Query 001485
Match_columns 1070
No_of_seqs 250 out of 1293
Neff 4.8
Searched_HMMs 29240
Date Tue Mar 26 15:47:18 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001485.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_788-792//hhsearch_pdb/001485hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1j5w_A Glycyl-tRNA synthetase 1.0 1 1 1192.6 20.8 291 69-359 8-298 (298)
2 3rf1_A Glycyl-tRNA synthetase 1.0 1 1 1179.8 17.7 295 60-354 9-309 (311)
3 2ztg_A Alanyl-tRNA synthetase; 1.0 1 1 324.5 9.2 198 54-260 41-282 (739)
4 2zze_A Alanyl-tRNA synthetase; 1.0 1 1 67.4 14.2 259 54-336 38-368 (752)
5 1yfs_A Alanyl-tRNA synthetase; 1.0 1 1 54.3 8.5 178 73-254 2-244 (465)
6 3dsq_A Pyrrolysyl-tRNA synthet 1.0 1 1 44.8 11.4 164 74-252 71-275 (288)
7 1f7u_A Arginyl-tRNA synthetase 1.0 1 1 43.4 6.7 108 955-1062 483-596 (607)
8 2zue_A Arginyl-tRNA synthetase 1.0 1 1 42.7 4.6 106 957-1063 503-619 (629)
9 1iq0_A Arginyl-tRNA synthetase 1.0 1 1 42.4 5.3 104 957-1063 469-582 (592)
10 3dto_A BH2835 protein; all alp 1.0 1 1 41.6 9.8 108 738-851 23-139 (223)
No 1
>1j5w_A Glycyl-tRNA synthetase alpha chain; structural genomics, TM0216, JCSG, PSI, protein structure initiative; 1.95A {Thermotoga maritima} SCOP: d.104.1.1
Probab=1.00 E-value=1 Score=1192.64 Aligned_cols=291 Identities=53% Similarity=0.964 Sum_probs=287.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 67995029999999999983269356612454434456797877531199851288625899999998888976322103
Q 001485 69 QKASVPTFQQAIQRLQEYWASVGCSVMQCSNTEVGAGTMNPLTFLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRLQRHT 148 (1070)
Q Consensus 69 ~~~~~~~~q~~i~~l~~~w~~~gc~~~q~~~~e~gagt~~p~t~~~~l~~~~~~~ayv~p~~rp~d~ryg~npnrl~~~~ 148 (1070)
|.++.|+||++|++||+||+++||+|+||||+|||||||||+||||+||||||++|||||||||+|||||||||||||||
T Consensus 8 ~~~~~~~fQ~iIl~Lq~fWa~~GC~i~QpyD~EvGAGT~~PaTfLRaLGpepw~~AYVqPsRRP~DGRYGeNPNRLq~y~ 87 (298)
T 1j5w_A 8 HHHHHMYLQDVIMKLNDFWASKGCLLEQPYDMEVGAGTFHPATFFGSLRKGPWKVAYVQPSRRPTDGRYGENPNRLQRYF 87 (298)
T ss_dssp -----CCHHHHHHHHHHHHHHTTCEECCCCSSCCSSGGGSHHHHTGGGCSSCEEEEEEEEEECCC-----CCTTCCSEEE
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHE
T ss_conf 00146799999999999998779788767653236466888999875298754145313677998887678933530114
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEECCEEEEEEEHHHHCCCCCCCCCEE
Q ss_conf 46898639995348999998974199998872347247899875465543314652671452220211307855675224
Q 001485 149 QFQVILKPDPGNSQDLFIRSLSALGIDVTEHDIRFVEDNWESPVLGAWGLGWEIWMDGMEITQFTYFQQAGSLQLSPVSV 228 (1070)
Q Consensus 149 q~qvi~kp~p~~~q~lyl~sl~~~gi~~~~~dirfved~we~p~lga~glgwevw~~gmeitqftyfqq~gg~~~~~~~~ 228 (1070)
