Query 001485
Match_columns 1070
No_of_seqs 275 out of 1293
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 02:00:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001485.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001485hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK14908 glycyl-tRNA synthetas 100.0 0E+00 0E+00 3162.8 95.4 984 72-1067 3-1000(1000)
2 PRK01233 glyS glycyl-tRNA synt 100.0 1E-210 2E-215 1853.6 66.8 677 386-1069 1-682 (682)
3 TIGR00211 glyS glycyl-tRNA syn 100.0 2E-210 5E-215 1853.1 67.8 683 386-1068 3-691 (691)
4 COG0751 GlyS Glycyl-tRNA synth 100.0 7E-211 1E-215 1822.1 61.4 682 385-1069 2-691 (691)
5 PF02092 tRNA_synt_2f: Glycyl- 100.0 4E-182 8E-187 1576.5 55.0 543 389-933 1-547 (548)
6 TIGR00388 glyQ glycyl-tRNA syn 100.0 8E-163 2E-167 1275.3 27.4 288 74-361 1-292 (293)
7 COG0752 GlyQ Glycyl-tRNA synth 100.0 1E-162 2E-167 1260.1 27.4 291 71-361 2-296 (298)
8 PRK09348 glyQ glycyl-tRNA synt 100.0 4E-161 8E-166 1258.2 26.7 282 72-353 2-283 (283)
9 cd00733 GlyRS_alpha_core Class 100.0 2E-160 4E-165 1250.8 25.8 279 75-353 1-279 (279)
10 PF02091 tRNA-synt_2e: Glycyl- 100.0 4E-160 8E-165 1256.3 14.9 284 76-359 1-284 (284)
11 cd07956 Anticodon_Ia_Arg Antic 99.4 3.7E-13 8E-18 135.8 10.0 114 955-1068 33-151 (156)
12 smart00836 DALR_1 DALR anticod 99.3 1.2E-12 2.6E-17 126.1 6.8 102 964-1065 4-114 (122)
13 PF05746 DALR_1: DALR anticodo 98.9 5.6E-10 1.2E-14 106.9 3.5 104 961-1064 1-110 (119)
14 cd00768 class_II_aaRS-like_cor 97.0 0.0014 3.1E-08 67.6 6.9 115 117-237 72-211 (211)
15 PRK13902 alaS alanyl-tRNA synt 96.9 0.0065 1.4E-07 77.6 12.7 266 55-336 41-354 (900)
16 PRK01584 alanyl-tRNA synthetas 96.6 0.0034 7.3E-08 76.6 7.2 169 74-250 1-248 (594)
17 TIGR03683 A-tRNA_syn_arch alan 96.4 0.021 4.5E-07 73.1 12.2 176 72-254 54-263 (902)
18 PRK00252 alaS alanyl-tRNA synt 96.3 0.015 3.2E-07 74.2 10.0 164 73-250 1-243 (865)
19 TIGR00295 conserved hypothetic 96.2 0.039 8.4E-07 57.2 10.7 100 739-842 12-124 (164)
20 PRK12705 hypothetical protein; 96.0 0.031 6.7E-07 67.4 10.3 101 733-843 315-416 (508)
21 PRK12704 phosphodiesterase; Pr 95.6 0.059 1.3E-06 65.4 10.8 101 733-843 327-428 (520)
22 PF01966 HD: HD domain; Inter 95.1 0.05 1.1E-06 50.7 6.4 101 742-843 2-121 (122)
23 TIGR00488 putative HD superfam 95.1 0.12 2.5E-06 53.1 9.4 99 741-847 9-126 (158)
24 PLN02900 alanyl-tRNA synthetas 95.0 0.072 1.6E-06 68.6 9.3 168 73-250 10-263 (936)
25 TIGR03319 YmdA_YtgF conserved 95.0 0.12 2.6E-06 62.7 10.6 191 611-843 227-422 (514)
26 PRK07152 nadD putative nicotin 94.6 0.15 3.2E-06 58.7 9.7 95 741-843 197-308 (342)
27 TIGR00456 argS arginyl-tRNA sy 94.6 0.27 5.9E-06 60.3 12.4 109 954-1063 442-556 (566)
28 PRK12703 tRNA 2'-O-methylase; 94.4 0.25 5.5E-06 57.0 10.9 96 741-843 188-294 (339)
29 smart00471 HDc Metal dependent 94.3 0.61 1.3E-05 42.7 11.2 104 740-847 4-118 (124)
30 COG0013 AlaS Alanyl-tRNA synth 94.0 0.15 3.1E-06 64.9 8.5 176 73-253 5-250 (879)
31 PRK00106 hypothetical protein; 93.9 0.28 6E-06 59.8 10.3 190 611-842 248-442 (535)
32 PRK12451 arginyl-tRNA syntheta 93.7 0.16 3.5E-06 62.2 7.9 105 956-1063 445-552 (562)
33 COG0018 ArgS Arginyl-tRNA synt 93.6 0.32 6.9E-06 59.9 10.3 115 947-1063 446-567 (577)
34 cd00673 AlaRS_core Alanyl-tRNA 93.3 1.1 2.3E-05 49.5 12.4 157 78-244 3-232 (232)
35 COG1418 Predicted HD superfami 91.2 0.51 1.1E-05 51.5 7.1 116 725-845 21-146 (222)
36 cd00077 HDc Metal dependent ph 89.3 8.2 0.00018 35.9 12.6 108 740-847 2-128 (145)
37 TIGR00277 HDIG uncharacterized 88.9 2.3 5.1E-05 37.1 8.1 75 740-817 4-78 (80)
38 TIGR00344 alaS alanine--tRNA l 88.6 1.3 2.8E-05 57.1 8.6 159 81-253 4-241 (851)
39 TIGR03401 cyanamide_fam HD dom 88.5 3 6.4E-05 45.9 10.2 99 740-844 55-166 (228)
40 PRK01611 argS arginyl-tRNA syn 87.9 0.86 1.9E-05 55.2 6.2 103 959-1063 391-497 (507)
41 PLN02286 arginine-tRNA ligase 86.7 3.9 8.4E-05 50.6 11.0 108 954-1063 454-566 (576)
42 PTZ00326 phenylalanyl-tRNA syn 85.6 3.8 8.3E-05 49.8 9.8 119 119-250 356-487 (494)
43 TIGR03671 cca_archaeal CCA-add 84.3 8.2 0.00018 46.0 11.5 118 387-518 280-398 (408)
44 PRK09537 pylS pyrolysyl-tRNA s 83.5 4.3 9.4E-05 48.4 8.9 159 76-250 206-403 (417)
45 PRK10119 putative hydrolase; P 80.3 13 0.00027 41.3 10.5 102 737-844 22-132 (231)
46 TIGR02367 PylS pyrrolysyl-tRNA 79.8 3.6 7.8E-05 49.4 6.5 161 76-253 242-442 (453)
47 PRK04172 pheS phenylalanyl-tRN 78.9 12 0.00025 45.6 10.6 124 112-250 342-477 (489)
48 PRK13300 tRNA CCA-pyrophosphor 75.2 10 0.00022 45.7 8.6 131 386-533 282-413 (447)
49 COG1713 Predicted HD superfami 72.9 14 0.00031 39.8 8.0 108 741-868 18-146 (187)
50 COG2206 c-di-GMP phosphodieste 68.6 29 0.00063 40.3 10.1 102 742-845 150-273 (344)
51 cd00670 Gly_His_Pro_Ser_Thr_tR 68.5 17 0.00036 38.9 7.7 58 117-175 85-149 (235)
52 PF01409 tRNA-synt_2d: tRNA sy 67.6 43 0.00093 37.4 10.8 163 74-251 17-237 (247)
53 COG1011 Predicted hydrolase (H 59.6 7.6 0.00017 40.8 3.0 87 110-205 105-199 (229)
54 TIGR00459 aspS_bact aspartyl-t 58.8 6.8 0.00015 48.7 2.8 60 195-254 465-551 (583)
55 COG3437 Response regulator con 52.8 42 0.00091 39.5 7.6 115 728-846 174-311 (360)
56 COG1746 CCA1 tRNA nucleotidylt 50.5 72 0.0016 38.5 9.1 129 386-533 283-412 (443)
57 COG2024 Phenylalanyl-tRNA synt 49.7 19 0.0004 42.6 4.2 130 118-271 205-360 (536)
58 TIGR00094 tRNA_TruD_broad tRNA 49.6 30 0.00065 40.8 6.0 87 483-573 22-120 (387)
59 TIGR01428 HAD_type_II 2-haloal 48.7 9.4 0.0002 39.7 1.6 45 155-206 148-193 (198)
60 PRK04173 glycyl-tRNA synthetas 48.7 46 0.001 40.3 7.5 128 110-239 175-334 (456)
61 TIGR00470 sepS O-phosphoseryl- 47.7 25 0.00054 42.9 4.9 124 118-253 205-343 (533)
62 PLN02530 histidine-tRNA ligase 47.3 1.7E+02 0.0037 35.8 12.0 54 118-175 162-220 (487)
63 PRK09449 dUMP phosphatase; Pro 46.0 13 0.00029 39.3 2.2 47 154-205 149-196 (224)
64 PRK10748 flavin mononucleotide 45.7 17 0.00037 39.4 3.0 83 111-206 120-209 (238)
65 PRK09456 ?-D-glucose-1-phospha 44.4 14 0.0003 38.7 2.1 86 110-202 90-181 (199)
66 PF12917 HD_2: HD containing h 40.2 36 0.00077 37.5 4.3 124 734-860 23-156 (215)
67 TIGR02253 CTE7 HAD superfamily 40.2 15 0.00031 38.7 1.4 82 110-202 100-191 (221)
68 TIGR01993 Pyr-5-nucltdase pyri 39.5 13 0.00029 38.2 0.9 42 154-202 140-181 (184)
69 KOG3109 Haloacid dehalogenase- 37.7 31 0.00068 38.3 3.4 105 74-211 103-210 (244)
70 PF09113 N-glycanase_C: Peptid 37.2 14 0.00029 38.2 0.6 23 188-210 73-96 (141)
71 PF00152 tRNA-synt_2: tRNA syn 36.7 24 0.00052 40.5 2.6 57 195-251 245-328 (335)
72 PF10847 DUF2656: Protein of u 34.6 55 0.0012 33.5 4.3 59 337-400 55-127 (132)
73 TIGR02252 DREG-2 REG-2-like, H 33.5 22 0.00047 37.1 1.4 43 154-202 159-201 (203)
74 PF10490 CENP-F_C_Rb_bdg: Rb-b 32.4 11 0.00024 32.0 -0.7 18 852-869 27-44 (49)
75 PRK00488 pheS phenylalanyl-tRN 29.8 3.2E+02 0.007 32.3 10.1 166 75-250 109-328 (339)
76 KOG1576 Predicted oxidoreducta 28.2 29 0.00064 39.6 1.4 66 115-193 89-160 (342)
77 PF06275 DUF1031: Protein of u 27.5 1E+02 0.0022 28.7 4.3 55 470-534 8-62 (80)
78 cd02575 PseudoU_synth_EcTruD P 26.8 1E+02 0.0022 34.8 5.3 60 484-546 6-72 (253)
79 PLN02563 aminoacyl-tRNA ligase 26.5 80 0.0017 41.9 5.0 25 68-92 74-98 (963)
80 TIGR00468 pheS phenylalanyl-tR 26.3 1E+03 0.022 27.3 14.1 162 75-250 73-281 (294)
81 TIGR00457 asnS asparaginyl-tRN 25.9 29 0.00062 42.0 0.9 19 233-251 424-442 (453)
82 cd02552 PseudoU_synth_TruD_lik 25.3 1.2E+02 0.0025 33.8 5.3 49 494-545 28-77 (232)
83 PF06159 DUF974: Protein of un 24.2 53 0.0011 36.7 2.4 30 120-156 86-115 (249)
84 PRK00984 truD tRNA pseudouridi 24.0 1.1E+02 0.0024 35.8 5.1 61 484-547 23-90 (341)
85 TIGR00458 aspS_arch aspartyl-t 23.6 41 0.00088 40.4 1.6 55 165-254 365-420 (428)
86 PRK13480 3'-5' exoribonuclease 23.1 5.3E+02 0.011 30.1 10.2 113 733-849 152-284 (314)
87 cd02577 PSTD1 PSTD1: Pseudouri 23.1 1.5E+02 0.0032 34.6 5.8 61 484-547 6-73 (319)
88 TIGR00418 thrS threonyl-tRNA s 22.9 1.1E+02 0.0024 37.7 5.1 53 118-175 280-344 (563)
89 PRK00037 hisS histidyl-tRNA sy 22.6 1.4E+02 0.0031 35.1 5.7 76 91-175 74-154 (412)
90 PRK14869 putative manganese-de 22.4 2.2E+02 0.0047 35.1 7.4 29 655-687 267-295 (546)
91 PRK01310 hypothetical protein; 21.5 2.1E+02 0.0046 28.3 5.7 62 451-522 40-102 (104)
92 PRK12444 threonyl-tRNA synthet 20.1 3.6E+02 0.0078 34.1 8.8 121 115-241 350-527 (639)
No 1
>PRK14908 glycyl-tRNA synthetase; Provisional
Probab=100.00 E-value=0 Score=3162.78 Aligned_cols=984 Identities=43% Similarity=0.728 Sum_probs=946.8
Q ss_pred CcchHHHHHHHHHHHHhhcCceeeeccccccccccCCHHHHhhhcCCCcceEEeecCCCCCCCCCCCCCCccccceeeeE
Q 001485 72 SVPTFQQAIQRLQEYWASVGCSVMQCSNTEVGAGTMNPLTFLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRLQRHTQFQ 151 (1070)
Q Consensus 72 ~~~~~q~~i~~l~~~w~~~gc~~~q~~~~e~gagt~~p~t~~~~l~~~~~~~ayv~p~~rp~d~ryg~npnrl~~~~q~q 151 (1070)
++|||||+|++||+||+++||+|+||||+|||||||||+||||+||||||++|||||||||+|||||+||||||||||||
T Consensus 3 ~~~~~q~~i~~l~~~w~~~gc~~~qp~~~e~gagt~~p~t~~~~l~~~~~~~ayv~p~~rp~d~ryg~npnrl~~~~q~q 82 (1000)
T PRK14908 3 QPLTMQDMLLALLRYWSEQGCIIHQGYDLEVGAGTFNPATFLRVLGPEPWRVAYVEPSRRPDDGRYGQNPNRLQTYTQFQ 82 (1000)
T ss_pred CcccHHHHHHHHHHHHHHCCCEEECCcccccccCcCCHHHHHhhcCCCCCcccccCCCCCCCCCCcCCCchhhhhheeeE
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCcchHHHHHHHHHhcCCCCCCCceeEecCCCCCCccccccccceeeecCeeeeeeehhhhcCCcccCcceeeeh
Q 001485 152 VILKPDPGNSQDLFIRSLSALGIDVTEHDIRFVEDNWESPVLGAWGLGWEIWMDGMEITQFTYFQQAGSLQLSPVSVEIT 231 (1070)
Q Consensus 152 vi~kp~p~~~q~lyl~sl~~~gi~~~~hdirfved~we~p~lga~glgwevw~~gmeitqftyfqq~gg~~~~~~~~eit 231 (1070)
|||||||+|+|+|||+||++||||+++|||||||||||||||||||||||||||||||||||||||+||++|+||++|||
T Consensus 83 vi~kp~p~~~q~~yl~sl~~~gi~~~~~dirfved~we~p~lga~glgwevw~~gmeitqftyfqq~gg~~~~~~~~eit 162 (1000)
T PRK14908 83 VILKPVPGNPQELYLESLKAIGIDLRDHDIRFVHDDWENPTIGAWGLGWEVWLDGMEITQFTYFQQAGGKPLDPISGEIT 162 (1000)
T ss_pred EEECCCCccHHHHHHHHHHHcCCCccccceeEeecCCCCCcccccccccEEEECCeeeeeeeeehhcCCeeccccceeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHhCCCceeeeeeCCCCceecccccchhhhhccccccCCHHHHHHHHHHHHHHHHHHHHcCCCcchhhhHHh
Q 001485 232 YGLERILMLLQGVDHFKKIQYADGITYGELFLENEKEMSAYYLEHANVHHLQKQFDFFEEESRSLLASGLAIPAYDQLLK 311 (1070)
Q Consensus 232 ygler~~m~~q~~~~~~~~~~~~~~~yg~~~~~~e~e~s~y~~~~~~~~~~~~~f~~~~~e~~~~~~~~l~~pay~~~lk 311 (1070)
|||||||||||+|||||||.||+++||||||+|+|+|||+||||+||+++|+++|++||+||++|++++||+||||||||
T Consensus 163 ygler~~m~~q~~~~~~~~~~~~~~~y~~~~~~~e~~~s~~~~~~~~~~~~~~~f~~~~~e~~~~~~~~l~~pay~~~~k 242 (1000)
T PRK14908 163 YGIERIAMYLQKVNHFKDIAWNDGLTYGEIFQQAEYEMSRYNFDDANTEMWLKHFEDYAAEALRLLDAGLPVPAYDFVLK 242 (1000)
T ss_pred ccHHHHHHHHhCCCeeeeeecCCCCcchhhccccHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccccccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCccCCCCCCCCCChhhHHhhhcCCCCCccchhh
Q 001485 312 TSHAFNILDSRGFVGVTERARYFGRMRSLARQCAQLWLKTRKSLGHPLGIVSEPVDLPCPKELLEAAVKKLPDDPRLFVL 391 (1070)
Q Consensus 312 ~sh~fn~ldar~~~~~~er~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lLl 391 (1070)
|||+|||||||||||||||++||+|||+||+.||++|+++|+++||||+...+|++++++. ..|+++++.+|||
T Consensus 243 ~sh~fn~ldar~~i~~~er~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~dlLl 316 (1000)
T PRK14908 243 ASHAFNILDARGAISVTERTRYIARIRQLARAVADLYVEWREELGFPLLKVPPPPAAVTPK------KTPDICGPETLLF 316 (1000)
T ss_pred HHHHhhhhhhccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCCCCCC------CCCCCCCccCEEE
Confidence 9999999999999999999999999999999999999999999999998765543332222 3446688999999
Q ss_pred hhcccCCChHhHHHHHHHHHHHHHHHHHhCCCCCCcceeecccccceeeecccCccCcchhhhhcCCccccccccCCCCc
Q 001485 392 EIGTEEMPPQDVVNASQQLKDLMLQLLNKQKLSHGEVQAFGTPRRLVVFVESLCQKQSENEFEARGPPVSKAFDQQGNPT 471 (1070)
Q Consensus 392 EIGtEELPa~~v~~a~~ql~~~~~~~L~~~rL~~~~i~~f~TPRRLav~V~~l~~~q~d~~~e~kGP~v~~Afd~~G~pT 471 (1070)
|||||||||+++.++.+||++.+.+.|++++|+|++|++|+|||||||+|+||+++|+|.++++||||+++|||++|+||
T Consensus 317 EIGtEELPA~~~~~a~~ql~~~~~~~L~~~~L~~~~i~~f~TPRRLav~v~~l~~~q~d~~~e~kGP~~~~AfD~dG~pT 396 (1000)
T PRK14908 317 EIGSEELPATFVPIGIQQLESALRELLADTRLGYEKLEVLGTPRRLALLVEDVAPREPDAEREKRGPRLSAAFDADGTPT 396 (1000)
T ss_pred EcccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcCceEEEecCcEeEEEecCCcccCCCceeeeeCCcHHHhCccCCCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCCccCceE---------EEeCCeeEEEEEEEecchhHHHHHHHHHHHHHhcCCCCcccccC-CCCcccc
Q 001485 472 KAVEGFCQRYAVPIDSLVT---------KAAGKTEYVYARVKETARLALEVLSEDVPSIISKLSFPKSMRWN-SQVMFSR 541 (1070)
Q Consensus 472 kAa~GFak~~Gv~~~~L~~---------~~~~kgeYv~~~~~~~G~~t~evL~eil~~iI~~L~fpKsMRWg-~~~~F~R 541 (1070)
||++|||||||+++++|.+ ++++||+|+|++++++|++|.++|+++++++|++|||||+|||| ++++|+|
T Consensus 397 kAa~GFars~Gv~~~dL~~~~~~~~~~~~~~kg~eyl~~~k~~~G~~t~elL~eil~~~I~~L~fpKsMRWg~~~~~FvR 476 (1000)
T PRK14908 397 PAGEGFFRSQGVDISHLSALDQDGAIEIREINGVEYLFLVRPEPGRDAAAILANELPELIQSLRFPKKMRWDDPGLSYAR 476 (1000)
T ss_pred HHHHHHHHHcCCCHHHHHHhhcccccccccCCCcEEEEEEEEECCeEHHHHHHHHHHHHHHcCCCCCcceeCCCCcEEec
Confidence 9999999999999999988 55555699999999999999999999999999999999999999 9999999
Q ss_pred hhhhHHHhcCCceeeeEEcceeeCCcccccccCCCCcEEeCChhHHHHHHHhCCeeccHHHHHHHHHHHHHHHHHhcCCe
Q 001485 542 PIRWIMALHGDVVVPFMFAGVLSGNLSYGLRNTPLATVKVQNAESYAGVMRNAGVKIKIEDRRKTIFDRSNALAKSVNGR 621 (1070)
Q Consensus 542 PIrwIvaL~g~~Vvp~~~~gi~Sgn~T~GHRf~~~~~i~I~~a~~Y~~~L~~~~VIvD~~eRr~~I~~qi~~lA~~~g~~ 621 (1070)
||||||||||++||||+++||+|||+|+||||++++.|+|++|++|.+.|++++||+|+++||++|++|++++|+++|++
T Consensus 477 PIrWIvaLlg~eVIp~~i~gi~Sg~~T~GHRfl~~~~i~I~~a~~Y~~~L~~~~VIvD~~eRr~~I~~qi~~la~~~g~~ 556 (1000)
T PRK14908 477 PIRWLVALYGDQIVPISVGTLASGRTTRGHRQLDPPPVEIPSADGYVETLRQACVILSPKERREIIVQGLQNLAADVQID 556 (1000)
T ss_pred hHHHHHHHcCCceeEEEEecEEecCcccccccCCCCCeEeCCHHHHHHHHHhCCEECCHHHHHHHHHHHHHHHHHHcCCe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCchHHHhhccccCCceeecccCccCCCCcHHHHHHHHHhCcceeEEECCCCCccccEEEEEcCCCCchhhhchhhh
Q 001485 622 IIFEESLLNEVVNLVEAPVPVLGEFEDSFLELPEDLLTVVMKKHQKYFALTDDKGRLLPYFIAVANGAINEMVVRKGNEA 701 (1070)
Q Consensus 622 v~~de~LLeEVt~LVE~P~~l~G~Fde~FL~LP~EVLitvMk~HQKYFpv~d~~G~Llp~FI~VsN~~~~~~~V~~GNEr 701 (1070)
+..|++||||||+|||||++++|+||++||+||+|||||+|++|||||||+|++|+|+|+||+|+|+.++. .|++||||
T Consensus 557 v~~de~LLdEVt~LVE~P~al~G~Fde~FL~LP~EVLit~Mk~HQRYFpv~d~~G~Llp~FI~VsN~~~~~-~Vi~GNEr 635 (1000)
T PRK14908 557 AIAEPRLIDEVTNLVEHPFVILGQFDEKFLELPKELLIAEMVKHQRYFPVRDAQGTLLNHFVIVADGSPDD-EIVRGNEK 635 (1000)
T ss_pred eCCCHHHHHHHHhccCCCeeeEEeeCHHHhCCCHHHHHHHHHHcceEEEEECCCCCccceEEEEECCCCcc-ceeecchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999997655 89999999
Q ss_pred HhhhhcccchhhHHhhhcCChHHHHhcccCcccccCCCCHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHhhhhccc
Q 001485 702 VLRARYEDAKFFYEMDTRKKFADFQGQLKGILFHEKLGTMLDKTMRVQNMVRKLSLDLGINEDMLQIVQEAASLAMSDLA 781 (1070)
Q Consensus 702 VLrARL~DA~FF~~~DlK~~Le~~~~kLk~VvF~~kLGSl~DK~~RI~~La~~La~~l~~~~~~~~~~~RAA~L~KaDL~ 781 (1070)
||||||+||+|||++|+|+||++|+++|++|+||+|||||+|||+||++||.+||+.+|.+.+ ..+.|||.||||||+
T Consensus 636 VLrARL~DA~FF~~~DlK~~L~~~vekL~~VvFq~kLGS~~dKv~Ri~~La~~La~~l~~~~~--~~~~RAA~LsKaDLv 713 (1000)
T PRK14908 636 VLRARLTDGAFLFKADLKTPLETFVEKLKSVTYFEALGSLADKVERIKAHAEELAALLPLSAR--ETLDRAAELCKFDLV 713 (1000)
T ss_pred hhHhHHhHHHHHHHHhccCCHHHHHHHhCceEeehhcCCHHHHHHHHHHHHHHHHHHhCCChh--HHHHHHHHHhhhhcc
Confidence 999999999999999999999999999999999999999999999999999999999988643 235899999999999
Q ss_pred cchhhcChhhhHHHHHHHHHhCCCCHHHHHHHHhhcCCCCCCCCCCCcchhhHHHHhhhHHHHHHhhhcCCCCCCCCChh
Q 001485 782 TSVVMEFTSLAGVMACHYALRDGYSQQIAEALLEINLPRFSGDVLPKTDVGTVLAVADRLDTLVGLFAAGCQPSSTNDPF 861 (1070)
Q Consensus 782 T~MV~EFPELQGiMG~~YA~~~GE~~~VA~AI~EhYlPr~agD~LP~t~~G~iLSlADKlDtLvG~F~iG~~PTGSkDPf 861 (1070)
|+||+||||||||||+|||+++||+++||+||+|||+||++||.||+|++|++||||||||||+|||++|++||||+|||
T Consensus 714 T~MV~EFPELQGiMG~yYA~~~GE~~~VA~AI~EhYlPr~agD~LP~s~~G~ilalADKlDTLvG~FaiG~~PTGSkDPf 793 (1000)
T PRK14908 714 SQMVNEFPELQGIMGRYYAQRAGEPEAVAQALGEHELPRTAGDSLPASTTGALLSLADRLDNLLGCFALGLKPTSSSDPY 793 (1000)
T ss_pred cchhccChHhhHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHhHHHHHHHHHhCCCCCCHHHHHHHHHhhCC---CCcCccchHHHHHHHHHHHHHHHhhcCCCHHHHHHhhcCCCCC
Q 001485 862 GLRRISYGLVQILIEKDKNLDLELALRLAADVQP---ITVDASTINDVHQFVTRRLEQFLVDKGISPEIVRSVLSERANL 938 (1070)
Q Consensus 862 ALRRaAlGIIrILie~~~~l~L~~li~~a~~~~~---~~~~~~~~~~v~~F~~~Rl~~~L~d~g~~~diV~AVL~~~~~~ 938 (1070)
||||+|+||||||++++++|||.+++++|++.++ ...+.++.++|++||.+||+++|.++|+++|+|+||++.+.+|
T Consensus 794 ALRRaAlGIirIl~e~~l~l~L~~ll~~a~~~~~~~~~~~~~~~~~~l~~Fi~~Rl~~~l~d~G~~~dvI~AVl~~~~~~ 873 (1000)
T PRK14908 794 ALRRQALGVLTLLRATPASLDLEDLLARLARHFPSTTVWVKEAVLDEVLEFVWGRLKTQLLDLGFDKDEIAAVLPDACKN 873 (1000)
T ss_pred HHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHccCCCC
Confidence 9999999999999999999999999999999874 1112356678999999999999999999999999999988889
Q ss_pred HHhHHHHHHHHHHhhcCCChhHHHHHHhhhhhhccCCCCCCccCCCcccCCCHHHHHHHHHHHHHhhhcCC-CCChHHHH
Q 001485 939 PCLATKTAYKMEALSKGQLFPKVVEAYSRPTRIVRGKDVDTALEVDETAFETIEEKALWTVYLSAKNKIHP-GINVDDFI 1017 (1070)
Q Consensus 939 ~~~~~~r~~aL~~f~~~~~f~~l~~a~KRv~NIlkk~~~~~~~~vd~~lf~~~~Ek~L~~~~~~i~~~~~~-~~~~~~~~ 1017 (1070)
|+++.+|+++|++|+++++|++++++||||.||++|.+ ...+|+++|++++|++||+++.++++.+.+ ..+|.+++
T Consensus 874 ~~~~~~r~~aL~~f~~~~~~~~l~~a~kRv~NIl~k~~---~~~vd~~Lf~~~~E~~L~~a~~~~~~~~~~~~~dy~~al 950 (1000)
T PRK14908 874 PAEADKTAQALQELKSTEIFAEIAAALNRLKRILASLS---FSVTDASLLLEPAELNLKQALDAFREELTELPIDLKDYV 950 (1000)
T ss_pred HHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHhhcC---CCccChhhcCCHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 99999999999999999999999999999999999753 136999999999999999999999766654 25788899
Q ss_pred HHHhhhchHHHhhhccceecCCcHHHHHHHHHHHHHHHHhhhhcccCCCC
Q 001485 1018 EISSELVQPLEDFFNHVFVMVEEERIRKNRLALLKKIADLPKGIVDLSLL 1067 (1070)
Q Consensus 1018 ~~l~~L~~~Id~FFD~VmVm~eD~~IR~NRLaLL~~i~~l~~~iaDfs~L 1067 (1070)
..|++|++|||+|||+||||+||++||+|||+||+.|.++|..|||||+|
T Consensus 951 ~~La~L~~~Id~FFD~VmVm~eD~~iR~NRLaLL~~i~~lf~~vaDfs~L 1000 (1000)
T PRK14908 951 AAAAELPQAVNTFFDEVLVMADDEAIRNARLGLLAAIRDLKFGVLDWDAL 1000 (1000)
T ss_pred HHHHhhhhHHHHHhCCCEeeCCCHHHHHHHHHHHHHHHHHHHhhcchhcC
Confidence 99999999999999999999999999999999999999999999999986
No 2
>PRK01233 glyS glycyl-tRNA synthetase subunit beta; Validated
Probab=100.00 E-value=1.1e-210 Score=1853.60 Aligned_cols=677 Identities=40% Similarity=0.659 Sum_probs=652.4
Q ss_pred ccchhhhhcccCCChHhHHHHHHHHHHHHHHHHHhCCCCCCcceeecccccceeeecccCccCcchhhhhcCCccccccc
Q 001485 386 PRLFVLEIGTEEMPPQDVVNASQQLKDLMLQLLNKQKLSHGEVQAFGTPRRLVVFVESLCQKQSENEFEARGPPVSKAFD 465 (1070)
Q Consensus 386 ~~~lLlEIGtEELPa~~v~~a~~ql~~~~~~~L~~~rL~~~~i~~f~TPRRLav~V~~l~~~q~d~~~e~kGP~v~~Afd 465 (1070)
+++||||||||||||+++.++.+||.+.+.+.|+++||+|+++++|+|||||+|+|+|++++|+|.++++||||+++|||
T Consensus 1 ~~~lLlEIGtEElPa~~~~~a~~~l~~~~~~~L~~~~l~~~~i~~f~TPRRLav~v~~l~~~q~d~~~e~kGP~~~~A~d 80 (682)
T PRK01233 1 MKDLLLEIGTEELPAKALRKAAEQLAERITKELKEAGLSFGSIKVFATPRRLAVLVEGLAEKQPDREEEKKGPAVKIAFD 80 (682)
T ss_pred CCcEEeehhhccCCHHHHHHHHHHHHHHHHHHHHHcCCCcCceEEEEcCcEeeeeecCCcccCCcchheecCccHHHhcC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcHHHHHHHHHCCCCccCceEEEeCCeeEEEEEEEecchhHHHHHHHHHHHHHhcCCCCcccccC-CCCcccchhh
Q 001485 466 QQGNPTKAVEGFCQRYAVPIDSLVTKAAGKTEYVYARVKETARLALEVLSEDVPSIISKLSFPKSMRWN-SQVMFSRPIR 544 (1070)
Q Consensus 466 ~~G~pTkAa~GFak~~Gv~~~~L~~~~~~kgeYv~~~~~~~G~~t~evL~eil~~iI~~L~fpKsMRWg-~~~~F~RPIr 544 (1070)
+||+||||++||||+||++++||++++++||+|+|++++++|++|.++|+++++++|++|||||+|||| ++++|+||||
T Consensus 81 ~~G~ptkA~~GFar~~gv~~~~l~~~~~~kgey~~~~~~~~g~~~~~lL~~~l~~~i~~l~fpKsMRWg~~~~~F~RPir 160 (682)
T PRK01233 81 ADGNPTKAAEGFARGQGVTVDDLERRETKKGEYLFARKVVKGRPTAELLPEILPEALAKLPFPKSMRWGNGDLRFVRPVH 160 (682)
T ss_pred cCCCcCHHHHHHHHHcCCCHHHheeeecCCccEEEEEEEECCccHHHHHHHHHHHHHHcCCCCCcceeCCCCCEEechHH
Confidence 999999999999999999999999998899999999999999999999999999999999999999999 9999999999
Q ss_pred hHHHhcCCceeeeEEcceeeCCcccccccCCCCcEEeCChhHHHHHHHhCCeeccHHHHHHHHHHHHHHHHHhcCCeecC
Q 001485 545 WIMALHGDVVVPFMFAGVLSGNLSYGLRNTPLATVKVQNAESYAGVMRNAGVKIKIEDRRKTIFDRSNALAKSVNGRIIF 624 (1070)
Q Consensus 545 wIvaL~g~~Vvp~~~~gi~Sgn~T~GHRf~~~~~i~I~~a~~Y~~~L~~~~VIvD~~eRr~~I~~qi~~lA~~~g~~v~~ 624 (1070)
|||||||++||||+++||+|||+|+||||++++.|+|++|++|.+.|++++||+|+++||++|++|++++|+++|+++..
T Consensus 161 wivaLl~~~vi~~~~~gi~s~~~t~GHRf~~~~~i~i~~~~~Y~~~L~~~~VI~d~~~R~~~I~~~i~~~a~~~g~~v~~ 240 (682)
T PRK01233 161 WIVALLGDEVVPFEILGIKSGRVTRGHRFLGPGPITIANADDYEEKLREAKVIADPEERKAIILEQIEELAAELGGQVDI 240 (682)
T ss_pred HHHHHcCCeeeEEEEeceecCCcccccccCCCCCeEeCCHHHHHHHHhhCCEECCHHHHHHHHHHHHHHHHHHcCCEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchHHHhhccccCCceeecccCccCCCCcHHHHHHHHHhCcceeEEECCCCCccccEEEEEcCC-CCchhhhchhhhHh
Q 001485 625 EESLLNEVVNLVEAPVPVLGEFEDSFLELPEDLLTVVMKKHQKYFALTDDKGRLLPYFIAVANGA-INEMVVRKGNEAVL 703 (1070)
Q Consensus 625 de~LLeEVt~LVE~P~~l~G~Fde~FL~LP~EVLitvMk~HQKYFpv~d~~G~Llp~FI~VsN~~-~~~~~V~~GNErVL 703 (1070)
|++||||||+|||||++++|+||++||+||+|||||+|++|||||||+|++|+|+|+||+|+|+. .+.++|++||||||
T Consensus 241 d~~LLeEVt~LvE~P~~l~G~Fd~~fL~LP~Evlit~M~~hQrYFpv~d~~g~L~p~Fi~V~N~~~~~~~~V~~GNErVl 320 (682)
T PRK01233 241 DEDLLEEVTGLVEWPVVLLGSFDEKFLELPEEVLITTMKEHQKYFPVYDADGKLLPNFITVSNIESKDPENIIKGNEKVL 320 (682)
T ss_pred CHHHHHHHHhccCCCeEEEEEeCHHHhCCCHHHHHHHHHHcCeeEEEECCCCCeeeeEEEEECCCCCCchhhhhcchHhH
Confidence 99999999999999999999999999999999999999999999999999999999999999996 46899999999999
Q ss_pred hhhcccchhhHHhhhcCChHHHHhcccCcccccCCCCHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHhhhhccccc
Q 001485 704 RARYEDAKFFYEMDTRKKFADFQGQLKGILFHEKLGTMLDKTMRVQNMVRKLSLDLGINEDMLQIVQEAASLAMSDLATS 783 (1070)
Q Consensus 704 rARL~DA~FF~~~DlK~~Le~~~~kLk~VvF~~kLGSl~DK~~RI~~La~~La~~l~~~~~~~~~~~RAA~L~KaDL~T~ 783 (1070)
||||+||+|||++|+|+||++|+++|++||||+|||||+||++||++|+.+||+.++++. +.+.|||.||||||+|+
T Consensus 321 rARL~DA~FF~~~D~k~~L~~~~~~L~~VvF~~~LGs~~dK~~Ri~~La~~la~~l~~~~---~~~~RAa~L~KaDL~T~ 397 (682)
T PRK01233 321 RARLADAEFFFEEDLKKPLEDRVEKLKNVVFHEKLGTLYDKVERIRALAGYIAEQLGADA---ALAERAALLAKADLVTE 397 (682)
T ss_pred HhHHhHHHHHHHHhccCCHHHHHHhcCceEeecccCCHHHHHHHHHHHHHHHHHHhCCCH---HHHHHHHHHHhhhccch
Confidence 999999999999999999999999999999999999999999999999999999999875 34799999999999999
Q ss_pred hhhcChhhhHHHHHHHHHhCCCCHHHHHHHHhhcCCCCCCCCCCCcchhhHHHHhhhHHHHHHhhhcCCCCCCCCChhhh
Q 001485 784 VVMEFTSLAGVMACHYALRDGYSQQIAEALLEINLPRFSGDVLPKTDVGTVLAVADRLDTLVGLFAAGCQPSSTNDPFGL 863 (1070)
Q Consensus 784 MV~EFPELQGiMG~~YA~~~GE~~~VA~AI~EhYlPr~agD~LP~t~~G~iLSlADKlDtLvG~F~iG~~PTGSkDPfAL 863 (1070)
||+||||||||||+|||+++||+++||+||+|||+||++||.||+|++|++||||||||||+|||++|++||||+|||||
T Consensus 398 mV~EFpELQGiMG~~YA~~~GE~~~VA~AI~EhY~P~~~~d~lP~t~~g~ilaiADKlDtL~g~F~ig~~PTGS~DPfaL 477 (682)
T PRK01233 398 MVGEFPELQGIMGRYYALHDGEDEEVALAIEEHYLPRFAGDELPSTPVGAAVALADKLDTLVGIFGIGEIPTGSKDPFAL 477 (682)
T ss_pred hhccChHhhHHHHHHHHHHCCCCHHHHHHHHHHhCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhHHHHHHHHHhCCCCCCHHHHHHHHHhhCCCCcCccchHHHHHHHHHHHHHHHhhcCCCHHHHHHhhcCCCCCHHhHH
Q 001485 864 RRISYGLVQILIEKDKNLDLELALRLAADVQPITVDASTINDVHQFVTRRLEQFLVDKGISPEIVRSVLSERANLPCLAT 943 (1070)
Q Consensus 864 RRaAlGIIrILie~~~~l~L~~li~~a~~~~~~~~~~~~~~~v~~F~~~Rl~~~L~d~g~~~diV~AVL~~~~~~~~~~~ 943 (1070)
||+|+||||||++++|++||.++++++++.+. .+..++|.+||.+||+++|.++|+++|+|+||++.+.++|+++.
