Query 001481
Match_columns 1071
No_of_seqs 507 out of 3350
Neff 8.2
Searched_HMMs 29240
Date Tue Mar 26 16:13:54 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001481.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_783-787//hhsearch_pdb/001481hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4e6h_A MRNA 3'-END-processing 1.0 1 1 475.6 51.4 467 19-552 48-578 (679)
2 2ooe_A Cleavage stimulation fa 1.0 1 1 410.9 50.0 476 25-579 1-516 (530)
3 2uy1_A Cleavage stimulation fa 1.0 1 1 341.4 39.7 421 53-579 8-453 (493)
4 4e6h_A MRNA 3'-END-processing 1.0 1 1 321.9 40.6 416 24-502 87-572 (679)
5 2ooe_A Cleavage stimulation fa 1.0 1 1 292.5 39.8 415 22-502 31-494 (530)
6 2uy1_A Cleavage stimulation fa 1.0 1 1 279.7 23.4 412 53-548 28-455 (493)
7 1w3b_A UDP-N-acetylglucosamine 1.0 1 1 238.6 47.6 350 25-502 21-370 (388)
8 1w3b_A UDP-N-acetylglucosamine 1.0 1 1 234.5 43.7 369 44-550 6-374 (388)
9 2xpi_A Anaphase-promoting comp 1.0 1 1 232.9 48.4 470 30-549 76-584 (597)
10 2ond_A Cleavage stimulation fa 1.0 1 1 228.3 25.0 268 285-579 4-294 (308)
No 1
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=1.00 E-value=1 Score=475.57 Aligned_cols=467 Identities=14% Similarity=0.196 Sum_probs=393.2
Q ss_pred CCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC---HHHHHHH
Q ss_conf 8853677999999499999999999999992099918999999999999899998999999999998099---8899999
Q 001481 19 VGFGKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCS---IDKVVEV 95 (1071)
Q Consensus 19 ~~~~~~~le~~i~~nP~d~~~W~~li~~~~~~~~~~~~~a~~iyeral~~~P~s~~lW~~ya~~e~~~~~---~e~A~~l 95 (1071)
-.+....||+.|..||.|+..|..|+++++.. +.+..++.+|++++..+|.++++|+.|++++.+.++ ++.++.+
T Consensus 48 ~~d~i~~lE~~l~~np~d~~~W~~yi~~~~~~--~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~l 125 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQPTDIFLYVKLLKHHVSL--KQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPV 125 (679)
T ss_dssp CSCHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 77899999999997868899999999999861--8299999999999998899879999999999863785059999999
Q ss_pred HHHHHHHCC--CCHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHCCC-CCCCHHHHHHHHHHHHH-------
Q ss_conf 999999448--9999999999999830799--------15899999999996098-88846899999999998-------
Q 001481 96 FERAVQSAT--YSVDVWFHYCSLSMSTFED--------PNDVRRLFKRALSFVGK-DYLCHTMWDKYIEFEIS------- 157 (1071)
Q Consensus 96 ferAL~~~P--~s~~lW~~y~~~~~~~~~~--------~e~ar~v~erAL~~~~~-~~~s~~lW~~yi~fe~~------- 157 (1071)
|+|||..+| .+++||..|+.|+... ++ .+.++.+|++||..+|. ++.++.||..|++|+..
T Consensus 126 feRal~~~~~~~sv~LW~~Yl~f~~~~-~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ 204 (679)
T 4e6h_A 126 LARCLSKELGNNDLSLWLSYITYVRKK-NDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKF 204 (679)
T ss_dssp HHHHTCSSSCCCCHHHHHHHHHHHHHH-SCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHH-CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCH
T ss_conf 999987547789899999999999985-5434565013899999999999981966556539999999999863545767
Q ss_pred --CCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCC
Q ss_conf --257799999999986168946899999999999867886542001468899987421776677563012577763228
Q 001481 158 --QQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLD 235 (1071)
Q Consensus 158 --~~~~~~~~~iy~ral~~p~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~i~~~~d 235 (1071)
.+.++.+|+||.|+|.+|..++..+|..|..|...++..+. . ..+
T Consensus 205 eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a------~----------------------~~~----- 251 (679)
T 4e6h_A 205 EEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTA------R----------------------RHI----- 251 (679)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTH------H----------------------HHH-----
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHH------H----------------------HHH-----
T ss_conf 7876899999999999828637799999999999973583118------8----------------------999-----
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC--------C----CCHHHHHHHHHHHHHHHHHC
Q ss_conf 63357877988899998899999999999999999987213576789--------8----99467997999999998709
Q 001481 236 PSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVK--------P----LDDIQLKNWHDYLSFAEKQG 303 (1071)
Q Consensus 236 ~~~~~~~a~~l~~~~~~~~~~y~~a~~~~~~~~~fE~ai~~~~~~~~--------~----l~p~~~~~W~~yi~~~~~~g 303 (1071)
. .....|..|+..+..+..++.+|.+.+.... + .....+.+|..|+.|++..+
T Consensus 252 -----------~----e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~ 316 (679)
T 4e6h_A 252 -----------G----ELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNK 316 (679)
T ss_dssp -----------H----HHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCT
T ss_pred -----------H----HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf -----------8----7337778899999999999986751166543200002589986648999999999999998487
Q ss_pred -------CHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHH-HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHH
Q ss_conf -------9779999999850479998999999999999508977999-99999999751124189999999999919989
Q 001481 304 -------DFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIAS-YALDRATQIFLKRLPVIHLFNARYKEQIGDTS 375 (1071)
Q Consensus 304 -------~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~eeA~-~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~e 375 (1071)
..++++.+|++||..+|.++++|+.||.|++..|+.++|+ .+|+||+.. .|....+|+.|+.+++..|+++
T Consensus 317 ~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e 395 (679)
T 4e6h_A 317 LELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIP 395 (679)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHCCHH
T ss_conf 666410168999999999998769977999999999986286789999999999986-8987799999999999848899
Q ss_pred HHHHHHHHHHHCC----------CH-----------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCHH
Q ss_conf 9999999876323----------81-----------22999999999999819999999999999999863104788399
Q 001481 376 AARAAFPESYIDS----------DS-----------RFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPL 434 (1071)
Q Consensus 376 ~A~~~~~~al~~~----------~p-----------~~~~~w~~~a~le~~~g~~~~A~~~yekAl~~~~~~~~~~~~~~ 434 (1071)
+|+.+|++++..+ .| ....+|+.|+.++++.|+++.||.+|.+|++.. ....+.
T Consensus 396 ~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~-----~~~~~~ 470 (679)
T 4e6h_A 396 EIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLK-----KLVTPD 470 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTG-----GGSCTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-----CCCCHH
T ss_conf 999999999988787766664116741245554113369999999999987088899999999999736-----898869
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 99999999975209989999999999960999199999999999981998713369999998650398633368924099
Q 001481 435 LYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLLLEELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVE 514 (1071)
Q Consensus 435 l~i~~A~~l~~~~g~~e~Ar~i~e~aL~~~p~~~~lw~~y~~le~~~g~~~~a~~~r~llekAl~~~~d~~~~l~~~~~~ 514 (1071)
+|+.+|.+++...++.+.||++|++|++.+|++..+|..|++|+...|+.+++ |++|++|+...+ +++...
T Consensus 471 lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~A---R~lferal~~~~------~~~~~~ 541 (679)
T 4e6h_A 471 IYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQV---KSLFESSIDKIS------DSHLLK 541 (679)
T ss_dssp HHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHH---HHHHHHHTTTSS------STTHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHH---HHHHHHHHHHCC------CHHHHH
T ss_conf 99999999999689889999999999987899539999999999808977899---999999987168------878999
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 99999999999941999999999999998299975554
Q 001481 515 DISSLYLQQFLDLCGTIHDIRNAWNQHIKLFPHTVRTA 552 (1071)
Q Consensus 515 ~lw~~~l~~~e~~~G~~~~a~~~~~ra~~~~p~~~~~~ 552 (1071)
.+|..|+ +||..+|+.+.+.++++|+.+++|++....
