Query 001482
Match_columns 1070
No_of_seqs 531 out of 2979
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 01:56:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001482.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001482hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02263 GBP: Guanylate-bindin 100.0 1.5E-61 3.2E-66 527.8 17.0 258 51-313 1-259 (260)
2 cd01851 GBP Guanylate-binding 100.0 2.8E-42 6E-47 368.3 19.1 219 66-307 2-223 (224)
3 KOG2037 Guanylate-binding prot 100.0 1.9E-39 4.1E-44 373.3 26.0 381 44-433 6-447 (552)
4 PF02841 GBP_C: Guanylate-bind 100.0 1.3E-27 2.9E-32 266.0 35.5 177 315-496 1-184 (297)
5 KOG2203 GTP-binding protein [G 100.0 2.9E-27 6.3E-32 261.3 32.4 306 39-400 3-343 (772)
6 PF05879 RHD3: Root hair defec 100.0 1.4E-26 3.1E-31 284.3 39.8 358 77-477 1-387 (742)
7 TIGR00606 rad50 rad50. This fa 99.7 8E-12 1.7E-16 166.0 70.9 411 456-886 631-1087(1311)
8 KOG0161 Myosin class II heavy 99.7 1E-10 2.2E-15 152.3 74.6 357 505-862 1112-1535(1930)
9 KOG0161 Myosin class II heavy 99.7 9.3E-10 2E-14 143.5 75.7 226 714-940 1274-1514(1930)
10 KOG2037 Guanylate-binding prot 99.7 1.3E-17 2.9E-22 193.1 3.5 175 38-221 29-228 (552)
11 KOG0996 Structural maintenance 99.7 2.9E-08 6.2E-13 120.7 82.1 59 53-114 83-167 (1293)
12 TIGR02168 SMC_prok_B chromosom 99.6 4.4E-08 9.6E-13 131.4 89.5 23 73-95 25-50 (1179)
13 TIGR00606 rad50 rad50. This fa 99.6 3.1E-08 6.7E-13 132.2 85.0 21 72-92 29-49 (1311)
14 PRK02224 chromosome segregatio 99.6 6.7E-09 1.5E-13 134.5 70.4 21 72-92 24-44 (880)
15 PRK02224 chromosome segregatio 99.5 1.9E-08 4.1E-13 130.3 65.4 70 868-939 573-642 (880)
16 TIGR02168 SMC_prok_B chromosom 99.4 2.8E-06 6.1E-11 114.2 78.7 13 142-154 35-47 (1179)
17 PRK03918 chromosome segregatio 99.4 5.6E-07 1.2E-11 116.9 68.7 21 72-92 24-44 (880)
18 TIGR02169 SMC_prok_A chromosom 99.4 1E-05 2.2E-10 108.6 81.0 21 72-92 24-44 (1164)
19 KOG4674 Uncharacterized conser 99.4 9.5E-06 2.1E-10 105.1 72.5 178 513-690 800-988 (1822)
20 PF10174 Cast: RIM-binding pro 99.4 4.5E-06 9.8E-11 102.5 65.5 26 896-921 514-539 (775)
21 PF01576 Myosin_tail_1: Myosin 99.4 1.1E-13 2.4E-18 174.1 0.0 430 493-941 240-738 (859)
22 COG1196 Smc Chromosome segrega 99.3 3.4E-05 7.3E-10 102.3 78.4 21 72-92 25-45 (1163)
23 COG1196 Smc Chromosome segrega 99.3 2.9E-05 6.2E-10 102.9 74.0 47 898-944 958-1004(1163)
24 PF01576 Myosin_tail_1: Myosin 99.3 5.7E-13 1.2E-17 167.7 0.0 364 557-929 159-558 (859)
25 KOG4674 Uncharacterized conser 99.2 6.1E-05 1.3E-09 97.9 71.6 20 432-451 798-817 (1822)
26 PRK01156 chromosome segregatio 99.2 6.7E-05 1.5E-09 97.5 71.6 21 72-92 24-44 (895)
27 PF12128 DUF3584: Protein of u 99.2 9.7E-05 2.1E-09 98.0 73.7 19 74-92 20-38 (1201)
28 PF10174 Cast: RIM-binding pro 99.2 2.9E-05 6.3E-10 95.6 62.2 39 919-957 564-602 (775)
29 PF05701 WEMBL: Weak chloropla 99.2 1.6E-05 3.6E-10 95.7 58.5 49 517-569 33-81 (522)
30 TIGR02169 SMC_prok_A chromosom 99.2 1.2E-06 2.6E-11 117.6 53.9 28 573-600 165-192 (1164)
31 PRK01156 chromosome segregatio 99.2 0.00012 2.5E-09 95.3 70.7 8 461-468 163-170 (895)
32 KOG0962 DNA repair protein RAD 99.2 9.1E-05 2E-09 93.5 64.3 84 455-538 629-718 (1294)
33 PF12128 DUF3584: Protein of u 99.2 0.00017 3.8E-09 95.7 70.8 47 298-351 143-191 (1201)
34 PF00038 Filament: Intermediat 99.2 9.5E-07 2.1E-11 100.2 43.3 186 505-704 5-192 (312)
35 KOG0976 Rho/Rac1-interacting s 99.1 6.8E-05 1.5E-09 87.9 62.7 117 547-663 89-208 (1265)
36 KOG0996 Structural maintenance 99.1 0.00013 2.8E-09 89.9 74.8 40 502-541 389-428 (1293)
37 KOG0250 DNA repair protein RAD 99.1 0.00016 3.4E-09 89.3 66.6 35 459-493 157-194 (1074)
38 PF05701 WEMBL: Weak chloropla 99.0 0.0002 4.3E-09 86.4 63.2 38 569-606 114-151 (522)
39 PF07888 CALCOCO1: Calcium bin 99.0 3.9E-05 8.5E-10 89.6 49.7 36 204-241 27-62 (546)
40 KOG4181 Uncharacterized conser 99.0 2.5E-09 5.5E-14 114.3 13.2 88 39-141 161-260 (491)
41 KOG0977 Nuclear envelope prote 99.0 2.6E-06 5.7E-11 99.2 38.8 99 504-602 42-144 (546)
42 PF07888 CALCOCO1: Calcium bin 99.0 8.8E-05 1.9E-09 86.8 49.5 43 901-943 415-457 (546)
43 KOG0976 Rho/Rac1-interacting s 99.0 0.00032 7E-09 82.5 60.2 42 914-955 480-521 (1265)
44 PRK04863 mukB cell division pr 98.9 0.0017 3.6E-08 86.3 91.4 24 72-95 28-51 (1486)
45 PRK04778 septation ring format 98.9 0.00076 1.6E-08 82.6 55.8 110 831-941 382-507 (569)
46 PF00261 Tropomyosin: Tropomyo 98.8 7.4E-06 1.6E-10 88.6 30.4 52 835-886 137-188 (237)
47 KOG0977 Nuclear envelope prote 98.8 2.4E-05 5.2E-10 91.3 36.1 182 494-705 90-273 (546)
48 KOG4673 Transcription factor T 98.8 0.0013 2.8E-08 76.6 53.1 37 907-943 715-751 (961)
49 KOG0964 Structural maintenance 98.7 0.0022 4.7E-08 77.9 65.2 32 1026-1059 946-977 (1200)
50 KOG0964 Structural maintenance 98.7 0.0022 4.8E-08 77.8 60.9 51 707-757 447-497 (1200)
51 KOG0250 DNA repair protein RAD 98.7 0.0029 6.4E-08 78.5 71.6 22 69-92 62-83 (1074)
52 PRK04863 mukB cell division pr 98.7 0.0043 9.4E-08 82.6 57.7 34 443-476 212-245 (1486)
53 PF06160 EzrA: Septation ring 98.7 0.0031 6.6E-08 77.0 60.3 134 828-967 375-512 (560)
54 PF05483 SCP-1: Synaptonemal c 98.7 0.0024 5.2E-08 75.0 78.2 54 901-954 620-677 (786)
55 KOG0994 Extracellular matrix g 98.6 0.0048 1E-07 75.7 59.8 50 554-603 1236-1285(1758)
56 KOG0971 Microtubule-associated 98.6 0.0032 6.8E-08 75.6 46.4 7 108-114 32-38 (1243)
57 PRK04778 septation ring format 98.6 0.0051 1.1E-07 75.5 57.8 14 438-451 28-41 (569)
58 PF00261 Tropomyosin: Tropomyo 98.6 7.2E-05 1.6E-09 81.0 30.2 90 864-954 138-227 (237)
59 KOG0971 Microtubule-associated 98.6 0.0023 4.9E-08 76.8 44.1 19 516-534 229-247 (1243)
60 PF00038 Filament: Intermediat 98.5 0.0026 5.7E-08 72.2 42.9 41 734-774 96-136 (312)
61 KOG4643 Uncharacterized coiled 98.5 0.0074 1.6E-07 73.7 55.6 21 562-582 175-195 (1195)
62 KOG0612 Rho-associated, coiled 98.5 0.011 2.4E-07 73.9 49.0 40 53-92 69-109 (1317)
63 KOG0994 Extracellular matrix g 98.4 0.019 4.2E-07 70.7 57.5 105 713-821 1511-1615(1758)
64 KOG4643 Uncharacterized coiled 98.3 0.028 6E-07 68.9 61.0 28 761-788 407-434 (1195)
65 PF05483 SCP-1: Synaptonemal c 98.3 0.022 4.8E-07 67.2 75.5 40 733-772 512-551 (786)
66 KOG0612 Rho-associated, coiled 98.3 0.038 8.3E-07 69.4 50.6 11 362-372 286-296 (1317)
67 KOG0933 Structural maintenance 98.3 0.032 7E-07 68.5 70.3 25 1019-1043 948-972 (1174)
68 PF09726 Macoilin: Transmembra 98.2 0.00096 2.1E-08 82.2 30.8 66 892-957 590-655 (697)
69 KOG0933 Structural maintenance 98.2 0.044 9.5E-07 67.4 71.5 65 561-629 403-467 (1174)
70 KOG1029 Endocytic adaptor prot 98.2 0.03 6.4E-07 66.6 40.0 69 693-761 424-492 (1118)
71 COG1159 Era GTPase [General fu 98.2 2.2E-06 4.9E-11 92.3 6.1 58 69-139 4-65 (298)
72 KOG1029 Endocytic adaptor prot 98.1 0.047 1E-06 65.0 40.0 8 149-156 52-59 (1118)
73 PF06160 EzrA: Septation ring 98.1 0.062 1.3E-06 65.8 58.0 33 925-957 445-477 (560)
74 KOG0018 Structural maintenance 98.0 0.092 2E-06 65.3 59.0 20 73-92 27-46 (1141)
75 KOG4673 Transcription factor T 98.0 0.066 1.4E-06 63.0 62.2 19 916-934 903-921 (961)
76 PF05557 MAD: Mitotic checkpoi 98.0 2.4E-06 5.1E-11 107.6 2.9 27 915-941 508-534 (722)
77 PHA02562 46 endonuclease subun 98.0 0.0024 5.2E-08 78.8 29.1 22 71-92 27-48 (562)
78 KOG0995 Centromere-associated 97.9 0.085 1.8E-06 61.7 50.4 96 557-652 273-374 (581)
79 PF01926 MMR_HSR1: 50S ribosom 97.9 1.8E-05 3.8E-10 75.7 6.5 59 74-141 2-60 (116)
80 PF04548 AIG1: AIG1 family; I 97.9 3.2E-05 7E-10 82.5 9.0 102 74-184 3-110 (212)
81 cd01852 AIG1 AIG1 (avrRpt2-ind 97.9 5E-05 1.1E-09 80.0 10.4 58 74-143 3-64 (196)
82 PF09726 Macoilin: Transmembra 97.9 0.014 2.9E-07 72.3 32.7 7 586-592 461-467 (697)
83 PF05622 HOOK: HOOK protein; 97.9 1.2E-05 2.7E-10 100.9 6.7 22 352-373 68-90 (713)
84 PF09728 Taxilin: Myosin-like 97.9 0.077 1.7E-06 59.6 43.5 37 566-602 24-60 (309)
85 KOG0946 ER-Golgi vesicle-tethe 97.9 0.024 5.1E-07 68.1 32.1 11 105-115 105-115 (970)
86 cd01853 Toc34_like Toc34-like 97.9 0.00011 2.4E-09 80.0 12.5 65 68-141 28-92 (249)
87 PRK11637 AmiB activator; Provi 97.9 0.018 3.9E-07 68.3 32.0 69 699-767 47-115 (428)
88 PF05667 DUF812: Protein of un 97.8 0.13 2.7E-06 62.7 38.5 23 616-638 393-415 (594)
89 KOG0980 Actin-binding protein 97.8 0.13 2.8E-06 62.7 37.2 26 835-860 490-515 (980)
90 PF09728 Taxilin: Myosin-like 97.8 0.11 2.3E-06 58.5 45.3 54 723-776 212-265 (309)
91 KOG0963 Transcription factor/C 97.8 0.15 3.3E-06 60.2 47.3 48 1021-1068 484-532 (629)
92 TIGR00993 3a0901s04IAP86 chlor 97.8 0.00019 4.2E-09 85.4 13.4 63 72-143 119-181 (763)
93 KOG0962 DNA repair protein RAD 97.8 0.28 6.1E-06 63.1 56.1 89 69-165 27-120 (1294)
94 PF14915 CCDC144C: CCDC144C pr 97.8 0.089 1.9E-06 56.8 43.2 15 524-538 5-19 (305)
95 KOG0946 ER-Golgi vesicle-tethe 97.7 0.054 1.2E-06 65.2 31.6 53 555-607 662-714 (970)
96 PF05557 MAD: Mitotic checkpoi 97.7 1.5E-05 3.3E-10 100.4 3.0 32 616-647 170-201 (722)
97 KOG0018 Structural maintenance 97.7 0.31 6.6E-06 61.0 67.6 25 375-399 159-183 (1141)
98 COG4372 Uncharacterized protei 97.7 0.13 2.9E-06 56.7 34.3 71 725-795 107-177 (499)
99 COG0419 SbcC ATPase involved i 97.7 0.43 9.4E-06 62.3 71.8 22 71-92 25-46 (908)
100 KOG4593 Mitotic checkpoint pro 97.7 0.24 5.2E-06 59.3 59.5 44 563-606 125-168 (716)
101 KOG0963 Transcription factor/C 97.7 0.24 5.2E-06 58.6 50.3 45 900-944 394-438 (629)
102 PF00350 Dynamin_N: Dynamin fa 97.7 5.5E-05 1.2E-09 77.4 5.5 22 74-95 1-22 (168)
103 KOG1003 Actin filament-coating 97.7 0.059 1.3E-06 54.4 26.1 77 867-944 109-185 (205)
104 PF05622 HOOK: HOOK protein; 97.6 0.0001 2.3E-09 92.7 8.8 12 326-337 7-18 (713)
105 COG4942 Membrane-bound metallo 97.6 0.21 4.5E-06 57.3 33.7 14 999-1012 333-346 (420)
106 PF05667 DUF812: Protein of un 97.6 0.28 6.1E-06 59.8 37.1 35 742-776 492-526 (594)
107 PRK00089 era GTPase Era; Revie 97.6 0.00019 4E-09 80.8 9.4 60 70-141 4-66 (292)
108 KOG4593 Mitotic checkpoint pro 97.6 0.33 7.2E-06 58.1 61.7 25 913-937 555-579 (716)
109 KOG0995 Centromere-associated 97.6 0.32 6.9E-06 57.1 54.0 23 316-338 152-174 (581)
110 PF02421 FeoB_N: Ferrous iron 97.5 0.00013 2.8E-09 73.1 5.6 57 73-142 2-61 (156)
111 PF15070 GOLGA2L5: Putative go 97.5 0.54 1.2E-05 57.7 56.1 23 919-941 479-501 (617)
112 TIGR00436 era GTP-binding prot 97.5 0.00023 4.9E-09 79.0 7.2 56 72-140 1-60 (270)
113 PF15070 GOLGA2L5: Putative go 97.5 0.56 1.2E-05 57.5 55.9 14 1029-1042 573-586 (617)
114 COG1579 Zn-ribbon protein, pos 97.4 0.048 1E-06 58.0 23.8 69 728-796 53-123 (239)
115 TIGR03598 GTPase_YsxC ribosome 97.4 0.00062 1.3E-08 70.5 9.5 62 69-141 16-77 (179)
116 PF09730 BicD: Microtubule-ass 97.4 0.65 1.4E-05 57.3 50.1 84 561-648 31-114 (717)
117 cd04163 Era Era subfamily. Er 97.4 0.00046 1E-08 69.6 8.4 61 72-141 4-64 (168)
118 PF10220 DUF2146: Uncharacteri 97.4 0.14 3E-06 64.7 31.1 72 350-429 393-464 (895)
119 KOG0980 Actin-binding protein 97.4 0.66 1.4E-05 56.9 38.5 25 834-858 496-520 (980)
120 TIGR03185 DNA_S_dndD DNA sulfu 97.4 0.8 1.7E-05 57.5 41.2 22 71-92 28-49 (650)
121 COG1340 Uncharacterized archae 97.4 0.34 7.4E-06 52.9 40.0 50 557-606 34-83 (294)
122 cd01858 NGP_1 NGP-1. Autoanti 97.4 0.00024 5.2E-09 71.9 5.5 55 72-138 103-157 (157)
123 COG4942 Membrane-bound metallo 97.3 0.55 1.2E-05 53.9 33.2 24 918-941 225-248 (420)
124 PRK11281 hypothetical protein; 97.3 1.3 2.8E-05 58.0 41.5 21 568-588 84-104 (1113)
125 PF14662 CCDC155: Coiled-coil 97.3 0.28 6.1E-06 49.9 28.0 31 834-864 97-127 (193)
126 PF03193 DUF258: Protein of un 97.2 0.00016 3.5E-09 72.5 2.5 71 58-142 23-101 (161)
127 KOG1003 Actin filament-coating 97.2 0.3 6.6E-06 49.5 27.6 40 732-771 51-90 (205)
128 PF12718 Tropomyosin_1: Tropom 97.2 0.098 2.1E-06 51.8 21.7 56 730-785 83-138 (143)
129 KOG0999 Microtubule-associated 97.2 0.75 1.6E-05 53.3 49.2 53 831-883 317-369 (772)
130 PF14915 CCDC144C: CCDC144C pr 97.1 0.55 1.2E-05 51.0 44.6 54 833-886 208-261 (305)
131 TIGR00991 3a0901s02IAP34 GTP-b 97.1 0.0028 6E-08 70.3 10.7 74 59-141 23-99 (313)
132 COG1579 Zn-ribbon protein, pos 97.1 0.2 4.2E-06 53.5 23.9 8 978-985 205-212 (239)
133 cd01850 CDC_Septin CDC/Septin. 97.1 0.00077 1.7E-08 74.8 6.2 65 72-141 5-76 (276)
134 PF07111 HCR: Alpha helical co 97.1 1.2 2.6E-05 53.7 67.2 23 945-967 639-661 (739)
135 cd01849 YlqF_related_GTPase Yl 97.1 0.00085 1.8E-08 67.8 5.9 56 71-138 100-155 (155)
136 cd01878 HflX HflX subfamily. 97.1 0.0013 2.8E-08 69.7 7.5 63 68-139 38-100 (204)
137 cd04101 RabL4 RabL4 (Rab-like4 97.1 0.001 2.2E-08 67.5 6.4 60 74-138 3-62 (164)
138 cd01894 EngA1 EngA1 subfamily. 97.0 0.001 2.2E-08 66.7 6.0 58 75-141 1-58 (157)
139 cd04178 Nucleostemin_like Nucl 97.0 0.0011 2.5E-08 67.9 5.7 55 72-138 118-172 (172)
140 PF09787 Golgin_A5: Golgin sub 96.9 1.7 3.6E-05 52.8 37.5 42 914-955 389-430 (511)
141 PRK10929 putative mechanosensi 96.9 2.7 5.8E-05 55.0 43.8 6 839-844 340-345 (1109)
142 cd01898 Obg Obg subfamily. Th 96.9 0.003 6.5E-08 64.4 8.3 54 74-139 3-59 (170)
143 cd04104 p47_IIGP_like p47 (47- 96.9 0.0015 3.2E-08 68.9 6.0 22 74-95 4-25 (197)
144 cd04171 SelB SelB subfamily. 96.9 0.0026 5.7E-08 64.2 7.6 60 73-139 2-62 (164)
145 PF09755 DUF2046: Uncharacteri 96.9 1 2.2E-05 49.6 37.3 64 716-779 138-202 (310)
146 KOG1423 Ras-like GTPase ERA [C 96.9 0.0016 3.4E-08 70.2 6.0 61 69-141 70-133 (379)
147 TIGR03185 DNA_S_dndD DNA sulfu 96.9 2.2 4.8E-05 53.6 42.9 39 565-603 210-248 (650)
148 cd04142 RRP22 RRP22 subfamily. 96.9 0.0034 7.5E-08 66.2 8.6 60 74-141 3-62 (198)
149 cd00880 Era_like Era (E. coli 96.9 0.002 4.4E-08 64.0 6.4 59 76-142 1-59 (163)
150 cd01897 NOG NOG1 is a nucleola 96.8 0.0041 8.9E-08 63.3 8.6 57 73-139 2-58 (168)
151 PF07111 HCR: Alpha helical co 96.8 1.9 4.2E-05 52.0 67.0 64 739-802 378-441 (739)
152 PRK15494 era GTPase Era; Provi 96.8 0.0044 9.5E-08 71.0 9.5 57 69-139 50-111 (339)
153 COG4477 EzrA Negative regulato 96.8 1.7 3.6E-05 50.9 53.9 21 514-534 100-120 (570)
154 PRK12289 GTPase RsgA; Reviewed 96.8 0.0022 4.8E-08 73.3 6.7 60 73-143 174-239 (352)
155 COG5185 HEC1 Protein involved 96.8 1.5 3.3E-05 50.0 41.0 19 615-633 342-360 (622)
156 KOG0978 E3 ubiquitin ligase in 96.8 2.3 5E-05 52.1 67.7 35 909-943 558-592 (698)
157 cd04164 trmE TrmE (MnmE, ThdF, 96.7 0.0036 7.9E-08 62.5 7.3 60 73-141 3-62 (157)
158 COG1084 Predicted GTPase [Gene 96.7 0.0086 1.9E-07 65.8 10.4 102 54-166 148-255 (346)
159 cd01857 HSR1_MMR1 HSR1/MMR1. 96.7 0.0024 5.1E-08 63.4 5.7 55 73-139 85-139 (141)
160 PF10473 CENP-F_leu_zip: Leuci 96.7 0.48 1E-05 46.3 21.2 89 792-880 12-100 (140)
161 cd01890 LepA LepA subfamily. 96.7 0.0042 9E-08 64.0 7.6 67 74-140 3-79 (179)
162 TIGR02836 spore_IV_A stage IV 96.7 0.002 4.4E-08 72.9 5.5 74 68-142 15-105 (492)
163 TIGR00231 small_GTP small GTP- 96.7 0.0027 5.9E-08 63.0 6.0 57 74-138 4-60 (161)
164 PF14662 CCDC155: Coiled-coil 96.7 0.93 2E-05 46.2 28.6 25 694-718 31-55 (193)
165 PRK09563 rbgA GTPase YlqF; Rev 96.7 0.0041 8.9E-08 69.6 7.7 60 70-141 120-179 (287)
166 PF15066 CAGE1: Cancer-associa 96.7 1.8 3.9E-05 49.5 29.8 72 735-806 391-462 (527)
167 PF00009 GTP_EFTU: Elongation 96.6 0.0019 4E-08 67.5 4.4 103 69-181 1-118 (188)
168 COG3840 ThiQ ABC-type thiamine 96.6 0.002 4.4E-08 64.6 4.1 37 73-118 27-63 (231)
169 PRK09039 hypothetical protein; 96.6 0.54 1.2E-05 53.8 24.3 15 694-708 48-62 (343)
170 PRK12288 GTPase RsgA; Reviewed 96.6 0.0018 3.9E-08 74.0 4.3 59 73-142 207-271 (347)
171 cd01876 YihA_EngB The YihA (En 96.6 0.0033 7.1E-08 63.5 5.8 57 74-141 2-58 (170)
172 PRK12298 obgE GTPase CgtA; Rev 96.6 0.0032 6.9E-08 73.2 6.2 57 71-139 159-218 (390)
173 PF15619 Lebercilin: Ciliary p 96.6 1.2 2.7E-05 46.4 27.0 17 870-886 167-183 (194)
174 PRK00454 engB GTP-binding prot 96.6 0.0036 7.9E-08 65.5 6.1 59 70-139 23-81 (196)
175 cd01887 IF2_eIF5B IF2/eIF5B (i 96.6 0.0059 1.3E-07 62.0 7.5 60 73-139 2-61 (168)
176 COG4477 EzrA Negative regulato 96.5 2.5 5.4E-05 49.6 55.1 31 503-533 103-133 (570)
177 cd01861 Rab6 Rab6 subfamily. 96.5 0.0036 7.7E-08 63.2 5.6 57 74-138 3-59 (161)
178 PRK11058 GTPase HflX; Provisio 96.5 0.0064 1.4E-07 71.6 8.3 56 71-139 197-256 (426)
179 PF10473 CENP-F_leu_zip: Leuci 96.5 0.72 1.6E-05 45.1 20.9 36 789-824 51-86 (140)
180 PF08477 Miro: Miro-like prote 96.5 0.0092 2E-07 56.9 8.0 88 74-178 2-92 (119)
181 cd01855 YqeH YqeH. YqeH is an 96.5 0.0031 6.7E-08 66.0 4.8 55 73-138 129-190 (190)
182 cd01864 Rab19 Rab19 subfamily. 96.4 0.0043 9.4E-08 63.0 5.6 59 72-138 4-62 (165)
183 cd01868 Rab11_like Rab11-like. 96.4 0.0047 1E-07 62.7 5.7 58 73-138 5-62 (165)
184 cd04119 RJL RJL (RabJ-Like) su 96.4 0.0052 1.1E-07 62.2 5.7 58 74-139 3-60 (168)
185 PF05049 IIGP: Interferon-indu 96.3 0.0039 8.5E-08 71.0 5.0 96 69-178 34-134 (376)
186 cd04113 Rab4 Rab4 subfamily. 96.3 0.0053 1.2E-07 62.0 5.6 58 74-139 3-60 (161)
187 PF15619 Lebercilin: Ciliary p 96.3 1.7 3.6E-05 45.4 26.7 19 868-886 126-144 (194)
188 COG5019 CDC3 Septin family pro 96.3 0.005 1.1E-07 68.6 5.6 66 73-141 25-95 (373)
189 cd00881 GTP_translation_factor 96.3 0.011 2.5E-07 61.0 8.2 22 74-95 2-23 (189)
190 cd01895 EngA2 EngA2 subfamily. 96.3 0.016 3.6E-07 58.7 9.1 60 73-141 4-63 (174)
191 COG1116 TauB ABC-type nitrate/ 96.3 0.0058 1.3E-07 65.0 5.7 23 73-95 31-53 (248)
192 cd01866 Rab2 Rab2 subfamily. 96.3 0.006 1.3E-07 62.3 5.7 60 71-138 4-63 (168)
193 PF04849 HAP1_N: HAP1 N-termin 96.3 2.5 5.4E-05 46.8 29.2 99 785-886 162-260 (306)
194 PF05911 DUF869: Plant protein 96.2 5.3 0.00011 50.2 38.6 27 614-640 21-47 (769)
195 cd04145 M_R_Ras_like M-Ras/R-R 96.2 0.0067 1.5E-07 61.3 5.7 59 72-139 3-61 (164)
196 cd01854 YjeQ_engC YjeQ/EngC. 96.2 0.0086 1.9E-07 67.0 6.9 59 72-141 162-226 (287)
197 cd01896 DRG The developmentall 96.2 0.0073 1.6E-07 65.4 6.1 55 73-140 2-59 (233)
198 cd00154 Rab Rab family. Rab G 96.2 0.0068 1.5E-07 60.4 5.5 57 74-138 3-59 (159)
199 PRK00098 GTPase RsgA; Reviewed 96.2 0.0055 1.2E-07 68.9 5.3 23 73-95 166-188 (298)
200 COG1160 Predicted GTPases [Gen 96.2 0.014 3.1E-07 67.0 8.5 92 72-177 4-104 (444)
201 cd01881 Obg_like The Obg-like 96.2 0.0072 1.6E-07 61.8 5.7 52 76-139 1-55 (176)
202 cd04122 Rab14 Rab14 subfamily. 96.2 0.0072 1.6E-07 61.5 5.6 58 74-139 5-62 (166)
203 PF13851 GAS: Growth-arrest sp 96.2 2.1 4.5E-05 45.1 28.0 20 641-660 117-136 (201)
204 cd04139 RalA_RalB RalA/RalB su 96.2 0.0065 1.4E-07 61.3 5.3 57 74-139 3-59 (164)
205 TIGR03156 GTP_HflX GTP-binding 96.2 0.015 3.2E-07 66.9 8.6 56 70-138 188-247 (351)
206 cd04159 Arl10_like Arl10-like 96.2 0.007 1.5E-07 60.4 5.4 53 74-138 2-54 (159)
207 PF07926 TPR_MLP1_2: TPR/MLP1/ 96.2 0.79 1.7E-05 44.8 19.5 76 741-816 10-85 (132)
208 cd01865 Rab3 Rab3 subfamily. 96.2 0.0074 1.6E-07 61.4 5.6 58 74-139 4-61 (165)
209 COG1161 Predicted GTPases [Gen 96.2 0.0057 1.2E-07 69.4 5.1 58 72-142 133-191 (322)
210 cd04118 Rab24 Rab24 subfamily. 96.2 0.0073 1.6E-07 63.2 5.6 59 74-139 3-61 (193)
211 cd01860 Rab5_related Rab5-rela 96.2 0.0081 1.8E-07 60.7 5.8 55 74-138 4-60 (163)
212 cd04115 Rab33B_Rab33A Rab33B/R 96.1 0.01 2.2E-07 60.7 6.4 61 71-139 2-62 (170)
213 cd00882 Ras_like_GTPase Ras-li 96.1 0.0045 9.8E-08 60.6 3.5 57 76-140 1-57 (157)
214 smart00175 RAB Rab subfamily o 96.1 0.0089 1.9E-07 60.4 5.7 58 74-139 3-60 (164)
215 cd04112 Rab26 Rab26 subfamily. 96.1 0.0077 1.7E-07 63.0 5.4 58 74-138 3-60 (191)
216 TIGR00157 ribosome small subun 96.1 0.0058 1.3E-07 66.7 4.5 22 73-94 122-143 (245)
217 cd04106 Rab23_lke Rab23-like s 96.1 0.011 2.3E-07 59.7 6.3 60 74-139 3-62 (162)
218 cd04116 Rab9 Rab9 subfamily. 96.1 0.0097 2.1E-07 60.7 5.8 61 71-139 5-65 (170)
219 cd04109 Rab28 Rab28 subfamily. 96.0 0.011 2.3E-07 63.3 6.2 58 74-138 3-60 (215)
220 cd01891 TypA_BipA TypA (tyrosi 96.0 0.014 3.1E-07 61.2 7.1 66 71-139 2-76 (194)
221 PF09755 DUF2046: Uncharacteri 96.0 3.3 7.1E-05 45.7 36.7 116 735-857 85-203 (310)
222 PF08317 Spc7: Spc7 kinetochor 96.0 3.9 8.5E-05 46.6 31.1 10 622-631 87-96 (325)
223 cd01867 Rab8_Rab10_Rab13_like 96.0 0.0089 1.9E-07 60.9 5.2 58 73-138 5-62 (167)
224 smart00173 RAS Ras subfamily o 96.0 0.0087 1.9E-07 60.6 5.2 57 74-139 3-59 (164)
225 PF09789 DUF2353: Uncharacteri 96.0 3.3 7.1E-05 46.3 25.1 16 520-535 4-19 (319)
226 cd04136 Rap_like Rap-like subf 95.9 0.0098 2.1E-07 60.0 5.2 58 73-139 3-60 (163)
227 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 95.9 0.011 2.4E-07 60.1 5.6 57 74-138 5-61 (166)
228 KOG2655 Septin family protein 95.9 0.011 2.4E-07 66.5 5.8 65 73-140 23-91 (366)
229 cd01862 Rab7 Rab7 subfamily. 95.9 0.012 2.5E-07 60.1 5.7 58 74-139 3-60 (172)
230 cd04127 Rab27A Rab27a subfamil 95.9 0.013 2.8E-07 60.4 6.1 63 71-138 4-73 (180)
231 cd04124 RabL2 RabL2 subfamily. 95.9 0.012 2.6E-07 59.6 5.7 56 74-139 3-60 (161)
232 cd01856 YlqF YlqF. Proteins o 95.9 0.012 2.5E-07 60.6 5.6 53 73-138 117-170 (171)
233 cd04166 CysN_ATPS CysN_ATPS su 95.9 0.013 2.7E-07 62.4 6.0 22 74-95 2-23 (208)
234 PF13514 AAA_27: AAA domain 95.9 11 0.00023 50.7 57.9 25 76-100 1-25 (1111)
235 cd01889 SelB_euk SelB subfamil 95.9 0.015 3.3E-07 60.8 6.5 65 74-138 3-78 (192)
236 KOG1547 Septin CDC10 and relat 95.9 0.012 2.7E-07 61.1 5.4 65 73-140 48-116 (336)
237 cd04138 H_N_K_Ras_like H-Ras/N 95.9 0.012 2.7E-07 59.1 5.5 56 74-138 4-59 (162)
238 PF15397 DUF4618: Domain of un 95.8 3.4 7.5E-05 44.7 32.1 30 638-667 63-92 (258)
239 PF09730 BicD: Microtubule-ass 95.8 7.3 0.00016 48.4 66.6 55 766-820 395-449 (717)
240 PRK04213 GTP-binding protein; 95.8 0.014 2.9E-07 61.6 5.9 57 70-140 8-64 (201)
241 COG3596 Predicted GTPase [Gene 95.8 0.0092 2E-07 64.0 4.5 60 69-140 38-99 (296)
242 cd04111 Rab39 Rab39 subfamily. 95.8 0.014 3E-07 62.3 5.9 59 74-139 5-63 (211)
243 PF05010 TACC: Transforming ac 95.8 3.1 6.6E-05 43.8 30.7 52 735-786 84-135 (207)
244 cd04110 Rab35 Rab35 subfamily. 95.8 0.013 2.8E-07 61.8 5.5 58 71-138 6-65 (199)
245 cd01863 Rab18 Rab18 subfamily. 95.8 0.014 3E-07 58.9 5.5 58 74-139 3-60 (161)
246 TIGR03596 GTPase_YlqF ribosome 95.8 0.021 4.7E-07 63.5 7.5 59 70-140 117-175 (276)
247 cd00879 Sar1 Sar1 subfamily. 95.8 0.026 5.6E-07 58.8 7.7 66 59-139 8-74 (190)
248 cd04107 Rab32_Rab38 Rab38/Rab3 95.8 0.016 3.5E-07 61.1 6.2 58 74-138 3-60 (201)
249 KOG0978 E3 ubiquitin ligase in 95.8 7.4 0.00016 47.9 65.0 13 929-941 606-618 (698)
250 PF04849 HAP1_N: HAP1 N-termin 95.7 4.4 9.4E-05 44.9 30.1 63 719-781 205-267 (306)
251 TIGR03594 GTPase_EngA ribosome 95.7 0.031 6.7E-07 66.5 9.0 54 73-139 1-58 (429)
252 cd00876 Ras Ras family. The R 95.7 0.016 3.6E-07 58.0 5.7 57 74-139 2-58 (160)
253 cd04177 RSR1 RSR1 subgroup. R 95.7 0.016 3.5E-07 59.1 5.7 58 74-140 4-61 (168)
254 PLN03118 Rab family protein; P 95.7 0.016 3.4E-07 61.7 5.8 57 74-139 17-73 (211)
255 PRK00093 GTP-binding protein D 95.7 0.031 6.7E-07 66.6 8.9 55 73-140 3-61 (435)
256 COG4136 ABC-type uncharacteriz 95.7 0.013 2.9E-07 56.8 4.5 56 72-134 29-85 (213)
257 PF00735 Septin: Septin; Inte 95.7 0.012 2.5E-07 65.5 4.8 66 74-140 7-75 (281)
258 PF05010 TACC: Transforming ac 95.7 3.4 7.4E-05 43.4 31.6 39 735-773 162-200 (207)
259 cd00157 Rho Rho (Ras homology) 95.7 0.018 3.8E-07 58.6 5.8 58 74-140 3-60 (171)
260 PRK00093 GTP-binding protein D 95.6 0.036 7.7E-07 66.1 9.2 62 70-140 172-233 (435)
261 cd04125 RabA_like RabA-like su 95.6 0.018 3.9E-07 60.0 5.9 58 74-139 3-60 (188)
262 cd00877 Ran Ran (Ras-related n 95.6 0.018 3.8E-07 58.8 5.6 58 74-139 3-60 (166)
263 PRK03003 GTP-binding protein D 95.6 0.045 9.7E-07 65.9 10.0 77 54-139 20-97 (472)
264 cd01870 RhoA_like RhoA-like su 95.6 0.017 3.7E-07 59.2 5.6 57 74-139 4-60 (175)
265 COG1162 Predicted GTPases [Gen 95.6 0.01 2.3E-07 65.1 4.1 59 73-142 166-230 (301)
266 cd04123 Rab21 Rab21 subfamily. 95.6 0.018 4E-07 57.8 5.6 57 74-138 3-59 (162)
267 cd01859 MJ1464 MJ1464. This f 95.6 0.041 8.8E-07 55.5 8.0 56 71-138 101-156 (156)
268 TIGR01843 type_I_hlyD type I s 95.6 3 6.4E-05 49.4 25.2 16 871-886 250-265 (423)
269 COG1136 SalX ABC-type antimicr 95.6 0.012 2.7E-07 62.3 4.3 23 73-95 33-55 (226)
270 TIGR00450 mnmE_trmE_thdF tRNA 95.6 0.019 4E-07 68.1 6.2 58 73-139 205-262 (442)
271 smart00178 SAR Sar1p-like memb 95.6 0.024 5.3E-07 58.9 6.4 54 72-139 18-72 (184)
272 cd04170 EF-G_bact Elongation f 95.5 0.04 8.6E-07 61.1 8.5 22 74-95 2-23 (268)
273 cd04140 ARHI_like ARHI subfami 95.5 0.021 4.6E-07 58.0 5.8 58 73-139 3-60 (165)
274 TIGR03594 GTPase_EngA ribosome 95.5 0.055 1.2E-06 64.4 10.2 62 71-141 172-233 (429)
275 cd04137 RheB Rheb (Ras Homolog 95.5 0.02 4.4E-07 59.0 5.7 54 74-139 4-60 (180)
276 PTZ00258 GTP-binding protein; 95.5 0.017 3.7E-07 66.7 5.5 68 69-139 19-96 (390)
277 CHL00189 infB translation init 95.5 0.026 5.7E-07 70.2 7.5 97 70-179 243-341 (742)
278 cd01884 EF_Tu EF-Tu subfamily. 95.5 0.032 6.9E-07 58.6 7.1 99 72-178 3-110 (195)
279 cd04155 Arl3 Arl3 subfamily. 95.5 0.026 5.7E-07 57.6 6.3 55 72-139 15-69 (173)
280 cd04146 RERG_RasL11_like RERG/ 95.5 0.021 4.6E-07 57.9 5.6 57 74-139 2-58 (165)
281 PRK05291 trmE tRNA modificatio 95.5 0.02 4.4E-07 68.1 6.2 58 73-139 217-274 (449)
282 cd01885 EF2 EF2 (for archaea a 95.4 0.041 8.9E-07 59.0 7.7 95 74-173 3-113 (222)
283 cd04153 Arl5_Arl8 Arl5/Arl8 su 95.4 0.028 6.1E-07 57.8 6.3 56 71-139 15-70 (174)
284 PRK12299 obgE GTPase CgtA; Rev 95.4 0.022 4.8E-07 64.9 5.9 57 71-139 158-217 (335)
285 cd04117 Rab15 Rab15 subfamily. 95.4 0.024 5.2E-07 57.4 5.6 58 74-139 3-60 (161)
286 cd04135 Tc10 TC10 subfamily. 95.4 0.025 5.5E-07 57.8 5.9 59 74-141 3-61 (174)
287 smart00174 RHO Rho (Ras homolo 95.4 0.02 4.3E-07 58.6 5.1 57 74-139 1-57 (174)
288 cd04114 Rab30 Rab30 subfamily. 95.4 0.03 6.5E-07 56.9 6.4 63 69-139 5-67 (169)
289 cd04156 ARLTS1 ARLTS1 subfamil 95.4 0.029 6.4E-07 56.4 6.3 54 74-139 2-55 (160)
290 cd04160 Arfrp1 Arfrp1 subfamil 95.4 0.019 4E-07 58.3 4.8 59 74-139 2-61 (167)
291 cd01900 YchF YchF subfamily. 95.4 0.027 5.9E-07 62.1 6.3 63 74-139 1-73 (274)
292 PRK03003 GTP-binding protein D 95.3 0.064 1.4E-06 64.5 9.9 56 71-139 211-270 (472)
293 KOG0448 Mitofusin 1 GTPase, in 95.3 0.16 3.6E-06 60.8 12.7 26 68-93 106-131 (749)
294 cd01893 Miro1 Miro1 subfamily. 95.3 0.029 6.2E-07 57.1 5.9 54 74-139 3-58 (166)
295 PF12325 TMF_TATA_bd: TATA ele 95.3 1.1 2.4E-05 42.8 16.0 95 565-660 24-118 (120)
296 cd04132 Rho4_like Rho4-like su 95.3 0.028 6.1E-07 58.3 6.0 58 74-139 3-60 (187)
297 PLN03110 Rab GTPase; Provision 95.3 0.027 5.9E-07 60.2 5.9 60 71-138 12-71 (216)
298 cd01879 FeoB Ferrous iron tran 95.3 0.029 6.2E-07 56.2 5.7 56 76-141 1-56 (158)
299 cd04176 Rap2 Rap2 subgroup. T 95.3 0.03 6.6E-07 56.6 5.9 57 74-139 4-60 (163)
300 TIGR01005 eps_transp_fam exopo 95.2 5.6 0.00012 51.1 27.5 16 523-538 199-214 (754)
301 COG0486 ThdF Predicted GTPase 95.2 0.029 6.3E-07 64.7 6.1 57 74-139 220-276 (454)
302 cd04108 Rab36_Rab34 Rab34/Rab3 95.2 0.033 7.1E-07 57.1 5.8 58 74-139 3-60 (170)
303 cd04157 Arl6 Arl6 subfamily. 95.2 0.039 8.6E-07 55.5 6.3 55 74-139 2-56 (162)
304 cd04148 RGK RGK subfamily. Th 95.2 0.031 6.8E-07 60.0 5.8 57 74-139 3-61 (221)
305 cd04162 Arl9_Arfrp2_like Arl9/ 95.2 0.05 1.1E-06 55.4 7.1 54 74-139 2-55 (164)
306 cd04175 Rap1 Rap1 subgroup. T 95.1 0.031 6.7E-07 56.6 5.5 58 73-139 3-60 (164)
307 cd04167 Snu114p Snu114p subfam 95.1 0.051 1.1E-06 58.0 7.4 22 74-95 3-24 (213)
308 PF15066 CAGE1: Cancer-associa 95.1 8.6 0.00019 44.3 29.4 14 873-886 484-497 (527)
309 PRK09518 bifunctional cytidyla 95.1 0.099 2.1E-06 66.2 10.8 56 71-139 450-509 (712)
310 PTZ00132 GTP-binding nuclear p 95.1 0.033 7.1E-07 59.5 5.6 61 71-139 9-69 (215)
311 TIGR01843 type_I_hlyD type I s 95.0 5.9 0.00013 46.8 25.3 7 878-884 250-256 (423)
312 cd04120 Rab12 Rab12 subfamily. 95.0 0.1 2.2E-06 55.1 9.1 58 74-139 3-60 (202)
313 PRK13796 GTPase YqeH; Provisio 95.0 0.029 6.4E-07 64.9 5.4 55 73-139 162-221 (365)
314 cd01899 Ygr210 Ygr210 subfamil 95.0 0.038 8.2E-07 62.5 6.1 63 74-139 1-80 (318)
315 TIGR02528 EutP ethanolamine ut 95.0 0.028 6E-07 55.4 4.5 22 74-95 3-24 (142)
316 TIGR02729 Obg_CgtA Obg family 95.0 0.074 1.6E-06 60.6 8.5 57 71-139 157-216 (329)
317 PRK12296 obgE GTPase CgtA; Rev 95.0 0.033 7.2E-07 66.3 5.8 56 70-139 158-217 (500)
318 cd00878 Arf_Arl Arf (ADP-ribos 95.0 0.049 1.1E-06 54.7 6.4 53 74-139 2-54 (158)
319 PF09789 DUF2353: Uncharacteri 94.9 8 0.00017 43.3 26.6 49 831-886 132-180 (319)
320 PF06008 Laminin_I: Laminin Do 94.9 7.6 0.00016 42.9 33.3 12 617-628 94-105 (264)
321 PRK12297 obgE GTPase CgtA; Rev 94.9 0.058 1.3E-06 63.3 7.6 57 71-139 158-217 (424)
322 cd04154 Arl2 Arl2 subfamily. 94.9 0.037 7.9E-07 56.8 5.3 54 73-139 16-69 (173)
323 cd04141 Rit_Rin_Ric Rit/Rin/Ri 94.9 0.041 9E-07 56.5 5.6 57 74-139 5-61 (172)
324 cd04144 Ras2 Ras2 subfamily. 94.8 0.03 6.5E-07 58.5 4.6 56 74-138 2-57 (190)
325 PLN03108 Rab family protein; P 94.8 0.04 8.7E-07 58.6 5.5 59 73-139 8-66 (210)
326 PF00071 Ras: Ras family; Int 94.8 0.034 7.3E-07 56.1 4.7 58 74-139 2-59 (162)
327 cd04169 RF3 RF3 subfamily. Pe 94.8 0.093 2E-06 58.0 8.4 23 72-94 3-25 (267)
328 cd04168 TetM_like Tet(M)-like 94.8 0.072 1.6E-06 57.8 7.4 90 74-171 2-102 (237)
329 cd01882 BMS1 Bms1. Bms1 is an 94.8 0.11 2.4E-06 55.9 8.9 55 69-137 37-92 (225)
330 cd04143 Rhes_like Rhes_like su 94.8 0.07 1.5E-06 58.3 7.3 57 74-139 3-59 (247)
331 cd02019 NK Nucleoside/nucleoti 94.8 0.031 6.7E-07 48.0 3.6 41 73-118 1-41 (69)
332 TIGR01393 lepA GTP-binding pro 94.8 0.068 1.5E-06 65.8 8.0 103 71-178 3-115 (595)
333 cd01886 EF-G Elongation factor 94.8 0.061 1.3E-06 59.5 6.9 92 74-173 2-104 (270)
334 cd01130 VirB11-like_ATPase Typ 94.7 0.059 1.3E-06 56.2 6.3 40 56-95 10-49 (186)
335 TIGR03597 GTPase_YqeH ribosome 94.7 0.036 7.8E-07 64.1 5.1 57 73-140 156-216 (360)
336 cd04147 Ras_dva Ras-dva subfam 94.7 0.05 1.1E-06 57.3 5.7 57 74-139 2-58 (198)
337 cd04158 ARD1 ARD1 subfamily. 94.6 0.083 1.8E-06 53.9 7.1 53 74-139 2-54 (169)
338 PRK09601 GTP-binding protein Y 94.6 0.062 1.3E-06 61.4 6.7 64 73-139 4-77 (364)
339 PF13851 GAS: Growth-arrest sp 94.6 7 0.00015 41.2 29.0 37 615-651 98-134 (201)
340 TIGR02680 conserved hypothetic 94.6 27 0.00058 47.8 72.9 21 72-92 25-45 (1353)
341 CHL00071 tufA elongation facto 94.6 0.1 2.2E-06 61.5 8.7 104 68-179 9-121 (409)
342 TIGR01005 eps_transp_fam exopo 94.6 6.9 0.00015 50.2 26.0 30 705-734 193-222 (754)
343 cd04152 Arl4_Arl7 Arl4/Arl7 su 94.6 0.068 1.5E-06 55.5 6.5 57 74-138 6-62 (183)
344 cd04105 SR_beta Signal recogni 94.6 0.06 1.3E-06 57.0 6.1 57 74-139 3-59 (203)
345 cd04151 Arl1 Arl1 subfamily. 94.6 0.11 2.4E-06 52.2 7.7 53 74-139 2-54 (158)
346 PRK09602 translation-associate 94.5 0.059 1.3E-06 62.9 6.4 65 73-139 3-83 (396)
347 PF07926 TPR_MLP1_2: TPR/MLP1/ 94.5 5.1 0.00011 39.2 20.7 45 615-659 8-52 (132)
348 TIGR00491 aIF-2 translation in 94.5 0.081 1.7E-06 64.8 7.7 24 72-95 5-28 (590)
349 TIGR01425 SRP54_euk signal rec 94.5 0.076 1.6E-06 62.0 7.1 24 69-92 98-121 (429)
350 PF05911 DUF869: Plant protein 94.5 19 0.00041 45.5 59.9 37 895-931 679-715 (769)
351 PF10481 CENP-F_N: Cenp-F N-te 94.5 7.5 0.00016 41.7 20.7 50 724-773 78-127 (307)
352 PF06008 Laminin_I: Laminin Do 94.5 9.6 0.00021 42.1 33.4 26 916-941 226-251 (264)
353 cd04134 Rho3 Rho3 subfamily. 94.5 0.057 1.2E-06 56.4 5.5 57 74-139 3-59 (189)
354 PRK09435 membrane ATPase/prote 94.4 0.059 1.3E-06 61.1 5.9 34 60-93 42-78 (332)
355 COG5185 HEC1 Protein involved 94.4 12 0.00026 43.1 46.8 31 562-592 328-358 (622)
356 TIGR03007 pepcterm_ChnLen poly 94.4 6.6 0.00014 47.7 24.1 26 708-733 163-188 (498)
357 PRK09866 hypothetical protein; 94.4 0.087 1.9E-06 63.4 7.2 29 67-95 65-93 (741)
358 PRK10929 putative mechanosensi 94.4 25 0.00054 46.4 48.3 9 529-537 27-35 (1109)
359 PRK10218 GTP-binding protein; 94.3 0.14 3.1E-06 62.9 9.4 95 70-172 4-107 (607)
360 PF10481 CENP-F_N: Cenp-F N-te 94.3 5.2 0.00011 42.8 19.2 65 745-809 64-128 (307)
361 cd04102 RabL3 RabL3 (Rab-like3 94.3 0.087 1.9E-06 55.7 6.5 61 74-139 3-65 (202)
362 PRK04004 translation initiatio 94.3 0.11 2.4E-06 63.8 8.2 23 73-95 8-30 (586)
363 KOG2485 Conserved ATP/GTP bind 94.3 0.065 1.4E-06 58.6 5.4 77 73-160 145-228 (335)
364 PF12325 TMF_TATA_bd: TATA ele 94.2 2.9 6.3E-05 40.0 15.8 36 900-935 79-114 (120)
365 PF15397 DUF4618: Domain of un 94.2 9.8 0.00021 41.3 33.2 18 586-603 64-81 (258)
366 cd01892 Miro2 Miro2 subfamily. 94.2 0.093 2E-06 53.7 6.4 64 69-139 2-65 (169)
367 PTZ00369 Ras-like protein; Pro 94.2 0.073 1.6E-06 55.5 5.8 57 74-139 8-64 (189)
368 PRK09554 feoB ferrous iron tra 94.2 0.066 1.4E-06 67.6 6.3 57 73-142 5-64 (772)
369 COG3842 PotA ABC-type spermidi 94.2 0.054 1.2E-06 61.4 4.8 54 72-135 32-86 (352)
370 PLN03126 Elongation factor Tu; 94.2 0.11 2.5E-06 62.0 7.8 105 67-179 77-190 (478)
371 cd04131 Rnd Rnd subfamily. Th 94.2 0.078 1.7E-06 54.8 5.7 57 74-139 4-60 (178)
372 PLN03071 GTP-binding nuclear p 94.2 0.075 1.6E-06 57.0 5.8 62 70-139 12-73 (219)
373 cd04161 Arl2l1_Arl13_like Arl2 94.1 0.075 1.6E-06 54.2 5.5 52 74-138 2-53 (167)
374 cd04149 Arf6 Arf6 subfamily. 94.1 0.096 2.1E-06 53.5 6.2 54 73-139 11-64 (168)
375 KOG0249 LAR-interacting protei 94.1 5.3 0.00011 48.2 20.6 37 900-936 220-256 (916)
376 PF08317 Spc7: Spc7 kinetochor 94.1 13 0.00029 42.3 32.2 15 925-939 277-291 (325)
377 smart00787 Spc7 Spc7 kinetocho 94.1 13 0.00028 42.0 30.5 6 596-601 74-79 (312)
378 cd04128 Spg1 Spg1p. Spg1p (se 94.0 0.086 1.9E-06 54.7 5.8 58 74-139 3-60 (182)
379 PF00025 Arf: ADP-ribosylation 94.0 0.087 1.9E-06 54.3 5.8 64 63-139 4-69 (175)
380 cd01888 eIF2_gamma eIF2-gamma 94.0 0.13 2.9E-06 54.3 7.1 22 73-94 2-23 (203)
381 cd04129 Rho2 Rho2 subfamily. 94.0 0.089 1.9E-06 54.7 5.7 59 73-140 3-61 (187)
382 cd04130 Wrch_1 Wrch-1 subfamil 94.0 0.087 1.9E-06 54.0 5.6 58 74-140 3-60 (173)
383 COG1120 FepC ABC-type cobalami 94.0 0.056 1.2E-06 58.6 4.2 24 72-95 29-52 (258)
384 PRK05433 GTP-binding protein L 93.9 0.12 2.6E-06 63.7 7.7 105 70-179 6-120 (600)
385 PRK09518 bifunctional cytidyla 93.9 0.17 3.7E-06 64.1 9.1 27 69-95 273-299 (712)
386 COG0218 Predicted GTPase [Gene 93.9 0.25 5.5E-06 51.1 8.6 104 70-184 23-134 (200)
387 COG1163 DRG Predicted GTPase [ 93.9 0.09 2E-06 57.8 5.6 58 71-139 63-121 (365)
388 COG1100 GTPase SAR1 and relate 93.8 0.086 1.9E-06 56.2 5.5 62 72-141 6-67 (219)
389 KOG1191 Mitochondrial GTPase [ 93.8 0.075 1.6E-06 61.4 5.0 58 73-139 270-327 (531)
390 COG1160 Predicted GTPases [Gen 93.8 0.26 5.7E-06 57.0 9.3 136 38-184 138-288 (444)
391 cd01871 Rac1_like Rac1-like su 93.8 0.11 2.3E-06 53.6 5.8 57 74-139 4-60 (174)
392 TIGR03017 EpsF chain length de 93.7 18 0.00039 43.2 25.6 16 642-657 286-301 (444)
393 PRK12736 elongation factor Tu; 93.7 0.13 2.8E-06 60.3 7.0 106 68-181 9-123 (394)
394 cd03301 ABC_MalK_N The N-termi 93.6 0.11 2.3E-06 55.5 5.6 23 73-95 28-50 (213)
395 cd04121 Rab40 Rab40 subfamily. 93.6 0.12 2.6E-06 54.1 5.8 59 73-139 8-66 (189)
396 cd03296 ABC_CysA_sulfate_impor 93.6 0.11 2.3E-06 56.6 5.6 24 72-95 29-52 (239)
397 COG1126 GlnQ ABC-type polar am 93.5 0.053 1.1E-06 56.4 2.9 32 63-94 17-51 (240)
398 PLN02318 phosphoribulokinase/u 93.5 0.1 2.2E-06 62.5 5.7 53 42-94 32-88 (656)
399 KOG0086 GTPase Rab4, small G p 93.4 0.1 2.2E-06 50.5 4.5 59 73-139 11-69 (214)
400 PRK12735 elongation factor Tu; 93.4 0.16 3.6E-06 59.5 7.3 26 69-94 10-35 (396)
401 PF13207 AAA_17: AAA domain; P 93.4 0.054 1.2E-06 51.9 2.7 22 73-94 1-22 (121)
402 PTZ00133 ADP-ribosylation fact 93.4 0.1 2.3E-06 54.1 5.0 53 74-139 20-72 (182)
403 cd01874 Cdc42 Cdc42 subfamily. 93.4 0.13 2.8E-06 53.0 5.6 57 74-139 4-60 (175)
404 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 93.4 0.3 6.5E-06 50.7 8.4 58 73-139 7-64 (182)
405 cd03268 ABC_BcrA_bacitracin_re 93.3 0.088 1.9E-06 55.8 4.4 24 72-95 27-50 (208)
406 cd04150 Arf1_5_like Arf1-Arf5- 93.3 0.15 3.3E-06 51.5 5.9 53 74-139 3-55 (159)
407 TIGR03522 GldA_ABC_ATP gliding 93.3 0.079 1.7E-06 59.8 4.2 36 73-118 30-66 (301)
408 COG3883 Uncharacterized protei 93.3 15 0.00032 40.0 29.1 38 849-886 179-216 (265)
409 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 93.2 0.18 3.9E-06 54.1 6.5 57 74-139 4-60 (222)
410 COG3172 NadR Predicted ATPase/ 93.2 0.022 4.8E-07 56.0 -0.4 24 71-94 8-31 (187)
411 KOG0410 Predicted GTP binding 93.1 0.12 2.7E-06 56.5 5.1 89 68-174 175-272 (410)
412 COG3839 MalK ABC-type sugar tr 93.1 0.13 2.8E-06 58.2 5.3 23 73-95 31-53 (338)
413 cd04103 Centaurin_gamma Centau 93.0 0.15 3.3E-06 51.5 5.4 56 74-139 3-58 (158)
414 COG1341 Predicted GTPase or GT 93.0 0.24 5.2E-06 56.5 7.3 112 68-180 70-194 (398)
415 KOG0979 Structural maintenance 92.9 35 0.00076 43.4 64.9 18 75-92 46-63 (1072)
416 PRK14250 phosphate ABC transpo 92.9 0.096 2.1E-06 57.0 4.0 23 73-95 31-53 (241)
417 cd00071 GMPK Guanosine monopho 92.9 0.081 1.8E-06 52.2 3.1 22 73-94 1-22 (137)
418 TIGR00750 lao LAO/AO transport 92.9 0.083 1.8E-06 59.5 3.6 34 60-93 20-56 (300)
419 TIGR00475 selB selenocysteine- 92.9 0.21 4.6E-06 61.5 7.3 23 73-95 2-24 (581)
420 PRK15467 ethanolamine utilizat 92.9 0.081 1.8E-06 53.5 3.2 22 73-94 3-24 (158)
421 PF00005 ABC_tran: ABC transpo 92.8 0.075 1.6E-06 52.1 2.8 23 73-95 13-35 (137)
422 TIGR00484 EF-G translation elo 92.8 0.35 7.5E-06 61.1 9.3 26 69-94 8-33 (689)
423 COG2262 HflX GTPases [General 92.8 0.14 3E-06 58.2 5.1 100 69-186 190-298 (411)
424 KOG1899 LAR transmembrane tyro 92.8 18 0.0004 43.1 21.9 15 872-886 243-257 (861)
425 smart00177 ARF ARF-like small 92.7 0.17 3.7E-06 52.0 5.3 55 72-139 14-68 (175)
426 KOG0999 Microtubule-associated 92.7 26 0.00056 41.3 53.2 29 615-643 105-133 (772)
427 PF15294 Leu_zip: Leucine zipp 92.7 18 0.0004 39.6 26.0 54 676-729 192-245 (278)
428 PRK05306 infB translation init 92.6 0.32 6.8E-06 61.5 8.5 93 71-178 290-382 (787)
429 TIGR00235 udk uridine kinase. 92.6 0.091 2E-06 55.8 3.3 28 68-95 3-30 (207)
430 TIGR00487 IF-2 translation ini 92.6 0.28 6.2E-06 60.2 7.9 60 72-140 88-147 (587)
431 PRK05506 bifunctional sulfate 92.6 0.14 3E-06 64.1 5.3 26 69-95 23-48 (632)
432 PRK01889 GTPase RsgA; Reviewed 92.6 0.071 1.5E-06 61.5 2.6 24 72-95 196-219 (356)
433 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 92.6 0.2 4.2E-06 54.2 5.8 58 73-139 15-72 (232)
434 PRK12317 elongation factor 1-a 92.4 0.34 7.4E-06 57.5 8.2 27 69-95 4-30 (425)
435 TIGR01277 thiQ thiamine ABC tr 92.4 0.19 4.1E-06 53.6 5.4 23 73-95 26-48 (213)
436 cd03266 ABC_NatA_sodium_export 92.4 0.13 2.7E-06 55.1 4.0 23 73-95 33-55 (218)
437 PRK13638 cbiO cobalt transport 92.4 0.12 2.7E-06 57.3 4.1 23 73-95 29-51 (271)
438 PF13870 DUF4201: Domain of un 92.3 15 0.00033 37.8 24.2 57 738-794 46-102 (177)
439 cd04126 Rab20 Rab20 subfamily. 92.3 0.22 4.7E-06 53.4 5.6 53 74-139 3-55 (220)
440 cd03244 ABCC_MRP_domain2 Domai 92.3 0.13 2.7E-06 55.2 3.9 23 73-95 32-54 (221)
441 TIGR01288 nodI ATP-binding ABC 92.3 0.13 2.9E-06 58.1 4.2 24 72-95 31-54 (303)
442 TIGR01394 TypA_BipA GTP-bindin 92.3 0.25 5.4E-06 60.8 6.8 66 73-141 3-77 (594)
443 COG0396 sufC Cysteine desulfur 92.2 0.11 2.5E-06 54.5 3.3 35 61-95 17-54 (251)
444 PRK10418 nikD nickel transport 92.1 0.2 4.4E-06 54.9 5.4 23 73-95 31-53 (254)
445 PF13555 AAA_29: P-loop contai 92.1 0.12 2.7E-06 43.0 2.8 20 73-92 25-44 (62)
446 PRK10512 selenocysteinyl-tRNA- 92.1 0.34 7.3E-06 60.0 7.7 23 73-95 2-24 (614)
447 PRK09493 glnQ glutamine ABC tr 92.0 0.15 3.3E-06 55.4 4.1 24 72-95 28-51 (240)
448 KOG4677 Golgi integral membran 92.0 28 0.0006 40.1 31.3 13 263-275 45-57 (554)
449 COG1134 TagH ABC-type polysacc 92.0 0.13 2.7E-06 54.8 3.3 23 73-95 55-77 (249)
450 PRK00300 gmk guanylate kinase; 92.0 0.13 2.8E-06 54.4 3.5 27 70-96 4-30 (205)
451 KOG1853 LIS1-interacting prote 92.0 19 0.00041 38.1 23.8 10 989-998 299-308 (333)
452 PRK13644 cbiO cobalt transport 91.9 0.15 3.2E-06 56.7 4.1 23 73-95 30-52 (274)
453 TIGR00634 recN DNA repair prot 91.9 39 0.00085 41.7 26.6 10 1032-1041 481-490 (563)
454 cd03114 ArgK-like The function 91.9 0.17 3.7E-06 50.6 4.0 21 73-93 1-21 (148)
455 PRK15112 antimicrobial peptide 91.9 0.15 3.4E-06 56.3 4.1 23 73-95 41-63 (267)
456 PRK10771 thiQ thiamine transpo 91.9 0.23 5E-06 53.6 5.4 23 73-95 27-49 (232)
457 PRK12727 flagellar biosynthesi 91.8 0.12 2.5E-06 61.6 3.1 22 72-93 351-372 (559)
458 COG4559 ABC-type hemin transpo 91.8 0.14 3E-06 53.1 3.3 27 69-95 25-51 (259)
459 cd03222 ABC_RNaseL_inhibitor T 91.8 0.11 2.4E-06 53.6 2.7 23 73-95 27-49 (177)
460 cd03261 ABC_Org_Solvent_Resist 91.8 0.12 2.5E-06 56.1 2.9 23 73-95 28-50 (235)
461 KOG1899 LAR transmembrane tyro 91.8 35 0.00075 40.9 22.5 20 1026-1045 547-566 (861)
462 PRK00049 elongation factor Tu; 91.7 0.33 7.2E-06 57.0 6.9 26 69-94 10-35 (396)
463 PF06785 UPF0242: Uncharacteri 91.7 25 0.00053 38.9 20.5 17 839-855 201-217 (401)
464 PF09439 SRPRB: Signal recogni 91.7 0.14 3E-06 52.8 3.1 56 73-139 5-60 (181)
465 PRK09452 potA putrescine/sperm 91.7 0.2 4.4E-06 58.1 4.9 23 73-95 42-64 (375)
466 PF13514 AAA_27: AAA domain 91.7 63 0.0014 43.5 68.3 47 375-422 94-143 (1111)
467 TIGR00485 EF-Tu translation el 91.7 0.39 8.5E-06 56.4 7.4 105 68-180 9-122 (394)
468 TIGR00503 prfC peptide chain r 91.6 0.4 8.8E-06 58.2 7.6 96 69-172 9-119 (527)
469 PTZ00301 uridine kinase; Provi 91.6 0.13 2.8E-06 54.6 3.0 24 70-93 2-25 (210)
470 TIGR01166 cbiO cobalt transpor 91.6 0.13 2.8E-06 53.8 2.9 23 73-95 20-42 (190)
471 PF00485 PRK: Phosphoribulokin 91.6 0.12 2.6E-06 54.3 2.6 22 73-94 1-22 (194)
472 COG1101 PhnK ABC-type uncharac 91.5 0.19 4.1E-06 52.3 3.8 39 57-95 15-56 (263)
473 KOG2991 Splicing regulator [RN 91.5 21 0.00046 37.9 24.0 26 915-940 276-301 (330)
474 TIGR00960 3a0501s02 Type II (G 91.5 0.13 2.9E-06 54.8 2.9 23 73-95 31-53 (216)
475 KOG4360 Uncharacterized coiled 91.4 34 0.00074 40.1 24.7 21 765-785 271-291 (596)
476 PRK11000 maltose/maltodextrin 91.4 0.24 5.2E-06 57.5 5.2 23 73-95 31-53 (369)
477 cd02023 UMPK Uridine monophosp 91.4 0.1 2.2E-06 54.9 2.0 23 73-95 1-23 (198)
478 cd02025 PanK Pantothenate kina 91.4 0.098 2.1E-06 56.1 1.8 23 73-95 1-23 (220)
479 PF00769 ERM: Ezrin/radixin/mo 91.4 16 0.00034 39.9 18.8 34 691-724 11-44 (246)
480 cd03225 ABC_cobalt_CbiO_domain 91.4 0.14 3E-06 54.5 2.9 24 72-95 28-51 (211)
481 cd03300 ABC_PotA_N PotA is an 91.4 0.28 6E-06 53.1 5.3 24 72-95 27-50 (232)
482 COG1121 ZnuC ABC-type Mn/Zn tr 91.4 0.31 6.6E-06 52.8 5.5 23 72-94 31-53 (254)
483 cd03238 ABC_UvrA The excision 91.3 0.14 3E-06 52.8 2.8 21 73-93 23-43 (176)
484 PRK05124 cysN sulfate adenylyl 91.3 0.55 1.2E-05 56.4 8.2 28 68-95 24-51 (474)
485 PF09304 Cortex-I_coil: Cortex 91.3 9.7 0.00021 35.2 14.0 105 852-957 1-105 (107)
486 TIGR01000 bacteriocin_acc bact 91.3 29 0.00063 41.7 22.9 193 615-807 95-315 (457)
487 PLN03127 Elongation factor Tu; 91.3 0.68 1.5E-05 55.1 8.9 109 68-184 58-175 (447)
488 cd01875 RhoG RhoG subfamily. 91.3 0.33 7.2E-06 50.7 5.6 55 74-137 6-60 (191)
489 COG0410 LivF ABC-type branched 91.2 0.23 5E-06 52.4 4.3 32 73-114 31-62 (237)
490 cd03221 ABCF_EF-3 ABCF_EF-3 E 91.2 0.16 3.4E-06 50.6 2.9 21 73-93 28-48 (144)
491 cd03226 ABC_cobalt_CbiO_domain 91.2 0.15 3.2E-06 54.0 2.9 21 73-93 28-48 (205)
492 cd03216 ABC_Carb_Monos_I This 91.1 0.16 3.5E-06 51.7 3.0 21 73-93 28-48 (163)
493 cd03265 ABC_DrrA DrrA is the A 91.1 0.15 3.3E-06 54.6 2.9 21 73-93 28-48 (220)
494 PF00769 ERM: Ezrin/radixin/mo 91.1 16 0.00035 39.8 18.5 129 695-823 1-129 (246)
495 PRK13541 cytochrome c biogenes 91.1 0.23 5E-06 52.1 4.2 32 73-114 28-59 (195)
496 PF09787 Golgin_A5: Golgin sub 91.1 44 0.00095 40.7 37.5 308 615-934 114-430 (511)
497 cd03263 ABC_subfamily_A The AB 91.1 0.15 3.3E-06 54.5 2.9 21 73-93 30-50 (220)
498 PRK13537 nodulation ABC transp 91.1 0.21 4.6E-06 56.5 4.2 36 73-118 35-71 (306)
499 COG4598 HisP ABC-type histidin 91.1 0.16 3.4E-06 51.2 2.7 19 73-91 34-52 (256)
500 cd03269 ABC_putative_ATPase Th 91.1 0.16 3.4E-06 54.0 3.0 21 73-93 28-48 (210)
No 1
>PF02263 GBP: Guanylate-binding protein, N-terminal domain; InterPro: IPR015894 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function, and an alpha-helical finger-like C-terminal domain (IPR003191 from INTERPRO). Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3QOF_A 3Q5E_C 3QNU_A 3Q5D_A 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=100.00 E-value=1.5e-61 Score=527.78 Aligned_cols=258 Identities=47% Similarity=0.869 Sum_probs=226.9
Q ss_pred CCceeeCHHHHHHHHccCCCEEEEEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeE
Q 001482 51 KGKFRMDPEAVAALQLVKEPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNL 130 (1070)
Q Consensus 51 ~~~~~~~~eal~~l~~~~~~v~vvsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~ 130 (1070)
+++|.||++|+++|..++.||+||||+|+||||||||||+|+|...||+||++..|||+|||||+.|. +.|++++|
T Consensus 1 ~~~~~~~~~al~~l~~~~~~v~vvsi~G~~rtGKSfLln~l~~~~~gF~~~~~~~~~T~Giw~w~~~~----~~~~~~~v 76 (260)
T PF02263_consen 1 DNKLELNEEALEILQQIDQPVAVVSIVGPYRTGKSFLLNQLLGPQSGFSWGPTVEPCTKGIWMWSEPL----PDGEKVAV 76 (260)
T ss_dssp TTEEEE-HHHHHHHCTTTSBEEEEEEEEETTSSHHHHHHHHCCBSSSSESSSCSSST-SCEEEECCE-----TTSTCEEE
T ss_pred CCeEEECHHHHHHHhcCCCCEEEEEeecCCccchHHHHHHHhcccccccccCCCCCCCcceeeeeccc----ccccceeE
Confidence 47899999999999889999999999999999999999999999999999999999999999999993 56788999
Q ss_pred EEeecccccccC-CCCcchhHHHHHHHhhhhheeecCCCCCCHHHhhhhHHHHHhhhhHHHHhcCCCCCCCcccccCCce
Q 001482 131 LLLDSEGIDAYD-QTGTYSTQIFSLAVLLSSMFIYNQMGGIDESAIDRLSLVTQMTKHIRIRASGGKTTPSELGQFSPIF 209 (1070)
Q Consensus 131 ~llDteG~~~~~-~~~~~d~~ifaL~~llSS~~IyN~~~~i~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~ 209 (1070)
|||||||+++.. .+.++|++||+|++||||++|||++|.|++++|++|+++++++++|+++... .....++..+||+|
T Consensus 77 ~llDteG~~~~~~~~~~~d~~if~Ls~LLSS~~IyN~~~~i~~~~l~~L~~~~~l~~~i~~~~~~-~~~~~~~~~~fp~l 155 (260)
T PF02263_consen 77 VLLDTEGLGDVEQSDEKYDAKIFALSMLLSSVLIYNSMGNIDEDDLDQLELFTELAKHIRVKYGD-SADSEDLGKPFPSL 155 (260)
T ss_dssp EEEEEECBTTTTCCCCHHCHHHHHHHHHH-SEEEEEECSSSSHHHHHCCHHHHHHHHHHHHTHHH-HHHHHCTTTTCEEE
T ss_pred EEecchhccccccCcccccHHHHHHHHHHhCceeeCCCCccchhHHHHHHHHHHHHHHHHHhccc-ccchhhhcccchHH
Confidence 999999999854 4567899999999999999999999999999999999999999999876311 11233456789999
Q ss_pred eeeecccccccccccccCChHHHHHHhccCCCCCCchhhhhhHHHHHHHhhCCCCceEeccCCCCChhhcccccCCCcCC
Q 001482 210 VWLLRDFYLDLVEDNRKITPRDYLEIALRPVQGSGRDIAAKNEIRDSIRALFPDRECFTLVRPLSNENELQRLDQISLDR 289 (1070)
Q Consensus 210 ~wlvRD~~~~~~~~g~~~t~~~yLe~~L~~~~~~~~~~~~~n~~r~~i~~~F~~~~c~~l~~P~~~~~~l~~l~~~~~~~ 289 (1070)
+||||||++++..+|+.+|+++||+.+|+...+.++.+..+|.+|++|++||++++||+||||+.++..++++++++.++
T Consensus 156 ~wlvRDf~~~~~~~~~~~t~~eyLe~~L~~~~~~~~~~~~~N~iR~~I~~~F~~~~cf~Lp~P~~~~~~l~~l~~l~~~~ 235 (260)
T PF02263_consen 156 VWLVRDFSLELEDDGGKITPQEYLEQALKPESGQDEEIQERNKIRECIRSCFPSRDCFTLPHPGSDVDKLQNLDGLSLDD 235 (260)
T ss_dssp EEEEECE-SCTCCTTECHHHHHHHHHHCCSSTSSSCCCCCHHHHHHHHHHHECCEEEEEEE-SSCCCCC-TCGCCCBGGG
T ss_pred HHHHhhccchhhhccCCCCHHHHHHHHHhcccchhHHHHHhhHHHHHHHHHCCCCeEEEecCCCchhhhccCcccCChhh
Confidence 99999999988888889999999999999888877788889999999999999999999999999999889999999999
Q ss_pred CcHHHHHHHHHHHHHHhccCCccc
Q 001482 290 LRPEFRAGLDALTKFVFERTRPKQ 313 (1070)
Q Consensus 290 l~~~F~~~~~~l~~~i~~~~~pK~ 313 (1070)
|+|+|+++++.|+++|+....+|+
T Consensus 236 L~~eF~~~l~~l~~~i~~~~~~k~ 259 (260)
T PF02263_consen 236 LDPEFVEQLDELVKYIFSSAKVKT 259 (260)
T ss_dssp S-HHHHHHHHHHHHHHHCCT---B
T ss_pred CCHHHHHHHHHHHHHHhccCCccc
Confidence 999999999999999999887775
No 2
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=100.00 E-value=2.8e-42 Score=368.27 Aligned_cols=219 Identities=38% Similarity=0.585 Sum_probs=188.9
Q ss_pred ccCCCEEEEEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeecccccccCCCC
Q 001482 66 LVKEPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYDQTG 145 (1070)
Q Consensus 66 ~~~~~v~vvsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~~~~~~~ 145 (1070)
.++.||+||||+|++|+|||||||+|+|..+||+|+++..+||+|||||..|+.. |.+..|+||||||+++.+.+.
