCCCchhhHHHHHHHhhccCC
Q 001481 444 YTTTGSADNARDILIDGIKHVPNCKLLLEELIKFTMVHGGRSHISIVDAVISNALYSRP 502 (1071)
Q Consensus 444 ~~~~g~~e~Ar~i~e~al~~~P~~~~lw~~~~~~e~~~g~~~~a~~~r~l~e~Al~~~~ 502 (1071)
. ..+++++|...+|+.-+..|+...++...+...+..|..+.+. .-|.=|...+|
T Consensus 568 ~-~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al---~~f~~A~~ldp 622 (638)
T KOG1126|consen 568 F-SLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLAL---LHFSWALDLDP 622 (638)
T ss_pred H-hhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHH---HhhHHHhcCCC
Confidence 8 9999999999999999999999999999999999999887653 55555665555
No 55
>PLN03077 Protein ECB2; Provisional
Probab=99.55 E-value=1.1e-11 Score=159.70 Aligned_cols=199 Identities=11% Similarity=0.044 Sum_probs=157.5
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Q 001481 290 KNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKE 369 (1071)
Q Consensus 290 ~~W~~y~~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~ 369 (1071)
.+...+++.+.+.|+++.|..+|++. ..+...|..++..+...|+.++|..+|++..+.-..-+...+......+.
T Consensus 525 ~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~ 600 (857)
T PLN03077 525 FLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACS 600 (857)
T ss_pred eechHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHh
Confidence 35567888889999999999999987 56778999999999999999999999999886311111223444445677
Q ss_pred HhCCHHHHHHHHHHHhh--ccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhhc
Q 001481 370 QIGDTSAARAAFPESYI--DSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTT 447 (1071)
Q Consensus 370 ~~g~~~~A~~~~~~al~--~~~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~ 447 (1071)
..|.+++|+.+|+...+ .+.|+ ...|...++++.+.|.+++|.+++++.- . ..+..+|..+...+. ..
T Consensus 601 ~~g~v~ea~~~f~~M~~~~gi~P~-~~~y~~lv~~l~r~G~~~eA~~~~~~m~-~-------~pd~~~~~aLl~ac~-~~ 670 (857)
T PLN03077 601 RSGMVTQGLEYFHSMEEKYSITPN-LKHYACVVDLLGRAGKLTEAYNFINKMP-I-------TPDPAVWGALLNACR-IH 670 (857)
T ss_pred hcChHHHHHHHHHHHHHHhCCCCc-hHHHHHHHHHHHhCCCHHHHHHHHHHCC-C-------CCCHHHHHHHHHHHH-Hc
Confidence 89999999999999873 23443 5678889999999999999999998752 1 223566766666655 78
Q ss_pred CCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCCCchhhHHHHHH-HhhccCC
Q 001481 448 GSADNARDILIDGIKHVPNCKLLLEELIKFTMVHGGRSHISIVDAVIS-NALYSRP 502 (1071)
Q Consensus 448 g~~e~Ar~i~e~al~~~P~~~~lw~~~~~~e~~~g~~~~a~~~r~l~e-~Al~~~~ 502 (1071)
|+.+.|..+.+++++..|++...+..+++++...|+++++..+|...+ +.+.+.|
T Consensus 671 ~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~ 726 (857)
T PLN03077 671 RHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDP 726 (857)
T ss_pred CChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCC
Confidence 999999999999999999999999999999999999999887766654 4455444
No 56
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.55 E-value=1.1e-12 Score=140.30 Aligned_cols=193 Identities=16% Similarity=0.071 Sum_probs=173.2
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhccchHHHHHHHHH
Q 001481 288 QLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARY 367 (1071)
Q Consensus 288 ~~~~W~~y~~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~ 367 (1071)
....|..++..+...|++++|+..|++++...|.+..+|..++.++...|++++|+..|++++.. .+..+.++..++.+
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTL-NPNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCHHHHHHHHHH
Confidence 35678888888889999999999999999999999999999999999999999999999999986 66677889999999
Q ss_pred HHHhCCHHHHHHHHHHHhhcc-ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhh
Q 001481 368 KEQIGDTSAARAAFPESYIDS-DSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTT 446 (1071)
Q Consensus 368 e~~~g~~~~A~~~~~~al~~~-~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~ 446 (1071)
+...|++++|+..|.+++... .+....+|..++.++...|++++|+..|+++++. .+....++..+|.++. .
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~la~~~~-~ 181 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI------DPQRPESLLELAELYY-L 181 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CcCChHHHHHHHHHHH-H
Confidence 999999999999999998421 2455678889999999999999999999999998 6778889999999998 9
Q ss_pred cCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCCCchh
Q 001481 447 TGSADNARDILIDGIKHVPNCKLLLEELIKFTMVHGGRSHIS 488 (1071)
Q Consensus 447 ~g~~e~Ar~i~e~al~~~P~~~~lw~~~~~~e~~~g~~~~a~ 488 (1071)
.|++++|..+|+++++..|.+...|...+.+....|+.+.++
T Consensus 182 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 223 (234)
T TIGR02521 182 RGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQ 223 (234)
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHH
Confidence 999999999999999998888888888888888888887764
No 57
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.53 E-value=4.1e-11 Score=140.81 Aligned_cols=145 Identities=11% Similarity=-0.007 Sum_probs=118.9
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHH----------hcCCCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHHHH
Q 001481 26 LEEFIAEGSLDFDEWTSLLSEIE----------NSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEV 95 (1071)
Q Consensus 26 le~al~~nP~d~~~W~~li~~~~----------~~~~~~~~~a~~vyeraL~~~P~s~~lW~~~a~~e~~~~~~e~A~~l 95 (1071)
+-..+-.-|..+..|..--..-+ ...+|+++.|++.+.++.+..|...-.+...++.....|+++.|...
T Consensus 61 l~~~~~~~p~~~~~~~~~r~~~k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~ 140 (409)
T TIGR00540 61 GLRRFFRLGAHSRGWFSGRKRRKAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQH 140 (409)
T ss_pred HHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 33445567777777766433211 11348999999999999999999888899999999999999999999
Q ss_pred HHHHHHhcCCCH-HHHHHHHHHHHhhCCChhHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhcc
Q 001481 96 FERAVQSATYSV-DVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRF 174 (1071)
Q Consensus 96 ferAL~~~P~s~-~lW~~y~~~~~~~~~~~e~ar~l~erAL~~~~~~~~s~~lW~~yi~fe~~~~~~~~a~~iy~ral~~ 174 (1071)
|+++++..|.+. .+...++++.+.. ++++.|+..+++.++..|. +..++..++.+....++++.+.+++.+.++.
T Consensus 141 l~~a~~~~p~~~l~~~~~~a~l~l~~-~~~~~Al~~l~~l~~~~P~---~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~ 216 (409)
T TIGR00540 141 LEEAAELAGNDNILVEIARTRILLAQ-NELHAARHGVDKLLEMAPR---HKEVLKLAEEAYIRSGAWQALDDIIDNMAKA 216 (409)
T ss_pred HHHHHHhCCcCchHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 999999998874 6888889999888 9999999999999998776 4568888888888889999998888888753
No 58
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=99.52 E-value=4.8e-14 Score=156.18 Aligned_cols=132 Identities=22% Similarity=0.384 Sum_probs=117.4
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 001481 39 EWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARL-CSIDKVVEVFERAVQSATYSVDVWFHYCSLS 117 (1071)
Q Consensus 39 ~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P~s~~lW~~~a~~e~~~-~~~e~A~~lferAL~~~P~s~~lW~~y~~~~ 117 (1071)
.|+.|+++++.. +.++.||.+|++|++..+.++.+|..+|.+|... ++.+.|++|||++|+.+|.+.++|+.|++|+
T Consensus 3 v~i~~m~~~~r~--~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRT--EGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 699999999887 7899999999999977777899999999999985 5666699999999999999999999999999
Q ss_pred HhhCCChhHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhc
Q 001481 118 MSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLR 173 (1071)
Q Consensus 118 ~~~~~~~e~ar~l~erAL~~~~~~~~s~~lW~~yi~fe~~~~~~~~a~~iy~ral~ 173 (1071)
+.. ++.+.||.+|+||+..++.+..+..||..|++||...|+.+.+++|+.|+..
T Consensus 81 ~~~-~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKL-NDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHT-T-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHh-CcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 998 9999999999999999887654578999999999999999999999999976
No 59
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.52 E-value=1.5e-12 Score=132.35 Aligned_cols=189 Identities=18% Similarity=0.122 Sum_probs=169.3
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Q 001481 290 KNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKE 369 (1071)
Q Consensus 290 ~~W~~y~~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~ 369 (1071)
++.+.++.-+...|++..|...+++||..+|.+...|..+|.++...|..+.|.+.|++|+.+ .|++.++...|+.|++
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl-~p~~GdVLNNYG~FLC 114 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSL-APNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc-CCCccchhhhhhHHHH
Confidence 345556666678999999999999999999999999999999999999999999999999997 7888899999999999
Q ss_pred HhCCHHHHHHHHHHHhhccCh---hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhh
Q 001481 370 QIGDTSAARAAFPESYIDSDS---RFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTT 446 (1071)
Q Consensus 370 ~~g~~~~A~~~~~~al~~~~p---~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~ 446 (1071)
..|++++|...|++|+. +| ...+.|-+.+.+-.+.|.++.|+..|+++++. +|..+.....++..++ .
T Consensus 115 ~qg~~~eA~q~F~~Al~--~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~------dp~~~~~~l~~a~~~~-~ 185 (250)
T COG3063 115 AQGRPEEAMQQFERALA--DPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL------DPQFPPALLELARLHY-K 185 (250)
T ss_pred hCCChHHHHHHHHHHHh--CCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh------CcCCChHHHHHHHHHH-h
Confidence 99999999999999984 34 44677889999999999999999999999999 8899999999999998 9
Q ss_pred cCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCCCchh
Q 001481 447 TGSADNARDILIDGIKHVPNCKLLLEELIKFTMVHGGRSHIS 488 (1071)
Q Consensus 447 ~g~~e~Ar~i~e~al~~~P~~~~lw~~~~~~e~~~g~~~~a~ 488 (1071)
.|++-.||..|++-....+-..+-...-++|+...||...+.
T Consensus 186 ~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~ 227 (250)
T COG3063 186 AGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQ 227 (250)
T ss_pred cccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHH
Confidence 999999999999999887776665555789999999877664
No 60
>PRK12370 invasion protein regulator; Provisional
Probab=99.52 E-value=2.8e-12 Score=156.31 Aligned_cols=249 Identities=10% Similarity=-0.054 Sum_probs=192.5
Q ss_pred HHHHHHHHHHhcccCcCCCCCChhHHHHHHHHHHHHHH---------hCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 001481 264 DEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEK---------QGDFDWVVKLYERCLIPCADYPEFWMRYVDFME 334 (1071)
Q Consensus 264 ~~~~~~fE~ai~~~~~~~~~~~p~~~~~W~~y~~~~~~---------~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~ 334 (1071)
..++..|+++++ ++|+....|..++.++.. .+++++|...+++|+..+|++..+|..++..+.
T Consensus 278 ~~A~~~~~~Al~--------ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~ 349 (553)
T PRK12370 278 QQALKLLTQCVN--------MSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINT 349 (553)
T ss_pred HHHHHHHHHHHh--------cCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 345566777765 578888888777665432 235789999999999999999999999999999
Q ss_pred hhCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHH
Q 001481 335 SKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACD 414 (1071)
Q Consensus 335 ~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~~A~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~ 414 (1071)
..|++++|...|++|+++ .|+++.+|+.++.++...|++++|+..|++++ .++|.+...++..+.+....|++++|+.
T Consensus 350 ~~g~~~~A~~~~~~Al~l-~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al-~l~P~~~~~~~~~~~~~~~~g~~eeA~~ 427 (553)
T PRK12370 350 IHSEYIVGSLLFKQANLL-SPISADIKYYYGWNLFMAGQLEEALQTINECL-KLDPTRAAAGITKLWITYYHTGIDDAIR 427 (553)
T ss_pred HccCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-hcCCCChhhHHHHHHHHHhccCHHHHHH
Confidence 999999999999999997 78888899999999999999999999999999 7889877665555555667899999999
Q ss_pred HHHHHHHHHhhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCCCchhhHHHHH
Q 001481 415 TYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLLLEELIKFTMVHGGRSHISIVDAVI 494 (1071)
Q Consensus 415 ~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~~~P~~~~lw~~~~~~e~~~g~~~~a~~~r~l~ 494 (1071)
+|+++++.. .|..+.++..+|.++. ..|++++|+..|++.+...|.+...+..++......|+ .+. ..+
T Consensus 428 ~~~~~l~~~-----~p~~~~~~~~la~~l~-~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~---~~l 496 (553)
T PRK12370 428 LGDELRSQH-----LQDNPILLSMQVMFLS-LKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RAL---PTI 496 (553)
T ss_pred HHHHHHHhc-----cccCHHHHHHHHHHHH-hCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHH---HHH
Confidence 999998762 3667888999999988 89999999999999998899888888888777777774 332 444
Q ss_pred HHhhccCCcccccCChhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 001481 495 SNALYSRPDVLKVFSLEDVEDISSLYLQQFLDLCGTIHDIRNAWNQHIKL 544 (1071)
Q Consensus 495 e~Al~~~~d~~~~l~~~~~~~lw~~~l~~~e~~~G~~e~a~~~~~ra~~~ 544 (1071)
++.+... ...+.... | .. .|+--.|+.+.+... .++.+.
T Consensus 497 ~~ll~~~-----~~~~~~~~--~--~~-~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 497 REFLESE-----QRIDNNPG--L--LP-LVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred HHHHHHh-----hHhhcCch--H--HH-HHHHHHhhhHHHHHH-HHhhcc
Confidence 4433210 00001111 1 22 456677887776666 555554
No 61
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=3.8e-11 Score=135.64 Aligned_cols=366 Identities=12% Similarity=0.087 Sum_probs=252.9
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH--HHHhcCCCHHHHHHHHHHHHhhCCC
Q 001481 46 EIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFER--AVQSATYSVDVWFHYCSLSMSTFED 123 (1071)
Q Consensus 46 ~~~~~~~~~~~~a~~vyeraL~~~P~s~~lW~~~a~~e~~~~~~e~A~~lfer--AL~~~P~s~~lW~~y~~~~~~~~~~ 123 (1071)
.+... ...++||..|..|+..++.+.+....++..++- ...+...+|+. +-.....+++.-..+.........+
T Consensus 150 ~y~al--~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~ml--t~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n 225 (611)
T KOG1173|consen 150 VYVAL--DNREEARDKYKEALLADAKCFEAFEKLVSAHML--TAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRN 225 (611)
T ss_pred hhhhh--ccHHHHHHHHHHHHhcchhhHHHHHHHHHHHhc--chhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhcc
Confidence 34444 688999999999999999999999999887764 22334444442 0002233455544444433211111
Q ss_pred hhHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhcc-CCccHHHHHHHHHHHHHhHHHhhhhhch
Q 001481 124 PNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRF-PSKKLHHYYDSFKKLAGAWKEELECESD 202 (1071)
Q Consensus 124 ~e~ar~l~erAL~~~~~~~~s~~lW~~yi~fe~~~~~~~~a~~iy~ral~~-p~~~l~~~~~~~~~~~~~~~e~l~~~~~ 202 (1071)
.+...+.=+..+. +.. ++..|-..-++-.-....+..+.+|+...+++ |.+.-+..+. |.|
T Consensus 226 ~~~~~r~~~~sl~--~l~-~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~------------ia~--- 287 (611)
T KOG1173|consen 226 EESLTRNEDESLI--GLA-ENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLH------------IAC--- 287 (611)
T ss_pred ccccccCchhhhh--hhh-hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHH------------HHH---
Confidence 1100000001111 111 13445555555555567788888898888763 4332111000 000
Q ss_pred hhHHHHHHHhhcCCccCCcccchhhHHHhhhcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCCC
Q 001481 203 SAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVK 282 (1071)
Q Consensus 203 ~~~~~~~~~~~~~~l~~~~~~~e~~~~i~~~~d~~~~~~~a~~l~~~~~~~~~~y~~a~~~~~~~~~fE~ai~~~~~~~~ 282 (1071)
+...+. ...+|.-+.++.
T Consensus 288 --------l~el~~------------------------------------~n~Lf~lsh~LV------------------ 305 (611)
T KOG1173|consen 288 --------LYELGK------------------------------------SNKLFLLSHKLV------------------ 305 (611)
T ss_pred --------HHHhcc------------------------------------cchHHHHHHHHH------------------
Confidence 000000 000111111111
Q ss_pred CCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhccc--hHH
Q 001481 283 PLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRL--PVI 360 (1071)
Q Consensus 283 ~~~p~~~~~W~~y~~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~--p~i 360 (1071)
...|+..-.|...+.++...|++.+|+..|-+|...+|.+...|+.||..+.-.|..|.|...|.+|.++ .+.+ |.+
T Consensus 306 ~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~L 384 (611)
T KOG1173|consen 306 DLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSL 384 (611)
T ss_pred HhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHH
Confidence 1356666789999999999999999999999999999999999999999999999999999999999997 4433 433
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcc-CCCcHHHHHHH
Q 001481 361 HLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRK-FHTLPLLYVQF 439 (1071)
Q Consensus 361 ~~~~a~~e~~~g~~~~A~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~-~p~~~~l~~~~ 439 (1071)
+ .+.=+.+.++++-|...|..|+ .+.|..+-+....+.+....+.+.+|...|..++..++.... .+....++.++
T Consensus 385 Y--lgmey~~t~n~kLAe~Ff~~A~-ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NL 461 (611)
T KOG1173|consen 385 Y--LGMEYMRTNNLKLAEKFFKQAL-AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNL 461 (611)
T ss_pred H--HHHHHHHhccHHHHHHHHHHHH-hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhH
Confidence 3 3344567899999999999999 889999988888888888889999999999999966543221 12234578999
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCCCchhhHHHHHHHhhccCCc
Q 001481 440 SRLTYTTTGSADNARDILIDGIKHVPNCKLLLEELIKFTMVHGGRSHISIVDAVISNALYSRPD 503 (1071)
Q Consensus 440 A~~~~~~~g~~e~Ar~i~e~al~~~P~~~~lw~~~~~~e~~~g~~~~a~~~r~l~e~Al~~~~d 503 (1071)
|.++. .++.+++|+..|++||..+|.+..++...+-+....|+++.|. +.|.+||...|+
T Consensus 462 GH~~R-kl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Ai---d~fhKaL~l~p~ 521 (611)
T KOG1173|consen 462 GHAYR-KLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAI---DHFHKALALKPD 521 (611)
T ss_pred HHHHH-HHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHH---HHHHHHHhcCCc
Confidence 99987 9999999999999999999999999988888888899999885 999999977664
No 62
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.49 E-value=3e-11 Score=131.65 Aligned_cols=460 Identities=12% Similarity=0.072 Sum_probs=280.3
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHH--HHCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcCCCH-HHHHHHHHHH-
Q 001481 42 SLLSEIENSCPDDIEMIGLVYDSFL--AEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSV-DVWFHYCSLS- 117 (1071)
Q Consensus 42 ~li~~~~~~~~~~~~~a~~vyeraL--~~~P~s~~lW~~~a~~e~~~~~~e~A~~lferAL~~~P~s~-~lW~~y~~~~- 117 (1071)
.|+.-|+.. ....+|...|+-.+ +.||+...+-.....+.++..+|.+|++.|.-||...|.-- +..+..+.-+
T Consensus 206 nlaqqy~~n--dm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nig 283 (840)
T KOG2003|consen 206 NLAQQYEAN--DMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIG 283 (840)
T ss_pred HHHHHhhhh--HHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcC
Confidence 334434433 44566667777766 46888877777777778888889999999999999988522 2322221111
Q ss_pred --HhhCCChhHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhccCCccHHH------------HH
Q 001481 118 --MSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHH------------YY 183 (1071)
Q Consensus 118 --~~~~~~~e~ar~l~erAL~~~~~~~~s~~lW~~yi~fe~~~~~~~~a~~iy~ral~~p~~~l~~------------~~ 183 (1071)
.-..|.++.|...|+.++...|.......| ..+-| ..++-++.++.|.+.|.+|..--.. +.
T Consensus 284 vtfiq~gqy~dainsfdh~m~~~pn~~a~~nl--~i~~f--~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll 359 (840)
T KOG2003|consen 284 VTFIQAGQYDDAINSFDHCMEEAPNFIAALNL--IICAF--AIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLL 359 (840)
T ss_pred eeEEecccchhhHhhHHHHHHhCccHHhhhhh--hhhhe--ecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHH
Confidence 111278999999999998866542111111 11111 2467788999999998766421000 00
Q ss_pred ------HHHHHHHHhHHHhhhhhchhhHHH--HHHHhhcCCccCCcccchhhHH--H--hhhcCcchhHHHHHHHHHHHH
Q 001481 184 ------DSFKKLAGAWKEELECESDSAMEF--QSELVLEGEVPAYYKDDETSSV--I--KDLLDPSVDLVRSKAIQKYRF 251 (1071)
Q Consensus 184 ------~~~~~~~~~~~e~l~~~~~~~~~~--~~~~~~~~~l~~~~~~~e~~~~--i--~~~~d~~~~~~~a~~l~~~~~ 251 (1071)
+.++.|.++. +..+... +...++.-.+...+..---|.+ + ....+.+.+++-.++ ...
T Consensus 360 ~eai~nd~lk~~ek~~-------ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka---~~~ 429 (840)
T KOG2003|consen 360 NEAIKNDHLKNMEKEN-------KADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKA---GEL 429 (840)
T ss_pred HHHHhhHHHHHHHHhh-------hhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHH---HHH
Confidence 0111111110 0111110 1111111111100000000000 0 000000001000000 001
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCcCCCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 001481 252 IGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVD 331 (1071)
Q Consensus 252 ~~~~~y~~a~~~~~~~~~fE~ai~~~~~~~~~~~p~~~~~W~~y~~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~ 331 (1071)
++.+.|+.|.+ .+++||+.-.+ ...-...-...+.|+.-..++..|...-+.||..+..++.+...-+.
T Consensus 430 lk~~d~~~aie---ilkv~~~kdnk--------~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn 498 (840)
T KOG2003|consen 430 LKNGDIEGAIE---ILKVFEKKDNK--------TASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGN 498 (840)
T ss_pred HhccCHHHHHH---HHHHHHhccch--------hhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCc
Confidence 12222332322 22344432111 00001112223344444457888999999999988888888888888
Q ss_pred HHHhhCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHH
Q 001481 332 FMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVA 411 (1071)
Q Consensus 332 ~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~~A~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~ 411 (1071)
.....|+++.|.+.|+.|+.. ...|....+..+...+..|++++|+.+|-+.- .+..+++.+++..++++..+.+...
T Consensus 499 ~~f~ngd~dka~~~ykeal~n-dasc~ealfniglt~e~~~~ldeald~f~klh-~il~nn~evl~qianiye~led~aq 576 (840)
T KOG2003|consen 499 IAFANGDLDKAAEFYKEALNN-DASCTEALFNIGLTAEALGNLDEALDCFLKLH-AILLNNAEVLVQIANIYELLEDPAQ 576 (840)
T ss_pred eeeecCcHHHHHHHHHHHHcC-chHHHHHHHHhcccHHHhcCHHHHHHHHHHHH-HHHHhhHHHHHHHHHHHHHhhCHHH
Confidence 777889999999999999974 33455667777777889999999999998875 4456789999999999999999999
Q ss_pred HHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCCCchhhHH
Q 001481 412 ACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLLLEELIKFTMVHGGRSHISIVD 491 (1071)
Q Consensus 412 A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~~~P~~~~lw~~~~~~e~~~g~~~~a~~~r 491 (1071)
|+++|..+..+ .|++|.+...+|.+|- ..||...|+.++-...+.+|.+.+...-++.++....-.+++ -
T Consensus 577 aie~~~q~~sl------ip~dp~ilskl~dlyd-qegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~eka---i 646 (840)
T KOG2003|consen 577 AIELLMQANSL------IPNDPAILSKLADLYD-QEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKA---I 646 (840)
T ss_pred HHHHHHHhccc------CCCCHHHHHHHHHHhh-cccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHH---H
Confidence 99999999988 7999999999999998 999999999999999999999876433222222222222333 3
Q ss_pred HHHHHhhccCCcccccCChhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcc
Q 001481 492 AVISNALYSRPDVLKVFSLEDVEDISSLYLQQFLDLCGTIHDIRNAWNQHIKLFPHTVR 550 (1071)
Q Consensus 492 ~l~e~Al~~~~d~~~~l~~~~~~~lw~~~l~~~e~~~G~~e~a~~~~~ra~~~~p~~~~ 550 (1071)
..|++|-..-|. ..-|...+-.-.++.|++..|++.|....+.||....
T Consensus 647 ~y~ekaaliqp~----------~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedld 695 (840)
T KOG2003|consen 647 NYFEKAALIQPN----------QSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLD 695 (840)
T ss_pred HHHHHHHhcCcc----------HHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchH
Confidence 788888654441 2347666624447899999999999999999998765
No 63
>PRK12370 invasion protein regulator; Provisional
Probab=99.48 E-value=4.9e-12 Score=154.23 Aligned_cols=204 Identities=12% Similarity=0.004 Sum_probs=170.5
Q ss_pred ChhHHHHHHHHHHHH--HH---hCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhh---------CCHHHHHHHHHHHH
Q 001481 285 DDIQLKNWHDYLSFA--EK---QGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESK---------GGREIASYALDRAT 350 (1071)
Q Consensus 285 ~p~~~~~W~~y~~~~--~~---~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~---------g~~e~A~~il~rAl 350 (1071)
.+.+++.|..|..-. .. .++.++|+.+|++|+..+|++...|..++.++... +++++|...+++|+
T Consensus 252 ~~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 252 ELNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CCCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 345556555554432 11 23567999999999999999999999988765533 33789999999999
Q ss_pred HHhhccchHHHHHHHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCC
Q 001481 351 QIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFH 430 (1071)
Q Consensus 351 ~~~~~~~p~i~~~~a~~e~~~g~~~~A~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p 430 (1071)
++ .|.++.+|..++.++...|++++|...|++++ +++|++..+|+.++.++...|++++|+..|++|+++ .|
T Consensus 332 ~l-dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al-~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l------~P 403 (553)
T PRK12370 332 EL-DHNNPQALGLLGLINTIHSEYIVGSLLFKQAN-LLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL------DP 403 (553)
T ss_pred hc-CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc------CC
Confidence 97 78888999999999999999999999999999 789999999999999999999999999999999999 77
Q ss_pred CcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhC-CChHHHHHHHHHHHHHcCCCCchhhHHHHHHHhhcc
Q 001481 431 TLPLLYVQFSRLTYTTTGSADNARDILIDGIKHV-PNCKLLLEELIKFTMVHGGRSHISIVDAVISNALYS 500 (1071)
Q Consensus 431 ~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~~~-P~~~~lw~~~~~~e~~~g~~~~a~~~r~l~e~Al~~ 500 (1071)
..+..+..++.+++ ..|++++|+..|+++++.. |+++..+..++.++...|+.++++ ..+++.+..
T Consensus 404 ~~~~~~~~~~~~~~-~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~---~~~~~~~~~ 470 (553)
T PRK12370 404 TRAAAGITKLWITY-YHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELAR---KLTKEISTQ 470 (553)
T ss_pred CChhhHHHHHHHHH-hccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHH---HHHHHhhhc
Confidence 77766666666666 7899999999999999885 778888888999998999988875 778876643
No 64
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.48 E-value=6.6e-12 Score=134.27 Aligned_cols=205 Identities=17% Similarity=0.153 Sum_probs=175.8
Q ss_pred CHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHH
Q 001481 322 YPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKAN 401 (1071)
Q Consensus 322 ~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~~A~~~~~~al~~~~p~~~~~w~~~a~ 401 (1071)
...+|+.++..+...|++++|+..+++++.. .|..+.++...+.++...|++++|+..|.+++ ...|....+|..++.
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~-~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEH-DPDDYLAYLALALYYQQLGELEKAEDSFRRAL-TLNPNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hhCCCCHHHHHHHHH
Confidence 4678899999999999999999999999986 66677888889999999999999999999999 677888899999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHc
Q 001481 402 MERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLLLEELIKFTMVH 481 (1071)
Q Consensus 402 le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~~~P~~~~lw~~~~~~e~~~ 481 (1071)
++...|++++|+..|++++.... .+....++..+|.++. ..|++++|...|+++++..|.+...|..++.+....
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 182 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPL----YPQPARSLENAGLCAL-KAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLR 182 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccc----cccchHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHc
Confidence 99999999999999999997511 3456678888999988 999999999999999999999999999999999999
Q ss_pred CCCCchhhHHHHHHHhhccCCcccccCChhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 001481 482 GGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQQFLDLCGTIHDIRNAWNQHIKLFP 546 (1071)
Q Consensus 482 g~~~~a~~~r~l~e~Al~~~~d~~~~l~~~~~~~lw~~~l~~~e~~~G~~e~a~~~~~ra~~~~p 546 (1071)
|+.+.+. .++++++...+ ... ..|...+ .+....|+.+.+..+.+++.+.+|
T Consensus 183 ~~~~~A~---~~~~~~~~~~~--------~~~-~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 183 GQYKDAR---AYLERYQQTYN--------QTA-ESLWLGI-RIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred CCHHHHH---HHHHHHHHhCC--------CCH-HHHHHHH-HHHHHHhhHHHHHHHHHHHHhhCc
Confidence 9988774 88898886422 233 3444667 788889999999998888776654
No 65
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.47 E-value=2.2e-10 Score=134.07 Aligned_cols=319 Identities=10% Similarity=0.058 Sum_probs=186.0
Q ss_pred HHHHHhCCCCHHHHHHHHHH----------HHhcCCCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 001481 27 EEFIAEGSLDFDEWTSLLSE----------IENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVF 96 (1071)
Q Consensus 27 e~al~~nP~d~~~W~~li~~----------~~~~~~~~~~~a~~vyeraL~~~P~s~~lW~~~a~~e~~~~~~e~A~~lf 96 (1071)
-..+-.-|..+..|..--+. +....+|++++|++...++-+..+...-.+...+......|+++.|...|
T Consensus 62 ~~~~~~~p~~~~~~~~~rr~~~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l 141 (398)
T PRK10747 62 LRRIFRTGARTRGWFVGRKRRRARKQTEQALLKLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHL 141 (398)
T ss_pred HHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 34455567777777554221 11112378888887777666544333444555566667888899999999
Q ss_pred HHHHHhcCCCH-HHHHHHHHHHHhhCCChhHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhccC
Q 001481 97 ERAVQSATYSV-DVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFP 175 (1071)
Q Consensus 97 erAL~~~P~s~-~lW~~y~~~~~~~~~~~e~ar~l~erAL~~~~~~~~s~~lW~~yi~fe~~~~~~~~a~~iy~ral~~p 175 (1071)
++|.+..|.+. -..+..+++.+.. ++++.|..+++++++..|.+ .......+......++++.+..++.+..+.-
T Consensus 142 ~~A~~~~~~~~~~~~l~~a~l~l~~-g~~~~Al~~l~~~~~~~P~~---~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~ 217 (398)
T PRK10747 142 ERAAELADNDQLPVEITRVRIQLAR-NENHAARHGVDKLLEVAPRH---PEVLRLAEQAYIRTGAWSSLLDILPSMAKAH 217 (398)
T ss_pred HHHHhcCCcchHHHHHHHHHHHHHC-CCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHHHhHHHHHHHHHHHHHcC
Confidence 99988877764 3333446677766 88899999999888877763 4455566666666677777777777665421
Q ss_pred CccHHHHHHHHHHHHHhHHHhhhhhchhhHHHHHHHhhcCCccCCcccchhhHHHhhhcCcchhHHHHHHHHHHHHHHHH
Q 001481 176 SKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQ 255 (1071)
Q Consensus 176 ~~~l~~~~~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~i~~~~d~~~~~~~a~~l~~~~~~~~~ 255 (1071)
..+-.. . ..+...
T Consensus 218 ~~~~~~-~---~~l~~~--------------------------------------------------------------- 230 (398)
T PRK10747 218 VGDEEH-R---AMLEQQ--------------------------------------------------------------- 230 (398)
T ss_pred CCCHHH-H---HHHHHH---------------------------------------------------------------
Confidence 111000 0 000000
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCcCCCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh
Q 001481 256 IYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMES 335 (1071)
Q Consensus 256 ~y~~a~~~~~~~~~fE~ai~~~~~~~~~~~p~~~~~W~~y~~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~ 335 (1071)
.|..++.-.....+.+....+++......++++.++..|+..+..
T Consensus 231 -----------------------------------a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~ 275 (398)
T PRK10747 231 -----------------------------------AWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIE 275 (398)
T ss_pred -----------------------------------HHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHH
Confidence 000000000011122222333333323335566677777777777
Q ss_pred hCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHH
Q 001481 336 KGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDT 415 (1071)
Q Consensus 336 ~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~~A~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~~ 415 (1071)
.|+.++|..+++++++. +.++.+...++.+ ..++.+++++.+++.+ ...|++..+++.++.+..+.|++++|++.
T Consensus 276 ~g~~~~A~~~L~~~l~~--~~~~~l~~l~~~l--~~~~~~~al~~~e~~l-k~~P~~~~l~l~lgrl~~~~~~~~~A~~~ 350 (398)
T PRK10747 276 CDDHDTAQQIILDGLKR--QYDERLVLLIPRL--KTNNPEQLEKVLRQQI-KQHGDTPLLWSTLGQLLMKHGEWQEASLA 350 (398)
T ss_pred CCCHHHHHHHHHHHHhc--CCCHHHHHHHhhc--cCCChHHHHHHHHHHH-hhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 77777777777776652 2234444444443 2366667777776666 44666666777777777777777777777
Q ss_pred HHHHHHHHhhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhC
Q 001481 416 YKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHV 464 (1071)
Q Consensus 416 y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~~~ 464 (1071)
|+++++. .|. ...++.+|.++. ..|+.++|..+|++|+...
T Consensus 351 le~al~~------~P~-~~~~~~La~~~~-~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 351 FRAALKQ------RPD-AYDYAWLADALD-RLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHhc------CCC-HHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhh
Confidence 7777765 344 334556666666 6777777777777776543
No 66
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.45 E-value=8.6e-11 Score=138.11 Aligned_cols=290 Identities=8% Similarity=-0.062 Sum_probs=215.9
Q ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 001481 23 KQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCY-GYWRKYADHKARLCSIDKVVEVFERAVQ 101 (1071)
Q Consensus 23 ~~~le~al~~nP~d~~~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P~s~-~lW~~~a~~e~~~~~~e~A~~lferAL~ 101 (1071)
.+.+.++.+..|...-.++..++.+... |+.+++...|+++++.+|.+. .+...++++.+..++++.|+..|++.++
T Consensus 104 ~~~l~~~~~~~~~~~~~~llaA~aa~~~--g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~ 181 (409)
T TIGR00540 104 EKLIAKNADHAAEPVLNLIKAAEAAQQR--GDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLE 181 (409)
T ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3467777788888888888888888877 999999999999999999985 6788889999999999999999999999
Q ss_pred hcCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhccCCccHHH
Q 001481 102 SATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHH 181 (1071)
Q Consensus 102 ~~P~s~~lW~~y~~~~~~~~~~~e~ar~l~erAL~~~~~~~~s~~lW~~yi~fe~~~~~~~~a~~iy~ral~~p~~~l~~ 181 (1071)
..|.+..++..++..+... ++++.+.+++++.++....+ ..- ...++. .+
T Consensus 182 ~~P~~~~~l~ll~~~~~~~-~d~~~a~~~l~~l~k~~~~~---~~~-------------~~~l~~---~a---------- 231 (409)
T TIGR00540 182 MAPRHKEVLKLAEEAYIRS-GAWQALDDIIDNMAKAGLFD---DEE-------------FADLEQ---KA---------- 231 (409)
T ss_pred hCCCCHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHcCCCC---HHH-------------HHHHHH---HH----------
Confidence 9999999999999999998 99999999999988763221 110 000000 00
Q ss_pred HHHHHHHHHHhHHHhhhhhchhhHHHHHHHhhcCCccCCcccchhhHHHhhhcCcchhHHHHHHHHHHHHHHHHHHHHHH
Q 001481 182 YYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEAS 261 (1071)
Q Consensus 182 ~~~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~i~~~~d~~~~~~~a~~l~~~~~~~~~~y~~a~ 261 (1071)
+ ...+.. ... +.. .
T Consensus 232 -~---~~~l~~---~~~------------------------~~~-----------------------------------~ 245 (409)
T TIGR00540 232 -E---IGLLDE---AMA------------------------DEG-----------------------------------I 245 (409)
T ss_pred -H---HHHHHH---HHH------------------------hcC-----------------------------------H
Confidence 0 000000 000 000 0
Q ss_pred HHHHHHHHHHHHhcccCcCCCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHhhcCCCCCHHHHHHHHH--HHHhhCCH
Q 001481 262 QLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVD--FMESKGGR 339 (1071)
Q Consensus 262 ~~~~~~~~fE~ai~~~~~~~~~~~p~~~~~W~~y~~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~--~l~~~g~~ 339 (1071)
+.....+ ..+ ....+++..++..++..+...|+++.|..+++++++..|++....+.... .....++.
T Consensus 246 ~~L~~~~---~~~-------p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~ 315 (409)
T TIGR00540 246 DGLLNWW---KNQ-------PRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDN 315 (409)
T ss_pred HHHHHHH---HHC-------CHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCCh
Confidence 0000000 000 00112456789999999999999999999999999999988764211111 12234678
Q ss_pred HHHHHHHHHHHHHhhccch--HHHHHHHHHHHHhCCHHHHHHHHHH--HhhccChhhHHHHHHHHHHHHHcCCHHHHHHH
Q 001481 340 EIASYALDRATQIFLKRLP--VIHLFNARYKEQIGDTSAARAAFPE--SYIDSDSRFIEKVTFKANMERRLGNFVAACDT 415 (1071)
Q Consensus 340 e~A~~il~rAl~~~~~~~p--~i~~~~a~~e~~~g~~~~A~~~~~~--al~~~~p~~~~~w~~~a~le~~~g~~~~A~~~ 415 (1071)
+.++..++++++. .|++| .+...+++++.+.|++++|++.|++ ++ ...|+... +..++.++.+.|+.++|+++
T Consensus 316 ~~~~~~~e~~lk~-~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~-~~~p~~~~-~~~La~ll~~~g~~~~A~~~ 392 (409)
T TIGR00540 316 EKLEKLIEKQAKN-VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAAC-KEQLDAND-LAMAADAFDQAGDKAEAAAM 392 (409)
T ss_pred HHHHHHHHHHHHh-CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHh-hcCCCHHH-HHHHHHHHHHcCCHHHHHHH
Confidence 8999999999987 88899 8888999999999999999999994 65 45676554 66999999999999999999
Q ss_pred HHHHHHHH
Q 001481 416 YKEALETA 423 (1071)
Q Consensus 416 y~~Al~~~ 423 (1071)
|++++..+
T Consensus 393 ~~~~l~~~ 400 (409)
T TIGR00540 393 RQDSLGLM 400 (409)
T ss_pred HHHHHHHH
Confidence 99998875
No 67
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.45 E-value=1.9e-09 Score=126.12 Aligned_cols=257 Identities=12% Similarity=0.043 Sum_probs=193.4
Q ss_pred HHHHHHHHhcccCcCCCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHhhcC-CCCCHHHHHHHHHHHHhhCCHHHHHH
Q 001481 266 KINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIP-CADYPEFWMRYVDFMESKGGREIASY 344 (1071)
Q Consensus 266 ~~~~fE~ai~~~~~~~~~~~p~~~~~W~~y~~~~~~~g~~~~a~~~yerAL~~-~p~~~~lW~~ya~~l~~~g~~e~A~~ 344 (1071)
.+..+|+++. .+|++..+-+.++-.+...++.+.|.....++|+. ..++...|.-+|.++...+++.+|..
T Consensus 463 slqale~av~--------~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~ 534 (799)
T KOG4162|consen 463 SLQALEEAVQ--------FDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALD 534 (799)
T ss_pred HHHHHHHHHh--------cCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHH
Confidence 4456677765 34555566666666667788899999999999998 66778999999999999999999999
Q ss_pred HHHHHHHHhhccchHHHHHHHHHHHHhCC-------------------------------------------HHHHHHHH
Q 001481 345 ALDRATQIFLKRLPVIHLFNARYKEQIGD-------------------------------------------TSAARAAF 381 (1071)
Q Consensus 345 il~rAl~~~~~~~p~i~~~~a~~e~~~g~-------------------------------------------~~~A~~~~ 381 (1071)
+.+-|++-+..+.- +-..-+.++...++ ..+|.+.+
T Consensus 535 vvd~al~E~~~N~~-l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~s 613 (799)
T KOG4162|consen 535 VVDAALEEFGDNHV-LMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTS 613 (799)
T ss_pred HHHHHHHHhhhhhh-hchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhh
Confidence 99999886322110 00000001111111 11222222
Q ss_pred HHHhh-------c-----------cCh-------hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHH
Q 001481 382 PESYI-------D-----------SDS-------RFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLY 436 (1071)
Q Consensus 382 ~~al~-------~-----------~~p-------~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~ 436 (1071)
.++.. . ..| ....+|...+.+..+.++.++|+.++.+|-+. ++..+.+|
T Consensus 614 r~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~------~~l~~~~~ 687 (799)
T KOG4162|consen 614 RYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI------DPLSASVY 687 (799)
T ss_pred HHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc------chhhHHHH
Confidence 22210 0 001 12467889999999999999999999999988 89999999
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCCCchhhHHHHHHHhhccCCcccccCChhhHHHH
Q 001481 437 VQFSRLTYTTTGSADNARDILIDGIKHVPNCKLLLEELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDI 516 (1071)
Q Consensus 437 ~~~A~~~~~~~g~~e~Ar~i~e~al~~~P~~~~lw~~~~~~e~~~g~~~~a~~~r~l~e~Al~~~~d~~~~l~~~~~~~l 516 (1071)
...|.++. ..|..++|...|..|+..+|+.+.....++.++...|+...+ ..|.++..|+..+| ...+.
T Consensus 688 ~~~G~~~~-~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la-~~~~~L~dalr~dp---------~n~ea 756 (799)
T KOG4162|consen 688 YLRGLLLE-VKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLA-EKRSLLSDALRLDP---------LNHEA 756 (799)
T ss_pred HHhhHHHH-HHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchH-HHHHHHHHHHhhCC---------CCHHH
Confidence 99999988 999999999999999999999999999999999999966544 35679999998777 34578
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCc
Q 001481 517 SSLYLQQFLDLCGTIHDIRNAWNQHIKLFPHTV 549 (1071)
Q Consensus 517 w~~~l~~~e~~~G~~e~a~~~~~ra~~~~p~~~ 549 (1071)
|.... ...+..|+.+.|-++|.-++++-+...
T Consensus 757 W~~LG-~v~k~~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 757 WYYLG-EVFKKLGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred HHHHH-HHHHHccchHHHHHHHHHHHhhccCCC
Confidence 99999 999999999999999999999876543
No 68
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.44 E-value=6.9e-11 Score=128.84 Aligned_cols=199 Identities=14% Similarity=0.016 Sum_probs=166.1
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHh
Q 001481 292 WHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQI 371 (1071)
Q Consensus 292 W~~y~~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~ 371 (1071)
...-+.....+|+++.|...|+.||..+..+.++.+..+..++..|++++|+++|-+.-.+ +.++..+....+.+++.+
T Consensus 493 ~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~l 571 (840)
T KOG2003|consen 493 LTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELL 571 (840)
T ss_pred hhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHh
Confidence 3333444445789999999999999998999999999999999999999999999887765 445667888889999999
Q ss_pred CCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhhcCCHH
Q 001481 372 GDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSAD 451 (1071)
Q Consensus 372 g~~~~A~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~g~~e 451 (1071)
.+...|+++|.++. .+.|+.+.++.++++++.+.|+-..|..++-..... +|.+-+..-.+|..|. ...-.+
T Consensus 572 ed~aqaie~~~q~~-slip~dp~ilskl~dlydqegdksqafq~~ydsyry------fp~nie~iewl~ayyi-dtqf~e 643 (840)
T KOG2003|consen 572 EDPAQAIELLMQAN-SLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY------FPCNIETIEWLAAYYI-DTQFSE 643 (840)
T ss_pred hCHHHHHHHHHHhc-ccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc------cCcchHHHHHHHHHHH-hhHHHH
Confidence 99999999999998 778999999999999999999999999999888777 7888887777777766 778889
Q ss_pred HHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCCCchhhHHHHHHHhhccCC
Q 001481 452 NARDILIDGIKHVPNCKLLLEELIKFTMVHGGRSHISIVDAVISNALYSRP 502 (1071)
Q Consensus 452 ~Ar~i~e~al~~~P~~~~lw~~~~~~e~~~g~~~~a~~~r~l~e~Al~~~~ 502 (1071)
+|+.+|++|--.-|+....-+..+...++.|++.++- .+|+..-.++|
T Consensus 644 kai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~---d~yk~~hrkfp 691 (840)
T KOG2003|consen 644 KAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAF---DLYKDIHRKFP 691 (840)
T ss_pred HHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHH---HHHHHHHHhCc
Confidence 9999999998777765543345557788889988764 77877766555
No 69
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=1.3e-10 Score=131.26 Aligned_cols=354 Identities=13% Similarity=0.034 Sum_probs=237.3
Q ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH-HHH-HCCCCHHHHHHHHHHHHHhCCHHHHHHHHH-HH
Q 001481 23 KQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDS-FLA-EFPLCYGYWRKYADHKARLCSIDKVVEVFE-RA 99 (1071)
Q Consensus 23 ~~~le~al~~nP~d~~~W~~li~~~~~~~~~~~~~a~~vyer-aL~-~~P~s~~lW~~~a~~e~~~~~~e~A~~lfe-rA 99 (1071)
.+.|.++|..+++.+++...++....-. ..+-..+++. -+. ..-..++....+.++......-+.....-+ ..
T Consensus 161 r~~Y~~Al~~D~~c~Ea~~~lvs~~mlt----~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~s 236 (611)
T KOG1173|consen 161 RDKYKEALLADAKCFEAFEKLVSAHMLT----AQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDES 236 (611)
T ss_pred HHHHHHHHhcchhhHHHHHHHHHHHhcc----hhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhh
Confidence 4578999999999999999998854422 1111222221 000 122233333333333211110011111111 34
Q ss_pred HHhcCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhc-cCCcc
Q 001481 100 VQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLR-FPSKK 178 (1071)
Q Consensus 100 L~~~P~s~~lW~~y~~~~~~~~~~~e~ar~l~erAL~~~~~~~~s~~lW~~yi~fe~~~~~~~~a~~iy~ral~-~p~~~ 178 (1071)
+...-.+.++-...++.+... +++.+..++++..+...|.+..... ..|--..+.++..++--+=.+.+. .|..-
T Consensus 237 l~~l~~~~dll~~~ad~~y~~-c~f~~c~kit~~lle~dpfh~~~~~---~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a 312 (611)
T KOG1173|consen 237 LIGLAENLDLLAEKADRLYYG-CRFKECLKITEELLEKDPFHLPCLP---LHIACLYELGKSNKLFLLSHKLVDLYPSKA 312 (611)
T ss_pred hhhhhhcHHHHHHHHHHHHHc-ChHHHHHHHhHHHHhhCCCCcchHH---HHHHHHHHhcccchHHHHHHHHHHhCCCCC
Confidence 444467888988888888888 8999999999999999888754333 333333334443333333233333 23221
Q ss_pred HHHHHHHHHHHHHhHHHhhhhhchhhHHHHHHHhhcCCccCCcccchhhHHHhhhcCcchhHHHHHHHHHHHHHHHHHHH
Q 001481 179 LHHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYK 258 (1071)
Q Consensus 179 l~~~~~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~i~~~~d~~~~~~~a~~l~~~~~~~~~~y~ 258 (1071)
..|-. ++ .+..++ +.+.
T Consensus 313 --~sW~a-----------Vg---------~YYl~i-----------------------------------------~k~s 329 (611)
T KOG1173|consen 313 --LSWFA-----------VG---------CYYLMI-----------------------------------------GKYS 329 (611)
T ss_pred --cchhh-----------HH---------HHHHHh-----------------------------------------cCcH
Confidence 00100 00 000000 1122
Q ss_pred HHHHHHHHHHHHHHHhcccCcCCCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCC
Q 001481 259 EASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGG 338 (1071)
Q Consensus 259 ~a~~~~~~~~~fE~ai~~~~~~~~~~~p~~~~~W~~y~~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~ 338 (1071)
+|+ ..|-++.. +++.-...|+.|+..+.-.|.-+.|+.+|-+|-...+....=.+-++.-+.+.++
T Consensus 330 eAR------ry~SKat~--------lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n 395 (611)
T KOG1173|consen 330 EAR------RYFSKATT--------LDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNN 395 (611)
T ss_pred HHH------HHHHHHhh--------cCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhcc
Confidence 222 22333321 4555567999999998888899999999999999888776666666777888899
Q ss_pred HHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhCCHHHHHHHHHHHhhcc---Ch---hhHHHHHHHHHHHHHcCCHHHH
Q 001481 339 REIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDS---DS---RFIEKVTFKANMERRLGNFVAA 412 (1071)
Q Consensus 339 ~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~~A~~~~~~al~~~---~p---~~~~~w~~~a~le~~~g~~~~A 412 (1071)
++.|...|..|+.+ .|.+|-+....+-+....+.+.+|..+|.+++..+ .+ .-..+|..+|..+++.+.+++|
T Consensus 396 ~kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eA 474 (611)
T KOG1173|consen 396 LKLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEA 474 (611)
T ss_pred HHHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHH
Confidence 99999999999998 88888777777777777889999999999998322 11 1245688999999999999999
Q ss_pred HHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCChHH
Q 001481 413 CDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKL 469 (1071)
Q Consensus 413 ~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~~~P~~~~ 469 (1071)
+..|++||.+ .+.++.++...|.++. ..|+++.|...|.++|.+.|++..
T Consensus 475 I~~~q~aL~l------~~k~~~~~asig~iy~-llgnld~Aid~fhKaL~l~p~n~~ 524 (611)
T KOG1173|consen 475 IDYYQKALLL------SPKDASTHASIGYIYH-LLGNLDKAIDHFHKALALKPDNIF 524 (611)
T ss_pred HHHHHHHHHc------CCCchhHHHHHHHHHH-HhcChHHHHHHHHHHHhcCCccHH
Confidence 9999999999 7899999999999998 999999999999999999998754
No 70
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=2e-10 Score=124.87 Aligned_cols=364 Identities=10% Similarity=0.011 Sum_probs=261.7
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHCCCCHHHHH--HHHHHHHHh-CCHHHHHHHHHHHHH
Q 001481 25 GLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWR--KYADHKARL-CSIDKVVEVFERAVQ 101 (1071)
Q Consensus 25 ~le~al~~nP~d~~~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P~s~~lW~--~~a~~e~~~-~~~e~A~~lferAL~ 101 (1071)
.+...|+.-|--...-..+++..-+. .. ....--.++...|....+|+ ....+...- ....-+..+|-.-+.
T Consensus 152 ~ykevvrecp~aL~~i~~ll~l~v~g--~e---~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~ 226 (564)
T KOG1174|consen 152 AYKEVIRECPMALQVIEALLELGVNG--NE---INSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNT 226 (564)
T ss_pred hhhHHHHhcchHHHHHHHHHHHhhcc--hh---hhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhc
Confidence 57777888887777766666654432 12 22333444555666655543 322222221 234455667777777
Q ss_pred hcCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhccCCccHHH
Q 001481 102 SATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHH 181 (1071)
Q Consensus 102 ~~P~s~~lW~~y~~~~~~~~~~~e~ar~l~erAL~~~~~~~~s~~lW~~yi~fe~~~~~~~~a~~iy~ral~~p~~~l~~ 181 (1071)
.+|.+++|....++.+... |+.+.+...|++++...|... .--+.|+-+....|..+.+.++..+.+.+.......
T Consensus 227 ~lr~NvhLl~~lak~~~~~-Gdn~~a~~~Fe~~~~~dpy~i---~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~ 302 (564)
T KOG1174|consen 227 TLRCNEHLMMALGKCLYYN-GDYFQAEDIFSSTLCANPDNV---EAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASH 302 (564)
T ss_pred cCCccHHHHHHHhhhhhhh-cCchHHHHHHHHHhhCChhhh---hhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhh
Confidence 8899999999999998888 999999999999988766543 344667777777888888888877776542111010
Q ss_pred HHHHHHHHHHhHHHhhhhhchhhHHHHHHHhhcCCccCCcccchhhHHHhhhcCcchhHHHHHHHHHHHHHHHHHHHHHH
Q 001481 182 YYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEAS 261 (1071)
Q Consensus 182 ~~~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~i~~~~d~~~~~~~a~~l~~~~~~~~~~y~~a~ 261 (1071)
+|. .+.+ .|+ ++.|.+|
T Consensus 303 wfV-----------------------------~~~~--l~~-------------------------------~K~~~rA- 319 (564)
T KOG1174|consen 303 WFV-----------------------------HAQL--LYD-------------------------------EKKFERA- 319 (564)
T ss_pred hhh-----------------------------hhhh--hhh-------------------------------hhhHHHH-
Confidence 000 0000 000 0112222
Q ss_pred HHHHHHHHHHHHhcccCcCCCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCHHH
Q 001481 262 QLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREI 341 (1071)
Q Consensus 262 ~~~~~~~~fE~ai~~~~~~~~~~~p~~~~~W~~y~~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~ 341 (1071)
+-.-|++|+ .++.+...++..+..+...|+...|+-.|+.|...-|...++|-.+...|...|++.+
T Consensus 320 -----L~~~eK~I~--------~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kE 386 (564)
T KOG1174|consen 320 -----LNFVEKCID--------SEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKE 386 (564)
T ss_pred -----HHHHHHHhc--------cCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHH
Confidence 222344554 5778888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccchHHHHHHH-HHHHH-hCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001481 342 ASYALDRATQIFLKRLPVIHLFNA-RYKEQ-IGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEA 419 (1071)
Q Consensus 342 A~~il~rAl~~~~~~~p~i~~~~a-~~e~~-~g~~~~A~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~~y~~A 419 (1071)
|....+.+++. .+.+....-..+ .+... -.--++|.++|++++ .+.|++..+....+.+.-+-|..+.++++++++
T Consensus 387 A~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L-~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~ 464 (564)
T KOG1174|consen 387 ANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL-KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKH 464 (564)
T ss_pred HHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhh-ccCCccHHHHHHHHHHHHhhCccchHHHHHHHH
Confidence 99999888886 444443333332 22211 122378999999999 889999999999999999999999999999999
Q ss_pred HHHHhhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCC
Q 001481 420 LETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLLLEELIKFTMVHGG 483 (1071)
Q Consensus 420 l~~~~~~~~~p~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~~~P~~~~lw~~~~~~e~~~g~ 483 (1071)
+.. ..+..++..+|.++. ..+.+.+|...|..||+.+|.+......+-.+|+...+
T Consensus 465 L~~-------~~D~~LH~~Lgd~~~-A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK~~~~ 520 (564)
T KOG1174|consen 465 LII-------FPDVNLHNHLGDIMR-AQNEPQKAMEYYYKALRQDPKSKRTLRGLRLLEKSDDE 520 (564)
T ss_pred Hhh-------ccccHHHHHHHHHHH-HhhhHHHHHHHHHHHHhcCccchHHHHHHHHHHhccCC
Confidence 987 345678999999998 99999999999999999999999888877777766543
No 71
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.43 E-value=3.5e-11 Score=134.95 Aligned_cols=200 Identities=12% Similarity=0.018 Sum_probs=157.2
Q ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhccchHHHHHHHH
Q 001481 287 IQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNAR 366 (1071)
Q Consensus 287 ~~~~~W~~y~~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~ 366 (1071)
.....|...+..+...|+.+.|+..|++|+...|++..+|+.++.++...|++++|+..|++|+++ .|+.+..|+..+.
T Consensus 62 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l-~P~~~~a~~~lg~ 140 (296)
T PRK11189 62 ERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL-DPTYNYAYLNRGI 140 (296)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHH
Confidence 446889999999999999999999999999999999999999999999999999999999999997 7777889999999
Q ss_pred HHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhh
Q 001481 367 YKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTT 446 (1071)
Q Consensus 367 ~e~~~g~~~~A~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~ 446 (1071)
++...|++++|...|++++ ..+|++.. ...|..+....+++++|...|++++... .+ ..|. ++.+.. .
T Consensus 141 ~l~~~g~~~eA~~~~~~al-~~~P~~~~-~~~~~~l~~~~~~~~~A~~~l~~~~~~~-----~~---~~~~-~~~~~~-~ 208 (296)
T PRK11189 141 ALYYGGRYELAQDDLLAFY-QDDPNDPY-RALWLYLAESKLDPKQAKENLKQRYEKL-----DK---EQWG-WNIVEF-Y 208 (296)
T ss_pred HHHHCCCHHHHHHHHHHHH-HhCCCCHH-HHHHHHHHHccCCHHHHHHHHHHHHhhC-----Cc---cccH-HHHHHH-H
Confidence 9999999999999999999 67777652 1222333455688999999998877542 11 2222 333333 4
Q ss_pred cCCHHHH--HHHHHHH----HhhCCChHHHHHHHHHHHHHcCCCCchhhHHHHHHHhhccCC
Q 001481 447 TGSADNA--RDILIDG----IKHVPNCKLLLEELIKFTMVHGGRSHISIVDAVISNALYSRP 502 (1071)
Q Consensus 447 ~g~~e~A--r~i~e~a----l~~~P~~~~lw~~~~~~e~~~g~~~~a~~~r~l~e~Al~~~~ 502 (1071)
.|++..+ .+.+.++ ++..|...+.|..++.++...|+.+++. ..|++|+..+|
T Consensus 209 lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~---~~~~~Al~~~~ 267 (296)
T PRK11189 209 LGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAA---ALFKLALANNV 267 (296)
T ss_pred ccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHH---HHHHHHHHhCC
Confidence 5555433 3333332 3445566788999999999999998875 99999997654
No 72
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=6.9e-10 Score=125.35 Aligned_cols=425 Identities=11% Similarity=0.076 Sum_probs=252.6
Q ss_pred chHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 001481 22 GKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQ 101 (1071)
Q Consensus 22 ~~~~le~al~~nP~d~~~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P~s~~lW~~~a~~e~~~~~~e~A~~lferAL~ 101 (1071)
.+..|-++|..+|.|--++..-...+-+. +++++|..--.+.++..|.-.+.|...+....-.|+|++|+..|.++|+
T Consensus 21 ai~~~t~ai~l~p~nhvlySnrsaa~a~~--~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~ 98 (539)
T KOG0548|consen 21 AIRLFTEAIMLSPTNHVLYSNRSAAYASL--GSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILAYSEGLE 98 (539)
T ss_pred HHHHHHHHHccCCCccchhcchHHHHHHH--hhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHHHHHHhh
Confidence 35689999999999888887777767666 8999999999999999999999999999999999999999999999999
Q ss_pred hcCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHccC--HHHHHHHHHHHhccCCccH
Q 001481 102 SATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQR--WSSLAQIFVQTLRFPSKKL 179 (1071)
Q Consensus 102 ~~P~s~~lW~~y~~~~~~~~~~~e~ar~l~erAL~~~~~~~~s~~lW~~yi~fe~~~~~--~~~a~~iy~ral~~p~~~l 179 (1071)
.+|.+.-|...+....... .. + +.-+....+|............ .....++....-..|.. +
T Consensus 99 ~d~~n~~L~~gl~~a~~~~---~~--------~----~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~-l 162 (539)
T KOG0548|consen 99 KDPSNKQLKTGLAQAYLED---YA--------A----DQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTS-L 162 (539)
T ss_pred cCCchHHHHHhHHHhhhHH---HH--------h----hhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHh-h
Confidence 9999988887766654111 10 0 1223355677666654433211 11122222211112211 1
Q ss_pred HHH--HHHHHHHHHhHHHhhhhhchhhHHHHHHHhhcCCccC-Ccccc-----hhhHHHhhhcCcchhHHHHHHHHHHHH
Q 001481 180 HHY--YDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPA-YYKDD-----ETSSVIKDLLDPSVDLVRSKAIQKYRF 251 (1071)
Q Consensus 180 ~~~--~~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~l~~-~~~~~-----e~~~~i~~~~d~~~~~~~a~~l~~~~~ 251 (1071)
..+ ..........+. .. ... .....+.... ..... +...++++..+.....+.+.... -
T Consensus 163 ~~~l~d~r~m~a~~~l~---~~------~~~-~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek---~ 229 (539)
T KOG0548|consen 163 KLYLNDPRLMKADGQLK---GV------DEL-LFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEK---E 229 (539)
T ss_pred hcccccHHHHHHHHHHh---cC------ccc-cccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHH---H
Confidence 110 011111111100 00 000 0000000000 00000 00000111110000000000000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCcCCCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 001481 252 IGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVD 331 (1071)
Q Consensus 252 ~~~~~y~~a~~~~~~~~~fE~ai~~~~~~~~~~~p~~~~~W~~y~~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~ 331 (1071)
+....|. .+........|..++. ++ .........+..+.+.|.+.+.+.+.+.+++.....-.-+..+++
T Consensus 230 lgnaayk-kk~f~~a~q~y~~a~e--------l~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak 299 (539)
T KOG0548|consen 230 LGNAAYK-KKDFETAIQHYAKALE--------LA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAK 299 (539)
T ss_pred HHHHHHH-hhhHHHHHHHHHHHHh--------Hh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHH
Confidence 0111111 1122233334444443 23 444455566666666777777777777776543322222222233
Q ss_pred -------HHHhhCCHHHHHHHHHHHHHHhhc-cc---------------------hHH---HHHHHHHHHHhCCHHHHHH
Q 001481 332 -------FMESKGGREIASYALDRATQIFLK-RL---------------------PVI---HLFNARYKEQIGDTSAARA 379 (1071)
Q Consensus 332 -------~l~~~g~~e~A~~il~rAl~~~~~-~~---------------------p~i---~~~~a~~e~~~g~~~~A~~ 379 (1071)
.+...++++.|+..|.+++..+.. .+ |.. -..-+.-....|+|..|..
T Consensus 300 ~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~ 379 (539)
T KOG0548|consen 300 ALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVK 379 (539)
T ss_pred HHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHH
Confidence 333345577888888888764221 00 000 0011222356789999999
Q ss_pred HHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 001481 380 AFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILID 459 (1071)
Q Consensus 380 ~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~ 459 (1071)
.|.+|| ..+|++..+|.+.+-++.++|.+..|.+-.++++++ +|...+.|+.-|.++. ...++++|.++|.+
T Consensus 380 ~YteAI-kr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL------~p~~~kgy~RKg~al~-~mk~ydkAleay~e 451 (539)
T KOG0548|consen 380 HYTEAI-KRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIEL------DPNFIKAYLRKGAALR-AMKEYDKALEAYQE 451 (539)
T ss_pred HHHHHH-hcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc------CchHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 999999 678999999999999999999999999999999999 8999999999999998 99999999999999
Q ss_pred HHhhCCChHHHHHHHHHHHHHcCCCCchhhHHHHHHHhh
Q 001481 460 GIKHVPNCKLLLEELIKFTMVHGGRSHISIVDAVISNAL 498 (1071)
Q Consensus 460 al~~~P~~~~lw~~~~~~e~~~g~~~~a~~~r~l~e~Al 498 (1071)
|++.+|.+.++...|.+...........+ .+.+++.
T Consensus 452 ale~dp~~~e~~~~~~rc~~a~~~~~~~e---e~~~r~~ 487 (539)
T KOG0548|consen 452 ALELDPSNAEAIDGYRRCVEAQRGDETPE---ETKRRAM 487 (539)
T ss_pred HHhcCchhHHHHHHHHHHHHHhhcCCCHH---HHHHhhc
Confidence 99999999998888887766532222222 5666654
No 73
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.42 E-value=8.3e-10 Score=129.74 Aligned_cols=405 Identities=11% Similarity=0.111 Sum_probs=256.7
Q ss_pred cHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhC--CChhHHHHHH
Q 001481 54 DIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTF--EDPNDVRRLF 131 (1071)
Q Consensus 54 ~~~~a~~vyeraL~~~P~s~~lW~~~a~~e~~~~~~e~A~~lferAL~~~P~s~~lW~~y~~~~~~~~--~~~e~ar~l~ 131 (1071)
..+.-...++.-+.++++++..-..|+.+..+.|++++.+..-..+.+..|.+..+|+.|+.-+.... ++.+.+..+|
T Consensus 94 ~~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ 173 (881)
T KOG0128|consen 94 GGNQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELF 173 (881)
T ss_pred cchhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHH
Confidence 33444556777777888888888888888999999999999999999999999999999998765442 6778889999
Q ss_pred HHHHHhcCCCCCchHHHHHHHHHHHHc-------cCHHHHHHHHHHHhcc---CCccHHHHHHHHHHHHHhHHHhhhhhc
Q 001481 132 KRALSFVGKDYLCHTMWDKYIEFEISQ-------QRWSSLAQIFVQTLRF---PSKKLHHYYDSFKKLAGAWKEELECES 201 (1071)
Q Consensus 132 erAL~~~~~~~~s~~lW~~yi~fe~~~-------~~~~~a~~iy~ral~~---p~~~l~~~~~~~~~~~~~~~e~l~~~~ 201 (1071)
++||. ++.+..||..|+.|.... +.++..|.+|.|+|.. ....-..+|..|.++...+-....
T Consensus 174 ekal~----dy~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~--- 246 (881)
T KOG0128|consen 174 EKALG----DYNSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVE--- 246 (881)
T ss_pred HHHhc----ccccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHH---
Confidence 99985 456789999999998764 4578899999999852 223445566666666554321110
Q ss_pred hhhHHHHHHHhhcCCccCCcccchhhHHHhhhcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCC
Q 001481 202 DSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHV 281 (1071)
Q Consensus 202 ~~~~~~~~~~~~~~~l~~~~~~~e~~~~i~~~~d~~~~~~~a~~l~~~~~~~~~~y~~a~~~~~~~~~fE~ai~~~~~~~ 281 (1071)
.+.+..+.... +...+ +... ....++...+ -..+...+.
T Consensus 247 ---~~qv~a~~~~e-l~~~~---D~~~-----------------------~~~~~~~~sk-----~h~~~~~~~------ 285 (881)
T KOG0128|consen 247 ---QRQVIALFVRE-LKQPL---DEDT-----------------------RGWDLSEQSK-----AHVYDVETK------ 285 (881)
T ss_pred ---HHHHHHHHHHH-Hhccc---hhhh-----------------------hHHHHHHHHh-----cchHHHHhc------
Confidence 00011110000 00000 0000 0000000000 000000000
Q ss_pred CCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhccchHHH
Q 001481 282 KPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIH 361 (1071)
Q Consensus 282 ~~~~p~~~~~W~~y~~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~ 361 (1071)
+ + ..........+..|++.+...+.....|+.|++|....|..-....+++|++.- ....+..|
T Consensus 286 ---~---------~---~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E-~~~~~~~w 349 (881)
T KOG0128|consen 286 ---K---------L---DDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAE-MVLDRALW 349 (881)
T ss_pred ---c---------H---HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHh-ccccHHHH
Confidence 0 0 000112234566777778778888899999999999999988888899999875 44457899
Q ss_pred HHHHHHHHH-hCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHH
Q 001481 362 LFNARYKEQ-IGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRL-GNFVAACDTYKEALETAAEQRKFHTLPLLYVQF 439 (1071)
Q Consensus 362 ~~~a~~e~~-~g~~~~A~~~~~~al~~~~p~~~~~w~~~a~le~~~-g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~ 439 (1071)
+.|+-+... ++-...+...+.+++ ..+|-...+|-++...+.|. .........+++++... ..++..+
T Consensus 350 i~y~~~~d~eLkv~~~~~~~~~ra~-R~cp~tgdL~~rallAleR~re~~~vI~~~l~~~ls~~---------~~l~~~~ 419 (881)
T KOG0128|consen 350 IGYGVYLDTELKVPQRGVSVHPRAV-RSCPWTGDLWKRALLALERNREEITVIVQNLEKDLSMT---------VELHNDY 419 (881)
T ss_pred hhhhhhcccccccccccccccchhh-cCCchHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHH---------HHHHHHH
Confidence 998877543 444556778888888 66788888888877544444 34555666777776651 1133322
Q ss_pred HHHHHhhc------CCHHHHHHHHHHHHhhCC----C----hHHHHHHHHHHHHHcC-CCCchhhHHHHHHHhhccCCcc
Q 001481 440 SRLTYTTT------GSADNARDILIDGIKHVP----N----CKLLLEELIKFTMVHG-GRSHISIVDAVISNALYSRPDV 504 (1071)
Q Consensus 440 A~~~~~~~------g~~e~Ar~i~e~al~~~P----~----~~~lw~~~~~~e~~~g-~~~~a~~~r~l~e~Al~~~~d~ 504 (1071)
..+.. .+ .+++.-|+.|..|....- . ...+...|+.+|...+ +.+.+ |.+....+...
T Consensus 420 ~~~rr-~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~---R~iWn~imty~--- 492 (881)
T KOG0128|consen 420 LAYRR-RCTNIIDSQDYSSLRAAFNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKA---REIWNFIMTYG--- 492 (881)
T ss_pred HHHHH-hhcccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhh---hHhhhccccCC---
Confidence 22221 23 345666777777765422 1 2346677888887664 44444 46666554321
Q ss_pred cccCChhhHHH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 001481 505 LKVFSLEDVED-ISSLYLQQFLDLCGTIHDIRNAWNQHIKLFP 546 (1071)
Q Consensus 505 ~~~l~~~~~~~-lw~~~l~~~e~~~G~~e~a~~~~~ra~~~~p 546 (1071)
.-... .|..|+ ++|..+|+...+++++++|.--.-
T Consensus 493 ------~~~iag~Wle~~-~lE~~~g~~~~~R~~~R~ay~~~~ 528 (881)
T KOG0128|consen 493 ------GGSIAGKWLEAI-NLEREYGDGPSARKVLRKAYSQVV 528 (881)
T ss_pred ------cchHHHHHHHHH-hHHHHhCCchhHHHHHHHHHhcCc
Confidence 11223 899999 999999999999997777766553
No 74
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.39 E-value=2.9e-11 Score=135.55 Aligned_cols=224 Identities=11% Similarity=0.045 Sum_probs=169.7
Q ss_pred CHHHHHHHHHHhhcCCC----CCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhCCHHHHHH
Q 001481 304 DFDWVVKLYERCLIPCA----DYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARA 379 (1071)
Q Consensus 304 ~~~~a~~~yerAL~~~p----~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~~A~~ 379 (1071)
..+.++..+.++|...+ .....|+..+..+...|+.++|+..|++|+++ .|+.+.+|...+.++...|++++|..
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l-~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALAL-RPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 44566777777775333 44688999999999999999999999999997 78888999999999999999999999
Q ss_pred HHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 001481 380 AFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILID 459 (1071)
Q Consensus 380 ~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~ 459 (1071)
.|++++ +++|++..+|..++.++...|++++|+..|+++++. .|.++.. ..|..+.. ..++.++|...|++
T Consensus 120 ~~~~Al-~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~------~P~~~~~-~~~~~l~~-~~~~~~~A~~~l~~ 190 (296)
T PRK11189 120 AFDSVL-ELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD------DPNDPYR-ALWLYLAE-SKLDPKQAKENLKQ 190 (296)
T ss_pred HHHHHH-HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHHH-HHHHHHHH-ccCCHHHHHHHHHH
Confidence 999999 789999999999999999999999999999999998 6766632 22333334 67899999999988
Q ss_pred HHhhCCChHHHHHHHHHHHHHcCCCCchhhHHHHHHHhhccCCcccccCChhhHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 001481 460 GIKHVPNCKLLLEELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQQFLDLCGTIHDIRNAWN 539 (1071)
Q Consensus 460 al~~~P~~~~lw~~~~~~e~~~g~~~~a~~~r~l~e~Al~~~~d~~~~l~~~~~~~lw~~~l~~~e~~~G~~e~a~~~~~ 539 (1071)
++...+. ..|. +.......|+..... +...+.+++...+ .+.+ ...+.|.... ......|+.++|..+|+
T Consensus 191 ~~~~~~~--~~~~-~~~~~~~lg~~~~~~-~~~~~~~~~~~~~----~l~~-~~~ea~~~Lg-~~~~~~g~~~~A~~~~~ 260 (296)
T PRK11189 191 RYEKLDK--EQWG-WNIVEFYLGKISEET-LMERLKAGATDNT----ELAE-RLCETYFYLA-KYYLSLGDLDEAAALFK 260 (296)
T ss_pred HHhhCCc--cccH-HHHHHHHccCCCHHH-HHHHHHhcCCCcH----HHHH-HHHHHHHHHH-HHHHHCCCHHHHHHHHH
Confidence 8765433 2343 334444566665431 1222333322211 1111 1234677777 88889999999999999
Q ss_pred HHHHhCCC
Q 001481 540 QHIKLFPH 547 (1071)
Q Consensus 540 ra~~~~p~ 547 (1071)
++++..|.
T Consensus 261 ~Al~~~~~ 268 (296)
T PRK11189 261 LALANNVY 268 (296)
T ss_pred HHHHhCCc
Confidence 99999875
No 75
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.38 E-value=4.2e-10 Score=131.71 Aligned_cols=288 Identities=9% Similarity=-0.037 Sum_probs=213.8
Q ss_pred chHHHHHHHHhCCCC----HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHhCCHHHHHHHH
Q 001481 22 GKQGLEEFIAEGSLD----FDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCY-GYWRKYADHKARLCSIDKVVEVF 96 (1071)
Q Consensus 22 ~~~~le~al~~nP~d----~~~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P~s~-~lW~~~a~~e~~~~~~e~A~~lf 96 (1071)
+++..++.+..+|.+ .-.++..+...... |+++++...|+++.+..|++. ......+++....|+++.|...+
T Consensus 99 d~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~--g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l 176 (398)
T PRK10747 99 DYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQR--GDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGV 176 (398)
T ss_pred CHHHHHHHHHHHHhcccchHHHHHHHHHHHHHC--CCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 345667777777765 33444445554566 999999999999999999985 44455588999999999999999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhccCC
Q 001481 97 ERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPS 176 (1071)
Q Consensus 97 erAL~~~P~s~~lW~~y~~~~~~~~~~~e~ar~l~erAL~~~~~~~~s~~lW~~yi~fe~~~~~~~~a~~iy~ral~~p~ 176 (1071)
+++++..|.+.......+..+... ++++++..++++..+....+. +....+..++..
T Consensus 177 ~~~~~~~P~~~~al~ll~~~~~~~-gdw~~a~~~l~~l~k~~~~~~-------------------~~~~~l~~~a~~--- 233 (398)
T PRK10747 177 DKLLEVAPRHPEVLRLAEQAYIRT-GAWSSLLDILPSMAKAHVGDE-------------------EHRAMLEQQAWI--- 233 (398)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHcCCCCH-------------------HHHHHHHHHHHH---
Confidence 999999999999999999999988 999999999999888654321 111111111100
Q ss_pred ccHHHHHHHHHHHHHhHHHhhhhhchhhHHHHHHHhhcCCccCCcccchhhHHHhhhcCcchhHHHHHHHHHHHHHHHHH
Q 001481 177 KKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQI 256 (1071)
Q Consensus 177 ~~l~~~~~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~i~~~~d~~~~~~~a~~l~~~~~~~~~~ 256 (1071)
...... .. ..+.. .+..
T Consensus 234 -----------~l~~~~---~~------------------------~~~~~-----------------~l~~-------- 250 (398)
T PRK10747 234 -----------GLMDQA---MA------------------------DQGSE-----------------GLKR-------- 250 (398)
T ss_pred -----------HHHHHH---HH------------------------hcCHH-----------------HHHH--------
Confidence 000000 00 00000 0000
Q ss_pred HHHHHHHHHHHHHHHHHhcccCcCCCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhh
Q 001481 257 YKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESK 336 (1071)
Q Consensus 257 y~~a~~~~~~~~~fE~ai~~~~~~~~~~~p~~~~~W~~y~~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~ 336 (1071)
.+.. + ....+++..++..|+..+...|+.+.|..++++++. .+.++.+...|+.+. .
T Consensus 251 ------~w~~-------l-------p~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~-~~~~~~l~~l~~~l~--~ 307 (398)
T PRK10747 251 ------WWKN-------Q-------SRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK-RQYDERLVLLIPRLK--T 307 (398)
T ss_pred ------HHHh-------C-------CHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-cCCCHHHHHHHhhcc--C
Confidence 0000 0 001234567888899999999999999999999999 566778887777753 4
Q ss_pred CCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHH
Q 001481 337 GGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTY 416 (1071)
Q Consensus 337 g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~~A~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~~y 416 (1071)
++.++++..+++.++. .|+++.+++.+++++...+++++|++.|++++ ...|+. ..+..++.++.+.|+.++|..+|
T Consensus 308 ~~~~~al~~~e~~lk~-~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al-~~~P~~-~~~~~La~~~~~~g~~~~A~~~~ 384 (398)
T PRK10747 308 NNPEQLEKVLRQQIKQ-HGDTPLLWSTLGQLLMKHGEWQEASLAFRAAL-KQRPDA-YDYAWLADALDRLHKPEEAAAMR 384 (398)
T ss_pred CChHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-hcCCCH-HHHHHHHHHHHHcCCHHHHHHHH
Confidence 8899999999999986 78899999999999999999999999999999 667764 45778999999999999999999
Q ss_pred HHHHHHH
Q 001481 417 KEALETA 423 (1071)
Q Consensus 417 ~~Al~~~ 423 (1071)
++++.+.
T Consensus 385 ~~~l~~~ 391 (398)
T PRK10747 385 RDGLMLT 391 (398)
T ss_pred HHHHhhh
Confidence 9999873
No 76
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=7.2e-09 Score=112.95 Aligned_cols=259 Identities=11% Similarity=0.094 Sum_probs=198.2
Q ss_pred HHHHHHHHHHHHhcccCcCCCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCHHH
Q 001481 262 QLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREI 341 (1071)
Q Consensus 262 ~~~~~~~~fE~ai~~~~~~~~~~~p~~~~~W~~y~~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~ 341 (1071)
+.......||...- ++|..+...-.|+-++...|++++...+-.+.+........-|+--+..++...+++.
T Consensus 247 dn~~a~~~Fe~~~~--------~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~r 318 (564)
T KOG1174|consen 247 DYFQAEDIFSSTLC--------ANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFER 318 (564)
T ss_pred CchHHHHHHHHHhh--------CChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHH
Confidence 33445555665542 5777777788888888888888888888888887776777788888888888888888
Q ss_pred HHHHHHHHHHHhhccchHHHHHHHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001481 342 ASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALE 421 (1071)
Q Consensus 342 A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~~A~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~ 421 (1071)
|...-++++.. .++.-..++.-+.++...++.++|.-.|+.|. .+.|...+.|-.+...+.-.|.+.+|.-.-..+++
T Consensus 319 AL~~~eK~I~~-~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq-~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~ 396 (564)
T KOG1174|consen 319 ALNFVEKCIDS-EPRNHEALILKGRLLIALERHTQAVIAFRTAQ-MLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIR 396 (564)
T ss_pred HHHHHHHHhcc-CcccchHHHhccHHHHhccchHHHHHHHHHHH-hcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Confidence 88888888876 44443466777888888888888888888887 67787788888888887778888888888888888
Q ss_pred HHhhhccCCCcHHHHHHHH-HHHHhhcCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCCCchhhHHHHHHHhhcc
Q 001481 422 TAAEQRKFHTLPLLYVQFS-RLTYTTTGSADNARDILIDGIKHVPNCKLLLEELIKFTMVHGGRSHISIVDAVISNALYS 500 (1071)
Q Consensus 422 ~~~~~~~~p~~~~l~~~~A-~~~~~~~g~~e~Ar~i~e~al~~~P~~~~lw~~~~~~e~~~g~~~~a~~~r~l~e~Al~~ 500 (1071)
. .+.+++..--+| .+....-..-++|.+.|+++|+..|.........+++....|..+++. ++++++|..
T Consensus 397 ~------~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i---~LLe~~L~~ 467 (564)
T KOG1174|consen 397 L------FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDII---KLLEKHLII 467 (564)
T ss_pred H------hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHH---HHHHHHHhh
Confidence 7 566676666664 333323445688999999999999998888888888888888777765 888998876
Q ss_pred CCcccccCChhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcc
Q 001481 501 RPDVLKVFSLEDVEDISSLYLQQFLDLCGTIHDIRNAWNQHIKLFPHTVR 550 (1071)
Q Consensus 501 ~~d~~~~l~~~~~~~lw~~~l~~~e~~~G~~e~a~~~~~ra~~~~p~~~~ 550 (1071)
.+|. .|..... +|......+.++++.|..|+...|.+.+
T Consensus 468 ~~D~----------~LH~~Lg-d~~~A~Ne~Q~am~~y~~ALr~dP~~~~ 506 (564)
T KOG1174|consen 468 FPDV----------NLHNHLG-DIMRAQNEPQKAMEYYYKALRQDPKSKR 506 (564)
T ss_pred cccc----------HHHHHHH-HHHHHhhhHHHHHHHHHHHHhcCccchH
Confidence 5542 4566666 7888888888899999999998888543
No 77
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.34 E-value=7.7e-09 Score=121.09 Aligned_cols=132 Identities=17% Similarity=0.096 Sum_probs=118.5
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHH
Q 001481 359 VIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQ 438 (1071)
Q Consensus 359 ~i~~~~a~~e~~~g~~~~A~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~ 438 (1071)
.+|+..+.+..+.++.++|+.++..+. .++|-.+.+|+..+.+....|..++|...|..|+.+ +|........
T Consensus 651 ~lwllaa~~~~~~~~~~~a~~CL~Ea~-~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l------dP~hv~s~~A 723 (799)
T KOG4162|consen 651 KLWLLAADLFLLSGNDDEARSCLLEAS-KIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL------DPDHVPSMTA 723 (799)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHH-hcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc------CCCCcHHHHH
Confidence 478888888889999999999999887 678888999999999999999999999999999999 8999999999
Q ss_pred HHHHHHhhcCCHHHHHH--HHHHHHhhCCChHHHHHHHHHHHHHcCCCCchhhHHHHHHHhhccC
Q 001481 439 FSRLTYTTTGSADNARD--ILIDGIKHVPNCKLLLEELIKFTMVHGGRSHISIVDAVISNALYSR 501 (1071)
Q Consensus 439 ~A~~~~~~~g~~e~Ar~--i~e~al~~~P~~~~lw~~~~~~e~~~g~~~~a~~~r~l~e~Al~~~ 501 (1071)
+|.++. +.|+..-|.+ ++..+++.+|.+.+.|..++...+..|+.+.+- .+|..|+...
T Consensus 724 la~~ll-e~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aa---ecf~aa~qLe 784 (799)
T KOG4162|consen 724 LAELLL-ELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAA---ECFQAALQLE 784 (799)
T ss_pred HHHHHH-HhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHH---HHHHHHHhhc
Confidence 999998 8887655555 999999999999999999999999999998774 8999998653
No 78
>PLN02789 farnesyltranstransferase
Probab=99.32 E-value=5.1e-10 Score=125.55 Aligned_cols=205 Identities=12% Similarity=-0.001 Sum_probs=166.5
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhC-CHHHHHHHHHHHHHHhhccchHHHHHHHH
Q 001481 288 QLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKG-GREIASYALDRATQIFLKRLPVIHLFNAR 366 (1071)
Q Consensus 288 ~~~~W~~y~~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g-~~e~A~~il~rAl~~~~~~~p~i~~~~a~ 366 (1071)
..++|--+-..+...+..++|..+++++|..+|.+..+|...+.++...| .+++++..+++++.. .|++..+|...+.
T Consensus 36 ~~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~-npknyqaW~~R~~ 114 (320)
T PLN02789 36 FREAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED-NPKNYQIWHHRRW 114 (320)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH-CCcchHHhHHHHH
Confidence 33444444445556788999999999999999999999999999999988 579999999999987 6677778988888
Q ss_pred HHHHhCCH--HHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHH
Q 001481 367 YKEQIGDT--SAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTY 444 (1071)
Q Consensus 367 ~e~~~g~~--~~A~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~ 444 (1071)
+....|+. +++..++.+++ +.+|++..+|...+.+....|.++++++.|+++|+. ++.+..+|...+.++.
T Consensus 115 ~l~~l~~~~~~~el~~~~kal-~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~------d~~N~sAW~~R~~vl~ 187 (320)
T PLN02789 115 LAEKLGPDAANKELEFTRKIL-SLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE------DVRNNSAWNQRYFVIT 187 (320)
T ss_pred HHHHcCchhhHHHHHHHHHHH-HhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH------CCCchhHHHHHHHHHH
Confidence 88887763 78899999999 789999999999999999999999999999999999 8889999999988875
Q ss_pred hhc---CCH----HHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCC-CchhhHHHHHHHhhccC
Q 001481 445 TTT---GSA----DNARDILIDGIKHVPNCKLLLEELIKFTMVHGGR-SHISIVDAVISNALYSR 501 (1071)
Q Consensus 445 ~~~---g~~----e~Ar~i~e~al~~~P~~~~lw~~~~~~e~~~g~~-~~a~~~r~l~e~Al~~~ 501 (1071)
.. |++ +++.++..++|..+|++...|..+..++...+.. -....+...+.+++...
T Consensus 188 -~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~ 251 (320)
T PLN02789 188 -RSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD 251 (320)
T ss_pred -hccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc
Confidence 43 333 5788888999999999999999888887763321 11111335667766543
No 79
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.28 E-value=9.9e-08 Score=109.98 Aligned_cols=100 Identities=16% Similarity=0.088 Sum_probs=83.6
Q ss_pred hhhHHHHHHHHH--HHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCh
Q 001481 390 SRFIEKVTFKAN--MERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNC 467 (1071)
Q Consensus 390 p~~~~~w~~~a~--le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~~~P~~ 467 (1071)
|-..-+|..+.- -..+.|+++.|....+.||+. .|+..++|+..|+++- ..|++++|..+++.|.+.+-.+
T Consensus 366 ~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH------TPTliEly~~KaRI~k-H~G~l~eAa~~l~ea~elD~aD 438 (700)
T KOG1156|consen 366 PPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH------TPTLIELYLVKARIFK-HAGLLDEAAAWLDEAQELDTAD 438 (700)
T ss_pred CchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc------CchHHHHHHHHHHHHH-hcCChHHHHHHHHHHHhccchh
Confidence 445667776643 456789999999999999998 7999999999999987 9999999999999999888777
Q ss_pred HHHHHHHHHHHHHcCCCCchhhHHHHHHH
Q 001481 468 KLLLEELIKFTMVHGGRSHISIVDAVISN 496 (1071)
Q Consensus 468 ~~lw~~~~~~e~~~g~~~~a~~~r~l~e~ 496 (1071)
..+=..+++.....+..+.|..+.+.|.|
T Consensus 439 R~INsKcAKYmLrAn~i~eA~~~~skFTr 467 (700)
T KOG1156|consen 439 RAINSKCAKYMLRANEIEEAEEVLSKFTR 467 (700)
T ss_pred HHHHHHHHHHHHHccccHHHHHHHHHhhh
Confidence 77766888888888888888777777766
No 80
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.27 E-value=1.1e-09 Score=128.16 Aligned_cols=255 Identities=13% Similarity=0.049 Sum_probs=194.0
Q ss_pred CChhHHHHHHHHHHHHHHhCCHHHHHHHHHHhhcC--------CCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhh-
Q 001481 284 LDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIP--------CADYPEFWMRYVDFMESKGGREIASYALDRATQIFL- 354 (1071)
Q Consensus 284 ~~p~~~~~W~~y~~~~~~~g~~~~a~~~yerAL~~--------~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~- 354 (1071)
..|....+...++..+...|+++.|..+|++|+.. ++.-...-..+|.+|...+++++|..+|++|+.+..
T Consensus 194 ~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~ 273 (508)
T KOG1840|consen 194 EDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREE 273 (508)
T ss_pred CCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 45666777777888899999999999999999975 555566666799999999999999999999999854
Q ss_pred ---ccch---HHHHHHHHHHHHhCCHHHHHHHHHHHhhc-------cChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001481 355 ---KRLP---VIHLFNARYKEQIGDTSAARAAFPESYID-------SDSRFIEKVTFKANMERRLGNFVAACDTYKEALE 421 (1071)
Q Consensus 355 ---~~~p---~i~~~~a~~e~~~g~~~~A~~~~~~al~~-------~~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~ 421 (1071)
+..| .++..++.++.+.|++++|+.++++|++- ..+.....+...+.++...+.++.|..+|.++++
T Consensus 274 ~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~ 353 (508)
T KOG1840|consen 274 VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALK 353 (508)
T ss_pred hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 3344 46777788889999999999999999731 1244556677788888889999999999999999
Q ss_pred HHhhh--ccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCC----C-----hHHHHHHHHHHHHHcCCCCchhhH
Q 001481 422 TAAEQ--RKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVP----N-----CKLLLEELIKFTMVHGGRSHISIV 490 (1071)
Q Consensus 422 ~~~~~--~~~p~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~~~P----~-----~~~lw~~~~~~e~~~g~~~~a~~~ 490 (1071)
++... ...+..++++.++|.++. ..|++++|+++|++||.+.- . ...+|..-... ...+.+..+.
T Consensus 354 i~~~~~g~~~~~~a~~~~nl~~l~~-~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~-~~~k~~~~a~-- 429 (508)
T KOG1840|consen 354 IYLDAPGEDNVNLAKIYANLAELYL-KMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAY-EELKKYEEAE-- 429 (508)
T ss_pred HHHhhccccchHHHHHHHHHHHHHH-HhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHH-HHhcccchHH--
Confidence 98622 223467889999999998 99999999999999998742 1 23466544444 4455555554
Q ss_pred HHHHHHhhccCCcccccCCh--hhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 001481 491 DAVISNALYSRPDVLKVFSL--EDVEDISSLYLQQFLDLCGTIHDIRNAWNQHIKLFPHT 548 (1071)
Q Consensus 491 r~l~e~Al~~~~d~~~~l~~--~~~~~lw~~~l~~~e~~~G~~e~a~~~~~ra~~~~p~~ 548 (1071)
.+|++++.... .+.+ .+....+.-.. ...+..|+++.|..+.++++......
T Consensus 430 -~l~~~~~~i~~----~~g~~~~~~~~~~~nL~-~~Y~~~g~~e~a~~~~~~~~~~~~~~ 483 (508)
T KOG1840|consen 430 -QLFEEAKDIMK----LCGPDHPDVTYTYLNLA-ALYRAQGNYEAAEELEEKVLNAREQR 483 (508)
T ss_pred -HHHHHHHHHHH----HhCCCCCchHHHHHHHH-HHHHHcccHHHHHHHHHHHHHHHHHc
Confidence 67777664421 1222 23344555666 67789999999999999988766443
No 81
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.27 E-value=2.5e-09 Score=127.32 Aligned_cols=447 Identities=15% Similarity=0.079 Sum_probs=260.4
Q ss_pred CcchHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 001481 20 GFGKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERA 99 (1071)
Q Consensus 20 ~~~~~~le~al~~nP~d~~~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P~s~~lW~~~a~~e~~~~~~e~A~~lferA 99 (1071)
++....|-++++.+++-..+|..++.+|+.. .+..+|++.|.+|.+.++.++..|...++.+.+..+.+.|..+.-++
T Consensus 475 ~~al~ali~alrld~~~apaf~~LG~iYrd~--~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~ 552 (1238)
T KOG1127|consen 475 ALALHALIRALRLDVSLAPAFAFLGQIYRDS--DDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRA 552 (1238)
T ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHH
Confidence 3445678899999999999999999999887 68889999999999999999999999999998888888888876655
Q ss_pred HHhcCCCH--HHHHHHHHHHHhhCCChhHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhc-cCC
Q 001481 100 VQSATYSV--DVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLR-FPS 176 (1071)
Q Consensus 100 L~~~P~s~--~lW~~y~~~~~~~~~~~e~ar~l~erAL~~~~~~~~s~~lW~~yi~fe~~~~~~~~a~~iy~ral~-~p~ 176 (1071)
-+..|.-. .-|....-++.+. ++...+..-|.-|++.-|.++ ..|....+..-+.|.+..+.++|.|+.. -|.
T Consensus 553 ~qka~a~~~k~nW~~rG~yyLea-~n~h~aV~~fQsALR~dPkD~---n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~ 628 (1238)
T KOG1127|consen 553 AQKAPAFACKENWVQRGPYYLEA-HNLHGAVCEFQSALRTDPKDY---NLWLGLGEAYPESGRYSHALKVFTKASLLRPL 628 (1238)
T ss_pred hhhchHHHHHhhhhhccccccCc-cchhhHHHHHHHHhcCCchhH---HHHHHHHHHHHhcCceehHHHhhhhhHhcCcH
Confidence 55544332 3455544444444 667777777888887766643 5788888877777888888888888754 354
Q ss_pred ccHHHHHH--------HHHHHHHhHHHhhhhhc------hhhHH----HHHHHhhcCCccCCcccch--hhHHHhhh---
Q 001481 177 KKLHHYYD--------SFKKLAGAWKEELECES------DSAME----FQSELVLEGEVPAYYKDDE--TSSVIKDL--- 233 (1071)
Q Consensus 177 ~~l~~~~~--------~~~~~~~~~~e~l~~~~------~~~~~----~~~~~~~~~~l~~~~~~~e--~~~~i~~~--- 233 (1071)
+.+..++. +|++.+..+...+.... .+..+ ......+++......+-.+ +...+-..
T Consensus 629 s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~ 708 (1238)
T KOG1127|consen 629 SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHS 708 (1238)
T ss_pred hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Confidence 43333322 12222222221111100 00000 0000111111110000000 00000000
Q ss_pred -cCcchhHH-HHHHHH------------HHHHHHHHHHHHHHHH---HHHHHHHHHHhcccCcCCCCCChhHHHHHHHHH
Q 001481 234 -LDPSVDLV-RSKAIQ------------KYRFIGEQIYKEASQL---DEKINCFENLIRRPYFHVKPLDDIQLKNWHDYL 296 (1071)
Q Consensus 234 -~d~~~~~~-~a~~l~------------~~~~~~~~~y~~a~~~---~~~~~~fE~ai~~~~~~~~~~~p~~~~~W~~y~ 296 (1071)
.+..-... ...+.+ -+.++...-++..... +-....++..+.. .. .-....-|.+++
T Consensus 709 ~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~h----ls--l~~~~~~WyNLG 782 (1238)
T KOG1127|consen 709 LQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAH----LS--LAIHMYPWYNLG 782 (1238)
T ss_pred hhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHH----HH--HhhccchHHHHh
Confidence 00000000 000000 0000000000000000 0001111111110 00 001134566655
Q ss_pred HHHHH-------hC-CHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhccchHHHHHHHHHH
Q 001481 297 SFAEK-------QG-DFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYK 368 (1071)
Q Consensus 297 ~~~~~-------~g-~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e 368 (1071)
.-+.+ .+ +...|+.++.+++..+.+...+|..++.+ ...|++.-|...|-+++-. .|.+...|+.++.+.