T Consensus 542 ~lw~~~~-~fE~~~G~~~~~~~v~~R~~~~~P~~~~~~ 578 (679)
T 4e6h_A 542 MIFQKVI-FFESKVGSLNSVRTLEKRFFEKFPEVNKLE 578 (679)
T ss_dssp HHHHHHH-HHHHHTCCSHHHHHHHHHHHHHSTTCCHHH
T ss_pred HHHHHHH-HHHHHCCCHHHHHHHHHHHHHHCCCCCHHH
T ss_conf 9999999-999986999999999999998689973899
No 2
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=1.00 E-value=1 Score=410.91 Aligned_cols=476 Identities=19% Similarity=0.315 Sum_probs=396.3
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCC
Q ss_conf 79999994999999999999999920999189999999999998999989999999999980998899999999999448
Q 001481 25 GLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSAT 104 (1071)
Q Consensus 25 ~le~~i~~nP~d~~~W~~li~~~~~~~~~~~~~a~~iyeral~~~P~s~~lW~~ya~~e~~~~~~e~A~~lferAL~~~P 104 (1071)
.|+++|+.+|.|+.+|..++.+ ... +++++++.+|++++..+|.++.+|+.|+.++.+.+++++|+.+|+|||..+|
T Consensus 1 ~le~al~~~P~~~~~w~~l~~~-~~~--~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p 77 (530)
T 2ooe_A 1 MAEKKLEENPYDLDAWSILIRE-AQN--QPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL 77 (530)
T ss_dssp CHHHHHHHCTTCHHHHHHHHHH-HHS--SCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC
T ss_pred CHHHHHHHCCCCHHHHHHHHHH-HHH--CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC
T ss_conf 9366865397779999999999-984--8799999999999987899799999999999866988999999999872289
Q ss_pred CCHHHHHHHHHHHHHHCCCHHHHH----HHHHHHHHHCCCCCCCHHHHHHHHHHHHH---------CCCHHHHHHHHHHH
Q ss_conf 999999999999983079915899----99999999609888846899999999998---------25779999999998
Q 001481 105 YSVDVWFHYCSLSMSTFEDPNDVR----RLFKRALSFVGKDYLCHTMWDKYIEFEIS---------QQRWSSLAQIFVQT 171 (1071)
Q Consensus 105 ~s~~lW~~y~~~~~~~~~~~e~ar----~v~erAL~~~~~~~~s~~lW~~yi~fe~~---------~~~~~~~~~iy~ra 171 (1071)
++++|..|+.++....++++.++ .+|++|+..+|.++.+..+|..|+.|+.. .+.++.++++|+|+
T Consensus 78 -~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a 156 (530)
T 2ooe_A 78 -HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 156 (530)
T ss_dssp -CHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf -8489999999999974650468999999999999977888660799999999996077765378773799999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 61689468999999999998678865420014688999874217766775630125777632286335787798889999
Q 001481 172 LRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRF 251 (1071)
Q Consensus 172 l~~p~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~i~~~~d~~~~~~~a~~l~~~~~ 251 (1071)
+..|......+|..|..|...++..+. ..++. +
T Consensus 157 l~~P~~~~~~~~~~~~~~e~~~~~~~~-----------~~~l~--------------------~---------------- 189 (530)
T 2ooe_A 157 CVNPMINIEQLWRDYNKYEEGINIHLA-----------KKMIE--------------------D---------------- 189 (530)
T ss_dssp TTSCCTTHHHHHHHHHHHHHHHCHHHH-----------HHHHH--------------------T----------------
T ss_pred HHCHHHHHHHHHHHHHHHHHHHCHHHH-----------HHHHH--------------------H----------------
T ss_conf 966663599999999999972166679-----------99999--------------------8----------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC----CHHHHHHHHHHHHHHHHHC----CH----HHHHHHHHHHHCCC
Q ss_conf 889999999999999999998721357678989----9467997999999998709----97----79999999850479
Q 001481 252 IGEQIYKEASQLDEKINCFENLIRRPYFHVKPL----DDIQLKNWHDYLSFAEKQG----DF----DWVVKLYERCLIPC 319 (1071)
Q Consensus 252 ~~~~~y~~a~~~~~~~~~fE~ai~~~~~~~~~l----~p~~~~~W~~yi~~~~~~g----~~----~~a~~~yerAL~~~ 319 (1071)
..+.|..|+..+..+..+..++++....+.+. ......+|..|+.++...+ +. .+++.+|++|+..+
T Consensus 190 -~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~ 268 (530)
T 2ooe_A 190 -RSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL 268 (530)
T ss_dssp -THHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf -5288887999999999999974203455899998657999999999999987097557751268899999999999857
Q ss_pred CCCHHHHHHHHHHHHH-------HCCHH-------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf 9989999999999995-------08977-------999999999997511241899999999999199899999999876
Q 001481 320 ADYPEFWMRYVDFMES-------KGGRE-------IASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESY 385 (1071)
Q Consensus 320 p~~~~lW~~ya~~l~~-------~g~~e-------eA~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~e~A~~~~~~al 385 (1071)
|.++++|+.|+.++.. .|+++ +|+.+|++|+....|..+.+|+.++.++...|++++|+.+|++++
T Consensus 269 p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al 348 (530)
T 2ooe_A 269 GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLL 348 (530)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 89779999999999983546553265122121149999999999998686657999999999986388999999999985
Q ss_pred HCCCHHH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Q ss_conf 3238122-999999999999819999999999999999863104788399999999999752099899999999999609
Q 001481 386 IDSDSRF-IEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHV 464 (1071)
Q Consensus 386 ~~~~p~~-~~~w~~~a~le~~~g~~~~A~~~yekAl~~~~~~~~~~~~~~l~i~~A~~l~~~~g~~e~Ar~i~e~aL~~~ 464 (1071)
.+.|.. ..+|+.++.++.+.|++++|+.+|++|++. .+..+.+|+..+.+++...|++++|+++|++|++.+
T Consensus 349 -~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~------~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~ 421 (530)
T 2ooe_A 349 -AIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED------ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY 421 (530)
T ss_dssp -HSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC------TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred -CCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHC------CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
T ss_conf -7645683099999999999806889999999999735------577508999999999988078359999999999878
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 99199999999999981998713369999998650398633368924099999999999999419999999999999982
Q 001481 465 PNCKLLLEELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQQFLDLCGTIHDIRNAWNQHIKL 544 (1071)
Q Consensus 465 p~~~~lw~~y~~le~~~g~~~~a~~~r~llekAl~~~~d~~~~l~~~~~~~lw~~~l~~~e~~~G~~~~a~~~~~ra~~~ 544 (1071)
|++..+|..|+.++...|+.+++ |.+|++|+..++ ++++....+|..|+ +||..+|+.+.+..++.|+.+.
T Consensus 422 p~~~~~~~~~~~~~~~~g~~~~A---r~~~~~al~~~~-----~~~~~~~~lw~~~~-~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 422 GDIPEYVLAYIDYLSHLNEDNNT---RVLFERVLTSGS-----LPPEKSGEIWARFL-AFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp TTCHHHHHHHHHHHTTTTCHHHH---HHHHHHHHHSCC-----SCGGGCHHHHHHHH-HHHHHSSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHH---HHHHHHHHHCCC-----CCHHHHHHHHHHHH-HHHHHCCCHHHHHHHHHHHHHH
T ss_conf 99789999999999867988669---999999984157-----98788999999999-9999829999999999999987
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHCCC
Q ss_conf 99975554557763203356664124403443079
Q 001481 545 FPHTVRTAYECPGRETKSLRAFIRGKRESNVASLP 579 (1071)
Q Consensus 545 ~p~~~~~~~~~~~~k~~~~~~~~~~~r~~~i~~lp 579 (1071)
+|+.... .. .. .-.+|..|...+|
T Consensus 493 ~p~~~~~--------~~-~~--~~~~r~~~~~~~~ 516 (530)
T 2ooe_A 493 FREEYEG--------KE-TA--LLVDRYKFMDLYP 516 (530)
T ss_dssp THHHHTT--------CH-HH--HHGGGTCBTTBCS
T ss_pred CCHHCCC--------CH-HH--HHHHHHHHCCCCC
T ss_conf 7311158--------54-89--9999987426678
No 3
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=1.00 E-value=1 Score=341.44 Aligned_cols=421 Identities=13% Similarity=0.146 Sum_probs=321.6
Q ss_pred C-CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 9-189999999999998999989999999999980998899999999999448999999999999983079915899999
Q 001481 53 D-DIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLF 131 (1071)
Q Consensus 53 ~-~~~~a~~iyeral~~~P~s~~lW~~ya~~e~~~~~~e~A~~lferAL~~~P~s~~lW~~y~~~~~~~~~~~e~ar~v~ 131 (1071)
| ++..+|.+|++++..+|. ++++.++.+|+|||..+| ++++|..|+.|........+.++.+|
T Consensus 8 ~~~i~~aR~vyer~l~~~P~---------------~~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~~f 71 (493)
T 2uy1_A 8 GVELSSPSAIMEHARRLYMS---------------KDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYEVY 71 (493)
T ss_dssp ----CCHHHHHHHHHHHHHT---------------TCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CTHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCC---------------CCHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf 76468899999999987799---------------999999999999856699-97999999999998475699999999
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHH----HCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
Q ss_conf 9999960988884689999999999----825779999999998616894689999999999986788654200146889
Q 001481 132 KRALSFVGKDYLCHTMWDKYIEFEI----SQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEF 207 (1071)
Q Consensus 132 erAL~~~~~~~~s~~lW~~yi~fe~----~~~~~~~~~~iy~ral~~p~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~~ 207 (1071)
++|+..+|.++.++.||..|++|+. ..+.++.+++||+|+|.+|..++..+|..|..|....+....