T Consensus 2 ~~~~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~----~~~~~v~~lDteG~~~~~~~~ 77 (224)
T cd01851 2 KAGFPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKL----GKEHAVLLLDTEGTDGRERGE 77 (224)
T ss_pred CCCCCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccC----CCcceEEEEecCCcCccccCc
Confidence 3578999999999999999999999999988999999999999999999999854 556899999999999998887
Q ss_pred -cchhHHHHHHHhhhhheeecCCCCCCHHHhhhhHHHHHhhhhHHHHhcCCCCCCCcccccCCceeeeeccccccccccc
Q 001482 146 -TYSTQIFSLAVLLSSMFIYNQMGGIDESAIDRLSLVTQMTKHIRIRASGGKTTPSELGQFSPIFVWLLRDFYLDLVEDN 224 (1070)
Q Consensus 146 -~~d~~ifaL~~llSS~~IyN~~~~i~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~wlvRD~~~~~~~~g 224 (1070)
.++++||+|++||||++|||+.+.+++.+++.|+++++++... ++.........++|.|+||||||++.....+
T Consensus 78 ~~~~~~~~~l~~llss~~i~n~~~~~~~~~~~~l~~~~~~~~~~-----~~~~~~~~~~~~~p~ll~vvRD~~~~~~~~~ 152 (224)
T cd01851 78 FEDDARLFALATLLSSVLIYNSWETILGDDLAALMGLLKTTLEV-----LGLAGLTEFEKPKPLLLFVVRDFSLDTPLEN 152 (224)
T ss_pred hhhhhHHHHHHHHHhCEEEEeccCcccHHHHHHHHHHHHHHHHh-----hhhhhhhhcccCCCceEEEEecCcCCccccc
Confidence 8999999999999999999999999999999999999876111 1111123456789999999999999876655
Q ss_pred ccCChHHHHHHhccCCCCCCchhhhhhHHHHHHHhhC--CCCceEeccCCCCChhhcccccCCCcCCCcHHHHHHHHHHH
Q 001482 225 RKITPRDYLEIALRPVQGSGRDIAAKNEIRDSIRALF--PDRECFTLVRPLSNENELQRLDQISLDRLRPEFRAGLDALT 302 (1070)
Q Consensus 225 ~~~t~~~yLe~~L~~~~~~~~~~~~~n~~r~~i~~~F--~~~~c~~l~~P~~~~~~l~~l~~~~~~~l~~~F~~~~~~l~ 302 (1070)
...+ .+........|.+|.+|+.+| ++++||++|+|+.+...+++ .++..+++|+|.++++.|+
T Consensus 153 ~~~~------------~~~~~~~~~~~~ir~~l~~~f~~~~~~cf~l~~p~~~~~~~~~--~~~~~~l~~eF~~~l~~L~ 218 (224)
T cd01851 153 LDIT------------EGRETLIEDLNKIWSSIRKPFENPPIDCFFLPRPGLLHHLLQN--EGRLKLLPPEFLEALKELR 218 (224)
T ss_pred cccc------------cccchhHHHHHHHHHHHHhhccCCcchheeccccccchhhccc--ccchhhCCHHHHHHHHHHH
Confidence 4333 234455678899999999999 99999999999999887776 6789999999999999999
Q ss_pred HHHhc
Q 001482 303 KFVFE 307 (1070)
Q Consensus 303 ~~i~~ 307 (1070)
++++.
T Consensus 219 ~~~~~ 223 (224)
T cd01851 219 DRFFS 223 (224)
T ss_pred HHhcC
Confidence 99875
No 3
>KOG2037 consensus Guanylate-binding protein [General function prediction only]
Probab=100.00 E-value=1.9e-39 Score=373.29 Aligned_cols=381 Identities=27% Similarity=0.405 Sum_probs=328.0
Q ss_pred eEEEeCCCCceeeCHHHHHHHHccCCCEEEEEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccC
Q 001482 44 RLVYCDEKGKFRMDPEAVAALQLVKEPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTAL 123 (1070)
Q Consensus 44 ~lv~~d~~~~~~~~~eal~~l~~~~~~v~vvsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~ 123 (1070)
..++.|..|+|.+|| |+.+|+.+.+||+||+|+|.||+||||+||.++|...||+++.++.|||+|||||+.|+.
T Consensus 6 ~~~~~~~~~~l~~~p-a~~~l~~~~~p~~Vv~i~g~~~~gksfiln~la~~~~gf~~~s~~~~~~~~~w~w~~p~~---- 80 (552)
T KOG2037|consen 6 MLLYENENGQLKVNP-ALEILQAIKQPVAVVAIVGLYRTGKSFILNQLAGKRIGFSVASTDKPVTKGIWMWCVPHG---- 80 (552)
T ss_pred hhhhhccccccccCc-chhHHhhccCCceEEEEEEEEcCCCceehhhhHhhhcCCCcccccccceeeEEEEEeecC----
Confidence 455568889999999 999999999999999999999999999999999999999999999999999999999984
Q ss_pred CCCceeEEEeecccccccCCCCcchhHHHHHHHhhhhheeecCCCCCCHHHhhhhHHHHHhhhhHHHHhcC----C-CCC
Q 001482 124 DGTEYNLLLLDSEGIDAYDQTGTYSTQIFSLAVLLSSMFIYNQMGGIDESAIDRLSLVTQMTKHIRIRASG----G-KTT 198 (1070)
Q Consensus 124 ~g~~~~~~llDteG~~~~~~~~~~d~~ifaL~~llSS~~IyN~~~~i~~~~l~~L~~~~~~~~~~~~~~~~----~-~~~ 198 (1070)
+|..+++||+||||++ .+...+.|||+++.|+||.++||+.|.++...|.+++++++++..+++.+.. + -.+
T Consensus 81 k~~~~~l~Lld~eg~~---~~~~~~~w~~~~~~l~~~~~~~~s~~~~~~~~~~~~~~~~~~~e~~k~~~~l~~~~~a~~~ 157 (552)
T KOG2037|consen 81 KSFLLNLVLLDTEGLK---GDNENDDWIFALAPLLSSTWVYGSEGTINGIAMWQLPFVTELTEGIKVASSLMDTQGAFDD 157 (552)
T ss_pred Cccchhhhhhcccccc---CCccchhhhhccchhhcceeeccCCcccchheecccceeeecCCcceeccccccccccccc
Confidence 5788999999999983 3456789999999999999999999999999999999999999888775532 1 123
Q ss_pred CCcccccCCceeeeecccccccccccccCChHHHHHHhccCCC-------------------------------------
Q 001482 199 PSELGQFSPIFVWLLRDFYLDLVEDNRKITPRDYLEIALRPVQ------------------------------------- 241 (1070)
Q Consensus 199 ~~~~~~~~P~~~wlvRD~~~~~~~~g~~~t~~~yLe~~L~~~~------------------------------------- 241 (1070)
..++..++|.|.|..|||++.+..+++++++++|+.-.|....
T Consensus 158 ~~~~~~~~p~fa~tt~~~slqi~~~~q~i~ed~l~~l~l~~~~g~~~l~~~~~kp~q~L~~~~~~~s~~~c~~~~~~~~~ 237 (552)
T KOG2037|consen 158 QSTFRSCFPDFALTTMDSSLQIYNDSQNIQEDDLQHLSLFTEYGRLALAHLFKKPFQDLKFLVRDQSFPFCSYIGEHGGT 237 (552)
T ss_pred cccHHHhcchhhceeeeeehhhhcccCcCCHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHhhhhhhHHHHHhccc
Confidence 4567788999999999999999999999999999875554211
Q ss_pred --------CCCchhhhhhHHHHHHHhhCCCCceEeccCCCCChhhcccccCCCcCCCcHHHHHHHHHHHHHHh--ccCCc
Q 001482 242 --------GSGRDIAAKNEIRDSIRALFPDRECFTLVRPLSNENELQRLDQISLDRLRPEFRAGLDALTKFVF--ERTRP 311 (1070)
Q Consensus 242 --------~~~~~~~~~n~~r~~i~~~F~~~~c~~l~~P~~~~~~l~~l~~~~~~~l~~~F~~~~~~l~~~i~--~~~~p 311 (1070)
..++.+.++..+|.+++.||-++.||.+|||+......+.+++ ...++.+.|..++...+..+. ..+.+
T Consensus 238 ~~l~~~l~v~~~~~~el~~~r~~~~~~~~d~~c~~~~~~~l~~~~n~~~~~-~~~~~~~~~~~ql~~~~p~~~~q~~l~~ 316 (552)
T KOG2037|consen 238 KNLDNRLKVNGPQLEELVQLRVHARSCFEDLPCFLNPHPGLAVAENPAFDG-KLEDHYNQFMGQLKVELPNLLLQELLDE 316 (552)
T ss_pred cccccceeecccchHHHHHHHHHHHhhccCcchhhcCchhhhcccCchhhh-hHHHHHHHHHHHHhhhhhHHhhhhhccc
Confidence 1123456777789999999999999999999987665555543 567788999999976666554 35678
Q ss_pred cccCCcccChhHHHHHHHHHHHHHh---CCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcccCC---C-CChHHHHHH
Q 001482 312 KQVGATVLTGPVLIGITESYLDAIN---NGAVPTISSSWQSVEEAECRRAYDSATETYMSTFDRSK---P-PEEVALGEA 384 (1070)
Q Consensus 312 K~~~g~~ltg~~l~~~~~~~v~ain---~~~~p~~~~~~~~~~~~~~~~a~~~a~~~y~~~m~~~~---p-~~~~~l~~~ 384 (1070)
|.++|..+|+..+..|++.|...+. ...+|.+.++..+.+++.+..++..|...|...|+..+ | +.+..|...
T Consensus 317 ~~~~~~~~t~~~~~e~fk~y~~i~q~~~g~~lp~pks~l~~~aea~~l~~va~ak~~~~~~~Eev~~G~~~~~~s~L~~~ 396 (552)
T KOG2037|consen 317 KEISGREVTCREMKEYFKAYDKIFQKKLGETLPGPKSMLKANAEASSLAAVAAAKDIYGPLMEEVKGGDIYLSPSGLNLK 396 (552)
T ss_pred cccCccchhHHHHHHHHHHHHHHhhHhhhhhCcCcccHHHHHHHHhhHHHHHHHHHHHhhhhhhhhcCceeecccHHHHH
Confidence 8899999999999999999999999 45899999999999999999999999999999998754 2 378999999
Q ss_pred HHHHHHHHHHHHhhc-c-CCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001482 385 HEAAVQKALAVYNAG-A-VGVGLARKKYEGLLQKFFRKAFEDHKKNVYMEA 433 (1070)
Q Consensus 385 h~~~~~~al~~f~~~-~-~g~~~~~~~~~~~L~~~i~~~~~~~~~~n~~~s 433 (1070)
|...+..|+.+|... + +|..++.+.|.+.|...+...+..++..|....
T Consensus 397 ~d~~k~~a~~~~~e~rK~ig~~e~~~~~lq~LE~v~~~l~~~~~~~~~s~~ 447 (552)
T KOG2037|consen 397 HDKVKELALKYFTEPRKGIGAEEVCQRYLQSLESVEEELLQTDQALTESKK 447 (552)
T ss_pred HHHHHHHHHHHHhhhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 999999999999887 4 888899999999999999888888887775443
No 4
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=99.97 E-value=1.3e-27 Score=266.03 Aligned_cols=177 Identities=36% Similarity=0.553 Sum_probs=151.5
Q ss_pred CCcccChhHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcccC--CCCC-hHHHHHHHHHHHHH
Q 001482 315 GATVLTGPVLIGITESYLDAINNGAVPTISSSWQSVEEAECRRAYDSATETYMSTFDRS--KPPE-EVALGEAHEAAVQK 391 (1070)
Q Consensus 315 ~g~~ltg~~l~~~~~~~v~ain~~~~p~~~~~~~~~~~~~~~~a~~~a~~~y~~~m~~~--~p~~-~~~l~~~h~~~~~~ 391 (1070)
||.+|||++|++|+++||+|||+|.||+|.|+|.+|++++|.+|++.|+.+|...|+.. +|.+ .++|...|..|..+
T Consensus 1 gG~~vtG~~L~~L~~~Yv~aIn~G~vP~iesa~~~~~e~e~~~A~~~A~~~Y~~~m~~~~~~P~~~~~eL~~~H~~~~~~ 80 (297)
T PF02841_consen 1 GGITVTGPMLAELVKSYVDAINSGSVPCIESAWQAVAEAENRAAVEKAVEHYEEQMEQRVKLPTETLEELLELHEQCEKE 80 (297)
T ss_dssp TSEB-BHHHHHHHHHHHHHHHHTTS--BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--SS-SSHHHHHHHHHHHHHH
T ss_pred CCcccccHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999886 3665 68999999999999
Q ss_pred HHHHHhhccCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhhccCCCccHHHHHHHHH
Q 001482 392 ALAVYNAGAVGVGLARKKYEGLLQKFFRKAFEDHKKNVYMEADIRCSSAIQS----MERKLRAACHSSDASIDNVVKVLD 467 (1070)
Q Consensus 392 al~~f~~~~~g~~~~~~~~~~~L~~~i~~~~~~~~~~n~~~s~~~C~~~~~~----l~~~l~~~~~~~~~~~~~~~~~l~ 467 (1070)
|+.+|+..+||+ ....|.++|...|.+.|+.|++.|...|..+|+++|+. |+.+|+..++..+++|..|.+.++
T Consensus 81 A~~~F~~~s~~d--~~~~~~~~L~~~i~~~~~~~~~~N~~~s~~~C~~~l~~l~~~le~~l~~~~~~~~gg~~~~~~~~~ 158 (297)
T PF02841_consen 81 ALEVFMKRSFGD--EDQKYQKKLMEQIEKKFEEFCKQNEEASEKKCQALLQELFQPLEEKLKQGCYSKPGGYQLFLKELD 158 (297)
T ss_dssp HHHHHHHH------GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSSTTHHHHHHHHHH
T ss_pred HHHHHHHHhcCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Confidence 999999999985 67899999999999999999999999999999999987 888888888888888999999999
Q ss_pred HHHHHHHcccCCCcchhhHHHHhhhcccc
Q 001482 468 GLISEYETSCHGPGKWQKLATFLQQSSEG 496 (1070)
Q Consensus 468 ~l~~eY~~~~~gp~k~~~l~~fl~k~le~ 496 (1070)
.+...|... |.||.....|++.++.+
T Consensus 159 ~~~~~Y~~~---p~Kg~ka~evL~~fl~~ 184 (297)
T PF02841_consen 159 ELEKEYEQE---PGKGVKAEEVLQEFLQS 184 (297)
T ss_dssp HHHHHHHHS---S---TTHHHHHHHHHHH
T ss_pred HHHHHHhhc---CCCCccHHHHHHHHHHH
Confidence 999999887 55555555555554433
No 5
>KOG2203 consensus GTP-binding protein [General function prediction only]
Probab=99.96 E-value=2.9e-27 Score=261.33 Aligned_cols=306 Identities=21% Similarity=0.339 Sum_probs=221.7
Q ss_pred CCCCeeEEEeCCCCceeeCHHHHHHHHc------cCCCEEEEEeecCCCCChhHHHHHHhCCCCCccccC---CCCcccc
Q 001482 39 PARPIRLVYCDEKGKFRMDPEAVAALQL------VKEPIGVVSVCGRARQGKSFILNQLLGRSSGFQVAS---THRPCTK 109 (1070)
Q Consensus 39 ~~~pi~lv~~d~~~~~~~~~eal~~l~~------~~~~v~vvsv~G~~r~GKS~lln~l~~~~~gF~~~~---~~~~~t~ 109 (1070)
.+..+||| |+++.| |..+++.+.. +.-.+.||||+||++||||||||.|||++ |.+.. +++.+|+
T Consensus 3 dr~stQlI--De~keF--n~s~l~~F~q~vgl~d~Gl~YhVVavmG~QSSGKSTLLN~LFgTn--F~~MDA~~gRqQTTK 76 (772)
T KOG2203|consen 3 DRCSTQLI--DEEKEF--NVSGLDYFQQCVGLRDCGLSYHVVAVMGSQSSGKSTLLNHLFGTN--FREMDAFKGRQQTTK 76 (772)
T ss_pred Ccccceee--cccccc--chhhHHHHHHHhcccccCcceeEEEEecCcccchHHHHHHHhccC--hHHHHhhhccccccc
Confidence 45678999 777878 7878888764 24589999999999999999999999998 76643 5778999
Q ss_pred eEEeeccccccccCCCCceeEEEeecccccccCC----CCcchhHHHHHHHhhhhheeecC----CCCCCHHHhhhhHHH
Q 001482 110 GLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYDQ----TGTYSTQIFSLAVLLSSMFIYNQ----MGGIDESAIDRLSLV 181 (1070)
Q Consensus 110 giw~~~~p~~~~~~~g~~~~~~llDteG~~~~~~----~~~~d~~ifaL~~llSS~~IyN~----~~~i~~~~l~~L~~~ 181 (1070)
|||+.... |-+..+++||.||.||.++ +++..+.|||+|+ |.++|.|+ .|..+.+++..|..|
T Consensus 77 GIWlar~~-------~i~p~i~vmDvEGTDGrERGEDqdFErksALFaiav--SevvivNMW~~qIG~~Q~aN~~LLKTV 147 (772)
T KOG2203|consen 77 GIWLARCA-------GIEPCILVMDVEGTDGRERGEDQDFERKSALFAIAV--SEVVIVNMWEHQIGLYQGANMALLKTV 147 (772)
T ss_pred hhhHHhhc-------CCCCceEEEecccCCcccccccccHHHHhHHHHHhh--hheehhhHHHHHhhHhhccCcHHHHHH
Confidence 99998652 4445799999999998765 3556799999998 99999996 677788888889988
Q ss_pred HHhhhhHHHHhcCCCCCCCcccccCCceeeeecccccccccccccCChHHHHH--------HhccCCCCCCchhhhhhHH
Q 001482 182 TQMTKHIRIRASGGKTTPSELGQFSPIFVWLLRDFYLDLVEDNRKITPRDYLE--------IALRPVQGSGRDIAAKNEI 253 (1070)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~P~~~wlvRD~~~~~~~~g~~~t~~~yLe--------~~L~~~~~~~~~~~~~n~~ 253 (1070)
.++.. ++.+ .+. -.-.++|||||++. .||-+-|+ ++|..++.|. .-.|
T Consensus 148 feV~l--rLF~--~rk-------~k~~LlFVIRD~~~--------~TplenLe~~l~~dlqkIW~sl~KPe---~~e~-- 203 (772)
T KOG2203|consen 148 FEVNL--RLFS--PRK-------NKTLLLFVIRDKTG--------VTPLENLEDVLREDLQKIWDSLSKPE---GHEN-- 203 (772)
T ss_pred HHHHH--HHhC--CCC-------CceEEEEEEecccC--------CCchHHhhHHHHHHHHHHHHhcCCcc---cccC--
Confidence 87743 3321 110 02348999999985 34444444 4554443221 1112
Q ss_pred HHHHHhhCCCCceEeccCCCCChhhcccccCCCcCCCcHHHHHHHHHHHHHHhcc-CCccccCC---cccChhHHHHHHH
Q 001482 254 RDSIRALFPDRECFTLVRPLSNENELQRLDQISLDRLRPEFRAGLDALTKFVFER-TRPKQVGA---TVLTGPVLIGITE 329 (1070)
Q Consensus 254 r~~i~~~F~~~~c~~l~~P~~~~~~l~~l~~~~~~~l~~~F~~~~~~l~~~i~~~-~~pK~~~g---~~ltg~~l~~~~~ 329 (1070)
..|..|| ++..+.|+|.... .+.|.++|+.|+++++.+ ..|-.+.| ..++..+|+.|.+
T Consensus 204 -s~l~DfF-dv~~v~Ls~~~~k---------------edqF~e~V~~LrqrFv~s~~s~~~f~~d~~~~iPadGfs~~a~ 266 (772)
T KOG2203|consen 204 -SPLNDFF-DVEFVGLSHKELK---------------EDQFKEQVASLRQRFVHSGISPYGFAGDYHGVIPADGFSFYAE 266 (772)
T ss_pred -Cchhhhh-ceeeeecchHHHH---------------HHHHHHHHHHHHHHHHhcCCCCCccccccCCcccccchhhhHH
Confidence 3577888 6889998884432 467999999999999876 67776655 4688899999999
Q ss_pred HHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHh--ccc---CCCCCh-HHHHHHHHHHHHHHHHHHhhcc
Q 001482 330 SYLDAINNGAVPTISSSWQSVEEAECRRAYDSATETYMST--FDR---SKPPEE-VALGEAHEAAVQKALAVYNAGA 400 (1070)
Q Consensus 330 ~~v~ain~~~~p~~~~~~~~~~~~~~~~a~~~a~~~y~~~--m~~---~~p~~~-~~l~~~h~~~~~~al~~f~~~~ 400 (1070)
.+|+.|..|.-..++..-..||...|.++..+++..|... ..+ -+|... ..|-...-....+++..|+..+
T Consensus 267 qiWd~Ie~NKDLDLPtqqvlvAt~rceEIanE~~e~fitne~~~e~~e~l~g~l~s~l~~kL~~i~e~~lseYD~qA 343 (772)
T KOG2203|consen 267 QIWDVIEENKDLDLPTQQVLVATVRCEEIANEKLEEFITNEKWLELIEALQGNLVSGLGKKLSSILEECLSEYDEQA 343 (772)
T ss_pred HHHHHHHhCcCCCCchhhhHHhhhhHHHHHHHHHHHhhhhhhHHHHHhhhcCCCccchhHHHHHHHHHHHHHHhhHH
Confidence 9999999885444444456799999999999999988652 111 112111 2344444455666777787664
No 6
>PF05879 RHD3: Root hair defective 3 GTP-binding protein (RHD3); InterPro: IPR008803 This family consists of several eukaryotic root hair defective 3 like GTP-binding proteins. It has been speculated that the RHD3 protein is a member of a novel class of GTP-binding proteins that is widespread in eukaryotes and required for regulated cell enlargement []. The family also contains the homologous Saccharomyces cerevisiae synthetic construct enhancement of YOP1 (SEY1) protein which is involved in membrane trafficking [].; GO: 0016817 hydrolase activity, acting on acid anhydrides
Probab=99.96 E-value=1.4e-26 Score=284.34 Aligned_cols=358 Identities=19% Similarity=0.260 Sum_probs=253.4
Q ss_pred ecCCCCChhHHHHHHhCCCCCccccC--CCCcccceEEeeccccccccCCCCceeEEEeecccccccCC----CCcchhH
Q 001482 77 CGRARQGKSFILNQLLGRSSGFQVAS--THRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYDQ----TGTYSTQ 150 (1070)
Q Consensus 77 ~G~~r~GKS~lln~l~~~~~gF~~~~--~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~~~~~----~~~~d~~ 150 (1070)
+|+++||||||||.|||+. |.|.+ ++++||+||||...+... +....+|+||+||++|.++ ++++.+.
T Consensus 1 ~g~qssgkstlln~lf~t~--f~~m~~~~r~qtt~gi~~~~~~~~~----~~~~~~~v~d~eg~d~~er~~~~~fe~~~a 74 (742)
T PF05879_consen 1 FGSQSSGKSTLLNHLFGTQ--FDVMDESGRQQTTKGIWMAKAKEVE----SSESNILVLDVEGTDGRERGEDQDFERKSA 74 (742)
T ss_pred CCCCCCcHHHHHHHHHCCC--ccccccccccccchhhHHHhccccc----cCCCceEEEeCCCCCchhhccccchHHHHH
Confidence 5999999999999999999 99976 467899999999776432 1234789999999999865 3456788
Q ss_pred HHHHHHhhhhheeecC----CCCCCHHHhhhhHHHHHhhhhHHHHhcCCCCCCCcccccCCceeeeeccccccccccccc
Q 001482 151 IFSLAVLLSSMFIYNQ----MGGIDESAIDRLSLVTQMTKHIRIRASGGKTTPSELGQFSPIFVWLLRDFYLDLVEDNRK 226 (1070)
Q Consensus 151 ifaL~~llSS~~IyN~----~~~i~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~wlvRD~~~~~~~~g~~ 226 (1070)
+||||+ |.++|+|+ .|..+.+++..|..|.++.-.+..++ .. ....+.|+||||||+.....+.-.
T Consensus 75 lf~la~--s~~~iiN~w~~~iG~~~~an~~lLktvfevnl~lf~~~--~~------~~~k~~llfviRD~~~~tp~e~l~ 144 (742)
T PF05879_consen 75 LFALAV--SDVLIINMWEHDIGRYQGANMGLLKTVFEVNLQLFGKS--KS------NDRKTLLLFVIRDHTGVTPLENLE 144 (742)
T ss_pred HHHHHh--hhheeeehhhhhhhhhcccchHHHHHHHHHHHHHHhhc--cc------CCCCceEEEEEeeCCCCCcHHHHH
Confidence 999987 99999997 68888899999999998855443221 10 123577999999998511111111
Q ss_pred CChHHHHHHhccCCCCCCchhhhhhHHHHHHHhhCCCCceEeccCCCCChhhcccccCCCcCCCcHHHHHHHHHHHHHHh
Q 001482 227 ITPRDYLEIALRPVQGSGRDIAAKNEIRDSIRALFPDRECFTLVRPLSNENELQRLDQISLDRLRPEFRAGLDALTKFVF 306 (1070)
Q Consensus 227 ~t~~~yLe~~L~~~~~~~~~~~~~n~~r~~i~~~F~~~~c~~l~~P~~~~~~l~~l~~~~~~~l~~~F~~~~~~l~~~i~ 306 (1070)
-+-.+.|+++|..+..|..- .+ ..|..|| ++..++|||.... .+.|.++|..|++++.
T Consensus 145 ~~l~~dl~~iW~~i~kP~~~---~~---~~~~d~F-d~~f~~LpH~~~~---------------~e~F~~~v~~Lr~rf~ 202 (742)
T PF05879_consen 145 ETLREDLEKIWDSISKPEGF---EN---SSLSDFF-DLEFTALPHKILQ---------------PEKFNEDVAKLRQRFV 202 (742)
T ss_pred HHHHHHHHHHHHhccCcccc---cC---CChhhee-eeeeeccCchhhh---------------HHHHHHHHHHHHHHHh
Confidence 23455666677655433211 11 3588999 8999999997654 3679999999999998
Q ss_pred cc--CCc---cccCCcccChhHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcccC--------
Q 001482 307 ER--TRP---KQVGATVLTGPVLIGITESYLDAINNGAVPTISSSWQSVEEAECRRAYDSATETYMSTFDRS-------- 373 (1070)
Q Consensus 307 ~~--~~p---K~~~g~~ltg~~l~~~~~~~v~ain~~~~p~~~~~~~~~~~~~~~~a~~~a~~~y~~~m~~~-------- 373 (1070)
.. ..| +.-..+.|++.+|..|++.+|++|.++.-..+|+.-..+|...|.+++.+++..|...+...
T Consensus 203 ~~~~~~~~~~~~~y~~~iP~dG~~~y~~~iW~~I~~nkDLDLPtqq~mlA~fRCdEI~~e~l~~f~~~~~~~~~~~~~l~ 282 (742)
T PF05879_consen 203 DSKNIEDGLFKPEYHRRIPADGFSMYAENIWEQIKNNKDLDLPTQQEMLAQFRCDEIANEVLEEFDEDIKELIEKWSELE 282 (742)
T ss_pred ccCcCCCCCCchhhcCCCChHHhHHHHHHHHHHHHhCccCCCCcHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhh
Confidence 76 111 11134568889999999999999999865566667788999999999999999998875431
Q ss_pred ---CCCChHHHHHHHHHHHHHHHHHHhhccCC-ChhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 001482 374 ---KPPEEVALGEAHEAAVQKALAVYNAGAVG-VGLARKKYEGLLQKFFRKAFED-HKKNVYMEADIRCSSAIQSMERKL 448 (1070)
Q Consensus 374 ---~p~~~~~l~~~h~~~~~~al~~f~~~~~g-~~~~~~~~~~~L~~~i~~~~~~-~~~~n~~~s~~~C~~~~~~l~~~l 448 (1070)
.+.....|..........|+..|+..+-. ...++.+.+..|...|...+.. |... ....|..++..+.+.|
T Consensus 283 ~~~~~~~~~~fg~~~~~l~~~~L~~YD~~AsrY~~~V~~~Kr~eL~~~i~~~l~~lf~~q----L~~L~~~~l~~Fk~~l 358 (742)
T PF05879_consen 283 EAVQGGVVEDFGKKLKSLRDKALEEYDEEASRYHKSVYQEKRQELESKIDSELQPLFQKQ----LKHLRKKLLESFKEAL 358 (742)
T ss_pred hhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 13345789999999999999999987532 2356666677777766655443 2222 2345677777777777
Q ss_pred HhhccCCCccHHHH-HHHHHHHHHHHHccc
Q 001482 449 RAACHSSDASIDNV-VKVLDGLISEYETSC 477 (1070)
Q Consensus 449 ~~~~~~~~~~~~~~-~~~l~~l~~eY~~~~ 477 (1070)
..... .+.+|... ......+...|...+
T Consensus 359 ~~~lk-~~~~Fa~~v~~~~~~~~~~F~~~a 387 (742)
T PF05879_consen 359 SSALK-SGEDFAEAVRECKQSALEEFEESA 387 (742)
T ss_pred HHHhh-cCCCHHHHHHHHHHHHHHHHHHHH
Confidence 64332 23344332 333455556666554
No 7
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.74 E-value=8e-12 Score=166.01 Aligned_cols=411 Identities=12% Similarity=0.115 Sum_probs=228.7
Q ss_pred CccHHHHHHHHHHHHHHHHcccCCCcchhhHHHHhhhcccc------chHHHHHHHHHHHHHHHHHHHHHHhhHHHH---
Q 001482 456 DASIDNVVKVLDGLISEYETSCHGPGKWQKLATFLQQSSEG------PILDLVKRLIDQIGSERSSLMLKYRSIEDN--- 526 (1070)
Q Consensus 456 ~~~~~~~~~~l~~l~~eY~~~~~gp~k~~~l~~fl~k~le~------~~~~Lc~r~~~~~~~~~~~l~~~l~~~~~~--- 526 (1070)
...+++|...+..+...|.......+.......|+.++++. +||+||.|.|..... ...|..++......
T Consensus 631 ~~~~~~~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~k~ie~a~~~~~~~C~LC~R~f~~eee-~~~f~~~L~~~~~~~p~ 709 (1311)
T TIGR00606 631 VCGSQDEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSCCPVCQRVFQTEAE-LQEFISDLQSKLRLAPD 709 (1311)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcCCCCCCCCCChhH-HHHHHHHHHHHHhcchh
Confidence 34678899999999999999887777776677776666555 599999999987753 45566555555444
Q ss_pred -HHHHHHHHHHHHHhHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001482 527 -MKLLKKQLEDSERYKSEYLKRYDDAIN---DKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYD 602 (1070)
Q Consensus 527 -l~~L~k~le~~e~~~~e~~~~le~~i~---~~kk~~~e~~~~i~~L~~~~~~Le~~~~~l~~eLe~~~~el~e~k~k~e 602 (1070)
...+.+.+ ..+++.|+.... .+-........+++.++..+..++..+..+..++++....+.......+
T Consensus 710 ~~~~~~~~~-------~~~~~~~e~l~~l~~~~~~~~~l~~~eip~l~~~l~~le~~l~~~~~~le~~~~~l~~~~~~~~ 782 (1311)
T TIGR00606 710 KLKSTESEL-------KKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEE 782 (1311)
T ss_pred hHHHHHHHH-------HHHHHHHHHHHHhhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 44455444 344444442111 1111111123467777777777777777777777777777777777766
Q ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001482 603 QVLTKQKAM---EDQVCSEIEVLKSRSTAAEARLA---------AAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAI 670 (1070)
Q Consensus 603 ~~~~el~~~---~~~l~~Ei~~Lk~~l~~le~~l~---------~l~~e~q~lq~el~e~k~~le~e~~elk~~le~~~~ 670 (1070)
.+.+ +... +..+..++..++.+++.++..+. .++.++..++.++..+...+.....+. ..+.....
T Consensus 783 ~~es-L~~~v~~i~r~~~ei~~l~~qie~l~~~l~~~~~~~s~~ele~ei~~~~~el~~l~~~~e~l~~e~-e~~~~eI~ 860 (1311)
T TIGR00606 783 SAKV-CLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLI-QDQQEQIQ 860 (1311)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 5544 2222 24577788888888887777653 233444444444444433332222221 11111112
Q ss_pred HHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH
Q 001482 671 VQERTS-------KEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEV----EISSQ 739 (1070)
Q Consensus 671 ~le~~~-------~~l~~~l~~lr~ele~~i~e~e~ei~el~~kie~~e~~l~~l~~el~e~e~ki~~~e~----e~~~l 739 (1070)
.++..+ ..+...+. .+.+++..+.++..++..+...+..+..++..+...+..+......+.. ....+
T Consensus 861 ~Lq~ki~el~~~klkl~~~l~-~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 939 (1311)
T TIGR00606 861 HLKSKTNELKSEKLQIGTNLQ-RRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKA 939 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 221111 12222222 3446677777777777777777777777777777777666666554333 22222
Q ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001482 740 KLETK---ELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAA 816 (1070)
Q Consensus 740 ~~ei~---~l~~~le~~~~~i~~le~~l~~le~e~~~le~~l~~~~~~~ee~~e~l~~~e~e~~~~~e~~~~l~~e~~~a 816 (1070)
+.++. ....++..+...|..|... ..... +......+......+..++.++..++..+..++.++..+
T Consensus 940 ~~~~~~~~~~~~~~~~~~~~i~~y~~~--~~~~q-------L~~~e~el~~~~~~ie~le~e~~~l~~~i~~l~kel~~~ 1010 (1311)
T TIGR00606 940 QDKVNDIKEKVKNIHGYMKDIENKIQD--GKDDY-------LKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQ 1010 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc--CCHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222 2222333333333333221 00111 222222233333444555555555556666666666666
Q ss_pred HhhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001482 817 RKGKSEFENLAMER--MAVIERVQRQIESLERQK-----TDLTNEVNRIRESELEALSKVALLEARVEEREKEIESL 886 (1070)
Q Consensus 817 ~~ek~~~q~~~~e~--~~~ie~l~~~i~~Le~e~-----~~l~~el~~l~~~~~~~~~~~~~le~~v~ele~eie~L 886 (1070)
+..++++...+..+ ..++..+..+|..|+.+. ..+..+...+......+.+..+.+.+.+..++.++..+
T Consensus 1011 ~~~kr~l~dnL~~~~~~~~l~el~~eI~~l~~~~~~~~~~~~~~e~~~l~~~~~~l~~~~a~l~g~~k~le~qi~~l 1087 (1311)
T TIGR00606 1011 KIQERWLQDNLTLRKRENELKEVEEELKQHLKEMGQMQVLQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHF 1087 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66665543332222 455566666666664433 45666777777777777777777777777777777766
No 8
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.72 E-value=1e-10 Score=152.28 Aligned_cols=357 Identities=18% Similarity=0.257 Sum_probs=241.4
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhH---HH-----------HHHHhHHHHH-------HHH----HHH
Q 001482 505 LIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYK---SE-----------YLKRYDDAIN-------DKK----KLA 559 (1070)
Q Consensus 505 ~~~~~~~~~~~l~~~l~~~~~~l~~L~k~le~~e~~~---~e-----------~~~~le~~i~-------~~k----k~~ 559 (1070)
.++.......++..+.+.+.+++..+.+++++..... .+ ++..++.... .++ ..+
T Consensus 1112 ~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~~~~t~~q~e~~~k~e~e~~~l~~~leee~~~~e~~~~~lr~~~~~~~ 1191 (1930)
T KOG0161|consen 1112 ELEAERASRAKAERQRRDLSEELEELKEELEEQGGTTAAQLELNKKREAEVQKLRRDLEEETLDHEAQIEELRKKHADSL 1191 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3333344556777777777777777777777663322 11 1222221111 121 222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHH--------------HHHH
Q 001482 560 DDYTSRINNLQGENISLREKSSSLSKTVDSLKNEIS----------DWKRKYDQVLTKQKAM--------------EDQV 615 (1070)
Q Consensus 560 ~e~~~~i~~L~~~~~~Le~~~~~l~~eLe~~~~el~----------e~k~k~e~~~~el~~~--------------~~~l 615 (1070)
.++..++.+++.....++..+..+..++.++..++. ...+.++....+++.. ...+
T Consensus 1192 ~el~~qle~l~~~k~~lekek~~lq~e~~~l~~ev~~~~~~k~~~e~~~k~~E~~l~elq~k~~~~~~~~~~l~~q~~~l 1271 (1930)
T KOG0161|consen 1192 AELQEQLEQLQKDKAKLEKEKSDLQREIADLAAELEQLSSEKKDLEKKDKKLEAQLSELQLKLDEQERLRNDLTAKRSRL 1271 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356666777777777777777666666666653333 2222333333333222 2246
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Q 001482 616 CSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDV---LREEFSS 692 (1070)
Q Consensus 616 ~~Ei~~Lk~~l~~le~~l~~l~~e~q~lq~el~e~k~~le~e~~elk~~le~~~~~le~~~~~l~~~l~~---lr~ele~ 692 (1070)
..++..+.+++++.+..+..+.+....+..+++.+++.++.+... +..+..+...++.++..+...++. .+.++..
T Consensus 1272 ~~E~~~l~~~lee~e~~~~~~~r~~~~~~~qle~~k~qle~e~r~-k~~l~~~l~~l~~e~~~l~e~leee~e~~~~l~r 1350 (1930)
T KOG0161|consen 1272 QNENEELSRQLEEAEAKLSALSRDKQALESQLEELKRQLEEETRE-KSALENALRQLEHELDLLREQLEEEQEAKNELER 1350 (1930)
T ss_pred hhhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777788888888888888888888888888899998888887765 555556555565555544433332 2335556
Q ss_pred HHHHHHHHHHHHHHhHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001482 693 TLAEKEEEMKEKATKIEHA---------------EQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKA 757 (1070)
Q Consensus 693 ~i~e~e~ei~el~~kie~~---------------e~~l~~l~~el~e~e~ki~~~e~e~~~l~~ei~~l~~~le~~~~~i 757 (1070)
.+.....++.+++.+++.. ...++.++..+..+..++..++.....++.++.++...++.....+
T Consensus 1351 ~lsk~~~e~~~~~~k~e~~~~~~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d~~~~~~~~ 1430 (1930)
T KOG0161|consen 1351 KLSKANAELAQWKKKFEEEVLQRLEELEELKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQELEDLQLDLERSRAAV 1430 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 6666666666666655443 2334455555556666666677788888899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001482 758 QSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERV 837 (1070)
Q Consensus 758 ~~le~~l~~le~e~~~le~~l~~~~~~~ee~~e~l~~~e~e~~~~~e~~~~l~~e~~~a~~ek~~~q~~~~e~~~~ie~l 837 (1070)
..+++++.....-+.+++...+....+++..+..+...+.++..+...++.+...++.+.++..+++....+....+..+
T Consensus 1431 ~~le~k~k~f~k~l~e~k~~~e~l~~Eld~aq~e~r~~~tel~kl~~~lee~~e~~e~l~renk~l~~ei~dl~~~~~e~ 1510 (1930)
T KOG0161|consen 1431 AALEKKQKRFEKLLAEWKKKLEKLQAELDAAQRELRQLSTELQKLKNALEELLEQLEELRRENKNLSQEIEDLEEQKDEG 1510 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998988888888888888888888887777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001482 838 QRQIESLERQKTDLTNEVNRIRESE 862 (1070)
Q Consensus 838 ~~~i~~Le~e~~~l~~el~~l~~~~ 862 (1070)
.+.+.+++..+..++.+...++..+
T Consensus 1511 ~k~v~elek~~r~le~e~~elQ~aL 1535 (1930)
T KOG0161|consen 1511 GKRVHELEKEKRRLEQEKEELQAAL 1535 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777666666666655443
No 9
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.68 E-value=9.3e-10 Score=143.54 Aligned_cols=226 Identities=20% Similarity=0.223 Sum_probs=142.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001482 714 CLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCK 793 (1070)
Q Consensus 714 ~l~~l~~el~e~e~ki~~~e~e~~~l~~ei~~l~~~le~~~~~i~~le~~l~~le~e~~~le~~l~~~~~~~ee~~e~l~ 793 (1070)
++..+...+.+++..+..+......+..++.++..+++........+...+..++.++..+..+++.......++...+.
T Consensus 1274 E~~~l~~~lee~e~~~~~~~r~~~~~~~qle~~k~qle~e~r~k~~l~~~l~~l~~e~~~l~e~leee~e~~~~l~r~ls 1353 (1930)
T KOG0161|consen 1274 ENEELSRQLEEAEAKLSALSRDKQALESQLEELKRQLEEETREKSALENALRQLEHELDLLREQLEEEQEAKNELERKLS 1353 (1930)
T ss_pred hHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555666666666777777777777777777777777777888888888888888877777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001482 794 VAEKEAKKATELADRERAE-AAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSKVALL 872 (1070)
Q Consensus 794 ~~e~e~~~~~e~~~~l~~e-~~~a~~ek~~~q~~~~e~~~~ie~l~~~i~~Le~e~~~l~~el~~l~~~~~~~~~~~~~l 872 (1070)
.+..++.....+++..... ...+...++.+..........++.+......|+..+..+..++..+.............+
T Consensus 1354 k~~~e~~~~~~k~e~~~~~~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d~~~~~~~~~~l 1433 (1930)
T KOG0161|consen 1354 KANAELAQWKKKFEEEVLQRLEELEELKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQELEDLQLDLERSRAAVAAL 1433 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 7777777666666544443 445555556666666666777888888888888899998888888887766665555555
Q ss_pred HHHHHHHHHHHHHHHhhhHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001482 873 EARVEEREKEIESLLESNNE--------------QRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQ 938 (1070)
Q Consensus 873 e~~v~ele~eie~L~~~~~e--------------~r~~~i~~le~~Le~er~~~~ea~~r~~~L~~ql~~~~~~l~~le~ 938 (1070)
+.+++..+..+.+. +...+ .....+..+...++...+..+.++++-+.++.++..+...+..+..
T Consensus 1434 e~k~k~f~k~l~e~-k~~~e~l~~Eld~aq~e~r~~~tel~kl~~~lee~~e~~e~l~renk~l~~ei~dl~~~~~e~~k 1512 (1930)
T KOG0161|consen 1434 EKKQKRFEKLLAEW-KKKLEKLQAELDAAQRELRQLSTELQKLKNALEELLEQLEELRRENKNLSQEIEDLEEQKDEGGK 1512 (1930)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555544444444 22111 1112222333444444445555555555555555555555554443
Q ss_pred HH
Q 001482 939 EL 940 (1070)
Q Consensus 939 el 940 (1070)
-+
T Consensus 1513 ~v 1514 (1930)
T KOG0161|consen 1513 RV 1514 (1930)
T ss_pred HH
Confidence 33
No 10
>KOG2037 consensus Guanylate-binding protein [General function prediction only]
Probab=99.68 E-value=1.3e-17 Score=193.15 Aligned_cols=175 Identities=19% Similarity=0.209 Sum_probs=144.7
Q ss_pred CCCCCeeEEEe--CCCCceeeCHHHHHHHHc----cCCCEEEEEeecCCCCChhHHHHHHhCC-----------------
Q 001482 38 GPARPIRLVYC--DEKGKFRMDPEAVAALQL----VKEPIGVVSVCGRARQGKSFILNQLLGR----------------- 94 (1070)
Q Consensus 38 ~~~~pi~lv~~--d~~~~~~~~~eal~~l~~----~~~~v~vvsv~G~~r~GKS~lln~l~~~----------------- 94 (1070)
..|.||+.|.. ..++.|.+|+.|.+.+-. .+.||++++++|+++.||||++|++|-.
T Consensus 29 ~~p~~Vv~i~g~~~~gksfiln~la~~~~gf~~~s~~~~~~~~~w~w~~p~~k~~~~~l~Lld~eg~~~~~~~~~w~~~~ 108 (552)
T KOG2037|consen 29 KQPVAVVAIVGLYRTGKSFILNQLAGKRIGFSVASTDKPVTKGIWMWCVPHGKSFLLNLVLLDTEGLKGDNENDDWIFAL 108 (552)
T ss_pred cCCceEEEEEEEEcCCCceehhhhHhhhcCCCcccccccceeeEEEEEeecCCccchhhhhhccccccCCccchhhhhcc
Confidence 56677777766 667899999999998742 4689999999999999999999998732
Q ss_pred --CCCccccCCCCcccceEEeeccccccccCCCCceeEEEeecccccccCCCCcchhHHHHHHHhhhhheeecCCCCCCH
Q 001482 95 --SSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYDQTGTYSTQIFSLAVLLSSMFIYNQMGGIDE 172 (1070)
Q Consensus 95 --~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~~~~~~~~~d~~ifaL~~llSS~~IyN~~~~i~~ 172 (1070)
..||.|..+..+.|.|||||..||....++|.++++.++||+|..+...+...+...|++++++||+.|||....|++
T Consensus 109 ~~l~~~~~~~~s~~~~~~~~~~~~~~~~~~~e~~k~~~~l~~~~~a~~~~~~~~~~~p~fa~tt~~~slqi~~~~q~i~e 188 (552)
T KOG2037|consen 109 APLLSSTWVYGSEGTINGIAMWQLPFVTELTEGIKVASSLMDTQGAFDDQSTFRSCFPDFALTTMDSSLQIYNDSQNIQE 188 (552)
T ss_pred chhhcceeeccCCcccchheecccceeeecCCcceeccccccccccccccccHHHhcchhhceeeeeehhhhcccCcCCH
Confidence 246888888889999999999999999999999999999999976555556667899999999999999999999999
Q ss_pred HHhhhhHHHHHhhhhHHHHhcCCCCCCCcccccCCceeeeecccccccc
Q 001482 173 SAIDRLSLVTQMTKHIRIRASGGKTTPSELGQFSPIFVWLLRDFYLDLV 221 (1070)
Q Consensus 173 ~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~wlvRD~~~~~~ 221 (1070)
+++++|+++++++....- ..+...+-.+.+++|||+.+..
T Consensus 189 d~l~~l~l~~~~g~~~l~---------~~~~kp~q~L~~~~~~~s~~~c 228 (552)
T KOG2037|consen 189 DDLQHLSLFTEYGRLALA---------HLFKKPFQDLKFLVRDQSFPFC 228 (552)
T ss_pred HHHHHHHHHHHHHHHHHH---------HhccCcHHHHHHHHHHhhhhhh
Confidence 999999999999874321 1111223358899999988754
No 11
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.67 E-value=2.9e-08 Score=120.73 Aligned_cols=59 Identities=19% Similarity=0.417 Sum_probs=40.4
Q ss_pred ceeeCHHHHHHHHccC-----CC--EEEEEeecCCCCChhHHHHHHh---C----------------CCCCccccCCCCc
Q 001482 53 KFRMDPEAVAALQLVK-----EP--IGVVSVCGRARQGKSFILNQLL---G----------------RSSGFQVASTHRP 106 (1070)
Q Consensus 53 ~~~~~~eal~~l~~~~-----~~--v~vvsv~G~~r~GKS~lln~l~---~----------------~~~gF~~~~~~~~ 106 (1070)
+|-|..=.+.-+++.- +| -.+-+|+||.|||||-+...|| | .+.|+ +..++
T Consensus 83 RL~I~~i~~~NFKSYaG~~ilGPFHksFtaIvGPNGSGKSNVIDsmLFVFGfRA~kiR~~klS~LIh~S~~~---~~l~S 159 (1293)
T KOG0996|consen 83 RLMITEIVVENFKSYAGKQILGPFHKSFTAIVGPNGSGKSNVIDSMLFVFGFRASKIRSKKLSALIHKSDGH---PNLQS 159 (1293)
T ss_pred eeeehhhhhhhhhhhcCceeecCCCCCceeeECCCCCCchHHHHHHHHHhhhhHhHHhHHHHHHHHhccCCC---CCCcc
Confidence 5666666666666532 23 3489999999999999998764 3 12343 45678
Q ss_pred ccceEEee
Q 001482 107 CTKGLWLW 114 (1070)
Q Consensus 107 ~t~giw~~ 114 (1070)
|++-|.+-
T Consensus 160 CsV~vhFq 167 (1293)
T KOG0996|consen 160 CSVEVHFQ 167 (1293)
T ss_pred eeEEEeee
Confidence 98888754
No 12
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.64 E-value=4.4e-08 Score=131.42 Aligned_cols=23 Identities=30% Similarity=0.556 Sum_probs=19.4
Q ss_pred EEEeecCCCCChhHHHHH---HhCCC
Q 001482 73 VVSVCGRARQGKSFILNQ---LLGRS 95 (1070)
Q Consensus 73 vvsv~G~~r~GKS~lln~---l~~~~ 95 (1070)
+++|+||.|+|||+||.. ++|..
T Consensus 25 ~~~i~G~NGsGKS~ll~ai~~~lg~~ 50 (1179)
T TIGR02168 25 ITGIVGPNGCGKSNIVDAIRWVLGEQ 50 (1179)
T ss_pred cEEEECCCCCChhHHHHHHHHHHcCC
Confidence 789999999999999955 56654
No 13
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.63 E-value=3.1e-08 Score=132.17 Aligned_cols=21 Identities=24% Similarity=0.330 Sum_probs=18.8
Q ss_pred EEEEeecCCCCChhHHHHHHh
Q 001482 72 GVVSVCGRARQGKSFILNQLL 92 (1070)
Q Consensus 72 ~vvsv~G~~r~GKS~lln~l~ 92 (1070)
.+++|+||.|+|||+|+..|.
T Consensus 29 ~~~~I~G~NGaGKTTil~ai~ 49 (1311)
T TIGR00606 29 PLTILVGPNGAGKTTIIECLK 49 (1311)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 378999999999999999883
No 14
>PRK02224 chromosome segregation protein; Provisional
Probab=99.59 E-value=6.7e-09 Score=134.46 Aligned_cols=21 Identities=33% Similarity=0.501 Sum_probs=18.4
Q ss_pred EEEEeecCCCCChhHHHHHHh
Q 001482 72 GVVSVCGRARQGKSFILNQLL 92 (1070)
Q Consensus 72 ~vvsv~G~~r~GKS~lln~l~ 92 (1070)
+|..|+|+.|+|||+||..|.
T Consensus 24 g~~~i~G~Ng~GKStil~ai~ 44 (880)
T PRK02224 24 GVTVIHGVNGSGKSSLLEACF 44 (880)
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 467779999999999999865
No 15
>PRK02224 chromosome segregation protein; Provisional
Probab=99.52 E-value=1.9e-08 Score=130.34 Aligned_cols=70 Identities=24% Similarity=0.333 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001482 868 KVALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQE 939 (1070)
Q Consensus 868 ~~~~le~~v~ele~eie~L~~~~~e~r~~~i~~le~~Le~er~~~~ea~~r~~~L~~ql~~~~~~l~~le~e 939 (1070)
++..+..++.++..++..+ . ........+..++..+...+..+.....+.+.++.++..++..+..++..
T Consensus 573 ~~~~~~~~~~~l~~~~~~l-e-~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~r~~i~~l~~~ 642 (880)
T PRK02224 573 EVAELNSKLAELKERIESL-E-RIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAE 642 (880)
T ss_pred HHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444 1 22333334444444444444444444444555555566666666665443
No 16
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.43 E-value=2.8e-06 Score=114.18 Aligned_cols=13 Identities=8% Similarity=0.135 Sum_probs=5.6
Q ss_pred CCCCcchhHHHHH
Q 001482 142 DQTGTYSTQIFSL 154 (1070)
Q Consensus 142 ~~~~~~d~~ifaL 154 (1070)
+++.-.|+..|+|
T Consensus 35 GKS~ll~ai~~~l 47 (1179)
T TIGR02168 35 GKSNIVDAIRWVL 47 (1179)
T ss_pred ChhHHHHHHHHHH
Confidence 3433334444444
No 17
>PRK03918 chromosome segregation protein; Provisional
Probab=99.42 E-value=5.6e-07 Score=116.87 Aligned_cols=21 Identities=38% Similarity=0.621 Sum_probs=17.9
Q ss_pred EEEEeecCCCCChhHHHHHHh
Q 001482 72 GVVSVCGRARQGKSFILNQLL 92 (1070)
Q Consensus 72 ~vvsv~G~~r~GKS~lln~l~ 92 (1070)
+|.+|+|+.|+|||+|+..|.
T Consensus 24 g~~~i~G~nG~GKStil~ai~ 44 (880)
T PRK03918 24 GINLIIGQNGSGKSSILEAIL 44 (880)
T ss_pred CcEEEEcCCCCCHHHHHHHHH
Confidence 356799999999999999763
No 18
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.40 E-value=1e-05 Score=108.65 Aligned_cols=21 Identities=33% Similarity=0.490 Sum_probs=18.0
Q ss_pred EEEEeecCCCCChhHHHHHHh
Q 001482 72 GVVSVCGRARQGKSFILNQLL 92 (1070)
Q Consensus 72 ~vvsv~G~~r~GKS~lln~l~ 92 (1070)
++.+|+||.|+|||+||..|.
T Consensus 24 ~~~~i~G~NGsGKS~ildAi~ 44 (1164)
T TIGR02169 24 GFTVISGPNGSGKSNIGDAIL 44 (1164)
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 367889999999999999763
No 19
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=99.37 E-value=9.5e-06 Score=105.11 Aligned_cols=178 Identities=19% Similarity=0.227 Sum_probs=74.2
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001482 513 RSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKN 592 (1070)
Q Consensus 513 ~~~l~~~l~~~~~~l~~L~k~le~~e~~~~e~~~~le~~i~~~kk~~~e~~~~i~~L~~~~~~Le~~~~~l~~eLe~~~~ 592 (1070)
+..+..++..+.+.+..+++.++.......++...++..+..++..++++...+..+...+..+...+..+..++..+..
T Consensus 800 k~~~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k 879 (1822)
T KOG4674|consen 800 KDKCESRIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELEK 879 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555443333322222223333333334444444444444444444444444444444444433
Q ss_pred HHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001482 593 EISDWKRKYDQVLT--------KQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAA 664 (1070)
Q Consensus 593 el~e~k~k~e~~~~--------el~~~~~~l~~Ei~~Lk~~l~~le~~l~~l~~e~q~lq~el~e~k~~le~e~~elk~~ 664 (1070)
.+...+.++..+.. .+.........++..++.++......+...+........-+...+..++.-..++.+.
T Consensus 880 ~l~~~~~~~~~l~~~~~~~d~~~~~~~Lr~~~eq~~~l~~~L~~a~s~i~~yqe~~~s~eqsl~~~ks~lde~~~~~ea~ 959 (1822)
T KOG4674|consen 880 RLKSAKTQLLNLDSKSSNEDATILEDTLRKELEEITDLKEELTDALSQIREYQEEYSSLEQSLESVKSELDETRLELEAK 959 (1822)
T ss_pred HHHHhHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 33333322222111 0111122344455555666666666665555555555555555555444444333333
Q ss_pred HHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 001482 665 LEK---AAIVQERTSKEMQQREDVLREEF 690 (1070)
Q Consensus 665 le~---~~~~le~~~~~l~~~l~~lr~el 690 (1070)
++. ....++..+..++.++..++.++
T Consensus 960 ie~~~~k~tslE~~ls~L~~~~~~l~~e~ 988 (1822)
T KOG4674|consen 960 IESLHKKITSLEEELSELEKEIENLREEL 988 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 322 12333333444444444444333
No 20
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=99.35 E-value=4.5e-06 Score=102.52 Aligned_cols=26 Identities=27% Similarity=0.358 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001482 896 STVKKLEDLLESERRSRAAANAMAER 921 (1070)
Q Consensus 896 ~~i~~le~~Le~er~~~~ea~~r~~~ 921 (1070)
+.++.+...++..++.+..+...+..
T Consensus 514 s~i~~l~I~lEk~rek~~kl~~ql~k 539 (775)
T PF10174_consen 514 SEIERLEIELEKKREKHEKLEKQLEK 539 (775)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 34455555555555555544444443
No 21
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=99.35 E-value=1.1e-13 Score=174.05 Aligned_cols=430 Identities=21% Similarity=0.298 Sum_probs=0.0
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhH--------------HHHHHHhHHHHH-----
Q 001482 493 SSEGPILDLVKRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYK--------------SEYLKRYDDAIN----- 553 (1070)
Q Consensus 493 ~le~~~~~Lc~r~~~~~~~~~~~l~~~l~~~~~~l~~L~k~le~~e~~~--------------~e~~~~le~~i~----- 553 (1070)
.+...+.+ .++.++.....+..|..+++.+.++++.|+.++++...++ ..|+++|+..+.
T Consensus 240 ~L~~qLee-lk~~leeEtr~k~~L~~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~~~Ee 318 (859)
T PF01576_consen 240 SLESQLEE-LKRQLEEETRAKQALEKQLRQLEHELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEAEQRTEE 318 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHh-hHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHH
Confidence 45556666 7778888877788888888888888888888887666544 556667763221
Q ss_pred --HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHH-----
Q 001482 554 --DK----KKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEIS----------DWKRKYDQVLTKQKAME----- 612 (1070)
Q Consensus 554 --~~----kk~~~e~~~~i~~L~~~~~~Le~~~~~l~~eLe~~~~el~----------e~k~k~e~~~~el~~~~----- 612 (1070)
.. .+.+.++...+..++..+..++..+..|..+++++..++. ...++++...++.+...
T Consensus 319 lEeaKKkL~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~ 398 (859)
T PF01576_consen 319 LEEAKKKLERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQA 398 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 22 2333366666777777777777666666666666653222 22233333333332221
Q ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHH
Q 001482 613 ---------DQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEW-----------------KRKYGVAVREAKAALE 666 (1070)
Q Consensus 613 ---------~~l~~Ei~~Lk~~l~~le~~l~~l~~e~q~lq~el~e~-----------------k~~le~e~~elk~~le 666 (1070)
..+.+++..|+..++++...+..+.+..+.++.++.++ ++.++.++.+++..++
T Consensus 399 e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE~e~~El~~~le 478 (859)
T PF01576_consen 399 ERDAAQREARELETELFKLKNELEELQEQLEELERENKQLQDELEDLTSQLDDAGKSVHELEKAKRRLEQEKEELQEQLE 478 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 23788888888888888888887777777666665544 3444555555555555
Q ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001482 667 KAAIVQERT---SKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLET 743 (1070)
Q Consensus 667 ~~~~~le~~---~~~l~~~l~~lr~ele~~i~e~e~ei~el~~kie~~e~~l~~l~~el~e~e~ki~~~e~e~~~l~~ei 743 (1070)
.+...++.. .-.++..+..++.++++.+..++++++..+..+ ...|..++..|..-......+....++++.+|
T Consensus 479 E~E~~l~~~E~~~lRl~~el~~~r~e~er~l~eKeeE~E~~Rr~~---qr~l~~le~~LE~E~k~r~~~~r~kkKLE~~l 555 (859)
T PF01576_consen 479 EAEDALEAEEQKKLRLQVELQQLRQEIERELQEKEEEFEETRRNH---QRQLESLEAELEEERKERAEALREKKKLESDL 555 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhh---HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 554444333 236778888899999999999999998887655 45666666666432222233556778888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 001482 744 KELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEF 823 (1070)
Q Consensus 744 ~~l~~~le~~~~~i~~le~~l~~le~e~~~le~~l~~~~~~~ee~~e~l~~~e~e~~~~~e~~~~l~~e~~~a~~ek~~~ 823 (1070)
.++...++..+.....+.+.+..+...+..++..+.......+++...+..++..+..+...+..++..+..+....+.+
T Consensus 556 ~eLe~~ld~~n~~~~e~~k~~kk~q~qlkdlq~~lee~~~~~~~~~~~~~~~e~r~~~l~~elee~~~~~~~a~r~rk~a 635 (859)
T PF01576_consen 556 NELEIQLDHANRANEEAQKQLKKLQAQLKDLQRELEEAQRAREELREQLAVSERRLRALQAELEELREALEQAERARKQA 635 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888888888888888888888888877777777777777777777777777777777776666665555544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 001482 824 ENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSKVALLEARVEEREKEIESLLESNNEQRASTVKKLED 903 (1070)
Q Consensus 824 q~~~~e~~~~ie~l~~~i~~Le~e~~~l~~el~~l~~~~~~~~~~~~~le~~v~ele~eie~L~~~~~e~r~~~i~~le~ 903 (1070)
.....+....+..+......+..++..++.++..+...+.+..+....+..+..... ..+..+..
T Consensus 636 E~el~e~~~~~~~l~~~~~~l~~~kr~le~~i~~l~~eleE~~~~~~~~~ek~kka~---------------~~~~~l~~ 700 (859)
T PF01576_consen 636 ESELDELQERLNELTSQNSSLSEEKRKLEAEIQQLEEELEEEQSEAEAAEEKAKKAQ---------------AQAAQLAE 700 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH---------------hHHHHHHH
Confidence 444444444444444444444444444444444444333333322222222222222 23334555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001482 904 LLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQELT 941 (1070)
Q Consensus 904 ~Le~er~~~~ea~~r~~~L~~ql~~~~~~l~~le~el~ 941 (1070)
+|..++.....+......|..++..++..|+.+++...
T Consensus 701 eL~~Eq~~~~~le~~k~~LE~q~keLq~rl~e~E~~~~ 738 (859)
T PF01576_consen 701 ELRQEQDHNQHLEKEKKALERQVKELQARLEEAEQSAL 738 (859)
T ss_dssp --------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 66666666666666667777777777777776665433
No 22
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.32 E-value=3.4e-05 Score=102.26 Aligned_cols=21 Identities=29% Similarity=0.521 Sum_probs=18.7
Q ss_pred EEEEeecCCCCChhHHHHHHh
Q 001482 72 GVVSVCGRARQGKSFILNQLL 92 (1070)
Q Consensus 72 ~vvsv~G~~r~GKS~lln~l~ 92 (1070)
++-+|+||.|||||-++..|.
T Consensus 25 ~~t~IvGPNGSGKSNI~DAi~ 45 (1163)
T COG1196 25 GFTAIVGPNGSGKSNIVDAIR 45 (1163)
T ss_pred CCeEEECCCCCchHHHHHHHH
Confidence 467899999999999999875
No 23
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.30 E-value=2.9e-05 Score=102.89 Aligned_cols=47 Identities=6% Similarity=0.066 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001482 898 VKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQELTKAR 944 (1070)
Q Consensus 898 i~~le~~Le~er~~~~ea~~r~~~L~~ql~~~~~~l~~le~el~~~~ 944 (1070)
+..++..+....+.+.++..|++.|..+++++......++..+.++.
T Consensus 958 i~~lg~VN~~Aiee~e~~~~r~~~l~~~~~dl~~a~~~l~~~i~~~d 1004 (1163)
T COG1196 958 IEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELD 1004 (1163)
T ss_pred HHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445566777788888999999888888887777777776543
No 24
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=99.27 E-value=5.7e-13 Score=167.69 Aligned_cols=364 Identities=21% Similarity=0.291 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001482 557 KLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAA 636 (1070)
Q Consensus 557 k~~~e~~~~i~~L~~~~~~Le~~~~~l~~eLe~~~~el~e~k~k~e~~~~el~~~~~~l~~Ei~~Lk~~l~~le~~l~~l 636 (1070)
..++++...+..+......++..+..+..++..++..+.+..+.+.+ +......+.+++..|..++++.+..+..+
T Consensus 159 ~e~~dL~~~l~~~~k~k~~~Ek~~K~lE~qL~El~~klee~er~~~e----l~~~k~kL~~E~~eL~~qLee~e~~~~~l 234 (859)
T PF01576_consen 159 AELDDLQAQLDSLQKAKQEAEKKRKQLEAQLNELQAKLEESERQRNE----LTEQKAKLQSENSELTRQLEEAESQLSQL 234 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555555555555555555444444444433 33345568888889999999888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhHHHH--
Q 001482 637 REQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQRED---VLREEFSSTLAEKEEEMKEKATKIEHA-- 711 (1070)
Q Consensus 637 ~~e~q~lq~el~e~k~~le~e~~elk~~le~~~~~le~~~~~l~~~l~---~lr~ele~~i~e~e~ei~el~~kie~~-- 711 (1070)
.+....+...+.++++.++.+... +..+......++..+..+...++ ..+..+..++.....++..|+.+++..
T Consensus 235 ~r~k~~L~~qLeelk~~leeEtr~-k~~L~~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~~ 313 (859)
T PF01576_consen 235 QREKSSLESQLEELKRQLEEETRA-KQALEKQLRQLEHELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEAE 313 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhhHHHHHhHhhh-hhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 877778888888888888777653 33333333333333332222221 223355555556666666665554432
Q ss_pred -------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001482 712 -------------EQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKY 778 (1070)
Q Consensus 712 -------------e~~l~~l~~el~e~e~ki~~~e~e~~~l~~ei~~l~~~le~~~~~i~~le~~l~~le~e~~~le~~l 778 (1070)
...+..++..+..+...+..++.....+..++.++...++.....+..++++...+...+..++..+
T Consensus 314 ~~~EelEeaKKkL~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~ 393 (859)
T PF01576_consen 314 QRTEELEEAKKKLERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKV 393 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3456667777777888888888899999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001482 779 KSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRI 858 (1070)
Q Consensus 779 ~~~~~~~ee~~e~l~~~e~e~~~~~e~~~~l~~e~~~a~~ek~~~q~~~~e~~~~ie~l~~~i~~Le~e~~~l~~el~~l 858 (1070)
.......+.+.........++-.+...++.+...+..+.++...++..+.+....+......+..|++.+..|+.+...+
T Consensus 394 ~~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE~e~~El 473 (859)
T PF01576_consen 394 EELQAERDAAQREARELETELFKLKNELEELQEQLEELERENKQLQDELEDLTSQLDDAGKSVHELEKAKRRLEQEKEEL 473 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccchHHHHHHHHHHHHHHHHH
Confidence 88888888888788888888887877777777777777777776666665555556666666666666666666666555
Q ss_pred HHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001482 859 RESELEALSKV------------------ALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAE 920 (1070)
Q Consensus 859 ~~~~~~~~~~~------------------~~le~~v~ele~eie~L~~~~~e~r~~~i~~le~~Le~er~~~~ea~~r~~ 920 (1070)
...+.++...+ ..++.++...+.+++.. +++.+ ..|..|+..|+.++..+..+-+...
T Consensus 474 ~~~leE~E~~l~~~E~~~lRl~~el~~~r~e~er~l~eKeeE~E~~--Rr~~q--r~l~~le~~LE~E~k~r~~~~r~kk 549 (859)
T PF01576_consen 474 QEQLEEAEDALEAEEQKKLRLQVELQQLRQEIERELQEKEEEFEET--RRNHQ--RQLESLEAELEEERKERAEALREKK 549 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH--HHhhH--HHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 54433333332 23344444455555544 22222 2556677777776666665554444
Q ss_pred HHHHHHHHH
Q 001482 921 RLSLEVQSA 929 (1070)
Q Consensus 921 ~L~~ql~~~ 929 (1070)
.|..++..+
T Consensus 550 KLE~~l~eL 558 (859)
T PF01576_consen 550 KLESDLNEL 558 (859)
T ss_dssp ---------
T ss_pred HHHHHHHHH
Confidence 444444333
No 25
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=99.25 E-value=6.1e-05 Score=97.93 Aligned_cols=20 Identities=30% Similarity=0.587 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 001482 432 EADIRCSSAIQSMERKLRAA 451 (1070)
Q Consensus 432 ~s~~~C~~~~~~l~~~l~~~ 451 (1070)
+....|...|..++..|+..
T Consensus 798 ~~k~~~e~~i~eL~~el~~l 817 (1822)
T KOG4674|consen 798 ATKDKCESRIKELERELQKL 817 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34457877776666665543
No 26
>PRK01156 chromosome segregation protein; Provisional
Probab=99.24 E-value=6.7e-05 Score=97.52 Aligned_cols=21 Identities=29% Similarity=0.536 Sum_probs=19.3
Q ss_pred EEEEeecCCCCChhHHHHHHh
Q 001482 72 GVVSVCGRARQGKSFILNQLL 92 (1070)
Q Consensus 72 ~vvsv~G~~r~GKS~lln~l~ 92 (1070)
+|..|+|+.|+|||+|+.+|.