T Consensus 478 RR~A~GIirIi~~~~~~l~L~~li~~a~~~~~----~~~~~~l~~F~~~Rl~~~l~~~g~~~dvi~AVl~~~~~~~~~~~ 553 (682)
T PRK01233 478 RRAALGILRIILEKGLDLDLDELIEKAVSLYN----ANVLDDVLDFFLDRLKALLQDEGIRYDVIDAVLALRPDDLADLD 553 (682)
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhh----hhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHccCCCCHHHHH
Confidence 99999999999999999999999999998652 24467899999999999999999999999999997788999999
Q ss_pred HHHHHHHHhhcCCChhHHHHHHhhhhhhccCCCCCCccCCCcccCCCHHHHHHHHHHHHHhhhcCCC---CChHHHHHHH
Q 001485 944 KTAYKMEALSKGQLFPKVVEAYSRPTRIVRGKDVDTALEVDETAFETIEEKALWTVYLSAKNKIHPG---INVDDFIEIS 1020 (1070)
Q Consensus 944 ~r~~aL~~f~~~~~f~~l~~a~KRv~NIlkk~~~~~~~~vd~~lf~~~~Ek~L~~~~~~i~~~~~~~---~~~~~~~~~l 1020 (1070)
.|+++|.+|.++++|++++++||||.||++|.+......||+++|++++|++||+++.++++.+... .+|...+..|
T Consensus 554 ~r~~aL~~~~~~~~~~~l~~~~kRv~NIl~k~~~~~~~~v~~~l~~~~~E~~L~~~~~~~~~~~~~~~~~~~y~~~l~~l 633 (682)
T PRK01233 554 ARVEALSAFRKLPEFKALAAANKRVSNILKKAEGKVSGEVDPALFEEPAEKALYAALEELKPKVEPALAAGDYQAALEAL 633 (682)
T ss_pred HHHHHHHHHhcChhHHHHHHHHHHHHHHHhccccccCCccChhHcCCHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHH
Confidence 9999999999999999999999999999997542223579999999999999999999997666543 3577778889
Q ss_pred hhhchHHHhhhccceecCCcHHHHHHHHHHHHHHHHhhhhcccCCCCCC
Q 001485 1021 SELVQPLEDFFNHVFVMVEEERIRKNRLALLKKIADLPKGIVDLSLLPG 1069 (1070)
Q Consensus 1021 ~~L~~~Id~FFD~VmVm~eD~~IR~NRLaLL~~i~~l~~~iaDfs~L~~ 1069 (1070)
+.|+++||+|||+||||+||++||+|||+||+.|.++|..|||||+|.+
T Consensus 634 ~~L~~~Id~FFD~VmVm~~d~~iR~NRL~LL~~i~~~f~~iaDfs~l~~ 682 (682)
T PRK01233 634 AALRPPVDAFFDNVMVMAEDEALRANRLALLASLRELFLRVADFSKLAG 682 (682)
T ss_pred HhhhhHHHHHhCCCeeeCCCHHHHHHHHHHHHHHHHHHHHhcCHHHhcC
Confidence 9999999999999999999999999999999999999999999999864
No 3
>TIGR00211 glyS glycyl-tRNA synthetase, tetrameric type, beta subunit. The glycyl-tRNA synthetases differ even among the eubacteria in oligomeric structure. In Escherichia coli and most others, it is a heterodimer of two alpha chains and two beta chains, encoded by tandem genes. The genes are similar, but fused, in Chlamydia trachomatis. By contrast, the glycyl-tRNA synthetases of Thermus thermophilus and of archaea and eukaryotes differ considerably; they are homodimeric, mutually similar, and not detected by this model.
Probab=100.00 E-value=2.3e-210 Score=1853.10 Aligned_cols=683 Identities=35% Similarity=0.584 Sum_probs=652.7
Q ss_pred ccchhhhhcccCCChHhHHHHHHHHHHHHHHHHHhCCCCCCcceeecccccceeeecccCccCcchhhhhcCCccccccc
Q 001485 386 PRLFVLEIGTEEMPPQDVVNASQQLKDLMLQLLNKQKLSHGEVQAFGTPRRLVVFVESLCQKQSENEFEARGPPVSKAFD 465 (1070)
Q Consensus 386 ~~~lLlEIGtEELPa~~v~~a~~ql~~~~~~~L~~~rL~~~~i~~f~TPRRLav~V~~l~~~q~d~~~e~kGP~v~~Afd 465 (1070)
+++||||||||||||+++.++.+||.+.+.+.|+++||+|+++++|+|||||+|+|+|++++|+|.++++||||+++|||
T Consensus 3 ~~~lLlEIGtEElPa~~~~~~~~~l~~~~~~~L~~~~i~~~~i~~f~TPRRLal~i~~l~~~q~d~~~e~kGP~~~~A~d 82 (691)
T TIGR00211 3 SQTFLVEIGTEELPAKALRSLATQFADKLTAELNKAGLEHGNVEIFATPRRLAVLVKDLAELQPDRKEEKKGPAVKIAFD 82 (691)
T ss_pred ccceeeehhhccCCHHHHHHHHHHHHHHHHHHHHHcCCCcCceEEEEcCcEeEEEecCccccCCCceeeeeCCcHHHhcc
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcHHHHHHHHHCCCCccCceEEEeCCeeEEEEEEEecchhHHHHHHHHHHHHHhcCCCCcccccC-CCCcccchhh
Q 001485 466 QQGNPTKAVEGFCQRYAVPIDSLVTKAAGKTEYVYARVKETARLALEVLSEDVPSIISKLSFPKSMRWN-SQVMFSRPIR 544 (1070)
Q Consensus 466 ~~G~pTkAa~GFak~~Gv~~~~L~~~~~~kgeYv~~~~~~~G~~t~evL~eil~~iI~~L~fpKsMRWg-~~~~F~RPIr 544 (1070)
++|+||||++|||||||++++||++++++||+|+|++++++|++|.++|+++++++|++|||||+|||| ++++|+||||
T Consensus 83 ~~G~pTkAa~GFak~~Gv~~~~l~~~~~~kgey~~~~k~~~g~~t~elL~~il~~~i~~l~fpK~MrWg~~~~~F~RPir 162 (691)
T TIGR00211 83 ADGKPTKAALGFAKGQGINVEDAEIFQTDKGEWLFVRKIHEGQPTKDLLPPLVLEFLAKLPFPKSMRWGNVDVRFIRPIH 162 (691)
T ss_pred cCCCcCHHHHHHHHHcCCCHHHheeeecCCccEEEEEEEECCccHHHHHHHHHHHHHHcCCCCCcceECCCCCEEechHH
Confidence 999999999999999999999999975778899999999999999999999999999999999999999 9999999999
Q ss_pred hHHHhcCCceeeeEEcceeeCCcccccccCCCCcEEeCChhHHHHHHHhCCeeccHHHHHHHHHHHHHHHHHhcCCeecC
Q 001485 545 WIMALHGDVVVPFMFAGVLSGNLSYGLRNTPLATVKVQNAESYAGVMRNAGVKIKIEDRRKTIFDRSNALAKSVNGRIIF 624 (1070)
Q Consensus 545 wIvaL~g~~Vvp~~~~gi~Sgn~T~GHRf~~~~~i~I~~a~~Y~~~L~~~~VIvD~~eRr~~I~~qi~~lA~~~g~~v~~ 624 (1070)
|||||||++||||+++||+|||+|+||||++++.|+|++|++|.+.|++++||+|+++||++|++|++++|+++|+++.+
T Consensus 163 wivaLl~~~vip~~~~gi~s~~~t~GHRf~~~~~i~i~~a~~Y~~~L~~~~Vi~d~~eRk~~I~~qi~~~a~~~g~~v~~ 242 (691)
T TIGR00211 163 WIVVLLGDDVIPIEILNVKSDRTTRGHRFLGEDEVSIESPDAYPEQLKENHVIADPKERKAMILQQIETLAAKLGGIADI 242 (691)
T ss_pred HHHHHcCCceeeEEEeceeecccccccccCCCCCeEeCCHHHHHHHHhhCCEECCHHHHHHHHHHHHHHHHHHcCCeecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchHHHhhccccCCceeecccCccCCCCcHHHHHHHHHhCcceeEEECCCCCccccEEEEEcCC-CCchhhhchhhhHh
Q 001485 625 EESLLNEVVNLVEAPVPVLGEFEDSFLELPEDLLTVVMKKHQKYFALTDDKGRLLPYFIAVANGA-INEMVVRKGNEAVL 703 (1070)
Q Consensus 625 de~LLeEVt~LVE~P~~l~G~Fde~FL~LP~EVLitvMk~HQKYFpv~d~~G~Llp~FI~VsN~~-~~~~~V~~GNErVL 703 (1070)
|++||||||+|||||++++|+||++||+||+|||||+|++|||||||+|++|+|+|+||+|+|+. .+.++|++||||||
T Consensus 243 d~~LLeEVt~LVE~P~~l~G~Fd~~fL~lP~Evlit~M~~hQrYFpv~d~~g~L~p~Fi~V~N~~~~~~~~V~~GNEkVl 322 (691)
T TIGR00211 243 DEDLLDEVVSLVEYPTALLGKFEEEFLSLPAEVLVTTMKEHQRYFPVYDKDGKLLPHFITVSNGNSKDPQKIILGNEKVL 322 (691)
T ss_pred CHHHHHHHHhccCCCeEEEEeeCHHHhCCCHHHHHHHHHHcCeeEEEECCCCCeeeeEEEEECCCCCChhhhhhchHHhH
Confidence 99999999999999999999999999999999999999999999999999999999999999996 47899999999999
Q ss_pred hhhcccchhhHHhhhcCChHHHHhcccCcccccCCCCHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHhhhhccccc
Q 001485 704 RARYEDAKFFYEMDTRKKFADFQGQLKGILFHEKLGTMLDKTMRVQNMVRKLSLDLGINEDMLQIVQEAASLAMSDLATS 783 (1070)
Q Consensus 704 rARL~DA~FF~~~DlK~~Le~~~~kLk~VvF~~kLGSl~DK~~RI~~La~~La~~l~~~~~~~~~~~RAA~L~KaDL~T~ 783 (1070)
||||+||+|||++|+|+||++|+++|++|+||+|||||+|||+||++|+.+||+.++++.+..+...|||.||||||+|+
T Consensus 323 rARL~DA~FF~~~D~k~~L~~~~~kL~~VvF~~kLGsl~dK~~Ri~~La~~ia~~l~~~~~~~~~~~rAa~L~KaDL~T~ 402 (691)
T TIGR00211 323 RARLSDAEFFYKTDLKKPLDDNLPRLETVVFQQELGTLKDKVDRISIIAGYIAQQLGADENMLEHVKRAALLSKADLVTN 402 (691)
T ss_pred HhHHhHHHHHHHHhccCCHHHHHHHhCceEeecccCCHHHHHHHHHHHHHHHHHHhCCChhhhHHHHHHHHHHhhhccch
Confidence 99999999999999999999999999999999999999999999999999999999886543223589999999999999
Q ss_pred hhhcChhhhHHHHHHHHHhCCCCHHHHHHHHhhcCCCCCCCCCCCcchhhHHHHhhhHHHHHHhhhcCCCCCCCCChhhh
Q 001485 784 VVMEFTSLAGVMACHYALRDGYSQQIAEALLEINLPRFSGDVLPKTDVGTVLAVADRLDTLVGLFAAGCQPSSTNDPFGL 863 (1070)
Q Consensus 784 MV~EFPELQGiMG~~YA~~~GE~~~VA~AI~EhYlPr~agD~LP~t~~G~iLSlADKlDtLvG~F~iG~~PTGSkDPfAL 863 (1070)
||+||||||||||+|||+++||+++||.||+|||+||++||.||+|++|++||||||||||+|||++|++||||+|||||
T Consensus 403 mV~EFpELQGiMG~~YA~~~GE~~~VA~AI~EhY~Pr~~~d~lP~t~~g~ivsiADKlDtL~g~F~iG~~PTGS~DPfaL 482 (691)
T TIGR00211 403 MVYEFPELQGIMGEKYARHDGEDEAVAVAVNEQYLPRSAGDDLPSSLVGSVVAMADKLDTLASIFGIGQIPTGSKDPFAL 482 (691)
T ss_pred hhccChHhhHHHHHHHHHHCCCCHHHHHHHHHHhCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhHHHHHHHHHhCCCCCCHHHHHHHHHhhCCCCc-CccchHHHHHHHHHHHHHHHhhcCCCHHHHHHhhcCCCCCHHhH
Q 001485 864 RRISYGLVQILIEKDKNLDLELALRLAADVQPITV-DASTINDVHQFVTRRLEQFLVDKGISPEIVRSVLSERANLPCLA 942 (1070)
Q Consensus 864 RRaAlGIIrILie~~~~l~L~~li~~a~~~~~~~~-~~~~~~~v~~F~~~Rl~~~L~d~g~~~diV~AVL~~~~~~~~~~ 942 (1070)
||+|+||||||++++|++||.+++++|++.++... +.++.++|++||.+||+++|.++|+++|+|+||++.+.+||+++
T Consensus 483 RR~A~GIirIi~~~~~~l~L~~li~~a~~~~~~~~~~~~~~~~l~~F~~~Rl~~~l~~~g~~~dvi~AVl~~~~~~~~~~ 562 (691)
T TIGR00211 483 RRAALGVLRIIVEKNLEIDLEELLTNFVLLQGDKLTNSNVLEDLEDFFLQRFRALLQDEGIDVDVIQAVLARRETDPADF 562 (691)
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHccCCCCHHHH
Confidence 99999999999999999999999999999874311 22456689999999999999999999999999999888899999
Q ss_pred HHHHHHHHHhhcCCChhHHHHHHhhhhhhccCCCCCCccCCCcccCCCHHHHHHHHHHHHHhhhcCC---CCChHHHHHH
Q 001485 943 TKTAYKMEALSKGQLFPKVVEAYSRPTRIVRGKDVDTALEVDETAFETIEEKALWTVYLSAKNKIHP---GINVDDFIEI 1019 (1070)
Q Consensus 943 ~~r~~aL~~f~~~~~f~~l~~a~KRv~NIlkk~~~~~~~~vd~~lf~~~~Ek~L~~~~~~i~~~~~~---~~~~~~~~~~ 1019 (1070)
.+|+++|++|++.++|++++++||||.||++|.+......||++||++++|++||+++..++..+.. ..+|...+..
T Consensus 563 ~~r~~aL~~~~~~~~~~~l~~a~kRv~NIl~k~~~~~~~~v~~~l~~~~~E~~L~~~~~~~~~~~~~~~~~~~y~~~l~~ 642 (691)
T TIGR00211 563 DARAQALSHFRDLPKAEALAAANKRVANILKKGNPVLSSEIQANLFKEPKEKALFEAVLAIKMNAQESFESGDYETALEA 642 (691)
T ss_pred HHHHHHHHHHHcChhHHHHHHHHHHHHHHHhcccccccCccChhHcCCHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHH
Confidence 9999999999999999999999999999999754221236999999999999999999999665543 2368888888
Q ss_pred HhhhchHHHhhhccceecCCcHHHHHHHHHHHHHHHHhhhhcccCCCCC
Q 001485 1020 SSELVQPLEDFFNHVFVMVEEERIRKNRLALLKKIADLPKGIVDLSLLP 1068 (1070)
Q Consensus 1020 l~~L~~~Id~FFD~VmVm~eD~~IR~NRLaLL~~i~~l~~~iaDfs~L~ 1068 (1070)
|+.|+++||+|||+||||+||++||+|||+||+.|.++|..|||||+|+
T Consensus 643 l~~L~~~Id~FFD~VmVm~~d~~iR~NRL~LL~~i~~lf~~iaDfs~l~ 691 (691)
T TIGR00211 643 LAELRAPVDEFFDSVMVMADDIELRQNRLNFLWGLRQLFLEVADISALQ 691 (691)
T ss_pred HHHhhhHHHHHhCCCEeeCCCHHHHHHHHHHHHHHHHHHHHhccHHHcC
Confidence 9999999999999999999999999999999999999999999999985
No 4
>COG0751 GlyS Glycyl-tRNA synthetase, beta subunit [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.6e-211 Score=1822.08 Aligned_cols=682 Identities=39% Similarity=0.620 Sum_probs=656.0
Q ss_pred CccchhhhhcccCCChHhHHHHHHHHHHHHHHHHHhCCCCCCcceeecccccceeeecccCccCcchhhhhcCCcccccc
Q 001485 385 DPRLFVLEIGTEEMPPQDVVNASQQLKDLMLQLLNKQKLSHGEVQAFGTPRRLVVFVESLCQKQSENEFEARGPPVSKAF 464 (1070)
Q Consensus 385 ~~~~lLlEIGtEELPa~~v~~a~~ql~~~~~~~L~~~rL~~~~i~~f~TPRRLav~V~~l~~~q~d~~~e~kGP~v~~Af 464 (1070)
|+.+||+|||||||||+++.++.+||.+.+.+.|+++||+|+++++|+|||||||.|+||+..|+|.++|+||||+++||
T Consensus 2 ~~~~lLlEigtEELPA~~l~~~~~~l~~~~~~~L~~~~l~~~~v~~f~tPRRLal~v~~la~~q~d~~eE~kGP~~~~a~ 81 (691)
T COG0751 2 SMKDLLLEIGTEELPAKALRSAAEQLAKKFTAGLKEAGLSFEGVEVFATPRRLALLVKGLAEAQPDREEEKKGPPVKAAF 81 (691)
T ss_pred chhhHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHcCCcccccEEecCCceeeeeecCccccccchhhhhcCCcccccc
Confidence 46699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCcHHHHHHHHHCCCCccCceEEEeCC-e-eEEEEEEEecchhHHHHHHHHHHHHHhcCCCCcccccC-CCCcccc
Q 001485 465 DQQGNPTKAVEGFCQRYAVPIDSLVTKAAGK-T-EYVYARVKETARLALEVLSEDVPSIISKLSFPKSMRWN-SQVMFSR 541 (1070)
Q Consensus 465 d~~G~pTkAa~GFak~~Gv~~~~L~~~~~~k-g-eYv~~~~~~~G~~t~evL~eil~~iI~~L~fpKsMRWg-~~~~F~R 541 (1070)
|++|+||||++||+|+||++++++.+..++| | +|+|..++.+|++|.++|+++++++|++|||||+|||| ++++|+|
T Consensus 82 d~~g~~TkA~eGF~r~~Gvs~e~~~~~~~~k~G~~y~~~~~~~~g~~t~~iL~~i~~~~i~~l~~pK~MrWg~~~~~fiR 161 (691)
T COG0751 82 DADGKPTKAAEGFARGQGVSVEDLERRKDDKKGEEYVYRVKKEEGQPTEELLPEIVPEAIASLPFPKSMRWGSKDVRFIR 161 (691)
T ss_pred ccCCCcCHHHHHHHHHCCCCHHHhhhhccCCCCcEEEEEEeccCCCcHHHHHHHHHHHHHHcCCCCCceeeCCCCeEEec
Confidence 9999999999999999999999999988866 6 89999999999999999999999999999999999999 9999999
Q ss_pred hhhhHHHhcCCceeeeEEcceeeCCcccccccCCCCcEEeCChhHHHHHHHhCCeeccHHHHHHHHHHHHHHHHHhcCCe
Q 001485 542 PIRWIMALHGDVVVPFMFAGVLSGNLSYGLRNTPLATVKVQNAESYAGVMRNAGVKIKIEDRRKTIFDRSNALAKSVNGR 621 (1070)
Q Consensus 542 PIrwIvaL~g~~Vvp~~~~gi~Sgn~T~GHRf~~~~~i~I~~a~~Y~~~L~~~~VIvD~~eRr~~I~~qi~~lA~~~g~~ 621 (1070)
|||||+||||++|||+++.||+|||+|+||||+++..|+|+++++|.++|++++||+|+++||++|++|++++|.++|+.
T Consensus 162 Pi~~iv~L~g~evip~~i~gi~s~~~s~GHRfl~~~~i~I~~~~~Y~~~L~~~~VI~d~~eRk~~I~~~i~~~a~~~~~~ 241 (691)
T COG0751 162 PIHWIVALLGDEVIPFEILGIKSGRITRGHRFLGPGEITIDSADDYVEKLREGKVIADPEERKAIILEQIEELASKLGGV 241 (691)
T ss_pred chhhhhhhhCCeeeeeeeeeeeecccccceeccCCCceeeCCHHHHHHHHHhCCEeCCHHHHHHHHHHHHHHHHHHcCCe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCchHHHhhccccCCceeecccCccCCCCcHHHHHHHHHhCcceeEEECCCCCccccEEEEEcCCC-Cchhhhchhh
Q 001485 622 IIFEESLLNEVVNLVEAPVPVLGEFEDSFLELPEDLLTVVMKKHQKYFALTDDKGRLLPYFIAVANGAI-NEMVVRKGNE 700 (1070)
Q Consensus 622 v~~de~LLeEVt~LVE~P~~l~G~Fde~FL~LP~EVLitvMk~HQKYFpv~d~~G~Llp~FI~VsN~~~-~~~~V~~GNE 700 (1070)
+..|++||||||+|||||++++|+||++||+||+|||||+|++|||||||+|++|+|+|+||+|||+.+ +.++|++|||
T Consensus 242 ~~~de~LLeEV~~LvE~P~vl~g~Fee~FL~lP~EvlittMk~hQkYFpv~~~~g~L~p~FI~VsN~~~~d~~~Ii~GNE 321 (691)
T COG0751 242 ADIDEDLLEEVTALVEYPTVLLGKFEEKFLELPEEVLITTMKEHQKYFPVFDQGGKLLPHFIFVSNGEPKDPENIIEGNE 321 (691)
T ss_pred ecCChHHHHHHHhcccCChheeecccHHHHcCCHHHHHHHHHhcceeeEEECCCCCcccceEEEECCCCCChhHhhcccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999975 6799999999
Q ss_pred hHhhhhcccchhhHHhhhcCChHHHHhcccCcccccCCCCHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHhhhhcc
Q 001485 701 AVLRARYEDAKFFYEMDTRKKFADFQGQLKGILFHEKLGTMLDKTMRVQNMVRKLSLDLGINEDMLQIVQEAASLAMSDL 780 (1070)
Q Consensus 701 rVLrARL~DA~FF~~~DlK~~Le~~~~kLk~VvF~~kLGSl~DK~~RI~~La~~La~~l~~~~~~~~~~~RAA~L~KaDL 780 (1070)
|||||||+||+|||++|+|+||++++++|++||||+||||++|||+||+.||.+||+++|.+. +++.|||.||||||
T Consensus 322 KVlraRLsDA~FF~k~Dlk~~L~~~~~kL~~VtFh~kLGTl~dKv~Ri~~iA~~ia~~l~~d~---~~~~rAa~l~KaDL 398 (691)
T COG0751 322 KVLRARLSDAEFFFKEDLKKPLESRLPKLKTVTFHEKLGTLADKVERIKKIAAYIAPQLGADV---EDADRAALLAKADL 398 (691)
T ss_pred eeeeeccchHHHHHhhhhcccHHHHHHhhceeeehHhcccHHHHHHHHHHHHHHHHHHhCccH---HHHHHHHHHHhhhh
Confidence 999999999999999999999999999999999999999999999999999999999999854 78999999999999
Q ss_pred ccchhhcChhhhHHHHHHHHHhCCCCHHHHHHHHhhcCCCCCCCCCCCcchhhHHHHhhhHHHHHHhhhcCCCCCCCCCh
Q 001485 781 ATSVVMEFTSLAGVMACHYALRDGYSQQIAEALLEINLPRFSGDVLPKTDVGTVLAVADRLDTLVGLFAAGCQPSSTNDP 860 (1070)
Q Consensus 781 ~T~MV~EFPELQGiMG~~YA~~~GE~~~VA~AI~EhYlPr~agD~LP~t~~G~iLSlADKlDtLvG~F~iG~~PTGSkDP 860 (1070)
+|+||+||||||||||+|||+++||+++||.||.|||+|||+||.||+|++|++||||||||||+|||+||++||||+||
T Consensus 399 ~T~mV~EFpELQGiMG~~YA~~~Ge~~~VA~Ai~EhY~Pr~~gd~lP~t~~g~~valADKLDTLvg~F~iG~iPtGSkDP 478 (691)
T COG0751 399 VTEMVGEFPELQGIMGEYYALHDGEDEEVALAIEEHYLPRFAGDELPSTPVGAVVALADKLDTLVGFFGIGLIPTGSKDP 478 (691)
T ss_pred hHhhhcCChhhhHHHHHHHHHHcCCCHHHHHHHHHhcCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHhccCCcCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHhHHHHHHHHHhCCCCCCHHHHHHHHHhhCCCC-cCccchHHHHHHHHHHHHHHHhhcCCCHHHHHHhhcCCCCCH
Q 001485 861 FGLRRISYGLVQILIEKDKNLDLELALRLAADVQPIT-VDASTINDVHQFVTRRLEQFLVDKGISPEIVRSVLSERANLP 939 (1070)
Q Consensus 861 fALRRaAlGIIrILie~~~~l~L~~li~~a~~~~~~~-~~~~~~~~v~~F~~~Rl~~~L~d~g~~~diV~AVL~~~~~~~ 939 (1070)
|||||+|+||||||++++|+|||.++++.+...+... ....+.++|++||.+||+++|.++|+++|+|+|||+.+..+|
T Consensus 479 yALRRaAlGiirIi~~~~l~l~l~~ll~~~~~~~~~~~~~~~~~~~l~~F~~~Rl~~~l~d~g~~~dii~AVL~~~~~~l 558 (691)
T COG0751 479 YALRRAALGILRIILEKNLDLDLEELLDKAVASFKSKLTNAKVLEELLDFFLGRLRTYLQDEGYRKDIIDAVLALNPTDL 558 (691)
T ss_pred HHHHHHHhHHHHHHHHhCCCCCHHHHHHHHHHHhhhhccccchHHHHHHHHHHHHHHHHHccCCCHHHHHHHHcCCCCCH
Confidence 9999999999999999999999999999998655321 234678899999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHhhcCCChhHHHHHHhhhhhhccCCCCCCccCCCcccCCCHHHHHHHHHHHHHhhhcCCC---CChHHH
Q 001485 940 CLATKTAYKMEALSKGQLFPKVVEAYSRPTRIVRGKDVDTALEVDETAFETIEEKALWTVYLSAKNKIHPG---INVDDF 1016 (1070)
Q Consensus 940 ~~~~~r~~aL~~f~~~~~f~~l~~a~KRv~NIlkk~~~~~~~~vd~~lf~~~~Ek~L~~~~~~i~~~~~~~---~~~~~~ 1016 (1070)
+++.+|+++|..|++.++++++++++||++||++|.+......||++||++++|++||+++..+....... .+|.++
T Consensus 559 ~~i~~r~~al~~f~~~~~~~~l~~a~kRv~nIl~k~~~~~~~~v~~~Lf~~~~E~~L~~a~~~~~~~~~~a~a~~~y~~a 638 (691)
T COG0751 559 LDIIARAEALQEFLDLPEAKALAAANKRVSNILAKAEKKLSGTVDPSLFEEDAEKALFEALQALKPKVAEALAEKDYQDA 638 (691)
T ss_pred HHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHhcccccCCccChHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 99999999999999999999999999999999997653344679999999999999999999998665443 468888
Q ss_pred HHHHhhhchHHHhhhccceecCCcHHHHHHHHHHHHHHHHhhhhcccCCCCCC
Q 001485 1017 IEISSELVQPLEDFFNHVFVMVEEERIRKNRLALLKKIADLPKGIVDLSLLPG 1069 (1070)
Q Consensus 1017 ~~~l~~L~~~Id~FFD~VmVm~eD~~IR~NRLaLL~~i~~l~~~iaDfs~L~~ 1069 (1070)
+..|++|++|||.|||+||||+||++||+|||+||..++++|..|||||.|.+
T Consensus 639 l~~L~~L~~pId~FFd~VmVm~eD~~iR~NRLalL~~l~~~f~~vAd~~~l~~ 691 (691)
T COG0751 639 LAALAELRPPIDEFFDNVMVMAEDEALRNNRLALLSKLRELFLKVADFSLLVK 691 (691)
T ss_pred HHHHHHhhhhHHHHhcCceeeCCCHHHHHHHHHHHHHHHHHHHHHhhHHHhcC
Confidence 99999999999999999999999999999999999999999999999998853
No 5
>PF02092 tRNA_synt_2f: Glycyl-tRNA synthetase beta subunit; InterPro: IPR015944 The aminoacyl-tRNA synthetases (6.1.1 from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold and are mostly monomeric, while class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet formation, flanked by alpha-helices [], and are mostly dimeric or multimeric. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic aci, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. The 10 class I synthetases are considered to have in common the catalytic domain structure based on the Rossmann fold, which is totally different from the class II catalytic domain structure. The class I synthetases are further divided into three subclasses, a, b and c, according to sequence homology. No conserved structural features for tRNA recognition by class I synthetases have been established. Class-II tRNA synthetases do not share a high degree of similarity, however at least three conserved regions are present [, , ]. In most eubacteria, glycyl-tRNA synthetase (6.1.1.14 from EC) is an alpha2/beta2 tetramer composed of 2 different subunits [, , ] while in archaea, eukaryota and some eubacteria, glycyl-tRNA synthetase is an alpha2 dimer (see IPR002315 from INTERPRO). This entry represents the beta subunit of the tetrameric enzyme. What is most interesting is the lack of similarity between the two types: divergence at the sequence level is so great that it is impossible to infer descent from common genes. The alpha (see IPR002310 from INTERPRO) and beta subunits also lack significant sequence similarity. However, they are translated from a single mRNA [], and a single chain glycyl-tRNA synthetase from Chlamydia trachomatis has been found to have significant similarity with both domains, suggesting divergence from a single polypeptide chain []. This entry represents the beta subunit of glycyl-tRNA synthetase.; GO: 0000166 nucleotide binding, 0004820 glycine-tRNA ligase activity, 0005524 ATP binding, 0006426 glycyl-tRNA aminoacylation, 0005737 cytoplasm
Probab=100.00 E-value=3.9e-182 Score=1576.49 Aligned_cols=543 Identities=45% Similarity=0.757 Sum_probs=532.2
Q ss_pred hhhhhcccCCChHhHHHHHHHHHHHHHHHHHhCCCCCCcceeecccccceeeecccCccCcchhhhhcCCccccccccCC
Q 001485 389 FVLEIGTEEMPPQDVVNASQQLKDLMLQLLNKQKLSHGEVQAFGTPRRLVVFVESLCQKQSENEFEARGPPVSKAFDQQG 468 (1070)
Q Consensus 389 lLlEIGtEELPa~~v~~a~~ql~~~~~~~L~~~rL~~~~i~~f~TPRRLav~V~~l~~~q~d~~~e~kGP~v~~Afd~~G 468 (1070)
||||||||||||++++++.++|++.+.+.|++++|+|++|++|+|||||+|+|++|+++|+|.+++++|||+++|||++|
T Consensus 1 lLlEIgtEElPa~~l~~~~~~~~~~~~~~l~~~~l~~~~i~~f~TPRRlav~i~~l~~~q~d~~~~~~GP~~~~a~d~~G 80 (548)
T PF02092_consen 1 LLLEIGTEELPARFLKKALEQLKELIEKELKDNRLSFGSIKVFGTPRRLAVLIEGLAEKQPDREEEVKGPPVKIAFDADG 80 (548)
T ss_pred CeEEeccccCCHHHHHHHHHHHHHHHHHHHHHCCCCcCceEEeeccceeeeeecCccccCccchheeeCCcHHHhcCcCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHCCCCccCceEEEeCCeeEEEEEEEecchhHHHHHHHHHHHHHhcCCCCcccccC-CCCcccchhhhHH
Q 001485 469 NPTKAVEGFCQRYAVPIDSLVTKAAGKTEYVYARVKETARLALEVLSEDVPSIISKLSFPKSMRWN-SQVMFSRPIRWIM 547 (1070)
Q Consensus 469 ~pTkAa~GFak~~Gv~~~~L~~~~~~kgeYv~~~~~~~G~~t~evL~eil~~iI~~L~fpKsMRWg-~~~~F~RPIrwIv 547 (1070)
+||||++||||++|+++++|.+++++||+|+|+++..+|++|.++|+++++++|++|||||+|||| ++++|+||||||+
T Consensus 81 ~pt~A~~gFak~~gv~~~~l~~~~~~kg~y~~~~~~~~g~~~~~iL~~il~~~i~~l~~pK~MrWg~~~~~F~RPirwi~ 160 (548)
T PF02092_consen 81 NPTKAAEGFAKSQGVSVEDLEIKETNKGEYLFARKKIKGRPTKEILPEILPQIIKSLPFPKSMRWGDGDFRFIRPIRWIV 160 (548)
T ss_pred CccHHHHHHHHHcCCCHHHhEEEEeCCEeEEEEEEEECCccHHHHHHHHHHHHHHcCCCCCccccCCCCCEEechHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred HhcCCceeeeEEcceeeCCcccccccCCCCcEEeCChhHHHHHHHhCCeeccHHHHHHHHHHHHHHHHHhcCCeecCCCc
Q 001485 548 ALHGDVVVPFMFAGVLSGNLSYGLRNTPLATVKVQNAESYAGVMRNAGVKIKIEDRRKTIFDRSNALAKSVNGRIIFEES 627 (1070)
Q Consensus 548 aL~g~~Vvp~~~~gi~Sgn~T~GHRf~~~~~i~I~~a~~Y~~~L~~~~VIvD~~eRr~~I~~qi~~lA~~~g~~v~~de~ 627 (1070)
||||++||||+++||+|||+|+||||+++++|+|++|++|.+.|++++||+|+++||++|++|++++|+++|+++..|++
T Consensus 161 aL~~~~vi~~~~~gi~s~~~t~GhRf~~~~~i~i~~a~~Y~~~L~~~~VIvd~~~Rk~~I~~~i~~~a~~~~~~~~~d~~ 240 (548)
T PF02092_consen 161 ALLGDEVIPFEIFGIKSGNTTRGHRFLSPEPIEINSADDYEEVLKKNFVIVDPEERKEIIREQINKLAKELGGKVIIDED 240 (548)
T ss_pred HHcCCceeEEEEccEeeCceeeccccCCCCCeEeCCHHHHHHHHhhCCEECCHHHHHHHHHHHHHHHHHHcCCEecCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhccccCCceeecccCccCCCCcHHHHHHHHHhCcceeEEECCCCCccccEEEEEcCCC-CchhhhchhhhHhhhh
Q 001485 628 LLNEVVNLVEAPVPVLGEFEDSFLELPEDLLTVVMKKHQKYFALTDDKGRLLPYFIAVANGAI-NEMVVRKGNEAVLRAR 706 (1070)
Q Consensus 628 LLeEVt~LVE~P~~l~G~Fde~FL~LP~EVLitvMk~HQKYFpv~d~~G~Llp~FI~VsN~~~-~~~~V~~GNErVLrAR 706 (1070)
||||||+|||||++++|+||++||+||+|||+|+|++|||||||+|++|+|+|+||+|+|+.+ +.++|++|||||||||
T Consensus 241 LLdEVt~LvE~P~~l~G~Fd~~fL~lP~evlit~M~~hQkyFpv~d~~g~L~p~Fi~VsN~~~~~~~~V~~GnEkVl~AR 320 (548)
T PF02092_consen 241 LLDEVTNLVEWPVALLGSFDEKFLELPKEVLITSMKEHQKYFPVYDKDGKLLPYFIFVSNIESKDPENVIKGNEKVLRAR 320 (548)
T ss_pred HHHHHHHhccCCeEEEEecCHHhhhCCHHHHHHHHHhcceEEEEECCCCCccceEEEEECCCCCCHHHhHhhHHHHHHhH
Confidence 999999999999999999999999999999999999999999999999999999999999975 5699999999999999
Q ss_pred cccchhhHHhhhcCChHHHHhcccCcccccCCCCHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHhhhhccccchhh
Q 001485 707 YEDAKFFYEMDTRKKFADFQGQLKGILFHEKLGTMLDKTMRVQNMVRKLSLDLGINEDMLQIVQEAASLAMSDLATSVVM 786 (1070)
Q Consensus 707 L~DA~FF~~~DlK~~Le~~~~kLk~VvF~~kLGSl~DK~~RI~~La~~La~~l~~~~~~~~~~~RAA~L~KaDL~T~MV~ 786 (1070)
|+||+|||++|+|+||++|+++|++|+||+|||||+|||+||+.|+.+||++++ ..+.+.+.|||.||||||+|+||+
T Consensus 321 L~DA~FF~~~D~k~~L~~~~~~L~~vvF~~kLGtl~dK~~Ri~~la~~ia~~l~--~~~~~~~~rAa~L~KaDL~T~mV~ 398 (548)
T PF02092_consen 321 LADAEFFYKEDLKKPLEDRVEKLKNVVFHEKLGTLYDKTERIRKLARYIAEQLG--EEDKEDAERAALLCKADLVTNMVG 398 (548)
T ss_pred HhHHHHHHHhhcCCCHHHHHHhcCCeEeecccCCHHHHHHHHHHHHHHHHHHhc--hhhHHHHHHHHHHHHHhhhhcccc
Confidence 999999999999999999999999999999999999999999999999999997 345678999999999999999999
Q ss_pred cChhhhHHHHHHHHHhCCCCHHHHHHHHhhcCCCCCCCCCCCcchhhHHHHhhhHHHHHHhhhcCCCCCCCCChhhhhHh
Q 001485 787 EFTSLAGVMACHYALRDGYSQQIAEALLEINLPRFSGDVLPKTDVGTVLAVADRLDTLVGLFAAGCQPSSTNDPFGLRRI 866 (1070)
Q Consensus 787 EFPELQGiMG~~YA~~~GE~~~VA~AI~EhYlPr~agD~LP~t~~G~iLSlADKlDtLvG~F~iG~~PTGSkDPfALRRa 866 (1070)
||||||||||+|||+++||+++||.||+|||+|+++||.||+|++|++||||||||||+|||++|++||||+|||||||+
T Consensus 399 EFPELQGiMG~~YA~~~GE~~~VA~AI~EhY~P~~~~d~lP~t~~g~ilsiADKlDtl~g~F~ig~~PtGskDPfaLRRa 478 (548)
T PF02092_consen 399 EFPELQGIMGRYYALADGESEEVALAIEEHYLPRFAGDELPSTPIGAILSIADKLDTLVGFFGIGEIPTGSKDPFALRRA 478 (548)
T ss_pred cChHHHHHHHHHHHHHCCCchHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCcHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHhhCCCC--cCccchHHHHHHHHHHHHHHHhhcCCCHHHHHHhhc
Q 001485 867 SYGLVQILIEKDKNLDLELALRLAADVQPIT--VDASTINDVHQFVTRRLEQFLVDKGISPEIVRSVLS 933 (1070)
Q Consensus 867 AlGIIrILie~~~~l~L~~li~~a~~~~~~~--~~~~~~~~v~~F~~~Rl~~~L~d~g~~~diV~AVL~ 933 (1070)
|+||||||++++|+|||.+++++|++.++.. ..+++.++|.+||.+||+++|.++||++|+|+|||+
T Consensus 479 a~GIirIi~e~~~~l~L~~li~~a~~~~~~~~~~~~~~~~~v~~F~~~Rl~~~l~~~g~~~d~i~aVl~ 547 (548)
T PF02092_consen 479 ALGIIRIIIEKKLDLDLKELIEKALELYPKQGKDKEEILEEVLEFFLERLKNYLKEEGYRYDVIEAVLA 547 (548)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhccChHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHhhc
Confidence 9999999999999999999999999987532 355788999999999999999999999999999996
No 6
>TIGR00388 glyQ glycyl-tRNA synthetase, tetrameric type, alpha subunit. This tetrameric form of glycyl-tRNA synthetase (2 alpha, 2 beta) is found in the majority of completed eubacterial genomes, with the two genes fused in a few species. A substantially different homodimeric form (not recognized by this model) replaces this form in the Archaea, animals, yeasts, and some eubacteria.