T Consensus 72 e~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~--------- 142 (493)
T 2uy1_A 72 EFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITG--------- 142 (493)
T ss_dssp HHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHH---------
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCH---------
T ss_conf 99998768886618999999999973606567999999999999827354699999999999987461017---------
Q ss_pred HHHHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHH
Q ss_conf 99874217766775630125777632286335787798889999889999999999999999998721357678989946
Q 001481 208 QSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDI 287 (1071)
Q Consensus 208 ~~~~~~~~~l~~~~~~~e~~~~i~~~~d~~~~~~~a~~l~~~~~~~~~~y~~a~~~~~~~~~fE~ai~~~~~~~~~l~p~ 287 (1071)
..+ +.. ....|..|+..+....... ++ .
T Consensus 143 --~~~-----------------~~~--------------------~~~~y~~ar~~y~~~~~~~---~~----------~ 170 (493)
T 2uy1_A 143 --KKI-----------------VGD--------------------TLPIFQSSFQRYQQIQPLI---RG----------W 170 (493)
T ss_dssp --HHH-----------------HHH--------------------HHHHHHHHHHHHHHHHHHH---HT----------C
T ss_pred --HHH-----------------HHH--------------------HHHHHHHHHHHHHHHHHHH---HH----------C
T ss_conf --889-----------------999--------------------8178899999999999887---43----------4
Q ss_pred HHHHHHHHHHHHHHHCC-------HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHH
Q ss_conf 79979999999987099-------77999999985047999899999999999950897799999999999751124189
Q 001481 288 QLKNWHDYLSFAEKQGD-------FDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVI 360 (1071)
Q Consensus 288 ~~~~W~~yi~~~~~~g~-------~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~eeA~~il~rAl~~~~~~~p~i 360 (1071)
...+|..|++|++.++. .+++..+|++|+..+|..+.+|+.|+.|++..|+.+.|+.+|+||+.. |....+
T Consensus 171 s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l 248 (493)
T 2uy1_A 171 SVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFL 248 (493)
T ss_dssp SHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHH
T ss_pred CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCCHHH
T ss_conf 299999999998629865762125999999999998728998999999999998759989999999998718--996999
Q ss_pred HHHHHHHHHHHCCHHHHHHHHHHHH-HC-------CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 9999999999199899999999876-32-------381229999999999998199999999999999998631047883
Q 001481 361 HLFNARYKEQIGDTSAARAAFPESY-ID-------SDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTL 432 (1071)
Q Consensus 361 ~~~~a~~e~~~g~~e~A~~~~~~al-~~-------~~p~~~~~w~~~a~le~~~g~~~~A~~~yekAl~~~~~~~~~~~~ 432 (1071)
|+.|+.+++....++ .++.+.+ .+ .......+|+.|+.++++.++++.|+.+|++| .. ....
T Consensus 249 ~~~y~~~~e~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~------~~~~ 318 (493)
T 2uy1_A 249 SLYYGLVMDEEAVYG---DLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN------EGVG 318 (493)
T ss_dssp HHHHHHHTTCTHHHH---HHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT------SCCC
T ss_pred HHHHHHHCCHHHHHH---HHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH-HC------CCCC
T ss_conf 999876510568999---9999998611101223204561899999999998717889999999986-27------7888
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHH
Q ss_conf 99999999999752099899999999999609991999999999999819987133699999986503986333689240
Q 001481 433 PLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLLLEELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLED 512 (1071)
Q Consensus 433 ~~l~i~~A~~l~~~~g~~e~Ar~i~e~aL~~~p~~~~lw~~y~~le~~~g~~~~a~~~r~llekAl~~~~d~~~~l~~~~ 512 (1071)
..+|+.+|.+++...++.+.||++|++|++.+|+.+.+|..|++|+...|+.+++ |.+|+++..
T Consensus 319 ~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~a---R~l~er~~k------------- 382 (493)
T 2uy1_A 319 PHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENA---RALFKRLEK------------- 382 (493)
T ss_dssp HHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH---HHHHHHSCC-------------
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHH---HHHHHHHHH-------------
T ss_conf 5999999999998789968999999999987899789999999999875987779---999999998-------------
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC---CC-CCCCCCCCCCHHHHHH-HHCCCHHHHHCCC
Q ss_conf 999999999999994199999999999999829997---55-5455776320335666-4124403443079
Q 001481 513 VEDISSLYLQQFLDLCGTIHDIRNAWNQHIKLFPHT---VR-TAYECPGRETKSLRAF-IRGKRESNVASLP 579 (1071)
Q Consensus 513 ~~~lw~~~l~~~e~~~G~~~~a~~~~~ra~~~~p~~---~~-~~~~~~~~k~~~~~~~-~~~~r~~~i~~lp 579 (1071)
+..+|..|+ +||..+|+.+.++++++++...+... .+ ..........+..+.+ .-.+|..|++..|
T Consensus 383 ~~~lw~~~~-~fE~~~G~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~fe~~~g~l~~~~~~~~~~~~~~ 453 (493)
T 2uy1_A 383 TSRMWDSMI-EYEFMVGSMELFRELVDQKMDAIKADAILPPLPPREHNVQMEGILGRYHCFLDSFNFLDLKI 453 (493)
T ss_dssp BHHHHHHHH-HHHHHHSCHHHHHHHHHHHHHHHHTTCCBCCCCCC--CCCCCHHHHHHHHHHHHHCBTTBCC
T ss_pred HHHHHHHHH-HHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 999999999-99997799999999999999984555457865422008999987504999988864200315
No 4
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=1.00 E-value=1 Score=321.86 Aligned_cols=416 Identities=12% Similarity=0.134 Sum_probs=221.4
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHCCCCC---HHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHCCH--------H
Q ss_conf 7799999949999999999999999209991---8999999999999899--9989999999999980998--------8
Q 001481 24 QGLEEFIAEGSLDFDEWTSLLSEIENSCPDD---IEMIGLVYDSFLAEFP--LCYGYWRKYADHKARLCSI--------D 90 (1071)
Q Consensus 24 ~~le~~i~~nP~d~~~W~~li~~~~~~~~~~---~~~a~~iyeral~~~P--~s~~lW~~ya~~e~~~~~~--------e 90 (1071)
..|++++..+|.+...|..|+++.... ++ +++++.+|+|++...| .++++|..|+++..+.++. +
T Consensus 87 ~vyEraL~~fP~~~~lW~~Yi~~E~~~--~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~ 164 (679)
T 4e6h_A 87 ETFDKLHDRFPLMANIWCMRLSLEFDK--MEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARN 164 (679)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHTC----CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHH
T ss_conf 999999998899879999999999863--785059999999999987547789899999999999985543456501389
Q ss_pred HHHHHHHHHHHHCC----CCHHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 99999999999448----99999999999998307--------9915899999999996098888468999999999982
Q 001481 91 KVVEVFERAVQSAT----YSVDVWFHYCSLSMSTF--------EDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQ 158 (1071)
Q Consensus 91 ~A~~lferAL~~~P----~s~~lW~~y~~~~~~~~--------~~~e~ar~v~erAL~~~~~~~~s~~lW~~yi~fe~~~ 158 (1071)
.++.+|++||..++ .+..||..|+.|+.... ..++.+|.+|+|||. +|... ...+|..|..|+...
T Consensus 165 ~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~-iP~~~-~~~~w~~Y~~fe~~~ 242 (679)
T 4e6h_A 165 IVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC-QPMDC-LESMWQRYTQWEQDV 242 (679)
T ss_dssp HHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT-SCCSS-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH-CCCHH-HHHHHHHHHHHHHHC
T ss_conf 9999999999981966556539999999999863545767787689999999999982-86377-999999999999735
Q ss_pred CCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCC---------C--CCCHHH
Q ss_conf 57799999999986168946899999999999867886542001468899987421776677---------5--630125
Q 001481 159 QRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAY---------Y--KDDETS 227 (1071)
Q Consensus 159 ~~~~~~~~iy~ral~~p~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~l~~~---------~--~~~e~~ 227 (1071)
+.. .+++++..... .+...+..|.++... .+.+ +..++.. . ...+..