T Consensus 24 gi~~I~G~NGsGKSsileAI~ 44 (895)
T PRK01156 24 GINIITGKNGAGKSSIVDAIR 44 (895)
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 588999999999999999876
No 27
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=99.22 E-value=9.7e-05 Score=98.04 Aligned_cols=19 Identities=26% Similarity=0.581 Sum_probs=16.8
Q ss_pred EEeecCCCCChhHHHHHHh
Q 001482 74 VSVCGRARQGKSFILNQLL 92 (1070)
Q Consensus 74 vsv~G~~r~GKS~lln~l~ 92 (1070)
|.|+|-.|+||||||..|+
T Consensus 20 t~i~GTNG~GKTTlLRlip 38 (1201)
T PF12128_consen 20 THICGTNGVGKTTLLRLIP 38 (1201)
T ss_pred eeeecCCCCcHHHHHHHHH
Confidence 5678999999999999975
No 28
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=99.22 E-value=2.9e-05 Score=95.59 Aligned_cols=39 Identities=21% Similarity=0.203 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHhhhhhhh
Q 001482 919 AERLSLEVQSAQAKLDEMQQELTKARLNETALGSKLRAV 957 (1070)
Q Consensus 919 ~~~L~~ql~~~~~~l~~le~el~~~~~~~~~l~~~l~~~ 957 (1070)
...-+.+++.+...|..++.+-......+..|.+.|+.+
T Consensus 564 ~~kaq~EVERLl~~L~~~E~EK~~ke~ki~~LekeLek~ 602 (775)
T PF10174_consen 564 SEKAQAEVERLLDILREAENEKNDKEKKIGELEKELEKA 602 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 333444555556666666666665566666677666553
No 29
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=99.20 E-value=1.6e-05 Score=95.67 Aligned_cols=49 Identities=20% Similarity=0.365 Sum_probs=24.5
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 001482 517 MLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNL 569 (1070)
Q Consensus 517 ~~~l~~~~~~l~~L~k~le~~e~~~~e~~~~le~~i~~~kk~~~e~~~~i~~L 569 (1070)
..+|.....++..+++++...+..+......|+ ..++.++++...|...
T Consensus 33 e~eL~~~qeel~~~k~~l~~~E~~k~~~l~ELe----~akr~veel~~kLe~~ 81 (522)
T PF05701_consen 33 ETELEKAQEELAKLKEQLEAAEREKAQALSELE----SAKRTVEELKLKLEKA 81 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 344555566666666666665555533333333 3444444444444433
No 30
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.19 E-value=1.2e-06 Score=117.56 Aligned_cols=28 Identities=7% Similarity=0.117 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001482 573 NISLREKSSSLSKTVDSLKNEISDWKRK 600 (1070)
Q Consensus 573 ~~~Le~~~~~l~~eLe~~~~el~e~k~k 600 (1070)
...+..++......++.....+.++...
T Consensus 165 ~~~~~~~~~~~~~~l~~~~~~l~el~~~ 192 (1164)
T TIGR02169 165 VAEFDRKKEKALEELEEVEENIERLDLI 192 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445455555555555544444433333
No 31
>PRK01156 chromosome segregation protein; Provisional
Probab=99.18 E-value=0.00012 Score=95.31 Aligned_cols=8 Identities=13% Similarity=0.206 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 001482 461 NVVKVLDG 468 (1070)
Q Consensus 461 ~~~~~l~~ 468 (1070)
.|...++.
T Consensus 163 ~~~~~~~~ 170 (895)
T PRK01156 163 SLERNYDK 170 (895)
T ss_pred HHHHHHHH
Confidence 34333333
No 32
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=99.18 E-value=9.1e-05 Score=93.48 Aligned_cols=84 Identities=18% Similarity=0.177 Sum_probs=56.9
Q ss_pred CCccHHHHHHHHHHHHHHHHcccCCCcchhhHHHHh----hhccccchHHHHHHHHHHHHH--HHHHHHHHHhhHHHHHH
Q 001482 455 SDASIDNVVKVLDGLISEYETSCHGPGKWQKLATFL----QQSSEGPILDLVKRLIDQIGS--ERSSLMLKYRSIEDNMK 528 (1070)
Q Consensus 455 ~~~~~~~~~~~l~~l~~eY~~~~~gp~k~~~l~~fl----~k~le~~~~~Lc~r~~~~~~~--~~~~l~~~l~~~~~~l~ 528 (1070)
..+.++.|.+.++.+..++.....+.+..+.-..|+ ..+...+||++|.|.|..... -...+...+....++..
T Consensus 629 ~sgt~~~~~~~le~l~~eie~~rk~l~~lq~~s~~Y~k~Ie~~~~~~~CplC~r~f~~eee~ef~~~l~~~i~s~p~~~~ 708 (1294)
T KOG0962|consen 629 ESGTIDEYLDLLERLKGEIEKARKDLAMLQGRSALYRKFIEIACRSHCCPLCQRSFTTEEEVEFIKKLESKIDSAPDKLE 708 (1294)
T ss_pred hccchhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhccCCCccCCccchHHHHHHHHHHHHHHhccchhHH
Confidence 345788999999999999999888777665555555 455566999999999988752 11244444455555555
Q ss_pred HHHHHHHHHH
Q 001482 529 LLKKQLEDSE 538 (1070)
Q Consensus 529 ~L~k~le~~e 538 (1070)
.+...+...+
T Consensus 709 ~~~~~l~k~~ 718 (1294)
T KOG0962|consen 709 EAEVELSKEE 718 (1294)
T ss_pred HHHHHHHHHH
Confidence 5555554333
No 33
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=99.16 E-value=0.00017 Score=95.70 Aligned_cols=47 Identities=6% Similarity=0.039 Sum_probs=26.9
Q ss_pred HHHHHHHHhccCCccccCCcccChhHHHHHHHHHHHHHhC--CCCCCchhHHHHHH
Q 001482 298 LDALTKFVFERTRPKQVGATVLTGPVLIGITESYLDAINN--GAVPTISSSWQSVE 351 (1070)
Q Consensus 298 ~~~l~~~i~~~~~pK~~~g~~ltg~~l~~~~~~~v~ain~--~~~p~~~~~~~~~~ 351 (1070)
...|+.-|+++.. .+ .-.++.|..|+..| ++-. ..++.|+.+..+|.
T Consensus 143 ~~eYR~IIqn~~~--~l---~~~~~~lr~la~~f--SL~~s~~~~~hI~kli~~vl 191 (1201)
T PF12128_consen 143 TSEYRAIIQNNRS--LL---GKDRKELRALAARF--SLCESSHQYQHIEKLINAVL 191 (1201)
T ss_pred HHHHHHHHcCCCc--cc---cccchHHHHHHHhc--CcCCCcccccChHHHHHHHH
Confidence 4567777765432 11 12455677776666 4533 35888887666553
No 34
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=99.16 E-value=9.5e-07 Score=100.22 Aligned_cols=186 Identities=19% Similarity=0.318 Sum_probs=124.6
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001482 505 LIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLS 584 (1070)
Q Consensus 505 ~~~~~~~~~~~l~~~l~~~~~~l~~L~k~le~~e~~~~e~~~~le~~i~~~kk~~~e~~~~i~~L~~~~~~Le~~~~~l~ 584 (1070)
.+......+..+..+++.++.....|..++..+.... ... .......|..++..++..+..+......+.
T Consensus 5 eL~~LNdRla~YIekVr~LE~~N~~Le~~i~~~~~~~-------~~~---~~~~~~~ye~el~~lr~~id~~~~eka~l~ 74 (312)
T PF00038_consen 5 ELQSLNDRLASYIEKVRFLEQENKRLESEIEELREKK-------GEE---VSRIKEMYEEELRELRRQIDDLSKEKARLE 74 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcc-------ccc---CcccccchhhHHHHhHHhhhhHHHHhhHHh
Confidence 3344444566677777777777777777775444331 100 112223467788888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001482 585 KTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAA 664 (1070)
Q Consensus 585 ~eLe~~~~el~e~k~k~e~~~~el~~~~~~l~~Ei~~Lk~~l~~le~~l~~l~~e~q~lq~el~e~k~~le~e~~elk~~ 664 (1070)
.+++.+..++.+++.+++.... ....++.++..+++.++........++.+++.++.++..++..++.++.+++..
T Consensus 75 ~e~~~l~~e~~~~r~k~e~e~~----~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~heeEi~~L~~~ 150 (312)
T PF00038_consen 75 LEIDNLKEELEDLRRKYEEELA----ERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHEEEIEELREQ 150 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT
T ss_pred hhhhhHHHHHHHHHHHHHHHHH----HHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhc
Confidence 9999999999999999988543 445688899999999999988888999999999999999999999999988766
Q ss_pred HHH-HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001482 665 LEK-AAIVQERT-SKEMQQREDVLREEFSSTLAEKEEEMKEK 704 (1070)
Q Consensus 665 le~-~~~~le~~-~~~l~~~l~~lr~ele~~i~e~e~ei~el 704 (1070)
+.. ........ ..++...+..++.+++..+.....++..+
T Consensus 151 ~~~~~~~e~~~~~~~dL~~~L~eiR~~ye~~~~~~~~e~e~~ 192 (312)
T PF00038_consen 151 IQSSVTVEVDQFRSSDLSAALREIRAQYEEIAQKNREELEEW 192 (312)
T ss_dssp ----------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccceeecccccccchhhhhhHHHHHHHHHhhhhhhhhhh
Confidence 541 11111111 12556666667766666666555555444
No 35
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=99.13 E-value=6.8e-05 Score=87.89 Aligned_cols=117 Identities=13% Similarity=0.147 Sum_probs=65.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 001482 547 RYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKS-- 624 (1070)
Q Consensus 547 ~le~~i~~~kk~~~e~~~~i~~L~~~~~~Le~~~~~l~~eLe~~~~el~e~k~k~e~~~~el~~~~~~l~~Ei~~Lk~-- 624 (1070)
.|.+.+..+.......+.+|..|+..+..++.++..++..+..++.++.+-+-.++...+.+....++|...-.+...
T Consensus 89 iyRrdv~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf~~~ 168 (1265)
T KOG0976|consen 89 IYRRDVNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIFMIG 168 (1265)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHH
Confidence 344333334444445666777777777777777777777776666666666655655555544444444333333332
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001482 625 -RSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKA 663 (1070)
Q Consensus 625 -~l~~le~~l~~l~~e~q~lq~el~e~k~~le~e~~elk~ 663 (1070)
.+......+..++.+.+.+-.+.+..++.+......++.
T Consensus 169 ~~L~nk~~~lt~~~~q~~tkl~e~~~en~~le~k~~k~~e 208 (1265)
T KOG0976|consen 169 EDLHDKNEELNEFNMEFQTKLAEANREKKALEEKLEKFKE 208 (1265)
T ss_pred HHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222333334455566666666666666666655555443
No 36
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.12 E-value=0.00013 Score=89.95 Aligned_cols=40 Identities=23% Similarity=0.361 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhH
Q 001482 502 VKRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYK 541 (1070)
Q Consensus 502 c~r~~~~~~~~~~~l~~~l~~~~~~l~~L~k~le~~e~~~ 541 (1070)
|+..+.+...+.......++.+..++..++++++......
T Consensus 389 ~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~ 428 (1293)
T KOG0996|consen 389 LKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKK 428 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 5666666655555666667777777777777776555444
No 37
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=99.10 E-value=0.00016 Score=89.30 Aligned_cols=35 Identities=17% Similarity=0.296 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHcccCCCcch---hhHHHHhhhc
Q 001482 459 IDNVVKVLDGLISEYETSCHGPGKW---QKLATFLQQS 493 (1070)
Q Consensus 459 ~~~~~~~l~~l~~eY~~~~~gp~k~---~~l~~fl~k~ 493 (1070)
++.-.+.++.++.-|.-...+|.-| .....|+..+
T Consensus 157 VStKk~dl~~vv~~f~I~veNP~~~lsQD~aR~FL~~~ 194 (1074)
T KOG0250|consen 157 VSTKKEDLDTVVDHFNIQVENPMFVLSQDAARSFLANS 194 (1074)
T ss_pred ccccHHHHHHHHHHhCcCCCCcchhhcHHHHHHHHhcC
Confidence 3334455666667776666777655 5556666443
No 38
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=99.04 E-value=0.0002 Score=86.44 Aligned_cols=38 Identities=26% Similarity=0.343 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001482 569 LQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLT 606 (1070)
Q Consensus 569 L~~~~~~Le~~~~~l~~eLe~~~~el~e~k~k~e~~~~ 606 (1070)
.+.++.....++.....+|+..+.++..++..++....
T Consensus 114 ~k~ele~~~~q~~~~~~eL~~~k~EL~~lr~e~~~~~~ 151 (522)
T PF05701_consen 114 WKAELESAREQYASAVAELDSVKQELEKLRQELASALD 151 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555566666666666666666666666665543
No 39
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=99.04 E-value=3.9e-05 Score=89.59 Aligned_cols=36 Identities=22% Similarity=0.252 Sum_probs=24.8
Q ss_pred ccCCceeeeecccccccccccccCChHHHHHHhccCCC
Q 001482 204 QFSPIFVWLLRDFYLDLVEDNRKITPRDYLEIALRPVQ 241 (1070)
Q Consensus 204 ~~~P~~~wlvRD~~~~~~~~g~~~t~~~yLe~~L~~~~ 241 (1070)
.+.|.|.|-=+||..-+.-+ ..|..+|.--+|.+.+
T Consensus 27 tlt~~~~ps~~DWIGiFKVG--w~s~rdY~Tf~Wa~~p 62 (546)
T PF07888_consen 27 TLTPGFHPSSKDWIGIFKVG--WSSTRDYYTFVWAPVP 62 (546)
T ss_pred ecCCCCCCCCCCeeEEeecC--CCchhheeeEEeeccC
Confidence 45678889999998655432 3467788777776654
No 40
>KOG4181 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.02 E-value=2.5e-09 Score=114.32 Aligned_cols=88 Identities=25% Similarity=0.331 Sum_probs=59.8
Q ss_pred CCCCeeEEEeCCCCceeeCHHHHHHHHccCCCEEEEEeecCCCCChhHHHHHHhCCC-------CCc-cccCCC----Cc
Q 001482 39 PARPIRLVYCDEKGKFRMDPEAVAALQLVKEPIGVVSVCGRARQGKSFILNQLLGRS-------SGF-QVASTH----RP 106 (1070)
Q Consensus 39 ~~~pi~lv~~d~~~~~~~~~eal~~l~~~~~~v~vvsv~G~~r~GKS~lln~l~~~~-------~gF-~~~~~~----~~ 106 (1070)
+.++++||. +.|.| +..|.++|... .++.||||+|++++|||+|||.|.+.+ -.| ++++.. ..
T Consensus 161 Mk~s~~li~--d~g~~--~d~a~~ll~~~-tdf~VIgvlG~QgsGKStllslLaans~~~dyr~yvFRpvS~Ea~E~~~~ 235 (491)
T KOG4181|consen 161 MKRSTPLIV--DNGIF--NDNARKLLHKT-TDFTVIGVLGGQGSGKSTLLSLLAANSLDYDYRQYVFRPVSPEADECIFA 235 (491)
T ss_pred ccCCcceee--cccch--hhHHHHHhhcC-CCeeEEEeecCCCccHHHHHHHHhccChHHhhHHHhcccCChhhhhhhcc
Confidence 445777773 33444 88999998776 789999999999999999999999853 235 233322 23
Q ss_pred ccceEEeeccccccccCCCCceeEEEeeccccccc
Q 001482 107 CTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAY 141 (1070)
Q Consensus 107 ~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~~~ 141 (1070)
.|.||-++. |. -.+||+||+.+-++
T Consensus 236 qt~~Id~~i---------~q-~~i~fldtqpl~sf 260 (491)
T KOG4181|consen 236 QTHKIDPNI---------GQ-KSILFLDTQPLQSF 260 (491)
T ss_pred ceecccccc---------cc-ceEEeeccccccch
Confidence 467776553 22 24667777655443
No 41
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=99.02 E-value=2.6e-06 Score=99.18 Aligned_cols=99 Identities=19% Similarity=0.263 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhH----HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001482 504 RLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYK----SEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREK 579 (1070)
Q Consensus 504 r~~~~~~~~~~~l~~~l~~~~~~l~~L~k~le~~e~~~----~e~~~~le~~i~~~kk~~~e~~~~i~~L~~~~~~Le~~ 579 (1070)
+.+..+.+....+..+++.++.+...|.-++..+.... ...+..|+.++...++.+++.......++.++..++.+
T Consensus 42 ~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e 121 (546)
T KOG0977|consen 42 KELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITKLREE 121 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 33333334455666667777777777777776666542 45677889888888999888888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001482 580 SSSLSKTVDSLKNEISDWKRKYD 602 (1070)
Q Consensus 580 ~~~l~~eLe~~~~el~e~k~k~e 602 (1070)
...+...+++..+.+.....+..
T Consensus 122 ~~elr~~~~~~~k~~~~~re~~~ 144 (546)
T KOG0977|consen 122 LKELRKKLEKAEKERRGAREKLD 144 (546)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHH
Confidence 88888888777655444443333
No 42
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.98 E-value=8.8e-05 Score=86.75 Aligned_cols=43 Identities=23% Similarity=0.210 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001482 901 LEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQELTKA 943 (1070)
Q Consensus 901 le~~Le~er~~~~ea~~r~~~L~~ql~~~~~~l~~le~el~~~ 943 (1070)
...+|.+.+..+.-+.+..+.|+.+.+.+...|..|+..+..+
T Consensus 415 ~~rel~Elks~lrv~qkEKEql~~EkQeL~~yi~~Le~r~~~~ 457 (546)
T PF07888_consen 415 NRRELQELKSSLRVAQKEKEQLQEEKQELLEYIERLEQRLDKV 457 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344445566667777778888888888888888888777733
No 43
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=98.96 E-value=0.00032 Score=82.47 Aligned_cols=42 Identities=21% Similarity=0.226 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHhhhhh
Q 001482 914 AANAMAERLSLEVQSAQAKLDEMQQELTKARLNETALGSKLR 955 (1070)
Q Consensus 914 ea~~r~~~L~~ql~~~~~~l~~le~el~~~~~~~~~l~~~l~ 955 (1070)
.+...++.|+++++.-...++.|..++.+++++....-++|.
T Consensus 480 KVeqe~emlKaen~rqakkiefmkEeiQethldyR~els~lA 521 (1265)
T KOG0976|consen 480 KVEQEYEMLKAENERQAKKIEFMKEEIQETHLDYRSELSELA 521 (1265)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455677788888888888888888888877776654444443
No 44
>PRK04863 mukB cell division protein MukB; Provisional
Probab=98.89 E-value=0.0017 Score=86.35 Aligned_cols=24 Identities=21% Similarity=0.252 Sum_probs=21.1
Q ss_pred EEEEeecCCCCChhHHHHHHhCCC
Q 001482 72 GVVSVCGRARQGKSFILNQLLGRS 95 (1070)
Q Consensus 72 ~vvsv~G~~r~GKS~lln~l~~~~ 95 (1070)
.+++|+|+.|+||||+|+.|.+..
T Consensus 28 ~~~~l~G~NGaGKSTll~ai~~~l 51 (1486)
T PRK04863 28 LVTTLSGGNGAGKSTTMAAFVTAL 51 (1486)
T ss_pred CeEEEECCCCCCHHHHHHHHHccc
Confidence 588999999999999999987653
No 45
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=98.89 E-value=0.00076 Score=82.62 Aligned_cols=110 Identities=19% Similarity=0.258 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---------hHHHHHHHHHHH
Q 001482 831 MAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSKVALLEARVEEREKEIESLLES---------NNEQRASTVKKL 901 (1070)
Q Consensus 831 ~~~ie~l~~~i~~Le~e~~~l~~el~~l~~~~~~~~~~~~~le~~v~ele~eie~L~~~---------~~e~r~~~i~~l 901 (1070)
...+..+..++..++.+...+...+..++..+.++...+..+...+......++.. .- ........+..+
T Consensus 382 ~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~-~lpgip~~y~~~~~~~~~~i~~l 460 (569)
T PRK04778 382 QEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYLEKS-NLPGLPEDYLEMFFEVSDEIEAL 460 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCCCcHHHHHHHHHHHHHHHHH
Confidence 34455555555556666666666666666555555555555544444444333321 00 000011122222
Q ss_pred HHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001482 902 EDL-------LESERRSRAAANAMAERLSLEVQSAQAKLDEMQQELT 941 (1070)
Q Consensus 902 e~~-------Le~er~~~~ea~~r~~~L~~ql~~~~~~l~~le~el~ 941 (1070)
... +......+.++..++..|..+...+......++.-+.
T Consensus 461 ~~~L~~g~VNm~ai~~e~~e~~~~~~~L~~q~~dL~~~a~~lE~~Iq 507 (569)
T PRK04778 461 AEELEEKPINMEAVNRLLEEATEDVETLEEETEELVENATLTEQLIQ 507 (569)
T ss_pred HHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 2333446677777777777776666555555444333
No 46
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.80 E-value=7.4e-06 Score=88.63 Aligned_cols=52 Identities=19% Similarity=0.337 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001482 835 ERVQRQIESLERQKTDLTNEVNRIRESELEALSKVALLEARVEEREKEIESL 886 (1070)
Q Consensus 835 e~l~~~i~~Le~e~~~l~~el~~l~~~~~~~~~~~~~le~~v~ele~eie~L 886 (1070)
+.++..+..|+.++..+...+..+.........+...++.+|..+...+...
T Consensus 137 e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkea 188 (237)
T PF00261_consen 137 EAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEA 188 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444443333333333333344444443333333
No 47
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=98.79 E-value=2.4e-05 Score=91.33 Aligned_cols=182 Identities=16% Similarity=0.264 Sum_probs=106.8
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001482 494 SEGPILDLVKRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGEN 573 (1070)
Q Consensus 494 le~~~~~Lc~r~~~~~~~~~~~l~~~l~~~~~~l~~L~k~le~~e~~~~e~~~~le~~i~~~kk~~~e~~~~i~~L~~~~ 573 (1070)
++..+.. |++.+++....+..+...+..+.++++.++..++..++.......++. .+...+.+++.++..++..+
T Consensus 90 ye~El~~-ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~----~~~~~l~~leAe~~~~krr~ 164 (546)
T KOG0977|consen 90 YEAELAT-ARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLD----DYLSRLSELEAEINTLKRRI 164 (546)
T ss_pred hhhhHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHH----HHhhhhhhhhhHHHHHHHHH
Confidence 3445555 888999998889999999999999998888888665544322221111 12222233444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001482 574 ISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRK 653 (1070)
Q Consensus 574 ~~Le~~~~~l~~eLe~~~~el~e~k~k~e~~~~el~~~~~~l~~Ei~~Lk~~l~~le~~l~~l~~e~q~lq~el~e~k~~ 653 (1070)
..++.+...+..+...+..++...+..+++ ...--..++..+++|..+|+.++..
T Consensus 165 ~~le~e~~~Lk~en~rl~~~l~~~r~~ld~-------------------------Etllr~d~~n~~q~Lleel~f~~~~ 219 (546)
T KOG0977|consen 165 KALEDELKRLKAENSRLREELARARKQLDD-------------------------ETLLRVDLQNRVQTLLEELAFLKRI 219 (546)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHH-------------------------HHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 444444444444444444433333333332 2222234555667888888999988
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001482 654 YGVAVREAKAALEKAAI-VQERT-SKEMQQREDVLREEFSSTLAEKEEEMKEKA 705 (1070)
Q Consensus 654 le~e~~elk~~le~~~~-~le~~-~~~l~~~l~~lr~ele~~i~e~e~ei~el~ 705 (1070)
+..++.+.......... ..... ..+|...+.++|++++......+++++.+.
T Consensus 220 h~~eI~e~~~~~~rd~t~~~r~~F~~eL~~Ai~eiRaqye~~~~~nR~diE~~Y 273 (546)
T KOG0977|consen 220 HKQEIEEERRKARRDTTADNREYFKNELALAIREIRAQYEAISRQNRKDIESWY 273 (546)
T ss_pred cHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 88888876544433221 11111 136777788888888888887777777663
No 48
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=98.75 E-value=0.0013 Score=76.57 Aligned_cols=37 Identities=16% Similarity=0.101 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001482 907 SERRSRAAANAMAERLSLEVQSAQAKLDEMQQELTKA 943 (1070)
Q Consensus 907 ~er~~~~ea~~r~~~L~~ql~~~~~~l~~le~el~~~ 943 (1070)
..+.....+..|...++.++..++..++.++.....+
T Consensus 715 ~l~~~le~e~nr~~~~~~e~~~~qeE~~~l~~r~~~l 751 (961)
T KOG4673|consen 715 QLSKSLEKERNRAAENRQEYLAAQEEADTLEGRANQL 751 (961)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444555555544444433
No 49
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.73 E-value=0.0022 Score=77.85 Aligned_cols=32 Identities=31% Similarity=0.390 Sum_probs=21.2
Q ss_pred hhHhhHHHHHHHHHhcCchhhhhhccCCChHHHH
Q 001482 1026 YTKFTVQKLKQELTKHNFGAELLQLRNPNKKEIL 1059 (1070)
Q Consensus 1026 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1059 (1070)
|...+...|-++| |-+-.+|-++.|-|||.+=
T Consensus 946 y~~~~~~el~kkL--~~~neelk~ys~VNKkAld 977 (1200)
T KOG0964|consen 946 YQDKKSKELMKKL--HRCNEELKGYSNVNKKALD 977 (1200)
T ss_pred hccCCHHHHHHHH--HHHHHHHhhcchhhHHHHH
Confidence 5555555565665 3456788888888888653
No 50
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.73 E-value=0.0022 Score=77.78 Aligned_cols=51 Identities=20% Similarity=0.177 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001482 707 KIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKA 757 (1070)
Q Consensus 707 kie~~e~~l~~l~~el~e~e~ki~~~e~e~~~l~~ei~~l~~~le~~~~~i 757 (1070)
++++....+.++..++.++..+.+.+=++.++++..+..+...+...+..+
T Consensus 447 r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~~~~~L 497 (1200)
T KOG0964|consen 447 RMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIANLEEDLSRAEKNL 497 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444444444455555555555555555555443
No 51
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=98.72 E-value=0.0029 Score=78.53 Aligned_cols=22 Identities=32% Similarity=0.439 Sum_probs=15.5
Q ss_pred CCEEEEEeecCCCCChhHHHHHHh
Q 001482 69 EPIGVVSVCGRARQGKSFILNQLL 92 (1070)
Q Consensus 69 ~~v~vvsv~G~~r~GKS~lln~l~ 92 (1070)
.+|. =|+|+.|||||-+|-.|.
T Consensus 62 ~~vN--fI~G~NGSGKSAIltAl~ 83 (1074)
T KOG0250|consen 62 PRVN--FIVGNNGSGKSAILTALT 83 (1074)
T ss_pred CCce--EeecCCCCcHHHHHHHHH
Confidence 3455 457888888888877764
No 52
>PRK04863 mukB cell division protein MukB; Provisional
Probab=98.72 E-value=0.0043 Score=82.57 Aligned_cols=34 Identities=12% Similarity=0.283 Sum_probs=15.5
Q ss_pred HHHHHHHhhccCCCccHHHHHHHHHHHHHHHHcc
Q 001482 443 SMERKLRAACHSSDASIDNVVKVLDGLISEYETS 476 (1070)
Q Consensus 443 ~l~~~l~~~~~~~~~~~~~~~~~l~~l~~eY~~~ 476 (1070)
.+...|+.+..+...+++...+.+..-+..|..+
T Consensus 212 ~i~~fl~~yll~e~~~v~~~i~~m~~~l~~~r~t 245 (1486)
T PRK04863 212 AITRSLRDYLLPENSGVRKAFQDMEAALRENRMT 245 (1486)
T ss_pred hHHHHHHHHcCCCChhhhHHHHHHHHHHHHHHHH
Confidence 4555566554333333444444444444444443
No 53
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=98.69 E-value=0.0031 Score=77.02 Aligned_cols=134 Identities=18% Similarity=0.299 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH----HHHHHHHHHHHH
Q 001482 828 MERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSKVALLEARVEEREKEIESLLESNN----EQRASTVKKLED 903 (1070)
Q Consensus 828 ~e~~~~ie~l~~~i~~Le~e~~~l~~el~~l~~~~~~~~~~~~~le~~v~ele~eie~L~~~~~----e~r~~~i~~le~ 903 (1070)
......+..+..++..++.+...+...+..++..+..+...+..+...+......++.. +. ..-...+.....
T Consensus 375 S~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek~---nLPGlp~~y~~~~~~~~~ 451 (560)
T PF06160_consen 375 SEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLEKS---NLPGLPEDYLDYFFDVSD 451 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---CCCCCCHHHHHHHHHHHH
Confidence 34456677777888888888888888888888888888877777777777777766633 11 111112222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHhhhhhhhhccccccccc
Q 001482 904 LLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQELTKARLNETALGSKLRAVSHGKRARADD 967 (1070)
Q Consensus 904 ~Le~er~~~~ea~~r~~~L~~ql~~~~~~l~~le~el~~~~~~~~~l~~~l~~~~~~~~~~~~~ 967 (1070)
.+......+.+..--+.....++..+...++.+......+--... |--+ .+.+|-|.|-..
T Consensus 452 ~i~~l~~~L~~~pinm~~v~~~l~~a~~~v~~L~~~t~~li~~A~-L~E~--~iQYaNRYR~~~ 512 (560)
T PF06160_consen 452 EIEELSDELNQVPINMDEVNKQLEEAEDDVETLEEKTEELIDNAT-LAEQ--LIQYANRYRSDN 512 (560)
T ss_pred HHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH--HHHHHhcccCCC
Confidence 222223333332233344444455555555555544443322211 1111 256788887655
No 54
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=98.67 E-value=0.0024 Score=74.99 Aligned_cols=54 Identities=17% Similarity=0.298 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhcchHHHhhhh
Q 001482 901 LEDLLESERRSRAAANAMAERLSLEVQSAQAKLD----EMQQELTKARLNETALGSKL 954 (1070)
Q Consensus 901 le~~Le~er~~~~ea~~r~~~L~~ql~~~~~~l~----~le~el~~~~~~~~~l~~~l 954 (1070)
|...+..+.......+.++..|..+++.++...+ .++.++.+....+.+|...+
T Consensus 620 LKKk~~aE~kq~~~~eikVn~L~~E~e~~kk~~eE~~~~~~keie~K~~~e~~L~~Ev 677 (786)
T PF05483_consen 620 LKKKITAESKQSNVYEIKVNKLQEELENLKKKHEEETDKYQKEIESKSISEEELLGEV 677 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 3333444444445555666666666666555433 33334443344444444333
No 55
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=98.62 E-value=0.0048 Score=75.67 Aligned_cols=50 Identities=12% Similarity=0.187 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001482 554 DKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQ 603 (1070)
Q Consensus 554 ~~kk~~~e~~~~i~~L~~~~~~Le~~~~~l~~eLe~~~~el~e~k~k~e~ 603 (1070)
.+++.+......+...+..++.+.........+|+.++.+...+..-+.+
T Consensus 1236 ~lr~~l~~~~e~L~~~E~~Lsdi~~~~~~a~~~LesLq~~~~~l~~~~ke 1285 (1758)
T KOG0994|consen 1236 SLRRQLQALTEDLPQEEETLSDITNSLPLAGKDLESLQREFNGLLTTYKE 1285 (1758)
T ss_pred HHHHHHHHHHhhhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555544445555555555544444433333
No 56
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=98.62 E-value=0.0032 Score=75.64 Aligned_cols=7 Identities=29% Similarity=0.871 Sum_probs=3.6
Q ss_pred cceEEee
Q 001482 108 TKGLWLW 114 (1070)
Q Consensus 108 t~giw~~ 114 (1070)
..|-|+.
T Consensus 32 A~G~WvG 38 (1243)
T KOG0971|consen 32 AEGKWVG 38 (1243)
T ss_pred ccCceEE
Confidence 3456643
No 57
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=98.61 E-value=0.0051 Score=75.48 Aligned_cols=14 Identities=14% Similarity=0.249 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHhh
Q 001482 438 SSAIQSMERKLRAA 451 (1070)
Q Consensus 438 ~~~~~~l~~~l~~~ 451 (1070)
...+..++.+-...
T Consensus 28 ~~~i~~Le~~k~~l 41 (569)
T PRK04778 28 YKRIDELEERKQEL 41 (569)
T ss_pred HHHHHHHHHHHHHH
Confidence 34455566655543
No 58
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.59 E-value=7.2e-05 Score=80.98 Aligned_cols=90 Identities=21% Similarity=0.283 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001482 864 EALSKVALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQELTKA 943 (1070)
Q Consensus 864 ~~~~~~~~le~~v~ele~eie~L~~~~~e~r~~~i~~le~~Le~er~~~~ea~~r~~~L~~ql~~~~~~l~~le~el~~~ 943 (1070)
.+..++..++..+......+.++ ...........+.++..+......+.++..|++........+...|+.++..+...
T Consensus 138 ~~E~ki~eLE~el~~~~~~lk~l-E~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~ 216 (237)
T PF00261_consen 138 AAESKIKELEEELKSVGNNLKSL-EASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKE 216 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhchhHHHHHHHHHHHHHHHHHh-hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444 22222222333445555556666666677777777777777777777777777766
Q ss_pred hcchHHHhhhh
Q 001482 944 RLNETALGSKL 954 (1070)
Q Consensus 944 ~~~~~~l~~~l 954 (1070)
+.+-..+...|
T Consensus 217 k~~~~~~~~el 227 (237)
T PF00261_consen 217 KEKYKKVQEEL 227 (237)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55554444444
No 59
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=98.59 E-value=0.0023 Score=76.80 Aligned_cols=19 Identities=16% Similarity=0.343 Sum_probs=9.5
Q ss_pred HHHHHhhHHHHHHHHHHHH
Q 001482 516 LMLKYRSIEDNMKLLKKQL 534 (1070)
Q Consensus 516 l~~~l~~~~~~l~~L~k~l 534 (1070)
|..+++.+.++++.++-+.
T Consensus 229 Lr~QvrdLtEkLetlR~kR 247 (1243)
T KOG0971|consen 229 LRAQVRDLTEKLETLRLKR 247 (1243)
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 4444555555555554443
No 60
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.54 E-value=0.0026 Score=72.15 Aligned_cols=41 Identities=15% Similarity=0.246 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001482 734 VEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYL 774 (1070)
Q Consensus 734 ~e~~~l~~ei~~l~~~le~~~~~i~~le~~l~~le~e~~~l 774 (1070)
.....++.++..+...++........++.++..+..++..+
T Consensus 96 ~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl 136 (312)
T PF00038_consen 96 AERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFL 136 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444444444433
No 61
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=98.54 E-value=0.0074 Score=73.69 Aligned_cols=21 Identities=14% Similarity=0.256 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001482 562 YTSRINNLQGENISLREKSSS 582 (1070)
Q Consensus 562 ~~~~i~~L~~~~~~Le~~~~~ 582 (1070)
+...+..++.++..|+.++..
T Consensus 175 L~velAdle~kir~LrqElEE 195 (1195)
T KOG4643|consen 175 LEVELADLEKKIRTLRQELEE 195 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555544433
No 62
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=98.50 E-value=0.011 Score=73.87 Aligned_cols=40 Identities=18% Similarity=0.354 Sum_probs=31.9
Q ss_pred ceeeCHHHHHHHHccC-CCEEEEEeecCCCCChhHHHHHHh
Q 001482 53 KFRMDPEAVAALQLVK-EPIGVVSVCGRARQGKSFILNQLL 92 (1070)
Q Consensus 53 ~~~~~~eal~~l~~~~-~~v~vvsv~G~~r~GKS~lln~l~ 92 (1070)
.++++.+=.++|+.|. +-++=|.||---+|||=|-|-.|-
T Consensus 69 ~lrl~~~DfeilKvIGrGaFGEV~lVr~k~t~~VYAMK~ln 109 (1317)
T KOG0612|consen 69 ELRLKAEDFEILKVIGRGAFGEVALVRHKSTEKVYAMKILN 109 (1317)
T ss_pred HHhCCHHhhHHHHHhcccccceeEEEEeeccccchhHHHhh
Confidence 4677788788888775 678888888888999999887763
No 63
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=98.37 E-value=0.019 Score=70.74 Aligned_cols=105 Identities=14% Similarity=0.123 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001482 713 QCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERC 792 (1070)
Q Consensus 713 ~~l~~l~~el~e~e~ki~~~e~e~~~l~~ei~~l~~~le~~~~~i~~le~~l~~le~e~~~le~~l~~~~~~~ee~~e~l 792 (1070)
.+|..+..+|.+.-..+..++.-+......+.....-+..++.. .+....+....+.+.+-++........++.-|
T Consensus 1511 eqi~~L~~~I~e~v~sL~nVd~IL~~T~~di~ra~~L~s~A~~a----~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~ai 1586 (1758)
T KOG0994|consen 1511 EQIQQLTGEIQERVASLPNVDAILSRTKGDIARAENLQSEAERA----RSRAEDVKGQAEDVVEALEEADVAQGEAQDAI 1586 (1758)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHhhhhhHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555544444444443333222222221 11222222222333333333333334444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 001482 793 KVAEKEAKKATELADRERAEAAAARKGKS 821 (1070)
Q Consensus 793 ~~~e~e~~~~~e~~~~l~~e~~~a~~ek~ 821 (1070)
+.+...+......+.+.+.+...++....
T Consensus 1587 ~~a~~~~~~a~~~l~kv~~~t~~aE~~~~ 1615 (1758)
T KOG0994|consen 1587 QGADRDIRLAQQLLAKVQEETAAAEKLAT 1615 (1758)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444445555555554444443333
No 64
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=98.29 E-value=0.028 Score=68.93 Aligned_cols=28 Identities=18% Similarity=0.407 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001482 761 EREARIMEQDKVYLEQKYKSEFERFEEV 788 (1070)
Q Consensus 761 e~~l~~le~e~~~le~~l~~~~~~~ee~ 788 (1070)
++..+.+..++..++.++....+...++
T Consensus 407 eke~KnLs~k~e~Leeri~ql~qq~~el 434 (1195)
T KOG4643|consen 407 EKEHKNLSKKHEILEERINQLLQQLAEL 434 (1195)
T ss_pred HHHhHhHhHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334433333333333333
No 65
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=98.27 E-value=0.022 Score=67.21 Aligned_cols=40 Identities=10% Similarity=0.188 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001482 733 EVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKV 772 (1070)
Q Consensus 733 e~e~~~l~~ei~~l~~~le~~~~~i~~le~~l~~le~e~~ 772 (1070)
..+++.++..+.....+-..+...|+.++.....+..++.
T Consensus 512 ~~elKk~qedi~~~k~qee~~~kqie~Lee~~~~Lrnele 551 (786)
T PF05483_consen 512 ALELKKQQEDINNSKKQEEKMLKQIENLEETNTQLRNELE 551 (786)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444544444444444444444443333333333
No 66
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=98.26 E-value=0.038 Score=69.38 Aligned_cols=11 Identities=27% Similarity=0.398 Sum_probs=6.5
Q ss_pred HHHHHHHhccc
Q 001482 362 ATETYMSTFDR 372 (1070)
Q Consensus 362 a~~~y~~~m~~ 372 (1070)
-+.+|-+.|+.
T Consensus 286 lveTY~KIm~h 296 (1317)
T KOG0612|consen 286 LVETYGKIMNH 296 (1317)
T ss_pred HHHHHHHHhch
Confidence 34566666654
No 67
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.26 E-value=0.032 Score=68.50 Aligned_cols=25 Identities=16% Similarity=0.356 Sum_probs=16.2
Q ss_pred cccCccchhHhhHHHHHHHHHhcCc
Q 001482 1019 QQSNQEDYTKFTVQKLKQELTKHNF 1043 (1070)
Q Consensus 1019 ~~~~~~~~~~~~~~~~~~~~~~~~~ 1043 (1070)
.+.+.=||..+++-+-+++|.+..=
T Consensus 948 k~gt~yDf~~~~p~~are~l~~Lq~ 972 (1174)
T KOG0933|consen 948 KKGTDYDFESYDPHEAREELKKLQE 972 (1174)
T ss_pred CCCCccccccCCHhHHHHHHHHhhH
Confidence 4455567777777777777766543
No 68
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=98.22 E-value=0.00096 Score=82.25 Aligned_cols=66 Identities=20% Similarity=0.177 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHhhhhhhh
Q 001482 892 EQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQELTKARLNETALGSKLRAV 957 (1070)
Q Consensus 892 e~r~~~i~~le~~Le~er~~~~ea~~r~~~L~~ql~~~~~~l~~le~el~~~~~~~~~l~~~l~~~ 957 (1070)
+.+...+..+++....+...+....+-.-+|-..|-+++.+|+.++..+.....++..|+.+|.+.
T Consensus 590 e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~ 655 (697)
T PF09726_consen 590 EVLMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQL 655 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555666666655555555554555556667788999999999999998888888999999886
No 69
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.19 E-value=0.044 Score=67.42 Aligned_cols=65 Identities=20% Similarity=0.211 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001482 561 DYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAA 629 (1070)
Q Consensus 561 e~~~~i~~L~~~~~~Le~~~~~l~~eLe~~~~el~e~k~k~e~~~~el~~~~~~l~~Ei~~Lk~~l~~l 629 (1070)
+....+..++..+..+..+...+..++...+.++......+...... .+.++.++..+++++..+
T Consensus 403 ~aK~~~~~~~t~~k~a~~k~e~~~~elk~~e~e~~t~~~~~~~~~~~----ld~~q~eve~l~~~l~~l 467 (1174)
T KOG0933|consen 403 DAKITLSEASTEIKQAKLKLEHLRKELKLREGELATASAEYVKDIEE----LDALQNEVEKLKKRLQSL 467 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHHHHHHHHH----HHHHHHHHHHHHHHHHhc
Confidence 33334444444444444444444444444444444444444332222 233455555555554443
No 70
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.19 E-value=0.03 Score=66.62 Aligned_cols=69 Identities=22% Similarity=0.305 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001482 693 TLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFE 761 (1070)
Q Consensus 693 ~i~e~e~ei~el~~kie~~e~~l~~l~~el~e~e~ki~~~e~e~~~l~~ei~~l~~~le~~~~~i~~le 761 (1070)
+...-++.+-.++++..+++.+++.|+.+++.+..++...+..+...+..|..+..+.+....++..+.
T Consensus 424 Qk~reqe~iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlq 492 (1118)
T KOG1029|consen 424 QKNREQEWIVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQ 492 (1118)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHH
Confidence 333333444445555555556666666666665555555444444444444444444444433333333
No 71
>COG1159 Era GTPase [General function prediction only]
Probab=98.18 E-value=2.2e-06 Score=92.28 Aligned_cols=58 Identities=31% Similarity=0.527 Sum_probs=44.1
Q ss_pred CCEEEEEeecCCCCChhHHHHHHhCCCCCccccC----CCCcccceEEeeccccccccCCCCceeEEEeeccccc
Q 001482 69 EPIGVVSVCGRARQGKSFILNQLLGRSSGFQVAS----THRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (1070)
Q Consensus 69 ~~v~vvsv~G~~r~GKS~lln~l~~~~~gF~~~~----~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~ 139 (1070)
-..++|+|+|.+.+|||||||+|+|.. .++-+ |++..-+||..- .+..++|+||||+-
T Consensus 4 ~ksGfVaIiGrPNvGKSTLlN~l~G~K--isIvS~k~QTTR~~I~GI~t~-----------~~~QiIfvDTPGih 65 (298)
T COG1159 4 FKSGFVAIIGRPNVGKSTLLNALVGQK--ISIVSPKPQTTRNRIRGIVTT-----------DNAQIIFVDTPGIH 65 (298)
T ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCc--eEeecCCcchhhhheeEEEEc-----------CCceEEEEeCCCCC
Confidence 357899999999999999999999986 33332 233334787743 24689999999985
No 72
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.12 E-value=0.047 Score=65.01 Aligned_cols=8 Identities=38% Similarity=0.592 Sum_probs=3.9
Q ss_pred hHHHHHHH
Q 001482 149 TQIFSLAV 156 (1070)
Q Consensus 149 ~~ifaL~~ 156 (1070)
+.|+|||-
T Consensus 52 aqIWALsD 59 (1118)
T KOG1029|consen 52 AQIWALSD 59 (1118)
T ss_pred HHHHHhhh
Confidence 34555543
No 73
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=98.10 E-value=0.062 Score=65.76 Aligned_cols=33 Identities=15% Similarity=0.317 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhcchHHHhhhhhhh
Q 001482 925 EVQSAQAKLDEMQQELTKARLNETALGSKLRAV 957 (1070)
Q Consensus 925 ql~~~~~~l~~le~el~~~~~~~~~l~~~l~~~ 957 (1070)
.+..+...|..+...++..+++...+...|..+
T Consensus 445 ~~~~~~~~i~~l~~~L~~~pinm~~v~~~l~~a 477 (560)
T PF06160_consen 445 YFFDVSDEIEELSDELNQVPINMDEVNKQLEEA 477 (560)
T ss_pred HHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHH
Confidence 355666777777777777777777777777765
No 74
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.04 E-value=0.092 Score=65.33 Aligned_cols=20 Identities=20% Similarity=0.418 Sum_probs=18.2
Q ss_pred EEEeecCCCCChhHHHHHHh
Q 001482 73 VVSVCGRARQGKSFILNQLL 92 (1070)
Q Consensus 73 vvsv~G~~r~GKS~lln~l~ 92 (1070)
|-||+||.|||||-||..+.
T Consensus 27 FTaIIGPNGSGKSNlMDAIS 46 (1141)
T KOG0018|consen 27 FTAIIGPNGSGKSNLMDAIS 46 (1141)
T ss_pred ceeeeCCCCCchHHHHHHHH
Confidence 78999999999999998864
No 75
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=98.02 E-value=0.066 Score=63.02 Aligned_cols=19 Identities=5% Similarity=0.144 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001482 916 NAMAERLSLEVQSAQAKLD 934 (1070)
Q Consensus 916 ~~r~~~L~~ql~~~~~~l~ 934 (1070)
..++..++.++++++....
T Consensus 903 ~~~~p~~~~~ledL~qRy~ 921 (961)
T KOG4673|consen 903 ADRVPGIKAELEDLRQRYA 921 (961)
T ss_pred HHhhHHHHHHHHHHHHHHH
Confidence 3444444444444444443
No 76
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=98.01 E-value=2.4e-06 Score=107.60 Aligned_cols=27 Identities=26% Similarity=0.359 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001482 915 ANAMAERLSLEVQSAQAKLDEMQQELT 941 (1070)
Q Consensus 915 a~~r~~~L~~ql~~~~~~l~~le~el~ 941 (1070)
+..++..|..++..++..+..|+..+.
T Consensus 508 L~~~~~~Le~e~~~L~~~~~~Le~~l~ 534 (722)
T PF05557_consen 508 LQKEIEELERENERLRQELEELESELE 534 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444443
No 77
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.01 E-value=0.0024 Score=78.82 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=19.0
Q ss_pred EEEEEeecCCCCChhHHHHHHh
Q 001482 71 IGVVSVCGRARQGKSFILNQLL 92 (1070)
Q Consensus 71 v~vvsv~G~~r~GKS~lln~l~ 92 (1070)
.++..|+|+.|+|||+||..|.
T Consensus 27 ~g~~~i~G~NG~GKStll~aI~ 48 (562)
T PHA02562 27 VKKTLITGKNGAGKSTMLEALT 48 (562)
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3688889999999999998875
No 78
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.94 E-value=0.085 Score=61.72 Aligned_cols=96 Identities=11% Similarity=0.244 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH
Q 001482 557 KLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAM------EDQVCSEIEVLKSRSTAAE 630 (1070)
Q Consensus 557 k~~~e~~~~i~~L~~~~~~Le~~~~~l~~eLe~~~~el~e~k~k~e~~~~el~~~------~~~l~~Ei~~Lk~~l~~le 630 (1070)
..+..+.+.+..+..+...++..++.+..+++..+.+++.++...+++.+.+... .+....|...|.+.+..+.
T Consensus 273 ~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~ 352 (581)
T KOG0995|consen 273 DDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQ 352 (581)
T ss_pred hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444455555555555556666666666666655555555555544433221 1234444444445444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001482 631 ARLAAAREQALSAQEEVEEWKR 652 (1070)
Q Consensus 631 ~~l~~l~~e~q~lq~el~e~k~ 652 (1070)
..++.+...+-.+..+++...+
T Consensus 353 ~~~d~l~k~vw~~~l~~~~~f~ 374 (581)
T KOG0995|consen 353 SELDRLSKEVWELKLEIEDFFK 374 (581)
T ss_pred HHHHHHHHHHHhHHHHHHHHHH
Confidence 4444444443333333333333
No 79
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=97.93 E-value=1.8e-05 Score=75.72 Aligned_cols=59 Identities=25% Similarity=0.368 Sum_probs=41.0
Q ss_pred EEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeeccccccc
Q 001482 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAY 141 (1070)
Q Consensus 74 vsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~~~ 141 (1070)
|+|+|++++|||+|+|.|+|.. .+.+++. .++|.....-..++ + ...+.|+||||+.+.
T Consensus 2 V~iiG~~~~GKSTlin~l~~~~-~~~~~~~-~~~T~~~~~~~~~~-----~--~~~~~~vDtpG~~~~ 60 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGKK-LAKVSNI-PGTTRDPVYGQFEY-----N--NKKFILVDTPGINDG 60 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTST-SSEESSS-TTSSSSEEEEEEEE-----T--TEEEEEEESSSCSSS
T ss_pred EEEECCCCCCHHHHHHHHhccc-ccccccc-ccceeeeeeeeeee-----c--eeeEEEEeCCCCccc
Confidence 7899999999999999999853 3445443 46777773321111 1 245679999998753
No 80
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=97.92 E-value=3.2e-05 Score=82.47 Aligned_cols=102 Identities=23% Similarity=0.384 Sum_probs=57.8
Q ss_pred EEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeecccccccCCCCcc-hhHHH
Q 001482 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYDQTGTY-STQIF 152 (1070)
Q Consensus 74 vsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~~~~~~~~~-d~~if 152 (1070)
|-++|..|+|||++.|.|+|... |..+.+..+||...-..... .+| ..|.++||||+.+.+..... -..|.
T Consensus 3 IlllG~tGsGKSs~~N~ilg~~~-f~~~~~~~~~t~~~~~~~~~-----~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~ 74 (212)
T PF04548_consen 3 ILLLGKTGSGKSSLGNSILGKEV-FKSGSSAKSVTQECQKYSGE-----VDG--RQVTVIDTPGLFDSDGSDEEIIREIK 74 (212)
T ss_dssp EEEECSTTSSHHHHHHHHHTSS--SS--TTTSS--SS-EEEEEE-----ETT--EEEEEEE--SSEETTEEHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhcccc-eeeccccCCcccccceeeee-----ecc--eEEEEEeCCCCCCCcccHHHHHHHHH
Confidence 56899999999999999999863 88877777788766544332 133 56889999999765542111 11222
Q ss_pred HHHHhhh----hheeecC-CCCCCHHHhhhhHHHHHh
Q 001482 153 SLAVLLS----SMFIYNQ-MGGIDESAIDRLSLVTQM 184 (1070)
Q Consensus 153 aL~~llS----S~~IyN~-~~~i~~~~l~~L~~~~~~ 184 (1070)
- ++.++ +++||=+ .+.++..+...+..+.++
T Consensus 75 ~-~l~~~~~g~ha~llVi~~~r~t~~~~~~l~~l~~~ 110 (212)
T PF04548_consen 75 R-CLSLCSPGPHAFLLVIPLGRFTEEDREVLELLQEI 110 (212)
T ss_dssp H-HHHHTTT-ESEEEEEEETTB-SHHHHHHHHHHHHH
T ss_pred H-HHHhccCCCeEEEEEEecCcchHHHHHHHHHHHHH
Confidence 2 11122 2333332 237888888777776655
No 81
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=97.92 E-value=5e-05 Score=80.02 Aligned_cols=58 Identities=28% Similarity=0.442 Sum_probs=41.6
Q ss_pred EEeecCCCCChhHHHHHHhCCCCCccccCCCCcccc----eEEeeccccccccCCCCceeEEEeecccccccCC
Q 001482 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTK----GLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYDQ 143 (1070)
Q Consensus 74 vsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~----giw~~~~p~~~~~~~g~~~~~~llDteG~~~~~~ 143 (1070)
|+++|.+++|||+|+|.|+|.. +|..+....++|. +-+-| +| ..+.|+||||+++...
T Consensus 3 i~lvG~~g~GKSsl~N~ilg~~-~~~~~~~~~~~T~~~~~~~~~~---------~~--~~i~viDTPG~~d~~~ 64 (196)
T cd01852 3 LVLVGKTGAGKSATGNTILGRE-VFESKLSASSVTKTCQKESAVW---------DG--RRVNVIDTPGLFDTSV 64 (196)
T ss_pred EEEECCCCCCHHHHHHHhhCCC-ccccccCCCCcccccceeeEEE---------CC--eEEEEEECcCCCCccC
Confidence 7899999999999999999974 4655543334444 44433 23 4688999999986543
No 82
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.92 E-value=0.014 Score=72.32 Aligned_cols=7 Identities=14% Similarity=0.468 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 001482 586 TVDSLKN 592 (1070)
Q Consensus 586 eLe~~~~ 592 (1070)
+|..++.
T Consensus 461 eL~qlr~ 467 (697)
T PF09726_consen 461 ELSQLRQ 467 (697)
T ss_pred HHHHHHH
Confidence 3333333
No 83
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=97.92 E-value=1.2e-05 Score=100.94 Aligned_cols=22 Identities=5% Similarity=0.057 Sum_probs=9.7
Q ss_pred HHHHHHHHHHH-HHHHHHhcccC
Q 001482 352 EAECRRAYDSA-TETYMSTFDRS 373 (1070)
Q Consensus 352 ~~~~~~a~~~a-~~~y~~~m~~~ 373 (1070)
...|...+-.. ..+|...+...
T Consensus 68 r~~NLk~l~~~i~~yy~e~L~~~ 90 (713)
T PF05622_consen 68 RVSNLKKLLRNIKSYYQEELGQQ 90 (713)
T ss_dssp HHHHHHHHHHHHHHHHHTTT---
T ss_pred HHHHHHHHHHHHHHHHHHHcCCC
Confidence 45555544444 45555556554
No 84
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=97.89 E-value=0.077 Score=59.60 Aligned_cols=37 Identities=19% Similarity=0.290 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001482 566 INNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYD 602 (1070)
Q Consensus 566 i~~L~~~~~~Le~~~~~l~~eLe~~~~el~e~k~k~e 602 (1070)
+..|..++..+......+..++...+.....+.+.++
T Consensus 24 ~~~L~kk~~ell~e~k~~~k~~~~~~Kk~~~l~kek~ 60 (309)
T PF09728_consen 24 LEALCKKYAELLEEMKRLQKQLKKLQKKQEQLQKEKD 60 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333
No 85
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.89 E-value=0.024 Score=68.09 Aligned_cols=11 Identities=27% Similarity=0.631 Sum_probs=6.5
Q ss_pred CcccceEEeec
Q 001482 105 RPCTKGLWLWS 115 (1070)
Q Consensus 105 ~~~t~giw~~~ 115 (1070)
.+...|.|+.-
T Consensus 105 qsdd~g~~iae 115 (970)
T KOG0946|consen 105 QSDDLGLWIAE 115 (970)
T ss_pred hhhHHHHHHHH
Confidence 34566777653
No 86
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=97.88 E-value=0.00011 Score=79.98 Aligned_cols=65 Identities=22% Similarity=0.292 Sum_probs=45.1
Q ss_pred CCCEEEEEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeeccccccc
Q 001482 68 KEPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAY 141 (1070)
Q Consensus 68 ~~~v~vvsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~~~ 141 (1070)
..+-.-|.|+|..++|||+|+|.|+|.. .|.++ ...++|..+-+...+ .+| ..+.|+||||++..
T Consensus 28 ~~~~~~IllvG~tGvGKSSliNaLlg~~-~~~v~-~~~~~T~~~~~~~~~-----~~g--~~i~vIDTPGl~~~ 92 (249)
T cd01853 28 LDFSLTILVLGKTGVGKSSTINSIFGER-KAATS-AFQSETLRVREVSGT-----VDG--FKLNIIDTPGLLES 92 (249)
T ss_pred ccCCeEEEEECCCCCcHHHHHHHHhCCC-CcccC-CCCCceEEEEEEEEE-----ECC--eEEEEEECCCcCcc
Confidence 3456678999999999999999999975 23443 234556655443222 123 46889999999854
No 87
>PRK11637 AmiB activator; Provisional
Probab=97.87 E-value=0.018 Score=68.33 Aligned_cols=69 Identities=13% Similarity=0.218 Sum_probs=27.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001482 699 EEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIM 767 (1070)
Q Consensus 699 ~ei~el~~kie~~e~~l~~l~~el~e~e~ki~~~e~e~~~l~~ei~~l~~~le~~~~~i~~le~~l~~l 767 (1070)
+++.+++.++...+.++..++.++..++.++..+..++..+..++..+..++..++..+..++.++..+
T Consensus 47 ~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~ 115 (428)
T PRK11637 47 DQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKL 115 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444443433333333333333333333333333333333333333
No 88
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=97.84 E-value=0.13 Score=62.72 Aligned_cols=23 Identities=26% Similarity=0.281 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001482 616 CSEIEVLKSRSTAAEARLAAARE 638 (1070)
Q Consensus 616 ~~Ei~~Lk~~l~~le~~l~~l~~ 638 (1070)
...+..|+.-++....++..+..
T Consensus 393 e~ni~kL~~~v~~s~~rl~~L~~ 415 (594)
T PF05667_consen 393 EENIAKLQALVEASEQRLVELAQ 415 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555444433
No 89
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=97.82 E-value=0.13 Score=62.67 Aligned_cols=26 Identities=23% Similarity=0.337 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001482 835 ERVQRQIESLERQKTDLTNEVNRIRE 860 (1070)
Q Consensus 835 e~l~~~i~~Le~e~~~l~~el~~l~~ 860 (1070)
+.....++.+++++..+..++..+..
T Consensus 490 e~~~~~le~l~~El~~l~~e~~~lq~ 515 (980)
T KOG0980|consen 490 ESQAKALESLRQELALLLIELEELQR 515 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444443
No 90
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=97.81 E-value=0.11 Score=58.49 Aligned_cols=54 Identities=9% Similarity=0.207 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001482 723 KAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQ 776 (1070)
Q Consensus 723 ~e~e~ki~~~e~e~~~l~~ei~~l~~~le~~~~~i~~le~~l~~le~e~~~le~ 776 (1070)
..+...+.-|......++..+.....-+.....+++.+.+.+..++.+...|..
T Consensus 212 ~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~ 265 (309)
T PF09728_consen 212 KELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKS 265 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444555555555555555555555555555555555555544
No 91
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=97.80 E-value=0.15 Score=60.17 Aligned_cols=48 Identities=23% Similarity=0.171 Sum_probs=30.3
Q ss_pred cCccchhHhhHHHHHHHHHhcCchhhhhhcc-CCChHHHHHHHHHhhcc
Q 001482 1021 SNQEDYTKFTVQKLKQELTKHNFGAELLQLR-NPNKKEILALYEKCILQ 1068 (1070)
Q Consensus 1021 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 1068 (1070)
+.+.|--.-+-..|-.+++-.++--..|+.+ ..-|.|-.-||||+-+.
T Consensus 484 ~~qRdrfr~~n~~~e~~~r~a~~~~~~l~~el~~~~a~n~~lyekir~~ 532 (629)
T KOG0963|consen 484 SSQRDRFRARNVELEAQVRLANDKIGFLESELEKLKADNTKLYEKIRYL 532 (629)
T ss_pred hcccchhhhhhhhHHHHHhhccCchhHHhhhhhhhhcccccccccccCc
Confidence 3445543444455556666666666666666 44577888899998654
No 92
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=97.80 E-value=0.00019 Score=85.44 Aligned_cols=63 Identities=19% Similarity=0.301 Sum_probs=44.6
Q ss_pred EEEEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeecccccccCC
Q 001482 72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYDQ 143 (1070)
Q Consensus 72 ~vvsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~~~~~ 143 (1070)
.-|.|+|..+.|||+|+|.|+|.. .|.++ ...++|..+-.+... .+| ..|.|+||||++....
T Consensus 119 lrIvLVGKTGVGKSSLINSILGek-vf~vs-s~~~~TTr~~ei~~~-----idG--~~L~VIDTPGL~dt~~ 181 (763)
T TIGR00993 119 LNILVLGKSGVGKSATINSIFGEV-KFSTD-AFGMGTTSVQEIEGL-----VQG--VKIRVIDTPGLKSSAS 181 (763)
T ss_pred eEEEEECCCCCCHHHHHHHHhccc-ccccc-CCCCCceEEEEEEEE-----ECC--ceEEEEECCCCCcccc
Confidence 359999999999999999999974 36553 344666665333211 134 4688999999986543
No 93
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=97.80 E-value=0.28 Score=63.15 Aligned_cols=89 Identities=21% Similarity=0.286 Sum_probs=45.8
Q ss_pred CCEEEEEeecCCCCChhHHHHHHhCCCCCccccCCCCcccce-EEeeccccccccC-CCCceeEEEeeccccccc-CCC-
Q 001482 69 EPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKG-LWLWSAPLKRTAL-DGTEYNLLLLDSEGIDAY-DQT- 144 (1070)
Q Consensus 69 ~~v~vvsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~g-iw~~~~p~~~~~~-~g~~~~~~llDteG~~~~-~~~- 144 (1070)
.|+.. |+|+.|+||+|+.+.|==..+|| .-|.++| .++- .|-..... --..+.+-|-|+-|-.-. .++
T Consensus 27 sPlTL--IvG~NG~GKTTiIEcLKyatTG~-----lPpnsk~~~FiH-dpkIage~ev~AqvkL~f~~~~G~~~~~~R~~ 98 (1294)
T KOG0962|consen 27 SPLTL--IVGANGTGKTTIIECLKYATTGE-----LPPNSKGGSFIH-DPKVAGETEVRAQVKLAFTDVNGETMICTRTI 98 (1294)
T ss_pred CCeee--EecCCCCCchhHHHHHHHHhcCc-----CCCCCcCCCCCC-CccccchhhhhheeeeeeecCCCcEEEeehhh
Confidence 46654 68999999999999985433444 1134444 2222 22221100 001255666677774311 111
Q ss_pred -CcchhHHHHHHHhhhhheeec
Q 001482 145 -GTYSTQIFSLAVLLSSMFIYN 165 (1070)
Q Consensus 145 -~~~d~~ifaL~~llSS~~IyN 165 (1070)
-+....=..++++=|-.+.||
T Consensus 99 qlt~k~~~~~~ktles~~~~~~ 120 (1294)
T KOG0962|consen 99 QLTQKRTKMEFKTLESVIWAIN 120 (1294)
T ss_pred HHHHHHHHHHHHHHhhhheeee
Confidence 111223345566666677777
No 94
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=97.78 E-value=0.089 Score=56.81 Aligned_cols=15 Identities=13% Similarity=0.521 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHH
Q 001482 524 EDNMKLLKKQLEDSE 538 (1070)
Q Consensus 524 ~~~l~~L~k~le~~e 538 (1070)
.+++..|+-+++...
T Consensus 5 q~eia~LrlEidtik 19 (305)
T PF14915_consen 5 QDEIAMLRLEIDTIK 19 (305)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444443333
No 95
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.73 E-value=0.054 Score=65.19 Aligned_cols=53 Identities=23% Similarity=0.287 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001482 555 KKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTK 607 (1070)
Q Consensus 555 ~kk~~~e~~~~i~~L~~~~~~Le~~~~~l~~eLe~~~~el~e~k~k~e~~~~e 607 (1070)
++..+.++..+++.++.....|..+...+..++.....+...++..++.+.++
T Consensus 662 yK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~q 714 (970)
T KOG0946|consen 662 YKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQ 714 (970)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444455555555555555555555555555444444444444444433
No 96
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=97.73 E-value=1.5e-05 Score=100.40 Aligned_cols=32 Identities=16% Similarity=0.283 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001482 616 CSEIEVLKSRSTAAEARLAAAREQALSAQEEV 647 (1070)
Q Consensus 616 ~~Ei~~Lk~~l~~le~~l~~l~~e~q~lq~el 647 (1070)
..++..++..+..++..+..++.+++.++..+
T Consensus 170 ~~~~~~l~~~~~~~e~~~~~l~~e~~~l~~~l 201 (722)
T PF05557_consen 170 KNELSELERQAENAESQIQSLESELEELKEQL 201 (722)
T ss_dssp --------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333
No 97
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.71 E-value=0.31 Score=60.96 Aligned_cols=25 Identities=20% Similarity=0.155 Sum_probs=19.6
Q ss_pred CCChHHHHHHHHHHHHHHHHHHhhc
Q 001482 375 PPEEVALGEAHEAAVQKALAVYNAG 399 (1070)
Q Consensus 375 p~~~~~l~~~h~~~~~~al~~f~~~ 399 (1070)
-++.+.+......+...+...|...
T Consensus 159 K~EYeelK~E~~kAE~~t~~~~~kk 183 (1141)
T KOG0018|consen 159 KPEYEELKYEMAKAEETTTGNYKKK 183 (1141)
T ss_pred hHHHHHHHHHHHHHHHHHhhHhhhh
Confidence 3456788888888888888888765
No 98
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=97.70 E-value=0.13 Score=56.74 Aligned_cols=71 Identities=13% Similarity=0.125 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001482 725 AESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVA 795 (1070)
Q Consensus 725 ~e~ki~~~e~e~~~l~~ei~~l~~~le~~~~~i~~le~~l~~le~e~~~le~~l~~~~~~~ee~~e~l~~~ 795 (1070)
+.+++.....+.+..+.+...+..++..+...+..+.++...+..++..+-.++..+..+.+.+...-+.+
T Consensus 107 ~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~L 177 (499)
T COG4372 107 ARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQL 177 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444555555555555555555555555555555555444444444444433333333
No 99
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=97.69 E-value=0.43 Score=62.29 Aligned_cols=22 Identities=32% Similarity=0.514 Sum_probs=18.5
Q ss_pred EEEEEeecCCCCChhHHHHHHh
Q 001482 71 IGVVSVCGRARQGKSFILNQLL 92 (1070)
Q Consensus 71 v~vvsv~G~~r~GKS~lln~l~ 92 (1070)
-+|-.|+||.|+|||+||+.+.
T Consensus 25 ~gi~lI~G~nGsGKSSIldAI~ 46 (908)
T COG0419 25 SGIFLIVGPNGAGKSSILDAIT 46 (908)
T ss_pred CCeEEEECCCCCcHHHHHHHHH
Confidence 3466789999999999999975
No 100
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.69 E-value=0.24 Score=59.29 Aligned_cols=44 Identities=14% Similarity=0.187 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001482 563 TSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLT 606 (1070)
Q Consensus 563 ~~~i~~L~~~~~~Le~~~~~l~~eLe~~~~el~e~k~k~e~~~~ 606 (1070)
+.++...+..+.........+..+++..-.++..+..+++...+
T Consensus 125 q~q~e~~~n~~q~~~~k~~el~~e~~~k~ae~~~lr~k~dss~s 168 (716)
T KOG4593|consen 125 QEQLERNRNQCQANLKKELELLREKEDKLAELGTLRNKLDSSLS 168 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333344444444444444444444444444433
No 101
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=97.67 E-value=0.24 Score=58.60 Aligned_cols=45 Identities=13% Similarity=0.144 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001482 900 KLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQELTKAR 944 (1070)
Q Consensus 900 ~le~~Le~er~~~~ea~~r~~~L~~ql~~~~~~l~~le~el~~~~ 944 (1070)
.|...+......+.++..+.+.+.......+.-+..+++.+....
T Consensus 394 ~Lr~~n~~~~~~~~~~~~~~~el~~~~~~~ke~i~klE~dl~~~~ 438 (629)
T KOG0963|consen 394 SLRVANSGLSGRITELSKKGEELEAKATEQKELIAKLEQDLLKVQ 438 (629)
T ss_pred HHhccccccchhHHHHHhhhhhhHHHHHHHHHHHHHHHhhHhhcc
Confidence 333333333445566666777777777777777777777766554
No 102
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=97.66 E-value=5.5e-05 Score=77.37 Aligned_cols=22 Identities=50% Similarity=0.794 Sum_probs=20.5
Q ss_pred EEeecCCCCChhHHHHHHhCCC
Q 001482 74 VSVCGRARQGKSFILNQLLGRS 95 (1070)
Q Consensus 74 vsv~G~~r~GKS~lln~l~~~~ 95 (1070)
|+|+|.+++|||+|+|.|+|..
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~ 22 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRP 22 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS
T ss_pred CEEEcCCCCCHHHHHHHHHhcc
Confidence 7899999999999999999963
No 103
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=97.65 E-value=0.059 Score=54.45 Aligned_cols=77 Identities=21% Similarity=0.261 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001482 867 SKVALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQELTKAR 944 (1070)
Q Consensus 867 ~~~~~le~~v~ele~eie~L~~~~~e~r~~~i~~le~~Le~er~~~~ea~~r~~~L~~ql~~~~~~l~~le~el~~~~ 944 (1070)
+...+++..+..+...+..+ ....+......+..+..+......+.++..+.++....+..+...+++|+..+...+
T Consensus 109 s~~~eLeEe~~~~~~nlk~l-~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~kl~~~k 185 (205)
T KOG1003|consen 109 SQSEELEEDLRILDSNLKSL-SAKEEKLEQKEEKYEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEEKLEEAK 185 (205)
T ss_pred HHHHHHHHHHHHhHhHHHHH-HHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhHHHH
Confidence 34444555555555555555 233333333344444444444455555555555555555555555555555555443
No 104
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=97.65 E-value=0.0001 Score=92.70 Aligned_cols=12 Identities=8% Similarity=0.249 Sum_probs=6.2
Q ss_pred HHHHHHHHHHhC
Q 001482 326 GITESYLDAINN 337 (1070)
Q Consensus 326 ~~~~~~v~ain~ 337 (1070)
.++.++|..|++
T Consensus 7 ~l~~~Lv~Wv~t 18 (713)
T PF05622_consen 7 ELCDSLVTWVQT 18 (713)
T ss_dssp HHHHHHHHHHTT
T ss_pred hHHHHHHHHHHH
Confidence 345555555554
No 105
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=97.64 E-value=0.21 Score=57.28 Aligned_cols=14 Identities=21% Similarity=0.325 Sum_probs=8.4
Q ss_pred CcccCCCCCccccc
Q 001482 999 KYTQPEDGGSVFRG 1012 (1070)
Q Consensus 999 ~~~~~~~~~~~~~~ 1012 (1070)
-.+.+-||-.+|.|
T Consensus 333 ~V~A~AdG~VvyA~ 346 (420)
T COG4942 333 TVKAIADGRVVYAD 346 (420)
T ss_pred eeeeecCceEEech
Confidence 35566666666653
No 106
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=97.63 E-value=0.28 Score=59.80 Aligned_cols=35 Identities=9% Similarity=0.174 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001482 742 ETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQ 776 (1070)
Q Consensus 742 ei~~l~~~le~~~~~i~~le~~l~~le~e~~~le~ 776 (1070)
.|-+...++...+..|..+-...+.++.++..+..