Probab=100.00 E-value=8.3e-163 Score=1275.32 Aligned_cols=288 Identities=59% Similarity=1.054 Sum_probs=286.1
Q ss_pred chHHHHHHHHHHHHhhcCceeeeccccccccccCCHHHHhhhcCCCcceEEeecCCCCCCCCCCCCCCccccceeeeEEE
Q 001485 74 PTFQQAIQRLQEYWASVGCSVMQCSNTEVGAGTMNPLTFLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRLQRHTQFQVI 153 (1070)
Q Consensus 74 ~~~q~~i~~l~~~w~~~gc~~~q~~~~e~gagt~~p~t~~~~l~~~~~~~ayv~p~~rp~d~ryg~npnrl~~~~q~qvi 153 (1070)
|||||||++||+||+++||+|+||||+|||||||||+||||+||||||+||||||||||+||||||||||||||||||||
T Consensus 1 m~fQ~iI~~Lq~fWa~~GC~i~QPyD~EvGAGT~hPaTflralgpepw~vAYVqPsRRP~DGRYGeNPNRLq~yyQfQVi 80 (293)
T TIGR00388 1 QTFQGLILKLQEYWANQGCLIVQPYDMEKGAGTMHPMTFLRSLGPEPWAVAYVEPSRRPTDGRYGENPNRLQHYYQFQVV 80 (293)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEcCcccccccccCCHHHHHHhcCCCcceeccccCCCCCCCCCCCCCchhhhheeeeEEE
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCcchHHHHHHHHHhcCCCCCCCceeEecCCCCCCccccccccceeeecCeeeeeeehhhhcCCcccCcceeeehhh
Q 001485 154 LKPDPGNSQDLFIRSLSALGIDVTEHDIRFVEDNWESPVLGAWGLGWEIWMDGMEITQFTYFQQAGSLQLSPVSVEITYG 233 (1070)
Q Consensus 154 ~kp~p~~~q~lyl~sl~~~gi~~~~hdirfved~we~p~lga~glgwevw~~gmeitqftyfqq~gg~~~~~~~~eityg 233 (1070)
|||||+|+|+|||+||++||||+++||||||||||||||||||||||||||||||||||||||||||++|+||++|||||
T Consensus 81 lKPsP~niQelYL~SL~~lGid~~~hDIRFVEDnWEsPTLGAwGlGWEVWldGMEITQFTYFQQvGGi~~~pv~~EITYG 160 (293)
T TIGR00388 81 IKPSPDNIQELYLDSLRALGIDPTEHDIRFVEDNWENPTLGAWGLGWEVWLDGMEVTQFTYFQQVGGLECKPVSVEITYG 160 (293)
T ss_pred ECCCCccHHHHHHHHHHHhCCCccccCeeEeecCCCCCcccccccccEEEECCeeeeeeeeeeeeCCeeccccceeeehh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhCCCceeeeeeCCC----CceecccccchhhhhccccccCCHHHHHHHHHHHHHHHHHHHHcCCCcchhhhH
Q 001485 234 LERILMLLQGVDHFKKIQYADG----ITYGELFLENEKEMSAYYLEHANVHHLQKQFDFFEEESRSLLASGLAIPAYDQL 309 (1070)
Q Consensus 234 ler~~m~~q~~~~~~~~~~~~~----~~yg~~~~~~e~e~s~y~~~~~~~~~~~~~f~~~~~e~~~~~~~~l~~pay~~~ 309 (1070)
|||||||||+|||||||.||++ |||||||+|+|+|||+||||+||+++|+++|++||+||++|++++|++||||+|
T Consensus 161 LERiaMylQ~vd~v~dl~w~~~~~~~vtYgdv~~~~E~e~S~ynFe~ad~~~l~~~F~~~e~ea~~ll~~~L~lPAYd~~ 240 (293)
T TIGR00388 161 LERLAMYIQGVENVYDLEWSDGPLGKTTYGDVFHQNEVEQSTYNFETADVDFLFQLFKQYEKEAQQLLENGLPLPAYEYV 240 (293)
T ss_pred HHHHHHHHhCCCeeeeeeecCCCCcccchhhcccccHHHHhHhccccCCHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHH
Confidence 9999999999999999999997 999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhccccccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcc
Q 001485 310 LKTSHAFNILDSRGFVGVTERARYFGRMRSLARQCAQLWLKTRKSLGHPLGI 361 (1070)
Q Consensus 310 lk~sh~fn~ldar~~~~~~er~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~ 361 (1070)
|||||+|||||||||||||||++||+|||+|||+||++|+++|+++||||..
T Consensus 241 lK~SH~FNlLDARgaIsvtER~~yI~riR~la~~~a~~y~~~r~~~g~pl~~ 292 (293)
T TIGR00388 241 LKCSHSFNLLDARKAISVTERQRYILRIRNLAKGVAEAYYEQREALGFPLCK 292 (293)
T ss_pred HHHHHHHhhHhhccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccC
Confidence 9999999999999999999999999999999999999999999999999864
No 7
>COG0752 GlyQ Glycyl-tRNA synthetase, alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.9e-163 Score=1260.06 Aligned_cols=291 Identities=60% Similarity=1.053 Sum_probs=288.4
Q ss_pred CCcchHHHHHHHHHHHHhhcCceeeeccccccccccCCHHHHhhhcCCCcceEEeecCCCCCCCCCCCCCCccccceeee
Q 001485 71 ASVPTFQQAIQRLQEYWASVGCSVMQCSNTEVGAGTMNPLTFLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRLQRHTQF 150 (1070)
Q Consensus 71 ~~~~~~q~~i~~l~~~w~~~gc~~~q~~~~e~gagt~~p~t~~~~l~~~~~~~ayv~p~~rp~d~ryg~npnrl~~~~q~ 150 (1070)
+++||||+||++||+||++|||+|+||||+|||||||||+||||+||||||++|||||||||+|||||||||||||||||
T Consensus 2 ~~~~~fQ~~IltLq~yW~~qGC~i~QpyD~evGAGT~hPaTfLralGpePw~aAYVqPSRRP~DGRYGenPNRlq~yyQf 81 (298)
T COG0752 2 NKKLTFQGLILTLQNYWAEQGCTILQPYDMEVGAGTFHPATFLRALGPEPWNAAYVQPSRRPTDGRYGENPNRLQHYYQF 81 (298)
T ss_pred CccccHHHHHHHHHHHHHHcCCEEecccccccccCcCChHHHHHhcCCCccceeeeccCCCCCCCCCCCCchhhhhheeE
Confidence 34799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCcchHHHHHHHHHhcCCCCCCCceeEecCCCCCCccccccccceeeecCeeeeeeehhhhcCCcccCcceeee
Q 001485 151 QVILKPDPGNSQDLFIRSLSALGIDVTEHDIRFVEDNWESPVLGAWGLGWEIWMDGMEITQFTYFQQAGSLQLSPVSVEI 230 (1070)
Q Consensus 151 qvi~kp~p~~~q~lyl~sl~~~gi~~~~hdirfved~we~p~lga~glgwevw~~gmeitqftyfqq~gg~~~~~~~~ei 230 (1070)
||||||||+|||||||+||++||||++.||||||||||||||||||||||||||||||||||||||||||++|+||++||
T Consensus 82 QVilKPsP~NiQeLYL~SL~~lGid~~~HDIRFVEDnWE~PTlGawGlGWEVWldGMEvTQFTYFQQvGGiec~pV~~EI 161 (298)
T COG0752 82 QVIIKPSPDNIQELYLGSLEALGIDPLEHDIRFVEDNWENPTLGAWGLGWEVWLDGMEVTQFTYFQQVGGLECKPVSGEI 161 (298)
T ss_pred EEEecCCCccHHHHHHHHHHHcCCChhhcceeeeccCCCCCcccccccceeEEEcCeeeeeeehhhhhCCeeccceeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHhCCCceeeeeeCCC----CceecccccchhhhhccccccCCHHHHHHHHHHHHHHHHHHHHcCCCcchh
Q 001485 231 TYGLERILMLLQGVDHFKKIQYADG----ITYGELFLENEKEMSAYYLEHANVHHLQKQFDFFEEESRSLLASGLAIPAY 306 (1070)
Q Consensus 231 tygler~~m~~q~~~~~~~~~~~~~----~~yg~~~~~~e~e~s~y~~~~~~~~~~~~~f~~~~~e~~~~~~~~l~~pay 306 (1070)
||||||||||||+|||||||.||++ +||||||+|+|+|+|+||||+||++||+++|++||+||+++++.||++|||
T Consensus 162 TYGlERlAmYiQ~vdnVydl~W~~~~~~~~tYgdvf~q~E~e~S~ynFE~ad~~~L~~~F~~~e~Ea~~ll~~~L~lPAY 241 (298)
T COG0752 162 TYGLERLAMYIQGVDNVYDLEWNDGPGGKVTYGDVFLQNEVEQSKYNFEYADVDMLFRHFDDYEKEAKRLLELGLVLPAY 241 (298)
T ss_pred ehhHHHHHHHHhCccceeEEeecCCCCCceehhhhhhhhHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHHcCCCcchH
Confidence 9999999999999999999999998 999999999999999999999999999999999999999999999999999
Q ss_pred hhHHhhhhccccccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcc
Q 001485 307 DQLLKTSHAFNILDSRGFVGVTERARYFGRMRSLARQCAQLWLKTRKSLGHPLGI 361 (1070)
Q Consensus 307 ~~~lk~sh~fn~ldar~~~~~~er~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~ 361 (1070)
|+||||||+|||||||||||||||++||+|||+|||+||++|++.|+++|||+..
T Consensus 242 d~vlKasH~FNlLDARgaISVtER~~YI~RiR~Lar~~a~~y~e~r~~lgfp~~~ 296 (298)
T COG0752 242 DYVLKASHTFNLLDARGAISVTERQRYILRIRNLARAVAEAYLESREALGFPLLK 296 (298)
T ss_pred HHHHHhhhhhhhhccccceeehHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence 9999999999999999999999999999999999999999999999999999975
No 8
>PRK09348 glyQ glycyl-tRNA synthetase subunit alpha; Validated
Probab=100.00 E-value=3.7e-161 Score=1258.15 Aligned_cols=282 Identities=62% Similarity=1.078 Sum_probs=280.0
Q ss_pred CcchHHHHHHHHHHHHhhcCceeeeccccccccccCCHHHHhhhcCCCcceEEeecCCCCCCCCCCCCCCccccceeeeE
Q 001485 72 SVPTFQQAIQRLQEYWASVGCSVMQCSNTEVGAGTMNPLTFLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRLQRHTQFQ 151 (1070)
Q Consensus 72 ~~~~~q~~i~~l~~~w~~~gc~~~q~~~~e~gagt~~p~t~~~~l~~~~~~~ayv~p~~rp~d~ryg~npnrl~~~~q~q 151 (1070)
.+|||||||++||+||+++||+|+||||+|||||||||+||||+||||||+||||||||||+||||||||||||||||||
T Consensus 2 ~~~~fQ~iI~~Lq~fWa~~GC~i~qPyD~EvGAGT~~P~Tflr~Lgpepw~vaYvqPsRRP~DGRYGeNPNRLq~y~QfQ 81 (283)
T PRK09348 2 KKMTFQDIILTLQDYWADQGCVILQPYDMEVGAGTFHPATFLRALGPEPWNAAYVQPSRRPTDGRYGENPNRLQHYYQFQ 81 (283)
T ss_pred CCCcHHHHHHHHHHHHHHCCCEEECCcccccccccCCHHHHHHhcCCCccccccccCCCCCCCCCcCCCchhhhhheeeE
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCcchHHHHHHHHHhcCCCCCCCceeEecCCCCCCccccccccceeeecCeeeeeeehhhhcCCcccCcceeeeh
Q 001485 152 VILKPDPGNSQDLFIRSLSALGIDVTEHDIRFVEDNWESPVLGAWGLGWEIWMDGMEITQFTYFQQAGSLQLSPVSVEIT 231 (1070)
Q Consensus 152 vi~kp~p~~~q~lyl~sl~~~gi~~~~hdirfved~we~p~lga~glgwevw~~gmeitqftyfqq~gg~~~~~~~~eit 231 (1070)
|||||||+|+|+|||+||++||||+++||||||||||||||||||||||||||||||||||||||||||++|+||++|||
T Consensus 82 VilKPsP~niQelYL~SL~~lGid~~~hDIRFVEDnWEsPTLGAwGlGWEVWldGMEITQFTYFQQvGGi~~~pv~~EIT 161 (283)
T PRK09348 82 VILKPSPDNIQELYLGSLEALGIDPLEHDIRFVEDNWESPTLGAWGLGWEVWLDGMEVTQFTYFQQVGGIECKPVTGEIT 161 (283)
T ss_pred EEEcCCCccHHHHHHHHHHHhCCCccccceeEeecCCCCCcccccccceEEEECCeeeeeeeeeeeeCCeeccccceeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHhCCCceeeeeeCCCCceecccccchhhhhccccccCCHHHHHHHHHHHHHHHHHHHHcCCCcchhhhHHh
Q 001485 232 YGLERILMLLQGVDHFKKIQYADGITYGELFLENEKEMSAYYLEHANVHHLQKQFDFFEEESRSLLASGLAIPAYDQLLK 311 (1070)
Q Consensus 232 ygler~~m~~q~~~~~~~~~~~~~~~yg~~~~~~e~e~s~y~~~~~~~~~~~~~f~~~~~e~~~~~~~~l~~pay~~~lk 311 (1070)
|||||||||||+|||||||.||+++||||||+++|+|||+||||+||+++|+++|++||+||++|++++|++||||+|||
T Consensus 162 YGLERiamylQ~vd~v~dl~w~~~~tYgdv~~~~E~e~S~ynFe~ad~~~l~~~F~~~e~e~~~ll~~~L~lPAYd~~lK 241 (283)
T PRK09348 162 YGLERLAMYLQGVDNVYDLVWNDGVTYGDVFLQNEVEQSKYNFEHADVEMLFKLFDDYEKEAKRLLEKGLPLPAYDYVLK 241 (283)
T ss_pred hhHHHHHHHHhCCCceeeeecCCCCceeeeccccHHHHhHhcccccCHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccccccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHh
Q 001485 312 TSHAFNILDSRGFVGVTERARYFGRMRSLARQCAQLWLKTRK 353 (1070)
Q Consensus 312 ~sh~fn~ldar~~~~~~er~~~~~~~r~l~~~~~~~~~~~~~ 353 (1070)
|||+|||||||||||||||++||+|||+|||.||++|+++|+
T Consensus 242 ~SH~FNlLDARgaIsvtER~~yI~rvR~la~~~a~~y~~~~~ 283 (283)
T PRK09348 242 ASHTFNLLDARGAISVTERQRYILRIRNLARAVAEAYLESRE 283 (283)
T ss_pred HHHHHHhHhhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999999999999884
No 9
>cd00733 GlyRS_alpha_core Class II Glycyl-tRNA synthetase (GlyRS) alpha subunit core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes and in arabidopsis. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. This alignment contains only sequences from the GlyRS form which heterotetramerizes. The homodimer form of GlyRS is in a different family of class II aaRS. Class II assignment is based upon structure and the presence of three characteristic sequence motifs.
Probab=100.00 E-value=2e-160 Score=1250.78 Aligned_cols=279 Identities=62% Similarity=1.084 Sum_probs=277.8
Q ss_pred hHHHHHHHHHHHHhhcCceeeeccccccccccCCHHHHhhhcCCCcceEEeecCCCCCCCCCCCCCCccccceeeeEEEe
Q 001485 75 TFQQAIQRLQEYWASVGCSVMQCSNTEVGAGTMNPLTFLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRLQRHTQFQVIL 154 (1070)
Q Consensus 75 ~~q~~i~~l~~~w~~~gc~~~q~~~~e~gagt~~p~t~~~~l~~~~~~~ayv~p~~rp~d~ryg~npnrl~~~~q~qvi~ 154 (1070)
||||||++||+||+++||+|+||||+|||||||||+||||+||||||+||||||||||+|||||||||||||||||||||
T Consensus 1 ~fQ~iI~~Lq~fW~~~GC~i~qPyD~EvGAGT~hPaTflr~Lgpepw~vAYVqPsrRP~DGRYGeNPNRLq~y~QfQVii 80 (279)
T cd00733 1 TFQDLILKLQKFWASQGCLIIQPYDMEVGAGTFHPATFLRALGPEPWNVAYVEPSRRPTDGRYGENPNRLQHYYQFQVII 80 (279)
T ss_pred CHHHHHHHHHHHHHHCCCEEEcCcccccccccCCHHHHHHhcCCCcceeccccCCCCCCCCCcCCCchhhhhheeeEEEE
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcchHHHHHHHHHhcCCCCCCCceeEecCCCCCCccccccccceeeecCeeeeeeehhhhcCCcccCcceeeehhhh
Q 001485 155 KPDPGNSQDLFIRSLSALGIDVTEHDIRFVEDNWESPVLGAWGLGWEIWMDGMEITQFTYFQQAGSLQLSPVSVEITYGL 234 (1070)
Q Consensus 155 kp~p~~~q~lyl~sl~~~gi~~~~hdirfved~we~p~lga~glgwevw~~gmeitqftyfqq~gg~~~~~~~~eitygl 234 (1070)
||||+|+|+|||+||++||||+++||||||||||||||||||||||||||||||||||||||||||++|+||++||||||
T Consensus 81 KPsP~niQelYL~SL~~lGid~~~hDIRFVEDnWEsPTLGAwGLGWEVWldGMEITQFTYFQQvGGi~~~pv~~EiTYGL 160 (279)
T cd00733 81 KPSPDNIQELYLESLEALGINPKEHDIRFVEDNWESPTLGAWGLGWEVWLDGMEVTQFTYFQQVGGIPCKPISVEITYGL 160 (279)
T ss_pred CCCCccHHHHHHHHHHHhCCCccccCeeEeecCCCCCcccccccccEEEECCeeeeeeeeeeeeCCeeccccceeeehhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCceeeeeeCCCCceecccccchhhhhccccccCCHHHHHHHHHHHHHHHHHHHHcCCCcchhhhHHhhhh
Q 001485 235 ERILMLLQGVDHFKKIQYADGITYGELFLENEKEMSAYYLEHANVHHLQKQFDFFEEESRSLLASGLAIPAYDQLLKTSH 314 (1070)
Q Consensus 235 er~~m~~q~~~~~~~~~~~~~~~yg~~~~~~e~e~s~y~~~~~~~~~~~~~f~~~~~e~~~~~~~~l~~pay~~~lk~sh 314 (1070)
||||||||+|||||||.||++|||||||+|+|+|||+||||+||+++|+++|++||+||++|++++|++||||+||||||
T Consensus 161 ERiamylQ~vd~v~dl~w~~~vtYgdvf~~~E~e~S~ynFe~ad~~~l~~~F~~~e~e~~~ll~~~L~lPAYd~~lk~sH 240 (279)
T cd00733 161 ERIAMYLQGVDNVYDIEWNKKITYGDVFLQNEIEQSVYNFEYANVDMLFQLFEDYEKEAKRLLELGLPLPAYDYVLKCSH 240 (279)
T ss_pred HHHHHHHhCCCceeccccCCCCchhhhccccHHHHhHhccccCCHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHh
Q 001485 315 AFNILDSRGFVGVTERARYFGRMRSLARQCAQLWLKTRK 353 (1070)
Q Consensus 315 ~fn~ldar~~~~~~er~~~~~~~r~l~~~~~~~~~~~~~ 353 (1070)
+|||||||||||||||++||+|||+|||+||++|+++|+
T Consensus 241 ~FNlLDARgaIsvteR~~yI~riR~la~~~a~~y~~~r~ 279 (279)
T cd00733 241 TFNLLDARGAISVTERQRYILRIRNLAREIAKLYVEQRE 279 (279)
T ss_pred HHHhHhhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999999999885
No 10
>PF02091 tRNA-synt_2e: Glycyl-tRNA synthetase alpha subunit; InterPro: IPR002310 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. In eubacteria, glycyl-tRNA synthetase (6.1.1.14 from EC) is an alpha2/beta2 tetramer composed of 2 different subunits [, , ]. In some eubacteria, in archaea and eukaryota, glycyl-tRNA synthetase is an alpha2 dimer (see IPR002315 from INTERPRO). It belongs to class IIc and is one of the most complex synthetases. What is most interesting is the lack of similarity between the two types: divergence at the sequence level is so great that it is impossible to infer descent from common genes. The alpha and beta subunits (see IPR002311 from INTERPRO) also lack significant sequence similarity. However, they are translated from a single mRNA [], and a single chain glycyl-tRNA synthetase from Chlamydia trachomatis has been found to have significant similarity with both domains, suggesting divergence from a single polypeptide chain []. This entry represents the alpha subunit of glycyl-tRNA synthetase.; GO: 0000166 nucleotide binding, 0004820 glycine-tRNA ligase activity, 0005524 ATP binding, 0006426 glycyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3RF1_A 3UFG_B 3RGL_B 1J5W_B.
Probab=100.00 E-value=3.6e-160 Score=1256.29 Aligned_cols=284 Identities=63% Similarity=1.125 Sum_probs=248.8
Q ss_pred HHHHHHHHHHHHhhcCceeeeccccccccccCCHHHHhhhcCCCcceEEeecCCCCCCCCCCCCCCccccceeeeEEEec
Q 001485 76 FQQAIQRLQEYWASVGCSVMQCSNTEVGAGTMNPLTFLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILK 155 (1070)
Q Consensus 76 ~q~~i~~l~~~w~~~gc~~~q~~~~e~gagt~~p~t~~~~l~~~~~~~ayv~p~~rp~d~ryg~npnrl~~~~q~qvi~k 155 (1070)
|||||++||+||+++||+|+||||+|||||||||+||||+||||||+||||||||||+||||||||||||||||||||||
T Consensus 1 fQ~iI~~Lq~fW~~~GC~i~qPyD~evGAGT~~P~Tflr~Lgpepw~vaYVqPsrRP~DGRYGeNPNRLq~y~QfQVilK 80 (284)
T PF02091_consen 1 FQDIILTLQKFWADQGCIILQPYDIEVGAGTFHPATFLRALGPEPWNVAYVQPSRRPTDGRYGENPNRLQHYYQFQVILK 80 (284)
T ss_dssp HHHHHHHHHHHHHCTT-EE----SS--SSGGGSHHHHTTTSSSS-EEEEEEEEEE-GGG--TTTSSS--SEEEEEEEEEE
T ss_pred CHHHHHHHHHHHHHCCCEEECCcccccccccCCHHHHHHhcCCCCccccccccCCCCCCCccCCCchHhhhhheeEEEEc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHhcCCCCCCCceeEecCCCCCCccccccccceeeecCeeeeeeehhhhcCCcccCcceeeehhhhH
Q 001485 156 PDPGNSQDLFIRSLSALGIDVTEHDIRFVEDNWESPVLGAWGLGWEIWMDGMEITQFTYFQQAGSLQLSPVSVEITYGLE 235 (1070)
Q Consensus 156 p~p~~~q~lyl~sl~~~gi~~~~hdirfved~we~p~lga~glgwevw~~gmeitqftyfqq~gg~~~~~~~~eitygle 235 (1070)
|||+|+|+|||+||++||||+++||||||||||||||||||||||||||||||||||||||||||++|+|||+|||||||
T Consensus 81 PsP~niq~lYL~SL~~lGId~~~hDIRFVEDnWEsPtLGAwGlGWEVWldGMEITQfTYFQQvGGi~~~pv~~EITYGLE 160 (284)
T PF02091_consen 81 PSPDNIQELYLESLEALGIDPKEHDIRFVEDNWESPTLGAWGLGWEVWLDGMEITQFTYFQQVGGIDCKPVSVEITYGLE 160 (284)
T ss_dssp S--TTHHHHHHHHHHHCT--CCCS-EEEEEE-EEETTTTEEEEEEEEEETTCEEEEEEEEEEETTEE-SS--EEEEEEHH
T ss_pred CCCccHHHHHHHHHHHhCCCccccceeEeecCCCCCcccccccccEEEECCEEEEEeeeeeeeCCccccccceehhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCceeeeeeCCCCceecccccchhhhhccccccCCHHHHHHHHHHHHHHHHHHHHcCCCcchhhhHHhhhhc
Q 001485 236 RILMLLQGVDHFKKIQYADGITYGELFLENEKEMSAYYLEHANVHHLQKQFDFFEEESRSLLASGLAIPAYDQLLKTSHA 315 (1070)
Q Consensus 236 r~~m~~q~~~~~~~~~~~~~~~yg~~~~~~e~e~s~y~~~~~~~~~~~~~f~~~~~e~~~~~~~~l~~pay~~~lk~sh~ 315 (1070)
|||||||+|||||||.||++|||||||+++|+|+|+||||+||+++|+++|++||+||++|++++|++||||+||||||+
T Consensus 161 RiamylQ~vdnv~dl~w~~~vtYgdif~~~E~e~S~ynFe~ad~~~l~~~F~~~e~E~~~li~~~L~lpaYd~~lK~sH~ 240 (284)
T PF02091_consen 161 RIAMYLQGVDNVYDLIWNDGVTYGDIFLQNEVEFSKYNFEHADVDMLFKLFDDYEKEAKRLIELGLPLPAYDYVLKCSHT 240 (284)
T ss_dssp HHHHHHCT-SSGGGSEEEEEEEHHHHHHHHHHHHHHHHHHTS-HHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCeeEeeeecCCcchhhhcchhHHHHHhhcchhcCHHHHHHHHHHHHHHHHHHhccCCCccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 001485 316 FNILDSRGFVGVTERARYFGRMRSLARQCAQLWLKTRKSLGHPL 359 (1070)
Q Consensus 316 fn~ldar~~~~~~er~~~~~~~r~l~~~~~~~~~~~~~~~~~~~ 359 (1070)
|||||||||||||||++||+|||+|||+||++|+++|++|||||
T Consensus 241 FNlLDARgaisvtER~~yi~riR~la~~~a~~y~~~re~lgfPL 284 (284)
T PF02091_consen 241 FNLLDARGAISVTERQNYIGRIRNLAKACAEAYLEQREELGFPL 284 (284)
T ss_dssp HHHHHHTT---HHHHHHHHHHHHHHHHHHHHHHHHHH-------
T ss_pred HHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999999999999999999999999997
No 11
>cd07956 Anticodon_Ia_Arg Anticodon-binding domain of arginyl tRNA synthetases. This domain is found in arginyl tRNA synthetases (ArgRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ArgRS catalyzes the transfer of arginine to the 3'-end of its tRNA.
Probab=99.43 E-value=3.7e-13 Score=135.77 Aligned_cols=114 Identities=19% Similarity=0.244 Sum_probs=95.4
Q ss_pred CCChhHHHHHHhhhhhhccCCCC--CCccCCCcccCCCHHHHHHHHHHHHHhhhcCC---CCChHHHHHHHhhhchHHHh
Q 001485 955 GQLFPKVVEAYSRPTRIVRGKDV--DTALEVDETAFETIEEKALWTVYLSAKNKIHP---GINVDDFIEISSELVQPLED 1029 (1070)
Q Consensus 955 ~~~f~~l~~a~KRv~NIlkk~~~--~~~~~vd~~lf~~~~Ek~L~~~~~~i~~~~~~---~~~~~~~~~~l~~L~~~Id~ 1029 (1070)
.....-+..+|+|+.||++|.+. .....+|+++|++++|++|+..+..+.+.+.. ..++...+..+.+|.++++.
T Consensus 33 ~~~~~yi~ya~aRi~nIl~k~~~~~~~~~~~~~~ll~~~~E~~L~~~l~~~~~~i~~~~~~~~~~~l~~~l~~L~~~~~~ 112 (156)
T cd07956 33 GDTGPYLQYAHARLCSILRKAGETIEAEADADLSLLPEPDERDLILLLAKFPEVVKNAAETLEPHTIATYLFDLAHAFSK 112 (156)
T ss_pred CCCchhHHHHHHHHHHHHHhCCCcCccccccchhhcCCHHHHHHHHHHHHhHHHHHHHHHHcCcHHHHHHHHHHHHHHHH
Confidence 34667899999999999998542 11235899999999999999999888554432 35677788889999999999
Q ss_pred hhccceecCCcHHHHHHHHHHHHHHHHhhhhcccCCCCC
Q 001485 1030 FFNHVFVMVEEERIRKNRLALLKKIADLPKGIVDLSLLP 1068 (1070)
Q Consensus 1030 FFD~VmVm~eD~~IR~NRLaLL~~i~~l~~~iaDfs~L~ 1068 (1070)
|||+||||++|+++|+|||+||+.+.+.+....++-.|+
T Consensus 113 ffd~v~V~~~~~~i~~nRL~Ll~~v~~vl~~~l~llgi~ 151 (156)
T cd07956 113 FYNACPVLGAEEELRNARLALVAAARQVLANGLDLLGIE 151 (156)
T ss_pred HHhcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999988876543
No 12
>smart00836 DALR_1 DALR anticodon binding domain. This all alpha helical domain is the anticodon binding domain of Arginyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids PUBMED:10447505.
Probab=99.35 E-value=1.2e-12 Score=126.12 Aligned_cols=102 Identities=24% Similarity=0.292 Sum_probs=85.6
Q ss_pred HHhhhhhhccCCCC-C-C-c--cCCCcccCCCHHHHHHHHHHHHHhhhcCC---CCChHHHHHHHhhhchHHHhhhccce
Q 001485 964 AYSRPTRIVRGKDV-D-T-A--LEVDETAFETIEEKALWTVYLSAKNKIHP---GINVDDFIEISSELVQPLEDFFNHVF 1035 (1070)
Q Consensus 964 a~KRv~NIlkk~~~-~-~-~--~~vd~~lf~~~~Ek~L~~~~~~i~~~~~~---~~~~~~~~~~l~~L~~~Id~FFD~Vm 1035 (1070)
+++|+.||++|.+. . . . ..+|.++|++++|++|+..+..+.+.+.. ..++......+.+|.++++.|||+|+
T Consensus 4 ~~~Ri~nIl~k~~~~~~~~~~~~~~~~~l~~~~~E~~L~~~i~~~~~~i~~~~~~~~~~~l~~~l~~L~~~~~~fy~~v~ 83 (122)
T smart00836 4 AHARICSILRKAGEAGLTLPDIADADLSLLTEPEELALLRLLARFPEVLEAAAETLEPHRLANYLYDLASAFHSFYNKCR 83 (122)
T ss_pred HHHHHHHHHHHHHhcCCCccccccchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHccCc
Confidence 78999999997542 1 1 1 24788999999999999999888554432 34577778889999999999999999
Q ss_pred ecCCc-HHHHHHHHHHHHHHHHhhhhcccCC
Q 001485 1036 VMVEE-ERIRKNRLALLKKIADLPKGIVDLS 1065 (1070)
Q Consensus 1036 Vm~eD-~~IR~NRLaLL~~i~~l~~~iaDfs 1065 (1070)
||++| +++|+|||+|+..+++.+..++++=
T Consensus 84 V~~~~~~~~~~~RL~Ll~~~~~~l~~~~~ll 114 (122)
T smart00836 84 VLGEENPELRAARLALLKAVRQVLANGLRLL 114 (122)
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99998 9999999999999999999999853
No 13
>PF05746 DALR_1: DALR anticodon binding domain; InterPro: IPR008909 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This all alpha helical domain is the anticodon binding domain of Arginyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids [].; GO: 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1F7V_A 1F7U_A 1BS2_A 1IQ0_A.
Probab=98.92 E-value=5.6e-10 Score=106.87 Aligned_cols=104 Identities=30% Similarity=0.425 Sum_probs=79.8
Q ss_pred HHHHHhhhhhhccCCCCCC-ccCCCccc-CCCHHHHHHHHHHHHHhhhcCC---CCChHHHHHHHhhhchHHHhhhccce
Q 001485 961 VVEAYSRPTRIVRGKDVDT-ALEVDETA-FETIEEKALWTVYLSAKNKIHP---GINVDDFIEISSELVQPLEDFFNHVF 1035 (1070)
Q Consensus 961 l~~a~KRv~NIlkk~~~~~-~~~vd~~l-f~~~~Ek~L~~~~~~i~~~~~~---~~~~~~~~~~l~~L~~~Id~FFD~Vm 1035 (1070)
+.-+++|+.||++|.+... ....+... +++++|++|+..+......+.. ..++......+.+|.+.++.|||+|+
T Consensus 1 v~Ya~aRi~sIl~k~~~~~~~~~~~~~~~~~~~~e~~L~~~l~~~~~~l~~a~~~~~p~~l~~yL~~La~~f~~fy~~~~ 80 (119)
T PF05746_consen 1 VQYAYARISSILRKAEESGINDEYDDDFLLEEEEERELLKQLARFPDVLEKAAKDLEPHKLCDYLYELAQAFNSFYDNVR 80 (119)
T ss_dssp HHHHHHHHHHHHHHCTCTTCCCCHCCHHHS-SHHHHHHHHHHCTHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHS-
T ss_pred ChHHHHHHHHHHHcCCCcCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3568999999999764321 12223333 6899999999999776554433 24577778889999999999999999
Q ss_pred ecCCcHHHH-HHHHHHHHHHHHhhhhcccC
Q 001485 1036 VMVEEERIR-KNRLALLKKIADLPKGIVDL 1064 (1070)
Q Consensus 1036 Vm~eD~~IR-~NRLaLL~~i~~l~~~iaDf 1064 (1070)
||++|+.+| +|||+|+..+...+....|+
T Consensus 81 I~~~~~~~~~~~RL~Ll~~v~~vl~~~l~l 110 (119)
T PF05746_consen 81 ILDEDEEIRKNNRLALLKAVRQVLKNGLDL 110 (119)
T ss_dssp STTSTTCHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999 99999999999998877664
No 14
>cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ.
Probab=97.01 E-value=0.0014 Score=67.58 Aligned_cols=115 Identities=31% Similarity=0.397 Sum_probs=84.3
Q ss_pred CCCcceEEeecCCCCCCCCCCCCCCccccceeeeEEEecCCC-------cchHHHHHHHHHhcCCCCCCCceeEecCCCC
Q 001485 117 GPEPWNVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDP-------GNSQDLFIRSLSALGIDVTEHDIRFVEDNWE 189 (1070)
Q Consensus 117 ~~~~~~~ayv~p~~rp~d~ryg~npnrl~~~~q~qvi~kp~p-------~~~q~lyl~sl~~~gi~~~~hdirfved~we 189 (1070)
+..|.++.|+.++.|+.++..+ ++|++.+.|.-+.+--.+ .++..++-..|+.+|+ .++++|+...+.
T Consensus 72 ~~~~~~lfeig~vfr~e~~~~~--~~~~~ef~~l~~~~~g~~~~~~~~~~~~~~~~~~~l~~lg~---~~~~~~~~~~~~ 146 (211)
T cd00768 72 RKLPLRLAEIGPAFRNEGGRRG--LRRVREFTQLEGEVFGEDGEEASEFEELIELTEELLRALGI---KLDIVFVEKTPG 146 (211)
T ss_pred ccCCEEEEEEcceeecCCCccc--cccceeEEEcCEEEEcCCchhHHHHHHHHHHHHHHHHHcCC---CcceEEEecCch
Confidence 4589999999999999765333 578888888777776544 4577788899999998 346788866543
Q ss_pred CCcc-ccccccceeeec-----CeeeeeeehhhhcC------------CcccCcceeeehhhhHHH
Q 001485 190 SPVL-GAWGLGWEIWMD-----GMEITQFTYFQQAG------------SLQLSPVSVEITYGLERI 237 (1070)
Q Consensus 190 ~p~l-ga~glgwevw~~-----gmeitqftyfqq~g------------g~~~~~~~~eitygler~ 237 (1070)
+ -. +.+|..++|+++ |.||..+.+..+.. +..-.|++...|.|+||+
T Consensus 147 ~-~~~~~~g~~~~i~~~~~~~~~~eig~~g~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~R~ 211 (211)
T cd00768 147 E-FSPGGAGPGFEIEVDHPEGRGLEIGSGGYRQDEQARAADLYFLDEALEYRYPPTIGFGLGLERL 211 (211)
T ss_pred h-hccccCCceEEEEEEccCCCeEEEeeceeecCchhHhhhhheecccccccCceeecCccCccCC
Confidence 2 23 589999999999 99988766554322 222357777788888874
No 15
>PRK13902 alaS alanyl-tRNA synthetase; Provisional
Probab=96.89 E-value=0.0065 Score=77.58 Aligned_cols=266 Identities=19% Similarity=0.303 Sum_probs=155.7
Q ss_pred ccCCCCCCCCCCcccCCCcchHHHHHHHHHHHHhhcCceeeecccccc---------cccc--CCHHHHhhhcCCCcceE
Q 001485 55 AIQEPPSTEPNNERQKASVPTFQQAIQRLQEYWASVGCSVMQCSNTEV---------GAGT--MNPLTFLRVLGPEPWNV 123 (1070)
Q Consensus 55 ~~~~~ss~~~~~~~~~~~~~~~q~~i~~l~~~w~~~gc~~~q~~~~e~---------gagt--~~p~t~~~~l~~~~~~~ 123 (1070)
+.|-..++=-.+.+.. ..||..+|-.+--+|..++|+.+..+|..=- .||- |-|.-....--|..=++
T Consensus 41 d~pc~~y~fi~~~~~~-~~~~~~eiR~~Fl~FF~~~gH~~v~s~pvvprw~dDllft~Agm~~Fkp~f~~G~~~pp~~~~ 119 (900)
T PRK13902 41 DAPCDEYSFIGNPIFS-KKYTLKEMREKFLSFFEKHGHTRIERYPVVARWRDDVYLTIASIYDFQPWVTSGLVPPPANPL 119 (900)
T ss_pred CCCCccceecCCCCcC-CCCCHHHHHHHHHHHHHhCCCEEcCCcCcCCCCCCCeeeeecchhhhhHHhcCCCCCCCCCCc
Confidence 3444444333333222 3489999999999999999999999886433 4553 44443223333433578
Q ss_pred EeecCCCCCCCCCCCCCCccc-cceeeeEEEecCCCc----------chHHHHHHHHH-hcCCCCCCCceeEecCCCCCC
Q 001485 124 AYVEPSIRPDDSRYGENPNRL-QRHTQFQVILKPDPG----------NSQDLFIRSLS-ALGIDVTEHDIRFVEDNWESP 191 (1070)
Q Consensus 124 ayv~p~~rp~d~ryg~npnrl-~~~~q~qvi~kp~p~----------~~q~lyl~sl~-~~gi~~~~hdirfved~we~p 191 (1070)
+=.|||.|=.|= ||==|= .||+=|-.+=-=|-+ ...++=-+=|. .||||+ +.|-|.|+=|+-=
T Consensus 120 ~~sQ~CiR~nDl---dnVG~t~rH~T~FEMlGn~sFg~~~~~~YfK~eaI~~a~e~lt~~lgi~~--~~I~~~enfW~~G 194 (900)
T PRK13902 120 VISQPCIRLNDI---DNVGRTGRHLTSFEMMAHHAFNYPDKEVYWKDETVEYCFEFFTKELGIDP--EEITFKESWWEGG 194 (900)
T ss_pred eecccccchhhh---hhccccCCchhhhhhccceeeCCCCcccccHHHHHHHHHHHHHhhcCCCH--HHeeecccccCCC
Confidence 999999998773 222222 466666655443333 12222233343 399998 6798866666544
Q ss_pred ccccccccceeeecCeeeeeeehh--hhcCCcccCcc---eeeehhhhHHHHHHHhCCCceeeeeeCC---------CCc
Q 001485 192 VLGAWGLGWEIWMDGMEITQFTYF--QQAGSLQLSPV---SVEITYGLERILMLLQGVDHFKKIQYAD---------GIT 257 (1070)
Q Consensus 192 ~lga~glgwevw~~gmeitqftyf--qq~gg~~~~~~---~~eitygler~~m~~q~~~~~~~~~~~~---------~~~ 257 (1070)
|--|==-||-..|+||-=.-+. .+.+| .+.|. ++---|||||||+.+||+.++||..+.+ |+.