||||||||||+|+|||||+||++||||+++||||||||||||||||||||||||||||||||||||||||||++|+||++
T Consensus 88 QfQVilKPsP~niQeLYL~SL~alGid~~~HDIRFVEDnWEsPTLGAwGLGWEVWldGMEITQFTYFQQvGGi~c~pv~~ 167 (298)
T 1j5w_A 88 QYQVIIKPSPENSQELYLESLEYLGINLKEHDIRFVEDNWESPTLGAWGVGWEVWLDGMEITQFTYFQQIGGISLKDIPL 167 (298)
T ss_dssp EEEEEEESCCSSHHHHHHHHHHHTTCCTTTSCEEEEEECCEEGGGTEEEEEEEEEETTEEEEEEEEEEEBTTBCCSSCCE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCEEEECCEEEEHHHHHHHCCCCCCCCCCE
T ss_conf 46899779985689999999998489963378136225888876433524501257663302112324117712576312
Q ss_pred EEHHHHHHHHHHHHCCCCEEEEEECCCCCEECCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 20033699999882898300121079984300135310121014455689889999999999999998985998541245
Q 001485 229 EITYGLERILMLLQGVDHFKKIQYADGITYGELFLENEKEMSAYYLEHANVHHLQKQFDFFEEESRSLLASGLAIPAYDQ 308 (1070)
Q Consensus 229 eitygleri~m~~q~~~~~~~~~~~~~~~yg~~~~~~e~e~s~~~~~~~~~~~~~~~f~~~~~e~~~~~~~~l~~pay~~ 308 (1070)
||||||||||||||+|||||||.||+++||||||+|+|+|+|+||||+||+++|+++|+.||+||++|++++|++||||+
T Consensus 168 EITYGLERiamylQ~vd~vydl~w~~~vtYGdvf~q~E~E~S~ynFe~ad~~~L~~~F~~yE~E~~~ll~~~L~lPAYd~ 247 (298)
T 1j5w_A 168 EITYGLERIAMYLQGVDNVYEVQWNENVKYGDVFLENEREFSVFNFEEANVGLLFRHFDEYEKEFYRLVEKNLYLPAYDY 247 (298)
T ss_dssp EEEEEHHHHHHHHHTCSSGGGCEEETTEEHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred EECCCHHHHHHHHHCCCCEECCCCCCCCCEEHHHCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
T ss_conf 30021999999983788012143579986002212008998885252169999999999999999999975999347999
Q ss_pred HHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 874210000111368753556666899999999999999999886329987
Q 001485 309 LLKTSHAFNILDSRGFVGVTERARYFGRMRSLARQCAQLWLKTRKSLGHPL 359 (1070)
Q Consensus 309 ~lk~sh~fn~ldar~~~~~~er~~~~~~~r~l~~~~~~~~~~~~~~~~~~~ 359 (1070)
||||||+|||||||||||||||++||+|||+|||+||+.|+++|+++||||
T Consensus 248 ~LK~SH~FNlLDARgaISvtER~~yI~rvR~la~~~a~~y~~~r~~~g~pl 298 (298)
T 1j5w_A 248 ILKCSHTFNLLDARGAISVSQRQTYVKRIQAMARKAARVFLEVQANENSPA 298 (298)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 999888877676436865899999999999999999999999887538999
No 2
>3rf1_A Glycyl-tRNA synthetase alpha subunit; glycyl-tRNA synthetase subunit alpha, alpha/beta protein, ST genomics; 2.20A {Campylobacter jejuni} PDB: 3rgl_A* 3ufg_A*
Probab=1.00 E-value=1 Score=1179.76 Aligned_cols=295 Identities=49% Similarity=0.912 Sum_probs=284.1
Q ss_pred CCCCCCCCCCC--CCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCCCCC
Q ss_conf 99999973367--9950299999999999832693566124544344567978775311998512886258999999988
Q 001485 60 PSTEPNNERQK--ASVPTFQQAIQRLQEYWASVGCSVMQCSNTEVGAGTMNPLTFLRVLGPEPWNVAYVEPSIRPDDSRY 137 (1070)