T Consensus 783 inylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~ 860 (1238)
T KOG1127|consen 783 INYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLV 860 (1238)
T ss_pred HHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccceeE
Confidence 43322 22 23478999999999999999999999986 5557788888888888765 566778899999999
Q ss_pred HHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhhcC
Q 001481 369 EQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTG 448 (1071)
Q Consensus 369 ~~~g~~~~A~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~g 448 (1071)
..+.+++-|...|.++. .++|.+...|+.-+.+.+..|++-++..+|...-++.. .........+|+.-..+-. ..|
T Consensus 861 l~n~d~E~A~~af~~~q-SLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~-~~gka~~f~Yw~c~te~h~-~Ng 937 (1238)
T KOG1127|consen 861 LENQDFEHAEPAFSSVQ-SLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCS-KEGKAKKFQYWLCATEIHL-QNG 937 (1238)
T ss_pred EecccHHHhhHHHHhhh-hcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhc-cccccchhhHHHHHHHHHH-hcc
Confidence 99999999999999998 88999999999999999999999999999988544421 1112222233333222222 334
Q ss_pred CHH----------HHHHHHHHHHhhCCChHHHHHHHHHHHHHcCC
Q 001481 449 SAD----------NARDILIDGIKHVPNCKLLLEELIKFTMVHGG 483 (1071)
Q Consensus 449 ~~e----------~Ar~i~e~al~~~P~~~~lw~~~~~~e~~~g~ 483 (1071)
+++ .|--+.++-+...|+....+...+.+...++.
T Consensus 938 ~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~e 982 (1238)
T KOG1127|consen 938 NIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEE 982 (1238)
T ss_pred chHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHH
Confidence 333 33334566666778766555544444444443
No 82
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.26 E-value=1.5e-10 Score=131.67 Aligned_cols=250 Identities=16% Similarity=0.089 Sum_probs=187.6
Q ss_pred HHHHHHHHHHHhcccCcCCCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCHHHH
Q 001481 263 LDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIA 342 (1071)
Q Consensus 263 ~~~~~~~fE~ai~~~~~~~~~~~p~~~~~W~~y~~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A 342 (1071)
+-++...||.+|+ .+|.+.++|..++..-..+++-..|+..++||+++.|++-++.+.+|..|...|.-..|
T Consensus 301 L~~A~LafEAAVk--------qdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 301 LSEAALAFEAAVK--------QDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred chHHHHHHHHHHh--------hChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHH
Confidence 4456678888886 58999999999999888888888999999999999999999999999999998888888
Q ss_pred HHHHHHHHHHhhccchHHHHHHHHHHHHh---------CCHHHHHHHHHHHhhccCh--hhHHHHHHHHHHHHHcCCHHH
Q 001481 343 SYALDRATQIFLKRLPVIHLFNARYKEQI---------GDTSAARAAFPESYIDSDS--RFIEKVTFKANMERRLGNFVA 411 (1071)
Q Consensus 343 ~~il~rAl~~~~~~~p~i~~~~a~~e~~~---------g~~~~A~~~~~~al~~~~p--~~~~~w~~~a~le~~~g~~~~ 411 (1071)
...|++=+.. +.+.+|+..+.-...- ..+....++|..+. ...| ..+++...++.++.-.|.|++
T Consensus 373 l~~L~~Wi~~---~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa-~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 373 LKMLDKWIRN---KPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAA-RQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHh---CccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHH-HhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 8888877664 1223333322111111 11223445555554 2234 568899999999999999999
Q ss_pred HHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCCCchhhHH
Q 001481 412 ACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLLLEELIKFTMVHGGRSHISIVD 491 (1071)
Q Consensus 412 A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~~~P~~~~lw~~~~~~e~~~g~~~~a~~~r 491 (1071)
|++||+.||.. .|.+..+|..+|..+. ...+.++|+..|.+||++.|..+..|.+++--.+..|.++++.
T Consensus 449 aiDcf~~AL~v------~Pnd~~lWNRLGAtLA-N~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~--- 518 (579)
T KOG1125|consen 449 AVDCFEAALQV------KPNDYLLWNRLGATLA-NGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAV--- 518 (579)
T ss_pred HHHHHHHHHhc------CCchHHHHHHhhHHhc-CCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHH---
Confidence 99999999998 8999999999999998 7888999999999999999999999988888888889888775
Q ss_pred HHHHHhhccCCcccccC-ChhhHHHHHHHHHHHHHHhcCCHHHHH
Q 001481 492 AVISNALYSRPDVLKVF-SLEDVEDISSLYLQQFLDLCGTIHDIR 535 (1071)
Q Consensus 492 ~l~e~Al~~~~d~~~~l-~~~~~~~lw~~~l~~~e~~~G~~e~a~ 535 (1071)
..|-.||...+...... .+.-.+.||...- .+....+..+.+.
T Consensus 519 ~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR-~als~~~~~D~l~ 562 (579)
T KOG1125|consen 519 KHLLEALSMQRKSRNHNKAPMASENIWQTLR-LALSAMNRSDLLQ 562 (579)
T ss_pred HHHHHHHHhhhcccccccCCcchHHHHHHHH-HHHHHcCCchHHH
Confidence 77777776543211011 1112466776665 5555555555333
No 83
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.25 E-value=3.8e-08 Score=104.99 Aligned_cols=329 Identities=9% Similarity=0.014 Sum_probs=203.4
Q ss_pred hCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcCCCHHHHH
Q 001481 32 EGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWF 111 (1071)
Q Consensus 32 ~nP~d~~~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P~s~~lW~~~a~~e~~~~~~e~A~~lferAL~~~P~s~~lW~ 111 (1071)
.+|.++.-.+.+...+-.. +.+..|..-|-.+++-+|+++.....-+..++..|....|..-|.|.|..-|...-.-+
T Consensus 33 ~~~advekhlElGk~lla~--~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARi 110 (504)
T KOG0624|consen 33 ASPADVEKHLELGKELLAR--GQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARI 110 (504)
T ss_pred CCHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHH
Confidence 4567788888888877666 78888999999999999999988888888888888888888889999999888887777
Q ss_pred HHHHHHHhhCCChhHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhccCCccHHHHHHHHHHHHH
Q 001481 112 HYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAG 191 (1071)
Q Consensus 112 ~y~~~~~~~~~~~e~ar~l~erAL~~~~~~~~s~~lW~~yi~fe~~~~~~~~a~~iy~ral~~p~~~l~~~~~~~~~~~~ 191 (1071)
.-...+++. |.++.|..=|+..|...+..-. .-.. +.+...+ ..+|.+......+.+
T Consensus 111 QRg~vllK~-Gele~A~~DF~~vl~~~~s~~~---~~ea-----------------qskl~~~--~e~~~l~~ql~s~~~ 167 (504)
T KOG0624|consen 111 QRGVVLLKQ-GELEQAEADFDQVLQHEPSNGL---VLEA-----------------QSKLALI--QEHWVLVQQLKSASG 167 (504)
T ss_pred Hhchhhhhc-ccHHHHHHHHHHHHhcCCCcch---hHHH-----------------HHHHHhH--HHHHHHHHHHHHHhc
Confidence 778888888 8889898889888887664321 1011 1111100 001111011111110
Q ss_pred hHHHhhhhhchhhHHHHHHHhhcCCccCCcccchhhHHHhhhcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001481 192 AWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFE 271 (1071)
Q Consensus 192 ~~~e~l~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~i~~~~d~~~~~~~a~~l~~~~~~~~~~y~~a~~~~~~~~~fE 271 (1071)
. | .+..+......
T Consensus 168 ~----------------------G----------------------------------------D~~~ai~~i~~----- 180 (504)
T KOG0624|consen 168 S----------------------G----------------------------------------DCQNAIEMITH----- 180 (504)
T ss_pred C----------------------C----------------------------------------chhhHHHHHHH-----
Confidence 0 0 00000000000
Q ss_pred HHhcccCcCCCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Q 001481 272 NLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQ 351 (1071)
Q Consensus 272 ~ai~~~~~~~~~~~p~~~~~W~~y~~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~ 351 (1071)
+..+.|-+..++...+..+...|++..|+.-++.+-++..++.+..+....++...|+.+.++...+.+++
T Consensus 181 ---------llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK 251 (504)
T KOG0624|consen 181 ---------LLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK 251 (504)
T ss_pred ---------HHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc
Confidence 00122333334444444444555555555555555555555555555555555555555555555555554
Q ss_pred HhhccchHHHHHH------------HHHHHHhCCHHHHHHHHHHHhhccChhhH----HHHHHHHHHHHHcCCHHHHHHH
Q 001481 352 IFLKRLPVIHLFN------------ARYKEQIGDTSAARAAFPESYIDSDSRFI----EKVTFKANMERRLGNFVAACDT 415 (1071)
Q Consensus 352 ~~~~~~p~i~~~~------------a~~e~~~g~~~~A~~~~~~al~~~~p~~~----~~w~~~a~le~~~g~~~~A~~~ 415 (1071)
+ .|+....+-.| ++-..+.+++.++.+.+++.+ ..+|.-. +.+.....+.+..|++.+|+..
T Consensus 252 l-dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vl-k~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqq 329 (504)
T KOG0624|consen 252 L-DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVL-KNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQ 329 (504)
T ss_pred c-CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH-hcCCcccceeeeeeheeeecccccCCHHHHHHH
Confidence 3 22111111111 111234566777777777777 4455422 2233445567778899999999
Q ss_pred HHHHHHHHhhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCChHHH
Q 001481 416 YKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLL 470 (1071)
Q Consensus 416 y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~~~P~~~~l 470 (1071)
+.++++. .|.+..++...|..+. ....|+.|+.-|++|++.++++..+
T Consensus 330 C~evL~~------d~~dv~~l~dRAeA~l-~dE~YD~AI~dye~A~e~n~sn~~~ 377 (504)
T KOG0624|consen 330 CKEVLDI------DPDDVQVLCDRAEAYL-GDEMYDDAIHDYEKALELNESNTRA 377 (504)
T ss_pred HHHHHhc------CchHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHhcCcccHHH
Confidence 9999988 7888899999998887 7888999999999999999887654
No 84
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=4.8e-08 Score=110.75 Aligned_cols=402 Identities=12% Similarity=0.020 Sum_probs=243.4
Q ss_pred CcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChhHHHHHHH
Q 001481 53 DDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFK 132 (1071)
Q Consensus 53 ~~~~~a~~vyeraL~~~P~s~~lW~~~a~~e~~~~~~e~A~~lferAL~~~P~s~~lW~~y~~~~~~~~~~~e~ar~l~e 132 (1071)
++++.|...|-.++...|.+.-++-.-..-+.+.++|++|.+--.++++.+|.-.+-|.....-+.-. +++++|+..|.
T Consensus 16 ~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~l-g~~~eA~~ay~ 94 (539)
T KOG0548|consen 16 GDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGL-GDYEEAILAYS 94 (539)
T ss_pred ccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhc-ccHHHHHHHHH
Confidence 89999999999999999999988888888889999999999999999999999999999888777766 99999999999
Q ss_pred HHHHhcCCCCCchHHHHHHHHHHHHc---cCHHHHHHHHHHHhccCCccHHHHHHHHHHHHHhHHH---hhhhhchhhHH
Q 001481 133 RALSFVGKDYLCHTMWDKYIEFEISQ---QRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAGAWKE---ELECESDSAME 206 (1071)
Q Consensus 133 rAL~~~~~~~~s~~lW~~yi~fe~~~---~~~~~a~~iy~ral~~p~~~l~~~~~~~~~~~~~~~e---~l~~~~~~~~~ 206 (1071)
++|+..+.+ ..|.....+.+... +..-.--.++.+....|..+....-..|...+..+.. .+..+.. ..
T Consensus 95 ~GL~~d~~n---~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~--d~ 169 (539)
T KOG0548|consen 95 EGLEKDPSN---KQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLN--DP 169 (539)
T ss_pred HHhhcCCch---HHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccc--cH
Confidence 999987753 22322222222000 0000000111111222222211111223332222111 0000000 00
Q ss_pred HHHHHhhcCCccCCcccchhhHH--HhhhcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCCCCC
Q 001481 207 FQSELVLEGEVPAYYKDDETSSV--IKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPL 284 (1071)
Q Consensus 207 ~~~~~~~~~~l~~~~~~~e~~~~--i~~~~d~~~~~~~a~~l~~~~~~~~~~y~~a~~~~~~~~~fE~ai~~~~~~~~~~ 284 (1071)
.+...+. .+.+..........+ .....++. .+....... .+ +....+..-+.
T Consensus 170 r~m~a~~-~l~~~~~~~~~~~~~~~~~~~~~p~---~~~~~~~~~---~~-------d~~ee~~~k~~------------ 223 (539)
T KOG0548|consen 170 RLMKADG-QLKGVDELLFYASGIEILASMAEPC---KQEHNGFPI---IE-------DNTEERRVKEK------------ 223 (539)
T ss_pred HHHHHHH-HHhcCccccccccccccCCCCCCcc---cccCCCCCc---cc-------hhHHHHHHHHh------------
Confidence 0000000 000000000000000 00000000 000000000 00 00000000000
Q ss_pred ChhHHHHHHHHHHHHHHhCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhccchH----H
Q 001481 285 DDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPV----I 360 (1071)
Q Consensus 285 ~p~~~~~W~~y~~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~----i 360 (1071)
..-...++...-+..+++.++..|..++... .......+.+-.+...|.+..++..++.|++. ....-. |
T Consensus 224 ----a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~-gre~rad~klI 297 (539)
T KOG0548|consen 224 ----AHKEKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEV-GRELRADYKLI 297 (539)
T ss_pred ----hhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHH-hHHHHHHHHHH
Confidence 0122333444445567899999999999998 88888888888899999999999888888875 111100 1
Q ss_pred HHH---HHHHHHHhCCHHHHHHHHHHHhhcc-------------------------ChhhHHHHHHHHHHHHHcCCHHHH
Q 001481 361 HLF---NARYKEQIGDTSAARAAFPESYIDS-------------------------DSRFIEKVTFKANMERRLGNFVAA 412 (1071)
Q Consensus 361 ~~~---~a~~e~~~g~~~~A~~~~~~al~~~-------------------------~p~~~~~w~~~a~le~~~g~~~~A 412 (1071)
-.. .+..+.+.++++.|+..|.+++.+. +|....--...++-..+.|++..|
T Consensus 298 ak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~A 377 (539)
T KOG0548|consen 298 AKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEA 377 (539)
T ss_pred HHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHH
Confidence 111 1223445678888999998887421 122222222334445567999999
Q ss_pred HHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCCCchhhHHH
Q 001481 413 CDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLLLEELIKFTMVHGGRSHISIVDA 492 (1071)
Q Consensus 413 ~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~~~P~~~~lw~~~~~~e~~~g~~~~a~~~r~ 492 (1071)
++.|.+||+. .|.++.+|-+.|.++. .+|.+..|.+-.+.+++++|+....|..-+..+....+++++. .
T Consensus 378 v~~YteAIkr------~P~Da~lYsNRAac~~-kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAl---e 447 (539)
T KOG0548|consen 378 VKHYTEAIKR------DPEDARLYSNRAACYL-KLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKAL---E 447 (539)
T ss_pred HHHHHHHHhc------CCchhHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHH---H
Confidence 9999999998 8999999999999998 9999999999999999999999998888777777776777664 8
Q ss_pred HHHHhhccCC
Q 001481 493 VISNALYSRP 502 (1071)
Q Consensus 493 l~e~Al~~~~ 502 (1071)
.|..|+..+|
T Consensus 448 ay~eale~dp 457 (539)
T KOG0548|consen 448 AYQEALELDP 457 (539)
T ss_pred HHHHHHhcCc
Confidence 8999997766
No 85
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.20 E-value=7.8e-09 Score=123.15 Aligned_cols=365 Identities=13% Similarity=0.087 Sum_probs=221.9
Q ss_pred CCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHccCHHHHHH
Q 001481 87 CSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQ 166 (1071)
Q Consensus 87 ~~~e~A~~lferAL~~~P~s~~lW~~y~~~~~~~~~~~e~ar~l~erAL~~~~~~~~s~~lW~~yi~fe~~~~~~~~a~~ 166 (1071)
++.+.+...|-++++.++.....|..+..+++.. .+...|++.|.+|...-+.+. .-|....+...+...++.|..
T Consensus 472 K~~~~al~ali~alrld~~~apaf~~LG~iYrd~-~Dm~RA~kCf~KAFeLDatda---eaaaa~adtyae~~~we~a~~ 547 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLDVSLAPAFAFLGQIYRDS-DDMKRAKKCFDKAFELDATDA---EAAAASADTYAEESTWEEAFE 547 (1238)
T ss_pred hhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCchhh---hhHHHHHHHhhccccHHHHHH
Confidence 3577888889999999988888898888888776 577888899999888765543 456666666666666777666
Q ss_pred HHHHHhccCCccHHHHHHHHHHHHHhHHHhhhhhchhhHHHHHHHhhcCCccCCcccchhhHHHhhhcCcchhHHHHHHH
Q 001481 167 IFVQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAI 246 (1071)
Q Consensus 167 iy~ral~~p~~~l~~~~~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~i~~~~d~~~~~~~a~~l 246 (1071)
|..++-..... +.. ...|..
T Consensus 548 I~l~~~qka~a-----~~~--------------------------------------------k~nW~~----------- 567 (1238)
T KOG1127|consen 548 ICLRAAQKAPA-----FAC--------------------------------------------KENWVQ----------- 567 (1238)
T ss_pred HHHHHhhhchH-----HHH--------------------------------------------Hhhhhh-----------
Confidence 63332211000 000 001110
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCCCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHhhcCCCCCHHHH
Q 001481 247 QKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFW 326 (1071)
Q Consensus 247 ~~~~~~~~~~y~~a~~~~~~~~~fE~ai~~~~~~~~~~~p~~~~~W~~y~~~~~~~g~~~~a~~~yerAL~~~p~~~~lW 326 (1071)
+.-+|-++...-..+..|..+++ .+|.+...|..++..+-+.|.+..|.++|.||....|.+--.-
T Consensus 568 ------rG~yyLea~n~h~aV~~fQsALR--------~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~ 633 (1238)
T KOG1127|consen 568 ------RGPYYLEAHNLHGAVCEFQSALR--------TDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGR 633 (1238)
T ss_pred ------ccccccCccchhhHHHHHHHHhc--------CCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHH
Confidence 11112222233334445566665 5788999999999999999999999999999999988887776
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHHhhcc------chHHHHHHHHHHHHhCCHHHHHHHHHHHhh-------cc-----
Q 001481 327 MRYVDFMESKGGREIASYALDRATQIFLKR------LPVIHLFNARYKEQIGDTSAARAAFPESYI-------DS----- 388 (1071)
Q Consensus 327 ~~ya~~l~~~g~~e~A~~il~rAl~~~~~~------~p~i~~~~a~~e~~~g~~~~A~~~~~~al~-------~~----- 388 (1071)
+.-+......|++.+|...+...+..+... ..+.++..+......|-..+|..+++++++ +.
T Consensus 634 fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~ 713 (1238)
T KOG1127|consen 634 FKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDR 713 (1238)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhH
Confidence 777777777888888888777766542211 112222222222222222222222222221 00
Q ss_pred ----------------Ch-----------------------------------------hhHHHHHHHHHHHHH------
Q 001481 389 ----------------DS-----------------------------------------RFIEKVTFKANMERR------ 405 (1071)
Q Consensus 389 ----------------~p-----------------------------------------~~~~~w~~~a~le~~------ 405 (1071)
.| .....|+.++.-+.+
T Consensus 714 ~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~ 793 (1238)
T KOG1127|consen 714 LQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLG 793 (1238)
T ss_pred HHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcC
Confidence 00 112225554443332
Q ss_pred --cCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCC
Q 001481 406 --LGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLLLEELIKFTMVHGG 483 (1071)
Q Consensus 406 --~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~~~P~~~~lw~~~~~~e~~~g~ 483 (1071)
..+...|+.++++++.+ ...+..+|..+|-+ . ..|++.-|-.+|.+.+-.+|.+.-.|.++.-+.....+
T Consensus 794 et~~~~~~Ai~c~KkaV~L------~ann~~~WnaLGVl-s-g~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d 865 (1238)
T KOG1127|consen 794 ETMKDACTAIRCCKKAVSL------CANNEGLWNALGVL-S-GIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQD 865 (1238)
T ss_pred CcchhHHHHHHHHHHHHHH------hhccHHHHHHHHHh-h-ccchhhhhhhhhhhhhhccccchhheeccceeEEeccc
Confidence 12234677777777777 55666777777666 2 56777777777777777777777777777766666666
Q ss_pred CCchhhHHHHHHHhhccCCcccccCChhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcc
Q 001481 484 RSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQQFLDLCGTIHDIRNAWNQHIKLFPHTVR 550 (1071)
Q Consensus 484 ~~~a~~~r~l~e~Al~~~~d~~~~l~~~~~~~lw~~~l~~~e~~~G~~e~a~~~~~ra~~~~p~~~~ 550 (1071)
++.+. ..|.++.+..|+ .-.-|..-. .+.+..|++-....++.....++-+++.
T Consensus 866 ~E~A~---~af~~~qSLdP~---------nl~~WlG~A-li~eavG~ii~~~~lfaHs~el~~~~gk 919 (1238)
T KOG1127|consen 866 FEHAE---PAFSSVQSLDPL---------NLVQWLGEA-LIPEAVGRIIERLILFAHSDELCSKEGK 919 (1238)
T ss_pred HHHhh---HHHHhhhhcCch---------hhHHHHHHH-HhHHHHHHHHHHHHHHHhhHHhhccccc
Confidence 65554 777777765542 223465555 6677788877777777777777766554
No 86
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.20 E-value=3.2e-09 Score=112.40 Aligned_cols=234 Identities=14% Similarity=0.066 Sum_probs=195.2
Q ss_pred HHHHHHHHhCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhCC
Q 001481 294 DYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGD 373 (1071)
Q Consensus 294 ~y~~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~ 373 (1071)
.++.++.+.|-+.+|.+.+..+|+..|. .+-+.-+++.|.+.+..+.|+.+|..+++. .|.+-...+..|++.+..++
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q~~~-~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam~~ 305 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQFPH-PDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAMEQ 305 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhcCCc-hhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHHHh
Confidence 3577888999999999999999988764 466777899999999999999999999987 44444567778899999999
Q ss_pred HHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhhcCCHHHH
Q 001481 374 TSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNA 453 (1071)
Q Consensus 374 ~~~A~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~g~~e~A 453 (1071)
.++|.++|+.++ +.+|.++++.--.+.-+.-.++.+-|...|++.+.. ...++++|.++|.+.. -.+.+|-+
T Consensus 306 ~~~a~~lYk~vl-k~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm------G~~speLf~NigLCC~-yaqQ~D~~ 377 (478)
T KOG1129|consen 306 QEDALQLYKLVL-KLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQM------GAQSPELFCNIGLCCL-YAQQIDLV 377 (478)
T ss_pred HHHHHHHHHHHH-hcCCccceeeeeeeeccccCCChHHHHHHHHHHHHh------cCCChHHHhhHHHHHH-hhcchhhh
Confidence 999999999999 667777766544444444568999999999999998 7889999999999987 78999999
Q ss_pred HHHHHHHHhhC--CC-hHHHHHHHHHHHHHcCCCCchhhHHHHHHHhhccCCcccccCChhhHHHHHHHHHHHHHHhcCC
Q 001481 454 RDILIDGIKHV--PN-CKLLLEELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQQFLDLCGT 530 (1071)
Q Consensus 454 r~i~e~al~~~--P~-~~~lw~~~~~~e~~~g~~~~a~~~r~l~e~Al~~~~d~~~~l~~~~~~~lw~~~l~~~e~~~G~ 530 (1071)
...|++|+... |+ ..++|.++..+....||+.-+. .+|+-||..++ +..+.+-+..+ ++.+-|+
T Consensus 378 L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~---rcfrlaL~~d~--------~h~ealnNLav--L~~r~G~ 444 (478)
T KOG1129|consen 378 LPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAK---RCFRLALTSDA--------QHGEALNNLAV--LAARSGD 444 (478)
T ss_pred HHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHH---HHHHHHhccCc--------chHHHHHhHHH--HHhhcCc
Confidence 99999999873 33 5689999999998899988764 88999997765 34555555555 8889999
Q ss_pred HHHHHHHHHHHHHhCCCCcc
Q 001481 531 IHDIRNAWNQHIKLFPHTVR 550 (1071)
Q Consensus 531 ~e~a~~~~~ra~~~~p~~~~ 550 (1071)
++.|+.++.-|-...|+-..
T Consensus 445 i~~Arsll~~A~s~~P~m~E 464 (478)
T KOG1129|consen 445 ILGARSLLNAAKSVMPDMAE 464 (478)
T ss_pred hHHHHHHHHHhhhhCccccc
Confidence 99999999999999998443
No 87
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.17 E-value=6e-10 Score=110.78 Aligned_cols=125 Identities=18% Similarity=-0.005 Sum_probs=109.6
Q ss_pred HHHHHHHHHHhhccchHHHHHHHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001481 343 SYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALET 422 (1071)
Q Consensus 343 ~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~~A~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~ 422 (1071)
...|++|+++ .|..+...+..+...|++++|...|.+++ .++|.+..+|+.++.+....|++++|+..|++|+++
T Consensus 13 ~~~~~~al~~----~p~~~~~~g~~~~~~g~~~~A~~~~~~al-~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 13 EDILKQLLSV----DPETVYASGYASWQEGDYSRAVIDFSWLV-MAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHHc----CHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 4678888886 66667777888888999999999999998 788999999999999999999999999999999998
Q ss_pred HhhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHH
Q 001481 423 AAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLLLEELIKFTM 479 (1071)
Q Consensus 423 ~~~~~~~p~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~~~P~~~~lw~~~~~~e~ 479 (1071)
.|.++..|..+|.++. ..|++++|++.|+++++..|++...|........
T Consensus 88 ------~p~~~~a~~~lg~~l~-~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 88 ------DASHPEPVYQTGVCLK-MMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred ------CCCCcHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 7889999999999988 8999999999999999999999998877666543
No 88
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.17 E-value=9.9e-10 Score=125.07 Aligned_cols=231 Identities=14% Similarity=0.057 Sum_probs=177.2
Q ss_pred HHHHHHHhCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhCCH
Q 001481 295 YLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDT 374 (1071)
Q Consensus 295 y~~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~ 374 (1071)
-+.-+.+.|++.+|.-+||.|+..+|.+.++|..++......++-..|+..+.||+++ .|.+-.+.+.+|-.+...|.-
T Consensus 291 eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L-dP~NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 291 EGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLEL-DPTNLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc-CCccHHHHHHHHHHHhhhhhH
Confidence 3455568899999999999999999999999999999999999999999999999997 666667888888888888888
Q ss_pred HHHHHHHHHHhhccChhhHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHhhhccCC--CcHHHHHHHHHHH
Q 001481 375 SAARAAFPESYIDSDSRFIEKVTFKANMERRL---------GNFVAACDTYKEALETAAEQRKFH--TLPLLYVQFSRLT 443 (1071)
Q Consensus 375 ~~A~~~~~~al~~~~p~~~~~w~~~a~le~~~---------g~~~~A~~~y~~Al~~~~~~~~~p--~~~~l~~~~A~~~ 443 (1071)
..|.+.+.+-| ...|.+ +|+..+.-..+. ..+....++|-.|... .+ .++++...+|-++
T Consensus 370 ~~Al~~L~~Wi-~~~p~y--~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~------~~~~~DpdvQ~~LGVLy 440 (579)
T KOG1125|consen 370 NQALKMLDKWI-RNKPKY--VHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQ------LPTKIDPDVQSGLGVLY 440 (579)
T ss_pred HHHHHHHHHHH-HhCccc--hhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHh------CCCCCChhHHhhhHHHH
Confidence 89999999988 333322 233332111111 1234555666666555 34 6899999999998
Q ss_pred HhhcCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCCCchhhHHHHHHHhhccCCcccccCChhhHHHHHHHHHHH
Q 001481 444 YTTTGSADNARDILIDGIKHVPNCKLLLEELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQQ 523 (1071)
Q Consensus 444 ~~~~g~~e~Ar~i~e~al~~~P~~~~lw~~~~~~e~~~g~~~~a~~~r~l~e~Al~~~~d~~~~l~~~~~~~lw~~~l~~ 523 (1071)
+ ..|++++|.++|+.||...|++..+|..|.-.+..-...++| -..|.+|+..-|.+. .......|
T Consensus 441 ~-ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EA---IsAY~rALqLqP~yV---R~RyNlgI------- 506 (579)
T KOG1125|consen 441 N-LSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEA---ISAYNRALQLQPGYV---RVRYNLGI------- 506 (579)
T ss_pred h-cchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHH---HHHHHHHHhcCCCee---eeehhhhh-------
Confidence 8 999999999999999999999999999999887655444454 489999998877431 11111111
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCc
Q 001481 524 FLDLCGTIHDIRNAWNQHIKLFPHTV 549 (1071)
Q Consensus 524 ~e~~~G~~e~a~~~~~ra~~~~p~~~ 549 (1071)
-....|.+.+|.+.|-+|+.+.+++-
T Consensus 507 S~mNlG~ykEA~~hlL~AL~mq~ks~ 532 (579)
T KOG1125|consen 507 SCMNLGAYKEAVKHLLEALSMQRKSR 532 (579)
T ss_pred hhhhhhhHHHHHHHHHHHHHhhhccc
Confidence 22356999999999999999998743
No 89
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.16 E-value=6.9e-09 Score=121.49 Aligned_cols=206 Identities=14% Similarity=0.100 Sum_probs=162.0
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHhhcC--------CCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhc----c
Q 001481 289 LKNWHDYLSFAEKQGDFDWVVKLYERCLIP--------CADYPEFWMRYVDFMESKGGREIASYALDRATQIFLK----R 356 (1071)
Q Consensus 289 ~~~W~~y~~~~~~~g~~~~a~~~yerAL~~--------~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~----~ 356 (1071)
......++.++...+++++|+.+|++||.. +|....+..+++..|...|++++|...+++|++++.+ .
T Consensus 241 a~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~ 320 (508)
T KOG1840|consen 241 ASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGAS 320 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccC
Confidence 344556888999999999999999999953 4556788999999999999999999999999998644 1
Q ss_pred ch---HHHHHHHHHHHHhCCHHHHHHHHHHHhhcc-------ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhh
Q 001481 357 LP---VIHLFNARYKEQIGDTSAARAAFPESYIDS-------DSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQ 426 (1071)
Q Consensus 357 ~p---~i~~~~a~~e~~~g~~~~A~~~~~~al~~~-------~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~ 426 (1071)
.+ ......+.++...+++++|..+|.++++-+ ++....++..++.++...|.+++|+++|++||......
T Consensus 321 ~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~ 400 (508)
T KOG1840|consen 321 HPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILREL 400 (508)
T ss_pred hHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhc
Confidence 12 345555667788999999999999887421 34567889999999999999999999999999997543
Q ss_pred cc--CCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhh-------CCChHHHHHHHHHHHHHcCCCCchhhHHHHHHHh
Q 001481 427 RK--FHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKH-------VPNCKLLLEELIKFTMVHGGRSHISIVDAVISNA 497 (1071)
Q Consensus 427 ~~--~p~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~~-------~P~~~~lw~~~~~~e~~~g~~~~a~~~r~l~e~A 497 (1071)
.. .......+.++|..++ +.+.+.+|.+.|++++.+ .|+....+.+++.++...|+++.+. .+.+++
T Consensus 401 ~~~~~~~~~~~l~~la~~~~-~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~---~~~~~~ 476 (508)
T KOG1840|consen 401 LGKKDYGVGKPLNQLAEAYE-ELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAE---ELEEKV 476 (508)
T ss_pred ccCcChhhhHHHHHHHHHHH-HhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHH---HHHHHH
Confidence 32 2334556677788776 899999999998888765 2334467889999999999999886 444444
Q ss_pred h
Q 001481 498 L 498 (1071)
Q Consensus 498 l 498 (1071)
+
T Consensus 477 ~ 477 (508)
T KOG1840|consen 477 L 477 (508)
T ss_pred H
Confidence 4
No 90
>PLN02789 farnesyltranstransferase
Probab=99.16 E-value=7.2e-09 Score=116.34 Aligned_cols=199 Identities=11% Similarity=0.038 Sum_probs=167.0
Q ss_pred HHHHHHHHHhcccCcCCCCCChhHHHHHHHHHHHHHHhC-CHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCH--HH
Q 001481 265 EKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQG-DFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGR--EI 341 (1071)
Q Consensus 265 ~~~~~fE~ai~~~~~~~~~~~p~~~~~W~~y~~~~~~~g-~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~--e~ 341 (1071)
+++..++.+|. ++|.+..+|...+..+...| ++++++..+++++..+|++..+|...+.++...|.. ++
T Consensus 55 rAL~lt~~aI~--------lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~ 126 (320)
T PLN02789 55 RALDLTADVIR--------LNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANK 126 (320)
T ss_pred HHHHHHHHHHH--------HCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHH
Confidence 44445555554 68999999999999888888 579999999999999999999999999888888863 67
Q ss_pred HHHHHHHHHHHhhccchHHHHHHHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHc---CCH----HHHHH
Q 001481 342 ASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRL---GNF----VAACD 414 (1071)
Q Consensus 342 A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~~A~~~~~~al~~~~p~~~~~w~~~a~le~~~---g~~----~~A~~ 414 (1071)
+...++++++. .+++-.+|...+.++...|++++|++.+.++| +.++.+..+|...+.+.... |++ +++..
T Consensus 127 el~~~~kal~~-dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I-~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~ 204 (320)
T PLN02789 127 ELEFTRKILSL-DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLL-EEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELK 204 (320)
T ss_pred HHHHHHHHHHh-CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHH-HHCCCchhHHHHHHHHHHhccccccccccHHHHHH
Confidence 89999999987 66666789998999999999999999999999 77899999999998877665 333 56788
Q ss_pred HHHHHHHHHhhhccCCCcHHHHHHHHHHHHhh----cCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHH
Q 001481 415 TYKEALETAAEQRKFHTLPLLYVQFSRLTYTT----TGSADNARDILIDGIKHVPNCKLLLEELIKFTMV 480 (1071)
Q Consensus 415 ~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~----~g~~e~Ar~i~e~al~~~P~~~~lw~~~~~~e~~ 480 (1071)
+..++|.. .|.+..+|..++.++. . .+...+|...+.+++...|.+..+...++++...
T Consensus 205 y~~~aI~~------~P~N~SaW~Yl~~ll~-~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 205 YTIDAILA------NPRNESPWRYLRGLFK-DDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHh------CCCCcCHHHHHHHHHh-cCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 88899998 7899999999999886 4 3456779999999999999988877777777754
No 91
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.15 E-value=8e-08 Score=110.96 Aligned_cols=313 Identities=10% Similarity=-0.073 Sum_probs=185.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcCCCHHH
Q 001481 33 GSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLC---YGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDV 109 (1071)
Q Consensus 33 nP~d~~~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P~s---~~lW~~~a~~e~~~~~~e~A~~lferAL~~~P~s~~l 109 (1071)
+|+..-.|..++.++... ++.+.+.+.|.++....|.+ .+.+...+-.....+++++|..++++++...|.+...
T Consensus 2 dp~~~~a~~~~a~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a 79 (355)
T cd05804 2 DPDFALGHAAAALLLLLG--GERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLA 79 (355)
T ss_pred CCccHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHH
Confidence 788888999988877766 77777788888888888865 3455555556677789999999999999999998877
Q ss_pred HHH---HHHHHHhhCCChhHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhccCCccHHHHHHHH
Q 001481 110 WFH---YCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSF 186 (1071)
Q Consensus 110 W~~---y~~~~~~~~~~~e~ar~l~erAL~~~~~~~~s~~lW~~yi~fe~~~~~~~~a~~iy~ral~~p~~~l~~~~~~~ 186 (1071)
|.. ++...... +....+.++++. ..+.++.....+..........|.++.+...|++++.
T Consensus 80 ~~~~~~~~~~~~~~-~~~~~~~~~l~~---~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~------------- 142 (355)
T cd05804 80 LKLHLGAFGLGDFS-GMRDHVARVLPL---WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALE------------- 142 (355)
T ss_pred HHHhHHHHHhcccc-cCchhHHHHHhc---cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-------------
Confidence 763 22111111 233333333332 1122222111111222222333334444333333332
Q ss_pred HHHHHhHHHhhhhhchhhHHHHHHHhhcCCccCCcccchhhHHHhhhcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001481 187 KKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEK 266 (1071)
Q Consensus 187 ~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~i~~~~d~~~~~~~a~~l~~~~~~~~~~y~~a~~~~~~ 266 (1071)
T Consensus 143 -------------------------------------------------------------------------------- 142 (355)
T cd05804 143 -------------------------------------------------------------------------------- 142 (355)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhcccCcCCCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHhhcCCCCC----HHHHHHHHHHHHhhCCHHHH
Q 001481 267 INCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADY----PEFWMRYVDFMESKGGREIA 342 (1071)
Q Consensus 267 ~~~fE~ai~~~~~~~~~~~p~~~~~W~~y~~~~~~~g~~~~a~~~yerAL~~~p~~----~~lW~~ya~~l~~~g~~e~A 342 (1071)
+.|++...+..++..+...|++++++.+|++++...+.. ..+|..++.++...|++++|
T Consensus 143 -----------------~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A 205 (355)
T cd05804 143 -----------------LNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAA 205 (355)
T ss_pred -----------------hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHH
Confidence 223334456666666677888899999999988765533 24577888889999999999
Q ss_pred HHHHHHHHHHhhccch-HHHH-HH---HHHHHHhCCHHHHHHH---HHHHhhccC-hhhHHHHHHHHHHHHHcCCHHHHH
Q 001481 343 SYALDRATQIFLKRLP-VIHL-FN---ARYKEQIGDTSAARAA---FPESYIDSD-SRFIEKVTFKANMERRLGNFVAAC 413 (1071)
Q Consensus 343 ~~il~rAl~~~~~~~p-~i~~-~~---a~~e~~~g~~~~A~~~---~~~al~~~~-p~~~~~w~~~a~le~~~g~~~~A~ 413 (1071)
+.+|++++.. .+..+ .... .. .......|..+.+... ......... +.........+......|+.+.|.
T Consensus 206 ~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~ 284 (355)
T cd05804 206 LAIYDTHIAP-SAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALD 284 (355)
T ss_pred HHHHHHHhcc-ccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHH
Confidence 9999988653 12111 1111 11 1112223322222222 222111101 112223345666677789999999
Q ss_pred HHHHHHHHHHhh---hccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhh
Q 001481 414 DTYKEALETAAE---QRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKH 463 (1071)
Q Consensus 414 ~~y~~Al~~~~~---~~~~p~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~~ 463 (1071)
.+++........ .........+.+..|.+++ ..|++++|+..+..++..
T Consensus 285 ~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~-~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 285 KLLAALKGRASSADDNKQPARDVGLPLAEALYAF-AEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHH-HcCCHHHHHHHHHHHHHH
Confidence 999988776433 1111123445566677777 999999999999999854
No 92
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.15 E-value=9.6e-09 Score=106.07 Aligned_cols=190 Identities=17% Similarity=0.185 Sum_probs=157.4
Q ss_pred CHHHHHHHHHHhhcCCC---CCHHHHHHHHH---HHHhhCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhCCHHHH
Q 001481 304 DFDWVVKLYERCLIPCA---DYPEFWMRYVD---FMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAA 377 (1071)
Q Consensus 304 ~~~~a~~~yerAL~~~p---~~~~lW~~ya~---~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~~A 377 (1071)
+.+++..+....+...+ .-.+.|.-|=. .....|+.+.|..++++....| |..+.+-.+.|.+++..|.+++|
T Consensus 27 nseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~A 105 (289)
T KOG3060|consen 27 NSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKEA 105 (289)
T ss_pred CHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhhH
Confidence 34445444444443211 22355555533 3445688899999998887775 78888999999999999999999
Q ss_pred HHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHH
Q 001481 378 RAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDIL 457 (1071)
Q Consensus 378 ~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~g~~e~Ar~i~ 457 (1071)
.++|++.+ +-+|.+.-++-+...+.+..|.--+|++.+.+-++. ++.+.++|..+|.+|. ..|++++|.-||
T Consensus 106 ~e~y~~lL-~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~------F~~D~EAW~eLaeiY~-~~~~f~kA~fCl 177 (289)
T KOG3060|consen 106 IEYYESLL-EDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK------FMNDQEAWHELAEIYL-SEGDFEKAAFCL 177 (289)
T ss_pred HHHHHHHh-ccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH------hcCcHHHHHHHHHHHH-hHhHHHHHHHHH
Confidence 99999999 557877777777777888889888999999999998 8999999999999998 999999999999
Q ss_pred HHHHhhCCChHHHHHHHHHHHHHcCCCCchhhHHHHHHHhhccCC
Q 001481 458 IDGIKHVPNCKLLLEELIKFTMVHGGRSHISIVDAVISNALYSRP 502 (1071)
Q Consensus 458 e~al~~~P~~~~lw~~~~~~e~~~g~~~~a~~~r~l~e~Al~~~~ 502 (1071)
|..+-..|.++.++..|+++..-.|..++....|+.|++|+..++
T Consensus 178 EE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 178 EELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred HHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 999999999999999999999999999888889999999997654
No 93
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.13 E-value=5e-07 Score=96.47 Aligned_cols=201 Identities=14% Similarity=0.220 Sum_probs=144.9
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHhhcCCCCC-----HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhccchHHHHHHH
Q 001481 291 NWHDYLSFAEKQGDFDWVVKLYERCLIPCADY-----PEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNA 365 (1071)
Q Consensus 291 ~W~~y~~~~~~~g~~~~a~~~yerAL~~~p~~-----~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a 365 (1071)
+...++.++....+.++|+++-++.++..+.. ..+++.+|.-+....+++.|+..+.||+.. .|+|..+-+..+
T Consensus 143 AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa-~~~cvRAsi~lG 221 (389)
T COG2956 143 ALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQA-DKKCVRASIILG 221 (389)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh-Cccceehhhhhh
Confidence 34445555555556666666666666554433 467788888888888899999999999987 677777888889
Q ss_pred HHHHHhCCHHHHHHHHHHHhhccChhhH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHH
Q 001481 366 RYKEQIGDTSAARAAFPESYIDSDSRFI-EKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTY 444 (1071)
Q Consensus 366 ~~e~~~g~~~~A~~~~~~al~~~~p~~~-~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~ 444 (1071)
+++...|++..|.+.+++++ +-+|++. .+.-.+..++...|..++.+..+.++++. .....+-+.++.+.+
T Consensus 222 ~v~~~~g~y~~AV~~~e~v~-eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~-------~~g~~~~l~l~~lie 293 (389)
T COG2956 222 RVELAKGDYQKAVEALERVL-EQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET-------NTGADAELMLADLIE 293 (389)
T ss_pred HHHHhccchHHHHHHHHHHH-HhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc-------cCCccHHHHHHHHHH
Confidence 99999999999999999998 5566654 55667777888999999999999999987 234556666777766
Q ss_pred hhcCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCC----CchhhHHHHHHHhhccCC
Q 001481 445 TTTGSADNARDILIDGIKHVPNCKLLLEELIKFTMVHGGR----SHISIVDAVISNALYSRP 502 (1071)
Q Consensus 445 ~~~g~~e~Ar~i~e~al~~~P~~~~lw~~~~~~e~~~g~~----~~a~~~r~l~e~Al~~~~ 502 (1071)
.....+.|..+..+-|+..|.-.. +..++++.....+. +.+..+|+++..-+..+|
T Consensus 294 -~~~G~~~Aq~~l~~Ql~r~Pt~~g-f~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~ 353 (389)
T COG2956 294 -LQEGIDAAQAYLTRQLRRKPTMRG-FHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKP 353 (389)
T ss_pred -HhhChHHHHHHHHHHHhhCCcHHH-HHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcC
Confidence 788899999999999999996444 33455555443322 223345566655555444
No 94
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.10 E-value=4.7e-09 Score=128.76 Aligned_cols=164 Identities=10% Similarity=-0.017 Sum_probs=131.4
Q ss_pred HHHHHhhCCHHHHHHHHHHHHHHh--hccchHHHHHHHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcC
Q 001481 330 VDFMESKGGREIASYALDRATQIF--LKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLG 407 (1071)
Q Consensus 330 a~~l~~~g~~e~A~~il~rAl~~~--~~~~p~i~~~~a~~e~~~g~~~~A~~~~~~al~~~~p~~~~~w~~~a~le~~~g 407 (1071)
-..++.++....+...+-+++... .+..+..++.+|+++...|++++|+.++++++ ++.|++..++..++..+.+.+
T Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~-~~~Pd~~~a~~~~a~~L~~~~ 134 (694)
T PRK15179 56 RQVLERHAAVHKPAAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIH-QRFPDSSEAFILMLRGVKRQQ 134 (694)
T ss_pred HHHHHHhhhhcchHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHH-hhCCCcHHHHHHHHHHHHHhc
Confidence 345566666666666666666531 12345678888888888888888888888888 788888888888888888888
Q ss_pred CHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCCCch
Q 001481 408 NFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLLLEELIKFTMVHGGRSHI 487 (1071)
Q Consensus 408 ~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~~~P~~~~lw~~~~~~e~~~g~~~~a 487 (1071)
.+++|+..+++++.. .|.++.....+|.++. ..|.+++|..+|++++...|++...|..|+..++..|+.++|
T Consensus 135 ~~eeA~~~~~~~l~~------~p~~~~~~~~~a~~l~-~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A 207 (694)
T PRK15179 135 GIEAGRAEIELYFSG------GSSSAREILLEAKSWD-EIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRA 207 (694)
T ss_pred cHHHHHHHHHHHhhc------CCCCHHHHHHHHHHHH-HhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH
Confidence 888888888888888 7888888888888887 888889999999998888888888888888888888888877
Q ss_pred hhHHHHHHHhhccCCcc
Q 001481 488 SIVDAVISNALYSRPDV 504 (1071)
Q Consensus 488 ~~~r~l~e~Al~~~~d~ 504 (1071)
. ..|++|+....++
T Consensus 208 ~---~~~~~a~~~~~~~ 221 (694)
T PRK15179 208 R---DVLQAGLDAIGDG 221 (694)
T ss_pred H---HHHHHHHHhhCcc
Confidence 5 8888888765543
No 95
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.10 E-value=6.1e-09 Score=112.88 Aligned_cols=111 Identities=14% Similarity=0.037 Sum_probs=91.1
Q ss_pred CChhHHHHHHHHHHHHHHhCCHHHHHHHHHHhhcCCCCCH---HHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhccchH-
Q 001481 284 LDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYP---EFWMRYVDFMESKGGREIASYALDRATQIFLKRLPV- 359 (1071)
Q Consensus 284 ~~p~~~~~W~~y~~~~~~~g~~~~a~~~yerAL~~~p~~~---~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~- 359 (1071)
.++.....+...+..+...|+++.|+..|++++...|.+. .+|+.++..+...|++++|+..|+++++. .|+.+.
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~-~p~~~~~ 106 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL-HPNHPDA 106 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-CcCCCch
Confidence 4556678899999999999999999999999999888765 68899999999999999999999999987 555553
Q ss_pred --HHHHHHHHHHHh--------CCHHHHHHHHHHHhhccChhhHHHH
Q 001481 360 --IHLFNARYKEQI--------GDTSAARAAFPESYIDSDSRFIEKV 396 (1071)
Q Consensus 360 --i~~~~a~~e~~~--------g~~~~A~~~~~~al~~~~p~~~~~w 396 (1071)
.++..+.++... |++++|+..|.+++ ...|++..++
T Consensus 107 ~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~-~~~p~~~~~~ 152 (235)
T TIGR03302 107 DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELI-RRYPNSEYAP 152 (235)
T ss_pred HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHH-HHCCCChhHH
Confidence 466666665544 77899999999998 5677665544
No 96
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.09 E-value=1.3e-06 Score=100.05 Aligned_cols=407 Identities=11% Similarity=0.062 Sum_probs=233.5
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-CCCHHHHHHHHHH
Q 001481 38 DEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSA-TYSVDVWFHYCSL 116 (1071)
Q Consensus 38 ~~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P~s~~lW~~~a~~e~~~~~~e~A~~lferAL~~~-P~s~~lW~~y~~~ 116 (1071)
.+|..+-.+ -+. +++++|.+...+.|...|+.....+.-+--.+..+.|++|.++.++-.... ..+.-+-..||.|
T Consensus 14 ~l~t~ln~~-~~~--~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Y 90 (652)
T KOG2376|consen 14 ALLTDLNRH-GKN--GEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEY 90 (652)
T ss_pred HHHHHHHHh-ccc--hHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHH
Confidence 556665553 334 899999999999999999998877776666778888999987776544322 1222356778877
Q ss_pred HHhhCCChhHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhccCCccHHHHHHHHHHHHHhHHHh
Q 001481 117 SMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAGAWKEE 196 (1071)
Q Consensus 117 ~~~~~~~~e~ar~l~erAL~~~~~~~~s~~lW~~yi~fe~~~~~~~~a~~iy~ral~~p~~~l~~~~~~~~~~~~~~~e~ 196 (1071)
-+ +..++|.+.++ |.+.....+-..++...-+.+++++|.+||+..++....+...-.. ..+
T Consensus 91 rl---nk~Dealk~~~------~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r------~nl--- 152 (652)
T KOG2376|consen 91 RL---NKLDEALKTLK------GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERR------ANL--- 152 (652)
T ss_pred Hc---ccHHHHHHHHh------cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHH------HHH---
Confidence 43 56777777776 3333334566777777788889999999999887643322111000 000
Q ss_pred hhhhchhhHHHHHHHhhcCCccCCcccchhhHHHhhhcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 001481 197 LECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRR 276 (1071)
Q Consensus 197 l~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~i~~~~d~~~~~~~a~~l~~~~~~~~~~y~~a~~~~~~~~~fE~ai~~ 276 (1071)
...+.. ...- ....
T Consensus 153 ------------------------------------------------------------~a~~a~-l~~~--~~q~--- 166 (652)
T KOG2376|consen 153 ------------------------------------------------------------LAVAAA-LQVQ--LLQS--- 166 (652)
T ss_pred ------------------------------------------------------------HHHHHh-hhHH--HHHh---
Confidence 000000 0000 0000
Q ss_pred cCcCCCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHhhcCC--------CC-------CHHHHHHHHHHHHhhCCHHH
Q 001481 277 PYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPC--------AD-------YPEFWMRYVDFMESKGGREI 341 (1071)
Q Consensus 277 ~~~~~~~~~p~~~~~W~~y~~~~~~~g~~~~a~~~yerAL~~~--------p~-------~~~lW~~ya~~l~~~g~~e~ 341 (1071)
+.....+..+..++.+..+...|+++.|++++++|+..| .. -..+...++.++...|+.++
T Consensus 167 ----v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~e 242 (652)
T KOG2376|consen 167 ----VPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAE 242 (652)
T ss_pred ----ccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHH
Confidence 001112345666666777777888888888888885322 11 12456677777888888888
Q ss_pred HHHHHHHHHHHhhccchHH------------------------------------------------HHHHHHHHHHhCC
Q 001481 342 ASYALDRATQIFLKRLPVI------------------------------------------------HLFNARYKEQIGD 373 (1071)
Q Consensus 342 A~~il~rAl~~~~~~~p~i------------------------------------------------~~~~a~~e~~~g~ 373 (1071)
|..+|...+.....+.|.. ....+.+..-.+.
T Consensus 243 a~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk 322 (652)
T KOG2376|consen 243 ASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNK 322 (652)
T ss_pred HHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 8888888776422222100 0000001111111
Q ss_pred HHHHHHHHHHHhhccCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCc-HHHHHHHHHHHHhhcCCHH
Q 001481 374 TSAARAAFPESYIDSDS-RFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTL-PLLYVQFSRLTYTTTGSAD 451 (1071)
Q Consensus 374 ~~~A~~~~~~al~~~~p-~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~-~~l~~~~A~~~~~~~g~~e 451 (1071)
-+.++++..+.- ...| ....+.+.-+...++. ....|..++..+.+. +|.. ..+.+..+.+.. ..|+++
T Consensus 323 ~~q~r~~~a~lp-~~~p~~~~~~ll~~~t~~~~~-~~~ka~e~L~~~~~~------~p~~s~~v~L~~aQl~i-s~gn~~ 393 (652)
T KOG2376|consen 323 MDQVRELSASLP-GMSPESLFPILLQEATKVREK-KHKKAIELLLQFADG------HPEKSKVVLLLRAQLKI-SQGNPE 393 (652)
T ss_pred HHHHHHHHHhCC-ccCchHHHHHHHHHHHHHHHH-HHhhhHHHHHHHhcc------CCchhHHHHHHHHHHHH-hcCCHH
Confidence 112222211111 1111 1122222222222222 445566666555554 5554 445666677777 899999
Q ss_pred HHHHHHHHHHhh-------CCChHHHHHHHHHHHHHcCCCCchhhHHHHHHHhhccCCcccccCChhhHHHHHHHHHHHH
Q 001481 452 NARDILIDGIKH-------VPNCKLLLEELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQQF 524 (1071)
Q Consensus 452 ~Ar~i~e~al~~-------~P~~~~lw~~~~~~e~~~g~~~~a~~~r~l~e~Al~~~~d~~~~l~~~~~~~lw~~~l~~~ 524 (1071)
.|.+++...+.. ..+.+.+.-....+..+.++...+ -+++..|+.--.+. .-....-..+|...+ .|
T Consensus 394 ~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a---~~vl~~Ai~~~~~~--~t~s~~l~~~~~~aa-~f 467 (652)
T KOG2376|consen 394 VALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSA---SAVLDSAIKWWRKQ--QTGSIALLSLMREAA-EF 467 (652)
T ss_pred HHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccH---HHHHHHHHHHHHHh--cccchHHHhHHHHHh-HH
Confidence 999999944421 222334444344444444555554 38888887532210 111123345777888 99
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCcc
Q 001481 525 LDLCGTIHDIRNAWNQHIKLFPHTVR 550 (1071)
Q Consensus 525 e~~~G~~e~a~~~~~ra~~~~p~~~~ 550 (1071)
+.++|+.+++...+++..+..|....
T Consensus 468 ~lr~G~~~ea~s~leel~k~n~~d~~ 493 (652)
T KOG2376|consen 468 KLRHGNEEEASSLLEELVKFNPNDTD 493 (652)
T ss_pred HHhcCchHHHHHHHHHHHHhCCchHH
Confidence 99999999999999999999988654
No 97
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.09 E-value=2.1e-06 Score=99.41 Aligned_cols=440 Identities=12% Similarity=0.064 Sum_probs=225.0
Q ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 001481 36 DFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCS 115 (1071)
Q Consensus 36 d~~~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P~s~~lW~~~a~~e~~~~~~e~A~~lferAL~~~P~s~~lW~~y~~ 115 (1071)
-...+.+.+..++. +.+.+..++.+..|+.+|...+..-..+-..-..|+.++|-....++++.++.|.--|-.|+-
T Consensus 7 E~~lF~~~lk~yE~---kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl 83 (700)
T KOG1156|consen 7 ENALFRRALKCYET---KQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGL 83 (700)
T ss_pred HHHHHHHHHHHHHH---HHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHH
Confidence 34455556665655 356666666666666777666655555555555566667777777777776666667766666
Q ss_pred HHHhhCCChhHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhccCCccHHHHHHHHHHHHH---h
Q 001481 116 LSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAG---A 192 (1071)
Q Consensus 116 ~~~~~~~~~e~ar~l~erAL~~~~~~~~s~~lW~~yi~fe~~~~~~~~a~~iy~ral~~p~~~l~~~~~~~~~~~~---~ 192 (1071)
+.+.. ++|++|.+.|..|++.-+. ...||....-+-...+.++-....-.+.+..-.. ....|..|..... +
T Consensus 84 ~~R~d-K~Y~eaiKcy~nAl~~~~d---N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~-~ra~w~~~Avs~~L~g~ 158 (700)
T KOG1156|consen 84 LQRSD-KKYDEAIKCYRNALKIEKD---NLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPS-QRASWIGFAVAQHLLGE 158 (700)
T ss_pred HHhhh-hhHHHHHHHHHHHHhcCCC---cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHH
Confidence 66655 6667777777777665433 3456666555555444444444443333332111 1222332222111 1
Q ss_pred HHHhhhhhchhhHHHHHHHhhcCCccCCcccchhhHHHhhhcCcchhHHHHH-HHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 001481 193 WKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSK-AIQKYRFIGE-QIYKEASQLDEKINCF 270 (1071)
Q Consensus 193 ~~e~l~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~i~~~~d~~~~~~~a~-~l~~~~~~~~-~~y~~a~~~~~~~~~f 270 (1071)
+..++. .+.+...... ..++..+.+. .. .++...+..+ +.++++. +.+...
T Consensus 159 y~~A~~--------il~ef~~t~~--~~~s~~~~e~--------------se~~Ly~n~i~~E~g~~q~al---e~L~~~ 211 (700)
T KOG1156|consen 159 YKMALE--------ILEEFEKTQN--TSPSKEDYEH--------------SELLLYQNQILIEAGSLQKAL---EHLLDN 211 (700)
T ss_pred HHHHHH--------HHHHHHHhhc--cCCCHHHHHH--------------HHHHHHHHHHHHHcccHHHHH---HHHHhh
Confidence 111110 1100000000 0011111100 00 0011100000 0111111 111222
Q ss_pred HHHhcccCcCCCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH-hhCCHHHHHHHHHHH
Q 001481 271 ENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFME-SKGGREIASYALDRA 349 (1071)
Q Consensus 271 E~ai~~~~~~~~~~~p~~~~~W~~y~~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~-~~g~~e~A~~il~rA 349 (1071)
|..+ -+.+..-...++++.+.+..++|..+|.+.+..+|++..-+..+-..+. -.+..+....+|.+.
T Consensus 212 e~~i-----------~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~l 280 (700)
T KOG1156|consen 212 EKQI-----------VDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAIL 280 (700)
T ss_pred hhHH-----------HHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 2221 1233444556778888999999999999999999999888888877775 223233333444444
Q ss_pred HHHhhccchHHHHHHHHHHHHhCCHHHHHHHHHHHhhc-cChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh----
Q 001481 350 TQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYID-SDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAA---- 424 (1071)
Q Consensus 350 l~~~~~~~p~i~~~~a~~e~~~g~~~~A~~~~~~al~~-~~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~---- 424 (1071)
-+.+.+...-..+- ..+. .| ++-+.++++.+.. +..+.+.++.....++.. ..++. +.++.+-.+.
T Consensus 281 s~~y~r~e~p~Rlp-lsvl--~~--eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~---p~k~~-~le~Lvt~y~~~L~ 351 (700)
T KOG1156|consen 281 SEKYPRHECPRRLP-LSVL--NG--EELKEIVDKYLRPLLSKGVPSVFKDLRSLYKD---PEKVA-FLEKLVTSYQHSLS 351 (700)
T ss_pred hhcCcccccchhcc-HHHh--Cc--chhHHHHHHHHHHHhhcCCCchhhhhHHHHhc---hhHhH-HHHHHHHHHHhhcc
Confidence 33211111101111 1111 11 3333333333210 011112222222222221 11111 3333222211
Q ss_pred hh---------ccCCCcHHHHHHH--HHHHHhhcCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCCCchhhHHHH
Q 001481 425 EQ---------RKFHTLPLLYVQF--SRLTYTTTGSADNARDILIDGIKHVPNCKLLLEELIKFTMVHGGRSHISIVDAV 493 (1071)
Q Consensus 425 ~~---------~~~p~~~~l~~~~--A~~~~~~~g~~e~Ar~i~e~al~~~P~~~~lw~~~~~~e~~~g~~~~a~~~r~l 493 (1071)
.. ...+..+.+|..+ +..+. ..|+++.|....+.|+..+|.-+++++.-+++....|+...+. ..
T Consensus 352 ~~~~f~~~D~~~~E~PttllWt~y~laqh~D-~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa---~~ 427 (700)
T KOG1156|consen 352 GTGMFNFLDDGKQEPPTTLLWTLYFLAQHYD-KLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAA---AW 427 (700)
T ss_pred cccCCCcccccccCCchHHHHHHHHHHHHHH-HcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHH---HH
Confidence 00 0124456666444 44444 8999999999999999999999999999999999999988875 88
Q ss_pred HHHhhccCCcccccCChhhHH-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 001481 494 ISNALYSRPDVLKVFSLEDVE-DISSLYLQQFLDLCGTIHDIRNAWNQHIKLF 545 (1071)
Q Consensus 494 ~e~Al~~~~d~~~~l~~~~~~-~lw~~~l~~~e~~~G~~e~a~~~~~ra~~~~ 545 (1071)
++.|...+ .+. .|-...+ ++..+...++.|.++.....+..
T Consensus 428 l~ea~elD----------~aDR~INsKcA-KYmLrAn~i~eA~~~~skFTr~~ 469 (700)
T KOG1156|consen 428 LDEAQELD----------TADRAINSKCA-KYMLRANEIEEAEEVLSKFTREG 469 (700)
T ss_pred HHHHHhcc----------chhHHHHHHHH-HHHHHccccHHHHHHHHHhhhcc
Confidence 88887542 222 2333566 77788888888888877666554
No 98
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.09 E-value=7.3e-07 Score=105.89 Aligned_cols=308 Identities=14% Similarity=0.157 Sum_probs=195.4
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhC--
Q 001481 44 LSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTF-- 121 (1071)
Q Consensus 44 i~~~~~~~~~~~~~a~~vyeraL~~~P~s~~lW~~~a~~e~~~~~~e~A~~lferAL~~~P~s~~lW~~y~~~~~~~~-- 121 (1071)
+.++... |++++|...++..-..+.+...+-...+++.++.|++++|..+|...|..+|.+.+.+..|...+.-..
T Consensus 11 ~~il~e~--g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 11 NSILEEA--GDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHHC--CCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhccc
Confidence 4445556 899999999999999999999999999999999999999999999999999999998888887762220
Q ss_pred --CChhHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHccCH-HHHHHHHHHHhc--cCCccHHHHHHHHHHHHHhHHHh
Q 001481 122 --EDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRW-SSLAQIFVQTLR--FPSKKLHHYYDSFKKLAGAWKEE 196 (1071)
Q Consensus 122 --~~~e~ar~l~erAL~~~~~~~~s~~lW~~yi~fe~~~~~~-~~a~~iy~ral~--~p~~~l~~~~~~~~~~~~~~~e~ 196 (1071)
++.+....+|+......|.. ..+=..-+.|.... .+ ..+.....+.+. +| .+|...+.+..
T Consensus 89 ~~~~~~~~~~~y~~l~~~yp~s---~~~~rl~L~~~~g~-~F~~~~~~yl~~~l~KgvP-----slF~~lk~Ly~----- 154 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKYPRS---DAPRRLPLDFLEGD-EFKERLDEYLRPQLRKGVP-----SLFSNLKPLYK----- 154 (517)
T ss_pred ccccHHHHHHHHHHHHHhCccc---cchhHhhcccCCHH-HHHHHHHHHHHHHHhcCCc-----hHHHHHHHHHc-----
Confidence 24556666776655554431 11100011111100 00 001111111111 11 00110000000
Q ss_pred hhhhchhhHHHHHHHhhcCCccCCcccchhhHHHhhhcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 001481 197 LECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRR 276 (1071)
Q Consensus 197 l~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~i~~~~d~~~~~~~a~~l~~~~~~~~~~y~~a~~~~~~~~~fE~ai~~ 276 (1071)
+.. +... +......|...++.
T Consensus 155 --------------------------------------d~~----K~~~-----------------i~~l~~~~~~~l~~ 175 (517)
T PF12569_consen 155 --------------------------------------DPE----KAAI-----------------IESLVEEYVNSLES 175 (517)
T ss_pred --------------------------------------Chh----HHHH-----------------HHHHHHHHHHhhcc
Confidence 000 0000 00111112222211
Q ss_pred c-CcCC---CCCChhHHHHHHHH--HHHHHHhCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 001481 277 P-YFHV---KPLDDIQLKNWHDY--LSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRAT 350 (1071)
Q Consensus 277 ~-~~~~---~~~~p~~~~~W~~y--~~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl 350 (1071)
. .+.. ....+...-+|..| +..+...|++++|..+.++||...|...++++.-|+++...|++++|...++.|.
T Consensus 176 ~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar 255 (517)
T PF12569_consen 176 NGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEAR 255 (517)
T ss_pred cCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 0 0110 11234444567555 6677789999999999999999999999999999999999999999999999999
Q ss_pred HHhhccchHHHHHHHHHHHHhCCHHHHHHHHHHHhhcc-Ch-----hhHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHH
Q 001481 351 QIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDS-DS-----RFIEKVT--FKANMERRLGNFVAACDTYKEALET 422 (1071)
Q Consensus 351 ~~~~~~~p~i~~~~a~~e~~~g~~~~A~~~~~~al~~~-~p-----~~~~~w~--~~a~le~~~g~~~~A~~~y~~Al~~ 422 (1071)
.+ ...+--+-...+.+..+.|++++|..++..-...- ++ +.--+|+ ..|..+.|.|++..|.+-|....+.
T Consensus 256 ~L-D~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 256 EL-DLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKH 334 (517)
T ss_pred hC-ChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 86 22222355556788999999999999887765321 22 1123465 4466788899999999999998888
Q ss_pred Hhhhc
Q 001481 423 AAEQR 427 (1071)
Q Consensus 423 ~~~~~ 427 (1071)
+....
T Consensus 335 f~~~~ 339 (517)
T PF12569_consen 335 FDDFE 339 (517)
T ss_pred HHHHh
Confidence 65443
No 99
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=99.08 E-value=4e-09 Score=119.21 Aligned_cols=150 Identities=15% Similarity=0.206 Sum_probs=125.4
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhcCC----------CcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHH
Q 001481 24 QGLEEFIAEGSLDFDEWTSLLSEIENSCP----------DDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVV 93 (1071)
Q Consensus 24 ~~le~al~~nP~d~~~W~~li~~~~~~~~----------~~~~~a~~vyeraL~~~P~s~~lW~~~a~~e~~~~~~e~A~ 93 (1071)
..|.+.|+.||.|+++|+.|+++-..... .-.+....+|++||+.+|++..+|+.|++...+..+.+++.
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 47999999999999999999997554311 12356778999999999999999999999999988999999
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhhC--CChhHHHHHHHHHHHhcCCCCC---------------chHHHHHHHHHHH
Q 001481 94 EVFERAVQSATYSVDVWFHYCSLSMSTF--EDPNDVRRLFKRALSFVGKDYL---------------CHTMWDKYIEFEI 156 (1071)
Q Consensus 94 ~lferAL~~~P~s~~lW~~y~~~~~~~~--~~~e~ar~l~erAL~~~~~~~~---------------s~~lW~~yi~fe~ 156 (1071)
+.++++|..+|.++.||..|++|..... -++++++.+|.++|..+..... ...|...++.|+.
T Consensus 86 ~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~ 165 (321)
T PF08424_consen 86 KKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLR 165 (321)
T ss_pred HHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998754 3688999999999997733211 1255566677888
Q ss_pred HccCHHHHHHHHHHHhc
Q 001481 157 SQQRWSSLAQIFVQTLR 173 (1071)
Q Consensus 157 ~~~~~~~a~~iy~ral~ 173 (1071)
..|..+.|..+++-.+.
T Consensus 166 ~aG~~E~Ava~~Qa~lE 182 (321)
T PF08424_consen 166 QAGYTERAVALWQALLE 182 (321)
T ss_pred HCCchHHHHHHHHHHHH
Confidence 88999999999887764
No 100
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.04 E-value=3.2e-09 Score=105.58 Aligned_cols=126 Identities=10% Similarity=-0.093 Sum_probs=109.3
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Q 001481 308 VVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYID 387 (1071)
Q Consensus 308 a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~~A~~~~~~al~~ 387 (1071)
-..+|++|+...|.+ |+.++..+...|++++|...|++++.+ .|.++.+|+..|.++...|++++|...|.+++ .
T Consensus 12 ~~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~-~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al-~ 86 (144)
T PRK15359 12 PEDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMA-QPWSWRAHIALAGTWMMLKEYTTAINFYGHAL-M 86 (144)
T ss_pred HHHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHH-h
Confidence 356888999887764 667888888999999999999999986 77777899999999999999999999999999 7
Q ss_pred cChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHH
Q 001481 388 SDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTY 444 (1071)
Q Consensus 388 ~~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~ 444 (1071)
++|++..+|+.++.++.+.|++++|+..|++|++. .|.++..|...|.+..
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~------~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM------SYADASWSEIRQNAQI 137 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCChHHHHHHHHHHH
Confidence 88999999999999999999999999999999998 7888888877776654
No 101
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.03 E-value=1.1e-08 Score=125.44 Aligned_cols=134 Identities=15% Similarity=0.035 Sum_probs=68.9
Q ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhccchHHHHHHHH
Q 001481 287 IQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNAR 366 (1071)
Q Consensus 287 ~~~~~W~~y~~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~ 366 (1071)
...+....+++.+...|.+++|..++++++..+|++..+++.++..+.+.+++++|+..+++++.. .|+++..++..|.
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~-~p~~~~~~~~~a~ 162 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG-GSSSAREILLEAK 162 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-CCCCHHHHHHHHH
Confidence 334444444555555555555555555555555555555555555555555555555555555543 4444445555555
Q ss_pred HHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001481 367 YKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALET 422 (1071)
Q Consensus 367 ~e~~~g~~~~A~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~ 422 (1071)
++...|++++|..+|++++ ...|+...+|+.++.++++.|..++|..+|++|++.
T Consensus 163 ~l~~~g~~~~A~~~y~~~~-~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 163 SWDEIGQSEQADACFERLS-RQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHhcchHHHHHHHHHHH-hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5555555555555555555 234444555555555555555555555555555554
No 102
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.02 E-value=1.2e-06 Score=101.02 Aligned_cols=175 Identities=13% Similarity=-0.048 Sum_probs=114.1
Q ss_pred ChhHHHHHHHHHHHHHHhCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhccch----HH
Q 001481 285 DDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLP----VI 360 (1071)
Q Consensus 285 ~p~~~~~W~~y~~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p----~i 360 (1071)
.|.....+..++..+...|++++|...|++++...|.+..++..++.++...|++++|+..+++++.. .+..+ ..
T Consensus 110 ~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~-~~~~~~~~~~~ 188 (355)
T cd05804 110 NPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDT-WDCSSMLRGHN 188 (355)
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhc-cCCCcchhHHH
Confidence 34445555566677788999999999999999999999999999999999999999999999999986 33223 24
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhhccCh-hhHHHHH-HHHH---HHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHH
Q 001481 361 HLFNARYKEQIGDTSAARAAFPESYIDSDS-RFIEKVT-FKAN---MERRLGNFVAACDTYKEALETAAEQRKFHTLPLL 435 (1071)
Q Consensus 361 ~~~~a~~e~~~g~~~~A~~~~~~al~~~~p-~~~~~w~-~~a~---le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l 435 (1071)
|..++.++...|++++|+.+|++++ ...+ ....... ..+. .....|..+.+... +.+.....+....+.....
T Consensus 189 ~~~la~~~~~~G~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w-~~~~~~~~~~~~~~~~~~~ 266 (355)
T cd05804 189 WWHLALFYLERGDYEAALAIYDTHI-APSAESDPALDLLDAASLLWRLELAGHVDVGDRW-EDLADYAAWHFPDHGLAFN 266 (355)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHh-ccccCCChHHHHhhHHHHHHHHHhcCCCChHHHH-HHHHHHHHhhcCcccchHH
Confidence 5567889999999999999999987 3333 1111111 1111 11222332222222 2222221111001222333
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHhh
Q 001481 436 YVQFSRLTYTTTGSADNARDILIDGIKH 463 (1071)
Q Consensus 436 ~~~~A~~~~~~~g~~e~Ar~i~e~al~~ 463 (1071)
.+..+.++. ..|+.+.|...++.....
T Consensus 267 ~~~~a~~~~-~~~~~~~a~~~L~~l~~~ 293 (355)
T cd05804 267 DLHAALALA-GAGDKDALDKLLAALKGR 293 (355)
T ss_pred HHHHHHHHh-cCCCHHHHHHHHHHHHHH
Confidence 345666665 788899998888887643
No 103
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.01 E-value=1.3e-08 Score=118.63 Aligned_cols=228 Identities=11% Similarity=-0.035 Sum_probs=188.0
Q ss_pred hhHHHHHHHHHHHHHHhCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhccchHHHHHHH
Q 001481 286 DIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNA 365 (1071)
Q Consensus 286 p~~~~~W~~y~~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a 365 (1071)
|....+=..+++.+.+.|-...|..+|+|. ..|-..+.+|...|...+|..+..+-++ .+..|.+|...+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LG 464 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLG 464 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhh
Confidence 344455567888888999999999999985 7899999999999999999998888776 466777888877
Q ss_pred HHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHh
Q 001481 366 RYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYT 445 (1071)
Q Consensus 366 ~~e~~~g~~~~A~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~ 445 (1071)
++.....-+++|.++++. .+.++-+.++....+.+++.++.+.|++.++. .|.....|+.+|.+..
T Consensus 465 Dv~~d~s~yEkawElsn~-------~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~------nplq~~~wf~~G~~AL- 530 (777)
T KOG1128|consen 465 DVLHDPSLYEKAWELSNY-------ISARAQRSLALLILSNKDFSEADKHLERSLEI------NPLQLGTWFGLGCAAL- 530 (777)
T ss_pred hhccChHHHHHHHHHhhh-------hhHHHHHhhccccccchhHHHHHHHHHHHhhc------CccchhHHHhccHHHH-
Confidence 665444444444444433 33455666666666789999999999999999 8999999999999988
Q ss_pred hcCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCCCchhhHHHHHHHhhccCCcccccCChhhHHHHHHHHHHHHH
Q 001481 446 TTGSADNARDILIDGIKHVPNCKLLLEELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQQFL 525 (1071)
Q Consensus 446 ~~g~~e~Ar~i~e~al~~~P~~~~lw~~~~~~e~~~g~~~~a~~~r~l~e~Al~~~~d~~~~l~~~~~~~lw~~~l~~~e 525 (1071)
.++++..|.+.|.+.+...|++.+.|.++...+.+.+...++ +..+.+|++.+. .+-.+|..|. -..
T Consensus 531 qlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra---~~~l~EAlKcn~---------~~w~iWENym-lvs 597 (777)
T KOG1128|consen 531 QLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRA---FRKLKEALKCNY---------QHWQIWENYM-LVS 597 (777)
T ss_pred HHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHH---HHHHHHHhhcCC---------CCCeeeechh-hhh
Confidence 999999999999999999999999999999999999988877 489999996542 4567899999 888
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCcc
Q 001481 526 DLCGTIHDIRNAWNQHIKLFPHTVR 550 (1071)
Q Consensus 526 ~~~G~~e~a~~~~~ra~~~~p~~~~ 550 (1071)
.+.|.+++|+.+|.|.+..-.++..
T Consensus 598 vdvge~eda~~A~~rll~~~~~~~d 622 (777)
T KOG1128|consen 598 VDVGEFEDAIKAYHRLLDLRKKYKD 622 (777)
T ss_pred hhcccHHHHHHHHHHHHHhhhhccc
Confidence 9999999999999999888766543
No 104
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.98 E-value=6.7e-07 Score=95.73 Aligned_cols=296 Identities=11% Similarity=0.016 Sum_probs=195.0
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc
Q 001481 24 QGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSA 103 (1071)
Q Consensus 24 ~~le~al~~nP~d~~~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P~s~~lW~~~a~~e~~~~~~e~A~~lferAL~~~ 103 (1071)
.-|-.+|+.||+++.+.++-+..|-.. |.-..+..-+.+.|+.-|+-...-+.-+.+.++.|.++.|..-|...|...
T Consensus 59 t~yHaAve~dp~~Y~aifrRaT~yLAm--Gksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~ 136 (504)
T KOG0624|consen 59 THYHAAVEGDPNNYQAIFRRATVYLAM--GKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHE 136 (504)
T ss_pred HHHHHHHcCCchhHHHHHHHHHHHhhh--cCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcC
Confidence 357789999999999999999988877 888888899999999999999999999999999999999999999999998
Q ss_pred CCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhccCCccHHHHH
Q 001481 104 TYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYY 183 (1071)
Q Consensus 104 P~s~~lW~~y~~~~~~~~~~~e~ar~l~erAL~~~~~~~~s~~lW~~yi~fe~~~~~~~~a~~iy~ral~~p~~~l~~~~ 183 (1071)
|.+...-..+-++.. +++-+.+-..++...+ .|+...++......|.+-. |..
T Consensus 137 ~s~~~~~eaqskl~~-----~~e~~~l~~ql~s~~~------------------~GD~~~ai~~i~~llEi~~---Wda- 189 (504)
T KOG0624|consen 137 PSNGLVLEAQSKLAL-----IQEHWVLVQQLKSASG------------------SGDCQNAIEMITHLLEIQP---WDA- 189 (504)
T ss_pred CCcchhHHHHHHHHh-----HHHHHHHHHHHHHHhc------------------CCchhhHHHHHHHHHhcCc---chh-
Confidence 865544444333322 1223333333333322 1233344444444443210 100
Q ss_pred HHHHHHHHhHHHhhhhhchhhHHHHHHHhhcCCccCCcccchhhHHHhhhcCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001481 184 DSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQL 263 (1071)
Q Consensus 184 ~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~i~~~~d~~~~~~~a~~l~~~~~~~~~~y~~a~~~ 263 (1071)
.+... +..+|.+-.+.
T Consensus 190 -~l~~~---------------------------------------------------------------Rakc~i~~~e~ 205 (504)
T KOG0624|consen 190 -SLRQA---------------------------------------------------------------RAKCYIAEGEP 205 (504)
T ss_pred -HHHHH---------------------------------------------------------------HHHHHHhcCcH
Confidence 00000 00001000000
Q ss_pred HHHHHHHHHHhcccCcCCCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHH----------
Q 001481 264 DEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFM---------- 333 (1071)
Q Consensus 264 ~~~~~~fE~ai~~~~~~~~~~~p~~~~~W~~y~~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l---------- 333 (1071)
..++.....+ ..+.-++-+...+...++-..|+.+.+....+.||+.+|++-..+-.|-++-
T Consensus 206 k~AI~Dlk~a--------skLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e 277 (504)
T KOG0624|consen 206 KKAIHDLKQA--------SKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAE 277 (504)
T ss_pred HHHHHHHHHH--------HhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 0111111111 1133455567777777777889999999999999999998876665554331
Q ss_pred --HhhCCHHHHHHHHHHHHHHhhccchH----HHHHHHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcC
Q 001481 334 --ESKGGREIASYALDRATQIFLKRLPV----IHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLG 407 (1071)
Q Consensus 334 --~~~g~~e~A~~il~rAl~~~~~~~p~----i~~~~a~~e~~~g~~~~A~~~~~~al~~~~p~~~~~w~~~a~le~~~g 407 (1071)
.+.+++.++.+..++.++. .|..+. ++...+.+...-+++-+|+....+++ .++|+++.+++..+..+.-..
T Consensus 278 ~~ie~~~~t~cle~ge~vlk~-ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL-~~d~~dv~~l~dRAeA~l~dE 355 (504)
T KOG0624|consen 278 QAIEEKHWTECLEAGEKVLKN-EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVL-DIDPDDVQVLCDRAEAYLGDE 355 (504)
T ss_pred HHHhhhhHHHHHHHHHHHHhc-CCcccceeeeeeheeeecccccCCHHHHHHHHHHHH-hcCchHHHHHHHHHHHHhhhH
Confidence 2223455566666665553 333222 22333455667889999999999999 889999999999999888888
Q ss_pred CHHHHHHHHHHHHHH
Q 001481 408 NFVAACDTYKEALET 422 (1071)
Q Consensus 408 ~~~~A~~~y~~Al~~ 422 (1071)
.+|.|+.-|++|.+.
T Consensus 356 ~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 356 MYDDAIHDYEKALEL 370 (504)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999999987
No 105
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.98 E-value=2e-08 Score=105.34 Aligned_cols=116 Identities=13% Similarity=0.112 Sum_probs=57.9
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhccchHHHHHHHHHH-HHhCC--HHHHHHHH
Q 001481 305 FDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYK-EQIGD--TSAARAAF 381 (1071)
Q Consensus 305 ~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e-~~~g~--~~~A~~~~ 381 (1071)
.++++..|++++..+|++.+.|+.++.++...|++++|...|++|+.+ .|+++.++..+|.++ ...|+ .++|+.+|
T Consensus 55 ~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l-~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l 133 (198)
T PRK10370 55 PEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQL-RGENAELYAALATVLYYQAGQHMTPQTREMI 133 (198)
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence 444555555555555555555555555555555555555555555543 444444555544432 33333 24555555
Q ss_pred HHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001481 382 PESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALET 422 (1071)
Q Consensus 382 ~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~ 422 (1071)
++++ ..+|++..+++.++..+.+.|++++|+..|+++++.
T Consensus 134 ~~al-~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 134 DKAL-ALDANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHH-HhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5554 344444555555554444455555555555555444
No 106
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.97 E-value=1.4e-08 Score=107.59 Aligned_cols=206 Identities=10% Similarity=-0.013 Sum_probs=171.0
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhccchHHHHHHHHHH
Q 001481 289 LKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYK 368 (1071)
Q Consensus 289 ~~~W~~y~~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e 368 (1071)
++.+.-+...+.+...+.+|..+|...|+.+|.+..+....+.+++..+..++|.++|+++++....+...|-+. +.-+
T Consensus 256 ~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAci-a~~y 334 (478)
T KOG1129|consen 256 PDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACI-AVGY 334 (478)
T ss_pred hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeee-eecc
Confidence 456777777788888999999999999999999999999999999999999999999999998622122211111 1112
Q ss_pred HHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhhcC
Q 001481 369 EQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTG 448 (1071)
Q Consensus 369 ~~~g~~~~A~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~g 448 (1071)
.-.++.+-|...|.+.+ .+--.+.+++++.+-+..-.+.+|-+...|.+|+..... .....++|+++|.+.. ..|
T Consensus 335 fY~~~PE~AlryYRRiL-qmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~---~~~aaDvWYNlg~vaV-~iG 409 (478)
T KOG1129|consen 335 FYDNNPEMALRYYRRIL-QMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQ---PGQAADVWYNLGFVAV-TIG 409 (478)
T ss_pred ccCCChHHHHHHHHHHH-HhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccC---cchhhhhhhccceeEE-ecc
Confidence 23678999999999998 555667888998888777789999999999999998432 2335789999999987 999
Q ss_pred CHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCCCchhhHHHHHHHhhccCCc
Q 001481 449 SADNARDILIDGIKHVPNCKLLLEELIKFTMVHGGRSHISIVDAVISNALYSRPD 503 (1071)
Q Consensus 449 ~~e~Ar~i~e~al~~~P~~~~lw~~~~~~e~~~g~~~~a~~~r~l~e~Al~~~~d 503 (1071)
|+.-|..+|.-+|..++++.+.+.+++-++...|+...++ +++..|-+..|+
T Consensus 410 D~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Ar---sll~~A~s~~P~ 461 (478)
T KOG1129|consen 410 DFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGAR---SLLNAAKSVMPD 461 (478)
T ss_pred chHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHH---HHHHHhhhhCcc
Confidence 9999999999999999999999999999999999998874 999999877773
No 107
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.95 E-value=1.7e-08 Score=105.87 Aligned_cols=110 Identities=12% Similarity=0.086 Sum_probs=98.8
Q ss_pred CCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHH-HhhCC--HHHHHHHHHHHHHHhhccc
Q 001481 281 VKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFM-ESKGG--REIASYALDRATQIFLKRL 357 (1071)
Q Consensus 281 ~~~~~p~~~~~W~~y~~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l-~~~g~--~e~A~~il~rAl~~~~~~~ 357 (1071)
....+|++.+.|..++..+...|+++.|...|++|+...|++..+|..+|..+ ...|+ .++|+.+|+++++. .|++
T Consensus 65 ~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~-dP~~ 143 (198)
T PRK10370 65 KIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALAL-DANE 143 (198)
T ss_pred HHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh-CCCC
Confidence 44578999999999999999999999999999999999999999999999965 66676 59999999999997 7888
Q ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHhhccChh
Q 001481 358 PVIHLFNARYKEQIGDTSAARAAFPESYIDSDSR 391 (1071)
Q Consensus 358 p~i~~~~a~~e~~~g~~~~A~~~~~~al~~~~p~ 391 (1071)
+.+++.+|..+.+.|++++|+..|+++++...|+
T Consensus 144 ~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~ 177 (198)
T PRK10370 144 VTALMLLASDAFMQADYAQAIELWQKVLDLNSPR 177 (198)
T ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 8999999999999999999999999999443443
No 108
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.94 E-value=6.3e-08 Score=119.56 Aligned_cols=134 Identities=12% Similarity=-0.019 Sum_probs=89.1
Q ss_pred CChhHHHHHHHHHHHHHHhCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhccch-----
Q 001481 284 LDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLP----- 358 (1071)
Q Consensus 284 ~~p~~~~~W~~y~~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p----- 358 (1071)
.+|.+..+|..++..+...++++.|..+++.++..+|+...+|+..|.++...+.++.+..+ +++.++..+..
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve 103 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVE 103 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHH
Confidence 56889999999999999999999999999999999999999999999999999988777766 66665332221
Q ss_pred -------------HHHHHHHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001481 359 -------------VIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALE 421 (1071)
Q Consensus 359 -------------~i~~~~a~~e~~~g~~~~A~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~ 421 (1071)
.+++.+|.++.+.|+.++|..+|++++ +.+|+++.+...+|.++... ++++|+.++.+|+.
T Consensus 104 ~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L-~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~ 177 (906)
T PRK14720 104 HICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLV-KADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIY 177 (906)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHH-hcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHH
Confidence 223333344444444444444444444 34444444444444444444 44444444444443
No 109
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.94 E-value=4.2e-08 Score=106.29 Aligned_cols=169 Identities=12% Similarity=-0.005 Sum_probs=136.7
Q ss_pred CCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhccch---HHHHHHHHHHHHhCCHHHHHHHHHHHhhccChhhHH-
Q 001481 319 CADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLP---VIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIE- 394 (1071)
Q Consensus 319 ~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p---~i~~~~a~~e~~~g~~~~A~~~~~~al~~~~p~~~~- 394 (1071)
.....+.++..+..+...|+++.|+..|++++.. .|..+ .+|+..+.++...|++++|+..|++++ ...|++..
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~-~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l-~~~p~~~~~ 106 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESR-YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFI-RLHPNHPDA 106 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HHCcCCCch
Confidence 3566789999999999999999999999999986 55544 577888999999999999999999999 56665544
Q ss_pred --HHHHHHHHHHHc--------CCHHHHHHHHHHHHHHHhhhccCCCcHHHH-----------------HHHHHHHHhhc
Q 001481 395 --KVTFKANMERRL--------GNFVAACDTYKEALETAAEQRKFHTLPLLY-----------------VQFSRLTYTTT 447 (1071)
Q Consensus 395 --~w~~~a~le~~~--------g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~-----------------~~~A~~~~~~~ 447 (1071)
+|+..+.+.... |+++.|++.|+++++. .|.....+ ..+|.++. ..
T Consensus 107 ~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~------~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~-~~ 179 (235)
T TIGR03302 107 DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR------YPNSEYAPDAKKRMDYLRNRLAGKELYVARFYL-KR 179 (235)
T ss_pred HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH------CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hc
Confidence 577777766654 7889999999999998 55544332 35566666 88
Q ss_pred CCHHHHHHHHHHHHhhCCCh---HHHHHHHHHHHHHcCCCCchhhHHHHHHHhhc
Q 001481 448 GSADNARDILIDGIKHVPNC---KLLLEELIKFTMVHGGRSHISIVDAVISNALY 499 (1071)
Q Consensus 448 g~~e~Ar~i~e~al~~~P~~---~~lw~~~~~~e~~~g~~~~a~~~r~l~e~Al~ 499 (1071)
|++.+|...|+++++.+|++ ...|...+..+...|+.+++. .+++....
T Consensus 180 g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~---~~~~~l~~ 231 (235)
T TIGR03302 180 GAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQ---DAAAVLGA 231 (235)
T ss_pred CChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHH---HHHHHHHh
Confidence 99999999999999998864 578999999999999998875 56666543
No 110
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.93 E-value=2e-07 Score=99.43 Aligned_cols=203 Identities=11% Similarity=-0.001 Sum_probs=93.1
Q ss_pred CChhHHHHHHHHHHHHHHhCCHHHHHHHHHHhhcCCCCC-----HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhccch
Q 001481 284 LDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADY-----PEFWMRYVDFMESKGGREIASYALDRATQIFLKRLP 358 (1071)
Q Consensus 284 ~~p~~~~~W~~y~~~~~~~g~~~~a~~~yerAL~~~p~~-----~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p 358 (1071)
.+|..+++-..++.++.+.|..++|+.+....+.. |+. .-+...++.-|...|-+|.|..+|...+.. ....+
T Consensus 64 ~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de-~efa~ 141 (389)
T COG2956 64 EDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDE-GEFAE 141 (389)
T ss_pred cCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcc-hhhhH
Confidence 44444455555555555555555555544443321 111 123334444444445455555555444331 00011
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHhhccCh-----hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcH
Q 001481 359 VIHLFNARYKEQIGDTSAARAAFPESYIDSDS-----RFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLP 433 (1071)
Q Consensus 359 ~i~~~~a~~e~~~g~~~~A~~~~~~al~~~~p-----~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~ 433 (1071)
...-.+..++....++++|.++-++.. .+.+ ..+..|+.++.-+.-..++++|+.++++|+.. ++.+.
T Consensus 142 ~AlqqLl~IYQ~treW~KAId~A~~L~-k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa------~~~cv 214 (389)
T COG2956 142 GALQQLLNIYQATREWEKAIDVAERLV-KLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQA------DKKCV 214 (389)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHH-HcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh------Cccce
Confidence 222333344444445555555544443 2221 12233444444444445555555555555555 45555
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCChH-HHHHHHHHHHHHcCCCCchhhHHHHHHHhhc
Q 001481 434 LLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCK-LLLEELIKFTMVHGGRSHISIVDAVISNALY 499 (1071)
Q Consensus 434 ~l~~~~A~~~~~~~g~~e~Ar~i~e~al~~~P~~~-~lw~~~~~~e~~~g~~~~a~~~r~l~e~Al~ 499 (1071)
.+-+.+|+++. ..|++.+|.+.|++.++.+|... ++...+...+...|...+.. ..+.++..
T Consensus 215 RAsi~lG~v~~-~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~---~fL~~~~~ 277 (389)
T COG2956 215 RASIILGRVEL-AKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGL---NFLRRAME 277 (389)
T ss_pred ehhhhhhHHHH-hccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHH---HHHHHHHH
Confidence 55555555555 55555555555555555555532 33444444444455544432 44444443
No 111
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.93 E-value=4.7e-08 Score=102.24 Aligned_cols=176 Identities=11% Similarity=0.104 Sum_probs=152.4
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Q 001481 308 VVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYID 387 (1071)
Q Consensus 308 a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~~A~~~~~~al~~ 387 (1071)
+...+-+....+|.+..+ ..++..+...|+-+.+..+...+... .+.++.+...+++...+.|++..|...+.++. .
T Consensus 52 a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~-~ 128 (257)
T COG5010 52 AAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAA-R 128 (257)
T ss_pred HHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHh-c
Confidence 444555556678999999 99999999999888888888776653 55666777779999999999999999999998 8
Q ss_pred cChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCh
Q 001481 388 SDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNC 467 (1071)
Q Consensus 388 ~~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~~~P~~ 467 (1071)
+.|+.+++|+..+..+.+.|+++.|+..|.+|+++ ++..+.++.++|..+. ..||++.|++++..+...-+.+
T Consensus 129 l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L------~~~~p~~~nNlgms~~-L~gd~~~A~~lll~a~l~~~ad 201 (257)
T COG5010 129 LAPTDWEAWNLLGAALDQLGRFDEARRAYRQALEL------APNEPSIANNLGMSLL-LRGDLEDAETLLLPAYLSPAAD 201 (257)
T ss_pred cCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHh------ccCCchhhhhHHHHHH-HcCCHHHHHHHHHHHHhCCCCc
Confidence 89999999999999999999999999999999999 8999999999999998 9999999999999998777778
Q ss_pred HHHHHHHHHHHHHcCCCCchhhHHHHHHH
Q 001481 468 KLLLEELIKFTMVHGGRSHISIVDAVISN 496 (1071)
Q Consensus 468 ~~lw~~~~~~e~~~g~~~~a~~~r~l~e~ 496 (1071)
..+-.+++......|++..++ ++...
T Consensus 202 ~~v~~NLAl~~~~~g~~~~A~---~i~~~ 227 (257)
T COG5010 202 SRVRQNLALVVGLQGDFREAE---DIAVQ 227 (257)
T ss_pred hHHHHHHHHHHhhcCChHHHH---hhccc
Confidence 888888888888889887764 55444
No 112
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.89 E-value=1.7e-07 Score=96.99 Aligned_cols=165 Identities=18% Similarity=0.056 Sum_probs=139.9
Q ss_pred HHHHhCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhCCHHHH
Q 001481 298 FAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAA 377 (1071)
Q Consensus 298 ~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~~A 377 (1071)
.....|..+.|..++.+....+|.+..+-..+|.+++..|.+++|.++|++.++- .|.+..++-.-..+....|+.-+|
T Consensus 61 AAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d-dpt~~v~~KRKlAilka~GK~l~a 139 (289)
T KOG3060|consen 61 AALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLED-DPTDTVIRKRKLAILKAQGKNLEA 139 (289)
T ss_pred HHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc-CcchhHHHHHHHHHHHHcCCcHHH
Confidence 3345688889999999988888999999999999999999999999999999874 333334555555566678888889
Q ss_pred HHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhhcC---CHHHHH
Q 001481 378 RAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTG---SADNAR 454 (1071)
Q Consensus 378 ~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~g---~~e~Ar 454 (1071)
++.+...+ +..+...++|..++.++...|++++|.-||++.+-. .|.++.++..+|.+++ ..| ++.-||
T Consensus 140 Ik~ln~YL-~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~------~P~n~l~f~rlae~~Y-t~gg~eN~~~ar 211 (289)
T KOG3060|consen 140 IKELNEYL-DKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI------QPFNPLYFQRLAEVLY-TQGGAENLELAR 211 (289)
T ss_pred HHHHHHHH-HHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc------CCCcHHHHHHHHHHHH-HHhhHHHHHHHH
Confidence 88888888 567788999999999999999999999999999988 8999999999999988 444 467899
Q ss_pred HHHHHHHhhCCChHHHH
Q 001481 455 DILIDGIKHVPNCKLLL 471 (1071)
Q Consensus 455 ~i~e~al~~~P~~~~lw 471 (1071)
+.|+++|+.+|.+...|
T Consensus 212 kyy~~alkl~~~~~ral 228 (289)
T KOG3060|consen 212 KYYERALKLNPKNLRAL 228 (289)
T ss_pred HHHHHHHHhChHhHHHH
Confidence 99999999999655433
No 113
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.85 E-value=8.9e-07 Score=109.60 Aligned_cols=159 Identities=16% Similarity=0.120 Sum_probs=113.4
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhcCCCC
Q 001481 63 DSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDY 142 (1071)
Q Consensus 63 eraL~~~P~s~~lW~~~a~~e~~~~~~e~A~~lferAL~~~P~s~~lW~~y~~~~~~~~~~~e~ar~l~erAL~~~~~~~ 142 (1071)
.-+..+.|.+.+.|..++..+...+++++|..+++.+++..|.++.+|+..+-++... +.+.++..+ +++...+.+.