T Consensus 195 --GpcGPcsEi~~~glEiwnlVFmqy~~~~g-~~~~Lp~k~VDTG~GLER~~~v~qg~~t~ydt~f~~ii~~i~~~~g~~ 271 (900)
T PRK13902 195 --GNAGPCFEVLVRGLELATLVFMQYKKDGN-RYVEMPLKIVDTGYGLERIAWASQGTPTAYDAIFGELVDKLKENAGVE 271 (900)
T ss_pred --CCCCCceeeeeCCEEeeeeeeeEEEcCCC-eeeeCCCCeeeCCcCHHHHHHHHcCCCchHHHHHHHHHHHHHHHhCCC
Confidence 8888888999999998432222 22244 34443 4555699999999999999999997775 677
Q ss_pred eec--ccccchhhhhccccccCCHHHHHHHHHHH-------HHHHHHHHHcCCCcchhhhHHhhhhc--cccccccCCcc
Q 001485 258 YGE--LFLENEKEMSAYYLEHANVHHLQKQFDFF-------EEESRSLLASGLAIPAYDQLLKTSHA--FNILDSRGFVG 326 (1070)
Q Consensus 258 yg~--~~~~~e~e~s~y~~~~~~~~~~~~~f~~~-------~~e~~~~~~~~l~~pay~~~lk~sh~--fn~ldar~~~~ 326 (1070)
|++ |..++-+-....+. .+++.+..+++.- .+|-+++++.. -++ -.=|-|+ .-.+=|-|++-
T Consensus 272 ~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~--~vIaDH~R~~~f~i~DGv~P 344 (900)
T PRK13902 272 EPDEEILAEAARLAGLMDI--EEIEDLRSLRQKVAKKLGIDVEELEELLEPL---EAI--YAIADHTRTLAFMLGDGIVP 344 (900)
T ss_pred cccchhhhhhhhhcccCCc--ccchhHHHHHHHHHhhcccchhhhhhhcccc---ceE--EEEecHHHHHHHHHhCCCcC
Confidence 764 44433332222222 2333333333321 12333333221 111 0012221 11233669999
Q ss_pred hhhhhhHHHH
Q 001485 327 VTERARYFGR 336 (1070)
Q Consensus 327 ~~er~~~~~~ 336 (1070)
-++-..|+.|
T Consensus 345 sN~grGYvlR 354 (900)
T PRK13902 345 SNVGEGYLAR 354 (900)
T ss_pred CCCCcchHHH
Confidence 9999999875
No 16
>PRK01584 alanyl-tRNA synthetase; Provisional
Probab=96.64 E-value=0.0034 Score=76.58 Aligned_cols=169 Identities=23% Similarity=0.309 Sum_probs=97.4
Q ss_pred chHHHHHHHHHHHHhhcCceeeecccc---------ccccc--cCCHHHHhhhcCCCcceEEeecCCCCCCCC-CCCCCC
Q 001485 74 PTFQQAIQRLQEYWASVGCSVMQCSNT---------EVGAG--TMNPLTFLRVLGPEPWNVAYVEPSIRPDDS-RYGENP 141 (1070)
Q Consensus 74 ~~~q~~i~~l~~~w~~~gc~~~q~~~~---------e~gag--t~~p~t~~~~l~~~~~~~ayv~p~~rp~d~-ryg~np 141 (1070)
||-.+|-.+--+|..++|+.+..+|.. -+.|| .|-|. |+..--|.--+++=.|+|.|=.|= .=| .
T Consensus 1 ~~~~eiR~~fl~FF~~kgH~~~~s~slvp~~d~tllftnAGm~~fk~~-f~G~~~p~~~r~~~~QkCiR~~Dle~VG-~- 77 (594)
T PRK01584 1 MTLDELRKKYIDFFKSKGHVEIAGKSLIPENDPTVLFTTAGMHPLVPY-LLGEPHPSGTRLVDVQKCLRTGDIDEVG-D- 77 (594)
T ss_pred CCHHHHHHHHHHHHHhCCCEEcCCCCcCCCCCCCeeeeccchhhhhHH-hcCCCCCCCCCccccccccccccccccC-C-
Confidence 566788888999999999999876643 23444 34443 332222333569999999998772 123 1
Q ss_pred ccccceeeeEEEecCCCcc----------------------------------------hHHHHHHHHHhcCCCCCCCce
Q 001485 142 NRLQRHTQFQVILKPDPGN----------------------------------------SQDLFIRSLSALGIDVTEHDI 181 (1070)
Q Consensus 142 nrl~~~~q~qvi~kp~p~~----------------------------------------~q~lyl~sl~~~gi~~~~hdi 181 (1070)
+| ||+=|..+=-=|-++ =+|-|===++ +|+... | |
T Consensus 78 ~r--HhTfFEMlGnfSfgdYfK~eai~~awe~lt~~~~l~l~~~rl~vTv~~~~~~~~~D~Ea~~iW~~-~g~~~~-r-I 152 (594)
T PRK01584 78 LS--HLTFFEMLGNWSLGAYFKEESIKYSFEFLTSPDYLNIPKDKLYVTVFEGDEEIPRDEETASVWES-LGIPKD-R-I 152 (594)
T ss_pred Cc--chhHHHhhccccHhhhhHHHHHHHHHHHhccchhcCCCHHHeEEEEeCCCCCCCCCHHHHHHHHH-cCCCHH-H-e
Confidence 23 555444432222222 0111111122 454322 2 4
Q ss_pred eEe--cCCCCC-C-ccccccccceeeec------------------Ceeeeeeehhh---hcCC--cccCcceeeehhhh
Q 001485 182 RFV--EDNWES-P-VLGAWGLGWEIWMD------------------GMEITQFTYFQ---QAGS--LQLSPVSVEITYGL 234 (1070)
Q Consensus 182 rfv--ed~we~-p-~lga~glgwevw~~------------------gmeitqftyfq---q~gg--~~~~~~~~eitygl 234 (1070)
-+. +|||=. - --|--|==-||-.| ++||==.-+.| ..+| .+|.--++---+||
T Consensus 153 ~~~~~~dNfW~~~G~~GPCGPcsEI~~d~g~~~~~~~~~~~~~~~r~lEiwNlVFmq~~~~~~g~~~~Lp~k~IDTGmGL 232 (594)
T PRK01584 153 FYLSREHNWWGPVGETGPCGPDTEIFVDTGKPKCSVNCRPTCSCGKYFEIWNNVFMQYNKDEDGNYEELKRKCVDTGMGI 232 (594)
T ss_pred eeCCCCCCcccccCCCcCCCCceEEEEecCCcccccccCCCCCCCceEEEeeeeeeeeeecCCCccccCCCCceeCCcCH
Confidence 444 677641 1 12444433777777 37774443333 2344 34444556667999
Q ss_pred HHHHHHHhCCCceeee
Q 001485 235 ERILMLLQGVDHFKKI 250 (1070)
Q Consensus 235 er~~m~~q~~~~~~~~ 250 (1070)
|||++.|||+.|+||.
T Consensus 233 ERl~~vlqg~~s~ydt 248 (594)
T PRK01584 233 ERTIAFLQGKSSVYDT 248 (594)
T ss_pred HHHHHHHcCCCCccch
Confidence 9999999999999998
No 17
>TIGR03683 A-tRNA_syn_arch alanyl-tRNA synthetase. This family of alanyl-tRNA synthetases is limited to the archaea, and is a subset of those sequences identified by the model pfam07973 covering the second additional domain (SAD) of alanyl and threonyl tRNA synthetases.
Probab=96.38 E-value=0.021 Score=73.13 Aligned_cols=176 Identities=21% Similarity=0.363 Sum_probs=120.3
Q ss_pred CcchHHHHHHHHHHHHhhcCceeeecccccc---------ccc--cCCHHHHhhhcCCCcceEEeecCCCCCCCCCCCCC
Q 001485 72 SVPTFQQAIQRLQEYWASVGCSVMQCSNTEV---------GAG--TMNPLTFLRVLGPEPWNVAYVEPSIRPDDSRYGEN 140 (1070)
Q Consensus 72 ~~~~~q~~i~~l~~~w~~~gc~~~q~~~~e~---------gag--t~~p~t~~~~l~~~~~~~ayv~p~~rp~d~ryg~n 140 (1070)
..||-.+|-.+--+|..++|+.+..+|..=- .|| .|-|.-....-.|..=+++=.|||.|=.|= ||
T Consensus 54 ~~~~~~eiR~~fl~FF~~~gH~~v~s~pvvprw~dDllft~Agm~~Fkp~f~~G~~~pp~~r~~~sQkCiR~nDl---dn 130 (902)
T TIGR03683 54 KKYTLDEMREAFLSFFEKHGHTRIKRYPVVARWRDDVYLTIASIADFQPWVTSGLVPPPANPLVISQPCIRLNDI---DN 130 (902)
T ss_pred CCCCHHHHHHHHHHHHHhCCCEEeCCcCcCcCCCCCeeEeecchhhhhHhhcCCCCCCCCCCceecccccccccc---cc
Confidence 4489999999999999999999999885432 555 344443224444433568999999999773 33
Q ss_pred Cccc-cceeeeEEEecCCCcc----------hHHHHHHHHHhcCCCCCCCceeEecCCCCCCccccccccceeeecCeee
Q 001485 141 PNRL-QRHTQFQVILKPDPGN----------SQDLFIRSLSALGIDVTEHDIRFVEDNWESPVLGAWGLGWEIWMDGMEI 209 (1070)
Q Consensus 141 pnrl-~~~~q~qvi~kp~p~~----------~q~lyl~sl~~~gi~~~~hdirfved~we~p~lga~glgwevw~~gmei 209 (1070)
==|= .||+=|..+=-=|-+. ..++=-+=|+.|||+ .+.|.|.|+=|+-= |--|==-||-..|+||
T Consensus 131 VG~t~rH~TfFEMlGn~sFg~~~~~dYfK~EaI~~a~e~l~~lgi~--~~~i~~~enfW~~G--GpcGPcsEi~~~glEi 206 (902)
T TIGR03683 131 VGRTGRHLTCFEMMAHHAFNYPDKEIYWKDETVEYCFEFLEELGID--PEEITYKESPWEGG--GNAGPCFEVIVGGLEL 206 (902)
T ss_pred ccCCCCcchhhhhccceeeCCCCcccCcHHHHHHHHHHHHHHcCCC--HHHeeecCCccCCC--CCCCCceeeeeCcEee
Confidence 2222 5677666655444442 222223345669984 45688866556544 8888889999999999
Q ss_pred eeeehhhhc----------CCc--ccCcceeeehhhhHHHHHHHhCCCceeeeeeCC
Q 001485 210 TQFTYFQQA----------GSL--QLSPVSVEITYGLERILMLLQGVDHFKKIQYAD 254 (1070)
Q Consensus 210 tqftyfqq~----------gg~--~~~~~~~eitygler~~m~~q~~~~~~~~~~~~ 254 (1070)
-=.-+.|.- +|. ++.--++---||||||++.+||+.++||..+.+
T Consensus 207 wnlVFmq~~~~~~~~~~~~~g~~~~Lp~k~VDTG~GLER~~~v~qg~~t~ydt~f~~ 263 (902)
T TIGR03683 207 ATLVFMQYEEDKEGEIEIKGGRYSEMPLKIVDTGYGLERFVWASQGTPTAYDAIFPE 263 (902)
T ss_pred eeeeeeeeccccccccccCCCeeeeCCCCceecCCCHHHHHHHHcCCCchHHHHHHH
Confidence 766666532 331 233344566699999999999999999997765
No 18
>PRK00252 alaS alanyl-tRNA synthetase; Reviewed
Probab=96.26 E-value=0.015 Score=74.22 Aligned_cols=164 Identities=24% Similarity=0.305 Sum_probs=110.2
Q ss_pred cchHHHHHHHHHHHHhhcCceeeecccc-----------ccccccCCHHHHhhhcCCCcceEEeecCCCCCCC----C--
Q 001485 73 VPTFQQAIQRLQEYWASVGCSVMQCSNT-----------EVGAGTMNPLTFLRVLGPEPWNVAYVEPSIRPDD----S-- 135 (1070)
Q Consensus 73 ~~~~q~~i~~l~~~w~~~gc~~~q~~~~-----------e~gagt~~p~t~~~~l~~~~~~~ayv~p~~rp~d----~-- 135 (1070)
+||-.+|-.+--+|..++|+.+.-+|.. --|--+|-|. |+...-|.-=+++=.|+|.|=.| |
T Consensus 1 ~~~~~eiR~~fl~fF~~~~H~~v~s~~lvp~~d~~llf~nAGm~~fk~~-f~g~~~p~~~r~~~~QkCiR~nDld~VG~t 79 (865)
T PRK00252 1 MMTSAEIRQKFLDFFESKGHTVVPSASLVPKNDPTLLFTNAGMVQFKDY-FLGQEKPPYPRATTSQKCIRTNDLENVGYT 79 (865)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEecCCCcCCCCCCCeeeeccchhhhhHH-hcCCCCCCCCCcccccccccccchhhccCC
Confidence 4788899999999999999999987753 2344466676 66444343346999999999876 2
Q ss_pred -C--------------------------------CCCCCcccc-ceeeeEEEecCCCcchHHHHHHHHHhcCCCCCCCce
Q 001485 136 -R--------------------------------YGENPNRLQ-RHTQFQVILKPDPGNSQDLFIRSLSALGIDVTEHDI 181 (1070)
Q Consensus 136 -r--------------------------------yg~npnrl~-~~~q~qvi~kp~p~~~q~lyl~sl~~~gi~~~~hdi 181 (1070)
| ||-+|+||+ .|| + +| +|-|===++.+|+++. |=|
T Consensus 80 ~rHhTfFEMlGn~sfgdYfK~eai~~awe~lt~~~~i~~~~l~vt~~-------~--~D-~e~~~iW~~~~g~~~~-~i~ 148 (865)
T PRK00252 80 ARHHTFFEMLGNFSFGDYFKEEAIEWAWELLTSVLGLPKEKLYVTVY-------E--DD-DEAYDIWKKEIGVPPE-RII 148 (865)
T ss_pred CCchHHHHHhcccchhhhhHHHHHHHHHHHHHHHhCCCHHHEEEEEc-------C--CC-HHHHHHHHhccCCCHH-Hee
Confidence 2 677788877 343 1 11 2333333446677654 447
Q ss_pred eE-ecCCCCC-Cccccccccceeeec-------------------Ceee-----eeeehhhhcCC--cccCcceeeehhh
Q 001485 182 RF-VEDNWES-PVLGAWGLGWEIWMD-------------------GMEI-----TQFTYFQQAGS--LQLSPVSVEITYG 233 (1070)
Q Consensus 182 rf-ved~we~-p~lga~glgwevw~~-------------------gmei-----tqftyfqq~gg--~~~~~~~~eityg 233 (1070)
+| .+|||=+ =--|--|==-||-.| +.|| +||.+- .+| .+|.--++---+|
T Consensus 149 ~~~~~dNfW~~G~~GpcGPcsEi~~d~g~~~~~~~~~~~~~~~~~~lEiwNlVF~q~~~~--~~g~~~~Lp~~~iDTG~G 226 (865)
T PRK00252 149 RIGKKDNFWSMGDTGPCGPCSEIFYDRGEEYWGGPPGSPEEDGDRYIEIWNLVFMQFNRD--EDGNLTPLPKKNIDTGMG 226 (865)
T ss_pred cCCccCCccccCCCcCCCCCeEEEEecCcccCCCCCCCCcCCCCcEEEEeeeeeEeeeec--CCCceeeCCCCeeecCcC
Confidence 76 6777543 223566666777776 3555 555542 344 3444456677799
Q ss_pred hHHHHHHHhCCCceeee
Q 001485 234 LERILMLLQGVDHFKKI 250 (1070)
Q Consensus 234 ler~~m~~q~~~~~~~~ 250 (1070)
||||++.|||+.+.||.
T Consensus 227 lER~~~ilq~~~snydt 243 (865)
T PRK00252 227 LERIAAVLQGVHSNYET 243 (865)
T ss_pred HHHHHHHHcCCCCcchh
Confidence 99999999999999997
No 19
>TIGR00295 conserved hypothetical protein TIGR00295. This set of orthologs is narrowly defined, comprising proteins found in three Archaea but not in Pyrococcus horikoshii. The closest homologs are other archaeal proteins that appear to be represent distinct orthologous clusters.
Probab=96.16 E-value=0.039 Score=57.17 Aligned_cols=100 Identities=16% Similarity=0.113 Sum_probs=77.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHhCCC--hhHHHHHHHHHHhhhhccccchhhcChhhhHHHHHHHHHhCCCCHHHHHHHHhh
Q 001485 739 GTMLDKTMRVQNMVRKLSLDLGIN--EDMLQIVQEAASLAMSDLATSVVMEFTSLAGVMACHYALRDGYSQQIAEALLEI 816 (1070)
Q Consensus 739 GSl~DK~~RI~~La~~La~~l~~~--~~~~~~~~RAA~L~KaDL~T~MV~EFPELQGiMG~~YA~~~GE~~~VA~AI~Eh 816 (1070)
.+.++-+.|+..+|..||..++.+ ..+.+.+..||.|--. ..-.. .....+.+|..+.+..|-+++++.+|.-|
T Consensus 12 ~~~~~Hs~~Va~~A~~ia~~~~~~~~~~d~~~l~~aaLLHDI--GK~~~--~~~~H~~~G~~iL~~~g~~~~i~~iI~~H 87 (164)
T TIGR00295 12 ESVRRHCLAVARVAMELAENIRKKGHEVDMDLVLKGALLHDI--GRART--HGFEHFVKGAEILRKEGVDEKIVRIAERH 87 (164)
T ss_pred ccHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHhcC--CcccC--CCCCHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 457889999999999999998732 1234678889988644 33222 22458999999999999999999999988
Q ss_pred cCCCCC-----------CCCCCCcchhhHHHHhhhHH
Q 001485 817 NLPRFS-----------GDVLPKTDVGTVLAVADRLD 842 (1070)
Q Consensus 817 YlPr~a-----------gD~LP~t~~G~iLSlADKlD 842 (1070)
.-+... ++..|.|..+.+|++||++-
T Consensus 88 ~~~g~p~~~~~~~~l~~~~~~p~t~ea~IV~~AD~l~ 124 (164)
T TIGR00295 88 FGAGINAEEASKLGLPPKDYMPETLEEKIVAHADNLI 124 (164)
T ss_pred hCCCCchhhHhhcCCCcccCCCCCHHHHHHHHHHHhc
Confidence 765332 45578999999999999984
No 20
>PRK12705 hypothetical protein; Provisional
Probab=95.99 E-value=0.031 Score=67.38 Aligned_cols=101 Identities=17% Similarity=0.283 Sum_probs=80.2
Q ss_pred ccccCCCC-HHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHhhhhccccchhhcChhhhHHHHHHHHHhCCCCHHHHH
Q 001485 733 LFHEKLGT-MLDKTMRVQNMVRKLSLDLGINEDMLQIVQEAASLAMSDLATSVVMEFTSLAGVMACHYALRDGYSQQIAE 811 (1070)
Q Consensus 733 vF~~kLGS-l~DK~~RI~~La~~La~~l~~~~~~~~~~~RAA~L~KaDL~T~MV~EFPELQGiMG~~YA~~~GE~~~VA~ 811 (1070)
-|...-|. +++.+.++..+|..||..+|++. +.+.+||.|- |+.-.+-.|...-...+|...++.-|+++.|+.
T Consensus 315 ~~R~sygqnvl~HSl~VA~lA~~LA~~lGld~---d~a~~AGLLH--DIGK~ie~e~~~~H~~iGaeLlkk~~~p~~Vv~ 389 (508)
T PRK12705 315 YFRTSYGQNVLSHSLEVAHLAGIIAAEIGLDP---ALAKRAGLLH--DIGKSIDRESDGNHVEIGAELARKFNEPDEVIN 389 (508)
T ss_pred hhcccCCchHHHHHHHHHHHHHHHHHHcCcCH---HHHHHHHHHH--HcCCcchhhhcccHHHHHHHHHHhcCCCHHHHH
Confidence 35544543 89999999999999999999886 4567899885 443333445555678999999999999999999
Q ss_pred HHHhhcCCCCCCCCCCCcchhhHHHHhhhHHH
Q 001485 812 ALLEINLPRFSGDVLPKTDVGTVLAVADRLDT 843 (1070)
Q Consensus 812 AI~EhYlPr~agD~LP~t~~G~iLSlADKlDt 843 (1070)
+|..|.-|.. |++..+.++++||.++.
T Consensus 390 aI~~HHe~~~-----~~~~~a~IVaiADaLSa 416 (508)
T PRK12705 390 AIASHHNKVN-----PETVYSVLVQIADALSA 416 (508)
T ss_pred HHHHhCCCCC-----CCCHHHHHHHHHHHHcC
Confidence 9999997753 55789999999996543
No 21
>PRK12704 phosphodiesterase; Provisional
Probab=95.63 E-value=0.059 Score=65.40 Aligned_cols=101 Identities=16% Similarity=0.209 Sum_probs=83.4
Q ss_pred ccccCCC-CHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHhhhhccccchhhcChhhhHHHHHHHHHhCCCCHHHHH
Q 001485 733 LFHEKLG-TMLDKTMRVQNMVRKLSLDLGINEDMLQIVQEAASLAMSDLATSVVMEFTSLAGVMACHYALRDGYSQQIAE 811 (1070)
Q Consensus 733 vF~~kLG-Sl~DK~~RI~~La~~La~~l~~~~~~~~~~~RAA~L~KaDL~T~MV~EFPELQGiMG~~YA~~~GE~~~VA~ 811 (1070)
-|....| ++++.+.|+..+|..||..+|++. +.+.+||.|.-...... .|++.-..+.|...++..|+++.|+.
T Consensus 327 ~~R~~~~qn~l~Hs~~Va~lA~~lA~~lgld~---~~a~~AgLLHDIGK~~~--~e~~~~H~~iGa~il~~~~~~~~v~~ 401 (520)
T PRK12704 327 KYRTSYGQNVLQHSIEVAHLAGLMAAELGLDV---KLAKRAGLLHDIGKALD--HEVEGSHVEIGAELAKKYKESPVVIN 401 (520)
T ss_pred hccCcCCCcHhHHHHHHHHHHHHHHHHhCcCH---HHHHHHHHHHccCcCcc--ccccCCHHHHHHHHHHHcCCCHHHHH
Confidence 4444443 489999999999999999999976 45789999987666532 46777899999999999999999999
Q ss_pred HHHhhcCCCCCCCCCCCcchhhHHHHhhhHHH
Q 001485 812 ALLEINLPRFSGDVLPKTDVGTVLAVADRLDT 843 (1070)
Q Consensus 812 AI~EhYlPr~agD~LP~t~~G~iLSlADKlDt 843 (1070)
+|.-|--+ .-|.+..+.+|.+||.|+.
T Consensus 402 aI~~HHe~-----~~~~~~~a~IV~~ADaLsa 428 (520)
T PRK12704 402 AIAAHHGD-----EEPTSIEAVLVAAADAISA 428 (520)
T ss_pred HHHHcCCC-----CCCCCHHHHHHHHHHHHhC
Confidence 99999853 4578899999999997664
No 22
>PF01966 HD: HD domain; InterPro: IPR006674 This domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity []. These enzymes appear to be involved in the nucleic acid metabolism, signal transduction and possibly other functions in bacteria, archaea and eukaryotes. The fact that all the highly conserved residues in the HD superfamily are histidines or aspartates suggests that coordination of divalent cations is essential for the activity of these proteins [].; GO: 0008081 phosphoric diester hydrolase activity, 0046872 metal ion binding; PDB: 2CQZ_A 2Q14_C 3CCG_A 2PAU_A 2PAQ_B 2PAR_B 3BG2_A 3NQW_A 2QGS_B 2DQB_D ....
Probab=95.15 E-value=0.05 Score=50.71 Aligned_cols=101 Identities=21% Similarity=0.178 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHhhhhccccchh-hc-----C--hhhhHHHHHHHHHhCCCCH-----H
Q 001485 742 LDKTMRVQNMVRKLSLDLGINEDMLQIVQEAASLAMSDLATSVV-ME-----F--TSLAGVMACHYALRDGYSQ-----Q 808 (1070)
Q Consensus 742 ~DK~~RI~~La~~La~~l~~~~~~~~~~~RAA~L~KaDL~T~MV-~E-----F--PELQGiMG~~YA~~~GE~~-----~ 808 (1070)
++-+.|+..++..|+..++. ..+...+..||.|=-.-...... .| + -...+.+|...++..+... .
T Consensus 2 ~~Hs~~V~~~a~~l~~~~~~-~~~~~~l~~aaLlHDiGk~~~~~~~~~~~~~~~~~~~H~~~g~~~~~~~~~~~~~~~~~ 80 (122)
T PF01966_consen 2 FEHSLRVAELAERLADRLGL-EEDRELLRIAALLHDIGKIPTPDFIEKKPEERGKFYRHEEIGAEILKEFLKELGLPIEI 80 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHTH-HHHHHHHHHHHHHTTTTHHSTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHCHHH
T ss_pred hhHHHHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhcCCCCCchHHHHhHhhhchhhhhHHHHHHHHHHhhhhcchHHHH
Confidence 67889999999999998875 44556778888874333332221 11 1 1356889998888888877 9
Q ss_pred HHHHHHhhcCCCC------CCCCCCCcchhhHHHHhhhHHH
Q 001485 809 IAEALLEINLPRF------SGDVLPKTDVGTVLAVADRLDT 843 (1070)
Q Consensus 809 VA~AI~EhYlPr~------agD~LP~t~~G~iLSlADKlDt 843 (1070)
|+.+|..|-.|.. ....-|.+..+.+|.+||++|.
T Consensus 81 i~~~i~~H~~~~~~~~~~~~~~~~~~~~~~~iv~~aD~l~a 121 (122)
T PF01966_consen 81 IANAIRYHHGPWNGEGKPKEEDYEPISLEARIVKLADRLDA 121 (122)
T ss_dssp HHHHHHHTTTHHTSHHCHHCHSCSTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccccccccccccCCCCCCHHHHHHHHHHHHhC
Confidence 9999999998876 3567888999999999999996
No 23
>TIGR00488 putative HD superfamily hydrolase of NAD metabolism. The function of this protein family is unknown. Members of this family of uncharacterized proteins from the Mycoplasmas are longer at the amino end, fused to a region of nicotinamide nucleotide adenylyltransferase, an NAD salvage biosynthesis enzyme. Members are putative metal-dependent phosphohydrolases for NAD metabolism.
Probab=95.12 E-value=0.12 Score=53.06 Aligned_cols=99 Identities=13% Similarity=0.101 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHhhhhccc-c----------------chhhcChhhhHHHHHHHHHhC
Q 001485 741 MLDKTMRVQNMVRKLSLDLGINEDMLQIVQEAASLAMSDLA-T----------------SVVMEFTSLAGVMACHYALRD 803 (1070)
Q Consensus 741 l~DK~~RI~~La~~La~~l~~~~~~~~~~~RAA~L~KaDL~-T----------------~MV~EFPELQGiMG~~YA~~~ 803 (1070)
.+..+.++..+|..||..++.+. +.+..|+.|--.... + .-..|+.-+.+.+|.+++.+-
T Consensus 9 r~~Hsl~Va~~a~~lA~~~~~d~---e~a~~AGLLHDIGk~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~vGa~ll~~w 85 (158)
T TIGR00488 9 RYQHCLGVGQTAKQLAEANKLDS---KKAEIAGAYHDLAKFLPKEQLKQIAKREKMPAHLLYPSPKLLHAYVGAYILKRE 85 (158)
T ss_pred HHHHHHHHHHHHHHHHHHhCcCH---HHHHHHHHHHHHhccCCHHHHHHHHHHcCCCchhhcccccccHHHHHHHHHHHH
Confidence 46678899999999999988765 346667765432211 0 111235557999999999874
Q ss_pred -CC-CHHHHHHHHhhcCCCCCCCCCCCcchhhHHHHhhhHHHHHHh
Q 001485 804 -GY-SQQIAEALLEINLPRFSGDVLPKTDVGTVLAVADRLDTLVGL 847 (1070)
Q Consensus 804 -GE-~~~VA~AI~EhYlPr~agD~LP~t~~G~iLSlADKlDtLvG~ 847 (1070)
|. +++|..||.-|-.|. -+.+..+.+|.+||+++...|.
T Consensus 86 ~~~~~~~i~~aI~~H~~~~-----~~~~~l~~iV~lAD~i~~~~~~ 126 (158)
T TIGR00488 86 FGVQDEDILDAIRNHTSGP-----PGMSLLDMIIYVADKLEPNRGA 126 (158)
T ss_pred hCCCcHHHHHHHHHhCCCC-----CCCCHHHHHHHhHHHHhhcccc
Confidence 66 889999999999883 2346789999999999988773
No 24
>PLN02900 alanyl-tRNA synthetase
Probab=95.02 E-value=0.072 Score=68.56 Aligned_cols=168 Identities=25% Similarity=0.328 Sum_probs=98.6
Q ss_pred cchHHHHHHHHHHHHhhcCceeeecccc---------ccccccCCHHHHhhhcCCCcc--------eEEeecCCCCC---
Q 001485 73 VPTFQQAIQRLQEYWASVGCSVMQCSNT---------EVGAGTMNPLTFLRVLGPEPW--------NVAYVEPSIRP--- 132 (1070)
Q Consensus 73 ~~~~q~~i~~l~~~w~~~gc~~~q~~~~---------e~gagt~~p~t~~~~l~~~~~--------~~ayv~p~~rp--- 132 (1070)
.||-.+|=.+--+|..++||.++.+|.. -+.||--.-.-++ ||.++. +++=+|+|.|=
T Consensus 10 ~~~~~eiR~~Fl~FF~~~gH~~v~s~slvp~~dptllftnAGm~~Fk~~f--~G~~~p~~~~~~~~R~~~~QkCiR~gGK 87 (936)
T PLN02900 10 EWPGDRIRRTFLSFFESKGHTFLPSSPLVPVDDPTLLFTNAGMNQFKPIF--LGTADPNTPLRKLPRATNTQKCIRAGGK 87 (936)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEeCCCCcCCCCCCCeeeeecchhhhhhhh--cCCCCCCCCCCCCCceeeecccccCCCC
Confidence 5889999999999999999999887643 2355522222233 465544 68999999998
Q ss_pred -CCC-CCCCCCccccceeeeEEEecCCCcchHHHHHHH---------H-HhcCCCCCC----------------------
Q 001485 133 -DDS-RYGENPNRLQRHTQFQVILKPDPGNSQDLFIRS---------L-SALGIDVTE---------------------- 178 (1070)
Q Consensus 133 -~d~-ryg~npnrl~~~~q~qvi~kp~p~~~q~lyl~s---------l-~~~gi~~~~---------------------- 178 (1070)
.|= .=|-. -.||+=|..+=-=|-+| |-+- | +.|||+++.
T Consensus 88 HnDlenVG~t---~rHhTfFEMlGnfSfgd----YfK~eaI~~awe~lT~~l~i~~~~l~vTv~~~D~~~~~d~Ea~~iW 160 (936)
T PLN02900 88 HNDLDDVGKD---TYHHTFFEMLGNWSFGD----YFKKEAIGWAWELLTKVYGLPADRLYATYFGGDEKQAPDDEARAIW 160 (936)
T ss_pred CCCHhhccCC---CCchHHHHhhhccchhh----hhHHHHHHHHHHHHHHhcCCCHHHEEEEEeCCCCCcCCCHHHHHHH
Confidence 541 01111 02344343332222222 2210 1 124444433
Q ss_pred -------CceeE-ecCC-CCCCccccccccceeeec-----------------Ceee-----eeeehhhhcCCc-ccCcc
Q 001485 179 -------HDIRF-VEDN-WESPVLGAWGLGWEIWMD-----------------GMEI-----TQFTYFQQAGSL-QLSPV 226 (1070)
Q Consensus 179 -------hdirf-ved~-we~p~lga~glgwevw~~-----------------gmei-----tqftyfqq~gg~-~~~~~ 226 (1070)
|=+|| .+|| |+-=--|--|==-||-.| ++|| +||.+- .-|.+ +|.--
T Consensus 161 ~~~~~~~rI~~~~~~dNfW~~G~tGpcGPcsEi~yD~g~~~~~~~~~~~~~~r~lEiwNlVFmq~~~~-~~g~~~~Lp~~ 239 (936)
T PLN02900 161 LDYLPEERVLPFGCKDNFWEMGDTGPCGPCSEIHYDRIGERDAADLVNNDDPRFIEIWNLVFIQFNRE-ADGSLKPLPAK 239 (936)
T ss_pred HHhCCHHHeecCCcccCCccCCCCcCCCCCeEEEEecCCccCccccCCCCCCCEEEEeeeeeeeeeec-CCCceeeCCCC
Confidence 22333 2455 433224666666777776 5777 455431 12322 24444
Q ss_pred eeeehhhhHHHHHHHhCCCceeee
Q 001485 227 SVEITYGLERILMLLQGVDHFKKI 250 (1070)
Q Consensus 227 ~~eitygler~~m~~q~~~~~~~~ 250 (1070)
++---+||||||+.|||+.|.||.
T Consensus 240 ~IDTGmGLERl~~vlqg~~snydt 263 (936)
T PLN02900 240 HVDTGMGLERLASILQNKPSNYDT 263 (936)
T ss_pred eeecCcCHHHHHHHHcCCCCcchh
Confidence 566679999999999999999997
No 25
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=94.98 E-value=0.12 Score=62.71 Aligned_cols=191 Identities=18% Similarity=0.272 Sum_probs=125.0
Q ss_pred HHHHHHhcCCeecCCCchHHHhhccccCCceeecccCccCCCCcHHHHHHHHHhCcceeEEECCCCCccccEEE--EEcC
Q 001485 611 SNALAKSVNGRIIFEESLLNEVVNLVEAPVPVLGEFEDSFLELPEDLLTVVMKKHQKYFALTDDKGRLLPYFIA--VANG 688 (1070)
Q Consensus 611 i~~lA~~~g~~v~~de~LLeEVt~LVE~P~~l~G~Fde~FL~LP~EVLitvMk~HQKYFpv~d~~G~Llp~FI~--VsN~ 688 (1070)
|..+..-.|..+++|+. -..+++.+||+ +=.||=..+|..= + .||++-|.-|- |...
T Consensus 227 ir~~e~~tgvd~iiddt----------p~~v~ls~fdp----~rreia~~~l~~l-----i--~dgrihp~riee~~~~~ 285 (514)
T TIGR03319 227 IRALETLTGVDLIIDDT----------PEAVILSGFDP----VRREIARMALEKL-----I--QDGRIHPARIEEMVEKA 285 (514)
T ss_pred HHHHHHHhCceEEEcCC----------CCeEEecCCch----HHHHHHHHHHHHH-----H--HcCCCCHHHHHHHHHHH
Confidence 45566667877777765 23667888887 4455555555431 1 25888885441 1110
Q ss_pred CC--CchhhhchhhhHhhhhcccchhhHHhhhcCChHHHHhcccCcccccCCCC-HHHHHHHHHHHHHHHHHHhCCChhH
Q 001485 689 AI--NEMVVRKGNEAVLRARYEDAKFFYEMDTRKKFADFQGQLKGILFHEKLGT-MLDKTMRVQNMVRKLSLDLGINEDM 765 (1070)
Q Consensus 689 ~~--~~~~V~~GNErVLrARL~DA~FF~~~DlK~~Le~~~~kLk~VvF~~kLGS-l~DK~~RI~~La~~La~~l~~~~~~ 765 (1070)
.. +......|-+.|...=+.+- ...+ +.-|..+-|....|. ++..+.++..+|..||..+|++.
T Consensus 286 ~~~~~~~i~~~g~~~~~~~~~~~~--------~~~~---~~~l~~l~~r~~~~~~~l~Hs~~VA~lA~~LA~~lgld~-- 352 (514)
T TIGR03319 286 TKEVDNAIREEGEQAAFDLGVHGL--------HPEL---IKLLGRLKFRTSYGQNVLQHSIEVAHLAGIMAAELGEDV-- 352 (514)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcC--------CHHH---HHHHHHhhccccCCccHHHHHHHHHHHHHHHHHHhCcCH--
Confidence 00 11222345555544333221 1112 233344556666654 89999999999999999999876
Q ss_pred HHHHHHHHHhhhhccccchhhcChhhhHHHHHHHHHhCCCCHHHHHHHHhhcCCCCCCCCCCCcchhhHHHHhhhHHH
Q 001485 766 LQIVQEAASLAMSDLATSVVMEFTSLAGVMACHYALRDGYSQQIAEALLEINLPRFSGDVLPKTDVGTVLAVADRLDT 843 (1070)
Q Consensus 766 ~~~~~RAA~L~KaDL~T~MV~EFPELQGiMG~~YA~~~GE~~~VA~AI~EhYlPr~agD~LP~t~~G~iLSlADKlDt 843 (1070)
+.+.+||.|.-.--+ +-.|...-..++|..+++.-|.++.|+.+|.-|--| .-|.+..+.+|.+||.|+.
T Consensus 353 -~~a~~AGLLHDIGK~--~~~e~~~~H~~~Ga~ll~~~~~~~~V~~aI~~HH~~-----~~~~~~~a~IV~~AD~lsa 422 (514)
T TIGR03319 353 -KLAKRAGLLHDIGKA--VDHEVEGSHVEIGAELAKKYKESPEVVNAIAAHHGD-----VEPTSIEAVLVAAADALSA 422 (514)
T ss_pred -HHHHHHHHHHhcCcc--cchhhcccHHHHHHHHHHHcCCCHHHHHHHHHhCCC-----CCCCCHHHHHHHHHHHhcC
Confidence 456789998755333 223444457899999999999999999999999865 3578999999999999764
No 26
>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated
Probab=94.64 E-value=0.15 Score=58.66 Aligned_cols=95 Identities=12% Similarity=0.127 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHhhhhccc---------------cchhhcChhhhHHHHHHHHHhC-C
Q 001485 741 MLDKTMRVQNMVRKLSLDLGINEDMLQIVQEAASLAMSDLA---------------TSVVMEFTSLAGVMACHYALRD-G 804 (1070)
Q Consensus 741 l~DK~~RI~~La~~La~~l~~~~~~~~~~~RAA~L~KaDL~---------------T~MV~EFPELQGiMG~~YA~~~-G 804 (1070)
.+..+.|+..+|..||..+|++. +.+..||.|--.--. +.--.++....+..|.++++.. |
T Consensus 197 ~~~HSl~VA~~A~~LA~~~g~d~---~~a~~AGLLHDIGK~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~Ga~ll~~~~~ 273 (342)
T PRK07152 197 RYKHCLRVAQLAAELAKKNNLDP---KKAYYAGLYHDITKEWDEEKHRKFLKKYLKDVKNLPWYVLHQYVGALWLKHVYG 273 (342)
T ss_pred HHHHHHHHHHHHHHHHHHhCcCH---HHHHHHHHHHHhhccCCHHHHHHHHHhcCCchhhcchHHHhHHHHHHHHHHHcC
Confidence 67789999999999999999875 456777766432221 1111223345899999999876 8
Q ss_pred CC-HHHHHHHHhhcCCCCCCCCCCCcchhhHHHHhhhHHH
Q 001485 805 YS-QQIAEALLEINLPRFSGDVLPKTDVGTVLAVADRLDT 843 (1070)
Q Consensus 805 E~-~~VA~AI~EhYlPr~agD~LP~t~~G~iLSlADKlDt 843 (1070)
.+ ++|+.||..|..|.. +.+..+.+|.+||+++.