T Consensus 243 ~~~-~a~~~~~e~~~----~y~~Ar~~~~e~~~~-~~~l----------------~r~~p~~~~~~~~~~~p~~~~~~~~ 300 (679)
T 4e6h_A 243 NQL-TARRHIGELSA----QYMNARSLYQDWLNI-TKGL----------------KRNLPITLNQATESNLPKPNEYDVQ 300 (679)
T ss_dssp CTT-THHHHHHHHHH----HHHHHHHHHHHHHHH-TTTC----------------CCCCCSSSTTCCTTTSCCTTCCCHH
T ss_pred CCC-HHHHHHHHHHH----HHHHHHHHHHHHHHH-HHHH----------------HHCCCCCCCCCHHCCCCCCCHHHHH
T ss_conf 831-18899987337----778899999999999-9867----------------5116654320000258998664899
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 777632286335787798889999889999999--------999999999998721357678989946799799999999
Q 001481 228 SVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEA--------SQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFA 299 (1071)
Q Consensus 228 ~~i~~~~d~~~~~~~a~~l~~~~~~~~~~y~~a--------~~~~~~~~~fE~ai~~~~~~~~~l~p~~~~~W~~yi~~~ 299 (1071)
.+..| .-++ .|++. ....+.+..|++++. ..|...++|+.|+.++
T Consensus 301 -ql~lW--------------~~yi----~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~--------~~p~~~~lW~~ya~~~ 353 (679)
T 4e6h_A 301 -QLLIW--------------LEWI----RWESDNKLELSDDLHKARMTYVYMQAAQ--------HVCFAPEIWFNMANYQ 353 (679)
T ss_dssp -HHHHH--------------HHHH----HHHHTCTTCCCHHHHHHHHHHHHHHHHH--------HTTTCHHHHHHHHHHH
T ss_pred -HHHHH--------------HHHH----HHHHHCCCCCCCHHHHHHHHHHHHHHHH--------HCCCCHHHHHHHHHHH
T ss_conf -99999--------------9999----9998487666410168999999999998--------7699779999999999
Q ss_pred HHHCCHHHHH-HHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH----------C-----------CC
Q ss_conf 8709977999-999985047999899999999999950897799999999999751----------1-----------24
Q 001481 300 EKQGDFDWVV-KLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFL----------K-----------RL 357 (1071)
Q Consensus 300 ~~~g~~~~a~-~~yerAL~~~p~~~~lW~~ya~~l~~~g~~eeA~~il~rAl~~~~----------~-----------~~ 357 (1071)
...|+.+.++ .+|++|+..||.+..+|+.|+.+++..|+++.|+.+|++++..+. | ..
T Consensus 354 ~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~ 433 (679)
T 4e6h_A 354 GEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKL 433 (679)
T ss_dssp HHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCH
T ss_conf 86286789999999999986898779999999999984889999999999998878776666411674124555411336
Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 189999999999919989999999987632381229999999999998199-9999999999999986310478839999
Q 001481 358 PVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGN-FVAACDTYKEALETAAEQRKFHTLPLLY 436 (1071)
Q Consensus 358 p~i~~~~a~~e~~~g~~e~A~~~~~~al~~~~p~~~~~w~~~a~le~~~g~-~~~A~~~yekAl~~~~~~~~~~~~~~l~ 436 (1071)
+.+|+.++.|+.+.+++++||.+|.+|++...+....+|+.++.+|.+.++ .+.|+++|+++++. ++..+.+|
T Consensus 434 ~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~------~p~~~~~w 507 (679)
T 4e6h_A 434 TYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY------FATDGEYI 507 (679)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH------HTTCHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH------CCCCHHHH
T ss_conf 999999999998708889999999999973689886999999999999689889999999999987------89953999
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 99999997520998999999999996099---9199999999999981998713369999998650398
Q 001481 437 VQFSRLTYTTTGSADNARDILIDGIKHVP---NCKLLLEELIKFTMVHGGRSHISIVDAVISNALYSRP 502 (1071)
Q Consensus 437 i~~A~~l~~~~g~~e~Ar~i~e~aL~~~p---~~~~lw~~y~~le~~~g~~~~a~~~r~llekAl~~~~ 502 (1071)
+.|+.++. ..|+.++||.+|++|+..+| ....+|..|++||..+|+.+.+ +.+.++++..+|
T Consensus 508 ~~y~~fe~-~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~---~~v~~R~~~~~P 572 (679)
T 4e6h_A 508 NKYLDFLI-YVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSV---RTLEKRFFEKFP 572 (679)
T ss_dssp HHHHHHHH-HHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHH---HHHHHHHHHHST
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHH---HHHHHHHHHHCC
T ss_conf 99999998-089778999999999871688789999999999999986999999---999999998689
No 5
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=1.00 E-value=1 Score=292.46 Aligned_cols=415 Identities=13% Similarity=0.200 Sum_probs=304.1
Q ss_pred CHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-HCCHHHHH----HHH
Q ss_conf 3677999999499999999999999992099918999999999999899998999999999998-09988999----999
Q 001481 22 GKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKAR-LCSIDKVV----EVF 96 (1071)
Q Consensus 22 ~~~~le~~i~~nP~d~~~W~~li~~~~~~~~~~~~~a~~iyeral~~~P~s~~lW~~ya~~e~~-~~~~e~A~----~lf 96 (1071)
....|+++++.+|.+...|..++.++... +++++++.+|++++..+| ++.+|..|+.+... .++++.|+ .+|
T Consensus 31 a~~~~e~al~~~P~~~~~w~~~~~~~~~~--~~~~~a~~~~~ral~~~p-~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~ 107 (530)
T 2ooe_A 31 ARKTYERLVAQFPSSGRFWKLYIEAEIKA--KNYDKVEKLFQRCLMKVL-HIDLWKCYLSYVRETKGKLPSYKEKMAQAY 107 (530)
T ss_dssp HHHHHHHHHTTCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHTTTCC-CHHHHHHHHHHHHHHTTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 99999999987899799999999999866--988999999999872289-848999999999997465046899999999
Q ss_pred HHHHHHC---CCCHHHHHHHHHHHHH---------HCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHH
Q ss_conf 9999944---8999999999999983---------079915899999999996098888468999999999982577999
Q 001481 97 ERAVQSA---TYSVDVWFHYCSLSMS---------TFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSL 164 (1071)
Q Consensus 97 erAL~~~---P~s~~lW~~y~~~~~~---------~~~~~e~ar~v~erAL~~~~~~~~s~~lW~~yi~fe~~~~~~~~~ 164 (1071)
++|+..+ |.+..+|..|+.|+.. . ++++.|+.+|++|+. .|... ...+|..|..|+...+. ..+
T Consensus 108 ~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~-~~~~~a~~~y~~al~-~P~~~-~~~~~~~~~~~e~~~~~-~~~ 183 (530)
T 2ooe_A 108 DFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAEN-QRITAVRRVYQRGCV-NPMIN-IEQLWRDYNKYEEGINI-HLA 183 (530)
T ss_dssp HHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHH-HHHHHHHHHHHHHTT-SCCTT-HHHHHHHHHHHHHHHCH-HHH
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCHHHH-HHHHHHHHHHHHHHH-CHHHH-HHHHHHHHHHHHHHHCH-HHH
T ss_conf 999997788866079999999999607776537877-379999999999996-66635-99999999999972166-679
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCC-CCCCC-HHHHHHHHHCCCCHHHHH
Q ss_conf 9999998616894689999999999986788654200146889998742177667-75630-125777632286335787
Q 001481 165 AQIFVQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPA-YYKDD-ETSSVIKDLLDPSVDLVR 242 (1071)
Q Consensus 165 ~~iy~ral~~p~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~l~~-~~~~~-e~~~~i~~~~d~~~~~~~ 242 (1071)
..++... . ..|......+.+. ..+...+ +..+.. ..... ........|
T Consensus 184 ~~~l~~~--------~---~~~~~A~~~~~~~---------~~~~~~l-~~~~~~~~p~~~~~~~~~~~~w--------- 233 (530)
T 2ooe_A 184 KKMIEDR--------S---RDYMNARRVAKEY---------ETVMKGL-DRNAPSVPPQNTPQEAQQVDMW--------- 233 (530)
T ss_dssp HHHHHTT--------H---HHHHHHHHHHHHH---------HHHHHHC-CSSSCCCCCC--CCHHHHHHHH---------
T ss_pred HHHHHHH--------H---HHHHHHHHHHHHH---------HHHHHHH-CCCCCCCCCCCCHHHHHHHHHH---------