T Consensus 21 ~~~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~-~~~~~~~lv--~~l~~~~~~~ 97 (906)
T PRK14720 21 ADANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSR-RPLNDSNLL--NLIDSFSQNL 97 (906)
T ss_pred cccccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhh-cchhhhhhh--hhhhhccccc
Confidence 3445678889999999999998889999999999999999999999888777755554 444443333 3333222210
Q ss_pred CchHHHHHHHHHHHHccCHHHHHHHHHHHhccCCccHHHHHHHHHHHHHhHHHhhhhhchhhHHHHHHHhhcCCccCCcc
Q 001481 143 LCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYK 222 (1071)
Q Consensus 143 ~s~~lW~~yi~fe~~~~~~~~a~~iy~ral~~p~~~l~~~~~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~l~~~~~ 222 (1071)
++..+..++.+.+.
T Consensus 98 -----------------~~~~ve~~~~~i~~------------------------------------------------- 111 (906)
T PRK14720 98 -----------------KWAIVEHICDKILL------------------------------------------------- 111 (906)
T ss_pred -----------------chhHHHHHHHHHHh-------------------------------------------------
Confidence 00000000000000
Q ss_pred cchhhHHHhhhcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCCCCCChhHHHHHHHHHHHHHHh
Q 001481 223 DDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQ 302 (1071)
Q Consensus 223 ~~e~~~~i~~~~d~~~~~~~a~~l~~~~~~~~~~y~~a~~~~~~~~~fE~ai~~~~~~~~~~~p~~~~~W~~y~~~~~~~ 302 (1071)
.+++..+...++.++.+.
T Consensus 112 --------------------------------------------------------------~~~~k~Al~~LA~~Ydk~ 129 (906)
T PRK14720 112 --------------------------------------------------------------YGENKLALRTLAEAYAKL 129 (906)
T ss_pred --------------------------------------------------------------hhhhhHHHHHHHHHHHHc
Confidence 011122555667788889
Q ss_pred CCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHh
Q 001481 303 GDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIF 353 (1071)
Q Consensus 303 g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~ 353 (1071)
|+.+++..+|+++|..+|++..+...||.++... ++++|+..+.+|+..+
T Consensus 130 g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~ 179 (906)
T PRK14720 130 NENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRF 179 (906)
T ss_pred CChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998 9999999999999863
No 114
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.84 E-value=2.5e-05 Score=86.27 Aligned_cols=320 Identities=12% Similarity=0.074 Sum_probs=187.0
Q ss_pred HHHHHHHhCCCCHHHHHHHHH----------HHHhcCCCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHHH
Q 001481 25 GLEEFIAEGSLDFDEWTSLLS----------EIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVE 94 (1071)
Q Consensus 25 ~le~al~~nP~d~~~W~~li~----------~~~~~~~~~~~~a~~vyeraL~~~P~s~~lW~~~a~~e~~~~~~e~A~~ 94 (1071)
.+-+.|-.-|.....|++.-. -+.+..+|++.+|.+...+.-+.-+...-..+..++..-..|+++.+..
T Consensus 60 ~~l~~v~~~~~~~~~w~~~rKrrra~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~ 139 (400)
T COG3071 60 WLLRRVLRTPAHTRGWFSRRKRRRARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANR 139 (400)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHH
Confidence 344556667878888887322 2233456899999999999888888888778888888888899999999
Q ss_pred HHHHHHHhcCCC-HHHHHHHHHHHHhhCCChhHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhc
Q 001481 95 VFERAVQSATYS-VDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLR 173 (1071)
Q Consensus 95 lferAL~~~P~s-~~lW~~y~~~~~~~~~~~e~ar~l~erAL~~~~~~~~s~~lW~~yi~fe~~~~~~~~a~~iy~ral~ 173 (1071)
.+.++-+.-+.+ ...-+.-++..+.. +++..|+.-.+.+++..|.+ ..+-....+.....|++..+-++..+.-+
T Consensus 140 yL~eaae~~~~~~l~v~ltrarlll~~-~d~~aA~~~v~~ll~~~pr~---~~vlrLa~r~y~~~g~~~~ll~~l~~L~k 215 (400)
T COG3071 140 YLAEAAELAGDDTLAVELTRARLLLNR-RDYPAARENVDQLLEMTPRH---PEVLRLALRAYIRLGAWQALLAILPKLRK 215 (400)
T ss_pred HHHHHhccCCCchHHHHHHHHHHHHhC-CCchhHHHHHHHHHHhCcCC---hHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 999998883322 23445556666666 88899999999888876654 33444444444444554444444333322
Q ss_pred cCCccHHHHHHHHHHHHHhHHHhhhhhchhhHHHHHHHhhcCCccCCcccchhhHHHhhhcCcchhHHHHHHHHHHHHHH
Q 001481 174 FPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIG 253 (1071)
Q Consensus 174 ~p~~~l~~~~~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~i~~~~d~~~~~~~a~~l~~~~~~~ 253 (1071)
.-..+ ...+..++.+
T Consensus 216 a~~l~-~~e~~~le~~---------------------------------------------------------------- 230 (400)
T COG3071 216 AGLLS-DEEAARLEQQ---------------------------------------------------------------- 230 (400)
T ss_pred ccCCC-hHHHHHHHHH----------------------------------------------------------------
Confidence 10000 0000000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccCcCCCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 001481 254 EQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFM 333 (1071)
Q Consensus 254 ~~~y~~a~~~~~~~~~fE~ai~~~~~~~~~~~p~~~~~W~~y~~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l 333 (1071)
.|....+-....+..+......+..-.....++.+-..|+..+
T Consensus 231 -------------------------------------a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~l 273 (400)
T COG3071 231 -------------------------------------AWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERL 273 (400)
T ss_pred -------------------------------------HHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHH
Confidence 0000000000000011111111111111234456666777777
Q ss_pred HhhCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHH
Q 001481 334 ESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAAC 413 (1071)
Q Consensus 334 ~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~~A~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~ 413 (1071)
+..|+.++|.++.+.+++. -.++.+...+.. .+-++...-.+..++.+ .-.|+.+.+|+.++.++.+.+.+.+|.
T Consensus 274 i~l~~~~~A~~~i~~~Lk~--~~D~~L~~~~~~--l~~~d~~~l~k~~e~~l-~~h~~~p~L~~tLG~L~~k~~~w~kA~ 348 (400)
T COG3071 274 IRLGDHDEAQEIIEDALKR--QWDPRLCRLIPR--LRPGDPEPLIKAAEKWL-KQHPEDPLLLSTLGRLALKNKLWGKAS 348 (400)
T ss_pred HHcCChHHHHHHHHHHHHh--ccChhHHHHHhh--cCCCCchHHHHHHHHHH-HhCCCChhHHHHHHHHHHHhhHHHHHH
Confidence 7777777777777777763 123332211111 13455556666666666 335666677777777777777777888
Q ss_pred HHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhh
Q 001481 414 DTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKH 463 (1071)
Q Consensus 414 ~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~~ 463 (1071)
..|+.|++. .....-|..+|..+. ..|+..+|-++++.++..
T Consensus 349 ~~leaAl~~-------~~s~~~~~~la~~~~-~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 349 EALEAALKL-------RPSASDYAELADALD-QLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHHHHhc-------CCChhhHHHHHHHHH-HcCChHHHHHHHHHHHHH
Confidence 888777775 344566677777776 778888887777777743
No 115
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.84 E-value=6.1e-08 Score=95.19 Aligned_cols=121 Identities=17% Similarity=-0.046 Sum_probs=91.6
Q ss_pred HHHHHHHHhhccchHHHHHHHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q 001481 345 ALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAA 424 (1071)
Q Consensus 345 il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~~A~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~ 424 (1071)
.|++++.. .|....+.+.++.++...|++++|...|++++ ...|++..+|..++.++...|++++|+.+|+++++.
T Consensus 5 ~~~~~l~~-~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~-~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-- 80 (135)
T TIGR02552 5 TLKDLLGL-DSEQLEQIYALAYNLYQQGRYDEALKLFQLLA-AYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL-- 80 (135)
T ss_pred hHHHHHcC-ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHH-HhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--
Confidence 45666654 44444556666667777778888888888777 567777888888888888888888888888888887
Q ss_pred hhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCChHHHHHHH
Q 001481 425 EQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLLLEEL 474 (1071)
Q Consensus 425 ~~~~~p~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~~~P~~~~lw~~~ 474 (1071)
.|.++.+|..+|.++. ..|++++|.+.|+++++.+|++..++...
T Consensus 81 ----~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 125 (135)
T TIGR02552 81 ----DPDDPRPYFHAAECLL-ALGEPESALKALDLAIEICGENPEYSELK 125 (135)
T ss_pred ----CCCChHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhccccchHHHHH
Confidence 6777888888888887 88888888888888888888777655433
No 116
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.83 E-value=6.3e-08 Score=113.01 Aligned_cols=194 Identities=11% Similarity=-0.011 Sum_probs=165.3
Q ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhccchHHHHHHHH
Q 001481 287 IQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNAR 366 (1071)
Q Consensus 287 ~~~~~W~~y~~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~ 366 (1071)
..+..|-..+.++...|+...|..+..+-++ .+.++.+|..++++.... .+|++|.++....+..+...++.
T Consensus 422 Erlemw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~-------s~yEkawElsn~~sarA~r~~~~ 493 (777)
T KOG1128|consen 422 ERLEMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDP-------SLYEKAWELSNYISARAQRSLAL 493 (777)
T ss_pred HhHHHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccCh-------HHHHHHHHHhhhhhHHHHHhhcc
Confidence 4567999999999999999999998888888 677788888888877654 45666666533334445555666
Q ss_pred HHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhh
Q 001481 367 YKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTT 446 (1071)
Q Consensus 367 ~e~~~g~~~~A~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~ 446 (1071)
...+.++|+++.+.|++.+ +++|-....|+.++-+....++...|.++|.+++.+ .|.....|.+++..+. +
T Consensus 494 ~~~~~~~fs~~~~hle~sl-~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL------~Pd~~eaWnNls~ayi-~ 565 (777)
T KOG1128|consen 494 LILSNKDFSEADKHLERSL-EINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL------EPDNAEAWNNLSTAYI-R 565 (777)
T ss_pred ccccchhHHHHHHHHHHHh-hcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhc------CCCchhhhhhhhHHHH-H
Confidence 6666899999999999999 889999999999999999999999999999999999 8999999999999998 9
Q ss_pred cCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCCCchhhHHHHHHHhhc
Q 001481 447 TGSADNARDILIDGIKHVPNCKLLLEELIKFTMVHGGRSHISIVDAVISNALY 499 (1071)
Q Consensus 447 ~g~~e~Ar~i~e~al~~~P~~~~lw~~~~~~e~~~g~~~~a~~~r~l~e~Al~ 499 (1071)
.|+..+|+.++.+|++.+-.+..+|.+|.-+....|.++.+- ..+.+.+.
T Consensus 566 ~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~---~A~~rll~ 615 (777)
T KOG1128|consen 566 LKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAI---KAYHRLLD 615 (777)
T ss_pred HhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHH---HHHHHHHH
Confidence 999999999999999999889999999999999999988874 55665553
No 117
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.82 E-value=6.8e-06 Score=97.75 Aligned_cols=139 Identities=17% Similarity=0.082 Sum_probs=109.7
Q ss_pred CCHHHHHH--HHHHHHhhCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHH
Q 001481 321 DYPEFWMR--YVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTF 398 (1071)
Q Consensus 321 ~~~~lW~~--ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~~A~~~~~~al~~~~p~~~~~w~~ 398 (1071)
-...+|.. +|..+...|++++|..++++|+.. .|..+++++.-|+++...|++.+|...++.|. .++...--+=.+
T Consensus 190 p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h-tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar-~LD~~DRyiNsK 267 (517)
T PF12569_consen 190 PSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH-TPTLVELYMTKARILKHAGDLKEAAEAMDEAR-ELDLADRYINSK 267 (517)
T ss_pred chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH-hCChhhHHHHHH
Confidence 34456754 488888999999999999999996 78888999999999999999999999999998 677665555667
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcH----HHH--HHHHHHHHhhcCCHHHHHHHHHHHHhhCC
Q 001481 399 KANMERRLGNFVAACDTYKEALETAAEQRKFHTLP----LLY--VQFSRLTYTTTGSADNARDILIDGIKHVP 465 (1071)
Q Consensus 399 ~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~----~l~--~~~A~~~~~~~g~~e~Ar~i~e~al~~~P 465 (1071)
.+....|.|.+++|++++...... +.....+. -+| +..|..+. +.|++..|.+.|...++.+-
T Consensus 268 ~aKy~LRa~~~e~A~~~~~~Ftr~---~~~~~~~L~~mQc~Wf~~e~a~a~~-r~~~~~~ALk~~~~v~k~f~ 336 (517)
T PF12569_consen 268 CAKYLLRAGRIEEAEKTASLFTRE---DVDPLSNLNDMQCMWFETECAEAYL-RQGDYGLALKRFHAVLKHFD 336 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhcCC---CCCcccCHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHH
Confidence 778888999999999988776543 11111111 134 56677777 89999999999999988754
No 118
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.79 E-value=2e-07 Score=97.57 Aligned_cols=168 Identities=13% Similarity=0.023 Sum_probs=149.4
Q ss_pred CChhHHHHHHHHHHHHHHhCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhccchHHHHH
Q 001481 284 LDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLF 363 (1071)
Q Consensus 284 ~~p~~~~~W~~y~~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~ 363 (1071)
.+|++.++ .++...+...|+-+....+..+++...|.+..+...+++.....|++..|..++.||... .|.+...|..
T Consensus 62 ~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~ 139 (257)
T COG5010 62 RNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNL 139 (257)
T ss_pred cCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhH
Confidence 46777778 778877777888888888888888888999999989999999999999999999999986 7788899999
Q ss_pred HHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHH
Q 001481 364 NARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLT 443 (1071)
Q Consensus 364 ~a~~e~~~g~~~~A~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~ 443 (1071)
.+..+.+.|+++.|+..|.+++ ++.++...+..+.+..+.-.|+++.|+.++.++... .+.+..+--+++.+.
T Consensus 140 lgaaldq~Gr~~~Ar~ay~qAl-~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~------~~ad~~v~~NLAl~~ 212 (257)
T COG5010 140 LGAALDQLGRFDEARRAYRQAL-ELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS------PAADSRVRQNLALVV 212 (257)
T ss_pred HHHHHHHccChhHHHHHHHHHH-HhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC------CCCchHHHHHHHHHH
Confidence 9999999999999999999999 788988999999999999999999999999999887 566788889998888
Q ss_pred HhhcCCHHHHHHHHHHHH
Q 001481 444 YTTTGSADNARDILIDGI 461 (1071)
Q Consensus 444 ~~~~g~~e~Ar~i~e~al 461 (1071)
. ..|++.+|+++-..=+
T Consensus 213 ~-~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 213 G-LQGDFREAEDIAVQEL 229 (257)
T ss_pred h-hcCChHHHHhhccccc
Confidence 7 9999999998866543
No 119
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.78 E-value=2.4e-05 Score=86.43 Aligned_cols=234 Identities=17% Similarity=0.071 Sum_probs=163.8
Q ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhccchHHHHH---
Q 001481 287 IQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLF--- 363 (1071)
Q Consensus 287 ~~~~~W~~y~~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~--- 363 (1071)
.+..+...........||+..|+.-.+.++...|.+..+-.-...+|...|++.....++.+..+.-.-++++.-..
T Consensus 151 ~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~ 230 (400)
T COG3071 151 DTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQ 230 (400)
T ss_pred chHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHH
Confidence 44556666677777778888888888888888888888888888888888888877777766554311112211100
Q ss_pred -HHHHHHHhCCHH---HHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHH
Q 001481 364 -NARYKEQIGDTS---AARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQF 439 (1071)
Q Consensus 364 -~a~~e~~~g~~~---~A~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~ 439 (1071)
|..++...++-+ .-...++..- ....+.+.+-..++.-+.+.|+.++|.++.+.+++. ..++.++..+
T Consensus 231 a~~glL~q~~~~~~~~gL~~~W~~~p-r~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-------~~D~~L~~~~ 302 (400)
T COG3071 231 AWEGLLQQARDDNGSEGLKTWWKNQP-RKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-------QWDPRLCRLI 302 (400)
T ss_pred HHHHHHHHHhccccchHHHHHHHhcc-HHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-------ccChhHHHHH
Confidence 111111111111 1112222221 112245777888888889999999999999999987 3455555444
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCCCchhhHHHHHHHhhccCCcccccCChhhHHHHHHH
Q 001481 440 SRLTYTTTGSADNARDILIDGIKHVPNCKLLLEELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSL 519 (1071)
Q Consensus 440 A~~~~~~~g~~e~Ar~i~e~al~~~P~~~~lw~~~~~~e~~~g~~~~a~~~r~l~e~Al~~~~d~~~~l~~~~~~~lw~~ 519 (1071)
+.+ ..++...=.+..++.++..|+++.+|..+..+..+.+.+.++. ..|+.|+...++ ..-|..
T Consensus 303 ~~l---~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~---~~leaAl~~~~s----------~~~~~~ 366 (400)
T COG3071 303 PRL---RPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKAS---EALEAALKLRPS----------ASDYAE 366 (400)
T ss_pred hhc---CCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHH---HHHHHHHhcCCC----------hhhHHH
Confidence 433 6789999999999999999999999999999999999998885 999999976542 233444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhC
Q 001481 520 YLQQFLDLCGTIHDIRNAWNQHIKLF 545 (1071)
Q Consensus 520 ~l~~~e~~~G~~e~a~~~~~ra~~~~ 545 (1071)
.. ...+..|..+.+.++++.++..+
T Consensus 367 la-~~~~~~g~~~~A~~~r~e~L~~~ 391 (400)
T COG3071 367 LA-DALDQLGEPEEAEQVRREALLLT 391 (400)
T ss_pred HH-HHHHHcCChHHHHHHHHHHHHHh
Confidence 55 66778999999999999998665
No 120
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.71 E-value=3.8e-07 Score=89.47 Aligned_cols=115 Identities=13% Similarity=0.225 Sum_probs=107.7
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc
Q 001481 24 QGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSA 103 (1071)
Q Consensus 24 ~~le~al~~nP~d~~~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P~s~~lW~~~a~~e~~~~~~e~A~~lferAL~~~ 103 (1071)
+.|+++|..+|.+...-..++..+... +++++|...|++++..+|.+...|..++......+++++|..+|+++++..
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~--~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQ--GRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHc--ccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 479999999999999888888888777 899999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhcCCC
Q 001481 104 TYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKD 141 (1071)
Q Consensus 104 P~s~~lW~~y~~~~~~~~~~~e~ar~l~erAL~~~~~~ 141 (1071)
|.+.+.|..++..+... +++++|...|+++++..|.+
T Consensus 82 p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~ 118 (135)
T TIGR02552 82 PDDPRPYFHAAECLLAL-GEPESALKALDLAIEICGEN 118 (135)
T ss_pred CCChHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhcccc
Confidence 99999999999988888 99999999999999987764
No 121
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.68 E-value=1.3e-07 Score=100.61 Aligned_cols=110 Identities=14% Similarity=0.080 Sum_probs=101.4
Q ss_pred HHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhhc
Q 001481 368 KEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTT 447 (1071)
Q Consensus 368 e~~~g~~~~A~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~ 447 (1071)
+.+.++|.+|...|.+|| .++|.++-.|...+..+.++|.++.|++-++.||.+ +|..+++|..+|.++. ..
T Consensus 91 ~m~~~~Y~eAv~kY~~AI-~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i------Dp~yskay~RLG~A~~-~~ 162 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAI-ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI------DPHYSKAYGRLGLAYL-AL 162 (304)
T ss_pred HHHhhhHHHHHHHHHHHH-hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc------ChHHHHHHHHHHHHHH-cc
Confidence 456889999999999999 889999999999999999999999999999999999 8999999999999998 99
Q ss_pred CCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCCC
Q 001481 448 GSADNARDILIDGIKHVPNCKLLLEELIKFTMVHGGRS 485 (1071)
Q Consensus 448 g~~e~Ar~i~e~al~~~P~~~~lw~~~~~~e~~~g~~~ 485 (1071)
|++++|...|.+||.++|++..+|..+-..+.+++...
T Consensus 163 gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 163 GKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred CcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999988877777766554
No 122
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.67 E-value=7.3e-07 Score=87.66 Aligned_cols=100 Identities=10% Similarity=-0.090 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHH
Q 001481 360 IHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQF 439 (1071)
Q Consensus 360 i~~~~a~~e~~~g~~~~A~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~ 439 (1071)
..+.++..+...|++++|..+|+-++ .++|.+.+.|+.++-+....|++.+|+.+|.+|+.+ .+.++..+.+.
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~-~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L------~~ddp~~~~~a 109 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLT-IYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI------KIDAPQAPWAA 109 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHH-HhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc------CCCCchHHHHH
Confidence 45566677788999999999999988 789999999999999999999999999999999999 78999999999
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHhhCCCh
Q 001481 440 SRLTYTTTGSADNARDILIDGIKHVPNC 467 (1071)
Q Consensus 440 A~~~~~~~g~~e~Ar~i~e~al~~~P~~ 467 (1071)
|.++. ..|+.+.|++.|+.++..+...
T Consensus 110 g~c~L-~lG~~~~A~~aF~~Ai~~~~~~ 136 (157)
T PRK15363 110 AECYL-ACDNVCYAIKALKAVVRICGEV 136 (157)
T ss_pred HHHHH-HcCCHHHHHHHHHHHHHHhccC
Confidence 99998 9999999999999999988543
No 123
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.62 E-value=1.1e-05 Score=91.42 Aligned_cols=150 Identities=9% Similarity=-0.133 Sum_probs=131.6
Q ss_pred CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHH
Q 001481 320 ADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFK 399 (1071)
Q Consensus 320 p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~~A~~~~~~al~~~~p~~~~~w~~~ 399 (1071)
|....+||..+.-+...|.+++|+..+...+.. .|+++.++...+.++.+.++.++|.+.|++++ ..+|+..-+|+.|
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal-~l~P~~~~l~~~~ 380 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKAL-ALDPNSPLLQLNL 380 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH-hcCCCccHHHHHH
Confidence 678889999999999999999999999887765 78889899999999999999999999999999 7889888899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHH
Q 001481 400 ANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLLLEELIKFTM 479 (1071)
Q Consensus 400 a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~~~P~~~~lw~~~~~~e~ 479 (1071)
++.+...|++.+|+.++.+.+.. .|.++..|..+|+.+. ..|+..+|...+..+......-.. |..++....
T Consensus 381 a~all~~g~~~eai~~L~~~~~~------~p~dp~~w~~LAqay~-~~g~~~~a~~A~AE~~~~~G~~~~-A~~~l~~A~ 452 (484)
T COG4783 381 AQALLKGGKPQEAIRILNRYLFN------DPEDPNGWDLLAQAYA-ELGNRAEALLARAEGYALAGRLEQ-AIIFLMRAS 452 (484)
T ss_pred HHHHHhcCChHHHHHHHHHHhhc------CCCCchHHHHHHHHHH-HhCchHHHHHHHHHHHHhCCCHHH-HHHHHHHHH
Confidence 99999999999999999999988 8999999999999998 999999999999999877764333 333444333
No 124
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=98.61 E-value=1.5e-07 Score=99.41 Aligned_cols=139 Identities=13% Similarity=0.289 Sum_probs=110.7
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhc----CC--------C------cH---HHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q 001481 25 GLEEFIAEGSLDFDEWTSLLSEIENS----CP--------D------DI---EMIGLVYDSFLAEFPLCYGYWRKYADHK 83 (1071)
Q Consensus 25 ~le~al~~nP~d~~~W~~li~~~~~~----~~--------~------~~---~~a~~vyeraL~~~P~s~~lW~~~a~~e 83 (1071)
.||..|..--..+.-+++||.+ +.. +. + ++ .+...+|-|+...||+++++|..|+...
T Consensus 39 ~fE~rL~rr~~klnDf~~YI~y-E~nleklRaKR~Kr~~v~~K~s~sD~sipqk~~f~~~R~tnkff~D~k~w~~y~~Y~ 117 (435)
T COG5191 39 KFELRLQRREKKLNDFMRYIKY-ECNLEKLRAKRVKRKKVGKKASFSDMSIPQKKIFELYRSTNKFFNDPKIWSQYAAYV 117 (435)
T ss_pred HHHHHHhcccchHHHHHHHHHH-HhhHHHHHHHHHHHHHhcccccchhccccceeeEeeehhhhcCCCCcHHHHHHHHHH
Confidence 5777777777788888888873 310 00 0 00 1223356788889999999999999999
Q ss_pred HHhCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHccCHHH
Q 001481 84 ARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSS 163 (1071)
Q Consensus 84 ~~~~~~e~A~~lferAL~~~P~s~~lW~~y~~~~~~~~~~~e~ar~l~erAL~~~~~~~~s~~lW~~yi~fe~~~~~~~~ 163 (1071)
.+.+.+.+...+|..||..+|.+++||+--|.|+.....+++.+|.+|.++|+..+. ++.||..|.+||...
T Consensus 118 ~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~---~p~iw~eyfr~El~y----- 189 (435)
T COG5191 118 IKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSR---SPRIWIEYFRMELMY----- 189 (435)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCC---CchHHHHHHHHHHHH-----
Confidence 999999999999999999999999999998999887768999999999999998765 678999999999753
Q ss_pred HHHHHHHHh
Q 001481 164 LAQIFVQTL 172 (1071)
Q Consensus 164 a~~iy~ral 172 (1071)
+.+++.|.+
T Consensus 190 iTKL~~R~~ 198 (435)
T COG5191 190 ITKLINRRE 198 (435)
T ss_pred HHHHHhhHH
Confidence 445565553
No 125
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=98.57 E-value=2.8e-06 Score=96.23 Aligned_cols=112 Identities=16% Similarity=0.275 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHhCC------------HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChh
Q 001481 58 IGLVYDSFLAEFPLCYGYWRKYADHKARLCS------------IDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPN 125 (1071)
Q Consensus 58 a~~vyeraL~~~P~s~~lW~~~a~~e~~~~~------------~e~A~~lferAL~~~P~s~~lW~~y~~~~~~~~~~~e 125 (1071)
...-|++.++.+|.+++.|+.|+++..+.-. .+....+|+|||+.+|.+..||+.|++...+. .+.+
T Consensus 4 r~~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~-~~~~ 82 (321)
T PF08424_consen 4 RTAELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKV-WDSE 82 (321)
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-CCHH
Confidence 3467899999999999999999999765422 46777899999999999999999999998877 7888
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHc---cCHHHHHHHHHHHhc
Q 001481 126 DVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQ---QRWSSLAQIFVQTLR 173 (1071)
Q Consensus 126 ~ar~l~erAL~~~~~~~~s~~lW~~yi~fe~~~---~~~~~a~~iy~ral~ 173 (1071)
++.+.+++++...+. +..||..|++|.... -.++.++++|.++|.
T Consensus 83 ~l~~~we~~l~~~~~---~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~ 130 (321)
T PF08424_consen 83 KLAKKWEELLFKNPG---SPELWREYLDFRQSNFASFTVSDVRDVYEKCLR 130 (321)
T ss_pred HHHHHHHHHHHHCCC---ChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Confidence 899999999998765 678999999999873 357888999888876
No 126
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=6.7e-06 Score=90.64 Aligned_cols=156 Identities=13% Similarity=0.028 Sum_probs=113.4
Q ss_pred hCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhccch------------HHHHHHHHHHH
Q 001481 302 QGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLP------------VIHLFNARYKE 369 (1071)
Q Consensus 302 ~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p------------~i~~~~a~~e~ 369 (1071)
.|++++|...--+.++.++.+.+..+-.+.++.-.++.+.|...|.+++++ .|..- ..|-.-+.-..
T Consensus 182 ~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l-dpdh~~sk~~~~~~k~le~~k~~gN~~f 260 (486)
T KOG0550|consen 182 LGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRL-DPDHQKSKSASMMPKKLEVKKERGNDAF 260 (486)
T ss_pred cccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhcc-ChhhhhHHhHhhhHHHHHHHHhhhhhHh
Confidence 455555555555555555555555555555555555666666666666654 22111 23444555567
Q ss_pred HhCCHHHHHHHHHHHhhccChhh----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHh
Q 001481 370 QIGDTSAARAAFPESYIDSDSRF----IEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYT 445 (1071)
Q Consensus 370 ~~g~~~~A~~~~~~al~~~~p~~----~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~ 445 (1071)
+.|++..|.++|..|| .++|++ +.+|.+.+....++|+..+|+.-.++|+++ ++..-+.++..|.+..
T Consensus 261 k~G~y~~A~E~Yteal-~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i------D~syikall~ra~c~l- 332 (486)
T KOG0550|consen 261 KNGNYRKAYECYTEAL-NIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI------DSSYIKALLRRANCHL- 332 (486)
T ss_pred hccchhHHHHHHHHhh-cCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc------CHHHHHHHHHHHHHHH-
Confidence 7899999999999999 777744 566888888888999999999999999998 7777888899999987
Q ss_pred hcCCHHHHHHHHHHHHhhCCC
Q 001481 446 TTGSADNARDILIDGIKHVPN 466 (1071)
Q Consensus 446 ~~g~~e~Ar~i~e~al~~~P~ 466 (1071)
.+++++.|++-|+++++...+
T Consensus 333 ~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 333 ALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHHHHHHhhccc
Confidence 899999999999999987655
No 127
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=3.2e-06 Score=93.05 Aligned_cols=283 Identities=11% Similarity=0.029 Sum_probs=195.9
Q ss_pred HHHHHHHHHHHHhcccCcCCCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCHHH
Q 001481 262 QLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREI 341 (1071)
Q Consensus 262 ~~~~~~~~fE~ai~~~~~~~~~~~p~~~~~W~~y~~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~ 341 (1071)
.+-+.+..|..+|+ +.|++...|...+..+.-.|+++++.--++..+...+.........+.+....+...+
T Consensus 64 ~Y~nal~~yt~Ai~--------~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~ 135 (486)
T KOG0550|consen 64 TYGNALKNYTFAID--------MCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIE 135 (486)
T ss_pred hHHHHHHHHHHHHH--------hCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHH
Confidence 33445556666665 4677788899999888888999999999999998888887777777777777666655
Q ss_pred HHHHHHHH--------HHHhh---------ccchHHHHHHHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHH
Q 001481 342 ASYALDRA--------TQIFL---------KRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMER 404 (1071)
Q Consensus 342 A~~il~rA--------l~~~~---------~~~p~i~~~~a~~e~~~g~~~~A~~~~~~al~~~~p~~~~~w~~~a~le~ 404 (1071)
|...|+-. +.... |.|-..-+.-+.++...|++++|..+-...+ .+++.+..+.+-.+.++.
T Consensus 136 A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~il-kld~~n~~al~vrg~~~y 214 (486)
T KOG0550|consen 136 AEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDIL-KLDATNAEALYVRGLCLY 214 (486)
T ss_pred HHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHH-hcccchhHHHHhcccccc
Confidence 55444311 11100 1111334445677888999999999888777 678888888888888888
Q ss_pred HcCCHHHHHHHHHHHHHHHhhhccCCCcH------------HHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCChH----
Q 001481 405 RLGNFVAACDTYKEALETAAEQRKFHTLP------------LLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCK---- 468 (1071)
Q Consensus 405 ~~g~~~~A~~~y~~Al~~~~~~~~~p~~~------------~l~~~~A~~~~~~~g~~e~Ar~i~e~al~~~P~~~---- 468 (1071)
-.++.+.|...|.+++.+ +|... +.|-.-|.-.+ ..|++.+|-++|..||.++|++.
T Consensus 215 y~~~~~ka~~hf~qal~l------dpdh~~sk~~~~~~k~le~~k~~gN~~f-k~G~y~~A~E~Yteal~idP~n~~~na 287 (486)
T KOG0550|consen 215 YNDNADKAINHFQQALRL------DPDHQKSKSASMMPKKLEVKKERGNDAF-KNGNYRKAYECYTEALNIDPSNKKTNA 287 (486)
T ss_pred cccchHHHHHHHhhhhcc------ChhhhhHHhHhhhHHHHHHHHhhhhhHh-hccchhHHHHHHHHhhcCCccccchhH
Confidence 889999999999999998 34322 34555555555 78999999999999999999865
Q ss_pred HHHHHHHHHHHHcCCCCchhhHHHHHHHhhccCCcccccCChhhHHHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHhCCC
Q 001481 469 LLLEELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQ-QFLDLCGTIHDIRNAWNQHIKLFPH 547 (1071)
Q Consensus 469 ~lw~~~~~~e~~~g~~~~a~~~r~l~e~Al~~~~d~~~~l~~~~~~~lw~~~l~-~~e~~~G~~e~a~~~~~ra~~~~p~ 547 (1071)
.+|...+.....+|..+++. .-.+.|+..++ ..||-...+ +-...+|.++.+..-|+++++.-.+
T Consensus 288 klY~nra~v~~rLgrl~eai---sdc~~Al~iD~-----------syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 288 KLYGNRALVNIRLGRLREAI---SDCNEALKIDS-----------SYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHhHhhhcccCCchhhh---hhhhhhhhcCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 45666666666777776653 67777775433 233322220 2224567888888888888887655
Q ss_pred CccccccCCcccchhhhhhhhccchhh--hhcCC
Q 001481 548 TVRTAYECPGRETKSLRAFIRGKRESN--VASLP 579 (1071)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~~lp 579 (1071)
-.. ....+.+..+|.++.|... |+|+.
T Consensus 354 ~e~-----r~~l~~A~~aLkkSkRkd~ykilGi~ 382 (486)
T KOG0550|consen 354 CEI-----RRTLREAQLALKKSKRKDWYKILGIS 382 (486)
T ss_pred cch-----HHHHHHHHHHHHHhhhhhHHHHhhhh
Confidence 111 1223455777788888553 66665
No 128
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.52 E-value=9.5e-05 Score=87.15 Aligned_cols=213 Identities=15% Similarity=0.144 Sum_probs=111.3
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Q 001481 290 KNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKE 369 (1071)
Q Consensus 290 ~~W~~y~~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~ 369 (1071)
.+|.=++.++++.|+.+.|+.+|+.|-. |+...+.+.-.|+.++|..+.+..-. -..-+.+|+.++
T Consensus 913 ~L~~WWgqYlES~GemdaAl~~Y~~A~D--------~fs~VrI~C~qGk~~kAa~iA~esgd------~AAcYhlaR~YE 978 (1416)
T KOG3617|consen 913 SLYSWWGQYLESVGEMDAALSFYSSAKD--------YFSMVRIKCIQGKTDKAARIAEESGD------KAACYHLARMYE 978 (1416)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHhhh--------hhhheeeEeeccCchHHHHHHHhccc------HHHHHHHHHHhh
Confidence 5677778888899999999999998854 44444444445555555544433221 122333455555
Q ss_pred HhCCHHHHHHHHHHHhh-----ccCh--hh------------HHHHHHHHHHHHHcC-CHHHHHHHHHHH----------
Q 001481 370 QIGDTSAARAAFPESYI-----DSDS--RF------------IEKVTFKANMERRLG-NFVAACDTYKEA---------- 419 (1071)
Q Consensus 370 ~~g~~~~A~~~~~~al~-----~~~p--~~------------~~~w~~~a~le~~~g-~~~~A~~~y~~A---------- 419 (1071)
..|++-+|...|.+|-. .+.. +. .+-....+.++...| .++.|..+|.+|
T Consensus 979 n~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelA 1058 (1416)
T KOG3617|consen 979 NDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELA 1058 (1416)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHH
Confidence 55666555555554420 0000 00 000111222222222 444444444332
Q ss_pred --------HHHHhhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHH------HHHHHhhCCC-hHHHHHHHHHHHHHcCCC
Q 001481 420 --------LETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDI------LIDGIKHVPN-CKLLLEELIKFTMVHGGR 484 (1071)
Q Consensus 420 --------l~~~~~~~~~p~~~~l~~~~A~~~~~~~g~~e~Ar~i------~e~al~~~P~-~~~lw~~~~~~e~~~g~~ 484 (1071)
++++..+-....++++....|.++. ....+++|..+ |+.||.+|.+ +..+-..++++.
T Consensus 1059 F~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~-~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~m------ 1131 (1416)
T KOG3617|consen 1059 FRTQQFSALDLIAKDLDAGSDPKLLRRCADFFE-NNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELM------ 1131 (1416)
T ss_pred HhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhc------
Confidence 3333333344556777777777766 66667776655 3334433332 222222222222
Q ss_pred CchhhHHHHHHHhhccCCcccccCChhhHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 001481 485 SHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQQFLDLCGTIHDIRNAWNQ 540 (1071)
Q Consensus 485 ~~a~~~r~l~e~Al~~~~d~~~~l~~~~~~~lw~~~l~~~e~~~G~~e~a~~~~~r 540 (1071)
. |..+..++...+.++..... ++....|++..|-+-|-.
T Consensus 1132 --------------T--p~Kd~~~~e~~R~~vLeqva-e~c~qQG~Yh~AtKKfTQ 1170 (1416)
T KOG3617|consen 1132 --------------T--PTKDDMPNEQERKQVLEQVA-ELCLQQGAYHAATKKFTQ 1170 (1416)
T ss_pred --------------C--cCcCCCccHHHHHHHHHHHH-HHHHhccchHHHHHHHhh
Confidence 1 11112344456667777777 889999998888777644
No 129
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.50 E-value=3e-06 Score=83.41 Aligned_cols=102 Identities=20% Similarity=0.134 Sum_probs=94.9
Q ss_pred CC-hhHHHHHHHHHHHHHHhCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhccchHHHH
Q 001481 284 LD-DIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHL 362 (1071)
Q Consensus 284 ~~-p~~~~~W~~y~~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~ 362 (1071)
++ ++.++....|+..+...|+++.|..+|+-.+..+|.+.+.|+.++.++...|++++|+..|.+|+.+ .+++|..++
T Consensus 29 ~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L-~~ddp~~~~ 107 (157)
T PRK15363 29 DDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI-KIDAPQAPW 107 (157)
T ss_pred CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-CCCCchHHH
Confidence 45 6777888889998889999999999999999999999999999999999999999999999999987 789999999
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHhh
Q 001481 363 FNARYKEQIGDTSAARAAFPESYI 386 (1071)
Q Consensus 363 ~~a~~e~~~g~~~~A~~~~~~al~ 386 (1071)
..+.++...|+.+.|++.|+.++.
T Consensus 108 ~ag~c~L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 108 AAAECYLACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999999999984
No 130
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.48 E-value=2e-06 Score=98.85 Aligned_cols=105 Identities=19% Similarity=0.168 Sum_probs=94.1
Q ss_pred HHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHH
Q 001481 365 ARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTY 444 (1071)
Q Consensus 365 a~~e~~~g~~~~A~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~ 444 (1071)
|.-....|++++|+.+|.+++ .++|++..+|+.++.++...|++++|+..|++|+.+ .|..+.+|+.+|.++.
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al-~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l------~P~~~~a~~~lg~~~~ 81 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAI-DLDPNNAELYADRAQANIKLGNFTEAVADANKAIEL------DPSLAKAYLRKGTACM 81 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CcCCHHHHHHHHHHHH
Confidence 445567899999999999999 789999999999999999999999999999999999 7899999999999998
Q ss_pred hhcCCHHHHHHHHHHHHhhCCChHHHHHHHHHH
Q 001481 445 TTTGSADNARDILIDGIKHVPNCKLLLEELIKF 477 (1071)
Q Consensus 445 ~~~g~~e~Ar~i~e~al~~~P~~~~lw~~~~~~ 477 (1071)
..|++++|+..|+++++..|++..+......+
T Consensus 82 -~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 82 -KLEEYQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred -HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99999999999999999999988765544333
No 131
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.47 E-value=7.3e-06 Score=92.74 Aligned_cols=162 Identities=17% Similarity=0.048 Sum_probs=138.9
Q ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhccchHHHHHHHH
Q 001481 287 IQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNAR 366 (1071)
Q Consensus 287 ~~~~~W~~y~~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~ 366 (1071)
.....|+-.+.-....|+++.|+..+...+...|++.-+|...+..+.+.|+..+|.+.+++++.. .|..+.+++.|+.
T Consensus 304 ~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l-~P~~~~l~~~~a~ 382 (484)
T COG4783 304 GGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALAL-DPNSPLLQLNLAQ 382 (484)
T ss_pred cchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-CCCccHHHHHHHH
Confidence 344567666666667899999999999999999999999999999999999999999999999997 7777899999999
Q ss_pred HHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhh
Q 001481 367 YKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTT 446 (1071)
Q Consensus 367 ~e~~~g~~~~A~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~ 446 (1071)
.+.+.|++.+|..++.+.+ .-+|+++..|..++..+...|+..++...+.++.. .
T Consensus 383 all~~g~~~eai~~L~~~~-~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~------------------------~ 437 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYL-FNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYA------------------------L 437 (484)
T ss_pred HHHhcCChHHHHHHHHHHh-hcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHH------------------------h
Confidence 9999999999999999998 56899999999999999999998887776655432 5
Q ss_pred cCCHHHHHHHHHHHHhhCCChHHHHHHH
Q 001481 447 TGSADNARDILIDGIKHVPNCKLLLEEL 474 (1071)
Q Consensus 447 ~g~~e~Ar~i~e~al~~~P~~~~lw~~~ 474 (1071)
.|+++.|...+.++.+....+...|..+
T Consensus 438 ~G~~~~A~~~l~~A~~~~~~~~~~~aR~ 465 (484)
T COG4783 438 AGRLEQAIIFLMRASQQVKLGFPDWARA 465 (484)
T ss_pred CCCHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 7888888888888888876666666655
No 132
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=98.46 E-value=2.6e-07 Score=97.54 Aligned_cols=107 Identities=13% Similarity=0.235 Sum_probs=95.0
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHhc
Q 001481 25 GLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKA-RLCSIDKVVEVFERAVQSA 103 (1071)
Q Consensus 25 ~le~al~~nP~d~~~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P~s~~lW~~~a~~e~-~~~~~e~A~~lferAL~~~ 103 (1071)
.|.++..+.|.|++.|..++.+..+. +.+.+...+|-.+|..+|+++++|...+.++. ..++++.+|.+|.++|+.+
T Consensus 95 ~~~R~tnkff~D~k~w~~y~~Y~~k~--k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N 172 (435)
T COG5191 95 ELYRSTNKFFNDPKIWSQYAAYVIKK--KMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMN 172 (435)
T ss_pred eeehhhhcCCCCcHHHHHHHHHHHHH--HHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccC
Confidence 46778889999999999999988887 88999999999999999999999999888875 4589999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhcC
Q 001481 104 TYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVG 139 (1071)
Q Consensus 104 P~s~~lW~~y~~~~~~~~~~~e~ar~l~erAL~~~~ 139 (1071)
|.++.||.+|.++++.- .-++|+|-++..+
T Consensus 173 ~~~p~iw~eyfr~El~y------iTKL~~R~~Kte~ 202 (435)
T COG5191 173 SRSPRIWIEYFRMELMY------ITKLINRREKTEI 202 (435)
T ss_pred CCCchHHHHHHHHHHHH------HHHHHhhHHHHhh
Confidence 99999999999998865 6677777765443
No 133
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.43 E-value=9.1e-06 Score=90.58 Aligned_cols=180 Identities=17% Similarity=0.149 Sum_probs=115.8
Q ss_pred CHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhccc-h----HHHHHHHHHHHHhCCHHHHH
Q 001481 304 DFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRL-P----VIHLFNARYKEQIGDTSAAR 378 (1071)
Q Consensus 304 ~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~-p----~i~~~~a~~e~~~g~~~~A~ 378 (1071)
+++.|..+|++| |..+...+++++|.+.|.+|...+.+.. + ..+...+.++ +.+++++|.
T Consensus 30 ~~e~Aa~~y~~A--------------a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~-k~~~~~~Ai 94 (282)
T PF14938_consen 30 DYEEAADLYEKA--------------ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCY-KKGDPDEAI 94 (282)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTTHHHHH
T ss_pred CHHHHHHHHHHH--------------HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhhCHHHHH
Confidence 455666666655 3344555666666666666655433211 1 2233333343 334888888
Q ss_pred HHHHHHhhcc----C-hhhHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhhcCCHHH
Q 001481 379 AAFPESYIDS----D-SRFIEKVTFKANMERRL-GNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADN 452 (1071)
Q Consensus 379 ~~~~~al~~~----~-p~~~~~w~~~a~le~~~-g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~g~~e~ 452 (1071)
.+|.+|+.-. . ..-.+++...+.++... |+++.|+.+|++|++.............++..+|.++. ..|++++
T Consensus 95 ~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~-~l~~y~~ 173 (282)
T PF14938_consen 95 ECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYA-RLGRYEE 173 (282)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH-HTT-HHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHH-HhCCHHH
Confidence 8888887311 1 23366788888888888 99999999999999998655433344578899999988 9999999
Q ss_pred HHHHHHHHHhhCCCh-------HHHHHHHHHHHHHcCCCCchhhHHHHHHHhhccCC
Q 001481 453 ARDILIDGIKHVPNC-------KLLLEELIKFTMVHGGRSHISIVDAVISNALYSRP 502 (1071)
Q Consensus 453 Ar~i~e~al~~~P~~-------~~lw~~~~~~e~~~g~~~~a~~~r~l~e~Al~~~~ 502 (1071)
|.++|++....+-.+ ..+++..+-+....||...+ +..|++....+|
T Consensus 174 A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A---~~~~~~~~~~~~ 227 (282)
T PF14938_consen 174 AIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAA---RKALERYCSQDP 227 (282)
T ss_dssp HHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHH---HHHHHHHGTTST
T ss_pred HHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHH---HHHHHHHHhhCC
Confidence 999999999865432 23555555556666776555 588888876655
No 134
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.42 E-value=4e-06 Score=89.54 Aligned_cols=110 Identities=13% Similarity=-0.016 Sum_probs=71.1
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHh
Q 001481 292 WHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQI 371 (1071)
Q Consensus 292 W~~y~~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~ 371 (1071)
.+.-+.-+.+.++|.+|+..|.+||.++|.++.++.+.|-.|.+.|.++.|++-++.|+.+ .|+.-..|..++..+...
T Consensus 84 LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i-Dp~yskay~RLG~A~~~~ 162 (304)
T KOG0553|consen 84 LKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI-DPHYSKAYGRLGLAYLAL 162 (304)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHcc
Confidence 3334444455667777777777777777777777777777777777777777777777776 222223444444456667
Q ss_pred CCHHHHHHHHHHHhhccChhhHHHHHHHHHHH
Q 001481 372 GDTSAARAAFPESYIDSDSRFIEKVTFKANME 403 (1071)
Q Consensus 372 g~~~~A~~~~~~al~~~~p~~~~~w~~~a~le 403 (1071)
|++++|...|++|| +++|++...|-.+-..+
T Consensus 163 gk~~~A~~aykKaL-eldP~Ne~~K~nL~~Ae 193 (304)
T KOG0553|consen 163 GKYEEAIEAYKKAL-ELDPDNESYKSNLKIAE 193 (304)
T ss_pred CcHHHHHHHHHhhh-ccCCCcHHHHHHHHHHH
Confidence 77777777777777 67776664444443333
No 135
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.39 E-value=5.9e-05 Score=88.84 Aligned_cols=136 Identities=15% Similarity=0.161 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Q 001481 290 KNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKE 369 (1071)
Q Consensus 290 ~~W~~y~~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~ 369 (1071)
..+++|+.+++..+|++.|++.||++=... .++.-++.. +-.+++.|-+ ..+++.+|.+|+.+++
T Consensus 859 ~Tyy~yA~~Lear~Di~~AleyyEK~~~ha---fev~rmL~e-------~p~~~e~Yv~-----~~~d~~L~~WWgqYlE 923 (1416)
T KOG3617|consen 859 NTYYNYAKYLEARRDIEAALEYYEKAGVHA---FEVFRMLKE-------YPKQIEQYVR-----RKRDESLYSWWGQYLE 923 (1416)
T ss_pred hhHHHHHHHHHhhccHHHHHHHHHhcCChH---HHHHHHHHh-------ChHHHHHHHH-----hccchHHHHHHHHHHh
Confidence 367788888888888888888888874321 111111111 1122222211 2346789999999999
Q ss_pred HhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhhcCC
Q 001481 370 QIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGS 449 (1071)
Q Consensus 370 ~~g~~~~A~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~g~ 449 (1071)
..|+.|.|+.+|..|-+ |+...++..-.|++++|..+-++.=+ --+.+.+|+.|+ ..|+
T Consensus 924 S~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~esgd-----------~AAcYhlaR~YE-n~g~ 982 (1416)
T KOG3617|consen 924 SVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEESGD-----------KAACYHLARMYE-NDGD 982 (1416)
T ss_pred cccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhccc-----------HHHHHHHHHHhh-hhHH
Confidence 99999999999998852 66666666778999999887665422 345667899988 8999
Q ss_pred HHHHHHHHHHHH
Q 001481 450 ADNARDILIDGI 461 (1071)
Q Consensus 450 ~e~Ar~i~e~al 461 (1071)
+-+|...|.+|-
T Consensus 983 v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 983 VVKAVKFFTRAQ 994 (1416)
T ss_pred HHHHHHHHHHHH
Confidence 999999988874
No 136
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.39 E-value=3.6e-06 Score=96.77 Aligned_cols=95 Identities=16% Similarity=0.085 Sum_probs=53.7
Q ss_pred HHHhCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhCCHHHHH
Q 001481 299 AEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAAR 378 (1071)
Q Consensus 299 ~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~~A~ 378 (1071)
+...|+++.|+.+|++||...|.+..+|+.++.++...|++++|+..+++|+.+ .|.++.+|+.++.++...|++++|+
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l-~P~~~~a~~~lg~~~~~lg~~~eA~ 90 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIEL-DPSLAKAYLRKGTACMKLEEYQTAK 90 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CcCCHHHHHHHHHHHHHhCCHHHHH
Confidence 334556666666666666666666666666666666666666666666666554 4444455555555555555555555
Q ss_pred HHHHHHhhccChhhHHH
Q 001481 379 AAFPESYIDSDSRFIEK 395 (1071)
Q Consensus 379 ~~~~~al~~~~p~~~~~ 395 (1071)
..|++++ .++|++..+
T Consensus 91 ~~~~~al-~l~P~~~~~ 106 (356)
T PLN03088 91 AALEKGA-SLAPGDSRF 106 (356)
T ss_pred HHHHHHH-HhCCCCHHH
Confidence 5555555 444444433
No 137
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.37 E-value=0.0024 Score=74.07 Aligned_cols=140 Identities=16% Similarity=0.102 Sum_probs=94.9
Q ss_pred CHHHHHHHHHHHHHHhhccc-hHHHHHHHHHHHHhCCHHHHHHHHHHHhh-------ccChhhHHHHHHHHHHHHHcCCH
Q 001481 338 GREIASYALDRATQIFLKRL-PVIHLFNARYKEQIGDTSAARAAFPESYI-------DSDSRFIEKVTFKANMERRLGNF 409 (1071)
Q Consensus 338 ~~e~A~~il~rAl~~~~~~~-p~i~~~~a~~e~~~g~~~~A~~~~~~al~-------~~~p~~~~~w~~~a~le~~~g~~ 409 (1071)
....|.+++...... .|.. -.+.+..+.+....|+++.|.+++...+. ++ -..+.+......++.+.++.
T Consensus 356 ~~~ka~e~L~~~~~~-~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~-~~~P~~V~aiv~l~~~~~~~ 433 (652)
T KOG2376|consen 356 KHKKAIELLLQFADG-HPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEA-KHLPGTVGAIVALYYKIKDN 433 (652)
T ss_pred HHhhhHHHHHHHhcc-CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhh-ccChhHHHHHHHHHHhccCC
Confidence 455566666555543 2222 24677777888899999999999983331 11 12233344444566677888
Q ss_pred HHHHHHHHHHHHHHhhhc-cCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHH
Q 001481 410 VAACDTYKEALETAAEQR-KFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLLLEELIKFTMV 480 (1071)
Q Consensus 410 ~~A~~~y~~Al~~~~~~~-~~p~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~~~P~~~~lw~~~~~~e~~ 480 (1071)
+.|..++..|+....... .....-.+|-..|.|.. +.|..++|...|++.++.+|++.++...++.-+..
T Consensus 434 ~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~l-r~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~ 504 (652)
T KOG2376|consen 434 DSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKL-RHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYAR 504 (652)
T ss_pred ccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHH-hcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHh
Confidence 889999999998864332 12233345666777877 77999999999999999999998877666555443
No 138
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.37 E-value=0.0012 Score=86.39 Aligned_cols=251 Identities=10% Similarity=0.035 Sum_probs=162.7
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHhhcCCCC----C--HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhccc----h---
Q 001481 292 WHDYLSFAEKQGDFDWVVKLYERCLIPCAD----Y--PEFWMRYVDFMESKGGREIASYALDRATQIFLKRL----P--- 358 (1071)
Q Consensus 292 W~~y~~~~~~~g~~~~a~~~yerAL~~~p~----~--~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~----p--- 358 (1071)
+..++..+...|+++++...|++++..... . ...+..++..+...|+++.|...+++++.+..... +
T Consensus 494 ~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~ 573 (903)
T PRK04841 494 TSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHE 573 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHH
Confidence 344555566789999999999999864221 1 13445567778889999999999999988633211 1
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHhhcc---C-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHH
Q 001481 359 VIHLFNARYKEQIGDTSAARAAFPESYIDS---D-SRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPL 434 (1071)
Q Consensus 359 ~i~~~~a~~e~~~g~~~~A~~~~~~al~~~---~-p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~ 434 (1071)
.++...+.++...|++++|+..+.+++... . ......+...+.+....|+++.|+..++++........ ......
T Consensus 574 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~-~~~~~~ 652 (903)
T PRK04841 574 FLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGR-YHSDWI 652 (903)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccc-ccHhHh
Confidence 234445667777899999999999987321 1 12344566677788889999999999999988632211 111111
Q ss_pred HHHHH-HHHHHhhcCCHHHHHHHHHHHHhhCCChH----HHHHHHHHHHHHcCCCCchhhHHHHHHHhhccCCcccccCC
Q 001481 435 LYVQF-SRLTYTTTGSADNARDILIDGIKHVPNCK----LLLEELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFS 509 (1071)
Q Consensus 435 l~~~~-A~~~~~~~g~~e~Ar~i~e~al~~~P~~~----~lw~~~~~~e~~~g~~~~a~~~r~l~e~Al~~~~d~~~~l~ 509 (1071)
..... +...+...|+.+.|...+........... .++..++......|+.+++ ..+|++++..... ....
T Consensus 653 ~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A---~~~l~~al~~~~~--~g~~ 727 (903)
T PRK04841 653 ANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEA---EIILEELNENARS--LRLM 727 (903)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHH---HHHHHHHHHHHHH--hCch
Confidence 11111 11222257899999999877665332221 2345667777778887665 4788888753210 0111
Q ss_pred hhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcc
Q 001481 510 LEDVEDISSLYLQQFLDLCGTIHDIRNAWNQHIKLFPHTVR 550 (1071)
Q Consensus 510 ~~~~~~lw~~~l~~~e~~~G~~e~a~~~~~ra~~~~p~~~~ 550 (1071)
. ........+. ......|+.+.|...+.++++++...+-
T Consensus 728 ~-~~a~~~~~la-~a~~~~G~~~~A~~~L~~Al~la~~~g~ 766 (903)
T PRK04841 728 S-DLNRNLILLN-QLYWQQGRKSEAQRVLLEALKLANRTGF 766 (903)
T ss_pred H-HHHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHHhCccch
Confidence 1 2223444555 6778899999999999999999966443
No 139
>KOG3598 consensus Thyroid hormone receptor-associated protein complex, subunit TRAP230 [Transcription]
Probab=98.35 E-value=6.7e-06 Score=100.85 Aligned_cols=12 Identities=17% Similarity=0.299 Sum_probs=7.3
Q ss_pred CcccCCCCcccc
Q 001481 828 NWHEQQNPDRVH 839 (1071)
Q Consensus 828 n~~~~~~~~~~~ 839 (1071)
..|++++.+.++
T Consensus 1963 ~vhq~~p~~~~~ 1974 (2220)
T KOG3598|consen 1963 KVHQRNPLNRKK 1974 (2220)
T ss_pred ceeecCcchHHH
Confidence 466666666654
No 140
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.34 E-value=4.9e-06 Score=74.16 Aligned_cols=97 Identities=19% Similarity=0.202 Sum_probs=67.9
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHH
Q 001481 361 HLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFS 440 (1071)
Q Consensus 361 ~~~~a~~e~~~g~~~~A~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A 440 (1071)
++..+.++...|++++|..+|.+++ ...|....+|..++.++...|++++|+.+|+++++. .+....++..+|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~ 75 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKAL-ELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL------DPDNAKAYYNLG 75 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHH-hcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------CCcchhHHHHHH
Confidence 4455566666777777777777776 445555566777777777777777777777777776 455556777777
Q ss_pred HHHHhhcCCHHHHHHHHHHHHhhCC
Q 001481 441 RLTYTTTGSADNARDILIDGIKHVP 465 (1071)
Q Consensus 441 ~~~~~~~g~~e~Ar~i~e~al~~~P 465 (1071)
.++. ..|++++|+.+|+++++.+|
T Consensus 76 ~~~~-~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 76 LAYY-KLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHH-HHHhHHHHHHHHHHHHccCC
Confidence 7776 77777777777777776665
No 141
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=9.3e-06 Score=87.48 Aligned_cols=120 Identities=12% Similarity=0.020 Sum_probs=104.4
Q ss_pred CCcchHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhC---CHHHHHHH
Q 001481 19 VGFGKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLC---SIDKVVEV 95 (1071)
Q Consensus 19 ~~~~~~~le~al~~nP~d~~~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P~s~~lW~~~a~~e~~~~---~~e~A~~l 95 (1071)
++.-...++..|..||+|.+.|..|+..+... ++...|...|+++++..|++..+|..|++...... ...+++.+
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~--~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~l 215 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMAL--GRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARAL 215 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh--cchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 44446689999999999999999999999988 99999999999999999999999999999876553 34789999
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhcCCC
Q 001481 96 FERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKD 141 (1071)
Q Consensus 96 ferAL~~~P~s~~lW~~y~~~~~~~~~~~e~ar~l~erAL~~~~~~ 141 (1071)
|.++|+.+|.++..-..++.-+... +++.+|...|+..|+.+|.+
T Consensus 216 l~~al~~D~~~iral~lLA~~afe~-g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 216 LRQALALDPANIRALSLLAFAAFEQ-GDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred HHHHHhcCCccHHHHHHHHHHHHHc-ccHHHHHHHHHHHHhcCCCC
Confidence 9999999999998766666666666 99999999999999998865
No 142
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.33 E-value=0.0014 Score=85.64 Aligned_cols=174 Identities=15% Similarity=0.094 Sum_probs=121.6
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHhhcCCC-----CCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhccc-hHHHHH--
Q 001481 292 WHDYLSFAEKQGDFDWVVKLYERCLIPCA-----DYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRL-PVIHLF-- 363 (1071)
Q Consensus 292 W~~y~~~~~~~g~~~~a~~~yerAL~~~p-----~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~-p~i~~~-- 363 (1071)
+..++..+...|++++|...+++++.... .....+..++.++...|+++.|...++++..+..... ...+..
T Consensus 576 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~ 655 (903)
T PRK04841 576 LRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANA 655 (903)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHH
Confidence 44455566677999999999999986422 1234555577888889999999999999987532211 111111
Q ss_pred ---HHHHHHHhCCHHHHHHHHHHHhhccChh----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHH
Q 001481 364 ---NARYKEQIGDTSAARAAFPESYIDSDSR----FIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLY 436 (1071)
Q Consensus 364 ---~a~~e~~~g~~~~A~~~~~~al~~~~p~----~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~ 436 (1071)
........|+.+.|...+..... .... ....+..++.++...|++++|..+|++++..............++
T Consensus 656 ~~~~~~~~~~~g~~~~A~~~l~~~~~-~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~ 734 (903)
T PRK04841 656 DKVRLIYWQMTGDKEAAANWLRQAPK-PEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNL 734 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhcCC-CCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHH
Confidence 12333457899999999877652 1111 122355677788889999999999999998753322222344677
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHhhCCCh
Q 001481 437 VQFSRLTYTTTGSADNARDILIDGIKHVPNC 467 (1071)
Q Consensus 437 ~~~A~~~~~~~g~~e~Ar~i~e~al~~~P~~ 467 (1071)
+.+|.++. ..|+.++|+..+.+|++.....
T Consensus 735 ~~la~a~~-~~G~~~~A~~~L~~Al~la~~~ 764 (903)
T PRK04841 735 ILLNQLYW-QQGRKSEAQRVLLEALKLANRT 764 (903)
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHHHhCcc
Confidence 88889887 9999999999999999987543
No 143
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.31 E-value=1e-05 Score=76.93 Aligned_cols=106 Identities=15% Similarity=0.119 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHhhccChhh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHH
Q 001481 359 VIHLFNARYKEQIGDTSAARAAFPESYIDSDSRF---IEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLL 435 (1071)
Q Consensus 359 ~i~~~~a~~e~~~g~~~~A~~~~~~al~~~~p~~---~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l 435 (1071)
.+++..+..+.+.|++++|...|.+++ ...|++ ..+++.++.++.+.|+++.|..+|++++...+ ..+..+.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p---~~~~~~~~ 78 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFL-KKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYP---KSPKAPDA 78 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH-HHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCC---CCCcccHH
Confidence 456666777777888888888888887 334433 45677788888888888888888888887621 11224667
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHhhCCChHH
Q 001481 436 YVQFSRLTYTTTGSADNARDILIDGIKHVPNCKL 469 (1071)
Q Consensus 436 ~~~~A~~~~~~~g~~e~Ar~i~e~al~~~P~~~~ 469 (1071)
+..+|.++. ..|++++|.++|+++++.+|++..
T Consensus 79 ~~~~~~~~~-~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 79 LLKLGMSLQ-ELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HHHHHHHHH-HhCChHHHHHHHHHHHHHCcCChh
Confidence 888888887 888888888888888888887765
No 144
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.28 E-value=0.0019 Score=70.08 Aligned_cols=127 Identities=13% Similarity=0.007 Sum_probs=65.8
Q ss_pred chHHHHHHHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHH---HHHHHHHhhhccCCCcH
Q 001481 357 LPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTY---KEALETAAEQRKFHTLP 433 (1071)
Q Consensus 357 ~p~i~~~~a~~e~~~g~~~~A~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~~y---~~Al~~~~~~~~~p~~~ 433 (1071)
.|+..+.++-++.+.+++.+|..+.+ +++|..+.-|+..+.....+|.--..++-. +.-+.++++....-++-
T Consensus 284 IPEARlNL~iYyL~q~dVqeA~~L~K----dl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTI 359 (557)
T KOG3785|consen 284 IPEARLNLIIYYLNQNDVQEAISLCK----DLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTI 359 (557)
T ss_pred ChHhhhhheeeecccccHHHHHHHHh----hcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccc
Confidence 67888888888899999999998865 567777777776666666555433333222 22222322110000000
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCCCchh
Q 001481 434 LLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLLLEELIKFTMVHGGRSHIS 488 (1071)
Q Consensus 434 ~l~~~~A~~~~~~~g~~e~Ar~i~e~al~~~P~~~~lw~~~~~~e~~~g~~~~a~ 488 (1071)
.-.-.+|.++. ....+++...++...-..+-++..+-.+|+......|+..+++
T Consensus 360 pGRQsmAs~fF-L~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaE 413 (557)
T KOG3785|consen 360 PGRQSMASYFF-LSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAE 413 (557)
T ss_pred cchHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHH
Confidence 01112222222 2334455544444443344555555555555555555555543
No 145
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.25 E-value=3.9e-05 Score=85.50 Aligned_cols=140 Identities=16% Similarity=0.118 Sum_probs=96.9
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHhhccc-----hHHHHHHHHHHHHh-CCHHHHHHHHHHHhhcc----C-hhhH
Q 001481 325 FWMRYVDFMESKGGREIASYALDRATQIFLKRL-----PVIHLFNARYKEQI-GDTSAARAAFPESYIDS----D-SRFI 393 (1071)
Q Consensus 325 lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~-----p~i~~~~a~~e~~~-g~~~~A~~~~~~al~~~----~-p~~~ 393 (1071)
.|...+..+.+ +++++|+.+|++|+.++.... ..++...|.+++.. |++++|++.|.+|++.. . ....
T Consensus 77 ~~~~Aa~~~k~-~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~ 155 (282)
T PF14938_consen 77 AYEEAANCYKK-GDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAA 155 (282)
T ss_dssp HHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHh-hCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHH
Confidence 33344444444 388999999999999865422 24666778888887 99999999999998421 1 1335
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcc-CCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCC
Q 001481 394 EKVTFKANMERRLGNFVAACDTYKEALETAAEQRK-FHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPN 466 (1071)
Q Consensus 394 ~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~-~p~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~~~P~ 466 (1071)
..+...+.+..+.|++++|+.+|++.+........ .......++..+.+.. ..||+..|++.|++....+|.
T Consensus 156 ~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L-~~~D~v~A~~~~~~~~~~~~~ 228 (282)
T PF14938_consen 156 ECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHL-AMGDYVAARKALERYCSQDPS 228 (282)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHH-HTT-HHHHHHHHHHHGTTSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCC
Confidence 66889999999999999999999999875221111 1112245566666665 899999999999999988874
No 146
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.21 E-value=6.3e-06 Score=70.57 Aligned_cols=67 Identities=15% Similarity=0.123 Sum_probs=56.6
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhhcC-CHHHHHHHHHHHHhhCC
Q 001481 392 FIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTG-SADNARDILIDGIKHVP 465 (1071)
Q Consensus 392 ~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~g-~~e~Ar~i~e~al~~~P 465 (1071)
.+.+|...|.++...|++++|+..|++|++. +|.++.+|..+|.++. ..| ++++|++.|+++++.+|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~------~p~~~~~~~~~g~~~~-~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIEL------DPNNAEAYYNLGLAYM-KLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH------STTHHHHHHHHHHHHH-HTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCCHHHHHHHHHHHH-HhCccHHHHHHHHHHHHHcCc
Confidence 3567888888888888888888888888888 7888888888888887 777 68888888888888876
No 147
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.14 E-value=2.1e-05 Score=69.94 Aligned_cols=97 Identities=12% Similarity=0.100 Sum_probs=83.5
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 001481 39 EWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSM 118 (1071)
Q Consensus 39 ~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P~s~~lW~~~a~~e~~~~~~e~A~~lferAL~~~P~s~~lW~~y~~~~~ 118 (1071)
.|..++..+... ++++++..+|+++++..|.+...|..++......+++++|..+|++++...|.+..+|..++.++.
T Consensus 2 ~~~~~a~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (100)
T cd00189 2 ALLNLGNLYYKL--GDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHH--hcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Confidence 466677766666 889999999999999999998899999999988899999999999999999988889988888888
Q ss_pred hhCCChhHHHHHHHHHHHhc
Q 001481 119 STFEDPNDVRRLFKRALSFV 138 (1071)
Q Consensus 119 ~~~~~~e~ar~l~erAL~~~ 138 (1071)
.. +++++|...|+++++..
T Consensus 80 ~~-~~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 80 KL-GKYEEALEAYEKALELD 98 (100)
T ss_pred HH-HhHHHHHHHHHHHHccC
Confidence 77 88889999998887654
No 148
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.14 E-value=7.3e-05 Score=74.46 Aligned_cols=117 Identities=18% Similarity=0.107 Sum_probs=97.8
Q ss_pred HhCCHHHHHHHHHHhhcCCCCC---HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhccc---hHHHHHHHHHHHHhCCH
Q 001481 301 KQGDFDWVVKLYERCLIPCADY---PEFWMRYVDFMESKGGREIASYALDRATQIFLKRL---PVIHLFNARYKEQIGDT 374 (1071)
Q Consensus 301 ~~g~~~~a~~~yerAL~~~p~~---~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~---p~i~~~~a~~e~~~g~~ 374 (1071)
..++...+...+++.+...|.. ...++.++..+...|++++|...|++++... ++. +.+++.++.++...|++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-~d~~l~~~a~l~LA~~~~~~~~~ 101 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA-PDPELKPLARLRLARILLQQGQY 101 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-CCHHHHHHHHHHHHHHHHHcCCH
Confidence 4678888989999999888887 6788889999999999999999999999852 222 34677788999999999
Q ss_pred HHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001481 375 SAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEAL 420 (1071)
Q Consensus 375 ~~A~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al 420 (1071)
++|+.++.... -.+-...++...++++.+.|++++|+..|++||
T Consensus 102 d~Al~~L~~~~--~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 102 DEALATLQQIP--DEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHhcc--CcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 99999997643 233445678889999999999999999999985
No 149
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.13 E-value=0.0072 Score=70.85 Aligned_cols=223 Identities=14% Similarity=0.170 Sum_probs=118.5
Q ss_pred HHHHHHHHhCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhccch-HHHHHHHHHHHHhC
Q 001481 294 DYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLP-VIHLFNARYKEQIG 372 (1071)
Q Consensus 294 ~y~~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p-~i~~~~a~~e~~~g 372 (1071)
..++.+...|+++.|..+|-++ ++....+..|-+.|+++.|..+-++... |... .+++.-+.-+.+.|
T Consensus 770 ~iadhyan~~dfe~ae~lf~e~--------~~~~dai~my~k~~kw~da~kla~e~~~---~e~t~~~yiakaedldehg 838 (1636)
T KOG3616|consen 770 EIADHYANKGDFEIAEELFTEA--------DLFKDAIDMYGKAGKWEDAFKLAEECHG---PEATISLYIAKAEDLDEHG 838 (1636)
T ss_pred HHHHHhccchhHHHHHHHHHhc--------chhHHHHHHHhccccHHHHHHHHHHhcC---chhHHHHHHHhHHhHHhhc
Confidence 3445556678888888888776 3334455556678888877666555432 1111 34555556667788
Q ss_pred CHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhhcCCHHH
Q 001481 373 DTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADN 452 (1071)
Q Consensus 373 ~~~~A~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~g~~e~ 452 (1071)
+|.+|..+|-..- .|+. .+.++.++|..|..+++.++--- .........+|.-++ ..|++..
T Consensus 839 kf~eaeqlyiti~---~p~~------aiqmydk~~~~ddmirlv~k~h~--------d~l~dt~~~f~~e~e-~~g~lka 900 (1636)
T KOG3616|consen 839 KFAEAEQLYITIG---EPDK------AIQMYDKHGLDDDMIRLVEKHHG--------DHLHDTHKHFAKELE-AEGDLKA 900 (1636)
T ss_pred chhhhhheeEEcc---CchH------HHHHHHhhCcchHHHHHHHHhCh--------hhhhHHHHHHHHHHH-hccChhH
Confidence 8888888776432 2332 24556666666666665554321 122344455555544 5566655
Q ss_pred HHHHHHHHHhhCC-----ChHHHHHHHHHHHHHcCCCCc-----------------hh--hHHHHHHHhhccCCcc----
Q 001481 453 ARDILIDGIKHVP-----NCKLLLEELIKFTMVHGGRSH-----------------IS--IVDAVISNALYSRPDV---- 504 (1071)
Q Consensus 453 Ar~i~e~al~~~P-----~~~~lw~~~~~~e~~~g~~~~-----------------a~--~~r~l~e~Al~~~~d~---- 504 (1071)
|...|-+|-.... ....+|....++.+..|.... .+ +--.+++.++....|.
T Consensus 901 ae~~flea~d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd 980 (1636)
T KOG3616|consen 901 AEEHFLEAGDFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFD 980 (1636)
T ss_pred HHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchh
Confidence 5555444322111 122344444333333222110 00 0011222222211110
Q ss_pred ----cccCC-hhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 001481 505 ----LKVFS-LEDVEDISSLYLQQFLDLCGTIHDIRNAWNQHIKLFP 546 (1071)
Q Consensus 505 ----~~~l~-~~~~~~lw~~~l~~~e~~~G~~e~a~~~~~ra~~~~p 546 (1071)
...+. .+....+...+. -|.++-|.+++|.+.|-+++++.-
T Consensus 981 ~afdlari~~k~k~~~vhlk~a-~~ledegk~edaskhyveaiklnt 1026 (1636)
T KOG3616|consen 981 FAFDLARIAAKDKMGEVHLKLA-MFLEDEGKFEDASKHYVEAIKLNT 1026 (1636)
T ss_pred hHHHHHHHhhhccCccchhHHh-hhhhhccchhhhhHhhHHHhhccc
Confidence 00111 122235667788 888999999999999999999863
No 150
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.12 E-value=4.3e-05 Score=72.61 Aligned_cols=98 Identities=14% Similarity=0.071 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhccc---hHHHHHHHHHHHHhCCHHHHHHHHHHHhhccChh---hHHHH
Q 001481 323 PEFWMRYVDFMESKGGREIASYALDRATQIFLKRL---PVIHLFNARYKEQIGDTSAARAAFPESYIDSDSR---FIEKV 396 (1071)
Q Consensus 323 ~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~---p~i~~~~a~~e~~~g~~~~A~~~~~~al~~~~p~---~~~~w 396 (1071)
++.++..+..+...|++++|...|++++.. .|.. +.+++.++.++...|++++|..+|++++ ...|+ ...+|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~p~~~~~~~~~ 79 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKK-YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVV-KKYPKSPKAPDAL 79 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHH-HHCCCCCcccHHH
Confidence 356777777777778888888888777765 3332 3567777777777888888888888777 33444 25667
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001481 397 TFKANMERRLGNFVAACDTYKEALET 422 (1071)
Q Consensus 397 ~~~a~le~~~g~~~~A~~~y~~Al~~ 422 (1071)
...+.++...|++++|+.+|+++++.
T Consensus 80 ~~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 80 LKLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 77777777788888888888888877
No 151
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=4.2e-05 Score=82.53 Aligned_cols=119 Identities=18% Similarity=0.118 Sum_probs=107.6
Q ss_pred CHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhC---CHHHHHHH
Q 001481 304 DFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIG---DTSAARAA 380 (1071)
Q Consensus 304 ~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g---~~~~A~~~ 380 (1071)
+.++.+.-.+.-|..+|.+.+-|..++.+|...|+++.|...|.+|+++ .+++|+++..|++.+.... ...+++.+
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL-~g~n~~~~~g~aeaL~~~a~~~~ta~a~~l 215 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRL-AGDNPEILLGLAEALYYQAGQQMTAKARAL 215 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 4678888999999999999999999999999999999999999999997 8899999999999765533 34588999
Q ss_pred HHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q 001481 381 FPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAA 424 (1071)
Q Consensus 381 ~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~ 424 (1071)
|++++ ..+|.++++...++.-+...|++.+|...++..+++++
T Consensus 216 l~~al-~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 216 LRQAL-ALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred HHHHH-hcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 99999 78999999999999888899999999999999999964
No 152
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.08 E-value=5.6e-05 Score=90.64 Aligned_cols=142 Identities=17% Similarity=0.035 Sum_probs=107.7
Q ss_pred ChhHHHHHHHHHHHHH--HhC---CHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhC--------CHHHHHHHHHHHHH
Q 001481 285 DDIQLKNWHDYLSFAE--KQG---DFDWVVKLYERCLIPCADYPEFWMRYVDFMESKG--------GREIASYALDRATQ 351 (1071)
Q Consensus 285 ~p~~~~~W~~y~~~~~--~~g---~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g--------~~e~A~~il~rAl~ 351 (1071)
.|.+.+.|-.|..-.. ..+ +..+|+.+|++|+..+|++..+|-.++..+.... ....+...+++++.
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 3455566666655432 222 4678999999999999999988888766554331 13445555566555
Q ss_pred H-hhccchHHHHHHHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCC
Q 001481 352 I-FLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFH 430 (1071)
Q Consensus 352 ~-~~~~~p~i~~~~a~~e~~~g~~~~A~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p 430 (1071)
+ ..+..|.+|..++......|++++|...|++|+ +++| +...|+.++.++...|+.++|...|++|+.+ .|
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl-~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L------~P 484 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAI-DLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNL------RP 484 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHH-HcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CC
Confidence 3 133456788888888888999999999999999 7888 4789999999999999999999999999999 66
Q ss_pred CcHH
Q 001481 431 TLPL 434 (1071)
Q Consensus 431 ~~~~ 434 (1071)
..+.
T Consensus 485 ~~pt 488 (517)
T PRK10153 485 GENT 488 (517)
T ss_pred CCch
Confidence 6664
No 153
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.07 E-value=4e-05 Score=85.24 Aligned_cols=198 Identities=14% Similarity=0.131 Sum_probs=137.4
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHhhcCC-C-CCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhccchHHHHHHHH
Q 001481 289 LKNWHDYLSFAEKQGDFDWVVKLYERCLIPC-A-DYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNAR 366 (1071)
Q Consensus 289 ~~~W~~y~~~~~~~g~~~~a~~~yerAL~~~-p-~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~ 366 (1071)
...+..|+.|+....+.+.++..++..+... . .+..+-+.-|.++...|++++|+.++.++- ..+.......
T Consensus 66 l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~~------~lE~~al~Vq 139 (290)
T PF04733_consen 66 LQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKGG------SLELLALAVQ 139 (290)
T ss_dssp CHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTTT------CHHHHHHHHH
T ss_pred HHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHccC------cccHHHHHHH
Confidence 4566777777765556667777776666432 2 334444555667777788998888887652 3345556667
Q ss_pred HHHHhCCHHHHHHHHHHHhhccChhhH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHH
Q 001481 367 YKEQIGDTSAARAAFPESYIDSDSRFI--EKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTY 444 (1071)
Q Consensus 367 ~e~~~g~~~~A~~~~~~al~~~~p~~~--~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~ 444 (1071)
++.+.+++|.|.+.++++. ..+.+.. .+...|..+..-.+.+.+|.-+|++..+. ++.++.+....|.+..
T Consensus 140 i~L~~~R~dlA~k~l~~~~-~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~------~~~t~~~lng~A~~~l 212 (290)
T PF04733_consen 140 ILLKMNRPDLAEKELKNMQ-QIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK------FGSTPKLLNGLAVCHL 212 (290)
T ss_dssp HHHHTT-HHHHHHHHHHHH-CCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC------S--SHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHH-hcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc------cCCCHHHHHHHHHHHH
Confidence 7889999999999999986 5554432 23334444444445689999999997655 5678899988998887
Q ss_pred hhcCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCCCchhhHHHHHHHhhccCC
Q 001481 445 TTTGSADNARDILIDGIKHVPNCKLLLEELIKFTMVHGGRSHISIVDAVISNALYSRP 502 (1071)
Q Consensus 445 ~~~g~~e~Ar~i~e~al~~~P~~~~lw~~~~~~e~~~g~~~~a~~~r~l~e~Al~~~~ 502 (1071)
..|++++|.++++.++..+|++++++.+.+-+....|+.... ++.++......+|
T Consensus 213 -~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~--~~~~l~qL~~~~p 267 (290)
T PF04733_consen 213 -QLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEA--AERYLSQLKQSNP 267 (290)
T ss_dssp -HCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHH--HHHHHHHCHHHTT
T ss_pred -HhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhH--HHHHHHHHHHhCC
Confidence 999999999999999999999999999999999888987432 2356666554444
No 154
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.06 E-value=1.2e-05 Score=67.99 Aligned_cols=62 Identities=19% Similarity=0.270 Sum_probs=40.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCh
Q 001481 399 KANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNC 467 (1071)
Q Consensus 399 ~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~~~P~~ 467 (1071)
.+..+...|++++|+.+|+++++. .|.++.+|..+|.++. ..|++++|+.+|+++++.+|++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~------~P~~~~a~~~lg~~~~-~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQ------DPDNPEAWYLLGRILY-QQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCC------STTHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH------CCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCcCC
Confidence 455556666666666666666666 5666666666666666 6666777776677766666655
No 155
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=7.8e-05 Score=83.11 Aligned_cols=128 Identities=13% Similarity=0.134 Sum_probs=57.1
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHHHhhccch--------------HHHHHHHHHHHHhCCHHHHHHHHHHHhhccChhhHH
Q 001481 329 YVDFMESKGGREIASYALDRATQIFLKRLP--------------VIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIE 394 (1071)
Q Consensus 329 ya~~l~~~g~~e~A~~il~rAl~~~~~~~p--------------~i~~~~a~~e~~~g~~~~A~~~~~~al~~~~p~~~~ 394 (1071)
.+.++.+.|++..|..-|+||+..+.-+.. .+++..|.++.+++++.+|+....++| ++.|++.+
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvL-e~~~~N~K 292 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVL-ELDPNNVK 292 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHH-hcCCCchh
Confidence 344555556666666666666653110000 233444444444444444444444444 44444444
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhh
Q 001481 395 KVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKH 463 (1071)
Q Consensus 395 ~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~~ 463 (1071)
+.++.+..+...|+++.|+..|.+|+++ .|.+..+-..++.+-.......++.+++|.+++..
T Consensus 293 ALyRrG~A~l~~~e~~~A~~df~ka~k~------~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 293 ALYRRGQALLALGEYDLARDDFQKALKL------EPSNKAARAELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4444444444444444444444444444 34444444444433332222233334444444443
No 156
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.05 E-value=8.8e-05 Score=76.21 Aligned_cols=120 Identities=14% Similarity=0.069 Sum_probs=85.7
Q ss_pred CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhccc---hHHHHHHHHHHHHhCCHHHHHHHHHHHhhccChhhHHHH
Q 001481 320 ADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRL---PVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKV 396 (1071)
Q Consensus 320 p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~---p~i~~~~a~~e~~~g~~~~A~~~~~~al~~~~p~~~~~w 396 (1071)
+....+++.++..+...|++++|...|++|+++ .+.. ..++..++.++...|++++|+.+|.+++ ...|+....+
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~ 109 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKL-EEDPNDRSYILYNMGIIYASNGEHDKALEYYHQAL-ELNPKQPSAL 109 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-hhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCcccHHHH
Confidence 455666777788888888888888888888875 2222 2466677777777778888888877777 5667777777
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCChH
Q 001481 397 TFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCK 468 (1071)
Q Consensus 397 ~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~~~P~~~ 468 (1071)
..++.++...|....+..-+++|+.. +++|.++|+++++..|++.
T Consensus 110 ~~lg~~~~~~g~~~~a~~~~~~A~~~---------------------------~~~A~~~~~~a~~~~p~~~ 154 (172)
T PRK02603 110 NNIAVIYHKRGEKAEEAGDQDEAEAL---------------------------FDKAAEYWKQAIRLAPNNY 154 (172)
T ss_pred HHHHHHHHHcCChHhHhhCHHHHHHH---------------------------HHHHHHHHHHHHhhCchhH
Confidence 77777777777766666555544332 4678899999999999874
No 157
>PRK11906 transcriptional regulator; Provisional
Probab=98.04 E-value=0.00016 Score=82.69 Aligned_cols=147 Identities=12% Similarity=0.040 Sum_probs=119.1
Q ss_pred CHHHHHHHHHHhh---cCCCCCHHHHHHHHHHHHhh---C------CHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHh
Q 001481 304 DFDWVVKLYERCL---IPCADYPEFWMRYVDFMESK---G------GREIASYALDRATQIFLKRLPVIHLFNARYKEQI 371 (1071)
Q Consensus 304 ~~~~a~~~yerAL---~~~p~~~~lW~~ya~~l~~~---g------~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~ 371 (1071)
+.++|..+|++|+ ..+|.+...|..++.+++.. | ...+|+...+||+++ .+.+|.++...+......
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAvel-d~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDI-TTVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHhh
Confidence 3568899999999 88999988887777765543 2 246788999999997 788888888888888888
Q ss_pred CCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcH-----HHHHHHHHHHHhh
Q 001481 372 GDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLP-----LLYVQFSRLTYTT 446 (1071)
Q Consensus 372 g~~~~A~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~-----~l~~~~A~~~~~~ 446 (1071)
++++.|...|++|+ .++|+++.+|+.++.+..-.|+.++|+..+++|+.+ .|... ++|+. + + .
T Consensus 352 ~~~~~a~~~f~rA~-~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL------sP~~~~~~~~~~~~~---~-~-~ 419 (458)
T PRK11906 352 GQAKVSHILFEQAK-IHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQL------EPRRRKAVVIKECVD---M-Y-V 419 (458)
T ss_pred cchhhHHHHHHHHh-hcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc------CchhhHHHHHHHHHH---H-H-c
Confidence 89999999999999 899999999999999999999999999999999998 45433 33332 2 2 5
Q ss_pred cCCHHHHHHHHHHHHhh
Q 001481 447 TGSADNARDILIDGIKH 463 (1071)
Q Consensus 447 ~g~~e~Ar~i~e~al~~ 463 (1071)
...+++|.+.|-+-.+.
T Consensus 420 ~~~~~~~~~~~~~~~~~ 436 (458)
T PRK11906 420 PNPLKNNIKLYYKETES 436 (458)
T ss_pred CCchhhhHHHHhhcccc
Confidence 67788888887765543
No 158
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.04 E-value=0.00014 Score=87.31 Aligned_cols=144 Identities=12% Similarity=-0.030 Sum_probs=104.1
Q ss_pred cCCCCCHHHHHHHHHHHH--hhC---CHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHh--------CCHHHHHHHHHH
Q 001481 317 IPCADYPEFWMRYVDFME--SKG---GREIASYALDRATQIFLKRLPVIHLFNARYKEQI--------GDTSAARAAFPE 383 (1071)
Q Consensus 317 ~~~p~~~~lW~~ya~~l~--~~g---~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~--------g~~~~A~~~~~~ 383 (1071)
...|.+.++|-.|..-.. ..+ .++.|+.+|++|+++ .|++...|-.++..+... .++..+.....+
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l-dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS-EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 345666677766655432 222 367899999999997 565554444433322221 123455666666
Q ss_pred Hhhc-cChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Q 001481 384 SYID-SDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIK 462 (1071)
Q Consensus 384 al~~-~~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~ 462 (1071)
++.. .++....+|..++......|++++|...|++|+++ .+ ++..|+.+|.++. ..|+.++|...|++|+.
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L------~p-s~~a~~~lG~~~~-~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL------EM-SWLNYVLLGKVYE-LKGDNRLAADAYSTAFN 481 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CC-CHHHHHHHHHHHH-HcCCHHHHHHHHHHHHh
Confidence 5521 25556678888887777789999999999999999 56 5789999999998 99999999999999999
Q ss_pred hCCChHH
Q 001481 463 HVPNCKL 469 (1071)
Q Consensus 463 ~~P~~~~ 469 (1071)
++|..+.
T Consensus 482 L~P~~pt 488 (517)
T PRK10153 482 LRPGENT 488 (517)
T ss_pred cCCCCch
Confidence 9998765
No 159
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.98 E-value=0.00015 Score=74.15 Aligned_cols=117 Identities=12% Similarity=0.005 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhcc---chHHHHHHHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHH
Q 001481 323 PEFWMRYVDFMESKGGREIASYALDRATQIFLKR---LPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFK 399 (1071)
Q Consensus 323 ~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~---~p~i~~~~a~~e~~~g~~~~A~~~~~~al~~~~p~~~~~w~~~ 399 (1071)
..+|+..+..+...|++++|...|++|+.+ .++ .+.+|..++.++...|++++|+..|.+++ .+.|.....|...
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l-~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al-~~~~~~~~~~~~l 112 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRL-EIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQAL-ERNPFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCcCcHHHHHHH
Confidence 566677777776777777777777777665 222 12356666666666666666666666666 4555555555555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCChH
Q 001481 400 ANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCK 468 (1071)
Q Consensus 400 a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~~~P~~~ 468 (1071)
+.++...|.... ..+.+.. ....+++|..+|++++...|.+.
T Consensus 113 a~i~~~~~~~~~--------------------------~~g~~~~-A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 113 AVICHYRGEQAI--------------------------EQGDSEI-AEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHHHHhhHHHH--------------------------HcccHHH-HHHHHHHHHHHHHHHHHhCcccH
Confidence 555544332111 1111111 22345678888889998998654
No 160
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.98 E-value=0.00012 Score=74.79 Aligned_cols=86 Identities=14% Similarity=-0.043 Sum_probs=70.7
Q ss_pred hhHHHHHHHHHHHHHHhCCHHHHHHHHHHhhcCCCCC---HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhccchHHHH
Q 001481 286 DIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADY---PEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHL 362 (1071)
Q Consensus 286 p~~~~~W~~y~~~~~~~g~~~~a~~~yerAL~~~p~~---~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~ 362 (1071)
......|...+......|+++.|...|++|+...++. ..+|..++.++...|++++|+..|++|+.+ .+.....+.
T Consensus 32 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~-~~~~~~~~~ 110 (168)
T CHL00033 32 EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER-NPFLPQALN 110 (168)
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CcCcHHHHH
Confidence 4556889999999999999999999999999776653 458999999999999999999999999987 555556666
Q ss_pred HHHHHHHHhC
Q 001481 363 FNARYKEQIG 372 (1071)
Q Consensus 363 ~~a~~e~~~g 372 (1071)
..+.++...|
T Consensus 111 ~la~i~~~~~ 120 (168)
T CHL00033 111 NMAVICHYRG 120 (168)
T ss_pred HHHHHHHHhh
Confidence 6666655443
No 161
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.97 E-value=0.1 Score=63.70 Aligned_cols=116 Identities=13% Similarity=0.099 Sum_probs=82.0
Q ss_pred CcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChhHHHHHHH
Q 001481 53 DDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFK 132 (1071)
Q Consensus 53 ~~~~~a~~vyeraL~~~P~s~~lW~~~a~~e~~~~~~e~A~~lferAL~~~P~s~~lW~~y~~~~~~~~~~~e~ar~l~e 132 (1071)
+.+.+|..-..+.++.+|+..-.-..-+-..++.|..++|..+++ ++...+.+-++-+..+.++.+..+..++|..+|+
T Consensus 23 ~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le-~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye 101 (932)
T KOG2053|consen 23 SQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLE-ALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYE 101 (932)
T ss_pred HHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHh-hhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 578899999999999999986554444445567788899986665 5555555666666666666655589999999999
Q ss_pred HHHHhcCCCCCchHHHHHHHHHHHHccCHHHHHHHHH
Q 001481 133 RALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFV 169 (1071)
Q Consensus 133 rAL~~~~~~~~s~~lW~~yi~fe~~~~~~~~a~~iy~ 169 (1071)
+|+...|..-....++.+|++-..-...-..+.++|+
T Consensus 102 ~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK 138 (932)
T KOG2053|consen 102 RANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYK 138 (932)
T ss_pred HHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999888633334566677665543333445556665
No 162
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.96 E-value=0.00024 Score=81.64 Aligned_cols=123 Identities=15% Similarity=0.084 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHH
Q 001481 324 EFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANME 403 (1071)
Q Consensus 324 ~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~~A~~~~~~al~~~~p~~~~~w~~~a~le 403 (1071)
-+--.+..++...++++.|+++|++..+. .|.++...|+++...++-.+|..++.+++ ...|....++...+.|+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~----~pev~~~LA~v~l~~~~E~~AI~ll~~aL-~~~p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRER----DPEVAVLLARVYLLMNEEVEAIRLLNEAL-KENPQDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhc----CCcHHHHHHHHHHhcCcHHHHHHHHHHHH-HhCCCCHHHHHHHHHHH
Confidence 34444566777778899999999998765 68888888898888888899999999999 55777889999999999
Q ss_pred HHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHH
Q 001481 404 RRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILI 458 (1071)
Q Consensus 404 ~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~g~~e~Ar~i~e 458 (1071)
...++++.|..+.++|+.+ .|...+.|..+|.+|. ..|+++.|..+++
T Consensus 245 l~k~~~~lAL~iAk~av~l------sP~~f~~W~~La~~Yi-~~~d~e~ALlaLN 292 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVEL------SPSEFETWYQLAECYI-QLGDFENALLALN 292 (395)
T ss_pred HhcCCHHHHHHHHHHHHHh------CchhHHHHHHHHHHHH-hcCCHHHHHHHHh
Confidence 9999999999999999999 7889999999999998 9999999987655
No 163
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.93 E-value=3.5e-05 Score=65.65 Aligned_cols=66 Identities=18% Similarity=0.229 Sum_probs=57.7
Q ss_pred HHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCChHHHHHHHHH
Q 001481 404 RRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLLLEELIK 476 (1071)
Q Consensus 404 ~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~~~P~~~~lw~~~~~ 476 (1071)
...|++++|+.+|++++.. .|.+..+++.+|.++. ..|++++|+.++++++..+|++..+|..++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~------~p~~~~~~~~la~~~~-~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQR------NPDNPEARLLLAQCYL-KQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHH------TTTSHHHHHHHHHHHH-HTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHH------CCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 3568899999999999998 8889999999999998 9999999999999999999998888877665
No 164
>PRK11906 transcriptional regulator; Provisional
Probab=97.92 E-value=0.00035 Score=79.97 Aligned_cols=135 Identities=11% Similarity=0.024 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHH---HHhhccchHHHHHHHHHHHH---------hCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHc
Q 001481 339 REIASYALDRAT---QIFLKRLPVIHLFNARYKEQ---------IGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRL 406 (1071)
Q Consensus 339 ~e~A~~il~rAl---~~~~~~~p~i~~~~a~~e~~---------~g~~~~A~~~~~~al~~~~p~~~~~w~~~a~le~~~ 406 (1071)
.+.|..+|.||+ .+ .|.+...+...|.+... .....+|+.+-++|+ ++++.++.+....+.+..-.
T Consensus 274 ~~~Al~lf~ra~~~~~l-dp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv-eld~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDI-QTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS-DITTVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHhhcccC-CcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH-hcCCCCHHHHHHHHHHHHhh
Confidence 467888999999 65 44444444444433221 234567888999999 88999888888888877778
Q ss_pred CCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCChH--HHHHHHHHHHHHcC
Q 001481 407 GNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCK--LLLEELIKFTMVHG 482 (1071)
Q Consensus 407 g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~~~P~~~--~lw~~~~~~e~~~g 482 (1071)
|+++.|...|++|+.+ .|+.+.+|...|.++. ..|+.++|++.+++|+++.|.-. .+...|++++...+
T Consensus 352 ~~~~~a~~~f~rA~~L------~Pn~A~~~~~~~~~~~-~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~ 422 (458)
T PRK11906 352 GQAKVSHILFEQAKIH------STDIASLYYYRALVHF-HNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP 422 (458)
T ss_pred cchhhHHHHHHHHhhc------CCccHHHHHHHHHHHH-HcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc
Confidence 8899999999999999 8999999999999988 89999999999999999999754 34445555544433
No 165
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.92 E-value=0.0002 Score=73.50 Aligned_cols=116 Identities=16% Similarity=0.083 Sum_probs=95.4
Q ss_pred ChhHHHHHHHHHHHHHHhCCHHHHHHHHHHhhcCCCCC---HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhccchHHH
Q 001481 285 DDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADY---PEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIH 361 (1071)
Q Consensus 285 ~p~~~~~W~~y~~~~~~~g~~~~a~~~yerAL~~~p~~---~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~ 361 (1071)
.+.....+..++..+...|++++|...|++++...++. ..+|+.++..+...|++++|+..|++|+.+ .|..+..+
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~ 109 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL-NPKQPSAL 109 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CcccHHHH
Confidence 45666778888888889999999999999999765543 578999999999999999999999999997 66667788
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001481 362 LFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALET 422 (1071)
Q Consensus 362 ~~~a~~e~~~g~~~~A~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~ 422 (1071)
..++.++...|+...+..-+..++. .+++|.++|++++..