T Consensus 274 ~p~~~i~~aI~~Hh~~~~-----~~~~l~~iV~lAD~l~~ 308 (342)
T PRK07152 274 IDDEEILNAIRNHTSLAE-----EMSTLDKIVYVADKIEP 308 (342)
T ss_pred CCcHHHHHHHHhccCCCC-----CcCHHHHHHHhhhhccc
Confidence 76 799999999998753 45788999999999885
No 27
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=94.59 E-value=0.27 Score=60.26 Aligned_cols=109 Identities=23% Similarity=0.284 Sum_probs=80.0
Q ss_pred cCCChhHHHHHHhhhhhhccCCCCCCc--cCCCcccCCCHHHHHHHHHHHHHhhhcCCC---CChHHHHHHHhhhchHHH
Q 001485 954 KGQLFPKVVEAYSRPTRIVRGKDVDTA--LEVDETAFETIEEKALWTVYLSAKNKIHPG---INVDDFIEISSELVQPLE 1028 (1070)
Q Consensus 954 ~~~~f~~l~~a~KRv~NIlkk~~~~~~--~~vd~~lf~~~~Ek~L~~~~~~i~~~~~~~---~~~~~~~~~l~~L~~~Id 1028 (1070)
+.....-+.-++.|+..|++|...... ...+.. +.++.|+.|...+..+...+..+ .........+.+|....+
T Consensus 442 ~~n~~~yiqYa~aR~~SIlrK~~~~~~~~~~~~~~-~~~~~e~~Ll~~l~~~~~~v~~a~~~~~p~~~~~~l~~La~~~N 520 (566)
T TIGR00456 442 EGNTAPYIQYAHARICSILRKADIDGEKLIADDFS-LLEEKEKELLKLLLQFPDVLEEAAEELEPHVLTNYLYELASLFS 520 (566)
T ss_pred CCCCchhHHHHHHHHHHHHHhcccccccccccccC-CCCHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 556667889999999999997532110 011223 34888999988887776554432 345556777889999999
Q ss_pred hhhccceecCC-cHHHHHHHHHHHHHHHHhhhhccc
Q 001485 1029 DFFNHVFVMVE-EERIRKNRLALLKKIADLPKGIVD 1063 (1070)
Q Consensus 1029 ~FFD~VmVm~e-D~~IR~NRLaLL~~i~~l~~~iaD 1063 (1070)
.|+++.-|..+ |+.+++.||.|...++..+....+
T Consensus 521 ~yy~~~~Vl~~~~~~~~~~RL~L~~a~~~vl~~gL~ 556 (566)
T TIGR00456 521 SFYKACPVLDAENENLAAARLALLKATRQTLKNGLQ 556 (566)
T ss_pred HHHhcCccCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888874 688999999999999888776544
No 28
>PRK12703 tRNA 2'-O-methylase; Reviewed
Probab=94.43 E-value=0.25 Score=57.05 Aligned_cols=96 Identities=13% Similarity=0.111 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHhhhhccccchhhcChhhhHHHHHHHHHhCCCCHHHHHHHHhhc---
Q 001485 741 MLDKTMRVQNMVRKLSLDLGINEDMLQIVQEAASLAMSDLATSVVMEFTSLAGVMACHYALRDGYSQQIAEALLEIN--- 817 (1070)
Q Consensus 741 l~DK~~RI~~La~~La~~l~~~~~~~~~~~RAA~L~KaDL~T~MV~EFPELQGiMG~~YA~~~GE~~~VA~AI~EhY--- 817 (1070)
+++-+.|+..+|..||..++++. +.+..||.|--.+-.- ....-.++.|..++...|.+++++.+|+.|-
T Consensus 188 l~~Hs~rVa~lA~~LA~~~~~D~---~ll~aAALLHDIGK~k----~~~~~H~~~Ga~iL~e~G~~e~i~~iIe~H~g~G 260 (339)
T PRK12703 188 LIRHVKTVYKLAMRIADCINADR---RLVAAGALLHDIGRTK----TNGIDHAVAGAEILRKENIDDRVVSIVERHIGAG 260 (339)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCH---HHHHHHHHHHhccccc----ccCCCHHHHHHHHHHHCCCCHHHHHHHHHHhccC
Confidence 68999999999999999998764 5577888886554332 1122488899999999999999999998876
Q ss_pred CCCC--------CCCCCCCcchhhHHHHhhhHHH
Q 001485 818 LPRF--------SGDVLPKTDVGTVLAVADRLDT 843 (1070)
Q Consensus 818 lPr~--------agD~LP~t~~G~iLSlADKlDt 843 (1070)
.|.. ..+..|.|..+.+|+.|||++.
T Consensus 261 ~~~~~~~~~gL~~~~~~P~TLEakIV~dADrL~~ 294 (339)
T PRK12703 261 ITSEEAQKLGLPVKDYVPETIEEMIVAHADNLFA 294 (339)
T ss_pred CCcchhhccCCccccCCCCCHHHHHHHHHHHHhc
Confidence 2321 1245788999999999999943
No 29
>smart00471 HDc Metal dependent phosphohydrolases with conserved 'HD' motif. Includes eukaryotic cyclic nucleotide phosphodiesterases (PDEc). This profile/HMM does not detect HD homologues in bacterial glycine aminoacyl-tRNA synthetases (beta subunit).
Probab=94.26 E-value=0.61 Score=42.71 Aligned_cols=104 Identities=20% Similarity=0.219 Sum_probs=75.8
Q ss_pred CHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHhhhhccccchhhc-------ChhhhHHHHHHHHHhCCCCHHHHHH
Q 001485 740 TMLDKTMRVQNMVRKLSLDLGINEDMLQIVQEAASLAMSDLATSVVME-------FTSLAGVMACHYALRDGYSQQIAEA 812 (1070)
Q Consensus 740 Sl~DK~~RI~~La~~La~~l~~~~~~~~~~~RAA~L~KaDL~T~MV~E-------FPELQGiMG~~YA~~~GE~~~VA~A 812 (1070)
+.++-+.++..++..++...+. .+...+.-||.|. |+....... ...-++.+|..+++..+.++.++..
T Consensus 4 ~~~~H~~~v~~~~~~l~~~~~~--~~~~~~~~a~LlH--Dig~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~ 79 (124)
T smart00471 4 HVFEHSLRVAQLAAALAEELGL--LDIELLLLAALLH--DIGKPGTPDSFLVKTSVLEDHHFIGAEILLEEEEPRILEEI 79 (124)
T ss_pred hHHHHHHHHHHHHHHHHHHcCh--HHHHHHHHHHHHH--cccCccCCHHHhcCccHHHHhHHHHHHHHHhCCCCHHHHHH
Confidence 5788899999999999998874 1234566666663 222222211 2467889999999998999999887
Q ss_pred ----HHhhcCCCCCCCCCCCcchhhHHHHhhhHHHHHHh
Q 001485 813 ----LLEINLPRFSGDVLPKTDVGTVLAVADRLDTLVGL 847 (1070)
Q Consensus 813 ----I~EhYlPr~agD~LP~t~~G~iLSlADKlDtLvG~ 847 (1070)
|..|..+......-+.+..+.++.+||++|.....
T Consensus 80 ~~~~i~~h~~~~~~~~~~~~~~~~~il~~aD~~~~~~~~ 118 (124)
T smart00471 80 LATAILSHHERPDGLRGEPITLEARIVKVADRLDALRRD 118 (124)
T ss_pred HhhHHHHhccccCCCCCCcCCHHHHHHHHHHHHHHHhcC
Confidence 88888776543444567899999999999997643
No 30
>COG0013 AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=94.03 E-value=0.15 Score=64.90 Aligned_cols=176 Identities=25% Similarity=0.340 Sum_probs=117.6
Q ss_pred cchHHHHHHHHHHHHhhcCceeeecccc---------ccccc--cCCHHHHhhhcCCCcceEEeecCCCCCCCCCCCCCC
Q 001485 73 VPTFQQAIQRLQEYWASVGCSVMQCSNT---------EVGAG--TMNPLTFLRVLGPEPWNVAYVEPSIRPDDSRYGENP 141 (1070)
Q Consensus 73 ~~~~q~~i~~l~~~w~~~gc~~~q~~~~---------e~gag--t~~p~t~~~~l~~~~~~~ayv~p~~rp~d~ryg~np 141 (1070)
++|--+|=.+--+|+.++|=.+.-+|.. -+.|| +|-|. |+..-.|.+-+++=.|||.|-.|= ||=
T Consensus 5 ~~t~~EiR~~FL~FF~~kgH~~v~s~slVP~nDptLLftnAGm~~FK~~-f~g~v~p~~~r~~~sQkcIR~NDi---eNV 80 (879)
T COG0013 5 KLTTNEIRQKFLDFFEKKGHTVVPSSPLVPRNDPTLLFTNAGMVQFKPY-FTGGVTPPANRAVTSQKCIRTNDI---DNV 80 (879)
T ss_pred cCCHHHHHHHHHHHHHHCCCeecCCCCcCCCCCCCeEEeecccccchhh-hcCCCCCCCCCeeccccccccCch---hhc
Confidence 4788999999999999999999887643 23444 55553 333346777899999999999873 333
Q ss_pred cccc-ceeeeEEEecCCCcc--------------------------------hHHHHHHHHHhcCCCCCCCceeE-ecCC
Q 001485 142 NRLQ-RHTQFQVILKPDPGN--------------------------------SQDLFIRSLSALGIDVTEHDIRF-VEDN 187 (1070)
Q Consensus 142 nrl~-~~~q~qvi~kp~p~~--------------------------------~q~lyl~sl~~~gi~~~~hdirf-ved~ 187 (1070)
-+-- ||+=|..+--=|-++ =.|-|=.+.+.+||++ +|=||+ -+||
T Consensus 81 G~T~RHhTfFEMLGNfSFGdYFKeeAI~~AwEflT~~lgl~~ekL~vtvy~~Ddea~~~W~~~~gip~-~rIir~~~~dN 159 (879)
T COG0013 81 GYTARHHTFFEMLGNFSFGDYFKEEAIEFAWEFLTKVLGLPKEKLYVTVYEDDDEAYNEWEKIIGIPP-ERIIRIGASDN 159 (879)
T ss_pred CccccchhHHHhhhcCchhHHHHHHHHHHHHHHHHhhcCCCHHHEEEEEecCchHHHHHHHhhcCCCH-HHeeecCcCCC
Confidence 3332 444454433222221 1233445555666533 343444 4788
Q ss_pred CCCCccccccccceeeecC-------------------eeeeeeehhh--hc-CC---cccCcceeeehhhhHHHHHHHh
Q 001485 188 WESPVLGAWGLGWEIWMDG-------------------MEITQFTYFQ--QA-GS---LQLSPVSVEITYGLERILMLLQ 242 (1070)
Q Consensus 188 we~p~lga~glgwevw~~g-------------------meitqftyfq--q~-gg---~~~~~~~~eitygler~~m~~q 242 (1070)
|-+.-.|--|==-||-.|+ +||-=.-+.| +. |+ .+|.--++-=-||||||+-.||
T Consensus 160 fW~~G~GPcGPcsEI~yD~G~~~~~~~~~~~~~d~dR~lEiwNLVFmQfnr~~~~g~~~~Lp~k~IDTGmGLERi~~vlQ 239 (879)
T COG0013 160 FWEMGDGPCGPCSEIFYDRGEEIGGGPPGSPDEDGDRYLEIWNLVFMQYNRDPGDGNYTPLPKKNIDTGMGLERIAAVLQ 239 (879)
T ss_pred CCCCCCcCCCCceEEEEcCCcccCCCCCCCcCCCCCceEEEeeeeehhhccCCCCCCcccCCCCCcccCccHHHHHHHHc
Confidence 8776667777779999999 9986554444 33 44 3444456666799999999999
Q ss_pred CCCceeeeeeC
Q 001485 243 GVDHFKKIQYA 253 (1070)
Q Consensus 243 ~~~~~~~~~~~ 253 (1070)
++.++||+..=
T Consensus 240 ~~~tnyd~dlf 250 (879)
T COG0013 240 GVPTNYDTDLF 250 (879)
T ss_pred CCCcchhhhhh
Confidence 99999998654
No 31
>PRK00106 hypothetical protein; Provisional
Probab=93.89 E-value=0.28 Score=59.81 Aligned_cols=190 Identities=16% Similarity=0.216 Sum_probs=123.0
Q ss_pred HHHHHHhcCCeecCCCchHHHhhccccCCceeecccCccCCCCcHHHHHHHHHhCcceeEEECCCCCccccEE--EEEcC
Q 001485 611 SNALAKSVNGRIIFEESLLNEVVNLVEAPVPVLGEFEDSFLELPEDLLTVVMKKHQKYFALTDDKGRLLPYFI--AVANG 688 (1070)
Q Consensus 611 i~~lA~~~g~~v~~de~LLeEVt~LVE~P~~l~G~Fde~FL~LP~EVLitvMk~HQKYFpv~d~~G~Llp~FI--~VsN~ 688 (1070)
|..+..-.|..+++|+. -..+++-+||+= =.||=..+|..= =.||++-|.-| .|...
T Consensus 248 ir~~E~~tGvdliiddt----------p~~v~lS~fdpv----RReiAr~~le~L-------i~dgrIhp~rIEe~v~k~ 306 (535)
T PRK00106 248 IRTLESLTGIDVIIDDT----------PEVVVLSGFDPI----RREIARMTLESL-------IKDGRIHPARIEELVEKN 306 (535)
T ss_pred HHHHHHHhCceEEEcCC----------CCeEEEeCCChH----HHHHHHHHHHHH-------HHcCCcCHHHHHHHHHHH
Confidence 44555666777776653 134667788873 445544444331 12588777654 11111
Q ss_pred CC--CchhhhchhhhHhhhhcccchhhHHhhhcCChHHHHhcccCcccccCCC-CHHHHHHHHHHHHHHHHHHhCCChhH
Q 001485 689 AI--NEMVVRKGNEAVLRARYEDAKFFYEMDTRKKFADFQGQLKGILFHEKLG-TMLDKTMRVQNMVRKLSLDLGINEDM 765 (1070)
Q Consensus 689 ~~--~~~~V~~GNErVLrARL~DA~FF~~~DlK~~Le~~~~kLk~VvF~~kLG-Sl~DK~~RI~~La~~La~~l~~~~~~ 765 (1070)
.. +......|-+.|...=.. + ....+ +.-|..+-|....| .+++.+-.+..+|..||..+|++.
T Consensus 307 ~~e~~~~i~~~Ge~a~~~lg~~----~----~~~e~---~~~lg~l~~r~sy~qnl~~HSv~VA~lA~~lA~~lgld~-- 373 (535)
T PRK00106 307 RLEMDNRIREYGEAAAYEIGAP----N----LHPDL---IKIMGRLQFRTSYGQNVLRHSVEVGKLAGILAGELGENV-- 373 (535)
T ss_pred HHHHHHHHHHHHHHHHHHcCCC----C----CCHHH---HHHHHHHhhhccCCCcHHHHHHHHHHHHHHHHHHhCCCH--
Confidence 11 122223455555442211 1 11222 33344445555555 489999999999999999999864
Q ss_pred HHHHHHHHHhhhhccccchhhcChhhhHHHHHHHHHhCCCCHHHHHHHHhhcCCCCCCCCCCCcchhhHHHHhhhHH
Q 001485 766 LQIVQEAASLAMSDLATSVVMEFTSLAGVMACHYALRDGYSQQIAEALLEINLPRFSGDVLPKTDVGTVLAVADRLD 842 (1070)
Q Consensus 766 ~~~~~RAA~L~KaDL~T~MV~EFPELQGiMG~~YA~~~GE~~~VA~AI~EhYlPr~agD~LP~t~~G~iLSlADKlD 842 (1070)
+.+.+|+.|---.-+ +-.|...-.+.+|..++++-|+++.|+.||..|--|.. |.|..+.+|.+||.|+
T Consensus 374 -e~a~~AGLLHDIGK~--v~~e~~g~Ha~iGa~ll~~~~~~~~v~~aI~~HH~~~~-----~~s~~a~IV~~AD~ls 442 (535)
T PRK00106 374 -ALARRAGFLHDMGKA--IDREVEGSHVEIGMEFARKYKEHPVVVNTIASHHGDVE-----PESVIAVIVAAADALS 442 (535)
T ss_pred -HHHHHHHHHHhccCc--cCccccCChHHHHHHHHHHcCCCHHHHHHHHHhCCCCC-----CCChHHHHHHHHHHhc
Confidence 568899999755444 33566667999999999999999999999999987643 5688999999999774
No 32
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=93.68 E-value=0.16 Score=62.20 Aligned_cols=105 Identities=14% Similarity=0.138 Sum_probs=77.1
Q ss_pred CChhHHHHHHhhhhhhccCCCCCCccCCCcccCCCHHHHHHHHHHHHHhhhcCCC---CChHHHHHHHhhhchHHHhhhc
Q 001485 956 QLFPKVVEAYSRPTRIVRGKDVDTALEVDETAFETIEEKALWTVYLSAKNKIHPG---INVDDFIEISSELVQPLEDFFN 1032 (1070)
Q Consensus 956 ~~f~~l~~a~KRv~NIlkk~~~~~~~~vd~~lf~~~~Ek~L~~~~~~i~~~~~~~---~~~~~~~~~l~~L~~~Id~FFD 1032 (1070)
....-+.=++-|+..|++|.+... ...+-. |.++.|.+|-..+..+...+... .........+.+|....+.||+
T Consensus 445 ~t~pYiQYa~AR~~SIlrka~~~~-~~~~~~-l~~~~E~~Ll~~L~~~~~~v~~a~e~~ep~~~~~yl~~LA~~fN~fy~ 522 (562)
T PRK12451 445 ETGPYVQYTHARACSILRKESVEF-ETCTFA-LKDDYSWSVVKLLNKFPQVIEAAFNKNEPSVISKYVLDVAQSFNKYYG 522 (562)
T ss_pred CccHHHHHHHHHHHHHHHhcCCCc-cccccC-CCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 445567778889999998753211 112322 67999999998887776555432 3456667778899999999999
Q ss_pred cceecCCcHHHHHHHHHHHHHHHHhhhhccc
Q 001485 1033 HVFVMVEEERIRKNRLALLKKIADLPKGIVD 1063 (1070)
Q Consensus 1033 ~VmVm~eD~~IR~NRLaLL~~i~~l~~~iaD 1063 (1070)
..-|+. ++++|+.||.|...++..+....+
T Consensus 523 ~~~Vl~-~~~~~~~RL~L~~a~~~vL~~gL~ 552 (562)
T PRK12451 523 NVRILE-ESAEKDSRLALVYAVTVVLKEGLR 552 (562)
T ss_pred hCCCCC-CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 988885 567899999999999887776544
No 33
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=93.64 E-value=0.32 Score=59.87 Aligned_cols=115 Identities=23% Similarity=0.295 Sum_probs=81.8
Q ss_pred HHHHHhhcCCChhHHHHHHhhhhhhccCCCCCCccCCCc---ccCCCHHHHHHHHHHHHHhhhcCCC---CChHHHHHHH
Q 001485 947 YKMEALSKGQLFPKVVEAYSRPTRIVRGKDVDTALEVDE---TAFETIEEKALWTVYLSAKNKIHPG---INVDDFIEIS 1020 (1070)
Q Consensus 947 ~aL~~f~~~~~f~~l~~a~KRv~NIlkk~~~~~~~~vd~---~lf~~~~Ek~L~~~~~~i~~~~~~~---~~~~~~~~~l 1020 (1070)
+....|.+ ....=+.=|+.|+..|++|.+... ..... ..+.++.|++|...+.....-+..+ ..-......|
T Consensus 446 d~~lsfeg-Nt~pYvQYA~ARi~SIlrka~e~~-~~~~~~~~~~l~~~~E~~L~~~L~~fp~vl~~aa~~~~Ph~la~YL 523 (577)
T COG0018 446 DKALSFEG-NTAPYVQYAHARICSILRKAGEDE-LDLSTEADALLTELEERELVKKLLEFPEVLEEAAEELEPHRLANYL 523 (577)
T ss_pred HHHHhccC-CCchhHHHHHHHHHHHHHhccccc-cccccccchhccChHHHHHHHHHHHhHHHHHHHHHhcCchHHHHHH
Confidence 33444544 666778889999999999864321 11211 4789999999999887775433321 1222334456
Q ss_pred hhhchHHHhhhccceecCCcHH-HHHHHHHHHHHHHHhhhhccc
Q 001485 1021 SELVQPLEDFFNHVFVMVEEER-IRKNRLALLKKIADLPKGIVD 1063 (1070)
Q Consensus 1021 ~~L~~~Id~FFD~VmVm~eD~~-IR~NRLaLL~~i~~l~~~iaD 1063 (1070)
.+|....+.|++++-|+.++.. +|..||+|...++..+..-.+
T Consensus 524 ~~LA~~Fn~fY~~~~Vl~~~~~~~~~aRL~L~~a~~~vL~ngL~ 567 (577)
T COG0018 524 YDLAGSFNSFYNACPVLGAENEELRAARLALVKATRQVLKNGLD 567 (577)
T ss_pred HHHHHHHHHHHhhCCcCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888999999999999987555 999999999999888776554
No 34
>cd00673 AlaRS_core Alanyl-tRNA synthetase (AlaRS) class II core catalytic domain. AlaRS is a homodimer. It is responsible for the attachment of alanine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its predicted structure and the presence of three characteristic sequence motifs.
Probab=93.27 E-value=1.1 Score=49.50 Aligned_cols=157 Identities=25% Similarity=0.335 Sum_probs=91.5
Q ss_pred HHHHHHHHHHhhcCceeeecccc---------ccccccCCHH-HHhhhcCCCc---ceEEeecCCCCCCC----CCCCCC
Q 001485 78 QAIQRLQEYWASVGCSVMQCSNT---------EVGAGTMNPL-TFLRVLGPEP---WNVAYVEPSIRPDD----SRYGEN 140 (1070)
Q Consensus 78 ~~i~~l~~~w~~~gc~~~q~~~~---------e~gagt~~p~-t~~~~l~~~~---~~~ayv~p~~rp~d----~ryg~n 140 (1070)
+|..+--+|..++|+.++.++.. -+.|| |+|- -++ +|.++ =+++=+|+|.|=.| |+-
T Consensus 3 eiR~~fl~FF~~kgH~~v~s~slvp~dDptllFtnAG-M~~Fkp~f--~G~~~p~~~r~~~~QkCiR~~DienVG~t--- 76 (232)
T cd00673 3 EIRETFLSFFEKKGHTRVPSSPVVPRDDPTLLFTNAG-MNQFKPIF--LGEVPPPANRLVNSQKCIRAGDIDNVGKT--- 76 (232)
T ss_pred HHHHHHHHHHHhCCCEEeCCCCcCCCCCCchheeccc-hhhhhHHh--cCCCCCCCCceeeeeeceecCChhhcccc---
Confidence 56777888999999998876532 22454 3332 233 56544 37899999999653 311
Q ss_pred CccccceeeeEEEecCCCcc--------------------------------hHHHHHHHHHhcCCCCCCCceeE-ecCC
Q 001485 141 PNRLQRHTQFQVILKPDPGN--------------------------------SQDLFIRSLSALGIDVTEHDIRF-VEDN 187 (1070)
Q Consensus 141 pnrl~~~~q~qvi~kp~p~~--------------------------------~q~lyl~sl~~~gi~~~~hdirf-ved~ 187 (1070)
-.||+=|+.+=-=|-++ -.|.|-.=.+.+||+ ..|=+|+ .+||
T Consensus 77 ---~rHhTfFEMLGNfSFgdYFK~eaI~~awe~LT~~l~l~~~rl~vTv~~~dde~~~~w~~~~g~~-~~~i~~~~~~dN 152 (232)
T cd00673 77 ---GRHHTFFEMLGNFSFGDYFKEEAIAFAWELLTEVLGLPKDRLYVSVFEGDDEEEAIWWWKIGLP-GIRIERIGFKDN 152 (232)
T ss_pred ---ccchhhhhhhcccchhhhhHHHHHHHHHHHHHhhcCCCccceEEEEeCCCHHHHHHHHHhhCCC-HHHeeeCCccCC
Confidence 12344444332222221 134444444566763 3444554 2577
Q ss_pred CCCC-ccccccccceeeecC-----------------eeeeeeehhh---hcCC--cccCcceeeehhhhHHHHHHHhCC
Q 001485 188 WESP-VLGAWGLGWEIWMDG-----------------MEITQFTYFQ---QAGS--LQLSPVSVEITYGLERILMLLQGV 244 (1070)
Q Consensus 188 we~p-~lga~glgwevw~~g-----------------meitqftyfq---q~gg--~~~~~~~~eitygler~~m~~q~~ 244 (1070)
|=+. --|-=|===|+-.|+ +||=-.-+.| ...| .+|.--++---+||||||+.||||
T Consensus 153 fW~~G~~GPCGPcsEI~yd~g~~~~~~~~~~~~~~r~lEIWNlVFmqy~r~~~g~l~pLp~k~IDTGmGlERla~vlQg~ 232 (232)
T cd00673 153 FWEMGGNGPCGPCSEIFYDRGEERDAASLPNEDDDRYLEIWNLVFMQYNRDADGTYRPLPKKIVDTGMGLERLVWVLQGV 232 (232)
T ss_pred CCCCCCCcCCCCCEEEEEccCCCcCccccccCCCCCEEEEeeeeeeeeeccCCCCCccCCCCeeeCCcCHHHHHHHHcCC
Confidence 5433 234445557888887 7775544444 3333 244445677779999999999986
No 35
>COG1418 Predicted HD superfamily hydrolase [General function prediction only]
Probab=91.22 E-value=0.51 Score=51.50 Aligned_cols=116 Identities=19% Similarity=0.215 Sum_probs=90.6
Q ss_pred HHhcccCcccccCCCCHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHhhhhccccchhhcChhhhHHHHHHHHHhCC
Q 001485 725 FQGQLKGILFHEKLGTMLDKTMRVQNMVRKLSLDLGINEDMLQIVQEAASLAMSDLATSVVMEFTSLAGVMACHYALRDG 804 (1070)
Q Consensus 725 ~~~kLk~VvF~~kLGSl~DK~~RI~~La~~La~~l~~~~~~~~~~~RAA~L~KaDL~T~MV~EFPELQGiMG~~YA~~~G 804 (1070)
....+....|+.-=++.++-+.|+..||..||...|.+. ..+.+||.|- |+......+--.=+-+.|..-|+.-+
T Consensus 21 ~~~~~~~~~~~~~~~~~l~H~~~Va~lA~~Ia~~~g~D~---~l~~~aaLLH--DIg~~~~~~~~~~h~~~gae~a~~~~ 95 (222)
T COG1418 21 LVKLLGRLKFRTYGQHVLEHSLRVAYLAYRIAEEEGVDP---DLALRAALLH--DIGKAIDHEPGGSHAEIGAEIARKFL 95 (222)
T ss_pred HHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHcCCCH---HHHHHHHHHH--hhccccccCCccchHHHHHHHHHHHc
Confidence 344444555665446899999999999999999999875 6789999984 66666655532227788999999999
Q ss_pred CC----------HHHHHHHHhhcCCCCCCCCCCCcchhhHHHHhhhHHHHH
Q 001485 805 YS----------QQIAEALLEINLPRFSGDVLPKTDVGTVLAVADRLDTLV 845 (1070)
Q Consensus 805 E~----------~~VA~AI~EhYlPr~agD~LP~t~~G~iLSlADKlDtLv 845 (1070)
++ +.|+.+|..|--=....|.+|.+..|..+.=||++|.+.
T Consensus 96 ~~~~~~~~~~~~~~~~~~i~~~s~~~~~~d~~~a~~~g~~~~dad~l~~~~ 146 (222)
T COG1418 96 EDPVVINAIEAHHGVEEIISRHSFLVAAADALSAARPGARLQDADRLDARG 146 (222)
T ss_pred ccccccchHHHhccccchhhHHHHHhhhhhcccccCCccccccHHHHHHHH
Confidence 99 667888888776666667999999999999999888775
No 36
>cd00077 HDc Metal dependent phosphohydrolases with conserved 'HD' motif
Probab=89.29 E-value=8.2 Score=35.85 Aligned_cols=108 Identities=18% Similarity=0.143 Sum_probs=72.9
Q ss_pred CHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHhhhhccccc------hhhcChhhhHHHHHHHHH------hCCCCH
Q 001485 740 TMLDKTMRVQNMVRKLSLDLGINEDMLQIVQEAASLAMSDLATS------VVMEFTSLAGVMACHYAL------RDGYSQ 807 (1070)
Q Consensus 740 Sl~DK~~RI~~La~~La~~l~~~~~~~~~~~RAA~L~KaDL~T~------MV~EFPELQGiMG~~YA~------~~GE~~ 807 (1070)
+.+..+.++..++..++...+.+..+...+..||.|...-.... .-..+.......|..+++ ..+..+
T Consensus 2 ~~~~Hs~~v~~~~~~~~~~~~~~~~~~~~l~~aaLlHDig~~~~~~~~~~~~~~~~~~h~~~g~~~~~~~~~~~~~~~~~ 81 (145)
T cd00077 2 HRFEHSLRVAQLARRLAEELGLSEEDIELLRLAALLHDIGKPGTPDAITEEESELEKDHAIVGAEILRELLLEEVIKLID 81 (145)
T ss_pred chHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHhcCCccCccccCHHHHHHHHhhHHHHHHHHHHhhhcccccccH
Confidence 57788899999999999887654444456778887754433211 011134556667777774 667777
Q ss_pred HHHHHHH-hhcCCCCCCC------CCCCcchhhHHHHhhhHHHHHHh
Q 001485 808 QIAEALL-EINLPRFSGD------VLPKTDVGTVLAVADRLDTLVGL 847 (1070)
Q Consensus 808 ~VA~AI~-EhYlPr~agD------~LP~t~~G~iLSlADKlDtLvG~ 847 (1070)
+++.++. -|+.+..... ..|.+..+.+|.+||++|+....
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~AD~~~~~~~~ 128 (145)
T cd00077 82 ELILAVDASHHERLDGLGYPDGLKGEEITLEARIVKLADRLDALRRD 128 (145)
T ss_pred HHHHHHHHHcccCCCCCCCCCCCCcccCCHHHHHHHHHHHHHHHhcC
Confidence 8888887 5553322211 22568999999999999998875
No 37
>TIGR00277 HDIG uncharacterized domain HDIG. This domain is found in a few known nucleotidyltransferes and in a large number of uncharacterized proteins. It contains four widely separated His residues, the second of which is part of an invariant dipeptide His-Asp in a region matched approximately by the motif HDIG.
Probab=88.89 E-value=2.3 Score=37.10 Aligned_cols=75 Identities=15% Similarity=0.221 Sum_probs=56.4
Q ss_pred CHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHhhhhccccchhhcChhhhHHHHHHHHHhCCCCHHHHHHHHhhc
Q 001485 740 TMLDKTMRVQNMVRKLSLDLGINEDMLQIVQEAASLAMSDLATSVVMEFTSLAGVMACHYALRDGYSQQIAEALLEIN 817 (1070)
Q Consensus 740 Sl~DK~~RI~~La~~La~~l~~~~~~~~~~~RAA~L~KaDL~T~MV~EFPELQGiMG~~YA~~~GE~~~VA~AI~EhY 817 (1070)
..++-+.|+..++..||...+++. +.+.-||.|.-......--....--+..+|...++.-|.+++|+.+|..|-
T Consensus 4 ~~~~H~~~v~~~a~~la~~~~~~~---~~l~~AalLHDiG~~~~~~~~~~~~H~~~g~~~l~~~~~~~~~~~~I~~Hh 78 (80)
T TIGR00277 4 NVLQHSLEVAKLAEALARELGLDV---ELARRGALLHDIGKPITREGVIFESHAVVGAEIARKYGEPLEVIDIIAEHH 78 (80)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCH---HHHHHHHHHHccCCcccchHHHHHchHHHHHHHHHHcCCCHHHHHHHHHHc
Confidence 568889999999999999998865 346778888765433211000123467889999999999999999999884
No 38
>TIGR00344 alaS alanine--tRNA ligase. The model describes alanine--tRNA ligase. This enzyme catalyzes the reaction (tRNAala + L-alanine + ATP = L-alanyl-tRNAala + pyrophosphate + AMP).
Probab=88.59 E-value=1.3 Score=57.10 Aligned_cols=159 Identities=26% Similarity=0.433 Sum_probs=91.8
Q ss_pred HHHHHHHhhcCceeeeccc---------cccccccCCH-HH-HhhhcCCCcceEEeecCCCCCCC-------CC------
Q 001485 81 QRLQEYWASVGCSVMQCSN---------TEVGAGTMNP-LT-FLRVLGPEPWNVAYVEPSIRPDD-------SR------ 136 (1070)
Q Consensus 81 ~~l~~~w~~~gc~~~q~~~---------~e~gagt~~p-~t-~~~~l~~~~~~~ayv~p~~rp~d-------~r------ 136 (1070)
.+--+|..++|+.++.+|. .-+.|| ||| .- |+..--|.-=+++=.|+|.|=.| +|
T Consensus 4 ~~fl~fF~~~gH~~v~s~slvp~~dptllf~nAG-m~~fk~~f~G~~~p~~~r~~~~QkCiR~nDld~VG~t~rHhTfFE 82 (851)
T TIGR00344 4 QTFLDFFKEKGHQVIPSASLVPRNDPTLLLTNAG-MAQFKPIFTGIVKPPSNRLVNAQPCIRLNDIENVGRTARHHTFFE 82 (851)
T ss_pred HHHHHHHHhCCCEEcCCCCcCCCCCCCeeeeccc-hhhhhHHhcCCCCCCCCCcccccccccccchhhhcCCCcchhhHH
Confidence 4455677788888776553 233444 222 22 22222232256778888888765 22
Q ss_pred --------------------------CCCCCccccc-eeeeEEEecCCCcchHHHHHHHHHhcCCCCCCCceeEe-cCC-
Q 001485 137 --------------------------YGENPNRLQR-HTQFQVILKPDPGNSQDLFIRSLSALGIDVTEHDIRFV-EDN- 187 (1070)
Q Consensus 137 --------------------------yg~npnrl~~-~~q~qvi~kp~p~~~q~lyl~sl~~~gi~~~~hdirfv-ed~- 187 (1070)
||-+|+||+- || +. | +|-|===++ +||+. +|=+||= +||
T Consensus 83 MlGnfSFgdYfK~eai~~awe~lT~~~~i~~~rl~vTv~-------~~--D-~ea~~iW~~-~g~~~-~~i~~~~~~dNf 150 (851)
T TIGR00344 83 MLGNFSFGDYFKEEAIAFAWELLTSVLGLDKERLYVTVY-------ED--D-EEAYEIWEK-HGIPA-ERIIRCGDKDNF 150 (851)
T ss_pred hhcccchhhhhHHHHHHHHHHHHhhhcCCChHHEEEEEc-------CC--C-HHHHHHHHh-cCCCH-HHcccCCccCCc
Confidence 7777788764 22 22 2 243433344 77744 3446661 355
Q ss_pred CCCCccccccccceeeec------C--------------eeeeeeehhh---hcCC--cccCcceeeehhhhHHHHHHHh
Q 001485 188 WESPVLGAWGLGWEIWMD------G--------------MEITQFTYFQ---QAGS--LQLSPVSVEITYGLERILMLLQ 242 (1070)
Q Consensus 188 we~p~lga~glgwevw~~------g--------------meitqftyfq---q~gg--~~~~~~~~eitygler~~m~~q 242 (1070)
|+-=- |--|==-||-.| | +||==.-+.| .-+| .+|.--++---+|||||++.||
T Consensus 151 W~~G~-GpcGPcsEi~yD~g~~~~~~~~~~~~~~~~~r~lEiwNlVFmq~~~~~~g~~~~Lp~~~IDTGmGLERl~~vlq 229 (851)
T TIGR00344 151 WDMGD-GPCGPCTEIYYDRGEFVGGKPGEPEFFEENDRYVEVWNLVFMQFNRDPDGNYTPLPKKNIDTGMGLERFVAVLQ 229 (851)
T ss_pred CCCCC-cCCccCeEEEEecCcccCCCCCcccccCCCCcEEEEeeeeeEeeeecCCCceeeCCCCeeecCcCHHHHHHHHc
Confidence 54332 666666777744 2 5654333222 3344 3444456677799999999999
Q ss_pred CCCceeee-eeC
Q 001485 243 GVDHFKKI-QYA 253 (1070)
Q Consensus 243 ~~~~~~~~-~~~ 253 (1070)
|+.+.||. .+.
T Consensus 230 g~~snydtD~f~ 241 (851)
T TIGR00344 230 GVPTNYDTDIFL 241 (851)
T ss_pred CCCCcchhhhHH
Confidence 99999998 444
No 39
>TIGR03401 cyanamide_fam HD domain protein, cyanamide hydratase family. Members of this protein family are known, so far, in the Ascomycota, a branch of the Fungi, and contain an HD domain (pfam01966), found typically in various metal-dependent phosphohydrolases. The only characterized member of this family, from the soil fungus Myrothecium verrucaria, is cyanamide hydratase (EC 4.2.1.69), a zinc-containing homohexamer that adds water to the fertilizer cyanamide (NCNH2), a nitrile compound, to produce urea (NH2-CO-NH2). Homologs are likely to be nitrile hydratases.