T Consensus 492 RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~g 526 (594)
T PF05667_consen 492 RILEIVKNIRKQKEEIEKILSDTRELQKEINSLTG 526 (594)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444443
No 107
>PRK00089 era GTPase Era; Reviewed
Probab=97.61 E-value=0.00019 Score=80.75 Aligned_cols=60 Identities=30% Similarity=0.494 Sum_probs=41.0
Q ss_pred CEEEEEeecCCCCChhHHHHHHhCCCCCccccC---CCCcccceEEeeccccccccCCCCceeEEEeeccccccc
Q 001482 70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVAS---THRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAY 141 (1070)
Q Consensus 70 ~v~vvsv~G~~r~GKS~lln~l~~~~~gF~~~~---~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~~~ 141 (1070)
..++|+|+|++++|||+|+|.|+|..-. .+++ +......|++.. ....++|+||||+...
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~-~vs~~~~tt~~~i~~i~~~-----------~~~qi~~iDTPG~~~~ 66 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKIS-IVSPKPQTTRHRIRGIVTE-----------DDAQIIFVDTPGIHKP 66 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCcee-ecCCCCCcccccEEEEEEc-----------CCceEEEEECCCCCCc
Confidence 5689999999999999999999987521 1222 122222444432 1257999999998643
No 108
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.59 E-value=0.33 Score=58.13 Aligned_cols=25 Identities=16% Similarity=0.290 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001482 913 AAANAMAERLSLEVQSAQAKLDEMQ 937 (1070)
Q Consensus 913 ~ea~~r~~~L~~ql~~~~~~l~~le 937 (1070)
.....+.+.|+++++.++..+..++
T Consensus 555 ~~~k~~~e~LqaE~~~lk~~l~~le 579 (716)
T KOG4593|consen 555 QIKKNRLEELQAELERLKERLTALE 579 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445566666666666666555433
No 109
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.56 E-value=0.32 Score=57.12 Aligned_cols=23 Identities=17% Similarity=0.264 Sum_probs=16.8
Q ss_pred CcccChhHHHHHHHHHHHHHhCC
Q 001482 316 ATVLTGPVLIGITESYLDAINNG 338 (1070)
Q Consensus 316 g~~ltg~~l~~~~~~~v~ain~~ 338 (1070)
|.+=|.|-+.+++.=+|+.|+-+
T Consensus 152 gspH~WP~iL~mlhWlvdlI~~~ 174 (581)
T KOG0995|consen 152 GSPHNWPHILGMLHWLVDLIRIN 174 (581)
T ss_pred CCCCccHHHHHHHHHHHHHHHHh
Confidence 55667888888888777777654
No 110
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=97.51 E-value=0.00013 Score=73.08 Aligned_cols=57 Identities=25% Similarity=0.381 Sum_probs=39.8
Q ss_pred EEEeecCCCCChhHHHHHHhCCCCCccccC---CCCcccceEEeeccccccccCCCCceeEEEeecccccccC
Q 001482 73 VVSVCGRARQGKSFILNQLLGRSSGFQVAS---THRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYD 142 (1070)
Q Consensus 73 vvsv~G~~r~GKS~lln~l~~~~~gF~~~~---~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~~~~ 142 (1070)
-|+++|.+.+|||+|.|.|.|.. ..+++ +...+..|.|-+. + ..+.|+|+||+.+..
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~--~~v~n~pG~Tv~~~~g~~~~~---------~--~~~~lvDlPG~ysl~ 61 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAK--QKVGNWPGTTVEKKEGIFKLG---------D--QQVELVDLPGIYSLS 61 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS--EEEEESTTSSSEEEEEEEEET---------T--EEEEEEE----SSSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC--ceecCCCCCCeeeeeEEEEec---------C--ceEEEEECCCcccCC
Confidence 38999999999999999999987 54443 2334567888763 1 578999999987653
No 111
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=97.47 E-value=0.54 Score=57.67 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001482 919 AERLSLEVQSAQAKLDEMQQELT 941 (1070)
Q Consensus 919 ~~~L~~ql~~~~~~l~~le~el~ 941 (1070)
+..|....+.++.+|..|+.-+.
T Consensus 479 i~~l~~~~e~mk~kl~elq~lv~ 501 (617)
T PF15070_consen 479 ISRLAQDREEMKVKLLELQELVL 501 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555554
No 112
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=97.45 E-value=0.00023 Score=79.02 Aligned_cols=56 Identities=32% Similarity=0.571 Sum_probs=39.7
Q ss_pred EEEEeecCCCCChhHHHHHHhCCCCCcc-ccC---CCCcccceEEeeccccccccCCCCceeEEEeecccccc
Q 001482 72 GVVSVCGRARQGKSFILNQLLGRSSGFQ-VAS---THRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (1070)
Q Consensus 72 ~vvsv~G~~r~GKS~lln~l~~~~~gF~-~~~---~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~~ 140 (1070)
+.|+|+|++++|||+|+|.|+|.. +. +++ +......|||.. + ...++|+||||+..
T Consensus 1 g~V~liG~pnvGKSTLln~L~~~~--~~~vs~~~~TTr~~i~~i~~~----------~-~~qii~vDTPG~~~ 60 (270)
T TIGR00436 1 GFVAILGRPNVGKSTLLNQLHGQK--ISITSPKAQTTRNRISGIHTT----------G-ASQIIFIDTPGFHE 60 (270)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCc--EeecCCCCCcccCcEEEEEEc----------C-CcEEEEEECcCCCC
Confidence 368999999999999999999975 32 222 233334566643 1 23589999999864
No 113
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=97.45 E-value=0.56 Score=57.49 Aligned_cols=14 Identities=29% Similarity=0.192 Sum_probs=8.1
Q ss_pred hhHHHHHHHHHhcC
Q 001482 1029 FTVQKLKQELTKHN 1042 (1070)
Q Consensus 1029 ~~~~~~~~~~~~~~ 1042 (1070)
=|++..=|-|.+..
T Consensus 573 pTAqqImqLL~eiQ 586 (617)
T PF15070_consen 573 PTAQQIMQLLQEIQ 586 (617)
T ss_pred chHHHHHHHhHhcC
Confidence 46666666555443
No 114
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.44 E-value=0.048 Score=58.05 Aligned_cols=69 Identities=20% Similarity=0.315 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001482 728 KMRSYEVEISSQKLETKELSEKLEAVNAKAQSF--EREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAE 796 (1070)
Q Consensus 728 ki~~~e~e~~~l~~ei~~l~~~le~~~~~i~~l--e~~l~~le~e~~~le~~l~~~~~~~ee~~e~l~~~e 796 (1070)
.+..++.+...++.++..+..++...+..+... .+++..|..++..++.+..++..++..+..++..++
T Consensus 53 e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~ 123 (239)
T COG1579 53 ELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLE 123 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444444444443333222 234444555555444444444443433333333333
No 115
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=97.42 E-value=0.00062 Score=70.52 Aligned_cols=62 Identities=19% Similarity=0.222 Sum_probs=42.4
Q ss_pred CCEEEEEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeeccccccc
Q 001482 69 EPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAY 141 (1070)
Q Consensus 69 ~~v~vvsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~~~ 141 (1070)
....-|.|+|+.++|||+|+|.|++......+++ ..++|.++-+|..+ + .+.|+||+|++..
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~-~~~~t~~~~~~~~~-------~---~~~liDtpG~~~~ 77 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSK-TPGRTQLINFFEVN-------D---GFRLVDLPGYGYA 77 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccC-CCCcceEEEEEEeC-------C---cEEEEeCCCCccc
Confidence 4445679999999999999999998752223333 23467776544321 1 4789999998643
No 116
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=97.41 E-value=0.65 Score=57.32 Aligned_cols=84 Identities=19% Similarity=0.250 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001482 561 DYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQA 640 (1070)
Q Consensus 561 e~~~~i~~L~~~~~~Le~~~~~l~~eLe~~~~el~e~k~k~e~~~~el~~~~~~l~~Ei~~Lk~~l~~le~~l~~l~~e~ 640 (1070)
.|..+|.+|+.++..++........+.+.+.....++....+.+..+. ..|..+|.+++.+-..+-.....+++++
T Consensus 31 ~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~----~~lr~e~ke~K~rE~rll~dyselEeEN 106 (717)
T PF09730_consen 31 YLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELER----KRLREEIKEYKFREARLLQDYSELEEEN 106 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 456667777777777777777777777777666666666655544332 3344555554433222222223344443
Q ss_pred HHHHHHHH
Q 001482 641 LSAQEEVE 648 (1070)
Q Consensus 641 q~lq~el~ 648 (1070)
=++|..+.
T Consensus 107 islQKqvs 114 (717)
T PF09730_consen 107 ISLQKQVS 114 (717)
T ss_pred HHHHHHHH
Confidence 34444333
No 117
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=97.41 E-value=0.00046 Score=69.58 Aligned_cols=61 Identities=26% Similarity=0.475 Sum_probs=39.8
Q ss_pred EEEEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeeccccccc
Q 001482 72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAY 141 (1070)
Q Consensus 72 ~vvsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~~~ 141 (1070)
.+|+++|+.++|||+|+|.|+|.. +.+......+|. .+.+... ....+.++++||+|+...
T Consensus 4 ~~i~~~G~~g~GKttl~~~l~~~~--~~~~~~~~~~~~-~~~~~~~------~~~~~~~~liDtpG~~~~ 64 (168)
T cd04163 4 GFVAIVGRPNVGKSTLLNALVGQK--ISIVSPKPQTTR-NRIRGIY------TDDDAQIIFVDTPGIHKP 64 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCc--eEeccCCCCcee-ceEEEEE------EcCCeEEEEEECCCCCcc
Confidence 579999999999999999999875 332222222232 2222211 122467899999998643
No 118
>PF10220 DUF2146: Uncharacterized conserved protein (DUF2146); InterPro: IPR019354 Smg8 and Smg9 are two subunits of the Smg-1 complex. They suppress Smg-1 kinase activity in the isolated Smg-1 complex, and are involved in nonsense-mediated mRNA decay (NMD) in both mammals and nematodes []. NMD is a surveillance mechanism that detects and degrades mRNAs containing premature translation termination codons.
Probab=97.41 E-value=0.14 Score=64.65 Aligned_cols=72 Identities=25% Similarity=0.345 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHhhccCCChhhhHHHHHHHHHHHHHHHHHHHHHH
Q 001482 350 VEEAECRRAYDSATETYMSTFDRSKPPEEVALGEAHEAAVQKALAVYNAGAVGVGLARKKYEGLLQKFFRKAFEDHKKNV 429 (1070)
Q Consensus 350 ~~~~~~~~a~~~a~~~y~~~m~~~~p~~~~~l~~~h~~~~~~al~~f~~~~~g~~~~~~~~~~~L~~~i~~~~~~~~~~n 429 (1070)
+....|.+++..|.+.|.+.+-.. -=...|+.-..+|+.+|...+-| .....|..+|+.++.+.+..-++..
T Consensus 393 Fs~~~C~~~l~~A~~~Y~~~lP~~------Y~~~~H~~~l~~A~~~~~~~arG--p~~~~~~~~L~~~C~~~W~~Grq~C 464 (895)
T PF10220_consen 393 FSEHRCEKALPLAKEAYQENLPAH------YSSAEHENKLAQALRVFESHARG--PAVEKYLEKLQEECDAIWQSGRQLC 464 (895)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcc------cCHHHHHHHHHHHHHHHHHHccC--chHHHHHHHHHHHHHHHHHHHHhhh
Confidence 567899999999999997644221 12467899999999999888888 4567899999998887776655543
No 119
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=97.39 E-value=0.66 Score=56.86 Aligned_cols=25 Identities=12% Similarity=0.327 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001482 834 IERVQRQIESLERQKTDLTNEVNRI 858 (1070)
Q Consensus 834 ie~l~~~i~~Le~e~~~l~~el~~l 858 (1070)
++.++.++..+..+...++..+..+
T Consensus 496 le~l~~El~~l~~e~~~lq~~~~~~ 520 (980)
T KOG0980|consen 496 LESLRQELALLLIELEELQRTLSNL 520 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 3444444444444444444444433
No 120
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=97.37 E-value=0.8 Score=57.47 Aligned_cols=22 Identities=18% Similarity=0.357 Sum_probs=19.1
Q ss_pred EEEEEeecCCCCChhHHHHHHh
Q 001482 71 IGVVSVCGRARQGKSFILNQLL 92 (1070)
Q Consensus 71 v~vvsv~G~~r~GKS~lln~l~ 92 (1070)
-.|+.|+|+.++||||||+.+.
T Consensus 28 ~~~~~i~G~Ng~GKttll~ai~ 49 (650)
T TIGR03185 28 KPIILIGGLNGAGKTTLLDAIQ 49 (650)
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3477899999999999999974
No 121
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=97.36 E-value=0.34 Score=52.87 Aligned_cols=50 Identities=26% Similarity=0.418 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001482 557 KLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLT 606 (1070)
Q Consensus 557 k~~~e~~~~i~~L~~~~~~Le~~~~~l~~eLe~~~~el~e~k~k~e~~~~ 606 (1070)
..+..+.+..+.+..+...+.....++..+.+.+..++.+++.+.+++..
T Consensus 34 ~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~ 83 (294)
T COG1340 34 KEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINA 83 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444555555555555555555555555555555555555555333
No 122
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=97.36 E-value=0.00024 Score=71.93 Aligned_cols=55 Identities=31% Similarity=0.403 Sum_probs=37.5
Q ss_pred EEEEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeecccc
Q 001482 72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI 138 (1070)
Q Consensus 72 ~vvsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~ 138 (1070)
..|+++|.++.|||+|+|.|+|.. ...+++... +|++ |.|.. + +. .++|+||||+
T Consensus 103 ~~v~~~G~~nvGKStliN~l~~~~-~~~~~~~~g-~T~~-~~~~~-~------~~--~~~liDtPGi 157 (157)
T cd01858 103 ISVGFIGYPNVGKSSIINTLRSKK-VCKVAPIPG-ETKV-WQYIT-L------MK--RIYLIDCPGV 157 (157)
T ss_pred eEEEEEeCCCCChHHHHHHHhcCC-ceeeCCCCC-eeEe-EEEEE-c------CC--CEEEEECcCC
Confidence 467899999999999999999864 345555433 3444 33321 1 11 3789999995
No 123
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=97.29 E-value=0.55 Score=53.90 Aligned_cols=24 Identities=8% Similarity=0.101 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001482 918 MAERLSLEVQSAQAKLDEMQQELT 941 (1070)
Q Consensus 918 r~~~L~~ql~~~~~~l~~le~el~ 941 (1070)
+++.|...-..++..|.+++.+..
T Consensus 225 ~l~eL~~~~~~L~~~Ias~e~~aA 248 (420)
T COG4942 225 KLEELRANESRLKNEIASAEAAAA 248 (420)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHH
Confidence 344444444444445555444443
No 124
>PRK11281 hypothetical protein; Provisional
Probab=97.28 E-value=1.3 Score=57.98 Aligned_cols=21 Identities=10% Similarity=0.086 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001482 568 NLQGENISLREKSSSLSKTVD 588 (1070)
Q Consensus 568 ~L~~~~~~Le~~~~~l~~eLe 588 (1070)
.++.++..+.++...+..+++
T Consensus 84 ~L~k~l~~Ap~~l~~a~~~Le 104 (1113)
T PRK11281 84 QLKQQLAQAPAKLRQAQAELE 104 (1113)
T ss_pred HHHHHHHHhHHHHHHHHHHHH
Confidence 333333333333333333333
No 125
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=97.26 E-value=0.28 Score=49.91 Aligned_cols=31 Identities=19% Similarity=0.340 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001482 834 IERVQRQIESLERQKTDLTNEVNRIRESELE 864 (1070)
Q Consensus 834 ie~l~~~i~~Le~e~~~l~~el~~l~~~~~~ 864 (1070)
...+...+..|+.+...+..+...+.....+
T Consensus 97 ~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~e 127 (193)
T PF14662_consen 97 QQSLVAEIETLQEENGKLLAERDGLKKRSKE 127 (193)
T ss_pred HHHHHHHHHHHHHHHhHHHHhhhhHHHHHHH
Confidence 3444444445555555544444444433333
No 126
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.24 E-value=0.00016 Score=72.55 Aligned_cols=71 Identities=21% Similarity=0.305 Sum_probs=39.4
Q ss_pred HHHHHHHHc-cCCCEEEEEeecCCCCChhHHHHHHhCCCCCcccc-------CCCCcccceEEeeccccccccCCCCcee
Q 001482 58 PEAVAALQL-VKEPIGVVSVCGRARQGKSFILNQLLGRSSGFQVA-------STHRPCTKGLWLWSAPLKRTALDGTEYN 129 (1070)
Q Consensus 58 ~eal~~l~~-~~~~v~vvsv~G~~r~GKS~lln~l~~~~~gF~~~-------~~~~~~t~giw~~~~p~~~~~~~g~~~~ 129 (1070)
.+.++.|.. +.+ -++.++|+.|.|||+|+|.|++... +.++ .|...+|..-|+.. |+|
T Consensus 23 ~~g~~~l~~~l~~--k~~vl~G~SGvGKSSLiN~L~~~~~-~~t~~is~~~~rGkHTTt~~~l~~l-------~~g---- 88 (161)
T PF03193_consen 23 GEGIEELKELLKG--KTSVLLGQSGVGKSSLINALLPEAK-QKTGEISEKTGRGKHTTTHRELFPL-------PDG---- 88 (161)
T ss_dssp TTTHHHHHHHHTT--SEEEEECSTTSSHHHHHHHHHTSS-----S--------------SEEEEEE-------TTS----
T ss_pred CcCHHHHHHHhcC--CEEEEECCCCCCHHHHHHHHHhhcc-hhhhhhhcccCCCcccCCCeeEEec-------CCC----
Confidence 344555543 344 4678899999999999999998631 2221 22222333333322 222
Q ss_pred EEEeecccccccC
Q 001482 130 LLLLDSEGIDAYD 142 (1070)
Q Consensus 130 ~~llDteG~~~~~ 142 (1070)
.+++||||+.+++
T Consensus 89 ~~iIDTPGf~~~~ 101 (161)
T PF03193_consen 89 GYIIDTPGFRSFG 101 (161)
T ss_dssp EEEECSHHHHT--
T ss_pred cEEEECCCCCccc
Confidence 4789999986543
No 127
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=97.22 E-value=0.3 Score=49.47 Aligned_cols=40 Identities=10% Similarity=0.086 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001482 732 YEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDK 771 (1070)
Q Consensus 732 ~e~e~~~l~~ei~~l~~~le~~~~~i~~le~~l~~le~e~ 771 (1070)
++....++...+..+..++..+....+...++.......+
T Consensus 51 ~enr~~kdEE~~e~~e~qLkEAk~iaE~adrK~eEVarkL 90 (205)
T KOG1003|consen 51 IENRAQKLEEKMEAQEAQLKEAKHIAEKADRKYEEVARKL 90 (205)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444444343333333333
No 128
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=97.21 E-value=0.098 Score=51.77 Aligned_cols=56 Identities=32% Similarity=0.504 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001482 730 RSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERF 785 (1070)
Q Consensus 730 ~~~e~e~~~l~~ei~~l~~~le~~~~~i~~le~~l~~le~e~~~le~~l~~~~~~~ 785 (1070)
..++.++......+......+..+......++++...++.+...++.+|+....++
T Consensus 83 q~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~ 138 (143)
T PF12718_consen 83 QLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKY 138 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 33333344444444444555555555555555555555555555555444444443
No 129
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.19 E-value=0.75 Score=53.30 Aligned_cols=53 Identities=17% Similarity=0.320 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001482 831 MAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSKVALLEARVEEREKEI 883 (1070)
Q Consensus 831 ~~~ie~l~~~i~~Le~e~~~l~~el~~l~~~~~~~~~~~~~le~~v~ele~ei 883 (1070)
..+|..++.++..+++++..+-..+......+.-..+.+.....++..+-..+
T Consensus 317 iseiqkLkqqL~smErek~~l~anL~dtqt~le~T~~~l~~~~er~~~l~e~v 369 (772)
T KOG0999|consen 317 ISEIQKLKQQLMSMEREKAELLANLQDTQTQLEHTEGDLMEQRERVDRLTEHV 369 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhccchhHHHHHHHHHHHHHHHH
Confidence 46678888888888888888877766655443333333333333333333333
No 130
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=97.14 E-value=0.55 Score=50.95 Aligned_cols=54 Identities=20% Similarity=0.217 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001482 833 VIERVQRQIESLERQKTDLTNEVNRIRESELEALSKVALLEARVEEREKEIESL 886 (1070)
Q Consensus 833 ~ie~l~~~i~~Le~e~~~l~~el~~l~~~~~~~~~~~~~le~~v~ele~eie~L 886 (1070)
.+......-+.++..+..++.+-.-|++.+.++..+....++-|-.++.++.+.
T Consensus 208 kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~~~kek~ViniQ~~f~d~ 261 (305)
T PF14915_consen 208 KVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHNKADNKEKTVINIQDQFQDI 261 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 344444444555555555555555556666666655544555565666555544
No 131
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=97.10 E-value=0.0028 Score=70.32 Aligned_cols=74 Identities=19% Similarity=0.236 Sum_probs=45.1
Q ss_pred HHHHHHHcc---CCCEEEEEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeec
Q 001482 59 EAVAALQLV---KEPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDS 135 (1070)
Q Consensus 59 eal~~l~~~---~~~v~vvsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDt 135 (1070)
..+++|..+ +.+-..|.|+|..+.|||++.|.|+|... |.+++ ..++|...-+.... .+| ..+.++||
T Consensus 23 ~l~~~l~~l~~~~~~~~rIllvGktGVGKSSliNsIlG~~v-~~vs~-f~s~t~~~~~~~~~-----~~G--~~l~VIDT 93 (313)
T TIGR00991 23 KLLELLGKLKEEDVSSLTILVMGKGGVGKSSTVNSIIGERI-ATVSA-FQSEGLRPMMVSRT-----RAG--FTLNIIDT 93 (313)
T ss_pred HHHHHHHhcccccccceEEEEECCCCCCHHHHHHHHhCCCc-ccccC-CCCcceeEEEEEEE-----ECC--eEEEEEEC
Confidence 344455433 44666789999999999999999999752 11221 12222222111111 134 56889999
Q ss_pred cccccc
Q 001482 136 EGIDAY 141 (1070)
Q Consensus 136 eG~~~~ 141 (1070)
||+.+.
T Consensus 94 PGL~d~ 99 (313)
T TIGR00991 94 PGLIEG 99 (313)
T ss_pred CCCCch
Confidence 999754
No 132
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.10 E-value=0.2 Score=53.49 Aligned_cols=8 Identities=25% Similarity=0.360 Sum_probs=3.9
Q ss_pred cCcchHHH
Q 001482 978 MDTNDKVL 985 (1070)
Q Consensus 978 ~~~~~~~~ 985 (1070)
|-+++...
T Consensus 205 m~l~~~~~ 212 (239)
T COG1579 205 MKLPSQTL 212 (239)
T ss_pred eeecHHHH
Confidence 55544443
No 133
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=97.09 E-value=0.00077 Score=74.82 Aligned_cols=65 Identities=22% Similarity=0.277 Sum_probs=46.4
Q ss_pred EEEEeecCCCCChhHHHHHHhCCCCCccccC-------CCCcccceEEeeccccccccCCCCceeEEEeeccccccc
Q 001482 72 GVVSVCGRARQGKSFILNQLLGRSSGFQVAS-------THRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAY 141 (1070)
Q Consensus 72 ~vvsv~G~~r~GKS~lln~l~~~~~gF~~~~-------~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~~~ 141 (1070)
.-|.|+|..++|||+|+|.|++.. |.... ...++|.++-.....+. .+|..+.+.++||+|++..
T Consensus 5 f~I~vvG~sg~GKSTliN~L~~~~--~~~~~~~~~~~~~~~~~T~~i~~~~~~i~---~~g~~~~l~iiDTpGfgd~ 76 (276)
T cd01850 5 FNIMVVGESGLGKSTFINTLFNTK--LIPSDYPPDPAEEHIDKTVEIKSSKAEIE---ENGVKLKLTVIDTPGFGDN 76 (276)
T ss_pred EEEEEEcCCCCCHHHHHHHHHcCC--CccccCCCCccccccCCceEEEEEEEEEE---ECCEEEEEEEEecCCcccc
Confidence 358899999999999999999875 32221 12356777766554432 2466688999999999743
No 134
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=97.08 E-value=1.2 Score=53.67 Aligned_cols=23 Identities=13% Similarity=0.157 Sum_probs=12.9
Q ss_pred cchHHHhhhhhhhhccccccccc
Q 001482 945 LNETALGSKLRAVSHGKRARADD 967 (1070)
Q Consensus 945 ~~~~~l~~~l~~~~~~~~~~~~~ 967 (1070)
.....|..+|++.-+-|=|.+-.
T Consensus 639 ~e~~rl~~rlqelerdkNl~l~r 661 (739)
T PF07111_consen 639 EEGQRLTQRLQELERDKNLMLQR 661 (739)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHH
Confidence 33345666666666666555533
No 135
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.07 E-value=0.00085 Score=67.77 Aligned_cols=56 Identities=32% Similarity=0.371 Sum_probs=37.9
Q ss_pred EEEEEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeecccc
Q 001482 71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI 138 (1070)
Q Consensus 71 v~vvsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~ 138 (1070)
-..|.|+|.+++|||+|+|.|++.. .+.++++ +.|.--|.|.. + + ..+.|+||||+
T Consensus 100 ~~~~~~~G~~~~GKstlin~l~~~~-~~~~~~~--~~~t~~~~~~~-~------~--~~~~liDtPG~ 155 (155)
T cd01849 100 SITVGVIGYPNVGKSSVINALLNKL-KLKVGNV--PGTTTSQQEVK-L------D--NKIKLLDTPGI 155 (155)
T ss_pred CcEEEEEccCCCCHHHHHHHHHccc-cccccCC--CCcccceEEEE-e------c--CCEEEEECCCC
Confidence 3458899999999999999999864 2444443 23333355532 1 1 24788999995
No 136
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=97.07 E-value=0.0013 Score=69.68 Aligned_cols=63 Identities=24% Similarity=0.229 Sum_probs=39.6
Q ss_pred CCCEEEEEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeeccccc
Q 001482 68 KEPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (1070)
Q Consensus 68 ~~~v~vvsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~ 139 (1070)
+.++..|+|+|+.++|||+|+|.|++.. |.+.+.. ..|.+.+.....+ + + ...+.|+||+|+.
T Consensus 38 ~~~~~~I~iiG~~g~GKStLl~~l~~~~--~~~~~~~-~~t~~~~~~~~~~----~-~-~~~~~i~Dt~G~~ 100 (204)
T cd01878 38 RSGIPTVALVGYTNAGKSTLFNALTGAD--VYAEDQL-FATLDPTTRRLRL----P-D-GREVLLTDTVGFI 100 (204)
T ss_pred hcCCCeEEEECCCCCCHHHHHHHHhcch--hccCCcc-ceeccceeEEEEe----c-C-CceEEEeCCCccc
Confidence 3678899999999999999999999864 3222111 1122222221111 1 1 1368889999974
No 137
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=97.06 E-value=0.001 Score=67.49 Aligned_cols=60 Identities=18% Similarity=0.227 Sum_probs=44.5
Q ss_pred EEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeecccc
Q 001482 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI 138 (1070)
Q Consensus 74 vsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~ 138 (1070)
|.|+|+.++|||+|++.|.+....|. +....|.|+..+...++. .+|..+.+.++||+|.
T Consensus 3 i~vvG~~~~GKtsl~~~l~~~~~~~~---~~~~~t~~~~~~~~~~~~--~~~~~~~l~i~Dt~G~ 62 (164)
T cd04101 3 CAVVGDPAVGKTAFVQMFHSNGAVFP---KNYLMTTGCDFVVKEVPV--DTDNTVELFIFDSAGQ 62 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCcC---ccCCCceEEEEEEEEEEe--CCCCEEEEEEEECCCH
Confidence 78999999999999999986543352 334567888776554432 2466789999999994
No 138
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=97.03 E-value=0.001 Score=66.69 Aligned_cols=58 Identities=26% Similarity=0.419 Sum_probs=39.5
Q ss_pred EeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeeccccccc
Q 001482 75 SVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAY 141 (1070)
Q Consensus 75 sv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~~~ 141 (1070)
+++|..++|||+|+|.|++....| .+...++|...+....++ + .+.+.++||+|++..
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~--~~~~~~~t~~~~~~~~~~-----~--~~~~~i~DtpG~~~~ 58 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAI--VEDTPGVTRDRIYGEAEW-----G--GREFILIDTGGIEPD 58 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEe--ecCCCCceeCceeEEEEE-----C--CeEEEEEECCCCCCc
Confidence 479999999999999999875222 122335566555443322 2 267899999998754
No 139
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=96.95 E-value=0.0011 Score=67.94 Aligned_cols=55 Identities=35% Similarity=0.334 Sum_probs=39.5
Q ss_pred EEEEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeecccc
Q 001482 72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI 138 (1070)
Q Consensus 72 ~vvsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~ 138 (1070)
..|+|+|.+++|||+|+|.|+|.. .+.+++. -.+|++ |-|.. + + ..+.|+||||+
T Consensus 118 ~~~~~vG~pnvGKSslin~l~~~~-~~~~~~~-pg~T~~-~~~~~-~------~--~~~~l~DtPGi 172 (172)
T cd04178 118 ITVGVVGFPNVGKSSLINSLKRSR-ACNVGAT-PGVTKS-MQEVH-L------D--KKVKLLDSPGI 172 (172)
T ss_pred cEEEEEcCCCCCHHHHHHHHhCcc-cceecCC-CCeEcc-eEEEE-e------C--CCEEEEECcCC
Confidence 468999999999999999999864 3566554 245666 34432 1 1 24789999995
No 140
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=96.92 E-value=1.7 Score=52.82 Aligned_cols=42 Identities=19% Similarity=0.278 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHhhhhh
Q 001482 914 AANAMAERLSLEVQSAQAKLDEMQQELTKARLNETALGSKLR 955 (1070)
Q Consensus 914 ea~~r~~~L~~ql~~~~~~l~~le~el~~~~~~~~~l~~~l~ 955 (1070)
+.+.|+..|..-+-.-+..|+.+-.+-..+.+....+..+++
T Consensus 389 elE~rl~~lt~~Li~KQ~~lE~l~~ek~al~lqlErl~~~l~ 430 (511)
T PF09787_consen 389 ELESRLTQLTESLIQKQTQLESLGSEKNALRLQLERLETQLK 430 (511)
T ss_pred hHHHHHhhccHHHHHHHHHHHHHHhhhhhccccHHHHHHHHH
Confidence 345566666666666688888888888888888888888888
No 141
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=96.91 E-value=2.7 Score=54.99 Aligned_cols=6 Identities=17% Similarity=0.456 Sum_probs=2.2
Q ss_pred HHHHHH
Q 001482 839 RQIESL 844 (1070)
Q Consensus 839 ~~i~~L 844 (1070)
.+|.++
T Consensus 340 ~~IAdl 345 (1109)
T PRK10929 340 TEMAQL 345 (1109)
T ss_pred HHHHHH
Confidence 333333
No 142
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=96.90 E-value=0.003 Score=64.39 Aligned_cols=54 Identities=22% Similarity=0.261 Sum_probs=35.3
Q ss_pred EEeecCCCCChhHHHHHHhCCCCCccccC---CCCcccceEEeeccccccccCCCCceeEEEeeccccc
Q 001482 74 VSVCGRARQGKSFILNQLLGRSSGFQVAS---THRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (1070)
Q Consensus 74 vsv~G~~r~GKS~lln~l~~~~~gF~~~~---~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~ 139 (1070)
|+|+|..++|||+|+|.|.+.. +.++. +....+.|.-.+ ++ ...+.|+||+|+.
T Consensus 3 v~ivG~~~~GKStl~~~l~~~~--~~v~~~~~~t~~~~~~~~~~---------~~-~~~~~l~DtpG~~ 59 (170)
T cd01898 3 VGLVGLPNAGKSTLLSAISNAK--PKIADYPFTTLVPNLGVVRV---------DD-GRSFVVADIPGLI 59 (170)
T ss_pred eEEECCCCCCHHHHHHHHhcCC--ccccCCCccccCCcceEEEc---------CC-CCeEEEEecCccc
Confidence 7899999999999999999764 22221 111223344322 11 1468899999975
No 143
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=96.89 E-value=0.0015 Score=68.89 Aligned_cols=22 Identities=36% Similarity=0.567 Sum_probs=20.2
Q ss_pred EEeecCCCCChhHHHHHHhCCC
Q 001482 74 VSVCGRARQGKSFILNQLLGRS 95 (1070)
Q Consensus 74 vsv~G~~r~GKS~lln~l~~~~ 95 (1070)
|+|+|+.++|||+|+|.|+|..
T Consensus 4 I~i~G~~g~GKSSLin~L~g~~ 25 (197)
T cd04104 4 IAVTGESGAGKSSFINALRGVG 25 (197)
T ss_pred EEEECCCCCCHHHHHHHHhccC
Confidence 7899999999999999999853
No 144
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=96.88 E-value=0.0026 Score=64.20 Aligned_cols=60 Identities=20% Similarity=0.270 Sum_probs=35.6
Q ss_pred EEEeecCCCCChhHHHHHHhCCC-CCccccCCCCcccceEEeeccccccccCCCCceeEEEeeccccc
Q 001482 73 VVSVCGRARQGKSFILNQLLGRS-SGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (1070)
Q Consensus 73 vvsv~G~~r~GKS~lln~l~~~~-~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~ 139 (1070)
||+|+|.+++|||+|+|.|.|.. ..|.-.. ....|.++-.....+ ++ ...+.++||+|..
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~-~~~~t~~~~~~~~~~----~~--~~~~~~~DtpG~~ 62 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEK-KRGITIDLGFAYLDL----PS--GKRLGFIDVPGHE 62 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhh-ccCceEEeeeEEEEe----cC--CcEEEEEECCChH
Confidence 79999999999999999999753 2232110 111232222111111 11 2468889999963
No 145
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=96.88 E-value=1 Score=49.63 Aligned_cols=64 Identities=17% Similarity=0.256 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 001482 716 TTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKA-QSFEREARIMEQDKVYLEQKYK 779 (1070)
Q Consensus 716 ~~l~~el~e~e~ki~~~e~e~~~l~~ei~~l~~~le~~~~~i-~~le~~l~~le~e~~~le~~l~ 779 (1070)
..+...|..+..+...+...+..+..+.-++...++.-...+ ..+.+++..+..+...++.++.
T Consensus 138 ~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~ 202 (310)
T PF09755_consen 138 NKLQKKIERLEKEKSAKQEELERLRREKVDLENTLEQEQEALVNRLWKQMDKLEAEKRRLQEKLE 202 (310)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344444444444444444445555555555555555544333 3345566666666666665544
No 146
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=96.88 E-value=0.0016 Score=70.20 Aligned_cols=61 Identities=26% Similarity=0.342 Sum_probs=44.6
Q ss_pred CCEEEEEeecCCCCChhHHHHHHhCCCCCccccCCCCccc---ceEEeeccccccccCCCCceeEEEeeccccccc
Q 001482 69 EPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCT---KGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAY 141 (1070)
Q Consensus 69 ~~v~vvsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t---~giw~~~~p~~~~~~~g~~~~~~llDteG~~~~ 141 (1070)
..+.=|+|+|++..|||+|-|+++|.. .|.++.-+..+| -||.-. | +..++|+||||+-+.
T Consensus 70 ~k~L~vavIG~PNvGKStLtN~mig~k-v~~vS~K~~TTr~~ilgi~ts----------~-eTQlvf~DTPGlvs~ 133 (379)
T KOG1423|consen 70 QKSLYVAVIGAPNVGKSTLTNQMIGQK-VSAVSRKVHTTRHRILGIITS----------G-ETQLVFYDTPGLVSK 133 (379)
T ss_pred ceEEEEEEEcCCCcchhhhhhHhhCCc-cccccccccceeeeeeEEEec----------C-ceEEEEecCCccccc
Confidence 467789999999999999999999985 356654433333 444421 2 368999999998654
No 147
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=96.88 E-value=2.2 Score=53.57 Aligned_cols=39 Identities=26% Similarity=0.413 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001482 565 RINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQ 603 (1070)
Q Consensus 565 ~i~~L~~~~~~Le~~~~~l~~eLe~~~~el~e~k~k~e~ 603 (1070)
++..++.++..+..+...+..++..++.++.+...+++.
T Consensus 210 ~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~ 248 (650)
T TIGR03185 210 EIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLES 248 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444443333333333
No 148
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=96.86 E-value=0.0034 Score=66.15 Aligned_cols=60 Identities=32% Similarity=0.529 Sum_probs=39.8
Q ss_pred EEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeeccccccc
Q 001482 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAY 141 (1070)
Q Consensus 74 vsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~~~ 141 (1070)
|+|+|..++|||.|+|.+++.. |.-. ..| |.|.-.+...+ ..+|..+.+.|+||+|+...
T Consensus 3 I~ivG~~~vGKTsLi~~~~~~~--f~~~--~~p-t~~~~~~~~~i---~~~~~~~~l~i~Dt~G~~~~ 62 (198)
T cd04142 3 VAVLGAPGVGKTAIVRQFLAQE--FPEE--YIP-TEHRRLYRPAV---VLSGRVYDLHILDVPNMQRY 62 (198)
T ss_pred EEEECCCCCcHHHHHHHHHcCC--CCcc--cCC-ccccccceeEE---EECCEEEEEEEEeCCCcccC
Confidence 6899999999999999999865 6322 122 33322221111 12466688999999997643
No 149
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=96.85 E-value=0.002 Score=64.04 Aligned_cols=59 Identities=32% Similarity=0.428 Sum_probs=36.2
Q ss_pred eecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeecccccccC
Q 001482 76 VCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYD 142 (1070)
Q Consensus 76 v~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~~~~ 142 (1070)
|+|+.++|||+|+|.|++.. +.......++|...-.+...+ +....+.|+||+|+....
T Consensus 1 i~G~~gsGKstl~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~Dt~g~~~~~ 59 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQE--VAIVSPVPGTTTDPVEYVWEL------GPLGPVVLIDTPGIDEAG 59 (163)
T ss_pred CcCCCCCCHHHHHHHHhCcc--ccccCCCCCcEECCeEEEEEe------cCCCcEEEEECCCCCccc
Confidence 68999999999999999874 221112223333332222111 113578999999987543
No 150
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=96.83 E-value=0.0041 Score=63.28 Aligned_cols=57 Identities=23% Similarity=0.263 Sum_probs=40.0
Q ss_pred EEEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeeccccc
Q 001482 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (1070)
Q Consensus 73 vvsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~ 139 (1070)
.|.|+|..++|||+|+|.|.+.. |.+++ ....|.++-.+...+ ..+.+.++||+|+.
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~--~~~~~-~~~~t~~~~~~~~~~-------~~~~~~i~Dt~G~~ 58 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAK--PEVAP-YPFTTKSLFVGHFDY-------KYLRWQVIDTPGLL 58 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCC--CccCC-CCCcccceeEEEEcc-------CceEEEEEECCCcC
Confidence 47899999999999999999876 54332 112355555444321 23678999999975
No 151
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=96.82 E-value=1.9 Score=51.98 Aligned_cols=64 Identities=14% Similarity=0.143 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001482 739 QKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKA 802 (1070)
Q Consensus 739 l~~ei~~l~~~le~~~~~i~~le~~l~~le~e~~~le~~l~~~~~~~ee~~e~l~~~e~e~~~~ 802 (1070)
|+.++.........+.......+..+..+..-+.....-+......++.+..++..+...+.-+
T Consensus 378 LQ~ELsrAqea~~~lqqq~~~aee~Lk~v~eav~S~q~~L~s~ma~ve~a~aRL~sL~~RlSyA 441 (739)
T PF07111_consen 378 LQAELSRAQEARRRLQQQTASAEEQLKLVSEAVSSSQQWLESQMAKVEQALARLPSLSNRLSYA 441 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 4444444444444444444444444444444444444444444444444444555544444433
No 152
>PRK15494 era GTPase Era; Provisional
Probab=96.80 E-value=0.0044 Score=70.99 Aligned_cols=57 Identities=26% Similarity=0.469 Sum_probs=39.7
Q ss_pred CCEEEEEeecCCCCChhHHHHHHhCCCCCccc-cCCCCccc----ceEEeeccccccccCCCCceeEEEeeccccc
Q 001482 69 EPIGVVSVCGRARQGKSFILNQLLGRSSGFQV-ASTHRPCT----KGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (1070)
Q Consensus 69 ~~v~vvsv~G~~r~GKS~lln~l~~~~~gF~~-~~~~~~~t----~giw~~~~p~~~~~~~g~~~~~~llDteG~~ 139 (1070)
.+..-|+|+|.+++|||+|+|.|+|.. |.. ++.. .+| .|++.| +| ..++|+||+|+.
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k--~~ivs~k~-~tTr~~~~~~~~~---------~~--~qi~~~DTpG~~ 111 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEK--LSIVTPKV-QTTRSIITGIITL---------KD--TQVILYDTPGIF 111 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCc--eeeccCCC-CCccCcEEEEEEe---------CC--eEEEEEECCCcC
Confidence 355679999999999999999999875 432 2221 223 344443 12 468999999975
No 153
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=96.79 E-value=1.7 Score=50.90 Aligned_cols=21 Identities=14% Similarity=0.354 Sum_probs=9.9
Q ss_pred HHHHHHHhhHHHHHHHHHHHH
Q 001482 514 SSLMLKYRSIEDNMKLLKKQL 534 (1070)
Q Consensus 514 ~~l~~~l~~~~~~l~~L~k~l 534 (1070)
.+....+...+..+...++++
T Consensus 100 ~kA~~~i~~ie~~l~~iE~~i 120 (570)
T COG4477 100 NKAKHEIDDIEQQLTLIEEDI 120 (570)
T ss_pred HHhhhhHhhHHHHHHHHHHHH
Confidence 344444444444444444444
No 154
>PRK12289 GTPase RsgA; Reviewed
Probab=96.78 E-value=0.0022 Score=73.31 Aligned_cols=60 Identities=28% Similarity=0.433 Sum_probs=39.5
Q ss_pred EEEeecCCCCChhHHHHHHhCCCCCccccCC-----C-CcccceEEeeccccccccCCCCceeEEEeecccccccCC
Q 001482 73 VVSVCGRARQGKSFILNQLLGRSSGFQVAST-----H-RPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYDQ 143 (1070)
Q Consensus 73 vvsv~G~~r~GKS~lln~l~~~~~gF~~~~~-----~-~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~~~~~ 143 (1070)
++.|+|+.+.|||+|+|.|++... ..++.. . ..+|..+-++.- ++| .+|+||||+..++.
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~-~~t~~vs~~~~rGrHTT~~~~l~~l------~~g----~~liDTPG~~~~~l 239 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVE-LRVGKVSGKLGRGRHTTRHVELFEL------PNG----GLLADTPGFNQPDL 239 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccc-cccccccCCCCCCCCcCceeEEEEC------CCC----cEEEeCCCcccccc
Confidence 478999999999999999997531 222211 1 124666654432 233 27899999976554
No 155
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=96.77 E-value=1.5 Score=50.03 Aligned_cols=19 Identities=26% Similarity=0.263 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001482 615 VCSEIEVLKSRSTAAEARL 633 (1070)
Q Consensus 615 l~~Ei~~Lk~~l~~le~~l 633 (1070)
.+.+|..|+...+.+..++
T Consensus 342 kEeei~~L~~~~d~L~~q~ 360 (622)
T COG5185 342 KEEEIKALQSNIDELHKQL 360 (622)
T ss_pred HHHHHHHHHhhHHHHHHHH
Confidence 3444444444444444443
No 156
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=96.76 E-value=2.3 Score=52.09 Aligned_cols=35 Identities=23% Similarity=0.464 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001482 909 RRSRAAANAMAERLSLEVQSAQAKLDEMQQELTKA 943 (1070)
Q Consensus 909 r~~~~ea~~r~~~L~~ql~~~~~~l~~le~el~~~ 943 (1070)
.....++...++.|+.+++...+.+..++..+.+.
T Consensus 558 kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~ 592 (698)
T KOG0978|consen 558 KKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAEL 592 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444444444333333
No 157
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=96.74 E-value=0.0036 Score=62.52 Aligned_cols=60 Identities=27% Similarity=0.397 Sum_probs=36.8
Q ss_pred EEEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeeccccccc
Q 001482 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAY 141 (1070)
Q Consensus 73 vvsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~~~ 141 (1070)
-|+++|+.++|||+|+|.|++.. +.......++|.-+.- ..+. .+ ...+.++||+|+...
T Consensus 3 ~i~l~G~~~~GKstli~~l~~~~--~~~~~~~~~~~~~~~~--~~~~---~~--~~~~~i~DtpG~~~~ 62 (157)
T cd04164 3 KVVIVGKPNVGKSSLLNALAGRD--RAIVSDIAGTTRDVIE--ESID---IG--GIPVRLIDTAGIRET 62 (157)
T ss_pred EEEEECCCCCCHHHHHHHHHCCc--eEeccCCCCCccceEE--EEEE---eC--CEEEEEEECCCcCCC
Confidence 47899999999999999999875 3221122223322211 1111 11 246788999998643
No 158
>COG1084 Predicted GTPase [General function prediction only]
Probab=96.74 E-value=0.0086 Score=65.76 Aligned_cols=102 Identities=18% Similarity=0.200 Sum_probs=66.6
Q ss_pred eeeCHHHHHHHHcc---CCCEEEEEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeE
Q 001482 54 FRMDPEAVAALQLV---KEPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNL 130 (1070)
Q Consensus 54 ~~~~~eal~~l~~~---~~~v~vvsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~ 130 (1070)
|..-.+|...|..+ +...--|-|+|.+..|||+|++.|-+.. -.+.+- -=+|+||.+..--. ++ ..+
T Consensus 148 L~fL~~~r~~l~~LP~Idp~~pTivVaG~PNVGKSSlv~~lT~Ak--pEvA~Y-PFTTK~i~vGhfe~-----~~--~R~ 217 (346)
T COG1084 148 LEFLRKARDHLKKLPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAK--PEVAPY-PFTTKGIHVGHFER-----GY--LRI 217 (346)
T ss_pred HHHHHHHHHHHhcCCCCCCCCCeEEEecCCCCcHHHHHHHHhcCC--CccCCC-CccccceeEeeeec-----CC--ceE
Confidence 44445666666653 4456677889999999999999999875 222221 12689999876422 12 356
Q ss_pred EEeecccccccCCCCcc---hhHHHHHHHhhhhheeecC
Q 001482 131 LLLDSEGIDAYDQTGTY---STQIFSLAVLLSSMFIYNQ 166 (1070)
Q Consensus 131 ~llDteG~~~~~~~~~~---d~~ifaL~~llSS~~IyN~ 166 (1070)
=++||||+-+..-..-+ ...|.||.- |-++++|=.
T Consensus 218 QvIDTPGlLDRPl~ErN~IE~qAi~AL~h-l~~~IlF~~ 255 (346)
T COG1084 218 QVIDTPGLLDRPLEERNEIERQAILALRH-LAGVILFLF 255 (346)
T ss_pred EEecCCcccCCChHHhcHHHHHHHHHHHH-hcCeEEEEE
Confidence 77899999754333222 467888875 566666643
No 159
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=96.72 E-value=0.0024 Score=63.42 Aligned_cols=55 Identities=25% Similarity=0.346 Sum_probs=35.8
Q ss_pred EEEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeeccccc
Q 001482 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (1070)
Q Consensus 73 vvsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~ 139 (1070)
.|.++|.+++|||+|+|.|++... ..++... .+|...+ | +.. ++ .+.++||||+.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~-~~~~~~~-~~~~~~~-~---~~~---~~---~~~i~DtpG~~ 139 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKK-VSVSATP-GKTKHFQ-T---IFL---TP---TITLCDCPGLV 139 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc-eeeCCCC-CcccceE-E---EEe---CC---CEEEEECCCcC
Confidence 577899999999999999998752 2333322 2344432 2 111 12 46889999974
No 160
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=96.72 E-value=0.48 Score=46.35 Aligned_cols=89 Identities=19% Similarity=0.199 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001482 792 CKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSKVAL 871 (1070)
Q Consensus 792 l~~~e~e~~~~~e~~~~l~~e~~~a~~ek~~~q~~~~e~~~~ie~l~~~i~~Le~e~~~l~~el~~l~~~~~~~~~~~~~ 871 (1070)
++..+.+...+...+..+.+++..++..+..+........+.+..+..++..+..++.++..++..++.+...+...+..
T Consensus 12 LK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~ 91 (140)
T PF10473_consen 12 LKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQK 91 (140)
T ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444444444444433333333333345566666777777777777777777666655554444444
Q ss_pred HHHHHHHHH
Q 001482 872 LEARVEERE 880 (1070)
Q Consensus 872 le~~v~ele 880 (1070)
..++|.+++
T Consensus 92 ~q~kv~eLE 100 (140)
T PF10473_consen 92 KQEKVSELE 100 (140)
T ss_pred HHHHHHHHH
Confidence 444444433
No 161
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=96.70 E-value=0.0042 Score=64.01 Aligned_cols=67 Identities=24% Similarity=0.330 Sum_probs=37.8
Q ss_pred EEeecCCCCChhHHHHHHhCCCCCcccc-------CCC-CcccceEEeecccccc--ccCCCCceeEEEeecccccc
Q 001482 74 VSVCGRARQGKSFILNQLLGRSSGFQVA-------STH-RPCTKGLWLWSAPLKR--TALDGTEYNLLLLDSEGIDA 140 (1070)
Q Consensus 74 vsv~G~~r~GKS~lln~l~~~~~gF~~~-------~~~-~~~t~giw~~~~p~~~--~~~~g~~~~~~llDteG~~~ 140 (1070)
|+++|..++|||+|+|.|++....|.-+ ++. ..-+.|+=+....... ...++..+.+.|+||+|...
T Consensus 3 i~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 79 (179)
T cd01890 3 FSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVD 79 (179)
T ss_pred EEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChh
Confidence 7899999999999999999754222110 000 0012233222111100 00135568889999999753
No 162
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=96.70 E-value=0.002 Score=72.93 Aligned_cols=74 Identities=19% Similarity=0.311 Sum_probs=44.7
Q ss_pred CCCEEEEEeecCCCCChhHHHHHHhCC----C--CCc--------cccCCCC---cccceEEeeccccccccCCCCceeE
Q 001482 68 KEPIGVVSVCGRARQGKSFILNQLLGR----S--SGF--------QVASTHR---PCTKGLWLWSAPLKRTALDGTEYNL 130 (1070)
Q Consensus 68 ~~~v~vvsv~G~~r~GKS~lln~l~~~----~--~gF--------~~~~~~~---~~t~giw~~~~p~~~~~~~g~~~~~ 130 (1070)
++.+ -|+|+||-|||||+|+|.|++. . +.+ =+.++.. .+|.=.++-.+.......+|-+..|
T Consensus 15 ~G~I-yIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~V 93 (492)
T TIGR02836 15 QGDI-YIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKV 93 (492)
T ss_pred CCcE-EEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccE
Confidence 4555 4899999999999999999987 2 111 0001111 1222233222222233345667889
Q ss_pred EEeecccccccC
Q 001482 131 LLLDSEGIDAYD 142 (1070)
Q Consensus 131 ~llDteG~~~~~ 142 (1070)
.|+||-|++..+
T Consensus 94 rlIDcvG~~v~G 105 (492)
T TIGR02836 94 RLVDCVGYTVKG 105 (492)
T ss_pred EEEECCCcccCC
Confidence 999999998643
No 163
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=96.69 E-value=0.0027 Score=63.00 Aligned_cols=57 Identities=32% Similarity=0.461 Sum_probs=39.8
Q ss_pred EEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeecccc
Q 001482 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI 138 (1070)
Q Consensus 74 vsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~ 138 (1070)
|+++|..++|||+|+|.|++.. |..... ...|..+|..... .++..+.+.++||+|.
T Consensus 4 i~~~G~~~~GKstl~~~l~~~~--~~~~~~-~~~~~~~~~~~~~-----~~~~~~~~~~~D~~G~ 60 (161)
T TIGR00231 4 IVIVGDPNVGKSTLLNRLLGNK--FITEYK-PGTTRNYVTTVIE-----EDGKTYKFNLLDTAGQ 60 (161)
T ss_pred EEEECCCCCCHHHHHHHHhCCC--CcCcCC-CCceeeeeEEEEE-----ECCEEEEEEEEECCCc
Confidence 7899999999999999999876 544332 2344555543222 2343477899999994
No 164
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=96.66 E-value=0.93 Score=46.24 Aligned_cols=25 Identities=24% Similarity=0.274 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHH
Q 001482 694 LAEKEEEMKEKATKIEHAEQCLTTL 718 (1070)
Q Consensus 694 i~e~e~ei~el~~kie~~e~~l~~l 718 (1070)
+...++.-..+...+..+..++..+
T Consensus 31 ve~~ee~na~L~~e~~~L~~q~~s~ 55 (193)
T PF14662_consen 31 VETAEEGNAQLAEEITDLRKQLKSL 55 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333343333333333
No 165
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=96.66 E-value=0.0041 Score=69.59 Aligned_cols=60 Identities=28% Similarity=0.319 Sum_probs=40.9
Q ss_pred CEEEEEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeeccccccc
Q 001482 70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAY 141 (1070)
Q Consensus 70 ~v~vvsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~~~ 141 (1070)
+...|.|+|.+++|||+|+|.|.|... ..+++. -.+|+++ -|... + ..+.|+||||+...
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~~~-~~~~~~-~g~T~~~-~~~~~-------~--~~~~l~DtPGi~~~ 179 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGKKI-AKTGNR-PGVTKAQ-QWIKL-------G--KGLELLDTPGILWP 179 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCc-cccCCC-CCeEEEE-EEEEe-------C--CcEEEEECCCcCCC
Confidence 445799999999999999999998752 233332 2356664 23211 1 14789999999644
No 166
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=96.66 E-value=1.8 Score=49.50 Aligned_cols=72 Identities=14% Similarity=0.269 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001482 735 EISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELA 806 (1070)
Q Consensus 735 e~~~l~~ei~~l~~~le~~~~~i~~le~~l~~le~e~~~le~~l~~~~~~~ee~~e~l~~~e~e~~~~~e~~ 806 (1070)
.++.|+.-+......|...+.+.+.++-+++.+......|+++|..+.++......++-.+++.+.+..+++
T Consensus 391 ~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQqKnksvsqclEmdk~LskKeeev 462 (527)
T PF15066_consen 391 TLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMTEIQQKNKSVSQCLEMDKTLSKKEEEV 462 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHHH
Confidence 333444444555555555555555555555555555666666665555555555555555544444433333
No 167
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=96.62 E-value=0.0019 Score=67.54 Aligned_cols=103 Identities=19% Similarity=0.330 Sum_probs=59.4
Q ss_pred CCEEEEEeecCCCCChhHHHHHHhCCCCCccc-----------cC----CCCcccceEEeeccccccccCCCCceeEEEe
Q 001482 69 EPIGVVSVCGRARQGKSFILNQLLGRSSGFQV-----------AS----THRPCTKGLWLWSAPLKRTALDGTEYNLLLL 133 (1070)
Q Consensus 69 ~~v~vvsv~G~~r~GKS~lln~l~~~~~gF~~-----------~~----~~~~~t~giw~~~~p~~~~~~~g~~~~~~ll 133 (1070)
+++.+|+|+|+.++|||+|++.|++......- .. .....|..++.+... .+.....+.|+
T Consensus 1 k~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~-----~~~~~~~i~~i 75 (188)
T PF00009_consen 1 KNIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFE-----KNENNRKITLI 75 (188)
T ss_dssp STEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEE-----BTESSEEEEEE
T ss_pred CCEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhccccccccccccc-----ccccccceeec
Confidence 36789999999999999999999864321110 00 012334444443322 01234689999
Q ss_pred ecccccccCCCCcchhHHHHHHHhhhhheeecCCCCCCHHHhhhhHHH
Q 001482 134 DSEGIDAYDQTGTYSTQIFSLAVLLSSMFIYNQMGGIDESAIDRLSLV 181 (1070)
Q Consensus 134 DteG~~~~~~~~~~d~~ifaL~~llSS~~IyN~~~~i~~~~l~~L~~~ 181 (1070)
||||...+ ....+.++...=.-++|......++......+.+.
T Consensus 76 DtPG~~~f-----~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~ 118 (188)
T PF00009_consen 76 DTPGHEDF-----IKEMIRGLRQADIAILVVDANDGIQPQTEEHLKIL 118 (188)
T ss_dssp EESSSHHH-----HHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHH
T ss_pred ccccccce-----eecccceecccccceeeeecccccccccccccccc
Confidence 99995321 12334444433334466666666777666665544
No 168
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=96.60 E-value=0.002 Score=64.57 Aligned_cols=37 Identities=27% Similarity=0.518 Sum_probs=29.1
Q ss_pred EEEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeecccc
Q 001482 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPL 118 (1070)
Q Consensus 73 vvsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~ 118 (1070)
+|+|+||.++|||||||.+.| |.. |.-..||+-..-+
T Consensus 27 ~vAi~GpSGaGKSTLLnLIAG----F~~-----P~~G~i~i~g~d~ 63 (231)
T COG3840 27 IVAILGPSGAGKSTLLNLIAG----FET-----PASGEILINGVDH 63 (231)
T ss_pred EEEEECCCCccHHHHHHHHHh----ccC-----CCCceEEEcCeec
Confidence 799999999999999999986 422 4456788876544
No 169
>PRK09039 hypothetical protein; Validated
Probab=96.60 E-value=0.54 Score=53.82 Aligned_cols=15 Identities=13% Similarity=0.390 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHhH
Q 001482 694 LAEKEEEMKEKATKI 708 (1070)
Q Consensus 694 i~e~e~ei~el~~ki 708 (1070)
+...++++.++..+|
T Consensus 48 i~~~~~eL~~L~~qI 62 (343)
T PRK09039 48 ISGKDSALDRLNSQI 62 (343)
T ss_pred HhhHHHHHHHHHHHH
Confidence 333333333333333
No 170
>PRK12288 GTPase RsgA; Reviewed
Probab=96.60 E-value=0.0018 Score=74.02 Aligned_cols=59 Identities=25% Similarity=0.351 Sum_probs=36.4
Q ss_pred EEEeecCCCCChhHHHHHHhCCCCCccccC-----CCCcc-cceEEeeccccccccCCCCceeEEEeecccccccC
Q 001482 73 VVSVCGRARQGKSFILNQLLGRSSGFQVAS-----THRPC-TKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYD 142 (1070)
Q Consensus 73 vvsv~G~~r~GKS~lln~l~~~~~gF~~~~-----~~~~~-t~giw~~~~p~~~~~~~g~~~~~~llDteG~~~~~ 142 (1070)
++.++|+.+.|||+|+|.|++... ..+|. +...+ |...-+..- +.| .+|+||||+..++
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~-~~t~~is~~~~rGrHTT~~~~l~~l------~~~----~~liDTPGir~~~ 271 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAE-ILVGDVSDNSGLGQHTTTAARLYHF------PHG----GDLIDSPGVREFG 271 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccc-eeeccccCcCCCCcCceeeEEEEEe------cCC----CEEEECCCCCccc
Confidence 467899999999999999998631 22222 11222 434333322 222 2589999986543
No 171
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=96.58 E-value=0.0033 Score=63.49 Aligned_cols=57 Identities=23% Similarity=0.318 Sum_probs=37.5
Q ss_pred EEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeeccccccc
Q 001482 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAY 141 (1070)
Q Consensus 74 vsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~~~ 141 (1070)
|+++|+.++|||+|+|.|++... .+..++...+|.-++.+..+ + .+.++||+|++..
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~-~~~~~~~~~~t~~~~~~~~~-------~---~~~~~D~~g~~~~ 58 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKK-LARTSKTPGKTQLINFFNVN-------D---KFRLVDLPGYGYA 58 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCc-eeeecCCCCcceeEEEEEcc-------C---eEEEecCCCcccc
Confidence 78999999999999999995331 11112222345555554321 1 6889999998754
No 172
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=96.57 E-value=0.0032 Score=73.21 Aligned_cols=57 Identities=21% Similarity=0.240 Sum_probs=41.0
Q ss_pred EEEEEeecCCCCChhHHHHHHhCCCCCccccC---CCCcccceEEeeccccccccCCCCceeEEEeeccccc
Q 001482 71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVAS---THRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (1070)
Q Consensus 71 v~vvsv~G~~r~GKS~lln~l~~~~~gF~~~~---~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~ 139 (1070)
++=|+|+|.+.+|||||||.|.+... .+++ |+.....|++-+.. ...++|+||||+.
T Consensus 159 iadValVG~PNaGKSTLln~Lt~~k~--~vs~~p~TT~~p~~Giv~~~~----------~~~i~~vDtPGi~ 218 (390)
T PRK12298 159 LADVGLLGLPNAGKSTFIRAVSAAKP--KVADYPFTTLVPNLGVVRVDD----------ERSFVVADIPGLI 218 (390)
T ss_pred cccEEEEcCCCCCHHHHHHHHhCCcc--cccCCCCCccCcEEEEEEeCC----------CcEEEEEeCCCcc
Confidence 55799999999999999999998652 3332 23334577775521 1358999999975
No 173
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=96.56 E-value=1.2 Score=46.37 Aligned_cols=17 Identities=24% Similarity=0.321 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001482 870 ALLEARVEEREKEIESL 886 (1070)
Q Consensus 870 ~~le~~v~ele~eie~L 886 (1070)
.++...+..+..++..|
T Consensus 167 ~~~~~~~~~l~~ei~~L 183 (194)
T PF15619_consen 167 KEAQEEVKSLQEEIQRL 183 (194)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444444
No 174
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=96.56 E-value=0.0036 Score=65.54 Aligned_cols=59 Identities=24% Similarity=0.271 Sum_probs=39.7
Q ss_pred CEEEEEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeeccccc
Q 001482 70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (1070)
Q Consensus 70 ~v~vvsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~ 139 (1070)
.+.-|+|+|..++|||+|+|.|++...-..+.++ -.+|.++-.+.. ...+.|+||+|+.
T Consensus 23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~-~~~t~~~~~~~~----------~~~l~l~DtpG~~ 81 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKT-PGRTQLINFFEV----------NDKLRLVDLPGYG 81 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCC-CCceeEEEEEec----------CCeEEEeCCCCCC
Confidence 4556999999999999999999986411122222 245655533321 1468999999975
No 175
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=96.56 E-value=0.0059 Score=61.99 Aligned_cols=60 Identities=18% Similarity=0.295 Sum_probs=38.4
Q ss_pred EEEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeeccccc
Q 001482 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (1070)
Q Consensus 73 vvsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~ 139 (1070)
+|+|+|..++|||+|+|.|.+.. |... ....+|..+.....+.. .+..+.+.++||+|..
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~--~~~~-~~~~~t~~~~~~~~~~~----~~~~~~~~iiDtpG~~ 61 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTN--VAAG-EAGGITQHIGAFEVPAE----VLKIPGITFIDTPGHE 61 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcc--cccc-cCCCeEEeeccEEEecc----cCCcceEEEEeCCCcH
Confidence 59999999999999999999765 4332 11223444432222211 0234678899999964
No 176
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=96.54 E-value=2.5 Score=49.55 Aligned_cols=31 Identities=19% Similarity=0.237 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 001482 503 KRLIDQIGSERSSLMLKYRSIEDNMKLLKKQ 533 (1070)
Q Consensus 503 ~r~~~~~~~~~~~l~~~l~~~~~~l~~L~k~ 533 (1070)
+..++++.+....+...+....+.+..|..+
T Consensus 103 ~~~i~~ie~~l~~iE~~i~~il~~l~~Lv~s 133 (570)
T COG4477 103 KHEIDDIEQQLTLIEEDIEQILEDLNELVES 133 (570)
T ss_pred hhhHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444333
No 177
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=96.53 E-value=0.0036 Score=63.18 Aligned_cols=57 Identities=23% Similarity=0.341 Sum_probs=37.5
Q ss_pred EEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeecccc
Q 001482 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI 138 (1070)
Q Consensus 74 vsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~ 138 (1070)
|.++|+.++|||+|+|.|++.. |.... +.|.|+-.....+. .+|..+.+.++||+|.
T Consensus 3 i~liG~~~~GKSsli~~l~~~~--~~~~~---~~~~~~~~~~~~~~---~~~~~~~l~~~D~~G~ 59 (161)
T cd01861 3 LVFLGDQSVGKTSIITRFMYDT--FDNQY---QATIGIDFLSKTMY---LEDKTVRLQLWDTAGQ 59 (161)
T ss_pred EEEECCCCCCHHHHHHHHHcCC--CCccC---CCceeeeEEEEEEE---ECCEEEEEEEEECCCc
Confidence 7899999999999999999876 54422 22444321111111 1244577899999994
No 178
>PRK11058 GTPase HflX; Provisional
Probab=96.52 E-value=0.0064 Score=71.59 Aligned_cols=56 Identities=21% Similarity=0.243 Sum_probs=38.2
Q ss_pred EEEEEeecCCCCChhHHHHHHhCCCCCccc----cCCCCcccceEEeeccccccccCCCCceeEEEeeccccc
Q 001482 71 IGVVSVCGRARQGKSFILNQLLGRSSGFQV----ASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (1070)
Q Consensus 71 v~vvsv~G~~r~GKS~lln~l~~~~~gF~~----~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~ 139 (1070)
+..|+|+|.+++|||+|+|.|.|.. +.+ +.|.++.+..+-+|. + ..++|+||.|+.
T Consensus 197 ~p~ValVG~~NaGKSSLlN~Lt~~~--~~v~~~~~tTld~~~~~i~l~~---------~--~~~~l~DTaG~~ 256 (426)
T PRK11058 197 VPTVSLVGYTNAGKSTLFNRITEAR--VYAADQLFATLDPTLRRIDVAD---------V--GETVLADTVGFI 256 (426)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCc--eeeccCCCCCcCCceEEEEeCC---------C--CeEEEEecCccc
Confidence 3468999999999999999999864 222 344555444333331 1 146789999973
No 179
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=96.51 E-value=0.72 Score=45.15 Aligned_cols=36 Identities=17% Similarity=0.210 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 001482 789 QERCKVAEKEAKKATELADRERAEAAAARKGKSEFE 824 (1070)
Q Consensus 789 ~e~l~~~e~e~~~~~e~~~~l~~e~~~a~~ek~~~q 824 (1070)
+..+..++.++..++..+..+..++..+.+++.++.
T Consensus 51 k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~ 86 (140)
T PF10473_consen 51 KAEIETLEEELEELTSELNQLELELDTLRSEKENLD 86 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444443
No 180
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=96.51 E-value=0.0092 Score=56.92 Aligned_cols=88 Identities=24% Similarity=0.391 Sum_probs=50.3
Q ss_pred EEeecCCCCChhHHHHHHhCCCCCcc---ccCCCCcccceEEeeccccccccCCCCceeEEEeecccccccCCCCcchhH
Q 001482 74 VSVCGRARQGKSFILNQLLGRSSGFQ---VASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYDQTGTYSTQ 150 (1070)
Q Consensus 74 vsv~G~~r~GKS~lln~l~~~~~gF~---~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~~~~~~~~~d~~ 150 (1070)
|.|+|+.++|||+|++.|++.. |. ......+.+.++..... .+....+.+.|+.|..... ....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~d~~g~~~~~----~~~~ 68 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE--FPDNSVPEETSEITIGVDVIVV-------DGDRQSLQFWDFGGQEEFY----SQHQ 68 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS----------SSTTSCEEEEEEEE-------TTEEEEEEEEEESSSHCHH----CTSH
T ss_pred EEEECcCCCCHHHHHHHHhcCC--CcccccccccCCCcEEEEEEEe-------cCCceEEEEEecCccceec----cccc
Confidence 6799999999999999999876 33 23333444555443322 2333457889999953211 1122
Q ss_pred HHHHHHhhhhheeecCCCCCCHHHhhhh
Q 001482 151 IFSLAVLLSSMFIYNQMGGIDESAIDRL 178 (1070)
Q Consensus 151 ifaL~~llSS~~IyN~~~~i~~~~l~~L 178 (1070)
.| +.-.-.-+++|.+. +..+++++
T Consensus 69 ~~-~~~~d~~ilv~D~s---~~~s~~~~ 92 (119)
T PF08477_consen 69 FF-LKKADAVILVYDLS---DPESLEYL 92 (119)
T ss_dssp HH-HHHSCEEEEEEECC---GHHHHHHH
T ss_pred ch-hhcCcEEEEEEcCC---ChHHHHHH
Confidence 22 44433456677654 34556664
No 181
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=96.46 E-value=0.0031 Score=66.00 Aligned_cols=55 Identities=29% Similarity=0.332 Sum_probs=36.3
Q ss_pred EEEeecCCCCChhHHHHHHhCCCC-------CccccCCCCcccceEEeeccccccccCCCCceeEEEeecccc
Q 001482 73 VVSVCGRARQGKSFILNQLLGRSS-------GFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI 138 (1070)
Q Consensus 73 vvsv~G~~r~GKS~lln~l~~~~~-------gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~ 138 (1070)
.|.++|.+++|||+|+|.|++... +..+++. ..+|.+.+...- +. .+.|+||||+
T Consensus 129 ~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~-~gtT~~~~~~~~--------~~--~~~~~DtPG~ 190 (190)
T cd01855 129 DVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPI-PGTTLDLIKIPL--------GN--GKKLYDTPGI 190 (190)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCC-CCeeeeeEEEec--------CC--CCEEEeCcCC
Confidence 578999999999999999998542 2233322 235666543211 11 3678999995
No 182
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=96.44 E-value=0.0043 Score=63.04 Aligned_cols=59 Identities=19% Similarity=0.324 Sum_probs=38.7
Q ss_pred EEEEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeecccc
Q 001482 72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI 138 (1070)
Q Consensus 72 ~vvsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~ 138 (1070)
.=|.|+|+.++|||+|+++|.+.. |.- ....|.|+-.-...+. .+|..+.+.|+||+|.
T Consensus 4 ~kv~vvG~~~~GKTsli~~l~~~~--~~~---~~~~t~~~~~~~~~~~---~~~~~~~l~i~D~~G~ 62 (165)
T cd01864 4 FKIILIGDSNVGKTCVVQRFKSGT--FSE---RQGNTIGVDFTMKTLE---IEGKRVKLQIWDTAGQ 62 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhhCC--Ccc---cCCCccceEEEEEEEE---ECCEEEEEEEEECCCh
Confidence 347899999999999999998754 522 2234555432211111 2355578899999994
No 183
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=96.41 E-value=0.0047 Score=62.66 Aligned_cols=58 Identities=22% Similarity=0.393 Sum_probs=40.3
Q ss_pred EEEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeecccc
Q 001482 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI 138 (1070)
Q Consensus 73 vvsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~ 138 (1070)
=|.|+|+.++|||+|+|+|++.. |.... ..|.|+-++...+. .+|..+.+-++||+|.
T Consensus 5 ki~vvG~~~~GKSsli~~l~~~~--~~~~~---~~t~~~~~~~~~~~---~~~~~~~~~l~D~~g~ 62 (165)
T cd01868 5 KIVLIGDSGVGKSNLLSRFTRNE--FNLDS---KSTIGVEFATRSIQ---IDGKTIKAQIWDTAGQ 62 (165)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CCCCC---CCccceEEEEEEEE---ECCEEEEEEEEeCCCh
Confidence 37899999999999999999876 64322 23555543333332 2355577889999995
No 184
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=96.38 E-value=0.0052 Score=62.24 Aligned_cols=58 Identities=21% Similarity=0.200 Sum_probs=40.7
Q ss_pred EEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeeccccc
Q 001482 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (1070)
Q Consensus 74 vsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~ 139 (1070)
|.|+|+.++|||+|+|.|++.. |.. ....|.|+-.....+. .+|..+.+-|+||+|..