T Consensus 110 ~~lg~~~~~~g~~~~a~~~~~~A~~---------------------~~~~A~~~~~~a~~~ 149 (172)
T PRK02603 110 NNIAVIYHKRGEKAEEAGDQDEAEA---------------------LFDKAAEYWKQAIRL 149 (172)
T ss_pred HHHHHHHHHcCChHhHhhCHHHHHH---------------------HHHHHHHHHHHHHhh
Confidence 8888888888888777766665541 257788888888887
No 166
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.90 E-value=0.0084 Score=62.28 Aligned_cols=223 Identities=20% Similarity=0.181 Sum_probs=128.6
Q ss_pred CHHHHHHHHHHhhcCCCC--CHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH-hhccchHHHHHHHHHHHHhCCHHHHHHH
Q 001481 304 DFDWVVKLYERCLIPCAD--YPEFWMRYVDFMESKGGREIASYALDRATQI-FLKRLPVIHLFNARYKEQIGDTSAARAA 380 (1071)
Q Consensus 304 ~~~~a~~~yerAL~~~p~--~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~-~~~~~p~i~~~~a~~e~~~g~~~~A~~~ 380 (1071)
....+...+..++...+. ........+..+...+.+..+...+..++.. ..+.....+...+.+....+++..+...
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (291)
T COG0457 38 ELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALEL 117 (291)
T ss_pred hHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHH
Confidence 344455555555555444 3556666666666677777777777666642 1223344566666666667777777777
Q ss_pred HHHHhhccChhhHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHHHhhhccCC---CcHHHHHHHHHHHHhhcCCHHHHHHH
Q 001481 381 FPESYIDSDSRFIEKVTFKAN-MERRLGNFVAACDTYKEALETAAEQRKFH---TLPLLYVQFSRLTYTTTGSADNARDI 456 (1071)
Q Consensus 381 ~~~al~~~~p~~~~~w~~~a~-le~~~g~~~~A~~~y~~Al~~~~~~~~~p---~~~~l~~~~A~~~~~~~g~~e~Ar~i 456 (1071)
+..++ ...+.....+..... ++...|.++.|...|++++.. .+ .....+...+..+. ..++++.|...
T Consensus 118 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~ 189 (291)
T COG0457 118 LEKAL-ALDPDPDLAEALLALGALYELGDYEEALELYEKALEL------DPELNELAEALLALGALLE-ALGRYEEALEL 189 (291)
T ss_pred HHHHH-cCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCccchHHHHHHhhhHHH-HhcCHHHHHHH
Confidence 77776 333333222333333 556667777777777777553 22 23344444444443 56777777777
Q ss_pred HHHHHhhCCC-hHHHHHHHHHHHHHcCCCCchhhHHHHHHHhhccCCcccccCChhhHHHHHHHHHHHHHHhcCCHHHHH
Q 001481 457 LIDGIKHVPN-CKLLLEELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQQFLDLCGTIHDIR 535 (1071)
Q Consensus 457 ~e~al~~~P~-~~~lw~~~~~~e~~~g~~~~a~~~r~l~e~Al~~~~d~~~~l~~~~~~~lw~~~l~~~e~~~G~~e~a~ 535 (1071)
+.++++..+. ....+......+...+....+ ...+..++...++ ....+..... .+. ..|..+.+.
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a---~~~~~~~~~~~~~--------~~~~~~~~~~-~~~-~~~~~~~~~ 256 (291)
T COG0457 190 LEKALKLNPDDDAEALLNLGLLYLKLGKYEEA---LEYYEKALELDPD--------NAEALYNLAL-LLL-ELGRYEEAL 256 (291)
T ss_pred HHHHHhhCcccchHHHHHhhHHHHHcccHHHH---HHHHHHHHhhCcc--------cHHHHhhHHH-HHH-HcCCHHHHH
Confidence 7777777777 566666666666666644444 3666666654331 1122233333 344 666777777
Q ss_pred HHHHHHHHhCCC
Q 001481 536 NAWNQHIKLFPH 547 (1071)
Q Consensus 536 ~~~~ra~~~~p~ 547 (1071)
..+.++++..|.
T Consensus 257 ~~~~~~~~~~~~ 268 (291)
T COG0457 257 EALEKALELDPD 268 (291)
T ss_pred HHHHHHHHhCcc
Confidence 777777777765
No 167
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.90 E-value=0.00018 Score=82.61 Aligned_cols=122 Identities=13% Similarity=0.014 Sum_probs=106.3
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhC
Q 001481 293 HDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIG 372 (1071)
Q Consensus 293 ~~y~~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g 372 (1071)
..++.++...++++.|+.+|++.....| ++++.+|+++...++..+|..++.+++.. .|....++...|+|+...+
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~p---ev~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERDP---EVAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcCC---cHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcC
Confidence 3445566667899999999999988776 47777899888888899999999999986 6666788889999999999
Q ss_pred CHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001481 373 DTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEA 419 (1071)
Q Consensus 373 ~~~~A~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~~y~~A 419 (1071)
+++.|+.+.++++ .+.|+..+.|..++.++...|+++.|..++..+
T Consensus 249 ~~~lAL~iAk~av-~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 249 KYELALEIAKKAV-ELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred CHHHHHHHHHHHH-HhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 9999999999999 789999999999999999999999999776643
No 168
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.89 E-value=6.8e-05 Score=63.29 Aligned_cols=59 Identities=29% Similarity=0.242 Sum_probs=49.7
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001481 363 FNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALET 422 (1071)
Q Consensus 363 ~~a~~e~~~g~~~~A~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~ 422 (1071)
..|..+...|++++|+.+|++++ ...|++..+|+.++.++...|++++|+.+|+++++.
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l-~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQAL-KQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHH-CCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45667778888999999999888 667888889999999888899999999999998887
No 169
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.89 E-value=0.00024 Score=77.65 Aligned_cols=94 Identities=12% Similarity=0.065 Sum_probs=63.9
Q ss_pred hCCHHHHHHHHHHHhhccChhh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhhc
Q 001481 371 IGDTSAARAAFPESYIDSDSRF---IEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTT 447 (1071)
Q Consensus 371 ~g~~~~A~~~~~~al~~~~p~~---~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~ 447 (1071)
.|++++|+..|++.+ ...|+. ..+++.++.++...|++++|+..|+++++..+ ..+..+.+++.+|.++. ..
T Consensus 156 ~~~y~~Ai~af~~fl-~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP---~s~~~~dAl~klg~~~~-~~ 230 (263)
T PRK10803 156 KSRQDDAIVAFQNFV-KKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYP---KSPKAADAMFKVGVIMQ-DK 230 (263)
T ss_pred cCCHHHHHHHHHHHH-HHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC---CCcchhHHHHHHHHHHH-Hc
Confidence 466666766666666 334443 35666666777777777777777777777621 13445677777777776 77
Q ss_pred CCHHHHHHHHHHHHhhCCChHH
Q 001481 448 GSADNARDILIDGIKHVPNCKL 469 (1071)
Q Consensus 448 g~~e~Ar~i~e~al~~~P~~~~ 469 (1071)
|++++|+++|+++++.+|++..
T Consensus 231 g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 231 GDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred CCHHHHHHHHHHHHHHCcCCHH
Confidence 8888888888888888887654
No 170
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.88 E-value=0.00062 Score=67.76 Aligned_cols=125 Identities=8% Similarity=0.092 Sum_probs=98.5
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcCCC---HHHHHHH
Q 001481 40 WTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLC---YGYWRKYADHKARLCSIDKVVEVFERAVQSATYS---VDVWFHY 113 (1071)
Q Consensus 40 W~~li~~~~~~~~~~~~~a~~vyeraL~~~P~s---~~lW~~~a~~e~~~~~~e~A~~lferAL~~~P~s---~~lW~~y 113 (1071)
+..++..+. . ++..++...++++++.+|.+ ...++.+++.....|++++|..+|++++...|.. ...++.+
T Consensus 15 y~~~~~~~~-~--~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 15 YEQALQALQ-A--GDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHH-C--CCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 344444333 3 78899999999999999999 5677778888899999999999999999987543 2366677
Q ss_pred HHHHHhhCCChhHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHccCHHHHHHHHHHHh
Q 001481 114 CSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTL 172 (1071)
Q Consensus 114 ~~~~~~~~~~~e~ar~l~erAL~~~~~~~~s~~lW~~yi~fe~~~~~~~~a~~iy~ral 172 (1071)
+.+++.. +++++|..+++.. .........|....++....|+.+.++..|+++|
T Consensus 92 A~~~~~~-~~~d~Al~~L~~~----~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 92 ARILLQQ-GQYDEALATLQQI----PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHc-CCHHHHHHHHHhc----cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 7777777 9999999999662 2222245688888899999999999999999875
No 171
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.87 E-value=7.8e-05 Score=63.70 Aligned_cols=67 Identities=15% Similarity=0.148 Sum_probs=48.1
Q ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHhcC
Q 001481 36 DFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLC-SIDKVVEVFERAVQSAT 104 (1071)
Q Consensus 36 d~~~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P~s~~lW~~~a~~e~~~~-~~e~A~~lferAL~~~P 104 (1071)
+...|..++..+... +++++|...|+++++.+|.++.+|..++..+...+ ++++|+..|++|++..|
T Consensus 2 ~a~~~~~~g~~~~~~--~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQ--GDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHT--THHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 456677777766666 77777777777777777777777777777777776 57777777777777665
No 172
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.86 E-value=0.0032 Score=65.55 Aligned_cols=201 Identities=16% Similarity=0.117 Sum_probs=149.7
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHhhc--CCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhccchHHHHHHHH-
Q 001481 290 KNWHDYLSFAEKQGDFDWVVKLYERCLI--PCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNAR- 366 (1071)
Q Consensus 290 ~~W~~y~~~~~~~g~~~~a~~~yerAL~--~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~- 366 (1071)
.............+++..+...+..++. ..+.....|...+.++...+.+..+...+..++.. .+.....+.....
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALAL-DPDPDLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcC-CCCcchHHHHHHHH
Confidence 3455556666677888999999999887 67888899999999999999999999999998874 2222233444444
Q ss_pred HHHHhCCHHHHHHHHHHHhhccCh---hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCC-cHHHHHHHHHH
Q 001481 367 YKEQIGDTSAARAAFPESYIDSDS---RFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHT-LPLLYVQFSRL 442 (1071)
Q Consensus 367 ~e~~~g~~~~A~~~~~~al~~~~p---~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~-~~~l~~~~A~~ 442 (1071)
++...|+++.|...|.+++. ..+ .....+...+......++++.+...+.+++.. .+. ....+..++..
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~~~~ 211 (291)
T COG0457 139 ALYELGDYEEALELYEKALE-LDPELNELAEALLALGALLEALGRYEEALELLEKALKL------NPDDDAEALLNLGLL 211 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHh-cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh------CcccchHHHHHhhHH
Confidence 67789999999999999984 555 34555666666666788999999999999998 455 56778888888
Q ss_pred HHhhcCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCCCchhhHHHHHHHhhccCC
Q 001481 443 TYTTTGSADNARDILIDGIKHVPNCKLLLEELIKFTMVHGGRSHISIVDAVISNALYSRP 502 (1071)
Q Consensus 443 ~~~~~g~~e~Ar~i~e~al~~~P~~~~lw~~~~~~e~~~g~~~~a~~~r~l~e~Al~~~~ 502 (1071)
+. ..++++.|...+..++...|.....+..........+....+ ...+.+++...+
T Consensus 212 ~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 267 (291)
T COG0457 212 YL-KLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEA---LEALEKALELDP 267 (291)
T ss_pred HH-HcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHH---HHHHHHHHHhCc
Confidence 77 888999999999999999998555555444444444434443 477777776443
No 173
>KOG3598 consensus Thyroid hormone receptor-associated protein complex, subunit TRAP230 [Transcription]
Probab=97.86 E-value=5.1e-05 Score=93.48 Aligned_cols=9 Identities=11% Similarity=0.482 Sum_probs=4.9
Q ss_pred hhHHHHHHH
Q 001481 124 PNDVRRLFK 132 (1071)
Q Consensus 124 ~e~ar~l~e 132 (1071)
.+.+..+||
T Consensus 968 ~dq~aqvfe 976 (2220)
T KOG3598|consen 968 HDQAAQVFE 976 (2220)
T ss_pred cHHHHHHHH
Confidence 345555555
No 174
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.85 E-value=4.4e-05 Score=68.21 Aligned_cols=79 Identities=22% Similarity=0.269 Sum_probs=34.3
Q ss_pred CCHHHHHHHHHHhhcCCCC--CHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhCCHHHHHHH
Q 001481 303 GDFDWVVKLYERCLIPCAD--YPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAA 380 (1071)
Q Consensus 303 g~~~~a~~~yerAL~~~p~--~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~~A~~~ 380 (1071)
|+++.|+.+|++++...|. ...+|+.+|..+.+.|++++|..++++ ... .+..+.+++.+|.++...|++++|+.+
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~-~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKL-DPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH-HHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC-CCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 4444455555555544442 233444445545555555555544444 221 222233333444444444444444444
Q ss_pred HHH
Q 001481 381 FPE 383 (1071)
Q Consensus 381 ~~~ 383 (1071)
|++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 443
No 175
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.83 E-value=6.1e-05 Score=64.15 Aligned_cols=63 Identities=13% Similarity=0.005 Sum_probs=55.9
Q ss_pred CcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 001481 53 DDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCS 115 (1071)
Q Consensus 53 ~~~~~a~~vyeraL~~~P~s~~lW~~~a~~e~~~~~~e~A~~lferAL~~~P~s~~lW~~y~~ 115 (1071)
|++++|..+|++++..+|++..+|..++..+++.|++++|+.+|++++...|.+..+|..+++
T Consensus 5 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 5 GDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp THHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 789999999999999999999999999999999999999999999999999988888876654
No 176
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.81 E-value=0.0035 Score=62.61 Aligned_cols=134 Identities=16% Similarity=0.056 Sum_probs=107.5
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHH
Q 001481 361 HLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFS 440 (1071)
Q Consensus 361 ~~~~a~~e~~~g~~~~A~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A 440 (1071)
.+.++..+.+.|++.+|+..|..++.-+.-+..-+.+.+++.....+++..|...+++..+.. + ....++-.+.+|
T Consensus 92 r~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~-p---a~r~pd~~Ll~a 167 (251)
T COG4700 92 RYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN-P---AFRSPDGHLLFA 167 (251)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC-C---ccCCCCchHHHH
Confidence 455667778899999999999999866666778889999998889999999999999988872 1 234567778889
Q ss_pred HHHHhhcCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCCCchh-hHHHHHHHhhcc
Q 001481 441 RLTYTTTGSADNARDILIDGIKHVPNCKLLLEELIKFTMVHGGRSHIS-IVDAVISNALYS 500 (1071)
Q Consensus 441 ~~~~~~~g~~e~Ar~i~e~al~~~P~~~~lw~~~~~~e~~~g~~~~a~-~~r~l~e~Al~~ 500 (1071)
+.+. ..|.+..|+..|+-++..+|+. ..-..|..++.+.|...+++ .++++++++...
T Consensus 168 R~la-a~g~~a~Aesafe~a~~~ypg~-~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~~r~ 226 (251)
T COG4700 168 RTLA-AQGKYADAESAFEVAISYYPGP-QARIYYAEMLAKQGRLREANAQYVAVVDTAKRS 226 (251)
T ss_pred HHHH-hcCCchhHHHHHHHHHHhCCCH-HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhc
Confidence 9998 9999999999999999988854 44556888998988544332 567888888754
No 177
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=97.81 E-value=0.00039 Score=67.15 Aligned_cols=108 Identities=18% Similarity=0.361 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHh----CCHHHHHHHHHHHHHhcCC---------CHHHHHHHHHHHHh
Q 001481 56 EMIGLVYDSFLAEFP---LCYGYWRKYADHKARL----CSIDKVVEVFERAVQSATY---------SVDVWFHYCSLSMS 119 (1071)
Q Consensus 56 ~~a~~vyeraL~~~P---~s~~lW~~~a~~e~~~----~~~e~A~~lferAL~~~P~---------s~~lW~~y~~~~~~ 119 (1071)
++.+..||..+.... +-...|..|++|.... +.......+++||+..+.. .+++|+.|+++.
T Consensus 2 ~~~r~~~e~~i~~~~~~dDPL~~w~~yI~w~~~~~p~~~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~-- 79 (126)
T PF08311_consen 2 EQQRQEFEEQIRSYEEGDDPLDPWLRYIKWIEENYPSGGKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLS-- 79 (126)
T ss_dssp HHHHHHHHHHHHCCGGSS-CHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTB--
T ss_pred HHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHc--
Confidence 455677788777766 4568899999887765 3456778888888887644 357999999762
Q ss_pred hCCChhHHHHHHHHHHH-hcCCCCCchHHHHHHHHHHHHccCHHHHHHHHHHHh
Q 001481 120 TFEDPNDVRRLFKRALS-FVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTL 172 (1071)
Q Consensus 120 ~~~~~e~ar~l~erAL~-~~~~~~~s~~lW~~yi~fe~~~~~~~~a~~iy~ral 172 (1071)
..++.+|..... .+|.. ...+|..|+.+.+..+++.+|.+||.++|
T Consensus 80 -----~~~~~if~~l~~~~IG~~--~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 80 -----SDPREIFKFLYSKGIGTK--LALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp -----SHHHHHHHHHHHHTTSTT--BHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred -----cCHHHHHHHHHHcCccHH--HHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 378899988776 35654 67999999999999999999999999875
No 178
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.81 E-value=6.3e-05 Score=67.24 Aligned_cols=81 Identities=15% Similarity=0.099 Sum_probs=42.3
Q ss_pred hCCHHHHHHHHHHHhhccChh--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhhcC
Q 001481 371 IGDTSAARAAFPESYIDSDSR--FIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTG 448 (1071)
Q Consensus 371 ~g~~~~A~~~~~~al~~~~p~--~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~g 448 (1071)
.|+++.|+.+|++++ ...|. ...+|+.++.++.+.|++++|..++++ ++. .+....+...+|.++. ..|
T Consensus 2 ~~~y~~Ai~~~~k~~-~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~------~~~~~~~~~l~a~~~~-~l~ 72 (84)
T PF12895_consen 2 QGNYENAIKYYEKLL-ELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKL------DPSNPDIHYLLARCLL-KLG 72 (84)
T ss_dssp TT-HHHHHHHHHHHH-HHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH------HHCHHHHHHHHHHHHH-HTT
T ss_pred CccHHHHHHHHHHHH-HHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC------CCCCHHHHHHHHHHHH-HhC
Confidence 355556666666665 22331 334455556666666666666666655 333 2333444445566655 666
Q ss_pred CHHHHHHHHHHH
Q 001481 449 SADNARDILIDG 460 (1071)
Q Consensus 449 ~~e~Ar~i~e~a 460 (1071)
++++|+++|+++
T Consensus 73 ~y~eAi~~l~~~ 84 (84)
T PF12895_consen 73 KYEEAIKALEKA 84 (84)
T ss_dssp -HHHHHHHHHHH
T ss_pred CHHHHHHHHhcC
Confidence 666666666553
No 179
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.78 E-value=0.00048 Score=65.71 Aligned_cols=98 Identities=20% Similarity=0.230 Sum_probs=79.5
Q ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHhhcc--ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCC---c
Q 001481 358 PVIHLFNARYKEQIGDTSAARAAFPESYIDS--DSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHT---L 432 (1071)
Q Consensus 358 p~i~~~~a~~e~~~g~~~~A~~~~~~al~~~--~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~---~ 432 (1071)
|.+++..|..+...|+.++|..+|++++..- .+.-.++++.++..++..|++++|..++++++.. +|. .
T Consensus 1 ~~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~------~p~~~~~ 74 (120)
T PF12688_consen 1 PRALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE------FPDDELN 74 (120)
T ss_pred CchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH------CCCcccc
Confidence 3467777888888999999999999998422 2344678999999999999999999999999887 454 6
Q ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Q 001481 433 PLLYVQFSRLTYTTTGSADNARDILIDGIK 462 (1071)
Q Consensus 433 ~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~ 462 (1071)
..+...+|.++. ..|+.++|...+-.++.
T Consensus 75 ~~l~~f~Al~L~-~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 75 AALRVFLALALY-NLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHHHHHH-HCCCHHHHHHHHHHHHH
Confidence 777788888887 89999999998888774
No 180
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=0.00028 Score=78.83 Aligned_cols=129 Identities=16% Similarity=0.058 Sum_probs=103.3
Q ss_pred HHHHHHhCCHHHHHHHHHHHhhccC------h--------hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCC
Q 001481 365 ARYKEQIGDTSAARAAFPESYIDSD------S--------RFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFH 430 (1071)
Q Consensus 365 a~~e~~~g~~~~A~~~~~~al~~~~------p--------~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p 430 (1071)
+.++.+.|+|..|..-|++|+..+. + -...++++++.++.+++.+.+|+..+.++|.. .+
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~------~~ 288 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL------DP 288 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc------CC
Confidence 4556678888888888888874321 1 11344778888889999999999999999999 89
Q ss_pred CcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCCCchhhHHHHHHHhhccCC
Q 001481 431 TLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLLLEELIKFTMVHGGRSHISIVDAVISNALYSRP 502 (1071)
Q Consensus 431 ~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~~~P~~~~lw~~~~~~e~~~g~~~~a~~~r~l~e~Al~~~~ 502 (1071)
.+.++.+..|.++. ..|+++.||..|.++++..|.|.++-..++.+-.+.......+ +++|.+.+...+
T Consensus 289 ~N~KALyRrG~A~l-~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~ke--kk~y~~mF~k~~ 357 (397)
T KOG0543|consen 289 NNVKALYRRGQALL-ALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKE--KKMYANMFAKLA 357 (397)
T ss_pred CchhHHHHHHHHHH-hhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhhccc
Confidence 99999999999998 9999999999999999999999998888888876654443322 577777776544
No 181
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.75 E-value=0.00061 Score=74.58 Aligned_cols=99 Identities=10% Similarity=0.068 Sum_probs=74.3
Q ss_pred CHHHHHHHHHHH-HhhCCHHHHHHHHHHHHHHhhccc---hHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCh---hhHH
Q 001481 322 YPEFWMRYVDFM-ESKGGREIASYALDRATQIFLKRL---PVIHLFNARYKEQIGDTSAARAAFPESYIDSDS---RFIE 394 (1071)
Q Consensus 322 ~~~lW~~ya~~l-~~~g~~e~A~~il~rAl~~~~~~~---p~i~~~~a~~e~~~g~~~~A~~~~~~al~~~~p---~~~~ 394 (1071)
.+..|+..+..+ ...|++++|+..|++.+.. .|+. |.+++++|.++...|++++|+..|.+++ ...| ...+
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~-yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv-~~yP~s~~~~d 218 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKK-YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVV-KNYPKSPKAAD 218 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHCCCCcchhH
Confidence 456677776655 4457888888888888876 3443 4677888888888888888888888887 3334 3567
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001481 395 KVTFKANMERRLGNFVAACDTYKEALET 422 (1071)
Q Consensus 395 ~w~~~a~le~~~g~~~~A~~~y~~Al~~ 422 (1071)
+|++.+.++...|+.++|+.+|+++++.
T Consensus 219 Al~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 219 AMFKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7888888888888888888888888887
No 182
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.73 E-value=0.0019 Score=70.05 Aligned_cols=168 Identities=16% Similarity=0.155 Sum_probs=118.9
Q ss_pred CChhHHHHHHHHHHHHHHhCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhccchHHHHH
Q 001481 284 LDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLF 363 (1071)
Q Consensus 284 ~~p~~~~~W~~y~~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~ 363 (1071)
.+.+.+.+|+.+..|. .|++++|...|+-+....--..++|..+|..+--.|.+.+|..+.++|-+ .|-.-..
T Consensus 54 EEE~~~~lWia~C~fh--LgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k-----~pL~~RL 126 (557)
T KOG3785|consen 54 EEEDSLQLWIAHCYFH--LGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPK-----TPLCIRL 126 (557)
T ss_pred hhhHHHHHHHHHHHHh--hccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCC-----ChHHHHH
Confidence 3456789999887774 79999999999999987666789999999988888999999888877654 3421111
Q ss_pred HHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHH
Q 001481 364 NARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLT 443 (1071)
Q Consensus 364 ~a~~e~~~g~~~~A~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~ 443 (1071)
.-.+-.+.++-++ ...|...+. +..+--+.++.+......+.+|+++|++.+.. .+..-.+-+.+|.++
T Consensus 127 lfhlahklndEk~-~~~fh~~Lq----D~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d------n~ey~alNVy~ALCy 195 (557)
T KOG3785|consen 127 LFHLAHKLNDEKR-ILTFHSSLQ----DTLEDQLSLASVHYMRMHYQEAIDVYKRVLQD------NPEYIALNVYMALCY 195 (557)
T ss_pred HHHHHHHhCcHHH-HHHHHHHHh----hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc------ChhhhhhHHHHHHHH
Confidence 1122234444333 333343332 22233445555555555789999999999876 555555667778888
Q ss_pred HhhcCCHHHHHHHHHHHHhhCCChHHH
Q 001481 444 YTTTGSADNARDILIDGIKHVPNCKLL 470 (1071)
Q Consensus 444 ~~~~g~~e~Ar~i~e~al~~~P~~~~l 470 (1071)
+ ..+.++.+-+++.--|+.+|++.-.
T Consensus 196 y-KlDYydvsqevl~vYL~q~pdStiA 221 (557)
T KOG3785|consen 196 Y-KLDYYDVSQEVLKVYLRQFPDSTIA 221 (557)
T ss_pred H-hcchhhhHHHHHHHHHHhCCCcHHH
Confidence 7 9999999999999999999998753
No 183
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.72 E-value=0.0008 Score=64.19 Aligned_cols=95 Identities=17% Similarity=0.144 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHhhcCC---CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhcc---chHHHHHH
Q 001481 291 NWHDYLSFAEKQGDFDWVVKLYERCLIPC---ADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKR---LPVIHLFN 364 (1071)
Q Consensus 291 ~W~~y~~~~~~~g~~~~a~~~yerAL~~~---p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~---~p~i~~~~ 364 (1071)
+++..+..+...|+.++|+.+|++++... +....+++.++..+...|++++|..++++++.. .|. ...+..++
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~-~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE-FPDDELNAALRVFL 81 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-CCCccccHHHHHHH
Confidence 56677777888999999999999999753 333678999999999999999999999999886 455 45678888
Q ss_pred HHHHHHhCCHHHHHHHHHHHhh
Q 001481 365 ARYKEQIGDTSAARAAFPESYI 386 (1071)
Q Consensus 365 a~~e~~~g~~~~A~~~~~~al~ 386 (1071)
+..+...|+.++|...+..++.
T Consensus 82 Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 8888999999999999888773
No 184
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.71 E-value=0.04 Score=64.91 Aligned_cols=43 Identities=14% Similarity=0.132 Sum_probs=29.6
Q ss_pred CcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 001481 53 DDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVF 96 (1071)
Q Consensus 53 ~~~~~a~~vyeraL~~~P~s~~lW~~~a~~e~~~~~~e~A~~lf 96 (1071)
+++++|.. |-.-++.-|..+.+|+.++++.++.++.--|..+|
T Consensus 458 ~df~ra~a-fles~~~~~da~amw~~laelale~~nl~iaercf 500 (1636)
T KOG3616|consen 458 GDFDRATA-FLESLEMGPDAEAMWIRLAELALEAGNLFIAERCF 500 (1636)
T ss_pred CchHHHHH-HHHhhccCccHHHHHHHHHHHHHHhccchHHHHHH
Confidence 67777754 44456678888899999999888776654333333
No 185
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=97.71 E-value=0.00063 Score=65.69 Aligned_cols=117 Identities=20% Similarity=0.313 Sum_probs=78.2
Q ss_pred HHHHHHHHhhcCCC---CCHHHHHHHHHHHHhh----CCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhCCHHHHHH
Q 001481 307 WVVKLYERCLIPCA---DYPEFWMRYVDFMESK----GGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARA 379 (1071)
Q Consensus 307 ~a~~~yerAL~~~p---~~~~lW~~ya~~l~~~----g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~~A~~ 379 (1071)
..+..|+..|.... +..++|+.|+++.+.. |.......+++|+++.+.. ++
T Consensus 3 ~~r~~~e~~i~~~~~~dDPL~~w~~yI~w~~~~~p~~~~~~~L~~lLer~~~~f~~-~~--------------------- 60 (126)
T PF08311_consen 3 QQRQEFEEQIRSYEEGDDPLDPWLRYIKWIEENYPSGGKQSGLLELLERCIRKFKD-DE--------------------- 60 (126)
T ss_dssp HHHHHHHHHHHCCGGSS-CHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHTT-SG---------------------
T ss_pred HHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHHhh-hH---------------------
Confidence 45566777775433 5578899999888765 3345566777777765321 11
Q ss_pred HHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 001481 380 AFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILID 459 (1071)
Q Consensus 380 ~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~ 459 (1071)
+ . .-++.++++|+.|+++.. .++.+|.-.... ......+.+|+.||.+++ ..|++++|.+||.+
T Consensus 61 ---~-Y-~nD~RylkiWi~ya~~~~------~~~~if~~l~~~----~IG~~~A~fY~~wA~~le-~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 61 ---R-Y-KNDERYLKIWIKYADLSS------DPREIFKFLYSK----GIGTKLALFYEEWAEFLE-KRGNFKKADEIYQL 124 (126)
T ss_dssp ---G-G-TT-HHHHHHHHHHHTTBS------HHHHHHHHHHHH----TTSTTBHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred ---h-h-cCCHHHHHHHHHHHHHcc------CHHHHHHHHHHc----CccHHHHHHHHHHHHHHH-HcCCHHHHHHHHHh
Confidence 0 0 225667788888886542 777788766554 235667888888888888 88889999998888
Q ss_pred HH
Q 001481 460 GI 461 (1071)
Q Consensus 460 al 461 (1071)
||
T Consensus 125 Gi 126 (126)
T PF08311_consen 125 GI 126 (126)
T ss_dssp HH
T ss_pred hC
Confidence 86
No 186
>PRK15331 chaperone protein SicA; Provisional
Probab=97.70 E-value=0.00094 Score=66.30 Aligned_cols=98 Identities=15% Similarity=-0.043 Sum_probs=82.4
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHH
Q 001481 363 FNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRL 442 (1071)
Q Consensus 363 ~~a~~e~~~g~~~~A~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~ 442 (1071)
.+|.-....|++++|..+|.-.. ..++.+.+.|+.++.+....|++++|+.+|..|..+ ...++...+..|.+
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~-~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l------~~~dp~p~f~agqC 114 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLC-IYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL------LKNDYRPVFFTGQC 114 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH-HhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------ccCCCCccchHHHH
Confidence 33444567899999999999887 678888899999999999999999999999999988 56777778888999
Q ss_pred HHhhcCCHHHHHHHHHHHHhhCCChHH
Q 001481 443 TYTTTGSADNARDILIDGIKHVPNCKL 469 (1071)
Q Consensus 443 ~~~~~g~~e~Ar~i~e~al~~~P~~~~ 469 (1071)
+. ..|+.+.|+.+|+.++.. |....
T Consensus 115 ~l-~l~~~~~A~~~f~~a~~~-~~~~~ 139 (165)
T PRK15331 115 QL-LMRKAAKARQCFELVNER-TEDES 139 (165)
T ss_pred HH-HhCCHHHHHHHHHHHHhC-cchHH
Confidence 88 999999999999999974 44433
No 187
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.68 E-value=0.0018 Score=68.39 Aligned_cols=171 Identities=17% Similarity=0.087 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHhhcCCCCC---HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhccch---HHHH
Q 001481 289 LKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADY---PEFWMRYVDFMESKGGREIASYALDRATQIFLKRLP---VIHL 362 (1071)
Q Consensus 289 ~~~W~~y~~~~~~~g~~~~a~~~yerAL~~~p~~---~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p---~i~~ 362 (1071)
.+.+...+......|++.+|+..|++.+...|.. .++++.+|..+...|+++.|+..|++-+.. .|..+ .+++
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~-yP~~~~~~~A~Y 83 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL-YPNSPKADYALY 83 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--TT-TTHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-CCCCcchhhHHH
Confidence 3556666666777888888888888888765543 577778888888888888888888888876 44443 3444
Q ss_pred HHHHHHHHh-----------CCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCC
Q 001481 363 FNARYKEQI-----------GDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHT 431 (1071)
Q Consensus 363 ~~a~~e~~~-----------g~~~~A~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~ 431 (1071)
..|...... +...+|...|...+ ...|++. -..+|......+.+.+
T Consensus 84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li-~~yP~S~--------------y~~~A~~~l~~l~~~l-------- 140 (203)
T PF13525_consen 84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELI-KRYPNSE--------------YAEEAKKRLAELRNRL-------- 140 (203)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHH-HH-TTST--------------THHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHhCccchhcccChHHHHHHHHHHHHHH-HHCcCch--------------HHHHHHHHHHHHHHHH--------
Confidence 433322111 11123333333333 2233322 1223333222222221
Q ss_pred cHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCChHH---HHHHHHHHHHHcCCCC
Q 001481 432 LPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKL---LLEELIKFTMVHGGRS 485 (1071)
Q Consensus 432 ~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~~~P~~~~---lw~~~~~~e~~~g~~~ 485 (1071)
..--+..|.++. ..|.+..|..-|+..++.+|++.. .+..+++....+|...
T Consensus 141 -a~~e~~ia~~Y~-~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 141 -AEHELYIARFYY-KRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp -HHHHHHHHHHHH-CTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred -HHHHHHHHHHHH-HcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChH
Confidence 122345688887 899999999999999999999764 4555555555666554
No 188
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.67 E-value=0.004 Score=67.58 Aligned_cols=179 Identities=10% Similarity=0.001 Sum_probs=112.9
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHhhcCCCCCHHH---HHHHHHHHHhhCCHHHHHHHHHHHHHHhhccch---HHHH
Q 001481 289 LKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEF---WMRYVDFMESKGGREIASYALDRATQIFLKRLP---VIHL 362 (1071)
Q Consensus 289 ~~~W~~y~~~~~~~g~~~~a~~~yerAL~~~p~~~~l---W~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p---~i~~ 362 (1071)
...+...+.-....|+++.|+..|++++...|....+ .+.+|..+.+.+++++|+..|++.++. .|+.| .+++
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~-~P~~~~~~~a~Y 110 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL-NPTHPNIDYVLY 110 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-CcCCCchHHHHH
Confidence 3445555666667899999999999999988877543 367777788899999999999999997 55555 4455
Q ss_pred HHHHHHHHhC---------------C---HHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q 001481 363 FNARYKEQIG---------------D---TSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAA 424 (1071)
Q Consensus 363 ~~a~~e~~~g---------------~---~~~A~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~ 424 (1071)
..|......+ + ..+|...|++.+ ...|++.- ..+|..-...+...
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li-~~yP~S~y--------------a~~A~~rl~~l~~~-- 173 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLV-RGYPNSQY--------------TTDATKRLVFLKDR-- 173 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHH-HHCcCChh--------------HHHHHHHHHHHHHH--
Confidence 5444322221 1 123445555555 33444321 11222211111111
Q ss_pred hhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCChHH---HHHHHHHHHHHcCCCCchhhHHHH
Q 001481 425 EQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKL---LLEELIKFTMVHGGRSHISIVDAV 493 (1071)
Q Consensus 425 ~~~~~p~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~~~P~~~~---lw~~~~~~e~~~g~~~~a~~~r~l 493 (1071)
...--+..|+++. +.|.+..|..-|+..++.+|++.. .....++-....|..+.+..+..+
T Consensus 174 -------la~~e~~ia~~Y~-~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 174 -------LAKYELSVAEYYT-KRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred -------HHHHHHHHHHHHH-HcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 1222345678887 899999999999999999998653 444455556667777766433333
No 189
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.62 E-value=0.18 Score=56.12 Aligned_cols=150 Identities=18% Similarity=0.088 Sum_probs=113.8
Q ss_pred CCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhCCHHHHHHHHH
Q 001481 303 GDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFP 382 (1071)
Q Consensus 303 g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~~A~~~~~ 382 (1071)
.+...++..-..++++.|+..-.-..-++.|.+.|+..++-.+++.+-+. . -.|.||..|... +.|+.-..|--=-
T Consensus 243 adp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~-e-PHP~ia~lY~~a--r~gdta~dRlkRa 318 (531)
T COG3898 243 ADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA-E-PHPDIALLYVRA--RSGDTALDRLKRA 318 (531)
T ss_pred CChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc-C-CChHHHHHHHHh--cCCCcHHHHHHHH
Confidence 45677888888888888988888888888899999999999999999875 1 246787776543 4554322222111
Q ss_pred HHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Q 001481 383 ESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIK 462 (1071)
Q Consensus 383 ~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~ 462 (1071)
+.++.+.|++.+..+..+..-..-|++..|+.--+.++.. . -...+|+-+|.+++-..||-.++|..+-++++
T Consensus 319 ~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~------~-pres~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 319 KKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE------A-PRESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh------C-chhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 2244667888888888887777789999999998888776 2 34578889999988677999999999999996
Q ss_pred h
Q 001481 463 H 463 (1071)
Q Consensus 463 ~ 463 (1071)
.
T Consensus 392 A 392 (531)
T COG3898 392 A 392 (531)
T ss_pred C
Confidence 4
No 190
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.59 E-value=0.34 Score=59.72 Aligned_cols=270 Identities=15% Similarity=0.099 Sum_probs=146.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCcCCCCCC--------hhHHHHHHHHHHHHHHhCCHHHHHHHHHHhhcCCCCCHH
Q 001481 253 GEQIYKEASQLDEKINCFENLIRRPYFHVKPLD--------DIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPE 324 (1071)
Q Consensus 253 ~~~~y~~a~~~~~~~~~fE~ai~~~~~~~~~~~--------p~~~~~W~~y~~~~~~~g~~~~a~~~yerAL~~~p~~~~ 324 (1071)
...+|++|...+++......+++....++..++ -+...+|..++..-...|...+|++-|=|| +++.
T Consensus 1060 ~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps 1134 (1666)
T KOG0985|consen 1060 ENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPS 1134 (1666)
T ss_pred hhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcH
Confidence 445666666665555555554432222222111 134579999999888888899999999776 5667
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHhh-cc-chHHHHHHHHHH------HH-hC-CHHHH----HHHHHHHhh---c
Q 001481 325 FWMRYVDFMESKGGREIASYALDRATQIFL-KR-LPVIHLFNARYK------EQ-IG-DTSAA----RAAFPESYI---D 387 (1071)
Q Consensus 325 lW~~ya~~l~~~g~~e~A~~il~rAl~~~~-~~-~p~i~~~~a~~e------~~-~g-~~~~A----~~~~~~al~---~ 387 (1071)
-|...+....+.|++++....+.-|.+... +. ...+.++||+.. +. .| +.... -++|+...- .
T Consensus 1135 ~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAk 1214 (1666)
T KOG0985|consen 1135 NYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAK 1214 (1666)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHH
Confidence 888888888899999988888877765311 11 124555655431 11 11 00001 112221110 0
Q ss_pred cChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhh----------ccC----------CCcHHHHHHHHHHHHhhc
Q 001481 388 SDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQ----------RKF----------HTLPLLYVQFSRLTYTTT 447 (1071)
Q Consensus 388 ~~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~----------~~~----------p~~~~l~~~~A~~~~~~~ 447 (1071)
+.-.++..|-+++..+..+|.+..|.+.-++|-.. +-+ ..+ .-.++-.-.+...|. ..
T Consensus 1215 l~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~-ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq-~r 1292 (1666)
T KOG0985|consen 1215 LLYSNVSNFAKLASTLVYLGEYQGAVDAARKANST-KTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQ-DR 1292 (1666)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccch-hHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHH-hc
Confidence 11133445667777677777777777666655322 000 000 001111222333344 78
Q ss_pred CCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCCCchhhHHHHHHHhhccCCcccccCChhhHHHHHHHHHHHHHHh
Q 001481 448 GSADNARDILIDGIKHVPNCKLLLEELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQQFLDL 527 (1071)
Q Consensus 448 g~~e~Ar~i~e~al~~~P~~~~lw~~~~~~e~~~g~~~~a~~~r~l~e~Al~~~~d~~~~l~~~~~~~lw~~~l~~~e~~ 527 (1071)
|.+++-+.++|.||-+..-...++..++-++.+..- ++.+.-.++|=.-+.. | ..+...+..++|...+ =+...
T Consensus 1293 GyFeElIsl~Ea~LGLERAHMgmfTELaiLYskykp-~km~EHl~LFwsRvNi-p---KviRA~eqahlW~Elv-fLY~~ 1366 (1666)
T KOG0985|consen 1293 GYFEELISLLEAGLGLERAHMGMFTELAILYSKYKP-EKMMEHLKLFWSRVNI-P---KVIRAAEQAHLWSELV-FLYDK 1366 (1666)
T ss_pred CcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHhcch-H---HHHHHHHHHHHHHHHH-HHHHh
Confidence 999999999999998877666666666666655432 2221111222221110 1 1223345678998887 55555
Q ss_pred cCCHHHHH
Q 001481 528 CGTIHDIR 535 (1071)
Q Consensus 528 ~G~~e~a~ 535 (1071)
+..++.|.
T Consensus 1367 y~eyDNAa 1374 (1666)
T KOG0985|consen 1367 YEEYDNAA 1374 (1666)
T ss_pred hhhhhHHH
Confidence 65555543
No 191
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.57 E-value=0.024 Score=60.15 Aligned_cols=183 Identities=14% Similarity=0.082 Sum_probs=136.3
Q ss_pred hHHHHHHHHHHHHHHhCCHH-HHHHHHHHhhcCCCCCHHHHHHH-HHHHHhhCCHHHHHHHHHHHHHHhhccchHHHHHH
Q 001481 287 IQLKNWHDYLSFAEKQGDFD-WVVKLYERCLIPCADYPEFWMRY-VDFMESKGGREIASYALDRATQIFLKRLPVIHLFN 364 (1071)
Q Consensus 287 ~~~~~W~~y~~~~~~~g~~~-~a~~~yerAL~~~p~~~~lW~~y-a~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~ 364 (1071)
......+.++.++..-+..+ ..-.+++..+........+|... +.++...|++++|...+.+...+ ++...-
T Consensus 70 ~~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~l------E~~Al~ 143 (299)
T KOG3081|consen 70 TPLQAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENL------EAAALN 143 (299)
T ss_pred ChHHHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchH------HHHHHH
Confidence 34566777777776555544 45567777666666666555554 56778889999999999885443 444455
Q ss_pred HHHHHHhCCHHHHHHHHHHHhhccChh-----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHH
Q 001481 365 ARYKEQIGDTSAARAAFPESYIDSDSR-----FIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQF 439 (1071)
Q Consensus 365 a~~e~~~g~~~~A~~~~~~al~~~~p~-----~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~ 439 (1071)
..+..+..++|-|+..++++. .++-+ .+.+|++++. -.+.+..|.=+|++.-+. .+-++.+....
T Consensus 144 VqI~lk~~r~d~A~~~lk~mq-~ided~tLtQLA~awv~la~---ggek~qdAfyifeE~s~k------~~~T~~llnG~ 213 (299)
T KOG3081|consen 144 VQILLKMHRFDLAEKELKKMQ-QIDEDATLTQLAQAWVKLAT---GGEKIQDAFYIFEELSEK------TPPTPLLLNGQ 213 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-ccchHHHHHHHHHHHHHHhc---cchhhhhHHHHHHHHhcc------cCCChHHHccH
Confidence 566778889999999999987 44432 3455666553 334578899999998776 56778888888
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCCCc
Q 001481 440 SRLTYTTTGSADNARDILIDGIKHVPNCKLLLEELIKFTMVHGGRSH 486 (1071)
Q Consensus 440 A~~~~~~~g~~e~Ar~i~e~al~~~P~~~~lw~~~~~~e~~~g~~~~ 486 (1071)
|.+.. ..|++++|-.+++.+|.+.+++++...+.+-.-...|....
T Consensus 214 Av~~l-~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~ 259 (299)
T KOG3081|consen 214 AVCHL-QLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAE 259 (299)
T ss_pred HHHHH-HhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChH
Confidence 88877 89999999999999999999999999999998888887643
No 192
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.56 E-value=0.00038 Score=60.15 Aligned_cols=65 Identities=18% Similarity=0.188 Sum_probs=52.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCChHHHHH
Q 001481 401 NMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLLLE 472 (1071)
Q Consensus 401 ~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~~~P~~~~lw~ 472 (1071)
.++.+.+++++|++++++++.. +|.++.+|..+|.++. ..|++++|+..|+++++..|++...-.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~------~p~~~~~~~~~a~~~~-~~g~~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALEL------DPDDPELWLQRARCLF-QLGRYEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHh------CcccchhhHHHHHHHH-HhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 3456778888888888888888 7788888888888887 888888888888888888887765433
No 193
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.51 E-value=0.00049 Score=59.41 Aligned_cols=60 Identities=22% Similarity=0.138 Sum_probs=52.1
Q ss_pred CcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcCCCHHHHHH
Q 001481 53 DDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFH 112 (1071)
Q Consensus 53 ~~~~~a~~vyeraL~~~P~s~~lW~~~a~~e~~~~~~e~A~~lferAL~~~P~s~~lW~~ 112 (1071)
++++++..++++++..+|.++.+|..++.++...|++++|...|+++++..|.+.+.-..
T Consensus 9 ~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~ 68 (73)
T PF13371_consen 9 EDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL 68 (73)
T ss_pred CCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 788899999999999999999999999999999999999999999999998887765443
No 194
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.51 E-value=0.027 Score=61.74 Aligned_cols=173 Identities=13% Similarity=0.017 Sum_probs=118.4
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHhhcCC---C--CCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhc-cch----HH
Q 001481 291 NWHDYLSFAEKQGDFDWVVKLYERCLIPC---A--DYPEFWMRYVDFMESKGGREIASYALDRATQIFLK-RLP----VI 360 (1071)
Q Consensus 291 ~W~~y~~~~~~~g~~~~a~~~yerAL~~~---p--~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~-~~p----~i 360 (1071)
.+.+++.-.++..++.+++.+-.-++..- + ........++..+...+.++.+.+.|++|+++... .++ .+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 33334433344445555666555555432 2 11234444566666667789999999999986432 223 36
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhhccCh---h------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCC
Q 001481 361 HLFNARYKEQIGDTSAARAAFPESYIDSDS---R------FIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHT 431 (1071)
Q Consensus 361 ~~~~a~~e~~~g~~~~A~~~~~~al~~~~p---~------~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~ 431 (1071)
...++.+..+..++++|.-...+|.+-+.. + ...+.+..+..++..|.+-.|.++.++|.++.-..-+.+.
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~ 244 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL 244 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence 778888999999999999888888631111 1 1223455566788899999999999999988644333455
Q ss_pred cHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhC
Q 001481 432 LPLLYVQFSRLTYTTTGSADNARDILIDGIKHV 464 (1071)
Q Consensus 432 ~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~~~ 464 (1071)
......-+|.++. ..||.+.|+.-||.|....
T Consensus 245 ~arc~~~~aDIyR-~~gd~e~af~rYe~Am~~m 276 (518)
T KOG1941|consen 245 QARCLLCFADIYR-SRGDLERAFRRYEQAMGTM 276 (518)
T ss_pred HHHHHHHHHHHHH-hcccHhHHHHHHHHHHHHH
Confidence 6677888999987 9999999999999998653
No 195
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.50 E-value=0.002 Score=71.16 Aligned_cols=139 Identities=15% Similarity=0.051 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHhhCC-------------HHHHHHHHHHHHHHhhccchH------------HHHHHHHHHHHhCCHHHHH
Q 001481 324 EFWMRYVDFMESKGG-------------REIASYALDRATQIFLKRLPV------------IHLFNARYKEQIGDTSAAR 378 (1071)
Q Consensus 324 ~lW~~ya~~l~~~g~-------------~e~A~~il~rAl~~~~~~~p~------------i~~~~a~~e~~~g~~~~A~ 378 (1071)
.++|+++.+|...|+ .+++...|++|++.|..+... .+-.++..+..+|+|+.|+
T Consensus 136 RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai 215 (639)
T KOG1130|consen 136 RALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAI 215 (639)
T ss_pred HHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHH
Confidence 455666666666554 267788888888764332210 1111223345578888887
Q ss_pred HHHHHHhhccCh------hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhhcCCHHH
Q 001481 379 AAFPESYIDSDS------RFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADN 452 (1071)
Q Consensus 379 ~~~~~al~~~~p------~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~g~~e~ 452 (1071)
..-+.-+ ++.. .--+++..+++...-+|+++.|++.|++++.+...-......+...+.+|..|. ...++.+
T Consensus 216 ~~H~~RL-~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtyt-ll~e~~k 293 (639)
T KOG1130|consen 216 HFHKLRL-EIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYT-LLKEVQK 293 (639)
T ss_pred HHHHHHH-HHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHH-HHHHHHH
Confidence 7665544 2221 123567778888888999999999999998875432222223455677788877 8889999
Q ss_pred HHHHHHHHHhhC
Q 001481 453 ARDILIDGIKHV 464 (1071)
Q Consensus 453 Ar~i~e~al~~~ 464 (1071)
|+.++.+-|++.
T Consensus 294 AI~Yh~rHLaIA 305 (639)
T KOG1130|consen 294 AITYHQRHLAIA 305 (639)
T ss_pred HHHHHHHHHHHH
Confidence 999998877653
No 196
>PRK15331 chaperone protein SicA; Provisional
Probab=97.46 E-value=0.0025 Score=63.39 Aligned_cols=102 Identities=15% Similarity=0.032 Sum_probs=90.6
Q ss_pred CChhHHHHHHHHHHHHHHhCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhccchHHHHH
Q 001481 284 LDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLF 363 (1071)
Q Consensus 284 ~~p~~~~~W~~y~~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~ 363 (1071)
+.++.++....++--+-..|+++.|..+|.-....++.+.+.|+.+|.++...+.++.|+..|..|..+ .+++|...+.
T Consensus 32 is~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l-~~~dp~p~f~ 110 (165)
T PRK15331 32 IPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL-LKNDYRPVFF 110 (165)
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-ccCCCCccch
Confidence 456667777777777778999999999999999999999999999999999999999999999999876 6788888888
Q ss_pred HHHHHHHhCCHHHHHHHHHHHhh
Q 001481 364 NARYKEQIGDTSAARAAFPESYI 386 (1071)
Q Consensus 364 ~a~~e~~~g~~~~A~~~~~~al~ 386 (1071)
.+.++...|+.+.|+..|..+++
T Consensus 111 agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 111 TGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHh
Confidence 89999999999999999999984
No 197
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.46 E-value=0.24 Score=53.30 Aligned_cols=66 Identities=12% Similarity=-0.097 Sum_probs=44.4
Q ss_pred CcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 001481 53 DDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSM 118 (1071)
Q Consensus 53 ~~~~~a~~vyeraL~~~P~s~~lW~~~a~~e~~~~~~e~A~~lferAL~~~P~s~~lW~~y~~~~~ 118 (1071)
..++.++.++....+..|.+-...-.++--+....+|+.|-.+|+.....+|.....-+-|+.-+.
T Consensus 24 ~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 24 ARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLY 89 (459)
T ss_pred hhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHH
Confidence 357777788888888888766555555555555567888888888888887765554444444333
No 198
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.42 E-value=0.0014 Score=73.11 Aligned_cols=158 Identities=20% Similarity=0.126 Sum_probs=115.0
Q ss_pred HHHHhCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHH--hCCHH
Q 001481 298 FAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQ--IGDTS 375 (1071)
Q Consensus 298 ~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~--~g~~~ 375 (1071)
.+...|+++.|..++.++ ...++-...+.++...++++.|.+.++++.+. ..+..-+-++-+++-.. .+++.
T Consensus 111 i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~-~eD~~l~qLa~awv~l~~g~e~~~ 184 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQI-DEDSILTQLAEAWVNLATGGEKYQ 184 (290)
T ss_dssp HHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-SCCHHHHHHHHHHHHHHHTTTCCC
T ss_pred HHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHhCchhHH
Confidence 344567777777777654 45677777888899999999999999887654 22222222333333333 44689
Q ss_pred HHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhhcCCH-HHHH
Q 001481 376 AARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSA-DNAR 454 (1071)
Q Consensus 376 ~A~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~g~~-e~Ar 454 (1071)
+|..+|+... ...+.++.++...+.+....|++++|.+++++|+.. ++.++.+.++++.+.. ..|+. +.+.
T Consensus 185 ~A~y~f~El~-~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~------~~~~~d~LaNliv~~~-~~gk~~~~~~ 256 (290)
T PF04733_consen 185 DAFYIFEELS-DKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK------DPNDPDTLANLIVCSL-HLGKPTEAAE 256 (290)
T ss_dssp HHHHHHHHHH-CCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-------CCHHHHHHHHHHHHH-HTT-TCHHHH
T ss_pred HHHHHHHHHH-hccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh------ccCCHHHHHHHHHHHH-HhCCChhHHH
Confidence 9999999976 555677888999999999999999999999999876 7889999999988877 66766 7788
Q ss_pred HHHHHHHhhCCChHH
Q 001481 455 DILIDGIKHVPNCKL 469 (1071)
Q Consensus 455 ~i~e~al~~~P~~~~ 469 (1071)
+.+.+....+|..+.
T Consensus 257 ~~l~qL~~~~p~h~~ 271 (290)
T PF04733_consen 257 RYLSQLKQSNPNHPL 271 (290)
T ss_dssp HHHHHCHHHTTTSHH
T ss_pred HHHHHHHHhCCCChH
Confidence 888888878887654
No 199
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.42 E-value=0.15 Score=58.51 Aligned_cols=121 Identities=16% Similarity=0.262 Sum_probs=96.4
Q ss_pred ChhHHHHHHHHHHHHHHhCCHHHHHHHHHHhhcCC----CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHH-Hhhcc---
Q 001481 285 DDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPC----ADYPEFWMRYVDFMESKGGREIASYALDRATQ-IFLKR--- 356 (1071)
Q Consensus 285 ~p~~~~~W~~y~~~~~~~g~~~~a~~~yerAL~~~----p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~-~~~~~--- 356 (1071)
.......|..++....+.|.++.|..++.++.... ...+.+-+.++++++..|+.++|...++..+. .+.+.
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~ 221 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDS 221 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccc
Confidence 44566899999999999999999999999998753 22578899999999999999999999988887 21111
Q ss_pred -----------------------------chHHHHHHHHHHHHh------CCHHHHHHHHHHHhhccChhhHHHHHHHHH
Q 001481 357 -----------------------------LPVIHLFNARYKEQI------GDTSAARAAFPESYIDSDSRFIEKVTFKAN 401 (1071)
Q Consensus 357 -----------------------------~p~i~~~~a~~e~~~------g~~~~A~~~~~~al~~~~p~~~~~w~~~a~ 401 (1071)
...+++.+|++.... +..+++...|..++ .+.|...++|..|+.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~-~~~~~~~k~~~~~a~ 300 (352)
T PF02259_consen 222 ISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEAT-KLDPSWEKAWHSWAL 300 (352)
T ss_pred ccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHH-HhChhHHHHHHHHHH
Confidence 114566677777666 78889999999998 778888889999988
Q ss_pred HHHHc
Q 001481 402 MERRL 406 (1071)
Q Consensus 402 le~~~ 406 (1071)
+..+.
T Consensus 301 ~~~~~ 305 (352)
T PF02259_consen 301 FNDKL 305 (352)
T ss_pred HHHHH
Confidence 76553
No 200
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.41 E-value=0.017 Score=57.90 Aligned_cols=132 Identities=14% Similarity=0.124 Sum_probs=87.3
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCh--hhHHHHHHHHHHH
Q 001481 326 WMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDS--RFIEKVTFKANME 403 (1071)
Q Consensus 326 W~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~~A~~~~~~al~~~~p--~~~~~w~~~a~le 403 (1071)
.+.++..+.+.|++.+|+..|..++.-..-.++.+.+..+......+++.+|...+++.. +.+| ..++..+.++..+
T Consensus 92 r~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~-e~~pa~r~pd~~Ll~aR~l 170 (251)
T COG4700 92 RYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLM-EYNPAFRSPDGHLLFARTL 170 (251)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHh-hcCCccCCCCchHHHHHHH
Confidence 456667777777778888888777765444566666777777777777777777777776 4444 2344566667777
Q ss_pred HHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhhcCCHHHHH----HHHHHHHhhCCC
Q 001481 404 RRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNAR----DILIDGIKHVPN 466 (1071)
Q Consensus 404 ~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~g~~e~Ar----~i~e~al~~~P~ 466 (1071)
.-.|.+..|+..|+-++.. ...+...+.|+.++. ..|+.++|+ ++++.+.+..|+
T Consensus 171 aa~g~~a~Aesafe~a~~~-------ypg~~ar~~Y~e~La-~qgr~~ea~aq~~~v~d~~~r~~~H 229 (251)
T COG4700 171 AAQGKYADAESAFEVAISY-------YPGPQARIYYAEMLA-KQGRLREANAQYVAVVDTAKRSRPH 229 (251)
T ss_pred HhcCCchhHHHHHHHHHHh-------CCCHHHHHHHHHHHH-HhcchhHHHHHHHHHHHHHHhcchh
Confidence 7777777788888877776 234566666777776 667555544 445555544444
No 201
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.41 E-value=0.098 Score=58.19 Aligned_cols=220 Identities=16% Similarity=0.057 Sum_probs=127.1
Q ss_pred HhCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHh--hccch---HHHHHHHHH-HHHhCCH
Q 001481 301 KQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIF--LKRLP---VIHLFNARY-KEQIGDT 374 (1071)
Q Consensus 301 ~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~--~~~~p---~i~~~~a~~-e~~~g~~ 374 (1071)
..|+.+.++..-++|-..-|.-.-.|.....-....|+++.|+.+.+...... .+... ..-+.-++. .....+.
T Consensus 166 r~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp 245 (531)
T COG3898 166 RLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADP 245 (531)
T ss_pred hcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCCh
Confidence 46777777777777777777777777777666667777777777766554421 11111 111111221 2223345
Q ss_pred HHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhhcCCHHHHH
Q 001481 375 SAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNAR 454 (1071)
Q Consensus 375 ~~A~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~g~~e~Ar 454 (1071)
..|+..-..++ .+.|++...-..-+..+.+.|++-++-++++.+.+. .| .+.+|..|-. . +.||....|
T Consensus 246 ~~Ar~~A~~a~-KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~------eP-HP~ia~lY~~--a-r~gdta~dR 314 (531)
T COG3898 246 ASARDDALEAN-KLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA------EP-HPDIALLYVR--A-RSGDTALDR 314 (531)
T ss_pred HHHHHHHHHHh-hcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc------CC-ChHHHHHHHH--h-cCCCcHHHH
Confidence 56666666666 566677666666666677777777777777777765 21 2333333211 1 455543333
Q ss_pred HH-HHHHHhhCCChHHHHHHHHHHHHHcCCCCchhhHHHHHHHhhccCCcccccCChhhHHHHHHHHHHHHHHhc-CCHH
Q 001481 455 DI-LIDGIKHVPNCKLLLEELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQQFLDLC-GTIH 532 (1071)
Q Consensus 455 ~i-~e~al~~~P~~~~lw~~~~~~e~~~g~~~~a~~~r~l~e~Al~~~~d~~~~l~~~~~~~lw~~~l~~~e~~~-G~~e 532 (1071)
-- .++.....|++.+--...++-...-|++..+| .--+.+....| .+.++.... ++|+-- |+-.
T Consensus 315 lkRa~~L~slk~nnaes~~~va~aAlda~e~~~AR---a~Aeaa~r~~p----------res~~lLlA-dIeeAetGDqg 380 (531)
T COG3898 315 LKRAKKLESLKPNNAESSLAVAEAALDAGEFSAAR---AKAEAAAREAP----------RESAYLLLA-DIEEAETGDQG 380 (531)
T ss_pred HHHHHHHHhcCccchHHHHHHHHHHHhccchHHHH---HHHHHHhhhCc----------hhhHHHHHH-HHHhhccCchH
Confidence 22 22222345666665555555555556665543 44455443322 567788888 888755 9999
Q ss_pred HHHHHHHHHHHhC
Q 001481 533 DIRNAWNQHIKLF 545 (1071)
Q Consensus 533 ~a~~~~~ra~~~~ 545 (1071)
+++..+.++.+.=
T Consensus 381 ~vR~wlAqav~AP 393 (531)
T COG3898 381 KVRQWLAQAVKAP 393 (531)
T ss_pred HHHHHHHHHhcCC
Confidence 9999998888764
No 202
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.40 E-value=0.013 Score=61.98 Aligned_cols=175 Identities=16% Similarity=0.152 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCcCC---CCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHhhcCCCCCH---HHH
Q 001481 253 GEQIYKEASQLDEKINCFENLIRRPYFHV---KPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYP---EFW 326 (1071)
Q Consensus 253 ~~~~y~~a~~~~~~~~~fE~ai~~~~~~~---~~~~p~~~~~W~~y~~~~~~~g~~~~a~~~yerAL~~~p~~~---~lW 326 (1071)
.+.+|..+...+. .+.|+.+++. +..+ -+..+--.+++..++..+...|+++.|+..|++.+...|.+. .++
T Consensus 5 ~~~lY~~a~~~~~-~g~y~~Ai~~-f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~ 82 (203)
T PF13525_consen 5 AEALYQKALEALQ-QGDYEEAIKL-FEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYAL 82 (203)
T ss_dssp HHHHHHHHHHHHH-CT-HHHHHHH-HHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHH
T ss_pred HHHHHHHHHHHHH-CCCHHHHHHH-HHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHH
Confidence 4567888877664 3568888753 1111 233455557777778888889999999999999999888764 455
Q ss_pred HHHHHHHHhhCC-----------HHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhCCHHHHHHHHHHHhhccChhhHHH
Q 001481 327 MRYVDFMESKGG-----------REIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEK 395 (1071)
Q Consensus 327 ~~ya~~l~~~g~-----------~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~~A~~~~~~al~~~~p~~~~~ 395 (1071)
+..|..+..... ...|...|+..+.. .|+.+ -..+|+..+..+.+ ...+-
T Consensus 83 Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~-yP~S~--------------y~~~A~~~l~~l~~----~la~~ 143 (203)
T PF13525_consen 83 YMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKR-YPNSE--------------YAEEAKKRLAELRN----RLAEH 143 (203)
T ss_dssp HHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH--TTST--------------THHHHHHHHHHHHH----HHHHH
T ss_pred HHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHH-CcCch--------------HHHHHHHHHHHHHH----HHHHH
Confidence 555554433210 12444444444443 22222 22334443333321 12233
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcH---HHHHHHHHHHHhhcCCHHHHHH
Q 001481 396 VTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLP---LLYVQFSRLTYTTTGSADNARD 455 (1071)
Q Consensus 396 w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~---~l~~~~A~~~~~~~g~~e~Ar~ 455 (1071)
-+..++++.+.|.+..|+.-|+.+++. .|.+. .+...++..+. .+|..+.|..
T Consensus 144 e~~ia~~Y~~~~~y~aA~~r~~~v~~~------yp~t~~~~~al~~l~~~y~-~l~~~~~a~~ 199 (203)
T PF13525_consen 144 ELYIARFYYKRGKYKAAIIRFQYVIEN------YPDTPAAEEALARLAEAYY-KLGLKQAADT 199 (203)
T ss_dssp HHHHHHHHHCTT-HHHHHHHHHHHHHH------STTSHHHHHHHHHHHHHHH-HTT-HHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHH------CCCCchHHHHHHHHHHHHH-HhCChHHHHH
Confidence 445688889999999999999999998 55544 45556666666 7887775543
No 203
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.38 E-value=0.0006 Score=59.78 Aligned_cols=74 Identities=16% Similarity=0.192 Sum_probs=59.9
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhc-cCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhC
Q 001481 390 SRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQR-KFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHV 464 (1071)
Q Consensus 390 p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~-~~p~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~~~ 464 (1071)
|+...++..++.++.+.|++++|+.+|++|++...... ..+....++.++|.++. ..|++++|.++|+++++.+
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~-~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYY-RLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhh
Confidence 56678899999999999999999999999998842211 12234678899999998 9999999999999999753
No 204
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.37 E-value=0.00032 Score=54.18 Aligned_cols=43 Identities=19% Similarity=0.281 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCChHHHHHHHHH
Q 001481 433 PLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLLLEELIK 476 (1071)
Q Consensus 433 ~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~~~P~~~~lw~~~~~ 476 (1071)
|.+|+.+|.++. ..|++++|+++|+++++.+|++..+|..++.
T Consensus 1 p~~~~~la~~~~-~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYR-RLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 357899999998 9999999999999999999999999998875
No 205
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.35 E-value=0.6 Score=63.08 Aligned_cols=136 Identities=21% Similarity=0.227 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHhhcC-------CCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhccchHH
Q 001481 288 QLKNWHDYLSFAEKQGDFDWVVKLYERCLIP-------CADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVI 360 (1071)
Q Consensus 288 ~~~~W~~y~~~~~~~g~~~~a~~~yerAL~~-------~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i 360 (1071)
+.+.|...+..-....+..+-+-.++|++.. ...-.++|+.+|++....|.++.|...+-.|.+. ..|.+
T Consensus 1628 ~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~---r~~~i 1704 (2382)
T KOG0890|consen 1628 NSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKES---RLPEI 1704 (2382)
T ss_pred cchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhc---ccchH
Confidence 3367887777665555566667777777632 3455799999999999999999999998888875 47889
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhhccChh----------------hHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHH
Q 001481 361 HLFNARYKEQIGDTSAARAAFPESYIDSDSR----------------FIEKVTFKANMERRLGNF--VAACDTYKEALET 422 (1071)
Q Consensus 361 ~~~~a~~e~~~g~~~~A~~~~~~al~~~~p~----------------~~~~w~~~a~le~~~g~~--~~A~~~y~~Al~~ 422 (1071)
+...|++++..|+...|..+++..++...|+ ..++.+.++.+....|++ +...+.|..+.+.
T Consensus 1705 ~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ai 1784 (2382)
T KOG0890|consen 1705 VLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAI 1784 (2382)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 9999999999999999999999988433222 123455666666666665 5688999999998
Q ss_pred Hhhh
Q 001481 423 AAEQ 426 (1071)
Q Consensus 423 ~~~~ 426 (1071)
++.+
T Consensus 1785 l~ew 1788 (2382)
T KOG0890|consen 1785 LPEW 1788 (2382)
T ss_pred cccc
Confidence 5433
No 206
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.32 E-value=0.35 Score=52.06 Aligned_cols=142 Identities=13% Similarity=0.048 Sum_probs=85.6
Q ss_pred chHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 001481 22 GKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQ 101 (1071)
Q Consensus 22 ~~~~le~al~~nP~d~~~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P~s~~lW~~~a~~e~~~~~~e~A~~lferAL~ 101 (1071)
.+..+....+.+|.+......++-.+-.. .++..|-..|+.....+|.-.++-+-++....+.+-+..|..+......
T Consensus 29 aI~~l~s~~Er~p~~rAgLSlLgyCYY~~--Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D 106 (459)
T KOG4340|consen 29 AIQLLGSELERSPRSRAGLSLLGYCYYRL--QEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLD 106 (459)
T ss_pred HHHHHHHHHhcCccchHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcC
Confidence 34566666778898877776666554333 5899999999999999999998888888888888877777665543322
Q ss_pred hcCCCHHHHHHHHHHH----HhhCCChhHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHccCHHHHHHHHHHHhccC
Q 001481 102 SATYSVDVWFHYCSLS----MSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFP 175 (1071)
Q Consensus 102 ~~P~s~~lW~~y~~~~----~~~~~~~e~ar~l~erAL~~~~~~~~s~~lW~~yi~fe~~~~~~~~a~~iy~ral~~p 175 (1071)
...+...-+.+. .+. +++-.+|.+.+..-. ..--...+ .-.-+.-..|+++.+.+-|..++.+.
T Consensus 107 ----~~~L~~~~lqLqaAIkYse-~Dl~g~rsLveQlp~---en~Ad~~i--n~gCllykegqyEaAvqkFqaAlqvs 174 (459)
T KOG4340|consen 107 ----NPALHSRVLQLQAAIKYSE-GDLPGSRSLVEQLPS---ENEADGQI--NLGCLLYKEGQYEAAVQKFQAALQVS 174 (459)
T ss_pred ----CHHHHHHHHHHHHHHhccc-ccCcchHHHHHhccC---CCccchhc--cchheeeccccHHHHHHHHHHHHhhc
Confidence 223332222221 122 566666666654221 11001111 11112223467788888888887643
No 207
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.29 E-value=0.019 Score=58.88 Aligned_cols=201 Identities=17% Similarity=0.165 Sum_probs=133.0
Q ss_pred CHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhCCHHHHHHHHHH
Q 001481 304 DFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPE 383 (1071)
Q Consensus 304 ~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~~A~~~~~~ 383 (1071)
+-++|.-+|||.+ ++-..|-..-||.-|..++.+ .|+.|.++..++.++...|+++.|.++|+.
T Consensus 61 ~eeRA~l~fERGv---------------lYDSlGL~~LAR~DftQaLai-~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds 124 (297)
T COG4785 61 DEERAQLLFERGV---------------LYDSLGLRALARNDFSQALAI-RPDMPEVFNYLGIYLTQAGNFDAAYEAFDS 124 (297)
T ss_pred hHHHHHHHHHhcc---------------hhhhhhHHHHHhhhhhhhhhc-CCCcHHHHHHHHHHHHhcccchHHHHHhhh
Confidence 4567777787765 355566677788889999987 888899999999999999999999999999
Q ss_pred HhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcH--HHHHHHHHHHHhhcCCHHHHHHHH-HHH
Q 001481 384 SYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLP--LLYVQFSRLTYTTTGSADNARDIL-IDG 460 (1071)
Q Consensus 384 al~~~~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~--~l~~~~A~~~~~~~g~~e~Ar~i~-e~a 460 (1071)
.+ +++|.+--+..+.+....--|.+.-|.+-|-+-... +|.+| .+|+.+ -+ ..-+..+|+.-+ +++
T Consensus 125 ~~-ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~------D~~DPfR~LWLYl---~E-~k~dP~~A~tnL~qR~ 193 (297)
T COG4785 125 VL-ELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQD------DPNDPFRSLWLYL---NE-QKLDPKQAKTNLKQRA 193 (297)
T ss_pred Hh-ccCCcchHHHhccceeeeecCchHhhHHHHHHHHhc------CCCChHHHHHHHH---HH-hhCCHHHHHHHHHHHH
Confidence 99 889988777777766555568888887777666655 55555 355544 12 445667776643 444
Q ss_pred HhhCCChHHHHHHHHHHHHHcCCCCchhhHHHHHHHhhccCCcccccCChhhHHHHHHHHH--HHHHHhcCCHHHHHHHH
Q 001481 461 IKHVPNCKLLLEELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYL--QQFLDLCGTIHDIRNAW 538 (1071)
Q Consensus 461 l~~~P~~~~lw~~~~~~e~~~g~~~~a~~~r~l~e~Al~~~~d~~~~l~~~~~~~lw~~~l--~~~e~~~G~~e~a~~~~ 538 (1071)
- ..+.+.|--++ .+...|.... ..+++++..-..+ .....+.|-..|+ .+.....|.+++|..+|
T Consensus 194 ~---~~d~e~WG~~i-V~~yLgkiS~----e~l~~~~~a~a~~-----n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~Lf 260 (297)
T COG4785 194 E---KSDKEQWGWNI-VEFYLGKISE----ETLMERLKADATD-----NTSLAEHLTETYFYLGKYYLSLGDLDEATALF 260 (297)
T ss_pred H---hccHhhhhHHH-HHHHHhhccH----HHHHHHHHhhccc-----hHHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 3 33456665322 2333455443 3677777642111 1223344444443 14445679999999988
Q ss_pred HHHHHh
Q 001481 539 NQHIKL 544 (1071)
Q Consensus 539 ~ra~~~ 544 (1071)
+=++..
T Consensus 261 KLaian 266 (297)
T COG4785 261 KLAVAN 266 (297)
T ss_pred HHHHHH
Confidence 776654
No 208
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=97.28 E-value=0.0024 Score=60.96 Aligned_cols=104 Identities=13% Similarity=0.328 Sum_probs=72.4
Q ss_pred HHHHHHHHH-HHC--CCCHHHHHHHHHHHHHh----CCHHHHHHHHHHHHHh---------cCCCHHHHHHHHHHHHhhC
Q 001481 58 IGLVYDSFL-AEF--PLCYGYWRKYADHKARL----CSIDKVVEVFERAVQS---------ATYSVDVWFHYCSLSMSTF 121 (1071)
Q Consensus 58 a~~vyeraL-~~~--P~s~~lW~~~a~~e~~~----~~~e~A~~lferAL~~---------~P~s~~lW~~y~~~~~~~~ 121 (1071)
.+..|++.+ ... .+=...|..||+|.... +.-.....+++||++. +|..+++|+.|+++.
T Consensus 4 ~r~~~e~~i~~~~~~dDPL~~w~~yI~W~~~~~p~g~~~s~L~~lLerc~~~f~~~~~YknD~RyLkiWi~ya~~~---- 79 (125)
T smart00777 4 QRQAFEQELQDLYEGDDPLDLWLRYIKWTEENYPQGGKESGLLTLLERCIRYFEDDERYKNDPRYLKIWLKYADNC---- 79 (125)
T ss_pred HHHHHHHHHHhcccCCCChHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhc----
Confidence 345566555 211 12246788888886543 2334567778888876 366679999999873
Q ss_pred CChhHHHHHHHHHHHh-cCCCCCchHHHHHHHHHHHHccCHHHHHHHHHH
Q 001481 122 EDPNDVRRLFKRALSF-VGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQ 170 (1071)
Q Consensus 122 ~~~e~ar~l~erAL~~-~~~~~~s~~lW~~yi~fe~~~~~~~~a~~iy~r 170 (1071)
.+.+.+|...... +|.. ...+|..|+.+.+..+++.+|.+||++
T Consensus 80 ---~dp~~if~~L~~~~IG~~--~AlfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 80 ---DEPRELFQFLYSKGIGTK--LALFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred ---CCHHHHHHHHHHCCcchh--hHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 2357778766543 4543 568999999999999999999999975
No 209
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.26 E-value=0.00069 Score=52.27 Aligned_cols=42 Identities=19% Similarity=0.299 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 001481 74 GYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCS 115 (1071)
Q Consensus 74 ~lW~~~a~~e~~~~~~e~A~~lferAL~~~P~s~~lW~~y~~ 115 (1071)
..|..++..+...|++++|+++|+++|+.+|.+.++|..+++
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467777777777777888888888888888888777777654
No 210
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.25 E-value=0.11 Score=59.07 Aligned_cols=175 Identities=13% Similarity=0.036 Sum_probs=114.1
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHhhcC----CCCCHHHHHHHHHHHHh---hCCHHHHHHHHHHHHHHhhccchHHHH
Q 001481 290 KNWHDYLSFAEKQGDFDWVVKLYERCLIP----CADYPEFWMRYVDFMES---KGGREIASYALDRATQIFLKRLPVIHL 362 (1071)
Q Consensus 290 ~~W~~y~~~~~~~g~~~~a~~~yerAL~~----~p~~~~lW~~ya~~l~~---~g~~e~A~~il~rAl~~~~~~~p~i~~ 362 (1071)
++-+.+.-.+....+++..+.+.+..-.. .+....+-..||..+.+ .|+.++|+.++..++.......|+.+.
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g 221 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG 221 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence 45556666666677888888888876654 46678888999999999 789999999999987654556678888
Q ss_pred HHHHHHHH---------hCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHH----HHHHHHHHHHHHHhhhccC
Q 001481 363 FNARYKEQ---------IGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFV----AACDTYKEALETAAEQRKF 429 (1071)
Q Consensus 363 ~~a~~e~~---------~g~~~~A~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~----~A~~~y~~Al~~~~~~~~~ 429 (1071)
..++++.. ...+++|...|.++. ++.++. -.=++++.++...|... +.+++--+.-.++..+...
T Consensus 222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgF-e~~~~~-Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~ 299 (374)
T PF13281_consen 222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGF-EIEPDY-YSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSL 299 (374)
T ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHHH-cCCccc-cchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccc
Confidence 87776421 224788999999998 666543 23455566666666432 3333332222222222111
Q ss_pred CCcHHHHHH--HHHHHHhhcCCHHHHHHHHHHHHhhCCCh
Q 001481 430 HTLPLLYVQ--FSRLTYTTTGSADNARDILIDGIKHVPNC 467 (1071)
Q Consensus 430 p~~~~l~~~--~A~~~~~~~g~~e~Ar~i~e~al~~~P~~ 467 (1071)
......|.. ++.+.. ..||+++|.+.++++++..|..
T Consensus 300 ~~~~dYWd~ATl~Ea~v-L~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 300 EKMQDYWDVATLLEASV-LAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred cccccHHHHHHHHHHHH-HcCCHHHHHHHHHHHhhcCCcc
Confidence 222334432 222333 5799999999999999887643
No 211
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=97.22 E-value=0.00055 Score=48.69 Aligned_cols=31 Identities=26% Similarity=0.678 Sum_probs=21.5
Q ss_pred CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 001481 88 SIDKVVEVFERAVQSATYSVDVWFHYCSLSM 118 (1071)
Q Consensus 88 ~~e~A~~lferAL~~~P~s~~lW~~y~~~~~ 118 (1071)
+++.|+.+|++++..+|.+.++|+.|+.|+.
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e~ 32 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYAEFEE 32 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHHHHHh
Confidence 4566777777777777777777777777653
No 212
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=97.22 E-value=0.0011 Score=71.49 Aligned_cols=104 Identities=12% Similarity=-0.007 Sum_probs=82.4
Q ss_pred HHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhh
Q 001481 367 YKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTT 446 (1071)
Q Consensus 367 ~e~~~g~~~~A~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~ 446 (1071)
-+.+.|+|++|+.+|.+++ .+.|.++-.+.+.+..+.+...|.-|..-+..|+.+ +....++|...|..-. .
T Consensus 106 ~yFKQgKy~EAIDCYs~~i-a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL------d~~Y~KAYSRR~~AR~-~ 177 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAI-AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL------DKLYVKAYSRRMQARE-S 177 (536)
T ss_pred hhhhccchhHHHHHhhhhh-ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh------hHHHHHHHHHHHHHHH-H
Confidence 3456888888888888888 777877777888888888888888888888888887 4556677777777765 7
Q ss_pred cCCHHHHHHHHHHHHhhCCChHHHHHHHHHHH
Q 001481 447 TGSADNARDILIDGIKHVPNCKLLLEELIKFT 478 (1071)
Q Consensus 447 ~g~~e~Ar~i~e~al~~~P~~~~lw~~~~~~e 478 (1071)
+|.+.+|.+-|+.+|++.|++.++-..|+++.
T Consensus 178 Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~ 209 (536)
T KOG4648|consen 178 LGNNMEAKKDCETVLALEPKNIELKKSLARIN 209 (536)
T ss_pred HhhHHHHHHhHHHHHhhCcccHHHHHHHHHhc
Confidence 88889999999999999998888777776653
No 213
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.21 E-value=0.012 Score=67.69 Aligned_cols=70 Identities=11% Similarity=-0.047 Sum_probs=66.1
Q ss_pred CCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHhhcCCCCCHHH---HHHHHHHHHhhCCHHHHHHHHHHHHHH
Q 001481 283 PLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEF---WMRYVDFMESKGGREIASYALDRATQI 352 (1071)
Q Consensus 283 ~~~p~~~~~W~~y~~~~~~~g~~~~a~~~yerAL~~~p~~~~l---W~~ya~~l~~~g~~e~A~~il~rAl~~ 352 (1071)
+.+|+....|.+++..+...|++++|+..|++||..+|++.+. |++++.+|...|++++|+..|++|+++
T Consensus 69 ~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 69 EADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3678999999999999999999999999999999999999865 999999999999999999999999986
No 214
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.16 E-value=0.011 Score=67.74 Aligned_cols=164 Identities=12% Similarity=0.019 Sum_probs=110.7
Q ss_pred hCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhh----cc----------------c----
Q 001481 302 QGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFL----KR----------------L---- 357 (1071)
Q Consensus 302 ~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~----~~----------------~---- 357 (1071)
..++..-+++-.+||..+|++.++|+-++. +....+.+|..+|++|++.-. +. .
T Consensus 181 ERnp~aRIkaA~eALei~pdCAdAYILLAE--EeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~ 258 (539)
T PF04184_consen 181 ERNPQARIKAAKEALEINPDCADAYILLAE--EEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVL 258 (539)
T ss_pred cCCHHHHHHHHHHHHHhhhhhhHHHhhccc--ccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchh
Confidence 567777888889999999999999998875 344557899999999987411 00 0
Q ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHH
Q 001481 358 PVIHLFNARYKEQIGDTSAARAAFPESYIDSDS-RFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLY 436 (1071)
Q Consensus 358 p~i~~~~a~~e~~~g~~~~A~~~~~~al~~~~p-~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~ 436 (1071)
.-+...+|.+..+.|+.++|.+.|...+++... +...+...++..+...+.+.++.+++.+-=+. .-|..+.+.
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi-----~lpkSAti~ 333 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI-----SLPKSATIC 333 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc-----cCCchHHHH
Confidence 012333566678889999999999988855433 45667777777777888888888888774221 123344444
Q ss_pred HHHHHHHHhhcCC---------------HHHHHHHHHHHHhhCCChHHHHH
Q 001481 437 VQFSRLTYTTTGS---------------ADNARDILIDGIKHVPNCKLLLE 472 (1071)
Q Consensus 437 ~~~A~~~~~~~g~---------------~e~Ar~i~e~al~~~P~~~~lw~ 472 (1071)
+..|.+..+..+| ...|.+.+.+|++.+|+.+.+.+
T Consensus 334 YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLL 384 (539)
T PF04184_consen 334 YTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLL 384 (539)
T ss_pred HHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhh
Confidence 4444443322332 13466788888888888777544
No 215
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.15 E-value=0.0089 Score=61.93 Aligned_cols=148 Identities=14% Similarity=0.119 Sum_probs=92.1
Q ss_pred CCHHHHHHHHHHhhcCC------CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhCCHHH
Q 001481 303 GDFDWVVKLYERCLIPC------ADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSA 376 (1071)
Q Consensus 303 g~~~~a~~~yerAL~~~------p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~~ 376 (1071)
+++++|.++|.+|-... ..-.+.++..|.++.+.|.-.+|...|-.|-.. .+.++..+
T Consensus 28 ~k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~c----------------ykk~~~~e 91 (288)
T KOG1586|consen 28 NKYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANC----------------YKKVDPEE 91 (288)
T ss_pred cchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHH----------------hhccChHH
Confidence 36777878887775321 111233344444444444434444444333322 23446667
Q ss_pred HHHHHHHHhhccCh------hhHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhhcCC
Q 001481 377 ARAAFPESYIDSDS------RFIEKVTFKANMERR-LGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGS 449 (1071)
Q Consensus 377 A~~~~~~al~~~~p------~~~~~w~~~a~le~~-~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~g~ 449 (1071)
|..++++++ ++.. .-++.++..+.++.. +.+++.|+..|+.|-+....+.......+.++..|.+-. .++.
T Consensus 92 Av~cL~~ai-eIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa-~leq 169 (288)
T KOG1586|consen 92 AVNCLEKAI-EIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAA-QLEQ 169 (288)
T ss_pred HHHHHHHHH-HHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHH-HHHH
Confidence 777777776 3321 112335566665554 488999999999999987766655555678888888776 8899
Q ss_pred HHHHHHHHHHHHhhCCChH
Q 001481 450 ADNARDILIDGIKHVPNCK 468 (1071)
Q Consensus 450 ~e~Ar~i~e~al~~~P~~~ 468 (1071)
+.+|+++|++..+..-++.
T Consensus 170 Y~~Ai~iyeqva~~s~~n~ 188 (288)
T KOG1586|consen 170 YSKAIDIYEQVARSSLDNN 188 (288)
T ss_pred HHHHHHHHHHHHHHhccch
Confidence 9999999999887755544
No 216
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.13 E-value=0.17 Score=52.81 Aligned_cols=138 Identities=17% Similarity=0.132 Sum_probs=90.5
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHHHHhhcc-----chHHHHHHHHHHHH-hCCHHHHHHHHHHHhh-----ccChhhHHHH
Q 001481 328 RYVDFMESKGGREIASYALDRATQIFLKR-----LPVIHLFNARYKEQ-IGDTSAARAAFPESYI-----DSDSRFIEKV 396 (1071)
Q Consensus 328 ~ya~~l~~~g~~e~A~~il~rAl~~~~~~-----~p~i~~~~a~~e~~-~g~~~~A~~~~~~al~-----~~~p~~~~~w 396 (1071)
..++.+ +.++.++|..++++|+++|... -...++..+++++. ..+++.|+..|+.+-+ +.....-.-+
T Consensus 79 eA~~cy-kk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~ 157 (288)
T KOG1586|consen 79 EAANCY-KKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCL 157 (288)
T ss_pred HHHHHh-hccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHH
Confidence 334444 3457889999999999886431 12345566676654 5889999999999863 1112223446
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHH-HHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCh
Q 001481 397 TFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPL-LYVQFSRLTYTTTGSADNARDILIDGIKHVPNC 467 (1071)
Q Consensus 397 ~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~-l~~~~A~~~~~~~g~~e~Ar~i~e~al~~~P~~ 467 (1071)
++.+.+-...|.+.+|+++|+.....--.+.---...+ .++..|.+.. ...|.-.|+..+++....+|..
T Consensus 158 lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl-~~~D~v~a~~ALeky~~~dP~F 228 (288)
T KOG1586|consen 158 LKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHL-CKADEVNAQRALEKYQELDPAF 228 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhH-hcccHHHHHHHHHHHHhcCCcc
Confidence 67777777889999999999998765211110011222 3344444544 6689999999999999999964
No 217
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=97.12 E-value=0.0031 Score=60.29 Aligned_cols=106 Identities=21% Similarity=0.305 Sum_probs=68.3
Q ss_pred HHHHHHHhcccCcCCCCCChhHHHHHHHHHHHHHHh----CCHHHHHHHHHHhhcC---------CCCCHHHHHHHHHHH
Q 001481 267 INCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQ----GDFDWVVKLYERCLIP---------CADYPEFWMRYVDFM 333 (1071)
Q Consensus 267 ~~~fE~ai~~~~~~~~~~~p~~~~~W~~y~~~~~~~----g~~~~a~~~yerAL~~---------~p~~~~lW~~ya~~l 333 (1071)
+..||..|...+. ..+.+..|..|+.|.+.. +.-.....+++||+.. ++.+..+|+.|+.+.
T Consensus 5 r~~~e~~i~~~~~-----~dDPL~~w~~yI~W~~~~~p~g~~~s~L~~lLerc~~~f~~~~~YknD~RyLkiWi~ya~~~ 79 (125)
T smart00777 5 RQAFEQELQDLYE-----GDDPLDLWLRYIKWTEENYPQGGKESGLLTLLERCIRYFEDDERYKNDPRYLKIWLKYADNC 79 (125)
T ss_pred HHHHHHHHHhccc-----CCCChHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhc
Confidence 4566666633232 234578999999998752 2445678889998864 455668888888753
Q ss_pred HhhCCHHHHHHHHHHHHHHh-hccchHHHHHHHHHHHHhCCHHHHHHHHHH
Q 001481 334 ESKGGREIASYALDRATQIF-LKRLPVIHLFNARYKEQIGDTSAARAAFPE 383 (1071)
Q Consensus 334 ~~~g~~e~A~~il~rAl~~~-~~~~p~i~~~~a~~e~~~g~~~~A~~~~~~ 383 (1071)
++++++|.-....- ...++..|..||.+++..|++.+|.++|..
T Consensus 80 ------~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 80 ------DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred ------CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 23455554443310 113455677778888888888888887764
No 218
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.10 E-value=0.025 Score=61.44 Aligned_cols=155 Identities=11% Similarity=0.046 Sum_probs=89.9
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhhccChhhH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHH
Q 001481 361 HLFNARYKEQIGDTSAARAAFPESYIDSDSRFI---EKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYV 437 (1071)
Q Consensus 361 ~~~~a~~e~~~g~~~~A~~~~~~al~~~~p~~~---~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~ 437 (1071)
++..|.-....|++++|+..|++++ ...|... .+.+.++..+.+.|+++.|+..|++.++..+ ..+..+.++.
T Consensus 35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~-~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P---~~~~~~~a~Y 110 (243)
T PRK10866 35 IYATAQQKLQDGNWKQAITQLEALD-NRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNP---THPNIDYVLY 110 (243)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH-HhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc---CCCchHHHHH
Confidence 3334444455677777777777776 3444332 2335556666677788888888888877722 1334455566
Q ss_pred HHHHHHHhhc---------------CC---HHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCCCchhhHHHHHHHhhc
Q 001481 438 QFSRLTYTTT---------------GS---ADNARDILIDGIKHVPNCKLLLEELIKFTMVHGGRSHISIVDAVISNALY 499 (1071)
Q Consensus 438 ~~A~~~~~~~---------------g~---~e~Ar~i~e~al~~~P~~~~lw~~~~~~e~~~g~~~~a~~~r~l~e~Al~ 499 (1071)
..|.+.. .. .| ..+|++.|++.++.+|++.-.-...-.+.... ..+-++.+
T Consensus 111 ~~g~~~~-~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~---------~~la~~e~- 179 (243)
T PRK10866 111 MRGLTNM-ALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLK---------DRLAKYEL- 179 (243)
T ss_pred HHHHhhh-hcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHH---------HHHHHHHH-
Confidence 6665432 11 12 35677999999999998764332221111000 01111211
Q ss_pred cCCcccccCChhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcc
Q 001481 500 SRPDVLKVFSLEDVEDISSLYLQQFLDLCGTIHDIRNAWNQHIKLFPHTVR 550 (1071)
Q Consensus 500 ~~~d~~~~l~~~~~~~lw~~~l~~~e~~~G~~e~a~~~~~ra~~~~p~~~~ 550 (1071)
.+- +|..+.|.+..|..-++.+++.+|++..
T Consensus 180 ---------------~ia-----~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~ 210 (243)
T PRK10866 180 ---------------SVA-----EYYTKRGAYVAVVNRVEQMLRDYPDTQA 210 (243)
T ss_pred ---------------HHH-----HHHHHcCchHHHHHHHHHHHHHCCCCch
Confidence 111 5556678888888888888888888654
No 219
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.08 E-value=0.004 Score=58.56 Aligned_cols=93 Identities=24% Similarity=0.152 Sum_probs=64.6
Q ss_pred HHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhhc
Q 001481 368 KEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTT 447 (1071)
Q Consensus 368 e~~~g~~~~A~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~ 447 (1071)
+.+.|+++.|++.|.+++ .+.|..+.+|.+.+..++-.|+.++|.+-+++|+++..+. ..+.-..|+..|.++. ..
T Consensus 53 laE~g~Ld~AlE~F~qal-~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~--trtacqa~vQRg~lyR-l~ 128 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQAL-CLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ--TRTACQAFVQRGLLYR-LL 128 (175)
T ss_pred HHhccchHHHHHHHHHHH-HhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc--chHHHHHHHHHHHHHH-Hh
Confidence 345677777777777777 6677777777777777777777777777777777774322 1123356677777765 77
Q ss_pred CCHHHHHHHHHHHHhhC
Q 001481 448 GSADNARDILIDGIKHV 464 (1071)
Q Consensus 448 g~~e~Ar~i~e~al~~~ 464 (1071)
|+.+.||.-|+.|-++-
T Consensus 129 g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLG 145 (175)
T ss_pred CchHHHHHhHHHHHHhC
Confidence 77778887777776553
No 220
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.05 E-value=0.05 Score=56.91 Aligned_cols=148 Identities=16% Similarity=0.125 Sum_probs=89.0
Q ss_pred HHhCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhCCHHHHHH
Q 001481 300 EKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARA 379 (1071)
Q Consensus 300 ~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~~A~~ 379 (1071)
++...+.++..+|++|. ..|...|..+.|...++||-+. .+..+.++|+.
T Consensus 82 ke~~klsEvvdl~eKAs--------------~lY~E~GspdtAAmaleKAak~----------------lenv~Pd~Alq 131 (308)
T KOG1585|consen 82 KELSKLSEVVDLYEKAS--------------ELYVECGSPDTAAMALEKAAKA----------------LENVKPDDALQ 131 (308)
T ss_pred HHHHHhHHHHHHHHHHH--------------HHHHHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHH
Confidence 33445555666666554 3455667777777777777654 23556788888
Q ss_pred HHHHHhhccC---h--hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhhcCCHHHHH
Q 001481 380 AFPESYIDSD---S--RFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNAR 454 (1071)
Q Consensus 380 ~~~~al~~~~---p--~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~g~~e~Ar 454 (1071)
+|.+++.-+. . --.+.+-+.++++.+...+++|...|.+-......-...+...+.++....++. ...|+..|.