T ss_conf 9999985--------2---8888799999999---------9999974-2034558999986579999999---------
Q ss_pred HHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH-------HCCHH
Q ss_conf 7988899998899999999---------9999999999872135767898994679979999999987-------09977
Q 001481 243 SKAIQKYRFIGEQIYKEAS---------QLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEK-------QGDFD 306 (1071)
Q Consensus 243 a~~l~~~~~~~~~~y~~a~---------~~~~~~~~fE~ai~~~~~~~~~l~p~~~~~W~~yi~~~~~-------~g~~~ 306 (1071)
..+ ..|.+.. ...+.+..|++++. ..|....+|..|+.++.. .|+++
T Consensus 234 ----~~~-----~~~e~~~~~~~~~~~~~~~~a~~~y~~al~--------~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~ 296 (530)
T 2ooe_A 234 ----KKY-----IQWEKSNPLRTEDQTLITKRVMFAYEQCLL--------VLGHHPDIWYEAAQYLEQSSKLLAEKGDMN 296 (530)
T ss_dssp ----HHH-----HHHHHHCSSCCSCSHHHHHHHHHHHHHHHH--------HHTTCHHHHHHHHHHHHHHHHHHHTTTCCH
T ss_pred ----HHH-----HHHHHCCCCCCCCCHHHHHHHHHHHHHHHH--------HCCCCHHHHHHHHHHHHHHCHHHHHCCCHH
T ss_conf ----999-----999870975577512688999999999998--------578977999999999998354655326512
Q ss_pred -------HHHHHHHHHHC-CCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHCCHHHH
Q ss_conf -------99999998504-79998999999999999508977999999999997511241-8999999999991998999
Q 001481 307 -------WVVKLYERCLI-PCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLP-VIHLFNARYKEQIGDTSAA 377 (1071)
Q Consensus 307 -------~a~~~yerAL~-~~p~~~~lW~~ya~~l~~~g~~eeA~~il~rAl~~~~~~~p-~i~~~~a~~e~~~g~~e~A 377 (1071)
.++.+|++|+. .+|.+..+|+.|+.+++..|++++|+.+|++++.+ .|..+ .+|+.++.++.+.|++++|
T Consensus 297 ~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~~~~~~~~~~~~~~~A 375 (530)
T 2ooe_A 297 NAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI-EDIDPTLVYIQYMKFARRAEGIKSG 375 (530)
T ss_dssp HHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS-SSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC-CCCCCHHHHHHHHHHHHHHCCHHHH
T ss_conf 212114999999999999868665799999999998638899999999998576-4568309999999999980688999
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 99999876323812299999999999-98199999999999999998631047883999999999997520998999999
Q 001481 378 RAAFPESYIDSDSRFIEKVTFKANME-RRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDI 456 (1071)
Q Consensus 378 ~~~~~~al~~~~p~~~~~w~~~a~le-~~~g~~~~A~~~yekAl~~~~~~~~~~~~~~l~i~~A~~l~~~~g~~e~Ar~i 456 (1071)
+.+|.+++ ...|....+|+..+.++ ...|++++|+.+|+++++. .|..+.+|+.++.++. ..|++++|+.+
T Consensus 376 ~~~~~~Al-~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~------~p~~~~~~~~~~~~~~-~~g~~~~Ar~~ 447 (530)
T 2ooe_A 376 RMIFKKAR-EDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK------YGDIPEYVLAYIDYLS-HLNEDNNTRVL 447 (530)
T ss_dssp HHHHHHHH-TCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH------HTTCHHHHHHHHHHHT-TTTCHHHHHHH
T ss_pred HHHHHHHH-HCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH------CCCCHHHHHHHHHHHH-HCCCHHHHHHH
T ss_conf 99999997-3557750899999999998807835999999999987------8997899999999998-67988669999
Q ss_pred HHHHHHHCCCH----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 99999609991----99999999999981998713369999998650398
Q 001481 457 LIDGIKHVPNC----KLLLEELIKFTMVHGGRSHISIVDAVISNALYSRP 502 (1071)
Q Consensus 457 ~e~aL~~~p~~----~~lw~~y~~le~~~g~~~~a~~~r~llekAl~~~~ 502 (1071)
|++++..+|.+ ..+|..|+.|+..+|+.+.+ ..++.+++...|
T Consensus 448 ~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~---~~~~~r~~~~~p 494 (530)
T 2ooe_A 448 FERVLTSGSLPPEKSGEIWARFLAFESNIGDLASI---LKVEKRRFTAFR 494 (530)
T ss_dssp HHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHH---HHHHHHHHHHTH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHH---HHHHHHHHHHCC
T ss_conf 99998415798788999999999999982999999---999999998773
No 6
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=1.00 E-value=1 Score=279.66 Aligned_cols=412 Identities=14% Similarity=0.139 Sum_probs=287.8
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHH---CCCHH
Q ss_conf 918999999999999899998999999999998099-88999999999994---489999999999999830---79915
Q 001481 53 DDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCS-IDKVVEVFERAVQS---ATYSVDVWFHYCSLSMST---FEDPN 125 (1071)
Q Consensus 53 ~~~~~a~~iyeral~~~P~s~~lW~~ya~~e~~~~~-~e~A~~lferAL~~---~P~s~~lW~~y~~~~~~~---~~~~e 125 (1071)
+++++++.+|+|++...| ++++|+.|+.++.+.++ .+.++.+|++|+.. ++.+.++|..|+.|+... .++++
T Consensus 28 ~~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~ 106 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIE 106 (493)
T ss_dssp TCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCHHHHHHHH
T ss_conf 999999999999856699-9799999999999847569999999999998768886618999999999973606567999
Q ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHH
Q ss_conf 89999999999609888846899999999998257799999999986168946899999999999867886542001468
Q 001481 126 DVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAM 205 (1071)
Q Consensus 126 ~ar~v~erAL~~~~~~~~s~~lW~~yi~fe~~~~~~~~~~~iy~ral~~p~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~ 205 (1071)
.+|++|+|||. +|... ...+|..|..|+...+ ...+.+++.+... .|......+.+...
T Consensus 107 ~vR~iy~rAL~-~P~~~-~~~lw~~Y~~fE~~~~-~~~~~~~~~~~~~-----------~y~~ar~~y~~~~~------- 165 (493)
T 2uy1_A 107 KIRNGYMRALQ-TPMGS-LSELWKDFENFELELN-KITGKKIVGDTLP-----------IFQSSFQRYQQIQP------- 165 (493)
T ss_dssp HHHHHHHHHHT-SCCTT-HHHHHHHHHHHHHHHC-HHHHHHHHHHHHH-----------HHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHH-CHHHH-HHHHHHHHHHHHHHHC-CCCHHHHHHHHHH-----------HHHHHHHHHHHHHH-------
T ss_conf 99999999982-73546-9999999999998746-1017889999817-----------88999999999998-------
Q ss_pred HHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 89998742177667756301257776322863357877988899998899999999999999999987213576789899
Q 001481 206 EFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLD 285 (1071)
Q Consensus 206 ~~~~~~~~~~~l~~~~~~~e~~~~i~~~~d~~~~~~~a~~l~~~~~~~~~~y~~a~~~~~~~~~fE~ai~~~~~~~~~l~ 285 (1071)
.. .. + ..+.+..+-.|....+... .......+....|++++.. .
T Consensus 166 -----~~-~~-----~-s~~~W~~y~~~E~~~~~~~----------------~~~~~~~Rv~~~ye~al~~--------~ 209 (493)
T 2uy1_A 166 -----LI-RG-----W-SVKNAARLIDLEMENGMKL----------------GGRPHESRMHFIHNYILDS--------F 209 (493)
T ss_dssp -----HH-HT-----C-SHHHHHHHHHHHHTCTTCC----------------CHHHHHHHHHHHHHHHHHH--------T
T ss_pred -----HH-HH-----C-CHHHHHHHHHHHHCCCCCC----------------CCHHHHHHHHHHHHHHHHC--------C
T ss_conf -----87-43-----4-2999999999986298657----------------6212599999999999872--------8
Q ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH--------HHHCCC
Q ss_conf 467997999999998709977999999985047999899999999999950897799999999999--------751124
Q 001481 286 DIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQ--------IFLKRL 357 (1071)
Q Consensus 286 p~~~~~W~~yi~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~eeA~~il~rAl~--------~~~~~~ 357 (1071)
|....+|..|+.++...|+.+.|+.+|+||+.. |....+|+.|+.+.+.. +....++++.+. ...+..