T Consensus 3 i~~vG~~~vGKTsli~~l~~~~--~~~---~~~~t~~~~~~~~~~~---~~~~~~~l~i~Dt~G~~ 60 (168)
T cd04119 3 VISMGNSGVGKSCIIKRYCEGR--FVS---KYLPTIGIDYGVKKVS---VRNKEVRVNFFDLSGHP 60 (168)
T ss_pred EEEECCCCCCHHHHHHHHHhCC--CCC---CCCCccceeEEEEEEE---ECCeEEEEEEEECCccH
Confidence 7899999999999999999876 532 2234556543333222 23566889999999953
No 185
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=96.35 E-value=0.0039 Score=71.02 Aligned_cols=96 Identities=22% Similarity=0.243 Sum_probs=49.3
Q ss_pred CCEEEEEeecCCCCChhHHHHHHhCCC---CCccccCCCCcccceEEeeccccccccCCCCceeEEEeecccccccCCCC
Q 001482 69 EPIGVVSVCGRARQGKSFILNQLLGRS---SGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYDQTG 145 (1070)
Q Consensus 69 ~~v~vvsv~G~~r~GKS~lln~l~~~~---~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~~~~~~~ 145 (1070)
.|+ =|+|+|..|+|||+|.|.|.|-. .|-.- -|+-.+|...--|..|. -.+|+|.|.||+|...-.
T Consensus 34 ~~l-~IaV~G~sGsGKSSfINalrGl~~~d~~aA~-tGv~etT~~~~~Y~~p~--------~pnv~lWDlPG~gt~~f~- 102 (376)
T PF05049_consen 34 APL-NIAVTGESGSGKSSFINALRGLGHEDEGAAP-TGVVETTMEPTPYPHPK--------FPNVTLWDLPGIGTPNFP- 102 (376)
T ss_dssp --E-EEEEEESTTSSHHHHHHHHTT--TTSTTS---SSSHSCCTS-EEEE-SS---------TTEEEEEE--GGGSS---
T ss_pred Cce-EEEEECCCCCCHHHHHHHHhCCCCCCcCcCC-CCCCcCCCCCeeCCCCC--------CCCCeEEeCCCCCCCCCC-
Confidence 455 48999999999999999998743 22211 12234566666555443 125788899999864321
Q ss_pred cchhHHHHHHHhh--hhheeecCCCCCCHHHhhhh
Q 001482 146 TYSTQIFSLAVLL--SSMFIYNQMGGIDESAIDRL 178 (1070)
Q Consensus 146 ~~d~~ifaL~~ll--SS~~IyN~~~~i~~~~l~~L 178 (1070)
..=|.=.+-+ -.+||.=+.+.+.+.++...
T Consensus 103 ---~~~Yl~~~~~~~yD~fiii~s~rf~~ndv~La 134 (376)
T PF05049_consen 103 ---PEEYLKEVKFYRYDFFIIISSERFTENDVQLA 134 (376)
T ss_dssp ---HHHHHHHTTGGG-SEEEEEESSS--HHHHHHH
T ss_pred ---HHHHHHHccccccCEEEEEeCCCCchhhHHHH
Confidence 1111111112 23456556677877776533
No 186
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=96.34 E-value=0.0053 Score=61.98 Aligned_cols=58 Identities=22% Similarity=0.401 Sum_probs=39.4
Q ss_pred EEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeeccccc
Q 001482 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (1070)
Q Consensus 74 vsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~ 139 (1070)
|.|+|+.++|||+|+|+|++.. |... .+.|.|+-.-..++. .+|..+.+.|+||+|..
T Consensus 3 i~v~G~~~vGKTsli~~l~~~~--~~~~---~~~~~~~~~~~~~~~---~~~~~~~l~l~D~~G~~ 60 (161)
T cd04113 3 FIIIGSSGTGKSCLLHRFVENK--FKED---SQHTIGVEFGSKIIR---VGGKRVKLQIWDTAGQE 60 (161)
T ss_pred EEEECCCCCCHHHHHHHHHhCC--CCCC---CCCceeeeEEEEEEE---ECCEEEEEEEEECcchH
Confidence 6899999999999999999775 5332 234555433222221 23556788999999953
No 187
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=96.34 E-value=1.7 Score=45.42 Aligned_cols=19 Identities=42% Similarity=0.742 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001482 868 KVALLEARVEEREKEIESL 886 (1070)
Q Consensus 868 ~~~~le~~v~ele~eie~L 886 (1070)
++..+..++...+..+..|
T Consensus 126 kL~~~~~~l~~~~~ki~~L 144 (194)
T PF15619_consen 126 KLSQLEQKLQEKEKKIQEL 144 (194)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444
No 188
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=96.34 E-value=0.005 Score=68.62 Aligned_cols=66 Identities=26% Similarity=0.404 Sum_probs=43.3
Q ss_pred EEEeecCCCCChhHHHHHHhCCC--CCc---cccCCCCcccceEEeeccccccccCCCCceeEEEeeccccccc
Q 001482 73 VVSVCGRARQGKSFILNQLLGRS--SGF---QVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAY 141 (1070)
Q Consensus 73 vvsv~G~~r~GKS~lln~l~~~~--~gF---~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~~~ 141 (1070)
-|=|||+.|+|||+++|.|++++ +++ ...+.....|.-|-....-+ ..+|..+.+-++||||||+.
T Consensus 25 ~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l---~e~~~~~~l~vIDtpGfGD~ 95 (373)
T COG5019 25 TIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAEL---EEDGFHLNLTVIDTPGFGDF 95 (373)
T ss_pred EEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeee---ecCCeEEEEEEeccCCcccc
Confidence 46689999999999999999973 222 12221112233343333222 24688899999999999853
No 189
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=96.33 E-value=0.011 Score=61.04 Aligned_cols=22 Identities=27% Similarity=0.487 Sum_probs=20.3
Q ss_pred EEeecCCCCChhHHHHHHhCCC
Q 001482 74 VSVCGRARQGKSFILNQLLGRS 95 (1070)
Q Consensus 74 vsv~G~~r~GKS~lln~l~~~~ 95 (1070)
|+|+|..++|||+|+|.|++..
T Consensus 2 v~v~G~~~~GKStlln~l~~~~ 23 (189)
T cd00881 2 VGIAGHVDHGKTTLTERLLYVT 23 (189)
T ss_pred EEEEeCCCCCHHHHHHHHHHhc
Confidence 7899999999999999999765
No 190
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=96.31 E-value=0.016 Score=58.70 Aligned_cols=60 Identities=30% Similarity=0.442 Sum_probs=35.9
Q ss_pred EEEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeeccccccc
Q 001482 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAY 141 (1070)
Q Consensus 73 vvsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~~~ 141 (1070)
.|.++|..++|||+|+|.|++.. +........+|..... ..+ ..+| ..+.++||+|++..
T Consensus 4 ~i~i~G~~~~GKstli~~l~~~~--~~~~~~~~~~~~~~~~--~~~---~~~~--~~~~iiDtpG~~~~ 63 (174)
T cd01895 4 RIAIIGRPNVGKSSLVNALLGEE--RVIVSDIAGTTRDSID--VPF---EYDG--KKYTLIDTAGIRRK 63 (174)
T ss_pred EEEEEcCCCCCHHHHHHHHhCcc--ceeccCCCCCccCcee--eEE---EECC--eeEEEEECCCCccc
Confidence 48899999999999999999865 2111111122222211 111 1123 34778999998744
No 191
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.31 E-value=0.0058 Score=64.99 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=21.6
Q ss_pred EEEeecCCCCChhHHHHHHhCCC
Q 001482 73 VVSVCGRARQGKSFILNQLLGRS 95 (1070)
Q Consensus 73 vvsv~G~~r~GKS~lln~l~~~~ 95 (1070)
+|||+||.|+|||||||.+.|-.
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 89999999999999999999865
No 192
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=96.29 E-value=0.006 Score=62.29 Aligned_cols=60 Identities=25% Similarity=0.340 Sum_probs=39.7
Q ss_pred EEEEEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeecccc
Q 001482 71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI 138 (1070)
Q Consensus 71 v~vvsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~ 138 (1070)
+.=|.|+|+.++|||+|+|.+.+.. |.... +.|.|+-.+...+. .+|..+.+.++||+|.
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~--~~~~~---~~t~~~~~~~~~~~---~~~~~~~~~i~Dt~G~ 63 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKR--FQPVH---DLTIGVEFGARMIT---IDGKQIKLQIWDTAGQ 63 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC--CCCCC---CCccceeEEEEEEE---ECCEEEEEEEEECCCc
Confidence 4558999999999999999999865 53332 22444322211111 2355678899999994
No 193
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=96.28 E-value=2.5 Score=46.77 Aligned_cols=99 Identities=24% Similarity=0.295 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001482 785 FEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELE 864 (1070)
Q Consensus 785 ~ee~~e~l~~~e~e~~~~~e~~~~l~~e~~~a~~ek~~~q~~~~e~~~~ie~l~~~i~~Le~e~~~l~~el~~l~~~~~~ 864 (1070)
++.++.+++.++.+-..++.+...+..+....+.. -+.+..+--.++..+..++..|..++..-..+..+.+.+...
T Consensus 162 le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~Eek---EqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~ 238 (306)
T PF04849_consen 162 LEALQEKLKSLEEENEQLRSEASQLKTETDTYEEK---EQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITS 238 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHH---HHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666555544322221 122233334567777777777777777777776666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001482 865 ALSKVALLEARVEEREKEIESL 886 (1070)
Q Consensus 865 ~~~~~~~le~~v~ele~eie~L 886 (1070)
+.+.+..+..+++.+-.+-+.+
T Consensus 239 LlsqivdlQ~r~k~~~~EnEeL 260 (306)
T PF04849_consen 239 LLSQIVDLQQRCKQLAAENEEL 260 (306)
T ss_pred HHHHHHHHHHHHHHHhhhHHHH
Confidence 6666666666666655555555
No 194
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=96.24 E-value=5.3 Score=50.21 Aligned_cols=27 Identities=22% Similarity=0.209 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001482 614 QVCSEIEVLKSRSTAAEARLAAAREQA 640 (1070)
Q Consensus 614 ~l~~Ei~~Lk~~l~~le~~l~~l~~e~ 640 (1070)
+.+.|+..|+.+++.+..+-..++..+
T Consensus 21 kae~e~~~lk~~l~~~~~~~~~~e~r~ 47 (769)
T PF05911_consen 21 KAEAEAASLKQQLEAATQQKLALEDRV 47 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHh
Confidence 355555556665555544443333333
No 195
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=96.24 E-value=0.0067 Score=61.31 Aligned_cols=59 Identities=24% Similarity=0.275 Sum_probs=37.9
Q ss_pred EEEEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeeccccc
Q 001482 72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (1070)
Q Consensus 72 ~vvsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~ 139 (1070)
.=|.|+|+.++|||+|+|.+++.. |.. ...+.+...+..... .+|..+.+.++||+|..
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~--~~~--~~~~t~~~~~~~~~~-----~~~~~~~~~i~Dt~G~~ 61 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSY--FVT--DYDPTIEDSYTKQCE-----IDGQWAILDILDTAGQE 61 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCC--CCc--ccCCCccceEEEEEE-----ECCEEEEEEEEECCCCc
Confidence 347899999999999999999764 421 122322222222211 23555778899999954
No 196
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=96.23 E-value=0.0086 Score=66.96 Aligned_cols=59 Identities=27% Similarity=0.421 Sum_probs=36.9
Q ss_pred EEEEeecCCCCChhHHHHHHhCCCCCccccC-----CC-CcccceEEeeccccccccCCCCceeEEEeeccccccc
Q 001482 72 GVVSVCGRARQGKSFILNQLLGRSSGFQVAS-----TH-RPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAY 141 (1070)
Q Consensus 72 ~vvsv~G~~r~GKS~lln~l~~~~~gF~~~~-----~~-~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~~~ 141 (1070)
.+++++|+.++|||+|+|.|+|... +.+|. +. ...|....++..| ++ .+|+||||+..+
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~-~~~g~v~~~~~~g~~tT~~~~~~~~~------~~----~~liDtPG~~~~ 226 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLD-LATGEISEKLGRGRHTTTHRELFPLP------GG----GLLIDTPGFREF 226 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhh-ccccceeccCCCCCcccceEEEEEcC------CC----CEEEECCCCCcc
Confidence 4789999999999999999998631 11111 11 1234444443322 11 268999998643
No 197
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=96.22 E-value=0.0073 Score=65.41 Aligned_cols=55 Identities=33% Similarity=0.471 Sum_probs=37.4
Q ss_pred EEEeecCCCCChhHHHHHHhCCCCCccccC---CCCcccceEEeeccccccccCCCCceeEEEeecccccc
Q 001482 73 VVSVCGRARQGKSFILNQLLGRSSGFQVAS---THRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (1070)
Q Consensus 73 vvsv~G~~r~GKS~lln~l~~~~~gF~~~~---~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~~ 140 (1070)
-|+|+|++++|||+|+|.|.|.. ..++. +...++.|.+.|. | ..+-++||+|+..
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~--~~v~~~~~tT~~~~~g~~~~~---------~--~~i~l~DtpG~~~ 59 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTK--SEVAAYEFTTLTCVPGVLEYK---------G--AKIQLLDLPGIIE 59 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC--ccccCCCCccccceEEEEEEC---------C--eEEEEEECCCccc
Confidence 47899999999999999999875 22221 1122345655441 2 4677899999753
No 198
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=96.22 E-value=0.0068 Score=60.39 Aligned_cols=57 Identities=23% Similarity=0.352 Sum_probs=37.5
Q ss_pred EEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeecccc
Q 001482 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI 138 (1070)
Q Consensus 74 vsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~ 138 (1070)
|.++|++++|||+|+|.|++.. |... ...|.|+-.....+.. ++..+.+.++|++|.
T Consensus 3 i~~~G~~~~GKStl~~~l~~~~--~~~~---~~~t~~~~~~~~~~~~---~~~~~~~~l~D~~g~ 59 (159)
T cd00154 3 IVLIGDSGVGKTSLLLRFVDGK--FDEN---YKSTIGVDFKSKTIEI---DGKTVKLQIWDTAGQ 59 (159)
T ss_pred EEEECCCCCCHHHHHHHHHhCc--CCCc---cCCceeeeeEEEEEEE---CCEEEEEEEEecCCh
Confidence 7889999999999999999776 4322 1234444322221111 244578899999995
No 199
>PRK00098 GTPase RsgA; Reviewed
Probab=96.21 E-value=0.0055 Score=68.90 Aligned_cols=23 Identities=35% Similarity=0.442 Sum_probs=20.8
Q ss_pred EEEeecCCCCChhHHHHHHhCCC
Q 001482 73 VVSVCGRARQGKSFILNQLLGRS 95 (1070)
Q Consensus 73 vvsv~G~~r~GKS~lln~l~~~~ 95 (1070)
++.++|+.++|||+|+|.|+|..
T Consensus 166 ~~~~~G~sgvGKStlin~l~~~~ 188 (298)
T PRK00098 166 VTVLAGQSGVGKSTLLNALAPDL 188 (298)
T ss_pred eEEEECCCCCCHHHHHHHHhCCc
Confidence 57799999999999999999864
No 200
>COG1160 Predicted GTPases [General function prediction only]
Probab=96.20 E-value=0.014 Score=66.98 Aligned_cols=92 Identities=25% Similarity=0.416 Sum_probs=54.6
Q ss_pred EEEEeecCCCCChhHHHHHHhCCCCC----ccccCCCCc-ccceEEeeccccccccCCCCceeEEEeecccccccCCC-C
Q 001482 72 GVVSVCGRARQGKSFILNQLLGRSSG----FQVASTHRP-CTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYDQT-G 145 (1070)
Q Consensus 72 ~vvsv~G~~r~GKS~lln~l~~~~~g----F~~~~~~~~-~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~~~~~~-~ 145 (1070)
.+|+|+|.+..|||||.|+|.|+... |+ |-|+++ ...|-|. | ..+.++||.|++..+.+ .
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~p-GvTRDr~y~~~~~~-----------~--~~f~lIDTgGl~~~~~~~l 69 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTP-GVTRDRIYGDAEWL-----------G--REFILIDTGGLDDGDEDEL 69 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCC-CCccCCccceeEEc-----------C--ceEEEEECCCCCcCCchHH
Confidence 47999999999999999999998521 11 122222 2334442 2 34788999999854422 1
Q ss_pred cc---hhHHHHHHHhhhhheeecCCCCCCHHHhhh
Q 001482 146 TY---STQIFSLAVLLSSMFIYNQMGGIDESAIDR 177 (1070)
Q Consensus 146 ~~---d~~ifaL~~llSS~~IyN~~~~i~~~~l~~ 177 (1070)
.. .....|+.--=.-+||.+....|+..|-.-
T Consensus 70 ~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~i 104 (444)
T COG1160 70 QELIREQALIAIEEADVILFVVDGREGITPADEEI 104 (444)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHH
Confidence 11 233444444222344555555677777553
No 201
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=96.20 E-value=0.0072 Score=61.81 Aligned_cols=52 Identities=25% Similarity=0.229 Sum_probs=33.5
Q ss_pred eecCCCCChhHHHHHHhCCCCCccccCC---CCcccceEEeeccccccccCCCCceeEEEeeccccc
Q 001482 76 VCGRARQGKSFILNQLLGRSSGFQVAST---HRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (1070)
Q Consensus 76 v~G~~r~GKS~lln~l~~~~~gF~~~~~---~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~ 139 (1070)
|+|+.++|||+|+|.|.|.. +.+++. ...++.|...|. + ...+.|+||+|+.
T Consensus 1 iiG~~~~GKStll~~l~~~~--~~~~~~~~~t~~~~~~~~~~~--------~--~~~~~i~DtpG~~ 55 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAK--PKVANYPFTTLEPNLGVVEVP--------D--GARIQVADIPGLI 55 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCC--ccccCCCceeecCcceEEEcC--------C--CCeEEEEeccccc
Confidence 68999999999999999875 222221 112233332221 1 2468899999974
No 202
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=96.19 E-value=0.0072 Score=61.51 Aligned_cols=58 Identities=24% Similarity=0.416 Sum_probs=39.9
Q ss_pred EEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeeccccc
Q 001482 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (1070)
Q Consensus 74 vsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~ 139 (1070)
|.|+|+.++|||+|+|.|.+.. |.- ..+.|.|.-+....+. .+|..+.+.++||+|..
T Consensus 5 i~iiG~~~vGKTsli~~~~~~~--~~~---~~~~t~~~~~~~~~~~---~~~~~~~l~i~Dt~G~~ 62 (166)
T cd04122 5 YIIIGDMGVGKSCLLHQFTEKK--FMA---DCPHTIGVEFGTRIIE---VNGQKIKLQIWDTAGQE 62 (166)
T ss_pred EEEECCCCCCHHHHHHHHhcCC--CCC---CCCcccceeEEEEEEE---ECCEEEEEEEEECCCcH
Confidence 6789999999999999999765 632 2234555443332221 24566889999999953
No 203
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=96.19 E-value=2.1 Score=45.07 Aligned_cols=20 Identities=30% Similarity=0.441 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001482 641 LSAQEEVEEWKRKYGVAVRE 660 (1070)
Q Consensus 641 q~lq~el~e~k~~le~e~~e 660 (1070)
..++.+.+++.+.+...+.+
T Consensus 117 ~kle~ErdeL~~kf~~~i~e 136 (201)
T PF13851_consen 117 EKLEQERDELYRKFESAIQE 136 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444
No 204
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=96.19 E-value=0.0065 Score=61.28 Aligned_cols=57 Identities=28% Similarity=0.392 Sum_probs=39.0
Q ss_pred EEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeeccccc
Q 001482 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (1070)
Q Consensus 74 vsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~ 139 (1070)
|+++|+.++|||+|+|.|++.. |. +...+.+...+.+.. ..+|..+.+.++||+|..
T Consensus 3 i~~~G~~~~GKTsl~~~l~~~~--~~--~~~~~~~~~~~~~~~-----~~~~~~~~~~i~D~~g~~ 59 (164)
T cd04139 3 VIVVGAGGVGKSALTLQFMYDE--FV--EDYEPTKADSYRKKV-----VLDGEDVQLNILDTAGQE 59 (164)
T ss_pred EEEECCCCCCHHHHHHHHHhCC--Cc--cccCCcchhhEEEEE-----EECCEEEEEEEEECCChh
Confidence 7899999999999999999765 32 122333333333322 234566889999999954
No 205
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=96.18 E-value=0.015 Score=66.94 Aligned_cols=56 Identities=32% Similarity=0.437 Sum_probs=39.2
Q ss_pred CEEEEEeecCCCCChhHHHHHHhCCCCCccc----cCCCCcccceEEeeccccccccCCCCceeEEEeecccc
Q 001482 70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQV----ASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI 138 (1070)
Q Consensus 70 ~v~vvsv~G~~r~GKS~lln~l~~~~~gF~~----~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~ 138 (1070)
.+..|+|+|.+++|||+|+|.|.|.. +-+ +.|..+.+.-+. + ++| ..+.|+||.|+
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~--~~v~~~~~tT~d~~~~~i~-~--------~~~--~~i~l~DT~G~ 247 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGAD--VYAADQLFATLDPTTRRLD-L--------PDG--GEVLLTDTVGF 247 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCc--eeeccCCccccCCEEEEEE-e--------CCC--ceEEEEecCcc
Confidence 56789999999999999999999875 221 234444333322 1 233 46889999997
No 206
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=96.17 E-value=0.007 Score=60.38 Aligned_cols=53 Identities=23% Similarity=0.365 Sum_probs=37.3
Q ss_pred EEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeecccc
Q 001482 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI 138 (1070)
Q Consensus 74 vsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~ 138 (1070)
|+|+|+.++|||+|+|.|.+.. |... ...|.|+-..... .| .+.+.++||+|.
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~--~~~~---~~~t~~~~~~~~~------~~-~~~~~~~D~~g~ 54 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQ--FSED---TIPTVGFNMRKVT------KG-NVTLKVWDLGGQ 54 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCC--CCcC---ccCCCCcceEEEE------EC-CEEEEEEECCCC
Confidence 7899999999999999999875 5321 2345565443211 12 267899999995
No 207
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=96.17 E-value=0.79 Score=44.82 Aligned_cols=76 Identities=21% Similarity=0.222 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001482 741 LETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAA 816 (1070)
Q Consensus 741 ~ei~~l~~~le~~~~~i~~le~~l~~le~e~~~le~~l~~~~~~~ee~~e~l~~~e~e~~~~~e~~~~l~~e~~~a 816 (1070)
.++..+..........+..+...+..........+..|+.+.....+....+..+..++..+...+..++..+..+
T Consensus 10 ~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a 85 (132)
T PF07926_consen 10 SELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAESA 85 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333343344444444444444444444444445555444444444444444444333
No 208
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=96.17 E-value=0.0074 Score=61.37 Aligned_cols=58 Identities=19% Similarity=0.238 Sum_probs=40.6
Q ss_pred EEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeeccccc
Q 001482 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (1070)
Q Consensus 74 vsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~ 139 (1070)
|.|+|+.++|||+|+|.|.+.. |.- .-..|.|+-.+..-+ .++|..+.+.++||+|..
T Consensus 4 i~i~G~~~~GKSsli~~l~~~~--~~~---~~~~t~~~~~~~~~~---~~~~~~~~~~l~Dt~g~~ 61 (165)
T cd01865 4 LLIIGNSSVGKTSFLFRYADDS--FTS---AFVSTVGIDFKVKTV---FRNDKRVKLQIWDTAGQE 61 (165)
T ss_pred EEEECCCCCCHHHHHHHHhcCC--CCC---CCCCceeeEEEEEEE---EECCEEEEEEEEECCChH
Confidence 7899999999999999999876 632 123366654433222 134556889999999953
No 209
>COG1161 Predicted GTPases [General function prediction only]
Probab=96.16 E-value=0.0057 Score=69.38 Aligned_cols=58 Identities=33% Similarity=0.485 Sum_probs=41.0
Q ss_pred EEEEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceE-EeeccccccccCCCCceeEEEeecccccccC
Q 001482 72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGL-WLWSAPLKRTALDGTEYNLLLLDSEGIDAYD 142 (1070)
Q Consensus 72 ~vvsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~gi-w~~~~p~~~~~~~g~~~~~~llDteG~~~~~ 142 (1070)
.-|.|+|-+.+|||+|+|.|+|... -.+++.. ..|+|+ |+-.. ..+.|+||||+--.+
T Consensus 133 ~~v~vvG~PNVGKSslIN~L~~k~~-~~~s~~P-G~Tk~~q~i~~~-----------~~i~LlDtPGii~~~ 191 (322)
T COG1161 133 IRVGVVGYPNVGKSTLINRLLGKKV-AKTSNRP-GTTKGIQWIKLD-----------DGIYLLDTPGIIPPK 191 (322)
T ss_pred eEEEEEcCCCCcHHHHHHHHhcccc-eeeCCCC-ceecceEEEEcC-----------CCeEEecCCCcCCCC
Confidence 4499999999999999999999864 2333322 356666 54321 238899999986443
No 210
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=96.16 E-value=0.0073 Score=63.18 Aligned_cols=59 Identities=19% Similarity=0.276 Sum_probs=41.9
Q ss_pred EEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeeccccc
Q 001482 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (1070)
Q Consensus 74 vsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~ 139 (1070)
|.|+|+.++|||+|+|.|++.. |..++. ..|.|.-++...+. .+|..+.+-++||+|..
T Consensus 3 i~vvG~~~vGKSsLi~~~~~~~--~~~~~~--~~t~~~~~~~~~~~---~~~~~~~l~i~D~~G~~ 61 (193)
T cd04118 3 VVMLGKESVGKTSLVERYVHHR--FLVGPY--QNTIGAAFVAKRMV---VGERVVTLGIWDTAGSE 61 (193)
T ss_pred EEEECCCCCCHHHHHHHHHhCC--cCCcCc--ccceeeEEEEEEEE---ECCEEEEEEEEECCCch
Confidence 7899999999999999999865 754332 34556544443332 24666778889999964
No 211
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=96.15 E-value=0.0081 Score=60.69 Aligned_cols=55 Identities=22% Similarity=0.334 Sum_probs=37.6
Q ss_pred EEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceE--EeeccccccccCCCCceeEEEeecccc
Q 001482 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGL--WLWSAPLKRTALDGTEYNLLLLDSEGI 138 (1070)
Q Consensus 74 vsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~gi--w~~~~p~~~~~~~g~~~~~~llDteG~ 138 (1070)
|.|+|+.++|||+|+|.|++.. |.. ....|.|. +.+..++ ++..+.+.++||+|.
T Consensus 4 i~v~G~~~~GKSsli~~l~~~~--~~~---~~~~t~~~~~~~~~v~~-----~~~~~~~~i~D~~G~ 60 (163)
T cd01860 4 LVLLGDSSVGKSSLVLRFVKNE--FSE---NQESTIGAAFLTQTVNL-----DDTTVKFEIWDTAGQ 60 (163)
T ss_pred EEEECCCCCCHHHHHHHHHcCC--CCC---CCCCccceeEEEEEEEE-----CCEEEEEEEEeCCch
Confidence 7899999999999999999876 532 11234442 2222222 345678889999994
No 212
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=96.12 E-value=0.01 Score=60.67 Aligned_cols=61 Identities=21% Similarity=0.336 Sum_probs=42.2
Q ss_pred EEEEEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeeccccc
Q 001482 71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (1070)
Q Consensus 71 v~vvsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~ 139 (1070)
+.-|.|+|+.++|||+|++++++.. |.-. ...|.|+.....++. .+|..+.+-++||+|..
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~--~~~~---~~~t~~~~~~~~~~~---~~~~~~~~~i~Dt~G~~ 62 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGR--FPER---TEATIGVDFRERTVE---IDGERIKVQLWDTAGQE 62 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC--CCCc---cccceeEEEEEEEEE---ECCeEEEEEEEeCCChH
Confidence 3458999999999999999999755 5322 234666544333332 23566889999999954
No 213
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=96.10 E-value=0.0045 Score=60.63 Aligned_cols=57 Identities=28% Similarity=0.424 Sum_probs=38.3
Q ss_pred eecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeecccccc
Q 001482 76 VCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (1070)
Q Consensus 76 v~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~~ 140 (1070)
|+|+.++|||+|+|.|.+.... +.....|. ++.+...+.. .+....+.++||+|...
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~----~~~~~~t~-~~~~~~~~~~---~~~~~~~~l~D~~g~~~ 57 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFV----PEEYETTI-IDFYSKTIEV---DGKKVKLQIWDTAGQER 57 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcC----Ccccccch-hheeeEEEEE---CCEEEEEEEEecCChHH
Confidence 6899999999999999987632 12222333 5555544422 13346799999999653
No 214
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=96.10 E-value=0.0089 Score=60.36 Aligned_cols=58 Identities=22% Similarity=0.377 Sum_probs=37.5
Q ss_pred EEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeeccccc
Q 001482 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (1070)
Q Consensus 74 vsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~ 139 (1070)
|.|+|+.++|||+|+|.|++.. |.... ..|.|+-....-+ ..+|..+.+.|+||+|..
T Consensus 3 v~v~G~~~~GKTtli~~l~~~~--~~~~~---~~~~~~~~~~~~~---~~~~~~~~~~l~D~~G~~ 60 (164)
T smart00175 3 IILIGDSGVGKSSLLSRFTDGK--FSEQY---KSTIGVDFKTKTI---EVDGKRVKLQIWDTAGQE 60 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCC--CCCCC---CCceeeEEEEEEE---EECCEEEEEEEEECCChH
Confidence 7899999999999999999876 53222 2233332111111 123556788899999953
No 215
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=96.09 E-value=0.0077 Score=63.04 Aligned_cols=58 Identities=22% Similarity=0.341 Sum_probs=38.7
Q ss_pred EEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeecccc
Q 001482 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI 138 (1070)
Q Consensus 74 vsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~ 138 (1070)
|.|+|+.++|||+|+|+|.+.. |..+. .+.|.|+-.-...+ ..+|..+.+.|+||+|.
T Consensus 3 i~vvG~~~vGKTSli~~~~~~~--~~~~~--~~~t~~~~~~~~~~---~~~~~~~~~~i~Dt~G~ 60 (191)
T cd04112 3 VMLLGDSGVGKTCLLVRFKDGA--FLNGN--FIATVGIDFRNKVV---TVDGVKVKLQIWDTAGQ 60 (191)
T ss_pred EEEECCCCCCHHHHHHHHhcCC--CCccC--cCCcccceeEEEEE---EECCEEEEEEEEeCCCc
Confidence 7889999999999999998776 64432 12344433222111 12456688999999994
No 216
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=96.08 E-value=0.0058 Score=66.65 Aligned_cols=22 Identities=27% Similarity=0.380 Sum_probs=20.4
Q ss_pred EEEeecCCCCChhHHHHHHhCC
Q 001482 73 VVSVCGRARQGKSFILNQLLGR 94 (1070)
Q Consensus 73 vvsv~G~~r~GKS~lln~l~~~ 94 (1070)
++.++|+.+.|||+|+|.|++.
T Consensus 122 ~~~~~G~sgvGKStLiN~L~~~ 143 (245)
T TIGR00157 122 ISVFAGQSGVGKSSLINALDPS 143 (245)
T ss_pred EEEEECCCCCCHHHHHHHHhhh
Confidence 6789999999999999999985
No 217
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=96.08 E-value=0.011 Score=59.68 Aligned_cols=60 Identities=22% Similarity=0.302 Sum_probs=40.4
Q ss_pred EEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeeccccc
Q 001482 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (1070)
Q Consensus 74 vsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~ 139 (1070)
|.|+|+.++|||+|+|.|.+.. |.- ....|.|...-...+.. ...+..+.+.++||+|..
T Consensus 3 v~~vG~~~~GKTsl~~~~~~~~--~~~---~~~~t~~~~~~~~~~~~-~~~~~~~~~~i~D~~G~~ 62 (162)
T cd04106 3 VIVVGNGNVGKSSMIQRFVKGI--FTK---DYKKTIGVDFLEKQIFL-RQSDEDVRLMLWDTAGQE 62 (162)
T ss_pred EEEECCCCCCHHHHHHHHhcCC--CCC---CCCCcEEEEEEEEEEEE-cCCCCEEEEEEeeCCchH
Confidence 7899999999999999999765 532 12346666543222222 112456789999999943
No 218
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=96.06 E-value=0.0097 Score=60.71 Aligned_cols=61 Identities=25% Similarity=0.339 Sum_probs=41.9
Q ss_pred EEEEEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeeccccc
Q 001482 71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (1070)
Q Consensus 71 v~vvsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~ 139 (1070)
..=|.|+|+.++|||+|++.+++.. |... ...|.|+-.+...+. .+|..+.+.++||+|..
T Consensus 5 ~~ki~vvG~~~~GKTsli~~~~~~~--~~~~---~~~~~~~~~~~~~~~---~~~~~~~l~i~D~~G~~ 65 (170)
T cd04116 5 LLKVILLGDGGVGKSSLMNRYVTNK--FDTQ---LFHTIGVEFLNKDLE---VDGHFVTLQIWDTAGQE 65 (170)
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCC--CCcC---cCCceeeEEEEEEEE---ECCeEEEEEEEeCCChH
Confidence 3457899999999999999999765 5332 123556543333332 24667888999999943
No 219
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=96.04 E-value=0.011 Score=63.31 Aligned_cols=58 Identities=21% Similarity=0.229 Sum_probs=41.6
Q ss_pred EEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeecccc
Q 001482 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI 138 (1070)
Q Consensus 74 vsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~ 138 (1070)
|.|+|+.++|||+|+|.|.+.. |.- ....|.|+-++...+.. +++..+.+.|+||+|.
T Consensus 3 i~ivG~~~vGKSsLi~~l~~~~--~~~---~~~~T~~~d~~~~~i~~--~~~~~~~~~i~Dt~G~ 60 (215)
T cd04109 3 IVVLGDGAVGKTSLCRRFAKEG--FGK---SYKQTIGLDFFSKRVTL--PGNLNVTLQVWDIGGQ 60 (215)
T ss_pred EEEECcCCCCHHHHHHHHhcCC--CCC---CCCCceeEEEEEEEEEe--CCCCEEEEEEEECCCc
Confidence 6899999999999999999765 632 22457776655443322 3345688999999994
No 220
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=96.04 E-value=0.014 Score=61.21 Aligned_cols=66 Identities=15% Similarity=0.287 Sum_probs=42.2
Q ss_pred EEEEEeecCCCCChhHHHHHHhCCCCCccccCCC---------CcccceEEeeccccccccCCCCceeEEEeeccccc
Q 001482 71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVASTH---------RPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (1070)
Q Consensus 71 v~vvsv~G~~r~GKS~lln~l~~~~~gF~~~~~~---------~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~ 139 (1070)
+.-|+|+|..++|||+|+|.|++....|....++ ...|.|+-++..... .++..+.+.|+||+|..
T Consensus 2 ~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~---~~~~~~~~~l~DtpG~~ 76 (194)
T cd01891 2 IRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTA---VTYKDTKINIVDTPGHA 76 (194)
T ss_pred ccEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeE---EEECCEEEEEEECCCcH
Confidence 3468999999999999999999755445432211 112345544333221 12345788999999965
No 221
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=96.01 E-value=3.3 Score=45.74 Aligned_cols=116 Identities=26% Similarity=0.382 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001482 735 EISSQKLETKELSEKLEAVNA-KAQSFEREARIMEQDKVYLEQKYKSEFER-FEEVQERCKVAEKEAKKATELADRERAE 812 (1070)
Q Consensus 735 e~~~l~~ei~~l~~~le~~~~-~i~~le~~l~~le~e~~~le~~l~~~~~~-~ee~~e~l~~~e~e~~~~~e~~~~l~~e 812 (1070)
.+..++.+-..|...++.-.. ....+.+++..+..+...++..+...... +..+...|..++.+... ....
T Consensus 85 kl~~l~keKe~L~~~~e~EEE~ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~-------~q~~ 157 (310)
T PF09755_consen 85 KLQQLKKEKETLALKYEQEEEFLTNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSA-------KQEE 157 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-------hHHH
Confidence 334444444444444443322 23455667777777777777766654433 35555555555444433 3344
Q ss_pred HHHHHhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001482 813 AAAARKGKSEFENLAM-ERMAVIERVQRQIESLERQKTDLTNEVNR 857 (1070)
Q Consensus 813 ~~~a~~ek~~~q~~~~-e~~~~ie~l~~~i~~Le~e~~~l~~el~~ 857 (1070)
++.+..++-.+.+.+. +...-+..+.+++..|..++..|+..+..
T Consensus 158 le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~~ 203 (310)
T PF09755_consen 158 LERLRREKVDLENTLEQEQEALVNRLWKQMDKLEAEKRRLQEKLEQ 203 (310)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 4455555655555433 23445788899999999999999887774
No 222
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=96.01 E-value=3.9 Score=46.61 Aligned_cols=10 Identities=10% Similarity=-0.130 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 001482 622 LKSRSTAAEA 631 (1070)
Q Consensus 622 Lk~~l~~le~ 631 (1070)
.+.-+.+++.
T Consensus 87 gr~~~~~~E~ 96 (325)
T PF08317_consen 87 GRQIFEEIEE 96 (325)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 223
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=96.01 E-value=0.0089 Score=60.92 Aligned_cols=58 Identities=26% Similarity=0.345 Sum_probs=39.5
Q ss_pred EEEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeecccc
Q 001482 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI 138 (1070)
Q Consensus 73 vvsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~ 138 (1070)
=|.|+|+.++|||+|+|++.+.. |.... ..|.|+-.....+. .+|..+.+.|.||+|.
T Consensus 5 ki~vvG~~~~GKSsl~~~~~~~~--f~~~~---~~t~~~~~~~~~~~---~~~~~~~l~l~D~~g~ 62 (167)
T cd01867 5 KLLLIGDSGVGKSCLLLRFSEDS--FNPSF---ISTIGIDFKIRTIE---LDGKKIKLQIWDTAGQ 62 (167)
T ss_pred EEEEECCCCCCHHHHHHHHhhCc--CCccc---ccCccceEEEEEEE---ECCEEEEEEEEeCCch
Confidence 37899999999999999999876 64321 23555533222221 2355678899999994
No 224
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=96.00 E-value=0.0087 Score=60.57 Aligned_cols=57 Identities=25% Similarity=0.345 Sum_probs=36.5
Q ss_pred EEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeeccccc
Q 001482 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (1070)
Q Consensus 74 vsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~ 139 (1070)
|+|+|+.++|||+|+|.|.+.. |.... .+++...+- .++ ..+|..+.+-++||+|..
T Consensus 3 i~v~G~~~~GKTsli~~~~~~~--~~~~~--~~t~~~~~~--~~~---~~~~~~~~l~i~Dt~g~~ 59 (164)
T smart00173 3 LVVLGSGGVGKSALTIQFVQGH--FVDDY--DPTIEDSYR--KQI---EIDGEVCLLDILDTAGQE 59 (164)
T ss_pred EEEECCCCCCHHHHHHHHHhCc--CCccc--CCchhhhEE--EEE---EECCEEEEEEEEECCCcc
Confidence 7899999999999999999765 53221 122221111 111 123556788899999954
No 225
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=95.98 E-value=3.3 Score=46.28 Aligned_cols=16 Identities=25% Similarity=0.472 Sum_probs=8.0
Q ss_pred HhhHHHHHHHHHHHHH
Q 001482 520 YRSIEDNMKLLKKQLE 535 (1070)
Q Consensus 520 l~~~~~~l~~L~k~le 535 (1070)
|+++.+.+-.+..+++
T Consensus 4 L~SK~eAL~IL~~eLe 19 (319)
T PF09789_consen 4 LQSKSEALLILSQELE 19 (319)
T ss_pred hhhHHHHHHHHHHHHH
Confidence 4444555555555553
No 226
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=95.94 E-value=0.0098 Score=60.02 Aligned_cols=58 Identities=26% Similarity=0.355 Sum_probs=37.8
Q ss_pred EEEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeeccccc
Q 001482 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (1070)
Q Consensus 73 vvsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~ 139 (1070)
-|.|+|+.++|||+|+|++++.. |.. ...|++...+.. .+ ..+|..+.+-++||+|..
T Consensus 3 ki~i~G~~~vGKTsl~~~~~~~~--~~~--~~~~t~~~~~~~--~~---~~~~~~~~l~i~Dt~G~~ 60 (163)
T cd04136 3 KVVVLGSGGVGKSALTVQFVQGI--FVE--KYDPTIEDSYRK--QI---EVDGQQCMLEILDTAGTE 60 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC--CCc--ccCCchhhhEEE--EE---EECCEEEEEEEEECCCcc
Confidence 37899999999999999999765 532 122333222222 12 124556778889999954
No 227
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=95.94 E-value=0.011 Score=60.06 Aligned_cols=57 Identities=23% Similarity=0.343 Sum_probs=38.2
Q ss_pred EEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeecccc
Q 001482 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI 138 (1070)
Q Consensus 74 vsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~ 138 (1070)
|.|+|+.++|||+|+|+|++.. |.... ..|.|+-.....+. .+|..+.+-++||+|.
T Consensus 5 i~i~G~~~vGKSsli~~~~~~~--~~~~~---~~t~~~~~~~~~~~---~~~~~~~~~i~D~~G~ 61 (166)
T cd01869 5 LLLIGDSGVGKSCLLLRFADDT--YTESY---ISTIGVDFKIRTIE---LDGKTIKLQIWDTAGQ 61 (166)
T ss_pred EEEECCCCCCHHHHHHHHhcCC--CCCCC---CCccceeEEEEEEE---ECCEEEEEEEEECCCc
Confidence 7899999999999999999765 64321 23444322222221 1355678889999994
No 228
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.93 E-value=0.011 Score=66.55 Aligned_cols=65 Identities=23% Similarity=0.242 Sum_probs=42.7
Q ss_pred EEEeecCCCCChhHHHHHHhCCC----CCccccCCCCcccceEEeeccccccccCCCCceeEEEeecccccc
Q 001482 73 VVSVCGRARQGKSFILNQLLGRS----SGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (1070)
Q Consensus 73 vvsv~G~~r~GKS~lln~l~~~~----~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~~ 140 (1070)
-|=|+|+.|+|||||+|.||++. .-+...+..-..|..|-....- ..++|....+=++||||+|+
T Consensus 23 tlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~---iee~g~~l~LtvidtPGfGD 91 (366)
T KOG2655|consen 23 TLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVE---IEENGVKLNLTVIDTPGFGD 91 (366)
T ss_pred EEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeee---ecCCCeEEeeEEeccCCCcc
Confidence 36689999999999999999873 1111111122224444333222 24678889999999999985
No 229
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=95.93 E-value=0.012 Score=60.08 Aligned_cols=58 Identities=22% Similarity=0.359 Sum_probs=36.9
Q ss_pred EEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeeccccc
Q 001482 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (1070)
Q Consensus 74 vsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~ 139 (1070)
|+|+|++++|||+|+|.|++.. |.... ..|.|.-++..-+. .+|..+.+-++||+|..
T Consensus 3 i~viG~~~~GKSsl~~~l~~~~--~~~~~---~~t~~~~~~~~~~~---~~~~~~~~~~~D~~g~~ 60 (172)
T cd01862 3 VIILGDSGVGKTSLMNQYVNKK--FSNQY---KATIGADFLTKEVT---VDDKLVTLQIWDTAGQE 60 (172)
T ss_pred EEEECCCCCCHHHHHHHHhcCC--CCcCc---CCccceEEEEEEEE---ECCEEEEEEEEeCCChH
Confidence 7899999999999999999875 53322 22333322111111 12445677899999953
No 230
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=95.93 E-value=0.013 Score=60.38 Aligned_cols=63 Identities=21% Similarity=0.175 Sum_probs=41.1
Q ss_pred EEEEEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccc-------cCCCCceeEEEeecccc
Q 001482 71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRT-------ALDGTEYNLLLLDSEGI 138 (1070)
Q Consensus 71 v~vvsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~-------~~~g~~~~~~llDteG~ 138 (1070)
+.=|.|+|+.++|||+|+|++.+.. |... -..|.|+.+....+... .-+|..+.+-|+||+|.
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~~--~~~~---~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 73 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDNK--FNPK---FITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQ 73 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC--CCcc---CCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCCh
Confidence 3447899999999999999998765 5322 23455654433222211 01245688999999994
No 231
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=95.93 E-value=0.012 Score=59.65 Aligned_cols=56 Identities=20% Similarity=0.332 Sum_probs=38.8
Q ss_pred EEeecCCCCChhHHHHHHhCCCCCccccCCCCcccc--eEEeeccccccccCCCCceeEEEeeccccc
Q 001482 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTK--GLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (1070)
Q Consensus 74 vsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~--giw~~~~p~~~~~~~g~~~~~~llDteG~~ 139 (1070)
|.|+|..++|||+|++.+++.. |.-.. ..|. +++.|... .+|..+.+-++||+|..
T Consensus 3 i~vvG~~~vGKTsli~~~~~~~--~~~~~---~~~~~~~~~~~~~~-----~~~~~~~~~i~Dt~G~~ 60 (161)
T cd04124 3 IILLGDSAVGKSKLVERFLMDG--YEPQQ---LSTYALTLYKHNAK-----FEGKTILVDFWDTAGQE 60 (161)
T ss_pred EEEECCCCCCHHHHHHHHHhCC--CCCCc---CCceeeEEEEEEEE-----ECCEEEEEEEEeCCCch
Confidence 6789999999999999998765 63221 2233 34544432 24666888899999954
No 232
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=95.91 E-value=0.012 Score=60.58 Aligned_cols=53 Identities=32% Similarity=0.488 Sum_probs=36.0
Q ss_pred EEEeecCCCCChhHHHHHHhCCCCCc-cccCCCCcccceEEeeccccccccCCCCceeEEEeecccc
Q 001482 73 VVSVCGRARQGKSFILNQLLGRSSGF-QVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI 138 (1070)
Q Consensus 73 vvsv~G~~r~GKS~lln~l~~~~~gF-~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~ 138 (1070)
.|.++|.+++|||+|+|.|.+.. | .+++ ...+|.++-+.. + + ..+.++||||+
T Consensus 117 ~~~~~G~~~vGKstlin~l~~~~--~~~~~~-~~~~T~~~~~~~--~-----~---~~~~~iDtpG~ 170 (171)
T cd01856 117 RAMVVGIPNVGKSTLINRLRGKK--VAKVGN-KPGVTKGIQWIK--I-----S---PGIYLLDTPGI 170 (171)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--ceeecC-CCCEEeeeEEEE--e-----c---CCEEEEECCCC
Confidence 57899999999999999999875 3 2222 223565543321 1 1 24678999997
No 233
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=95.89 E-value=0.013 Score=62.39 Aligned_cols=22 Identities=36% Similarity=0.603 Sum_probs=20.1
Q ss_pred EEeecCCCCChhHHHHHHhCCC
Q 001482 74 VSVCGRARQGKSFILNQLLGRS 95 (1070)
Q Consensus 74 vsv~G~~r~GKS~lln~l~~~~ 95 (1070)
|+|+|..++|||+|+|.|++..
T Consensus 2 i~iiG~~~~GKStL~~~Ll~~~ 23 (208)
T cd04166 2 FLTCGSVDDGKSTLIGRLLYDS 23 (208)
T ss_pred EEEEECCCCCHHHHHHHHHHHc
Confidence 7899999999999999998754
No 234
>PF13514 AAA_27: AAA domain
Probab=95.89 E-value=11 Score=50.67 Aligned_cols=25 Identities=28% Similarity=0.387 Sum_probs=20.5
Q ss_pred eecCCCCChhHHHHHHhCCCCCccc
Q 001482 76 VCGRARQGKSFILNQLLGRSSGFQV 100 (1070)
Q Consensus 76 v~G~~r~GKS~lln~l~~~~~gF~~ 100 (1070)
|.||.=+||||+|.+|..-.=||+.
T Consensus 1 IyGpNEAGKST~l~fI~~lLFGfp~ 25 (1111)
T PF13514_consen 1 IYGPNEAGKSTLLAFIRDLLFGFPT 25 (1111)
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCC
Confidence 6899999999999998766655644
No 235
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=95.88 E-value=0.015 Score=60.82 Aligned_cols=65 Identities=18% Similarity=0.205 Sum_probs=36.9
Q ss_pred EEeecCCCCChhHHHHHHhCCCC--CccccC------CCCcccceEEeecccccc---ccCCCCceeEEEeecccc
Q 001482 74 VSVCGRARQGKSFILNQLLGRSS--GFQVAS------THRPCTKGLWLWSAPLKR---TALDGTEYNLLLLDSEGI 138 (1070)
Q Consensus 74 vsv~G~~r~GKS~lln~l~~~~~--gF~~~~------~~~~~t~giw~~~~p~~~---~~~~g~~~~~~llDteG~ 138 (1070)
|+|+|..++|||+|+|.|.+... -|.... .....+...+.|..+-.. ..+++..+.+.|+||+|.
T Consensus 3 i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~ 78 (192)
T cd01889 3 VGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGH 78 (192)
T ss_pred EEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCc
Confidence 78999999999999999997421 121111 011112222333321100 012344678999999996
No 236
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=95.86 E-value=0.012 Score=61.13 Aligned_cols=65 Identities=23% Similarity=0.304 Sum_probs=42.3
Q ss_pred EEEeecCCCCChhHHHHHHhCCC---CCccccC-CCCcccceEEeeccccccccCCCCceeEEEeecccccc
Q 001482 73 VVSVCGRARQGKSFILNQLLGRS---SGFQVAS-THRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (1070)
Q Consensus 73 vvsv~G~~r~GKS~lln~l~~~~---~gF~~~~-~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~~ 140 (1070)
=|-|+|+.+.|||+|.|.||... ++-.+.. ..-|.|.-|-.-...+ ..+|-+..+-++||||||+
T Consensus 48 NIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvi---eE~gVklkltviDTPGfGD 116 (336)
T KOG1547|consen 48 NIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVI---EEKGVKLKLTVIDTPGFGD 116 (336)
T ss_pred EEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeee---eecceEEEEEEecCCCccc
Confidence 36678999999999999999642 1222221 1234454444443333 2457778899999999985
No 237
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=95.86 E-value=0.012 Score=59.05 Aligned_cols=56 Identities=27% Similarity=0.345 Sum_probs=35.6
Q ss_pred EEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeecccc
Q 001482 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI 138 (1070)
Q Consensus 74 vsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~ 138 (1070)
|.|+|+.++|||+|+|+|.+.. |.-. ..|++...+... +. .+|..+.+-++||+|.
T Consensus 4 i~iiG~~~vGKTsl~~~~~~~~--~~~~--~~~t~~~~~~~~--~~---~~~~~~~~~i~Dt~G~ 59 (162)
T cd04138 4 LVVVGAGGVGKSALTIQLIQNH--FVDE--YDPTIEDSYRKQ--VV---IDGETCLLDILDTAGQ 59 (162)
T ss_pred EEEECCCCCCHHHHHHHHHhCC--CcCC--cCCcchheEEEE--EE---ECCEEEEEEEEECCCC
Confidence 6889999999999999999765 5221 122222223221 11 2344566778999995
No 238
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=95.85 E-value=3.4 Score=44.66 Aligned_cols=30 Identities=27% Similarity=0.465 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001482 638 EQALSAQEEVEEWKRKYGVAVREAKAALEK 667 (1070)
Q Consensus 638 ~e~q~lq~el~e~k~~le~e~~elk~~le~ 667 (1070)
..++.++.+|.+|..+.+..+..|+.+++.
T Consensus 63 ~~l~~ak~eLqe~eek~e~~l~~Lq~ql~~ 92 (258)
T PF15397_consen 63 KQLQQAKAELQEWEEKEESKLSKLQQQLEQ 92 (258)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 445566666666666666666665544443
No 239
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=95.84 E-value=7.3 Score=48.42 Aligned_cols=55 Identities=25% Similarity=0.221 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001482 766 IMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGK 820 (1070)
Q Consensus 766 ~le~e~~~le~~l~~~~~~~ee~~e~l~~~e~e~~~~~e~~~~l~~e~~~a~~ek 820 (1070)
.+..+...+..++....+...+.++++..++.++..+..........+..++.+.
T Consensus 395 ~~~~e~q~L~ekl~~lek~~re~qeri~~LE~ELr~l~~~A~E~q~~LnsAQDEL 449 (717)
T PF09730_consen 395 RLESEVQNLKEKLMSLEKSSREDQERISELEKELRALSKLAGESQGSLNSAQDEL 449 (717)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3444445555555555554444455666666666655555555444444444443
No 240
>PRK04213 GTP-binding protein; Provisional
Probab=95.84 E-value=0.014 Score=61.60 Aligned_cols=57 Identities=23% Similarity=0.277 Sum_probs=37.3
Q ss_pred CEEEEEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeecccccc
Q 001482 70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (1070)
Q Consensus 70 ~v~vvsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~~ 140 (1070)
+..-|.|+|..++|||+|+|.|.|.. |.++... .+| +... .+. .+ .+.++||+|++.
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~--~~~~~~~-~~t--~~~~--~~~----~~---~~~l~Dt~G~~~ 64 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKK--VRVGKRP-GVT--RKPN--HYD----WG---DFILTDLPGFGF 64 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC--CccCCCC-cee--eCce--EEe----ec---ceEEEeCCcccc
Confidence 34568999999999999999999875 6544321 112 2111 111 12 478899999753
No 241
>COG3596 Predicted GTPase [General function prediction only]
Probab=95.83 E-value=0.0092 Score=64.03 Aligned_cols=60 Identities=32% Similarity=0.430 Sum_probs=39.0
Q ss_pred CCEEEEEeecCCCCChhHHHHHHhCCC--CCccccCCCCcccceEEeeccccccccCCCCceeEEEeecccccc
Q 001482 69 EPIGVVSVCGRARQGKSFILNQLLGRS--SGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (1070)
Q Consensus 69 ~~v~vvsv~G~~r~GKS~lln~l~~~~--~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~~ 140 (1070)
.||. |=++|.+|.|||.|.|.||+.. ..=.|+.++++. .-.|.. .+| ..++|+||||++.
T Consensus 38 ~pvn-vLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~-~~~~~~--------~~~--~~l~lwDtPG~gd 99 (296)
T COG3596 38 EPVN-VLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDIT-TRLRLS--------YDG--ENLVLWDTPGLGD 99 (296)
T ss_pred Ccee-EEEecCCCCcHHHHHHHHHhccCceeeecccCCCch-hhHHhh--------ccc--cceEEecCCCccc
Confidence 4554 4589999999999999999542 111233344433 233332 233 4789999999985
No 242
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=95.83 E-value=0.014 Score=62.25 Aligned_cols=59 Identities=25% Similarity=0.346 Sum_probs=40.7
Q ss_pred EEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeeccccc
Q 001482 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (1070)
Q Consensus 74 vsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~ 139 (1070)
|.|+|+.++|||+|+|.|++.. |... ...|.|+-.+...+. ..+|..+.+.+.||+|..
T Consensus 5 IvvvG~~~vGKTsLi~~l~~~~--~~~~---~~~ti~~d~~~~~i~--~~~~~~~~l~i~Dt~G~~ 63 (211)
T cd04111 5 LIVIGDSTVGKSSLLKRFTEGR--FAEV---SDPTVGVDFFSRLIE--IEPGVRIKLQLWDTAGQE 63 (211)
T ss_pred EEEECCCCCCHHHHHHHHHcCC--CCCC---CCceeceEEEEEEEE--ECCCCEEEEEEEeCCcch
Confidence 7899999999999999999765 5322 234666543332221 124666889999999953
No 243
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=95.81 E-value=3.1 Score=43.78 Aligned_cols=52 Identities=13% Similarity=0.298 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001482 735 EISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFE 786 (1070)
Q Consensus 735 e~~~l~~ei~~l~~~le~~~~~i~~le~~l~~le~e~~~le~~l~~~~~~~e 786 (1070)
.+..++....++...++.....+..+...-..+...+.+....+....+++.
T Consensus 84 dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~ 135 (207)
T PF05010_consen 84 DLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQ 135 (207)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444333444444444444444444443
No 244
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=95.80 E-value=0.013 Score=61.84 Aligned_cols=58 Identities=21% Similarity=0.297 Sum_probs=39.7
Q ss_pred EEEEEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEE--eeccccccccCCCCceeEEEeecccc
Q 001482 71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLW--LWSAPLKRTALDGTEYNLLLLDSEGI 138 (1070)
Q Consensus 71 v~vvsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw--~~~~p~~~~~~~g~~~~~~llDteG~ 138 (1070)
+.=|.|+|+.++|||+|++.|++.. |.. .-..|.|+- +|... .+|..+.+.|+||+|.
T Consensus 6 ~~kivvvG~~~vGKTsli~~l~~~~--~~~---~~~~t~~~~~~~~~~~-----~~~~~~~l~l~D~~G~ 65 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFADNT--FSG---SYITTIGVDFKIRTVE-----INGERVKLQIWDTAGQ 65 (199)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC--CCC---CcCccccceeEEEEEE-----ECCEEEEEEEEeCCCc
Confidence 3458899999999999999999876 532 123455533 33221 2355678889999995
No 245
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=95.79 E-value=0.014 Score=58.92 Aligned_cols=58 Identities=24% Similarity=0.375 Sum_probs=37.2
Q ss_pred EEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeeccccc
Q 001482 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (1070)
Q Consensus 74 vsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~ 139 (1070)
|.|+|+.++|||+|+|.|++.. |... ...|.|.-.-...+. .++..+.+.|+||+|..
T Consensus 3 i~v~G~~~~GKSsli~~l~~~~--~~~~---~~~~~~~~~~~~~~~---~~~~~~~~~l~D~~g~~ 60 (161)
T cd01863 3 ILLIGDSGVGKSSLLLRFTDDT--FDPD---LAATIGVDFKVKTLT---VDGKKVKLAIWDTAGQE 60 (161)
T ss_pred EEEECCCCCCHHHHHHHHHcCC--CCcc---cCCcccceEEEEEEE---ECCEEEEEEEEECCCch
Confidence 7899999999999999999775 5331 122333321111110 13445789999999953
No 246
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=95.79 E-value=0.021 Score=63.46 Aligned_cols=59 Identities=31% Similarity=0.360 Sum_probs=37.9
Q ss_pred CEEEEEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeecccccc
Q 001482 70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (1070)
Q Consensus 70 ~v~vvsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~~ 140 (1070)
+...|.|+|.+++|||+|+|.|.+.. ...+++. -.+|++. -|... +. .+.|+||||+..
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~-~~~~~~~-~g~T~~~-~~~~~-------~~--~~~l~DtPG~~~ 175 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKK-VAKVGNR-PGVTKGQ-QWIKL-------SD--GLELLDTPGILW 175 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCC-ccccCCC-CCeecce-EEEEe-------CC--CEEEEECCCccc
Confidence 34579999999999999999999864 1233322 1234442 22210 11 368899999853
No 247
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=95.78 E-value=0.026 Score=58.80 Aligned_cols=66 Identities=18% Similarity=0.235 Sum_probs=40.5
Q ss_pred HHHHHHHccCCCEEEEEeecCCCCChhHHHHHHhCCCCCcc-ccCCCCcccceEEeeccccccccCCCCceeEEEeeccc
Q 001482 59 EAVAALQLVKEPIGVVSVCGRARQGKSFILNQLLGRSSGFQ-VASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEG 137 (1070)
Q Consensus 59 eal~~l~~~~~~v~vvsv~G~~r~GKS~lln~l~~~~~gF~-~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG 137 (1070)
.+++.|.....+. -|.|+|+.++|||+|+|.|.+.. |. ..++..+ +.|...| + .+.+.++||+|
T Consensus 8 ~~~~~~~~~~~~~-ki~ilG~~~~GKStLi~~l~~~~--~~~~~~T~~~-~~~~i~~---------~--~~~~~l~D~~G 72 (190)
T cd00879 8 NVLSSLGLYNKEA-KILFLGLDNAGKTTLLHMLKDDR--LAQHVPTLHP-TSEELTI---------G--NIKFKTFDLGG 72 (190)
T ss_pred HHHHHhhcccCCC-EEEEECCCCCCHHHHHHHHhcCC--CcccCCccCc-ceEEEEE---------C--CEEEEEEECCC
Confidence 3455554333444 45999999999999999999765 32 1122222 2232222 1 25688999999
Q ss_pred cc
Q 001482 138 ID 139 (1070)
Q Consensus 138 ~~ 139 (1070)
..
T Consensus 73 ~~ 74 (190)
T cd00879 73 HE 74 (190)
T ss_pred CH
Confidence 53
No 248
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=95.77 E-value=0.016 Score=61.11 Aligned_cols=58 Identities=26% Similarity=0.221 Sum_probs=39.5
Q ss_pred EEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeecccc
Q 001482 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI 138 (1070)
Q Consensus 74 vsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~ 138 (1070)
|.|+|+.++|||+|+|+|++.. |.- ....|.|.-.....+. ..+|..+.+.|+||+|.
T Consensus 3 ivivG~~~vGKTsli~~l~~~~--~~~---~~~~t~~~d~~~~~v~--~~~~~~~~l~l~Dt~G~ 60 (201)
T cd04107 3 VLVIGDLGVGKTSIIKRYVHGI--FSQ---HYKATIGVDFALKVIE--WDPNTVVRLQLWDIAGQ 60 (201)
T ss_pred EEEECCCCCCHHHHHHHHHcCC--CCC---CCCCceeEEEEEEEEE--ECCCCEEEEEEEECCCc
Confidence 6799999999999999999765 532 1234666533222121 12266788999999995
No 249
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=95.76 E-value=7.4 Score=47.87 Aligned_cols=13 Identities=15% Similarity=0.506 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q 001482 929 AQAKLDEMQQELT 941 (1070)
Q Consensus 929 ~~~~l~~le~el~ 941 (1070)
++..+..+...+.
T Consensus 606 leEE~e~L~~kle 618 (698)
T KOG0978|consen 606 LEEELERLKRKLE 618 (698)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 250
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=95.72 E-value=4.4 Score=44.90 Aligned_cols=63 Identities=13% Similarity=0.263 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001482 719 RLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSE 781 (1070)
Q Consensus 719 ~~el~e~e~ki~~~e~e~~~l~~ei~~l~~~le~~~~~i~~le~~l~~le~e~~~le~~l~~~ 781 (1070)
-.++.++..++..+..++.....+......++..+.+++..++.+.+.+..+..++...+...
T Consensus 205 v~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~s 267 (306)
T PF04849_consen 205 VKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQAS 267 (306)
T ss_pred HHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 344444444444444444444444444445555555555555555555555554444444333
No 251
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=95.71 E-value=0.031 Score=66.51 Aligned_cols=54 Identities=35% Similarity=0.629 Sum_probs=35.5
Q ss_pred EEEeecCCCCChhHHHHHHhCCCCCccccCCCCccc----ceEEeeccccccccCCCCceeEEEeeccccc
Q 001482 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCT----KGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (1070)
Q Consensus 73 vvsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t----~giw~~~~p~~~~~~~g~~~~~~llDteG~~ 139 (1070)
.|+|+|.+++|||+|+|.|+|....+ .+....+| .+..-|. | ..+.|+||+|+.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~--v~~~~g~t~d~~~~~~~~~---------~--~~~~liDTpG~~ 58 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAI--VSDTPGVTRDRKYGDAEWG---------G--REFILIDTGGIE 58 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcce--ecCCCCcccCceEEEEEEC---------C--eEEEEEECCCCC
Confidence 38999999999999999999876222 11111122 2322231 2 358889999985
No 252
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=95.71 E-value=0.016 Score=57.98 Aligned_cols=57 Identities=30% Similarity=0.429 Sum_probs=36.7
Q ss_pred EEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeeccccc
Q 001482 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (1070)
Q Consensus 74 vsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~ 139 (1070)
|.|+|+.++|||+|+|.|++.. |.-. ..+.+.-.+.+. +. .+|..+.+.++|++|..
T Consensus 2 i~i~G~~~~GKTsli~~l~~~~--~~~~--~~~~~~~~~~~~--~~---~~~~~~~~~l~D~~g~~ 58 (160)
T cd00876 2 VVVLGAGGVGKSAITIQFVKGT--FVEE--YDPTIEDSYRKT--IV---VDGETYTLDILDTAGQE 58 (160)
T ss_pred EEEECCCCCCHHHHHHHHHhCC--CCcC--cCCChhHeEEEE--EE---ECCEEEEEEEEECCChH
Confidence 7899999999999999999775 4222 223333222221 11 12345778899999954
No 253
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=95.71 E-value=0.016 Score=59.05 Aligned_cols=58 Identities=24% Similarity=0.421 Sum_probs=38.8
Q ss_pred EEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeecccccc
Q 001482 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (1070)
Q Consensus 74 vsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~~ 140 (1070)
|+++|+.++|||+|+|.+.+.. |. .+..+.+...|.. ++. -+|..+.+-++||+|...
T Consensus 4 i~liG~~~~GKTsli~~~~~~~--~~--~~~~~t~~~~~~~--~~~---~~~~~~~~~i~Dt~G~~~ 61 (168)
T cd04177 4 IVVLGAGGVGKSALTVQFVQNV--FI--ESYDPTIEDSYRK--QVE---IDGRQCDLEILDTAGTEQ 61 (168)
T ss_pred EEEECCCCCCHHHHHHHHHhCC--CC--cccCCcchheEEE--EEE---ECCEEEEEEEEeCCCccc
Confidence 7899999999999999998665 52 2233434334422 221 134557888999999653
No 254
>PLN03118 Rab family protein; Provisional
Probab=95.70 E-value=0.016 Score=61.74 Aligned_cols=57 Identities=23% Similarity=0.316 Sum_probs=38.4
Q ss_pred EEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeeccccc
Q 001482 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (1070)
Q Consensus 74 vsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~ 139 (1070)
|.|+|+.++|||+|+|.|++.. |.. ...|.|+-.+...+. .+|..+.+.|+||+|..
T Consensus 17 v~ivG~~~vGKTsli~~l~~~~--~~~----~~~t~~~~~~~~~~~---~~~~~~~l~l~Dt~G~~ 73 (211)
T PLN03118 17 ILLIGDSGVGKSSLLVSFISSS--VED----LAPTIGVDFKIKQLT---VGGKRLKLTIWDTAGQE 73 (211)
T ss_pred EEEECcCCCCHHHHHHHHHhCC--CCC----cCCCceeEEEEEEEE---ECCEEEEEEEEECCCch
Confidence 6689999999999999999865 522 123555433222221 23556789999999953
No 255
>PRK00093 GTP-binding protein Der; Reviewed
Probab=95.70 E-value=0.031 Score=66.65 Aligned_cols=55 Identities=36% Similarity=0.633 Sum_probs=37.5
Q ss_pred EEEeecCCCCChhHHHHHHhCCCCCccccCCCCccc----ceEEeeccccccccCCCCceeEEEeecccccc
Q 001482 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCT----KGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (1070)
Q Consensus 73 vvsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t----~giw~~~~p~~~~~~~g~~~~~~llDteG~~~ 140 (1070)
.|+|+|..++|||+|+|.|.|....+ ++ ....+| .+.+.|. | +.+.|+||+|+..
T Consensus 3 ~I~ivG~~~vGKStL~n~l~~~~~~~-v~-~~~~~t~d~~~~~~~~~---------~--~~~~liDT~G~~~ 61 (435)
T PRK00093 3 VVAIVGRPNVGKSTLFNRLTGKRDAI-VA-DTPGVTRDRIYGEAEWL---------G--REFILIDTGGIEP 61 (435)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcee-eC-CCCCCcccceEEEEEEC---------C--cEEEEEECCCCCC
Confidence 58999999999999999999876221 11 111223 3334442 3 5688999999864
No 256
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=95.69 E-value=0.013 Score=56.85 Aligned_cols=56 Identities=29% Similarity=0.510 Sum_probs=38.5
Q ss_pred EEEEeecCCCCChhHHHHHHhCCCC-CccccCCCCcccceEEeeccccccccCCCCceeEEEee
Q 001482 72 GVVSVCGRARQGKSFILNQLLGRSS-GFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLD 134 (1070)
Q Consensus 72 ~vvsv~G~~r~GKS~lln~l~~~~~-gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llD 134 (1070)
-||+++||.++|||||+.++.|... .| .||.-+|+-...+.........+-++|=|
T Consensus 29 eivtlMGPSGcGKSTLls~~~G~La~~F-------~~~G~~~l~~~~l~~lPa~qRq~GiLFQD 85 (213)
T COG4136 29 EIVTLMGPSGCGKSTLLSWMIGALAGQF-------SCTGELWLNEQRLDMLPAAQRQIGILFQD 85 (213)
T ss_pred cEEEEECCCCccHHHHHHHHHhhcccCc-------ceeeEEEECCeeccccchhhhheeeeecc
Confidence 3899999999999999999998753 35 57888998766543222222234455444
No 257
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=95.69 E-value=0.012 Score=65.48 Aligned_cols=66 Identities=18% Similarity=0.291 Sum_probs=36.5
Q ss_pred EEeecCCCCChhHHHHHHhCCCCCccc---cCCCCcccceEEeeccccccccCCCCceeEEEeecccccc
Q 001482 74 VSVCGRARQGKSFILNQLLGRSSGFQV---ASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (1070)
Q Consensus 74 vsv~G~~r~GKS~lln~l~~~~~gF~~---~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~~ 140 (1070)
|=|+|..|+|||+|+|.|++..-.-.. .+...+....+-+-...+.. ..+|..+.+-++||||+|+
T Consensus 7 ImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l-~e~~~~l~LtiiDTpGfGd 75 (281)
T PF00735_consen 7 IMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVEL-EENGVKLNLTIIDTPGFGD 75 (281)
T ss_dssp EEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEE-EETCEEEEEEEEEEC-CSS
T ss_pred EEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEe-ccCCcceEEEEEeCCCccc
Confidence 568999999999999999986411110 00111111222222222221 2356678899999999974
No 258
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=95.69 E-value=3.4 Score=43.43 Aligned_cols=39 Identities=10% Similarity=0.057 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001482 735 EISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVY 773 (1070)
Q Consensus 735 e~~~l~~ei~~l~~~le~~~~~i~~le~~l~~le~e~~~ 773 (1070)
+...++..+....-++.++...+..-.+++..|..-+++
T Consensus 162 e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~ELtkICDe 200 (207)
T PF05010_consen 162 ELLALQASLKKEEMKVQSLEESLEQKTKENEELTKICDE 200 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444434444444333333
No 259
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=95.67 E-value=0.018 Score=58.65 Aligned_cols=58 Identities=24% Similarity=0.342 Sum_probs=38.5
Q ss_pred EEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeecccccc
Q 001482 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (1070)
Q Consensus 74 vsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~~ 140 (1070)
|.|+|+.++|||+|+|+|++.. |... ..+.+...+....+ .+|..+.+.++||+|...
T Consensus 3 i~i~G~~~~GKSsli~~l~~~~--~~~~--~~~~~~~~~~~~~~-----~~~~~~~l~~~D~~g~~~ 60 (171)
T cd00157 3 IVVVGDGAVGKTCLLISYTTGK--FPTE--YVPTVFDNYSATVT-----VDGKQVNLGLWDTAGQEE 60 (171)
T ss_pred EEEECCCCCCHHHHHHHHHhCC--CCCC--CCCceeeeeEEEEE-----ECCEEEEEEEEeCCCccc
Confidence 6799999999999999999876 5221 12222222322222 235667899999999653
No 260
>PRK00093 GTP-binding protein Der; Reviewed
Probab=95.65 E-value=0.036 Score=66.10 Aligned_cols=62 Identities=29% Similarity=0.475 Sum_probs=37.4
Q ss_pred CEEEEEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeecccccc
Q 001482 70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (1070)
Q Consensus 70 ~v~vvsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~~ 140 (1070)
+..-|+|+|..++|||+|+|.|+|... +.+++. ...|.-. + ..++. .+| ..+.|+||+|+..