Probab=88.47 E-value=3 Score=45.94 Aligned_cols=99 Identities=17% Similarity=0.192 Sum_probs=68.8
Q ss_pred CHHHHHHHHHHHHHHHHHH----hCCChhHHHHHHHHHHhhhhccccchhh----cChhhhHHHHHHHHHhC-CCCH---
Q 001485 740 TMLDKTMRVQNMVRKLSLD----LGINEDMLQIVQEAASLAMSDLATSVVM----EFTSLAGVMACHYALRD-GYSQ--- 807 (1070)
Q Consensus 740 Sl~DK~~RI~~La~~La~~----l~~~~~~~~~~~RAA~L~KaDL~T~MV~----EFPELQGiMG~~YA~~~-GE~~--- 807 (1070)
-.++-+.|+-.++..|+.. ++++. +.+.-||.|--.-++-.-.. -|-+.-+...+...+.. |-++
T Consensus 55 ~~~~Hs~RV~~~a~~ia~~e~~~~~~D~---evl~lAALLHDIG~~~~~~~~~~~~fe~~ga~~A~~~L~~~~G~~~~~~ 131 (228)
T TIGR03401 55 ETYNHSLRVYYYGLAIARDQFPEWDLSD---ETWFLTCLLHDIGTTDENMTATKMSFEFYGGILALDVLKEQTGANQDQA 131 (228)
T ss_pred hhhHHHHHHHHHHHHHHHHhccccCCCH---HHHHHHHHHHhhccccccCCcccCCHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 6789999999999999974 35554 56778888865433211111 23344455666666666 7665
Q ss_pred -HHHHHHHhhcCCCCCCCCCCCcchhhHHHHhhhHHHH
Q 001485 808 -QIAEALLEINLPRFSGDVLPKTDVGTVLAVADRLDTL 844 (1070)
Q Consensus 808 -~VA~AI~EhYlPr~agD~LP~t~~G~iLSlADKlDtL 844 (1070)
.|+.||.-|-.|.. .-+.+..|.+|..||++|.+
T Consensus 132 ~~V~~aI~~H~~~~~---~~~~~~e~~lvq~Ad~lDa~ 166 (228)
T TIGR03401 132 EAVAEAIIRHQDLGV---DGTITTLGQLLQLATIFDNV 166 (228)
T ss_pred HHHHHHHHHHhCCCC---CCCcCHHHHHHHHHHHHhHc
Confidence 67889999955544 44558899999999999975
No 40
>PRK01611 argS arginyl-tRNA synthetase; Reviewed
Probab=87.86 E-value=0.86 Score=55.20 Aligned_cols=103 Identities=25% Similarity=0.329 Sum_probs=71.3
Q ss_pred hHHHHHHhhhhhhccCCCCCCccCCCcccCCCHHHHHHHHHHHHHhhhcCCC---CChHHHHHHHhhhchHHHhhhccce
Q 001485 959 PKVVEAYSRPTRIVRGKDVDTALEVDETAFETIEEKALWTVYLSAKNKIHPG---INVDDFIEISSELVQPLEDFFNHVF 1035 (1070)
Q Consensus 959 ~~l~~a~KRv~NIlkk~~~~~~~~vd~~lf~~~~Ek~L~~~~~~i~~~~~~~---~~~~~~~~~l~~L~~~Id~FFD~Vm 1035 (1070)
.-+.=++.|+..|+++.+.. ........+.++.|+.|...+..+...+..+ .+-......+.+|....+.|+++.-
T Consensus 391 ~yvqYa~aR~~sil~k~~~~-~~~~~~~~l~~~~e~~Ll~~L~~~~~~v~~a~~~~~p~~l~~yl~~la~~f~~fY~~~~ 469 (507)
T PRK01611 391 PYVQYAHARICSILRKAAEA-GIDLLLALLTEEEEKELIKKLAEFPEVVESAAEELEPHRIANYLYELAGAFHSFYNRVL 469 (507)
T ss_pred HHHHHHHHHHHHHHHhhhcc-CccccccccCCHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHCC
Confidence 34455777999998864211 0111113477899999998887776555432 2234445567888899999999877
Q ss_pred ecCCcHH-HHHHHHHHHHHHHHhhhhccc
Q 001485 1036 VMVEEER-IRKNRLALLKKIADLPKGIVD 1063 (1070)
Q Consensus 1036 Vm~eD~~-IR~NRLaLL~~i~~l~~~iaD 1063 (1070)
..+|++ +++.||.|...++..+....+
T Consensus 470 -l~~~~~~~~~~Rl~L~~a~~~vl~~~l~ 497 (507)
T PRK01611 470 -LKDEEEELRNARLALVKATAQVLKNGLD 497 (507)
T ss_pred -CCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 656766 999999999999888776554
No 41
>PLN02286 arginine-tRNA ligase
Probab=86.73 E-value=3.9 Score=50.63 Aligned_cols=108 Identities=19% Similarity=0.210 Sum_probs=72.6
Q ss_pred cCCChhHHHHHHhhhhhhccCCCCCC-c-cCCCcccCCCHHHHHHHHHHHHHhhhcCCC---CChHHHHHHHhhhchHHH
Q 001485 954 KGQLFPKVVEAYSRPTRIVRGKDVDT-A-LEVDETAFETIEEKALWTVYLSAKNKIHPG---INVDDFIEISSELVQPLE 1028 (1070)
Q Consensus 954 ~~~~f~~l~~a~KRv~NIlkk~~~~~-~-~~vd~~lf~~~~Ek~L~~~~~~i~~~~~~~---~~~~~~~~~l~~L~~~Id 1028 (1070)
+.....=|.=|+.|+..|++|.+... . ...++..+.++.|++|-..+......+..+ ..-......|..|....+
T Consensus 454 ~g~t~pYlQYahAR~~SIlrKa~~~~~~~~~~~~~~l~~~~E~~L~~~l~~fp~vv~~a~~~~~P~~l~~Yl~~LA~~F~ 533 (576)
T PLN02286 454 KGNTAVYLLYAHARICSIIRKSGKDIDELKKTGKIVLDHPDERALGLHLLQFPEVVEEACTDLLPNRLCEYLYNLSEKFT 533 (576)
T ss_pred cCCChHHHHHHHHHHHHHHHhccCccccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHH
Confidence 34444567888999999999753210 0 011223478999999998887765444321 122223445688899999
Q ss_pred hhhccceecCCcHHHHHHHHHHHHHHHHhhhhccc
Q 001485 1029 DFFNHVFVMVEEERIRKNRLALLKKIADLPKGIVD 1063 (1070)
Q Consensus 1029 ~FFD~VmVm~eD~~IR~NRLaLL~~i~~l~~~iaD 1063 (1070)
.|+++.-|..+++. +.||.|...++..+..-.+
T Consensus 534 ~fY~~~~Vl~~~~~--~aRL~L~~a~~~vL~~gL~ 566 (576)
T PLN02286 534 KFYSNCKVNGSEEE--TSRLLLCEATAIVMRKCFH 566 (576)
T ss_pred HHHhcCccCCCCch--hHHHHHHHHHHHHHHHHHH
Confidence 99988888875444 8899999999887766544
No 42
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional
Probab=85.63 E-value=3.8 Score=49.80 Aligned_cols=119 Identities=14% Similarity=0.230 Sum_probs=76.7
Q ss_pred CcceEEeecCCCCCCCCCCCCCCccccceeeeEEEecC---CCcchHHHHHHHHHhcCCCCCCCceeEecCC--CCCCcc
Q 001485 119 EPWNVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKP---DPGNSQDLFIRSLSALGIDVTEHDIRFVEDN--WESPVL 193 (1070)
Q Consensus 119 ~~~~~ayv~p~~rp~d~ryg~npnrl~~~~q~qvi~kp---~p~~~q~lyl~sl~~~gi~~~~hdirfved~--we~p~l 193 (1070)
.|.++.++..+.|.+.- ..-|+-.|||.=+++-= +-.++..+-.+.++++|+ .++||.-.= +--|++
T Consensus 356 ~P~k~fsigrVfR~d~~----DatH~~eFhQ~Eg~vi~~~~s~~~L~~~l~~f~~~lG~----~~~RfrP~yfPfTEPS~ 427 (494)
T PTZ00326 356 KPKKYFSIDRVFRNETL----DATHLAEFHQVEGFVIDRNLTLGDLIGTIREFFRRIGI----TKLRFKPAFNPYTEPSM 427 (494)
T ss_pred CCceEEecCCEecCCCC----CCCcCceeEEEEEEEEeCCCCHHHHHHHHHHHHHhcCC----CceEEecCCCCCCCCee
Confidence 49999999999999863 45788899999865533 224555556678889997 689997210 111221
Q ss_pred ccccccceeeec--C--eeeeeeehhh----hcCCcccCcceeeehhhhHHHHHHHhCCCceeee
Q 001485 194 GAWGLGWEIWMD--G--MEITQFTYFQ----QAGSLQLSPVSVEITYGLERILMLLQGVDHFKKI 250 (1070)
Q Consensus 194 ga~glgwevw~~--g--meitqftyfq----q~gg~~~~~~~~eitygler~~m~~q~~~~~~~~ 250 (1070)
= -+||+. | +||-.--.|+ ...|++.+....=.--||||+||..=|++++-|+
T Consensus 428 E-----v~v~~~~~gkWIEIgg~Gm~rpevL~~~Gi~~~~~~~A~GlGleRlaMi~ygi~DIR~l 487 (494)
T PTZ00326 428 E-----IFGYHPGLKKWVEVGNSGIFRPEMLRPMGFPEDVTVIAWGLSLERPTMIKYGIKNIRDL 487 (494)
T ss_pred E-----EEEEecCCCcEEEEeCcCccCHHHHHhcCCCCcceEEEEEecHHHHHHHHhCCcHHHHH
Confidence 1 112221 2 5555555555 2345654432344557899999999999988765
No 43
>TIGR03671 cca_archaeal CCA-adding enzyme.
Probab=84.31 E-value=8.2 Score=46.04 Aligned_cols=118 Identities=13% Similarity=0.152 Sum_probs=85.0
Q ss_pred cchhhhhcccCCChHhHHHHHHHHHHHHHHHHHhCCCCCCcceeecccccceeeecccCccCcchhhhhcCCcccccccc
Q 001485 387 RLFVLEIGTEEMPPQDVVNASQQLKDLMLQLLNKQKLSHGEVQAFGTPRRLVVFVESLCQKQSENEFEARGPPVSKAFDQ 466 (1070)
Q Consensus 387 ~~lLlEIGtEELPa~~v~~a~~ql~~~~~~~L~~~rL~~~~i~~f~TPRRLav~V~~l~~~q~d~~~e~kGP~v~~Afd~ 466 (1070)
.-+.+++-.+++|...+.+-++-..+.+.+.|+.++...=...+++.-.. +.++-.+...+-...+...|||+
T Consensus 280 ~~~~~~f~~p~~v~Dil~pQl~r~~~~i~~~L~~~gF~v~r~~~~~~~~~-~~l~~el~~~~lp~~~~h~GPpv------ 352 (408)
T TIGR03671 280 TLLAIVFRTPDVVDDILYPQLERSGRSLVKLLEREGFEVLRYGVWADENT-CYLLLELESAELPRVKLHVGPPV------ 352 (408)
T ss_pred EEEEEEeCCCCCCccchhHHHHHHHHHHHHHHHHCCCEEEEeeeecCCCe-EEEEEEeeccccCCceeeeCCCc------
Confidence 55777888899999999999999999999999999987666666776666 55555577777788899999999
Q ss_pred CCCCc-HHHHHHHHHCCCCccCceEEEeCCeeEEEEEEEecchhHHHHHHHHH
Q 001485 467 QGNPT-KAVEGFCQRYAVPIDSLVTKAAGKTEYVYARVKETARLALEVLSEDV 518 (1070)
Q Consensus 467 ~G~pT-kAa~GFak~~Gv~~~~L~~~~~~kgeYv~~~~~~~G~~t~evL~eil 518 (1070)
++ ..+++|.+++.-...--.+ +++ -+++.+..+-..+.++|.+.+
T Consensus 353 ---~~~~~a~~F~~k~~~~~~gp~I---~~~-r~~~~~~R~~~~~~~~l~~~~ 398 (408)
T TIGR03671 353 ---WVRDHAEKFIEKYEDVDYGPFI---EGD-RLYVEKERKYTTAEDLLRDEL 398 (408)
T ss_pred ---cchhHHHHHHHHhccCCCCCEe---eCC-EEEEEEeeecccHHHHHHHHh
Confidence 33 5689999998321111122 233 445555555677777776654
No 44
>PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed
Probab=83.48 E-value=4.3 Score=48.40 Aligned_cols=159 Identities=18% Similarity=0.311 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHHhhcCceeeeccccc-------ccc--cc-----C---CHHH---------Hhhhc------CCCcceE
Q 001485 76 FQQAIQRLQEYWASVGCSVMQCSNTE-------VGA--GT-----M---NPLT---------FLRVL------GPEPWNV 123 (1070)
Q Consensus 76 ~q~~i~~l~~~w~~~gc~~~q~~~~e-------~ga--gt-----~---~p~t---------~~~~l------~~~~~~~ 123 (1070)
...+...+.+|....|..-..++... +|. |+ + .... +++.+ .+.|-++
T Consensus 206 ~s~Le~aIR~~f~~~GF~EV~TPtLt~ee~~e~~g~~~g~~i~~~my~ideel~LRpsLtPsLlr~la~n~k~~~~P~RI 285 (417)
T PRK09537 206 LGKLERDITKFFVDRGFLEIKSPILIPAEYIERMGIDNDTELSKQIFRVDKNFCLRPMLAPGLYNYLRKLDRILPDPIKI 285 (417)
T ss_pred HHHHHHHHHHHHHHCCCEEEECCeeecHHHHHHhCCCCcccchhhheeeCCceEehhhhHHHHHHHHHhhhhcccCCeeE
Confidence 46678888999999999988887772 121 10 1 1112 23222 4779999
Q ss_pred EeecCCCCCCCCCCCCCCccccceeeeEEEecCCC---cchHHHHHHHHHhcCCCCCCCceeEecCCCCCCccccccccc
Q 001485 124 AYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDP---GNSQDLFIRSLSALGIDVTEHDIRFVEDNWESPVLGAWGLGW 200 (1070)
Q Consensus 124 ayv~p~~rp~d~ryg~npnrl~~~~q~qvi~kp~p---~~~q~lyl~sl~~~gi~~~~hdirfved~we~p~lga~glgw 200 (1070)
.|+-++.|.... |. .++..++|+-+.+==+. .++..+--+.|+.|||+ .+.+++++.- .|=+=
T Consensus 286 FEIG~VFR~E~~--g~--~hlrEf~Ql~~~iiGs~~~f~dL~~lleeLL~~LGI~-----f~i~s~~~fi-----~GR~a 351 (417)
T PRK09537 286 FEIGPCYRKESD--GK--EHLEEFTMVNFCQMGSGCTRENLENIIDDFLKHLGID-----YEIIGDNCMV-----YGDTI 351 (417)
T ss_pred EEEeceEecCCC--CC--CCcceEEEEEEEEeCCchHHHHHHHHHHHHHHHCCCC-----cEEecCCcce-----ecCeE
Confidence 999999998753 32 47889999988764332 25666677889999984 5566555443 33333
Q ss_pred eeeecCeee--eeeeh--hhhcCCcccCcceeeehhhhHHHHHHHhCCCceeee
Q 001485 201 EIWMDGMEI--TQFTY--FQQAGSLQLSPVSVEITYGLERILMLLQGVDHFKKI 250 (1070)
Q Consensus 201 evw~~gmei--tqfty--fqq~gg~~~~~~~~eitygler~~m~~q~~~~~~~~ 250 (1070)
+|+++|.|| -=|-- -..-=|++..-+..|| |||||+|...|++||.+.
T Consensus 352 dI~~g~~el~~G~fGEi~VLe~fGI~~PVva~EI--dLerL~~~~~g~~~ir~~ 403 (417)
T PRK09537 352 DIMHGDLELSSAVVGPIPLDREWGIDKPWIGAGF--GLERLLKVKHGYKNIKRA 403 (417)
T ss_pred EEEeCCEEEeeEEEEEEehhhhcCCCCceEEEEE--eHHHHHHHHhCcHHHHHh
Confidence 455555444 22211 1222345554455565 789999999999998765
No 45
>PRK10119 putative hydrolase; Provisional
Probab=80.30 E-value=13 Score=41.30 Aligned_cols=102 Identities=18% Similarity=0.154 Sum_probs=63.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHhhhhccccchhhcC---hhhhHHHHHHHHHh--CCCCHH---
Q 001485 737 KLGTMLDKTMRVQNMVRKLSLDLGINEDMLQIVQEAASLAMSDLATSVVMEF---TSLAGVMACHYALR--DGYSQQ--- 808 (1070)
Q Consensus 737 kLGSl~DK~~RI~~La~~La~~l~~~~~~~~~~~RAA~L~KaDL~T~MV~EF---PELQGiMG~~YA~~--~GE~~~--- 808 (1070)
.-|-=++-++|+.++|..||+.-+.+ ...+.-||.|--..-......+- ++..--+..-+-+. .|-+++
T Consensus 22 ~~~HD~~Hi~RV~~lA~~Ia~~e~~D---~~vv~lAAlLHDv~d~~k~~~~~~~~~~~~a~~a~~~L~~~~~g~~~~~i~ 98 (231)
T PRK10119 22 DAAHDICHFRRVWATAQKLAADDDVD---MLVVLTACYFHDIVSLAKNHPQRHRSSILAAEETRRILREDFPDFPAEKIE 98 (231)
T ss_pred CCccChHHHHHHHHHHHHHHHhcCCC---HHHHHHHHHHhhcchhhhcCccccchhhHHHHHHHHHHHHcccCcCHHHHH
Confidence 44555889999999999999876654 35677888886542100000010 11112222222333 577775
Q ss_pred -HHHHHHhhcCCCCCCCCCCCcchhhHHHHhhhHHHH
Q 001485 809 -IAEALLEINLPRFSGDVLPKTDVGTVLAVADRLDTL 844 (1070)
Q Consensus 809 -VA~AI~EhYlPr~agD~LP~t~~G~iLSlADKlDtL 844 (1070)
|..+|..|=. ++..-|.|..|.||.=|||||.|
T Consensus 99 ~V~~iI~~~sf---s~~~~p~tlE~kIVQDADRLDAi 132 (231)
T PRK10119 99 AVCHAIEAHSF---SAQIAPLTLEAKIVQDADRLEAL 132 (231)
T ss_pred HHHHHHHHcCC---CCCCCCCCHHHhhhhhHHHHHhc
Confidence 5556665543 44456899999999999999986
No 46
>TIGR02367 PylS pyrrolysyl-tRNA synthetase. PylS is the archaeal enzyme responsible for charging the pyrrolysine tRNA, PylT, by ligating a free molecule of pyrrolysine. Pyrrolysine is encoded at an in-frame UAG (amber) at least in several corrinoid-dependent methyltransferases of the archaeal genera Methanosarcina and Methanococcoides, such as trimethylamine methyltransferase.
Probab=79.85 E-value=3.6 Score=49.37 Aligned_cols=161 Identities=15% Similarity=0.214 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHhhcCceeeeccccc-------cc--cc--cCCHH------H---------Hhhhc------CCCcceE
Q 001485 76 FQQAIQRLQEYWASVGCSVMQCSNTE-------VG--AG--TMNPL------T---------FLRVL------GPEPWNV 123 (1070)
Q Consensus 76 ~q~~i~~l~~~w~~~gc~~~q~~~~e-------~g--ag--t~~p~------t---------~~~~l------~~~~~~~ 123 (1070)
+..+...+.++....|+.=+..+-.+ +| .| ..||. + ++|.+ -+.|-++
T Consensus 242 ~~~Led~IRevfvg~GFqEV~TPtLt~eE~~E~m~~~~g~eI~n~Iyk~ee~lvLRPdLTPsLaR~La~N~~~l~~PqKI 321 (453)
T TIGR02367 242 LGKLERDITKFFVDRGFLEIKSPILIPAEYIERMGIDNDTELSKQIFRVDKNFCLRPMLAPNLYNYLRKLDRALPDPIKI 321 (453)
T ss_pred HHHHHHHHHHHHHHCCCEEEECCeecchHHHHhhcCccCCcccccceEecCceEecccCHHHHHHHHHHhhhhccCCeeE
Confidence 56677778888899998876666662 22 22 12222 3 33333 2669999
Q ss_pred EeecCCCCCCCCCCCCCCccccceeeeEEEe---cCCCcchHHHHHHHHHhcCCCCCCCceeEecCCCCCCccccccccc
Q 001485 124 AYVEPSIRPDDSRYGENPNRLQRHTQFQVIL---KPDPGNSQDLFIRSLSALGIDVTEHDIRFVEDNWESPVLGAWGLGW 200 (1070)
Q Consensus 124 ayv~p~~rp~d~ryg~npnrl~~~~q~qvi~---kp~p~~~q~lyl~sl~~~gi~~~~hdirfved~we~p~lga~glgw 200 (1070)
+|+.++.|.+.+. ..|+..++|.=+.+ ...-.++..+--+.|+.||| |++|.|+.|.=|--+|
T Consensus 322 FEIGkVFR~E~~~----~thlREF~QL~~eIaG~~atfaDlealL~e~Lr~LGI-----dfeitE~s~FI~GR~A----- 387 (453)
T TIGR02367 322 FEIGPCYRKESDG----KEHLEEFTMLNFCQMGSGCTRENLEAIIKDFLDHLEI-----DFEIVGDSCMVYGDTL----- 387 (453)
T ss_pred EEEcCeEecCCCC----CCCcCeEEEEEEEEECCCCCHHHHHHHHHHHHHHCCC-----ceEEeCCCceEeccee-----
Confidence 9999999876542 25788888887655 33344566666678899998 4888766443222222
Q ss_pred eeeecCeeeeeeehhhhc-----CCcccCcceeeehhhhHHHHHHHhCCCceeeeeeC
Q 001485 201 EIWMDGMEITQFTYFQQA-----GSLQLSPVSVEITYGLERILMLLQGVDHFKKIQYA 253 (1070)
Q Consensus 201 evw~~gmeitqftyfqq~-----gg~~~~~~~~eitygler~~m~~q~~~~~~~~~~~ 253 (1070)
+|-.+++||. .-+|=-+ =|++.--+..|| |||||+|...|.+||-|+.-+
T Consensus 388 ~I~~G~~Ev~-~GvfGEihpL~~fGIe~PVvAfEI--~LeRLam~~~g~~dir~~~~~ 442 (453)
T TIGR02367 388 DIMHGDLELS-SAVVGPIPLDREWGIDKPWIGAGF--GLERLLKVKHDFKNIKRAARS 442 (453)
T ss_pred eeecCCEEEe-eEEEeecccccccCCCCccEEEEe--ehhHHHHHHhCcHHHHHHHhh
Confidence 2221222220 0011100 134443344454 889999999999999988543
No 47
>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional
Probab=78.92 E-value=12 Score=45.58 Aligned_cols=124 Identities=19% Similarity=0.385 Sum_probs=76.8
Q ss_pred HhhhcCCCcceEEeecCCCCCCCCCCCCCCccccceeeeEEEecCCCcchHH---HHHHHHHhcCCCCCCCceeEecCCC
Q 001485 112 FLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQD---LFIRSLSALGIDVTEHDIRFVEDNW 188 (1070)
Q Consensus 112 ~~~~l~~~~~~~ayv~p~~rp~d~ryg~npnrl~~~~q~qvi~kp~p~~~q~---lyl~sl~~~gi~~~~hdirfved~w 188 (1070)
++..-++.|.++.++-++.|+..- ...|+..++|.=+++=-.+.+.-+ +--.-|+.|||. +++|.....
T Consensus 342 ~l~~~~~~p~rlFeiGrVFR~e~~----d~~~l~Ef~ql~~~i~G~~~~f~elkg~l~~ll~~lGi~----~~~~~~~~~ 413 (489)
T PRK04172 342 YLASRPEPPQKYFSIGRVFRPDTI----DATHLPEFYQLEGIVMGEDVSFRDLLGILKEFYKRLGFE----EVKFRPAYF 413 (489)
T ss_pred HHHhcCCCCeEEEEecceEcCCCC----CcccCCchheEEEEEEeCCCCHHHHHHHHHHHHHHhCCc----eEEEcCCcC
Confidence 334456889999999999987421 224567888887777554444433 344456888983 688865433
Q ss_pred C--CCccccccccceeeecC---eeeeeeehh----hhcCCcccCcceeeehhhhHHHHHHHhCCCceeee
Q 001485 189 E--SPVLGAWGLGWEIWMDG---MEITQFTYF----QQAGSLQLSPVSVEITYGLERILMLLQGVDHFKKI 250 (1070)
Q Consensus 189 e--~p~lga~glgwevw~~g---meitqftyf----qq~gg~~~~~~~~eitygler~~m~~q~~~~~~~~ 250 (1070)
. .|..-| +|+++| .||--+-.| .+--|++...+..| -|||||+|..=|++++-|+
T Consensus 414 p~~~P~~~~-----~i~~~g~~w~eiG~~G~l~Pevl~~~gi~~~v~~~e--l~le~l~m~~~~~~dir~l 477 (489)
T PRK04172 414 PFTEPSVEV-----EVYHEGLGWVELGGAGIFRPEVLEPLGIDVPVLAWG--LGIERLAMLRLGLDDIRDL 477 (489)
T ss_pred CCCCCeEEE-----EEEECCCCeEEEEeccccCHHHHHHCCCCCceEEEE--EcHHHHHHHHhCCcHHHHH
Confidence 2 444444 344444 454433322 12234554434445 4899999999999988766
No 48
>PRK13300 tRNA CCA-pyrophosphorylase; Provisional
Probab=75.24 E-value=10 Score=45.72 Aligned_cols=131 Identities=18% Similarity=0.217 Sum_probs=90.5
Q ss_pred ccchhhhhcccCCChHhHHHHHHHHHHHHHHHHHhCCCCCCcceeecccccceeeecccCccCcchhhhhcCCccccccc
Q 001485 386 PRLFVLEIGTEEMPPQDVVNASQQLKDLMLQLLNKQKLSHGEVQAFGTPRRLVVFVESLCQKQSENEFEARGPPVSKAFD 465 (1070)
Q Consensus 386 ~~~lLlEIGtEELPa~~v~~a~~ql~~~~~~~L~~~rL~~~~i~~f~TPRRLav~V~~l~~~q~d~~~e~kGP~v~~Afd 465 (1070)
+..+.+++..+++|+..+.+-++-..+.+.+.|+.++...=...+++.--+-+++++ +...+-...+...|||+
T Consensus 282 t~~~~v~f~~p~~v~Dil~pQl~r~~~~i~~~L~~~gF~v~~~~~~~d~~~~~l~~e-l~~~~lp~~~~h~GPpv----- 355 (447)
T PRK13300 282 TTVLALEFPRPDIVEDILYPQLERSLRSIVKLLEREGFEVLRSGAWADEDRAYLLLE-LEVAELPNVKLHIGPPV----- 355 (447)
T ss_pred ceEEEEEeCCCCCCccchhHHHHHHHHHHHHHHHHCCCEEEEeeeecCCCeEEEEEE-eecccCCCeeeeeCCCc-----
Confidence 356888889999999999999999999999999999987666666776556555554 66666678889999999
Q ss_pred cCCCCcHH-HHHHHHHCCCCccCceEEEeCCeeEEEEEEEecchhHHHHHHHHHHHHHhcCCCCccccc
Q 001485 466 QQGNPTKA-VEGFCQRYAVPIDSLVTKAAGKTEYVYARVKETARLALEVLSEDVPSIISKLSFPKSMRW 533 (1070)
Q Consensus 466 ~~G~pTkA-a~GFak~~Gv~~~~L~~~~~~kgeYv~~~~~~~G~~t~evL~eil~~iI~~L~fpKsMRW 533 (1070)
+++. ++.|.+++.-++.-.. ++++.| ++.+..+-..+.++|. ...+.+....|..+.
T Consensus 356 ----~~~~~a~~F~~k~~~~~~g~~---I~~~r~-~~~~~R~~~~~~~~l~---~~~~~~~~lgk~i~~ 413 (447)
T PRK13300 356 ----WVREHAENFIEKYEDSVYGPF---IEGDRL-YVERERKYTTAEELLE---SDALLKVSLGKNVLE 413 (447)
T ss_pred ----CchhhHHHHHHHhccCCCCeE---EeCCEE-EEEEeeccCcHHHHHh---hhhhhccchhhhhhh
Confidence 3344 8999999944322222 234444 4444555567777777 122344444554443
No 49
>COG1713 Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]
Probab=72.86 E-value=14 Score=39.80 Aligned_cols=108 Identities=18% Similarity=0.166 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHH---hhhhccccc-------------hhhcChh-hhHHHHHHHHHh-
Q 001485 741 MLDKTMRVQNMVRKLSLDLGINEDMLQIVQEAAS---LAMSDLATS-------------VVMEFTS-LAGVMACHYALR- 802 (1070)
Q Consensus 741 l~DK~~RI~~La~~La~~l~~~~~~~~~~~RAA~---L~KaDL~T~-------------MV~EFPE-LQGiMG~~YA~~- 802 (1070)
-++.+.|+.+.|..||+..+.+. +.+.-||. +||..=... .-.++|+ |.|-.|.|++++
T Consensus 18 R~~H~l~V~~~A~~LA~~y~~d~---~kA~~AgilHD~aK~~p~~~~~~~~~~~~~~~~~~~~~~~llH~~vgay~~~~~ 94 (187)
T COG1713 18 RFEHCLGVAETAIELAEAYGLDP---EKAYLAGILHDIAKELPEQKLLKIAKKYGLELDLERESPLLLHGKVGAYLLKEE 94 (187)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCH---HHHHHHHHHHHHHhhCCHHHHHHHHHHhCCCchhhccChHHHHHHHHHHHHHHH
Confidence 36789999999999999999886 34555553 344432222 3345555 689999999998
Q ss_pred CC-CCHHHHHHHHhhcCCCCCCCCCCCcchhhHHHHhhhHHHHHHhhhcCCCCCCCCCh--hhhhHhHH
Q 001485 803 DG-YSQQIAEALLEINLPRFSGDVLPKTDVGTVLAVADRLDTLVGLFAAGCQPSSTNDP--FGLRRISY 868 (1070)
Q Consensus 803 ~G-E~~~VA~AI~EhYlPr~agD~LP~t~~G~iLSlADKlDtLvG~F~iG~~PTGSkDP--fALRRaAl 868 (1070)
-| ++++|=.||+-|--|+..- |..+.+|=|||||. =|-..| --+|+.|+
T Consensus 95 fGi~De~VL~AI~~HTtg~~~m-----t~ldkIiyiAD~iE------------p~R~~pgv~~~R~~a~ 146 (187)
T COG1713 95 FGIKDEEVLSAIEYHTTGRKQM-----TLLDKILYVADKIE------------PGRGFPGVDKIRQIAL 146 (187)
T ss_pred hCCCcHHHHHHHHHhccCCCcc-----chhhheeeeecccc------------CCCCCCCchhHHHHHH
Confidence 45 6779999999999998544 66789999999986 245566 66777665
No 50
>COG2206 c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms]
Probab=68.60 E-value=29 Score=40.26 Aligned_cols=102 Identities=22% Similarity=0.273 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHhhhhccc---cchh--------hcCh--hhhHHHHHHHHHhCC-CCH
Q 001485 742 LDKTMRVQNMVRKLSLDLGINEDMLQIVQEAASLAMSDLA---TSVV--------MEFT--SLAGVMACHYALRDG-YSQ 807 (1070)
Q Consensus 742 ~DK~~RI~~La~~La~~l~~~~~~~~~~~RAA~L~KaDL~---T~MV--------~EFP--ELQGiMG~~YA~~~G-E~~ 807 (1070)
+--+.|+..++..||.++|++.++...+.-||.|-...-. +.+. .||- ....++|..++..-+ .++
T Consensus 150 ~~Hs~~va~~a~~ia~~lgl~~~~i~~l~~aalLHDIGKi~ip~~IL~K~g~Lt~eE~~~ik~H~~~g~~iL~~~~~~~~ 229 (344)
T COG2206 150 YGHSVRVAELAEAIAKKLGLSEEKIEELALAGLLHDIGKIGIPDSILNKPGKLTEEEFEIIKKHPIYGYDILKDLPEFLE 229 (344)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcccccCCHHHhCCCCCCCHHHHHHHHhchHHHHHHHHhcccccH
Confidence 4468999999999999999999888888888888654321 1111 3333 345689999998887 444
Q ss_pred H-HHHHHHhhc------CCCC-CCCCCCCcchhhHHHHhhhHHHHH
Q 001485 808 Q-IAEALLEIN------LPRF-SGDVLPKTDVGTVLAVADRLDTLV 845 (1070)
Q Consensus 808 ~-VA~AI~EhY------lPr~-agD~LP~t~~G~iLSlADKlDtLv 845 (1070)
. .+.|+.-|. .|++ .|+++ +..+.|+|+||=.|.++
T Consensus 230 ~~~~~~l~HHEr~DGtGYP~GL~GeeI--~l~aRIiAVADvydAlt 273 (344)
T COG2206 230 SVRAVALRHHERWDGTGYPRGLKGEEI--PLEARIIAVADVYDALT 273 (344)
T ss_pred HHHHHHHHhhhccCCCCCCCCCCcccC--ChHhHHHHHhhHHHHHh
Confidence 4 444555444 5766 46777 56899999999999997
No 51
>cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain. This domain is the core catalytic domain of tRNA synthetases of the subgroup containing glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. These enzymes belong to class II aminoacyl-tRNA synthetases (aaRS) based upon their structure and the presence of three characteristic sequence motifs in the core domain. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ and the accessory subunit of mitochondrial polymerase gamma (Pol gamma b) . Most class II tRNA synthetases are dimers, with this subgroup consisting of mostly homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=68.51 E-value=17 Score=38.88 Aligned_cols=58 Identities=19% Similarity=0.230 Sum_probs=43.0
Q ss_pred CCCcceEEeecCCCCCCCCCCCCCCccccceeee--EEEecC--CC---cchHHHHHHHHHhcCCC
Q 001485 117 GPEPWNVAYVEPSIRPDDSRYGENPNRLQRHTQF--QVILKP--DP---GNSQDLFIRSLSALGID 175 (1070)
Q Consensus 117 ~~~~~~~ayv~p~~rp~d~ryg~npnrl~~~~q~--qvi~kp--~p---~~~q~lyl~sl~~~gi~ 175 (1070)
.+-|.+++|+.+|.|-.-+-. .-.-|+..++|- .++..| +. ..+.+++.+.|+.||++
T Consensus 85 ~~lP~r~~~~g~~fR~E~~~~-~gl~R~reF~q~e~~~~~~~~~~~~~~~e~~~~~~~~l~~lgl~ 149 (235)
T cd00670 85 RALPLRLDQIGPCFRHEPSGR-RGLMRVREFRQVEYVVFGEPEEAEEERREWLELAEEIARELGLP 149 (235)
T ss_pred hhcCeeeeeecccccCCCCCC-CCChhheeeeeceEEEEcCHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 456999999999999765522 223588899985 455555 22 46778999999999984
No 52
>PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Phenylalanyl-tRNA synthetase (6.1.1.20 from EC) is an alpha2/beta2 tetramer composed of 2 subunits that belongs to class IIc. In eubacteria, a small subunit (pheS gene) can be designated as beta (E. coli) or alpha subunit (nomenclature adopted in InterPro). Reciprocally the large subunit (pheT gene) can be designated as alpha (E. coli) or beta (see IPR004531 from INTERPRO and IPR004532 from INTERPRO). In all other kingdoms the two subunits have equivalent length in eukaryota, and can be identified by specific signatures. The enzyme from Thermus thermophilus has an alpha 2 beta 2 type quaternary structure and is one of the most complicated members of the synthetase family. Identification of phenylalanyl-tRNA synthetase as a member of class II aaRSs was based only on sequence alignment of the small alpha-subunit with other synthetases [].; GO: 0000049 tRNA binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3TUP_A 3HFV_A 3CMQ_A 3TEG_A 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B ....
Probab=67.64 E-value=43 Score=37.42 Aligned_cols=163 Identities=21% Similarity=0.367 Sum_probs=98.6
Q ss_pred chHHHHHHHHHHHHhhcCceeeecccccc--------ccccCCH----------------------------HHHhhhc-
Q 001485 74 PTFQQAIQRLQEYWASVGCSVMQCSNTEV--------GAGTMNP----------------------------LTFLRVL- 116 (1070)
Q Consensus 74 ~~~q~~i~~l~~~w~~~gc~~~q~~~~e~--------gagt~~p----------------------------~t~~~~l- 116 (1070)
.-++.++.++.+++...|+..+..+.+|. +.---|| +..+++|
T Consensus 17 hp~~~~~~~i~~~~~~~Gf~e~~~~~v~s~~~nFD~Ln~p~dHpaR~~~Dtfyi~~p~~~~~~~~vLRThts~~~~~~l~ 96 (247)
T PF01409_consen 17 HPITKFIREIRDIFVGMGFQEVEGPEVESEFYNFDALNIPQDHPARDMQDTFYISNPYSAEEDYSVLRTHTSPGQLRTLN 96 (247)
T ss_dssp SHHHHHHHHHHHHHHCTTSEEESTTSEEEHHHHTGGGTSTTTSCGGCGTTSEBSCSSSBCECSSEEE-SSTHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHCCCeEeeCCeEEeeHHHHHhhCcCCCccccccccceeeeccccccchhhhhhhhhhHHHHHHHH
Confidence 34899999999999999999888655432 2222232 2234556
Q ss_pred --CCCcceEEeecCCCCCCCCCCCCCCccccceeeeEEEecCCCcchHHH---HHHHHHhc-CCCCCCCceeEecCCC--
Q 001485 117 --GPEPWNVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDL---FIRSLSAL-GIDVTEHDIRFVEDNW-- 188 (1070)
Q Consensus 117 --~~~~~~~ayv~p~~rp~d~ryg~npnrl~~~~q~qvi~kp~p~~~q~l---yl~sl~~~-gi~~~~hdirfved~w-- 188 (1070)
.+.|+++..+-.+.|+++- ..+.+-.+||.=.++==..-++.+| .-.=++.| |++ =.+||.+.--
T Consensus 97 ~~~~~p~kif~iG~VyR~D~~----D~th~~~f~Qleg~~~~~~~~f~~Lk~~l~~l~~~lfG~~---~~~r~~ps~fPf 169 (247)
T PF01409_consen 97 KHRPPPIKIFEIGKVYRRDEI----DATHLPEFHQLEGLVVDKNVTFEDLKGTLEELLKELFGID---VKVRFRPSYFPF 169 (247)
T ss_dssp TTSHSSEEEEEEEEEESSSCS----BSSBESEEEEEEEEEEETTE-HHHHHHHHHHHHHHHHTTT---EEEEEEECEETT
T ss_pred HhcCCCeEEEecCceEecCCc----ccccCccceeEeeEEEecccchhHHHHHHHHHHHHHhhcc---cceEeecCCCCc
Confidence 7789999999999999873 2355667777665443233444443 34456778 974 2588877642
Q ss_pred CCCcccc---c----cccceeeecCeeeeeeehh----hhcCCcc--cCcceeeehhhhHHHHHHHhCCCceeeee
Q 001485 189 ESPVLGA---W----GLGWEIWMDGMEITQFTYF----QQAGSLQ--LSPVSVEITYGLERILMLLQGVDHFKKIQ 251 (1070)
Q Consensus 189 e~p~lga---~----glgwevw~~gmeitqftyf----qq~gg~~--~~~~~~eitygler~~m~~q~~~~~~~~~ 251 (1070)
-.|..-+ | +-|| +||--+--+ -.-.|++ +.-.+ .--|||||||...|++++-++-
T Consensus 170 tePs~e~~i~~~~~~~~~w------iEvgg~G~vhP~Vl~~~gid~~~~~~A--~G~GleRlam~~~gi~diR~~~ 237 (247)
T PF01409_consen 170 TEPSREADIYCGVCKGGGW------IEVGGCGMVHPEVLENWGIDEEYPGFA--FGLGLERLAMLKYGIPDIRLLY 237 (247)
T ss_dssp EEEEEEEEEEEECTTTTCE------EEEEEEEEE-HHHHHHTT--TTSEEEE--EEEEHHHHHHHHHT-SSGGHHH
T ss_pred ccCCeEEEEEEeeccCCCc------eEEeecccccHhhhhccCcCccceEEE--ecCCHHHHHHHHcCCchHHHHh
Confidence 2343322 2 3444 343322222 1335673 33333 3359999999999999987653
No 53
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=59.59 E-value=7.6 Score=40.80 Aligned_cols=87 Identities=26% Similarity=0.523 Sum_probs=60.4
Q ss_pred HHHhhhcCCCcceEEeecCCC-CCCCCCCCCCCccccceeeeEE------EecCCCcchHHHHHHHHHhcCCCCCCCcee
Q 001485 110 LTFLRVLGPEPWNVAYVEPSI-RPDDSRYGENPNRLQRHTQFQV------ILKPDPGNSQDLFIRSLSALGIDVTEHDIR 182 (1070)
Q Consensus 110 ~t~~~~l~~~~~~~ayv~p~~-rp~d~ryg~npnrl~~~~q~qv------i~kp~p~~~q~lyl~sl~~~gi~~~~hdir 182 (1070)
..+|+.|+.+ ++++=+-..- .-...+-..-+ |..|+..-+ +.||+| ++|...++.+|++ .-++-
T Consensus 105 ~~~L~~l~~~-~~l~ilTNg~~~~~~~~l~~~g--l~~~Fd~v~~s~~~g~~KP~~----~~f~~~~~~~g~~--p~~~l 175 (229)
T COG1011 105 LEALKELGKK-YKLGILTNGARPHQERKLRQLG--LLDYFDAVFISEDVGVAKPDP----EIFEYALEKLGVP--PEEAL 175 (229)
T ss_pred HHHHHHHHhh-ccEEEEeCCChHHHHHHHHHcC--ChhhhheEEEecccccCCCCc----HHHHHHHHHcCCC--cceEE
Confidence 4577888777 7777775531 11122222221 344444444 358887 6888999999998 45699
Q ss_pred EecCCCCCCccccccccce-eeec
Q 001485 183 FVEDNWESPVLGAWGLGWE-IWMD 205 (1070)
Q Consensus 183 fved~we~p~lga~glgwe-vw~~ 205 (1070)
||.|+.+|=..||--+||. ||++
T Consensus 176 ~VgD~~~~di~gA~~~G~~~vwi~ 199 (229)
T COG1011 176 FVGDSLENDILGARALGMKTVWIN 199 (229)
T ss_pred EECCChhhhhHHHHhcCcEEEEEC
Confidence 9999999999999999998 5876
No 54
>TIGR00459 aspS_bact aspartyl-tRNA synthetase, bacterial type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_bact, represents aspartyl-tRNA synthetases from the Bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). This model generates very low scores for the archaeal type of aspS and for asnS; scores between the trusted and noise cutoffs represent fragmentary sequences.