Q Consensus 60 ss~~~~~~~~~--~~~~~~q~~i~~l~~~w~~~gc~~~q~~~~e~gagt~~p~t~~~~l~~~~~~~ayv~p~~rp~d~ry 137 (1070)
|-.+..+++-. ..+||||++|++||+||++|||+|+||||+|||||||||+||||+||||||++|||||||||+||||
T Consensus 9 ~~~~~~~~~~~~~~~~~~fQ~iIl~Lq~fWa~qGC~i~QPyD~EvGAGT~hPaTfLRalGpePw~~AYVqPsRRP~DGRY 88 (311)
T 3rf1_A 9 SGVDLGTENLYFQSNAMTFSQMILNLQNYWQEQGCAIMQPYDMPAGAGTFHPATFLRSLGKKPWAAAYVAPSRRPTDGRY 88 (311)
T ss_dssp --------CCCCGGGSCCHHHHHHHHHHHHHTTTCEECCCCSSCCSSGGGSHHHHTTTSSSSCEEEEEEEEEECGGGCCT
T ss_pred CCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCCCCC
T ss_conf 55565654413115767699999999999987798887775433567878889998743987420021056779988876
Q ss_pred CCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEECCEEEEEEEHHHH
Q ss_conf 88976322103468986399953489999989741999988723472478998754655433146526714522202113
Q 001485 138 GENPNRLQRHTQFQVILKPDPGNSQDLFIRSLSALGIDVTEHDIRFVEDNWESPVLGAWGLGWEIWMDGMEITQFTYFQQ 217 (1070)
Q Consensus 138 g~npnrl~~~~q~qvi~kp~p~~~q~lyl~sl~~~gi~~~~~dirfved~we~p~lga~glgwevw~~gmeitqftyfqq 217 (1070)
|||||||||||||||||||||+|+|||||+||++||||+++|||||||||||||||||||||||||||||||||||||||
T Consensus 89 GeNPNRLq~yyQfQVilKPsP~niQeLYL~SL~alGId~~~HDIRFVEDnWEsPTLGAWGLGWEVWldGMEVTQFTYFQQ 168 (311)
T 3rf1_A 89 GENPNRLGAYYQFQVLIKPSPDNIQELYLKSLENLGFDLKSHDIRFVEDNWESPSLGAWGLGWEVWLDGMEVTQFTYFQQ 168 (311)
T ss_dssp TCCSSCCSEEEEEEEEEESCCTTHHHHHHHHHHHTTCCGGGSCEEEEECCEEETTTTEEEEEEEEEETTEEEEEEEEEEE
T ss_pred CCCCHHHHHHEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEECCEEEEEEEEEEE
T ss_conf 78930431024458997689701899999999995899510371573148889854203145289886746764450211
Q ss_pred CCCCCCCCCEEEEHHHHHHHHHHHHCCCCEEEEEECC----CCCEECCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 0785567522420033699999882898300121079----984300135310121014455689889999999999999
Q 001485 218 AGSLQLSPVSVEITYGLERILMLLQGVDHFKKIQYAD----GITYGELFLENEKEMSAYYLEHANVHHLQKQFDFFEEES 293 (1070)
Q Consensus 218 ~gg~~~~~~~~eitygleri~m~~q~~~~~~~~~~~~----~~~yg~~~~~~e~e~s~~~~~~~~~~~~~~~f~~~~~e~ 293 (1070)
|||++|+||++||||||||||||||+|||||||.||+ ++||||||+|+|+|+|+||||+||+++|+++|++||+||
T Consensus 169 vGGi~c~pv~~EITYGLERlamylQ~vd~vyDl~w~~~~~~~vtYGdvf~q~E~E~S~ynFe~ad~~~L~~~F~~~E~Ea 248 (311)
T 3rf1_A 169 VGGIAVDLVSAEITYGLERIAMYLQNVDNVYDIVWSEFNGEKIKYADVHKQSEYEFSKYNFEVSDVKILNEQFENSYKEC 248 (311)
T ss_dssp ETTEECSSCCEEEEEEHHHHHHHHTTCSSGGGSEEEEETTEEEEHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred ECCCCCCCCCEEEEHHHHHHHHHHHCCCEEEECCCCCCCCCCCCHHHHHCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHH
T ss_conf 17712566532320109999999957880241323578889866635303018887662764379999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9989859985412458742100001113687535566668999999999999999998863
Q 001485 294 RSLLASGLAIPAYDQLLKTSHAFNILDSRGFVGVTERARYFGRMRSLARQCAQLWLKTRKS 354 (1070)
Q Consensus 294 ~~~~~~~l~~pay~~~lk~sh~fn~ldar~~~~~~er~~~~~~~r~l~~~~~~~~~~~~~~ 354 (1070)
++|++++|++||||+||||||+|||||||||||||||++||+|||+|||+||+.|++++.+
T Consensus 249 ~~ll~~~L~lPAYd~vLK~SH~FNlLDARgaISvtER~~yI~RvR~La~~~A~~y~~~~~~ 309 (311)
T 3rf1_A 249 KNILEQGLALPAYDYCMLAAHTFNLLDARGAISVAQRQDYMLKIRELSKNCAEIYKKNLNE 309 (311)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9999759985629999988766655654246538999999999999999999999998503
No 3
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus}
Probab=1.00 E-value=1 Score=324.46 Aligned_cols=198 Identities=17% Similarity=0.318 Sum_probs=178.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCC-----------CCCCCCCCHHHHHHHCCCCCCE
Q ss_conf 66679999999973367995029999999999983269356612454-----------4344567978775311998512
Q 001485 54 SAIQEPPSTEPNNERQKASVPTFQQAIQRLQEYWASVGCSVMQCSNT-----------EVGAGTMNPLTFLRVLGPEPWN 122 (1070)
Q Consensus 54 ~~~~~~ss~~~~~~~~~~~~~~~q~~i~~l~~~w~~~gc~~~q~~~~-----------e~gagt~~p~t~~~~l~~~~~~ 122 (1070)
++.|-..|+--.+. ....+|++|+|+.++.+||.++||.+++||++ ..|+++|+|.++++..+|.+|+
T Consensus 41 gd~~c~~y~fi~~~-~~~~~~~~~eir~~f~~ff~~~gh~~~~s~~lvp~~dptllft~agm~~fkp~~~~g~~~p~~~~ 119 (739)
T 2ztg_A 41 GDPPCESYSFIGNP-VFKKPFELDEMREYYLNFFERRGHGRIERYPVVARWRTDIYLTIASIADFQPFVTSGVAPPPANP 119 (739)
T ss_dssp CSSSSCCCCCTTSC-SSSSCCCHHHHHHHHHHHHHTTTCEECCCCCSBCTTCSSBSBCCSGGGGGTTTTTTSSSCCSSSS
T ss_pred CCCCCCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCEEEECCHHHCCHHHHCCCCCCCCCC
T ss_conf 99999874515788-76778899999999999998788989588672778999722432372227076708977999988
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCEEEEEEEECC-C---CCC-------HHHHHHHHHHHCCCCCCCCCEEEECCC-CCC
Q ss_conf 8862589999999888897632210346898639-9---953-------489999989741999988723472478-998
Q 001485 123 VAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKP-D---PGN-------SQDLFIRSLSALGIDVTEHDIRFVEDN-WES 190 (1070)
Q Consensus 123 ~ayv~p~~rp~d~ryg~npnrl~~~~q~qvi~kp-~---p~~-------~q~lyl~sl~~~gi~~~~~dirfved~-we~ 190 (1070)
++++|||+|+.| +||++|.++||||+++|++ | |+| .++++.++|+.+|||+. +|+| +|| ||+
T Consensus 120 ~~~~Q~ciR~~D---~envg~t~rH~tfFeMlgn~sFg~~~~~dYfK~eai~~~~e~l~~~g~~~~--~i~~-~dnfW~~ 193 (739)
T 2ztg_A 120 LTISQPCIRLDD---LDSVGRTGRHLTLFEMMAHHAFNYPGKEIYWKNETVAYCTELLNELGVKKE--DIVY-KEEPWAG 193 (739)
T ss_dssp EEEEEEEECGGG---GGGTTTSSSCCSEEEEEEEEEEEBTTBCSCCHHHHHHHHHHHHHHHTCCGG--GCEE-EEEEEEE