T Consensus 132 lYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L-~~~Dyv~ae 210 (308)
T KOG1585|consen 132 LYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYL-YAHDYVQAE 210 (308)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHh-hHHHHHHHH
Confidence 8888863211 1 113345555667777777877777766654443332334455566776655655 678999999
Q ss_pred HHHHHHHhhCC----ChHHHHHHHHHHH
Q 001481 455 DILIDGIKHVP----NCKLLLEELIKFT 478 (1071)
Q Consensus 455 ~i~e~al~~~P----~~~~lw~~~~~~e 478 (1071)
++|+..-.... .+......++.++
T Consensus 211 kc~r~~~qip~f~~sed~r~lenLL~ay 238 (308)
T KOG1585|consen 211 KCYRDCSQIPAFLKSEDSRSLENLLTAY 238 (308)
T ss_pred HHhcchhcCccccChHHHHHHHHHHHHh
Confidence 99998765422 2334455555543
No 221
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.05 E-value=0.046 Score=62.99 Aligned_cols=68 Identities=12% Similarity=-0.087 Sum_probs=62.3
Q ss_pred CCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhccchH---HHHHHHHHHHHhCCHHHHHHHHHHHhh
Q 001481 318 PCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPV---IHLFNARYKEQIGDTSAARAAFPESYI 386 (1071)
Q Consensus 318 ~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~---i~~~~a~~e~~~g~~~~A~~~~~~al~ 386 (1071)
..|++...|++++..|...|++++|+..|++|+++ .|+.+. .|+..+.++..+|++++|+..|.+|++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL-~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL-NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 46999999999999999999999999999999997 777664 489999999999999999999999994
No 222
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.04 E-value=0.011 Score=59.83 Aligned_cols=57 Identities=14% Similarity=0.223 Sum_probs=34.8
Q ss_pred HHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001481 365 ARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALET 422 (1071)
Q Consensus 365 a~~e~~~g~~~~A~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~ 422 (1071)
|....+++..+.|..-..++| ++.|.+.+++.+.+.++.+...+++|+.-|++.+++
T Consensus 141 aaa~iKl~k~e~aI~dcsKai-el~pty~kAl~RRAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 141 AAALIKLRKWESAIEDCSKAI-ELNPTYEKALERRAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred HHHHHHhhhHHHHHHHHHhhH-hcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 334445556666666666666 566666666666666666666666666666666665
No 223
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.00 E-value=0.011 Score=59.87 Aligned_cols=107 Identities=15% Similarity=0.066 Sum_probs=84.7
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHhhcCCCCCH-----HHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhccchHHHHHHHHH
Q 001481 293 HDYLSFAEKQGDFDWVVKLYERCLIPCADYP-----EFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARY 367 (1071)
Q Consensus 293 ~~y~~~~~~~g~~~~a~~~yerAL~~~p~~~-----~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~ 367 (1071)
..-+.-+..+|+++.|..-|.+||..||... .++.+.|-.+.+.++.+.|++-+.+|+++ .|.........|.+
T Consensus 99 K~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel-~pty~kAl~RRAea 177 (271)
T KOG4234|consen 99 KKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIEL-NPTYEKALERRAEA 177 (271)
T ss_pred HHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc-CchhHHHHHHHHHH
Confidence 3344455678999999999999999998763 57777888889999999999999999997 44444556666788
Q ss_pred HHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHH
Q 001481 368 KEQIGDTSAARAAFPESYIDSDSRFIEKVTFKAN 401 (1071)
Q Consensus 368 e~~~g~~~~A~~~~~~al~~~~p~~~~~w~~~a~ 401 (1071)
+++...+++|+.-|++.+ +++|..-.+--..+.
T Consensus 178 yek~ek~eealeDyKki~-E~dPs~~ear~~i~r 210 (271)
T KOG4234|consen 178 YEKMEKYEEALEDYKKIL-ESDPSRREAREAIAR 210 (271)
T ss_pred HHhhhhHHHHHHHHHHHH-HhCcchHHHHHHHHh
Confidence 889999999999999999 778865544444443
No 224
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=96.97 E-value=0.0047 Score=61.99 Aligned_cols=93 Identities=15% Similarity=0.096 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHH
Q 001481 374 TSAARAAFPESYIDSDSRFIEKVTFKANMERRLG----------NFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLT 443 (1071)
Q Consensus 374 ~~~A~~~~~~al~~~~p~~~~~w~~~a~le~~~g----------~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~ 443 (1071)
|+.||+.++... ..+|...+.+++|+..+.++. -+++|+.-|++||.+ .|....++..+|..+
T Consensus 7 FE~ark~aea~y-~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I------~P~~hdAlw~lGnA~ 79 (186)
T PF06552_consen 7 FEHARKKAEAAY-AKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI------NPNKHDALWCLGNAY 79 (186)
T ss_dssp HHHHHHHHHHHH-HH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-------TT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc------CCchHHHHHHHHHHH
Confidence 456666666666 456777777777766544432 245566677777777 788888888888876
Q ss_pred HhhcC-----------CHHHHHHHHHHHHhhCCChHHHHHHH
Q 001481 444 YTTTG-----------SADNARDILIDGIKHVPNCKLLLEEL 474 (1071)
Q Consensus 444 ~~~~g-----------~~e~Ar~i~e~al~~~P~~~~lw~~~ 474 (1071)
. ..+ .+++|..+|++|+...|++..++..+
T Consensus 80 t-s~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksL 120 (186)
T PF06552_consen 80 T-SLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSL 120 (186)
T ss_dssp H-HHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred H-HHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 5 322 36788888888888899887766544
No 225
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.96 E-value=0.015 Score=62.53 Aligned_cols=97 Identities=16% Similarity=0.127 Sum_probs=62.8
Q ss_pred HHhCCHHHHHHHHHHHhhccChh---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHh
Q 001481 369 EQIGDTSAARAAFPESYIDSDSR---FIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYT 445 (1071)
Q Consensus 369 ~~~g~~~~A~~~~~~al~~~~p~---~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~ 445 (1071)
.+.|+|..|...|..-++. .|+ ..++++=++......|+++.|..+|.++++.. ...+..++.++.+|.++.
T Consensus 152 ~ksgdy~~A~~~F~~fi~~-YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~---P~s~KApdallKlg~~~~- 226 (262)
T COG1729 152 YKSGDYAEAEQAFQAFIKK-YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDY---PKSPKAPDALLKLGVSLG- 226 (262)
T ss_pred HHcCCHHHHHHHHHHHHHc-CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhC---CCCCCChHHHHHHHHHHH-
Confidence 3456677777777766632 332 23334444555666777777777777777652 224556677777777776
Q ss_pred hcCCHHHHHHHHHHHHhhCCChHHH
Q 001481 446 TTGSADNARDILIDGIKHVPNCKLL 470 (1071)
Q Consensus 446 ~~g~~e~Ar~i~e~al~~~P~~~~l 470 (1071)
++|+.++|+.+|+..++.+|+....
T Consensus 227 ~l~~~d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 227 RLGNTDEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred HhcCHHHHHHHHHHHHHHCCCCHHH
Confidence 7777777888887777777776543
No 226
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.95 E-value=0.014 Score=62.56 Aligned_cols=108 Identities=15% Similarity=0.078 Sum_probs=85.3
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHhhc--cchHHHHHHHHHHHHhCCHHHHHHHHHHHhhcc--ChhhHHHHHHHHH
Q 001481 326 WMRYVDFMESKGGREIASYALDRATQIFLK--RLPVIHLFNARYKEQIGDTSAARAAFPESYIDS--DSRFIEKVTFKAN 401 (1071)
Q Consensus 326 W~~ya~~l~~~g~~e~A~~il~rAl~~~~~--~~p~i~~~~a~~e~~~g~~~~A~~~~~~al~~~--~p~~~~~w~~~a~ 401 (1071)
.|..|.-+...|++.+|...|..-+..|.. ..|+.++++++.....|++++|..+|.+++++. .|..++..++++.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 444455567788899999999888876322 235788889999999999999999999998543 2455788999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHH
Q 001481 402 MERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQF 439 (1071)
Q Consensus 402 le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~ 439 (1071)
+..++|+.++|+.+|+..++. .|..+..-..-
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~------YP~t~aA~~Ak 255 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKR------YPGTDAAKLAK 255 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHH------CCCCHHHHHHH
Confidence 999999999999999999998 67766555443
No 227
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.92 E-value=2.3 Score=57.81 Aligned_cols=221 Identities=12% Similarity=0.142 Sum_probs=137.5
Q ss_pred hhHHHHHHHHHHHHHHhCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhccc-------h
Q 001481 286 DIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRL-------P 358 (1071)
Q Consensus 286 p~~~~~W~~y~~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~-------p 358 (1071)
..-.+.|..++.+....|.+++|....-.|.+.. -+++.++.|+++|..|+...|..+++..++...+++ |
T Consensus 1667 ~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p 1744 (2382)
T KOG0890|consen 1667 SRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTP 1744 (2382)
T ss_pred chhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccc
Confidence 3445899999999999999999999888888754 678999999999999999999999999998755542 1
Q ss_pred ---------HHHHHHHHHHHHhCCHH--HHHHHHHHHhhccChhhHHHHHH----HHHHH--------HHcCCHHH---H
Q 001481 359 ---------VIHLFNARYKEQIGDTS--AARAAFPESYIDSDSRFIEKVTF----KANME--------RRLGNFVA---A 412 (1071)
Q Consensus 359 ---------~i~~~~a~~e~~~g~~~--~A~~~~~~al~~~~p~~~~~w~~----~a~le--------~~~g~~~~---A 412 (1071)
.+.+..+.+.+..++++ ...+.|..+. ++.|...+-++. |..++ ++.|++.. +
T Consensus 1745 ~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~-ail~ewe~~hy~l~~yy~kll~~~~~~~~E~~g~~~~~l~~ 1823 (2382)
T KOG0890|consen 1745 QSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAK-AILPEWEDKHYHLGKYYDKLLEDYKSNKMEKSGRVLSLLKA 1823 (2382)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHH-HHcccccCceeeHHHHHHHHhhhhhcccccccccHHHHHHH
Confidence 23445566777777753 5677888887 555521111111 12221 12356655 3
Q ss_pred HHHHHHHHHHHhhhc---cCCCcHHHHHHHHHHHHh--hcC-------CHHHHHHHHHHHHhhCCChHHHHHHHHHHHHH
Q 001481 413 CDTYKEALETAAEQR---KFHTLPLLYVQFSRLTYT--TTG-------SADNARDILIDGIKHVPNCKLLLEELIKFTMV 480 (1071)
Q Consensus 413 ~~~y~~Al~~~~~~~---~~p~~~~l~~~~A~~~~~--~~g-------~~e~Ar~i~e~al~~~P~~~~lw~~~~~~e~~ 480 (1071)
.-.|.+++.. +... ..|..-.+|+.+|..... ..+ +.+.--+..+.++...|.. .++..|..+..+
T Consensus 1824 ~~~~~~sl~y-g~~~iyqsmPRllTLWLD~~t~~~~~ek~~r~ei~s~~~~~in~~i~~~~~~lp~Y-~f~ta~sQLlSR 1901 (2382)
T KOG0890|consen 1824 IYFFGRALYY-GNQHLYQSMPRLLTLWLDIGTHISSVEKAPRGEIVSKNLKLINSLIEEALEHLPTY-QFYTAYSQLLSR 1901 (2382)
T ss_pred HHHHHHHHHh-cchhHHHhhhHHHHHHHhhcchhcccccCChhhhhhhhHHHHHHHHHHHHHhCcch-HHHHHHHHHHHH
Confidence 4444566654 1111 123334567776555431 122 2333344556666666643 344566677665
Q ss_pred cC--CCCchhhHHHHHHHhhccCCcccccCChhhHHHHHHHHH
Q 001481 481 HG--GRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYL 521 (1071)
Q Consensus 481 ~g--~~~~a~~~r~l~e~Al~~~~d~~~~l~~~~~~~lw~~~l 521 (1071)
.. +.+-+..++.|+.+.+...| ...+|...+
T Consensus 1902 icH~~~dV~~vl~~II~~l~~~YP----------qq~lW~~~a 1934 (2382)
T KOG0890|consen 1902 ICHPNQDVARVLKHIIAKLVLAYP----------QQTLWQSAA 1934 (2382)
T ss_pred HcCCchHHHHHHHHHHHHHHHhCc----------hHHHHHHHH
Confidence 43 44555566677777665555 346787766
No 228
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=96.91 E-value=0.0014 Score=46.60 Aligned_cols=32 Identities=22% Similarity=0.357 Sum_probs=30.1
Q ss_pred CCHHHHHHHHHHHHhhCCChHHHHHHHHHHHH
Q 001481 448 GSADNARDILIDGIKHVPNCKLLLEELIKFTM 479 (1071)
Q Consensus 448 g~~e~Ar~i~e~al~~~P~~~~lw~~~~~~e~ 479 (1071)
|+.+.|+.+|+++++.+|.+..+|..|++|+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e~ 32 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEFEE 32 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHHHh
Confidence 57899999999999999999999999999985
No 229
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.90 E-value=0.009 Score=56.22 Aligned_cols=93 Identities=18% Similarity=0.199 Sum_probs=64.9
Q ss_pred HHHHhCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhCCHHHH
Q 001481 298 FAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAA 377 (1071)
Q Consensus 298 ~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~~A 377 (1071)
.+.+.|+.+.|++.|.++|..+|....+|.+.+..+.-.|+.++|.+-+++|+++-.+.-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~t-------------------- 111 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQT-------------------- 111 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccc--------------------
Confidence 334567888888888888888888888888888888888888888888888887511110
Q ss_pred HHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001481 378 RAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALET 422 (1071)
Q Consensus 378 ~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~ 422 (1071)
...-..++..+.+++..|+.|.||.-|+.|..+
T Consensus 112 ------------rtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 112 ------------RTACQAFVQRGLLYRLLGNDDAARADFEAAAQL 144 (175)
T ss_pred ------------hHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHh
Confidence 011223555566667777777777777777665
No 230
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=96.90 E-value=0.035 Score=63.80 Aligned_cols=120 Identities=18% Similarity=0.161 Sum_probs=97.5
Q ss_pred CCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhc---cchHHHHHHHHHHHHhCCHHHHHHHHHHHhh-ccC-----
Q 001481 319 CADYPEFWMRYVDFMESKGGREIASYALDRATQIFLK---RLPVIHLFNARYKEQIGDTSAARAAFPESYI-DSD----- 389 (1071)
Q Consensus 319 ~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~---~~p~i~~~~a~~e~~~g~~~~A~~~~~~al~-~~~----- 389 (1071)
.......|+.++....+.|.++.|...+.++...... ..|.+.+.++++....|+.++|...+...++ .+.
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~ 221 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDS 221 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccc
Confidence 4566789999999999999999999999998875211 1578899999999999999999988877764 110
Q ss_pred ---------------------------hhhHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHHHhhhccCCCcHHHH
Q 001481 390 ---------------------------SRFIEKVTFKANMERRL------GNFVAACDTYKEALETAAEQRKFHTLPLLY 436 (1071)
Q Consensus 390 ---------------------------p~~~~~w~~~a~le~~~------g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~ 436 (1071)
....+++..++.+.... +..+++...|.+|++. .+...+.|
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~------~~~~~k~~ 295 (352)
T PF02259_consen 222 ISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKL------DPSWEKAW 295 (352)
T ss_pred ccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHh------ChhHHHHH
Confidence 12356688888877777 8899999999999998 78888999
Q ss_pred HHHHHHHH
Q 001481 437 VQFSRLTY 444 (1071)
Q Consensus 437 ~~~A~~~~ 444 (1071)
..||.++.
T Consensus 296 ~~~a~~~~ 303 (352)
T PF02259_consen 296 HSWALFND 303 (352)
T ss_pred HHHHHHHH
Confidence 99999876
No 231
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.86 E-value=0.0039 Score=54.55 Aligned_cols=64 Identities=17% Similarity=0.144 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHhhc---c---ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001481 359 VIHLFNARYKEQIGDTSAARAAFPESYID---S---DSRFIEKVTFKANMERRLGNFVAACDTYKEALET 422 (1071)
Q Consensus 359 ~i~~~~a~~e~~~g~~~~A~~~~~~al~~---~---~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~ 422 (1071)
.++...|.++...|++++|+..|+++++- . .+..+.++...+.++...|++++|+.+|++|+++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 34555555666666666666666666521 1 1234666778888888888888888888888876
No 232
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.85 E-value=1.4 Score=50.76 Aligned_cols=187 Identities=15% Similarity=0.057 Sum_probs=116.5
Q ss_pred HHHHHHhCCHHHHHHHHHHhhcCC---CC-------CHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhccchH--HHHH
Q 001481 296 LSFAEKQGDFDWVVKLYERCLIPC---AD-------YPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPV--IHLF 363 (1071)
Q Consensus 296 ~~~~~~~g~~~~a~~~yerAL~~~---p~-------~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~--i~~~ 363 (1071)
+.+....|++.+|......+...| |. ...+.+-++.+-...|-++.|..-|..|++.....+-. +-.+
T Consensus 330 v~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nln 409 (629)
T KOG2300|consen 330 VMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLN 409 (629)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 333345688777666555555422 22 34566667777777788999999999998863222211 2233
Q ss_pred HHHHHHHhCCHHHHHHHHHHHhhc-cCh-----hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHH
Q 001481 364 NARYKEQIGDTSAARAAFPESYID-SDS-----RFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYV 437 (1071)
Q Consensus 364 ~a~~e~~~g~~~~A~~~~~~al~~-~~p-----~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~ 437 (1071)
+|-.+.+.|+-+.-.++++..--. ..+ --..+++.++-+....+++.+|+....+.++..+..+-.....-..+
T Consensus 410 lAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~Lv 489 (629)
T KOG2300|consen 410 LAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLV 489 (629)
T ss_pred HHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHH
Confidence 455677777766555555543210 011 01345777888888899999999999999998532222222233345
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHhh---CCC-hHHHHHH--HHHHHHHcCC
Q 001481 438 QFSRLTYTTTGSADNARDILIDGIKH---VPN-CKLLLEE--LIKFTMVHGG 483 (1071)
Q Consensus 438 ~~A~~~~~~~g~~e~Ar~i~e~al~~---~P~-~~~lw~~--~~~~e~~~g~ 483 (1071)
-++.+.. ..|+..+++++..-++.. .|+ .+.+|.. |-++....|+
T Consensus 490 LLs~v~l-slgn~~es~nmvrpamqlAkKi~Di~vqLws~si~~~L~~a~g~ 540 (629)
T KOG2300|consen 490 LLSHVFL-SLGNTVESRNMVRPAMQLAKKIPDIPVQLWSSSILTDLYQALGE 540 (629)
T ss_pred HHHHHHH-HhcchHHHHhccchHHHHHhcCCCchHHHHHHHHHHHHHHHhCc
Confidence 5666666 899999999998888765 344 4567863 3455555555
No 233
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.84 E-value=0.15 Score=53.56 Aligned_cols=123 Identities=15% Similarity=0.064 Sum_probs=70.2
Q ss_pred HcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHh------hCCChHHHHHHHHHHH
Q 001481 405 RLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIK------HVPNCKLLLEELIKFT 478 (1071)
Q Consensus 405 ~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~------~~P~~~~lw~~~~~~e 478 (1071)
+.-+.+.|+.+|.+++..+.......--.+++-..++++. +.+.+++|-..|.+-.. ..+.....+...+-+.
T Consensus 122 env~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lV-rl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~ 200 (308)
T KOG1585|consen 122 ENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLV-RLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVY 200 (308)
T ss_pred hcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhh-hhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHH
Confidence 3457889999999999987654443334567777777777 77788877766655332 2333334444444444
Q ss_pred HHcCCCCchhhHHHHHHHhhccCCcccccCChhhHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 001481 479 MVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQQFLDLCGTIHDIRNAW 538 (1071)
Q Consensus 479 ~~~g~~~~a~~~r~l~e~Al~~~~d~~~~l~~~~~~~lw~~~l~~~e~~~G~~e~a~~~~ 538 (1071)
....|+..++ .+++..... | ..+.+++...+-. .+ .+ .+-|+.+.+.++.
T Consensus 201 L~~~Dyv~ae---kc~r~~~qi-p---~f~~sed~r~len-LL-~a-yd~gD~E~~~kvl 250 (308)
T KOG1585|consen 201 LYAHDYVQAE---KCYRDCSQI-P---AFLKSEDSRSLEN-LL-TA-YDEGDIEEIKKVL 250 (308)
T ss_pred hhHHHHHHHH---HHhcchhcC-c---cccChHHHHHHHH-HH-HH-hccCCHHHHHHHH
Confidence 4444554443 555554432 2 2344444433332 22 12 2457888887775
No 234
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=96.66 E-value=0.008 Score=65.18 Aligned_cols=101 Identities=13% Similarity=0.092 Sum_probs=63.1
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHh
Q 001481 292 WHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQI 371 (1071)
Q Consensus 292 W~~y~~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~ 371 (1071)
..+.+.-+.++|++++|+++|.+++...|.++.++.+.|..|.+..++..|..-++.|+.+ .+..-..|...+..-..+
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL-d~~Y~KAYSRR~~AR~~L 178 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL-DKLYVKAYSRRMQARESL 178 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh-hHHHHHHHHHHHHHHHHH
Confidence 4455666667788888888888888888888888888887777777777777767666654 111112222222223345
Q ss_pred CCHHHHHHHHHHHhhccChhhHH
Q 001481 372 GDTSAARAAFPESYIDSDSRFIE 394 (1071)
Q Consensus 372 g~~~~A~~~~~~al~~~~p~~~~ 394 (1071)
|.+++|.+-|++++ ++.|++.+
T Consensus 179 g~~~EAKkD~E~vL-~LEP~~~E 200 (536)
T KOG4648|consen 179 GNNMEAKKDCETVL-ALEPKNIE 200 (536)
T ss_pred hhHHHHHHhHHHHH-hhCcccHH
Confidence 55666666666665 55555443
No 235
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.64 E-value=0.083 Score=58.92 Aligned_cols=120 Identities=11% Similarity=-0.028 Sum_probs=72.8
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHhh---ccChhh--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHH
Q 001481 363 FNARYKEQIGDTSAARAAFPESYI---DSDSRF--IEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYV 437 (1071)
Q Consensus 363 ~~a~~e~~~g~~~~A~~~~~~al~---~~~p~~--~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~ 437 (1071)
.++..+...|+++.|.+.|++++. ++.... +...+.+++.+.-...+.+|+.++.+-+++..+-.........+.
T Consensus 240 NlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~Racw 319 (639)
T KOG1130|consen 240 NLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACW 319 (639)
T ss_pred ccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 334444556666666666666541 111111 333556666666667788888888887776543333334456667
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHhhC----CChH--HHHHHHHHHHHHcCC
Q 001481 438 QFSRLTYTTTGSADNARDILIDGIKHV----PNCK--LLLEELIKFTMVHGG 483 (1071)
Q Consensus 438 ~~A~~~~~~~g~~e~Ar~i~e~al~~~----P~~~--~lw~~~~~~e~~~g~ 483 (1071)
.+|..+. ..|.-++|....+..++.. -.+. ....++.++....|-
T Consensus 320 SLgna~~-alg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~ 370 (639)
T KOG1130|consen 320 SLGNAFN-ALGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLILELGQ 370 (639)
T ss_pred HHHHHHH-hhhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHHHhCC
Confidence 7777776 8888899988888877652 2222 244556666666663
No 236
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.64 E-value=0.047 Score=54.18 Aligned_cols=64 Identities=9% Similarity=0.160 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhc
Q 001481 74 GYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFV 138 (1071)
Q Consensus 74 ~lW~~~a~~e~~~~~~e~A~~lferAL~~~P~s~~lW~~y~~~~~~~~~~~e~ar~l~erAL~~~ 138 (1071)
.....+++.....+++++|..++.+++..+|.+..+|..+++.+... |+...|.++|++..+.+
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~-g~~~~A~~~Y~~~~~~l 126 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQ-GRRAEALRVYERYRRRL 126 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHT-T-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHH
Confidence 45666666677788999999999999999999999999999999988 99999999998877643
No 237
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.63 E-value=0.041 Score=53.63 Aligned_cols=104 Identities=13% Similarity=0.047 Sum_probs=61.1
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhhccCh---hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHH
Q 001481 361 HLFNARYKEQIGDTSAARAAFPESYIDSDS---RFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYV 437 (1071)
Q Consensus 361 ~~~~a~~e~~~g~~~~A~~~~~~al~~~~p---~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~ 437 (1071)
++.-|.-....|++++|++.|+.... ..| -...+-+.++..+.+.|++++|+..|++-|++.+ .++..+-++.
T Consensus 13 ly~~a~~~l~~~~Y~~A~~~le~L~~-ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP---~hp~vdYa~Y 88 (142)
T PF13512_consen 13 LYQEAQEALQKGNYEEAIKQLEALDT-RYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHP---THPNVDYAYY 88 (142)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHh-cCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC---CCCCccHHHH
Confidence 33334444566777777777776652 222 2233444444455666777777777777777721 1223334455
Q ss_pred HHHHHHHhhcCC---------------HHHHHHHHHHHHhhCCChHH
Q 001481 438 QFSRLTYTTTGS---------------ADNARDILIDGIKHVPNCKL 469 (1071)
Q Consensus 438 ~~A~~~~~~~g~---------------~e~Ar~i~e~al~~~P~~~~ 469 (1071)
..|.... ..+. ...|+.-|++.|+.+|++.-
T Consensus 89 ~~gL~~~-~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~y 134 (142)
T PF13512_consen 89 MRGLSYY-EQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEY 134 (142)
T ss_pred HHHHHHH-HHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChh
Confidence 5555444 3333 67888888899988888753
No 238
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=96.61 E-value=0.0025 Score=44.56 Aligned_cols=28 Identities=25% Similarity=0.538 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q 001481 55 IEMIGLVYDSFLAEFPLCYGYWRKYADHK 83 (1071)
Q Consensus 55 ~~~a~~vyeraL~~~P~s~~lW~~~a~~e 83 (1071)
+++||.||+|++..+|. ++.|++|+++|
T Consensus 3 ~dRAR~IyeR~v~~hp~-~k~WikyAkFE 30 (32)
T PF02184_consen 3 FDRARSIYERFVLVHPE-VKNWIKYAKFE 30 (32)
T ss_pred HHHHHHHHHHHHHhCCC-chHHHHHHHhh
Confidence 44555555555555433 44555555544
No 239
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.55 E-value=0.96 Score=48.13 Aligned_cols=132 Identities=16% Similarity=0.076 Sum_probs=72.3
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhCCHHHHHHHHHHHhhc---cCh--hhHHHHHHHHHH
Q 001481 328 RYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYID---SDS--RFIEKVTFKANM 402 (1071)
Q Consensus 328 ~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~~A~~~~~~al~~---~~p--~~~~~w~~~a~l 402 (1071)
.|+.++.-.|.+.-....+.+.++...+..|.+...++++-+..|+.+.|...|++.-+. ++. ....+....+.+
T Consensus 182 ~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i 261 (366)
T KOG2796|consen 182 SMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFL 261 (366)
T ss_pred HHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhh
Confidence 344455555555555566666655433444555555666666666666666666644321 111 222333344444
Q ss_pred HHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCC
Q 001481 403 ERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPN 466 (1071)
Q Consensus 403 e~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~~~P~ 466 (1071)
+.-.+++..|...|.+++.. ++.++.+..+.|.++. -.|+...|.+..+.++...|.
T Consensus 262 ~lg~nn~a~a~r~~~~i~~~------D~~~~~a~NnKALcll-Ylg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 262 HLGQNNFAEAHRFFTEILRM------DPRNAVANNNKALCLL-YLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred eecccchHHHHHHHhhcccc------CCCchhhhchHHHHHH-HHHHHHHHHHHHHHHhccCCc
Confidence 44455666666666666665 5555555556666555 566666666666666666664
No 240
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.55 E-value=2.6 Score=53.63 Aligned_cols=142 Identities=13% Similarity=0.116 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHH
Q 001481 291 NWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQ 370 (1071)
Q Consensus 291 ~W~~y~~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~ 370 (1071)
.|-...++.+++|-+.+|..+|.--.. ....++..||..+.+...+++|.-.|+ +
T Consensus 910 ~~~e~~n~I~kh~Ly~~aL~ly~~~~e---~~k~i~~~ya~hL~~~~~~~~Aal~Ye----------------------~ 964 (1265)
T KOG1920|consen 910 YFPECKNYIKKHGLYDEALALYKPDSE---KQKVIYEAYADHLREELMSDEAALMYE----------------------R 964 (1265)
T ss_pred ccHHHHHHHHhcccchhhhheeccCHH---HHHHHHHHHHHHHHHhccccHHHHHHH----------------------H
Confidence 455556666777755555555442221 234677788888887777776655554 4
Q ss_pred hCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHc-CCHHHH----HHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHh
Q 001481 371 IGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRL-GNFVAA----CDTYKEALETAAEQRKFHTLPLLYVQFSRLTYT 445 (1071)
Q Consensus 371 ~g~~~~A~~~~~~al~~~~p~~~~~w~~~a~le~~~-g~~~~A----~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~ 445 (1071)
.|+.++|.+.|..+.. |...+.+..++ ..-++. +.+..+..+. .-++..|.++..
T Consensus 965 ~GklekAl~a~~~~~d---------Wr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~-----------~kh~eAa~il~e 1024 (1265)
T KOG1920|consen 965 CGKLEKALKAYKECGD---------WREALSLAAQLSEGKDELVILAEELVSRLVEQ-----------RKHYEAAKILLE 1024 (1265)
T ss_pred hccHHHHHHHHHHhcc---------HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHc-----------ccchhHHHHHHH
Confidence 4556666666665541 33333333322 122222 2233332222 112344555444
Q ss_pred hcCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCCC
Q 001481 446 TTGSADNARDILIDGIKHVPNCKLLLEELIKFTMVHGGRS 485 (1071)
Q Consensus 446 ~~g~~e~Ar~i~e~al~~~P~~~~lw~~~~~~e~~~g~~~ 485 (1071)
.++++++|..+|-+|- .|...++.....++.+
T Consensus 1025 ~~sd~~~av~ll~ka~--------~~~eAlrva~~~~~~d 1056 (1265)
T KOG1920|consen 1025 YLSDPEEAVALLCKAK--------EWEEALRVASKAKRDD 1056 (1265)
T ss_pred HhcCHHHHHHHHhhHh--------HHHHHHHHHHhcccch
Confidence 6888999988888774 4666666655555443
No 241
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.51 E-value=0.16 Score=53.81 Aligned_cols=120 Identities=14% Similarity=0.072 Sum_probs=62.8
Q ss_pred hCCHHHHHHHHHHhhcCC-CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhccc-----hHHHHHHHHHHHHhCCHH
Q 001481 302 QGDFDWVVKLYERCLIPC-ADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRL-----PVIHLFNARYKEQIGDTS 375 (1071)
Q Consensus 302 ~g~~~~a~~~yerAL~~~-p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~-----p~i~~~~a~~e~~~g~~~ 375 (1071)
.|.+.-...+|.+.+..+ +..+.+-..++..-...|+.+.|...|++.-+...+-+ -.++.+.+.++.-.+++.
T Consensus 190 ~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a 269 (366)
T KOG2796|consen 190 MKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFA 269 (366)
T ss_pred chhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchH
Confidence 344555555666655544 45555555566666666666666665554433211100 123333344444455566
Q ss_pred HHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001481 376 AARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALET 422 (1071)
Q Consensus 376 ~A~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~ 422 (1071)
.|...|.+++ ..++.++-+....+-+..-.|+...|++..+.++..
T Consensus 270 ~a~r~~~~i~-~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 270 EAHRFFTEIL-RMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred HHHHHHhhcc-ccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 6666666665 455555555555555555556666666666666555
No 242
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.50 E-value=0.17 Score=58.46 Aligned_cols=129 Identities=12% Similarity=0.080 Sum_probs=87.2
Q ss_pred HHhhCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhCCHHHHHHHHHHHhhcc-------------Ch---------
Q 001481 333 MESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDS-------------DS--------- 390 (1071)
Q Consensus 333 l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~~A~~~~~~al~~~-------------~p--------- 390 (1071)
.|+.-+...-++.-.+|+++ .|+|+..|..+| ++....+.+|.++|++|++.. .+
T Consensus 178 AWRERnp~aRIkaA~eALei-~pdCAdAYILLA--EEeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rd 254 (539)
T PF04184_consen 178 AWRERNPQARIKAAKEALEI-NPDCADAYILLA--EEEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRD 254 (539)
T ss_pred HHhcCCHHHHHHHHHHHHHh-hhhhhHHHhhcc--cccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccc
Confidence 34445566667777889987 566666555543 344666888999999887410 00
Q ss_pred h--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCC--cHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhh-CC
Q 001481 391 R--FIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHT--LPLLYVQFSRLTYTTTGSADNARDILIDGIKH-VP 465 (1071)
Q Consensus 391 ~--~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~--~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~~-~P 465 (1071)
. ...+-..++.+.++.|..++|++.|+..++. +|. .-.+..++..++. +.+.+.++.+++.+-=+. -|
T Consensus 255 t~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke------~p~~~~l~IrenLie~LL-elq~Yad~q~lL~kYdDi~lp 327 (539)
T PF04184_consen 255 TNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKE------FPNLDNLNIRENLIEALL-ELQAYADVQALLAKYDDISLP 327 (539)
T ss_pred cchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhh------CCccchhhHHHHHHHHHH-hcCCHHHHHHHHHHhccccCC
Confidence 0 1223345677889999999999999999987 333 3456777777777 899999999988875322 35
Q ss_pred ChHHHH
Q 001481 466 NCKLLL 471 (1071)
Q Consensus 466 ~~~~lw 471 (1071)
+++.+.
T Consensus 328 kSAti~ 333 (539)
T PF04184_consen 328 KSATIC 333 (539)
T ss_pred chHHHH
Confidence 555543
No 243
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=96.42 E-value=0.11 Score=53.38 Aligned_cols=190 Identities=13% Similarity=0.038 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Q 001481 290 KNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKE 369 (1071)
Q Consensus 290 ~~W~~y~~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~ 369 (1071)
.+..+.+.++.+.|-.+-|+.-|.++|...|+.++++.-++.++...|+++.|.++|+-.+++ .|...-.++..+....
T Consensus 66 ~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL-Dp~y~Ya~lNRgi~~Y 144 (297)
T COG4785 66 QLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL-DPTYNYAHLNRGIALY 144 (297)
T ss_pred HHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc-CCcchHHHhccceeee
Confidence 344555555666677778888999999999999999999999999999999999999998886 3333333333332223
Q ss_pred HhCCHHHHHHHHHHHhhccChhh--HHHHHHHHHHHHHcCCHHHHHH-HHHHHHHHHhhhccCCCcHHHHHHHHHHHHhh
Q 001481 370 QIGDTSAARAAFPESYIDSDSRF--IEKVTFKANMERRLGNFVAACD-TYKEALETAAEQRKFHTLPLLYVQFSRLTYTT 446 (1071)
Q Consensus 370 ~~g~~~~A~~~~~~al~~~~p~~--~~~w~~~a~le~~~g~~~~A~~-~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~ 446 (1071)
--|++.-|..-+.+-. .-+|+. -.+|+-+. | +.-+..+|+. +.+|+-.. + .+.|- |-.+.+ -
T Consensus 145 Y~gR~~LAq~d~~~fY-Q~D~~DPfR~LWLYl~--E-~k~dP~~A~tnL~qR~~~~------d---~e~WG-~~iV~~-y 209 (297)
T COG4785 145 YGGRYKLAQDDLLAFY-QDDPNDPFRSLWLYLN--E-QKLDPKQAKTNLKQRAEKS------D---KEQWG-WNIVEF-Y 209 (297)
T ss_pred ecCchHhhHHHHHHHH-hcCCCChHHHHHHHHH--H-hhCCHHHHHHHHHHHHHhc------c---Hhhhh-HHHHHH-H
Confidence 3567776666555554 224432 23454443 2 2334555554 44555544 1 11121 111111 2
Q ss_pred cCCHHHHHHHHHHHHhhCCChH-------HHHHHHHHHHHHcCCCCchhhHHHHHHHhhc
Q 001481 447 TGSADNARDILIDGIKHVPNCK-------LLLEELIKFTMVHGGRSHISIVDAVISNALY 499 (1071)
Q Consensus 447 ~g~~e~Ar~i~e~al~~~P~~~-------~lw~~~~~~e~~~g~~~~a~~~r~l~e~Al~ 499 (1071)
.|.+.+ ...++++....-++. +.+..+++.....|+.+++. .+|+-|+.
T Consensus 210 LgkiS~-e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~---~LfKLaia 265 (297)
T COG4785 210 LGKISE-ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEAT---ALFKLAVA 265 (297)
T ss_pred HhhccH-HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHH---HHHHHHHH
Confidence 333221 223444443333332 34555566666778877764 88888875
No 244
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.39 E-value=0.045 Score=53.34 Aligned_cols=73 Identities=12% Similarity=0.016 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCChHH
Q 001481 393 IEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKL 469 (1071)
Q Consensus 393 ~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~~~P~~~~ 469 (1071)
...++.-|.-..+.|++++|++.|+......+ ..+....+-+.+|..++ ..|++++|+..|++.|+++|.++.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP---~g~ya~qAqL~l~yayy-~~~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYP---FGEYAEQAQLDLAYAYY-KQGDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC---CCcccHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCCCC
Confidence 45566667767788999999999999877732 23445678888888888 999999999999999999998754
No 245
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.35 E-value=0.12 Score=56.96 Aligned_cols=190 Identities=13% Similarity=0.009 Sum_probs=116.0
Q ss_pred HHHHHHhCCHHHHHHHHHHhhcCCC--C----CHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhc----cc-----hHH
Q 001481 296 LSFAEKQGDFDWVVKLYERCLIPCA--D----YPEFWMRYVDFMESKGGREIASYALDRATQIFLK----RL-----PVI 360 (1071)
Q Consensus 296 ~~~~~~~g~~~~a~~~yerAL~~~p--~----~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~----~~-----p~i 360 (1071)
+......+-+.++.+.|+.|+...- . .-.++..++.++....++++|.....+|.++... +. ..+
T Consensus 129 ~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~ 208 (518)
T KOG1941|consen 129 GNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMS 208 (518)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHH
Confidence 3333445667888888999886421 1 2367888899999999999999999999886321 10 122
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhhc----c-ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHH
Q 001481 361 HLFNARYKEQIGDTSAARAAFPESYID----S-DSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLL 435 (1071)
Q Consensus 361 ~~~~a~~e~~~g~~~~A~~~~~~al~~----~-~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l 435 (1071)
.+..+-.+...|++-.|.+..+.+.+- - .+-..+-..-++++++..|+.|.|..-|+.|......-.+.-....+
T Consensus 209 lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~a 288 (518)
T KOG1941|consen 209 LYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEA 288 (518)
T ss_pred HHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 333344567788888888888877531 1 13445667788999999999999999999998774322222222334
Q ss_pred HHHHHHHHHhhcCCHHH-----HHHHHHHHHhhCCC-----h-HHHHHHHHHHHHHcCCCCc
Q 001481 436 YVQFSRLTYTTTGSADN-----ARDILIDGIKHVPN-----C-KLLLEELIKFTMVHGGRSH 486 (1071)
Q Consensus 436 ~~~~A~~~~~~~g~~e~-----Ar~i~e~al~~~P~-----~-~~lw~~~~~~e~~~g~~~~ 486 (1071)
....|+++. ...-..+ |.+.-+++++.... . ..+...++.+++..|..++
T Consensus 289 l~g~Akc~~-~~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~ 349 (518)
T KOG1941|consen 289 LDGAAKCLE-TLRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDE 349 (518)
T ss_pred HHHHHHHHH-HHHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhH
Confidence 444444443 2222222 55555555544221 1 1234455555555554443
No 246
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.34 E-value=0.52 Score=50.12 Aligned_cols=207 Identities=16% Similarity=0.042 Sum_probs=136.7
Q ss_pred HhCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhC-CHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhCCHH-HHH
Q 001481 301 KQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKG-GREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTS-AAR 378 (1071)
Q Consensus 301 ~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g-~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~-~A~ 378 (1071)
+.....+|..+-+.||..+|-+..+|.-.-.++...+ ++.+-.+.+++.++- .|++=.+|...-.+.+..|+.. +-+
T Consensus 55 ~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~-npKNYQvWHHRr~ive~l~d~s~rEL 133 (318)
T KOG0530|consen 55 KNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIED-NPKNYQVWHHRRVIVELLGDPSFREL 133 (318)
T ss_pred ccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHh-CccchhHHHHHHHHHHHhcCcccchH
Confidence 3456789999999999999999999987777666554 355666777777765 3444468877777788888877 777
Q ss_pred HHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhhcCCH-----HHH
Q 001481 379 AAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSA-----DNA 453 (1071)
Q Consensus 379 ~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~g~~-----e~A 453 (1071)
++.++++ ..+.++..+|-..--+.+..++++.-.....+.|+. +..+-.+|...-.+.....|-. +.-
T Consensus 134 ef~~~~l-~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~------Di~NNSAWN~Ryfvi~~~~~~~~~~~le~E 206 (318)
T KOG0530|consen 134 EFTKLML-DDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEE------DIRNNSAWNQRYFVITNTKGVISKAELERE 206 (318)
T ss_pred HHHHHHH-hccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHH------hhhccchhheeeEEEEeccCCccHHHHHHH
Confidence 8888888 567788889988888888888899888888888876 3333344432211111012322 233
Q ss_pred HHHHHHHHhhCCChHHHHHHHHHHHHH-cCCCCchhhHHHHHHHhhccCCcccccCChhhHHHHHHHH
Q 001481 454 RDILIDGIKHVPNCKLLLEELIKFTMV-HGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLY 520 (1071)
Q Consensus 454 r~i~e~al~~~P~~~~lw~~~~~~e~~-~g~~~~a~~~r~l~e~Al~~~~d~~~~l~~~~~~~lw~~~ 520 (1071)
.....+.+...|++...|..+.-+... .| ...-..+...++..+...+ ..+|..-..|-..|
T Consensus 207 l~yt~~~I~~vP~NeSaWnYL~G~l~~d~g-l~s~s~vv~f~~~l~~~~~----~~sP~lla~l~d~~ 269 (318)
T KOG0530|consen 207 LNYTKDKILLVPNNESAWNYLKGLLELDSG-LSSDSKVVSFVENLYLQLP----KRSPFLLAFLLDLY 269 (318)
T ss_pred HHHHHHHHHhCCCCccHHHHHHHHHHhccC-CcCCchHHHHHHHHhhccC----CCChhHHHHHHHHH
Confidence 455677888999999999988888876 34 2221223345555442222 23344444455555
No 247
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=96.33 E-value=0.005 Score=43.09 Aligned_cols=29 Identities=24% Similarity=0.570 Sum_probs=23.0
Q ss_pred CHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 001481 88 SIDKVVEVFERAVQSATYSVDVWFHYCSLS 117 (1071)
Q Consensus 88 ~~e~A~~lferAL~~~P~s~~lW~~y~~~~ 117 (1071)
.++.|+.||+|.|..+| +++.|+.|++|+
T Consensus 2 E~dRAR~IyeR~v~~hp-~~k~WikyAkFE 30 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHP-EVKNWIKYAKFE 30 (32)
T ss_pred hHHHHHHHHHHHHHhCC-CchHHHHHHHhh
Confidence 46788888888888875 688888888885
No 248
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.33 E-value=4.7 Score=50.43 Aligned_cols=27 Identities=4% Similarity=0.274 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHH
Q 001481 145 HTMWDKYIEFEISQQRWSSLAQIFVQT 171 (1071)
Q Consensus 145 ~~lW~~yi~fe~~~~~~~~a~~iy~ra 171 (1071)
..+|...++--...+.+..|+.-|-|+
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyika 1130 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA 1130 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhc
Confidence 568888877777777777777777666
No 249
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.29 E-value=0.32 Score=52.85 Aligned_cols=150 Identities=12% Similarity=0.028 Sum_probs=106.2
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHc
Q 001481 327 MRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRL 406 (1071)
Q Consensus 327 ~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~~A~~~~~~al~~~~p~~~~~w~~~a~le~~~ 406 (1071)
+.-+.-+...|++.+|...|..++.. .+.+..+.+.+++++...|+++.|..++...-.+..-+-.......+.+..+.
T Consensus 138 ~~~~~~~~~~e~~~~a~~~~~~al~~-~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qa 216 (304)
T COG3118 138 LAEAKELIEAEDFGEAAPLLKQALQA-APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQA 216 (304)
T ss_pred HHHhhhhhhccchhhHHHHHHHHHHh-CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHH
Confidence 33444566778899999999999986 66667888899999999999999999988753221111122223355666666
Q ss_pred CCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCC--hHHHHHHHHHHHHHcCCC
Q 001481 407 GNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPN--CKLLLEELIKFTMVHGGR 484 (1071)
Q Consensus 407 g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~~~P~--~~~lw~~~~~~e~~~g~~ 484 (1071)
.+..+...+-.+ +.. +|.+..+-+.+|..+. ..|+.++|.+.+-..|+++-. +...-..++++....|..
T Consensus 217 a~~~~~~~l~~~-~aa------dPdd~~aa~~lA~~~~-~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~ 288 (304)
T COG3118 217 AATPEIQDLQRR-LAA------DPDDVEAALALADQLH-LVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPA 288 (304)
T ss_pred hcCCCHHHHHHH-HHh------CCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCC
Confidence 555554444333 344 6889999999999998 999999999999888887654 445666677777666644
Q ss_pred C
Q 001481 485 S 485 (1071)
Q Consensus 485 ~ 485 (1071)
+
T Consensus 289 D 289 (304)
T COG3118 289 D 289 (304)
T ss_pred C
Confidence 3
No 250
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.28 E-value=0.35 Score=55.19 Aligned_cols=85 Identities=7% Similarity=-0.009 Sum_probs=56.9
Q ss_pred CCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHh---hccchHHHHHHHHHHHH---hCCHHHHHHHHHHHhhccChhhHH
Q 001481 321 DYPEFWMRYVDFMESKGGREIASYALDRATQIF---LKRLPVIHLFNARYKEQ---IGDTSAARAAFPESYIDSDSRFIE 394 (1071)
Q Consensus 321 ~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~---~~~~p~i~~~~a~~e~~---~g~~~~A~~~~~~al~~~~p~~~~ 394 (1071)
...++-+.+...|....+++..+.+.+..-.+. ....+.+-+.||-.+.+ .|+.++|+.++..++........+
T Consensus 139 ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d 218 (374)
T PF13281_consen 139 LSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPD 218 (374)
T ss_pred cChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChH
Confidence 345666777777777777887777776554421 12234677778877777 788889998888866455556667
Q ss_pred HHHHHHHHHHH
Q 001481 395 KVTFKANMERR 405 (1071)
Q Consensus 395 ~w~~~a~le~~ 405 (1071)
++..++.+++.
T Consensus 219 ~~gL~GRIyKD 229 (374)
T PF13281_consen 219 TLGLLGRIYKD 229 (374)
T ss_pred HHHHHHHHHHH
Confidence 77777665543
No 251
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.23 E-value=0.0034 Score=45.39 Aligned_cols=33 Identities=15% Similarity=0.221 Sum_probs=29.1
Q ss_pred HHHHhhcCCCCCHHHHHHHHHHHHhhCCHHHHH
Q 001481 311 LYERCLIPCADYPEFWMRYVDFMESKGGREIAS 343 (1071)
Q Consensus 311 ~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~ 343 (1071)
+|+|||+.+|++.++|+.+|.++...|++++|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 478999999999999999999999999988875
No 252
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.22 E-value=0.31 Score=48.22 Aligned_cols=107 Identities=17% Similarity=0.071 Sum_probs=74.9
Q ss_pred HHhCCHHHHHHHHHHhhcCCCCC-----H-HHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhCC
Q 001481 300 EKQGDFDWVVKLYERCLIPCADY-----P-EFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGD 373 (1071)
Q Consensus 300 ~~~g~~~~a~~~yerAL~~~p~~-----~-~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~ 373 (1071)
...++...+...+++++...... . .-|.. ..+..++.... .+...++..+...|+
T Consensus 17 ~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~------------~~r~~l~~~~~-------~~~~~l~~~~~~~~~ 77 (146)
T PF03704_consen 17 ARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVE------------PERERLRELYL-------DALERLAEALLEAGD 77 (146)
T ss_dssp HHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHH------------HHHHHHHHHHH-------HHHHHHHHHHHHTT-
T ss_pred HHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHH------------HHHHHHHHHHH-------HHHHHHHHHHHhccC
Confidence 45678888999999999753211 1 12322 22233333221 244556677788999
Q ss_pred HHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhh
Q 001481 374 TSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQ 426 (1071)
Q Consensus 374 ~~~A~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~ 426 (1071)
+++|..++.+++ ..+|-+..+|..++.++...|+...|.++|+++...+...
T Consensus 78 ~~~a~~~~~~~l-~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~e 129 (146)
T PF03704_consen 78 YEEALRLLQRAL-ALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREE 129 (146)
T ss_dssp HHHHHHHHHHHH-HHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 999999999999 7899999999999999999999999999999998886543
No 253
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.13 E-value=12 Score=53.27 Aligned_cols=241 Identities=12% Similarity=0.117 Sum_probs=133.1
Q ss_pred CChhHHHHHHHHHHHHHHhCCHHHHHHHHHHhh---c--------CCCCCHHHH--HHHHHHHHhhCCHHHHHHHHHHHH
Q 001481 284 LDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCL---I--------PCADYPEFW--MRYVDFMESKGGREIASYALDRAT 350 (1071)
Q Consensus 284 ~~p~~~~~W~~y~~~~~~~g~~~~a~~~yerAL---~--------~~p~~~~lW--~~ya~~l~~~g~~e~A~~il~rAl 350 (1071)
..-++...|..+..|-.. -+.-+..+|+--. . .-+.++.+| ..+|++...+|-.+.+...+.+..
T Consensus 2686 ~~~Dd~~~Wsdl~~WRq~--~y~~I~~~~~~~~~~~~~~~ns~~~~~Gyhe~A~~in~fakvArkh~l~~vcl~~L~~iy 2763 (3550)
T KOG0889|consen 2686 NVWDDMNQWSDLITWRQH--AYSMINKAYLPLVPYKQNASNSNNLYRGYHELAWAINRFAKVARKHGLPDVCLNQLAKIY 2763 (3550)
T ss_pred CcchhHHHHHHHHHHHHH--HHHHHHHHhcccchhhhccCCcchHHHhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Confidence 334556677777766421 1223333333311 1 113334444 346777777788888888887776
Q ss_pred HHhhccch--HHHHHHH---HHHH-HhCCHHHHHHHHHHH-hhcc-ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001481 351 QIFLKRLP--VIHLFNA---RYKE-QIGDTSAARAAFPES-YIDS-DSRFIEKVTFKANMERRLGNFVAACDTYKEALET 422 (1071)
Q Consensus 351 ~~~~~~~p--~i~~~~a---~~e~-~~g~~~~A~~~~~~a-l~~~-~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~ 422 (1071)
.+ |..+ ++...+. +++. ..+....+.++.+.. +..+ +.-....+...+.|..+.|..++|-..|..|+.+
T Consensus 2764 tl--p~veiqdaF~K~req~~c~l~~~~e~~~gLevi~sTNl~yF~~~q~aeff~lkG~f~~kL~~~eeAn~~fs~AvQi 2841 (3550)
T KOG0889|consen 2764 TL--PNVEIQDAFQKLREQAKCYLQNKNELKTGLEVIESTNLMYFSDRQKAEFFTLKGMFLEKLGKFEEANKAFSAAVQI 2841 (3550)
T ss_pred cc--CcchHHHHHHHHHHHHHHHhcChHHHHHHHHHHhcccHHHHhhHHHHHHHHhhhHHHHHhcCcchhHHHHHHHHHH
Confidence 53 2222 1111111 1111 111222333333222 1000 1123556778888999999999999999999999
Q ss_pred HhhhccCCCcHHHHHHHHHHHHhh----cCC---HHHHHHHHHHHHhhCCChH--HHHHHHHHHHHHcCCCCchhhHHHH
Q 001481 423 AAEQRKFHTLPLLYVQFSRLTYTT----TGS---ADNARDILIDGIKHVPNCK--LLLEELIKFTMVHGGRSHISIVDAV 493 (1071)
Q Consensus 423 ~~~~~~~p~~~~l~~~~A~~~~~~----~g~---~e~Ar~i~e~al~~~P~~~--~lw~~~~~~e~~~g~~~~a~~~r~l 493 (1071)
+....++|..||...... .++ -..|..+|-+|+..+-.+. .+...-+.+. ...+... .+-.+
T Consensus 2842 ------~~~l~KaW~~Wg~y~~~~f~~e~~ni~~a~~avsCyLqA~~~~~~skaRk~iakvLwLl-s~dda~~--~l~~~ 2912 (3550)
T KOG0889|consen 2842 ------DDGLGKAWAEWGKYLDNRFNKEPVNISFACNAVSCYLQAARLYNSSKARKLIAKVLWLL-SFDDSLG--TLGDV 2912 (3550)
T ss_pred ------HhhhHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhccccchhhHHHHHHHHHHH-Hhccccc--hHHHH
Confidence 566789999999986532 122 3457777888887664432 2222222222 2222221 12366
Q ss_pred HHHhhccCCcccccCChhhHHHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHhCCCC
Q 001481 494 ISNALYSRPDVLKVFSLEDVEDISSLYLQQFL--DLCGTIHDIRNAWNQHIKLFPHT 548 (1071)
Q Consensus 494 ~e~Al~~~~d~~~~l~~~~~~~lw~~~l~~~e--~~~G~~e~a~~~~~ra~~~~p~~ 548 (1071)
|++-+.. -+.-.|.-|+-++. ..++..+.++.++.+..+..|-.
T Consensus 2913 ~~k~l~~-----------ip~~~wl~~IPQLl~sLs~~e~~~~~~iL~kia~~yPQa 2958 (3550)
T KOG0889|consen 2913 FDKFLGE-----------IPVWNWLYFIPQLLTSLSKKEAKLVRLILIKIAKSYPQA 2958 (3550)
T ss_pred HHHhhcc-----------CCchhhhhhhHHHHhhccccchhHHHHHHHHHHHhchHH
Confidence 6666542 22345777773332 45678888888888888888873
No 254
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.03 E-value=0.84 Score=48.90 Aligned_cols=185 Identities=16% Similarity=0.091 Sum_probs=111.3
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHhhcCCCC---CHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhccchHH-HHHH
Q 001481 289 LKNWHDYLSFAEKQGDFDWVVKLYERCLIPCAD---YPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVI-HLFN 364 (1071)
Q Consensus 289 ~~~W~~y~~~~~~~g~~~~a~~~yerAL~~~p~---~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i-~~~~ 364 (1071)
.+.|..-+.-+...|++++|+..|++.....|. ...+-++++..+.+.++++.|+..++|-+.. .|..|++ |..|
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l-yP~~~n~dY~~Y 112 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL-YPTHPNADYAYY 112 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CCCCCChhHHHH
Confidence 456777777777899999999999999976554 4678888888888999999999999999987 5666543 2223
Q ss_pred HHHHHH-------hCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHH
Q 001481 365 ARYKEQ-------IGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYV 437 (1071)
Q Consensus 365 a~~e~~-------~g~~~~A~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~ 437 (1071)
...+.. ..+...++..|. ....+..+.-+-.-+.++-.+.... .-.....=+
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~---------------~f~~~i~ryPnS~Ya~dA~~~i~~~------~d~LA~~Em 171 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFA---------------AFKELVQRYPNSRYAPDAKARIVKL------NDALAGHEM 171 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHH---------------HHHHHHHHCCCCcchhhHHHHHHHH------HHHHHHHHH
Confidence 222221 112222222222 2222222222222222222222111 001122335
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHhhCCChH---HHHHHHHHHHHHcCCCCchhhHHHHHHH
Q 001481 438 QFSRLTYTTTGSADNARDILIDGIKHVPNCK---LLLEELIKFTMVHGGRSHISIVDAVISN 496 (1071)
Q Consensus 438 ~~A~~~~~~~g~~e~Ar~i~e~al~~~P~~~---~lw~~~~~~e~~~g~~~~a~~~r~l~e~ 496 (1071)
..|+++. +.|.+..|..-++..++.+|+.. +....+.+.....|-.+.+..+.++++.
T Consensus 172 ~IaryY~-kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 172 AIARYYL-KRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHH-HhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 5677777 88999999999999999988754 3344444555567777766555555544
No 255
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.02 E-value=1.6 Score=46.86 Aligned_cols=162 Identities=15% Similarity=0.017 Sum_probs=112.9
Q ss_pred HHHHHH-HHHHHhCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhccchHH----HHHHH
Q 001481 291 NWHDYL-SFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVI----HLFNA 365 (1071)
Q Consensus 291 ~W~~y~-~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i----~~~~a 365 (1071)
+|..++ .++...|++++|..+..+.. .-++...-..++.+..+++.|+..++++..+ +...+ --.|.
T Consensus 109 i~~l~aa~i~~~~~~~deAl~~~~~~~-----~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv 180 (299)
T KOG3081|consen 109 IDLLLAAIIYMHDGDFDEALKALHLGE-----NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWV 180 (299)
T ss_pred HHHHHhhHHhhcCCChHHHHHHHhccc-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHH
Confidence 555543 45667889999998888732 3344444455667777889999999998876 22222 22334
Q ss_pred HHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHh
Q 001481 366 RYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYT 445 (1071)
Q Consensus 366 ~~e~~~g~~~~A~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~ 445 (1071)
.+-...+++.+|.-+|+..- +..+.++.+.+..+.+....|++++|..+++.|+.. ++.++...+++..+-.
T Consensus 181 ~la~ggek~qdAfyifeE~s-~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k------d~~dpetL~Nliv~a~- 252 (299)
T KOG3081|consen 181 KLATGGEKIQDAFYIFEELS-EKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK------DAKDPETLANLIVLAL- 252 (299)
T ss_pred HHhccchhhhhHHHHHHHHh-cccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc------cCCCHHHHHHHHHHHH-
Confidence 44444557889999999987 433446777888888889999999999999999998 7888999988877655
Q ss_pred hcCCHHHHHHHHH-HHHhhCCChH
Q 001481 446 TTGSADNARDILI-DGIKHVPNCK 468 (1071)
Q Consensus 446 ~~g~~e~Ar~i~e-~al~~~P~~~ 468 (1071)
..|.-.++..-+- +....+|..+
T Consensus 253 ~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 253 HLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred HhCCChHHHHHHHHHHHhcCCcch
Confidence 6666555544444 4444455443
No 256
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.96 E-value=0.47 Score=51.96 Aligned_cols=157 Identities=12% Similarity=-0.009 Sum_probs=93.9
Q ss_pred HhCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhccchH---HHHHHHHHHHHhCCHHHH
Q 001481 301 KQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPV---IHLFNARYKEQIGDTSAA 377 (1071)
Q Consensus 301 ~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~---i~~~~a~~e~~~g~~~~A 377 (1071)
..|+.-+|....++.|...|.+--.|..--..+.-.|+.+..+..++|.+-..++..|. ++-+|+--+++.|-+++|
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 35666677777777777777776666655555555677777777777776544445552 333455556777788888
Q ss_pred HHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHH
Q 001481 378 RAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDIL 457 (1071)
Q Consensus 378 ~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~g~~e~Ar~i~ 457 (1071)
.+.-++++ .+++...-+....+.++.-.|.+.++.+...+.-..-.. ..-....-|-.+|.++. +.+.++.|..||
T Consensus 195 Ek~A~ral-qiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~--s~mlasHNyWH~Al~~i-E~aeye~aleIy 270 (491)
T KOG2610|consen 195 EKQADRAL-QINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQ--SWMLASHNYWHTALFHI-EGAEYEKALEIY 270 (491)
T ss_pred HHHHHhhc-cCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhh--hhHHHhhhhHHHHHhhh-cccchhHHHHHH
Confidence 88877777 666644433334455555567777776665544322100 00011223445555555 567778888887
Q ss_pred HHHH
Q 001481 458 IDGI 461 (1071)
Q Consensus 458 e~al 461 (1071)
.+-+
T Consensus 271 D~ei 274 (491)
T KOG2610|consen 271 DREI 274 (491)
T ss_pred HHHH
Confidence 7654
No 257
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=95.93 E-value=0.052 Score=56.64 Aligned_cols=98 Identities=11% Similarity=0.017 Sum_probs=58.0
Q ss_pred CCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhhcCCHH
Q 001481 372 GDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSAD 451 (1071)
Q Consensus 372 g~~~~A~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~g~~e 451 (1071)
.+|+.|...|.+|| .++|..+..|.+.+....+..+++.+..-..+|+++ .|+..+..+.+|..+. ....++
T Consensus 24 k~y~~ai~~y~raI-~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql------~~N~vk~h~flg~~~l-~s~~~~ 95 (284)
T KOG4642|consen 24 KRYDDAIDCYSRAI-CINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL------DPNLVKAHYFLGQWLL-QSKGYD 95 (284)
T ss_pred hhhchHHHHHHHHH-hcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc------ChHHHHHHHHHHHHHH-hhcccc
Confidence 34556666666666 556666666666666666666666666666666666 5555666666666655 566666
Q ss_pred HHHHHHHHHHhh-----CCChHHHHHHHHHH
Q 001481 452 NARDILIDGIKH-----VPNCKLLLEELIKF 477 (1071)
Q Consensus 452 ~Ar~i~e~al~~-----~P~~~~lw~~~~~~ 477 (1071)
+|++++.+|..+ ++.-.++|..+...
T Consensus 96 eaI~~Lqra~sl~r~~~~~~~~di~~~L~~a 126 (284)
T KOG4642|consen 96 EAIKVLQRAYSLLREQPFTFGDDIPKALRDA 126 (284)
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHH
Confidence 666666666432 12233455555444
No 258
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=95.86 E-value=0.017 Score=41.32 Aligned_cols=34 Identities=15% Similarity=0.246 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCh
Q 001481 433 PLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNC 467 (1071)
Q Consensus 433 ~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~~~P~~ 467 (1071)
+++|..+|.+++ ..|++++|++.|+++++++|++
T Consensus 1 a~~~~~lg~~~~-~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYY-QLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHCcCC
Confidence 468899999998 9999999999999999999974
No 259
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=95.65 E-value=0.012 Score=42.54 Aligned_cols=34 Identities=24% Similarity=0.289 Sum_probs=31.3
Q ss_pred HHHHHHHHHhhhccCCCcHHHHHHHHHHHHhhcCCHHHHHH
Q 001481 415 TYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARD 455 (1071)
Q Consensus 415 ~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~g~~e~Ar~ 455 (1071)
+|++||++ .|.++.+|.++|.++. ..|++++|++
T Consensus 1 ~y~kAie~------~P~n~~a~~nla~~~~-~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIEL------NPNNAEAYNNLANLYL-NQGDYEEAIA 34 (34)
T ss_pred ChHHHHHH------CCCCHHHHHHHHHHHH-HCcCHHhhcC
Confidence 48999999 8999999999999998 9999999974
No 260
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=95.57 E-value=0.063 Score=54.09 Aligned_cols=61 Identities=11% Similarity=-0.071 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCC----------HHHHHHHHHHHHHHhhccchHHHHHHHH
Q 001481 305 FDWVVKLYERCLIPCADYPEFWMRYVDFMESKGG----------REIASYALDRATQIFLKRLPVIHLFNAR 366 (1071)
Q Consensus 305 ~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~----------~e~A~~il~rAl~~~~~~~p~i~~~~a~ 366 (1071)
++.|++.|+.....+|.+.+.++.++..|..... +++|+.-|+.|+.+ .|+.......++.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I-~P~~hdAlw~lGn 77 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI-NPNKHDALWCLGN 77 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH--TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc-CCchHHHHHHHHH
Confidence 3457777777777888888888888776665532 35666666666665 4444333333333
No 261
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.55 E-value=0.66 Score=49.67 Aligned_cols=151 Identities=12% Similarity=0.054 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCChHH-HH
Q 001481 393 IEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKL-LL 471 (1071)
Q Consensus 393 ~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~~~P~~~~-lw 471 (1071)
+..|+.-+.-+.+.|++++|.+.|++..... ...+....+.+.++...+ ..++++.|+...++-++.+|.++. -|
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~---p~s~~~~qa~l~l~yA~Y-k~~~y~~A~~~~drFi~lyP~~~n~dY 109 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRH---PFSPYSEQAQLDLAYAYY-KNGEYDLALAYIDRFIRLYPTHPNADY 109 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCcccHHHHHHHHHHHH-hcccHHHHHHHHHHHHHhCCCCCChhH
Confidence 4456666666667788888888887776551 113345567777777776 778888888888888888887553 24
Q ss_pred HHHHHHHHHcC-------CCCchhhHHHHHHHhhccCCcccccCChhhHHH---------HHHHHHHHHHHhcCCHHHHH
Q 001481 472 EELIKFTMVHG-------GRSHISIVDAVISNALYSRPDVLKVFSLEDVED---------ISSLYLQQFLDLCGTIHDIR 535 (1071)
Q Consensus 472 ~~~~~~e~~~g-------~~~~a~~~r~l~e~Al~~~~d~~~~l~~~~~~~---------lw~~~l~~~e~~~G~~e~a~ 535 (1071)
..|+..+...- |...++.+-.-|+..|...|+. .--++-... =.+..+.+|..+.|....|.
T Consensus 110 ~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS--~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~ 187 (254)
T COG4105 110 AYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNS--RYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAI 187 (254)
T ss_pred HHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCC--cchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHH
Confidence 44444444332 2223444445566666666642 111111111 12222225666788888899
Q ss_pred HHHHHHHHhCCCCc
Q 001481 536 NAWNQHIKLFPHTV 549 (1071)
Q Consensus 536 ~~~~ra~~~~p~~~ 549 (1071)
.-++++++..|+..
T Consensus 188 nR~~~v~e~y~~t~ 201 (254)
T COG4105 188 NRFEEVLENYPDTS 201 (254)
T ss_pred HHHHHHHhcccccc
Confidence 98999998887744
No 262
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.52 E-value=0.65 Score=55.60 Aligned_cols=152 Identities=14% Similarity=0.101 Sum_probs=99.6
Q ss_pred hCCHHHHHHHHHHhhcCCCCCHH------HH-HHHHHHHHh----hCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHH
Q 001481 302 QGDFDWVVKLYERCLIPCADYPE------FW-MRYVDFMES----KGGREIASYALDRATQIFLKRLPVIHLFNARYKEQ 370 (1071)
Q Consensus 302 ~g~~~~a~~~yerAL~~~p~~~~------lW-~~ya~~l~~----~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~ 370 (1071)
.||.+....++.+|.....-... +| +.++..... ....+.|..++.+.... .|+.....+..|+++..
T Consensus 201 ~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~-yP~s~lfl~~~gR~~~~ 279 (468)
T PF10300_consen 201 SGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR-YPNSALFLFFEGRLERL 279 (468)
T ss_pred CCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHH
Confidence 58999999999998874322211 11 111211111 23467899999998886 45555556667899999
Q ss_pred hCCHHHHHHHHHHHhhccChhh----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHH-HHHHHh
Q 001481 371 IGDTSAARAAFPESYIDSDSRF----IEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQF-SRLTYT 445 (1071)
Q Consensus 371 ~g~~~~A~~~~~~al~~~~p~~----~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~-A~~~~~ 445 (1071)
.|++++|.+.|.+++ ...... .-.+..++.......++++|...|.+.++. .....-+|..+ |.++.
T Consensus 280 ~g~~~~Ai~~~~~a~-~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~------s~WSka~Y~Y~~a~c~~- 351 (468)
T PF10300_consen 280 KGNLEEAIESFERAI-ESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE------SKWSKAFYAYLAAACLL- 351 (468)
T ss_pred hcCHHHHHHHHHHhc-cchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc------cccHHHHHHHHHHHHHH-
Confidence 999999999999988 322111 122445566666789999999999999886 34444444443 44454
Q ss_pred hcCCH-------HHHHHHHHHHHh
Q 001481 446 TTGSA-------DNARDILIDGIK 462 (1071)
Q Consensus 446 ~~g~~-------e~Ar~i~e~al~ 462 (1071)
..|+. ++|.+.|.++-.
T Consensus 352 ~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 352 MLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred hhccchhhhhhHHHHHHHHHHHHH
Confidence 88888 666666666544
No 263
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=95.47 E-value=0.16 Score=53.10 Aligned_cols=100 Identities=14% Similarity=0.149 Sum_probs=83.5
Q ss_pred CcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChhHHHHHHH
Q 001481 53 DDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFK 132 (1071)
Q Consensus 53 ~~~~~a~~vyeraL~~~P~s~~lW~~~a~~e~~~~~~e~A~~lferAL~~~P~s~~lW~~y~~~~~~~~~~~e~ar~l~e 132 (1071)
..+..|...|-|++..+|+...+|..-|.-.++.++++.+..-..||+.++|+.++--..+..+.+.. ..++.+..++.
T Consensus 24 k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s-~~~~eaI~~Lq 102 (284)
T KOG4642|consen 24 KRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQS-KGYDEAIKVLQ 102 (284)
T ss_pred hhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhh-ccccHHHHHHH
Confidence 46777888999999999999999999999999999999999999999999999999888888777776 88999999999
Q ss_pred HHHHhcCCC--CCchHHHHHHHH
Q 001481 133 RALSFVGKD--YLCHTMWDKYIE 153 (1071)
Q Consensus 133 rAL~~~~~~--~~s~~lW~~yi~ 153 (1071)
||....-.. .....||.....
T Consensus 103 ra~sl~r~~~~~~~~di~~~L~~ 125 (284)
T KOG4642|consen 103 RAYSLLREQPFTFGDDIPKALRD 125 (284)
T ss_pred HHHHHHhcCCCCCcchHHHHHHH
Confidence 997654211 124577776554
No 264
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=95.40 E-value=0.58 Score=50.58 Aligned_cols=64 Identities=14% Similarity=0.041 Sum_probs=35.9
Q ss_pred HhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHH
Q 001481 370 QIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFS 440 (1071)
Q Consensus 370 ~~g~~~~A~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A 440 (1071)
+.|+.++|..+|+.|+ .++|+++.+++.++.|....+++-.|-.+|-+|+.. .|.+.++.++.+
T Consensus 128 ~~Gk~ekA~~lfeHAl-alaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALti------sP~nseALvnR~ 191 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHAL-ALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTI------SPGNSEALVNRA 191 (472)
T ss_pred hccchHHHHHHHHHHH-hcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeee------CCCchHHHhhhh
Confidence 3455555666666555 455555556666655555555555555566555555 455555544443
No 265
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=95.34 E-value=0.036 Score=39.78 Aligned_cols=34 Identities=12% Similarity=0.230 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCh
Q 001481 433 PLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNC 467 (1071)
Q Consensus 433 ~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~~~P~~ 467 (1071)
+.+|..+|.++. ..|++++|...|+++|+.+|++
T Consensus 1 a~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYF-QLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHH-HhCCchHHHHHHHHHHHHCcCC
Confidence 468999999998 9999999999999999999974
No 266
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=95.19 E-value=1.2 Score=51.28 Aligned_cols=159 Identities=13% Similarity=0.050 Sum_probs=101.6
Q ss_pred CHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhh----ccc---------------------h
Q 001481 304 DFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFL----KRL---------------------P 358 (1071)
Q Consensus 304 ~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~----~~~---------------------p 358 (1071)
|.+..+.++ ..+|.+.+..+.++.++...|+.+.|.++++||+-++. +.. -
T Consensus 25 Dp~~l~~ll----~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR 100 (360)
T PF04910_consen 25 DPNALINLL----QKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENR 100 (360)
T ss_pred CHHHHHHHH----HHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccch
Confidence 555555554 34678888888888888888877777777777754321 111 0
Q ss_pred H---HHHHHHHHHHHhCCHHHHHHHHHHHhhccChh-hHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHHHhhhccCCCcH
Q 001481 359 V---IHLFNARYKEQIGDTSAARAAFPESYIDSDSR-FIEKVTFKANM-ERRLGNFVAACDTYKEALETAAEQRKFHTLP 433 (1071)
Q Consensus 359 ~---i~~~~a~~e~~~g~~~~A~~~~~~al~~~~p~-~~~~w~~~a~l-e~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~ 433 (1071)
. +.+.+...+.+.|-+..|.++.+-.+ .++|. ++-..+.++++ ..+.+.++-.+++++......... .....|
T Consensus 101 ~fflal~r~i~~L~~RG~~rTAlE~~KlLl-sLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~-~~~~lP 178 (360)
T PF04910_consen 101 QFFLALFRYIQSLGRRGCWRTALEWCKLLL-SLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRN-WLSLLP 178 (360)
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHHH-hcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhh-hhhhCc
Confidence 1 22334556788999999999988887 67775 44444444443 345678888888888765521000 001234
Q ss_pred HHHHHHHHHHHhhcCCH---------------HHHHHHHHHHHhhCCChHH
Q 001481 434 LLYVQFSRLTYTTTGSA---------------DNARDILIDGIKHVPNCKL 469 (1071)
Q Consensus 434 ~l~~~~A~~~~~~~g~~---------------e~Ar~i~e~al~~~P~~~~ 469 (1071)
.+-+..|..++ ..++. +.|++.+.+|+..+|....
T Consensus 179 n~a~S~aLA~~-~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl~ 228 (360)
T PF04910_consen 179 NFAFSIALAYF-RLEKEESSQSSAQSGRSENSESADEALQKAILRFPWVLV 228 (360)
T ss_pred cHHHHHHHHHH-HhcCccccccccccccccchhHHHHHHHHHHHHhHHHHH
Confidence 55556666655 56665 8999999999999996443
No 267
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=95.19 E-value=25 Score=50.33 Aligned_cols=128 Identities=13% Similarity=0.062 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHH-----cCCH---HHHHHHHHHHHHHHhhhccCC
Q 001481 359 VIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERR-----LGNF---VAACDTYKEALETAAEQRKFH 430 (1071)
Q Consensus 359 ~i~~~~a~~e~~~g~~~~A~~~~~~al~~~~p~~~~~w~~~a~le~~-----~g~~---~~A~~~y~~Al~~~~~~~~~p 430 (1071)
+++...+.|..+.|+.++|...|..|+ .++-...++|..|+.+... .+++ ..|..+|-.|+...
T Consensus 2813 eff~lkG~f~~kL~~~eeAn~~fs~Av-Qi~~~l~KaW~~Wg~y~~~~f~~e~~ni~~a~~avsCyLqA~~~~------- 2884 (3550)
T KOG0889|consen 2813 EFFTLKGMFLEKLGKFEEANKAFSAAV-QIDDGLGKAWAEWGKYLDNRFNKEPVNISFACNAVSCYLQAARLY------- 2884 (3550)
T ss_pred HHHHhhhHHHHHhcCcchhHHHHHHHH-HHHhhhHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhccc-------
Confidence 455556788999999999999999998 6667788999999986443 2332 45777777777652
Q ss_pred CcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCh--HHHHHHHHHHHHHcCCCCchhhHHHHHHH
Q 001481 431 TLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNC--KLLLEELIKFTMVHGGRSHISIVDAVISN 496 (1071)
Q Consensus 431 ~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~~~P~~--~~lw~~~~~~e~~~g~~~~a~~~r~l~e~ 496 (1071)
...+..-.+|+++| .=+++.|-....++++++-.. ...|..|+--+...-+..++..++.++-+
T Consensus 2885 ~~skaRk~iakvLw--Lls~dda~~~l~~~~~k~l~~ip~~~wl~~IPQLl~sLs~~e~~~~~~iL~k 2950 (3550)
T KOG0889|consen 2885 NSSKARKLIAKVLW--LLSFDDSLGTLGDVFDKFLGEIPVWNWLYFIPQLLTSLSKKEAKLVRLILIK 2950 (3550)
T ss_pred cchhhHHHHHHHHH--HHHhccccchHHHHHHHhhccCCchhhhhhhHHHHhhccccchhHHHHHHHH
Confidence 22334444455554 223344444444555444432 34566666554443333333333444444
No 268
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.89 E-value=7.9 Score=42.99 Aligned_cols=231 Identities=15% Similarity=-0.013 Sum_probs=135.3
Q ss_pred HhCCHHHHHHHHHHhhcCC----CCC----HHHHHHHHHHHHhhC-CHHHHHHHHHHHHHHhhc------cch-------
Q 001481 301 KQGDFDWVVKLYERCLIPC----ADY----PEFWMRYVDFMESKG-GREIASYALDRATQIFLK------RLP------- 358 (1071)
Q Consensus 301 ~~g~~~~a~~~yerAL~~~----p~~----~~lW~~ya~~l~~~g-~~e~A~~il~rAl~~~~~------~~p------- 358 (1071)
+.|+++.|...|.||-... |.. ..+.|.+|+-+...+ ++++|...+++|.+++.. ..+
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~ 84 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRL 84 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHH
Confidence 4789999999999987532 222 467888888888888 999999999999997422 111
Q ss_pred HHHHHHHHHHHHhCCHH---HHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHH
Q 001481 359 VIHLFNARYKEQIGDTS---AARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLL 435 (1071)
Q Consensus 359 ~i~~~~a~~e~~~g~~~---~A~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l 435 (1071)
.+...++..+...+..+ +|..+.+-+- .-.++.+.++.....+..+.++.+++.+++.+++..+.- .....+.
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~-~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~---~e~~~~~ 160 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLE-SEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDH---SESNFDS 160 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHH-HhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhccc---ccchHHH
Confidence 24445566666655543 4555555443 234566777766677666688999999999999987320 1123344
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHhh--CCChHHHHHHHHHHH---HHcC-----CCCchhhHHHHHHHhhccCCccc
Q 001481 436 YVQFSRLTYTTTGSADNARDILIDGIKH--VPNCKLLLEELIKFT---MVHG-----GRSHISIVDAVISNALYSRPDVL 505 (1071)
Q Consensus 436 ~~~~A~~~~~~~g~~e~Ar~i~e~al~~--~P~~~~lw~~~~~~e---~~~g-----~~~~a~~~r~l~e~Al~~~~d~~ 505 (1071)
.+.....+. ..+...|..++.+.|.. .|.... |..-+-+. ...+ +.++++.+..+++.......
T Consensus 161 ~l~~i~~l~--~~~~~~a~~~ld~~l~~r~~~~~~~-~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~--- 234 (278)
T PF08631_consen 161 ILHHIKQLA--EKSPELAAFCLDYLLLNRFKSSEDQ-WLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLG--- 234 (278)
T ss_pred HHHHHHHHH--hhCcHHHHHHHHHHHHHHhCCChhH-HHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhc---
Confidence 444443333 33445566666665543 232222 43322221 1111 12224445555553222111
Q ss_pred ccCChhhH----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001481 506 KVFSLEDV----EDISSLYLQQFLDLCGTIHDIRNAWNQHIK 543 (1071)
Q Consensus 506 ~~l~~~~~----~~lw~~~l~~~e~~~G~~e~a~~~~~ra~~ 543 (1071)
..++.+.. .-||...- -....+++..|...|+-+++
T Consensus 235 ~~ls~~~~~a~~~LLW~~~~--~~~~~k~y~~A~~w~~~al~ 274 (278)
T PF08631_consen 235 KQLSAEAASAIHTLLWNKGK--KHYKAKNYDEAIEWYELALH 274 (278)
T ss_pred CCCCHHHHHHHHHHHHHHHH--HHHhhcCHHHHHHHHHHHHH
Confidence 24444432 23565543 44567899999999886664
No 269
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=94.84 E-value=0.036 Score=63.62 Aligned_cols=100 Identities=16% Similarity=0.023 Sum_probs=84.8
Q ss_pred HhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhhcCC
Q 001481 370 QIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGS 449 (1071)
Q Consensus 370 ~~g~~~~A~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~g~ 449 (1071)
.-+.|+.|..+|.+|| +++|+++.+|-..+....+.+++-.|..=+.+||++ .|...++|+..|.... ..+.
T Consensus 16 ~~~~fd~avdlysKaI-~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~------dP~~~K~Y~rrg~a~m-~l~~ 87 (476)
T KOG0376|consen 16 KDKVFDVAVDLYSKAI-ELDPNCAIYFANRALAHLKVESFGGALHDALKAIEL------DPTYIKAYVRRGTAVM-ALGE 87 (476)
T ss_pred ccchHHHHHHHHHHHH-hcCCcceeeechhhhhheeechhhhHHHHHHhhhhc------CchhhheeeeccHHHH-hHHH
Confidence 4567889999999999 789988888888887788889999999999999998 7888899988888876 8899
Q ss_pred HHHHHHHHHHHHhhCCChHHHHHHHHHH
Q 001481 450 ADNARDILIDGIKHVPNCKLLLEELIKF 477 (1071)
Q Consensus 450 ~e~Ar~i~e~al~~~P~~~~lw~~~~~~ 477 (1071)
+.+|+..|+.+.+..|+.+.+-..+-+.
T Consensus 88 ~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 88 FKKALLDLEKVKKLAPNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHHHhhhcCcCcHHHHHHHHHH
Confidence 9999999999999999888765555444
No 270
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=94.29 E-value=19 Score=44.89 Aligned_cols=157 Identities=17% Similarity=0.132 Sum_probs=99.6
Q ss_pred HHHHhCC---HHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHH
Q 001481 367 YKEQIGD---TSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLT 443 (1071)
Q Consensus 367 ~e~~~g~---~~~A~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~ 443 (1071)
...+.++ +-+|+.+++..+ ...|++...-+.++.++.-.|-+..|.++|+.. +. +. .-.+.--|+.+-+++
T Consensus 445 ~~rktnd~~~l~eaI~LLE~gl-t~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tL-dI---K~-IQ~DTlgh~~~~~~~ 518 (932)
T KOG2053|consen 445 LWRKTNDLTDLFEAITLLENGL-TKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTL-DI---KN-IQTDTLGHLIFRRAE 518 (932)
T ss_pred HHHhcCcHHHHHHHHHHHHHHh-hcCCccHHHHHHHHHHHHHhcCChhHHHHHHhc-ch---HH-hhhccchHHHHHHHH
Confidence 3445554 447888888888 667888877777788888889999999999754 22 00 122233344443443
Q ss_pred HhhcCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCCCchhhHHHHHHHhhccCCcccccCChhhHHHHHHHHHHH
Q 001481 444 YTTTGSADNARDILIDGIKHVPNCKLLLEELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQQ 523 (1071)
Q Consensus 444 ~~~~g~~e~Ar~i~e~al~~~P~~~~lw~~~~~~e~~~g~~~~a~~~r~l~e~Al~~~~d~~~~l~~~~~~~lw~~~l~~ 523 (1071)
..|.+..|+..|...++.+.++-.=-..|+.+..++|.+.++..++..-+|.-... -.....+=..++ .
T Consensus 519 --t~g~~~~~s~~~~~~lkfy~~~~kE~~eyI~~AYr~g~ySkI~em~~fr~rL~~S~--------q~~a~~VE~~~l-~ 587 (932)
T KOG2053|consen 519 --TSGRSSFASNTFNEHLKFYDSSLKETPEYIALAYRRGAYSKIPEMLAFRDRLMHSL--------QKWACRVENLQL-S 587 (932)
T ss_pred --hcccchhHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCchhhhHHHHHHHHHHHHHH--------HHHHHHHHHHHH-H
Confidence 58899999999999999888776556668888888898887654433322211000 012223334445 5
Q ss_pred HHHhcCCHHHHHHHHHH
Q 001481 524 FLDLCGTIHDIRNAWNQ 540 (1071)
Q Consensus 524 ~e~~~G~~e~a~~~~~r 540 (1071)
+.-.+++......+++-
T Consensus 588 ll~~~~~~~q~~~~~~~ 604 (932)
T KOG2053|consen 588 LLCNADRGTQLLKLLES 604 (932)
T ss_pred HHHhCCcHHHHHHHHhc
Confidence 55667777776666543
No 271
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.10 E-value=2.2 Score=46.89 Aligned_cols=121 Identities=10% Similarity=-0.000 Sum_probs=63.2
Q ss_pred HHHhhCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhCCHHHHHHHHHHHhhccChh---hHHHHHHHHHHHHHcCC
Q 001481 332 FMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSR---FIEKVTFKANMERRLGN 408 (1071)
Q Consensus 332 ~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~~A~~~~~~al~~~~p~---~~~~w~~~a~le~~~g~ 408 (1071)
.++-.|++-+|...+++.+.- .|.+-..|.+--+...-+|+.+--+..+++.+..-+++ +.-+.-.|+--+.+.|-
T Consensus 112 i~~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 112 ILWGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred HhhccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhcc
Confidence 345556666666666666654 12111222222333445666666666666665221222 22233334444556677
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 001481 409 FVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDG 460 (1071)
Q Consensus 409 ~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~a 460 (1071)
+++|.+.-++|+.+ .+.+.=+.-..|.+++ ..|+.+++.+...+-
T Consensus 191 y~dAEk~A~ralqi------N~~D~Wa~Ha~aHVle-m~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 191 YDDAEKQADRALQI------NRFDCWASHAKAHVLE-MNGRHKEGKEFMYKT 235 (491)
T ss_pred chhHHHHHHhhccC------CCcchHHHHHHHHHHH-hcchhhhHHHHHHhc
Confidence 77777777777766 3333333344455555 666777776665554
No 272
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.07 E-value=0.4 Score=54.91 Aligned_cols=124 Identities=13% Similarity=0.076 Sum_probs=92.7
Q ss_pred cchHHHHHHHHHHHHhCCHHHHHHHHHHHhhccChh--------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhc
Q 001481 356 RLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSR--------FIEKVTFKANMERRLGNFVAACDTYKEALETAAEQR 427 (1071)
Q Consensus 356 ~~p~i~~~~a~~e~~~g~~~~A~~~~~~al~~~~p~--------~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~ 427 (1071)
+.+...+..+.+|...|++-+|.+++...-.+..++ .--.|.+++-+..+.|.+..+..+|.+|+......-
T Consensus 238 ~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL 317 (696)
T KOG2471|consen 238 DSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQL 317 (696)
T ss_pred CCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHH
Confidence 455667777889999999999998877652233332 123467777788888999999999999996332110
Q ss_pred c------------CCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHH
Q 001481 428 K------------FHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLLLEELIKFTMV 480 (1071)
Q Consensus 428 ~------------~p~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~~~P~~~~lw~~~~~~e~~ 480 (1071)
. .....++.++.|..+. ..|+.-.|+++|.+++..+-.++.+|+.+++.-+.
T Consensus 318 ~~g~~~~~~~tls~nks~eilYNcG~~~L-h~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 318 RNGLKPAKTFTLSQNKSMEILYNCGLLYL-HSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIM 381 (696)
T ss_pred hccCCCCcceehhcccchhhHHhhhHHHH-hcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 0 1123457778888887 99999999999999999999999999999887543
No 273
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.97 E-value=1.1 Score=53.62 Aligned_cols=120 Identities=15% Similarity=0.018 Sum_probs=89.4
Q ss_pred hCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhccch----HHHHHHHHHHHHhCCHHHH
Q 001481 302 QGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLP----VIHLFNARYKEQIGDTSAA 377 (1071)
Q Consensus 302 ~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p----~i~~~~a~~e~~~g~~~~A 377 (1071)
..+.+.+..++++.+...|+..-+.+..|+++...|++++|+..|++|+.. ....+ .+++..+.+.....++++|
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~-q~~~~Ql~~l~~~El~w~~~~~~~w~~A 324 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIES-QSEWKQLHHLCYFELAWCHMFQHDWEEA 324 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccc-hhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence 346788999999999999998888888899999999999999999999853 11122 2445567777889999999
Q ss_pred HHHHHHHhhccChhhHHHHHHH--HHHHHHcCCH-------HHHHHHHHHHHHHHh
Q 001481 378 RAAFPESYIDSDSRFIEKVTFK--ANMERRLGNF-------VAACDTYKEALETAA 424 (1071)
Q Consensus 378 ~~~~~~al~~~~p~~~~~w~~~--a~le~~~g~~-------~~A~~~y~~Al~~~~ 424 (1071)
...|.+.+++ ..- .++++.| |-++...|+. ++|..+|+++-....
T Consensus 325 ~~~f~~L~~~-s~W-Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~ 378 (468)
T PF10300_consen 325 AEYFLRLLKE-SKW-SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQ 378 (468)
T ss_pred HHHHHHHHhc-ccc-HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence 9999999843 222 2344444 4466667777 777777777766643
No 274
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=93.96 E-value=1.3 Score=52.37 Aligned_cols=51 Identities=10% Similarity=0.031 Sum_probs=34.2
Q ss_pred HHHHhhCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhCCHHHHHHHHHHHh
Q 001481 331 DFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESY 385 (1071)
Q Consensus 331 ~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~~A~~~~~~al 385 (1071)
.+....+++++|..+.++--+. .+.+++-||.++.+..+|++|-+.|.+|-
T Consensus 781 qlHve~~~W~eAFalAe~hPe~----~~dVy~pyaqwLAE~DrFeEAqkAfhkAG 831 (1081)
T KOG1538|consen 781 QLHVETQRWDEAFALAEKHPEF----KDDVYMPYAQWLAENDRFEEAQKAFHKAG 831 (1081)
T ss_pred hheeecccchHhHhhhhhCccc----cccccchHHHHhhhhhhHHHHHHHHHHhc
Confidence 3444556677776666554332 56778888888888888888887777763
No 275
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.92 E-value=3.3 Score=44.32 Aligned_cols=164 Identities=11% Similarity=-0.019 Sum_probs=106.6
Q ss_pred HHHHHHHHHhcccCcCCCCCChhHHHHHHHHHHHHHHhC-CHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCHH-HH
Q 001481 265 EKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQG-DFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGRE-IA 342 (1071)
Q Consensus 265 ~~~~~fE~ai~~~~~~~~~~~p~~~~~W~~y~~~~~~~g-~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e-~A 342 (1071)
+++...+.+|+ ++|.+..+|.-.-..+...+ +..+=.+.+++.+..+|++..+|...-.+.+..|+.. .-
T Consensus 61 RAl~LT~d~i~--------lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rE 132 (318)
T KOG0530|consen 61 RALQLTEDAIR--------LNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRE 132 (318)
T ss_pred HHHHHHHHHHH--------hCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccch
Confidence 34444455554 68889999987777666554 5667778888889999999999999988888888765 55
Q ss_pred HHHHHHHHHHhhccchHHHHHHHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHH-HcCC-----HHHHHHHH
Q 001481 343 SYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMER-RLGN-----FVAACDTY 416 (1071)
Q Consensus 343 ~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~~A~~~~~~al~~~~p~~~~~w~~~a~le~-~~g~-----~~~A~~~y 416 (1071)
+++.++++..-.++ =-+|...-.+...-+.++.-+......++ .+-.+-.+|....-+.. ..|- ++.-..+-
T Consensus 133 Lef~~~~l~~DaKN-YHaWshRqW~~r~F~~~~~EL~y~~~Lle-~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt 210 (318)
T KOG0530|consen 133 LEFTKLMLDDDAKN-YHAWSHRQWVLRFFKDYEDELAYADELLE-EDIRNNSAWNQRYFVITNTKGVISKAELERELNYT 210 (318)
T ss_pred HHHHHHHHhccccc-hhhhHHHHHHHHHHhhHHHHHHHHHHHHH-HhhhccchhheeeEEEEeccCCccHHHHHHHHHHH
Confidence 67777777641111 12454444555556678887777777773 23333334543321111 1222 23445566
Q ss_pred HHHHHHHhhhccCCCcHHHHHHHHHHHH
Q 001481 417 KEALETAAEQRKFHTLPLLYVQFSRLTY 444 (1071)
Q Consensus 417 ~~Al~~~~~~~~~p~~~~l~~~~A~~~~ 444 (1071)
.+.|.. .|.+..+|..+..++.
T Consensus 211 ~~~I~~------vP~NeSaWnYL~G~l~ 232 (318)
T KOG0530|consen 211 KDKILL------VPNNESAWNYLKGLLE 232 (318)
T ss_pred HHHHHh------CCCCccHHHHHHHHHH
Confidence 777777 6888889988887776
No 276
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.85 E-value=0.15 Score=36.27 Aligned_cols=33 Identities=18% Similarity=0.338 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhcCCC
Q 001481 74 GYWRKYADHKARLCSIDKVVEVFERAVQSATYS 106 (1071)
Q Consensus 74 ~lW~~~a~~e~~~~~~e~A~~lferAL~~~P~s 106 (1071)
+.|..++......+++++|++.|++|+..+|.+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 467777777777777777777777777777653
No 277
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=93.75 E-value=0.1 Score=37.30 Aligned_cols=32 Identities=13% Similarity=0.273 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCC
Q 001481 434 LLYVQFSRLTYTTTGSADNARDILIDGIKHVPN 466 (1071)
Q Consensus 434 ~l~~~~A~~~~~~~g~~e~Ar~i~e~al~~~P~ 466 (1071)
++|+.+|.++. ..|++++|.+.|+++++..|+
T Consensus 2 ~~~~~lg~~y~-~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYE-QLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHH-HTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCC
Confidence 57899999998 999999999999999999884
No 278
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.75 E-value=7.3 Score=40.13 Aligned_cols=93 Identities=16% Similarity=0.064 Sum_probs=71.9
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHhhccc----hHHHHHHHHHHHHhCCHHHHHHHHHHHhhccChh-hHHHHHHH
Q 001481 325 FWMRYVDFMESKGGREIASYALDRATQIFLKRL----PVIHLFNARYKEQIGDTSAARAAFPESYIDSDSR-FIEKVTFK 399 (1071)
Q Consensus 325 lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~----p~i~~~~a~~e~~~g~~~~A~~~~~~al~~~~p~-~~~~w~~~ 399 (1071)
.-+.+++.+.+.|++++|...++.++.. +.+ +.+-+.++++....|.+|+|+.+++..-+ ++ ...+-...
T Consensus 91 aaL~lAk~~ve~~~~d~A~aqL~~~l~~--t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~---~~w~~~~~elr 165 (207)
T COG2976 91 AALELAKAEVEANNLDKAEAQLKQALAQ--TKDENLKALAALRLARVQLQQKKADAALKTLDTIKE---ESWAAIVAELR 165 (207)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHcc--chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc---ccHHHHHHHHh
Confidence 3456677788889999999999998863 222 23566678889999999999999886542 22 23345567
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Q 001481 400 ANMERRLGNFVAACDTYKEALET 422 (1071)
Q Consensus 400 a~le~~~g~~~~A~~~y~~Al~~ 422 (1071)
++++...|+-++||+.|++|+..
T Consensus 166 GDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 166 GDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred hhHHHHcCchHHHHHHHHHHHHc
Confidence 88999999999999999999997
No 279
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.71 E-value=0.82 Score=48.15 Aligned_cols=73 Identities=8% Similarity=0.009 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCChHHHHH
Q 001481 393 IEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLLLE 472 (1071)
Q Consensus 393 ~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~~~P~~~~lw~ 472 (1071)
..++++|+.+....|++-++++.....+.. .+.+.++|+..|.... ..=+..+|+.-|.++|+..|.-.....
T Consensus 230 tpLllNy~QC~L~~~e~yevleh~seiL~~------~~~nvKA~frRakAha-a~Wn~~eA~~D~~~vL~ldpslasvVs 302 (329)
T KOG0545|consen 230 TPLLLNYCQCLLKKEEYYEVLEHCSEILRH------HPGNVKAYFRRAKAHA-AVWNEAEAKADLQKVLELDPSLASVVS 302 (329)
T ss_pred hHHHHhHHHHHhhHHHHHHHHHHHHHHHhc------CCchHHHHHHHHHHHH-hhcCHHHHHHHHHHHHhcChhhHHHHH
Confidence 345777777777778888888888888777 7888888888888766 666788888889999888887555443
No 280
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.68 E-value=2.3 Score=43.69 Aligned_cols=97 Identities=15% Similarity=0.150 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHhhcCCCC---CHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhccch-----HH
Q 001481 289 LKNWHDYLSFAEKQGDFDWVVKLYERCLIPCAD---YPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLP-----VI 360 (1071)
Q Consensus 289 ~~~W~~y~~~~~~~g~~~~a~~~yerAL~~~p~---~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p-----~i 360 (1071)
...|..+++++.+.|+.+.|.+.|.++...|.. ..++|+..+.+....+++..+...+.+|-.......+ .+
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 367889999999999999999999999887643 3578888888888889999999888888876333222 12
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHh
Q 001481 361 HLFNARYKEQIGDTSAARAAFPESY 385 (1071)
Q Consensus 361 ~~~~a~~e~~~g~~~~A~~~~~~al 385 (1071)
....|.+....++|.+|-..|-.++
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHccC
Confidence 2233344455677777777766554
No 281
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.67 E-value=1.6 Score=47.58 Aligned_cols=118 Identities=17% Similarity=0.102 Sum_probs=88.1
Q ss_pred HhCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhccchHHH--HHHHHHHHHhCCHHHHH
Q 001481 301 KQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIH--LFNARYKEQIGDTSAAR 378 (1071)
Q Consensus 301 ~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~--~~~a~~e~~~g~~~~A~ 378 (1071)
..|++..+..+|..++...|...++-+.|+..+...|+.+.|..+|...=.- . ...... .....++.+.....+..