Probab=58.83 E-value=6.8 Score=48.71 Aligned_cols=60 Identities=25% Similarity=0.467 Sum_probs=49.1
Q ss_pred cccccceeeecCeeee-----------eeehhhhcCCccc----------------CcceeeehhhhHHHHHHHhCCCce
Q 001485 195 AWGLGWEIWMDGMEIT-----------QFTYFQQAGSLQL----------------SPVSVEITYGLERILMLLQGVDHF 247 (1070)
Q Consensus 195 a~glgwevw~~gmeit-----------qftyfqq~gg~~~----------------~~~~~eitygler~~m~~q~~~~~ 247 (1070)
+.+--|+..|||+||- |-.-|.|.|=-+- -|+.+=|..|++||.|.|-|.+||
T Consensus 465 ~~~~~yDLvlnG~ElggGs~rihd~~~Q~~~f~~l~~~~ee~~~~f~~ll~Al~yG~PPhgG~alG~DRlvmlLt~~~sI 544 (583)
T TIGR00459 465 ALAEAYDLVLNGVELGGGSIRIHDPEVQKKVFEILGIDPEEAREKFGFLLEAFKYGTPPHAGFALGLDRLMMLLTGTDNI 544 (583)
T ss_pred hhhheeeEEEeceEecceeEEeCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCCCcCceeccHHHHHHHHcCCCch
Confidence 6677899999999985 7788888773221 277888999999999999999999
Q ss_pred eeeeeCC
Q 001485 248 KKIQYAD 254 (1070)
Q Consensus 248 ~~~~~~~ 254 (1070)
-|+.-=+
T Consensus 545 RDVIaFP 551 (583)
T TIGR00459 545 RDVIAFP 551 (583)
T ss_pred hheeecC
Confidence 9985433
No 55
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]
Probab=52.77 E-value=42 Score=39.54 Aligned_cols=115 Identities=25% Similarity=0.289 Sum_probs=73.9
Q ss_pred cccCcccccCCCCHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHhhhh-------------ccccchhhcChhhhHH
Q 001485 728 QLKGILFHEKLGTMLDKTMRVQNMVRKLSLDLGINEDMLQIVQEAASLAMS-------------DLATSVVMEFTSLAGV 794 (1070)
Q Consensus 728 kLk~VvF~~kLGSl~DK~~RI~~La~~La~~l~~~~~~~~~~~RAA~L~Ka-------------DL~T~MV~EFPELQGi 794 (1070)
.|...+ ..+=+...+.++|+..+++.||+.+|+++.+.+.+.-||.|--- =..|.==.|-....=+
T Consensus 174 ~L~~~~-E~R~~etg~H~~Rv~~~~~~lAe~lgLse~~v~~i~~AapLHDIGKvaiPD~ILlKpg~Lt~ee~~imk~H~~ 252 (360)
T COG3437 174 ELAALL-EVRDYETGDHLERVAQYSELLAELLGLSEEEVDLIKKAAPLHDIGKVAIPDSILLKPGKLTSEEFEIMKGHPI 252 (360)
T ss_pred HHHHHH-HhcccchhhHHHHHHHHHHHHHHHhCCCHHHHHHHHhccchhhcccccCChHHhcCCCCCCHHHHHHHhcchH
Confidence 333333 55567778999999999999999999999888888888876422 1222222222233334
Q ss_pred HHHHHHHhCCCC-----HHHHHHHHhhc----CCCC-CCCCCCCcchhhHHHHhhhHHHHHH
Q 001485 795 MACHYALRDGYS-----QQIAEALLEIN----LPRF-SGDVLPKTDVGTVLAVADRLDTLVG 846 (1070)
Q Consensus 795 MG~~YA~~~GE~-----~~VA~AI~EhY----lPr~-agD~LP~t~~G~iLSlADKlDtLvG 846 (1070)
.|..- +..-+. .+||.-=.|+| .|.+ .||.+|- .|.+++|||-.|-|++
T Consensus 253 ~G~~i-l~~s~~~mq~a~eIa~~HHErwDGsGYPdgLkGd~IPl--~arI~aiADvfDAL~s 311 (360)
T COG3437 253 LGAEI-LKSSERLMQVAAEIARHHHERWDGSGYPDGLKGDEIPL--SARIVAIADVFDALVS 311 (360)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCccccch--hHHHHHHHHHHHHHhc
Confidence 45542 222222 23444444555 5554 6888886 4899999999999864
No 56
>COG1746 CCA1 tRNA nucleotidyltransferase (CCA-adding enzyme) [Translation, ribosomal structure and biogenesis]
Probab=50.47 E-value=72 Score=38.50 Aligned_cols=129 Identities=16% Similarity=0.191 Sum_probs=89.6
Q ss_pred ccchhhhhcccCCChHhHHHHHHHHHHHHHHHHHhCCCCCCcceeecccc-cceeeecccCccCcchhhhhcCCcccccc
Q 001485 386 PRLFVLEIGTEEMPPQDVVNASQQLKDLMLQLLNKQKLSHGEVQAFGTPR-RLVVFVESLCQKQSENEFEARGPPVSKAF 464 (1070)
Q Consensus 386 ~~~lLlEIGtEELPa~~v~~a~~ql~~~~~~~L~~~rL~~~~i~~f~TPR-RLav~V~~l~~~q~d~~~e~kGP~v~~Af 464 (1070)
+.-+.+.++..++|+..+-+-++-+.+.+.+.|++++...=...+++--. |..|+++ +....-...+..+|||+ |
T Consensus 283 t~v~~l~~~~pd~vdDilypQl~r~~~~l~r~Le~~gF~vl~~~~~~D~~~~~~v~~E-~~~~~l~~i~~r~GPp~---~ 358 (443)
T COG1746 283 THVLALVFPKPDLVDDILYPQLERTARSLFRALEEEGFRVLRSGVWSDESERIYVLLE-LESKELPRIELRVGPPV---W 358 (443)
T ss_pred ceEEEEEeCCCCCCcchhhHHHHHHHHHHHHHHHHcCCEEeeeeeeecCCcceEEEEE-EecccccceeeecCCCc---c
Confidence 35688999999999999999999999999999999987654444454444 8888776 56666678889999998 2
Q ss_pred ccCCCCcHHHHHHHHHCCCCccCceEEEeCCeeEEEEEEEecchhHHHHHHHHHHHHHhcCCCCccccc
Q 001485 465 DQQGNPTKAVEGFCQRYAVPIDSLVTKAAGKTEYVYARVKETARLALEVLSEDVPSIISKLSFPKSMRW 533 (1070)
Q Consensus 465 d~~G~pTkAa~GFak~~Gv~~~~L~~~~~~kgeYv~~~~~~~G~~t~evL~eil~~iI~~L~fpKsMRW 533 (1070)
+ +-|.. |.+|+++.. ...|.|+...+.. ....+.+.+++.+=|.+.++.|...=
T Consensus 359 ~-----e~a~r-F~~k~~~~~-------~~~g~~~~~~r~~--~~~~~~~~~i~~~~l~~~s~gk~v~~ 412 (443)
T COG1746 359 T-----EHAVR-FIEKYDVRW-------REGGPLAVEDRLY--VTIVRVLEDILRKPLGNHSLGKNVKD 412 (443)
T ss_pred c-----hhHHH-HHHhcccce-------eecCcccccccee--eehhhhHHHHHhCcccccccccchhh
Confidence 1 24555 999995542 2234444433111 11223777777777777888885543
No 57
>COG2024 Phenylalanyl-tRNA synthetase alpha subunit (archaeal type) [Translation, ribosomal structure and biogenesis]
Probab=49.74 E-value=19 Score=42.58 Aligned_cols=130 Identities=21% Similarity=0.443 Sum_probs=85.3
Q ss_pred CCcceEEeecCCCCCCCCCCCCCCccccceeeeEEEecC---CCcchHHHHHHHHHhcCCCCCCCceeEecCCCCC----
Q 001485 118 PEPWNVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKP---DPGNSQDLFIRSLSALGIDVTEHDIRFVEDNWES---- 190 (1070)
Q Consensus 118 ~~~~~~ayv~p~~rp~d~ryg~npnrl~~~~q~qvi~kp---~p~~~q~lyl~sl~~~gi~~~~hdirfved~we~---- 190 (1070)
+-|.+..=+--|.|-.- +|+-.||..||-=--++=- +-++=.-.==+-|+.+|. .+.||+-|+=.|
T Consensus 205 ~~PlklFSIDRCFRREQ---~ED~shLmtYhSASCVvvde~vtvD~GKaVAEglL~qfGF----e~F~FrpDEK~SKYYv 277 (536)
T COG2024 205 DPPLKLFSIDRCFRREQ---REDASHLMTYHSASCVVVDEDVTVDDGKAVAEGLLRQFGF----EKFRFRPDEKKSKYYV 277 (536)
T ss_pred CCCceeeehhHHhhhhh---hcchhhhhhhccceEEEEcCcccccccHHHHHHHHHHhCc----cceeeccccccccccC
Confidence 45677777777766442 4777889888865433311 112222233345788997 789999999776
Q ss_pred -----------Cccc----cccccceeeecCeeeeeeehhhhcC----CcccCcceeeehhhhHHHHHHHhCCCceeeee
Q 001485 191 -----------PVLG----AWGLGWEIWMDGMEITQFTYFQQAG----SLQLSPVSVEITYGLERILMLLQGVDHFKKIQ 251 (1070)
Q Consensus 191 -----------p~lg----a~glgwevw~~gmeitqftyfqq~g----g~~~~~~~~eitygler~~m~~q~~~~~~~~~ 251 (1070)
|-|+ -+|=|| .||.-|-.+--.. ||+| ...-+--|.||+||.|-|.+.|-.+.
T Consensus 278 P~TQTEVyAyHPkL~gs~~kysdgW------iEiATFGlYSP~ALaeY~Id~--pVMNLGlGVERlaMIl~g~~DVR~mv 349 (536)
T COG2024 278 PGTQTEVYAYHPKLVGSIEKYSDGW------IEIATFGLYSPIALAEYGIDY--PVMNLGLGVERLAMILHGADDVRSMV 349 (536)
T ss_pred CCccceEEEecccccccccccCCCc------EEEEeecccChHHHHHcCCCC--ceeecchhHHHHHHHHhCchHHhhhh
Confidence 5555 456677 5888887765443 4554 34456789999999999999988654
Q ss_pred eCCCCceecccccchhhhhc
Q 001485 252 YADGITYGELFLENEKEMSA 271 (1070)
Q Consensus 252 ~~~~~~yg~~~~~~e~e~s~ 271 (1070)
|-+++ |++.|.
T Consensus 350 ------Ypqi~---ew~lSD 360 (536)
T COG2024 350 ------YPQIY---EWRLSD 360 (536)
T ss_pred ------ccccc---ccccch
Confidence 44554 665553
No 58
>TIGR00094 tRNA_TruD_broad tRNA pseudouridine synthase, TruD family. MJ11364 is a strong partial match from 50 to 230 aa.
Probab=49.59 E-value=30 Score=40.79 Aligned_cols=87 Identities=16% Similarity=0.238 Sum_probs=55.5
Q ss_pred CCccCceEEEe------CCeeEEEEEEEecchhHHHHHHHHHHHHHhcCCCCcccccC-CCCcccchhhhHHHhcCC---
Q 001485 483 VPIDSLVTKAA------GKTEYVYARVKETARLALEVLSEDVPSIISKLSFPKSMRWN-SQVMFSRPIRWIMALHGD--- 552 (1070)
Q Consensus 483 v~~~~L~~~~~------~kgeYv~~~~~~~G~~t~evL~eil~~iI~~L~fpKsMRWg-~~~~F~RPIrwIvaL~g~--- 552 (1070)
-+++|..+.|. ++|+|+++...+.|.+|.+++..|-..+ ++| +|.+.|. .+.+.+-=.+|+ ++...
T Consensus 22 ~~peDF~V~E~~~~~~~~~g~~~~~~l~K~~~~T~~a~~~iar~l--~i~-~~~i~yAG~KDk~AvT~Q~~-s~~~~~~~ 97 (387)
T TIGR00094 22 ASPEDFIVEEILGFEPSGEGEFIHIRVEKEGCNTLEVARVLAKFL--GVS-RREIGFAGTKDKRAVTEQWV-CLRVKGEE 97 (387)
T ss_pred cCccceeEEeecCCCCCCCCCEEEEEEEECCcCHHHHHHHHHHHh--CCC-hhheeecccccccceeEEEE-EeccCchh
Confidence 34677766554 4699999999999999999999875554 666 6888885 555555555555 33211
Q ss_pred --ceeeeEEcceeeCCccccccc
Q 001485 553 --VVVPFMFAGVLSGNLSYGLRN 573 (1070)
Q Consensus 553 --~Vvp~~~~gi~Sgn~T~GHRf 573 (1070)
+...+...|++-++..+.+|-
T Consensus 98 ~~~~~~~~~~~~~v~~~~~~~~~ 120 (387)
T TIGR00094 98 EPDLSNFQLKGVKILEYNRHNRK 120 (387)
T ss_pred hhhHhhcccCCcEEEEEEecCCC
Confidence 112234445555555544443
No 59
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=48.75 E-value=9.4 Score=39.67 Aligned_cols=45 Identities=31% Similarity=0.606 Sum_probs=38.2
Q ss_pred cCCCcchHHHHHHHHHhcCCCCCCCceeEecCCCCCCccccccccce-eeecC
Q 001485 155 KPDPGNSQDLFIRSLSALGIDVTEHDIRFVEDNWESPVLGAWGLGWE-IWMDG 206 (1070)
Q Consensus 155 kp~p~~~q~lyl~sl~~~gi~~~~hdirfved~we~p~lga~glgwe-vw~~g 206 (1070)
||+| +.|..-++.+|+++ .++-||+|++ +=..||-..||. ||++-
T Consensus 148 KP~~----~~~~~~~~~~~~~p--~~~~~vgD~~-~Di~~A~~~G~~~i~v~r 193 (198)
T TIGR01428 148 KPAP----QVYQLALEALGVPP--DEVLFVASNP-WDLGGAKKFGFKTAWVNR 193 (198)
T ss_pred CCCH----HHHHHHHHHhCCCh--hhEEEEeCCH-HHHHHHHHCCCcEEEecC
Confidence 8886 57999999999976 5689999999 778999999998 67763
No 60
>PRK04173 glycyl-tRNA synthetase; Provisional
Probab=48.67 E-value=46 Score=40.33 Aligned_cols=128 Identities=23% Similarity=0.370 Sum_probs=81.7
Q ss_pred HHHhhhcC-CCcceEEeecCCCCCCCCCCCCCC-ccccceeee--EEEecCCC-----cchHHHHHHHHHhcCCCCCCCc
Q 001485 110 LTFLRVLG-PEPWNVAYVEPSIRPDDSRYGENP-NRLQRHTQF--QVILKPDP-----GNSQDLFIRSLSALGIDVTEHD 180 (1070)
Q Consensus 110 ~t~~~~l~-~~~~~~ayv~p~~rp~d~ryg~np-nrl~~~~q~--qvi~kp~p-----~~~q~lyl~sl~~~gi~~~~hd 180 (1070)
...+|+-. .=|.++|=+-.|.|-.-+ |-+- -|+..++|- .+.+.|.- ...++++.+=|+.+|+++..--
T Consensus 175 ~~~~~syr~dLPlr~aq~g~~~RnE~s--~~~gL~RvReF~q~e~hiF~~peq~~~e~~~~l~~~~~~l~~lG~~~~~~~ 252 (456)
T PRK04173 175 KNVLRTARKKLPFGIAQIGKSFRNEIT--PRNFIFRTREFEQMELEFFVKPGTDNEWFAYWIELRKNWLLDLGIDPENLR 252 (456)
T ss_pred HHHHHhccccCCeeeeEEchhHhCccC--CCCCceeeceeeeeEEEEEECcChHHHHHHHHHHHHHHHHHHcCCCccceE
Confidence 34567777 679999999999998876 4333 488999885 46677763 3456778888899999753211
Q ss_pred eeE---------ecCCCCCCccccccccc-eee--ecCeee----------eeeehhh-hcCCcccCcceeeehhhhHHH
Q 001485 181 IRF---------VEDNWESPVLGAWGLGW-EIW--MDGMEI----------TQFTYFQ-QAGSLQLSPVSVEITYGLERI 237 (1070)
Q Consensus 181 irf---------ved~we~p~lga~glgw-evw--~~gmei----------tqftyfq-q~gg~~~~~~~~eitygler~ 237 (1070)
++. -.+.|+--.+-.+|.+| |+. .+|-.. -.++|+. ..+|-.-.|+.++.+.|+|||
T Consensus 253 ~s~~~~~e~~~ys~~~wd~e~~~~~g~~~~e~~g~~~~~dydL~~~~~~s~~dl~y~~~~~~~~~~~P~vi~~siGieRl 332 (456)
T PRK04173 253 FREHLPEELAHYSKATWDIEYKFPFGRFWGELEGIANRTDYDLSRHSKHSGEDLSYFDDETTGEKYIPYVIEPSAGLDRL 332 (456)
T ss_pred EEecCcchhhccHHHHHhHHHhCCCCCcEEEEeeeeccchhhcccchhhcCCCeEEEecCCCCceeeeEEEEecccHHHH
Confidence 111 12347766655667778 333 222111 1233432 335556679999999999995
Q ss_pred HH
Q 001485 238 LM 239 (1070)
Q Consensus 238 ~m 239 (1070)
.+
T Consensus 333 ~~ 334 (456)
T PRK04173 333 LL 334 (456)
T ss_pred HH
Confidence 33
No 61
>TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase. This family of archaeal proteins resembles known phenylalanyl-tRNA synthetase alpha chains. Recently, it was shown to act in a proposed pathway of tRNA(Cys) indirect aminoacylation, resulting in Cys biosynthesis from O-phosphoserine, in certain archaea. It charges tRNA(Cys) with O-phosphoserine. The pscS gene product converts the phosphoserine to Cys.
Probab=47.68 E-value=25 Score=42.88 Aligned_cols=124 Identities=16% Similarity=0.306 Sum_probs=75.9
Q ss_pred CCcceEEeecCCCCCCCCCCCCCCccccceeeeEEEe-cC--CCcchHHHHHHHHHhcCCCCCCCceeEecCCCCCCc--
Q 001485 118 PEPWNVAYVEPSIRPDDSRYGENPNRLQRHTQFQVIL-KP--DPGNSQDLFIRSLSALGIDVTEHDIRFVEDNWESPV-- 192 (1070)
Q Consensus 118 ~~~~~~ayv~p~~rp~d~ryg~npnrl~~~~q~qvi~-kp--~p~~~q~lyl~sl~~~gi~~~~hdirfved~we~p~-- 192 (1070)
+-|-++..+--|.|++.. ++++++-.|||.=.++ -+ +-.|+..+--.=|+.+|. -++||..++=.||.
T Consensus 205 ~~PiRIFsIGRVfRrD~~---~DaTHl~eFhQlEGLVVdedVSf~DLKgvLe~LLr~LG~----~~vRFRPsekrskyYF 277 (533)
T TIGR00470 205 KLPLKLFSIDRCFRREQR---EDRSHLMTYHSASCVVVDEEVSVDDGKAVAEGLLAQFGF----TKFRFRPDEKKSKYYI 277 (533)
T ss_pred CCCeEEEeeeeEEecCCC---CCCccCceeeeEEEEEECCCCCHHHHHHHHHHHHHHhCC----ceEEeccCcCCCCCcC
Confidence 679999999999998732 2458899999998544 33 346666666666777885 55888877442221
Q ss_pred ------cccc--c-ccce-eeecCeeeeeeehhhhcCCcccCcceeeehhhhHHHHHHHhCCCceeeeeeC
Q 001485 193 ------LGAW--G-LGWE-IWMDGMEITQFTYFQQAGSLQLSPVSVEITYGLERILMLLQGVDHFKKIQYA 253 (1070)
Q Consensus 193 ------lga~--g-lgwe-vw~~gmeitqftyfqq~gg~~~~~~~~eitygler~~m~~q~~~~~~~~~~~ 253 (1070)
.=++ + -||. |-.=|| |.- +.+. -.|++..-... --|+|||||..-|++++-++.|-
T Consensus 278 PFTEaEVdV~~~k~~gWiEIgG~Gm-VhP-eVL~-~~GId~PV~AF--GIGVERlAMi~ygi~DIR~l~~p 343 (533)
T TIGR00470 278 PETQTEVYAYHPKLGEWIEVATFGV-YSP-IALA-KYNIDVPVMNL--GLGVERLAMILYGYEDVRAMVYP 343 (533)
T ss_pred CCceEEEEEEccCCCceEEEEeccc-cCH-HHHH-HcCCCCceEEE--EecHHHHHHHHhCCcHHHhhccc
Confidence 0011 1 1452 222222 110 1111 23555433333 45999999999999998877654
No 62
>PLN02530 histidine-tRNA ligase
Probab=47.34 E-value=1.7e+02 Score=35.77 Aligned_cols=54 Identities=17% Similarity=0.210 Sum_probs=37.3
Q ss_pred CCcceEEeecCCCCCCCCCCCCCCccccceeee--EEEecCCCc---chHHHHHHHHHhcCCC
Q 001485 118 PEPWNVAYVEPSIRPDDSRYGENPNRLQRHTQF--QVILKPDPG---NSQDLFIRSLSALGID 175 (1070)
Q Consensus 118 ~~~~~~ayv~p~~rp~d~ryg~npnrl~~~~q~--qvi~kp~p~---~~q~lyl~sl~~~gi~ 175 (1070)
+.|.+.+|++|+.|..-. .-.|..+|||. =+|-.+++. .+-.+-.++|+.|||+
T Consensus 162 ~~P~r~~y~g~vfR~e~~----q~gr~REf~Q~giEiiG~~~~~aDaEvi~l~~~~l~~lgl~ 220 (487)
T PLN02530 162 SLPLKWFAIGQCWRYERM----TRGRRREHYQWNMDIIGVPGVEAEAELLAAIVTFFKRVGIT 220 (487)
T ss_pred CCCeEEEEEcCEEcCcCC----CCCCccceEEcCeeEeCCCCcchhHHHHHHHHHHHHHcCCC
Confidence 689999999999884331 11245677884 346677763 3556778899999973
No 63
>PRK09449 dUMP phosphatase; Provisional
Probab=46.03 E-value=13 Score=39.29 Aligned_cols=47 Identities=30% Similarity=0.538 Sum_probs=39.7
Q ss_pred ecCCCcchHHHHHHHHHhcCCCCCCCceeEecCCCCCCccccccccce-eeec
Q 001485 154 LKPDPGNSQDLFIRSLSALGIDVTEHDIRFVEDNWESPVLGAWGLGWE-IWMD 205 (1070)
Q Consensus 154 ~kp~p~~~q~lyl~sl~~~gi~~~~hdirfved~we~p~lga~glgwe-vw~~ 205 (1070)
.||+| +.|..-++.+|+.+. .++-||+|+.++=..||.-.||- ||++
T Consensus 149 ~KP~p----~~~~~~~~~~~~~~~-~~~~~vgD~~~~Di~~A~~aG~~~i~~~ 196 (224)
T PRK09449 149 AKPDV----AIFDYALEQMGNPDR-SRVLMVGDNLHSDILGGINAGIDTCWLN 196 (224)
T ss_pred CCCCH----HHHHHHHHHcCCCCc-ccEEEEcCCcHHHHHHHHHCCCcEEEEC
Confidence 38887 789999999998653 56999999998888999999997 7876
No 64
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=45.68 E-value=17 Score=39.45 Aligned_cols=83 Identities=20% Similarity=0.342 Sum_probs=56.5
Q ss_pred HHhhhcCCCcceEEeecCCCCCCCCCCCCCCccccceeeeEEEe------cCCCcchHHHHHHHHHhcCCCCCCCceeEe
Q 001485 111 TFLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRLQRHTQFQVIL------KPDPGNSQDLFIRSLSALGIDVTEHDIRFV 184 (1070)
Q Consensus 111 t~~~~l~~~~~~~ayv~p~~rp~d~ryg~npnrl~~~~q~qvi~------kp~p~~~q~lyl~sl~~~gi~~~~hdirfv 184 (1070)
.+|..|... .+++-+-.+.+.- +-..|.+|+.+-+.. ||.| +.|+..++.+|+++ +++-+|
T Consensus 120 ~~L~~L~~~-~~l~i~Tn~~~~~------~~~gl~~~fd~i~~~~~~~~~KP~p----~~~~~a~~~~~~~~--~~~~~V 186 (238)
T PRK10748 120 DTLKQLAKK-WPLVAITNGNAQP------ELFGLGDYFEFVLRAGPHGRSKPFS----DMYHLAAEKLNVPI--GEILHV 186 (238)
T ss_pred HHHHHHHcC-CCEEEEECCCchH------HHCCcHHhhceeEecccCCcCCCcH----HHHHHHHHHcCCCh--hHEEEE
Confidence 467777544 6777665433211 113345555443322 7766 57888899999765 679999
Q ss_pred cCCCCCCccccccccce-eeecC
Q 001485 185 EDNWESPVLGAWGLGWE-IWMDG 206 (1070)
Q Consensus 185 ed~we~p~lga~glgwe-vw~~g 206 (1070)
.|++.+=..||--.||- ||++.
T Consensus 187 GD~~~~Di~~A~~aG~~~i~v~~ 209 (238)
T PRK10748 187 GDDLTTDVAGAIRCGMQACWINP 209 (238)
T ss_pred cCCcHHHHHHHHHCCCeEEEEcC
Confidence 99999999999999997 67765
No 65
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=44.39 E-value=14 Score=38.70 Aligned_cols=86 Identities=19% Similarity=0.286 Sum_probs=54.7
Q ss_pred HHHhhhcCCCcceEEeecCCCCCCCCCCCCCCccccceeeeEEE------ecCCCcchHHHHHHHHHhcCCCCCCCceeE
Q 001485 110 LTFLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRLQRHTQFQVI------LKPDPGNSQDLFIRSLSALGIDVTEHDIRF 183 (1070)
Q Consensus 110 ~t~~~~l~~~~~~~ayv~p~~rp~d~ryg~npnrl~~~~q~qvi------~kp~p~~~q~lyl~sl~~~gi~~~~hdirf 183 (1070)
..+|+.|...-++++-+-.+.+..-..+-..-..+..|+..=+. -||+| ++|+.-++.+|+++ .++-|
T Consensus 90 ~e~L~~l~~~g~~~~i~Sn~~~~~~~~~~~~~~~l~~~fd~v~~s~~~~~~KP~p----~~~~~~~~~~~~~p--~~~l~ 163 (199)
T PRK09456 90 IAIMHKLREQGHRVVVLSNTNRLHTTFWPEEYPEVRAAADHIYLSQDLGMRKPEA----RIYQHVLQAEGFSA--ADAVF 163 (199)
T ss_pred HHHHHHHHhCCCcEEEEcCCchhhHHHHHhhchhHHHhcCEEEEecccCCCCCCH----HHHHHHHHHcCCCh--hHeEE
Confidence 34666665555777777665544321111111133333322111 38887 57889999999876 56899
Q ss_pred ecCCCCCCcccccccccee
Q 001485 184 VEDNWESPVLGAWGLGWEI 202 (1070)
Q Consensus 184 ved~we~p~lga~glgwev 202 (1070)
|+|...+ ..+|--.||-+
T Consensus 164 vgD~~~d-i~aA~~aG~~~ 181 (199)
T PRK09456 164 FDDNADN-IEAANALGITS 181 (199)
T ss_pred eCCCHHH-HHHHHHcCCEE
Confidence 9999887 99999999975
No 66
>PF12917 HD_2: HD containing hydrolase-like enzyme ; PDB: 3MZO_B.
Probab=40.17 E-value=36 Score=37.54 Aligned_cols=124 Identities=18% Similarity=0.212 Sum_probs=66.9
Q ss_pred cccCCCCHHHHHHHHHHHHHHHHH---HhCCChhHHHHHHHHH-----HhhhhccccchhhcChhhhHHHHHHHHHhCCC
Q 001485 734 FHEKLGTMLDKTMRVQNMVRKLSL---DLGINEDMLQIVQEAA-----SLAMSDLATSVVMEFTSLAGVMACHYALRDGY 805 (1070)
Q Consensus 734 F~~kLGSl~DK~~RI~~La~~La~---~l~~~~~~~~~~~RAA-----~L~KaDL~T~MV~EFPELQGiMG~~YA~~~GE 805 (1070)
|.-.==|+...+-++..+|..|+. ..|-+.+-....++|. ..---|.-|-+=+-=|+|.-..+.+=....-+
T Consensus 23 fk~~~~nVA~HSf~Va~iA~~Lg~iee~~G~~vd~~~lyekAL~HD~~E~FtGDI~TPVKy~tPelr~~~~~VE~~m~~~ 102 (215)
T PF12917_consen 23 FKFQEHNVAEHSFKVAMIAQFLGDIEEQFGNEVDWKELYEKALNHDYPEIFTGDIKTPVKYATPELREMLAQVEEEMTEN 102 (215)
T ss_dssp --SS--BHHHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHTTGGGGTS----S-SSSS-HHHHHHHHHHHHHHHHH
T ss_pred cCcchhhHHHHHHHHHHHHHHHHHHHHHhCCccCHHHHHHHHhccccHHHHcCCCCCcccccCHHHHHHHHHHHHHHHHH
Confidence 444556899999999999999986 4443322222233332 22334677777777888887776653321100
Q ss_pred --CHHHHHHHHhhcCCCCCCCCCCCcchhhHHHHhhhHHHHHHhhhcCCCCCCCCCh
Q 001485 806 --SQQIAEALLEINLPRFSGDVLPKTDVGTVLAVADRLDTLVGLFAAGCQPSSTNDP 860 (1070)
Q Consensus 806 --~~~VA~AI~EhYlPr~agD~LP~t~~G~iLSlADKlDtLvG~F~iG~~PTGSkDP 860 (1070)
..++-.-..+.|.|+-..+ =-.|..|.+|++|||||.+.=||+ ++=+|..+|
T Consensus 103 ~i~~~iP~e~q~~Y~~~l~E~-KDdt~EG~Iv~~ADkidal~e~~~--Ei~~GN~E~ 156 (215)
T PF12917_consen 103 FIKKEIPEEFQEAYRRRLKEG-KDDTLEGQIVKAADKIDALYECFG--EIQKGNPEK 156 (215)
T ss_dssp HHHHHS-GGGHHHHHHHHS----SSSHHHHHHHHHHHHHHHHHHHH--HHHTT-S-T
T ss_pred HHHhhCCHHHHHHHHHHhhcC-CcccHHHHHHHHHHHHHHHHHHHH--HHHcCCCcH
Confidence 0011112344555555432 224789999999999999999985 667787776
No 67
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=40.17 E-value=15 Score=38.73 Aligned_cols=82 Identities=21% Similarity=0.332 Sum_probs=54.5
Q ss_pred HHHhhhcCCCcceEEeecCCCCCC-C---CCCCCCCccccceeeeEEE------ecCCCcchHHHHHHHHHhcCCCCCCC
Q 001485 110 LTFLRVLGPEPWNVAYVEPSIRPD-D---SRYGENPNRLQRHTQFQVI------LKPDPGNSQDLFIRSLSALGIDVTEH 179 (1070)
Q Consensus 110 ~t~~~~l~~~~~~~ayv~p~~rp~-d---~ryg~npnrl~~~~q~qvi------~kp~p~~~q~lyl~sl~~~gi~~~~h 179 (1070)
..+|..|...-++++=|-.+.+.. . .+.| |..|+.+-+. .||+|. .|+..++.+|+++ .
T Consensus 100 ~~~L~~L~~~g~~~~i~Tn~~~~~~~~~l~~~~-----l~~~f~~i~~~~~~~~~KP~~~----~~~~~~~~~~~~~--~ 168 (221)
T TIGR02253 100 RDTLMELRESGYRLGIITDGLPVKQWEKLERLG-----VRDFFDAVITSEEEGVEKPHPK----IFYAALKRLGVKP--E 168 (221)
T ss_pred HHHHHHHHHCCCEEEEEeCCchHHHHHHHHhCC-----hHHhccEEEEeccCCCCCCCHH----HHHHHHHHcCCCh--h
Confidence 346666655557777666554321 1 1111 3334444332 388775 6889999999876 5
Q ss_pred ceeEecCCCCCCcccccccccee
Q 001485 180 DIRFVEDNWESPVLGAWGLGWEI 202 (1070)
Q Consensus 180 dirfved~we~p~lga~glgwev 202 (1070)
++-+|+|++++=..||--.||-+
T Consensus 169 ~~~~igDs~~~di~~A~~aG~~~ 191 (221)
T TIGR02253 169 EAVMVGDRLDKDIKGAKNLGMKT 191 (221)
T ss_pred hEEEECCChHHHHHHHHHCCCEE
Confidence 69999999999889999889874
No 68
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=39.48 E-value=13 Score=38.20 Aligned_cols=42 Identities=26% Similarity=0.475 Sum_probs=34.1
Q ss_pred ecCCCcchHHHHHHHHHhcCCCCCCCceeEecCCCCCCcccccccccee
Q 001485 154 LKPDPGNSQDLFIRSLSALGIDVTEHDIRFVEDNWESPVLGAWGLGWEI 202 (1070)
Q Consensus 154 ~kp~p~~~q~lyl~sl~~~gi~~~~hdirfved~we~p~lga~glgwev 202 (1070)
.||+| +.|+.-++.+|+++ +++-||+|...+ ..+|.-.|+.+
T Consensus 140 ~KP~p----~~~~~~~~~~~~~~--~~~l~vgD~~~d-i~aA~~~G~~~ 181 (184)
T TIGR01993 140 PKPSP----QAYEKALREAGVDP--ERAIFFDDSARN-IAAAKALGMKT 181 (184)
T ss_pred CCCCH----HHHHHHHHHhCCCc--cceEEEeCCHHH-HHHHHHcCCEE
Confidence 48887 57888899999877 568899999765 78888888864
No 69
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=37.66 E-value=31 Score=38.28 Aligned_cols=105 Identities=21% Similarity=0.329 Sum_probs=68.9
Q ss_pred chHHHHHHHHHHHHhhc-CceeeeccccccccccCCHHHHhhhcCCCcc--eEEeecCCCCCCCCCCCCCCccccceeee
Q 001485 74 PTFQQAIQRLQEYWASV-GCSVMQCSNTEVGAGTMNPLTFLRVLGPEPW--NVAYVEPSIRPDDSRYGENPNRLQRHTQF 150 (1070)
Q Consensus 74 ~~~q~~i~~l~~~w~~~-gc~~~q~~~~e~gagt~~p~t~~~~l~~~~~--~~ayv~p~~rp~d~ryg~npnrl~~~~q~ 150 (1070)
+-.-++++.|.+ + -|+.-..| --|-...|+-||=+-+ .+.|.+-. ||+ -.
T Consensus 103 ~~LRnlLL~l~~----r~k~~FTNa~-------k~HA~r~Lk~LGieDcFegii~~e~~----------np~------~~ 155 (244)
T KOG3109|consen 103 PVLRNLLLSLKK----RRKWIFTNAY-------KVHAIRILKKLGIEDCFEGIICFETL----------NPI------EK 155 (244)
T ss_pred HHHHHHHHhCcc----ccEEEecCCc-------HHHHHHHHHHhChHHhccceeEeecc----------CCC------CC
Confidence 445666666642 2 33333333 2366777777777654 23333321 233 57
Q ss_pred EEEecCCCcchHHHHHHHHHhcCCCCCCCceeEecCCCCCCccccccccceeeecCeeeee
Q 001485 151 QVILKPDPGNSQDLFIRSLSALGIDVTEHDIRFVEDNWESPVLGAWGLGWEIWMDGMEITQ 211 (1070)
Q Consensus 151 qvi~kp~p~~~q~lyl~sl~~~gi~~~~hdirfved~we~p~lga~glgwevw~~gmeitq 211 (1070)
+||+||+|+ -|=...+..||+-- +..-|++|+-.| ..+|--+||--|+=|.|--|
T Consensus 156 ~~vcKP~~~----afE~a~k~agi~~p-~~t~FfDDS~~N-I~~ak~vGl~tvlv~~~~~~ 210 (244)
T KOG3109|consen 156 TVVCKPSEE----AFEKAMKVAGIDSP-RNTYFFDDSERN-IQTAKEVGLKTVLVGREHKI 210 (244)
T ss_pred ceeecCCHH----HHHHHHHHhCCCCc-CceEEEcCchhh-HHHHHhccceeEEEEeeecc
Confidence 899999985 45667888999833 337899888555 77889999999999998764
No 70
>PF09113 N-glycanase_C: Peptide-N-glycosidase F, C terminal; InterPro: IPR015197 This domain adopts an eight-stranded antiparallel beta jelly roll configuration, with the beta strands arranged into two sheets. It is similar in topology to many viral capsid proteins, as well as lectins and several glucanases. This domain allows the protein to bind sugars and catalyses the complete removal of N-linked oligosaccharide chains from glycoproteins []. ; PDB: 1PNF_A 1PNG_A 1PGS_A 3KS7_D 3PMS_A.
Probab=37.16 E-value=14 Score=38.20 Aligned_cols=23 Identities=26% Similarity=0.595 Sum_probs=15.3
Q ss_pred CCCCc-cccccccceeeecCeeee
Q 001485 188 WESPV-LGAWGLGWEIWMDGMEIT 210 (1070)
Q Consensus 188 we~p~-lga~glgwevw~~gmeit 210 (1070)
.++|+ -|.|.+|+.=||+||.|.
T Consensus 73 ~~n~~p~G~w~~~Rs~WCPG~~v~ 96 (141)
T PF09113_consen 73 LYNPAPSGTWLYSRSNWCPGMVVD 96 (141)
T ss_dssp GG-TTT-SCESS-BSS--TTEEE-
T ss_pred ccCccccceEecCCCCCCCCCCCC
Confidence 45777 699999999999999983
No 71
>PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry includes the asparagine, aspartic acid and lysine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1N9W_B 1BBU_A 1BBW_A 4EX5_B 3E9I_A 3E9H_C 3A74_C 1NNH_A 3M4P_C 3M4Q_B ....
Probab=36.74 E-value=24 Score=40.47 Aligned_cols=57 Identities=25% Similarity=0.449 Sum_probs=43.1
Q ss_pred cccccceeeecCeeee-----------eeehhhhcCCc--c-------------c-CcceeeehhhhHHHHHHHhCCCce
Q 001485 195 AWGLGWEIWMDGMEIT-----------QFTYFQQAGSL--Q-------------L-SPVSVEITYGLERILMLLQGVDHF 247 (1070)
Q Consensus 195 a~glgwevw~~gmeit-----------qftyfqq~gg~--~-------------~-~~~~~eitygler~~m~~q~~~~~ 247 (1070)
.+.-.||+-++|+||. |-.-|+..|=. + . -|.++=+.-|+|||.|++=|.+||
T Consensus 245 ~~~~~fdl~~~g~Ei~~G~~r~~d~~~l~~r~~~~~~~~~~~~~~~~~yl~~~~~G~pp~~G~glG~eRLvm~l~g~~~I 324 (335)
T PF00152_consen 245 GVAERFDLYIPGGEIANGSQREHDPEELRERFEEQGIDPEEEMPIDEWYLEALKYGMPPHGGFGLGLERLVMLLLGLKNI 324 (335)
T ss_dssp TBBSEEEEEETTEEEEEEEEB--SHHHHHHHHHHTTHHGGGSHHHGHHHHHHHHTT--SEEEEEEEHHHHHHHHHT-SSG
T ss_pred ccccceeEEEeCEEEehHHhhhhHHHHHHHHhhhcccccccccchhHhHHHhhhccCcccCcceehHHHHHHHHcCCCcH
Confidence 5788999999999997 55666655421 1 1 477777889999999999999999
Q ss_pred eeee
Q 001485 248 KKIQ 251 (1070)
Q Consensus 248 ~~~~ 251 (1070)
.|+.