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~-~~~~~~-~gtt~~~-~-~~~~~---~~~--~~~~lvDT~G~~~ 233 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEER-VIVSDI-AGTTRDS-I-DTPFE---RDG--QKYTLIDTAGIRR 233 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCc-eeecCC-CCceEEE-E-EEEEE---ECC--eeEEEEECCCCCC
Confidence 345799999999999999999998752 222221 1122111 1 01111 123 4578899999753
No 261
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=95.64 E-value=0.018 Score=59.95 Aligned_cols=58 Identities=21% Similarity=0.300 Sum_probs=39.2
Q ss_pred EEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeeccccc
Q 001482 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (1070)
Q Consensus 74 vsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~ 139 (1070)
|.|+|+.++|||+|+|+|.+.. |... ...|.|.-.....+. .+|..+.+.++||+|..
T Consensus 3 i~v~G~~~vGKSsli~~~~~~~--~~~~---~~~t~~~~~~~~~~~---~~~~~~~~~i~Dt~g~~ 60 (188)
T cd04125 3 VVIIGDYGVGKSSLLKRFTEDE--FSES---TKSTIGVDFKIKTVY---IENKIIKLQIWDTNGQE 60 (188)
T ss_pred EEEECCCCCCHHHHHHHHhcCC--CCCC---CCCceeeEEEEEEEE---ECCEEEEEEEEECCCcH
Confidence 7899999999999999999776 6421 123555422222221 24556788899999953
No 262
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=95.64 E-value=0.018 Score=58.81 Aligned_cols=58 Identities=16% Similarity=0.267 Sum_probs=39.8
Q ss_pred EEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeeccccc
Q 001482 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (1070)
Q Consensus 74 vsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~ 139 (1070)
|.|+|+.++|||+|+|+++... |... ...|.|+-+....+. .++..+.+.++||+|..
T Consensus 3 i~vvG~~~vGKTsli~~~~~~~--~~~~---~~~t~~~~~~~~~~~---~~~~~~~l~i~Dt~G~~ 60 (166)
T cd00877 3 LVLVGDGGTGKTTFVKRHLTGE--FEKK---YVATLGVEVHPLDFH---TNRGKIRFNVWDTAGQE 60 (166)
T ss_pred EEEECCCCCCHHHHHHHHHhCC--CCCC---CCCceeeEEEEEEEE---ECCEEEEEEEEECCCCh
Confidence 7899999999999999998654 5322 234666543322221 24556889999999964
No 263
>PRK03003 GTP-binding protein Der; Reviewed
Probab=95.64 E-value=0.045 Score=65.86 Aligned_cols=77 Identities=30% Similarity=0.513 Sum_probs=45.7
Q ss_pred eeeCHHHHHHHHccC-CCEEEEEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEE
Q 001482 54 FRMDPEAVAALQLVK-EPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLL 132 (1070)
Q Consensus 54 ~~~~~eal~~l~~~~-~~v~vvsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~l 132 (1070)
+.++.+-+..|.... .+...|+|+|.+++|||+|+|.|+|... +.+.+. ...|...-.+.. ..+| ..+.|
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~V~IvG~~nvGKSSL~nrl~~~~~-~~v~~~-~gvT~d~~~~~~-----~~~~--~~~~l 90 (472)
T PRK03003 20 WELDDEDLAELEAAEGGPLPVVAVVGRPNVGKSTLVNRILGRRE-AVVEDV-PGVTRDRVSYDA-----EWNG--RRFTV 90 (472)
T ss_pred cccchhhHHhhhcccCCCCCEEEEEcCCCCCHHHHHHHHhCcCc-ccccCC-CCCCEeeEEEEE-----EECC--cEEEE
Confidence 556666665555322 3456799999999999999999998641 122221 112222211110 0123 35788
Q ss_pred eeccccc
Q 001482 133 LDSEGID 139 (1070)
Q Consensus 133 lDteG~~ 139 (1070)
+||+|+.
T Consensus 91 ~DT~G~~ 97 (472)
T PRK03003 91 VDTGGWE 97 (472)
T ss_pred EeCCCcC
Confidence 9999975
No 264
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=95.64 E-value=0.017 Score=59.17 Aligned_cols=57 Identities=21% Similarity=0.346 Sum_probs=38.1
Q ss_pred EEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeeccccc
Q 001482 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (1070)
Q Consensus 74 vsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~ 139 (1070)
|.|+|+.++|||+|++.|.+.. |.-. ..|++...+.. ++ ..+|..+.+.++||+|..
T Consensus 4 i~iiG~~~~GKTsl~~~~~~~~--~~~~--~~~t~~~~~~~--~~---~~~~~~~~l~i~Dt~G~~ 60 (175)
T cd01870 4 LVIVGDGACGKTCLLIVFSKDQ--FPEV--YVPTVFENYVA--DI---EVDGKQVELALWDTAGQE 60 (175)
T ss_pred EEEECCCCCCHHHHHHHHhcCC--CCCC--CCCccccceEE--EE---EECCEEEEEEEEeCCCch
Confidence 7899999999999999999865 5321 22322222322 22 124566789999999964
No 265
>COG1162 Predicted GTPases [General function prediction only]
Probab=95.63 E-value=0.01 Score=65.10 Aligned_cols=59 Identities=24% Similarity=0.393 Sum_probs=37.6
Q ss_pred EEEeecCCCCChhHHHHHHhCCCCCccccC------CCCcccceEEeeccccccccCCCCceeEEEeecccccccC
Q 001482 73 VVSVCGRARQGKSFILNQLLGRSSGFQVAS------THRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYD 142 (1070)
Q Consensus 73 vvsv~G~~r~GKS~lln~l~~~~~gF~~~~------~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~~~~ 142 (1070)
+..++|+.|.|||+|+|.|.+... ..++. --+-+|.-.-|..-|. +| +++|||||.+++
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~-~~t~eIS~~~~rGkHTTt~~~l~~l~~-----gG-----~iiDTPGf~~~~ 230 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELN-QKTGEISEKLGRGRHTTTHVELFPLPG-----GG-----WIIDTPGFRSLG 230 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhh-hhhhhhcccCCCCCCccceEEEEEcCC-----CC-----EEEeCCCCCccC
Confidence 455899999999999999997421 11111 1123456666664431 23 678999986543
No 266
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=95.60 E-value=0.018 Score=57.76 Aligned_cols=57 Identities=21% Similarity=0.420 Sum_probs=36.1
Q ss_pred EEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeecccc
Q 001482 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI 138 (1070)
Q Consensus 74 vsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~ 138 (1070)
|+|+|+.++|||+|+|.|++.. |.- ...+ |.+.-++...+. ..|..+.+.++||+|.
T Consensus 3 i~i~G~~~~GKStli~~l~~~~--~~~--~~~~-~~~~~~~~~~~~---~~~~~~~~~~~D~~g~ 59 (162)
T cd04123 3 VVLLGEGRVGKTSLVLRYVENK--FNE--KHES-TTQASFFQKTVN---IGGKRIDLAIWDTAGQ 59 (162)
T ss_pred EEEECCCCCCHHHHHHHHHhCC--CCC--CcCC-ccceeEEEEEEE---ECCEEEEEEEEECCch
Confidence 7899999999999999999765 422 1112 222212221121 1245578899999994
No 267
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=95.59 E-value=0.041 Score=55.49 Aligned_cols=56 Identities=36% Similarity=0.461 Sum_probs=35.9
Q ss_pred EEEEEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeecccc
Q 001482 71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI 138 (1070)
Q Consensus 71 v~vvsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~ 138 (1070)
...|.++|..++|||+|+|.|.+.. ...++++.. +|..+-+... + ..+.|+||+|+
T Consensus 101 ~~~~~~ig~~~~Gkssl~~~l~~~~-~~~~~~~~~-~t~~~~~~~~-------~---~~~~~~DtpGi 156 (156)
T cd01859 101 EGKVGVVGYPNVGKSSIINALKGRH-SASTSPSPG-YTKGEQLVKI-------T---SKIYLLDTPGV 156 (156)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC-ccccCCCCC-eeeeeEEEEc-------C---CCEEEEECcCC
Confidence 3455999999999999999999753 234444332 3444321111 1 24788999995
No 268
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=95.58 E-value=3 Score=49.35 Aligned_cols=16 Identities=19% Similarity=0.264 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 001482 871 LLEARVEEREKEIESL 886 (1070)
Q Consensus 871 ~le~~v~ele~eie~L 886 (1070)
.+..++...+.++..+
T Consensus 250 ~~~~~l~~~~~~l~~~ 265 (423)
T TIGR01843 250 EAQARLAELRERLNKA 265 (423)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444443
No 269
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.57 E-value=0.012 Score=62.33 Aligned_cols=23 Identities=39% Similarity=0.537 Sum_probs=21.0
Q ss_pred EEEeecCCCCChhHHHHHHhCCC
Q 001482 73 VVSVCGRARQGKSFILNQLLGRS 95 (1070)
Q Consensus 73 vvsv~G~~r~GKS~lln~l~~~~ 95 (1070)
+|+|+||.|||||||||.|-|-.
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 89999999999999999987654
No 270
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=95.56 E-value=0.019 Score=68.12 Aligned_cols=58 Identities=31% Similarity=0.450 Sum_probs=36.6
Q ss_pred EEEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeeccccc
Q 001482 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (1070)
Q Consensus 73 vvsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~ 139 (1070)
-|+|+|++++|||+|+|.|++....| + +....+|..+... ++. .+| +.+.++||+|+.
T Consensus 205 kVvIvG~~nvGKSSLiN~L~~~~~ai-v-s~~pgtTrd~~~~--~i~---~~g--~~v~l~DTaG~~ 262 (442)
T TIGR00450 205 KLAIVGSPNVGKSSLLNALLKQDRAI-V-SDIKGTTRDVVEG--DFE---LNG--ILIKLLDTAGIR 262 (442)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCcc-c-CCCCCcEEEEEEE--EEE---ECC--EEEEEeeCCCcc
Confidence 47799999999999999999875322 1 2222333332211 111 123 467899999975
No 271
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=95.56 E-value=0.024 Score=58.89 Aligned_cols=54 Identities=19% Similarity=0.228 Sum_probs=36.4
Q ss_pred EEEEeecCCCCChhHHHHHHhCCCCCccc-cCCCCcccceEEeeccccccccCCCCceeEEEeeccccc
Q 001482 72 GVVSVCGRARQGKSFILNQLLGRSSGFQV-ASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (1070)
Q Consensus 72 ~vvsv~G~~r~GKS~lln~l~~~~~gF~~-~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~ 139 (1070)
.-|.|+|+.++|||+|+|.|.+.. |.. .++..+ +.+.+.+ ..+.+.++||+|..
T Consensus 18 ~~i~ivG~~~~GKTsli~~l~~~~--~~~~~~t~~~-~~~~~~~-----------~~~~~~~~D~~G~~ 72 (184)
T smart00178 18 AKILFLGLDNAGKTTLLHMLKNDR--LAQHQPTQHP-TSEELAI-----------GNIKFTTFDLGGHQ 72 (184)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC--CcccCCcccc-ceEEEEE-----------CCEEEEEEECCCCH
Confidence 457899999999999999999864 432 222222 3333322 13678899999964
No 272
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=95.55 E-value=0.04 Score=61.08 Aligned_cols=22 Identities=23% Similarity=0.452 Sum_probs=19.7
Q ss_pred EEeecCCCCChhHHHHHHhCCC
Q 001482 74 VSVCGRARQGKSFILNQLLGRS 95 (1070)
Q Consensus 74 vsv~G~~r~GKS~lln~l~~~~ 95 (1070)
|+|+|..++|||+|+|.|++..
T Consensus 2 i~ivG~~gsGKStL~~~Ll~~~ 23 (268)
T cd04170 2 IALVGHSGSGKTTLAEALLYAT 23 (268)
T ss_pred EEEECCCCCCHHHHHHHHHHhc
Confidence 7899999999999999998643
No 273
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=95.54 E-value=0.021 Score=58.02 Aligned_cols=58 Identities=19% Similarity=0.256 Sum_probs=36.8
Q ss_pred EEEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeeccccc
Q 001482 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (1070)
Q Consensus 73 vvsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~ 139 (1070)
-|.|+|+.++|||+|+|.+++.. |... ..|.+...... .+ ..++..+.+.++||+|..
T Consensus 3 kv~~vG~~~vGKTsli~~~~~~~--f~~~--~~~t~~~~~~~--~~---~~~~~~~~l~i~Dt~G~~ 60 (165)
T cd04140 3 RVVVFGAGGVGKSSLVLRFVKGT--FRES--YIPTIEDTYRQ--VI---SCSKNICTLQITDTTGSH 60 (165)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC--CCCC--cCCcchheEEE--EE---EECCEEEEEEEEECCCCC
Confidence 37899999999999999999765 6422 11222222211 11 112345778899999964
No 274
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=95.54 E-value=0.055 Score=64.36 Aligned_cols=62 Identities=29% Similarity=0.418 Sum_probs=37.2
Q ss_pred EEEEEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeeccccccc
Q 001482 71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAY 141 (1070)
Q Consensus 71 v~vvsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~~~ 141 (1070)
..-|+|+|.+++|||+|+|.|+|.... .+++ ...+|.... ..++. .+| ..+.|+||+|+...
T Consensus 172 ~~~v~ivG~~~~GKSsLin~l~~~~~~-~~~~-~~gtt~~~~--~~~~~---~~~--~~~~liDT~G~~~~ 233 (429)
T TIGR03594 172 PIKIAIIGRPNVGKSTLVNALLGEERV-IVSD-IAGTTRDSI--DIPFE---RNG--KKYLLIDTAGIRRK 233 (429)
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCee-ecCC-CCCceECcE--eEEEE---ECC--cEEEEEECCCcccc
Confidence 356899999999999999999987521 1111 112222111 11111 123 36889999998643
No 275
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=95.53 E-value=0.02 Score=58.98 Aligned_cols=54 Identities=28% Similarity=0.412 Sum_probs=35.9
Q ss_pred EEeecCCCCChhHHHHHHhCCCCCccc--cCCC-CcccceEEeeccccccccCCCCceeEEEeeccccc
Q 001482 74 VSVCGRARQGKSFILNQLLGRSSGFQV--ASTH-RPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (1070)
Q Consensus 74 vsv~G~~r~GKS~lln~l~~~~~gF~~--~~~~-~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~ 139 (1070)
|+|+|+.++|||+|+|.|++.. |.. .++. ...+..+++ +|..+.+.|+||+|..
T Consensus 4 v~l~G~~g~GKTtl~~~~~~~~--~~~~~~~t~~~~~~~~~~~----------~~~~~~~~l~D~~g~~ 60 (180)
T cd04137 4 IAVLGSRSVGKSSLTVQFVEGH--FVESYYPTIENTFSKIIRY----------KGQDYHLEIVDTAGQD 60 (180)
T ss_pred EEEECCCCCCHHHHHHHHHhCC--CccccCcchhhhEEEEEEE----------CCEEEEEEEEECCChH
Confidence 6799999999999999999765 421 1221 112333322 2445678899999964
No 276
>PTZ00258 GTP-binding protein; Provisional
Probab=95.53 E-value=0.017 Score=66.66 Aligned_cols=68 Identities=16% Similarity=0.077 Sum_probs=40.7
Q ss_pred CCEEEEEeecCCCCChhHHHHHHhCCCCCcccc----CCCCcccceEEeeccccc---cccCCC---CceeEEEeecccc
Q 001482 69 EPIGVVSVCGRARQGKSFILNQLLGRSSGFQVA----STHRPCTKGLWLWSAPLK---RTALDG---TEYNLLLLDSEGI 138 (1070)
Q Consensus 69 ~~v~vvsv~G~~r~GKS~lln~l~~~~~gF~~~----~~~~~~t~giw~~~~p~~---~~~~~g---~~~~~~llDteG~ 138 (1070)
....-|+|+|.+.+|||||+|.|.+.. -.++ .|..| ..|+..|..+-. ....++ ....+.|+||+|+
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~--~~v~n~pftTi~p-~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGL 95 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQ--VPAENFPFCTIDP-NTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGL 95 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCc--ccccCCCCCcccc-eEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCc
Confidence 344469999999999999999997754 1222 12233 457765542110 000011 1135889999998
Q ss_pred c
Q 001482 139 D 139 (1070)
Q Consensus 139 ~ 139 (1070)
-
T Consensus 96 v 96 (390)
T PTZ00258 96 V 96 (390)
T ss_pred C
Confidence 5
No 277
>CHL00189 infB translation initiation factor 2; Provisional
Probab=95.52 E-value=0.026 Score=70.22 Aligned_cols=97 Identities=16% Similarity=0.292 Sum_probs=55.4
Q ss_pred CEEEEEeecCCCCChhHHHHHHhCCCCCccccCCCCccc--ceEEeeccccccccCCCCceeEEEeecccccccCCCCcc
Q 001482 70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCT--KGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYDQTGTY 147 (1070)
Q Consensus 70 ~v~vvsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t--~giw~~~~p~~~~~~~g~~~~~~llDteG~~~~~~~~~~ 147 (1070)
+..+|+|+|....|||+|+|.|.+.. |..+. ....| .|.+.+ ++. .+|..+.+.|+||||...+.
T Consensus 243 r~p~V~IvGhvdvGKTSLld~L~~~~--~~~~e-~~GiTq~i~~~~v--~~~---~~~~~~kItfiDTPGhe~F~----- 309 (742)
T CHL00189 243 RPPIVTILGHVDHGKTTLLDKIRKTQ--IAQKE-AGGITQKIGAYEV--EFE---YKDENQKIVFLDTPGHEAFS----- 309 (742)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcc--Ccccc-CCccccccceEEE--EEE---ecCCceEEEEEECCcHHHHH-----
Confidence 44589999999999999999998765 43221 11123 233322 211 12345789999999964321
Q ss_pred hhHHHHHHHhhhhheeecCCCCCCHHHhhhhH
Q 001482 148 STQIFSLAVLLSSMFIYNQMGGIDESAIDRLS 179 (1070)
Q Consensus 148 d~~ifaL~~llSS~~IyN~~~~i~~~~l~~L~ 179 (1070)
.++..++...=.-++||.....+....++.+.
T Consensus 310 ~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~ 341 (742)
T CHL00189 310 SMRSRGANVTDIAILIIAADDGVKPQTIEAIN 341 (742)
T ss_pred HHHHHHHHHCCEEEEEEECcCCCChhhHHHHH
Confidence 12232333322345677665555555555443
No 278
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=95.50 E-value=0.032 Score=58.63 Aligned_cols=99 Identities=13% Similarity=0.177 Sum_probs=52.9
Q ss_pred EEEEeecCCCCChhHHHHHHhCCC--------CCccccC-CCCcccceEEeeccccccccCCCCceeEEEeecccccccC
Q 001482 72 GVVSVCGRARQGKSFILNQLLGRS--------SGFQVAS-THRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYD 142 (1070)
Q Consensus 72 ~vvsv~G~~r~GKS~lln~l~~~~--------~gF~~~~-~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~~~~ 142 (1070)
.-|+|+|...+|||+|++.|++.. .++.+.. ......+|+=+-....... .....+.|+||||...+
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~---~~~~~i~~iDtPG~~~~- 78 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYE---TANRHYAHVDCPGHADY- 78 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEec---CCCeEEEEEECcCHHHH-
Confidence 459999999999999999998642 1111100 0111123333332222111 12356889999996421
Q ss_pred CCCcchhHHHHHHHhhhhheeecCCCCCCHHHhhhh
Q 001482 143 QTGTYSTQIFSLAVLLSSMFIYNQMGGIDESAIDRL 178 (1070)
Q Consensus 143 ~~~~~d~~ifaL~~llSS~~IyN~~~~i~~~~l~~L 178 (1070)
....+.+++..=.-++|......+.......+
T Consensus 79 ----~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~ 110 (195)
T cd01884 79 ----IKNMITGAAQMDGAILVVSATDGPMPQTREHL 110 (195)
T ss_pred ----HHHHHHHhhhCCEEEEEEECCCCCcHHHHHHH
Confidence 12345555553344566665555555444433
No 279
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=95.49 E-value=0.026 Score=57.63 Aligned_cols=55 Identities=25% Similarity=0.337 Sum_probs=35.4
Q ss_pred EEEEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeeccccc
Q 001482 72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (1070)
Q Consensus 72 ~vvsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~ 139 (1070)
.-|+|+|+.++|||+|+|.|.|.. |.. ...|.|+-.- .+ ..+| ..+.++||+|..
T Consensus 15 ~~v~i~G~~g~GKStLl~~l~~~~--~~~----~~~t~g~~~~--~i---~~~~--~~~~~~D~~G~~ 69 (173)
T cd04155 15 PRILILGLDNAGKTTILKQLASED--ISH----ITPTQGFNIK--TV---QSDG--FKLNVWDIGGQR 69 (173)
T ss_pred cEEEEEccCCCCHHHHHHHHhcCC--Ccc----cCCCCCcceE--EE---EECC--EEEEEEECCCCH
Confidence 459999999999999999999864 321 1224452111 00 0123 567889999953
No 280
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=95.47 E-value=0.021 Score=57.90 Aligned_cols=57 Identities=26% Similarity=0.485 Sum_probs=36.0
Q ss_pred EEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeeccccc
Q 001482 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (1070)
Q Consensus 74 vsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~ 139 (1070)
|.|+|+.++|||+|++.+++.. |. + ...+.+..++.+ ++ ..+|..+.+-++||+|..
T Consensus 2 i~vvG~~~~GKtsli~~~~~~~--~~-~-~~~~t~~~~~~~--~~---~~~~~~~~~~i~D~~g~~ 58 (165)
T cd04146 2 IAVLGASGVGKSALVVRFLTKR--FI-G-EYDPNLESLYSR--QV---TIDGEQVSLEILDTAGQQ 58 (165)
T ss_pred EEEECCCCCcHHHHHHHHHhCc--cc-c-ccCCChHHhceE--EE---EECCEEEEEEEEECCCCc
Confidence 7899999999999999998654 42 1 111222112111 11 124556778899999964
No 281
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=95.47 E-value=0.02 Score=68.10 Aligned_cols=58 Identities=36% Similarity=0.496 Sum_probs=36.9
Q ss_pred EEEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeeccccc
Q 001482 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (1070)
Q Consensus 73 vvsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~ 139 (1070)
.|+|+|.+++|||+|+|.|++....+ +++ ....|..+..... ..+| ..+.|+||+|+.
T Consensus 217 kV~ivG~~nvGKSSLln~L~~~~~a~-v~~-~~gtT~d~~~~~i-----~~~g--~~i~l~DT~G~~ 274 (449)
T PRK05291 217 KVVIAGRPNVGKSSLLNALLGEERAI-VTD-IAGTTRDVIEEHI-----NLDG--IPLRLIDTAGIR 274 (449)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCcc-cCC-CCCcccccEEEEE-----EECC--eEEEEEeCCCCC
Confidence 68999999999999999999875222 111 2223433322111 1123 467899999975
No 282
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=95.43 E-value=0.041 Score=58.99 Aligned_cols=95 Identities=18% Similarity=0.278 Sum_probs=52.4
Q ss_pred EEeecCCCCChhHHHHHHhCCCCCccccC-C--------CCcccceEEeeccccccc-------cCCCCceeEEEeeccc
Q 001482 74 VSVCGRARQGKSFILNQLLGRSSGFQVAS-T--------HRPCTKGLWLWSAPLKRT-------ALDGTEYNLLLLDSEG 137 (1070)
Q Consensus 74 vsv~G~~r~GKS~lln~l~~~~~gF~~~~-~--------~~~~t~giw~~~~p~~~~-------~~~g~~~~~~llDteG 137 (1070)
|+|+|...+|||+|++.|+.....+.... + ..-..+||=|-+.++... ..+|..+.+.|+||+|
T Consensus 3 vaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTPG 82 (222)
T cd01885 3 ICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSPG 82 (222)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCCC
Confidence 78999999999999999986543221110 0 001123333332222110 1245678899999999
Q ss_pred ccccCCCCcchhHHHHHHHhhhhheeecCCCCCCHH
Q 001482 138 IDAYDQTGTYSTQIFSLAVLLSSMFIYNQMGGIDES 173 (1070)
Q Consensus 138 ~~~~~~~~~~d~~ifaL~~llSS~~IyN~~~~i~~~ 173 (1070)
...+. .....++...=.-++||.....+...
T Consensus 83 ~~~f~-----~~~~~~l~~aD~~ilVvD~~~g~~~~ 113 (222)
T cd01885 83 HVDFS-----SEVTAALRLCDGALVVVDAVEGVCVQ 113 (222)
T ss_pred ccccH-----HHHHHHHHhcCeeEEEEECCCCCCHH
Confidence 64321 23344444433446777766555443
No 283
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=95.42 E-value=0.028 Score=57.76 Aligned_cols=56 Identities=23% Similarity=0.166 Sum_probs=36.6
Q ss_pred EEEEEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeeccccc
Q 001482 71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (1070)
Q Consensus 71 v~vvsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~ 139 (1070)
..-|.++|+.++|||+|++.|.+.. |.- . ..|.|.-+.. +. ...+.+.|+||+|..
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~--~~~---~-~~t~~~~~~~--~~-----~~~~~~~l~D~~G~~ 70 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGE--VVH---T-SPTIGSNVEE--IV-----YKNIRFLMWDIGGQE 70 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCC--CCC---c-CCccccceEE--EE-----ECCeEEEEEECCCCH
Confidence 4567899999999999999998754 321 1 2243332211 11 124679999999964
No 284
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=95.41 E-value=0.022 Score=64.93 Aligned_cols=57 Identities=19% Similarity=0.237 Sum_probs=39.0
Q ss_pred EEEEEeecCCCCChhHHHHHHhCCCCCccccC---CCCcccceEEeeccccccccCCCCceeEEEeeccccc
Q 001482 71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVAS---THRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (1070)
Q Consensus 71 v~vvsv~G~~r~GKS~lln~l~~~~~gF~~~~---~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~ 139 (1070)
++=|+++|.+.+|||+|||.|.+.. ..+++ ++...+.|++.|. + ...+++.||+|+.
T Consensus 158 ~adVglVG~PNaGKSTLln~ls~a~--~~va~ypfTT~~p~~G~v~~~--------~--~~~~~i~D~PGli 217 (335)
T PRK12299 158 LADVGLVGLPNAGKSTLISAVSAAK--PKIADYPFTTLHPNLGVVRVD--------D--YKSFVIADIPGLI 217 (335)
T ss_pred cCCEEEEcCCCCCHHHHHHHHHcCC--CccCCCCCceeCceEEEEEeC--------C--CcEEEEEeCCCcc
Confidence 5669999999999999999998753 22221 1222345666552 1 2458899999974
No 285
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=95.41 E-value=0.024 Score=57.44 Aligned_cols=58 Identities=19% Similarity=0.366 Sum_probs=39.4
Q ss_pred EEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeeccccc
Q 001482 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (1070)
Q Consensus 74 vsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~ 139 (1070)
|.|+|+.++|||+|++.+++.. |...+ ..|.|+-....++. .+|..+.+-++||.|..
T Consensus 3 i~vvG~~~~GKTsli~~~~~~~--~~~~~---~~t~~~~~~~~~~~---~~~~~~~l~i~D~~g~~ 60 (161)
T cd04117 3 LLLIGDSGVGKTCLLCRFTDNE--FHSSH---ISTIGVDFKMKTIE---VDGIKVRIQIWDTAGQE 60 (161)
T ss_pred EEEECcCCCCHHHHHHHHhcCC--CCCCC---CCceeeEEEEEEEE---ECCEEEEEEEEeCCCcH
Confidence 7899999999999999999765 64322 33566433222222 23556778899999953
No 286
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=95.40 E-value=0.025 Score=57.84 Aligned_cols=59 Identities=24% Similarity=0.383 Sum_probs=38.2
Q ss_pred EEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeeccccccc
Q 001482 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAY 141 (1070)
Q Consensus 74 vsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~~~ 141 (1070)
|.|+|+.++|||+|+|.+.+.. |.-. ..|.+...|.- .+. .++..+.+-++||+|...+
T Consensus 3 i~i~G~~~~GKTsl~~~~~~~~--~~~~--~~~t~~~~~~~--~~~---~~~~~~~~~i~Dt~G~~~~ 61 (174)
T cd04135 3 CVVVGDGAVGKTCLLMSYANDA--FPEE--YVPTVFDHYAV--SVT---VGGKQYLLGLYDTAGQEDY 61 (174)
T ss_pred EEEECCCCCCHHHHHHHHHhCC--CCCC--CCCceeeeeEE--EEE---ECCEEEEEEEEeCCCcccc
Confidence 6799999999999999998765 5321 12222233322 221 2355567778999996543
No 287
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=95.40 E-value=0.02 Score=58.63 Aligned_cols=57 Identities=25% Similarity=0.282 Sum_probs=37.3
Q ss_pred EEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeeccccc
Q 001482 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (1070)
Q Consensus 74 vsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~ 139 (1070)
|.|+|+.++|||+|+|.+++.. |.... .+ |.+--+.. .+ ..+|..+.+.++||+|..
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~--~~~~~--~~-~~~~~~~~-~~---~~~~~~~~~~i~Dt~G~~ 57 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNA--FPEDY--VP-TVFENYSA-DV---EVDGKPVELGLWDTAGQE 57 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCC--CCCCC--CC-cEEeeeeE-EE---EECCEEEEEEEEECCCCc
Confidence 5799999999999999999865 63321 12 22221111 11 124666789999999964
No 288
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=95.40 E-value=0.03 Score=56.94 Aligned_cols=63 Identities=17% Similarity=0.298 Sum_probs=39.9
Q ss_pred CCEEEEEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeeccccc
Q 001482 69 EPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (1070)
Q Consensus 69 ~~v~vvsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~ 139 (1070)
.+..-|.|+|+.++|||+|++.|.+.. |..+. ..|.|+-.....+ ..+|..+.+.++||+|..
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~~~--~~~~~---~~t~~~~~~~~~~---~~~~~~~~~~~~D~~g~~ 67 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQGL--FPPGQ---GATIGVDFMIKTV---EIKGEKIKLQIWDTAGQE 67 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCC--CCCCC---CCceeeEEEEEEE---EECCEEEEEEEEECCCcH
Confidence 356789999999999999999998653 42221 2233321111111 123555778899999953
No 289
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=95.40 E-value=0.029 Score=56.40 Aligned_cols=54 Identities=24% Similarity=0.216 Sum_probs=36.0
Q ss_pred EEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeeccccc
Q 001482 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (1070)
Q Consensus 74 vsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~ 139 (1070)
|.|+|+.++|||+|+|.|.+.. |.- . ..|.|+-... +. .+..+.+.++||+|..
T Consensus 2 i~i~G~~~~GKTsl~~~~~~~~--~~~---~-~~t~~~~~~~--~~----~~~~~~l~i~D~~G~~ 55 (160)
T cd04156 2 VLLLGLDSAGKSTLLYKLKHAE--LVT---T-IPTVGFNVEM--LQ----LEKHLSLTVWDVGGQE 55 (160)
T ss_pred EEEEcCCCCCHHHHHHHHhcCC--ccc---c-cCccCcceEE--EE----eCCceEEEEEECCCCH
Confidence 6789999999999999999876 421 1 2344432211 11 1234789999999964
No 290
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=95.38 E-value=0.019 Score=58.32 Aligned_cols=59 Identities=24% Similarity=0.264 Sum_probs=35.0
Q ss_pred EEeecCCCCChhHHHHHHhCCCCCcc-ccCCCCcccceEEeeccccccccCCCCceeEEEeeccccc
Q 001482 74 VSVCGRARQGKSFILNQLLGRSSGFQ-VASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (1070)
Q Consensus 74 vsv~G~~r~GKS~lln~l~~~~~gF~-~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~ 139 (1070)
|.|+|+.++|||+|+|+|.+.....+ .....-..|.|+-.....+ ....+.|+||+|..
T Consensus 2 i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~-------~~~~~~l~Dt~G~~ 61 (167)
T cd04160 2 VLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEV-------GNARLKFWDLGGQE 61 (167)
T ss_pred EEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEE-------CCEEEEEEECCCCh
Confidence 67899999999999999986431100 0011112233433322111 13678999999964
No 291
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=95.37 E-value=0.027 Score=62.08 Aligned_cols=63 Identities=19% Similarity=0.265 Sum_probs=39.2
Q ss_pred EEeecCCCCChhHHHHHHhCCCCCcccc----CCCCcccceEEeeccccc---cccCCCC---ceeEEEeeccccc
Q 001482 74 VSVCGRARQGKSFILNQLLGRSSGFQVA----STHRPCTKGLWLWSAPLK---RTALDGT---EYNLLLLDSEGID 139 (1070)
Q Consensus 74 vsv~G~~r~GKS~lln~l~~~~~gF~~~----~~~~~~t~giw~~~~p~~---~~~~~g~---~~~~~llDteG~~ 139 (1070)
|+|+|.+.+|||||+|.|.|... .++ .|..| ..|++.|..+-. ....++. ...+.|+|++|+-
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~--~~~n~pftTi~p-~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~ 73 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGA--EAANYPFCTIEP-NVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLV 73 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCC--ccccccccchhc-eeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcC
Confidence 68999999999999999998752 222 22233 357776643210 0000111 1248899999985
No 292
>PRK03003 GTP-binding protein Der; Reviewed
Probab=95.34 E-value=0.064 Score=64.50 Aligned_cols=56 Identities=27% Similarity=0.346 Sum_probs=36.6
Q ss_pred EEEEEeecCCCCChhHHHHHHhCCCCCccccCCCCcccc----eEEeeccccccccCCCCceeEEEeeccccc
Q 001482 71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTK----GLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (1070)
Q Consensus 71 v~vvsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~----giw~~~~p~~~~~~~g~~~~~~llDteG~~ 139 (1070)
..-|+|+|.+++|||+|+|.|+|.. +...+.....|. +.|.| +| ..+.|+||+|+.
T Consensus 211 ~~kI~iiG~~nvGKSSLin~l~~~~--~~~~s~~~gtT~d~~~~~~~~---------~~--~~~~l~DTaG~~ 270 (472)
T PRK03003 211 PRRVALVGKPNVGKSSLLNKLAGEE--RSVVDDVAGTTVDPVDSLIEL---------GG--KTWRFVDTAGLR 270 (472)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCC--cccccCCCCccCCcceEEEEE---------CC--EEEEEEECCCcc
Confidence 4578999999999999999999876 221111222232 22222 23 346789999974
No 293
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=95.34 E-value=0.16 Score=60.77 Aligned_cols=26 Identities=31% Similarity=0.446 Sum_probs=22.6
Q ss_pred CCCEEEEEeecCCCCChhHHHHHHhC
Q 001482 68 KEPIGVVSVCGRARQGKSFILNQLLG 93 (1070)
Q Consensus 68 ~~~v~vvsv~G~~r~GKS~lln~l~~ 93 (1070)
.....-|.|.|...+|||++.|.++.
T Consensus 106 ~r~~mKV~ifGrts~GKSt~iNAmL~ 131 (749)
T KOG0448|consen 106 ARRHMKVAIFGRTSAGKSTVINAMLH 131 (749)
T ss_pred hhcccEEEEeCCCCCcHHHHHHHHHH
Confidence 35667899999999999999999983
No 294
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=95.33 E-value=0.029 Score=57.12 Aligned_cols=54 Identities=15% Similarity=0.147 Sum_probs=35.3
Q ss_pred EEeecCCCCChhHHHHHHhCCCCCcccc-C-CCCcccceEEeeccccccccCCCCceeEEEeeccccc
Q 001482 74 VSVCGRARQGKSFILNQLLGRSSGFQVA-S-THRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (1070)
Q Consensus 74 vsv~G~~r~GKS~lln~l~~~~~gF~~~-~-~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~ 139 (1070)
|.|+|..++|||+|+|+|.+.. |.-. + +....|.++. .++..+.+.++||+|..
T Consensus 3 v~ivG~~~vGKTsl~~~l~~~~--~~~~~~~~~~~~~~~~~----------~~~~~~~~~i~Dt~G~~ 58 (166)
T cd01893 3 IVLIGDEGVGKSSLIMSLVSEE--FPENVPRVLPEITIPAD----------VTPERVPTTIVDTSSRP 58 (166)
T ss_pred EEEECCCCCCHHHHHHHHHhCc--CCccCCCcccceEeeee----------ecCCeEEEEEEeCCCch
Confidence 6789999999999999998765 5211 1 1111121111 13456789999999964
No 295
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=95.32 E-value=1.1 Score=42.77 Aligned_cols=95 Identities=22% Similarity=0.325 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001482 565 RINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQ 644 (1070)
Q Consensus 565 ~i~~L~~~~~~Le~~~~~l~~eLe~~~~el~e~k~k~e~~~~el~~~~~~l~~Ei~~Lk~~l~~le~~l~~l~~e~q~lq 644 (1070)
.|..+..++..+..++..+..+-+.+..++-.+-...+.... .......+..++.+++.++..+-.-+....+++..|+
T Consensus 24 ~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~-~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~ 102 (120)
T PF12325_consen 24 QLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRA-LKKEVEELEQELEELQQRYQTLLELLGEKSEEVEELR 102 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 333444444444444444444444444444444433333222 2222334566666666666666555555567777777
Q ss_pred HHHHHHHHHHHHHHHH
Q 001482 645 EEVEEWKRKYGVAVRE 660 (1070)
Q Consensus 645 ~el~e~k~~le~e~~e 660 (1070)
.++.++|.-|...+..
T Consensus 103 ~Dv~DlK~myr~Qi~~ 118 (120)
T PF12325_consen 103 ADVQDLKEMYREQIDQ 118 (120)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777777777666654
No 296
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=95.31 E-value=0.028 Score=58.34 Aligned_cols=58 Identities=21% Similarity=0.180 Sum_probs=38.7
Q ss_pred EEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeeccccc
Q 001482 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (1070)
Q Consensus 74 vsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~ 139 (1070)
|.|+|+.++|||+|+|.|++.. |... ...|.|.-+... + ..++|..+.+.+.||+|..
T Consensus 3 i~vvG~~~vGKTsli~~l~~~~--~~~~---~~~t~~~~~~~~-i--~~~~~~~~~l~i~Dt~G~~ 60 (187)
T cd04132 3 IVVVGDGGCGKTCLLIVYSQGK--FPEE---YVPTVFENYVTN-I--QGPNGKIIELALWDTAGQE 60 (187)
T ss_pred EEEECCCCCCHHHHHHHHHhCc--CCCC---CCCeeeeeeEEE-E--EecCCcEEEEEEEECCCch
Confidence 7899999999999999999765 6321 122434322211 1 1233667889999999954
No 297
>PLN03110 Rab GTPase; Provisional
Probab=95.29 E-value=0.027 Score=60.22 Aligned_cols=60 Identities=22% Similarity=0.309 Sum_probs=42.7
Q ss_pred EEEEEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeecccc
Q 001482 71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI 138 (1070)
Q Consensus 71 v~vvsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~ 138 (1070)
..=|.|+|+.++|||+|++.|++.. |... ...|.|+-.+...+.. +|..+.+.|+||.|.
T Consensus 12 ~~Ki~ivG~~~vGKStLi~~l~~~~--~~~~---~~~t~g~~~~~~~v~~---~~~~~~l~l~Dt~G~ 71 (216)
T PLN03110 12 LFKIVLIGDSGVGKSNILSRFTRNE--FCLE---SKSTIGVEFATRTLQV---EGKTVKAQIWDTAGQ 71 (216)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC--CCCC---CCCceeEEEEEEEEEE---CCEEEEEEEEECCCc
Confidence 4458999999999999999999865 6432 2346676554443322 355678889999994
No 298
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=95.27 E-value=0.029 Score=56.18 Aligned_cols=56 Identities=23% Similarity=0.267 Sum_probs=35.1
Q ss_pred eecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeeccccccc
Q 001482 76 VCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAY 141 (1070)
Q Consensus 76 v~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~~~ 141 (1070)
|+|..++|||+|+|.|.|.. |.+++. ..+|....... +. .+| ..+.|+||+|+...
T Consensus 1 l~G~~~~GKssl~~~~~~~~--~~~~~~-~~~t~~~~~~~--~~---~~~--~~~~liDtpG~~~~ 56 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGAR--QKVGNW-PGVTVEKKEGR--FK---LGG--KEIEIVDLPGTYSL 56 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCc--ccccCC-CCcccccceEE--Ee---eCC--eEEEEEECCCcccc
Confidence 68999999999999999875 443321 12333332211 10 123 46889999998654
No 299
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=95.26 E-value=0.03 Score=56.55 Aligned_cols=57 Identities=25% Similarity=0.374 Sum_probs=37.2
Q ss_pred EEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeeccccc
Q 001482 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (1070)
Q Consensus 74 vsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~ 139 (1070)
|.|+|..++|||+|++.+++.. |.- ...+++....... + ..+|..+.+-|+||+|..
T Consensus 4 i~i~G~~~vGKTsl~~~~~~~~--~~~--~~~~t~~~~~~~~--~---~~~~~~~~l~i~Dt~G~~ 60 (163)
T cd04176 4 VVVLGSGGVGKSALTVQFVSGT--FIE--KYDPTIEDFYRKE--I---EVDSSPSVLEILDTAGTE 60 (163)
T ss_pred EEEECCCCCCHHHHHHHHHcCC--CCC--CCCCchhheEEEE--E---EECCEEEEEEEEECCCcc
Confidence 7899999999999999998764 532 2223222233221 1 124556678889999954
No 300
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=95.23 E-value=5.6 Score=51.05 Aligned_cols=16 Identities=31% Similarity=0.393 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 001482 523 IEDNMKLLKKQLEDSE 538 (1070)
Q Consensus 523 ~~~~l~~L~k~le~~e 538 (1070)
+..++..+++++++.+
T Consensus 199 L~~ql~~l~~~l~~aE 214 (754)
T TIGR01005 199 LAPEIADLSKQSRDAE 214 (754)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444444
No 301
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=95.23 E-value=0.029 Score=64.73 Aligned_cols=57 Identities=33% Similarity=0.507 Sum_probs=38.1
Q ss_pred EEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeeccccc
Q 001482 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (1070)
Q Consensus 74 vsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~ 139 (1070)
|+|+|++..|||.|||.|++..... -...-.+|+.+-=-. + ..+| +.|.++||-|+.
T Consensus 220 vvIiG~PNvGKSSLLNaL~~~d~AI--VTdI~GTTRDviee~--i---~i~G--~pv~l~DTAGiR 276 (454)
T COG0486 220 VVIIGRPNVGKSSLLNALLGRDRAI--VTDIAGTTRDVIEED--I---NLNG--IPVRLVDTAGIR 276 (454)
T ss_pred EEEECCCCCcHHHHHHHHhcCCceE--ecCCCCCccceEEEE--E---EECC--EEEEEEecCCcc
Confidence 6799999999999999999986322 222223454442111 1 1234 789999999986
No 302
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=95.17 E-value=0.033 Score=57.08 Aligned_cols=58 Identities=24% Similarity=0.373 Sum_probs=40.5
Q ss_pred EEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeeccccc
Q 001482 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (1070)
Q Consensus 74 vsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~ 139 (1070)
|.|+|..++|||.|+|++++.. |.- .-..|.|.-....-+ ..+|..+.+-+.||+|..
T Consensus 3 i~ivG~~~vGKTsli~~~~~~~--f~~---~~~~t~~~~~~~~~~---~~~~~~~~l~i~Dt~G~~ 60 (170)
T cd04108 3 VIVVGDLSVGKTCLINRFCKDV--FDK---NYKATIGVDFEMERF---EILGVPFSLQLWDTAGQE 60 (170)
T ss_pred EEEECCCCCCHHHHHHHHhcCC--CCC---CCCCceeeEEEEEEE---EECCEEEEEEEEeCCChH
Confidence 6799999999999999999875 632 123465554432222 124666789999999954
No 303
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=95.16 E-value=0.039 Score=55.49 Aligned_cols=55 Identities=25% Similarity=0.261 Sum_probs=34.6
Q ss_pred EEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeeccccc
Q 001482 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (1070)
Q Consensus 74 vsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~ 139 (1070)
|.|+|+.++|||+|+|.|.+.. |.... -..|.|+-+.. + .+..+.+.++||+|..
T Consensus 2 i~~vG~~~~GKTsl~~~l~~~~--~~~~~--~~~t~g~~~~~--~-----~~~~~~~~l~Dt~G~~ 56 (162)
T cd04157 2 ILVVGLDNSGKTTIINQLKPEN--AQSQI--IVPTVGFNVES--F-----EKGNLSFTAFDMSGQG 56 (162)
T ss_pred EEEECCCCCCHHHHHHHHcccC--CCcce--ecCccccceEE--E-----EECCEEEEEEECCCCH
Confidence 6789999999999999999753 21111 12244432111 0 1124678899999953
No 304
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=95.16 E-value=0.031 Score=60.00 Aligned_cols=57 Identities=19% Similarity=0.291 Sum_probs=37.0
Q ss_pred EEeecCCCCChhHHHHHHhCCCCCccccCCCCcccce--EEeeccccccccCCCCceeEEEeeccccc
Q 001482 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKG--LWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (1070)
Q Consensus 74 vsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~g--iw~~~~p~~~~~~~g~~~~~~llDteG~~ 139 (1070)
|.|+|+.++|||+|++.|++.. |.... -..|.| ....... .+|..+.+.++||+|..
T Consensus 3 I~lvG~~gvGKTsLi~~~~~~~--~~~~~--~~~t~~~~~~~~~i~-----~~~~~~~l~i~Dt~G~~ 61 (221)
T cd04148 3 VVMLGSPGVGKSSLASQFTSGE--YDDHA--YDASGDDDTYERTVS-----VDGEESTLVVIDHWEQE 61 (221)
T ss_pred EEEECCCCCcHHHHHHHHhcCC--cCccC--cCCCccccceEEEEE-----ECCEEEEEEEEeCCCcc
Confidence 7899999999999999998654 43111 112222 2222211 24556789999999964
No 305
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=95.16 E-value=0.05 Score=55.37 Aligned_cols=54 Identities=20% Similarity=0.183 Sum_probs=37.1
Q ss_pred EEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeeccccc
Q 001482 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (1070)
Q Consensus 74 vsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~ 139 (1070)
|.|+|+.++|||+|++.|.+.. |.-. ...|.|..... .++..+.+.++||+|..
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~--~~~~---~~pt~g~~~~~-------i~~~~~~l~i~Dt~G~~ 55 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSER--SLES---VVPTTGFNSVA-------IPTQDAIMELLEIGGSQ 55 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCC--Cccc---ccccCCcceEE-------EeeCCeEEEEEECCCCc
Confidence 6799999999999999999764 4321 12355653221 12345789999999953
No 306
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=95.13 E-value=0.031 Score=56.58 Aligned_cols=58 Identities=24% Similarity=0.347 Sum_probs=36.4
Q ss_pred EEEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeeccccc
Q 001482 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (1070)
Q Consensus 73 vvsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~ 139 (1070)
-|.|+|..++|||+|+|.++... |.- ...|++...+.. .+. .+|..+.+-++||+|..
T Consensus 3 ki~~~G~~~~GKTsli~~~~~~~--~~~--~~~~t~~~~~~~--~~~---~~~~~~~l~i~Dt~G~~ 60 (164)
T cd04175 3 KLVVLGSGGVGKSALTVQFVQGI--FVE--KYDPTIEDSYRK--QVE---VDGQQCMLEILDTAGTE 60 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC--CCc--ccCCcchheEEE--EEE---ECCEEEEEEEEECCCcc
Confidence 37899999999999999998543 421 122333222211 111 23556778899999964
No 307
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=95.13 E-value=0.051 Score=57.96 Aligned_cols=22 Identities=27% Similarity=0.628 Sum_probs=19.7
Q ss_pred EEeecCCCCChhHHHHHHhCCC
Q 001482 74 VSVCGRARQGKSFILNQLLGRS 95 (1070)
Q Consensus 74 vsv~G~~r~GKS~lln~l~~~~ 95 (1070)
|+|+|..++|||+|++.|++..
T Consensus 3 v~iiG~~~~GKTtL~~~l~~~~ 24 (213)
T cd04167 3 VAIAGHLHHGKTSLLDMLIEQT 24 (213)
T ss_pred EEEEcCCCCCHHHHHHHHHHhc
Confidence 7899999999999999998654
No 308
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=95.06 E-value=8.6 Score=44.28 Aligned_cols=14 Identities=43% Similarity=0.491 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHH
Q 001482 873 EARVEEREKEIESL 886 (1070)
Q Consensus 873 e~~v~ele~eie~L 886 (1070)
.++-+..+.++=+|
T Consensus 484 krEKe~~EqefLsl 497 (527)
T PF15066_consen 484 KREKETREQEFLSL 497 (527)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333344444444
No 309
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=95.05 E-value=0.099 Score=66.16 Aligned_cols=56 Identities=30% Similarity=0.443 Sum_probs=37.0
Q ss_pred EEEEEeecCCCCChhHHHHHHhCCCCCccccCCCCccc----ceEEeeccccccccCCCCceeEEEeeccccc
Q 001482 71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCT----KGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (1070)
Q Consensus 71 v~vvsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t----~giw~~~~p~~~~~~~g~~~~~~llDteG~~ 139 (1070)
..-|+|+|.+++|||+|+|.|++...++ .+...++| .+.|.| +|. .+.|+||+|+.
T Consensus 450 ~~kI~ivG~~nvGKSSLin~l~~~~~~~--v~~~~gtT~d~~~~~~~~---------~~~--~~~liDTaG~~ 509 (712)
T PRK09518 450 LRRVALVGRPNVGKSSLLNQLTHEERAV--VNDLAGTTRDPVDEIVEI---------DGE--DWLFIDTAGIK 509 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCccccc--cCCCCCCCcCcceeEEEE---------CCC--EEEEEECCCcc
Confidence 3578999999999999999999876322 11112223 233433 233 46689999975
No 310
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=95.05 E-value=0.033 Score=59.48 Aligned_cols=61 Identities=15% Similarity=0.131 Sum_probs=41.8
Q ss_pred EEEEEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeeccccc
Q 001482 71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (1070)
Q Consensus 71 v~vvsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~ 139 (1070)
..=|+|+|+.++|||+|++.++... |.. ....|.|+-++...+. .++..+.+-+.||.|..
T Consensus 9 ~~kv~liG~~g~GKTtLi~~~~~~~--~~~---~~~~t~~~~~~~~~~~---~~~~~i~i~~~Dt~g~~ 69 (215)
T PTZ00132 9 EFKLILVGDGGVGKTTFVKRHLTGE--FEK---KYIPTLGVEVHPLKFY---TNCGPICFNVWDTAGQE 69 (215)
T ss_pred CceEEEECCCCCCHHHHHHHHHhCC--CCC---CCCCccceEEEEEEEE---ECCeEEEEEEEECCCch
Confidence 3458999999999999998665433 422 2235777766654442 24556889999999853
No 311
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=95.02 E-value=5.9 Score=46.79 Aligned_cols=7 Identities=14% Similarity=0.359 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 001482 878 EREKEIE 884 (1070)
Q Consensus 878 ele~eie 884 (1070)
..+.++.
T Consensus 250 ~~~~~l~ 256 (423)
T TIGR01843 250 EAQARLA 256 (423)
T ss_pred HHHHHHH
Confidence 3333333
No 312
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=95.01 E-value=0.1 Score=55.14 Aligned_cols=58 Identities=19% Similarity=0.307 Sum_probs=40.9
Q ss_pred EEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeeccccc
Q 001482 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (1070)
Q Consensus 74 vsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~ 139 (1070)
|.|+|..++|||.|++++.... |.- ..+.|.|+-+....+. .+|..+.+-+.||.|..
T Consensus 3 vvvlG~~gVGKTSli~r~~~~~--f~~---~~~~Ti~~~~~~~~i~---~~~~~v~l~iwDtaGqe 60 (202)
T cd04120 3 VIIIGSRGVGKTSLMRRFTDDT--FCE---ACKSGVGVDFKIKTVE---LRGKKIRLQIWDTAGQE 60 (202)
T ss_pred EEEECcCCCCHHHHHHHHHhCC--CCC---cCCCcceeEEEEEEEE---ECCEEEEEEEEeCCCch
Confidence 6799999999999999998765 632 2234666544433332 24667889999999953
No 313
>PRK13796 GTPase YqeH; Provisional
Probab=95.00 E-value=0.029 Score=64.89 Aligned_cols=55 Identities=29% Similarity=0.299 Sum_probs=35.4
Q ss_pred EEEeecCCCCChhHHHHHHhCCCCCc----cccCCCCcccceE-EeeccccccccCCCCceeEEEeeccccc
Q 001482 73 VVSVCGRARQGKSFILNQLLGRSSGF----QVASTHRPCTKGL-WLWSAPLKRTALDGTEYNLLLLDSEGID 139 (1070)
Q Consensus 73 vvsv~G~~r~GKS~lln~l~~~~~gF----~~~~~~~~~t~gi-w~~~~p~~~~~~~g~~~~~~llDteG~~ 139 (1070)
-|.|+|.++.|||+|+|.|++...|- .+++.. .+|.++ |+. + .+| ..|+||||+.
T Consensus 162 ~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~p-GTT~~~~~~~---l----~~~----~~l~DTPGi~ 221 (365)
T PRK13796 162 DVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFP-GTTLDKIEIP---L----DDG----SFLYDTPGII 221 (365)
T ss_pred eEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCC-CccceeEEEE---c----CCC----cEEEECCCcc
Confidence 46789999999999999999754322 233222 245553 322 1 122 4789999985
No 314
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=94.99 E-value=0.038 Score=62.50 Aligned_cols=63 Identities=25% Similarity=0.393 Sum_probs=40.7
Q ss_pred EEeecCCCCChhHHHHHHhCCCCCccccC----CCCcccceEEeecc--ccccc----c------CCC-CceeEEEeecc
Q 001482 74 VSVCGRARQGKSFILNQLLGRSSGFQVAS----THRPCTKGLWLWSA--PLKRT----A------LDG-TEYNLLLLDSE 136 (1070)
Q Consensus 74 vsv~G~~r~GKS~lln~l~~~~~gF~~~~----~~~~~t~giw~~~~--p~~~~----~------~~g-~~~~~~llDte 136 (1070)
|+|+|.+++|||+|+|.|.+.. +.+++ |..| +.|+-.+.. |..+. . .+| ..+.+-|+||+
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~--~~~~~~pftT~~p-~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~a 77 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLAD--VEIANYPFTTIDP-NVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVA 77 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCC--CcccCCCCccccc-eeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECC
Confidence 6899999999999999999875 33322 2233 556655432 22110 1 133 33678999999
Q ss_pred ccc
Q 001482 137 GID 139 (1070)
Q Consensus 137 G~~ 139 (1070)
|+-
T Consensus 78 Glv 80 (318)
T cd01899 78 GLV 80 (318)
T ss_pred CCC
Confidence 984
No 315
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=94.99 E-value=0.028 Score=55.44 Aligned_cols=22 Identities=23% Similarity=0.373 Sum_probs=20.4
Q ss_pred EEeecCCCCChhHHHHHHhCCC
Q 001482 74 VSVCGRARQGKSFILNQLLGRS 95 (1070)
Q Consensus 74 vsv~G~~r~GKS~lln~l~~~~ 95 (1070)
|+|+|+.++|||+|+|.|.+..
T Consensus 3 v~liG~~~vGKSsL~~~l~~~~ 24 (142)
T TIGR02528 3 IMFIGSVGCGKTTLTQALQGEE 24 (142)
T ss_pred EEEECCCCCCHHHHHHHHcCCc
Confidence 6899999999999999999875
No 316
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=94.98 E-value=0.074 Score=60.60 Aligned_cols=57 Identities=19% Similarity=0.246 Sum_probs=38.8
Q ss_pred EEEEEeecCCCCChhHHHHHHhCCCCCccccC---CCCcccceEEeeccccccccCCCCceeEEEeeccccc
Q 001482 71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVAS---THRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (1070)
Q Consensus 71 v~vvsv~G~~r~GKS~lln~l~~~~~gF~~~~---~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~ 139 (1070)
++=|+|+|.+.+|||+|+|.|.+.. ..+++ +....+.|+.-+. + ...+.|+||||+.
T Consensus 157 ~adV~lvG~pnaGKSTLl~~lt~~~--~~va~y~fTT~~p~ig~v~~~--------~--~~~~~i~D~PGli 216 (329)
T TIGR02729 157 LADVGLVGLPNAGKSTLISAVSAAK--PKIADYPFTTLVPNLGVVRVD--------D--GRSFVIADIPGLI 216 (329)
T ss_pred cccEEEEcCCCCCHHHHHHHHhcCC--ccccCCCCCccCCEEEEEEeC--------C--ceEEEEEeCCCcc
Confidence 5679999999999999999999754 22221 1222355654331 1 2568899999984
No 317
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=94.98 E-value=0.033 Score=66.25 Aligned_cols=56 Identities=21% Similarity=0.287 Sum_probs=38.7
Q ss_pred CEEEEEeecCCCCChhHHHHHHhCCCCCccccC----CCCcccceEEeeccccccccCCCCceeEEEeeccccc
Q 001482 70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVAS----THRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (1070)
Q Consensus 70 ~v~vvsv~G~~r~GKS~lln~l~~~~~gF~~~~----~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~ 139 (1070)
-++-|+++|.+.+|||+|+|.|.+.. ..+++ |..| ..|++-+. ...++|+||+|+-
T Consensus 158 ~~adV~LVG~PNAGKSTLln~Ls~ak--pkIadypfTTl~P-~lGvv~~~-----------~~~f~laDtPGli 217 (500)
T PRK12296 158 SVADVGLVGFPSAGKSSLISALSAAK--PKIADYPFTTLVP-NLGVVQAG-----------DTRFTVADVPGLI 217 (500)
T ss_pred ccceEEEEEcCCCCHHHHHHHHhcCC--ccccccCcccccc-eEEEEEEC-----------CeEEEEEECCCCc
Confidence 35679999999999999999999764 23322 2222 34554331 2468899999974
No 318
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=94.98 E-value=0.049 Score=54.70 Aligned_cols=53 Identities=21% Similarity=0.172 Sum_probs=35.7
Q ss_pred EEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeeccccc
Q 001482 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (1070)
Q Consensus 74 vsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~ 139 (1070)
|+|+|+.++|||+|+|.|.+.. |.- ...|.|+-.-.-+ ...+.+.++||+|..
T Consensus 2 i~iiG~~~~GKssli~~~~~~~--~~~----~~~t~~~~~~~~~-------~~~~~~~i~D~~G~~ 54 (158)
T cd00878 2 ILILGLDGAGKTTILYKLKLGE--VVT----TIPTIGFNVETVE-------YKNVSFTVWDVGGQD 54 (158)
T ss_pred EEEEcCCCCCHHHHHHHHhcCC--CCC----CCCCcCcceEEEE-------ECCEEEEEEECCCCh
Confidence 6899999999999999999876 321 1234443221111 123678999999954
No 319
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=94.94 E-value=8 Score=43.30 Aligned_cols=49 Identities=20% Similarity=0.382 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001482 831 MAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSKVALLEARVEEREKEIESL 886 (1070)
Q Consensus 831 ~~~ie~l~~~i~~Le~e~~~l~~el~~l~~~~~~~~~~~~~le~~v~ele~eie~L 886 (1070)
..+++.+..++..|+.+...+.++.+.+. ..-..+..++..+..|+.-+
T Consensus 132 V~qLEk~~~q~~qLe~d~qs~lDEkeEl~-------~ERD~yk~K~~RLN~ELn~~ 180 (319)
T PF09789_consen 132 VEQLEKLREQIEQLERDLQSLLDEKEELV-------TERDAYKCKAHRLNHELNYI 180 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555544444433 33334455555556666555
No 320
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=94.92 E-value=7.6 Score=42.88 Aligned_cols=12 Identities=17% Similarity=0.122 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHH
Q 001482 617 SEIEVLKSRSTA 628 (1070)
Q Consensus 617 ~Ei~~Lk~~l~~ 628 (1070)
..|..+...+.+
T Consensus 94 ~~i~~l~~~i~~ 105 (264)
T PF06008_consen 94 QFIQNLQDNIQE 105 (264)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 321
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=94.91 E-value=0.058 Score=63.28 Aligned_cols=57 Identities=21% Similarity=0.225 Sum_probs=39.2
Q ss_pred EEEEEeecCCCCChhHHHHHHhCCCCCccccC---CCCcccceEEeeccccccccCCCCceeEEEeeccccc
Q 001482 71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVAS---THRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (1070)
Q Consensus 71 v~vvsv~G~~r~GKS~lln~l~~~~~gF~~~~---~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~ 139 (1070)
++-|+++|.+.+|||+|||.|.+.. ..+++ ++...+.|++.|. + ...++|.||||+.
T Consensus 158 ~adVglVG~pNaGKSTLLn~Lt~ak--~kIa~ypfTTl~PnlG~v~~~--------~--~~~~~laD~PGli 217 (424)
T PRK12297 158 LADVGLVGFPNVGKSTLLSVVSNAK--PKIANYHFTTLVPNLGVVETD--------D--GRSFVMADIPGLI 217 (424)
T ss_pred cCcEEEEcCCCCCHHHHHHHHHcCC--CccccCCcceeceEEEEEEEe--------C--CceEEEEECCCCc
Confidence 5689999999999999999999765 22222 1111245554442 1 2468999999985
No 322
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=94.90 E-value=0.037 Score=56.76 Aligned_cols=54 Identities=30% Similarity=0.453 Sum_probs=36.2
Q ss_pred EEEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeeccccc
Q 001482 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (1070)
Q Consensus 73 vvsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~ 139 (1070)
-|.|+|+.++|||+|+|.|++.. |. .. ..|.|+-... +. .+ .+.+.++||+|..
T Consensus 16 kv~ivG~~~~GKTsL~~~l~~~~--~~---~~-~~t~g~~~~~--~~---~~--~~~l~l~D~~G~~ 69 (173)
T cd04154 16 RILILGLDNAGKTTILKKLLGED--ID---TI-SPTLGFQIKT--LE---YE--GYKLNIWDVGGQK 69 (173)
T ss_pred EEEEECCCCCCHHHHHHHHccCC--CC---Cc-CCccccceEE--EE---EC--CEEEEEEECCCCH
Confidence 46699999999999999999763 32 11 2355643221 11 12 3678999999954
No 323
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=94.88 E-value=0.041 Score=56.46 Aligned_cols=57 Identities=25% Similarity=0.216 Sum_probs=38.3
Q ss_pred EEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeeccccc
Q 001482 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (1070)
Q Consensus 74 vsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~ 139 (1070)
|.|+|..++|||+|++++.+.. |.- .. ..|.|.-+.. .+ ..+|..+.+.|+||+|..
T Consensus 5 i~vvG~~~vGKTsL~~~~~~~~--f~~--~~-~~t~~~~~~~-~~---~~~~~~~~l~i~Dt~G~~ 61 (172)
T cd04141 5 IVMLGAGGVGKSAVTMQFISHS--FPD--YH-DPTIEDAYKQ-QA---RIDNEPALLDILDTAGQA 61 (172)
T ss_pred EEEECCCCCcHHHHHHHHHhCC--CCC--Cc-CCcccceEEE-EE---EECCEEEEEEEEeCCCch
Confidence 6899999999999999999765 631 11 2344422221 12 125667889999999954
No 324
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=94.85 E-value=0.03 Score=58.49 Aligned_cols=56 Identities=25% Similarity=0.205 Sum_probs=36.9
Q ss_pred EEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeecccc
Q 001482 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI 138 (1070)
Q Consensus 74 vsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~ 138 (1070)
|.|+|..++|||+|+|.|.+.. |.-. . +.|.|.-.... + ..+|..+.+-|+||+|.
T Consensus 2 i~ivG~~~vGKTsli~~l~~~~--f~~~--~-~~t~~~~~~~~-~---~~~~~~~~l~i~Dt~G~ 57 (190)
T cd04144 2 LVVLGDGGVGKTALTIQLCLNH--FVET--Y-DPTIEDSYRKQ-V---VVDGQPCMLEVLDTAGQ 57 (190)
T ss_pred EEEECCCCCCHHHHHHHHHhCC--CCcc--C-CCchHhhEEEE-E---EECCEEEEEEEEECCCc
Confidence 6789999999999999998654 5321 1 23333222211 1 13466678889999995
No 325
>PLN03108 Rab family protein; Provisional
Probab=94.81 E-value=0.04 Score=58.63 Aligned_cols=59 Identities=24% Similarity=0.327 Sum_probs=37.5
Q ss_pred EEEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeeccccc
Q 001482 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (1070)
Q Consensus 73 vvsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~ 139 (1070)
=|.|+|+.++|||+|+|+|.+.. |...+ ..|.|+-.....+. .+|..+.+-++||.|..
T Consensus 8 kivivG~~gvGKStLi~~l~~~~--~~~~~---~~ti~~~~~~~~i~---~~~~~i~l~l~Dt~G~~ 66 (210)
T PLN03108 8 KYIIIGDTGVGKSCLLLQFTDKR--FQPVH---DLTIGVEFGARMIT---IDNKPIKLQIWDTAGQE 66 (210)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC--CCCCC---CCCccceEEEEEEE---ECCEEEEEEEEeCCCcH
Confidence 36799999999999999999765 53321 12333322211111 23555778899999953
No 326
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=94.81 E-value=0.034 Score=56.09 Aligned_cols=58 Identities=28% Similarity=0.420 Sum_probs=42.3
Q ss_pred EEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeeccccc
Q 001482 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (1070)
Q Consensus 74 vsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~ 139 (1070)
|.|+|+.++|||+|++.|.+.. |.- ....|.|+-....++.. ++..+.+-+.|+.|..
T Consensus 2 i~vvG~~~vGKtsl~~~~~~~~--~~~---~~~~t~~~~~~~~~~~~---~~~~~~l~i~D~~g~~ 59 (162)
T PF00071_consen 2 IVVVGDSGVGKTSLINRLINGE--FPE---NYIPTIGIDSYSKEVSI---DGKPVNLEIWDTSGQE 59 (162)
T ss_dssp EEEEESTTSSHHHHHHHHHHSS--TTS---SSETTSSEEEEEEEEEE---TTEEEEEEEEEETTSG
T ss_pred EEEECCCCCCHHHHHHHHHhhc--ccc---ccccccccccccccccc---cccccccccccccccc
Confidence 6799999999999999999765 642 22346666655554432 3667889999999853
No 327
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=94.80 E-value=0.093 Score=58.02 Aligned_cols=23 Identities=17% Similarity=0.239 Sum_probs=20.5
Q ss_pred EEEEeecCCCCChhHHHHHHhCC
Q 001482 72 GVVSVCGRARQGKSFILNQLLGR 94 (1070)
Q Consensus 72 ~vvsv~G~~r~GKS~lln~l~~~ 94 (1070)
-.|+|+|..++|||+|+|.|+..
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~ 25 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLF 25 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh
Confidence 46999999999999999999853
No 328
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=94.79 E-value=0.072 Score=57.82 Aligned_cols=90 Identities=20% Similarity=0.276 Sum_probs=49.0
Q ss_pred EEeecCCCCChhHHHHHHhCCCC----------CccccCCC-CcccceEEeeccccccccCCCCceeEEEeecccccccC
Q 001482 74 VSVCGRARQGKSFILNQLLGRSS----------GFQVASTH-RPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYD 142 (1070)
Q Consensus 74 vsv~G~~r~GKS~lln~l~~~~~----------gF~~~~~~-~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~~~~ 142 (1070)
|+|+|..++|||+|.+.|+.... |..+.... ...+.|+=+....... ...++.+.|+||+|...+.
T Consensus 2 i~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~---~~~~~~i~liDTPG~~~f~ 78 (237)
T cd04168 2 IGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASF---QWEDTKVNLIDTPGHMDFI 78 (237)
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEE---EECCEEEEEEeCCCccchH
Confidence 78999999999999999986431 11111100 0012222211111100 1234678999999975321
Q ss_pred CCCcchhHHHHHHHhhhhheeecCCCCCC
Q 001482 143 QTGTYSTQIFSLAVLLSSMFIYNQMGGID 171 (1070)
Q Consensus 143 ~~~~~d~~ifaL~~llSS~~IyN~~~~i~ 171 (1070)
....-++...=.-++||.....+.
T Consensus 79 -----~~~~~~l~~aD~~IlVvd~~~g~~ 102 (237)
T cd04168 79 -----AEVERSLSVLDGAILVISAVEGVQ 102 (237)
T ss_pred -----HHHHHHHHHhCeEEEEEeCCCCCC
Confidence 123344555455678887766554
No 329
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=94.78 E-value=0.11 Score=55.86 Aligned_cols=55 Identities=20% Similarity=0.320 Sum_probs=36.8
Q ss_pred CCEEEEEeecCCCCChhHHHHHHhCCCCCccccCCCCcccce-EEeeccccccccCCCCceeEEEeeccc
Q 001482 69 EPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKG-LWLWSAPLKRTALDGTEYNLLLLDSEG 137 (1070)
Q Consensus 69 ~~v~vvsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~g-iw~~~~p~~~~~~~g~~~~~~llDteG 137 (1070)
.|-.+|+|+|+.++|||+|+|.|++...+-.+ ....| +++|.. . ...+.|+||+|
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~-----~~~~g~i~i~~~-------~--~~~i~~vDtPg 92 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNI-----SDIKGPITVVTG-------K--KRRLTFIECPN 92 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccCcc-----ccccccEEEEec-------C--CceEEEEeCCc
Confidence 45568999999999999999999976322111 12233 445431 1 24678999998
No 330
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=94.78 E-value=0.07 Score=58.31 Aligned_cols=57 Identities=26% Similarity=0.462 Sum_probs=37.4
Q ss_pred EEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeeccccc
Q 001482 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (1070)
Q Consensus 74 vsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~ 139 (1070)
|.|+|..++|||+|+|++++.. |.-. ..|.+..+..+. + ..+|..+.+-|+||.|..
T Consensus 3 VvvlG~~gvGKTSLi~r~~~~~--f~~~--y~pTi~d~~~k~--~---~i~~~~~~l~I~Dt~G~~ 59 (247)
T cd04143 3 MVVLGASKVGKTAIVSRFLGGR--FEEQ--YTPTIEDFHRKL--Y---SIRGEVYQLDILDTSGNH 59 (247)
T ss_pred EEEECcCCCCHHHHHHHHHcCC--CCCC--CCCChhHhEEEE--E---EECCEEEEEEEEECCCCh
Confidence 7899999999999999999765 6431 112221222211 1 124666788899999954
No 331
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.77 E-value=0.031 Score=47.95 Aligned_cols=41 Identities=17% Similarity=0.293 Sum_probs=28.2
Q ss_pred EEEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeecccc
Q 001482 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPL 118 (1070)
Q Consensus 73 vvsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~ 118 (1070)
||.|+|+.++|||++++.|.....|..+ ....++|++...+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l~~~~~-----~~i~~~~I~eg~~ 41 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQLGGRSV-----VVLDEIVILEGLY 41 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhcCCCE-----EEEeEEEEecchh
Confidence 5889999999999999998865311111 2234488876544
No 332
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=94.76 E-value=0.068 Score=65.81 Aligned_cols=103 Identities=20% Similarity=0.302 Sum_probs=58.5
Q ss_pred EEEEEeecCCCCChhHHHHHHhCCCCCccc---cCCCC-----cccceEEeecccccc--ccCCCCceeEEEeecccccc
Q 001482 71 IGVVSVCGRARQGKSFILNQLLGRSSGFQV---ASTHR-----PCTKGLWLWSAPLKR--TALDGTEYNLLLLDSEGIDA 140 (1070)
Q Consensus 71 v~vvsv~G~~r~GKS~lln~l~~~~~gF~~---~~~~~-----~~t~giw~~~~p~~~--~~~~g~~~~~~llDteG~~~ 140 (1070)
|-=|+|+|...+|||+|++.|+.....+.- +.+.. --+.||=+...++.. ...+|..+.+.|+||+|...