T Consensus 210 p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~---~~~~~l~~~~~~~~~~~~~~~~~~~~ 285 (493)
T 2uy1_A 210 YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEE---AVYGDLKRKYSMGEAESAEKVFSKEL 285 (493)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCT---HHHHHHHHHTC----------CHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC-CCCHHHHHHHHHHCCHH---HHHHHHHHHHHHHCCCHHHHHCCCCC
T ss_conf 998999999999998759989999999998718-99699999987651056---89999999998611101223204561
Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 18999999999991998999999998763238122999999999999819-99999999999999986310478839999
Q 001481 358 PVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLG-NFVAACDTYKEALETAAEQRKFHTLPLLY 436 (1071)
Q Consensus 358 p~i~~~~a~~e~~~g~~e~A~~~~~~al~~~~p~~~~~w~~~a~le~~~g-~~~~A~~~yekAl~~~~~~~~~~~~~~l~ 436 (1071)
..+|..|+.|+.+.+++++||.+|.+| .. .+....+|+.++.++.+.+ +.+.|+.+|+++++. .+..+.+|
T Consensus 286 ~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~------~~~~~~~~ 357 (493)
T 2uy1_A 286 DLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLK------HPDSTLLK 357 (493)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH------CTTCHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHH-HC-CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH------CCCCHHHH
T ss_conf 899999999998717889999999986-27-78885999999999998789968999999999987------89978999
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH
Q ss_conf 99999997520998999999999996099919999999999998199871336999999865039863336892409999
Q 001481 437 VQFSRLTYTTTGSADNARDILIDGIKHVPNCKLLLEELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDI 516 (1071)
Q Consensus 437 i~~A~~l~~~~g~~e~Ar~i~e~aL~~~p~~~~lw~~y~~le~~~g~~~~a~~~r~llekAl~~~~d~~~~l~~~~~~~l 516 (1071)
+.|+.++. ..|+.++||.+|+++ ..+..+|..|++||..+|+.+.+ |+++++++....+ -..+++..+
T Consensus 358 ~~yid~e~-~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~---r~v~~~~~~~~~~----~~~~~~~~~ 425 (493)
T 2uy1_A 358 EEFFLFLL-RIGDEENARALFKRL----EKTSRMWDSMIEYEFMVGSMELF---RELVDQKMDAIKA----DAILPPLPP 425 (493)
T ss_dssp HHHHHHHH-HHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHH---HHHHHHHHHHHHT----TCCBCCCCC
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHH---HHHHHHHHHHHCC----CCCCCCCCC
T ss_conf 99999998-759877799999999----98999999999999977999999---9999999998455----545786542
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 99999999994199999999999999829997
Q 001481 517 SSLYLQQFLDLCGTIHDIRNAWNQHIKLFPHT 548 (1071)
Q Consensus 517 w~~~l~~~e~~~G~~~~a~~~~~ra~~~~p~~ 548 (1071)
...|+ +||+.+|+++.+..-|.- +.+.|++
T Consensus 426 ~~~~~-~fe~~~g~l~~~~~~~~~-~~~~~~~ 455 (493)
T 2uy1_A 426 REHNV-QMEGILGRYHCFLDSFNF-LDLKIRD 455 (493)
T ss_dssp C--CC-CCCHHHHHHHHHHHHHCB-TTBCCCC
T ss_pred CCCHH-HHHHHHHHHHHHHHHHHH-HCCCCCC
T ss_conf 20089-999875049999888642-0031588
No 7
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=1.00 E-value=1 Score=238.60 Aligned_cols=350 Identities=12% Similarity=0.104 Sum_probs=195.1
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCC
Q ss_conf 79999994999999999999999920999189999999999998999989999999999980998899999999999448
Q 001481 25 GLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSAT 104 (1071)
Q Consensus 25 ~le~~i~~nP~d~~~W~~li~~~~~~~~~~~~~a~~iyeral~~~P~s~~lW~~ya~~e~~~~~~e~A~~lferAL~~~P 104 (1071)
.+++.++.+|.+...|..++..+... ++++++...+++++..+|.+...|..++..+...+++++|...|++++...|
T Consensus 21 ~~~~~~~~~p~~~~~~~~l~~~~~~~--~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 98 (388)
T 1w3b_A 21 HCMQLWRQEPDNTGVLLLLSSIHFQC--RRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKP 98 (388)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC
T ss_conf 99999984978899999999999986--8999999999999761978669999999999877999999999999987496
Q ss_pred CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 99999999999998307991589999999999609888846899999999998257799999999986168946899999
Q 001481 105 YSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYD 184 (1071)
Q Consensus 105 ~s~~lW~~y~~~~~~~~~~~e~ar~v~erAL~~~~~~~~s~~lW~~yi~fe~~~~~~~~~~~iy~ral~~p~~~~~~~~~ 184 (1071)
.+.+.|..++..+... +++++|...|++++...|. ...+|.....+....+.++.+..+|.+++.
T Consensus 99 ~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~----------- 163 (388)
T 1w3b_A 99 DFIDGYINLAAALVAA-GDMEGAVQAYVSALQYNPD---LYCVRSDLGNLLKALGRLEEAKACYLKAIE----------- 163 (388)
T ss_dssp TCHHHHHHHHHHHHHH-SCSSHHHHHHHHHHHHCTT---CTHHHHHHHHHHHTTSCHHHHHHHHHHHHH-----------
T ss_pred CHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----------
T ss_conf 5399999999999985-8999999999999975989---689999999999984689999999999987-----------
Q ss_pred HHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999986788654200146889998742177667756301257776322863357877988899998899999999999
Q 001481 185 SFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLD 264 (1071)
Q Consensus 185 ~~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~i~~~~d~~~~~~~a~~l~~~~~~~~~~y~~a~~~~ 264 (1071)
T Consensus 164 -------------------------------------------------------------------------------- 163 (388)
T 1w3b_A 164 -------------------------------------------------------------------------------- 163 (388)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHH
Q ss_conf 99999998721357678989946799799999999870997799999998504799989999999999995089779999
Q 001481 265 EKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASY 344 (1071)
Q Consensus 265 ~~~~~fE~ai~~~~~~~~~l~p~~~~~W~~yi~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~eeA~~ 344 (1071)
..|+....|..++..+...|+++.++..|++++...|....+|..++..+...|++++|..
T Consensus 164 -------------------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~ 224 (388)
T 1w3b_A 164 -------------------TQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVA 224 (388)
T ss_dssp -------------------HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHH
T ss_pred -------------------HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHH
T ss_conf -------------------2989789999999999985999999999999985598867999999999998578999999
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 99999997511241899999999999199899999999876323812299999999999981999999999999999986
Q 001481 345 ALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAA 424 (1071)
Q Consensus 345 il~rAl~~~~~~~p~i~~~~a~~e~~~g~~e~A~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~~yekAl~~~~ 424 (1071)
.|++++.. .|..+.+|...+..+...|++++|...|.+++ ...|....+|..++.++.+.|++++|+.+|+++++.
T Consensus 225 ~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-- 300 (388)
T 1w3b_A 225 AYLRALSL-SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAI-ELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-- 300 (388)
T ss_dssp HHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--
T ss_conf 99999852-96878999999999998688999999999998-649998899999999999869979999999999864--
Q ss_pred HHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 310478839999999999975209989999999999960999199999999999981998713369999998650398
Q 001481 425 EQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLLLEELIKFTMVHGGRSHISIVDAVISNALYSRP 502 (1071)
Q Consensus 425 ~~~~~~~~~~l~i~~A~~l~~~~g~~e~Ar~i~e~aL~~~p~~~~lw~~y~~le~~~g~~~~a~~~r~llekAl~~~~ 502 (1071)
.|..+.+|..+|.++. ..|++++|...|+++++..|++...|..++......|+.+++. ..|++++...|
T Consensus 301 ----~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~---~~~~~a~~~~p 370 (388)
T 1w3b_A 301 ----CPTHADSLNNLANIKR-EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEAL---MHYKEAIRISP 370 (388)
T ss_dssp ----CTTCHHHHHHHHHHHH-TTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHH---HHHHHHHTTCT
T ss_pred ----CCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHH---HHHHHHHHHCC
T ss_conf ----9444999999999999-8489999999999998609873999977999999868889999---99999986199
No 8
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=1.00 E-value=1 Score=234.52 Aligned_cols=369 Identities=13% Similarity=0.104 Sum_probs=318.6
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 99999209991899999999999989999899999999999809988999999999994489999999999999830799
Q 001481 44 LSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFED 123 (1071)
Q Consensus 44 i~~~~~~~~~~~~~a~~iyeral~~~P~s~~lW~~ya~~e~~~~~~e~A~~lferAL~~~P~s~~lW~~y~~~~~~~~~~ 123 (1071)
+..+... |+++++...|++++...|.+...|..++......++++++...+++++...|.+...|..++..+... ++
T Consensus 6 a~~~~~~--g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~-g~ 82 (388)
T 1w3b_A 6 AHREYQA--GDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKER-GQ 82 (388)
T ss_dssp HHHHHHH--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-TC
T ss_pred HHHHHHC--CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC-CC
T ss_conf 9999877--99999999999999849788999999999999868999999999999761978669999999999877-99
Q ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCHH
Q ss_conf 15899999999996098888468999999999982577999999999861689468999999999998678865420014
Q 001481 124 PNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDS 203 (1071)
Q Consensus 124 ~e~ar~v~erAL~~~~~~~~s~~lW~~yi~fe~~~~~~~~~~~iy~ral~~p~~~~~~~~~~~~~~~~~~~e~l~~~~~~ 203 (1071)
+++|...|++++...|.. ...|...+......++++.+...|.+++.