T Consensus 146 ~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-~-~~~~~~~l~a~i~ll~qaa~~~~~~ 223 (304)
T COG3118 146 EAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQ-A-QDKAAHGLQAQIELLEQAAATPEIQ 223 (304)
T ss_pred hccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCccc-c-hhhHHHHHHHHHHHHHHHhcCCCHH
Confidence 5788999999999999999999999999999999999999999988652111 0 011111 12345666655555544
Q ss_pred HHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001481 379 AAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALET 422 (1071)
Q Consensus 379 ~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~ 422 (1071)
.+-.++ ..+|++..+-+.++..+.-.|+.++|.+.+-..+..
T Consensus 224 ~l~~~~--aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 224 DLQRRL--AADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred HHHHHH--HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 444444 348999999999999999999999988877666655
No 282
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.62 E-value=1.7 Score=45.89 Aligned_cols=70 Identities=11% Similarity=-0.016 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHH
Q 001481 360 IHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLY 436 (1071)
Q Consensus 360 i~~~~a~~e~~~g~~~~A~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~ 436 (1071)
+++.|+.++...|++-++++.....+ ...|++.++++..+......=+.++|++-|.+++++ +|....+.
T Consensus 232 LllNy~QC~L~~~e~yevleh~seiL-~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l------dpslasvV 301 (329)
T KOG0545|consen 232 LLLNYCQCLLKKEEYYEVLEHCSEIL-RHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL------DPSLASVV 301 (329)
T ss_pred HHHhHHHHHhhHHHHHHHHHHHHHHH-hcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc------ChhhHHHH
Confidence 67778888888999999999888888 678899999999998888778899999999999998 66655444
No 283
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.59 E-value=1.7 Score=44.58 Aligned_cols=99 Identities=12% Similarity=0.051 Sum_probs=69.8
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHhhccChhhHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHH
Q 001481 362 LFNARYKEQIGDTSAARAAFPESYIDSDSRFIE--KVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQF 439 (1071)
Q Consensus 362 ~~~a~~e~~~g~~~~A~~~~~~al~~~~p~~~~--~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~ 439 (1071)
+..|..+...+++++|...+..++....-.... +-++++.+....|.+|+|.++++...+ ....+.+....
T Consensus 93 L~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~-------~~w~~~~~elr 165 (207)
T COG2976 93 LELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE-------ESWAAIVAELR 165 (207)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc-------ccHHHHHHHHh
Confidence 344556677899999999999988322112222 244667777777888888877664332 23344556677
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHhhCCChH
Q 001481 440 SRLTYTTTGSADNARDILIDGIKHVPNCK 468 (1071)
Q Consensus 440 A~~~~~~~g~~e~Ar~i~e~al~~~P~~~ 468 (1071)
|.++. ..|+-++||+.|++|+...+...
T Consensus 166 GDill-~kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 166 GDILL-AKGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred hhHHH-HcCchHHHHHHHHHHHHccCChH
Confidence 88988 99999999999999999875443
No 284
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=93.37 E-value=0.22 Score=53.65 Aligned_cols=61 Identities=15% Similarity=0.220 Sum_probs=55.7
Q ss_pred HHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCChHHH
Q 001481 403 ERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLL 470 (1071)
Q Consensus 403 e~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~~~P~~~~l 470 (1071)
.++.|+.++|..+|+.|+++ .|.++.+.+.+|.|.+ ..+++-+|-.+|-+||...|.+.+.
T Consensus 126 ~~~~Gk~ekA~~lfeHAlal------aP~~p~~L~e~G~f~E-~~~~iv~ADq~Y~~ALtisP~nseA 186 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALAL------APTNPQILIEMGQFRE-MHNEIVEADQCYVKALTISPGNSEA 186 (472)
T ss_pred HHhccchHHHHHHHHHHHhc------CCCCHHHHHHHhHHHH-hhhhhHhhhhhhheeeeeCCCchHH
Confidence 46779999999999999999 8999999999999998 7799999999999999999986543
No 285
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=93.07 E-value=0.15 Score=36.01 Aligned_cols=32 Identities=25% Similarity=0.363 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCh
Q 001481 435 LYVQFSRLTYTTTGSADNARDILIDGIKHVPNC 467 (1071)
Q Consensus 435 l~~~~A~~~~~~~g~~e~Ar~i~e~al~~~P~~ 467 (1071)
+++.+|.++. ..|++++|+++|++.++.+|++
T Consensus 2 a~~~~a~~~~-~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYY-KLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHH-HHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHH-HccCHHHHHHHHHHHHHHCcCC
Confidence 5677888888 8999999999999999999975
No 286
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=93.02 E-value=1.4 Score=48.62 Aligned_cols=97 Identities=15% Similarity=0.061 Sum_probs=68.0
Q ss_pred HHHHHHhCCHHHHHHHHHHHhhccC--hh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHH
Q 001481 365 ARYKEQIGDTSAARAAFPESYIDSD--SR-FIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSR 441 (1071)
Q Consensus 365 a~~e~~~g~~~~A~~~~~~al~~~~--p~-~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~ 441 (1071)
+..+.+..+|..|+..|.++|+... |+ ++-+|.+.+......||+-.|+.-..+|+.. .|+..++|+.-|.
T Consensus 88 GN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~------~P~h~Ka~~R~Ak 161 (390)
T KOG0551|consen 88 GNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL------KPTHLKAYIRGAK 161 (390)
T ss_pred hHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc------CcchhhhhhhhhH
Confidence 3444556677777777777774322 22 2344667777777778888888888888887 7888888888888
Q ss_pred HHHhhcCCHHHHHHHHHHHHhhCCChH
Q 001481 442 LTYTTTGSADNARDILIDGIKHVPNCK 468 (1071)
Q Consensus 442 ~~~~~~g~~e~Ar~i~e~al~~~P~~~ 468 (1071)
++. .++.++.|....+.++..+-...
T Consensus 162 c~~-eLe~~~~a~nw~ee~~~~d~e~K 187 (390)
T KOG0551|consen 162 CLL-ELERFAEAVNWCEEGLQIDDEAK 187 (390)
T ss_pred HHH-HHHHHHHHHHHHhhhhhhhHHHH
Confidence 877 78888888888888876554433
No 287
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.80 E-value=1 Score=46.37 Aligned_cols=106 Identities=12% Similarity=0.049 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHhhccC--hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHH
Q 001481 359 VIHLFNARYKEQIGDTSAARAAFPESYIDSD--SRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLY 436 (1071)
Q Consensus 359 ~i~~~~a~~e~~~g~~~~A~~~~~~al~~~~--p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~ 436 (1071)
..+...+.++.+.|++++|++.|.++.+.+. ....++++..+.+....|++..+.....+|-..+..........++-
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 3555667777777777777777777764331 23466777777777777888888888888777643211000111222
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHhhCC
Q 001481 437 VQFSRLTYTTTGSADNARDILIDGIKHVP 465 (1071)
Q Consensus 437 ~~~A~~~~~~~g~~e~Ar~i~e~al~~~P 465 (1071)
+.-|.... ..+++.+|-..|-.++.-+.
T Consensus 117 ~~~gL~~l-~~r~f~~AA~~fl~~~~t~~ 144 (177)
T PF10602_consen 117 VYEGLANL-AQRDFKEAAELFLDSLSTFT 144 (177)
T ss_pred HHHHHHHH-HhchHHHHHHHHHccCcCCC
Confidence 33333333 67889999888887765554
No 288
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=92.34 E-value=0.34 Score=34.62 Aligned_cols=29 Identities=31% Similarity=0.350 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001481 394 EKVTFKANMERRLGNFVAACDTYKEALET 422 (1071)
Q Consensus 394 ~~w~~~a~le~~~g~~~~A~~~y~~Al~~ 422 (1071)
++|+..|.++...|++++|+..|++|+++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 56777777777888888888888888877
No 289
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.30 E-value=0.12 Score=56.85 Aligned_cols=118 Identities=14% Similarity=0.096 Sum_probs=89.7
Q ss_pred HhCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhCCHHHHHHH
Q 001481 301 KQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAA 380 (1071)
Q Consensus 301 ~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~~A~~~ 380 (1071)
..|.++.|+++|.+||..+|....++...+.++.+..+...|+.-|+.|+++ .++...-+-+.+.....+|++++|...
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei-n~Dsa~~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI-NPDSAKGYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhcc-CcccccccchhhHHHHHhhchHHHHHH
Confidence 4678999999999999999999999999999999999999999999999987 444444455555666678999999999
Q ss_pred HHHHhhccC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001481 381 FPESYIDSD-SRFIEKVTFKANMERRLGNFVAACDTYKEALET 422 (1071)
Q Consensus 381 ~~~al~~~~-p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~ 422 (1071)
|..+++ ++ -.-...|++-. .-..+.+++-+..|+++.+.
T Consensus 205 l~~a~k-ld~dE~~~a~lKeV--~p~a~ki~e~~~k~er~~~e 244 (377)
T KOG1308|consen 205 LALACK-LDYDEANSATLKEV--FPNAGKIEEHRRKYERAREE 244 (377)
T ss_pred HHHHHh-ccccHHHHHHHHHh--ccchhhhhhchhHHHHHHHH
Confidence 999873 32 12233444432 33446667777777777765
No 290
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.18 E-value=0.12 Score=56.76 Aligned_cols=96 Identities=15% Similarity=-0.019 Sum_probs=70.3
Q ss_pred HhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhhcCC
Q 001481 370 QIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGS 449 (1071)
Q Consensus 370 ~~g~~~~A~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~g~ 449 (1071)
..|.+++|++.|.++| .++|....++...+....+++....|++-|..|+++ .+....-|-..+.... .+|+
T Consensus 126 n~G~~~~ai~~~t~ai-~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei------n~Dsa~~ykfrg~A~r-llg~ 197 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAI-ELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI------NPDSAKGYKFRGYAER-LLGN 197 (377)
T ss_pred cCcchhhhhccccccc-ccCCchhhhcccccceeeeccCCchhhhhhhhhhcc------CcccccccchhhHHHH-Hhhc
Confidence 3567888888888888 677877777888888777888888888888888887 5555665555555554 6788
Q ss_pred HHHHHHHHHHHHhhCCC-hHHHHHH
Q 001481 450 ADNARDILIDGIKHVPN-CKLLLEE 473 (1071)
Q Consensus 450 ~e~Ar~i~e~al~~~P~-~~~lw~~ 473 (1071)
+++|+..|+.++++.-+ ....|+.
T Consensus 198 ~e~aa~dl~~a~kld~dE~~~a~lK 222 (377)
T KOG1308|consen 198 WEEAAHDLALACKLDYDEANSATLK 222 (377)
T ss_pred hHHHHHHHHHHHhccccHHHHHHHH
Confidence 88888888888887554 4445553
No 291
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=92.12 E-value=28 Score=40.41 Aligned_cols=135 Identities=10% Similarity=-0.027 Sum_probs=76.0
Q ss_pred HHHHHHHHhhCC-HHHHHHHHHHHHHHhhccc---hHHHHH-----HHHHHHHhCCHHHHHHHHHHHhhc--cCh---hh
Q 001481 327 MRYVDFMESKGG-REIASYALDRATQIFLKRL---PVIHLF-----NARYKEQIGDTSAARAAFPESYID--SDS---RF 392 (1071)
Q Consensus 327 ~~ya~~l~~~g~-~e~A~~il~rAl~~~~~~~---p~i~~~-----~a~~e~~~g~~~~A~~~~~~al~~--~~p---~~ 392 (1071)
+.-|+-+|+.|. -+.|.++++.++.. .+.+ .++-+. |...+. ...+.+-..+ +..+++ +.| ..
T Consensus 383 ~~~Ak~lW~~g~~dekalnLLk~il~f-t~yD~ec~n~v~~fvKq~Y~qaLs-~~~~~rLlkL-e~fi~e~gl~~i~i~e 459 (549)
T PF07079_consen 383 VFGAKHLWEIGQCDEKALNLLKLILQF-TNYDIECENIVFLFVKQAYKQALS-MHAIPRLLKL-EDFITEVGLTPITISE 459 (549)
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHh-ccccHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHH-HHHHHhcCCCcccccH
Confidence 344667888887 67788888776653 3322 121111 111111 1112221111 112211 112 22
Q ss_pred HHH--HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCChHHH
Q 001481 393 IEK--VTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLL 470 (1071)
Q Consensus 393 ~~~--w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~~~P~~~~l 470 (1071)
.++ .+.-|.++...|++.++.-.-.=..+. .| .+.+|--+|.++. ..+++++|..++.. -|.+.++
T Consensus 460 ~eian~LaDAEyLysqgey~kc~~ys~WL~~i------aP-S~~~~RLlGl~l~-e~k~Y~eA~~~l~~----LP~n~~~ 527 (549)
T PF07079_consen 460 EEIANFLADAEYLYSQGEYHKCYLYSSWLTKI------AP-SPQAYRLLGLCLM-ENKRYQEAWEYLQK----LPPNERM 527 (549)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh------CC-cHHHHHHHHHHHH-HHhhHHHHHHHHHh----CCCchhh
Confidence 223 444455677789998877554444444 56 7899999999998 89999999888754 3667777
Q ss_pred HHHHHH
Q 001481 471 LEELIK 476 (1071)
Q Consensus 471 w~~~~~ 476 (1071)
|..-+.
T Consensus 528 ~dskvq 533 (549)
T PF07079_consen 528 RDSKVQ 533 (549)
T ss_pred HHHHHH
Confidence 765443
No 292
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=91.99 E-value=10 Score=44.26 Aligned_cols=130 Identities=14% Similarity=-0.003 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhcc--chHHHHHHHHHH
Q 001481 291 NWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKR--LPVIHLFNARYK 368 (1071)
Q Consensus 291 ~W~~y~~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~--~p~i~~~~a~~e 368 (1071)
.+..++..+... ..+....+.+|.++.|-++..+--.++.+|+. ++...+...|.+|+..+.|+ +..+.-.|+.+-
T Consensus 101 al~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~ 178 (711)
T COG1747 101 ALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLP 178 (711)
T ss_pred HHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHH
Confidence 345555555555 45667778888888888888888889998887 77889999999999887663 234555555554
Q ss_pred HH-hCCHHHHHHHHHHHhhccChhhHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHH
Q 001481 369 EQ-IGDTSAARAAFPESYIDSDSRFIEKVTFKA-NMERRLGNFVAACDTYKEALET 422 (1071)
Q Consensus 369 ~~-~g~~~~A~~~~~~al~~~~p~~~~~w~~~a-~le~~~g~~~~A~~~y~~Al~~ 422 (1071)
+. -.+.|.-..+..+.-....-+...+.+... .-+....++++|+++....++.
T Consensus 179 ~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 179 ELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEH 234 (711)
T ss_pred HhccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhh
Confidence 43 345666666655543222334445555554 3344567899999999987776
No 293
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=91.92 E-value=7.5 Score=43.19 Aligned_cols=103 Identities=6% Similarity=-0.084 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHhh-h---ccCCC----cHHHHHHHHHHHHhhc---CCHHHHHHHHHHH
Q 001481 393 IEKVTFKANMERRLG-NFVAACDTYKEALETAAE-Q---RKFHT----LPLLYVQFSRLTYTTT---GSADNARDILIDG 460 (1071)
Q Consensus 393 ~~~w~~~a~le~~~g-~~~~A~~~y~~Al~~~~~-~---~~~p~----~~~l~~~~A~~~~~~~---g~~e~Ar~i~e~a 460 (1071)
.++++..+.-....+ +++.|...+++|.+.+.. . ...+. ...+...++.++. .. .++++|..+.+.+
T Consensus 35 a~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l-~~~~~~~~~ka~~~l~~l 113 (278)
T PF08631_consen 35 ARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYL-EWDTYESVEKALNALRLL 113 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHH-cCCChHHHHHHHHHHHHH
Confidence 344555555555555 667777777777666422 1 11111 1223444555544 33 3456777777778
Q ss_pred HhhCCChHHHHHHHHHHHHHcCCCCchhhHHHHHHHhhc
Q 001481 461 IKHVPNCKLLLEELIKFTMVHGGRSHISIVDAVISNALY 499 (1071)
Q Consensus 461 l~~~P~~~~lw~~~~~~e~~~g~~~~a~~~r~l~e~Al~ 499 (1071)
-..+|+.+.++...+++..+.++.+.+ .+++.+++.
T Consensus 114 ~~e~~~~~~~~~L~l~il~~~~~~~~~---~~~L~~mi~ 149 (278)
T PF08631_consen 114 ESEYGNKPEVFLLKLEILLKSFDEEEY---EEILMRMIR 149 (278)
T ss_pred HHhCCCCcHHHHHHHHHHhccCChhHH---HHHHHHHHH
Confidence 777888777777777777665555444 477777775
No 294
>PF11498 Activator_LAG-3: Transcriptional activator LAG-3; InterPro: IPR021587 The C.elegans Notch pathway, involved in the control of growth, differentiation and patterning in animal development, relies on either of the receptors GLP-1 or LIN-12 []. Both these receptors promote signalling by the recruitment of LAG-3 to target promoters, where it then acts as a transcriptional activator. LAG-3 works as a ternary complex together with the DNA binding protein, LAG-1 []. ; PDB: 2FO1_D.
Probab=91.88 E-value=0.047 Score=59.05 Aligned_cols=9 Identities=33% Similarity=0.634 Sum_probs=0.0
Q ss_pred cccccccCC
Q 001481 767 SVLGASQNN 775 (1071)
Q Consensus 767 ~~~~~~~~~ 775 (1071)
+|||.-|.+
T Consensus 268 TvLgpDtYD 276 (468)
T PF11498_consen 268 TVLGPDTYD 276 (468)
T ss_dssp ---------
T ss_pred cccCccchH
Confidence 344443333
No 295
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=91.81 E-value=24 Score=40.29 Aligned_cols=129 Identities=9% Similarity=0.026 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHhh--cc--ChhhHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcH
Q 001481 359 VIHLFNARYKEQIGDTSAARAAFPESYI--DS--DSRFIEKVT-FKANMERRLGNFVAACDTYKEALETAAEQRKFHTLP 433 (1071)
Q Consensus 359 ~i~~~~a~~e~~~g~~~~A~~~~~~al~--~~--~p~~~~~w~-~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~ 433 (1071)
.+|+.+...++..|+...-+..+...+. .+ +.....+.+ -+.+.+.-.+-++.|.++-.+..- +........+
T Consensus 170 k~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~--pe~~snne~A 247 (493)
T KOG2581|consen 170 KLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVY--PEAASNNEWA 247 (493)
T ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccC--ccccccHHHH
Confidence 5677777777888888777777665542 11 111111222 222333334455666555444320 0000011223
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCChH--------HHHHHHHHHHHHcCCCCchhhHHHHHHH
Q 001481 434 LLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCK--------LLLEELIKFTMVHGGRSHISIVDAVISN 496 (1071)
Q Consensus 434 ~l~~~~A~~~~~~~g~~e~Ar~i~e~al~~~P~~~--------~lw~~~~~~e~~~g~~~~a~~~r~l~e~ 496 (1071)
...+..|++-. ..++|..|.++|-.|+.+.|... ..|...+.++ .|+.-+ |.+|.+
T Consensus 248 RY~yY~GrIka-iqldYssA~~~~~qa~rkapq~~alGf~q~v~k~~ivv~ll--~geiPe----rs~F~Q 311 (493)
T KOG2581|consen 248 RYLYYLGRIKA-IQLDYSSALEYFLQALRKAPQHAALGFRQQVNKLMIVVELL--LGEIPE----RSVFRQ 311 (493)
T ss_pred HHHHHHhhHHH-hhcchhHHHHHHHHHHHhCcchhhhhHHHHHHHHHHHHHHH--cCCCcc----hhhhcC
Confidence 44555667766 78899999999999999999754 2455555554 576654 255554
No 296
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=91.66 E-value=0.28 Score=56.58 Aligned_cols=93 Identities=11% Similarity=-0.023 Sum_probs=55.2
Q ss_pred HhCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhCCHHHHHHH
Q 001481 301 KQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAA 380 (1071)
Q Consensus 301 ~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~~A~~~ 380 (1071)
...+++.|+.+|.+||...|++..+|-..+..+.+.+++..|+.=+.+|++. .|.....++..|......+.+.+|+..
T Consensus 16 ~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~-dP~~~K~Y~rrg~a~m~l~~~~~A~~~ 94 (476)
T KOG0376|consen 16 KDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIEL-DPTYIKAYVRRGTAVMALGEFKKALLD 94 (476)
T ss_pred ccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhc-CchhhheeeeccHHHHhHHHHHHHHHH
Confidence 3456777777777777777777666666666666666666666666666664 233333444445555555566666666
Q ss_pred HHHHhhccChhhHHH
Q 001481 381 FPESYIDSDSRFIEK 395 (1071)
Q Consensus 381 ~~~al~~~~p~~~~~ 395 (1071)
|+... .+.|+...+
T Consensus 95 l~~~~-~l~Pnd~~~ 108 (476)
T KOG0376|consen 95 LEKVK-KLAPNDPDA 108 (476)
T ss_pred HHHhh-hcCcCcHHH
Confidence 66554 445554433
No 297
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.30 E-value=40 Score=41.69 Aligned_cols=51 Identities=8% Similarity=0.027 Sum_probs=24.6
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHhhCCChhHHHHHH
Q 001481 80 ADHKARLCSIDKVVEVFERAVQSATY--SVDVWFHYCSLSMSTFEDPNDVRRLF 131 (1071)
Q Consensus 80 a~~e~~~~~~e~A~~lferAL~~~P~--s~~lW~~y~~~~~~~~~~~e~ar~l~ 131 (1071)
++|.++.+.+++|.++-+......|. -.++|..|+..++.. ++++.|..++
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~-~~y~~Aas~~ 415 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFE-GKYDEAASLC 415 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhc-chHHHHHhhh
Confidence 34444445555555544433333232 234666666666555 5555544443
No 298
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=90.93 E-value=51 Score=41.11 Aligned_cols=115 Identities=10% Similarity=0.117 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHCCCCH----HHHHHHHHHHH-HhCCHHHHHHHHHHHHHhcCC--CHHH--HH--HHHHHHHhhCCChh
Q 001481 57 MIGLVYDSFLAEFPLCY----GYWRKYADHKA-RLCSIDKVVEVFERAVQSATY--SVDV--WF--HYCSLSMSTFEDPN 125 (1071)
Q Consensus 57 ~a~~vyeraL~~~P~s~----~lW~~~a~~e~-~~~~~e~A~~lferAL~~~P~--s~~l--W~--~y~~~~~~~~~~~e 125 (1071)
.+.+.++.+++.++.++ .+-+.|+.+.. ...+++.|+..++||+..+-. ..++ -. ..++++.+ .+..
T Consensus 39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~--~~~~ 116 (608)
T PF10345_consen 39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFK--TNPK 116 (608)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh--cCHH
Confidence 34456666665555553 57788888776 457899999999999988743 2221 11 11233333 3445
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHHHH-----ccCHHHHHHHHHHHhccC
Q 001481 126 DVRRLFKRALSFVGKDYLCHTMWDKYIEFEIS-----QQRWSSLAQIFVQTLRFP 175 (1071)
Q Consensus 126 ~ar~l~erAL~~~~~~~~s~~lW~~yi~fe~~-----~~~~~~a~~iy~ral~~p 175 (1071)
.|.+.+++++...... ...-|....+|..- .++...|...+++....+
T Consensus 117 ~a~~~l~~~I~~~~~~--~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a 169 (608)
T PF10345_consen 117 AALKNLDKAIEDSETY--GHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLA 169 (608)
T ss_pred HHHHHHHHHHHHHhcc--CchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHh
Confidence 5999999999876542 24567777777632 246666777777776544
No 299
>PRK12798 chemotaxis protein; Reviewed
Probab=90.56 E-value=29 Score=40.10 Aligned_cols=123 Identities=11% Similarity=0.033 Sum_probs=80.2
Q ss_pred CCHHHHHHHHHHHHHHHhhhccCCC--cHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCChH---HHHHHHHHHHHHc
Q 001481 407 GNFVAACDTYKEALETAAEQRKFHT--LPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCK---LLLEELIKFTMVH 481 (1071)
Q Consensus 407 g~~~~A~~~y~~Al~~~~~~~~~p~--~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~~~P~~~---~lw~~~~~~e~~~ 481 (1071)
.+..+|.+.|+.+.-. .|. ..+.-+....+..-..|+.++++.+-.+-+..|.+++ .+|..++.....+
T Consensus 162 ~dP~~Al~~lD~aRLl------aPGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~ 235 (421)
T PRK12798 162 TDPATALKLLDQARLL------APGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRL 235 (421)
T ss_pred cCHHHHHHHHHHHHHh------CCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhc
Confidence 4556666666666544 222 1233333333333368888888888777777777765 5777777777777
Q ss_pred CCCCchhhHHHHHHHhhccCCcccccCChhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 001481 482 GGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQQFLDLCGTIHDIRNAWNQHIKLFPH 547 (1071)
Q Consensus 482 g~~~~a~~~r~l~e~Al~~~~d~~~~l~~~~~~~lw~~~l~~~e~~~G~~e~a~~~~~ra~~~~p~ 547 (1071)
++.... ..+...+. .++++...+||..-. +---.-|+.+-+.-+-+|+..+...
T Consensus 236 ~d~~~~----~~l~~~ls-------~~d~~~q~~lYL~iA-R~Ali~Gk~~lA~~As~~A~~L~~~ 289 (421)
T PRK12798 236 DDEIRD----ARLVEILS-------FMDPERQRELYLRIA-RAALIDGKTELARFASERALKLADP 289 (421)
T ss_pred cccccH----HHHHHHHH-------hcCchhHHHHHHHHH-HHHHHcCcHHHHHHHHHHHHHhccC
Confidence 654443 44566554 455566666776666 6666789999999999999999844
No 300
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=90.50 E-value=2.3 Score=45.15 Aligned_cols=73 Identities=21% Similarity=0.104 Sum_probs=47.3
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhh---ccCC----CcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhC
Q 001481 392 FIEKVTFKANMERRLGNFVAACDTYKEALETAAEQ---RKFH----TLPLLYVQFSRLTYTTTGSADNARDILIDGIKHV 464 (1071)
Q Consensus 392 ~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~---~~~p----~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~~~ 464 (1071)
.+.++++.+.+++..|+.+.....+.+|++..... ...+ ....+.+.+|.+.. +.|++++|.+.|.+.+..-
T Consensus 117 ~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~r-rlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 117 KAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNR-RLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHcCC
Confidence 35667777778887777554444444444443211 1111 23456667788877 9999999999999998654
Q ss_pred C
Q 001481 465 P 465 (1071)
Q Consensus 465 P 465 (1071)
.
T Consensus 196 ~ 196 (214)
T PF09986_consen 196 K 196 (214)
T ss_pred C
Confidence 3
No 301
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=90.33 E-value=1.9 Score=38.88 Aligned_cols=49 Identities=16% Similarity=0.027 Sum_probs=37.6
Q ss_pred chHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHCCCC
Q 001481 22 GKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLC 72 (1071)
Q Consensus 22 ~~~~le~al~~nP~d~~~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P~s 72 (1071)
+.+.+++.|+.||+|+++.+.++..+... |+++.|...+-.++..++..
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~--g~~e~Al~~Ll~~v~~dr~~ 55 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAA--GDYEEALDQLLELVRRDRDY 55 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHT--T-HHHHHHHHHHHHCC-TTC
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHhCccc
Confidence 35678899999999999999988888777 88888888888888777654
No 302
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.25 E-value=11 Score=46.31 Aligned_cols=147 Identities=14% Similarity=-0.036 Sum_probs=87.5
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh-----hCCHHHHHHHHHHHHHHh----hccchHHHHHHHHHHHHhC---
Q 001481 305 FDWVVKLYERCLIPCADYPEFWMRYVDFMES-----KGGREIASYALDRATQIF----LKRLPVIHLFNARYKEQIG--- 372 (1071)
Q Consensus 305 ~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~-----~g~~e~A~~il~rAl~~~----~~~~p~i~~~~a~~e~~~g--- 372 (1071)
...+...|+.+.... +...-+.++.++.. ..+.+.|...|++|.+.+ ....+.....++.++....
T Consensus 228 ~~~a~~~~~~~a~~g--~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~ 305 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG--HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVE 305 (552)
T ss_pred hhHHHHHHHHHHhhc--chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCc
Confidence 346777777776542 22222233332222 235788888888887621 1123334555666665532
Q ss_pred --CHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhh-
Q 001481 373 --DTSAARAAFPESYIDSDSRFIEKVTFKANMERRL---GNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTT- 446 (1071)
Q Consensus 373 --~~~~A~~~~~~al~~~~p~~~~~w~~~a~le~~~---g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~- 446 (1071)
+.+.|..+|.++- .. ++.+.-+.++.++..- .++..|..+|..|... ....+++.+|.++..-
T Consensus 306 ~~d~~~A~~~~~~aA-~~--g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--------G~~~A~~~la~~y~~G~ 374 (552)
T KOG1550|consen 306 KIDYEKALKLYTKAA-EL--GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--------GHILAIYRLALCYELGL 374 (552)
T ss_pred cccHHHHHHHHHHHH-hc--CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--------CChHHHHHHHHHHHhCC
Confidence 5667888888876 22 4455555666554432 3567888888888765 3456677777776521
Q ss_pred --cCCHHHHHHHHHHHHhhC
Q 001481 447 --TGSADNARDILIDGIKHV 464 (1071)
Q Consensus 447 --~g~~e~Ar~i~e~al~~~ 464 (1071)
..+.+.|+.+|.++.++.
T Consensus 375 gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 375 GVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred CcCCCHHHHHHHHHHHHHcc
Confidence 236788888888888776
No 303
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=90.11 E-value=7.9 Score=41.82 Aligned_cols=54 Identities=22% Similarity=0.246 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHhhhc--cCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Q 001481 409 FVAACDTYKEALETAAEQR--KFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIK 462 (1071)
Q Consensus 409 ~~~A~~~y~~Al~~~~~~~--~~p~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~ 462 (1071)
.+.|..+|++|++.....- .+|..-.+.++++-|++...|+.++|.++-+.|+.
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4789999999999876532 23334467899999988789999999888777764
No 304
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=90.04 E-value=0.7 Score=32.43 Aligned_cols=32 Identities=9% Similarity=0.076 Sum_probs=20.2
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHCCCC
Q 001481 39 EWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLC 72 (1071)
Q Consensus 39 ~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P~s 72 (1071)
+++.++..+... ++.++|+.+|+++++.+|++
T Consensus 2 a~~~~a~~~~~~--g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKL--GDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHH--CHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHc--cCHHHHHHHHHHHHHHCcCC
Confidence 345555555555 67777777777777777764
No 305
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=89.60 E-value=0.77 Score=32.63 Aligned_cols=31 Identities=16% Similarity=0.274 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhcC
Q 001481 74 GYWRKYADHKARLCSIDKVVEVFERAVQSAT 104 (1071)
Q Consensus 74 ~lW~~~a~~e~~~~~~e~A~~lferAL~~~P 104 (1071)
++|..++..+...|++++|.+.|++|++..|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4677777777777777777777777777766
No 306
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.35 E-value=18 Score=38.84 Aligned_cols=192 Identities=10% Similarity=0.142 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHhhcC-----CCCC-HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhh-ccchHHH
Q 001481 289 LKNWHDYLSFAEKQGDFDWVVKLYERCLIP-----CADY-PEFWMRYVDFMESKGGREIASYALDRATQIFL-KRLPVIH 361 (1071)
Q Consensus 289 ~~~W~~y~~~~~~~g~~~~a~~~yerAL~~-----~p~~-~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~-~~~p~i~ 361 (1071)
..+....+....+.+++++....|.+.|.. ..++ +........|.....+.+...+.|+..+..+. -.+..+|
T Consensus 65 FKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLW 144 (440)
T KOG1464|consen 65 FKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLW 144 (440)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceee
Confidence 356667777777888998888888887742 2222 23333333443344444555556655554421 1233455
Q ss_pred HH----HHHHHHHhCCHHHHHHHHHHHhhcc-----------ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhh
Q 001481 362 LF----NARYKEQIGDTSAARAAFPESYIDS-----------DSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQ 426 (1071)
Q Consensus 362 ~~----~a~~e~~~g~~~~A~~~~~~al~~~-----------~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~ 426 (1071)
+. ++.++...+++.+..++++..-..| .....++|..-+.++....+-.+...+|++|+..-..-
T Consensus 145 FKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAI 224 (440)
T KOG1464|consen 145 FKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAI 224 (440)
T ss_pred eeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccC
Confidence 53 4555555666666666655543211 11345667667778888888889999999999872111
Q ss_pred ccCCCcHHHHHH-HHHHHHhhcCCHHHHHHHHHHHHhhCCChH-------HHHHHHHHHHHHcC
Q 001481 427 RKFHTLPLLYVQ-FSRLTYTTTGSADNARDILIDGIKHVPNCK-------LLLEELIKFTMVHG 482 (1071)
Q Consensus 427 ~~~p~~~~l~~~-~A~~~~~~~g~~e~Ar~i~e~al~~~P~~~-------~lw~~~~~~e~~~g 482 (1071)
. +|.--.+.-. -|.+.. +.|.+++|-.-|-.|++.+-.+. .-|+-+++++++.|
T Consensus 225 P-HPlImGvIRECGGKMHl-reg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~ 286 (440)
T KOG1464|consen 225 P-HPLIMGVIRECGGKMHL-REGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSG 286 (440)
T ss_pred C-chHHHhHHHHcCCcccc-ccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcC
Confidence 1 1111111111 122222 56788999988888888755432 23444555555543
No 307
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=89.34 E-value=0.75 Score=33.55 Aligned_cols=28 Identities=21% Similarity=0.375 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001481 395 KVTFKANMERRLGNFVAACDTYKEALET 422 (1071)
Q Consensus 395 ~w~~~a~le~~~g~~~~A~~~y~~Al~~ 422 (1071)
+|..++.++.+.|++++|+.+|++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4778899999999999999999998866
No 308
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=89.25 E-value=1.7 Score=51.00 Aligned_cols=105 Identities=15% Similarity=0.137 Sum_probs=82.7
Q ss_pred HHHHH-HhCCHHHHHHHHHHHhhccChhhH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHH
Q 001481 365 ARYKE-QIGDTSAARAAFPESYIDSDSRFI-EKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRL 442 (1071)
Q Consensus 365 a~~e~-~~g~~~~A~~~~~~al~~~~p~~~-~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~ 442 (1071)
|-+++ ..|+..-|.+++.+|+ ...|.-. --...++++....|-...|-.++..++.+ ....+..++..|++
T Consensus 613 aglywr~~gn~~~a~~cl~~a~-~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~------~~sepl~~~~~g~~ 685 (886)
T KOG4507|consen 613 AGLYWRAVGNSTFAIACLQRAL-NLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAI------NSSEPLTFLSLGNA 685 (886)
T ss_pred ccceeeecCCcHHHHHHHHHHh-ccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhh------cccCchHHHhcchh
Confidence 34444 4899999999999998 4455222 22667788888888888999999999998 45567788888999
Q ss_pred HHhhcCCHHHHHHHHHHHHhhCCChHHHHHHHHHH
Q 001481 443 TYTTTGSADNARDILIDGIKHVPNCKLLLEELIKF 477 (1071)
Q Consensus 443 ~~~~~g~~e~Ar~i~e~al~~~P~~~~lw~~~~~~ 477 (1071)
+. .+.+++.|.+.|+.|+++.|++..+-..+..+
T Consensus 686 ~l-~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 686 YL-ALKNISGALEAFRQALKLTTKCPECENSLKLI 719 (886)
T ss_pred HH-HHhhhHHHHHHHHHHHhcCCCChhhHHHHHHH
Confidence 87 89999999999999999999988765555444
No 309
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=89.20 E-value=50 Score=38.94 Aligned_cols=166 Identities=14% Similarity=-0.029 Sum_probs=105.6
Q ss_pred CHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhCCHHHHHHHHHH
Q 001481 304 DFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPE 383 (1071)
Q Consensus 304 ~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~~A~~~~~~ 383 (1071)
+..-+..++.|.|.. ..+-..++.++.+|...| .+.--.+++|.++... ++..+-..++..++. ++...+...|.+
T Consensus 81 k~~~veh~c~~~l~~-~e~kmal~el~q~y~en~-n~~l~~lWer~ve~df-nDvv~~ReLa~~yEk-ik~sk~a~~f~K 156 (711)
T COG1747 81 KNQIVEHLCTRVLEY-GESKMALLELLQCYKENG-NEQLYSLWERLVEYDF-NDVVIGRELADKYEK-IKKSKAAEFFGK 156 (711)
T ss_pred HHHHHHHHHHHHHHh-cchHHHHHHHHHHHHhcC-chhhHHHHHHHHHhcc-hhHHHHHHHHHHHHH-hchhhHHHHHHH
Confidence 344566677777754 455677788888887774 5666788888888621 122334445666666 788899999999
Q ss_pred HhhccCh-----hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHH
Q 001481 384 SYIDSDS-----RFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILI 458 (1071)
Q Consensus 384 al~~~~p-----~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~g~~e~Ar~i~e 458 (1071)
++....| ..-++|-++..+- -.+.|....+..+.-..+. .....+.+..-.-.+....++++|..|+.
T Consensus 157 a~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg-----~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk 229 (711)
T COG1747 157 ALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLG-----EGRGSVLMQDVYKKYSENENWTEAIRILK 229 (711)
T ss_pred HHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhc-----cchHHHHHHHHHHHhccccCHHHHHHHHH
Confidence 9854444 3345677666432 2345555555555444321 12223333333222347889999999999
Q ss_pred HHHhhCCChHHHHHHHHHHHHH
Q 001481 459 DGIKHVPNCKLLLEELIKFTMV 480 (1071)
Q Consensus 459 ~al~~~P~~~~lw~~~~~~e~~ 480 (1071)
-.|+.+-.+...-...+++++.
T Consensus 230 ~il~~d~k~~~ar~~~i~~lRd 251 (711)
T COG1747 230 HILEHDEKDVWARKEIIENLRD 251 (711)
T ss_pred HHhhhcchhhhHHHHHHHHHHH
Confidence 9999988887777778877764
No 310
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=89.16 E-value=7.1 Score=46.29 Aligned_cols=132 Identities=20% Similarity=0.147 Sum_probs=77.6
Q ss_pred hCCHHHHHHHHH--HhhcCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhCCHHHHHH
Q 001481 302 QGDFDWVVKLYE--RCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARA 379 (1071)
Q Consensus 302 ~g~~~~a~~~ye--rAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~~A~~ 379 (1071)
.++++.+....+ +.+..-| .+.....+.|+++.|..+.|+.+. .+|...+. +..+.|+++.|.+
T Consensus 274 ~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~---------~D~~~rFe---LAl~lg~L~~A~~ 339 (443)
T PF04053_consen 274 RGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFV---------TDPDHRFE---LALQLGNLDIALE 339 (443)
T ss_dssp TT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHS---------S-HHHHHH---HHHHCT-HHHHHH
T ss_pred cCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhc---------CChHHHhH---HHHhcCCHHHHHH
Confidence 566777655554 2222223 556777888999999766665543 23433332 3356899998888
Q ss_pred HHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 001481 380 AFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILID 459 (1071)
Q Consensus 380 ~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~ 459 (1071)
+.... +....|..+++...+.|+++-|+.+|.++-+. . .+..++. ..|+.+.-+++-+.
T Consensus 340 ~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~----------~----~L~lLy~-~~g~~~~L~kl~~~ 398 (443)
T PF04053_consen 340 IAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKDF----------S----GLLLLYS-STGDREKLSKLAKI 398 (443)
T ss_dssp HCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT-H----------H----HHHHHHH-HCT-HHHHHHHHHH
T ss_pred HHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCc----------c----ccHHHHH-HhCCHHHHHHHHHH
Confidence 74322 34568999999999999999999999887544 1 2222233 78888888888877
Q ss_pred HHhhCCChH
Q 001481 460 GIKHVPNCK 468 (1071)
Q Consensus 460 al~~~P~~~ 468 (1071)
|....-.+.
T Consensus 399 a~~~~~~n~ 407 (443)
T PF04053_consen 399 AEERGDINI 407 (443)
T ss_dssp HHHTT-HHH
T ss_pred HHHccCHHH
Confidence 765544333
No 311
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=89.14 E-value=14 Score=42.59 Aligned_cols=155 Identities=13% Similarity=0.048 Sum_probs=89.8
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh----hc----------------cCCCcH---HHHHHHHHHHHh
Q 001481 389 DSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAE----QR----------------KFHTLP---LLYVQFSRLTYT 445 (1071)
Q Consensus 389 ~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~----~~----------------~~p~~~---~l~~~~A~~~~~ 445 (1071)
.|-+++.++..+.+.+..|+...|.++.++|+=.+.. .. ..+.+- .+...+...+.
T Consensus 36 ~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~- 114 (360)
T PF04910_consen 36 NPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLG- 114 (360)
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHH-
Confidence 5677777888888888888887777777777655431 11 011122 23345555666
Q ss_pred hcCCHHHHHHHHHHHHhhCCC-hHHHHHHHHHHHHHcC-CCCchhhHHHHHHHhhccCCcccccCChhhHHHHHHHHHHH
Q 001481 446 TTGSADNARDILIDGIKHVPN-CKLLLEELIKFTMVHG-GRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQQ 523 (1071)
Q Consensus 446 ~~g~~e~Ar~i~e~al~~~P~-~~~lw~~~~~~e~~~g-~~~~a~~~r~l~e~Al~~~~d~~~~l~~~~~~~lw~~~l~~ 523 (1071)
+.|-+..|.++.+-.+..+|. ++--...+++++.-.. .++= +-.+++..........-..-|...-.+-..+. .
T Consensus 115 ~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~---Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~-~ 190 (360)
T PF04910_consen 115 RRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQW---LIDFSESPLAKCYRNWLSLLPNFAFSIALAYF-R 190 (360)
T ss_pred hcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHH---HHHHHHhHhhhhhhhhhhhCccHHHHHHHHHH-H
Confidence 899999999999999999998 6655555555554332 2221 22344433221000000011233333344444 3
Q ss_pred HHHh-----------cCCHHHHHHHHHHHHHhCCCC
Q 001481 524 FLDL-----------CGTIHDIRNAWNQHIKLFPHT 548 (1071)
Q Consensus 524 ~e~~-----------~G~~e~a~~~~~ra~~~~p~~ 548 (1071)
.+.. .++.+.|..++.+|+..+|.-
T Consensus 191 l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~v 226 (360)
T PF04910_consen 191 LEKEESSQSSAQSGRSENSESADEALQKAILRFPWV 226 (360)
T ss_pred hcCccccccccccccccchhHHHHHHHHHHHHhHHH
Confidence 3333 334588899999999988863
No 312
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=88.43 E-value=69 Score=39.06 Aligned_cols=39 Identities=15% Similarity=0.349 Sum_probs=23.2
Q ss_pred HHHHhcCCCCCchHHHHHHHHHHHHccCHHHHHHHHHHHh
Q 001481 133 RALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTL 172 (1071)
Q Consensus 133 rAL~~~~~~~~s~~lW~~yi~fe~~~~~~~~a~~iy~ral 172 (1071)
.|+..+..++ ..+||...+++...+-..+.|...|-|+-
T Consensus 681 dA~qfiEdnP-HprLWrllAe~Al~Kl~l~tAE~AFVrc~ 719 (1189)
T KOG2041|consen 681 DAIQFIEDNP-HPRLWRLLAEYALFKLALDTAEHAFVRCG 719 (1189)
T ss_pred HHHHHHhcCC-chHHHHHHHHHHHHHHhhhhHhhhhhhhc
Confidence 3444444444 36788887777665555666666665553
No 313
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=88.29 E-value=4.9 Score=42.71 Aligned_cols=47 Identities=19% Similarity=0.277 Sum_probs=33.6
Q ss_pred HHHHHHHHHhhcc-Ch----hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001481 376 AARAAFPESYIDS-DS----RFIEKVTFKANMERRLGNFVAACDTYKEALET 422 (1071)
Q Consensus 376 ~A~~~~~~al~~~-~p----~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~ 422 (1071)
.|+..|.++++.- .| +...+.+..|.+.++.|++++|...|.+.+..
T Consensus 143 ~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 143 KALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 4555555555311 11 33567778899999999999999999999886
No 314
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.10 E-value=15 Score=43.71 Aligned_cols=99 Identities=12% Similarity=0.037 Sum_probs=60.7
Q ss_pred HHHHHHhCCHHHHHHHHHHHhhccChh-hHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHH
Q 001481 365 ARYKEQIGDTSAARAAFPESYIDSDSR-FIEKVTFKANME-RRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRL 442 (1071)
Q Consensus 365 a~~e~~~g~~~~A~~~~~~al~~~~p~-~~~~w~~~a~le-~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~ 442 (1071)
...+...|-+..|.+..+-.+ .++|. .+-..+.+++++ .+..+|.-.+.+++..-... .-...| +..+-+.+|++
T Consensus 349 m~~l~~RGC~rTA~E~cKlll-sLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n-~l~~~P-N~~yS~AlA~f 425 (665)
T KOG2422|consen 349 MQSLAQRGCWRTALEWCKLLL-SLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMN-KLSQLP-NFGYSLALARF 425 (665)
T ss_pred HHHHHhcCChHHHHHHHHHHh-hcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhc-cHhhcC-CchHHHHHHHH
Confidence 344677888888988888777 66765 444444444433 34567777777777652220 000012 22344566777
Q ss_pred HHhhcC--CHHHHHHHHHHHHhhCCC
Q 001481 443 TYTTTG--SADNARDILIDGIKHVPN 466 (1071)
Q Consensus 443 ~~~~~g--~~e~Ar~i~e~al~~~P~ 466 (1071)
+..... +...|+..+.+|++.+|.
T Consensus 426 ~l~~~~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 426 FLRKNEEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred HHhcCChhhHHHHHHHHHHHHHhCcH
Confidence 662232 367889999999999994
No 315
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=87.95 E-value=5.6 Score=43.72 Aligned_cols=63 Identities=14% Similarity=0.185 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHh
Q 001481 74 GYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSF 137 (1071)
Q Consensus 74 ~lW~~~a~~e~~~~~~e~A~~lferAL~~~P~s~~lW~~y~~~~~~~~~~~e~ar~l~erAL~~ 137 (1071)
.....+++.+...++++.+...+++.+..+|.+.++|...+..+... ++...|+..|++.-+.
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~-g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVN-GRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHc-CCchHHHHHHHHHHHH
Confidence 45667777778888999999999999999999999999999999998 9999999999876653
No 316
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=87.90 E-value=21 Score=43.93 Aligned_cols=144 Identities=15% Similarity=-0.008 Sum_probs=98.6
Q ss_pred CHHHHHHHHHHhhcC-----CCCCHHHHHHHHHHHHhhC-----CHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHh--
Q 001481 304 DFDWVVKLYERCLIP-----CADYPEFWMRYVDFMESKG-----GREIASYALDRATQIFLKRLPVIHLFNARYKEQI-- 371 (1071)
Q Consensus 304 ~~~~a~~~yerAL~~-----~p~~~~lW~~ya~~l~~~g-----~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~-- 371 (1071)
|.+.|+..|++|... .-.+...-+.++.+|.... +.+.|..+|.+|... .+|..-+..+.+++.-
T Consensus 264 d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~---g~~~a~~~lg~~~~~g~~ 340 (552)
T KOG1550|consen 264 DLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL---GNPDAQYLLGVLYETGTK 340 (552)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc---CCchHHHHHHHHHHcCCc
Confidence 678899999988761 0113345667777777643 456799999998875 5677777777766543
Q ss_pred -CCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhh
Q 001481 372 -GDTSAARAAFPESYIDSDSRFIEKVTFKANMERRL----GNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTT 446 (1071)
Q Consensus 372 -g~~~~A~~~~~~al~~~~p~~~~~w~~~a~le~~~----g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~ 446 (1071)
.++.+|..+|..|.. .++..+.+.++.++..- -+...|...|++|.+. . .+.+...++.+++..
T Consensus 341 ~~d~~~A~~yy~~Aa~---~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~------g--~~~A~~~~~~~~~~g 409 (552)
T KOG1550|consen 341 ERDYRRAFEYYSLAAK---AGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEK------G--NPSAAYLLGAFYEYG 409 (552)
T ss_pred cccHHHHHHHHHHHHH---cCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHc------c--ChhhHHHHHHHHHHc
Confidence 357899999999973 36778888888877652 3788999999999887 3 445444455555434
Q ss_pred cCCHHHHHHHHHHHH
Q 001481 447 TGSADNARDILIDGI 461 (1071)
Q Consensus 447 ~g~~e~Ar~i~e~al 461 (1071)
.++++.+...|...-
T Consensus 410 ~~~~~~~~~~~~~~a 424 (552)
T KOG1550|consen 410 VGRYDTALALYLYLA 424 (552)
T ss_pred cccccHHHHHHHHHH
Confidence 466666655544443
No 317
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=87.69 E-value=25 Score=33.22 Aligned_cols=88 Identities=17% Similarity=0.094 Sum_probs=48.6
Q ss_pred CCHHHHHHHHHHHHHHhhccch------------HHHHHHHHHHHHhCCHHHHHHHHHHHhh------ccChhhHHHHHH
Q 001481 337 GGREIASYALDRATQIFLKRLP------------VIHLFNARYKEQIGDTSAARAAFPESYI------DSDSRFIEKVTF 398 (1071)
Q Consensus 337 g~~e~A~~il~rAl~~~~~~~p------------~i~~~~a~~e~~~g~~~~A~~~~~~al~------~~~p~~~~~w~~ 398 (1071)
|.+++|...+++|.++ .+..| -++-.++..+..+|+|++++..-++++. ++..+.-+.|+.
T Consensus 23 g~~~eAa~s~r~AM~~-srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIa 101 (144)
T PF12968_consen 23 GAYEEAAASCRKAMEV-SRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIA 101 (144)
T ss_dssp T-HHHHHHHHHHHHHH-HTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHH-hccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHH
Confidence 4566666666666654 22222 1233344455667777766655555542 344455566664
Q ss_pred ----HHHHHHHcCCHHHHHHHHHHHHHHHhh
Q 001481 399 ----KANMERRLGNFVAACDTYKEALETAAE 425 (1071)
Q Consensus 399 ----~a~le~~~g~~~~A~~~y~~Al~~~~~ 425 (1071)
.+..+...|..++|...|+.+.+.+.+
T Consensus 102 aVfsra~Al~~~Gr~~eA~~~fr~agEMiaE 132 (144)
T PF12968_consen 102 AVFSRAVALEGLGRKEEALKEFRMAGEMIAE 132 (144)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Confidence 344566778888888888888777543
No 318
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=87.46 E-value=30 Score=41.62 Aligned_cols=33 Identities=18% Similarity=0.240 Sum_probs=24.7
Q ss_pred hhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001481 510 LEDVEDISSLYLQQFLDLCGTIHDIRNAWNQHIK 543 (1071)
Q Consensus 510 ~~~~~~lw~~~l~~~e~~~G~~e~a~~~~~ra~~ 543 (1071)
|+..++++.-|. +|..+...+++|.++|.||-+
T Consensus 800 Pe~~~dVy~pya-qwLAE~DrFeEAqkAfhkAGr 832 (1081)
T KOG1538|consen 800 PEFKDDVYMPYA-QWLAENDRFEEAQKAFHKAGR 832 (1081)
T ss_pred ccccccccchHH-HHhhhhhhHHHHHHHHHHhcc
Confidence 345567788888 888888888888888876543
No 319
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=87.35 E-value=0.8 Score=30.87 Aligned_cols=32 Identities=16% Similarity=0.164 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCC
Q 001481 434 LLYVQFSRLTYTTTGSADNARDILIDGIKHVPN 466 (1071)
Q Consensus 434 ~l~~~~A~~~~~~~g~~e~Ar~i~e~al~~~P~ 466 (1071)
.+|..+|.++. ..|++++|..+|+++++..|.
T Consensus 2 ~~~~~~a~~~~-~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYL-KLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHH-HHhhHHHHHHHHHHHHccCCC
Confidence 46788899988 899999999999999998875
No 320
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=87.28 E-value=0.98 Score=32.93 Aligned_cols=28 Identities=11% Similarity=0.158 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHhh
Q 001481 435 LYVQFSRLTYTTTGSADNARDILIDGIKH 463 (1071)
Q Consensus 435 l~~~~A~~~~~~~g~~e~Ar~i~e~al~~ 463 (1071)
.|..+|.++. ..|++++|..+|+++|..
T Consensus 1 al~~Lg~~~~-~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYR-QQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHH-HCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHH-HcCCHHHHHHHHHHHHHh
Confidence 3678899988 999999999999996643
No 321
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=86.70 E-value=5.9 Score=43.86 Aligned_cols=61 Identities=15% Similarity=0.096 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001481 361 HLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALET 422 (1071)
Q Consensus 361 ~~~~a~~e~~~g~~~~A~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~ 422 (1071)
|...|.+....|+|-.|+.-..+|+ .++|.+++++++-+.+...+..++.|..-++..+..
T Consensus 122 Y~NRAAa~~~l~NyRs~l~Dcs~al-~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~ 182 (390)
T KOG0551|consen 122 YTNRAAAQLYLGNYRSALNDCSAAL-KLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQI 182 (390)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhh
Confidence 3333344444555656666666666 556666666666666665555555555555555443
No 322
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.07 E-value=26 Score=41.73 Aligned_cols=177 Identities=13% Similarity=0.089 Sum_probs=104.1
Q ss_pred CHHHHHHHHHHhhcC------------CCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHh
Q 001481 304 DFDWVVKLYERCLIP------------CADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQI 371 (1071)
Q Consensus 304 ~~~~a~~~yerAL~~------------~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~ 371 (1071)
.+.++...|.-|+.. .|.+.+-.+..+.+....|+.+.|.++++||+-.+. .+|. +.|.--.
T Consensus 253 sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d----~a~h--p~F~~~s 326 (665)
T KOG2422|consen 253 SYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFD----RALH--PNFIPFS 326 (665)
T ss_pred HHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHH----HHhc--ccccccc
Confidence 456666666666653 266667777777777777777777777777764311 1110 1111111
Q ss_pred CCHHHHHHHHHHHhhccCh---hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCC-cHHHHHHHHHHHHhhc
Q 001481 372 GDTSAARAAFPESYIDSDS---RFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHT-LPLLYVQFSRLTYTTT 447 (1071)
Q Consensus 372 g~~~~A~~~~~~al~~~~p---~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~-~~~l~~~~A~~~~~~~ 447 (1071)
|+- -+..+.| .+..+..+++..+.+.|-...|.+.++-.+.+ +|. +|...+.+..++..+.
T Consensus 327 g~c---------RL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsL------dp~eDPl~~l~~ID~~ALra 391 (665)
T KOG2422|consen 327 GNC---------RLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSL------DPSEDPLGILYLIDIYALRA 391 (665)
T ss_pred ccc---------cCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc------CCcCCchhHHHHHHHHHHHH
Confidence 110 0000111 23344556777778889999999999999888 565 6777766667766566
Q ss_pred CCHHHHHHHHHHH-----HhhCCChHHHHHHHHHHHHHcCCCCchhhHHHHHHHhhccCC
Q 001481 448 GSADNARDILIDG-----IKHVPNCKLLLEELIKFTMVHGGRSHISIVDAVISNALYSRP 502 (1071)
Q Consensus 448 g~~e~Ar~i~e~a-----l~~~P~~~~lw~~~~~~e~~~g~~~~a~~~r~l~e~Al~~~~ 502 (1071)
++|.=-+..++.. |...|+ ..+=..++.|+....+......++..+.+|+...|
T Consensus 392 reYqwiI~~~~~~e~~n~l~~~PN-~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 392 REYQWIIELSNEPENMNKLSQLPN-FGYSLALARFFLRKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred HhHHHHHHHHHHHHhhccHhhcCC-chHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCc
Confidence 7776666666655 233443 23334455565554443233346788999998766
No 323
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=86.00 E-value=7.1 Score=46.12 Aligned_cols=117 Identities=17% Similarity=0.078 Sum_probs=84.7
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhccch-HHHHHHHHHHHHhCCHHHHHHHHHH
Q 001481 305 FDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLP-VIHLFNARYKEQIGDTSAARAAFPE 383 (1071)
Q Consensus 305 ~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p-~i~~~~a~~e~~~g~~~~A~~~~~~ 383 (1071)
.+....+.-.++...+.+..+...-+.|....|+.-+|..++.+|+-...+... .+.+..|.++.+.|...+|--|+..
T Consensus 195 ~~~~~~~~~~glq~~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhA 274 (886)
T KOG4507|consen 195 IDDIGHLIHEGLQKNTSSWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHA 274 (886)
T ss_pred HHHHHHHHHHhhhcCchhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeeh
Confidence 345566667777777877777666555555579999999999999875333222 4677788999999999999988888
Q ss_pred HhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001481 384 SYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALET 422 (1071)
Q Consensus 384 al~~~~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~ 422 (1071)
|+ +-.+....-++..+.++..+|.+....-.|..|.+.
T Consensus 275 A~-~dA~~~t~n~y~l~~i~aml~~~N~S~~~ydha~k~ 312 (886)
T KOG4507|consen 275 AL-DDADFFTSNYYTLGNIYAMLGEYNHSVLCYDHALQA 312 (886)
T ss_pred hc-cCCccccccceeHHHHHHHHhhhhhhhhhhhhhhcc
Confidence 87 334444444666777777777777777788877766
No 324
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=85.95 E-value=7.6 Score=46.02 Aligned_cols=132 Identities=16% Similarity=0.128 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHH
Q 001481 291 NWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQ 370 (1071)
Q Consensus 291 ~W~~y~~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~ 370 (1071)
.-...+.|+++.|-++.|..+- .+++.-+.+| .+.|+++.|.++.+.. ..+..|..+++....
T Consensus 297 ~~~~i~~fL~~~G~~e~AL~~~--------~D~~~rFeLA---l~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL~ 359 (443)
T PF04053_consen 297 QGQSIARFLEKKGYPELALQFV--------TDPDHRFELA---LQLGNLDIALEIAKEL------DDPEKWKQLGDEALR 359 (443)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHS--------S-HHHHHHHH---HHCT-HHHHHHHCCCC------STHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHhhc--------CChHHHhHHH---HhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHH
Confidence 3567788999999655554432 3445555554 3678888877655221 356789999999999
Q ss_pred hCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhhcCCH
Q 001481 371 IGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSA 450 (1071)
Q Consensus 371 ~g~~~~A~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~g~~ 450 (1071)
.|+++-|..+|.++- + |-.+.-++.-.|+.+...++.+.|... . . .-+.+...+ ..||+
T Consensus 360 ~g~~~lAe~c~~k~~-d--------~~~L~lLy~~~g~~~~L~kl~~~a~~~------~-~---~n~af~~~~--~lgd~ 418 (443)
T PF04053_consen 360 QGNIELAEECYQKAK-D--------FSGLLLLYSSTGDREKLSKLAKIAEER------G-D---INIAFQAAL--LLGDV 418 (443)
T ss_dssp TTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT------T-----HHHHHHHHH--HHT-H
T ss_pred cCCHHHHHHHHHhhc-C--------ccccHHHHHHhCCHHHHHHHHHHHHHc------c-C---HHHHHHHHH--HcCCH
Confidence 999999999999875 1 334444555678888888888777654 1 1 112222222 57888
Q ss_pred HHHHHHHHHH
Q 001481 451 DNARDILIDG 460 (1071)
Q Consensus 451 e~Ar~i~e~a 460 (1071)
++..+++.++
T Consensus 419 ~~cv~lL~~~ 428 (443)
T PF04053_consen 419 EECVDLLIET 428 (443)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHc
Confidence 8888877664
No 325
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=85.94 E-value=28 Score=37.53 Aligned_cols=90 Identities=12% Similarity=0.116 Sum_probs=49.3
Q ss_pred CCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCh---------H---HHHHHH
Q 001481 407 GNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNC---------K---LLLEEL 474 (1071)
Q Consensus 407 g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~~~P~~---------~---~lw~~~ 474 (1071)
.+.+-....|+..++.++.........+.-..+|.++. ..+++.+--++++..-..|... . ++|..-
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~f-d~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlE 197 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYF-DRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALE 197 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhhe-eHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhH
Confidence 44455566666666665432221111122245677776 7788888888877776666532 1 233333
Q ss_pred HHHHHHcCCCCchhhHHHHHHHhhcc
Q 001481 475 IKFTMVHGGRSHISIVDAVISNALYS 500 (1071)
Q Consensus 475 ~~~e~~~g~~~~a~~~r~l~e~Al~~ 500 (1071)
+.++....+.++ +..+|++|+..
T Consensus 198 IQmYT~qKnNKk---LK~lYeqalhi 220 (440)
T KOG1464|consen 198 IQMYTEQKNNKK---LKALYEQALHI 220 (440)
T ss_pred hhhhhhhcccHH---HHHHHHHHHHh
Confidence 333333333333 46899999864
No 326
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=85.72 E-value=8.6 Score=43.93 Aligned_cols=129 Identities=9% Similarity=0.060 Sum_probs=89.8
Q ss_pred chHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----h-CCHHHHHHHH
Q 001481 22 GKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKAR----L-CSIDKVVEVF 96 (1071)
Q Consensus 22 ~~~~le~al~~nP~d~~~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P~s~~lW~~~a~~e~~----~-~~~e~A~~lf 96 (1071)
..+..+.+|+.||+++.+|....-.+.+.+..++.+=..+.+++|+.+|.|+..|.. =++... . +.-.+=....
T Consensus 94 eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~Y-RRfV~~~~~~~~~~~~~El~ft 172 (421)
T KOG0529|consen 94 ELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHY-RRFVVEQAERSRNLEKEELEFT 172 (421)
T ss_pred HHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHH-HHHHHHHHhcccccchhHHHHH
Confidence 345788999999999999999999888764356888889999999999999998853 233221 1 1234455678
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHhhC-----C---ChhHHHHHHHHHHHhcCCCCCchHHHHHH
Q 001481 97 ERAVQSATYSVDVWFHYCSLSMSTF-----E---DPNDVRRLFKRALSFVGKDYLCHTMWDKY 151 (1071)
Q Consensus 97 erAL~~~P~s~~lW~~y~~~~~~~~-----~---~~e~ar~l~erAL~~~~~~~~s~~lW~~y 151 (1071)
.+++..++.+...|-.---++.... | ..+....-++....++=+|+.....|..+
T Consensus 173 t~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY~ 235 (421)
T KOG0529|consen 173 TKLINDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFYH 235 (421)
T ss_pred HHHHhccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeeeh
Confidence 8899999999999965444443221 3 14556666777666665665555667553
No 327
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=85.24 E-value=28 Score=44.97 Aligned_cols=77 Identities=12% Similarity=-0.119 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001481 339 REIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKE 418 (1071)
Q Consensus 339 ~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~~A~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~~y~~ 418 (1071)
++.-+.-|++|+..+....+..|-..-++-.+.|-|.+|+.+|.-..+ ....++..|++.+++.+.+++|.-.|++
T Consensus 889 ID~~L~ry~~AL~hLs~~~~~~~~e~~n~I~kh~Ly~~aL~ly~~~~e----~~k~i~~~ya~hL~~~~~~~~Aal~Ye~ 964 (1265)
T KOG1920|consen 889 IDDYLKRYEDALSHLSECGETYFPECKNYIKKHGLYDEALALYKPDSE----KQKVIYEAYADHLREELMSDEAALMYER 964 (1265)
T ss_pred HHHHHHHHHHHHHHHHHcCccccHHHHHHHHhcccchhhhheeccCHH----HHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 455555566666542222222232333344555556666555543321 2233445555554444444444444444
Q ss_pred H
Q 001481 419 A 419 (1071)
Q Consensus 419 A 419 (1071)
+
T Consensus 965 ~ 965 (1265)
T KOG1920|consen 965 C 965 (1265)
T ss_pred h
Confidence 4
No 328
>KOG1972 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.16 E-value=1.1e+02 Score=38.17 Aligned_cols=150 Identities=13% Similarity=0.002 Sum_probs=77.6
Q ss_pred CChhHHHHHHHHHHHHHHh--------CCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhh-
Q 001481 284 LDDIQLKNWHDYLSFAEKQ--------GDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFL- 354 (1071)
Q Consensus 284 ~~p~~~~~W~~y~~~~~~~--------g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~- 354 (1071)
..+.+-.+|..|......+ +.....+ +++..+..++....+|..||.++...-. +-+.-+.+ +....
T Consensus 717 ~s~~~~~~y~~ycqiq~~~~~~S~l~f~~~~k~r-F~e~~v~~fsrn~~~~e~wa~l~s~l~q--k~r~rl~~-~k~~~~ 792 (913)
T KOG1972|consen 717 LSLTEQSLYRSYCQIQIKHFWASNLAFYNLPKVR-FFEEGVTLFSRNAFGWELWAELESELRQ--KIRKRLSS-TKNEVD 792 (913)
T ss_pred cCchhHHHHHHHHHHHHHHHHhhhhhccccccee-eeccchhhccccchhHHHHHHHHHHHHH--HHHHHHHH-Hhhhhc
Confidence 4455666777776332221 2333444 4455577788888888888876644311 11111100 00000
Q ss_pred ccchHHHHHHHHHHHHhCCHHHHHHH-H----HHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccC
Q 001481 355 KRLPVIHLFNARYKEQIGDTSAARAA-F----PESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKF 429 (1071)
Q Consensus 355 ~~~p~i~~~~a~~e~~~g~~~~A~~~-~----~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~ 429 (1071)
..+..+|--+...+.....+..|... | .+..++..|.....|..|..++-++++.+..-++|.+|+.. .
T Consensus 793 ~~n~ai~~~~~i~e~~~~~i~~a~t~mf~n~~~si~d~~l~~~~~~WR~yl~~lskl~~~~~~~~~~tkA~~s------C 866 (913)
T KOG1972|consen 793 GRNAAIHAEQVIPETGDDQIMSANTGMFRNADRSILDEELPDENSKWRDYLEALSKLLNKERSKAASTKALDS------C 866 (913)
T ss_pred chhhhhccccccccchHHHHhHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHHHhhhhhhhHHHHHHHhhc------C
Confidence 00111222211111111112223222 2 12222335666788999999988888899999999999988 6
Q ss_pred CCcHHHHHHHHHHH
Q 001481 430 HTLPLLYVQFSRLT 443 (1071)
Q Consensus 430 p~~~~l~~~~A~~~ 443 (1071)
|..-.+++..+..+
T Consensus 867 pW~K~l~md~ie~l 880 (913)
T KOG1972|consen 867 PWAKWLEMDVIEDL 880 (913)
T ss_pred chHHHHHHHHHHhc
Confidence 66555555554443
No 329
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=85.08 E-value=1.1 Score=46.88 Aligned_cols=53 Identities=21% Similarity=0.439 Sum_probs=48.8
Q ss_pred HHhCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Q 001481 300 EKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQI 352 (1071)
Q Consensus 300 ~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~ 352 (1071)
.+.+|.+.+.++|.+|+...|....-|+.++.+.++.|+++.|...|++.+++
T Consensus 6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~l 58 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLEL 58 (287)
T ss_pred cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcC
Confidence 35688889999999999999999999999999999999999999999999987
No 330
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=84.94 E-value=56 Score=41.14 Aligned_cols=117 Identities=13% Similarity=0.043 Sum_probs=79.1
Q ss_pred cchHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCh-hh------HHHHHH-HHHHHHHcCCHHHHHHHHHHHHHHHhhhc
Q 001481 356 RLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDS-RF------IEKVTF-KANMERRLGNFVAACDTYKEALETAAEQR 427 (1071)
Q Consensus 356 ~~p~i~~~~a~~e~~~g~~~~A~~~~~~al~~~~p-~~------~~~w~~-~a~le~~~g~~~~A~~~y~~Al~~~~~~~ 427 (1071)
+.|.+-+.+++......++++|..+..++-..+.+ +. .-.|.. .+.+..-.|++++|.++.+.++..++...
T Consensus 413 ~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~ 492 (894)
T COG2909 413 STPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAA 492 (894)
T ss_pred hCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccccc
Confidence 35667777888888899999999988887532221 11 111322 23455567999999999999999864332
Q ss_pred cCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhh----CCChHHHHHHH
Q 001481 428 KFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKH----VPNCKLLLEEL 474 (1071)
Q Consensus 428 ~~p~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~~----~P~~~~lw~~~ 474 (1071)
......++...|.+.. ..|++++|+.+...+.+. ....-.+|..+
T Consensus 493 -~~~r~~~~sv~~~a~~-~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~ 541 (894)
T COG2909 493 -YRSRIVALSVLGEAAH-IRGELTQALALMQQAEQMARQHDVYHLALWSLL 541 (894)
T ss_pred -chhhhhhhhhhhHHHH-HhchHHHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 2233455666777766 899999999998888776 22344566665
No 331
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=84.33 E-value=3.8 Score=47.35 Aligned_cols=46 Identities=17% Similarity=0.257 Sum_probs=34.4
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHH
Q 001481 392 FIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLT 443 (1071)
Q Consensus 392 ~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~ 443 (1071)
...+.++.+..+...|..-.|..+|.+|+.. +..+|.+|+.+|.+.
T Consensus 334 s~eilYNcG~~~Lh~grPl~AfqCf~~av~v------fh~nPrlWLRlAEcC 379 (696)
T KOG2471|consen 334 SMEILYNCGLLYLHSGRPLLAFQCFQKAVHV------FHRNPRLWLRLAECC 379 (696)
T ss_pred chhhHHhhhHHHHhcCCcHHHHHHHHHHHHH------HhcCcHHHHHHHHHH
Confidence 3456666777777778888888888888877 677788888887764
No 332
>PRK10941 hypothetical protein; Provisional
Probab=84.13 E-value=9.5 Score=41.98 Aligned_cols=64 Identities=9% Similarity=-0.108 Sum_probs=56.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCChHHH
Q 001481 400 ANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLL 470 (1071)
Q Consensus 400 a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~~~P~~~~l 470 (1071)
-..+.+.++++.|.++.++.+.+ .|.++.-|-..|.++. ..|.+..|+.-|+..|+.||+++..
T Consensus 188 K~~~~~~~~~~~AL~~~e~ll~l------~P~dp~e~RDRGll~~-qL~c~~~A~~DL~~fl~~~P~dp~a 251 (269)
T PRK10941 188 KAALMEEKQMELALRASEALLQF------DPEDPYEIRDRGLIYA-QLDCEHVALSDLSYFVEQCPEDPIS 251 (269)
T ss_pred HHHHHHcCcHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHH-HcCCcHHHHHHHHHHHHhCCCchhH
Confidence 34566779999999999999998 8999999999999988 9999999999999999999987753
No 333
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=84.07 E-value=1.3 Score=46.40 Aligned_cols=56 Identities=21% Similarity=0.298 Sum_probs=45.2
Q ss_pred HHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001481 366 RYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALET 422 (1071)
Q Consensus 366 ~~e~~~g~~~~A~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~ 422 (1071)
......++.+.|.++|.+++ ++.|.-..-|.+.+.+..+.|+++.|.+.|++.+++
T Consensus 3 ~~~~~~~D~~aaaely~qal-~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~l 58 (287)
T COG4976 3 YMLAESGDAEAAAELYNQAL-ELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLEL 58 (287)
T ss_pred chhcccCChHHHHHHHHHHh-hcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcC
Confidence 34455677888888888888 778888888888888888888888888888888887
No 334
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=83.91 E-value=1.1e+02 Score=37.30 Aligned_cols=25 Identities=20% Similarity=0.264 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHH
Q 001481 73 YGYWRKYADHKARLCSIDKVVEVFE 97 (1071)
Q Consensus 73 ~~lW~~~a~~e~~~~~~e~A~~lfe 97 (1071)
+++|..+++.....-.++-|+..|-
T Consensus 692 prLWrllAe~Al~Kl~l~tAE~AFV 716 (1189)
T KOG2041|consen 692 PRLWRLLAEYALFKLALDTAEHAFV 716 (1189)
T ss_pred hHHHHHHHHHHHHHHhhhhHhhhhh
Confidence 4556655555544334444444443
No 335
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=83.84 E-value=42 Score=33.69 Aligned_cols=57 Identities=19% Similarity=0.189 Sum_probs=37.4
Q ss_pred HHhhCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhCCHHHHHHHHHHHhhccChh
Q 001481 333 MESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSR 391 (1071)
Q Consensus 333 l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~~A~~~~~~al~~~~p~ 391 (1071)
-...++.+++..++ .|+.+..|+.+.+.+.-+.+....|++++|+.+|+... +..|.
T Consensus 20 al~~~~~~D~e~lL-~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~-~~~~~ 76 (160)
T PF09613_consen 20 ALRLGDPDDAEALL-DALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELE-ERAPG 76 (160)
T ss_pred HHccCChHHHHHHH-HHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHh-ccCCC
Confidence 33445666666666 45555567777777777777777777777777777754 33443
No 336
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=83.80 E-value=78 Score=36.87 Aligned_cols=129 Identities=14% Similarity=0.013 Sum_probs=71.1
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHhhcCCCCCHH--HHHHH--HHHHHhhCCHHHHHHHHHHHHHHhhc--cchHHHHHHH
Q 001481 292 WHDYLSFAEKQGDFDWVVKLYERCLIPCADYPE--FWMRY--VDFMESKGGREIASYALDRATQIFLK--RLPVIHLFNA 365 (1071)
Q Consensus 292 W~~y~~~~~~~g~~~~a~~~yerAL~~~p~~~~--lW~~y--a~~l~~~g~~e~A~~il~rAl~~~~~--~~p~i~~~~a 365 (1071)
|.....++ ..++|..|..+|+.++..-+.... ++..+ +..+|...++++|.+.+++.+..... ...+.+....
T Consensus 135 ~~~a~~l~-n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l~~~~~~l~~~~ 213 (379)
T PF09670_consen 135 WRRAKELF-NRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKALNQEREGLKELV 213 (379)
T ss_pred HHHHHHHH-hcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhhHhHHHHHHHHH
Confidence 44444443 578899999999998875333333 44444 33457778889999999998764211 0001111111
Q ss_pred HHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHH
Q 001481 366 RYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERR--LGNFVAACDTYKEALETA 423 (1071)
Q Consensus 366 ~~e~~~g~~~~A~~~~~~al~~~~p~~~~~w~~~a~le~~--~g~~~~A~~~y~~Al~~~ 423 (1071)
.+......+..+........ ..+...-+...+.+.++| .|.++.|...+-|+++++
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~--~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl~ 271 (379)
T PF09670_consen 214 EVLKALESILSALEDKKQRQ--KKLYYALLADLLANAERRAAQGRYDDAVARLYRALELL 271 (379)
T ss_pred HHHHHHHhhccchhhhhccc--cccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 11111111111111111110 011344455566677776 599999999999999984
No 337
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=83.50 E-value=30 Score=36.04 Aligned_cols=78 Identities=12% Similarity=-0.025 Sum_probs=59.8
Q ss_pred CHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhhcCCHHH
Q 001481 373 DTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADN 452 (1071)
Q Consensus 373 ~~~~A~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~g~~e~ 452 (1071)
.-+.|+..|.++-..-.-+.+++-+.+|.++.+ -+.++|+.+|-+++++..++ ...+++++..+|.++. ..|+++.
T Consensus 121 ~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~k-rD~~Kt~~ll~~~L~l~~~~--~~~n~eil~sLas~~~-~~~~~e~ 196 (203)
T PF11207_consen 121 GDQEALRRFLQLEGTPELETAELQYALATYYTK-RDPEKTIQLLLRALELSNPD--DNFNPEILKSLASIYQ-KLKNYEQ 196 (203)
T ss_pred CcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhcCCC--CCCCHHHHHHHHHHHH-Hhcchhh
Confidence 446788888776422223668888888988874 58899999999999996443 2457899999999988 9999888
Q ss_pred HH
Q 001481 453 AR 454 (1071)
Q Consensus 453 Ar 454 (1071)
|.
T Consensus 197 AY 198 (203)
T PF11207_consen 197 AY 198 (203)
T ss_pred hh
Confidence 74
No 338
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=83.25 E-value=9.3 Score=42.06 Aligned_cols=50 Identities=2% Similarity=-0.017 Sum_probs=45.8
Q ss_pred CcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 001481 53 DDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQS 102 (1071)
Q Consensus 53 ~~~~~a~~vyeraL~~~P~s~~lW~~~a~~e~~~~~~e~A~~lferAL~~ 102 (1071)
+.++.+...+++.+..+|++..+|..+++.+...|+...|+..|++.-..
T Consensus 167 ~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 167 GRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred ccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 67888999999999999999999999999999999999999999876554
No 339
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=83.06 E-value=8.5 Score=41.89 Aligned_cols=54 Identities=11% Similarity=0.039 Sum_probs=31.9
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChhHHHHHHHH
Q 001481 79 YADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKR 133 (1071)
Q Consensus 79 ~a~~e~~~~~~e~A~~lferAL~~~P~s~~lW~~y~~~~~~~~~~~e~ar~l~er 133 (1071)
.+.++.+.|.+.+|..+..|++..+|.+...|..+.+.+... ||--.+.+.|+|
T Consensus 285 va~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~-gD~is~~khyer 338 (361)
T COG3947 285 VARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATL-GDEISAIKHYER 338 (361)
T ss_pred HHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHh-ccchhhhhHHHH
Confidence 344455556666666666777766666666666666666555 554334444443
No 340
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=82.65 E-value=81 Score=34.62 Aligned_cols=100 Identities=16% Similarity=0.103 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCChHHHHH--HHHHHHHHcCCCCchhh
Q 001481 412 ACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLLLE--ELIKFTMVHGGRSHISI 489 (1071)
Q Consensus 412 A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~~~P~~~~lw~--~~~~~e~~~g~~~~a~~ 489 (1071)
-.++.++|++--+.......++.++..+|..++ +.|++.+|+..|-.+ ++..... .++......|...+.
T Consensus 69 r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~-~e~~~~~A~~Hfl~~-----~~~~~~~~~~ll~~~~~~~~~~e~-- 140 (260)
T PF04190_consen 69 RKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLW-KEGNYYEAERHFLLG-----TDPSAFAYVMLLEEWSTKGYPSEA-- 140 (260)
T ss_dssp HHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHH-HTT-HHHHHHHHHTS------HHHHHHHHHHHHHHHHHTSS--H--
T ss_pred HHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHH-hhccHHHHHHHHHhc-----CChhHHHHHHHHHHHHHhcCCcch--
Confidence 445556666664222234468899999999999 889999999887655 2332221 233333445555544
Q ss_pred HHHHHHHhhccCCcccccCChhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 001481 490 VDAVISNALYSRPDVLKVFSLEDVEDISSLYLQQFLDLCGTIHDIRNAWNQHIKL 544 (1071)
Q Consensus 490 ~r~l~e~Al~~~~d~~~~l~~~~~~~lw~~~l~~~e~~~G~~e~a~~~~~ra~~~ 544 (1071)
.-.+-||+- .| ...|++..|..++...++.
T Consensus 141 -dlfi~RaVL-------------------~y-----L~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 141 -DLFIARAVL-------------------QY-----LCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp -HHHHHHHHH-------------------HH-----HHTTBHHHHHHHHHHHHHH
T ss_pred -hHHHHHHHH-------------------HH-----HHhcCHHHHHHHHHHHHHH
Confidence 244444441 12 2457777777777666665
No 341
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=82.25 E-value=7.2 Score=35.45 Aligned_cols=60 Identities=18% Similarity=0.276 Sum_probs=43.3
Q ss_pred HcCCHHHHHHHHHHHHHHHhhhccCC---CcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCC
Q 001481 405 RLGNFVAACDTYKEALETAAEQRKFH---TLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVP 465 (1071)
Q Consensus 405 ~~g~~~~A~~~y~~Al~~~~~~~~~p---~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~~~P 465 (1071)
+.|++.+|.+.+.+..+......... ......+.+|.+.. ..|+.++|...+++|++...
T Consensus 10 ~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~-~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 10 RSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHR-RFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred HcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHH
Confidence 46788888777777777654332222 23345677888877 89999999999999998754
No 342
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=81.53 E-value=12 Score=34.01 Aligned_cols=34 Identities=26% Similarity=0.373 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhh
Q 001481 393 IEKVTFKANMERRLGNFVAACDTYKEALETAAEQ 426 (1071)
Q Consensus 393 ~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~ 426 (1071)
..+++..+.+....|+.++|...+++|+++....
T Consensus 41 ~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~ 74 (94)
T PF12862_consen 41 AYALLNLAELHRRFGHYEEALQALEEAIRLAREN 74 (94)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 4456777888888999999999999999986543
No 343
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=81.34 E-value=9.3 Score=42.89 Aligned_cols=86 Identities=8% Similarity=0.154 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 001481 74 GYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIE 153 (1071)
Q Consensus 74 ~lW~~~a~~e~~~~~~e~A~~lferAL~~~P~s~~lW~~y~~~~~~~~~~~e~ar~l~erAL~~~~~~~~s~~lW~~yi~ 153 (1071)
.+|....+-.....-.+++..+|..||.+.. .- .-.+++..+++..++.+|.--.....|+..++
T Consensus 84 sFw~tm~eEde~~~~t~kvn~tlsECl~Li~--------------eG-cp~eei~~~L~~li~~IP~A~K~aKYWIC~Ar 148 (353)
T PF15297_consen 84 SFWTTMAEEDEQRLFTEKVNKTLSECLNLIE--------------EG-CPKEEILATLSDLIKNIPDAKKLAKYWICLAR 148 (353)
T ss_pred ccccchhhhhhHHHHHHHHHHHHHHHHHHHH--------------cC-CCHHHHHHHHHHHHhcCchHHHHHHHHHHHHH
Confidence 4888887654443344677778888777631 11 23467778888888777754334689999999
Q ss_pred HHHHccCHHHHHHHHHHHhcc
Q 001481 154 FEISQQRWSSLAQIFVQTLRF 174 (1071)
Q Consensus 154 fe~~~~~~~~a~~iy~ral~~ 174 (1071)
++...+.++.++.||+.||..
T Consensus 149 l~~~~~~~e~vi~iyEeAi~a 169 (353)
T PF15297_consen 149 LEPRTGPIEDVIAIYEEAILA 169 (353)
T ss_pred HHhhcCCHHHHHHHHHHHHHc
Confidence 999999999999999999863
No 344
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=81.32 E-value=60 Score=36.02 Aligned_cols=150 Identities=11% Similarity=-0.101 Sum_probs=90.3
Q ss_pred CCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhh----CCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHH----hCCH
Q 001481 303 GDFDWVVKLYERCLIPCADYPEFWMRYVDFMESK----GGREIASYALDRATQIFLKRLPVIHLFNARYKEQ----IGDT 374 (1071)
Q Consensus 303 g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~----g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~----~g~~ 374 (1071)
+++..+...|+++-.. .....-..++..+... .+...|...|..+.+. ..+..-+.++.++.. ..++
T Consensus 55 ~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~---g~~~a~~~lg~~~~~G~gv~~d~ 129 (292)
T COG0790 55 PDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAAD---GLAEALFNLGLMYANGRGVPLDL 129 (292)
T ss_pred ccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhc---ccHHHHHhHHHHHhcCCCcccCH
Confidence 3455555556555431 1112333333333322 2367788888866643 455566667776654 3378
Q ss_pred HHHHHHHHHHhhccChhhHHHHHHHHHHHHHc-----C--CHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhh-
Q 001481 375 SAARAAFPESYIDSDSRFIEKVTFKANMERRL-----G--NFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTT- 446 (1071)
Q Consensus 375 ~~A~~~~~~al~~~~p~~~~~w~~~a~le~~~-----g--~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~- 446 (1071)
.+|...|.++.+.-.+.-....+.++.++..- - +...|+..|.+|... . .+.....+|.++..-
T Consensus 130 ~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~------~--~~~a~~~lg~~y~~G~ 201 (292)
T COG0790 130 VKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAEL------G--NPDAQLLLGRMYEKGL 201 (292)
T ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHh------c--CHHHHHHHHHHHHcCC
Confidence 89999999997432221111144444443321 1 334789999998876 2 677788888887633
Q ss_pred --cCCHHHHHHHHHHHHhhCC
Q 001481 447 --TGSADNARDILIDGIKHVP 465 (1071)
Q Consensus 447 --~g~~e~Ar~i~e~al~~~P 465 (1071)
..++.+|...|.++.+.-.
T Consensus 202 Gv~~d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 202 GVPRDLKKAFRWYKKAAEQGD 222 (292)
T ss_pred CCCcCHHHHHHHHHHHHHCCC
Confidence 3488999999999987766
No 345
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=80.77 E-value=85 Score=34.93 Aligned_cols=82 Identities=12% Similarity=-0.022 Sum_probs=53.8
Q ss_pred CHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhc--------------------cch----H
Q 001481 304 DFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLK--------------------RLP----V 359 (1071)
Q Consensus 304 ~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~--------------------~~p----~ 359 (1071)
+...-+..-..||..+|++..+++.++. ++...+-+|.++|++|++.... ++. -
T Consensus 199 np~~RI~~A~~ALeIN~eCA~AyvLLAE--EEa~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~~rRDtnvl~Y 276 (556)
T KOG3807|consen 199 NPPARIKAAYQALEINNECATAYVLLAE--EEATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQLRRDTNVLVY 276 (556)
T ss_pred CcHHHHHHHHHHHhcCchhhhHHHhhhh--hhhhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhhhhcccchhhH
Confidence 3344445556788889999888887775 3344577888899888874110 011 1
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhhc
Q 001481 360 IHLFNARYKEQIGDTSAARAAFPESYID 387 (1071)
Q Consensus 360 i~~~~a~~e~~~g~~~~A~~~~~~al~~ 387 (1071)
|...+|.+..+.|+..+|.+.|....++
T Consensus 277 IKRRLAMCARklGrlrEA~K~~RDL~ke 304 (556)
T KOG3807|consen 277 IKRRLAMCARKLGRLREAVKIMRDLMKE 304 (556)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhh
Confidence 2223456667788888998888877654
No 346
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=80.75 E-value=1.6e+02 Score=36.75 Aligned_cols=112 Identities=9% Similarity=0.062 Sum_probs=70.6
Q ss_pred hHHHHHHHHhCC----CCHHHHHHHHHHHH-hcCCCcHHHHHHHHHHHHHHCCC--CHHH----HHHHHHHHHHhCCHHH
Q 001481 23 KQGLEEFIAEGS----LDFDEWTSLLSEIE-NSCPDDIEMIGLVYDSFLAEFPL--CYGY----WRKYADHKARLCSIDK 91 (1071)
Q Consensus 23 ~~~le~al~~nP----~d~~~W~~li~~~~-~~~~~~~~~a~~vyeraL~~~P~--s~~l----W~~~a~~e~~~~~~e~ 91 (1071)
+..|+..++..+ ......++|+..+- .. .+++.|+..++|++...-. -.++ =..++++..+.+ ...
T Consensus 41 i~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT--~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~-~~~ 117 (608)
T PF10345_consen 41 IKCLEAVLKQFKLSPRQEARVRLRLASILLEET--ENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTN-PKA 117 (608)
T ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcC-HHH
Confidence 345565654333 24566777787663 44 7899999999999766532 2211 112233444444 444
Q ss_pred HHHHHHHHHHhcCC-CHHHHHHHHHHHHh-----hCCChhHHHHHHHHHHHhc
Q 001481 92 VVEVFERAVQSATY-SVDVWFHYCSLSMS-----TFEDPNDVRRLFKRALSFV 138 (1071)
Q Consensus 92 A~~lferAL~~~P~-s~~lW~~y~~~~~~-----~~~~~e~ar~l~erAL~~~ 138 (1071)
|...+.+++..+-. ....|.-.++|+.- . +++..|...+++.....
T Consensus 118 a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~-~d~~~Al~~L~~~~~~a 169 (608)
T PF10345_consen 118 ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQH-KDYNAALENLQSIAQLA 169 (608)
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHh
Confidence 99999999998643 34567777777622 2 57888888888777654
No 347
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=80.65 E-value=67 Score=32.32 Aligned_cols=65 Identities=18% Similarity=0.085 Sum_probs=33.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCh
Q 001481 396 VTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNC 467 (1071)
Q Consensus 396 w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~~~P~~ 467 (1071)
.+..+.+-.+.++++.+..++....-+ .|..+.+-+.-|.+.. ..|++.+|+.+|+.....-|..
T Consensus 13 Lie~~~~al~~~~~~D~e~lL~ALrvL------RP~~~e~~~~~~~l~i-~r~~w~dA~rlLr~l~~~~~~~ 77 (160)
T PF09613_consen 13 LIEVLSVALRLGDPDDAEALLDALRVL------RPEFPELDLFDGWLHI-VRGDWDDALRLLRELEERAPGF 77 (160)
T ss_pred HHHHHHHHHccCChHHHHHHHHHHHHh------CCCchHHHHHHHHHHH-HhCCHHHHHHHHHHHhccCCCC
Confidence 333333444455566666665554444 4555555444444444 5666666666666655444433
No 348
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=80.63 E-value=1.7e+02 Score=37.08 Aligned_cols=96 Identities=5% Similarity=-0.042 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHhhCCChhHHHHHHHHHHH-hcCCCCCchHHHH
Q 001481 74 GYWRKYADHKARLCSIDKVVEVFERAVQSAT---YSVDVWFHYCSLSMSTFEDPNDVRRLFKRALS-FVGKDYLCHTMWD 149 (1071)
Q Consensus 74 ~lW~~~a~~e~~~~~~e~A~~lferAL~~~P---~s~~lW~~y~~~~~~~~~~~e~ar~l~erAL~-~~~~~~~s~~lW~ 149 (1071)
.++-.+++.....+..+.|..++++....+- .+-.......+++.+. +....+..++.+--+ ..+.......+|.
T Consensus 492 g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~-~~l~dl~tiL~e~ks~a~n~~~~a~~~f~ 570 (1088)
T KOG4318|consen 492 GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRL-AILYDLSTILYEDKSSAENEPLVAIILFP 570 (1088)
T ss_pred hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHh-HHHHHHHHHHhhhhHHhhCCchHHHHHHH
Confidence 5666677776666677777777765544321 1112333444444444 444444444443332 2232222345666
Q ss_pred HHHHHHHHccCHHHHHHHHHHH
Q 001481 150 KYIEFEISQQRWSSLAQIFVQT 171 (1071)
Q Consensus 150 ~yi~fe~~~~~~~~a~~iy~ra 171 (1071)
.|...-. .++.+.++++++-.
T Consensus 571 ~lns~a~-agqqe~Lkkl~d~l 591 (1088)
T KOG4318|consen 571 LLNSGAP-AGQQEKLKKLADIL 591 (1088)
T ss_pred HHhhhhh-ccCHHHHHHHHHHH
Confidence 6554332 34566666665544
No 349
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=80.24 E-value=17 Score=42.09 Aligned_cols=133 Identities=11% Similarity=-0.032 Sum_probs=79.4
Q ss_pred HhhCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHH
Q 001481 334 ESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAAC 413 (1071)
Q Consensus 334 ~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~~A~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~ 413 (1071)
+..|++-.|-.-+..+++. .+..|..-...+.+.+..|.|+.|...+.-+-+.+.... .+..-+..-...+|..+.|.
T Consensus 300 ~~~gd~~aas~~~~~~lr~-~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~-~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 300 LADGDIIAASQQLFAALRN-QQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTD-STLRCRLRSLHGLARWREAL 377 (831)
T ss_pred hhccCHHHHHHHHHHHHHh-CCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCc-hHHHHHHHhhhchhhHHHHH
Confidence 4457776666555566654 567787777778888889999988887765432222211 11111222234456667766
Q ss_pred HHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCChHHHHHHHH
Q 001481 414 DTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLLLEELI 475 (1071)
Q Consensus 414 ~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~~~P~~~~lw~~~~ 475 (1071)
.+-+..+.. ...++++.--.|-- ...+|-+++|...|++.+.++|....=|.+++
T Consensus 378 s~a~~~l~~------eie~~ei~~iaa~s-a~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~~ 432 (831)
T PRK15180 378 STAEMMLSN------EIEDEEVLTVAAGS-ADALQLFDKSYHYWKRVLLLNPETQSGWVNFL 432 (831)
T ss_pred HHHHHHhcc------ccCChhheeeeccc-HHHHhHHHHHHHHHHHHhccCChhcccceeee
Confidence 666555543 33445443222222 22678899999999999998887555555443
No 350
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=79.48 E-value=1.1e+02 Score=34.26 Aligned_cols=139 Identities=18% Similarity=0.146 Sum_probs=91.5
Q ss_pred CChhHHHHHHHHHHHHHHhCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhccch-----
Q 001481 284 LDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLP----- 358 (1071)
Q Consensus 284 ~~p~~~~~W~~y~~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p----- 358 (1071)
+.|-..+.-..|-+.+ ..++...+....|+.+..+|...++-+..+..+.+.| ++.+..++...+..|..+.|
T Consensus 95 L~~p~ad~~~~~~~~~-~~~~~~~Ll~~~E~sl~~~pfWLDgq~~~~qal~~lG-~~~~a~aI~~el~~fL~RlP~L~~L 172 (301)
T TIGR03362 95 LAPPPADRVADYQELL-AQADWAALLQRVEQSLSLAPFWLDGQRLSAQALERLG-YAAVAQAIRDELAAFLERLPGLLEL 172 (301)
T ss_pred CCCCCHHHHHHHHHHH-hCCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHhCcChhhc
Confidence 3343445555555555 5667788899999999889988888888888899988 57777777777766654443
Q ss_pred -------------HHHHHH----------------------------HHHHHHhCCHHHHHHHHHHHhhcc-Ch-hhHHH
Q 001481 359 -------------VIHLFN----------------------------ARYKEQIGDTSAARAAFPESYIDS-DS-RFIEK 395 (1071)
Q Consensus 359 -------------~i~~~~----------------------------a~~e~~~g~~~~A~~~~~~al~~~-~p-~~~~~ 395 (1071)
..|+.- +.-+...+.+++|+..++..+... .+ +-...
T Consensus 173 ~F~DGtPFad~~T~~WL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~l~~~~gl~~Al~~L~~~~~~~~s~R~rf~~ 252 (301)
T TIGR03362 173 KFSDGTPFADDETRAWLAQHATRSNAASVAPVAEVGEESDWEELREEARALAAEGGLEAALQRLQQRLAQAREPRERFHW 252 (301)
T ss_pred ccCCCCCCCCHHHHHHHHhcccccccccccccccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCCChHHHHHH
Confidence 234421 111234556667777766544211 11 23334
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q 001481 396 VTFKANMERRLGNFVAACDTYKEALETAA 424 (1071)
Q Consensus 396 w~~~a~le~~~g~~~~A~~~y~~Al~~~~ 424 (1071)
.+..+++....|..+-|..+|....+.+.