T Consensus 325 rdv~ 328 (335)
T PF00152_consen 325 RDVI 328 (335)
T ss_dssp GGGS
T ss_pred Hhee
Confidence 9874
No 72
>PF10847 DUF2656: Protein of unknown function (DUF2656); InterPro: IPR020325 This entry contains uncharacterised proteins from the cpeY 3'-region. They have no known function, but are found in the phycobilisome.
Probab=34.61 E-value=55 Score=33.52 Aligned_cols=59 Identities=24% Similarity=0.401 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCC-------ccCCCCCCCCCChhhHHhhhcC------CC-CCccchhhhhcccCCCh
Q 001485 337 MRSLARQCAQLWLKTRKSLGHPL-------GIVSEPVDLPCPKELLEAAVKK------LP-DDPRLFVLEIGTEEMPP 400 (1070)
Q Consensus 337 ~r~l~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~------~~-~~~~~lLlEIGtEELPa 400 (1070)
-++||+.|+++|.+.|..+|+.. |..+..++.+.++ ..++ ++ ..+..||-+|+=|.+-+
T Consensus 55 p~~~~~~~v~aw~~~R~~~g~~~~h~ilaLGGrKds~a~p~sP-----LQ~G~WGVDVVEt~d~~~FL~aInWeal~a 127 (132)
T PF10847_consen 55 PDEMAEELVRAWKQYRNSLGHSMNHDILALGGRKDSPASPGSP-----LQEGEWGVDVVETADPDAFLQAINWEALKA 127 (132)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCccchhhhhccccCCCCCCCCC-----CccCccceeEEecCCHHHHHHHcChhhhcc
Confidence 47789999999999999999864 3222211111111 1222 22 33578999998887643
No 73
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=33.52 E-value=22 Score=37.07 Aligned_cols=43 Identities=30% Similarity=0.575 Sum_probs=36.7
Q ss_pred ecCCCcchHHHHHHHHHhcCCCCCCCceeEecCCCCCCcccccccccee
Q 001485 154 LKPDPGNSQDLFIRSLSALGIDVTEHDIRFVEDNWESPVLGAWGLGWEI 202 (1070)
Q Consensus 154 ~kp~p~~~q~lyl~sl~~~gi~~~~hdirfved~we~p~lga~glgwev 202 (1070)
-||+| ++|..-++.+|+++ .++-+|+|++++=..+|--.||-+
T Consensus 159 ~KP~~----~~~~~~~~~~~~~~--~~~~~IgD~~~~Di~~A~~aG~~~ 201 (203)
T TIGR02252 159 EKPDP----KIFQEALERAGISP--EEALHIGDSLRNDYQGARAAGWRA 201 (203)
T ss_pred CCCCH----HHHHHHHHHcCCCh--hHEEEECCCchHHHHHHHHcCCee
Confidence 39988 78999999999876 569999999988888998888864
No 74
>PF10490 CENP-F_C_Rb_bdg: Rb-binding domain of kinetochore protein Cenp-F/LEK1; InterPro: IPR018302 This entry represents the Rb protein-binding domain from the centromere protein Cenp-F. Cenp-F is a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, that is involved in chromosome segregation during mitosis and is essential for the full functioning of the mitotic checkpoint pathway [, ]. Cenp-F interacts with retinoblastoma protein (RB), CENP-E and BUBR1. This domain is at the very C terminus of the C-terminal coiled-coil region, and binds to the Rb family of tumour suppressors [].
Probab=32.38 E-value=11 Score=32.02 Aligned_cols=18 Identities=28% Similarity=0.528 Sum_probs=16.0
Q ss_pred CCCCCCCChhhhhHhHHH
Q 001485 852 CQPSSTNDPFGLRRISYG 869 (1070)
Q Consensus 852 ~~PTGSkDPfALRRaAlG 869 (1070)
-+|||..-||-|||..++
T Consensus 27 DIPtgk~sPyilRRtt~~ 44 (49)
T PF10490_consen 27 DIPTGKTSPYILRRTTLA 44 (49)
T ss_pred cCCCCCCCceEEEeeccc
Confidence 589999999999998764
No 75
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=29.83 E-value=3.2e+02 Score=32.30 Aligned_cols=166 Identities=22% Similarity=0.350 Sum_probs=98.6
Q ss_pred hHHHHHHHHHHHHhhcCceeeeccccc--------cccccCCHH-----HH----------------hhhc--CCCcceE
Q 001485 75 TFQQAIQRLQEYWASVGCSVMQCSNTE--------VGAGTMNPL-----TF----------------LRVL--GPEPWNV 123 (1070)
Q Consensus 75 ~~q~~i~~l~~~w~~~gc~~~q~~~~e--------~gagt~~p~-----t~----------------~~~l--~~~~~~~ 123 (1070)
-.+.++..+.++....|..+...+.+| ++-.--||+ || +|.| ++.|+++
T Consensus 109 Pl~~~~~~Ir~if~~mGF~ev~gpeIes~~~NFdaLn~P~dHPaR~~~DTfyI~~~~lLRThTSp~qir~L~~~~~Piri 188 (339)
T PRK00488 109 PITQTIEEIEDIFVGMGFEVAEGPEIETDYYNFEALNIPKDHPARDMQDTFYIDDGLLLRTHTSPVQIRTMEKQKPPIRI 188 (339)
T ss_pred HHHHHHHHHHHHHHhCCCEEEeCCccccHHHHHHHhCCCCCCcccccCceEEEcCCceeeccCcHHHHHHHHhcCCCeEE
Confidence 378889999999999999998876665 344444564 22 3334 6789999
Q ss_pred EeecCCCCCCCCCCCCCCccccceeeeEEEe-c--CCCcchHHHHHHHHHhc-CCCCCCCceeEecC-------CCCCCc
Q 001485 124 AYVEPSIRPDDSRYGENPNRLQRHTQFQVIL-K--PDPGNSQDLFIRSLSAL-GIDVTEHDIRFVED-------NWESPV 192 (1070)
Q Consensus 124 ayv~p~~rp~d~ryg~npnrl~~~~q~qvi~-k--p~p~~~q~lyl~sl~~~-gi~~~~hdirfved-------~we~p~ 192 (1070)
..+-.+.|.++- +..+.-.+||.=.++ - -+-.+++..--.-++.+ | ....+||.-+ -+|==.
T Consensus 189 f~~G~VyR~D~~----DatH~~~FhQleglvvd~~vtf~dLK~~L~~fl~~~fg---~~~~~R~rpsyFPFTePS~Evdv 261 (339)
T PRK00488 189 IAPGRVYRNDSD----DATHSPMFHQVEGLVVDKNISFADLKGTLEDFLKAFFG---EDVKIRFRPSYFPFTEPSAEVDV 261 (339)
T ss_pred EEeeeEEEcCCC----CcccCcceeeEEEEEEeCCCCHHHHHHHHHHHHHHHcC---CCCeEEecCCCCCCCCCceEEEE
Confidence 999999887752 346677888887433 2 23333443333344555 5 3355775432 222111
Q ss_pred ----cc------cccccc-eeeecCeeeeeeehhhhcCCcccCccee-eehhhhHHHHHHHhCCCceeee
Q 001485 193 ----LG------AWGLGW-EIWMDGMEITQFTYFQQAGSLQLSPVSV-EITYGLERILMLLQGVDHFKKI 250 (1070)
Q Consensus 193 ----lg------a~glgw-evw~~gmeitqftyfqq~gg~~~~~~~~-eitygler~~m~~q~~~~~~~~ 250 (1070)
-| .-|.|| ||-==|| -.=..+. .+|++.+-.++ =.--|||||||..-|++++-++
T Consensus 262 ~~~~~~g~gc~~ck~~~WiEilG~Gm--v~p~vl~-~~gid~~~~~G~AfG~GleRlaMl~ygi~DiR~~ 328 (339)
T PRK00488 262 SCFKCGGKGCRVCKGTGWLEILGCGM--VHPNVLR-NVGIDPEEYSGFAFGMGIERLAMLKYGIDDIRLF 328 (339)
T ss_pred EEeccCCCcccccCCCCceEEeccCc--cCHHHHH-HcCCCcccceEEEEeecHHHHHHHHhCCcHHHHH
Confidence 11 125677 2222244 1112233 44566554444 3457999999999998887654
No 76
>KOG1576 consensus Predicted oxidoreductase [Energy production and conversion]
Probab=28.23 E-value=29 Score=39.59 Aligned_cols=66 Identities=23% Similarity=0.302 Sum_probs=48.1
Q ss_pred hcCCCcceEEeecCCCCCCCCCCCCCCccccceeeeEEEecCCCcchHHHHHHHHHhcCCCC----CCCceeEe--cCCC
Q 001485 115 VLGPEPWNVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIRSLSALGIDV----TEHDIRFV--EDNW 188 (1070)
Q Consensus 115 ~l~~~~~~~ayv~p~~rp~d~ryg~npnrl~~~~q~qvi~kp~p~~~q~lyl~sl~~~gi~~----~~hdirfv--ed~w 188 (1070)
+|..=|-..-|+-- .=||||..|+|+..| |.+-+-+---+|||.|+.|- .-|||-|+ +|-=
T Consensus 89 al~~vPR~aYyIaT----KvgRy~ld~~~~Fdf---------sadkvreSv~rSlerLqldyvDilqiHDvefap~ld~v 155 (342)
T KOG1576|consen 89 ALKDVPREAYYIAT----KVGRYELDYANMFDF---------SADKVRESVKRSLERLQLDYVDILQIHDVEFAPNLDIV 155 (342)
T ss_pred HHhhCChhheeeee----eeeecccCccccccc---------hHHHHHHHHHHHHHHhCCceeEEEEeecccccccccHH
Confidence 34445555556543 349999999999888 56778888899999999884 57999998 5543
Q ss_pred CCCcc
Q 001485 189 ESPVL 193 (1070)
Q Consensus 189 e~p~l 193 (1070)
=|-||
T Consensus 156 l~Etl 160 (342)
T KOG1576|consen 156 LNETL 160 (342)
T ss_pred HHHHH
Confidence 34443
No 77
>PF06275 DUF1031: Protein of unknown function (DUF1031); InterPro: IPR009376 This entry is represented by Bacteriophage r1t, Orf16. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=27.54 E-value=1e+02 Score=28.68 Aligned_cols=55 Identities=22% Similarity=0.272 Sum_probs=37.6
Q ss_pred CcHHHHHHHHHCCCCccCceEEEeCCeeEEEEEEEecchhHHHHHHHHHHHHHhcCCCCcccccC
Q 001485 470 PTKAVEGFCQRYAVPIDSLVTKAAGKTEYVYARVKETARLALEVLSEDVPSIISKLSFPKSMRWN 534 (1070)
Q Consensus 470 pTkAa~GFak~~Gv~~~~L~~~~~~kgeYv~~~~~~~G~~t~evL~eil~~iI~~L~fpKsMRWg 534 (1070)
|++-+-|.||+++-++.. |.-=|++..+.+| ..-|.++-.++-...+-.|.|.|+
T Consensus 8 tlkKL~gLA~nnnf~~~~-------ke~SV~Is~RTK~---nHELsqlYlDI~nkyNhsKqMkW~ 62 (80)
T PF06275_consen 8 TLKKLYGLARNNNFNVNH-------KELSVKISGRTKH---NHELSQLYLDICNKYNHSKQMKWN 62 (80)
T ss_pred hHHHHHHHHHhccCCCCC-------cceeEEEEeeecc---cHhHHHHHHHHHHhhcccccCcHH
Confidence 889999999999877532 1112233333333 245677777888889999999998
No 78
>cd02575 PseudoU_synth_EcTruD PseudoU_synth_EcTruD: Pseudouridine synthase, TruD family. This group consists of bacterial pseudouridine synthases similar to Escherichia coli TruD. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). E. coli TruD makes the highly phylogenetically conserved psi13 in tRNAs.
Probab=26.76 E-value=1e+02 Score=34.79 Aligned_cols=60 Identities=12% Similarity=0.234 Sum_probs=42.8
Q ss_pred CccCceEEEe------CCeeEEEEEEEecchhHHHHHHHHHHHHHhcCCCCcccccC-CCCcccchhhhH
Q 001485 484 PIDSLVTKAA------GKTEYVYARVKETARLALEVLSEDVPSIISKLSFPKSMRWN-SQVMFSRPIRWI 546 (1070)
Q Consensus 484 ~~~~L~~~~~------~kgeYv~~~~~~~G~~t~evL~eil~~iI~~L~fpKsMRWg-~~~~F~RPIrwI 546 (1070)
+++|..+.|. ++|+|+++..++.|.+|.+++..+-..+ +++ +|.+-|. .+.+.+-=.+|+
T Consensus 6 ~peDF~V~Ei~~~~~~g~Ge~l~~~l~K~~~~T~~ai~~LAr~l--gi~-~~~igyAGlKDk~AvT~Q~~ 72 (253)
T cd02575 6 TPEDFQVEEVLGYEPSGEGEHLLLHIRKTGLNTREVAKELAKAL--GVK-ERDVGYAGLKDRHAVTTQWF 72 (253)
T ss_pred CCcccEEEeecCCCcCCCCCEEEEEEEECCCCHHHHHHHHHHHh--CCC-hhheeecccccCceeeEEEE
Confidence 4666655553 5799999999999999999998875444 565 5888885 455554444444
No 79
>PLN02563 aminoacyl-tRNA ligase
Probab=26.53 E-value=80 Score=41.88 Aligned_cols=25 Identities=16% Similarity=0.332 Sum_probs=20.3
Q ss_pred ccCCCcchHHHHHHHHHHHHhhcCc
Q 001485 68 RQKASVPTFQQAIQRLQEYWASVGC 92 (1070)
Q Consensus 68 ~~~~~~~~~q~~i~~l~~~w~~~gc 92 (1070)
++.....+|+++=.+.|+||.+.+.
T Consensus 74 ~~~~~~y~~~~iE~kwq~~W~e~~~ 98 (963)
T PLN02563 74 PAAKRAYPFHEIEPKWQRYWEENRT 98 (963)
T ss_pred cccCCCCCHHHHHHHHHHHHHhCCC
Confidence 4445557899999999999998873
No 80
>TIGR00468 pheS phenylalanyl-tRNA synthetase, alpha subunit. Most phenylalanyl-tRNA synthetases are heterodimeric, with 2 alpha (pheS) and 2 beta (pheT) subunits. This model describes the alpha subunit, which shows some similarity to class II aminoacyl-tRNA ligases. Mitochondrial phenylalanyl-tRNA synthetase is a single polypeptide chain, active as a monomer, and similar to this chain rather than to the beta chain, but excluded from this model. An interesting feature of the alignment of all sequences captured by this model is a deep split between non-spirochete bacterial examples and all other examples; supporting this split is a relative deletion of about 50 residues in the former set between two motifs well conserved throughout the alignment.
Probab=26.32 E-value=1e+03 Score=27.27 Aligned_cols=162 Identities=17% Similarity=0.301 Sum_probs=90.1
Q ss_pred hHHHHHHHHHHHHhhcCceeeeccccccc--------cccCCHHH---------------------HhhhcCC---Ccce
Q 001485 75 TFQQAIQRLQEYWASVGCSVMQCSNTEVG--------AGTMNPLT---------------------FLRVLGP---EPWN 122 (1070)
Q Consensus 75 ~~q~~i~~l~~~w~~~gc~~~q~~~~e~g--------agt~~p~t---------------------~~~~l~~---~~~~ 122 (1070)
..|.++.++.+.-...|......|..+-- -..-||+. .++++-. .|.+
T Consensus 73 p~~~~~~~ir~~l~~~Gf~Ev~~~~~~s~~~~fd~l~~~~~hpar~~~d~~~l~d~~vLRtsl~p~ll~~l~~N~~~pir 152 (294)
T TIGR00468 73 PLTRVIDEIRDIFLGLGFTEEKGPEVETDFWNFDALNIPQDHPARDMQDTFYIKDRLLLRTHTTAVQLRTMEENEKPPIR 152 (294)
T ss_pred HHHHHHHHHHHHHHHCCCEEeeCCceeccHHHHHHhCCCCCCcchhhccceeecCCcceecccHHHHHHHHHhcCCCCce
Confidence 36888899999999999998887776543 12223321 2333322 6788
Q ss_pred EEeecCCCCCCCCCCCCCCccccceeeeEEEecCCCcchHHH--HHHH-HHhcCCCCCCCceeEecCCCC--CCcccccc
Q 001485 123 VAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDL--FIRS-LSALGIDVTEHDIRFVEDNWE--SPVLGAWG 197 (1070)
Q Consensus 123 ~ayv~p~~rp~d~ryg~npnrl~~~~q~qvi~kp~p~~~q~l--yl~s-l~~~gi~~~~hdirfved~we--~p~lga~g 197 (1070)
+.-+-.+.||++- +..++-.++|.=.+.--..-++-+| .+++ |+.+|++ -.+||...... .|+.-|.
T Consensus 153 lFEiGrVfr~d~~----d~~~~pef~ql~gl~~~~~~~f~dLKg~le~ll~~l~~~---~~~~~~~~~~p~~~Ps~e~~- 224 (294)
T TIGR00468 153 IFSPGRVFRNDTV----DATHLPEFHQVEGLVIDKNVSFTNLKGFLEEFLKKMFGE---TEIRFRPSYFPFTEPSAEID- 224 (294)
T ss_pred EEEecceEEcCCC----CCccCChhhEEEEEEECCCCCHHHHHHHHHHHHHHhCCC---cceeeccCCCCCCCCCEEEE-
Confidence 8888888888531 1122224445433332122344444 4444 4788875 26788654432 4444332
Q ss_pred ccceeee-cCe---eeeeeehh----hhcCCccc--CcceeeehhhhHHHHHHHhCCCceeee
Q 001485 198 LGWEIWM-DGM---EITQFTYF----QQAGSLQL--SPVSVEITYGLERILMLLQGVDHFKKI 250 (1070)
Q Consensus 198 lgwevw~-~gm---eitqftyf----qq~gg~~~--~~~~~eitygler~~m~~q~~~~~~~~ 250 (1070)
|+| +|. ||--+--+ .+-.|++- .-...| -|||||||..=|++++-++
T Consensus 225 ----i~~~~g~~w~eiG~~G~vhP~Vl~~~gi~~~~~v~afe--l~lerl~m~~~~i~dir~~ 281 (294)
T TIGR00468 225 ----VYCWEGKTWLEVLGAGMFRPEVLEPMGIDPTYPGFAWG--IGIERLAMLKYGIDDIRDL 281 (294)
T ss_pred ----EEEeCCCccEEEEEeccCcHHHHHHCCCCCCCeEEEEE--eeHHHHHHHHhCCcHHHHH
Confidence 233 343 44422211 12234544 223445 4899999998888887654
No 81
>TIGR00457 asnS asparaginyl-tRNA synthetase. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, asnS, represents asparaginyl-tRNA synthetases from the three domains of life. Some species lack this enzyme and charge tRNA(asn) by misacylation with Asp, followed by transamidation of Asp to Asn.
Probab=25.90 E-value=29 Score=42.02 Aligned_cols=19 Identities=26% Similarity=0.695 Sum_probs=16.6
Q ss_pred hhHHHHHHHhCCCceeeee
Q 001485 233 GLERILMLLQGVDHFKKIQ 251 (1070)
Q Consensus 233 gler~~m~~q~~~~~~~~~ 251 (1070)
|+||+.|++=|.+||.|..
T Consensus 424 GieRlvm~l~g~~~Irdv~ 442 (453)
T TIGR00457 424 GFERLLAYITGLENIRDAI 442 (453)
T ss_pred hHHHHHHHHhCCCcHhhhc
Confidence 4599999999999998863
No 82
>cd02552 PseudoU_synth_TruD_like PseudoU_synth_TruD_like: Pseudouridine synthase, TruD family. This group consists of eukaryotic, bacterial and archeal pseudouridine synthases similar to Escherichia coli TruD and Saccharomyces cerevisiae Pus7. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). E. coli TruD and S. cerevisiae Pus7 make psi13 in cytoplasmic tRNAs. In addition S. cerevisiae Pus7 makes psi35 in U2 small nuclear RNA (U2 snRNA) and psi35 in pre-tRNATyr. Psi35 in U2 snRNA and psi13 in tRNAs are highly phylogenetically conserved. Psi34 is the mammalian U2 snRNA counterpart of yeast U2 snRNA psi35.
Probab=25.26 E-value=1.2e+02 Score=33.82 Aligned_cols=49 Identities=14% Similarity=0.272 Sum_probs=36.2
Q ss_pred CCeeEEEEEEEecchhHHHHHHHHHHHHHhcCCCCcccccC-CCCcccchhhh
Q 001485 494 GKTEYVYARVKETARLALEVLSEDVPSIISKLSFPKSMRWN-SQVMFSRPIRW 545 (1070)
Q Consensus 494 ~kgeYv~~~~~~~G~~t~evL~eil~~iI~~L~fpKsMRWg-~~~~F~RPIrw 545 (1070)
++|+|+++...+.|.+|.+++..+-..+ +++ ||.+.|. .+.+-+-=.+|
T Consensus 28 ~~G~~~~~~l~K~~~~T~~a~~~la~~l--~i~-~~~i~yAG~KDk~AvT~Q~ 77 (232)
T cd02552 28 GEGEYLHFTLYKENKDTMEALREIAKAL--GVP-PRDIGYAGTKDKRAVTTQR 77 (232)
T ss_pred CCCCEEEEEEEECCCCHHHHHHHHHHHc--CCC-HHHEeEcccccCceeeEEE
Confidence 6899999999999999999999875544 666 7878885 44443333333
No 83
>PF06159 DUF974: Protein of unknown function (DUF974); InterPro: IPR010378 This is a family of uncharacterised eukaryotic proteins.
Probab=24.17 E-value=53 Score=36.71 Aligned_cols=30 Identities=27% Similarity=0.589 Sum_probs=24.3
Q ss_pred cceEEeecCCCCCCCCCCCCCCccccceeeeEEEecC
Q 001485 120 PWNVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKP 156 (1070)
Q Consensus 120 ~~~~ayv~p~~rp~d~ryg~npnrl~~~~q~qvi~kp 156 (1070)
-+.|.|..|. ++||| +-.+..+||||| .||
T Consensus 86 ~c~VsY~~~~--~~~g~----~~tfRK~ykF~v-~~P 115 (249)
T PF06159_consen 86 VCTVSYTDPT--ETSGE----RRTFRKFYKFQV-LNP 115 (249)
T ss_pred EEEEEEecCc--ccCCc----cceEeeeeEEeC-CCC
Confidence 3779999997 66775 688999999999 555
No 84
>PRK00984 truD tRNA pseudouridine synthase D; Reviewed
Probab=24.04 E-value=1.1e+02 Score=35.84 Aligned_cols=61 Identities=13% Similarity=0.233 Sum_probs=44.3
Q ss_pred CccCceEEE------eCCeeEEEEEEEecchhHHHHHHHHHHHHHhcCCCCcccccC-CCCcccchhhhHH
Q 001485 484 PIDSLVTKA------AGKTEYVYARVKETARLALEVLSEDVPSIISKLSFPKSMRWN-SQVMFSRPIRWIM 547 (1070)
Q Consensus 484 ~~~~L~~~~------~~kgeYv~~~~~~~G~~t~evL~eil~~iI~~L~fpKsMRWg-~~~~F~RPIrwIv 547 (1070)
+++|..+.| .++|+|+++...+.|.+|.+++..+-..+ +++ +|.+-|. .+.+.+-=.+|+.
T Consensus 23 ~peDF~V~E~~~~~~~~~G~~~~~~l~K~~~~T~~~~~~lar~l--~i~-~~~i~yAG~KDk~AvT~Q~~s 90 (341)
T PRK00984 23 NPEDFVVREILGFEPSGEGEHLLVRIRKRGWNTLFVARALAKFL--GIS-LRDVGYAGLKDRHAVTTQWFS 90 (341)
T ss_pred CccceeEEeccCCCCCCCcCEEEEEEEECCCCHHHHHHHHHHHh--CCC-hhheeecccCcCCeeeEEEEE
Confidence 366766555 35899999999999999999998875554 666 7888885 5555555555543
No 85
>TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_arch, represents aspartyl-tRNA synthetases from the eukaryotic cytosol and from the Archaea. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn).
Probab=23.63 E-value=41 Score=40.40 Aligned_cols=55 Identities=24% Similarity=0.531 Sum_probs=37.4
Q ss_pred HHHHHHhcCCCCCCCceeEecC-CCCCCccccccccceeeecCeeeeeeehhhhcCCcccCcceeeehhhhHHHHHHHhC
Q 001485 165 FIRSLSALGIDVTEHDIRFVED-NWESPVLGAWGLGWEIWMDGMEITQFTYFQQAGSLQLSPVSVEITYGLERILMLLQG 243 (1070)
Q Consensus 165 yl~sl~~~gi~~~~hdirfved-~we~p~lga~glgwevw~~gmeitqftyfqq~gg~~~~~~~~eitygler~~m~~q~ 243 (1070)
..+.++..|+|+. .|=.|++- .|-.|--|-|||| +|||.|++=|
T Consensus 365 l~~~~~~~g~~~~-~~~~yl~a~~~G~pP~~G~GiG----------------------------------idRL~m~l~g 409 (428)
T TIGR00458 365 LVERIKAKGLNPE-GFKDYLEAFSYGMPPHAGWGLG----------------------------------AERFVMFLLG 409 (428)
T ss_pred HHHHHHHcCCChH-HHHHHHHHHHCCCCCcCceeec----------------------------------HHHHHHHHcC
Confidence 4555677787764 33334433 3445666666655 5999999999
Q ss_pred CCceeeeeeCC
Q 001485 244 VDHFKKIQYAD 254 (1070)
Q Consensus 244 ~~~~~~~~~~~ 254 (1070)
.+||.|+.+-+
T Consensus 410 ~~~Irdv~~FP 420 (428)
T TIGR00458 410 LKNIREAVLFP 420 (428)
T ss_pred CCchheEEecc
Confidence 99999987753
No 86
>PRK13480 3'-5' exoribonuclease YhaM; Provisional
Probab=23.12 E-value=5.3e+02 Score=30.11 Aligned_cols=113 Identities=12% Similarity=0.101 Sum_probs=73.8
Q ss_pred ccccCCCCHHHHHHHHHHHHHHHHHHhC-CChhHHHHHHHHHHhh---hhccccc-hhhcChhhhHH------HHH----
Q 001485 733 LFHEKLGTMLDKTMRVQNMVRKLSLDLG-INEDMLQIVQEAASLA---MSDLATS-VVMEFTSLAGV------MAC---- 797 (1070)
Q Consensus 733 vF~~kLGSl~DK~~RI~~La~~La~~l~-~~~~~~~~~~RAA~L~---KaDL~T~-MV~EFPELQGi------MG~---- 797 (1070)
.=|.-.|=+++.+--+.++|..+|.... ++. +.+.-+|.|. |.+=.+. ...||+. .|- ||.
T Consensus 152 ~HHay~GGLleHtl~v~~~~~~l~~~y~~~n~---dll~agalLHDiGKi~E~~~~~~~~yT~-eG~LlGHi~lg~~~i~ 227 (314)
T PRK13480 152 NHHEFVSGLAYHVVSMLRLAKSICDLYPSLNK---DLLYAGIILHDLGKVIELSGPVSTTYTL-EGNLLGHISIMVNEIA 227 (314)
T ss_pred cccccccHHHHHHHHHHHHHHHHHHhccccCH---HHHHHHHHHHHhhhHHHhcCCCccCccc-cCEeccHHHHHHHHHH
Confidence 3477899999999999999999998753 332 3355555554 3332221 3345553 443 232
Q ss_pred HHHHhCCCCHHHHHHH-----HhhcCCCCCCCCCCCcchhhHHHHhhhHHHHHHhhh
Q 001485 798 HYALRDGYSQQIAEAL-----LEINLPRFSGDVLPKTDVGTVLAVADRLDTLVGLFA 849 (1070)
Q Consensus 798 ~YA~~~GE~~~VA~AI-----~EhYlPr~agD~LP~t~~G~iLSlADKlDtLvG~F~ 849 (1070)
.+|..-|-+++....+ .-|-.+-+-.-..|.|+.+.+|..||.||.=+..|.
T Consensus 228 ~~~~~l~~~~e~~~~L~H~ILSHHG~~E~GSPv~P~t~EA~iLh~~D~lDAkl~~~~ 284 (314)
T PRK13480 228 KAADELQIDGEEVLILQHMVLSHHGKAEWGSPKPPLVKEAEILHYIDNIDAKMNMMD 284 (314)
T ss_pred HHHHHcCCCHHHHHHHHhhhhccCCccccCCCCCCCCHHHHHHHHHHhhhhHHHHHH
Confidence 2244445556655443 234455555567999999999999999999998884
No 87
>cd02577 PSTD1 PSTD1: Pseudouridine synthase, a subgroup of the TruD family. This group consists of several hypothetical archeal pseudouridine synthases assigned to the TruD family of psuedouridine synthases. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). The TruD family is comprised of proteins related to Escherichia coli TruD.
Probab=23.09 E-value=1.5e+02 Score=34.56 Aligned_cols=61 Identities=10% Similarity=0.187 Sum_probs=44.2
Q ss_pred CccCceEEEe------CCeeEEEEEEEecchhHHHHHHHHHHHHHhcCCCCcccccC-CCCcccchhhhHH
Q 001485 484 PIDSLVTKAA------GKTEYVYARVKETARLALEVLSEDVPSIISKLSFPKSMRWN-SQVMFSRPIRWIM 547 (1070)
Q Consensus 484 ~~~~L~~~~~------~kgeYv~~~~~~~G~~t~evL~eil~~iI~~L~fpKsMRWg-~~~~F~RPIrwIv 547 (1070)
.++|..+.|. ++|+|+.+...+.+.+|.+++..+-..+ +++ ++.+.|. .+.+.+-=.+|+.
T Consensus 6 ~peDF~V~Ei~~~~~~~~g~y~~f~l~K~n~dT~~ai~~lar~l--~i~-~~~i~~AG~KDk~AvT~Q~vs 73 (319)
T cd02577 6 YPEDFIVEEITPFDIGKKGKYLIYLLEKKNWDTLDAVRRIAKAL--GIS-RKRIGYAGTKDKHAVTTQYIS 73 (319)
T ss_pred CCCceEEEEecCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHh--CCC-hhheeeccccccccceEEEEE
Confidence 4666665554 4899999999999999999999875555 666 7888885 4555444444443
No 88
>TIGR00418 thrS threonyl-tRNA synthetase. This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..
Probab=22.94 E-value=1.1e+02 Score=37.73 Aligned_cols=53 Identities=23% Similarity=0.251 Sum_probs=38.1
Q ss_pred CCcceEEeecCCCCCCCCCCCCCCc-----cccceeeeEE--EecCCC-----cchHHHHHHHHHhcCCC
Q 001485 118 PEPWNVAYVEPSIRPDDSRYGENPN-----RLQRHTQFQV--ILKPDP-----GNSQDLFIRSLSALGID 175 (1070)
Q Consensus 118 ~~~~~~ayv~p~~rp~d~ryg~npn-----rl~~~~q~qv--i~kp~p-----~~~q~lyl~sl~~~gi~ 175 (1070)
.-|-+++|..||.|-. ..|- |+.+++|.=+ +..|.- .++.+++.+.++.|||+
T Consensus 280 ~lP~rl~~~g~~fR~E-----~~g~~~Gl~R~reF~q~~~~~~~~~~~~~~e~~~~i~~~~~~~~~lgl~ 344 (563)
T TIGR00418 280 DLPLRIAELGYSHRYE-----QSGELHGLMRVRGFTQDDAHIFCTEDQIKEEFKNQFRLIQKVYSDFGFS 344 (563)
T ss_pred HCCceeeEeccccCCC-----CCcCCcCcccccceEEeeeEEEcCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3499999999999865 3333 8888888643 445321 23667899999999996
No 89
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed
Probab=22.64 E-value=1.4e+02 Score=35.06 Aligned_cols=76 Identities=24% Similarity=0.326 Sum_probs=51.9
Q ss_pred CceeeeccccccccccCCHHHHhhhcCCCcceEEeecCCCCCCCCCCCCCCccccceeeeEE--EecCCC---cchHHHH
Q 001485 91 GCSVMQCSNTEVGAGTMNPLTFLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRLQRHTQFQV--ILKPDP---GNSQDLF 165 (1070)
Q Consensus 91 gc~~~q~~~~e~gagt~~p~t~~~~l~~~~~~~ayv~p~~rp~d~ryg~npnrl~~~~q~qv--i~kp~p---~~~q~ly 165 (1070)
|-.+.-++|+-+... -++..-...|.+.+|+.+..|.....-| |...++|.-+ |-.+++ ..+..+.
T Consensus 74 g~~l~LRpd~T~~~a-----r~~~~~~~~p~r~~~~g~vfR~e~~~~g----r~ref~Q~g~ei~g~~~~~~d~E~i~~~ 144 (412)
T PRK00037 74 GRSLTLRPEGTAPVV-----RAVIEHKLQPFKLYYIGPMFRYERPQKG----RYRQFHQFGVEVIGSDSPLADAEVIALA 144 (412)
T ss_pred CCEEEecCCCcHHHH-----HHHHhCCCCCeEEEEEcCccccCCCCCC----cccceEEcCeeeeCCCCcchhHHHHHHH
Confidence 666666666433222 1222222389999999999997755433 7788888665 556666 5677899
Q ss_pred HHHHHhcCCC
Q 001485 166 IRSLSALGID 175 (1070)
Q Consensus 166 l~sl~~~gi~ 175 (1070)
.++|+.+|++
T Consensus 145 ~~~l~~lg~~ 154 (412)
T PRK00037 145 ADILKALGLK 154 (412)
T ss_pred HHHHHHcCCC
Confidence 9999999983
No 90
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=22.38 E-value=2.2e+02 Score=35.10 Aligned_cols=29 Identities=24% Similarity=0.579 Sum_probs=19.4
Q ss_pred HHHHHHHHHhCcceeEEECCCCCccccEEEEEc
Q 001485 655 EDLLTVVMKKHQKYFALTDDKGRLLPYFIAVAN 687 (1070)
Q Consensus 655 ~EVLitvMk~HQKYFpv~d~~G~Llp~FI~VsN 687 (1070)
.+++-..++.+.++|||.|.+|+ ++.+-+
T Consensus 267 ~~~~~~m~~~~~~~~PVvd~~g~----lvGiit 295 (546)
T PRK14869 267 EDVKEVMLKSRYRSYPVVDEDGK----VVGVIS 295 (546)
T ss_pred HHHHHHHHhcCCCceEEEcCCCC----EEEEEE
Confidence 34554455566689999998886 455544
No 91
>PRK01310 hypothetical protein; Validated
Probab=21.54 E-value=2.1e+02 Score=28.30 Aligned_cols=62 Identities=18% Similarity=0.262 Sum_probs=39.3
Q ss_pred hhhhhcCCccccccccCCCCcHHHHHHHHH-CCCCccCceEEEeCCeeEEEEEEEecchhHHHHHHHHHHHHH
Q 001485 451 NEFEARGPPVSKAFDQQGNPTKAVEGFCQR-YAVPIDSLVTKAAGKTEYVYARVKETARLALEVLSEDVPSII 522 (1070)
Q Consensus 451 ~~~e~kGP~v~~Afd~~G~pTkAa~GFak~-~Gv~~~~L~~~~~~kgeYv~~~~~~~G~~t~evL~eil~~iI 522 (1070)
....++=||+ +|+..+|+..|+.+ .|+..+++.+..-..+.-=.+... | ..+.|.+.|..++
T Consensus 40 lkv~v~apPv------~GkAN~ali~~LA~~l~v~ks~I~iv~G~tsR~K~v~I~--~--~~~~l~~~l~~~~ 102 (104)
T PRK01310 40 LKVRVRAVPE------GGEANRALIELLAKALGVPKSSVRLLSGATSRLKQLRID--G--DPEDLGEALRALT 102 (104)
T ss_pred EEEEEecCCC------CChHHHHHHHHHHHHhCCChhhEEEEecCCCCceEEEEe--C--CHHHHHHHHHHHh
Confidence 4566778887 89999999988655 599999998876433332222222 3 2344445555443
No 92
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=20.13 E-value=3.6e+02 Score=34.06 Aligned_cols=121 Identities=14% Similarity=0.232 Sum_probs=71.8
Q ss_pred hcCCCcceEEeecCCCCCCCC--CCCCCCccccceeeeE--EEecCCCcc-----hHHHHHHHHHhcCCCCCCC------
Q 001485 115 VLGPEPWNVAYVEPSIRPDDS--RYGENPNRLQRHTQFQ--VILKPDPGN-----SQDLFIRSLSALGIDVTEH------ 179 (1070)
Q Consensus 115 ~l~~~~~~~ayv~p~~rp~d~--ryg~npnrl~~~~q~q--vi~kp~p~~-----~q~lyl~sl~~~gi~~~~h------ 179 (1070)
+...-|-+.+|.-||.|-.=+ +.|- -|+.+|+|.= +++.|++.+ +.++|.+-++.||++..-+
T Consensus 350 sy~~LP~r~~~~g~~fR~E~~~~~~Gl--~R~reF~q~d~~~f~~~~~~~~e~~~~~~~~~~i~~~lgl~~~~~~~~r~~ 427 (639)
T PRK12444 350 SYRELPIRMCEFGQVHRHEFSGALNGL--LRVRTFCQDDAHLFVTPDQIEDEIKSVMAQIDYVYKTFGFEYEVELSTRPE 427 (639)
T ss_pred ChhhCCceeEEeccccCCCCCcCCcCc--ceeeeeEEccEEEECCHHHHHHHHHHHHHHHHHHHHHcCCcEEEEEECCcc
Confidence 333449999999999985442 3332 3777888753 456666543 4578889999999953310
Q ss_pred -----------------------ceeEecCCCCCCccccccccceeeec----------Ceeeee-------eehhhhcC
Q 001485 180 -----------------------DIRFVEDNWESPVLGAWGLGWEIWMD----------GMEITQ-------FTYFQQAG 219 (1070)
Q Consensus 180 -----------------------dirfved~we~p~lga~glgwevw~~----------gmeitq-------ftyfqq~g 219 (1070)
.+.|..|.++. + -||.=||+-++ |.-..+ .||..+-|
T Consensus 428 ~~~G~~e~~~~~~~~l~~~l~~~~~~y~~~~~~g--a-~Y~~~~e~~~~~~~~~~~~~~t~~~d~~~~~~f~l~~~~~~g 504 (639)
T PRK12444 428 DSMGDDELWEQAEASLENVLQSLNYKYRLNEGDG--A-FYGPKIDFHIKDALNRSHQCGTIQLDFQMPEKFDLNYIDEKN 504 (639)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHcCCCceeccCCc--c-cccceEEEEeecCCCChhcccceeeecccccccceEEECCCC
Confidence 01112222211 1 34444555332 332222 35666666
Q ss_pred CcccCcceeeeh-h-hhHHHHHHH
Q 001485 220 SLQLSPVSVEIT-Y-GLERILMLL 241 (1070)
Q Consensus 220 g~~~~~~~~eit-y-gler~~m~~ 241 (1070)
|.. .|+.++-+ | |+|||.+.|
T Consensus 505 ~~~-~P~i~~~~~~g~ieRli~~L 527 (639)
T PRK12444 505 EKR-RPVVIHRAVLGSLDRFLAIL 527 (639)
T ss_pred Ccc-ccEEEEECCCCCHHHHHHHH
Confidence 654 68888877 7 699999888
Done!