T Consensus 83 ~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~------------------------------ 129 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDF---IDGYINLAAALVAAGDMEGAVQAYVSALQ------------------------------ 129 (388)
T ss_dssp HHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHSCSSHHHHHHHHHHH------------------------------
T ss_pred HHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHCCCHHHHHHHHHHHHH------------------------------
T ss_conf 999999999998749653---99999999999985899999999999997------------------------------
Q ss_pred HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 68899987421776677563012577763228633578779888999988999999999999999999872135767898
Q 001481 204 AMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKP 283 (1071)
Q Consensus 204 ~~~~~~~~~~~~~l~~~~~~~e~~~~i~~~~d~~~~~~~a~~l~~~~~~~~~~y~~a~~~~~~~~~fE~ai~~~~~~~~~ 283 (1071)
T Consensus 130 -------------------------------------------------------------------------------- 129 (388)
T 1w3b_A 130 -------------------------------------------------------------------------------- 129 (388)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 99467997999999998709977999999985047999899999999999950897799999999999751124189999
Q 001481 284 LDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLF 363 (1071)
Q Consensus 284 l~p~~~~~W~~yi~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~eeA~~il~rAl~~~~~~~p~i~~~ 363 (1071)
.+|+....|..++.++...|++++++.+|++++...|.....|..++..+...|++++|...|++++.. .|..+..|..
T Consensus 130 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~ 208 (388)
T 1w3b_A 130 YNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL-DPNFLDAYIN 208 (388)
T ss_dssp HCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-CTTCHHHHHH
T ss_pred HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC-CCCCHHHHHH
T ss_conf 598968999999999998468999999999998729897899999999999859999999999999855-9886799999
Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 99999991998999999998763238122999999999999819999999999999999863104788399999999999
Q 001481 364 NARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLT 443 (1071)
Q Consensus 364 ~a~~e~~~g~~e~A~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~~yekAl~~~~~~~~~~~~~~l~i~~A~~l 443 (1071)
.+.++...|++++|...|.+++ .+.|+...+|..++.+..+.|++++|+..|+++++. .|..+.+|..+|.++
T Consensus 209 lg~~~~~~~~~~~A~~~~~~al-~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~l~~~~ 281 (388)
T 1w3b_A 209 LGNVLKEARIFDRAVAAYLRAL-SLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL------QPHFPDAYCNLANAL 281 (388)
T ss_dssp HHHHHHTTTCTTHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT------CSSCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH------CCCCHHHHHHHHHHH
T ss_conf 9999998578999999999998-529687899999999999868899999999999864------999889999999999
Q ss_pred HHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 75209989999999999960999199999999999981998713369999998650398633368924099999999999
Q 001481 444 YTTTGSADNARDILIDGIKHVPNCKLLLEELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQQ 523 (1071)
Q Consensus 444 ~~~~g~~e~Ar~i~e~aL~~~p~~~~lw~~y~~le~~~g~~~~a~~~r~llekAl~~~~d~~~~l~~~~~~~lw~~~l~~ 523 (1071)
. ..|++++|..+|+++++.+|.+...|..++.+....|+.+.+. ..|++++...|+ ....|...+ .
T Consensus 282 ~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~---~~~~~al~~~p~---------~~~~~~~l~-~ 347 (388)
T 1w3b_A 282 K-EKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAV---RLYRKALEVFPE---------FAAAHSNLA-S 347 (388)
T ss_dssp H-HHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHH---HHHHHHTTSCTT---------CHHHHHHHH-H
T ss_pred H-HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHH---HHHHHHHHCCCC---------CHHHHHHHH-H
T ss_conf 9-8699799999999998649444999999999999848999999---999999860987---------399997799-9
Q ss_pred HHHHCCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 999419999999999999982999755
Q 001481 524 FLDLCGTIHDIRNAWNQHIKLFPHTVR 550 (1071)
Q Consensus 524 ~e~~~G~~~~a~~~~~ra~~~~p~~~~ 550 (1071)
.....|+.+.+...+++++++.|+...
T Consensus 348 ~~~~~g~~~~A~~~~~~a~~~~p~~~~ 374 (388)
T 1w3b_A 348 VLQQQGKLQEALMHYKEAIRISPTFAD 374 (388)
T ss_dssp HHHTTTCCHHHHHHHHHHHTTCTTCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCCHH
T ss_conf 999868889999999999861999789
No 9
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=232.91 Aligned_cols=470 Identities=9% Similarity=-0.005 Sum_probs=277.7
Q ss_pred HHHCC-CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHH
Q ss_conf 99499-99999999999999209991899999999999989999899999999999809988999999999994489999
Q 001481 30 IAEGS-LDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVD 108 (1071)
Q Consensus 30 i~~nP-~d~~~W~~li~~~~~~~~~~~~~a~~iyeral~~~P~s~~lW~~ya~~e~~~~~~e~A~~lferAL~~~P~s~~ 108 (1071)
....| .++..|..++..+... ++++++..+|++++...|+. ..|..++..+...+++++|..+|++++.. +.++.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~--g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~ 151 (597)
T 2xpi_A 76 QNTDSLSREDYLRLWRHDALMQ--QQYKCAAFVGEKVLDITGNP-NDAFWLAQVYCCTGDYARAKCLLTKEDLY-NRSSA 151 (597)
T ss_dssp ------CHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHTTCHHHHHHHHHHTCGG-GTCHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHCCCHHHHHHHHHHHHCC-CCCHH
T ss_conf 4663378999999999999874--58347999999999608993-57999999999747699999999987335-45650
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC----------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 999999999830799158999999999960988----------------8846899999999998257799999999986
Q 001481 109 VWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKD----------------YLCHTMWDKYIEFEISQQRWSSLAQIFVQTL 172 (1071)
Q Consensus 109 lW~~y~~~~~~~~~~~e~ar~v~erAL~~~~~~----------------~~s~~lW~~yi~fe~~~~~~~~~~~iy~ral 172 (1071)
.|..++..+... +++++|..+|++. .+.. ......|...+......++++.++.+|++++
T Consensus 152 ~~~~l~~~~~~~-g~~~~A~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 227 (597)
T 2xpi_A 152 CRYLAAFCLVKL-YDWQGALNLLGET---NPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEAL 227 (597)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHCSS---CTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHCC---CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 899999999988-6699999998424---886322323433432112351258999998899998399899999999999
Q ss_pred CCCCCCHHHHHHHHHHHH---HHHH----HHHHHH----CHH-HHHHHHHHHHCCCCCCCCCCCH---HHHHHHHHCCCC
Q ss_conf 168946899999999999---8678----865420----014-6889998742177667756301---257776322863
Q 001481 173 RFPSKKLHHYYDSFKKLA---GAWK----EELECE----SDS-AMEFQSELVLEGEVPAYYKDDE---TSSVIKDLLDPS 237 (1071)
Q Consensus 173 ~~p~~~~~~~~~~~~~~~---~~~~----e~l~~~----~~~-~~~~~~~~~~~~~l~~~~~~~e---~~~~i~~~~d~~ 237 (1071)
........ .|....... +... ..+... .+. ....++..+.. .+....+ ....+....+..