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 455899999999999999999865322211 11110 113466544433221 11256678899999999753
Q ss_pred cCCCCcchhHHHHHHHhhhhheeecCCCCCCHHHhhhh
Q 001482 141 YDQTGTYSTQIFSLAVLLSSMFIYNQMGGIDESAIDRL 178 (1070)
Q Consensus 141 ~~~~~~~d~~ifaL~~llSS~~IyN~~~~i~~~~l~~L 178 (1070)
+. .....++...=.-++||.....+....+..+
T Consensus 83 F~-----~~v~~~l~~aD~aILVvDat~g~~~qt~~~~ 115 (595)
T TIGR01393 83 FS-----YEVSRSLAACEGALLLVDAAQGIEAQTLANV 115 (595)
T ss_pred HH-----HHHHHHHHhCCEEEEEecCCCCCCHhHHHHH
Confidence 21 1222334443334566766655555554443
No 333
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=94.76 E-value=0.061 Score=59.53 Aligned_cols=92 Identities=14% Similarity=0.247 Sum_probs=47.8
Q ss_pred EEeecCCCCChhHHHHHHhCCCCC-ccccC----------CCCcccceEEeeccccccccCCCCceeEEEeecccccccC
Q 001482 74 VSVCGRARQGKSFILNQLLGRSSG-FQVAS----------THRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYD 142 (1070)
Q Consensus 74 vsv~G~~r~GKS~lln~l~~~~~g-F~~~~----------~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~~~~ 142 (1070)
|+|+|..++|||+|.|.|+...+. -..|. ....-..||=+-....... ...+.+.|+||||...+.
T Consensus 2 v~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~---~~~~~i~liDTPG~~df~ 78 (270)
T cd01886 2 IGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCF---WKDHRINIIDTPGHVDFT 78 (270)
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEE---ECCEEEEEEECCCcHHHH
Confidence 789999999999999999843210 00110 0011123333322211111 124678899999964321
Q ss_pred CCCcchhHHHHHHHhhhhheeecCCCCCCHH
Q 001482 143 QTGTYSTQIFSLAVLLSSMFIYNQMGGIDES 173 (1070)
Q Consensus 143 ~~~~~d~~ifaL~~llSS~~IyN~~~~i~~~ 173 (1070)
..+.-++...=.-++|......+...
T Consensus 79 -----~~~~~~l~~aD~ailVVDa~~g~~~~ 104 (270)
T cd01886 79 -----IEVERSLRVLDGAVAVFDAVAGVEPQ 104 (270)
T ss_pred -----HHHHHHHHHcCEEEEEEECCCCCCHH
Confidence 12334455444445666655555443
No 334
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=94.72 E-value=0.059 Score=56.18 Aligned_cols=40 Identities=30% Similarity=0.347 Sum_probs=32.0
Q ss_pred eCHHHHHHHHccCCCEEEEEeecCCCCChhHHHHHHhCCC
Q 001482 56 MDPEAVAALQLVKEPIGVVSVCGRARQGKSFILNQLLGRS 95 (1070)
Q Consensus 56 ~~~eal~~l~~~~~~v~vvsv~G~~r~GKS~lln~l~~~~ 95 (1070)
++++..++|...-.+=.+|.|+|+.++|||||++.|++..
T Consensus 10 ~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 10 FSPLQAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3678888887543344579999999999999999999754
No 335
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=94.70 E-value=0.036 Score=64.05 Aligned_cols=57 Identities=33% Similarity=0.413 Sum_probs=36.7
Q ss_pred EEEeecCCCCChhHHHHHHhCCCCC----ccccCCCCcccceEEeeccccccccCCCCceeEEEeecccccc
Q 001482 73 VVSVCGRARQGKSFILNQLLGRSSG----FQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (1070)
Q Consensus 73 vvsv~G~~r~GKS~lln~l~~~~~g----F~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~~ 140 (1070)
-|.++|.+++|||+|+|.|++...+ +.+++. -.+|.++ ++. |+ ++ .+.++||||+..
T Consensus 156 ~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~-pgtT~~~-~~~-~~-----~~---~~~l~DtPG~~~ 216 (360)
T TIGR03597 156 DVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPF-PGTTLDL-IEI-PL-----DD---GHSLYDTPGIIN 216 (360)
T ss_pred eEEEECCCCCCHHHHHHHHHhhccCCcceeeecCC-CCeEeeE-EEE-Ee-----CC---CCEEEECCCCCC
Confidence 5789999999999999999986432 333332 2235543 222 11 11 256899999863
No 336
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=94.67 E-value=0.05 Score=57.26 Aligned_cols=57 Identities=21% Similarity=0.325 Sum_probs=35.6
Q ss_pred EEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeeccccc
Q 001482 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (1070)
Q Consensus 74 vsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~ 139 (1070)
|.|+|..++|||+|++.|++.. |.- ...+.+..+.... + ..+|..+.+.|+||+|..
T Consensus 2 v~vvG~~~vGKTsll~~~~~~~--~~~--~~~~t~~~~~~~~--~---~~~~~~~~l~i~D~~G~~ 58 (198)
T cd04147 2 LVFMGAAGVGKTALIQRFLYDT--FEP--KYRRTVEEMHRKE--Y---EVGGVSLTLDILDTSGSY 58 (198)
T ss_pred EEEECCCCCCHHHHHHHHHhCC--CCc--cCCCchhhheeEE--E---EECCEEEEEEEEECCCch
Confidence 6799999999999999999865 432 1112221111111 0 012445778899999954
No 337
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=94.64 E-value=0.083 Score=53.93 Aligned_cols=53 Identities=23% Similarity=0.223 Sum_probs=37.0
Q ss_pred EEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeeccccc
Q 001482 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (1070)
Q Consensus 74 vsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~ 139 (1070)
|.++|+.++|||+|+|+|.+.. |. + . ..|.|+-+... ++..+.+.++||+|..
T Consensus 2 vvlvG~~~~GKTsl~~~l~~~~--~~--~-~-~~T~~~~~~~~-------~~~~~~i~l~Dt~G~~ 54 (169)
T cd04158 2 VVTLGLDGAGKTTILFKLKQDE--FM--Q-P-IPTIGFNVETV-------EYKNLKFTIWDVGGKH 54 (169)
T ss_pred EEEECCCCCCHHHHHHHHhcCC--CC--C-c-CCcCceeEEEE-------EECCEEEEEEECCCCh
Confidence 5699999999999999999864 42 1 1 23566544321 1235788999999964
No 338
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=94.64 E-value=0.062 Score=61.37 Aligned_cols=64 Identities=20% Similarity=0.240 Sum_probs=39.2
Q ss_pred EEEeecCCCCChhHHHHHHhCCCCCcccc----CCCCcccceEEeecccccc-----ccCCC-CceeEEEeeccccc
Q 001482 73 VVSVCGRARQGKSFILNQLLGRSSGFQVA----STHRPCTKGLWLWSAPLKR-----TALDG-TEYNLLLLDSEGID 139 (1070)
Q Consensus 73 vvsv~G~~r~GKS~lln~l~~~~~gF~~~----~~~~~~t~giw~~~~p~~~-----~~~~g-~~~~~~llDteG~~ 139 (1070)
.|+|+|.+.+|||||+|.|.|.. -.++ .|..| ..|+.-+..+-.. ..|.. ....+.|+||+|+-
T Consensus 4 ~vgIVG~PNvGKSTLfnaLt~~~--~~v~nypftTi~p-~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~ 77 (364)
T PRK09601 4 KCGIVGLPNVGKSTLFNALTKAG--AEAANYPFCTIEP-NVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLV 77 (364)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--Ceecccccccccc-eEEEEEeccccchhhHHhcCCccccCceEEEEECCCCC
Confidence 58999999999999999999865 1222 12233 4566655432100 01110 01258899999985
No 339
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=94.63 E-value=7 Score=41.17 Aligned_cols=37 Identities=16% Similarity=0.104 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001482 615 VCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWK 651 (1070)
Q Consensus 615 l~~Ei~~Lk~~l~~le~~l~~l~~e~q~lq~el~e~k 651 (1070)
++.++..|+-+.+.++.+...+..+...+....+...
T Consensus 98 ~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i 134 (201)
T PF13851_consen 98 LEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAI 134 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444333333
No 340
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=94.62 E-value=27 Score=47.82 Aligned_cols=21 Identities=38% Similarity=0.515 Sum_probs=17.7
Q ss_pred EEEEeecCCCCChhHHHHHHh
Q 001482 72 GVVSVCGRARQGKSFILNQLL 92 (1070)
Q Consensus 72 ~vvsv~G~~r~GKS~lln~l~ 92 (1070)
++..|.|+.|||||++|..|+
T Consensus 25 g~~~~~G~NGsGKS~~lda~~ 45 (1353)
T TIGR02680 25 GRLLLRGNNGAGKSKVLELLL 45 (1353)
T ss_pred CeEEEECCCCCcHHHHHHHHH
Confidence 467789999999999999743
No 341
>CHL00071 tufA elongation factor Tu
Probab=94.62 E-value=0.1 Score=61.53 Aligned_cols=104 Identities=13% Similarity=0.170 Sum_probs=55.6
Q ss_pred CCCEEEEEeecCCCCChhHHHHHHhCCCC------CccccC---CCCcccceEEeeccccccccCCCCceeEEEeecccc
Q 001482 68 KEPIGVVSVCGRARQGKSFILNQLLGRSS------GFQVAS---THRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI 138 (1070)
Q Consensus 68 ~~~v~vvsv~G~~r~GKS~lln~l~~~~~------gF~~~~---~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~ 138 (1070)
..|..-|+|+|...+|||+|+|.|++... ++.... ....-..|+=+-....... .....+.|+||||.
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~---~~~~~~~~iDtPGh 85 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYE---TENRHYAHVDCPGH 85 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEc---cCCeEEEEEECCCh
Confidence 45667799999999999999999997531 111110 0011124444333222111 12356889999994
Q ss_pred cccCCCCcchhHHHHHHHhhhhheeecCCCCCCHHHhhhhH
Q 001482 139 DAYDQTGTYSTQIFSLAVLLSSMFIYNQMGGIDESAIDRLS 179 (1070)
Q Consensus 139 ~~~~~~~~~d~~ifaL~~llSS~~IyN~~~~i~~~~l~~L~ 179 (1070)
..+ ....+.+++..=.-++|......+...+...+.
T Consensus 86 ~~~-----~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~ 121 (409)
T CHL00071 86 ADY-----VKNMITGAAQMDGAILVVSAADGPMPQTKEHIL 121 (409)
T ss_pred HHH-----HHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHH
Confidence 311 133344544433334555555445555544443
No 342
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=94.62 E-value=6.9 Score=50.21 Aligned_cols=30 Identities=13% Similarity=0.268 Sum_probs=17.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001482 705 ATKIEHAEQCLTTLRLELKAAESKMRSYEV 734 (1070)
Q Consensus 705 ~~kie~~e~~l~~l~~el~e~e~ki~~~e~ 734 (1070)
....+-+..++..++.++.+++.++..+..
T Consensus 193 ~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~ 222 (754)
T TIGR01005 193 TAAADFLAPEIADLSKQSRDAEAEVAAYRA 222 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444556666666666666666666554
No 343
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=94.61 E-value=0.068 Score=55.46 Aligned_cols=57 Identities=21% Similarity=0.210 Sum_probs=36.8
Q ss_pred EEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeecccc
Q 001482 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI 138 (1070)
Q Consensus 74 vsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~ 138 (1070)
|.++|+.++|||+|+|.+.+.. |. ++ ..|.|+-....-+ ...++..+.+.+.||+|.
T Consensus 6 v~~vG~~~~GKTsli~~~~~~~--~~--~~--~~t~~~~~~~~~~--~~~~~~~~~l~l~Dt~G~ 62 (183)
T cd04152 6 IVMLGLDSAGKTTVLYRLKFNE--FV--NT--VPTKGFNTEKIKV--SLGNSKGITFHFWDVGGQ 62 (183)
T ss_pred EEEECCCCCCHHHHHHHHhcCC--cC--Cc--CCccccceeEEEe--eccCCCceEEEEEECCCc
Confidence 6788999999999999998754 53 11 2344532221111 112345678999999995
No 344
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=94.59 E-value=0.06 Score=56.99 Aligned_cols=57 Identities=18% Similarity=0.286 Sum_probs=35.6
Q ss_pred EEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeeccccc
Q 001482 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (1070)
Q Consensus 74 vsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~ 139 (1070)
|.++|+.++|||+|+++|.+.. |.-..+......+.|.-. +.+..+.+.|+||||..
T Consensus 3 vll~G~~~sGKTsL~~~l~~~~--~~~t~~s~~~~~~~~~~~-------~~~~~~~~~l~D~pG~~ 59 (203)
T cd04105 3 VLLLGPSDSGKTALFTKLTTGK--YRSTVTSIEPNVATFILN-------SEGKGKKFRLVDVPGHP 59 (203)
T ss_pred EEEEcCCCCCHHHHHHHHhcCC--CCCccCcEeecceEEEee-------cCCCCceEEEEECCCCH
Confidence 7799999999999999999764 422211111122333221 11234678899999954
No 345
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=94.57 E-value=0.11 Score=52.23 Aligned_cols=53 Identities=21% Similarity=0.186 Sum_probs=34.3
Q ss_pred EEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeeccccc
Q 001482 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (1070)
Q Consensus 74 vsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~ 139 (1070)
|.|+|+.++|||+|+|.|.... |. . . ..|.|.-+.. + ++..+.+.++||+|..
T Consensus 2 v~lvG~~~~GKTsl~~~l~~~~--~~-~-~--~~t~~~~~~~--~-----~~~~~~~~i~Dt~G~~ 54 (158)
T cd04151 2 ILILGLDNAGKTTILYRLQLGE--VV-T-T--IPTIGFNVET--V-----TYKNLKFQVWDLGGQT 54 (158)
T ss_pred EEEECCCCCCHHHHHHHHccCC--Cc-C-c--CCccCcCeEE--E-----EECCEEEEEEECCCCH
Confidence 6789999999999999997543 32 1 1 1233432211 1 1234678999999964
No 346
>PRK09602 translation-associated GTPase; Reviewed
Probab=94.54 E-value=0.059 Score=62.89 Aligned_cols=65 Identities=23% Similarity=0.314 Sum_probs=39.6
Q ss_pred EEEeecCCCCChhHHHHHHhCCCCCccccC---CCCcccceEEee------------ccccccccCCCC-ceeEEEeecc
Q 001482 73 VVSVCGRARQGKSFILNQLLGRSSGFQVAS---THRPCTKGLWLW------------SAPLKRTALDGT-EYNLLLLDSE 136 (1070)
Q Consensus 73 vvsv~G~~r~GKS~lln~l~~~~~gF~~~~---~~~~~t~giw~~------------~~p~~~~~~~g~-~~~~~llDte 136 (1070)
-|+|+|.+.+|||+|+|.|.+.. +.+++ +....+.|+-.- +.|.....++|. .+.+-|+||+
T Consensus 3 kigivG~pnvGKSTlfn~Lt~~~--~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~a 80 (396)
T PRK09602 3 TIGLVGKPNVGKSTFFNAATLAD--VEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVA 80 (396)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc--ccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcC
Confidence 48999999999999999999875 44322 111234565221 112111112332 2567899999
Q ss_pred ccc
Q 001482 137 GID 139 (1070)
Q Consensus 137 G~~ 139 (1070)
|+-
T Consensus 81 Gl~ 83 (396)
T PRK09602 81 GLV 83 (396)
T ss_pred CcC
Confidence 984
No 347
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=94.54 E-value=5.1 Score=39.18 Aligned_cols=45 Identities=29% Similarity=0.341 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001482 615 VCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVR 659 (1070)
Q Consensus 615 l~~Ei~~Lk~~l~~le~~l~~l~~e~q~lq~el~e~k~~le~e~~ 659 (1070)
+..++..+.....+....+..++.++............+|+.++.
T Consensus 8 l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~ 52 (132)
T PF07926_consen 8 LQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELV 52 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444454455545555544444445555555555554
No 348
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=94.52 E-value=0.081 Score=64.78 Aligned_cols=24 Identities=33% Similarity=0.624 Sum_probs=22.0
Q ss_pred EEEEeecCCCCChhHHHHHHhCCC
Q 001482 72 GVVSVCGRARQGKSFILNQLLGRS 95 (1070)
Q Consensus 72 ~vvsv~G~~r~GKS~lln~l~~~~ 95 (1070)
.||+|+|....|||+|+|.|.+..
T Consensus 5 piV~IiG~~d~GKTSLln~l~~~~ 28 (590)
T TIGR00491 5 PIVSVLGHVDHGKTTLLDKIRGSA 28 (590)
T ss_pred CEEEEECCCCCCHHHHHHHHhccc
Confidence 479999999999999999999875
No 349
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.51 E-value=0.076 Score=62.04 Aligned_cols=24 Identities=21% Similarity=0.245 Sum_probs=21.4
Q ss_pred CCEEEEEeecCCCCChhHHHHHHh
Q 001482 69 EPIGVVSVCGRARQGKSFILNQLL 92 (1070)
Q Consensus 69 ~~v~vvsv~G~~r~GKS~lln~l~ 92 (1070)
++-.||.++|++|+||||++..|.
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA 121 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLA 121 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 345799999999999999999986
No 350
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=94.50 E-value=19 Score=45.51 Aligned_cols=37 Identities=27% Similarity=0.332 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001482 895 ASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQA 931 (1070)
Q Consensus 895 ~~~i~~le~~Le~er~~~~ea~~r~~~L~~ql~~~~~ 931 (1070)
...+..|+.+++.++....+...+...|..++++...
T Consensus 679 ~~Ki~~Le~Ele~er~~~~e~~~kc~~Le~el~r~~~ 715 (769)
T PF05911_consen 679 QSKISSLEEELEKERALSEELEAKCRELEEELERMKK 715 (769)
T ss_pred HHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhhc
Confidence 3455667777777777777777777777777666543
No 351
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=94.48 E-value=7.5 Score=41.70 Aligned_cols=50 Identities=10% Similarity=0.171 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001482 724 AAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVY 773 (1070)
Q Consensus 724 e~e~ki~~~e~e~~~l~~ei~~l~~~le~~~~~i~~le~~l~~le~e~~~ 773 (1070)
.++...+.+..++..-+.++.-+..++......++.++.++..+..+++.
T Consensus 78 ~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELEr 127 (307)
T PF10481_consen 78 NLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELER 127 (307)
T ss_pred HHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444444444555555555444444444444444443
No 352
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=94.47 E-value=9.6 Score=42.06 Aligned_cols=26 Identities=19% Similarity=0.219 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001482 916 NAMAERLSLEVQSAQAKLDEMQQELT 941 (1070)
Q Consensus 916 ~~r~~~L~~ql~~~~~~l~~le~el~ 941 (1070)
..+...++.+...+...|......+.
T Consensus 226 ~~k~~~l~~~~~~~~~~L~~a~~~L~ 251 (264)
T PF06008_consen 226 EKKKQELSEQQNEVSETLKEAEDLLD 251 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444443
No 353
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=94.46 E-value=0.057 Score=56.38 Aligned_cols=57 Identities=26% Similarity=0.235 Sum_probs=37.7
Q ss_pred EEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeeccccc
Q 001482 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (1070)
Q Consensus 74 vsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~ 139 (1070)
|.|+|+.++|||+|+++|++.. |.-. . ..|.|.-.... + ..+|..+.+.++||.|..
T Consensus 3 ivivG~~~vGKTsli~~~~~~~--~~~~--~-~~t~~~~~~~~-i---~~~~~~~~l~i~Dt~G~~ 59 (189)
T cd04134 3 VVVLGDGACGKTSLLNVFTRGY--FPQV--Y-EPTVFENYVHD-I---FVDGLHIELSLWDTAGQE 59 (189)
T ss_pred EEEECCCCCCHHHHHHHHhcCC--CCCc--c-CCcceeeeEEE-E---EECCEEEEEEEEECCCCh
Confidence 6799999999999999999765 5321 1 22333322111 1 124666889999999964
No 354
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=94.44 E-value=0.059 Score=61.08 Aligned_cols=34 Identities=21% Similarity=0.115 Sum_probs=25.9
Q ss_pred HHHHHHc---cCCCEEEEEeecCCCCChhHHHHHHhC
Q 001482 60 AVAALQL---VKEPIGVVSVCGRARQGKSFILNQLLG 93 (1070)
Q Consensus 60 al~~l~~---~~~~v~vvsv~G~~r~GKS~lln~l~~ 93 (1070)
+-.++.. ..++-.||+|+|++|+|||||++.|..
T Consensus 42 ~~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~ 78 (332)
T PRK09435 42 AQELLDALLPHTGNALRIGITGVPGVGKSTFIEALGM 78 (332)
T ss_pred HHHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHH
Confidence 4444443 245667999999999999999999763
No 355
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=94.43 E-value=12 Score=43.06 Aligned_cols=31 Identities=19% Similarity=0.371 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001482 562 YTSRINNLQGENISLREKSSSLSKTVDSLKN 592 (1070)
Q Consensus 562 ~~~~i~~L~~~~~~Le~~~~~l~~eLe~~~~ 592 (1070)
+-..+..|+..|..-++++..|++..+.+..
T Consensus 328 ~~g~l~kl~~eie~kEeei~~L~~~~d~L~~ 358 (622)
T COG5185 328 WPGKLEKLKSEIELKEEEIKALQSNIDELHK 358 (622)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 3334444444444444444444444444443
No 356
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=94.43 E-value=6.6 Score=47.70 Aligned_cols=26 Identities=19% Similarity=0.445 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001482 708 IEHAEQCLTTLRLELKAAESKMRSYE 733 (1070)
Q Consensus 708 ie~~e~~l~~l~~el~e~e~ki~~~e 733 (1070)
.+-++.++..++.++.+++.++..+.
T Consensus 163 ~~fl~~ql~~~~~~L~~ae~~l~~f~ 188 (498)
T TIGR03007 163 QRFIDEQIKTYEKKLEAAENRLKAFK 188 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555666666555555543
No 357
>PRK09866 hypothetical protein; Provisional
Probab=94.36 E-value=0.087 Score=63.38 Aligned_cols=29 Identities=24% Similarity=0.455 Sum_probs=24.2
Q ss_pred cCCCEEEEEeecCCCCChhHHHHHHhCCC
Q 001482 67 VKEPIGVVSVCGRARQGKSFILNQLLGRS 95 (1070)
Q Consensus 67 ~~~~v~vvsv~G~~r~GKS~lln~l~~~~ 95 (1070)
+...-.+|+|+|++++|||+|+|.|+|..
T Consensus 65 v~~~~~~valvG~sgaGKSTLiNaL~G~~ 93 (741)
T PRK09866 65 ISRLEMVLAIVGTMKAGKSTTINAIVGTE 93 (741)
T ss_pred HhccceEEEEECCCCCCHHHHHHHHhCCc
Confidence 33334789999999999999999999864
No 358
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=94.35 E-value=25 Score=46.37 Aligned_cols=9 Identities=22% Similarity=0.523 Sum_probs=3.9
Q ss_pred HHHHHHHHH
Q 001482 529 LLKKQLEDS 537 (1070)
Q Consensus 529 ~L~k~le~~ 537 (1070)
.++.+++..
T Consensus 27 ~iq~~l~~~ 35 (1109)
T PRK10929 27 QITQELEQA 35 (1109)
T ss_pred HHHHHHHHh
Confidence 344444443
No 359
>PRK10218 GTP-binding protein; Provisional
Probab=94.35 E-value=0.14 Score=62.85 Aligned_cols=95 Identities=13% Similarity=0.274 Sum_probs=58.2
Q ss_pred CEEEEEeecCCCCChhHHHHHHhCCCCCccccCC---------CCcccceEEeeccccccccCCCCceeEEEeecccccc
Q 001482 70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVAST---------HRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (1070)
Q Consensus 70 ~v~vvsv~G~~r~GKS~lln~l~~~~~gF~~~~~---------~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~~ 140 (1070)
.|--|+|+|...+|||+|++.|+.....|.-... ....+.||.+....... ....+.+.|+||+|...
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i---~~~~~~inliDTPG~~d 80 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAI---KWNDYRINIVDTPGHAD 80 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEE---ecCCEEEEEEECCCcch
Confidence 4667999999999999999999986655643211 12346788776543322 23357889999999654
Q ss_pred cCCCCcchhHHHHHHHhhhhheeecCCCCCCH
Q 001482 141 YDQTGTYSTQIFSLAVLLSSMFIYNQMGGIDE 172 (1070)
Q Consensus 141 ~~~~~~~d~~ifaL~~llSS~~IyN~~~~i~~ 172 (1070)
+. ..+..++...=.-++||+....+..
T Consensus 81 f~-----~~v~~~l~~aDg~ILVVDa~~G~~~ 107 (607)
T PRK10218 81 FG-----GEVERVMSMVDSVLLVVDAFDGPMP 107 (607)
T ss_pred hH-----HHHHHHHHhCCEEEEEEecccCccH
Confidence 32 1233334443333466665544433
No 360
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=94.34 E-value=5.2 Score=42.84 Aligned_cols=65 Identities=12% Similarity=0.186 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001482 745 ELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRE 809 (1070)
Q Consensus 745 ~l~~~le~~~~~i~~le~~l~~le~e~~~le~~l~~~~~~~ee~~e~l~~~e~e~~~~~e~~~~l 809 (1070)
.|..+...+...++.+++...++..++..-+..+.-++..+......+..++.+++.+..+++..
T Consensus 64 ~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErs 128 (307)
T PF10481_consen 64 ALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERS 128 (307)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444455555555555544444444445555555555555555555554444433
No 361
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=94.29 E-value=0.087 Score=55.66 Aligned_cols=61 Identities=20% Similarity=0.175 Sum_probs=40.2
Q ss_pred EEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeec--cccccccCCCCceeEEEeeccccc
Q 001482 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWS--APLKRTALDGTEYNLLLLDSEGID 139 (1070)
Q Consensus 74 vsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~--~p~~~~~~~g~~~~~~llDteG~~ 139 (1070)
|.++|..++|||+|++.+++.. |.-. ...|.|.-+.. ..+....++|..+.+-+.||.|..
T Consensus 3 IvlvGd~gVGKTSLi~~~~~~~--f~~~---~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e 65 (202)
T cd04102 3 VLVVGDSGVGKSSLVHLICKNQ--VLGR---PSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSE 65 (202)
T ss_pred EEEECCCCCCHHHHHHHHHcCC--CCCC---CCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCch
Confidence 6799999999999999999876 5322 13355532221 122112245667889999999953
No 362
>PRK04004 translation initiation factor IF-2; Validated
Probab=94.29 E-value=0.11 Score=63.84 Aligned_cols=23 Identities=30% Similarity=0.628 Sum_probs=21.2
Q ss_pred EEEeecCCCCChhHHHHHHhCCC
Q 001482 73 VVSVCGRARQGKSFILNQLLGRS 95 (1070)
Q Consensus 73 vvsv~G~~r~GKS~lln~l~~~~ 95 (1070)
||+|+|...+|||+|+|.|.|..
T Consensus 8 ~V~i~Gh~~~GKTSLl~~l~~~~ 30 (586)
T PRK04004 8 IVVVLGHVDHGKTTLLDKIRGTA 30 (586)
T ss_pred EEEEECCCCCCHHHHHHHHhCcc
Confidence 79999999999999999998764
No 363
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=94.26 E-value=0.065 Score=58.58 Aligned_cols=77 Identities=19% Similarity=0.173 Sum_probs=44.9
Q ss_pred EEEeecCCCCChhHHHHHHhCC----CCCccccC--CCCcccce-EEeeccccccccCCCCceeEEEeecccccccCCCC
Q 001482 73 VVSVCGRARQGKSFILNQLLGR----SSGFQVAS--THRPCTKG-LWLWSAPLKRTALDGTEYNLLLLDSEGIDAYDQTG 145 (1070)
Q Consensus 73 vvsv~G~~r~GKS~lln~l~~~----~~gF~~~~--~~~~~t~g-iw~~~~p~~~~~~~g~~~~~~llDteG~~~~~~~~ 145 (1070)
-|=|+|.++.|||.|.|.+-.. ...-.+|+ |+-.-+.+ |-+... ..+.++||||...++-..
T Consensus 145 ~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~r-----------p~vy~iDTPGil~P~I~~ 213 (335)
T KOG2485|consen 145 NVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHR-----------PPVYLIDTPGILVPSIVD 213 (335)
T ss_pred eEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccC-----------CceEEecCCCcCCCCCCC
Confidence 4668999999999999998532 22223332 22222333 233322 358889999998775544
Q ss_pred cchhHHHHHHHhhhh
Q 001482 146 TYSTQIFSLAVLLSS 160 (1070)
Q Consensus 146 ~~d~~ifaL~~llSS 160 (1070)
..+..=.||+.++++
T Consensus 214 ~e~~lKLAL~g~Vkd 228 (335)
T KOG2485|consen 214 VEDGLKLALCGLVKD 228 (335)
T ss_pred HHHhhhhhhcccccc
Confidence 444443444443333
No 364
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=94.25 E-value=2.9 Score=39.96 Aligned_cols=36 Identities=17% Similarity=0.160 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001482 900 KLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDE 935 (1070)
Q Consensus 900 ~le~~Le~er~~~~ea~~r~~~L~~ql~~~~~~l~~ 935 (1070)
+++...+..-+.+.+...+++.|+..+.+++.....
T Consensus 79 ~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~myr~ 114 (120)
T PF12325_consen 79 ELQQRYQTLLELLGEKSEEVEELRADVQDLKEMYRE 114 (120)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444455566666666655555444
No 365
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=94.24 E-value=9.8 Score=41.26 Aligned_cols=18 Identities=22% Similarity=0.614 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001482 586 TVDSLKNEISDWKRKYDQ 603 (1070)
Q Consensus 586 eLe~~~~el~e~k~k~e~ 603 (1070)
.+..++.++.+|+.+.+.
T Consensus 64 ~l~~ak~eLqe~eek~e~ 81 (258)
T PF15397_consen 64 QLQQAKAELQEWEEKEES 81 (258)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 444455555555554444
No 366
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=94.24 E-value=0.093 Score=53.67 Aligned_cols=64 Identities=25% Similarity=0.267 Sum_probs=41.9
Q ss_pred CCEEEEEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeeccccc
Q 001482 69 EPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (1070)
Q Consensus 69 ~~v~vvsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~ 139 (1070)
.++.=|.|+|..++|||+|++++++.. |.+.. . ..|.|.-.....+. .+|..+.+.+.||.|..
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~--f~~~~-~-~~T~~~~~~~~~~~---~~~~~~~l~~~d~~g~~ 65 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRS--FSLNA-Y-SPTIKPRYAVNTVE---VYGQEKYLILREVGEDE 65 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCC--CCccc-C-CCccCcceEEEEEE---ECCeEEEEEEEecCCcc
Confidence 467778999999999999999999876 75221 1 22433322222221 24666778888998843
No 367
>PTZ00369 Ras-like protein; Provisional
Probab=94.24 E-value=0.073 Score=55.51 Aligned_cols=57 Identities=23% Similarity=0.173 Sum_probs=36.0
Q ss_pred EEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeeccccc
Q 001482 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (1070)
Q Consensus 74 vsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~ 139 (1070)
|.|+|..++|||+|++.+.+.. |.- .. ..|.|--++ .++. .+|..+.+-++||+|..
T Consensus 8 i~iiG~~~~GKTsLi~~~~~~~--~~~--~~-~~t~~~~~~-~~~~---~~~~~~~l~i~Dt~G~~ 64 (189)
T PTZ00369 8 LVVVGGGGVGKSALTIQFIQNH--FID--EY-DPTIEDSYR-KQCV---IDEETCLLDILDTAGQE 64 (189)
T ss_pred EEEECCCCCCHHHHHHHHhcCC--CCc--Cc-CCchhhEEE-EEEE---ECCEEEEEEEEeCCCCc
Confidence 5689999999999999999765 521 11 123332222 1111 23555677789999964
No 368
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=94.24 E-value=0.066 Score=67.64 Aligned_cols=57 Identities=23% Similarity=0.336 Sum_probs=39.7
Q ss_pred EEEeecCCCCChhHHHHHHhCCCCCccccCCCC---cccceEEeeccccccccCCCCceeEEEeecccccccC
Q 001482 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHR---PCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYD 142 (1070)
Q Consensus 73 vvsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~---~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~~~~ 142 (1070)
.|+++|.+++|||+|.|.|.|.. +.+++... ....|.+-| ....+.++||||..+..
T Consensus 5 ~IaLvG~pNvGKSTLfN~Ltg~~--~~vgn~pGvTve~k~g~~~~-----------~~~~i~lvDtPG~ysl~ 64 (772)
T PRK09554 5 TIGLIGNPNSGKTTLFNQLTGAR--QRVGNWAGVTVERKEGQFST-----------TDHQVTLVDLPGTYSLT 64 (772)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CccCCCCCceEeeEEEEEEc-----------CceEEEEEECCCccccc
Confidence 58999999999999999999875 44544211 112344333 23568889999987654
No 369
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=94.18 E-value=0.054 Score=61.44 Aligned_cols=54 Identities=15% Similarity=0.240 Sum_probs=38.7
Q ss_pred EEEEeecCCCCChhHHHHHHhCCCCCccccCCCCcccce-EEeeccccccccCCCCceeEEEeec
Q 001482 72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKG-LWLWSAPLKRTALDGTEYNLLLLDS 135 (1070)
Q Consensus 72 ~vvsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~g-iw~~~~p~~~~~~~g~~~~~~llDt 135 (1070)
-+++++||.|+||||||..|.|-. .+|.| ||+-..++....|....+.+||=|.
T Consensus 32 ef~~lLGPSGcGKTTlLR~IAGfe----------~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~Y 86 (352)
T COG3842 32 EFVTLLGPSGCGKTTLLRMIAGFE----------QPSSGEILLDGEDITDVPPEKRPIGMVFQSY 86 (352)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC----------CCCCceEEECCEECCCCChhhcccceeecCc
Confidence 489999999999999999998743 34555 7777776655445444566665443
No 370
>PLN03126 Elongation factor Tu; Provisional
Probab=94.17 E-value=0.11 Score=62.00 Aligned_cols=105 Identities=13% Similarity=0.184 Sum_probs=57.0
Q ss_pred cCCCEEEEEeecCCCCChhHHHHHHhCCCC--------CccccC-CCCcccceEEeeccccccccCCCCceeEEEeeccc
Q 001482 67 VKEPIGVVSVCGRARQGKSFILNQLLGRSS--------GFQVAS-THRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEG 137 (1070)
Q Consensus 67 ~~~~v~vvsv~G~~r~GKS~lln~l~~~~~--------gF~~~~-~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG 137 (1070)
...|..-|+|+|...+|||+|+++|++... ++.... ...--..||=+-....... .....+.|+||||
T Consensus 77 ~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~---~~~~~i~liDtPG 153 (478)
T PLN03126 77 RKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYE---TENRHYAHVDCPG 153 (478)
T ss_pred ccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEe---cCCcEEEEEECCC
Confidence 357888899999999999999999996321 111100 1112235553322211111 1234678999999
Q ss_pred ccccCCCCcchhHHHHHHHhhhhheeecCCCCCCHHHhhhhH
Q 001482 138 IDAYDQTGTYSTQIFSLAVLLSSMFIYNQMGGIDESAIDRLS 179 (1070)
Q Consensus 138 ~~~~~~~~~~d~~ifaL~~llSS~~IyN~~~~i~~~~l~~L~ 179 (1070)
...+ ....+.+++..=.-++|+.....+.....+++.
T Consensus 154 h~~f-----~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~ 190 (478)
T PLN03126 154 HADY-----VKNMITGAAQMDGAILVVSGADGPMPQTKEHIL 190 (478)
T ss_pred HHHH-----HHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHH
Confidence 5321 123355555433445666655445444444443
No 371
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=94.16 E-value=0.078 Score=54.83 Aligned_cols=57 Identities=23% Similarity=0.307 Sum_probs=39.1
Q ss_pred EEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeeccccc
Q 001482 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (1070)
Q Consensus 74 vsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~ 139 (1070)
|.++|..++|||.|++++.+.. |.-. ..| |.|.-. ...+. .+|..+.+-+.||.|..
T Consensus 4 iv~vG~~~vGKTsli~~~~~~~--f~~~--~~~-t~~~~~-~~~~~---~~~~~~~l~iwDt~G~~ 60 (178)
T cd04131 4 IVVVGDVQCGKTALLQVFAKDC--YPET--YVP-TVFENY-TASFE---IDEQRIELSLWDTSGSP 60 (178)
T ss_pred EEEECCCCCCHHHHHHHHHhCc--CCCC--cCC-ceEEEE-EEEEE---ECCEEEEEEEEECCCch
Confidence 7899999999999999999765 6422 223 444322 12221 24667889999999954
No 372
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=94.16 E-value=0.075 Score=56.97 Aligned_cols=62 Identities=16% Similarity=0.211 Sum_probs=40.3
Q ss_pred CEEEEEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeeccccc
Q 001482 70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (1070)
Q Consensus 70 ~v~vvsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~ 139 (1070)
+-.=|.|+|..++|||+|+++++... |.-. -..|.|+-.+...+. .++..+.+-++||.|..
T Consensus 12 ~~~Ki~vvG~~gvGKTsli~~~~~~~--f~~~---~~~tig~~~~~~~~~---~~~~~~~l~i~Dt~G~~ 73 (219)
T PLN03071 12 PSFKLVIVGDGGTGKTTFVKRHLTGE--FEKK---YEPTIGVEVHPLDFF---TNCGKIRFYCWDTAGQE 73 (219)
T ss_pred CceEEEEECcCCCCHHHHHHHHhhCC--CCCc---cCCccceeEEEEEEE---ECCeEEEEEEEECCCch
Confidence 33458899999999999999987654 5321 123555433322221 13445789999999964
No 373
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=94.14 E-value=0.075 Score=54.19 Aligned_cols=52 Identities=21% Similarity=0.277 Sum_probs=35.3
Q ss_pred EEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeecccc
Q 001482 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI 138 (1070)
Q Consensus 74 vsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~ 138 (1070)
|.++|+.++|||+|+|+|.+. |... -..|.|+-... +. ...+.+.++||+|.
T Consensus 2 i~~~G~~~~GKTsl~~~l~~~---~~~~---~~~t~g~~~~~--~~-----~~~~~~~i~D~~G~ 53 (167)
T cd04161 2 LLTVGLDNAGKTTLVSALQGE---IPKK---VAPTVGFTPTK--LR-----LDKYEVCIFDLGGG 53 (167)
T ss_pred EEEECCCCCCHHHHHHHHhCC---CCcc---ccCcccceEEE--EE-----ECCEEEEEEECCCc
Confidence 689999999999999999875 4221 12355543221 11 12477899999994
No 374
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=94.13 E-value=0.096 Score=53.53 Aligned_cols=54 Identities=22% Similarity=0.141 Sum_probs=36.8
Q ss_pred EEEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeeccccc
Q 001482 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (1070)
Q Consensus 73 vvsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~ 139 (1070)
=|.|+|+.++|||+|++.|.+.. |. .. ..|.|+-++.. .+.++.+.+.||+|..
T Consensus 11 kv~i~G~~~~GKTsli~~l~~~~--~~---~~-~~t~g~~~~~~-------~~~~~~~~l~Dt~G~~ 64 (168)
T cd04149 11 RILMLGLDAAGKTTILYKLKLGQ--SV---TT-IPTVGFNVETV-------TYKNVKFNVWDVGGQD 64 (168)
T ss_pred EEEEECcCCCCHHHHHHHHccCC--Cc---cc-cCCcccceEEE-------EECCEEEEEEECCCCH
Confidence 46699999999999999998654 42 11 23555543311 1235789999999964
No 375
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=94.11 E-value=5.3 Score=48.21 Aligned_cols=37 Identities=22% Similarity=0.417 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001482 900 KLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEM 936 (1070)
Q Consensus 900 ~le~~Le~er~~~~ea~~r~~~L~~ql~~~~~~l~~l 936 (1070)
.|.++++..++.+.+++...+.|....+.++..++.|
T Consensus 220 ~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL 256 (916)
T KOG0249|consen 220 RLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQL 256 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3444444444444444444444444444444444433
No 376
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=94.10 E-value=13 Score=42.28 Aligned_cols=15 Identities=33% Similarity=0.532 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHH
Q 001482 925 EVQSAQAKLDEMQQE 939 (1070)
Q Consensus 925 ql~~~~~~l~~le~e 939 (1070)
++..+++.++.|+..
T Consensus 277 Ev~~Lk~~~~~Le~~ 291 (325)
T PF08317_consen 277 EVKRLKAKVDALEKL 291 (325)
T ss_pred HHHHHHHHHHHHHHH
Confidence 355566666666654
No 377
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=94.05 E-value=13 Score=41.95 Aligned_cols=6 Identities=17% Similarity=0.285 Sum_probs=2.2
Q ss_pred HHHHHH
Q 001482 596 DWKRKY 601 (1070)
Q Consensus 596 e~k~k~ 601 (1070)
++++.+
T Consensus 74 EL~~~I 79 (312)
T smart00787 74 ELKKYI 79 (312)
T ss_pred HHHHHH
Confidence 333333
No 378
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=94.04 E-value=0.086 Score=54.72 Aligned_cols=58 Identities=21% Similarity=0.332 Sum_probs=41.5
Q ss_pred EEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeeccccc
Q 001482 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (1070)
Q Consensus 74 vsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~ 139 (1070)
|.++|..++|||.|++++++.. |.- .-..|.|+-++...+. .+|..+.+-+.||.|..
T Consensus 3 i~vlG~~~vGKTsLi~~~~~~~--f~~---~~~~T~g~~~~~~~i~---~~~~~~~l~iwDt~G~~ 60 (182)
T cd04128 3 IGLLGDAQIGKTSLMVKYVEGE--FDE---DYIQTLGVNFMEKTIS---IRGTEITFSIWDLGGQR 60 (182)
T ss_pred EEEECCCCCCHHHHHHHHHhCC--CCC---CCCCccceEEEEEEEE---ECCEEEEEEEEeCCCch
Confidence 6789999999999999998765 632 1234777655433332 24667889999999953
No 379
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=94.04 E-value=0.087 Score=54.29 Aligned_cols=64 Identities=22% Similarity=0.239 Sum_probs=44.2
Q ss_pred HHHccC--CCEEEEEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeeccccc
Q 001482 63 ALQLVK--EPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (1070)
Q Consensus 63 ~l~~~~--~~v~vvsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~ 139 (1070)
+|+.+. .+-.=|.|+|+.++|||+|++.|.+.. +.. . ..|.|+-+...++ .++.+.+.|..|-.
T Consensus 4 ~~~~~~~~~~~~~ililGl~~sGKTtll~~l~~~~--~~~---~-~pT~g~~~~~i~~-------~~~~~~~~d~gG~~ 69 (175)
T PF00025_consen 4 VLSKLKSKKKEIKILILGLDGSGKTTLLNRLKNGE--ISE---T-IPTIGFNIEEIKY-------KGYSLTIWDLGGQE 69 (175)
T ss_dssp HHHHCTTTTSEEEEEEEESTTSSHHHHHHHHHSSS--EEE---E-EEESSEEEEEEEE-------TTEEEEEEEESSSG
T ss_pred HHHHhcccCcEEEEEEECCCccchHHHHHHhhhcc--ccc---c-Ccccccccceeee-------CcEEEEEEeccccc
Confidence 444432 445557899999999999999998653 321 2 2377877776554 24678899999853
No 380
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=93.97 E-value=0.13 Score=54.33 Aligned_cols=22 Identities=27% Similarity=0.450 Sum_probs=20.2
Q ss_pred EEEeecCCCCChhHHHHHHhCC
Q 001482 73 VVSVCGRARQGKSFILNQLLGR 94 (1070)
Q Consensus 73 vvsv~G~~r~GKS~lln~l~~~ 94 (1070)
-|+|+|..++|||+|+..|.+.
T Consensus 2 ~i~~~g~~~~GKttL~~~l~~~ 23 (203)
T cd01888 2 NIGTIGHVAHGKSTLVKALSGV 23 (203)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999875
No 381
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=93.96 E-value=0.089 Score=54.75 Aligned_cols=59 Identities=22% Similarity=0.271 Sum_probs=37.2
Q ss_pred EEEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeecccccc
Q 001482 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (1070)
Q Consensus 73 vvsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~~ 140 (1070)
-|+|+|+.++|||+|+|.|.+.. |.- ...+ |.+..... ++. .+|..+.+.++||.|...
T Consensus 3 Ki~ivG~~g~GKStLl~~l~~~~--~~~--~~~~-t~~~~~~~-~~~---~~~~~~~l~i~Dt~g~~~ 61 (187)
T cd04129 3 KLVIVGDGACGKTSLLSVFTLGE--FPE--EYHP-TVFENYVT-DCR---VDGKPVQLALWDTAGQEE 61 (187)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC--CCc--ccCC-cccceEEE-EEE---ECCEEEEEEEEECCCChh
Confidence 37899999999999999998543 421 1112 33332221 221 135557788999999653
No 382
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=93.95 E-value=0.087 Score=53.95 Aligned_cols=58 Identities=19% Similarity=0.273 Sum_probs=38.0
Q ss_pred EEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeecccccc
Q 001482 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (1070)
Q Consensus 74 vsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~~ 140 (1070)
|.|+|+.++|||+|++.+++.. |.. ...|.+..++-+ ++. .+|..+.+-++||+|...
T Consensus 3 ~~i~G~~~~GKtsl~~~~~~~~--~~~--~~~~t~~~~~~~--~~~---~~~~~~~~~i~Dt~G~~~ 60 (173)
T cd04130 3 CVLVGDGAVGKTSLIVSYTTNG--YPT--EYVPTAFDNFSV--VVL---VDGKPVRLQLCDTAGQDE 60 (173)
T ss_pred EEEECCCCCCHHHHHHHHHhCC--CCC--CCCCceeeeeeE--EEE---ECCEEEEEEEEECCCChh
Confidence 6799999999999999998754 632 122322223322 222 235567889999999643
No 383
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=93.95 E-value=0.056 Score=58.64 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=21.7
Q ss_pred EEEEeecCCCCChhHHHHHHhCCC
Q 001482 72 GVVSVCGRARQGKSFILNQLLGRS 95 (1070)
Q Consensus 72 ~vvsv~G~~r~GKS~lln~l~~~~ 95 (1070)
-|++|+||.|+||||||..|.|-.
T Consensus 29 ~i~~iiGpNG~GKSTLLk~l~g~l 52 (258)
T COG1120 29 EITGILGPNGSGKSTLLKCLAGLL 52 (258)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 379999999999999999999854
No 384
>PRK05433 GTP-binding protein LepA; Provisional
Probab=93.93 E-value=0.12 Score=63.68 Aligned_cols=105 Identities=18% Similarity=0.279 Sum_probs=59.6
Q ss_pred CEEEEEeecCCCCChhHHHHHHhCCCCCccc---cCCC-----CcccceEEeeccccc--cccCCCCceeEEEeeccccc
Q 001482 70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQV---ASTH-----RPCTKGLWLWSAPLK--RTALDGTEYNLLLLDSEGID 139 (1070)
Q Consensus 70 ~v~vvsv~G~~r~GKS~lln~l~~~~~gF~~---~~~~-----~~~t~giw~~~~p~~--~~~~~g~~~~~~llDteG~~ 139 (1070)
++--|+|+|...+|||+|+++|+.....+.- +.+. .--+.||=+....+. ...++|..+.+-|+||+|..
T Consensus 6 ~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~ 85 (600)
T PRK05433 6 NIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHV 85 (600)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcH
Confidence 3445789999999999999999864322211 1110 011344444332221 11235777889999999975
Q ss_pred ccCCCCcchhHHHHHHHhhhhheeecCCCCCCHHHhhhhH
Q 001482 140 AYDQTGTYSTQIFSLAVLLSSMFIYNQMGGIDESAIDRLS 179 (1070)
Q Consensus 140 ~~~~~~~~d~~ifaL~~llSS~~IyN~~~~i~~~~l~~L~ 179 (1070)
.+. ..+.-++...=.-++||.....++...+..+.
T Consensus 86 dF~-----~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~ 120 (600)
T PRK05433 86 DFS-----YEVSRSLAACEGALLVVDASQGVEAQTLANVY 120 (600)
T ss_pred HHH-----HHHHHHHHHCCEEEEEEECCCCCCHHHHHHHH
Confidence 431 11223344433456777776666655554443
No 385
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=93.93 E-value=0.17 Score=64.07 Aligned_cols=27 Identities=44% Similarity=0.866 Sum_probs=23.8
Q ss_pred CCEEEEEeecCCCCChhHHHHHHhCCC
Q 001482 69 EPIGVVSVCGRARQGKSFILNQLLGRS 95 (1070)
Q Consensus 69 ~~v~vvsv~G~~r~GKS~lln~l~~~~ 95 (1070)
..+..|+|+|.+.+|||+|+|.|+|..
T Consensus 273 ~~~~~V~IvG~~nvGKSSL~n~l~~~~ 299 (712)
T PRK09518 273 KAVGVVAIVGRPNVGKSTLVNRILGRR 299 (712)
T ss_pred ccCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 345679999999999999999999875
No 386
>COG0218 Predicted GTPase [General function prediction only]
Probab=93.92 E-value=0.25 Score=51.08 Aligned_cols=104 Identities=16% Similarity=0.201 Sum_probs=59.6
Q ss_pred CEEEEEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeecccccccCCCCcc-h
Q 001482 70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYDQTGTY-S 148 (1070)
Q Consensus 70 ~v~vvsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~~~~~~~~~-d 148 (1070)
...=|+.+|....|||+|+|.|+|...--.++.+.. -|.=|=.+. .++ .+.|+|.||.|-..-.... +
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPG-rTq~iNff~-------~~~---~~~lVDlPGYGyAkv~k~~~e 91 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPG-RTQLINFFE-------VDD---ELRLVDLPGYGYAKVPKEVKE 91 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCC-ccceeEEEE-------ecC---cEEEEeCCCcccccCCHHHHH
Confidence 455689999999999999999999753233333322 233332221 111 2678999999743322211 1
Q ss_pred hH---HHHH----HHhhhhheeecCCCCCCHHHhhhhHHHHHh
Q 001482 149 TQ---IFSL----AVLLSSMFIYNQMGGIDESAIDRLSLVTQM 184 (1070)
Q Consensus 149 ~~---ifaL----~~llSS~~IyN~~~~i~~~~l~~L~~~~~~ 184 (1070)
.| |.-. +.|---+++.-....+.+.|.+.+.++.++
T Consensus 92 ~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~ 134 (200)
T COG0218 92 KWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLEL 134 (200)
T ss_pred HHHHHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHc
Confidence 11 2111 123334566667777888777666655433
No 387
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=93.90 E-value=0.09 Score=57.76 Aligned_cols=58 Identities=29% Similarity=0.323 Sum_probs=38.1
Q ss_pred EEEEEeecCCCCChhHHHHHHhCCCCCccccC-CCCcccceEEeeccccccccCCCCceeEEEeeccccc
Q 001482 71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVAS-THRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (1070)
Q Consensus 71 v~vvsv~G~~r~GKS~lln~l~~~~~gF~~~~-~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~ 139 (1070)
.+=|+++|++..|||+|||.|.|..+-+.--+ |+-.+--|+.-| +| ..+=+||+||+-
T Consensus 63 da~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y---------~g--a~IQild~Pgii 121 (365)
T COG1163 63 DATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEY---------KG--AQIQLLDLPGII 121 (365)
T ss_pred CeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEee---------cC--ceEEEEcCcccc
Confidence 45688999999999999999999753221111 222334455533 23 457788999874
No 388
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=93.84 E-value=0.086 Score=56.19 Aligned_cols=62 Identities=27% Similarity=0.338 Sum_probs=40.3
Q ss_pred EEEEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeeccccccc
Q 001482 72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAY 141 (1070)
Q Consensus 72 ~vvsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~~~ 141 (1070)
.=|.|+|+.++|||+|+|.|.+.. |.-+ .+.|.|.-....-+ .+++..+.+.++||.|...+
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~--~~~~---~~~t~~~~~~~~~~---~~~~~~~~~~~~Dt~gq~~~ 67 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDE--FPEG---YPPTIGNLDPAKTI---EPYRRNIKLQLWDTAGQEEY 67 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCc--Cccc---CCCceeeeeEEEEE---EeCCCEEEEEeecCCCHHHH
Confidence 457899999999999999999887 4321 22344443332211 12223567889999997543
No 389
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=93.77 E-value=0.075 Score=61.37 Aligned_cols=58 Identities=28% Similarity=0.397 Sum_probs=37.8
Q ss_pred EEEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeeccccc
Q 001482 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (1070)
Q Consensus 73 vvsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~ 139 (1070)
=|+|+|++..|||.|||.|..... .+-+....+|...-= .+| .++| +.|.|.||-|+.
T Consensus 270 ~iaIvGrPNvGKSSLlNaL~~~dr--sIVSpv~GTTRDaie--a~v---~~~G--~~v~L~DTAGiR 327 (531)
T KOG1191|consen 270 QIAIVGRPNVGKSSLLNALSREDR--SIVSPVPGTTRDAIE--AQV---TVNG--VPVRLSDTAGIR 327 (531)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCc--eEeCCCCCcchhhhe--eEe---ecCC--eEEEEEeccccc
Confidence 478999999999999999998752 222222223333210 111 2456 678999999986
No 390
>COG1160 Predicted GTPases [General function prediction only]
Probab=93.77 E-value=0.26 Score=56.97 Aligned_cols=136 Identities=19% Similarity=0.282 Sum_probs=73.9
Q ss_pred CCCCCeeEEEeCCCCceeeCHHHHHHHH-cc-----C-CCEEEEEeecCCCCChhHHHHHHhCCCCC--ccccCCCCccc
Q 001482 38 GPARPIRLVYCDEKGKFRMDPEAVAALQ-LV-----K-EPIGVVSVCGRARQGKSFILNQLLGRSSG--FQVASTHRPCT 108 (1070)
Q Consensus 38 ~~~~pi~lv~~d~~~~~~~~~eal~~l~-~~-----~-~~v~vvsv~G~~r~GKS~lln~l~~~~~g--F~~~~~~~~~t 108 (1070)
+.+.|+++--....|--.|-++.++.|. .. + ....=|+|+|.+..|||+|+|.|+|.... ....++..-.-
T Consensus 138 G~g~~~~ISA~Hg~Gi~dLld~v~~~l~~~e~~~~~~~~~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I 217 (444)
T COG1160 138 GFGEPVPISAEHGRGIGDLLDAVLELLPPDEEEEEEEETDPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSI 217 (444)
T ss_pred CCCCceEeehhhccCHHHHHHHHHhhcCCcccccccccCCceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccce
Confidence 4455665443333343344455555541 11 1 13567999999999999999999997521 22222222222
Q ss_pred ceEEeeccccccccCCCCceeEEEeecccccccCCC----Ccc--hhHHHHHHHhhhhheeecCCCCCCHHHhhhhHHHH
Q 001482 109 KGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYDQT----GTY--STQIFSLAVLLSSMFIYNQMGGIDESAIDRLSLVT 182 (1070)
Q Consensus 109 ~giw~~~~p~~~~~~~g~~~~~~llDteG~~~~~~~----~~~--d~~ifaL~~llSS~~IyN~~~~i~~~~l~~L~~~~ 182 (1070)
..-|-| +|. .+.|+||=|+.-..+- ..+ --.+=|+.-.=.-++|.+-...+.++++.-+.++.
T Consensus 218 ~~~~e~---------~~~--~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~ 286 (444)
T COG1160 218 DIEFER---------DGR--KYVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDLRIAGLIE 286 (444)
T ss_pred eeeEEE---------CCe--EEEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHHHHHHHHH
Confidence 333444 243 5788999998632221 111 12233333322234556666677777777666655
Q ss_pred Hh
Q 001482 183 QM 184 (1070)
Q Consensus 183 ~~ 184 (1070)
+.
T Consensus 287 ~~ 288 (444)
T COG1160 287 EA 288 (444)
T ss_pred Hc
Confidence 44
No 391
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=93.76 E-value=0.11 Score=53.56 Aligned_cols=57 Identities=25% Similarity=0.300 Sum_probs=37.5
Q ss_pred EEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeeccccc
Q 001482 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (1070)
Q Consensus 74 vsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~ 139 (1070)
|.|+|..++|||+|+.++++.. |.- ...|.+...+.+ .+ ..+|..+.+.++||+|..
T Consensus 4 i~iiG~~~vGKSsli~~~~~~~--f~~--~~~~t~~~~~~~--~~---~~~~~~~~l~i~Dt~G~~ 60 (174)
T cd01871 4 CVVVGDGAVGKTCLLISYTTNA--FPG--EYIPTVFDNYSA--NV---MVDGKPVNLGLWDTAGQE 60 (174)
T ss_pred EEEECCCCCCHHHHHHHHhcCC--CCC--cCCCcceeeeEE--EE---EECCEEEEEEEEECCCch
Confidence 6799999999999999998754 531 112222222221 11 135667889999999954
No 392
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=93.74 E-value=18 Score=43.20 Aligned_cols=16 Identities=25% Similarity=0.356 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 001482 642 SAQEEVEEWKRKYGVA 657 (1070)
Q Consensus 642 ~lq~el~e~k~~le~e 657 (1070)
.++.+++.++..+..+
T Consensus 286 ~l~~~i~~l~~~l~~e 301 (444)
T TIGR03017 286 RAQAEINSLKSQLNAE 301 (444)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444333
No 393
>PRK12736 elongation factor Tu; Reviewed
Probab=93.65 E-value=0.13 Score=60.33 Aligned_cols=106 Identities=12% Similarity=0.162 Sum_probs=55.9
Q ss_pred CCCEEEEEeecCCCCChhHHHHHHhCCCC-----Cc---cccC-CCCcccceEEeeccccccccCCCCceeEEEeecccc
Q 001482 68 KEPIGVVSVCGRARQGKSFILNQLLGRSS-----GF---QVAS-THRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI 138 (1070)
Q Consensus 68 ~~~v~vvsv~G~~r~GKS~lln~l~~~~~-----gF---~~~~-~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~ 138 (1070)
..|..-|+|+|...+|||+|++.|++... .| .+.. ....-..|+=+-....... .....+.|+||||.
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~---~~~~~i~~iDtPGh 85 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYE---TEKRHYAHVDCPGH 85 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEec---CCCcEEEEEECCCH
Confidence 34566699999999999999999987420 11 1000 0001122332222111111 12346789999994
Q ss_pred cccCCCCcchhHHHHHHHhhhhheeecCCCCCCHHHhhhhHHH
Q 001482 139 DAYDQTGTYSTQIFSLAVLLSSMFIYNQMGGIDESAIDRLSLV 181 (1070)
Q Consensus 139 ~~~~~~~~~d~~ifaL~~llSS~~IyN~~~~i~~~~l~~L~~~ 181 (1070)
..+ ....+.+++..=.-++|+.....+...+..++.++
T Consensus 86 ~~f-----~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~ 123 (394)
T PRK12736 86 ADY-----VKNMITGAAQMDGAILVVAATDGPMPQTREHILLA 123 (394)
T ss_pred HHH-----HHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHH
Confidence 311 12334444443344566666555666555555543
No 394
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=93.59 E-value=0.11 Score=55.47 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=21.5
Q ss_pred EEEeecCCCCChhHHHHHHhCCC
Q 001482 73 VVSVCGRARQGKSFILNQLLGRS 95 (1070)
Q Consensus 73 vvsv~G~~r~GKS~lln~l~~~~ 95 (1070)
+++|+|+.|+||||||+.|.|..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 28 FVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999864
No 395
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=93.58 E-value=0.12 Score=54.07 Aligned_cols=59 Identities=25% Similarity=0.284 Sum_probs=40.7
Q ss_pred EEEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeeccccc
Q 001482 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (1070)
Q Consensus 73 vvsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~ 139 (1070)
=|.|+|..++|||+|+..+.+.. |.- ..+.|.|+-+....+. .+|..+.+-|+||.|..
T Consensus 8 KivviG~~~vGKTsll~~~~~~~--~~~---~~~~t~~~~~~~~~i~---~~~~~~~l~iwDt~G~~ 66 (189)
T cd04121 8 KFLLVGDSDVGKGEILASLQDGS--TES---PYGYNMGIDYKTTTIL---LDGRRVKLQLWDTSGQG 66 (189)
T ss_pred EEEEECCCCCCHHHHHHHHHcCC--CCC---CCCCcceeEEEEEEEE---ECCEEEEEEEEeCCCcH
Confidence 36699999999999999998754 531 1123556544433332 25667889999999964
No 396
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.57 E-value=0.11 Score=56.61 Aligned_cols=24 Identities=25% Similarity=0.454 Sum_probs=21.9
Q ss_pred EEEEeecCCCCChhHHHHHHhCCC
Q 001482 72 GVVSVCGRARQGKSFILNQLLGRS 95 (1070)
Q Consensus 72 ~vvsv~G~~r~GKS~lln~l~~~~ 95 (1070)
-+++|+|+.|+||||||+.|.|..
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 29 ELVALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 379999999999999999999864
No 397
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=93.52 E-value=0.053 Score=56.42 Aligned_cols=32 Identities=31% Similarity=0.397 Sum_probs=24.3
Q ss_pred HHHccCCCEE---EEEeecCCCCChhHHHHHHhCC
Q 001482 63 ALQLVKEPIG---VVSVCGRARQGKSFILNQLLGR 94 (1070)
Q Consensus 63 ~l~~~~~~v~---vvsv~G~~r~GKS~lln~l~~~ 94 (1070)
.|+.++-.|. ||+|+||.||||||||..|-+-
T Consensus 17 VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~L 51 (240)
T COG1126 17 VLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGL 51 (240)
T ss_pred EecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3444443333 8999999999999999998764
No 398
>PLN02318 phosphoribulokinase/uridine kinase
Probab=93.51 E-value=0.1 Score=62.55 Aligned_cols=53 Identities=21% Similarity=0.242 Sum_probs=41.2
Q ss_pred CeeEEEeCC----CCceeeCHHHHHHHHccCCCEEEEEeecCCCCChhHHHHHHhCC
Q 001482 42 PIRLVYCDE----KGKFRMDPEAVAALQLVKEPIGVVSVCGRARQGKSFILNQLLGR 94 (1070)
Q Consensus 42 pi~lv~~d~----~~~~~~~~eal~~l~~~~~~v~vvsv~G~~r~GKS~lln~l~~~ 94 (1070)
...++...+ +..|-+--.|++.|...+.++.||+|+|+.|+|||||++.|.+.
T Consensus 32 ~~~i~~~~~~~sfd~g~~~~ira~qlL~~~~~~riIIGIaGpSGSGKTTLAk~Lagl 88 (656)
T PLN02318 32 RYEIVPIQDPLSFEKGFFVVIRACQLLAQKNDGIILVGVAGPSGAGKTVFTEKVLNF 88 (656)
T ss_pred ceEEEeCCCccccccchhhhhHHHHHHHhcCCCeEEEEEECCCCCcHHHHHHHHHhh
Confidence 445554433 24566777788888776778899999999999999999999865
No 399
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.44 E-value=0.1 Score=50.48 Aligned_cols=59 Identities=27% Similarity=0.379 Sum_probs=45.7
Q ss_pred EEEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeeccccc
Q 001482 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (1070)
Q Consensus 73 vvsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~ 139 (1070)
-+-|+|+.+||||.||-++.... |.- ..++|.||-+-+.-+ ...|+.+.+-+.||-|..
T Consensus 11 Kfl~iG~aGtGKSCLLh~Fie~k--fkD---dssHTiGveFgSrIi---nVGgK~vKLQIWDTAGQE 69 (214)
T KOG0086|consen 11 KFLVIGSAGTGKSCLLHQFIENK--FKD---DSSHTIGVEFGSRIV---NVGGKTVKLQIWDTAGQE 69 (214)
T ss_pred eeEEeccCCCChhHHHHHHHHhh--hcc---cccceeeeeecceee---eecCcEEEEEEeecccHH
Confidence 35689999999999999998766 533 236799998877654 345777888999999954
No 400
>PRK12735 elongation factor Tu; Reviewed
Probab=93.42 E-value=0.16 Score=59.54 Aligned_cols=26 Identities=19% Similarity=0.265 Sum_probs=23.3
Q ss_pred CCEEEEEeecCCCCChhHHHHHHhCC
Q 001482 69 EPIGVVSVCGRARQGKSFILNQLLGR 94 (1070)
Q Consensus 69 ~~v~vvsv~G~~r~GKS~lln~l~~~ 94 (1070)
.|...|+|+|...+|||+|+|.|++.
T Consensus 10 ~~~~~i~iiGhvd~GKSTL~~~L~~~ 35 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITKV 35 (396)
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHHh
Confidence 56778999999999999999999963
No 401
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=93.41 E-value=0.054 Score=51.85 Aligned_cols=22 Identities=32% Similarity=0.511 Sum_probs=20.4
Q ss_pred EEEeecCCCCChhHHHHHHhCC
Q 001482 73 VVSVCGRARQGKSFILNQLLGR 94 (1070)
Q Consensus 73 vvsv~G~~r~GKS~lln~l~~~ 94 (1070)
||.|+|+++|||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999864
No 402
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=93.38 E-value=0.1 Score=54.06 Aligned_cols=53 Identities=25% Similarity=0.292 Sum_probs=36.1
Q ss_pred EEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeeccccc
Q 001482 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (1070)
Q Consensus 74 vsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~ 139 (1070)
|.++|+.++|||+|++++.... |. +..| |.|.-.. ++ ++..+.+.|.||+|..
T Consensus 20 v~lvG~~~vGKTsli~~~~~~~--~~---~~~~-T~~~~~~--~~-----~~~~~~~~l~D~~G~~ 72 (182)
T PTZ00133 20 ILMVGLDAAGKTTILYKLKLGE--VV---TTIP-TIGFNVE--TV-----EYKNLKFTMWDVGGQD 72 (182)
T ss_pred EEEEcCCCCCHHHHHHHHhcCC--cc---ccCC-ccccceE--EE-----EECCEEEEEEECCCCH
Confidence 7788999999999999997543 42 1223 5565433 11 1235789999999953
No 403
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=93.37 E-value=0.13 Score=53.02 Aligned_cols=57 Identities=25% Similarity=0.296 Sum_probs=38.4
Q ss_pred EEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeeccccc
Q 001482 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (1070)
Q Consensus 74 vsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~ 139 (1070)
|.|+|..++|||+|++++.+.. |.- ...| |.|.-+... + ..+|..+.+.++||.|..
T Consensus 4 i~vvG~~~vGKTsl~~~~~~~~--f~~--~~~p-t~~~~~~~~-~---~~~~~~~~l~i~Dt~G~~ 60 (175)
T cd01874 4 CVVVGDGAVGKTCLLISYTTNK--FPS--EYVP-TVFDNYAVT-V---MIGGEPYTLGLFDTAGQE 60 (175)
T ss_pred EEEECCCCCCHHHHHHHHHcCC--CCC--CCCC-ceeeeeEEE-E---EECCEEEEEEEEECCCcc
Confidence 7899999999999999999765 631 1222 444322211 1 124566889999999964
No 404
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=93.37 E-value=0.3 Score=50.68 Aligned_cols=58 Identities=24% Similarity=0.302 Sum_probs=39.1
Q ss_pred EEEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeeccccc
Q 001482 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (1070)
Q Consensus 73 vvsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~ 139 (1070)
=|.|+|..++|||.|++++++.. |.- ...| |.|.-. ...+ ..+|..+.+-+.||.|..
T Consensus 7 KivvvGd~~vGKTsli~~~~~~~--f~~--~~~p-T~~~~~-~~~~---~~~~~~~~l~iwDtaG~e 64 (182)
T cd04172 7 KIVVVGDSQCGKTALLHVFAKDC--FPE--NYVP-TVFENY-TASF---EIDTQRIELSLWDTSGSP 64 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC--CCC--ccCC-ceeeee-EEEE---EECCEEEEEEEEECCCch
Confidence 38899999999999999999765 632 1122 334322 1222 235667889999999953
No 405
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=93.31 E-value=0.088 Score=55.85 Aligned_cols=24 Identities=21% Similarity=0.335 Sum_probs=21.9
Q ss_pred EEEEeecCCCCChhHHHHHHhCCC
Q 001482 72 GVVSVCGRARQGKSFILNQLLGRS 95 (1070)
Q Consensus 72 ~vvsv~G~~r~GKS~lln~l~~~~ 95 (1070)
-+++|+|+.|+||||||+.|.|..
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~Gl~ 50 (208)
T cd03268 27 EIYGFLGPNGAGKTTTMKIILGLI 50 (208)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc
Confidence 479999999999999999999864
No 406
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=93.27 E-value=0.15 Score=51.49 Aligned_cols=53 Identities=21% Similarity=0.213 Sum_probs=35.3
Q ss_pred EEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeeccccc
Q 001482 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (1070)
Q Consensus 74 vsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~ 139 (1070)
|.++|..++|||+|++.+.... |.- . ..|.|+-+.. + .+..+.+.|.||+|.+
T Consensus 3 v~~~G~~~~GKTsli~~l~~~~--~~~---~-~pt~g~~~~~--~-----~~~~~~~~l~D~~G~~ 55 (159)
T cd04150 3 ILMVGLDAAGKTTILYKLKLGE--IVT---T-IPTIGFNVET--V-----EYKNISFTVWDVGGQD 55 (159)
T ss_pred EEEECCCCCCHHHHHHHHhcCC--Ccc---c-CCCCCcceEE--E-----EECCEEEEEEECCCCH
Confidence 6789999999999999996543 531 1 2345542211 1 1234788999999964
No 407
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=93.26 E-value=0.079 Score=59.78 Aligned_cols=36 Identities=22% Similarity=0.348 Sum_probs=28.5
Q ss_pred EEEeecCCCCChhHHHHHHhCCCCCccccCCCCcccce-EEeecccc
Q 001482 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKG-LWLWSAPL 118 (1070)
Q Consensus 73 vvsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~g-iw~~~~p~ 118 (1070)
+++|+||.|+||||||+.|.|.. +.+.| ||+++.++
T Consensus 30 i~~l~G~NGaGKTTLl~~l~Gl~----------~~~~G~i~i~g~~~ 66 (301)
T TIGR03522 30 IVGFLGPNGAGKSTTMKIITGYL----------PPDSGSVQVCGEDV 66 (301)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC----------CCCceEEEECCEEc
Confidence 79999999999999999999864 12334 77777654
No 408
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.26 E-value=15 Score=40.04 Aligned_cols=38 Identities=21% Similarity=0.275 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001482 849 TDLTNEVNRIRESELEALSKVALLEARVEEREKEIESL 886 (1070)
Q Consensus 849 ~~l~~el~~l~~~~~~~~~~~~~le~~v~ele~eie~L 886 (1070)
..++..+..|.....+....+..+..+......+...+
T Consensus 179 ~e~e~~~~~L~~qk~e~~~l~~~~aa~~a~~~~e~a~l 216 (265)
T COG3883 179 NELETQLNSLNSQKAEKNALIAALAAKEASALGEKAAL 216 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 33333333333333333333334444444444444444
No 409
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=93.17 E-value=0.18 Score=54.13 Aligned_cols=57 Identities=19% Similarity=0.300 Sum_probs=39.2
Q ss_pred EEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeeccccc
Q 001482 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (1070)
Q Consensus 74 vsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~ 139 (1070)
|.|+|..++|||.|++.+.+.. |.- ...|+....|.+ ++. .+|..+.+-|.||.|..
T Consensus 4 IvvvGd~~vGKTsLi~~~~~~~--f~~--~y~pTi~~~~~~--~~~---~~~~~v~L~iwDt~G~e 60 (222)
T cd04173 4 IVVVGDAECGKTALLQVFAKDA--YPG--SYVPTVFENYTA--SFE---IDKRRIELNMWDTSGSS 60 (222)
T ss_pred EEEECCCCCCHHHHHHHHHcCC--CCC--ccCCccccceEE--EEE---ECCEEEEEEEEeCCCcH
Confidence 5699999999999999999765 642 222333223322 232 35777889999999954
No 410
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=93.17 E-value=0.022 Score=56.02 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=21.7
Q ss_pred EEEEEeecCCCCChhHHHHHHhCC
Q 001482 71 IGVVSVCGRARQGKSFILNQLLGR 94 (1070)
Q Consensus 71 v~vvsv~G~~r~GKS~lln~l~~~ 94 (1070)
+-+|+|+|+-+||||+|.|.|...