T Consensus 253 rL~~A~l~~~~g~~~lA~~ll~~L~~~~~ 281 (301)
T TIGR03362 253 RLLLARLLEQAGKAELAQQLYAALDQQIQ 281 (301)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 55667788888999999999998887753
No 351
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=79.47 E-value=3.2 Score=27.70 Aligned_cols=30 Identities=17% Similarity=0.274 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhcC
Q 001481 75 YWRKYADHKARLCSIDKVVEVFERAVQSAT 104 (1071)
Q Consensus 75 lW~~~a~~e~~~~~~e~A~~lferAL~~~P 104 (1071)
.|..++......++++.|...|.++++..|
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 455556666666666666666666666554
No 352
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=79.33 E-value=19 Score=32.53 Aligned_cols=65 Identities=12% Similarity=0.116 Sum_probs=49.1
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhcC
Q 001481 60 LVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVG 139 (1071)
Q Consensus 60 ~vyeraL~~~P~s~~lW~~~a~~e~~~~~~e~A~~lferAL~~~P~s~~lW~~y~~~~~~~~~~~e~ar~l~erAL~~~~ 139 (1071)
..+++.+..+|.+......++..+...|+++.|.+.|-..|+.++.. +-+.+|+.+=..+..+|
T Consensus 9 ~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~----------------~~~~ar~~ll~~f~~lg 72 (90)
T PF14561_consen 9 AALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY----------------EDDAARKRLLDIFELLG 72 (90)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC----------------CCCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc----------------cccHHHHHHHHHHHHcC
Confidence 56788999999999999999999999999999999998888886533 22556777666666666
Q ss_pred C
Q 001481 140 K 140 (1071)
Q Consensus 140 ~ 140 (1071)
.
T Consensus 73 ~ 73 (90)
T PF14561_consen 73 P 73 (90)
T ss_dssp T
T ss_pred C
Confidence 5
No 353
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=78.41 E-value=73 Score=34.90 Aligned_cols=74 Identities=8% Similarity=-0.007 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhC---CChHHHHHHHHHHHHHcCCC
Q 001481 410 VAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHV---PNCKLLLEELIKFTMVHGGR 484 (1071)
Q Consensus 410 ~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~~~---P~~~~lw~~~~~~e~~~g~~ 484 (1071)
++-++-++++|.....+++...-.++|.+.|.++. ..+|.+.+.+...+.++.. .--.++++.-+++-...|+-
T Consensus 92 eeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~-qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~ 168 (412)
T COG5187 92 EEKIEELDERIREKEEDNGETEGSEADRNIAEYYC-QIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDR 168 (412)
T ss_pred HHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH-HHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccH
Confidence 34445555566554444444456789999999988 8899988888877777643 23456666666666655653
No 354
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.28 E-value=36 Score=40.77 Aligned_cols=25 Identities=12% Similarity=0.001 Sum_probs=12.2
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHh
Q 001481 361 HLFNARYKEQIGDTSAARAAFPESY 385 (1071)
Q Consensus 361 ~~~~a~~e~~~g~~~~A~~~~~~al 385 (1071)
|-.++++....+++..|.++|.++.
T Consensus 669 w~~Lg~~al~~~~l~lA~EC~~~a~ 693 (794)
T KOG0276|consen 669 WRQLGDAALSAGELPLASECFLRAR 693 (794)
T ss_pred HHHHHHHHhhcccchhHHHHHHhhc
Confidence 4444444444555555555554443
No 355
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=78.25 E-value=26 Score=45.19 Aligned_cols=69 Identities=17% Similarity=0.172 Sum_probs=42.2
Q ss_pred CHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCChH-HHHHHHHHHHHHc
Q 001481 408 NFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCK-LLLEELIKFTMVH 481 (1071)
Q Consensus 408 ~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~~~P~~~-~lw~~~~~~e~~~ 481 (1071)
.+.+++++|..+... ........+|..||.+++ ..+.+.+|.++|..|++...... .+-..|..|....
T Consensus 93 ~~~d~~d~f~~m~~k----gIg~~lalfYe~~a~~lE-~k~~~keA~~v~q~Giq~~aeP~~rL~~~~~~F~~r~ 162 (974)
T KOG1166|consen 93 ELQDAEDFFSYLENK----GIGTTLALFYEAYAKHLE-RKEYFKEAKEVFQLGIQNKAEPLERLLRQYSNFQQRL 162 (974)
T ss_pred HHhhHHHHHHHHHhc----cccchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Confidence 356666666665443 223455667777777777 77778888888888877654433 3444455554443
No 356
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=78.18 E-value=9.1 Score=42.95 Aligned_cols=85 Identities=16% Similarity=0.205 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhCCHHHHHHHHHHHhhcc--ChhhHHHHHHHH
Q 001481 323 PEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDS--DSRFIEKVTFKA 400 (1071)
Q Consensus 323 ~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~~A~~~~~~al~~~--~p~~~~~w~~~a 400 (1071)
..+|-.++.--+...-.+....+|..++.++...+| -++.+.++...|+.+ ...++..|+-+|
T Consensus 83 ~sFw~tm~eEde~~~~t~kvn~tlsECl~Li~eGcp---------------~eei~~~L~~li~~IP~A~K~aKYWIC~A 147 (353)
T PF15297_consen 83 GSFWTTMAEEDEQRLFTEKVNKTLSECLNLIEEGCP---------------KEEILATLSDLIKNIPDAKKLAKYWICLA 147 (353)
T ss_pred cccccchhhhhhHHHHHHHHHHHHHHHHHHHHcCCC---------------HHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence 356776654322222123333455555554333333 245666666666332 125688899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHH
Q 001481 401 NMERRLGNFVAACDTYKEALET 422 (1071)
Q Consensus 401 ~le~~~g~~~~A~~~y~~Al~~ 422 (1071)
.++.+.|.++.++.+|++|+..
T Consensus 148 rl~~~~~~~e~vi~iyEeAi~a 169 (353)
T PF15297_consen 148 RLEPRTGPIEDVIAIYEEAILA 169 (353)
T ss_pred HHHhhcCCHHHHHHHHHHHHHc
Confidence 9999999999999999999986
No 357
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=77.75 E-value=12 Score=39.03 Aligned_cols=80 Identities=15% Similarity=0.018 Sum_probs=41.1
Q ss_pred HHHhhCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhCCHHHHHHHHHHHhhccChh---hHHHHHHHHHHHHHcCC
Q 001481 332 FMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSR---FIEKVTFKANMERRLGN 408 (1071)
Q Consensus 332 ~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~~A~~~~~~al~~~~p~---~~~~w~~~a~le~~~g~ 408 (1071)
|+|...+-+.|+..|-++-..-.=..|.+-+.+|.|+. ..+.++|+.+|-++++...++ +++++..++.+..+.|+
T Consensus 115 y~Wsr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~ 193 (203)
T PF11207_consen 115 YHWSRFGDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKN 193 (203)
T ss_pred HHhhccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc
Confidence 44444334555555544322100123455556666654 335566666666666322222 35566666666666666
Q ss_pred HHHH
Q 001481 409 FVAA 412 (1071)
Q Consensus 409 ~~~A 412 (1071)
++.|
T Consensus 194 ~e~A 197 (203)
T PF11207_consen 194 YEQA 197 (203)
T ss_pred hhhh
Confidence 6554
No 358
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=77.72 E-value=28 Score=32.98 Aligned_cols=85 Identities=14% Similarity=0.084 Sum_probs=58.9
Q ss_pred HhCCHHHHHHHHHHhhcC---CC---------CCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhccc------hHHHH
Q 001481 301 KQGDFDWVVKLYERCLIP---CA---------DYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRL------PVIHL 362 (1071)
Q Consensus 301 ~~g~~~~a~~~yerAL~~---~p---------~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~------p~i~~ 362 (1071)
..|-+++|..-|++|+.. .| .+.-++--++..+...|++++++...++|+..|+++- -.+|+
T Consensus 21 ~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWI 100 (144)
T PF12968_consen 21 QDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWI 100 (144)
T ss_dssp HHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHH
Confidence 357788888888888852 12 1223344456678889999999999999999876532 24666
Q ss_pred HH----HHHHHHhCCHHHHHHHHHHHh
Q 001481 363 FN----ARYKEQIGDTSAARAAFPESY 385 (1071)
Q Consensus 363 ~~----a~~e~~~g~~~~A~~~~~~al 385 (1071)
.. +..+...|+.++|...|..+.
T Consensus 101 aaVfsra~Al~~~Gr~~eA~~~fr~ag 127 (144)
T PF12968_consen 101 AAVFSRAVALEGLGRKEEALKEFRMAG 127 (144)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 53 445778999999999999886
No 359
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=76.86 E-value=2.2e+02 Score=36.20 Aligned_cols=231 Identities=13% Similarity=0.004 Sum_probs=124.7
Q ss_pred HhCCHHHHHHHHHHhhcCCCC-----CHHH---HH-HHHHHHHhhCCHHHHHHHHHHHHHHhhccch-----HHHHHHHH
Q 001481 301 KQGDFDWVVKLYERCLIPCAD-----YPEF---WM-RYVDFMESKGGREIASYALDRATQIFLKRLP-----VIHLFNAR 366 (1071)
Q Consensus 301 ~~g~~~~a~~~yerAL~~~p~-----~~~l---W~-~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p-----~i~~~~a~ 366 (1071)
...++++|..+..++...-+. ..++ |. -.+.+....|++++|.++.++++.. .+... .+....+.
T Consensus 427 s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~-L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 427 SQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQ-LPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-cccccchhhhhhhhhhhH
Confidence 356677777666666543222 1222 22 2355666778999999999999986 33221 23344455
Q ss_pred HHHHhCCHHHHHHHHHHHhh---ccChhhHHHHHHHH--HHHHHcCCHHHHHHHHHHHHHHHhhh--ccCCCc---HHHH
Q 001481 367 YKEQIGDTSAARAAFPESYI---DSDSRFIEKVTFKA--NMERRLGNFVAACDTYKEALETAAEQ--RKFHTL---PLLY 436 (1071)
Q Consensus 367 ~e~~~g~~~~A~~~~~~al~---~~~p~~~~~w~~~a--~le~~~g~~~~A~~~y~~Al~~~~~~--~~~p~~---~~l~ 436 (1071)
...-.|++++|+.+...+.+ ..+.-+..+|..+. .+....| +.++..-+++...+... ...+.. ..++
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qG--q~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQG--QVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 66778999999999888762 12444566677663 3455567 33333333333222111 001111 1222
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHhhCCChHHHHH---HHHHHHHHcCCCCchhhHHHHHHHhhccCCcccccCChhhH
Q 001481 437 VQFSRLTYTTTGSADNARDILIDGIKHVPNCKLLLE---ELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDV 513 (1071)
Q Consensus 437 ~~~A~~~~~~~g~~e~Ar~i~e~al~~~P~~~~lw~---~~~~~e~~~g~~~~a~~~r~l~e~Al~~~~d~~~~l~~~~~ 513 (1071)
...........+...+||.-++-+....|.....|. .+++++...|+.+++.....-+++.... + .-+....
T Consensus 584 ~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~-~----~~~~~~~ 658 (894)
T COG2909 584 AQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLN-G----QYHVDYL 658 (894)
T ss_pred HHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC-C----CCCchHH
Confidence 222222232345566788888888777776655443 5677888889988875222222332221 1 1122233
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 001481 514 EDISSLYLQQFLDLCGTIHDIRNAWNQ 540 (1071)
Q Consensus 514 ~~lw~~~l~~~e~~~G~~e~a~~~~~r 540 (1071)
..+...-+ .+=..-|+.+.+.....+
T Consensus 659 a~~~~v~~-~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 659 AAAYKVKL-ILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHHHhhH-HHhcccCCHHHHHHHHHh
Confidence 33333333 333466777777666555
No 360
>PF03154 Atrophin-1: Atrophin-1 family; InterPro: IPR002951 Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA (OMIM:125370) is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins [, ]. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity [].. This entry includes Atrophin-1 and related proteins.
Probab=76.27 E-value=1.1e+02 Score=38.90 Aligned_cols=95 Identities=19% Similarity=0.258 Sum_probs=44.9
Q ss_pred CCccccccccccccccccccCCccccc----ccCCCcchh--cccccccCCccchhhhhhhhhhcccccchhhhhccchh
Q 001481 624 ENHDIRSDGAEVDILLSGEADSSSQDR----MQQVPPEAA--EQHSQDACDPEVLSLDLAHQVTNENETVQASEAFSEED 697 (1071)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 697 (1071)
-|-|+||.||.-..-.|--..+.-+|. -.-+++|+. .++.|-.-|..++..|---..+....-+ +..+.-+
T Consensus 35 ~~e~~rs~gr~sp~~~stss~d~k~e~~~~~~kk~kee~~~~~k~~k~~r~~~~~~~~~~~~~~~k~~k~---~~~~~p~ 111 (982)
T PF03154_consen 35 TNEDLRSSGRASPSAASTSSSDSKAESSKKTNKKIKEEASSPLKSSKRQREKPASESEEPERAAPKKSKT---QELSRPN 111 (982)
T ss_pred chhhhcccCCCCCCccccccccccccccccccccccccccccCccccccccccccccccccccccccCCc---ccCCCCC
Confidence 367888888876666665333322332 233444444 3555544444444433311111111111 2333333
Q ss_pred hhh-hhhccccccCCCCCcccCccCCCCC
Q 001481 698 DVQ-REYEHESKKDLKPLSLEGLSLDPGG 725 (1071)
Q Consensus 698 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 725 (1071)
+-. .|+|+|-+.| |+|+=|+|--+
T Consensus 112 sps~~e~e~e~e~e----s~d~rs~nd~g 136 (982)
T PF03154_consen 112 SPSESEGEGEGEGE----SSDGRSVNDDG 136 (982)
T ss_pred CCccccccccCccc----ccccccccccC
Confidence 322 4555555444 66666766555
No 361
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=75.91 E-value=1.3e+02 Score=36.24 Aligned_cols=38 Identities=18% Similarity=0.231 Sum_probs=28.4
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHhhCCChHHHHHHHHHH
Q 001481 439 FSRLTYTTTGSADNARDILIDGIKHVPNCKLLLEELIKF 477 (1071)
Q Consensus 439 ~A~~~~~~~g~~e~Ar~i~e~al~~~P~~~~lw~~~~~~ 477 (1071)
+++++. ..|...++....++++...|.+..+...++..
T Consensus 148 ~~~~~~-~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~ 185 (620)
T COG3914 148 LGRYLK-LLGRTAEAELALERAVDLLPKYPRVLGALMTA 185 (620)
T ss_pred HHHHHH-HhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence 466665 78888888888999999888877665555544
No 362
>PRK10941 hypothetical protein; Provisional
Probab=75.86 E-value=16 Score=40.13 Aligned_cols=56 Identities=13% Similarity=-0.092 Sum_probs=30.9
Q ss_pred CcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcCCCHH
Q 001481 53 DDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVD 108 (1071)
Q Consensus 53 ~~~~~a~~vyeraL~~~P~s~~lW~~~a~~e~~~~~~e~A~~lferAL~~~P~s~~ 108 (1071)
+++++|.++.++++...|+++..|..-+-++.+.+-+..|+.-|+..|+.||.+++
T Consensus 195 ~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~ 250 (269)
T PRK10941 195 KQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPI 250 (269)
T ss_pred CcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchh
Confidence 45555555555555555555555555555555555555555555555555555544
No 363
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=75.30 E-value=1.1e+02 Score=33.45 Aligned_cols=143 Identities=12% Similarity=-0.086 Sum_probs=73.1
Q ss_pred CCCCHHHHHHHHHHHH--hhCCHHHHHHHHHHHHHHhhccc-----hHHHHHHHHHHHHhCCHHHHHHHHHHHhhcc--C
Q 001481 319 CADYPEFWMRYVDFME--SKGGREIASYALDRATQIFLKRL-----PVIHLFNARYKEQIGDTSAARAAFPESYIDS--D 389 (1071)
Q Consensus 319 ~p~~~~lW~~ya~~l~--~~g~~e~A~~il~rAl~~~~~~~-----p~i~~~~a~~e~~~g~~~~A~~~~~~al~~~--~ 389 (1071)
+|+....|+.+-.-.. -..+.++-++-|+++++-....+ ..+|...|+++...++.+.+.+.+.+.+... .
T Consensus 69 n~kt~a~~ikfD~~~~n~l~kkneeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~st 148 (412)
T COG5187 69 NPKTSASVIKFDRGRMNTLLKKNEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMST 148 (412)
T ss_pred CCcccchheehhhHHHHHHHHhhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhc
Confidence 5666666766533211 11223444455555544311112 2688889999999999888877766665311 1
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHH----HHHHHHHHHHhhcCCHHHHHHHHHHHHhhCC
Q 001481 390 SRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPL----LYVQFSRLTYTTTGSADNARDILIDGIKHVP 465 (1071)
Q Consensus 390 p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~----l~~~~A~~~~~~~g~~e~Ar~i~e~al~~~P 465 (1071)
.-..++++..+.+-.-.|+..-..+.++.+-.++. ...+|+ +-..+|.+.. ...++.+|-.++-..+..+.
T Consensus 149 g~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iE----kGgDWeRrNRyK~Y~Gi~~m-~~RnFkeAa~Ll~d~l~tF~ 223 (412)
T COG5187 149 GLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIE----KGGDWERRNRYKVYKGIFKM-MRRNFKEAAILLSDILPTFE 223 (412)
T ss_pred ccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHH----hCCCHHhhhhHHHHHHHHHH-HHHhhHHHHHHHHHHhcccc
Confidence 11244455545444444443322222222222211 112221 2223344444 67788888888888876665
Q ss_pred C
Q 001481 466 N 466 (1071)
Q Consensus 466 ~ 466 (1071)
.
T Consensus 224 S 224 (412)
T COG5187 224 S 224 (412)
T ss_pred c
Confidence 4
No 364
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=74.84 E-value=15 Score=29.51 Aligned_cols=33 Identities=15% Similarity=0.116 Sum_probs=25.1
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHhhCCChHHHH
Q 001481 438 QFSRLTYTTTGSADNARDILIDGIKHVPNCKLLL 471 (1071)
Q Consensus 438 ~~A~~~~~~~g~~e~Ar~i~e~al~~~P~~~~lw 471 (1071)
.+|...+ +.|++++|+...+.+|+..|++...-
T Consensus 6 ~lAig~y-kl~~Y~~A~~~~~~lL~~eP~N~Qa~ 38 (53)
T PF14853_consen 6 YLAIGHY-KLGEYEKARRYCDALLEIEPDNRQAQ 38 (53)
T ss_dssp HHHHHHH-HTT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred HHHHHHH-HhhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 3344445 89999999999999999999987643
No 365
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.12 E-value=1.9e+02 Score=34.16 Aligned_cols=465 Identities=12% Similarity=0.075 Sum_probs=225.1
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHh-CCHHHHHHHHHHHHHh---cCCCHHHH
Q 001481 38 DEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCY---GYWRKYADHKARL-CSIDKVVEVFERAVQS---ATYSVDVW 110 (1071)
Q Consensus 38 ~~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P~s~---~lW~~~a~~e~~~-~~~e~A~~lferAL~~---~P~s~~lW 110 (1071)
.+.+.+++++++..|.++.+.++.++..+..-|-+. ..-+.++.+.+.. ++++.|+.-+|+|... .|...++=
T Consensus 8 ~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvK 87 (629)
T KOG2300|consen 8 EALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVK 87 (629)
T ss_pred HHHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhh
Confidence 344567788888755588888888877776665442 3344445544443 6899999999999876 57777776
Q ss_pred HHHHHHHHhhC----CChhHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHH-----ccCHHHHHHHHHHHhccCCccHHH
Q 001481 111 FHYCSLSMSTF----EDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEIS-----QQRWSSLAQIFVQTLRFPSKKLHH 181 (1071)
Q Consensus 111 ~~y~~~~~~~~----~~~e~ar~l~erAL~~~~~~~~s~~lW~~yi~fe~~-----~~~~~~a~~iy~ral~~p~~~l~~ 181 (1071)
..-+.++-... ..+.-++.++.+|+...-. ...|..-+.|-.. ..++..+..++.-.-........
T Consensus 88 f~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~----~p~wsckllfQLaql~~idkD~~sA~elLavga~sAd~~~~- 162 (629)
T KOG2300|consen 88 FQAASLLAHLHHQLAQSFPPAKALLRKAIELSQS----VPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESADHICF- 162 (629)
T ss_pred hHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcC----CchhhHHHHHHHHHHHhhhccchhHHHHHhccccccchhhh-
Confidence 66677765432 3677899999999987542 2467665555443 23344444332111111111111
Q ss_pred HHHHHHHHHHhHHHh---hhhhchhhHHHHHHHhhcCCccCCcccchhhHHHhhhcCcchhHHHHHHHHHHHHHHHHHHH
Q 001481 182 YYDSFKKLAGAWKEE---LECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYK 258 (1071)
Q Consensus 182 ~~~~~~~~~~~~~e~---l~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~i~~~~d~~~~~~~a~~l~~~~~~~~~~y~ 258 (1071)
.|.+.+-..... +..+++..+..+...+ +. ++..|..+....+.-+..+-.. .-..|.
T Consensus 163 ---~ylr~~ftls~~~ll~me~d~~dV~~ll~~~--~q------------i~~n~~sdk~~~E~LkvFyl~l--ql~yy~ 223 (629)
T KOG2300|consen 163 ---PYLRMLFTLSMLMLLIMERDDYDVEKLLQRC--GQ------------IWQNISSDKTQKEMLKVFYLVL--QLSYYL 223 (629)
T ss_pred ---HHHHHHHHHHHHHHHHhCccHHHHHHHHHHH--HH------------HHhccCCChHHHHHHHHHHHHH--HHHHHh
Confidence 111111000000 0000111111110000 00 0011111100000011111111 111111
Q ss_pred H---HHHHHHHHHHHHHHhc---cc-CcCC---CCCChhHHHHHHHH--HHHH------H---HhCCHHHHHHHHHHhhc
Q 001481 259 E---ASQLDEKINCFENLIR---RP-YFHV---KPLDDIQLKNWHDY--LSFA------E---KQGDFDWVVKLYERCLI 317 (1071)
Q Consensus 259 ~---a~~~~~~~~~fE~ai~---~~-~~~~---~~~~p~~~~~W~~y--~~~~------~---~~g~~~~a~~~yerAL~ 317 (1071)
. -+.+.-.++-....+. .. ..+. ...++-..-.|.-- +..+ . -.|=++++.+.-+++|.
T Consensus 224 ~~gq~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~ 303 (629)
T KOG2300|consen 224 LPGQVRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIK 303 (629)
T ss_pred cccchhhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHH
Confidence 1 1111112222222221 10 0111 11112222334322 1110 0 12335566666666663
Q ss_pred C------CCCCHHHHHH--------HHHHHHhhCCHHHHHHHHHHHHHHhhc---------cchHHHHHHHHHHHHhCCH
Q 001481 318 P------CADYPEFWMR--------YVDFMESKGGREIASYALDRATQIFLK---------RLPVIHLFNARYKEQIGDT 374 (1071)
Q Consensus 318 ~------~p~~~~lW~~--------ya~~l~~~g~~e~A~~il~rAl~~~~~---------~~p~i~~~~a~~e~~~g~~ 374 (1071)
. .+....+... .+.+-.-.|++.+|+.-+..+.+.+.+ ..+.+++..+.+....+-+
T Consensus 304 q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~ 383 (629)
T KOG2300|consen 304 QTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCY 383 (629)
T ss_pred HHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchH
Confidence 2 1112222222 222333457887777766666554321 2245777777777788899
Q ss_pred HHHHHHHHHHhhccChhhHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCC-----cHHHHHHHHHHHHhhc
Q 001481 375 SAARAAFPESYIDSDSRFIEKVT--FKANMERRLGNFVAACDTYKEALETAAEQRKFHT-----LPLLYVQFSRLTYTTT 447 (1071)
Q Consensus 375 ~~A~~~~~~al~~~~p~~~~~w~--~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~-----~~~l~~~~A~~~~~~~ 447 (1071)
+.|..-|..|++........+++ +++..+.+.|+.+ .|.++++.+.+....+. ...+++.+|.+.+ ..
T Consensus 384 enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~e----d~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf-~q 458 (629)
T KOG2300|consen 384 ENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAE----DLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAF-KQ 458 (629)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHH----HHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHH-Hh
Confidence 99999999998654443333322 3444555655533 34455666544422222 2346777788877 99
Q ss_pred CCHHHHHHHHHHHHhhCCChHH---H----HHHHHHHHHHcCCCCchhhHHHHHHHhhccCCcccccCChhhHHHHHHHH
Q 001481 448 GSADNARDILIDGIKHVPNCKL---L----LEELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLY 520 (1071)
Q Consensus 448 g~~e~Ar~i~e~al~~~P~~~~---l----w~~~~~~e~~~g~~~~a~~~r~l~e~Al~~~~d~~~~l~~~~~~~lw~~~ 520 (1071)
+++.+|+..+.++|+.. +..+ + ...+..+....|+..+++ ..+.-++... +-.++.+..||-.-
T Consensus 459 n~lnEaK~~l~e~Lkma-naed~~rL~a~~LvLLs~v~lslgn~~es~---nmvrpamqlA-----kKi~Di~vqLws~s 529 (629)
T KOG2300|consen 459 NDLNEAKRFLRETLKMA-NAEDLNRLTACSLVLLSHVFLSLGNTVESR---NMVRPAMQLA-----KKIPDIPVQLWSSS 529 (629)
T ss_pred ccHHHHHHHHHHHHhhc-chhhHHHHHHHHHHHHHHHHHHhcchHHHH---hccchHHHHH-----hcCCCchHHHHHHH
Confidence 99999999999999875 2221 1 223334444567665553 4444444321 12235667788665
Q ss_pred H-HHHHHhcCC--HHHHHHHHHH
Q 001481 521 L-QQFLDLCGT--IHDIRNAWNQ 540 (1071)
Q Consensus 521 l-~~~e~~~G~--~e~a~~~~~r 540 (1071)
+ +++...+|+ .+...+++..
T Consensus 530 i~~~L~~a~g~~~~~~e~e~~~~ 552 (629)
T KOG2300|consen 530 ILTDLYQALGEKGNEMENEAFRK 552 (629)
T ss_pred HHHHHHHHhCcchhhHHHHHHHH
Confidence 5 133355676 5555555544
No 366
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.42 E-value=2e+02 Score=33.52 Aligned_cols=142 Identities=8% Similarity=0.003 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHh---------h
Q 001481 393 IEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIK---------H 463 (1071)
Q Consensus 393 ~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~---------~ 463 (1071)
.-.+.....+..+.|+++.|++.+-.++-..+.--..|....+++-+ ..+.+..|-.+.|..+....+. .
T Consensus 273 l~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~ii-k~f~re~dp~k~as~~i~dI~N~ltGK~fkp~ 351 (625)
T KOG4422|consen 273 LFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLII-KNFKRESDPQKVASSWINDIQNSLTGKTFKPI 351 (625)
T ss_pred hHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHH-HHhcccCCchhhhHHHHHHHHHhhccCcccCC
Confidence 44566666666777888888888877777665544455544444333 2333233334445555554443 2
Q ss_pred CCChHHHHHHHHHHHHHcCCCCchhhHHHHHHHhhccCCcccccCChhhHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 001481 464 VPNCKLLLEELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQQFLDLCGTIHDIRNAWNQ 540 (1071)
Q Consensus 464 ~P~~~~lw~~~~~~e~~~g~~~~a~~~r~l~e~Al~~~~d~~~~l~~~~~~~lw~~~l~~~e~~~G~~e~a~~~~~r 540 (1071)
.|++..++.....+-....|.+-+..+..+++..-.. ..+++.....++.+-+..+......++...+.|+-
T Consensus 352 ~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~-----~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~ 423 (625)
T KOG4422|consen 352 TPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNW-----KFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYED 423 (625)
T ss_pred CCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCch-----hhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666656655555555555555666553221 23444444444433321233333445555555543
No 367
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=71.79 E-value=48 Score=31.11 Aligned_cols=44 Identities=9% Similarity=0.046 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Q 001481 412 ACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIK 462 (1071)
Q Consensus 412 A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~ 462 (1071)
+..+|.++..+ .|..+...+.+|.-+. ....|+++...-++||.
T Consensus 63 sve~~s~a~~L------sp~~A~~L~~la~~l~-s~~~Ykk~v~kak~~Ls 106 (111)
T PF04781_consen 63 SVECFSRAVEL------SPDSAHSLFELASQLG-SVKYYKKAVKKAKRGLS 106 (111)
T ss_pred hHHHHHHHhcc------ChhHHHHHHHHHHHhh-hHHHHHHHHHHHHHHhc
Confidence 44555555555 4444555555555443 44445555555555554
No 368
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=71.54 E-value=1.6e+02 Score=32.26 Aligned_cols=160 Identities=11% Similarity=0.084 Sum_probs=91.4
Q ss_pred HhCCHHHHHHHHHHhhcCC--------CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH---hh-ccchH-HHHHHHHH
Q 001481 301 KQGDFDWVVKLYERCLIPC--------ADYPEFWMRYVDFMESKGGREIASYALDRATQI---FL-KRLPV-IHLFNARY 367 (1071)
Q Consensus 301 ~~g~~~~a~~~yerAL~~~--------p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~---~~-~~~p~-i~~~~a~~ 367 (1071)
+.+++++++..|.+.|... -..+...+.+.++|...|++....+......+. |. ++... +.-..-.|
T Consensus 15 ~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~KiirtLiekf 94 (421)
T COG5159 15 KSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRTLIEKF 94 (421)
T ss_pred hhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHHHHHhc
Confidence 4456777777777777531 122455667777777777765444433222221 11 01111 11111122
Q ss_pred HHHhCCHHHHHHHHHHHhhcc---ChhhH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHH
Q 001481 368 KEQIGDTSAARAAFPESYIDS---DSRFI--EKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRL 442 (1071)
Q Consensus 368 e~~~g~~~~A~~~~~~al~~~---~p~~~--~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~ 442 (1071)
......++.-..+....++-. ...+. .+-++++.++...|.+.+|..+..-.+..++.-++.+....+++.=..+
T Consensus 95 ~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKv 174 (421)
T COG5159 95 PYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKV 174 (421)
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHH
Confidence 223444555555555544210 11111 2244666777888999999998888877777666677777777777777
Q ss_pred HHhhcCCHHHHHHHHHHHH
Q 001481 443 TYTTTGSADNARDILIDGI 461 (1071)
Q Consensus 443 ~~~~~g~~e~Ar~i~e~al 461 (1071)
++ ..+++.+++.-+..|-
T Consensus 175 yh-~irnv~KskaSLTaAr 192 (421)
T COG5159 175 YH-EIRNVSKSKASLTAAR 192 (421)
T ss_pred HH-HHHhhhhhhhHHHHHH
Confidence 76 7788888777766654
No 369
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=70.82 E-value=34 Score=33.89 Aligned_cols=49 Identities=18% Similarity=0.175 Sum_probs=40.1
Q ss_pred hCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhCCHHHHHHHHHHHh
Q 001481 336 KGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESY 385 (1071)
Q Consensus 336 ~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~~A~~~~~~al 385 (1071)
.++++++..+++ |+.++.|+.+.+.++-+.+....|++++|..+|....
T Consensus 23 ~~d~~D~e~lLd-ALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~ 71 (153)
T TIGR02561 23 SADPYDAQAMLD-ALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELL 71 (153)
T ss_pred cCCHHHHHHHHH-HHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhh
Confidence 677788877774 4555578888888888899999999999999998876
No 370
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.69 E-value=90 Score=39.36 Aligned_cols=86 Identities=17% Similarity=0.151 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHH
Q 001481 323 PEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANM 402 (1071)
Q Consensus 323 ~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~~A~~~~~~al~~~~p~~~~~w~~~a~l 402 (1071)
.++|.-|. +.|+++.|..+.+..... ...+....|+|+...++|.+|-.+|....+ .+.++-+++..
T Consensus 362 R~vWk~yL----d~g~y~kAL~~ar~~p~~----le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~----~FEEVaLKFl~- 428 (911)
T KOG2034|consen 362 RDVWKTYL----DKGEFDKALEIARTRPDA----LETVLLKQADFLFQDKEYLRAAEIYAETLS----SFEEVALKFLE- 428 (911)
T ss_pred HHHHHHHH----hcchHHHHHHhccCCHHH----HHHHHHHHHHHHHhhhHHHHHHHHHHHhhh----hHHHHHHHHHh-
Confidence 46776554 466666666555433111 235778888998888899999998887752 34444444442
Q ss_pred HHHcCCHHHHHHHHHHHHHHHh
Q 001481 403 ERRLGNFVAACDTYKEALETAA 424 (1071)
Q Consensus 403 e~~~g~~~~A~~~y~~Al~~~~ 424 (1071)
..+.+.-+.++.+=++.++
T Consensus 429 ---~~~~~~L~~~L~KKL~~lt 447 (911)
T KOG2034|consen 429 ---INQERALRTFLDKKLDRLT 447 (911)
T ss_pred ---cCCHHHHHHHHHHHHhhCC
Confidence 2333344445555555543
No 371
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=69.18 E-value=9.5 Score=28.05 Aligned_cols=29 Identities=10% Similarity=0.164 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHhh
Q 001481 434 LLYVQFSRLTYTTTGSADNARDILIDGIKH 463 (1071)
Q Consensus 434 ~l~~~~A~~~~~~~g~~e~Ar~i~e~al~~ 463 (1071)
..+.++|.++. ..|++++|..++++++..
T Consensus 3 ~~~~~la~~~~-~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYR-AQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHH-HCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-hhhhcchhhHHHHHHHHH
Confidence 46778899988 899999999999999865
No 372
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=69.13 E-value=1.7e+02 Score=32.10 Aligned_cols=102 Identities=11% Similarity=-0.001 Sum_probs=62.1
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHhhcc-----ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHH--
Q 001481 362 LFNARYKEQIGDTSAARAAFPESYIDS-----DSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPL-- 434 (1071)
Q Consensus 362 ~~~a~~e~~~g~~~~A~~~~~~al~~~-----~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~-- 434 (1071)
+..+.++...|.+.+|+.+....+.++ .+....+++.-...+....++.+++.-+-.|..+.....+ |....
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YC-Ppqlqa~ 207 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYC-PPQLQAQ 207 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCC-CHHHHHH
Confidence 344556678899999998877665332 2344555665566666667777777777666655432222 21111
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHhhCC
Q 001481 435 LYVQFSRLTYTTTGSADNARDILIDGIKHVP 465 (1071)
Q Consensus 435 l~~~~A~~~~~~~g~~e~Ar~i~e~al~~~P 465 (1071)
+=+.-| ++.-.-.++..|..+|-.|++-+-
T Consensus 208 lDL~sG-Ilhcdd~dyktA~SYF~Ea~Egft 237 (421)
T COG5159 208 LDLLSG-ILHCDDRDYKTASSYFIEALEGFT 237 (421)
T ss_pred HHHhcc-ceeeccccchhHHHHHHHHHhccc
Confidence 112112 222256789999999999998765
No 373
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=68.39 E-value=2e+02 Score=32.10 Aligned_cols=46 Identities=15% Similarity=0.063 Sum_probs=28.6
Q ss_pred CHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Q 001481 338 GREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYI 386 (1071)
Q Consensus 338 ~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~~A~~~~~~al~ 386 (1071)
+...-+.....|+++ ++.|...+..+| +++...+.+|.++|++|++
T Consensus 199 np~~RI~~A~~ALeI-N~eCA~AyvLLA--EEEa~Ti~~AE~l~k~ALk 244 (556)
T KOG3807|consen 199 NPPARIKAAYQALEI-NNECATAYVLLA--EEEATTIVDAERLFKQALK 244 (556)
T ss_pred CcHHHHHHHHHHHhc-CchhhhHHHhhh--hhhhhhHHHHHHHHHHHHH
Confidence 344444555667776 555554454433 4445667888999998884
No 374
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=67.03 E-value=13 Score=27.28 Aligned_cols=30 Identities=30% Similarity=0.315 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 001481 394 EKVTFKANMERRLGNFVAACDTYKEALETA 423 (1071)
Q Consensus 394 ~~w~~~a~le~~~g~~~~A~~~y~~Al~~~ 423 (1071)
..+..++.++...|++++|+.+++++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 456778888888899999999999998873
No 375
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=66.96 E-value=54 Score=33.51 Aligned_cols=100 Identities=12% Similarity=0.081 Sum_probs=65.5
Q ss_pred chHHHHHHHHHHH-HhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHHHhhhccCC
Q 001481 357 LPVIHLFNARYKE-QIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERR-----LGNFVAACDTYKEALETAAEQRKFH 430 (1071)
Q Consensus 357 ~p~i~~~~a~~e~-~~g~~~~A~~~~~~al~~~~p~~~~~w~~~a~le~~-----~g~~~~A~~~y~~Al~~~~~~~~~p 430 (1071)
.|+.-..++++++ ...+|++|.++|+...++ -.+++..++|+..... .+++..|++.|+.|.+.
T Consensus 33 ~Pe~C~lLgdYlEgi~knF~~A~kv~K~nCde--n~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~-------- 102 (248)
T KOG4014|consen 33 RPESCQLLGDYLEGIQKNFQAAVKVFKKNCDE--NSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDA-------- 102 (248)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhcccc--cCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhcc--------
Confidence 4554445555544 466888888888877632 2456667777764432 35688899999988765
Q ss_pred CcHHHHHHHHHHHHh----hcCC--HHHHHHHHHHHHhhCCC
Q 001481 431 TLPLLYVQFSRLTYT----TTGS--ADNARDILIDGIKHVPN 466 (1071)
Q Consensus 431 ~~~~l~~~~A~~~~~----~~g~--~e~Ar~i~e~al~~~P~ 466 (1071)
..+......|.+.+. +.++ .++|+.++.++....-.
T Consensus 103 n~~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~~~ 144 (248)
T KOG4014|consen 103 NIPQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLEDG 144 (248)
T ss_pred CCHHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCCCc
Confidence 345666666766652 2223 78999999998765443
No 376
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=66.85 E-value=21 Score=46.07 Aligned_cols=115 Identities=18% Similarity=0.254 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHHh---CC--HHHHHHHHHHhhcCC------CCCH---HHHHHHHHHHHhhCCHHHHHHHHHHHHHHh
Q 001481 288 QLKNWHDYLSFAEKQ---GD--FDWVVKLYERCLIPC------ADYP---EFWMRYVDFMESKGGREIASYALDRATQIF 353 (1071)
Q Consensus 288 ~~~~W~~y~~~~~~~---g~--~~~a~~~yerAL~~~------p~~~---~lW~~ya~~l~~~g~~e~A~~il~rAl~~~ 353 (1071)
.+..|.+|+.|.... |+ ....+.+.++|+... ..+. .+|+- ++....+.+++.+|......-
T Consensus 33 Pl~~w~ryi~wv~~~~~~~~~~~~~l~~~lerc~~~~~~lk~Y~nD~Rfl~~~~~----~~~~e~~~d~~d~f~~m~~kg 108 (974)
T KOG1166|consen 33 PLDKWLRYIEWVLEVYPEGKENQSLLRNLLERCLEELEDLKRYRNDPRFLILWCS----LELREELQDAEDFFSYLENKG 108 (974)
T ss_pred chhhhHhHhhhhhhccccCCchhhhHHHHHHHHHHhccchhhccccHHHHHHHHh----HHHHHHHhhHHHHHHHHHhcc
Confidence 356899999998642 33 455677778777532 2222 23332 223334567777776665421
Q ss_pred h-ccchHHHHHHHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHc
Q 001481 354 L-KRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRL 406 (1071)
Q Consensus 354 ~-~~~p~i~~~~a~~e~~~g~~~~A~~~~~~al~~~~p~~~~~w~~~a~le~~~ 406 (1071)
. ......|..|+.++++.+.+.+|..+|..+++.......++-..+..|..+.
T Consensus 109 Ig~~lalfYe~~a~~lE~k~~~keA~~v~q~Giq~~aeP~~rL~~~~~~F~~r~ 162 (974)
T KOG1166|consen 109 IGTTLALFYEAYAKHLERKEYFKEAKEVFQLGIQNKAEPLERLLRQYSNFQQRL 162 (974)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Confidence 1 1223467778888888888999999999888543333334444444444444
No 377
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=66.44 E-value=1.1e+02 Score=35.24 Aligned_cols=62 Identities=18% Similarity=0.115 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCC---hHHHHHHHHHHHHHcCCCCchhhHHHHHHHhhc
Q 001481 434 LLYVQFSRLTYTTTGSADNARDILIDGIKHVPN---CKLLLEELIKFTMVHGGRSHISIVDAVISNALY 499 (1071)
Q Consensus 434 ~l~~~~A~~~~~~~g~~e~Ar~i~e~al~~~P~---~~~lw~~~~~~e~~~g~~~~a~~~r~l~e~Al~ 499 (1071)
.++..+|.++. .+|+++.|.+.|-++-..|-. ...+|.+++..-+..|++.++. ....+|.+
T Consensus 151 ra~~Dl~dhy~-~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~---sy~~~A~s 215 (466)
T KOG0686|consen 151 RALEDLGDHYL-DCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVL---SYISKAES 215 (466)
T ss_pred HHHHHHHHHHH-HhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhh---hHHHHHHh
Confidence 45566777777 899999999999997666654 3468899999988999998763 77777765
No 378
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=65.14 E-value=1.5e+02 Score=33.26 Aligned_cols=100 Identities=19% Similarity=0.194 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHhhccC--hhhHHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHHHhhhccC
Q 001481 359 VIHLFNARYKEQIGDTSAARAAFPESYIDSD--SRFIEKVTFKANMERR-------LGNFVAACDTYKEALETAAEQRKF 429 (1071)
Q Consensus 359 ~i~~~~a~~e~~~g~~~~A~~~~~~al~~~~--p~~~~~w~~~a~le~~-------~g~~~~A~~~y~~Al~~~~~~~~~ 429 (1071)
.+|+..++++.+.|+.+.|.+.|.+..+..- ..-.++.+..+.+-.- ...+++|..+++++-+. ..
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDW-----eR 179 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDW-----ER 179 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCh-----hh
Confidence 4566666777777777776666655542110 0112222222222121 23445555555554322 01
Q ss_pred CCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCC
Q 001481 430 HTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPN 466 (1071)
Q Consensus 430 p~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~~~P~ 466 (1071)
.+-.++|. |.+.. ...++++|-..|-..+..+..
T Consensus 180 rNRlKvY~--Gly~m-svR~Fk~Aa~Lfld~vsTFtS 213 (393)
T KOG0687|consen 180 RNRLKVYQ--GLYCM-SVRNFKEAADLFLDSVSTFTS 213 (393)
T ss_pred hhhHHHHH--HHHHH-HHHhHHHHHHHHHHHcccccc
Confidence 12223333 33333 678899999999988877664
No 379
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=63.69 E-value=90 Score=41.10 Aligned_cols=127 Identities=17% Similarity=0.116 Sum_probs=92.9
Q ss_pred hhCCHHHHHHHHHHHHHH-------hhccchHHHHHHHHHHHHhCCHHHHHHHHHHHhh-------ccChhhHHHHHHHH
Q 001481 335 SKGGREIASYALDRATQI-------FLKRLPVIHLFNARYKEQIGDTSAARAAFPESYI-------DSDSRFIEKVTFKA 400 (1071)
Q Consensus 335 ~~g~~e~A~~il~rAl~~-------~~~~~p~i~~~~a~~e~~~g~~~~A~~~~~~al~-------~~~p~~~~~w~~~a 400 (1071)
..|.+.+|.+ +.+++.. ..+..+..+..+++++.+.++.++|...-.++.- .-.|+....+...+
T Consensus 944 ~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nla 1022 (1236)
T KOG1839|consen 944 LEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLA 1022 (1236)
T ss_pred cccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHH
Confidence 3455666666 4444443 3345557788889999999999999887777641 11346667788888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHh--hhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhh
Q 001481 401 NMERRLGNFVAACDTYKEALETAA--EQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKH 463 (1071)
Q Consensus 401 ~le~~~g~~~~A~~~y~~Al~~~~--~~~~~p~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~~ 463 (1071)
.++...++...|...+.+++++.. .....|....+..+++.++. ..++++.|..+.+.|++.
T Consensus 1023 l~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~-~v~e~d~al~~le~A~a~ 1086 (1236)
T KOG1839|consen 1023 LYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLL-GVEEADTALRYLESALAK 1086 (1236)
T ss_pred HHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHh-hHHHHHHHHHHHHHHHHH
Confidence 888888899999999999888752 12245667777888888876 789999999999999973
No 380
>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996. This model describes an abundant paralogous domain of Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. The domain also occurs, although rarely, in Myxococcus xanthus DK 1622 and related species. Most member proteins have extensive repeats similar to the leucine-rich repeat, or another repeat class or region of low-complexity sequence. This domain is not repeated, and in Gemmata is usually found at the protein N-terminus.
Probab=63.65 E-value=12 Score=28.38 Aligned_cols=33 Identities=18% Similarity=0.326 Sum_probs=26.2
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHHHHhhCCHHHH
Q 001481 310 KLYERCLIPCADYPEFWMRYVDFMESKGGREIA 342 (1071)
Q Consensus 310 ~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A 342 (1071)
..|.+||...|.+...|+.||.|+...|+.+.|
T Consensus 3 ~all~AI~~~P~ddt~RLvYADWL~e~gdp~ra 35 (42)
T TIGR02996 3 EALLRAILAHPDDDTPRLVYADWLDEHGDPARA 35 (42)
T ss_pred HHHHHHHHhCCCCcchHHHHHHHHHHcCCHHHH
Confidence 356778888888888999999998888876443
No 381
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=63.56 E-value=97 Score=29.10 Aligned_cols=98 Identities=11% Similarity=0.140 Sum_probs=53.6
Q ss_pred HhCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCHHHHHHHH-HHHHHHhhccchHHHHHHHHHHHHhCCHHHHHH
Q 001481 301 KQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYAL-DRATQIFLKRLPVIHLFNARYKEQIGDTSAARA 379 (1071)
Q Consensus 301 ~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il-~rAl~~~~~~~p~i~~~~a~~e~~~g~~~~A~~ 379 (1071)
..|+.-+|.++.+..+...+++...|+ +....|. +| +-|..+ .+|++-+.| +-.+.+
T Consensus 8 ~rGnhiKAL~iied~i~~h~~~~~~~~----lh~~QG~------if~~lA~~t---en~d~k~~y---------Ll~sve 65 (111)
T PF04781_consen 8 ARGNHIKALEIIEDLISRHGEDESSWL----LHRLQGT------IFYKLAKKT---ENPDVKFRY---------LLGSVE 65 (111)
T ss_pred HccCHHHHHHHHHHHHHHccCCCchHH----HHHHHhH------HHHHHHHhc---cCchHHHHH---------HHHhHH
Confidence 467777777777777777777776662 2222331 22 222222 234332221 123667
Q ss_pred HHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001481 380 AFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALE 421 (1071)
Q Consensus 380 ~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~ 421 (1071)
.|.++. .+.|..+...+.+++-......++++..-.++++.
T Consensus 66 ~~s~a~-~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Ls 106 (111)
T PF04781_consen 66 CFSRAV-ELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLS 106 (111)
T ss_pred HHHHHh-ccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 777887 67787776666666544433445555555555554
No 382
>PF14929 TAF1_subA: TAF RNA Polymerase I subunit A
Probab=63.05 E-value=67 Score=39.04 Aligned_cols=82 Identities=12% Similarity=0.124 Sum_probs=57.3
Q ss_pred CcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHHHHHH---HHHHhcCCCHHHHHHHHHHHHhhCCChhHHHH
Q 001481 53 DDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFE---RAVQSATYSVDVWFHYCSLSMSTFEDPNDVRR 129 (1071)
Q Consensus 53 ~~~~~a~~vyeraL~~~P~s~~lW~~~a~~e~~~~~~e~A~~lfe---rAL~~~P~s~~lW~~y~~~~~~~~~~~e~ar~ 129 (1071)
+....+..+|+++++..|.+.-.--.++.+..+ ...+..+++ --+... .+.++|+.|+...+.+.++++..++
T Consensus 358 ~~~~~l~~~~e~~~~~~P~~~~~le~l~~~~~~---~~~~~~Lle~i~~~l~~~-~s~~iwle~~~~~l~~~~~~~~~~e 433 (547)
T PF14929_consen 358 NNSSVLSSCLEDCLKKDPTMSYSLERLILLHQK---DYSAEQLLEMIALHLDLV-PSHPIWLEFVSCFLKNPSRFEDKEE 433 (547)
T ss_pred ccHHHHHHHHHHHhcCCCcHHHHHHHHHhhhhh---HHHHHHHHHHHHHHhhcC-CCchHHHHHHHHHHhccccccccHH
Confidence 467778899999999999988777776666544 344555555 223344 4788999999998886677765666
Q ss_pred HHHHHHHhc
Q 001481 130 LFKRALSFV 138 (1071)
Q Consensus 130 l~erAL~~~ 138 (1071)
-...|++.+
T Consensus 434 ~~~~~l~vl 442 (547)
T PF14929_consen 434 DHKSALKVL 442 (547)
T ss_pred HHHHHHhcc
Confidence 666666443
No 383
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.88 E-value=1.4e+02 Score=37.66 Aligned_cols=33 Identities=21% Similarity=0.116 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHhhccChh
Q 001481 359 VIHLFNARYKEQIGDTSAARAAFPESYIDSDSR 391 (1071)
Q Consensus 359 ~i~~~~a~~e~~~g~~~~A~~~~~~al~~~~p~ 391 (1071)
.++..||.++...|++++|..-|.++|..++|.
T Consensus 369 ~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s 401 (933)
T KOG2114|consen 369 EIHRKYGDYLYGKGDFDEATDQYIETIGFLEPS 401 (933)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHcccCChH
Confidence 577788888888888888888888888655553
No 384
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=61.67 E-value=2.4e+02 Score=30.60 Aligned_cols=55 Identities=20% Similarity=0.169 Sum_probs=40.1
Q ss_pred CHHHHHHHHHHHHHHHhhh--ccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Q 001481 408 NFVAACDTYKEALETAAEQ--RKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIK 462 (1071)
Q Consensus 408 ~~~~A~~~y~~Al~~~~~~--~~~p~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~ 462 (1071)
-.+.|...|+.|++..... ..+|..-.+.++++-|++...++.++|.++-..|+.
T Consensus 143 ~~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd 199 (244)
T smart00101 143 AAENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD 199 (244)
T ss_pred HHHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3678999999999985431 123333457888999988788999998877666654
No 385
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=58.88 E-value=1e+02 Score=40.65 Aligned_cols=153 Identities=12% Similarity=0.002 Sum_probs=96.6
Q ss_pred HHHHHHHHhh-cCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhc----cchHH---HHHHHHHHHHhCCHHHHH
Q 001481 307 WVVKLYERCL-IPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLK----RLPVI---HLFNARYKEQIGDTSAAR 378 (1071)
Q Consensus 307 ~a~~~yerAL-~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~----~~p~i---~~~~a~~e~~~g~~~~A~ 378 (1071)
++..++.+.. ...|.....+..+++.+...|+.++|...-.+|+-+..+ +.|+- +...+.++...+....|.
T Consensus 956 ~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al 1035 (1236)
T KOG1839|consen 956 ESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGAL 1035 (1236)
T ss_pred hhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchh
Confidence 3344666333 456888899999999999999999999998888764222 22333 333445566677777788
Q ss_pred HHHHHHhh-------ccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccC--CCcHHHHHHHHHHHHhhcCC
Q 001481 379 AAFPESYI-------DSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKF--HTLPLLYVQFSRLTYTTTGS 449 (1071)
Q Consensus 379 ~~~~~al~-------~~~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~--p~~~~l~~~~A~~~~~~~g~ 449 (1071)
..+.++++ +..|..+.+......++...+.++.|.++.+.|++..+.-... -.....+..+|++.. ..++
T Consensus 1036 ~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~-s~~d 1114 (1236)
T KOG1839|consen 1036 KSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFE-SMKD 1114 (1236)
T ss_pred hhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHh-hhHH
Confidence 88777753 2235555556666666667788999999999999864322211 123344555555544 4455
Q ss_pred HHHHHHHHHHH
Q 001481 450 ADNARDILIDG 460 (1071)
Q Consensus 450 ~e~Ar~i~e~a 460 (1071)
+..|....+.+
T Consensus 1115 fr~al~~ek~t 1125 (1236)
T KOG1839|consen 1115 FRNALEHEKVT 1125 (1236)
T ss_pred HHHHHHHHhhH
Confidence 54444444433
No 386
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.17 E-value=4e+02 Score=32.05 Aligned_cols=131 Identities=16% Similarity=0.049 Sum_probs=75.0
Q ss_pred HHHHHHHHHHhCCH--HHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhccch-HHHHHHHHHH
Q 001481 292 WHDYLSFAEKQGDF--DWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLP-VIHLFNARYK 368 (1071)
Q Consensus 292 W~~y~~~~~~~g~~--~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p-~i~~~~a~~e 368 (1071)
|...+.++...+.. +...+.........|..+-..+.+++.+...|+.+.|...++.+++.-.+..- ...+..+...
T Consensus 234 y~~~~~~~~~~p~~d~~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~ 313 (546)
T KOG3783|consen 234 YYQFISFVLGTPNPDGEECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLS 313 (546)
T ss_pred HHHHHHHHcCCCCccHHHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 44445555444433 33344444444567888888888899999999988888888888763111111 1222334444
Q ss_pred HHhCCHHHHHHHHHHHhhccChhhHHHHHHHHH----------HHHHcCCHHHHHHHHHHHHHHHh
Q 001481 369 EQIGDTSAARAAFPESYIDSDSRFIEKVTFKAN----------MERRLGNFVAACDTYKEALETAA 424 (1071)
Q Consensus 369 ~~~g~~~~A~~~~~~al~~~~p~~~~~w~~~a~----------le~~~g~~~~A~~~y~~Al~~~~ 424 (1071)
.-..++..|-..+....++.+ -.++++.|.. .....|+.+.|-.+++.+.+++.
T Consensus 314 v~~~~~~~aad~~~~L~desd--WS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~ 377 (546)
T KOG3783|consen 314 VGQHQYSRAADSFDLLRDESD--WSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLA 377 (546)
T ss_pred HHHHHHHHHhhHHHHHHhhhh--hhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHH
Confidence 445567777777776653221 1222222222 33334677777777777777653
No 387
>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996. This model describes an abundant paralogous domain of Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. The domain also occurs, although rarely, in Myxococcus xanthus DK 1622 and related species. Most member proteins have extensive repeats similar to the leucine-rich repeat, or another repeat class or region of low-complexity sequence. This domain is not repeated, and in Gemmata is usually found at the protein N-terminus.
Probab=58.13 E-value=23 Score=26.91 Aligned_cols=25 Identities=16% Similarity=-0.056 Sum_probs=9.8
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHhCC
Q 001481 64 SFLAEFPLCYGYWRKYADHKARLCS 88 (1071)
Q Consensus 64 raL~~~P~s~~lW~~~a~~e~~~~~ 88 (1071)
+++...|.+-..|+.|+.|....|+
T Consensus 7 ~AI~~~P~ddt~RLvYADWL~e~gd 31 (42)
T TIGR02996 7 RAILAHPDDDTPRLVYADWLDEHGD 31 (42)
T ss_pred HHHHhCCCCcchHHHHHHHHHHcCC
Confidence 3333344443444444444333333
No 388
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=58.11 E-value=47 Score=36.10 Aligned_cols=59 Identities=12% Similarity=0.106 Sum_probs=40.4
Q ss_pred cCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCC
Q 001481 406 LGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVP 465 (1071)
Q Consensus 406 ~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~~~P 465 (1071)
.......++++++|++.++..........+...+|..+. ..|++++|.++|+.++..+.
T Consensus 151 ~~hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~-~~g~~~~A~~~l~~~~~~yr 209 (247)
T PF11817_consen 151 VDHSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYF-RLGDYDKALKLLEPAASSYR 209 (247)
T ss_pred cchHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHH
Confidence 334455667777777765443333334456677888877 89999999999999976654
No 389
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=57.97 E-value=3.6e+02 Score=31.36 Aligned_cols=100 Identities=9% Similarity=-0.063 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhhccC--hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh----hccCCCcH
Q 001481 360 IHLFNARYKEQIGDTSAARAAFPESYIDSD--SRFIEKVTFKANMERRLGNFVAACDTYKEALETAAE----QRKFHTLP 433 (1071)
Q Consensus 360 i~~~~a~~e~~~g~~~~A~~~~~~al~~~~--p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~----~~~~p~~~ 433 (1071)
.+..++.++...|+++.|.+.|.|+.+.+- ...+..|+.++.+-...|++......-.+|...... ....+...
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl 231 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKL 231 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcch
Confidence 455567788899999999999999874332 356788999998888888888777777776654200 00122233
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Q 001481 434 LLYVQFSRLTYTTTGSADNARDILIDGIK 462 (1071)
Q Consensus 434 ~l~~~~A~~~~~~~g~~e~Ar~i~e~al~ 462 (1071)
+++..+|.+ ..++++.|.+.|-.+..
T Consensus 232 ~C~agLa~L---~lkkyk~aa~~fL~~~~ 257 (466)
T KOG0686|consen 232 KCAAGLANL---LLKKYKSAAKYFLLAEF 257 (466)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHhCCC
Confidence 344444444 55688888887766643
No 390
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=57.90 E-value=12 Score=25.05 Aligned_cols=25 Identities=20% Similarity=0.293 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHH
Q 001481 434 LLYVQFSRLTYTTTGSADNARDILID 459 (1071)
Q Consensus 434 ~l~~~~A~~~~~~~g~~e~Ar~i~e~ 459 (1071)
.+.+.+|.++. ..|++++|+.++++
T Consensus 2 ~a~~~la~~~~-~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 2 RARLALARALL-AQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHH-HcCCHHHHHHHHhC
Confidence 35677888888 99999999998863
No 391
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=57.43 E-value=3e+02 Score=30.34 Aligned_cols=144 Identities=13% Similarity=-0.016 Sum_probs=88.9
Q ss_pred CCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhh----CCHHHHHHHHHHHHHHhhccchHH---HHHHHHHHHHh----
Q 001481 303 GDFDWVVKLYERCLIPCADYPEFWMRYVDFMESK----GGREIASYALDRATQIFLKRLPVI---HLFNARYKEQI---- 371 (1071)
Q Consensus 303 g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~----g~~e~A~~il~rAl~~~~~~~p~i---~~~~a~~e~~~---- 371 (1071)
.+...+...|+.+.. ......-+.++.++..- .+..+|...|++|... .++.. -+.++.++..-
T Consensus 91 ~~~~~A~~~~~~~a~--~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~---g~~~a~~~~~~l~~~~~~g~~~~ 165 (292)
T COG0790 91 RDKTKAADWYRCAAA--DGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKL---GNVEAALAMYRLGLAYLSGLQAL 165 (292)
T ss_pred ccHHHHHHHHHHHhh--cccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHc---CChhHHHHHHHHHHHHHcChhhh
Confidence 357788888886554 34556667788777652 2678999999999975 23322 33333333221
Q ss_pred -C--CHHHHHHHHHHHhhccChhhHHHHHHHHHHHHH-c---CCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHH
Q 001481 372 -G--DTSAARAAFPESYIDSDSRFIEKVTFKANMERR-L---GNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTY 444 (1071)
Q Consensus 372 -g--~~~~A~~~~~~al~~~~p~~~~~w~~~a~le~~-~---g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~ 444 (1071)
- +...|+..|.++-... +....+.++.++.. . .++.+|...|.+|.+. .. ......++ +++
T Consensus 166 ~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~------g~--~~a~~~~~-~~~ 233 (292)
T COG0790 166 AVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQ------GD--GAACYNLG-LMY 233 (292)
T ss_pred cccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC------CC--HHHHHHHH-HHH
Confidence 1 2337888999887432 45556666655543 2 3889999999999887 32 55566666 433
Q ss_pred hhcC---------------CHHHHHHHHHHHHhhC
Q 001481 445 TTTG---------------SADNARDILIDGIKHV 464 (1071)
Q Consensus 445 ~~~g---------------~~e~Ar~i~e~al~~~ 464 (1071)
..| +...|...|.++...-
T Consensus 234 -~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 267 (292)
T COG0790 234 -LNGEGVKKAAFLTAAKEEDKKQALEWLQKACELG 267 (292)
T ss_pred -hcCCCchhhhhcccccCCCHHHHHHHHHHHHHcC
Confidence 344 5555555555555443
No 392
>KOG4592 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.98 E-value=50 Score=39.55 Aligned_cols=18 Identities=28% Similarity=0.213 Sum_probs=8.0
Q ss_pred CCCCCCCCCCCCCCCCCC
Q 001481 783 SSMGTQASSSAPIQTRTV 800 (1071)
Q Consensus 783 ~s~~~~~~~~~~~~~~~~ 800 (1071)
+.+.++||++-+++.+..
T Consensus 55 ~np~ssass~~~~~~N~~ 72 (728)
T KOG4592|consen 55 ANPLSSASSSSPAPLNAP 72 (728)
T ss_pred CCccccCccCCCCCcCcc
Confidence 334444444445544433
No 393
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=56.77 E-value=2.8e+02 Score=32.73 Aligned_cols=161 Identities=13% Similarity=0.067 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhC--------------CHHHHHHHHHHHHHHhhc
Q 001481 290 KNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKG--------------GREIASYALDRATQIFLK 355 (1071)
Q Consensus 290 ~~W~~y~~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g--------------~~e~A~~il~rAl~~~~~ 355 (1071)
.....++++..-.+|++.|..+|+-+...+ .....|..||-..+-.+ ..++....++.|+..|.+
T Consensus 209 ~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df-~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~ 287 (414)
T PF12739_consen 209 AQMRRLADLAFMLRDYELAYSTYRLLKKDF-KNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLK 287 (414)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHHH-hhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHh
Confidence 346677888888999999999999888643 34577777766554332 113455566666655544
Q ss_pred ----cch------HHHHHHHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--
Q 001481 356 ----RLP------VIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETA-- 423 (1071)
Q Consensus 356 ----~~p------~i~~~~a~~e~~~g~~~~A~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~-- 423 (1071)
.+. ..-+..++++...+.+.+|-..+-++..++. +...+.+. +.-+++++--..
T Consensus 288 ~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l-------------~~~l~~~~-~alllE~~a~~~~~ 353 (414)
T PF12739_consen 288 SALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEIL-------------ESDLRPFG-SALLLEQAAYCYAS 353 (414)
T ss_pred hhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH-------------hhhhhhHh-hHHHHHHHHHhhcc
Confidence 111 1233334444455555555554444432210 00111011 111122221111
Q ss_pred hhhccC-C-----CcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCC
Q 001481 424 AEQRKF-H-----TLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVP 465 (1071)
Q Consensus 424 ~~~~~~-p-----~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~~~P 465 (1071)
...... + ...-+|+-+|.-.+...|....|..+|.+|+..+.
T Consensus 354 ~~~~~~~~~~~r~RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~ 401 (414)
T PF12739_consen 354 LRSNRPSPGLTRFRKYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYE 401 (414)
T ss_pred cccCCCCccchhhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhC
Confidence 000000 1 12345666666666688888888888888887654
No 394
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=56.60 E-value=1.3e+02 Score=36.22 Aligned_cols=84 Identities=15% Similarity=0.141 Sum_probs=38.7
Q ss_pred cchHHHHHHHHHHHH--hCCHHHHHHHHHHHhhc----cChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccC
Q 001481 356 RLPVIHLFNARYKEQ--IGDTSAARAAFPESYID----SDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKF 429 (1071)
Q Consensus 356 ~~p~i~~~~a~~e~~--~g~~~~A~~~~~~al~~----~~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~ 429 (1071)
..|.....+|++++. ...-..+..+|.+||.. ..-.++--|.-.+.++.|++++.+|...+-+|.+.+......
T Consensus 275 ~YPmALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~yR~~~~~eA~~~Wa~aa~Vi~~YnY~ 354 (618)
T PF05053_consen 275 RYPMALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYNNHHVYPYTYLGGYYYRHKRYREALRSWAEAADVIRKYNYS 354 (618)
T ss_dssp T-HHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTTSB--
T ss_pred hCchhhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhcCCccccceehhhHHHHHHHHHHHHHHHHHHHHHHHHcccC
Confidence 345555555555543 12223456666666521 011122225555556666677777777666666555433333
Q ss_pred CCcHHHHHHH
Q 001481 430 HTLPLLYVQF 439 (1071)
Q Consensus 430 p~~~~l~~~~ 439 (1071)
..+.++|-.+
T Consensus 355 reDeEiYKEf 364 (618)
T PF05053_consen 355 REDEEIYKEF 364 (618)
T ss_dssp GGGHHHHHHH
T ss_pred ccHHHHHHHH
Confidence 4455555444
No 395
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=56.27 E-value=2e+02 Score=34.81 Aligned_cols=116 Identities=12% Similarity=-0.008 Sum_probs=57.8
Q ss_pred CChhHHHHHHHH--HHHHHHhCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCHHHHHH-HHHHHHHHhhccchHH
Q 001481 284 LDDIQLKNWHDY--LSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASY-ALDRATQIFLKRLPVI 360 (1071)
Q Consensus 284 ~~p~~~~~W~~y--~~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~-il~rAl~~~~~~~p~i 360 (1071)
.++.+.++...+ .-.+...++...+.-..+.++..+|........++..++..|....+.. +.+.|... .+.+..+
T Consensus 60 ~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~-~~~~~~~ 138 (620)
T COG3914 60 INDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWL-SPDNAEF 138 (620)
T ss_pred cCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CcchHHH
Confidence 344444443333 2222334455556666666666666666666666666666555433333 33334433 3333222
Q ss_pred HHH------HHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHH
Q 001481 361 HLF------NARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKAN 401 (1071)
Q Consensus 361 ~~~------~a~~e~~~g~~~~A~~~~~~al~~~~p~~~~~w~~~a~ 401 (1071)
... .+++....|+..++.....++. ++.|.+.++...++.
T Consensus 139 ~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~-d~~p~~~~~~~~~~~ 184 (620)
T COG3914 139 LGHLIRFYQLGRYLKLLGRTAEAELALERAV-DLLPKYPRVLGALMT 184 (620)
T ss_pred HhhHHHHHHHHHHHHHhccHHHHHHHHHHHH-HhhhhhhhhHhHHHH
Confidence 211 2444455555666666666665 556666555444443
No 396
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.88 E-value=2.6e+02 Score=33.93 Aligned_cols=82 Identities=18% Similarity=0.131 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHH
Q 001481 323 PEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANM 402 (1071)
Q Consensus 323 ~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~~A~~~~~~al~~~~p~~~~~w~~~a~l 402 (1071)
.+.....+.|+++.|..+.|+++. .+|+-.+ ++....|+++.|..+..++ +...-|..++++
T Consensus 614 k~~rt~va~Fle~~g~~e~AL~~s---------~D~d~rF---elal~lgrl~iA~~la~e~------~s~~Kw~~Lg~~ 675 (794)
T KOG0276|consen 614 KEIRTKVAHFLESQGMKEQALELS---------TDPDQRF---ELALKLGRLDIAFDLAVEA------NSEVKWRQLGDA 675 (794)
T ss_pred hhhhhhHHhHhhhccchHhhhhcC---------CChhhhh---hhhhhcCcHHHHHHHHHhh------cchHHHHHHHHH
Confidence 456778899999988666555433 1232222 2345689999998886554 334559999999
Q ss_pred HHHcCCHHHHHHHHHHHHHH
Q 001481 403 ERRLGNFVAACDTYKEALET 422 (1071)
Q Consensus 403 e~~~g~~~~A~~~y~~Al~~ 422 (1071)
....|++..|.++|.+|.+.
T Consensus 676 al~~~~l~lA~EC~~~a~d~ 695 (794)
T KOG0276|consen 676 ALSAGELPLASECFLRARDL 695 (794)
T ss_pred HhhcccchhHHHHHHhhcch
Confidence 99999999999999999776
No 397
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=55.81 E-value=35 Score=37.37 Aligned_cols=60 Identities=17% Similarity=0.049 Sum_probs=49.4
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 001481 363 FNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETA 423 (1071)
Q Consensus 363 ~~a~~e~~~g~~~~A~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~ 423 (1071)
..++.+.+.|.+.+|..+.++++ .++|=....|..+...+...|+--.|.+-|++..+.+
T Consensus 284 kva~~yle~g~~neAi~l~qr~l-tldpL~e~~nk~lm~~la~~gD~is~~khyerya~vl 343 (361)
T COG3947 284 KVARAYLEAGKPNEAIQLHQRAL-TLDPLSEQDNKGLMASLATLGDEISAIKHYERYAEVL 343 (361)
T ss_pred HHHHHHHHcCChHHHHHHHHHHh-hcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHH
Confidence 34566778999999999999998 7788777888888998999999888888888776654
No 398
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=55.49 E-value=1.9e+02 Score=32.66 Aligned_cols=177 Identities=12% Similarity=0.022 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHhhcC-----CCCCHHHHHHHHHHHHhhCC-----HHHHHHHHHHHHHHhhcc
Q 001481 287 IQLKNWHDYLSFAEKQGDFDWVVKLYERCLIP-----CADYPEFWMRYVDFMESKGG-----REIASYALDRATQIFLKR 356 (1071)
Q Consensus 287 ~~~~~W~~y~~~~~~~g~~~~a~~~yerAL~~-----~p~~~~lW~~ya~~l~~~g~-----~e~A~~il~rAl~~~~~~ 356 (1071)
.....-.++++.+.+.|+.+..+.+.+..-.. .+....+--.+........+ ++-+.++.+.|.+- .+.
T Consensus 46 ~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~KakaaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~e-kRt 124 (411)
T KOG1463|consen 46 EKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAKAAKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKRE-KRT 124 (411)
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHH-hHH
Q ss_pred ch--HHHHHHHHHHHHhCCHHHHHHHHHHHhhcc-----ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccC
Q 001481 357 LP--VIHLFNARYKEQIGDTSAARAAFPESYIDS-----DSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKF 429 (1071)
Q Consensus 357 ~p--~i~~~~a~~e~~~g~~~~A~~~~~~al~~~-----~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~ 429 (1071)
.- .+-..++.++...++|.+|..+....+.++ ....+++.+.-...+....++.+|+..+-.|........+.
T Consensus 125 FLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcp 204 (411)
T KOG1463|consen 125 FLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCP 204 (411)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccC
Q ss_pred CCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhC
Q 001481 430 HTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHV 464 (1071)
Q Consensus 430 p~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~~~ 464 (1071)
|..--..-...-++.-.-+||..|..+|-.|++-+
T Consensus 205 PqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf 239 (411)
T KOG1463|consen 205 PQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGF 239 (411)
T ss_pred HHHHHHHHHhccceeecccccchHHHHHHHHHccc
No 399
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=55.21 E-value=33 Score=25.13 Aligned_cols=32 Identities=13% Similarity=-0.074 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHH--HHHHHhhCCC
Q 001481 434 LLYVQFSRLTYTTTGSADNARDI--LIDGIKHVPN 466 (1071)
Q Consensus 434 ~l~~~~A~~~~~~~g~~e~Ar~i--~e~al~~~P~ 466 (1071)
+.|..+|..+. ..|++++|+++ |+-+....+.
T Consensus 2 e~~y~~a~~~y-~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 2 EYLYGLAYNFY-QKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHH-HTT-HHHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHhccc
Confidence 45677888877 99999999999 5577666654
No 400
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=54.25 E-value=20 Score=23.92 Aligned_cols=19 Identities=26% Similarity=0.134 Sum_probs=7.9
Q ss_pred HHHHHHHHhCCHHHHHHHH
Q 001481 363 FNARYKEQIGDTSAARAAF 381 (1071)
Q Consensus 363 ~~a~~e~~~g~~~~A~~~~ 381 (1071)
.++..+...|++++|+.++
T Consensus 6 ~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHcCCHHHHHHHH
Confidence 3334444444444444433
No 401
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=54.24 E-value=52 Score=26.48 Aligned_cols=25 Identities=12% Similarity=0.113 Sum_probs=12.5
Q ss_pred HHHhCCHHHHHHHHHHHhhccChhhH
Q 001481 368 KEQIGDTSAARAAFPESYIDSDSRFI 393 (1071)
Q Consensus 368 e~~~g~~~~A~~~~~~al~~~~p~~~ 393 (1071)
..+.|++++|+...+.++ ++.|++.
T Consensus 11 ~ykl~~Y~~A~~~~~~lL-~~eP~N~ 35 (53)
T PF14853_consen 11 HYKLGEYEKARRYCDALL-EIEPDNR 35 (53)
T ss_dssp HHHTT-HHHHHHHHHHHH-HHTTS-H
T ss_pred HHHhhhHHHHHHHHHHHH-hhCCCcH
Confidence 345555555555555555 4455443
No 402
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=53.88 E-value=1.2e+02 Score=29.26 Aligned_cols=34 Identities=15% Similarity=-0.053 Sum_probs=18.1
Q ss_pred CcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh
Q 001481 53 DDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARL 86 (1071)
Q Consensus 53 ~~~~~a~~vyeraL~~~P~s~~lW~~~a~~e~~~ 86 (1071)
+....+...++.++...+.+..+-..++.++.+.
T Consensus 21 ~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 21 NLLEELIPYLESALKLNSENPALQTKLIELYAKY 54 (140)
T ss_pred CcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH
Confidence 3444455555555555555555555555555443
No 403
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=53.49 E-value=43 Score=43.40 Aligned_cols=102 Identities=10% Similarity=0.005 Sum_probs=0.0
Q ss_pred HHHHHhCCHHHHHHHHHHHhhccCh----hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHH
Q 001481 366 RYKEQIGDTSAARAAFPESYIDSDS----RFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSR 441 (1071)
Q Consensus 366 ~~e~~~g~~~~A~~~~~~al~~~~p----~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~ 441 (1071)
+.......|+.|...|++.. +..| +..-.+..=+.++.+......- ..|..|+..+..--+.+..|.-|+..|.
T Consensus 483 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (932)
T PRK13184 483 DAFLAEKLYDQALIFYRRIR-ESFPGRKEGYEAQFRLGITLLEKASEQGDP-RDFTQALSEFSYLHGGVGAPLEYLGKAL 560 (932)
T ss_pred HHHHhhHHHHHHHHHHHHHh-hcCCCcccchHHHHHhhHHHHHHHHhcCCh-HHHHHHHHHHHHhcCCCCCchHHHhHHH
Q ss_pred HHHhhcCCHHHHHHHHHHHHhhCCChHHH
Q 001481 442 LTYTTTGSADNARDILIDGIKHVPNCKLL 470 (1071)
Q Consensus 442 ~~~~~~g~~e~Ar~i~e~al~~~P~~~~l 470 (1071)
+|. +.|++++-.++|+.|++.+|..+.+
T Consensus 561 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (932)
T PRK13184 561 VYQ-RLGEYNEEIKSLLLALKRYSQHPEI 588 (932)
T ss_pred HHH-HhhhHHHHHHHHHHHHHhcCCCCcc
No 404
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=53.14 E-value=65 Score=38.13 Aligned_cols=46 Identities=9% Similarity=-0.086 Sum_probs=32.2
Q ss_pred HHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001481 376 AARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALET 422 (1071)
Q Consensus 376 ~A~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~ 422 (1071)
.|+.-...|+ .++|...++|+.+++++..++.+.+|..+...+...
T Consensus 429 ~AlrDch~Al-rln~s~~kah~~la~aL~el~r~~eal~~~~alq~~ 474 (758)
T KOG1310|consen 429 LALRDCHVAL-RLNPSIQKAHFRLARALNELTRYLEALSCHWALQMS 474 (758)
T ss_pred HHHHhHHhhc-cCChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhc
Confidence 3444444556 667777788888888888888888888777766655
No 405
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.46 E-value=5.8e+02 Score=32.17 Aligned_cols=77 Identities=10% Similarity=0.018 Sum_probs=45.5
Q ss_pred HHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcCCC
Q 001481 29 FIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPL--CYGYWRKYADHKARLCSIDKVVEVFERAVQSATYS 106 (1071)
Q Consensus 29 al~~nP~d~~~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P~--s~~lW~~~a~~e~~~~~~e~A~~lferAL~~~P~s 106 (1071)
+...++.|---|+.-- +.+++|..+-+.....-|. --+.|+.|+++++..+++++|-.++-+.+ .++
T Consensus 354 a~~~~~~Dhi~Wll~~--------k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~---gn~ 422 (846)
T KOG2066|consen 354 AKERDQEDHIDWLLEK--------KKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKML---GNN 422 (846)
T ss_pred EeecCcchhHHHHHHh--------hHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHh---cch
Confidence 3345666666664321 3455665544443333332 34689999999988888877776655444 456
Q ss_pred HHHHHHHHHH
Q 001481 107 VDVWFHYCSL 116 (1071)
Q Consensus 107 ~~lW~~y~~~ 116 (1071)
...|.....-
T Consensus 423 ~~eWe~~V~~ 432 (846)
T KOG2066|consen 423 AAEWELWVFK 432 (846)
T ss_pred HHHHHHHHHH
Confidence 6777655543
No 406
>KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only]
Probab=51.27 E-value=2.8e+02 Score=33.51 Aligned_cols=72 Identities=10% Similarity=0.044 Sum_probs=52.2
Q ss_pred CCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCh-HHHHHHHHHHHHHcCCCCchhhHHHHHHHhhccCC
Q 001481 429 FHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNC-KLLLEELIKFTMVHGGRSHISIVDAVISNALYSRP 502 (1071)
Q Consensus 429 ~p~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~~~P~~-~~lw~~~~~~e~~~g~~~~a~~~r~l~e~Al~~~~ 502 (1071)
......+|-.||.... +.+++..||.-|.++++.-..+ +++....+++. .-|-...+.-+|..|+......|
T Consensus 583 ~iD~f~aW~AWGlA~L-k~e~~aaAR~KFkqafklkgedipdvi~diin~i-eGgpp~dVq~Vrem~dhlak~ap 655 (1141)
T KOG1811|consen 583 GIDTFGAWHAWGLACL-KAENLAAAREKFKQAFKLKGEDIPDVIFDIINLI-EGGPPRDVQDVREMLDHLAKPAP 655 (1141)
T ss_pred CCCcccHHHHHHHHHH-HhhhHHHHHHHHHHHhCCCCCccchHHHHHHHhh-cCCCcchHHHHHHHHHHhccCCc
Confidence 4456678999999988 9999999999999999887654 45555555543 22334455567788888776544
No 407
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=51.19 E-value=22 Score=30.89 Aligned_cols=19 Identities=16% Similarity=0.422 Sum_probs=16.5
Q ss_pred hcCCHHHHHHHHHHHHhhC
Q 001481 446 TTGSADNARDILIDGIKHV 464 (1071)
Q Consensus 446 ~~g~~e~Ar~i~e~al~~~ 464 (1071)
..|++++|+.+|..||+.|
T Consensus 18 ~~gny~eA~~lY~~ale~~ 36 (75)
T cd02680 18 EKGNAEEAIELYTEAVELC 36 (75)
T ss_pred HhhhHHHHHHHHHHHHHHH
Confidence 7899999999999998654
No 408
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=50.95 E-value=4.2e+02 Score=30.06 Aligned_cols=92 Identities=12% Similarity=0.080 Sum_probs=54.2
Q ss_pred HHHhCCHHHHHHHHHHHhhccC----h-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCC-cHHHHHHHHH
Q 001481 368 KEQIGDTSAARAAFPESYIDSD----S-RFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHT-LPLLYVQFSR 441 (1071)
Q Consensus 368 e~~~g~~~~A~~~~~~al~~~~----p-~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~-~~~l~~~~A~ 441 (1071)
.+..++.++|.+++++.++.+. | ....+....+.+.-..|++++++++.+.+-+.+......+. -..-|+..+.
T Consensus 85 ~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~lss 164 (380)
T KOG2908|consen 85 SEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSLSS 164 (380)
T ss_pred HHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHHHH
Confidence 3456688888888888764322 2 12222334455555779999999999888776543333222 2233444555
Q ss_pred HHHhhcCCHHHHHHHHHHHHh
Q 001481 442 LTYTTTGSADNARDILIDGIK 462 (1071)
Q Consensus 442 ~~~~~~g~~e~Ar~i~e~al~ 462 (1071)
-|+...|++..+ |..+|.
T Consensus 165 qYyk~~~d~a~y---Yr~~L~ 182 (380)
T KOG2908|consen 165 QYYKKIGDFASY---YRHALL 182 (380)
T ss_pred HHHHHHHhHHHH---HHHHHH
Confidence 555567777654 444544
No 409
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=50.41 E-value=7.4e+02 Score=32.79 Aligned_cols=50 Identities=14% Similarity=0.159 Sum_probs=34.9
Q ss_pred HHHHH-HHHHHHhhCCC-hHHHHHHHHHHHHHcCCCCchhhHHHHHHHhhccCC
Q 001481 451 DNARD-ILIDGIKHVPN-CKLLLEELIKFTMVHGGRSHISIVDAVISNALYSRP 502 (1071)
Q Consensus 451 e~Ar~-i~e~al~~~P~-~~~lw~~~~~~e~~~g~~~~a~~~r~l~e~Al~~~~ 502 (1071)
++... +++.+-+..|- -..+|..+..|+...+++.++. ...|+-|.....
T Consensus 1083 ~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~Rkaa--tvMYEyamrl~s 1134 (1480)
T KOG4521|consen 1083 QEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAA--TVMYEYAMRLES 1134 (1480)
T ss_pred HHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHH--HHHHHHHHHhcc
Confidence 44444 67777666664 3457788888899999988774 667788876544
No 410
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=50.25 E-value=50 Score=38.99 Aligned_cols=88 Identities=13% Similarity=-0.032 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHhhccChhhHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhhcCCH
Q 001481 374 TSAARAAFPESYIDSDSRFIEKVTFKANMERRL---GNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSA 450 (1071)
Q Consensus 374 ~~~A~~~~~~al~~~~p~~~~~w~~~a~le~~~---g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~g~~ 450 (1071)
...|+..|.+++ ...|.....+..++.++.+. |+.-.|..-.-.|+.+ .+...++|..+++++. ..+++
T Consensus 390 ~~~~i~~~s~a~-q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrl------n~s~~kah~~la~aL~-el~r~ 461 (758)
T KOG1310|consen 390 VSGAISHYSRAI-QYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRL------NPSIQKAHFRLARALN-ELTRY 461 (758)
T ss_pred HHHHHHHHHHHh-hhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccC------ChHHHHHHHHHHHHHH-HHhhH
Confidence 345677788887 44566667777777766654 4444455555556665 6777889999999998 99999
Q ss_pred HHHHHHHHHHHhhCCChHH
Q 001481 451 DNARDILIDGIKHVPNCKL 469 (1071)
Q Consensus 451 e~Ar~i~e~al~~~P~~~~ 469 (1071)
.+|..+...+...+|.+..
T Consensus 462 ~eal~~~~alq~~~Ptd~a 480 (758)
T KOG1310|consen 462 LEALSCHWALQMSFPTDVA 480 (758)
T ss_pred HHhhhhHHHHhhcCchhhh
Confidence 9999998888888886654
No 411
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=50.05 E-value=1.2e+02 Score=37.43 Aligned_cols=174 Identities=11% Similarity=0.002 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHhhcC-----CCCCHHHHHHHHHHHHhh---CCHHHHHHHHHHHHHHhhccchHHHH
Q 001481 291 NWHDYLSFAEKQGDFDWVVKLYERCLIP-----CADYPEFWMRYVDFMESK---GGREIASYALDRATQIFLKRLPVIHL 362 (1071)
Q Consensus 291 ~W~~y~~~~~~~g~~~~a~~~yerAL~~-----~p~~~~lW~~ya~~l~~~---g~~e~A~~il~rAl~~~~~~~p~i~~ 362 (1071)
+-..+..-+...-+++..+.+.+..-.. .-....+-+.|+..+.+. |+.+.|+++.-.+++.-.+-.|++++
T Consensus 203 ~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapDm~C 282 (1226)
T KOG4279|consen 203 TVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPDMYC 282 (1226)
T ss_pred HHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCceee
Confidence 3334444444455666655555443221 112334555666666655 56688888888888754445677777
Q ss_pred HHHHHHH---------HhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHHHhhhccC
Q 001481 363 FNARYKE---------QIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLG----NFVAACDTYKEALETAAEQRKF 429 (1071)
Q Consensus 363 ~~a~~e~---------~~g~~~~A~~~~~~al~~~~p~~~~~w~~~a~le~~~g----~~~~A~~~y~~Al~~~~~~~~~ 429 (1071)
.-++++. -.+..+-|.+.|++|. ++.|.. ..=++++.+++-.| +-.+.+.+--+.-.++..+- .
T Consensus 283 l~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaF-eveP~~-~sGIN~atLL~aaG~~Fens~Elq~IgmkLn~LlgrKG-~ 359 (1226)
T KOG4279|consen 283 LCGRIYKDMFIASNYTDAESLNHAIEWYRKAF-EVEPLE-YSGINLATLLRAAGEHFENSLELQQIGMKLNSLLGRKG-A 359 (1226)
T ss_pred eechhhhhhhhccCCcchhhHHHHHHHHHHHh-ccCchh-hccccHHHHHHHhhhhccchHHHHHHHHHHHHHhhccc-h
Confidence 7666542 1334567889999999 666632 12234444444333 22222222222111111110 0
Q ss_pred CCcHHHHHHHHHHHH--hhcCCHHHHHHHHHHHHhhCCCh
Q 001481 430 HTLPLLYVQFSRLTY--TTTGSADNARDILIDGIKHVPNC 467 (1071)
Q Consensus 430 p~~~~l~~~~A~~~~--~~~g~~e~Ar~i~e~al~~~P~~ 467 (1071)
-..-.-|-..|.++. ...+|+.+|...-+..+++.|..
T Consensus 360 leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk~P~ 399 (1226)
T KOG4279|consen 360 LEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKLKPPV 399 (1226)
T ss_pred HHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhccCCce
Confidence 001111112222221 13688999999888888887743
No 412
>PF12144 Med12-PQL: Eukaryotic Mediator 12 catenin-binding domain; InterPro: IPR021989 This domain is found in eukaryotes, and is typically between 325 and 354 amino acids in length. It is found in the C-terminal region of the mediator of RNA polymerase II transcription subunit 12. Both development and carcinogenesis are driven by signal transduction within the canonical Wnt/beta-catenin pathway through both programmed and unprogrammed changes in gene transcription. Beta-catenin physically and functionally targets this PQL (proline-, glutamine-, leucine-rich) region of the Med12 subunit of Mediator to activate transcription. The beta-catenin transactivation domain binds directly to isolated Med12 and intact Mediator both in vitro and in vivo, and Mediator is recruited to Wnt-responsive genes in a beta-catenin-dependent manner. ; GO: 0008013 beta-catenin binding, 0016592 mediator complex
Probab=49.73 E-value=18 Score=36.82 Aligned_cols=65 Identities=8% Similarity=-0.032 Sum_probs=38.6
Q ss_pred CcccCCCCccc-ccCCccCC-CCCCccccccccCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCcc
Q 001481 828 NWHEQQNPDRV-HRDLRFGY-RGHSHKRQHQQRRFSSQRYPRNESGDQMPMNSRFPSQPLPSQNPQA 892 (1071)
Q Consensus 828 n~~~~~~~~~~-~~~p~~~~-~~~~~~~~~qq~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~q~ 892 (1071)
..+++.....| .+++..|+ .+.+|+..+++++.....+.+++.+...+..++.++........|.
T Consensus 109 q~~q~~p~~~Y~~lq~aqGYTmYgt~M~LQQ~~~q~~gvvsPsY~~r~Y~~aHp~SNPaLmerlRQm 175 (204)
T PF12144_consen 109 QVRQMTPSPQYPGLQQAQGYTMYGTQMPLQQHPQQGGGVVSPSYNSRTYQAAHPSSNPALMERLRQM 175 (204)
T ss_pred hhccCCCCCCCcccccccCcccccccccccccCCCCCeeeCCCCCCCCCCCCCCCCCchhhhhhhhc
Confidence 35566666666 46776787 6678888887776544455666666655555544444443333333
No 413
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=49.40 E-value=2.8e+02 Score=32.33 Aligned_cols=57 Identities=9% Similarity=-0.196 Sum_probs=37.4
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHHHhhccchH--HHHHHHH--HHHHhCCHHHHHHHHHHHhh
Q 001481 329 YVDFMESKGGREIASYALDRATQIFLKRLPV--IHLFNAR--YKEQIGDTSAARAAFPESYI 386 (1071)
Q Consensus 329 ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~--i~~~~a~--~e~~~g~~~~A~~~~~~al~ 386 (1071)
.+..+...+++..|..+|+..+.. .+.... .+...+. .++..-++.+|.+.+++.++
T Consensus 137 ~a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 137 RAKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 344566778899999999988875 333332 1112222 23557788999999998874
No 414
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.16 E-value=1.7e+02 Score=36.89 Aligned_cols=53 Identities=17% Similarity=0.047 Sum_probs=38.5
Q ss_pred HHhCCHHHHHHHHHHHhhccCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 001481 369 EQIGDTSAARAAFPESYIDSDS-RFIEKVTFKANMERRLGNFVAACDTYKEALETA 423 (1071)
Q Consensus 369 ~~~g~~~~A~~~~~~al~~~~p-~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~ 423 (1071)
.+..-++-|..+-+.- ..++ ....+..+||+.+++.|++++|..-|-++|..+
T Consensus 345 ~kK~ly~~Ai~LAk~~--~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l 398 (933)
T KOG2114|consen 345 FKKNLYKVAINLAKSQ--HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL 398 (933)
T ss_pred HHhhhHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC
Confidence 3444555566554432 2233 345778999999999999999999999999875
No 415
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.38 E-value=1.3e+02 Score=27.53 Aligned_cols=68 Identities=16% Similarity=0.171 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcC
Q 001481 409 FVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLLLEELIKFTMVHG 482 (1071)
Q Consensus 409 ~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~~~P~~~~lw~~~~~~e~~~g 482 (1071)
.+.-...+++-++.+.... .+.-|-++..+|.++. ..|+.+.|..-|+.--..+|.+.. |++|+++.+
T Consensus 49 ~e~Q~~~le~~~ek~~ak~-~~vpPG~HAhLGlLys-~~G~~e~a~~eFetEKalFPES~~----fmDFLmk~~ 116 (121)
T COG4259 49 KEAQTAALEKYLEKIGAKN-GAVPPGYHAHLGLLYS-NSGKDEQAVREFETEKALFPESGV----FMDFLMKNG 116 (121)
T ss_pred HHHHHHHHHHHHHHHhhcC-CCCCCcHHHHHHHHHh-hcCChHHHHHHHHHhhhhCccchh----HHHHHHHcc
Confidence 3444445555555543222 3455677888888887 999999999999998889999988 667776654
No 416
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=47.58 E-value=2.9e+02 Score=27.55 Aligned_cols=49 Identities=20% Similarity=0.142 Sum_probs=20.8
Q ss_pred hCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001481 371 IGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEAL 420 (1071)
Q Consensus 371 ~g~~~~A~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al 420 (1071)
.++++++..++.... .+.|+...+-+.-+.+....|++++|+.+|+...
T Consensus 23 ~~d~~D~e~lLdALr-vLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~ 71 (153)
T TIGR02561 23 SADPYDAQAMLDALR-VLRPNLKELDMFDGWLLIARGNYDEAARILRELL 71 (153)
T ss_pred cCCHHHHHHHHHHHH-HhCCCccccchhHHHHHHHcCCHHHHHHHHHhhh
Confidence 344444444444332 3344444333333334444444444444444433
No 417
>PF12854 PPR_1: PPR repeat
Probab=47.05 E-value=36 Score=24.38 Aligned_cols=26 Identities=12% Similarity=0.094 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001481 393 IEKVTFKANMERRLGNFVAACDTYKE 418 (1071)
Q Consensus 393 ~~~w~~~a~le~~~g~~~~A~~~y~~ 418 (1071)
...|..++..+.+.|++++|+++|++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 44677777778888888888888875
No 418
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=46.09 E-value=2.6e+02 Score=29.99 Aligned_cols=98 Identities=12% Similarity=-0.048 Sum_probs=65.8
Q ss_pred hcCCHHHHHHHHHHHHhhC---CCh---------HHHHHHHHHHHHHcCCCCchhhHHHHHHHhhccCCcccccCChhhH
Q 001481 446 TTGSADNARDILIDGIKHV---PNC---------KLLLEELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDV 513 (1071)
Q Consensus 446 ~~g~~e~Ar~i~e~al~~~---P~~---------~~lw~~~~~~e~~~g~~~~a~~~r~l~e~Al~~~~d~~~~l~~~~~ 513 (1071)
..|+++.|.++.+.||+.. |+. .+-...|+.-....|..-+.- +...|+.... .-.+++...
T Consensus 95 D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~-~~~~~~~l~~-----~~dmpd~vr 168 (230)
T PHA02537 95 DIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPY-FLRVFLDLTT-----EWDMPDEVR 168 (230)
T ss_pred eccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChH-HHHHHHHHHh-----cCCCChHHH
Confidence 7999999999999999963 432 133445666666667544332 2233444332 135666677
Q ss_pred HHHHHHHHHHHH---------HhcCCHHHHHHHHHHHHHhCCCCcc
Q 001481 514 EDISSLYLQQFL---------DLCGTIHDIRNAWNQHIKLFPHTVR 550 (1071)
Q Consensus 514 ~~lw~~~l~~~e---------~~~G~~e~a~~~~~ra~~~~p~~~~ 550 (1071)
..++.... ... .+.+++..|...++||+++.|+.+-
T Consensus 169 AKl~K~~G-~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~GV 213 (230)
T PHA02537 169 AKLYKAAG-YLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCGV 213 (230)
T ss_pred HHHHHHHH-HHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCCh
Confidence 77777766 655 3567889999999999999998543
No 419
>KOG1972 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.62 E-value=7.4e+02 Score=31.42 Aligned_cols=96 Identities=13% Similarity=0.001 Sum_probs=65.3
Q ss_pred cCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCCC-------------------------------chhhHHHHHH
Q 001481 447 TGSADNARDILIDGIKHVPNCKLLLEELIKFTMVHGGRS-------------------------------HISIVDAVIS 495 (1071)
Q Consensus 447 ~g~~e~Ar~i~e~al~~~P~~~~lw~~~~~~e~~~g~~~-------------------------------~a~~~r~l~e 495 (1071)
.++.++-| .++.++..++.+...|..|+.++....... -....+..|.
T Consensus 743 f~~~~k~r-F~e~~v~~fsrn~~~~e~wa~l~s~l~qk~r~rl~~~k~~~~~~n~ai~~~~~i~e~~~~~i~~a~t~mf~ 821 (913)
T KOG1972|consen 743 FYNLPKVR-FFEEGVTLFSRNAFGWELWAELESELRQKIRKRLSSTKNEVDGRNAAIHAEQVIPETGDDQIMSANTGMFR 821 (913)
T ss_pred ccccccee-eeccchhhccccchhHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhccccccccchHHHHhHHHHHHHH
Confidence 46667777 777789999999999999988876531100 0112233443
Q ss_pred HhhccCCcccccCChhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 001481 496 NALYSRPDVLKVFSLEDVEDISSLYLQQFLDLCGTIHDIRNAWNQHIKLFPHT 548 (1071)
Q Consensus 496 ~Al~~~~d~~~~l~~~~~~~lw~~~l~~~e~~~G~~e~a~~~~~ra~~~~p~~ 548 (1071)
.|..... ...++. ...+|..|+ ++....++.+...+++-+|+..||-.