T Consensus 228 ~~~p~~~~-~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~g~~~~A~~~~~~~~~~~ 302 (597)
T 2xpi_A 228 MVDAKCYE-AFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLN----KTSHEDELRRAEDYLSSINGLE 302 (597)
T ss_dssp HHCTTCHH-HHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSC----TTTTHHHHHHHHHHHHTSTTGG
T ss_pred HHCCHHHH-HHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH----HHCCCCHHHHHHHHHHHHHCCC
T ss_conf 72932569-999999850346156789998657742344308899999999999----9807313999999998764388
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHC
Q ss_conf 35787798889999889999999999999999998721357678989946799799999999870997799999998504
Q 001481 238 VDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLI 317 (1071)
Q Consensus 238 ~~~~~a~~l~~~~~~~~~~y~~a~~~~~~~~~fE~ai~~~~~~~~~l~p~~~~~W~~yi~~~~~~g~~~~a~~~yerAL~ 317 (1071)
.. ...+......|.+......++..|++.++. .|.+...|..++..+...|+.++++.+|++++.
T Consensus 303 ~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 367 (597)
T 2xpi_A 303 KS-------SDLLLCKADTLFVRSRFIDVLAITTKILEI--------DPYNLDVYPLHLASLHESGEKNKLYLISNDLVD 367 (597)
T ss_dssp GC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CH-------HHHHHHHHHHHHHHCCHHHHHHHHHHHHHC--------CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 30-------999999999999846899999999999972--------955379999999999982777799999999985
Q ss_pred CCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 79998999999999999508977999999999997511241899999999999199899999999876323812299999
Q 001481 318 PCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVT 397 (1071)
Q Consensus 318 ~~p~~~~lW~~ya~~l~~~g~~eeA~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~e~A~~~~~~al~~~~p~~~~~w~ 397 (1071)
..|....+|..++..+...|++++|..+|++++.. .+.....|...+..+...|++++|..+|.+++ ...|....+|.
T Consensus 368 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~ 445 (597)
T 2xpi_A 368 RHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM-DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAA-RLFQGTHLPYL 445 (597)
T ss_dssp HCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HTTTTCSHHHH
T ss_pred HCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHCCCCHHHHH
T ss_conf 18354799999999999835699999999999872-97778999999999997577799999999999-86813438999
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH------CCCH-HHH
Q ss_conf 999999981999999999999999986310478839999999999975209989999999999960------9991-999
Q 001481 398 FKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKH------VPNC-KLL 470 (1071)
Q Consensus 398 ~~a~le~~~g~~~~A~~~yekAl~~~~~~~~~~~~~~l~i~~A~~l~~~~g~~e~Ar~i~e~aL~~------~p~~-~~l 470 (1071)
.++.++.+.|++++|+.+|+++++. .|.++.+|..+|.++. ..|++++|.++|+++++. .|.. ..+
T Consensus 446 ~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~ 518 (597)
T 2xpi_A 446 FLGMQHMQLGNILLANEYLQSSYAL------FQYDPLLLNELGVVAF-NKSDMQTAINHFQNALLLVKKTQSNEKPWAAT 518 (597)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH------CCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHH------CCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 9999999857999999999999984------8887679999999999-81899999999999998532345453549999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 9999999998199871336999999865039863336892409999999999999941999999999999998299975
Q 001481 471 LEELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQQFLDLCGTIHDIRNAWNQHIKLFPHTV 549 (1071)
Q Consensus 471 w~~y~~le~~~g~~~~a~~~r~llekAl~~~~d~~~~l~~~~~~~lw~~~l~~~e~~~G~~~~a~~~~~ra~~~~p~~~ 549 (1071)
|..++......|+.+.+. .+|++++...|+ ....|...+ ......|+.+.+..++++++++.|+..
T Consensus 519 ~~~l~~~~~~~g~~~~A~---~~~~~~~~~~p~---------~~~~~~~l~-~~~~~~g~~~~A~~~~~~~l~~~p~~~ 584 (597)
T 2xpi_A 519 WANLGHAYRKLKMYDAAI---DALNQGLLLSTN---------DANVHTAIA-LVYLHKKIPGLAITHLHESLAISPNEI 584 (597)
T ss_dssp HHHHHHHHHHTTCHHHHH---HHHHHHHHHSSC---------CHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHCCHHHHH---HHHHHHHHHCCC---------CHHHHHHHH-HHHHHHCCHHHHHHHHHHHHHCCCCCH
T ss_conf 999999999804799999---999999973899---------738999999-999981789999999999972088874
No 10
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=1.00 E-value=1 Score=228.26 Aligned_cols=268 Identities=18% Similarity=0.244 Sum_probs=229.7
Q ss_pred CHHHHHHHHHHHHHHHHH----CCH----HHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-------HCCH-------HHH
Q ss_conf 946799799999999870----997----799999998504799989999999999995-------0897-------799
Q 001481 285 DDIQLKNWHDYLSFAEKQ----GDF----DWVVKLYERCLIPCADYPEFWMRYVDFMES-------KGGR-------EIA 342 (1071)
Q Consensus 285 ~p~~~~~W~~yi~~~~~~----g~~----~~a~~~yerAL~~~p~~~~lW~~ya~~l~~-------~g~~-------eeA 342 (1071)
++....+|..|+.|+++. ++. ++|+.+|++|+..+|.++++|+.|+.++.. .|++ ++|
T Consensus 4 ~~~~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A 83 (308)
T 2ond_A 4 EAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEA 83 (308)
T ss_dssp HHHHHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCHHHHHCCCHHHCCCCHHHH
T ss_conf 79999999999999874966688558999999999999998768987999999999987353433125400000016999
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHH-HHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 9999999997511241899999999999199899999999876323812299-999999999981999999999999999
Q 001481 343 SYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIE-KVTFKANMERRLGNFVAACDTYKEALE 421 (1071)
Q Consensus 343 ~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~e~A~~~~~~al~~~~p~~~~-~w~~~a~le~~~g~~~~A~~~yekAl~ 421 (1071)
+.+|+||+....|..+.+|+.++.++...|++++|+.+|++++ .+.|.... +|+.++.++.+.|++++|+.+|++|++
T Consensus 84 ~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al-~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 162 (308)
T 2ond_A 84 ANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLL-AIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE 162 (308)
T ss_dssp HHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-TSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 9999999998595247999998999885589999999999998-153667358999999999984488999999999985
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 98631047883999999999997520998999999999996099919999999999998199871336999999865039
Q 001481 422 TAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLLLEELIKFTMVHGGRSHISIVDAVISNALYSR 501 (1071)
Q Consensus 422 ~~~~~~~~~~~~~l~i~~A~~l~~~~g~~e~Ar~i~e~aL~~~p~~~~lw~~y~~le~~~g~~~~a~~~r~llekAl~~~ 501 (1071)
. .|..+.+|+.++.+++...|++++|+++|++|++.+|++..+|..|+.++...|+.+++ +.+|++|+..+
T Consensus 163 ~------~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A---~~~~~~al~~~ 233 (308)
T 2ond_A 163 D------ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNT---RVLFERVLTSG 233 (308)
T ss_dssp S------TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHH---HHHHHHHHHSS
T ss_pred C------CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHH---HHHHHHHHHCC
T ss_conf 6------89887999999999998759979999999999876788299999999999988998999---99999997456
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHCCC
Q ss_conf 863336892409999999999999941999999999999998299975554557763203356664124403443079
Q 001481 502 PDVLKVFSLEDVEDISSLYLQQFLDLCGTIHDIRNAWNQHIKLFPHTVRTAYECPGRETKSLRAFIRGKRESNVASLP 579 (1071)
Q Consensus 502 ~d~~~~l~~~~~~~lw~~~l~~~e~~~G~~~~a~~~~~ra~~~~p~~~~~~~~~~~~k~~~~~~~~~~~r~~~i~~lp 579 (1071)
.++++....+|..|+ .|+...|+.+.+..++.|+++.+|++..... . . ...+|..++...|
T Consensus 234 -----~l~p~~~~~l~~~~~-~~~~~~g~~~~a~~~~~~a~~~~p~~~~~~~---------~-~-~~~~r~~~l~~~P 294 (308)
T 2ond_A 234 -----SLPPEKSGEIWARFL-AFESNIGDLASILKVEKRRFTAFREEYEGKE---------T-A-LLVDRYKFMDLYP 294 (308)
T ss_dssp -----SSCGGGCHHHHHHHH-HHHHHHSCHHHHHHHHHHHHHHTTTTTSSCH---------H-H-HHHTTTCBTTBCS
T ss_pred -----CCCHHHHHHHHHHHH-HHHHHCCCHHHHHHHHHHHHHHCCCCCCCCH---------H-H-HHHHHHHHCCCCC
T ss_conf -----899899999999999-9999849989999999999987653025625---------8-8-9988988616689
Done!