T Consensus 8 ~K~VailG~ESsGKStLv~kLA~~ 31 (187)
T COG3172 8 VKTVAILGGESSGKSTLVNKLANI 31 (187)
T ss_pred heeeeeecCcccChHHHHHHHHHH
Confidence 568999999999999999999754
No 411
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=93.13 E-value=0.12 Score=56.47 Aligned_cols=89 Identities=20% Similarity=0.227 Sum_probs=56.7
Q ss_pred CCCEEEEEeecCCCCChhHHHHHHhCCC-----CCccccCCCCcccceEEeeccccccccCCCCceeEEEeecccccccC
Q 001482 68 KEPIGVVSVCGRARQGKSFILNQLLGRS-----SGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYD 142 (1070)
Q Consensus 68 ~~~v~vvsv~G~~r~GKS~lln~l~~~~-----~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~~~~ 142 (1070)
..++.||||+|-..+|||+|+|.|.+.. .-|. |.+|++.-.- .|+| ..++|-||=||-+
T Consensus 175 ~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFA---TLDpT~h~a~---------Lpsg--~~vlltDTvGFis-- 238 (410)
T KOG0410|consen 175 GESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFA---TLDPTLHSAH---------LPSG--NFVLLTDTVGFIS-- 238 (410)
T ss_pred cCCCceEEEEeecCccHHHHHHHHHhhhcCccchhhe---eccchhhhcc---------CCCC--cEEEEeechhhhh--
Confidence 3588899999999999999999998642 2353 4455554443 3556 4689999999853
Q ss_pred CCCcchhHHHH----HHHhhhhheeecCCCCCCHHH
Q 001482 143 QTGTYSTQIFS----LAVLLSSMFIYNQMGGIDESA 174 (1070)
Q Consensus 143 ~~~~~d~~ifa----L~~llSS~~IyN~~~~i~~~~ 174 (1070)
.=+. .-|-| |.=.-+|-+|.++...-...+
T Consensus 239 dLP~--~LvaAF~ATLeeVaeadlllHvvDiShP~a 272 (410)
T KOG0410|consen 239 DLPI--QLVAAFQATLEEVAEADLLLHVVDISHPNA 272 (410)
T ss_pred hCcH--HHHHHHHHHHHHHhhcceEEEEeecCCccH
Confidence 1111 12233 333346777888765444333
No 412
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=93.06 E-value=0.13 Score=58.15 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=21.1
Q ss_pred EEEeecCCCCChhHHHHHHhCCC
Q 001482 73 VVSVCGRARQGKSFILNQLLGRS 95 (1070)
Q Consensus 73 vvsv~G~~r~GKS~lln~l~~~~ 95 (1070)
++.++||.|+||||||+.|.|--
T Consensus 31 f~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 31 FVVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999999864
No 413
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=93.05 E-value=0.15 Score=51.55 Aligned_cols=56 Identities=23% Similarity=0.374 Sum_probs=37.3
Q ss_pred EEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeeccccc
Q 001482 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (1070)
Q Consensus 74 vsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~ 139 (1070)
|.|+|+.++|||+|++.+++.. |.-. .+.|.|-+. ..+ ..+|..+.+.+.||.|..
T Consensus 3 i~vvG~~gvGKTsli~~~~~~~--f~~~---~~~~~~~~~--~~i---~~~~~~~~l~i~D~~g~~ 58 (158)
T cd04103 3 LGIVGNLQSGKSALVHRYLTGS--YVQL---ESPEGGRFK--KEV---LVDGQSHLLLIRDEGGAP 58 (158)
T ss_pred EEEECCCCCcHHHHHHHHHhCC--CCCC---CCCCccceE--EEE---EECCEEEEEEEEECCCCC
Confidence 6899999999999999887654 5321 122444332 112 125666788999999963
No 414
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=92.96 E-value=0.24 Score=56.49 Aligned_cols=112 Identities=18% Similarity=0.155 Sum_probs=62.6
Q ss_pred CCCEEEEEeecCCCCChhHHHHHHhCCC--CCcccc-------C-CC-CcccceEEeeccccccccCCCCceeEEE-eec
Q 001482 68 KEPIGVVSVCGRARQGKSFILNQLLGRS--SGFQVA-------S-TH-RPCTKGLWLWSAPLKRTALDGTEYNLLL-LDS 135 (1070)
Q Consensus 68 ~~~v~vvsv~G~~r~GKS~lln~l~~~~--~gF~~~-------~-~~-~~~t~giw~~~~p~~~~~~~g~~~~~~l-lDt 135 (1070)
..+.++|-|+||..||||||.++|++.. .||.++ . .. -|.+.+.-.-..|+... ....-+...| =++
T Consensus 70 ~~~~~~vmvvG~vDSGKSTLt~~LaN~~l~rG~~v~iiDaDvGQ~ei~pPg~ISL~~~~s~~~~L-~~l~~~~~~FvG~i 148 (398)
T COG1341 70 AGKVGVVMVVGPVDSGKSTLTTYLANKLLARGRKVAIIDADVGQSEIGPPGFISLAFPESPVISL-SELEPFTLYFVGSI 148 (398)
T ss_pred ccCCcEEEEECCcCcCHHHHHHHHHHHHhhcCceEEEEeCCCCCcccCCCceEEeecccCCCCCH-HHcCccceEEEecc
Confidence 3578899999999999999999998764 466443 1 11 12233332222222110 0111122222 222
Q ss_pred ccccccCCCCcchhHHHHHHHhhhhheeecCCCCCCH-HHhhhhHH
Q 001482 136 EGIDAYDQTGTYSTQIFSLAVLLSSMFIYNQMGGIDE-SAIDRLSL 180 (1070)
Q Consensus 136 eG~~~~~~~~~~d~~ifaL~~llSS~~IyN~~~~i~~-~~l~~L~~ 180 (1070)
...+...+--.--++++.++.=.+-+.|.|+.|-|.- ..++.+.-
T Consensus 149 sP~~~~~~~i~~v~rL~~~a~~~~~~ilIdT~GWi~G~~g~elk~~ 194 (398)
T COG1341 149 SPQGFPGRYIAGVARLVDLAKKEADFILIDTDGWIKGWGGLELKRA 194 (398)
T ss_pred CCCCChHHHHHHHHHHHHHhhccCCEEEEcCCCceeCchHHHHHHH
Confidence 2211111111113678888887777889999998876 77776543
No 415
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=92.92 E-value=35 Score=43.42 Aligned_cols=18 Identities=28% Similarity=0.362 Sum_probs=16.2
Q ss_pred EeecCCCCChhHHHHHHh
Q 001482 75 SVCGRARQGKSFILNQLL 92 (1070)
Q Consensus 75 sv~G~~r~GKS~lln~l~ 92 (1070)
=|+||.|||||++.+.+.
T Consensus 46 mIiGpNGSGKSSiVcAIc 63 (1072)
T KOG0979|consen 46 MIIGPNGSGKSSIVCAIC 63 (1072)
T ss_pred eEECCCCCCchHHHHHHH
Confidence 369999999999999985
No 416
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.91 E-value=0.096 Score=57.04 Aligned_cols=23 Identities=17% Similarity=0.315 Sum_probs=21.4
Q ss_pred EEEeecCCCCChhHHHHHHhCCC
Q 001482 73 VVSVCGRARQGKSFILNQLLGRS 95 (1070)
Q Consensus 73 vvsv~G~~r~GKS~lln~l~~~~ 95 (1070)
+|+|+|+.|+||||||+.|+|..
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl~ 53 (241)
T PRK14250 31 IYTIVGPSGAGKSTLIKLINRLI 53 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999864
No 417
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=92.90 E-value=0.081 Score=52.18 Aligned_cols=22 Identities=32% Similarity=0.555 Sum_probs=20.2
Q ss_pred EEEeecCCCCChhHHHHHHhCC
Q 001482 73 VVSVCGRARQGKSFILNQLLGR 94 (1070)
Q Consensus 73 vvsv~G~~r~GKS~lln~l~~~ 94 (1070)
+|.|+||.++|||+|++.|.+.
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhc
Confidence 4789999999999999999976
No 418
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=92.88 E-value=0.083 Score=59.55 Aligned_cols=34 Identities=26% Similarity=0.243 Sum_probs=27.0
Q ss_pred HHHHHHcc---CCCEEEEEeecCCCCChhHHHHHHhC
Q 001482 60 AVAALQLV---KEPIGVVSVCGRARQGKSFILNQLLG 93 (1070)
Q Consensus 60 al~~l~~~---~~~v~vvsv~G~~r~GKS~lln~l~~ 93 (1070)
+..+|..+ ..+-.||+|+|+.++|||+|++.|.+
T Consensus 20 ~~~~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~ 56 (300)
T TIGR00750 20 AKQLLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGM 56 (300)
T ss_pred HHHHHHhCCcccCCceEEEEECCCCCCHHHHHHHHHH
Confidence 55556554 35677999999999999999999875
No 419
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=92.86 E-value=0.21 Score=61.46 Aligned_cols=23 Identities=26% Similarity=0.587 Sum_probs=21.2
Q ss_pred EEEeecCCCCChhHHHHHHhCCC
Q 001482 73 VVSVCGRARQGKSFILNQLLGRS 95 (1070)
Q Consensus 73 vvsv~G~~r~GKS~lln~l~~~~ 95 (1070)
+|+++|...+|||+|+|.|.|..
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~~ 24 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIA 24 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCcc
Confidence 79999999999999999999753
No 420
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=92.86 E-value=0.081 Score=53.54 Aligned_cols=22 Identities=27% Similarity=0.516 Sum_probs=20.0
Q ss_pred EEEeecCCCCChhHHHHHHhCC
Q 001482 73 VVSVCGRARQGKSFILNQLLGR 94 (1070)
Q Consensus 73 vvsv~G~~r~GKS~lln~l~~~ 94 (1070)
-|.++|..++|||+|+|.|.|.
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~ 24 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGN 24 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 3889999999999999999865
No 421
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=92.84 E-value=0.075 Score=52.10 Aligned_cols=23 Identities=35% Similarity=0.546 Sum_probs=21.6
Q ss_pred EEEeecCCCCChhHHHHHHhCCC
Q 001482 73 VVSVCGRARQGKSFILNQLLGRS 95 (1070)
Q Consensus 73 vvsv~G~~r~GKS~lln~l~~~~ 95 (1070)
+++|+|+.++|||+|++.|+|..
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEEccCCCccccceeeecccc
Confidence 78999999999999999999875
No 422
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=92.80 E-value=0.35 Score=61.09 Aligned_cols=26 Identities=12% Similarity=0.178 Sum_probs=22.6
Q ss_pred CCEEEEEeecCCCCChhHHHHHHhCC
Q 001482 69 EPIGVVSVCGRARQGKSFILNQLLGR 94 (1070)
Q Consensus 69 ~~v~vvsv~G~~r~GKS~lln~l~~~ 94 (1070)
..|--|+|+|...+|||||.|.|++.
T Consensus 8 ~~irni~iiG~~~~GKsTL~~~ll~~ 33 (689)
T TIGR00484 8 NRFRNIGISAHIDAGKTTTTERILFY 33 (689)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHh
Confidence 35678999999999999999999853
No 423
>COG2262 HflX GTPases [General function prediction only]
Probab=92.78 E-value=0.14 Score=58.24 Aligned_cols=100 Identities=23% Similarity=0.336 Sum_probs=66.1
Q ss_pred CCEEEEEeecCCCCChhHHHHHHhCCC-----CCccccCCCCcccceEEeeccccccccCCCCceeEEEeecccccccCC
Q 001482 69 EPIGVVSVCGRARQGKSFILNQLLGRS-----SGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYDQ 143 (1070)
Q Consensus 69 ~~v~vvsv~G~~r~GKS~lln~l~~~~-----~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~~~~~ 143 (1070)
.++-.||++|-+..|||+|+|.|.|.. .-| .|.+|+|+-|-++. | ..++|=||=||= +.
T Consensus 190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LF---ATLdpttR~~~l~~---------g--~~vlLtDTVGFI--~~ 253 (411)
T COG2262 190 SGIPLVALVGYTNAGKSTLFNALTGADVYVADQLF---ATLDPTTRRIELGD---------G--RKVLLTDTVGFI--RD 253 (411)
T ss_pred cCCCeEEEEeeccccHHHHHHHHhccCeecccccc---ccccCceeEEEeCC---------C--ceEEEecCccCc--cc
Confidence 588899999999999999999999753 235 46778888888763 2 358899999973 11
Q ss_pred CCcchhHHHHHHHhhh----hheeecCCCCCCHHHhhhhHHHHHhhh
Q 001482 144 TGTYSTQIFSLAVLLS----SMFIYNQMGGIDESAIDRLSLVTQMTK 186 (1070)
Q Consensus 144 ~~~~d~~ifaL~~llS----S~~IyN~~~~i~~~~l~~L~~~~~~~~ 186 (1070)
=++ .-+-|+-+-|. +=+|..+...-+.....++..+.++-.
T Consensus 254 LP~--~LV~AFksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~ 298 (411)
T COG2262 254 LPH--PLVEAFKSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLA 298 (411)
T ss_pred CCh--HHHHHHHHHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHH
Confidence 111 12223322233 235666666666666667766665533
No 424
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=92.77 E-value=18 Score=43.07 Aligned_cols=15 Identities=27% Similarity=0.324 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHH
Q 001482 872 LEARVEEREKEIESL 886 (1070)
Q Consensus 872 le~~v~ele~eie~L 886 (1070)
|...+.+.+.++..+
T Consensus 243 L~Eq~~eK~~e~~rl 257 (861)
T KOG1899|consen 243 LREQRSEKNDEEMRL 257 (861)
T ss_pred HHHHHhhhhhHHHHH
Confidence 333444444444444
No 425
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=92.68 E-value=0.17 Score=52.05 Aligned_cols=55 Identities=20% Similarity=0.132 Sum_probs=37.2
Q ss_pred EEEEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeeccccc
Q 001482 72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (1070)
Q Consensus 72 ~vvsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~ 139 (1070)
.-|.++|+.++|||+|+++|.... |. + . ..|.|+-+.... ...+.+.|+||+|..
T Consensus 14 ~ki~l~G~~~~GKTsL~~~~~~~~--~~--~-~-~~t~~~~~~~~~-------~~~~~l~l~D~~G~~ 68 (175)
T smart00177 14 MRILMVGLDAAGKTTILYKLKLGE--SV--T-T-IPTIGFNVETVT-------YKNISFTVWDVGGQD 68 (175)
T ss_pred cEEEEEcCCCCCHHHHHHHHhcCC--CC--C-c-CCccccceEEEE-------ECCEEEEEEECCCCh
Confidence 358899999999999999996433 41 1 1 235665443211 134789999999953
No 426
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.67 E-value=26 Score=41.29 Aligned_cols=29 Identities=14% Similarity=0.100 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001482 615 VCSEIEVLKSRSTAAEARLAAAREQALSA 643 (1070)
Q Consensus 615 l~~Ei~~Lk~~l~~le~~l~~l~~e~q~l 643 (1070)
+-..|.+|+.++..+...+...+.+...+
T Consensus 105 yl~kI~eleneLKq~r~el~~~q~E~erl 133 (772)
T KOG0999|consen 105 YLQKILELENELKQLRQELTNVQEENERL 133 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666666666655555555444433
No 427
>PF15294 Leu_zip: Leucine zipper
Probab=92.67 E-value=18 Score=39.59 Aligned_cols=54 Identities=19% Similarity=0.353 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 001482 676 SKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKM 729 (1070)
Q Consensus 676 ~~~l~~~l~~lr~ele~~i~e~e~ei~el~~kie~~e~~l~~l~~el~e~e~ki 729 (1070)
+.+++..+..++.++++.+.........+...+.....++-..+.++..++..+
T Consensus 192 l~dLE~k~a~lK~e~ek~~~d~~~~~k~L~e~L~~~KhelL~~QeqL~~aekeL 245 (278)
T PF15294_consen 192 LSDLENKMAALKSELEKALQDKESQQKALEETLQSCKHELLRVQEQLSLAEKEL 245 (278)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhcchhhH
Confidence 446666777777777777777666666666665555444444444444444333
No 428
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=92.62 E-value=0.32 Score=61.45 Aligned_cols=93 Identities=16% Similarity=0.275 Sum_probs=49.5
Q ss_pred EEEEEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeecccccccCCCCcchhH
Q 001482 71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYDQTGTYSTQ 150 (1070)
Q Consensus 71 v~vvsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~~~~~~~~~d~~ 150 (1070)
..+|+|+|....|||+|++.|.+.. |..+.. ...|..+-.+..++ +| ..+.|+||+|...+. ..+
T Consensus 290 ~pvV~ImGhvd~GKTSLl~~Lr~~~--v~~~e~-~GIT~~iga~~v~~-----~~--~~ItfiDTPGhe~F~-----~m~ 354 (787)
T PRK05306 290 PPVVTIMGHVDHGKTSLLDAIRKTN--VAAGEA-GGITQHIGAYQVET-----NG--GKITFLDTPGHEAFT-----AMR 354 (787)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhCC--cccccc-CceeeeccEEEEEE-----CC--EEEEEEECCCCccch-----hHH
Confidence 3589999999999999999998754 332211 11122221111111 12 568899999965431 111
Q ss_pred HHHHHHhhhhheeecCCCCCCHHHhhhh
Q 001482 151 IFSLAVLLSSMFIYNQMGGIDESAIDRL 178 (1070)
Q Consensus 151 ifaL~~llSS~~IyN~~~~i~~~~l~~L 178 (1070)
.-++...=.-++||.....+.......+
T Consensus 355 ~rga~~aDiaILVVdAddGv~~qT~e~i 382 (787)
T PRK05306 355 ARGAQVTDIVVLVVAADDGVMPQTIEAI 382 (787)
T ss_pred HhhhhhCCEEEEEEECCCCCCHhHHHHH
Confidence 1111111113567776555555454444
No 429
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=92.60 E-value=0.091 Score=55.77 Aligned_cols=28 Identities=14% Similarity=0.250 Sum_probs=24.2
Q ss_pred CCCEEEEEeecCCCCChhHHHHHHhCCC
Q 001482 68 KEPIGVVSVCGRARQGKSFILNQLLGRS 95 (1070)
Q Consensus 68 ~~~v~vvsv~G~~r~GKS~lln~l~~~~ 95 (1070)
+.+-.||+|+|+.|+|||||++.|.+..
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~l 30 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYEQL 30 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3456799999999999999999998764
No 430
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=92.60 E-value=0.28 Score=60.17 Aligned_cols=60 Identities=22% Similarity=0.335 Sum_probs=37.0
Q ss_pred EEEEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeecccccc
Q 001482 72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA 140 (1070)
Q Consensus 72 ~vvsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~~ 140 (1070)
.+|+|+|...+|||+|+|.|.+.. |..+.. ...|..+-.+..++ +++. .+.|+||||...
T Consensus 88 p~V~I~Ghvd~GKTSLl~~l~~~~--v~~~e~-~GIT~~ig~~~v~~----~~~~--~i~~iDTPGhe~ 147 (587)
T TIGR00487 88 PVVTIMGHVDHGKTSLLDSIRKTK--VAQGEA-GGITQHIGAYHVEN----EDGK--MITFLDTPGHEA 147 (587)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC--cccccC-CceeecceEEEEEE----CCCc--EEEEEECCCCcc
Confidence 479999999999999999998764 433211 11232222222111 1222 678899999653
No 431
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=92.59 E-value=0.14 Score=64.06 Aligned_cols=26 Identities=31% Similarity=0.511 Sum_probs=21.8
Q ss_pred CCEEEEEeecCCCCChhHHHHHHhCCC
Q 001482 69 EPIGVVSVCGRARQGKSFILNQLLGRS 95 (1070)
Q Consensus 69 ~~v~vvsv~G~~r~GKS~lln~l~~~~ 95 (1070)
.++. |+|+|...+|||||+|+|+...
T Consensus 23 ~~~~-i~iiGh~~~GKSTL~~~Ll~~~ 48 (632)
T PRK05506 23 SLLR-FITCGSVDDGKSTLIGRLLYDS 48 (632)
T ss_pred CeeE-EEEECCCCCChHHHHHHHHHHh
Confidence 4555 6699999999999999999654
No 432
>PRK01889 GTPase RsgA; Reviewed
Probab=92.58 E-value=0.071 Score=61.47 Aligned_cols=24 Identities=38% Similarity=0.583 Sum_probs=21.5
Q ss_pred EEEEeecCCCCChhHHHHHHhCCC
Q 001482 72 GVVSVCGRARQGKSFILNQLLGRS 95 (1070)
Q Consensus 72 ~vvsv~G~~r~GKS~lln~l~~~~ 95 (1070)
-+|+++|+.++|||+|+|.|+|..
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~~ 219 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGEE 219 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHhc
Confidence 378999999999999999999853
No 433
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=92.56 E-value=0.2 Score=54.18 Aligned_cols=58 Identities=24% Similarity=0.223 Sum_probs=39.8
Q ss_pred EEEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeeccccc
Q 001482 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (1070)
Q Consensus 73 vvsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~ 139 (1070)
=|.|+|..++|||.|++++++.. |.- ...| |.|.-.. .++ ..+|..+.+.|.||.|..
T Consensus 15 KIvvvGd~~VGKTsLi~r~~~~~--F~~--~y~p-Ti~~~~~-~~i---~~~~~~v~l~iwDTaG~e 72 (232)
T cd04174 15 KLVLVGDVQCGKTAMLQVLAKDC--YPE--TYVP-TVFENYT-AGL---ETEEQRVELSLWDTSGSP 72 (232)
T ss_pred EEEEECCCCCcHHHHHHHHhcCC--CCC--CcCC-ceeeeeE-EEE---EECCEEEEEEEEeCCCch
Confidence 46699999999999999998765 642 2223 3343222 222 235777899999999953
No 434
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=92.45 E-value=0.34 Score=57.54 Aligned_cols=27 Identities=30% Similarity=0.441 Sum_probs=23.4
Q ss_pred CCEEEEEeecCCCCChhHHHHHHhCCC
Q 001482 69 EPIGVVSVCGRARQGKSFILNQLLGRS 95 (1070)
Q Consensus 69 ~~v~vvsv~G~~r~GKS~lln~l~~~~ 95 (1070)
+|..-|+|+|...+|||||+|+|++..
T Consensus 4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~ 30 (425)
T PRK12317 4 KPHLNLAVIGHVDHGKSTLVGRLLYET 30 (425)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHc
Confidence 566679999999999999999998543
No 435
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=92.41 E-value=0.19 Score=53.57 Aligned_cols=23 Identities=35% Similarity=0.543 Sum_probs=21.5
Q ss_pred EEEeecCCCCChhHHHHHHhCCC
Q 001482 73 VVSVCGRARQGKSFILNQLLGRS 95 (1070)
Q Consensus 73 vvsv~G~~r~GKS~lln~l~~~~ 95 (1070)
+++|+|+.|+|||||++.|+|..
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G~~ 48 (213)
T TIGR01277 26 IVAIMGPSGAGKSTLLNLIAGFI 48 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 79999999999999999999864
No 436
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=92.37 E-value=0.13 Score=55.08 Aligned_cols=23 Identities=30% Similarity=0.366 Sum_probs=21.2
Q ss_pred EEEeecCCCCChhHHHHHHhCCC
Q 001482 73 VVSVCGRARQGKSFILNQLLGRS 95 (1070)
Q Consensus 73 vvsv~G~~r~GKS~lln~l~~~~ 95 (1070)
+|+|+|+.|+||||||+.|.|-.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~ 55 (218)
T cd03266 33 VTGLLGPNGAGKTTTLRMLAGLL 55 (218)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 68999999999999999999864
No 437
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.36 E-value=0.12 Score=57.27 Aligned_cols=23 Identities=30% Similarity=0.367 Sum_probs=21.4
Q ss_pred EEEeecCCCCChhHHHHHHhCCC
Q 001482 73 VVSVCGRARQGKSFILNQLLGRS 95 (1070)
Q Consensus 73 vvsv~G~~r~GKS~lln~l~~~~ 95 (1070)
+++|+|+.|+||||||+.|.|..
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~ 51 (271)
T PRK13638 29 VTGLVGANGCGKSTLFMNLSGLL 51 (271)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 79999999999999999999864
No 438
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=92.30 E-value=15 Score=37.80 Aligned_cols=57 Identities=21% Similarity=0.233 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001482 738 SQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKV 794 (1070)
Q Consensus 738 ~l~~ei~~l~~~le~~~~~i~~le~~l~~le~e~~~le~~l~~~~~~~ee~~e~l~~ 794 (1070)
.++.+...+..+++.-+..+..+.......-..+.++++++.....+...+...+..
T Consensus 46 qLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~ 102 (177)
T PF13870_consen 46 QLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKD 102 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444443333334444444333333333333333333
No 439
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=92.28 E-value=0.22 Score=53.44 Aligned_cols=53 Identities=25% Similarity=0.399 Sum_probs=37.3
Q ss_pred EEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeeccccc
Q 001482 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (1070)
Q Consensus 74 vsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~ 139 (1070)
|.|+|..++|||+|+++|++.. |.- . ..|.|.-+....+ ..+.+.++||.|..
T Consensus 3 IvivG~~~vGKTSLi~r~~~~~--f~~---~-~~Tig~~~~~~~~-------~~~~l~iwDt~G~e 55 (220)
T cd04126 3 VVLLGDMNVGKTSLLHRYMERR--FKD---T-VSTVGGAFYLKQW-------GPYNISIWDTAGRE 55 (220)
T ss_pred EEEECCCCCcHHHHHHHHhcCC--CCC---C-CCccceEEEEEEe-------eEEEEEEEeCCCcc
Confidence 6789999999999999999876 641 2 2355544333221 24678999999964
No 440
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=92.26 E-value=0.13 Score=55.19 Aligned_cols=23 Identities=35% Similarity=0.449 Sum_probs=21.4
Q ss_pred EEEeecCCCCChhHHHHHHhCCC
Q 001482 73 VVSVCGRARQGKSFILNQLLGRS 95 (1070)
Q Consensus 73 vvsv~G~~r~GKS~lln~l~~~~ 95 (1070)
+++|+|+.|+||||||+.|.|..
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~G~~ 54 (221)
T cd03244 32 KVGIVGRTGSGKSSLLLALFRLV 54 (221)
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 79999999999999999999864
No 441
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=92.26 E-value=0.13 Score=58.05 Aligned_cols=24 Identities=33% Similarity=0.379 Sum_probs=21.9
Q ss_pred EEEEeecCCCCChhHHHHHHhCCC
Q 001482 72 GVVSVCGRARQGKSFILNQLLGRS 95 (1070)
Q Consensus 72 ~vvsv~G~~r~GKS~lln~l~~~~ 95 (1070)
-+++|+|+.|+||||||+.|.|..
T Consensus 31 e~~~l~G~NGaGKSTLl~~l~Gl~ 54 (303)
T TIGR01288 31 ECFGLLGPNGAGKSTIARMLLGMI 54 (303)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 379999999999999999999864
No 442
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=92.26 E-value=0.25 Score=60.79 Aligned_cols=66 Identities=14% Similarity=0.272 Sum_probs=41.5
Q ss_pred EEEeecCCCCChhHHHHHHhCCCCCccccCCC---------CcccceEEeeccccccccCCCCceeEEEeeccccccc
Q 001482 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTH---------RPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAY 141 (1070)
Q Consensus 73 vvsv~G~~r~GKS~lln~l~~~~~gF~~~~~~---------~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~~~ 141 (1070)
-|+|+|...+|||+|++.|+.....|.-...+ .-...||=+.+..... .+..+.+-|+||||..++
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v---~~~~~kinlIDTPGh~DF 77 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAI---RYNGTKINIVDTPGHADF 77 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEE---EECCEEEEEEECCCHHHH
Confidence 37899999999999999999765545332111 1123566544432211 123467889999997543
No 443
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.24 E-value=0.11 Score=54.47 Aligned_cols=35 Identities=23% Similarity=0.331 Sum_probs=28.0
Q ss_pred HHHHHccCCCEE---EEEeecCCCCChhHHHHHHhCCC
Q 001482 61 VAALQLVKEPIG---VVSVCGRARQGKSFILNQLLGRS 95 (1070)
Q Consensus 61 l~~l~~~~~~v~---vvsv~G~~r~GKS~lln~l~~~~ 95 (1070)
.++|+.++-.|. |-+|+||.+||||||.+.|+|..
T Consensus 17 keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p 54 (251)
T COG0396 17 KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHP 54 (251)
T ss_pred hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 356766654333 88999999999999999999975
No 444
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=92.15 E-value=0.2 Score=54.93 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=21.6
Q ss_pred EEEeecCCCCChhHHHHHHhCCC
Q 001482 73 VVSVCGRARQGKSFILNQLLGRS 95 (1070)
Q Consensus 73 vvsv~G~~r~GKS~lln~l~~~~ 95 (1070)
+++|+|+.|+||||||+.|+|..
T Consensus 31 ~~~l~G~nGsGKSTLl~~l~Gl~ 53 (254)
T PRK10418 31 VLALVGGSGSGKSLTCAAALGIL 53 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999875
No 445
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=92.13 E-value=0.12 Score=43.01 Aligned_cols=20 Identities=30% Similarity=0.473 Sum_probs=18.1
Q ss_pred EEEeecCCCCChhHHHHHHh
Q 001482 73 VVSVCGRARQGKSFILNQLL 92 (1070)
Q Consensus 73 vvsv~G~~r~GKS~lln~l~ 92 (1070)
+..|.|+.++|||+||+.+.
T Consensus 25 ~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68899999999999998864
No 446
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=92.08 E-value=0.34 Score=59.96 Aligned_cols=23 Identities=22% Similarity=0.572 Sum_probs=21.2
Q ss_pred EEEeecCCCCChhHHHHHHhCCC
Q 001482 73 VVSVCGRARQGKSFILNQLLGRS 95 (1070)
Q Consensus 73 vvsv~G~~r~GKS~lln~l~~~~ 95 (1070)
||+++|....|||+|+|.|.|..
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~ 24 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVN 24 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 89999999999999999999753
No 447
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=92.01 E-value=0.15 Score=55.43 Aligned_cols=24 Identities=29% Similarity=0.338 Sum_probs=21.9
Q ss_pred EEEEeecCCCCChhHHHHHHhCCC
Q 001482 72 GVVSVCGRARQGKSFILNQLLGRS 95 (1070)
Q Consensus 72 ~vvsv~G~~r~GKS~lln~l~~~~ 95 (1070)
-+++|+|+.|+|||||++.|+|..
T Consensus 28 e~~~l~G~nGsGKSTLl~~l~G~~ 51 (240)
T PRK09493 28 EVVVIIGPSGSGKSTLLRCINKLE 51 (240)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 379999999999999999999864
No 448
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=91.99 E-value=28 Score=40.09 Aligned_cols=13 Identities=15% Similarity=0.153 Sum_probs=9.0
Q ss_pred CCceEeccCCCCC
Q 001482 263 DRECFTLVRPLSN 275 (1070)
Q Consensus 263 ~~~c~~l~~P~~~ 275 (1070)
++....||+|+.+
T Consensus 45 srtv~s~~~~V~~ 57 (554)
T KOG4677|consen 45 SRTVNSLRDFVDD 57 (554)
T ss_pred ccccccccccccc
Confidence 4566777887765
No 449
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=91.99 E-value=0.13 Score=54.77 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=21.3
Q ss_pred EEEeecCCCCChhHHHHHHhCCC
Q 001482 73 VVSVCGRARQGKSFILNQLLGRS 95 (1070)
Q Consensus 73 vvsv~G~~r~GKS~lln~l~~~~ 95 (1070)
.|+|+|..++||||||+.|.|.-
T Consensus 55 ~vGiiG~NGaGKSTLlkliaGi~ 77 (249)
T COG1134 55 RVGIIGHNGAGKSTLLKLIAGIY 77 (249)
T ss_pred EEEEECCCCCcHHHHHHHHhCcc
Confidence 69999999999999999999864
No 450
>PRK00300 gmk guanylate kinase; Provisional
Probab=91.99 E-value=0.13 Score=54.38 Aligned_cols=27 Identities=26% Similarity=0.364 Sum_probs=23.3
Q ss_pred CEEEEEeecCCCCChhHHHHHHhCCCC
Q 001482 70 PIGVVSVCGRARQGKSFILNQLLGRSS 96 (1070)
Q Consensus 70 ~v~vvsv~G~~r~GKS~lln~l~~~~~ 96 (1070)
|-.+|+|+||.|+|||+|++.|.+...
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 345799999999999999999998753
No 451
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=91.96 E-value=19 Score=38.13 Aligned_cols=10 Identities=30% Similarity=0.122 Sum_probs=6.2
Q ss_pred ccccccCCCC
Q 001482 989 KRSRSTTSPL 998 (1070)
Q Consensus 989 ~~~~~~~~~~ 998 (1070)
|+++|+..|+
T Consensus 299 k~~rs~si~~ 308 (333)
T KOG1853|consen 299 KVERSDSILS 308 (333)
T ss_pred cccccCcccc
Confidence 6677765553
No 452
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=91.94 E-value=0.15 Score=56.71 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=21.5
Q ss_pred EEEeecCCCCChhHHHHHHhCCC
Q 001482 73 VVSVCGRARQGKSFILNQLLGRS 95 (1070)
Q Consensus 73 vvsv~G~~r~GKS~lln~l~~~~ 95 (1070)
+++|+|+.|+||||||+.|.|-.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (274)
T PRK13644 30 YIGIIGKNGSGKSTLALHLNGLL 52 (274)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 89999999999999999999864
No 453
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=91.94 E-value=39 Score=41.72 Aligned_cols=10 Identities=20% Similarity=0.388 Sum_probs=3.9
Q ss_pred HHHHHHHHhc
Q 001482 1032 QKLKQELTKH 1041 (1070)
Q Consensus 1032 ~~~~~~~~~~ 1041 (1070)
..+.+-|.+.
T Consensus 481 ~~~~~~l~~l 490 (563)
T TIGR00634 481 QAIAKKLAQL 490 (563)
T ss_pred HHHHHHHHHH
Confidence 3333334433
No 454
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=91.88 E-value=0.17 Score=50.63 Aligned_cols=21 Identities=29% Similarity=0.577 Sum_probs=18.9
Q ss_pred EEEeecCCCCChhHHHHHHhC
Q 001482 73 VVSVCGRARQGKSFILNQLLG 93 (1070)
Q Consensus 73 vvsv~G~~r~GKS~lln~l~~ 93 (1070)
||+++|+.|+|||+++..|..
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~ 21 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALIT 21 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 589999999999999998864
No 455
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=91.85 E-value=0.15 Score=56.35 Aligned_cols=23 Identities=26% Similarity=0.406 Sum_probs=21.4
Q ss_pred EEEeecCCCCChhHHHHHHhCCC
Q 001482 73 VVSVCGRARQGKSFILNQLLGRS 95 (1070)
Q Consensus 73 vvsv~G~~r~GKS~lln~l~~~~ 95 (1070)
+++|+|+.|+||||||+.|.|..
T Consensus 41 ~~~i~G~NGsGKSTLl~~l~Gl~ 63 (267)
T PRK15112 41 TLAIIGENGSGKSTLAKMLAGMI 63 (267)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999864
No 456
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=91.85 E-value=0.23 Score=53.65 Aligned_cols=23 Identities=35% Similarity=0.456 Sum_probs=21.5
Q ss_pred EEEeecCCCCChhHHHHHHhCCC
Q 001482 73 VVSVCGRARQGKSFILNQLLGRS 95 (1070)
Q Consensus 73 vvsv~G~~r~GKS~lln~l~~~~ 95 (1070)
+++|+|+.|+||||||+.|.|..
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~ 49 (232)
T PRK10771 27 RVAILGPSGAGKSTLLNLIAGFL 49 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999864
No 457
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=91.81 E-value=0.12 Score=61.60 Aligned_cols=22 Identities=27% Similarity=0.537 Sum_probs=20.1
Q ss_pred EEEEeecCCCCChhHHHHHHhC
Q 001482 72 GVVSVCGRARQGKSFILNQLLG 93 (1070)
Q Consensus 72 ~vvsv~G~~r~GKS~lln~l~~ 93 (1070)
.||+|+|+.|+||||++..|.+
T Consensus 351 ~vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 351 GVIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5999999999999999998874
No 458
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=91.81 E-value=0.14 Score=53.13 Aligned_cols=27 Identities=33% Similarity=0.480 Sum_probs=23.7
Q ss_pred CCEEEEEeecCCCCChhHHHHHHhCCC
Q 001482 69 EPIGVVSVCGRARQGKSFILNQLLGRS 95 (1070)
Q Consensus 69 ~~v~vvsv~G~~r~GKS~lln~l~~~~ 95 (1070)
.|=-|++|+||.++||||||..|-|..
T Consensus 25 ~pGev~ailGPNGAGKSTlLk~LsGel 51 (259)
T COG4559 25 RPGEVLAILGPNGAGKSTLLKALSGEL 51 (259)
T ss_pred cCCcEEEEECCCCccHHHHHHHhhCcc
Confidence 355589999999999999999999864
No 459
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=91.80 E-value=0.11 Score=53.55 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=21.4
Q ss_pred EEEeecCCCCChhHHHHHHhCCC
Q 001482 73 VVSVCGRARQGKSFILNQLLGRS 95 (1070)
Q Consensus 73 vvsv~G~~r~GKS~lln~l~~~~ 95 (1070)
+|+|+|+.++|||||++.|.|..
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 79999999999999999999864
No 460
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.79 E-value=0.12 Score=56.10 Aligned_cols=23 Identities=26% Similarity=0.525 Sum_probs=21.4
Q ss_pred EEEeecCCCCChhHHHHHHhCCC
Q 001482 73 VVSVCGRARQGKSFILNQLLGRS 95 (1070)
Q Consensus 73 vvsv~G~~r~GKS~lln~l~~~~ 95 (1070)
+++|+|+.|+||||||+.|.|..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999864
No 461
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=91.79 E-value=35 Score=40.90 Aligned_cols=20 Identities=10% Similarity=0.328 Sum_probs=10.7
Q ss_pred hhHhhHHHHHHHHHhcCchh
Q 001482 1026 YTKFTVQKLKQELTKHNFGA 1045 (1070)
Q Consensus 1026 ~~~~~~~~~~~~~~~~~~~~ 1045 (1070)
+.+++-..+=..|.+.|+|-
T Consensus 547 fa~W~~EqvcnWlae~Gl~q 566 (861)
T KOG1899|consen 547 FADWRSEQVCNWLAEIGLGQ 566 (861)
T ss_pred hhhccHHHHHHHHHHhchHH
Confidence 45555555555555555553
No 462
>PRK00049 elongation factor Tu; Reviewed
Probab=91.74 E-value=0.33 Score=56.95 Aligned_cols=26 Identities=19% Similarity=0.265 Sum_probs=23.0
Q ss_pred CCEEEEEeecCCCCChhHHHHHHhCC
Q 001482 69 EPIGVVSVCGRARQGKSFILNQLLGR 94 (1070)
Q Consensus 69 ~~v~vvsv~G~~r~GKS~lln~l~~~ 94 (1070)
.|..-|+|+|...+|||+|++.|++.
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~ 35 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKV 35 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHh
Confidence 56667999999999999999999973
No 463
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=91.72 E-value=25 Score=38.95 Aligned_cols=17 Identities=35% Similarity=0.425 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001482 839 RQIESLERQKTDLTNEV 855 (1070)
Q Consensus 839 ~~i~~Le~e~~~l~~el 855 (1070)
..|..|+....+|--|+
T Consensus 201 ~yI~~LEsKVqDLm~Ei 217 (401)
T PF06785_consen 201 AYIGKLESKVQDLMYEI 217 (401)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333343333333333
No 464
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=91.71 E-value=0.14 Score=52.79 Aligned_cols=56 Identities=20% Similarity=0.219 Sum_probs=31.4
Q ss_pred EEEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeeccccc
Q 001482 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139 (1070)
Q Consensus 73 vvsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~~ 139 (1070)
.|-++||.++||+.|..+|.... +.-..+......+.++ . ++....+-|+|+||-.
T Consensus 5 ~vlL~Gps~SGKTaLf~~L~~~~--~~~T~tS~e~n~~~~~-~--------~~~~~~~~lvD~PGH~ 60 (181)
T PF09439_consen 5 TVLLVGPSGSGKTALFSQLVNGK--TVPTVTSMENNIAYNV-N--------NSKGKKLRLVDIPGHP 60 (181)
T ss_dssp EEEEE-STTSSHHHHHHHHHHSS-----B---SSEEEECCG-S--------STCGTCECEEEETT-H
T ss_pred eEEEEcCCCCCHHHHHHHHhcCC--cCCeeccccCCceEEe-e--------cCCCCEEEEEECCCcH
Confidence 57789999999999999998653 2222222222223332 1 1122357788999953
No 465
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=91.68 E-value=0.2 Score=58.12 Aligned_cols=23 Identities=22% Similarity=0.395 Sum_probs=21.5
Q ss_pred EEEeecCCCCChhHHHHHHhCCC
Q 001482 73 VVSVCGRARQGKSFILNQLLGRS 95 (1070)
Q Consensus 73 vvsv~G~~r~GKS~lln~l~~~~ 95 (1070)
+++|+||.|+||||||+.|.|-.
T Consensus 42 ~~~LlGpsGsGKSTLLr~IaGl~ 64 (375)
T PRK09452 42 FLTLLGPSGCGKTTVLRLIAGFE 64 (375)
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 79999999999999999999864
No 466
>PF13514 AAA_27: AAA domain
Probab=91.67 E-value=63 Score=43.54 Aligned_cols=47 Identities=17% Similarity=0.140 Sum_probs=20.5
Q ss_pred CCChHHHHHHHHHHHHH---HHHHHhhccCCChhhhHHHHHHHHHHHHHHH
Q 001482 375 PPEEVALGEAHEAAVQK---ALAVYNAGAVGVGLARKKYEGLLQKFFRKAF 422 (1070)
Q Consensus 375 p~~~~~l~~~h~~~~~~---al~~f~~~~~g~~~~~~~~~~~L~~~i~~~~ 422 (1070)
.++-+.|.......... .=..+-+...|.+. .....+.|.....+.|
T Consensus 94 ~~d~~~L~~gG~~l~~~~gdlg~~Lf~agaG~~~-l~~~~~~L~~ea~~Lf 143 (1111)
T PF13514_consen 94 SFDHEELREGGESLLEAEGDLGQLLFSAGAGLGS-LSQVLKQLDKEADELF 143 (1111)
T ss_pred cCCHHHHHHHHHHHHhhhhHHHHHHHHhcccccc-HHHHHHHHHHHHHHhh
Confidence 45556666664333322 12233333344333 3445555555444443
No 467
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=91.66 E-value=0.39 Score=56.38 Aligned_cols=105 Identities=12% Similarity=0.200 Sum_probs=54.9
Q ss_pred CCCEEEEEeecCCCCChhHHHHHHhCCC--------CCccccCC-CCcccceEEeeccccccccCCCCceeEEEeecccc
Q 001482 68 KEPIGVVSVCGRARQGKSFILNQLLGRS--------SGFQVAST-HRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI 138 (1070)
Q Consensus 68 ~~~v~vvsv~G~~r~GKS~lln~l~~~~--------~gF~~~~~-~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~ 138 (1070)
..|...|+|+|...+|||+|++.|++.. .++.+... ..--..|+=+-...+.. .+....+.|+||+|.
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~---~~~~~~~~liDtpGh 85 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEY---ETENRHYAHVDCPGH 85 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEE---cCCCEEEEEEECCch
Confidence 3567789999999999999999998541 01111000 00001122111111111 112356889999996
Q ss_pred cccCCCCcchhHHHHHHHhhhhheeecCCCCCCHHHhhhhHH
Q 001482 139 DAYDQTGTYSTQIFSLAVLLSSMFIYNQMGGIDESAIDRLSL 180 (1070)
Q Consensus 139 ~~~~~~~~~d~~ifaL~~llSS~~IyN~~~~i~~~~l~~L~~ 180 (1070)
..+ ....+.+++..-.-++|+.....+..++..++.+
T Consensus 86 ~~f-----~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~ 122 (394)
T TIGR00485 86 ADY-----VKNMITGAAQMDGAILVVSATDGPMPQTREHILL 122 (394)
T ss_pred HHH-----HHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHH
Confidence 321 1233444444334456676665566655555544
No 468
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=91.62 E-value=0.4 Score=58.16 Aligned_cols=96 Identities=14% Similarity=0.238 Sum_probs=51.7
Q ss_pred CCEEEEEeecCCCCChhHHHHHHhCCCCCccccCCC-----Cc----------ccceEEeeccccccccCCCCceeEEEe
Q 001482 69 EPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTH-----RP----------CTKGLWLWSAPLKRTALDGTEYNLLLL 133 (1070)
Q Consensus 69 ~~v~vvsv~G~~r~GKS~lln~l~~~~~gF~~~~~~-----~~----------~t~giw~~~~p~~~~~~~g~~~~~~ll 133 (1070)
..+--|+|+|..++|||+|++.|+-....-...+.+ .+ .+.||=+.+..... +...+.+.|+
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~---~~~~~~inli 85 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQF---PYRDCLVNLL 85 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEE---eeCCeEEEEE
Confidence 346679999999999999999987332111100011 01 12344443332211 2234778899
Q ss_pred ecccccccCCCCcchhHHHHHHHhhhhheeecCCCCCCH
Q 001482 134 DSEGIDAYDQTGTYSTQIFSLAVLLSSMFIYNQMGGIDE 172 (1070)
Q Consensus 134 DteG~~~~~~~~~~d~~ifaL~~llSS~~IyN~~~~i~~ 172 (1070)
||+|...+. .+ ..-+|...=+-++|+.....+..
T Consensus 86 DTPG~~df~----~~-~~~~l~~aD~aIlVvDa~~gv~~ 119 (527)
T TIGR00503 86 DTPGHEDFS----ED-TYRTLTAVDNCLMVIDAAKGVET 119 (527)
T ss_pred ECCChhhHH----HH-HHHHHHhCCEEEEEEECCCCCCH
Confidence 999964221 11 22234443344566766555543
No 469
>PTZ00301 uridine kinase; Provisional
Probab=91.62 E-value=0.13 Score=54.58 Aligned_cols=24 Identities=25% Similarity=0.527 Sum_probs=21.1
Q ss_pred CEEEEEeecCCCCChhHHHHHHhC
Q 001482 70 PIGVVSVCGRARQGKSFILNQLLG 93 (1070)
Q Consensus 70 ~v~vvsv~G~~r~GKS~lln~l~~ 93 (1070)
|.-||+|+|+.+||||||.+.|..
T Consensus 2 ~~~iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 2 PCTVIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred CCEEEEEECCCcCCHHHHHHHHHH
Confidence 567999999999999999987753
No 470
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=91.61 E-value=0.13 Score=53.75 Aligned_cols=23 Identities=35% Similarity=0.424 Sum_probs=21.5
Q ss_pred EEEeecCCCCChhHHHHHHhCCC
Q 001482 73 VVSVCGRARQGKSFILNQLLGRS 95 (1070)
Q Consensus 73 vvsv~G~~r~GKS~lln~l~~~~ 95 (1070)
+++|+|+.|+||||||+.|.|..
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999864
No 471
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=91.59 E-value=0.12 Score=54.28 Aligned_cols=22 Identities=18% Similarity=0.434 Sum_probs=20.1
Q ss_pred EEEeecCCCCChhHHHHHHhCC
Q 001482 73 VVSVCGRARQGKSFILNQLLGR 94 (1070)
Q Consensus 73 vvsv~G~~r~GKS~lln~l~~~ 94 (1070)
||+|+|+.+||||||.+.|...
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~ 22 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQI 22 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999998653
No 472
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=91.54 E-value=0.19 Score=52.33 Aligned_cols=39 Identities=33% Similarity=0.399 Sum_probs=29.1
Q ss_pred CHHHHHHHHccCCCEE---EEEeecCCCCChhHHHHHHhCCC
Q 001482 57 DPEAVAALQLVKEPIG---VVSVCGRARQGKSFILNQLLGRS 95 (1070)
Q Consensus 57 ~~eal~~l~~~~~~v~---vvsv~G~~r~GKS~lln~l~~~~ 95 (1070)
.+..-.+|..+.-.|. +|+|+|..++|||||+|.+.|..
T Consensus 15 ~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l 56 (263)
T COG1101 15 TPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDL 56 (263)
T ss_pred ChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCcc
Confidence 3444455555443333 89999999999999999999975
No 473
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=91.51 E-value=21 Score=37.85 Aligned_cols=26 Identities=8% Similarity=0.230 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001482 915 ANAMAERLSLEVQSAQAKLDEMQQEL 940 (1070)
Q Consensus 915 a~~r~~~L~~ql~~~~~~l~~le~el 940 (1070)
.+.-+-.|+.+|+..+..|..+...+
T Consensus 276 mqsTiliLQq~Lketr~~Iq~l~k~~ 301 (330)
T KOG2991|consen 276 MQSTILILQQKLKETRKEIQRLKKGL 301 (330)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444555555555444443
No 474
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=91.47 E-value=0.13 Score=54.84 Aligned_cols=23 Identities=35% Similarity=0.527 Sum_probs=21.5
Q ss_pred EEEeecCCCCChhHHHHHHhCCC
Q 001482 73 VVSVCGRARQGKSFILNQLLGRS 95 (1070)
Q Consensus 73 vvsv~G~~r~GKS~lln~l~~~~ 95 (1070)
+++|+|+.|+||||||+.|.|..
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 31 MVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999864
No 475
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=91.45 E-value=34 Score=40.09 Aligned_cols=21 Identities=24% Similarity=0.338 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001482 765 RIMEQDKVYLEQKYKSEFERF 785 (1070)
Q Consensus 765 ~~le~e~~~le~~l~~~~~~~ 785 (1070)
+.++.+..+++.++.+....+
T Consensus 271 ~ql~aE~~EleDkyAE~m~~~ 291 (596)
T KOG4360|consen 271 RQLTAELEELEDKYAECMQML 291 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444333333333
No 476
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=91.44 E-value=0.24 Score=57.52 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=21.4
Q ss_pred EEEeecCCCCChhHHHHHHhCCC
Q 001482 73 VVSVCGRARQGKSFILNQLLGRS 95 (1070)
Q Consensus 73 vvsv~G~~r~GKS~lln~l~~~~ 95 (1070)
+++|+|+.|+||||||+.|.|-.
T Consensus 31 ~~~l~G~nGsGKSTLL~~iaGl~ 53 (369)
T PRK11000 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (369)
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 79999999999999999999864
No 477
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=91.43 E-value=0.1 Score=54.92 Aligned_cols=23 Identities=13% Similarity=0.492 Sum_probs=20.8
Q ss_pred EEEeecCCCCChhHHHHHHhCCC
Q 001482 73 VVSVCGRARQGKSFILNQLLGRS 95 (1070)
Q Consensus 73 vvsv~G~~r~GKS~lln~l~~~~ 95 (1070)
||+|+|+.++|||||++.|.+..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 69999999999999999998753
No 478
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=91.43 E-value=0.098 Score=56.08 Aligned_cols=23 Identities=22% Similarity=0.291 Sum_probs=20.9
Q ss_pred EEEeecCCCCChhHHHHHHhCCC
Q 001482 73 VVSVCGRARQGKSFILNQLLGRS 95 (1070)
Q Consensus 73 vvsv~G~~r~GKS~lln~l~~~~ 95 (1070)
||+|+|+.|||||||++.|.+..
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l 23 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALL 23 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHH
Confidence 69999999999999999998753
No 479
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=91.43 E-value=16 Score=39.87 Aligned_cols=34 Identities=29% Similarity=0.414 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 001482 691 SSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKA 724 (1070)
Q Consensus 691 e~~i~e~e~ei~el~~kie~~e~~l~~l~~el~e 724 (1070)
+..+...+++....+..+...+..+..|..++..
T Consensus 11 e~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~ 44 (246)
T PF00769_consen 11 EERLRQMEEEMRRAQEALEESEETAEELEEKLKQ 44 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444443333333333333333333
No 480
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=91.38 E-value=0.14 Score=54.47 Aligned_cols=24 Identities=33% Similarity=0.375 Sum_probs=21.8
Q ss_pred EEEEeecCCCCChhHHHHHHhCCC
Q 001482 72 GVVSVCGRARQGKSFILNQLLGRS 95 (1070)
Q Consensus 72 ~vvsv~G~~r~GKS~lln~l~~~~ 95 (1070)
-+++|+|+.|+||||||+.|+|..
T Consensus 28 ~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 28 EFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 379999999999999999999864
No 481
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.35 E-value=0.28 Score=53.08 Aligned_cols=24 Identities=21% Similarity=0.340 Sum_probs=22.0
Q ss_pred EEEEeecCCCCChhHHHHHHhCCC
Q 001482 72 GVVSVCGRARQGKSFILNQLLGRS 95 (1070)
Q Consensus 72 ~vvsv~G~~r~GKS~lln~l~~~~ 95 (1070)
-+++|+|+.++||||||+.|+|..
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~g~~ 50 (232)
T cd03300 27 EFFTLLGPSGCGKTTLLRLIAGFE 50 (232)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 479999999999999999999874
No 482
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=91.35 E-value=0.31 Score=52.77 Aligned_cols=23 Identities=30% Similarity=0.533 Sum_probs=21.8
Q ss_pred EEEEeecCCCCChhHHHHHHhCC
Q 001482 72 GVVSVCGRARQGKSFILNQLLGR 94 (1070)
Q Consensus 72 ~vvsv~G~~r~GKS~lln~l~~~ 94 (1070)
.+++|+||.|+|||||+-.++|-
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLGl 53 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILGL 53 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999999994
No 483
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=91.34 E-value=0.14 Score=52.83 Aligned_cols=21 Identities=38% Similarity=0.438 Sum_probs=19.6
Q ss_pred EEEeecCCCCChhHHHHHHhC
Q 001482 73 VVSVCGRARQGKSFILNQLLG 93 (1070)
Q Consensus 73 vvsv~G~~r~GKS~lln~l~~ 93 (1070)
+|+|+||.++|||||||.+++
T Consensus 23 ~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 23 LVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 789999999999999999875
No 484
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=91.33 E-value=0.55 Score=56.42 Aligned_cols=28 Identities=25% Similarity=0.481 Sum_probs=23.0
Q ss_pred CCCEEEEEeecCCCCChhHHHHHHhCCC
Q 001482 68 KEPIGVVSVCGRARQGKSFILNQLLGRS 95 (1070)
Q Consensus 68 ~~~v~vvsv~G~~r~GKS~lln~l~~~~ 95 (1070)
..+..-|+|+|...+|||||+++|+...
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~ 51 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDT 51 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhc
Confidence 3555667799999999999999998654
No 485
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=91.31 E-value=9.7 Score=35.16 Aligned_cols=105 Identities=19% Similarity=0.232 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001482 852 TNEVNRIRESELEALSKVALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQA 931 (1070)
Q Consensus 852 ~~el~~l~~~~~~~~~~~~~le~~v~ele~eie~L~~~~~e~r~~~i~~le~~Le~er~~~~ea~~r~~~L~~ql~~~~~ 931 (1070)
.++-..+.....++..++..++..++....-.+.| .....+....+..|+....+....+.+.+.++..+...++.-+-
T Consensus 1 ~ee~~~l~as~~el~n~La~Le~slE~~K~S~~eL-~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK~ 79 (107)
T PF09304_consen 1 KEEKEALEASQNELQNRLASLERSLEDEKTSQGEL-AKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDEKQ 79 (107)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhhcchHHHhhhhhhh
Q 001482 932 KLDEMQQELTKARLNETALGSKLRAV 957 (1070)
Q Consensus 932 ~l~~le~el~~~~~~~~~l~~~l~~~ 957 (1070)
.-..|+..+...+.+.+.++-+|.++
T Consensus 80 ak~~l~~r~~k~~~dka~lel~l~e~ 105 (107)
T PF09304_consen 80 AKLELESRLLKAQKDKAILELKLAEA 105 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHhh
No 486
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=91.28 E-value=29 Score=41.65 Aligned_cols=193 Identities=8% Similarity=0.107 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001482 615 VCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTL 694 (1070)
Q Consensus 615 l~~Ei~~Lk~~l~~le~~l~~l~~e~q~lq~el~e~k~~le~e~~elk~~le~~~~~le~~~~~l~~~l~~lr~ele~~i 694 (1070)
+..++..++.++..+..++..++.+...+...-..+...-.................+...+...+.....-+..+..++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~rL~a~~~~~~~~~~~f~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (457)
T TIGR01000 95 EENQKQLLEQQLDNLKDQKKSLDTLKQSIENGRNQFPTDDSFGYRNLFNGYLAQVESLTSETQQQNDKSQTQNEAAEKTK 174 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCcchhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhH
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHH
Q 001482 695 AEKEEEMKEKATKIEHAEQCLTTLRLELK-----AAESKMRSYEVEISSQKL----------ETKELSEKLEAVNAKAQS 759 (1070)
Q Consensus 695 ~e~e~ei~el~~kie~~e~~l~~l~~el~-----e~e~ki~~~e~e~~~l~~----------ei~~l~~~le~~~~~i~~ 759 (1070)
......+..++..+...+.....++..+. ......+.+..++..++. .+..+..++..+...+..
T Consensus 175 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~i~~ 254 (457)
T TIGR01000 175 AQLDQQISKTDQKLQDYQALKNAISNGTKVANFNPYQSLYENYQAQLKSASDKDQKNQVKSTILATIQQQIDQLQKSIAS 254 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHH------------HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001482 760 FEREARIM------------EQDKVYLEQKYK-SEFERFEEVQERCKVAEKEAKKATELAD 807 (1070)
Q Consensus 760 le~~l~~l------------e~e~~~le~~l~-~~~~~~ee~~e~l~~~e~e~~~~~e~~~ 807 (1070)
++.++..+ +..+..+..... ....++++++.++..++..+..+...+.
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~l~~a~~~l~ 315 (457)
T TIGR01000 255 YQVQKAGLTKSTASNYASSQNSKLAQLKEQQLAKVKQEITDLNQKLLELESKIKSLKEDSQ 315 (457)
T ss_pred HHHHHhhccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 487
>PLN03127 Elongation factor Tu; Provisional
Probab=91.28 E-value=0.68 Score=55.09 Aligned_cols=109 Identities=14% Similarity=0.210 Sum_probs=0.0
Q ss_pred CCCEEEEEeecCCCCChhHHHHHHh------CCCCCcc---ccCCCCcccceEEeeccccccccCCCCceeEEEeecccc
Q 001482 68 KEPIGVVSVCGRARQGKSFILNQLL------GRSSGFQ---VASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI 138 (1070)
Q Consensus 68 ~~~v~vvsv~G~~r~GKS~lln~l~------~~~~gF~---~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG~ 138 (1070)
..|..-|+|+|-..+|||+|++.|. |....|. .-.....-..||=+-...+... .....+.|+||||.
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~---~~~~~i~~iDtPGh 134 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYE---TAKRHYAHVDCPGH 134 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEc---CCCeEEEEEECCCc
Q ss_pred cccCCCCcchhHHHHHHHhhhhheeecCCCCCCHHHhhhhHHHHHh
Q 001482 139 DAYDQTGTYSTQIFSLAVLLSSMFIYNQMGGIDESAIDRLSLVTQM 184 (1070)
Q Consensus 139 ~~~~~~~~~d~~ifaL~~llSS~~IyN~~~~i~~~~l~~L~~~~~~ 184 (1070)
. .-....+.+++..=.-++|......+...+.+++.++..+
T Consensus 135 ~-----~f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~ 175 (447)
T PLN03127 135 A-----DYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQV 175 (447)
T ss_pred c-----chHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHc
No 488
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=91.26 E-value=0.33 Score=50.71 Aligned_cols=55 Identities=24% Similarity=0.201 Sum_probs=0.0
Q ss_pred EEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEeeccccccccCCCCceeEEEeeccc
Q 001482 74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEG 137 (1070)
Q Consensus 74 vsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~~~p~~~~~~~g~~~~~~llDteG 137 (1070)
|.|+|..++|||.|++++.... | +..-..|.|.-...... .+|..+.+-++||.|
T Consensus 6 i~~vG~~~vGKTsli~~~~~~~--f---~~~~~~t~~~~~~~~~~----~~~~~~~l~i~Dt~G 60 (191)
T cd01875 6 CVVVGDGAVGKTCLLICYTTNA--F---PKEYIPTVFDNYSAQTA----VDGRTVSLNLWDTAG 60 (191)
T ss_pred EEEECCCCCCHHHHHHHHHhCC--C---CcCCCCceEeeeEEEEE----ECCEEEEEEEEECCC
No 489
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=91.25 E-value=0.23 Score=52.36 Aligned_cols=32 Identities=25% Similarity=0.504 Sum_probs=0.0
Q ss_pred EEEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEee
Q 001482 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLW 114 (1070)
Q Consensus 73 vvsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~ 114 (1070)
||+++|+.++||||||+.|+|.. +.+.|--.|
T Consensus 31 iv~llG~NGaGKTTlLkti~Gl~----------~~~~G~I~~ 62 (237)
T COG0410 31 IVALLGRNGAGKTTLLKTIMGLV----------RPRSGRIIF 62 (237)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC----------CCCCeeEEE
No 490
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=91.19 E-value=0.16 Score=50.63 Aligned_cols=21 Identities=33% Similarity=0.589 Sum_probs=0.0
Q ss_pred EEEeecCCCCChhHHHHHHhC
Q 001482 73 VVSVCGRARQGKSFILNQLLG 93 (1070)
Q Consensus 73 vvsv~G~~r~GKS~lln~l~~ 93 (1070)
+++|+|+.++|||+|++.|.|
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G 48 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAG 48 (144)
T ss_pred EEEEECCCCCCHHHHHHHHcC
No 491
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=91.17 E-value=0.15 Score=53.99 Aligned_cols=21 Identities=24% Similarity=0.563 Sum_probs=0.0
Q ss_pred EEEeecCCCCChhHHHHHHhC
Q 001482 73 VVSVCGRARQGKSFILNQLLG 93 (1070)
Q Consensus 73 vvsv~G~~r~GKS~lln~l~~ 93 (1070)
+++|+|+.|+||||||+.|.|
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G 48 (205)
T cd03226 28 IIALTGKNGAGKTTLAKILAG 48 (205)
T ss_pred EEEEECCCCCCHHHHHHHHhc
No 492
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=91.12 E-value=0.16 Score=51.70 Aligned_cols=21 Identities=33% Similarity=0.494 Sum_probs=0.0
Q ss_pred EEEeecCCCCChhHHHHHHhC
Q 001482 73 VVSVCGRARQGKSFILNQLLG 93 (1070)
Q Consensus 73 vvsv~G~~r~GKS~lln~l~~ 93 (1070)
+|+|+|+.++|||+||+.|.|
T Consensus 28 ~~~l~G~nGsGKSTLl~~i~G 48 (163)
T cd03216 28 VHALLGENGAGKSTLMKILSG 48 (163)
T ss_pred EEEEECCCCCCHHHHHHHHhC
No 493
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.12 E-value=0.15 Score=54.59 Aligned_cols=21 Identities=19% Similarity=0.332 Sum_probs=0.0
Q ss_pred EEEeecCCCCChhHHHHHHhC
Q 001482 73 VVSVCGRARQGKSFILNQLLG 93 (1070)
Q Consensus 73 vvsv~G~~r~GKS~lln~l~~ 93 (1070)
+++|+|+.|+||||||+.|.|
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G 48 (220)
T cd03265 28 IFGLLGPNGAGKTTTIKMLTT 48 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhC
No 494
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=91.12 E-value=16 Score=39.79 Aligned_cols=129 Identities=22% Similarity=0.323 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001482 695 AEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYL 774 (1070)
Q Consensus 695 ~e~e~ei~el~~kie~~e~~l~~l~~el~e~e~ki~~~e~e~~~l~~ei~~l~~~le~~~~~i~~le~~l~~le~e~~~l 774 (1070)
...+.+..++..++.+.+.+....+..+...+..+..+..+.+..+.+-..|......+...+..+.........+...+
T Consensus 1 E~aEr~k~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~L 80 (246)
T PF00769_consen 1 EEAEREKQELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQL 80 (246)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 001482 775 EQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEF 823 (1070)
Q Consensus 775 e~~l~~~~~~~ee~~e~l~~~e~e~~~~~e~~~~l~~e~~~a~~ek~~~ 823 (1070)
..++......+..+.......+.+...+...+..++.....+.....++
T Consensus 81 e~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak~~L~~~ 129 (246)
T PF00769_consen 81 EQELREAEAEIARLEEESERKEEEAEELQEELEEAREDEEEAKEELLEV 129 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 495
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=91.11 E-value=0.23 Score=52.11 Aligned_cols=32 Identities=22% Similarity=0.290 Sum_probs=0.0
Q ss_pred EEEeecCCCCChhHHHHHHhCCCCCccccCCCCcccceEEee
Q 001482 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLW 114 (1070)
Q Consensus 73 vvsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~giw~~ 114 (1070)
+++|+|+.|+|||||++.|.|.. +.+.|-..|
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~----------~~~~G~i~~ 59 (195)
T PRK13541 28 ITYIKGANGCGKSSLLRMIAGIM----------QPSSGNIYY 59 (195)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC----------CCCCcEEEE
No 496
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=91.10 E-value=44 Score=40.70 Aligned_cols=308 Identities=12% Similarity=0.086 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001482 615 VCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTL 694 (1070)
Q Consensus 615 l~~Ei~~Lk~~l~~le~~l~~l~~e~q~lq~el~e~k~~le~e~~elk~~le~~~~~le~~~~~l~~~l~~lr~ele~~i 694 (1070)
+..++.++...+..+...+..++.+....-..-...++-.......++..+..+...+...-........ .+-+..
T Consensus 114 lk~~l~e~~~El~~l~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~sL~ekl~lld~al~~~~~~~~~~~~----~fl~rt 189 (511)
T PF09787_consen 114 LKIRLQELDQELRRLRRQLEELQNEKSRILSDESTVSRLQNGAPRSLQEKLSLLDEALKREDGNAITAVV----EFLKRT 189 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCccHHHHHH----HHHHHH
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q 001482 695 AEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQ-DKVY 773 (1070)
Q Consensus 695 ~e~e~ei~el~~kie~~e~~l~~l~~el~e~e~ki~~~e~e~~~l~~ei~~l~~~le~~~~~i~~le~~l~~le~-e~~~ 773 (1070)
...+.....+..... +...+.....+..++...++.+.......+.++.+.... +...+..-++.+..|.. ....
T Consensus 190 l~~e~~~~~L~~~~~-A~~~~~~~l~~~~e~~~~l~l~~~~~~~~~~el~~Yk~k---A~~iLq~kEklI~~LK~~~~~~ 265 (511)
T PF09787_consen 190 LKKEIERQELEERPK-ALRHYIEYLRESGELQEQLELLKAEGESEEAELQQYKQK---AQRILQSKEKLIESLKEGCLEE 265 (511)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH---HHHHhcCHHHHHHHHHhccccc
Q ss_pred HHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001482 774 LEQK------YKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQ 847 (1070)
Q Consensus 774 le~~------l~~~~~~~ee~~e~l~~~e~e~~~~~e~~~~l~~e~~~a~~ek~~~q~~~~e~~~~ie~l~~~i~~Le~e 847 (1070)
--.. +.....+.+.+++.+..++..+..+..++.....++..........-+.........-..+.++..+..+
T Consensus 266 ~~~~~~~~~el~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~~~~~~~~~~~~~~~~~~~~~~~~e~e~~l~~~e 345 (511)
T PF09787_consen 266 GFDSSTNSIELEELKQERDHLQEEIQLLERQIEQLRAELQDLEAQLEGEQESFREQPQELSQQLEPELTTEAELRLYYQE 345 (511)
T ss_pred ccccccchhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001482 848 KTDLTNEVNRIRESELEALSKVALLEARVEEREKEIESLLE--SNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLE 925 (1070)
Q Consensus 848 ~~~l~~el~~l~~~~~~~~~~~~~le~~v~ele~eie~L~~--~~~e~r~~~i~~le~~Le~er~~~~ea~~r~~~L~~q 925 (1070)
...+.++..+....... ++...+.++..+..++... - .........+..+.+.|-.-...++.+......|..+
T Consensus 346 l~~~~ee~~~~~s~~~~---k~~~ke~E~q~lr~~l~~~-~~~s~~~elE~rl~~lt~~Li~KQ~~lE~l~~ek~al~lq 421 (511)
T PF09787_consen 346 LYHYREELSRQKSPLQL---KLKEKESEIQKLRNQLSAR-ASSSSWNELESRLTQLTESLIQKQTQLESLGSEKNALRLQ 421 (511)
T ss_pred HHHHHHHHHHhcChHHH---HHHHHHHHHHHHHHHHHHH-hccCCcHhHHHHHhhccHHHHHHHHHHHHHHhhhhhcccc
Q ss_pred HHHHHHHHH
Q 001482 926 VQSAQAKLD 934 (1070)
Q Consensus 926 l~~~~~~l~ 934 (1070)
++.+...+.
T Consensus 422 lErl~~~l~ 430 (511)
T PF09787_consen 422 LERLETQLK 430 (511)
T ss_pred HHHHHHHHH
No 497
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=91.09 E-value=0.15 Score=54.53 Aligned_cols=21 Identities=29% Similarity=0.496 Sum_probs=0.0
Q ss_pred EEEeecCCCCChhHHHHHHhC
Q 001482 73 VVSVCGRARQGKSFILNQLLG 93 (1070)
Q Consensus 73 vvsv~G~~r~GKS~lln~l~~ 93 (1070)
+++|+|+.|+||||||+.|.|
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G 50 (220)
T cd03263 30 IFGLLGHNGAGKTTTLKMLTG 50 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhC
No 498
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=91.08 E-value=0.21 Score=56.46 Aligned_cols=36 Identities=28% Similarity=0.418 Sum_probs=0.0
Q ss_pred EEEeecCCCCChhHHHHHHhCCCCCccccCCCCcccce-EEeecccc
Q 001482 73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKG-LWLWSAPL 118 (1070)
Q Consensus 73 vvsv~G~~r~GKS~lln~l~~~~~gF~~~~~~~~~t~g-iw~~~~p~ 118 (1070)
+++++||.|+|||||++.|+|.. +.+.| ||+...|+
T Consensus 35 i~gllGpNGaGKSTLl~~l~Gl~----------~p~~G~v~i~G~~~ 71 (306)
T PRK13537 35 CFGLLGPNGAGKTTTLRMLLGLT----------HPDAGSISLCGEPV 71 (306)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC----------CCCceEEEECCEec
No 499
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=91.06 E-value=0.16 Score=51.16 Aligned_cols=19 Identities=37% Similarity=0.578 Sum_probs=0.0
Q ss_pred EEEeecCCCCChhHHHHHH
Q 001482 73 VVSVCGRARQGKSFILNQL 91 (1070)
Q Consensus 73 vvsv~G~~r~GKS~lln~l 91 (1070)
||||+|..+|||||+|..+
T Consensus 34 VisIIGsSGSGKSTfLRCi 52 (256)
T COG4598 34 VISIIGSSGSGKSTFLRCI 52 (256)
T ss_pred EEEEecCCCCchhHHHHHH
No 500
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.06 E-value=0.16 Score=54.03 Aligned_cols=21 Identities=24% Similarity=0.510 Sum_probs=0.0
Q ss_pred EEEeecCCCCChhHHHHHHhC
Q 001482 73 VVSVCGRARQGKSFILNQLLG 93 (1070)
Q Consensus 73 vvsv~G~~r~GKS~lln~l~~ 93 (1070)
+++|+|+.|+||||||+.|.|
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G 48 (210)
T cd03269 28 IFGLLGPNGAGKTTTIRMILG 48 (210)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Done!