T Consensus 822 n~~~si~--d~~l~~--~~~~WR~yl-~~lskl~~~~~~~~~~tkA~~sCpW~ 869 (913)
T KOG1972|consen 822 NADRSIL--DEELPD--ENSKWRDYL-EALSKLLNKERSKAASTKALDSCPWA 869 (913)
T ss_pred HHHHhcc--cccCCc--chhHHHHHH-HHHHHhhhhhhhHHHHHHHhhcCchH
Confidence 3332111 123333 347999999 99999999999999999999999973
No 420
>PF13041 PPR_2: PPR repeat family
Probab=44.18 E-value=91 Score=24.14 Aligned_cols=28 Identities=4% Similarity=0.195 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 001481 75 YWRKYADHKARLCSIDKVVEVFERAVQS 102 (1071)
Q Consensus 75 lW~~~a~~e~~~~~~e~A~~lferAL~~ 102 (1071)
.|..++....+.+++++|.++|++..+.
T Consensus 5 ~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 5 TYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 4666666666667777777777766665
No 421
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=43.83 E-value=35 Score=26.30 Aligned_cols=25 Identities=24% Similarity=0.448 Sum_probs=21.7
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHh
Q 001481 437 VQFSRLTYTTTGSADNARDILIDGIK 462 (1071)
Q Consensus 437 ~~~A~~~~~~~g~~e~Ar~i~e~al~ 462 (1071)
+.+|..|. ..||.+.||++++..+.
T Consensus 3 LdLA~ayi-e~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYI-EMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHH-HcCChHHHHHHHHHHHH
Confidence 46778877 99999999999999984
No 422
>KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only]
Probab=43.63 E-value=2.7e+02 Score=33.64 Aligned_cols=70 Identities=16% Similarity=0.127 Sum_probs=53.3
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhhc--CCHHHHHHHHHHHHhhCCC
Q 001481 391 RFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTT--GSADNARDILIDGIKHVPN 466 (1071)
Q Consensus 391 ~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~--g~~e~Ar~i~e~al~~~P~ 466 (1071)
+...+|..|+-...+.+++..||.-|++|+++- ....+.+...+..+-+ -- .++...|.+|+...+-.|.
T Consensus 585 D~f~aW~AWGlA~Lk~e~~aaAR~KFkqafklk-----gedipdvi~diin~ie-Ggpp~dVq~Vrem~dhlak~apt 656 (1141)
T KOG1811|consen 585 DTFGAWHAWGLACLKAENLAAAREKFKQAFKLK-----GEDIPDVIFDIINLIE-GGPPRDVQDVREMLDHLAKPAPT 656 (1141)
T ss_pred CcccHHHHHHHHHHHhhhHHHHHHHHHHHhCCC-----CCccchHHHHHHHhhc-CCCcchHHHHHHHHHHhccCCcc
Confidence 567789999999999999999999999999872 2345666666544432 11 3688899999998887774
No 423
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=42.70 E-value=1.9e+02 Score=33.51 Aligned_cols=49 Identities=14% Similarity=0.129 Sum_probs=28.2
Q ss_pred HHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHH
Q 001481 365 ARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACD 414 (1071)
Q Consensus 365 a~~e~~~g~~~~A~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~ 414 (1071)
..++.+.++.+-|+..-.+.| .++|.+.+.++.-+.+.+++..+.+|.+
T Consensus 235 v~CYL~~rkpdlALnh~hrsI-~lnP~~frnHLrqAavfR~LeRy~eAar 283 (569)
T PF15015_consen 235 VTCYLRMRKPDLALNHSHRSI-NLNPSYFRNHLRQAAVFRRLERYSEAAR 283 (569)
T ss_pred HHhhhhcCCCchHHHHHhhhh-hcCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666666 5566666555555555555544444433
No 424
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=42.55 E-value=5.4e+02 Score=28.94 Aligned_cols=182 Identities=13% Similarity=-0.006 Sum_probs=92.5
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhccch-HHHHHHHHH--HHHhCCHHHHHHHHHHHh
Q 001481 309 VKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLP-VIHLFNARY--KEQIGDTSAARAAFPESY 385 (1071)
Q Consensus 309 ~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p-~i~~~~a~~--e~~~g~~~~A~~~~~~al 385 (1071)
...+.+--...|+..+..+.||+|....|++..|..++---.....+..+ .+-..|+++ |...-+++.|++-+.+..
T Consensus 115 l~~L~e~ynf~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~lsalwGKlASEIL~qnWd~A~edL~rLr 194 (432)
T KOG2758|consen 115 LQHLQEHYNFTPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLSALWGKLASEILTQNWDGALEDLTRLR 194 (432)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 33334433456778889999999999999998887655333322122222 344456665 445778888988887775
Q ss_pred hccChhh---------HHHHH-HHHHHHH--HcCCHHHHHHHH------HHHHHHHhhhccCCCcHHHHHHHHHHHHhhc
Q 001481 386 IDSDSRF---------IEKVT-FKANMER--RLGNFVAACDTY------KEALETAAEQRKFHTLPLLYVQFSRLTYTTT 447 (1071)
Q Consensus 386 ~~~~p~~---------~~~w~-~~a~le~--~~g~~~~A~~~y------~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~ 447 (1071)
+-++.++ -+.|+ .|+-|-. .-++-|..+++| -.||.. .+|.+.-.+|..--...
T Consensus 195 e~IDs~~f~~~~~~l~qRtWLiHWslfv~fnhpkgrd~iid~fly~p~YLNaIQt--------~cPhllRYLatAvvtnk 266 (432)
T KOG2758|consen 195 EYIDSKSFSTSAQQLQQRTWLIHWSLFVFFNHPKGRDTIIDMFLYQPPYLNAIQT--------SCPHLLRYLATAVVTNK 266 (432)
T ss_pred HHHcccccccHHHHHHHHHHHHHHHHHhhccCCChhhHHHHHHccCHHHHHHHHh--------hCHHHHHHHHHHhhcch
Confidence 4333221 13343 3333221 123445555543 345543 34555555555443122
Q ss_pred CCHHHHHHHHHHHHhhCCC-hHHHHHHHHHHHHHcCCCCchhhHHHHHHHhh
Q 001481 448 GSADNARDILIDGIKHVPN-CKLLLEELIKFTMVHGGRSHISIVDAVISNAL 498 (1071)
Q Consensus 448 g~~e~Ar~i~e~al~~~P~-~~~lw~~~~~~e~~~g~~~~a~~~r~l~e~Al 498 (1071)
.....+.+-+-+.+..... ..+-...++..+.-.-|+++|.....-++..|
T Consensus 267 ~~rr~~lkdlvkVIqqE~ysYkDPiteFl~clyvn~DFdgAq~kl~eCeeVl 318 (432)
T KOG2758|consen 267 RRRRNRLKDLVKVIQQESYSYKDPITEFLECLYVNYDFDGAQKKLRECEEVL 318 (432)
T ss_pred HhhHHHHHHHHHHHHHhccccCCcHHHHHHHHhhccchHHHHHHHHHHHHHH
Confidence 4444555555555543221 11112233333333446666653333334433
No 425
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=42.40 E-value=5.5e+02 Score=29.00 Aligned_cols=52 Identities=10% Similarity=0.016 Sum_probs=33.9
Q ss_pred CcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhC---CChHHHHHHHHHHHHHcCC
Q 001481 431 TLPLLYVQFSRLTYTTTGSADNARDILIDGIKHV---PNCKLLLEELIKFTMVHGG 483 (1071)
Q Consensus 431 ~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~~~---P~~~~lw~~~~~~e~~~g~ 483 (1071)
.-.++++..|.++. ..||.+.|.+.|.+..++. +.-.++....+++-.-.+|
T Consensus 102 ev~ea~~~kaeYyc-qigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D 156 (393)
T KOG0687|consen 102 EVREAMLRKAEYYC-QIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLD 156 (393)
T ss_pred HHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhcc
Confidence 34567888888877 8888888888777766652 3344555555555544444
No 426
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=42.20 E-value=1.2e+02 Score=36.96 Aligned_cols=76 Identities=18% Similarity=0.159 Sum_probs=40.4
Q ss_pred CHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhhcCCHHH
Q 001481 373 DTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADN 452 (1071)
Q Consensus 373 ~~~~A~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~g~~e~ 452 (1071)
.++.++.+.+.-+ -....+....+..+.++...|..+.|-.+|++.+.. ++. +.++.||+-++ ..|-...
T Consensus 23 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~--~~~~~~~~~~~-~~~~~~~ 92 (578)
T PRK15490 23 KLAQAVALIDSEL-PTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQ------NND--EARYEYARRLY-NTGLAKD 92 (578)
T ss_pred hHHHHHHHHHHhC-CccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHh------CCc--chHHHHHHHHH-hhhhhhH
Confidence 3444444444333 111223333444555555556666666666666655 333 56666666665 6666666
Q ss_pred HHHHHH
Q 001481 453 ARDILI 458 (1071)
Q Consensus 453 Ar~i~e 458 (1071)
|+.++.
T Consensus 93 ~~~~~~ 98 (578)
T PRK15490 93 AQLILK 98 (578)
T ss_pred HHHHHH
Confidence 666655
No 427
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=41.10 E-value=38 Score=22.83 Aligned_cols=27 Identities=19% Similarity=0.220 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001481 395 KVTFKANMERRLGNFVAACDTYKEALE 421 (1071)
Q Consensus 395 ~w~~~a~le~~~g~~~~A~~~y~~Al~ 421 (1071)
+|....+.+.+.|++++|.++|++..+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhH
Confidence 366677777888888888888887655
No 428
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=40.64 E-value=48 Score=24.70 Aligned_cols=29 Identities=24% Similarity=0.353 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001481 394 EKVTFKANMERRLGNFVAACDTYKEALET 422 (1071)
Q Consensus 394 ~~w~~~a~le~~~g~~~~A~~~y~~Al~~ 422 (1071)
+++..++.+....++|+.|..=|++|+++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 45777888888888899999988888887
No 429
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]
Probab=39.98 E-value=25 Score=44.92 Aligned_cols=10 Identities=30% Similarity=0.444 Sum_probs=4.6
Q ss_pred CCCCCCCCCC
Q 001481 790 SSSAPIQTRT 799 (1071)
Q Consensus 790 ~~~~~~~~~~ 799 (1071)
..+|++++++
T Consensus 1504 k~~p~ipt~q 1513 (2131)
T KOG4369|consen 1504 KIPPPIPTEQ 1513 (2131)
T ss_pred cCCCCCcHHH
Confidence 3445555444
No 430
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=39.13 E-value=5.2e+02 Score=27.83 Aligned_cols=48 Identities=15% Similarity=0.065 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhhc-CCCCCHHHHHHHHHHH-HhhCCHHHHHHHHHHHHHH
Q 001481 305 FDWVVKLYERCLI-PCADYPEFWMRYVDFM-ESKGGREIASYALDRATQI 352 (1071)
Q Consensus 305 ~~~a~~~yerAL~-~~p~~~~lW~~ya~~l-~~~g~~e~A~~il~rAl~~ 352 (1071)
+..|..+-+..|. .+|....+.++|+.|+ +..|+.++|+.+...|+..
T Consensus 149 Y~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~ 198 (236)
T PF00244_consen 149 YEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDE 198 (236)
T ss_dssp HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred hhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 4455555555432 3444556666676666 3457777777777766653
No 431
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=38.94 E-value=2.1e+02 Score=31.09 Aligned_cols=22 Identities=27% Similarity=0.258 Sum_probs=10.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH
Q 001481 400 ANMERRLGNFVAACDTYKEALE 421 (1071)
Q Consensus 400 a~le~~~g~~~~A~~~y~~Al~ 421 (1071)
|..+.+.|++++|.++|+.+..
T Consensus 185 A~ey~~~g~~~~A~~~l~~~~~ 206 (247)
T PF11817_consen 185 AEEYFRLGDYDKALKLLEPAAS 206 (247)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 3344444555555555555433
No 432
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=38.69 E-value=45 Score=22.46 Aligned_cols=26 Identities=12% Similarity=0.358 Sum_probs=15.8
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Q 001481 76 WRKYADHKARLCSIDKVVEVFERAVQ 101 (1071)
Q Consensus 76 W~~~a~~e~~~~~~e~A~~lferAL~ 101 (1071)
|..+++.+.+.+++++|.++|++..+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 55556666666666666666665544
No 433
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=38.27 E-value=1e+03 Score=30.80 Aligned_cols=98 Identities=10% Similarity=0.085 Sum_probs=61.4
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhC--CChhHHHHHHHHHHHhcCCCCCchHHHHHHHHHHH
Q 001481 79 YADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTF--EDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEI 156 (1071)
Q Consensus 79 ~a~~e~~~~~~e~A~~lferAL~~~P~s~~lW~~y~~~~~~~~--~~~e~ar~l~erAL~~~~~~~~s~~lW~~yi~fe~ 156 (1071)
++..+.+.|+.++|-.++.++= ..| +...-..++..+.+.. .+.-++...-++|-..-+.......-+..|+.|..
T Consensus 713 LL~sy~~~g~~erA~glwnK~Q-V~k-~~~~l~~LAsIlr~~n~evdvPe~q~e~ekas~~~~~f~ttt~~~~~~a~~a~ 790 (1088)
T KOG4318|consen 713 LLQSYLEEGRIERASGLWNKDQ-VSK-SPMKLFHLASILRRMNEEVDVPEIQAETEKASELRTLFPTTTCYYEGYAFFAT 790 (1088)
T ss_pred HHHHHHhhhHHHHHHhHHhhCc-CCc-chHHHHHHHHHHHhhchhccchhHHHHHHHHHhcccccccchHhhhhhHHHHh
Confidence 4445556677777777777665 223 4444445566655543 24556677777776665555555567778888887
Q ss_pred HccCHHHHHHHHHHHhc-cCCcc
Q 001481 157 SQQRWSSLAQIFVQTLR-FPSKK 178 (1071)
Q Consensus 157 ~~~~~~~a~~iy~ral~-~p~~~ 178 (1071)
.....+.+.++|.|+-. .+...
T Consensus 791 q~~qkkaAkk~f~r~eeq~~v~t 813 (1088)
T KOG4318|consen 791 QTEQKKAAKKCFERLEEQLTVST 813 (1088)
T ss_pred hHHHHHHHHHHHHHHHHccCCCc
Confidence 76667788999988853 33333
No 434
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=38.00 E-value=50 Score=25.48 Aligned_cols=25 Identities=16% Similarity=0.084 Sum_probs=15.9
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHHH
Q 001481 327 MRYVDFMESKGGREIASYALDRATQ 351 (1071)
Q Consensus 327 ~~ya~~l~~~g~~e~A~~il~rAl~ 351 (1071)
+.+|..|...|+.+.|+.+++..+.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 3456666666666666666666653
No 435
>KOG1938 consensus Protein with predicted involvement in meiosis (GSG1) [Cell cycle control, cell division, chromosome partitioning]
Probab=37.80 E-value=4.6e+02 Score=33.84 Aligned_cols=62 Identities=13% Similarity=0.050 Sum_probs=39.3
Q ss_pred HHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCC
Q 001481 403 ERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPN 466 (1071)
Q Consensus 403 e~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~~~P~ 466 (1071)
+...|....|.++|..|+..++...-......+++.++..+ .....+.|-..|.+.+..++.
T Consensus 326 ~s~anqp~ha~R~y~~ai~v~~~~~ws~~edh~~f~i~~~y--~l~~~D~a~~~f~~~i~~~~k 387 (960)
T KOG1938|consen 326 FSSANQPKHALRCYRQAIPVLKKPTWSFAEDHLYFTILHVY--LLCQEDDADEEFSKLIADCMK 387 (960)
T ss_pred cccCCChhHHHHHHHHHhhhcCCCCcchhHHhHHHhHHHhh--hhhcchhHHHHHHHHHhhhhh
Confidence 33456688999999999988643221222334455555532 455567787888888877664
No 436
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=37.79 E-value=7.2e+02 Score=29.00 Aligned_cols=121 Identities=10% Similarity=0.046 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHH-HHHHHHHhhcCCHHHHHHHHHHHHhhCCCh--HH
Q 001481 393 IEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYV-QFSRLTYTTTGSADNARDILIDGIKHVPNC--KL 469 (1071)
Q Consensus 393 ~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~-~~A~~~~~~~g~~e~Ar~i~e~al~~~P~~--~~ 469 (1071)
.+.|+.+...++..|.+...+..+..-+....=. ++...-.+.+ .+-+.+. ..+-++.|-+...+.. +|+. -.
T Consensus 169 ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLr-hd~e~qavLiN~LLr~yL-~n~lydqa~~lvsK~~--~pe~~snn 244 (493)
T KOG2581|consen 169 AKLYFYLYLSYELEGRLADIRSFLHALLRTATLR-HDEEGQAVLINLLLRNYL-HNKLYDQADKLVSKSV--YPEAASNN 244 (493)
T ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhc-CcchhHHHHHHHHHHHHh-hhHHHHHHHHHhhccc--CccccccH
Confidence 4556666666667788777777776666553211 1112222222 2333343 5677788877666553 4442 23
Q ss_pred HHHHHHHH----HHHcCCCCchhhHHHHHHHhhccCCcccccCChhhHHHHHHHHH
Q 001481 470 LLEELIKF----TMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYL 521 (1071)
Q Consensus 470 lw~~~~~~----e~~~g~~~~a~~~r~l~e~Al~~~~d~~~~l~~~~~~~lw~~~l 521 (1071)
-|..|.-. ..-.+++..|. ..|-.|+.+.|. ...+.-......|...+
T Consensus 245 e~ARY~yY~GrIkaiqldYssA~---~~~~qa~rkapq-~~alGf~q~v~k~~ivv 296 (493)
T KOG2581|consen 245 EWARYLYYLGRIKAIQLDYSSAL---EYFLQALRKAPQ-HAALGFRQQVNKLMIVV 296 (493)
T ss_pred HHHHHHHHHhhHHHhhcchhHHH---HHHHHHHHhCcc-hhhhhHHHHHHHHHHHH
Confidence 45444333 33346676664 888888887773 22333333334444443
No 437
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.64 E-value=4.7e+02 Score=26.87 Aligned_cols=130 Identities=16% Similarity=0.069 Sum_probs=0.0
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHHhhccch-HHHHHHHHHHHHhCCHHHHHHHHHHHhhccChhhHH---HHHHHHHH
Q 001481 327 MRYVDFMESKGGREIASYALDRATQIFLKRLP-VIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIE---KVTFKANM 402 (1071)
Q Consensus 327 ~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p-~i~~~~a~~e~~~g~~~~A~~~~~~al~~~~p~~~~---~w~~~a~l 402 (1071)
+.-+.-+...++.++|...|...-+.-....| -..+..+.+....|+...|...|..+-.....--+- +-++.+.+
T Consensus 62 flaAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~l 141 (221)
T COG4649 62 FLAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYL 141 (221)
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHH
Q ss_pred HHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Q 001481 403 ERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIK 462 (1071)
Q Consensus 403 e~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~ 462 (1071)
+...|.++....-.+-.... ..|-....--.+|..-+ ..|++.+|++.|.....
T Consensus 142 LvD~gsy~dV~srvepLa~d-----~n~mR~sArEALglAa~-kagd~a~A~~~F~qia~ 195 (221)
T COG4649 142 LVDNGSYDDVSSRVEPLAGD-----GNPMRHSAREALGLAAY-KAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HhccccHHHHHHHhhhccCC-----CChhHHHHHHHHhHHHH-hccchHHHHHHHHHHHc
No 438
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=37.41 E-value=4.1e+02 Score=27.71 Aligned_cols=29 Identities=24% Similarity=0.195 Sum_probs=21.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q 001481 396 VTFKANMERRLGNFVAACDTYKEALETAA 424 (1071)
Q Consensus 396 w~~~a~le~~~g~~~~A~~~y~~Al~~~~ 424 (1071)
+...+.+....|++++|+.-+++|.+.+.
T Consensus 32 ~s~~aI~~~H~~~~eeA~~~l~~a~~~v~ 60 (204)
T COG2178 32 LSGEAIFLLHRGDFEEAEKKLKKASEAVE 60 (204)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 44555566667888888888888877754
No 439
>PF12854 PPR_1: PPR repeat
Probab=37.37 E-value=55 Score=23.41 Aligned_cols=25 Identities=16% Similarity=0.324 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHH
Q 001481 74 GYWRKYADHKARLCSIDKVVEVFER 98 (1071)
Q Consensus 74 ~lW~~~a~~e~~~~~~e~A~~lfer 98 (1071)
-.|..++....+.|++++|.++|++
T Consensus 8 ~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 8 VTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 3455566666666666666666654
No 440
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=37.01 E-value=1.6e+02 Score=28.67 Aligned_cols=56 Identities=25% Similarity=0.274 Sum_probs=0.0
Q ss_pred HHHHHHhCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Q 001481 296 LSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQ 351 (1071)
Q Consensus 296 ~~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~ 351 (1071)
++.+-..|+.+...+++....+..--.+++.+.+|..|.+.|+..+|.+++.+|++
T Consensus 93 Ld~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 93 LDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp HHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
No 441
>PRK15338 type III secretion system regulator InvE; Provisional
Probab=36.60 E-value=7.2e+02 Score=28.67 Aligned_cols=151 Identities=14% Similarity=0.085 Sum_probs=85.6
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhc-cch-------HHHHHHHHHHHHhCCH--HHH
Q 001481 308 VVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLK-RLP-------VIHLFNARYKEQIGDT--SAA 377 (1071)
Q Consensus 308 a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~-~~p-------~i~~~~a~~e~~~g~~--~~A 377 (1071)
...++..++..+|+..++|+.+..++.+..-.++-++.++.|+..... ..+ ++-+ .|+.....+.. ..-
T Consensus 108 ~~~ll~~arq~FpD~SDl~~aLreLl~r~kL~~~~~~~le~al~~Le~e~~~K~ikAGINvAL-~Ak~Fs~~~~lsa~~L 186 (372)
T PRK15338 108 LEEFLRQARKLFPDPSDLVLVLRELLRRKQLEEIVRKKLESLLKHVEEETDPKTLKAGINCAL-KARLFGKALSLKPGLL 186 (372)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhCccCCHHHHHHHHHHHHHHHhhcCcHHHHhcCcHHH-HHHHHHhhcCCCHHHH
Confidence 347888888999999999999998777554445556666666654221 112 1111 12223334444 667
Q ss_pred HHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhhcC---CHHHHH
Q 001481 378 RAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTG---SADNAR 454 (1071)
Q Consensus 378 ~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~g---~~e~Ar 454 (1071)
|.+|...+ ..+-....+|-.|+.-+ ...+.+.+.....+|+..- =....|.+. -..+|.+.. +.+ -+..|-
T Consensus 187 R~lYR~Fl-~~d~~~~~iY~~Wieey-g~~~R~~il~Fl~~AL~~D-lqS~~Ps~~--~~EFG~l~~-~l~~LR~L~Sad 260 (372)
T PRK15338 187 RASYRQFL-QSESHEVEIYSDWIASY-GYQRRLVVLDFIEGSLLTD-IDANDASCS--RLEFGQLLR-RLTQLKMLRSAD 260 (372)
T ss_pred HHHHHHHH-hccCcHHHHHHHHHHHh-CccHHHHHHHHHHHHHHhH-HhcCCCCCC--HHHHHHHHH-HHHHHHHHHhhH
Confidence 88888888 55545566666666533 3345677888888887641 111233333 244444443 333 334455
Q ss_pred HHHHHHHhhCC
Q 001481 455 DILIDGIKHVP 465 (1071)
Q Consensus 455 ~i~e~al~~~P 465 (1071)
.+|-+-+...+
T Consensus 261 ~~F~~~~~~~~ 271 (372)
T PRK15338 261 LLFVKTLLSYP 271 (372)
T ss_pred HHHHHHHHhhH
Confidence 55555554433
No 442
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=36.26 E-value=1.3e+02 Score=26.43 Aligned_cols=42 Identities=10% Similarity=0.048 Sum_probs=32.0
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcC
Q 001481 440 SRLTYTTTGSADNARDILIDGIKHVPNCKLLLEELIKFTMVHG 482 (1071)
Q Consensus 440 A~~~~~~~g~~e~Ar~i~e~al~~~P~~~~lw~~~~~~e~~~g 482 (1071)
|.-++ ..+...+|..+|+++|++.++..+-|..+.-+...+.
T Consensus 13 GlkLY-~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~ 54 (80)
T PF10579_consen 13 GLKLY-HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHM 54 (80)
T ss_pred HHHHh-ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHH
Confidence 33344 7888999999999999999998887776665554443
No 443
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=36.24 E-value=2e+02 Score=34.69 Aligned_cols=86 Identities=12% Similarity=0.091 Sum_probs=53.1
Q ss_pred hhHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhh-----
Q 001481 391 RFIEKVTFKANMERRL--GNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKH----- 463 (1071)
Q Consensus 391 ~~~~~w~~~a~le~~~--g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~~----- 463 (1071)
.++.+...+++++.-. .+-..+..+|.+||......... ...-=|..+|.+++ +.+++.+|+..|-.|-..
T Consensus 275 ~YPmALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~n-~HvYPYty~gg~~y-R~~~~~eA~~~Wa~aa~Vi~~Yn 352 (618)
T PF05053_consen 275 RYPMALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYNN-HHVYPYTYLGGYYY-RHKRYREALRSWAEAADVIRKYN 352 (618)
T ss_dssp T-HHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCTT---SHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHHTTSB
T ss_pred hCchhhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhcC-CccccceehhhHHH-HHHHHHHHHHHHHHHHHHHHHcc
Confidence 4566677777776643 33467899999999986543321 11123455677777 999999999999888653
Q ss_pred -CCChHHHHHHHHHHH
Q 001481 464 -VPNCKLLLEELIKFT 478 (1071)
Q Consensus 464 -~P~~~~lw~~~~~~e 478 (1071)
+.++.++|..++++.
T Consensus 353 Y~reDeEiYKEfleIA 368 (618)
T PF05053_consen 353 YSREDEEIYKEFLEIA 368 (618)
T ss_dssp --GGGHHHHHHHHHHH
T ss_pred cCccHHHHHHHHHHHH
Confidence 234566777666654
No 444
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=35.82 E-value=54 Score=28.45 Aligned_cols=17 Identities=18% Similarity=0.323 Sum_probs=14.9
Q ss_pred hcCCHHHHHHHHHHHHh
Q 001481 446 TTGSADNARDILIDGIK 462 (1071)
Q Consensus 446 ~~g~~e~Ar~i~e~al~ 462 (1071)
..|++++|+.+|..||+
T Consensus 18 ~~g~y~eA~~lY~~ale 34 (75)
T cd02684 18 QRGDAAAALSLYCSALQ 34 (75)
T ss_pred HhccHHHHHHHHHHHHH
Confidence 78899999999999984
No 445
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=35.55 E-value=1.2e+02 Score=36.94 Aligned_cols=79 Identities=10% Similarity=0.013 Sum_probs=52.1
Q ss_pred HcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCC
Q 001481 405 RLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLLLEELIKFTMVHGGR 484 (1071)
Q Consensus 405 ~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~~~P~~~~lw~~~~~~e~~~g~~ 484 (1071)
+...++.++.+.+.-+-. ...+....+.-|.++. ..+.-+.|-++|++.+..+|+ ..+..|+.-+.+.|-.
T Consensus 20 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 90 (578)
T PRK15490 20 QEKKLAQAVALIDSELPT------EALTSLAMLKKAEFLH-DVNETERAYALYETLIAQNND--EARYEYARRLYNTGLA 90 (578)
T ss_pred HHhhHHHHHHHHHHhCCc------cchhHHHHHHHhhhhh-hhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhh
Confidence 334556665555543221 2223444555566665 788899999999999999998 5566788877788876
Q ss_pred CchhhHHHHHH
Q 001481 485 SHISIVDAVIS 495 (1071)
Q Consensus 485 ~~a~~~r~l~e 495 (1071)
.+++ .++.
T Consensus 91 ~~~~---~~~~ 98 (578)
T PRK15490 91 KDAQ---LILK 98 (578)
T ss_pred hHHH---HHHH
Confidence 6664 5555
No 446
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=35.14 E-value=1e+03 Score=30.11 Aligned_cols=89 Identities=7% Similarity=-0.125 Sum_probs=41.5
Q ss_pred hCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhh---cc-CCCcHHHHHHHHHHHHhh
Q 001481 371 IGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQ---RK-FHTLPLLYVQFSRLTYTT 446 (1071)
Q Consensus 371 ~g~~~~A~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~---~~-~p~~~~l~~~~A~~~~~~ 446 (1071)
.=.++.-..+|++|+..+.. ...+.....++-.++.-++.+..+|+---++-+.. .. .-.....++..|.+++ .
T Consensus 870 kf~Id~yl~~ye~ALghl~E-~~n~~~Ev~~yi~~hdly~~~l~lyrYd~e~Qk~~~nifa~~l~~n~~~~~aa~aye-~ 947 (1243)
T COG5290 870 KFSIDNYLSIYESALGHLNE-DLNVIREVMKYICRHDLYDFLLLLYRYDGELQKFKINIFAGNLVDNLYHISAAKAYE-V 947 (1243)
T ss_pred HhchhhhHHHHHHHHHhhHh-HHHHHHHHHHHHHhccchHHHHHHHHhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHH-H
Confidence 33456667777777744332 22334444444455555555555543211110000 00 0011223444455554 6
Q ss_pred cCCHHHHHHHHHHHH
Q 001481 447 TGSADNARDILIDGI 461 (1071)
Q Consensus 447 ~g~~e~Ar~i~e~al 461 (1071)
.|++.+|...|..|+
T Consensus 948 ~gK~~Ea~gay~sA~ 962 (1243)
T COG5290 948 EGKYIEAHGAYDSAL 962 (1243)
T ss_pred HHHHHHHHHHHHHHH
Confidence 667777777666665
No 447
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=35.01 E-value=6.6e+02 Score=29.29 Aligned_cols=129 Identities=9% Similarity=-0.063 Sum_probs=62.9
Q ss_pred HHHHHHHHHHhhccchHHHHHHHHHHHHhC--CHHHHHHHHHHHhhccChhhHHHHHHHHHHHHH---cCC-HHHHHHHH
Q 001481 343 SYALDRATQIFLKRLPVIHLFNARYKEQIG--DTSAARAAFPESYIDSDSRFIEKVTFKANMERR---LGN-FVAACDTY 416 (1071)
Q Consensus 343 ~~il~rAl~~~~~~~p~i~~~~a~~e~~~g--~~~~A~~~~~~al~~~~p~~~~~w~~~a~le~~---~g~-~~~A~~~y 416 (1071)
+.+..-|+.+ +|+.-.+|....+++.+.+ ++..-+.+.++++ ..+|.+...|.-.--+... .++ -.+-..+.
T Consensus 95 L~~~~~~L~~-npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L-~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ft 172 (421)
T KOG0529|consen 95 LKYVESALKV-NPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKAL-KQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFT 172 (421)
T ss_pred HHHHHHHHHh-CchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHH-hcCcccccchHHHHHHHHHHhcccccchhHHHHH
Confidence 3344444444 2222234444445555433 3455666666666 4566555555432221111 111 22334455
Q ss_pred HHHHHHHhhhccCCCcHHHHHHHHHHHHhh-----cCC------HHHHHHHHHHHHhhCCChHHHHHHHHHHHH
Q 001481 417 KEALETAAEQRKFHTLPLLYVQFSRLTYTT-----TGS------ADNARDILIDGIKHVPNCKLLLEELIKFTM 479 (1071)
Q Consensus 417 ~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~-----~g~------~e~Ar~i~e~al~~~P~~~~lw~~~~~~e~ 479 (1071)
.++|.. .+.+..+|.....++... .|. +..-...-..|+-.+|++...|..+.-++.
T Consensus 173 t~~I~~------nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY~rWLl~ 240 (421)
T KOG0529|consen 173 TKLIND------NFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFYHRWLLG 240 (421)
T ss_pred HHHHhc------cchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeeehHHhhc
Confidence 555554 455666666555554322 121 112233345556678999999987666553
No 448
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=34.77 E-value=2.6e+02 Score=32.65 Aligned_cols=46 Identities=13% Similarity=0.022 Sum_probs=30.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHH
Q 001481 396 VTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSR 441 (1071)
Q Consensus 396 w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~ 441 (1071)
++.-+.+....|.-++|.++++.|...+..-......+.+.+.||.
T Consensus 270 ~LLQGV~~yHqg~~deAye~le~a~~~l~elki~d~~lsllv~mGf 315 (568)
T KOG2561|consen 270 ELLQGVVAYHQGQRDEAYEALESAHAKLLELKINDETLSLLVGMGF 315 (568)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHeeccchHHHHHHHcCC
Confidence 3334445556789999999999999887654443344455555543
No 449
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=34.56 E-value=1.2e+02 Score=31.54 Aligned_cols=50 Identities=18% Similarity=0.088 Sum_probs=35.8
Q ss_pred cHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcC
Q 001481 54 DIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSAT 104 (1071)
Q Consensus 54 ~~~~a~~vyeraL~~~P~s~~lW~~~a~~e~~~~~~e~A~~lferAL~~~P 104 (1071)
..+..+...++.++..| ++.....++......|+.++|+.+++++....|
T Consensus 126 ~l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 126 MLEAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 44555566777777777 455677777777777777777777777777777
No 450
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=34.33 E-value=6.5e+02 Score=27.52 Aligned_cols=68 Identities=16% Similarity=0.050 Sum_probs=44.2
Q ss_pred cchHHHHHHHHHHHHhCCHHHHHHHHHHHhh---------------ccChhhHHHHHHHHHH-HHHcCCHHHHHHHHHHH
Q 001481 356 RLPVIHLFNARYKEQIGDTSAARAAFPESYI---------------DSDSRFIEKVTFKANM-ERRLGNFVAACDTYKEA 419 (1071)
Q Consensus 356 ~~p~i~~~~a~~e~~~g~~~~A~~~~~~al~---------------~~~p~~~~~w~~~a~l-e~~~g~~~~A~~~y~~A 419 (1071)
..|.+|...|..+.+.+++.+|+..|-.+-. ...+....+++..+.+ +--.|++..|..++..-
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f 167 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRDANELFDTF 167 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 4578999999998889999998877754421 1123344555555554 33469999999988888
Q ss_pred HHHH
Q 001481 420 LETA 423 (1071)
Q Consensus 420 l~~~ 423 (1071)
++.+
T Consensus 168 ~~~~ 171 (260)
T PF04190_consen 168 TSKL 171 (260)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7763
No 451
>PF13041 PPR_2: PPR repeat family
Probab=34.32 E-value=1.8e+02 Score=22.50 Aligned_cols=30 Identities=17% Similarity=0.139 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001481 393 IEKVTFKANMERRLGNFVAACDTYKEALET 422 (1071)
Q Consensus 393 ~~~w~~~a~le~~~g~~~~A~~~y~~Al~~ 422 (1071)
.-.|...+..+.+.|++++|.++|++..+.
T Consensus 3 ~~~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 3 VVTYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred hHHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 345777888888889999999999888765
No 452
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=34.30 E-value=1.2e+03 Score=30.41 Aligned_cols=69 Identities=14% Similarity=0.063 Sum_probs=48.9
Q ss_pred CHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCC--hHHHHHHHHHHHHHcC
Q 001481 408 NFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPN--CKLLLEELIKFTMVHG 482 (1071)
Q Consensus 408 ~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~~~P~--~~~lw~~~~~~e~~~g 482 (1071)
.+|.-.+.|.+.++.+ +..+.++|......+. ..|.+-.|.+++.++++.... ..+.|...+++...+|
T Consensus 1211 ~ld~~~e~y~el~kw~-----d~~dsK~~~~a~~ha~-~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lg 1281 (1304)
T KOG1114|consen 1211 KLDSYNENYQELLKWL-----DASDSKVWQIAKKHAK-ALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLG 1281 (1304)
T ss_pred hhhhHHHHHHHHHHHh-----hcCCchheehhHHHHH-HHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhC
Confidence 3566677787777765 3344555544333333 889999999999999997665 4568888888887776
No 453
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=34.28 E-value=6.6e+02 Score=27.86 Aligned_cols=180 Identities=15% Similarity=0.036 Sum_probs=0.0
Q ss_pred HHHHHHhCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCHH---------HHHHHHHHHHHHhhccchHHHHHHHH
Q 001481 296 LSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGRE---------IASYALDRATQIFLKRLPVIHLFNAR 366 (1071)
Q Consensus 296 ~~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e---------~A~~il~rAl~~~~~~~p~i~~~~a~ 366 (1071)
+.-+...+++++....|++.....-...+-...|.......+.++ ....+++.=+.. .|+..-.|+..+.
T Consensus 7 ir~LL~~~~f~eLd~~l~~~~~~~~~s~~~e~~Y~~~~~~~~l~D~~~~~~~~~~~~~~LkaWv~a-~P~Sy~A~La~g~ 85 (277)
T PF13226_consen 7 IRELLQARDFAELDALLARLLQAWLQSRDGEQRYFRAWMSSTLFDMDSVVDAWQARLAVLKAWVAA-CPKSYHAHLAMGM 85 (277)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhhhhccCccchHHHHHhhccccCcchhhhHHHhHHHHHHHHHHH-CCCChHHHHHHHH
Q ss_pred HH----------------------HHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q 001481 367 YK----------------------EQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAA 424 (1071)
Q Consensus 367 ~e----------------------~~~g~~~~A~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~ 424 (1071)
+. ....-.+.|...+.+|+ +++|..+.++...+++-...|..+-...+|.-......
T Consensus 86 ~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~-~l~pr~~~A~~~m~~~s~~fgeP~WL~~l~~g~~~~~~ 164 (277)
T PF13226_consen 86 YWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAI-ELSPRPVAAAIGMINISAYFGEPDWLAALFAGQPAESR 164 (277)
T ss_pred HHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHH-hcCCCchHHHHHHHHHHhhcCCchHHHHHHCCCCCCcc
Q ss_pred hhccCCCcHHHHHHHHHHHHhhcC---------------------CHHHHHHH-HHHHHhhCCChHHHHHHHHHHH
Q 001481 425 EQRKFHTLPLLYVQFSRLTYTTTG---------------------SADNARDI-LIDGIKHVPNCKLLLEELIKFT 478 (1071)
Q Consensus 425 ~~~~~p~~~~l~~~~A~~~~~~~g---------------------~~e~Ar~i-~e~al~~~P~~~~lw~~~~~~e 478 (1071)
+.......+.+|-..+.++. ..| +.++++.+ +..+|...|.+......|+.|+
T Consensus 165 ~~~~~~~~~~~~~~~~~~l~-~~g~~~~~~~p~~lP~~L~~~~~~~~~~~~~YWl~~~l~~~p~~~~~~~~y~~yl 239 (277)
T PF13226_consen 165 PLAHAEYDPEVWQAAAALLA-RYGLNPLAELPQALPASLPARTEDELEDPLDYWLRHALAIRPGDFEALEAYIYYL 239 (277)
T ss_pred hHHHhhcchhhHHHHHHHHH-HcCCCccccCcccCcccccchhhhhccchHHHHHHHHHHhCcchHHHHHHHHHHh
No 454
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.19 E-value=7.7e+02 Score=30.44 Aligned_cols=73 Identities=11% Similarity=0.094 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCChHH
Q 001481 395 KVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKL 469 (1071)
Q Consensus 395 ~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~~~P~~~~ 469 (1071)
+|...+.. .+..++..+...|+..+..+..+.......++.-.++-+|. .+..+|+|.++|+.|=+.+|.++.
T Consensus 357 LWn~A~~~-F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL-~L~QLD~A~E~~~EAE~~d~~~~l 429 (872)
T KOG4814|consen 357 LWNTAKKL-FKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYL-KLEQLDNAVEVYQEAEEVDRQSPL 429 (872)
T ss_pred HHHhhHHH-HHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHhhccccHH
Confidence 36555543 34567888888888888776544444445677777777776 788888888888888888877653
No 455
>PF14929 TAF1_subA: TAF RNA Polymerase I subunit A
Probab=33.99 E-value=9.7e+02 Score=29.39 Aligned_cols=167 Identities=8% Similarity=0.014 Sum_probs=94.7
Q ss_pred HHHHHHHHHhhcCCCCCH-----HHHHHHHHHHHhh------------CCHHHHHHHHHHHHHHhhccchHHHHHHHHHH
Q 001481 306 DWVVKLYERCLIPCADYP-----EFWMRYVDFMESK------------GGREIASYALDRATQIFLKRLPVIHLFNARYK 368 (1071)
Q Consensus 306 ~~a~~~yerAL~~~p~~~-----~lW~~ya~~l~~~------------g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e 368 (1071)
+.+..++...-...+..+ ++|....+|+... |+.++|+..+++.+.. ..+.......|.++
T Consensus 275 ee~~~~~s~~~ek~~s~p~~~~fn~yk~a~KYLR~al~s~p~vlLl~~~~l~eal~~~e~~c~~--~~~~lpi~~~~~ll 352 (547)
T PF14929_consen 275 EEYRESLSNYAEKFPSNPGRSIFNAYKYAVKYLRLALQSNPPVLLLIGGRLKEALNELEKFCIS--STCALPIRLRAHLL 352 (547)
T ss_pred HHHHHHHhhccccccCccccchhHHHHHHHHHHHHHhcCCCCeEEeccccHHHHHHHHHHhccC--CCccchHHHHHHHH
Confidence 344444422224444444 7888888877432 6678888877775532 11111222345566
Q ss_pred HHhC--CHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhh
Q 001481 369 EQIG--DTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTT 446 (1071)
Q Consensus 369 ~~~g--~~~~A~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~ 446 (1071)
+..+ ..+.-..+|+.++ .++|......-..+.+... ...+..+++ ++++... .. ....+|..|+.++...
T Consensus 353 e~~d~~~~~~l~~~~e~~~-~~~P~~~~~le~l~~~~~~---~~~~~~Lle-~i~~~l~--~~-~s~~iwle~~~~~l~~ 424 (547)
T PF14929_consen 353 EYFDQNNSSVLSSCLEDCL-KKDPTMSYSLERLILLHQK---DYSAEQLLE-MIALHLD--LV-PSHPIWLEFVSCFLKN 424 (547)
T ss_pred HHhCcccHHHHHHHHHHHh-cCCCcHHHHHHHHHhhhhh---HHHHHHHHH-HHHHHhh--cC-CCchHHHHHHHHHHhc
Confidence 6655 5667778888888 6788766544444433322 455566666 4433211 12 4678999999998744
Q ss_pred cCCHHHHHHHHHHHHh-------h--CCChHHHHHHHHHHHHHcC
Q 001481 447 TGSADNARDILIDGIK-------H--VPNCKLLLEELIKFTMVHG 482 (1071)
Q Consensus 447 ~g~~e~Ar~i~e~al~-------~--~P~~~~lw~~~~~~e~~~g 482 (1071)
.++++.-.+-...+++ . +..+...|..+.+...+..
T Consensus 425 ~~~~~~~~e~~~~~l~vlf~~LDf~~~r~n~~aW~~l~~~l~~i~ 469 (547)
T PF14929_consen 425 PSRFEDKEEDHKSALKVLFEFLDFAGWRKNIQAWKLLAKKLPKIF 469 (547)
T ss_pred cccccccHHHHHHHHhcchhcccccccccccHHHHHHHHHhhHhh
Confidence 5666544555555542 1 2235567877766655433
No 456
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=33.81 E-value=2.2e+02 Score=23.97 Aligned_cols=17 Identities=18% Similarity=0.358 Sum_probs=11.4
Q ss_pred HHhCCHHHHHHHHHHHh
Q 001481 369 EQIGDTSAARAAFPESY 385 (1071)
Q Consensus 369 ~~~g~~~~A~~~~~~al 385 (1071)
...|++++|..+|..++
T Consensus 16 D~~g~~~~A~~~Y~~ai 32 (69)
T PF04212_consen 16 DEAGNYEEALELYKEAI 32 (69)
T ss_dssp HHTTSHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 44667777777777666
No 457
>PRK15338 type III secretion system regulator InvE; Provisional
Probab=33.60 E-value=4.6e+02 Score=30.19 Aligned_cols=26 Identities=8% Similarity=-0.040 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHhhCCChHHHHHHHHH
Q 001481 451 DNARDILIDGIKHVPNCKLLLEELIK 476 (1071)
Q Consensus 451 e~Ar~i~e~al~~~P~~~~lw~~~~~ 476 (1071)
..=|.+|...|..+..-..+|..|+.
T Consensus 184 ~~LR~lYR~Fl~~d~~~~~iY~~Wie 209 (372)
T PRK15338 184 GLLRASYRQFLQSESHEVEIYSDWIA 209 (372)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHH
Confidence 45566666666666666666666654
No 458
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=33.28 E-value=1.4e+03 Score=31.09 Aligned_cols=91 Identities=9% Similarity=-0.037 Sum_probs=54.9
Q ss_pred CCHHHHHHHHHHHhh---ccChh--hHHHHHHHHHHHHHcC--------------------CHHHHHHHHHHHHHHHhhh
Q 001481 372 GDTSAARAAFPESYI---DSDSR--FIEKVTFKANMERRLG--------------------NFVAACDTYKEALETAAEQ 426 (1071)
Q Consensus 372 g~~~~A~~~~~~al~---~~~p~--~~~~w~~~a~le~~~g--------------------~~~~A~~~y~~Al~~~~~~ 426 (1071)
..+++|+.+|.++.. +..|. +.++.++++++..... .-.++.....+|+..-...
T Consensus 359 ~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~~~~~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~~ 438 (1185)
T PF08626_consen 359 DLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLVAQHLSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLKD 438 (1185)
T ss_pred HHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHHHhhcccchhhhhccccccccCCCCHHHHHHHHHHhhhhhhhh
Confidence 346788999998862 22232 3566778888776655 4455555556665542111
Q ss_pred ccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhh
Q 001481 427 RKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKH 463 (1071)
Q Consensus 427 ~~~p~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~~ 463 (1071)
-.....-.+|..+|.+|. ..|-.-++-=+.+.++..
T Consensus 439 l~~~dqi~i~~~lA~vy~-~lG~~RK~AFvlR~l~~~ 474 (1185)
T PF08626_consen 439 LSVEDQIRIYSGLASVYG-SLGFHRKKAFVLRELAVQ 474 (1185)
T ss_pred CCHHHHHHHHHHHHHHHH-hcchhHHHHHHHHHHHHH
Confidence 111223468889999987 888766665555555554
No 459
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=33.16 E-value=71 Score=27.78 Aligned_cols=19 Identities=16% Similarity=0.356 Sum_probs=11.8
Q ss_pred HhCCHHHHHHHHHHHHHhc
Q 001481 85 RLCSIDKVVEVFERAVQSA 103 (1071)
Q Consensus 85 ~~~~~e~A~~lferAL~~~ 103 (1071)
..|++++|..+|..||+.|
T Consensus 18 ~~gny~eA~~lY~~ale~~ 36 (75)
T cd02680 18 EKGNAEEAIELYTEAVELC 36 (75)
T ss_pred HhhhHHHHHHHHHHHHHHH
Confidence 4456666666666666653
No 460
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=32.74 E-value=4.1e+02 Score=31.01 Aligned_cols=93 Identities=15% Similarity=0.100 Sum_probs=57.9
Q ss_pred HHHHHHHHHHH----HHHhCCHHHHHHHHHHhhcCC-----------CCCH-------HHHHHHHHHHHhhCCHHHHHHH
Q 001481 288 QLKNWHDYLSF----AEKQGDFDWVVKLYERCLIPC-----------ADYP-------EFWMRYVDFMESKGGREIASYA 345 (1071)
Q Consensus 288 ~~~~W~~y~~~----~~~~g~~~~a~~~yerAL~~~-----------p~~~-------~lW~~ya~~l~~~g~~e~A~~i 345 (1071)
.++-|...+.- .-+.+++..|..-|..||..| +... -+--.++.+|.+.++.+.|++.
T Consensus 171 qiDkwl~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh 250 (569)
T PF15015_consen 171 QIDKWLQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNH 250 (569)
T ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHH
Confidence 44556554322 224566666666666666543 2222 2334567778888999999998
Q ss_pred HHHHHHHhhccchHHHHHHHHHHHHhCCHHHHHHHH
Q 001481 346 LDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAF 381 (1071)
Q Consensus 346 l~rAl~~~~~~~p~i~~~~a~~e~~~g~~~~A~~~~ 381 (1071)
.-|.+.. .|..+.-++.-|.+...+.+|.+|-.-+
T Consensus 251 ~hrsI~l-nP~~frnHLrqAavfR~LeRy~eAarSa 285 (569)
T PF15015_consen 251 SHRSINL-NPSYFRNHLRQAAVFRRLERYSEAARSA 285 (569)
T ss_pred Hhhhhhc-CcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888875 6666666666666666677776655443
No 461
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=32.54 E-value=97 Score=26.14 Aligned_cols=17 Identities=18% Similarity=0.421 Sum_probs=14.5
Q ss_pred hcCCHHHHHHHHHHHHh
Q 001481 446 TTGSADNARDILIDGIK 462 (1071)
Q Consensus 446 ~~g~~e~Ar~i~e~al~ 462 (1071)
..|++++|+..|..|+.
T Consensus 17 ~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 17 EAGNYEEALELYKEAIE 33 (69)
T ss_dssp HTTSHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 68899999999988873
No 462
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=32.27 E-value=68 Score=23.88 Aligned_cols=29 Identities=7% Similarity=0.103 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHhh
Q 001481 434 LLYVQFSRLTYTTTGSADNARDILIDGIKH 463 (1071)
Q Consensus 434 ~l~~~~A~~~~~~~g~~e~Ar~i~e~al~~ 463 (1071)
.+|..+|.+-. ..++++.|..=|+++|++
T Consensus 2 dv~~~Lgeisl-e~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISL-ENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHH-HhccHHHHHHHHHHHHHH
Confidence 46788888877 899999999999999865
No 463
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=31.60 E-value=86 Score=21.42 Aligned_cols=27 Identities=11% Similarity=0.374 Sum_probs=17.9
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 001481 76 WRKYADHKARLCSIDKVVEVFERAVQS 102 (1071)
Q Consensus 76 W~~~a~~e~~~~~~e~A~~lferAL~~ 102 (1071)
|..++..+.+.+++++|.++|.+....
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~~ 29 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLER 29 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 556666666777777777777766543
No 464
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=31.29 E-value=85 Score=21.47 Aligned_cols=27 Identities=22% Similarity=0.193 Sum_probs=21.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001481 396 VTFKANMERRLGNFVAACDTYKEALET 422 (1071)
Q Consensus 396 w~~~a~le~~~g~~~~A~~~y~~Al~~ 422 (1071)
|...+..+.+.|++++|.++|.+..+.
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~~ 29 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLER 29 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 566677778889999999999887653
No 465
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=30.82 E-value=6.2e+02 Score=26.20 Aligned_cols=96 Identities=17% Similarity=0.172 Sum_probs=58.3
Q ss_pred CChhHHHHHHHHHHHHHHhCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhh-----CCHHHHHHHHHHHHHHhhccch
Q 001481 284 LDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESK-----GGREIASYALDRATQIFLKRLP 358 (1071)
Q Consensus 284 ~~p~~~~~W~~y~~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~-----g~~e~A~~il~rAl~~~~~~~p 358 (1071)
..|+...+.-.|++-. ..+|+.|..+|..--..+ .+++--+.|+.++..- +++..|...|..|... +.|
T Consensus 32 K~Pe~C~lLgdYlEgi--~knF~~A~kv~K~nCden-~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~---n~~ 105 (248)
T KOG4014|consen 32 KRPESCQLLGDYLEGI--QKNFQAAVKVFKKNCDEN-SYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDA---NIP 105 (248)
T ss_pred CCchHHHHHHHHHHHH--HHHHHHHHHHHHhccccc-CCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhcc---CCH
Confidence 3455555554444433 457889999998766543 3456667787765432 2467888888888874 344
Q ss_pred HHHHHHHHHHH-----HhC--CHHHHHHHHHHHh
Q 001481 359 VIHLFNARYKE-----QIG--DTSAARAAFPESY 385 (1071)
Q Consensus 359 ~i~~~~a~~e~-----~~g--~~~~A~~~~~~al 385 (1071)
..-...+.+.. +.+ +..+|++.+.++.
T Consensus 106 ~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traC 139 (248)
T KOG4014|consen 106 QACRYLGLLHWNGEKDRKADPDSEKAERYMTRAC 139 (248)
T ss_pred HHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhc
Confidence 32222222221 222 3678999999987
No 466
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=30.69 E-value=8.5e+02 Score=27.73 Aligned_cols=61 Identities=11% Similarity=0.168 Sum_probs=45.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Q 001481 401 NMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIK 462 (1071)
Q Consensus 401 ~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~ 462 (1071)
.+.++.++.++|.+.+++.++.+...........+....|+++. ..||.++++++++.+-+
T Consensus 83 ~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L-~i~DLk~~kk~ldd~~~ 143 (380)
T KOG2908|consen 83 VVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKL-EINDLKEIKKLLDDLKS 143 (380)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHH-hcccHHHHHHHHHHHHH
Confidence 34566779999999999999887544332233445566777777 89999999999887755
No 467
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.55 E-value=1e+03 Score=28.73 Aligned_cols=70 Identities=19% Similarity=0.322 Sum_probs=52.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhc-cCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCC
Q 001481 396 VTFKANMERRLGNFVAACDTYKEALETAAEQR-KFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVP 465 (1071)
Q Consensus 396 w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~-~~p~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~~~P 465 (1071)
++..+.+.+.+|+-..|..+|..+++...... .....|-+++.+|.+++...|.+.+|++.+.+|-....
T Consensus 452 ~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~ 522 (546)
T KOG3783|consen 452 YLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYAS 522 (546)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcc
Confidence 45557788999999999999999986532222 23346788999999999344449999999999975543
No 468
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=30.51 E-value=9.5e+02 Score=28.25 Aligned_cols=33 Identities=6% Similarity=0.153 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 001481 515 DISSLYLQQFLDLCGTIHDIRNAWNQHIKLFPH 547 (1071)
Q Consensus 515 ~lw~~~l~~~e~~~G~~e~a~~~~~ra~~~~p~ 547 (1071)
.+|......--..+|....|..+|.+++.....
T Consensus 370 af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~~ 402 (414)
T PF12739_consen 370 AFHMVLAGHRYSKAGQKKHALRCYKQALQVYEG 402 (414)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCC
Confidence 456655534446899999999999999999864
No 469
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.40 E-value=1.3e+03 Score=30.46 Aligned_cols=24 Identities=17% Similarity=0.145 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHH
Q 001481 513 VEDISSLYLQQFLDLCGTIHDIRNA 537 (1071)
Q Consensus 513 ~~~lw~~~l~~~e~~~G~~e~a~~~ 537 (1071)
-..+...|+ ++....|.+..|+..
T Consensus 664 l~~~~~~ya-nllasQG~~~~A~~~ 687 (1049)
T KOG0307|consen 664 LAKKFSEYA-NLLASQGALAAAMSF 687 (1049)
T ss_pred HHHHHHHHH-HHHHhcChHHHHHhh
Confidence 345566666 666667776666554
No 470
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=30.39 E-value=8.4e+02 Score=28.38 Aligned_cols=118 Identities=16% Similarity=0.087 Sum_probs=64.9
Q ss_pred HHhCCHHHHHHHHHHhhcCCC-----CCHHHHHHHHH--HHHhhCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhC
Q 001481 300 EKQGDFDWVVKLYERCLIPCA-----DYPEFWMRYVD--FMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIG 372 (1071)
Q Consensus 300 ~~~g~~~~a~~~yerAL~~~p-----~~~~lW~~ya~--~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g 372 (1071)
...+++..|..+|+.++.... ....+|..++. .+|..-++++|.+.+++.+ .+..+..++.+.....
T Consensus 141 ~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~~~------~~~~~~~~~~~~~~~~ 214 (380)
T TIGR02710 141 INAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLNDPL------PERLALYQVTSHDELE 214 (380)
T ss_pred HHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhhcc------chhhhhhhhhhhhHHH
Confidence 457889999999999886532 22344444433 4567777899999998521 1223333333332211
Q ss_pred CHHHHHHHHHH---------HhhccChhhHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHHH
Q 001481 373 DTSAARAAFPE---------SYIDSDSRFIEKVTFKANMER--RLGNFVAACDTYKEALETA 423 (1071)
Q Consensus 373 ~~~~A~~~~~~---------al~~~~p~~~~~w~~~a~le~--~~g~~~~A~~~y~~Al~~~ 423 (1071)
.+......+.. ..+...|...-+.-.+.+.++ ..|.++.|..-+-++++++
T Consensus 215 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~na~rr~~~~ry~da~~r~yR~~e~~ 276 (380)
T TIGR02710 215 DVIKRNASILPEIIGSRNGRREAKRRPFLPLLGDLLANAERRATQGRYDDAAARLYRALELI 276 (380)
T ss_pred HHHHhHHhhcchhhhccchhhhhcccchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 11111111111 111122333333344455555 4699999999999999884
No 471
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=30.08 E-value=3.2e+02 Score=28.23 Aligned_cols=48 Identities=19% Similarity=0.223 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCC
Q 001481 410 VAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVP 465 (1071)
Q Consensus 410 ~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~~~P 465 (1071)
+..++..++.++. .-++.+|..++.++. ..|+.++|+.+..++...+|
T Consensus 128 ~~~~~~a~~~l~~-------~P~~~~~~~~a~~l~-~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 128 EAYIEWAERLLRR-------RPDPNVYQRYALALA-LLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHHHh-------CCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCC
Confidence 3344444555544 346889999999988 99999999999999999999
No 472
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=30.03 E-value=1.5e+02 Score=25.84 Aligned_cols=17 Identities=24% Similarity=0.315 Sum_probs=11.3
Q ss_pred HHhCCHHHHHHHHHHHh
Q 001481 369 EQIGDTSAARAAFPESY 385 (1071)
Q Consensus 369 ~~~g~~~~A~~~~~~al 385 (1071)
...|++++|..+|..+|
T Consensus 17 D~~g~y~eAl~~Y~~ai 33 (77)
T cd02683 17 DQEGRFQEALVCYQEGI 33 (77)
T ss_pred HHhccHHHHHHHHHHHH
Confidence 45666777777776666
No 473
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=29.82 E-value=3.7e+02 Score=23.32 Aligned_cols=17 Identities=29% Similarity=0.296 Sum_probs=11.5
Q ss_pred HHhCCHHHHHHHHHHHh
Q 001481 369 EQIGDTSAARAAFPESY 385 (1071)
Q Consensus 369 ~~~g~~~~A~~~~~~al 385 (1071)
...|++++|..+|..++
T Consensus 17 d~~~~y~eA~~~Y~~~i 33 (75)
T cd02677 17 EEEGDYEAAFEFYRAGV 33 (75)
T ss_pred HHHhhHHHHHHHHHHHH
Confidence 34567777777777776
No 474
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.70 E-value=1.4e+02 Score=37.56 Aligned_cols=41 Identities=22% Similarity=0.310 Sum_probs=21.5
Q ss_pred CCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Q 001481 407 GNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIK 462 (1071)
Q Consensus 407 g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~ 462 (1071)
|+.++-+++++.+ ...+.+|+.. ...|.-++|-++.+..-+
T Consensus 741 ~dv~ervkIl~n~----------g~~~laylta-----~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 741 GDVKERVKILENG----------GQLPLAYLTA-----AAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred ccHHHHHHHHHhc----------CcccHHHHHH-----hhcCcHHHHHHHHHhhcc
Confidence 5555555555543 2234444433 146666666666666554
No 475
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=28.66 E-value=1e+02 Score=33.74 Aligned_cols=62 Identities=11% Similarity=0.075 Sum_probs=45.6
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHH
Q 001481 308 VVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQ 370 (1071)
Q Consensus 308 a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~ 370 (1071)
|+..|.+|+...|..+..|..+|.+....|+.=.|...|-|++-...|. +.....+..+..+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf-~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPF-PSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB---HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHH
Confidence 5789999999999999999999999999999989999999998652232 3444444444333
No 476
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=28.59 E-value=2.4e+02 Score=24.63 Aligned_cols=64 Identities=13% Similarity=0.179 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhccchHHHHHHHHHHHHhCCHHHHHHHHHHHhhccChhhHHH---HHHHHHHHHHcCCHHHHHHHH
Q 001481 340 EIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEK---VTFKANMERRLGNFVAACDTY 416 (1071)
Q Consensus 340 e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~~A~~~~~~al~~~~p~~~~~---w~~~a~le~~~g~~~~A~~~y 416 (1071)
+.|..++.+|++. ...|++.+|..+|..++ +..-...+. --....+..+...+-.=.+.+
T Consensus 4 ~~A~~~a~~AVe~----------------D~~gr~~eAi~~Y~~aI-e~L~q~~~~~pD~~~k~~yr~ki~eY~~Rae~L 66 (75)
T cd02682 4 EMARKYAINAVKA----------------EKEGNAEDAITNYKKAI-EVLSQIVKNYPDSPTRLIYEQMINEYKRRIEVL 66 (75)
T ss_pred HHHHHHHHHHHHH----------------HhcCCHHHHHHHHHHHH-HHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHH
Q 001481 417 KEAL 420 (1071)
Q Consensus 417 ~~Al 420 (1071)
++.+
T Consensus 67 k~~v 70 (75)
T cd02682 67 EKQN 70 (75)
T ss_pred HHHc
No 477
>TIGR01987 HI0074 nucleotidyltransferase substrate binding protein, HI0074 family. The member of this family from Haemophilus influenzae, HI0074, has been shown by crystal structure to resemble nucleotidyltransferase substrate binding proteins. It forms a complex with HI0073, encoded by the adjacent gene and containing a nucleotidyltransferase nucleotide binding domain (pfam01909).
Probab=28.57 E-value=3.4e+02 Score=26.09 Aligned_cols=43 Identities=14% Similarity=0.251 Sum_probs=21.3
Q ss_pred HHHHHHHHHhc-CCCHHHHHHHHHHHHhhCC--ChhHHHHHHHHHH
Q 001481 93 VEVFERAVQSA-TYSVDVWFHYCSLSMSTFE--DPNDVRRLFKRAL 135 (1071)
Q Consensus 93 ~~lferAL~~~-P~s~~lW~~y~~~~~~~~~--~~e~ar~l~erAL 135 (1071)
+.++..|.+.- -.+.++|+.++..-..... +.+.|.++|++..
T Consensus 63 r~~ir~A~~~glI~d~~~W~~ml~~RN~tsHtYde~~a~~i~~~I~ 108 (123)
T TIGR01987 63 KDVLKEAFRAGLIGDESLWIAMLDDRNITSHTYDQEKAREIYAQIR 108 (123)
T ss_pred HHHHHHHHHcCCcCCHHHHHHHHHHhCcccccCCHHHHHHHHHHHH
Confidence 55555555442 1356777776655322211 2234566666554
No 478
>TIGR02029 AcsF magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase. This model respresents the oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under aerobic conditions. This enzyme is believed to utilize a binuclear iron center and molecular oxygen. There are two isoforms of this enzyme in some plants and cyanobacterai which are differentially regulated based on the levels of copper and oxygen. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under aerobic conditions (a separate enzyme, BchE, acts under anaerobic conditions). This enzyme is found in plants, cyanobacteria and other photosynthetic bacteria.
Probab=27.86 E-value=5.4e+02 Score=28.77 Aligned_cols=68 Identities=12% Similarity=0.211 Sum_probs=50.5
Q ss_pred hHHHH--HHHHHHHhcCCCCC------------chHHHHHHHHHHHHccCHHHHHHHHHHHhccCCccHHHHHHHHHHHH
Q 001481 125 NDVRR--LFKRALSFVGKDYL------------CHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLA 190 (1071)
Q Consensus 125 e~ar~--l~erAL~~~~~~~~------------s~~lW~~yi~fe~~~~~~~~a~~iy~ral~~p~~~l~~~~~~~~~~~ 190 (1071)
++||. .+++|+...|.... -..=|+.|+.++.++-.+-..+.||+..-+.|...+.-++.-|+.|.
T Consensus 116 DEARHAGFlNkam~df~l~lDLgfLtk~r~YTfF~PkfI~YAtYLSEKIGYwRYItIyRHLe~~Pe~r~~PIF~~Fe~WC 195 (337)
T TIGR02029 116 DEARHAGFLNKALGDFGLALDLGFLTKTRKYTFFRPKFIYYATYLSEKIGYWRYITIYRHLEENPENQFYPIFKYFESWC 195 (337)
T ss_pred hhHHHhhhHHHHHHHcCcccchhhhccCCceeeeccceeehhhHhHhhhhhHHHHHHHHHHHhCcccccchHHHHHHHHh
Confidence 34554 47777776544211 12457888888887777788889999988999999999999999998
Q ss_pred Hh
Q 001481 191 GA 192 (1071)
Q Consensus 191 ~~ 192 (1071)
++
T Consensus 196 qD 197 (337)
T TIGR02029 196 QD 197 (337)
T ss_pred cc
Confidence 76
No 479
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=27.86 E-value=4.2e+02 Score=28.48 Aligned_cols=24 Identities=13% Similarity=-0.097 Sum_probs=20.1
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHHH
Q 001481 329 YVDFMESKGGREIASYALDRATQI 352 (1071)
Q Consensus 329 ya~~l~~~g~~e~A~~il~rAl~~ 352 (1071)
...|+...|+++.|.++.+.|++.
T Consensus 89 ~mvW~~D~Gd~~~AL~ia~yAI~~ 112 (230)
T PHA02537 89 VMVWRFDIGDFDGALEIAEYALEH 112 (230)
T ss_pred eeeeeeeccCHHHHHHHHHHHHHc
Confidence 344677899999999999999985
No 480
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=27.81 E-value=2.1e+02 Score=31.26 Aligned_cols=43 Identities=19% Similarity=-0.023 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhhccchHHHHHHHHHHHHhCCHHHHHHHHHHHh
Q 001481 342 ASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESY 385 (1071)
Q Consensus 342 A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~~A~~~~~~al 385 (1071)
|+..|.+|+.+ .|..-..|...|.+....|+.-.|.-.|-|++
T Consensus 1 A~~~Y~~A~~l-~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl 43 (278)
T PF10373_consen 1 AERYYRKAIRL-LPSNGNPYNQLAVLASYQGDDLDAVYYYIRSL 43 (278)
T ss_dssp HHHHHHHHHHH--TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHh-CCCCCCcccchhhhhccccchHHHHHHHHHHH
Confidence 56667777765 55555666666766666666666666666666
No 481
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=27.79 E-value=7.8e+02 Score=26.35 Aligned_cols=130 Identities=16% Similarity=0.040 Sum_probs=0.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCC---hHHHHHHHHH
Q 001481 400 ANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPN---CKLLLEELIK 476 (1071)
Q Consensus 400 a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~~~P~---~~~lw~~~~~ 476 (1071)
+.-+.+.+.+.+++...+.-++. .|++......+-.++. ..|++++|..-++-+-...|. -..+|...+.
T Consensus 8 ~seLL~~~sL~dai~~a~~qVka------kPtda~~RhflfqLlc-vaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKA------KPTDAGGRHFLFQLLC-VAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhc------CCccccchhHHHHHHh-hcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Q ss_pred HHHHcCCCCchhhHHHHHHHhhccCCcccccCChhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcc
Q 001481 477 FTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQQFLDLCGTIHDIRNAWNQHIKLFPHTVR 550 (1071)
Q Consensus 477 ~e~~~g~~~~a~~~r~l~e~Al~~~~d~~~~l~~~~~~~lw~~~l~~~e~~~G~~e~a~~~~~ra~~~~p~~~~ 550 (1071)
.|.... ++|.-.. .|+..+.-++++...|-.... ...-|.-+.+.++-+.+++.-|....
T Consensus 81 ~ea~R~---------evfag~~--~Pgflg~p~p~wva~L~aala---~h~dg~gea~~alreqal~aa~~~iG 140 (273)
T COG4455 81 CEAARN---------EVFAGGA--VPGFLGGPSPEWVAALLAALA---LHSDGAGEARTALREQALKAAPVPIG 140 (273)
T ss_pred HHHHHH---------HHhccCC--CCCCcCCCCHHHHHHHHHHHh---cccCCcchHHHHHHHHHHhhCCCCCc
No 482
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=27.53 E-value=2e+02 Score=24.89 Aligned_cols=17 Identities=29% Similarity=0.428 Sum_probs=10.8
Q ss_pred HHhCCHHHHHHHHHHHh
Q 001481 369 EQIGDTSAARAAFPESY 385 (1071)
Q Consensus 369 ~~~g~~~~A~~~~~~al 385 (1071)
...|++++|..+|..++
T Consensus 17 D~~g~y~eA~~lY~~al 33 (75)
T cd02684 17 DQRGDAAAALSLYCSAL 33 (75)
T ss_pred HHhccHHHHHHHHHHHH
Confidence 34566666666666666
No 483
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=27.39 E-value=95 Score=27.12 Aligned_cols=17 Identities=24% Similarity=0.274 Sum_probs=13.9
Q ss_pred hcCCHHHHHHHHHHHHh
Q 001481 446 TTGSADNARDILIDGIK 462 (1071)
Q Consensus 446 ~~g~~e~Ar~i~e~al~ 462 (1071)
..|++++|..+|..||.
T Consensus 18 ~~g~y~eAl~~Y~~aie 34 (77)
T cd02683 18 QEGRFQEALVCYQEGID 34 (77)
T ss_pred HhccHHHHHHHHHHHHH
Confidence 67888888888888873
No 484
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=27.13 E-value=83 Score=27.66 Aligned_cols=14 Identities=29% Similarity=0.453 Sum_probs=8.0
Q ss_pred CCHHHHHHHHHHHh
Q 001481 372 GDTSAARAAFPESY 385 (1071)
Q Consensus 372 g~~~~A~~~~~~al 385 (1071)
|..+.|+..|++++
T Consensus 22 g~~e~Al~~Y~~gi 35 (79)
T cd02679 22 GDKEQALAHYRKGL 35 (79)
T ss_pred CCHHHHHHHHHHHH
Confidence 55555555555555
No 485
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=26.91 E-value=5.7e+02 Score=25.19 Aligned_cols=68 Identities=10% Similarity=-0.063 Sum_probs=41.5
Q ss_pred HHHHHHHHHHc---CCHHHHHHHHHHHHHHHhhhccCCCcHHHH-HHHHHHHHhhcCCHHHHHHHHHHHHhhCCChHH
Q 001481 396 VTFKANMERRL---GNFVAACDTYKEALETAAEQRKFHTLPLLY-VQFSRLTYTTTGSADNARDILIDGIKHVPNCKL 469 (1071)
Q Consensus 396 w~~~a~le~~~---g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~-~~~A~~~~~~~g~~e~Ar~i~e~al~~~P~~~~ 469 (1071)
-+.++..+.+. .+..+-+.+++..++.. .|..-.-+ +.+|--.+ +.|.|++|+.+.+..|+..|++..
T Consensus 35 ~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~-----~~~~rRe~lyYLAvg~y-RlkeY~~s~~yvd~ll~~e~~n~Q 106 (149)
T KOG3364|consen 35 QFNLAWALVRSRDTEDVQEGIVILEDLLKSA-----HPERRRECLYYLAVGHY-RLKEYSKSLRYVDALLETEPNNRQ 106 (149)
T ss_pred HHHHHHHHHcccchHHHHHhHHHHHHHhhhc-----CcccchhhhhhhHHHHH-HHhhHHHHHHHHHHHHhhCCCcHH
Confidence 33444444433 34456677777777521 23322222 22333334 899999999999999999998765
No 486
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=26.79 E-value=2e+02 Score=21.10 Aligned_cols=20 Identities=10% Similarity=-0.029 Sum_probs=8.6
Q ss_pred HHHHHHHHHHhCCHHHHHHH
Q 001481 76 WRKYADHKARLCSIDKVVEV 95 (1071)
Q Consensus 76 W~~~a~~e~~~~~~e~A~~l 95 (1071)
|..++-..-..|++++|+++
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHH
Confidence 44444444444444444444
No 487
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=26.46 E-value=1.3e+02 Score=26.56 Aligned_cols=17 Identities=18% Similarity=0.284 Sum_probs=13.6
Q ss_pred hcCCHHHHHHHHHHHHh
Q 001481 446 TTGSADNARDILIDGIK 462 (1071)
Q Consensus 446 ~~g~~e~Ar~i~e~al~ 462 (1071)
+.|+.+.|...|++|+.
T Consensus 20 E~g~~e~Al~~Y~~gi~ 36 (79)
T cd02679 20 EWGDKEQALAHYRKGLR 36 (79)
T ss_pred hcCCHHHHHHHHHHHHH
Confidence 56888888888888875
No 488
>CHL00185 ycf59 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=26.38 E-value=9.7e+02 Score=27.03 Aligned_cols=155 Identities=10% Similarity=0.135 Sum_probs=85.5
Q ss_pred HHHHHHhCCC-CHHHHHHHHHHHHhcCCCcHHHH----HHHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHH-HHHHHHHH
Q 001481 26 LEEFIAEGSL-DFDEWTSLLSEIENSCPDDIEMI----GLVYDSFLAEFPLCYGYWRKYADHKARLCSIDK-VVEVFERA 99 (1071)
Q Consensus 26 le~al~~nP~-d~~~W~~li~~~~~~~~~~~~~a----~~vyeraL~~~P~s~~lW~~~a~~e~~~~~~e~-A~~lferA 99 (1071)
+++.-+.+-. +-..|..+++..+. |+.+. ..-|++.... .++++-..++++.++....|= -.-+|.+.
T Consensus 28 F~~m~~~dis~~~~e~~A~l~E~r~----DyNr~HF~R~~eF~~~~d~--l~~e~r~~FidFLerScTaEFSGflLYKEl 101 (351)
T CHL00185 28 FDEMANYDISSNIEEIEAILEEFRA----DYNQQHFIRDNEFNQSWSN--LDEKTKSLFVEFLERSCTAEFSGFLLYKEL 101 (351)
T ss_pred HHHHHhcCCchhHHHHHHHHHHHHh----CccccccccChhhhhchhh--CCHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Confidence 4444444443 45677777777663 22211 1123332222 345555666666555433221 11223322
Q ss_pred HHhc-CCCHHHHHHHHHHHHhhCCChhHHHH--HHHHHHHhcCCCCC------------chHHHHHHHHHHHHccCHHHH
Q 001481 100 VQSA-TYSVDVWFHYCSLSMSTFEDPNDVRR--LFKRALSFVGKDYL------------CHTMWDKYIEFEISQQRWSSL 164 (1071)
Q Consensus 100 L~~~-P~s~~lW~~y~~~~~~~~~~~e~ar~--l~erAL~~~~~~~~------------s~~lW~~yi~fe~~~~~~~~a 164 (1071)
-+.. -.+++|-..+. ++- .++||. .+++|+...|.... -..=|+.|+.++.++-.+-..
T Consensus 102 ~rrlk~~nP~lae~F~-lMa-----RDEARHAGFlNkam~df~l~lDLgfLtk~rkYTfF~PkfI~YAtYLSEKIGYwRY 175 (351)
T CHL00185 102 SRKLKDKNPLLAEGFL-LMS-----RDEARHAGFLNKAMSDFNLSLDLGFLTKSRKYTFFSPKFIFYATYLSEKIGYWRY 175 (351)
T ss_pred HHHhccCCcHHHHHHH-HHh-----hhhHHHhhhHHHHHHHcCccccchhhccCCceeeecccceehhhHHHhhhhhhHH
Confidence 2222 12233332222 211 134554 47778776544211 124588888888887777888
Q ss_pred HHHHHHHhccCCccHHHHHHHHHHHHHh
Q 001481 165 AQIFVQTLRFPSKKLHHYYDSFKKLAGA 192 (1071)
Q Consensus 165 ~~iy~ral~~p~~~l~~~~~~~~~~~~~ 192 (1071)
+.||+..-+.|...+.-++.-|+.|.++
T Consensus 176 ItIyRHLe~~Pe~r~~PIF~~FE~WCqD 203 (351)
T CHL00185 176 ITIYRHLEKNPEYRIYPIFKFFESWCQD 203 (351)
T ss_pred hHHHHHHHhCcccccchHHHHHHHHhcc
Confidence 8999998899999999999999999876
No 489
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=26.32 E-value=7.2e+02 Score=27.39 Aligned_cols=60 Identities=15% Similarity=0.003 Sum_probs=51.9
Q ss_pred HHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCChHH
Q 001481 403 ERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKL 469 (1071)
Q Consensus 403 e~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~~~P~~~~ 469 (1071)
+.+.+..+.|..+-++.+.+ .|.++.-+-.-|.+|. ..|.+..|+.-++..++.+|+...
T Consensus 191 ~~~e~~~~~al~~~~r~l~l------~P~dp~eirDrGliY~-ql~c~~vAl~dl~~~~~~~P~~~~ 250 (269)
T COG2912 191 LLRELQWELALRVAERLLDL------NPEDPYEIRDRGLIYA-QLGCYHVALEDLSYFVEHCPDDPI 250 (269)
T ss_pred HHHhhchHHHHHHHHHHHhh------CCCChhhccCcHHHHH-hcCCchhhHHHHHHHHHhCCCchH
Confidence 34457789999999999998 7888888888888888 999999999999999999998765
No 490
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=26.23 E-value=5.9e+02 Score=24.41 Aligned_cols=38 Identities=13% Similarity=0.249 Sum_probs=26.2
Q ss_pred HHhCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhC
Q 001481 300 EKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKG 337 (1071)
Q Consensus 300 ~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g 337 (1071)
...+....+..+++.++...+....+...++..+.+.+
T Consensus 18 ~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~ 55 (140)
T smart00299 18 EKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD 55 (140)
T ss_pred HhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC
Confidence 34456677777777777766667777777777776543
No 491
>KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only]
Probab=25.97 E-value=2.4e+02 Score=33.87 Aligned_cols=148 Identities=7% Similarity=-0.120 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCcCCCCCCCCCCCCCcccCCCCcccccCCccCCCCCCccccccccCCCcCCCCCCCCCCCCCCCC
Q 001481 799 TVSPSSSASHQNFIPEAHSHPQTPANSGRNWHEQQNPDRVHRDLRFGYRGHSHKRQHQQRRFSSQRYPRNESGDQMPMNS 878 (1071)
Q Consensus 799 ~~~p~s~~~~~~~~p~~~~~p~~~~n~~~n~~~~~~~~~~~~~p~~~~~~~~~~~~~qq~~~~~~~~~~~~~~~~~~~~~ 878 (1071)
+..|++ +|-.+.+++..+|-+++..+-.+++. .+..++...-|..-..+..+. ...+.+...+..+. +
T Consensus 292 ~~~p~~-------GPgdH~h~~~~~p~dq~hpqA~~~~~---~~prqpp~p~~~~~~P~~p~~-~~~h~~~~~pg~pG-p 359 (757)
T KOG4368|consen 292 PPPPAP-------GPGPHDQIPPNKPFDQPHPVAPWGQQ---QPPEQPPYPHHQGGPPHCPPW-NNSHEGRGDPGWNG-P 359 (757)
T ss_pred CCCCCC-------CCCcccccCCCCCCCCCCCCCCCCCC---CCccCCCCCCcccCCCCCCCC-CcccccCCCCCCCC-C
Q ss_pred CCCCCCCCCCCCcchhhHhhhhhhhhhccccCCCcchhhhccccCCCCCCCCCCCCCCCCccccCCCCcchhhhHhhhhh
Q 001481 879 RFPSQPLPSQNPQAQQGSQAQSQFLHSLTAQAWPMQNMQQQTFASASQSEVPAQPVFYPQAQMSQYPSQSSEQQGLLQSN 958 (1071)
Q Consensus 879 ~~~~q~~~~~~~q~qq~~q~q~q~~~~~~~~~~~~q~~q~q~~~~~~q~~~~~q~~~~~q~~~~q~~~q~~~q~~~~qqq 958 (1071)
..+.+..-.+..+-+-.+-.+-+.+.+++...+.++.++++. ++.+..+++....+..+.++++....+......+
T Consensus 360 ~~~n~g~a~g~q~~~p~~~~~~q~p~~g~epp~~~q~~~~~~----qq~~Q~~qp~hp~n~~ppgq~q~d~s~~~~~~~~ 435 (757)
T KOG4368|consen 360 WNNNPDAAWGSQFEGPWNSQHEQPPWGGGEPPFRMQGPFPPH----QQHPQFNQPPHPFNRFPPRFMQDDFPPRHPFERP 435 (757)
T ss_pred CCCCCCCCcccccCCccccccccCcccCCCCchhhcCcCchh----hhccccCCCCCccccCChhhcccccCcccccccC
Q ss_pred HHHH
Q 001481 959 LAYN 962 (1071)
Q Consensus 959 ~q~~ 962 (1071)
..+.
T Consensus 436 p~~~ 439 (757)
T KOG4368|consen 436 PYPH 439 (757)
T ss_pred cccc
No 492
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=25.64 E-value=4.8e+02 Score=30.03 Aligned_cols=125 Identities=9% Similarity=-0.029 Sum_probs=0.0
Q ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHH-HHHHHHHH
Q 001481 23 KQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVV-EVFERAVQ 101 (1071)
Q Consensus 23 ~~~le~al~~nP~d~~~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P~s~~lW~~~a~~e~~~~~~e~A~-~lferAL~ 101 (1071)
...||.++..+|.|+..-+.++.+|.-. |-...|..+|+.+=-.+=....+......-....+....+. .+++.++.
T Consensus 203 i~lLE~~l~~s~~n~~~~LlLvrlY~~L--G~~~~A~~~~~~L~iK~IQ~DTL~h~~~~r~~~~~~~~~~~~~~~~~~~~ 280 (365)
T PF09797_consen 203 IALLEHALKKSPHNYQLKLLLVRLYSLL--GAGSLALEHYESLDIKNIQLDTLGHLILDRLSTLGPFKSAPENLLENALK 280 (365)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHc--CCHHHHHHHHHhcChHHHHHHHhHHHHHHHHhccCcccccchHHHHHHHH
Q ss_pred hcCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhcCCCCCchHHHHHHHHHHH
Q 001481 102 SATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEI 156 (1071)
Q Consensus 102 ~~P~s~~lW~~y~~~~~~~~~~~e~ar~l~erAL~~~~~~~~s~~lW~~yi~fe~ 156 (1071)
..-.+..=-..++....+. |.+.++....+---+. ...++......|.
T Consensus 281 fy~~~~~~~~e~i~~af~~-gsysKi~ef~~F~~rL------~~S~~~~~~~~E~ 328 (365)
T PF09797_consen 281 FYDNSEKETPEFIIKAFEN-GSYSKIEEFIEFRERL------RNSLQRAMSRIER 328 (365)
T ss_pred HHHHHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHH------HHHHHHHHHHHHH
No 493
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=25.58 E-value=1e+03 Score=27.07 Aligned_cols=147 Identities=19% Similarity=0.101 Sum_probs=0.0
Q ss_pred CCCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHhhcC-CCCCHHHHHHHHHHHHhhCCHH----HHHHHHHHHHHHhh
Q 001481 280 HVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIP-CADYPEFWMRYVDFMESKGGRE----IASYALDRATQIFL 354 (1071)
Q Consensus 280 ~~~~~~p~~~~~W~~y~~~~~~~g~~~~a~~~yerAL~~-~p~~~~lW~~ya~~l~~~g~~e----~A~~il~rAl~~~~ 354 (1071)
....+...+..+|..-. +++...+..||+.. .|.-..+--..+-++...-.-+ .++..+-.++.. .
T Consensus 255 ~~vlL~dQDr~lW~r~l--------I~eg~all~rA~~~~~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~-~ 325 (415)
T COG4941 255 EPVLLEDQDRSLWDRAL--------IDEGLALLDRALASRRPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQ-A 325 (415)
T ss_pred CeeeccccchhhhhHHH--------HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHH-h
Q ss_pred ccchHHHHHHHHHHHHhCCHHHHHHHHHHHhhcc--ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCc
Q 001481 355 KRLPVIHLFNARYKEQIGDTSAARAAFPESYIDS--DSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTL 432 (1071)
Q Consensus 355 ~~~p~i~~~~a~~e~~~g~~~~A~~~~~~al~~~--~p~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~ 432 (1071)
--.|.+-++-+-...+..-.+.++.+.+... +- -.++...|-..+.++.++|..++|+..|++|+.+ ..+.
T Consensus 326 apSPvV~LNRAVAla~~~Gp~agLa~ve~L~-~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~L------a~~~ 398 (415)
T COG4941 326 APSPVVTLNRAVALAMREGPAAGLAMVEALL-ARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIAL------ARNA 398 (415)
T ss_pred CCCCeEeehHHHHHHHhhhHHhHHHHHHHhh-cccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHh------cCCh
Q ss_pred HHHHHHHHHH
Q 001481 433 PLLYVQFSRL 442 (1071)
Q Consensus 433 ~~l~~~~A~~ 442 (1071)
.+--+-..++
T Consensus 399 aer~~l~~r~ 408 (415)
T COG4941 399 AERAFLRQRL 408 (415)
T ss_pred HHHHHHHHHH
No 494
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=24.99 E-value=3.9e+02 Score=26.24 Aligned_cols=87 Identities=9% Similarity=0.082 Sum_probs=0.0
Q ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-HCCCCHHHHHHHHHH-HHHhCCHHHHHHHHHHHH
Q 001481 23 KQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLA-EFPLCYGYWRKYADH-KARLCSIDKVVEVFERAV 100 (1071)
Q Consensus 23 ~~~le~al~~nP~d~~~W~~li~~~~~~~~~~~~~a~~vyeraL~-~~P~s~~lW~~~a~~-e~~~~~~e~A~~lferAL 100 (1071)
++.++++..-++.--.......-+..+....++.+...+++..++ ..|..-.-.+.|+.+ ..+.++|++++.+....|
T Consensus 19 e~~~rq~a~~~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll 98 (149)
T KOG3364|consen 19 EEILRQAARSDVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALL 98 (149)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHH
Q ss_pred HhcCCCHHH
Q 001481 101 QSATYSVDV 109 (1071)
Q Consensus 101 ~~~P~s~~l 109 (1071)
+..|.+...
T Consensus 99 ~~e~~n~Qa 107 (149)
T KOG3364|consen 99 ETEPNNRQA 107 (149)
T ss_pred hhCCCcHHH
No 495
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=24.42 E-value=5.4e+02 Score=32.25 Aligned_cols=159 Identities=11% Similarity=0.027 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHhhccCh------------hhHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHHHh
Q 001481 362 LFNARYKEQIGDTSAARAAFPESYIDSDS------------RFIEKVTFKANMERRLGN-----FVAACDTYKEALETAA 424 (1071)
Q Consensus 362 ~~~a~~e~~~g~~~~A~~~~~~al~~~~p------------~~~~~w~~~a~le~~~g~-----~~~A~~~y~~Al~~~~ 424 (1071)
+...+++.-+|.|++|++.-.++-..++- ++.+.|+.-+.-....-. -++.+.++++.+..
T Consensus 63 L~~SKVyy~Lgeye~Al~yAL~ag~~F~Vd~~S~y~etivak~id~yi~~~~~~~~~~~~~~~iD~rL~~iv~rmi~k-- 140 (929)
T KOG2062|consen 63 LLASKVYYYLGEYEDALEYALRAGDDFDVDENSDYVETIVAKCIDMYIETASETYKNPEQKSPIDQRLRDIVERMIQK-- 140 (929)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCccccccCccchhhHHHHHHHHHHHHHHHHHhcCccccCCCCHHHHHHHHHHHHH--
Q ss_pred hhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCCCchhhHHHHHHHhhccCCcc
Q 001481 425 EQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLLLEELIKFTMVHGGRSHISIVDAVISNALYSRPDV 504 (1071)
Q Consensus 425 ~~~~~p~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~~~P~~~~lw~~~~~~e~~~g~~~~a~~~r~l~e~Al~~~~d~ 504 (1071)
.-...++|..+|..++ -....++++|+-..-........++++.....+..+.| -.+++..+...-
T Consensus 141 ----cl~d~e~~~aiGia~E------~~rld~ie~Ail~~d~~~~~~~yll~l~~s~v~~~efR--~~vlr~lv~~y~-- 206 (929)
T KOG2062|consen 141 ----CLDDNEYKQAIGIAFE------TRRLDIIEEAILKSDSVIGNLTYLLELLISLVNNREFR--NKVLRLLVKTYL-- 206 (929)
T ss_pred ----hhhhhHHHHHHhHHhh------hhhHHHHHHHhccccccchHHHHHHHHHHHHHhhHHHH--HHHHHHHHHHHc--
Q ss_pred cccCChhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001481 505 LKVFSLEDVEDISSLYLQQFLDLCGTIHDIRNAWNQHIK 543 (1071)
Q Consensus 505 ~~~l~~~~~~~lw~~~l~~~e~~~G~~e~a~~~~~ra~~ 543 (1071)
.++..+--.+...|+ -..+.+.+.+++++..+
T Consensus 207 --~~~~PDy~~vc~c~v-----~Ldd~~~va~ll~kL~~ 238 (929)
T KOG2062|consen 207 --KLPSPDYFSVCQCYV-----FLDDAEAVADLLEKLVK 238 (929)
T ss_pred --cCCCCCeeeeeeeeE-----EcCCHHHHHHHHHHHHh
No 496
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=24.41 E-value=4.8e+02 Score=23.06 Aligned_cols=65 Identities=12% Similarity=0.030 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Q 001481 391 RFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIK 462 (1071)
Q Consensus 391 ~~~~~w~~~a~le~~~g~~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~ 462 (1071)
+..+-.+..+.-+......++|+.+++++++. ....+..|..+|.+.- ...+.-+-|+.++-|+.
T Consensus 4 ~~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k------~~~~~~rf~~lG~l~q-A~~e~Gkyr~~L~fA~~ 68 (80)
T PF10579_consen 4 DQAKQQIEKGLKLYHQNETQQALQKWRKALEK------ITDREDRFRVLGYLIQ-AHMEWGKYREMLAFALQ 68 (80)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHhh------cCChHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
No 497
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=24.20 E-value=4.8e+02 Score=22.74 Aligned_cols=57 Identities=16% Similarity=0.055 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhccchHHHHHHHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHH----HHHHHcCCHHHHHHH
Q 001481 340 EIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKA----NMERRLGNFVAACDT 415 (1071)
Q Consensus 340 e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~~A~~~~~~al~~~~p~~~~~w~~~a----~le~~~g~~~~A~~~ 415 (1071)
..|+.+..+|++. ...|++++|..+|..++ +.....+.+. ...... ..++..+
T Consensus 4 ~~Ai~~a~~Ave~----------------D~~g~y~eA~~~Y~~ai-----e~l~~~~~~~~~n~~~k~~i--r~K~~eY 60 (76)
T cd02681 4 RDAVQFARLAVQR----------------DQEGRYSEAVFYYKEAA-----QLLIYAEMAGTLNDSHLKTI--QEKSNEY 60 (76)
T ss_pred HHHHHHHHHHHHH----------------HHccCHHHHHHHHHHHH-----HHHHHHHHhcCCChHHHHHH--HHHHHHH
Q ss_pred HHHH
Q 001481 416 YKEA 419 (1071)
Q Consensus 416 y~~A 419 (1071)
.+||
T Consensus 61 l~RA 64 (76)
T cd02681 61 LDRA 64 (76)
T ss_pred HHHH
No 498
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=23.71 E-value=1.2e+02 Score=26.19 Aligned_cols=34 Identities=18% Similarity=0.236 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhC
Q 001481 409 FVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHV 464 (1071)
Q Consensus 409 ~~~A~~~y~~Al~~~~~~~~~p~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~~~ 464 (1071)
++.|+.++.+|++. + ..|++++|..+|..|+..+
T Consensus 3 ~~~A~~l~~~Av~~------D----------------~~g~y~eA~~~Y~~aie~l 36 (75)
T cd02678 3 LQKAIELVKKAIEE------D----------------NAGNYEEALRLYQHALEYF 36 (75)
T ss_pred HHHHHHHHHHHHHH------H----------------HcCCHHHHHHHHHHHHHHH
No 499
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=23.62 E-value=5.1e+02 Score=26.84 Aligned_cols=75 Identities=20% Similarity=0.174 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHCCC---CHHHHHHHHHH-----HHHhCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChhH
Q 001481 55 IEMIGLVYDSFLAEFPL---CYGYWRKYADH-----KARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPND 126 (1071)
Q Consensus 55 ~~~a~~vyeraL~~~P~---s~~lW~~~a~~-----e~~~~~~e~A~~lferAL~~~P~s~~lW~~y~~~~~~~~~~~e~ 126 (1071)
++.|.-+++..-+.++. -.+.-..+++. .++.|.+++|.++|+|... +|.+.+.-..++.++.+. +.+..
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~K-d~~h~ 162 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIREK-DPAHP 162 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHcc-ccccH
Q ss_pred HHHHH
Q 001481 127 VRRLF 131 (1071)
Q Consensus 127 ar~l~ 131 (1071)
....|
T Consensus 163 ~lqnF 167 (200)
T cd00280 163 VLQNF 167 (200)
T ss_pred HHHhc
No 500
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=23.04 E-value=3.1e+02 Score=32.13 Aligned_cols=136 Identities=8% Similarity=0.028 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH-------HHHHhhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCh
Q 001481 395 KVTFKANMERRLGNFVAACDTYKEA-------LETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNC 467 (1071)
Q Consensus 395 ~w~~~a~le~~~g~~~~A~~~y~~A-------l~~~~~~~~~p~~~~l~~~~A~~~~~~~g~~e~Ar~i~e~al~~~P~~ 467 (1071)
..+.+.++..-+|++..|.++++-. ...+ .+..-.++...|-.+. ..+++.+|.++|...|-..-..
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V-----~~~~is~~YyvGFayl-MlrRY~DAir~f~~iL~yi~r~ 197 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKV-----PACHISTYYYVGFAYL-MLRRYADAIRTFSQILLYIQRT 197 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccC-----cchheehHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh
Q ss_pred H-HHHHHHHHHHHHcCCCCchhhHHHHHHHhhccCCcccccCChhhHHHHHHHHHHHHH-HhcCCHHHHHHHHHHHH
Q 001481 468 K-LLLEELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQQFL-DLCGTIHDIRNAWNQHI 542 (1071)
Q Consensus 468 ~-~lw~~~~~~e~~~g~~~~a~~~r~l~e~Al~~~~d~~~~l~~~~~~~lw~~~l~~~e-~~~G~~e~a~~~~~ra~ 542 (1071)
. .....-..........+++- .++-=++...| ..++......+-..|..+++ ...|+.+...+++.+|+
T Consensus 198 k~~~~~~~~q~d~i~K~~eqMy---aLlAic~~l~p---~~lde~i~~~lkeky~ek~~kmq~gd~~~f~elF~~ac 268 (404)
T PF10255_consen 198 KNQYHQRSYQYDQINKKNEQMY---ALLAICLSLCP---QRLDESISSQLKEKYGEKMEKMQRGDEEAFEELFSFAC 268 (404)
T ss_pred hhhhccccchhhHHHhHHHHHH---HHHHHHHHhCC---CCCCHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHhhC
Done!