T ss_pred CCCCCCCCCCCC---CCCCCCCCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHH--HEEE-CCCCCCC
T ss_conf 645534653764---456887776313441147441689864442199999999999988198999--9406-4672557
Q ss_pred CCCCCCCCCCEEEECCEEEEEEEHHH----HCCCC--------CCCCCEEEEHHHHHHHHHHHHCCCCEEEEEECC----
Q ss_conf 75465543314652671452220211----30785--------567522420033699999882898300121079----
Q 001485 191 PVLGAWGLGWEIWMDGMEITQFTYFQ----QAGSL--------QLSPVSVEITYGLERILMLLQGVDHFKKIQYAD---- 254 (1070)
Q Consensus 191 p~lga~glgwevw~~gmeitqftyfq----q~gg~--------~~~~~~~eitygleri~m~~q~~~~~~~~~~~~---- 254 (1070)
+ |+||.+||||+|||||+|++|+| +.|++ +|...+++.+||||||+|++|||+|+||+.|.+
T Consensus 194 g--Gp~Gpc~Ei~~dg~EiwnlVfmq~~r~~~g~~~~~~~~y~~l~~~~iDtG~GlER~~~~lqg~~s~yd~~f~pii~~ 271 (739)
T 2ztg_A 194 G--GNAGPCLEAIVGGLEVATLVFMNLEEHPEGDIEIKGARYRKMDNYIVDTGYGLERFVWASKGTPTVYDAIFPEVVDT 271 (739)
T ss_dssp T--TEEEEEEEEEETTEEEEEEEEEEEEECTTCCEEETTEEEEEEEEEEEEEEEEHHHHHHHHHCCSSHHHHHCHHHHHH
T ss_pred C--CCCCCEEEEEECCEEEEEEEEEEEEECCCCCEEECCCCCCCCCCCEEECCCCHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 8--78787069998979864235677640589862216766668999857448499999999849993688659999999
Q ss_pred -----CCCEEC
Q ss_conf -----984300
Q 001485 255 -----GITYGE 260 (1070)
Q Consensus 255 -----~~~yg~ 260 (1070)
|+.||.
T Consensus 272 ~~~~~g~~y~~ 282 (739)
T 2ztg_A 272 IIDNSNVSFNR 282 (739)
T ss_dssp HHHTSCCSSCT
T ss_pred HHHHHCCCCCC
T ss_conf 99985998665
No 4
>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A*
Probab=1.00 E-value=1 Score=67.39 Aligned_cols=259 Identities=19% Similarity=0.234 Sum_probs=157.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC---CEEEECCCCCC---------CCC--CCCHHHHHHHCCCC
Q ss_conf 66679999999973367995029999999999983269---35661245443---------445--67978775311998
Q 001485 54 SAIQEPPSTEPNNERQKASVPTFQQAIQRLQEYWASVG---CSVMQCSNTEV---------GAG--TMNPLTFLRVLGPE 119 (1070)
Q Consensus 54 ~~~~~~ss~~~~~~~~~~~~~~~q~~i~~l~~~w~~~g---c~~~q~~~~e~---------gag--t~~p~t~~~~l~~~ 119 (1070)
++.|-..|+=-.+.+ ....|+..+|-.+.-+|+.++| +.++.++.+=- .|| .|-|.-.+..--|.
T Consensus 38 gd~~c~~y~fi~~~~-~~~~~~~~eiR~~fl~fF~~kg~~~H~~v~s~~lvp~~dptllftnAGm~~fk~~f~~G~~~pp 116 (752)
T 2zze_A 38 GDPPCDEYQFIGKPG-IPRXYTLDEMREXFLRFFEXHEIYPHGRVXRYPVLPRWRDDVLLVGASIMDFQPWVISGEADPP 116 (752)
T ss_dssp SSTTTSCCCCTTSCS-SSSCCCHHHHHHHHHHHHHTCSSSCCEECCCCCSSCTTCSSCSSCCSGGGGGTTHHHHTSSCCS
T ss_pred CCCCCCCCCCCCCCC-CCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCEEEEECCHHHHHHHHCCCCCCCC
T ss_conf 999987756058886-3466899999999999973168876037843576568999802430453440376608876899
Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCC-CCEEEEEEEECCCCC-----C-----HHHHHHHHH-HHCCCCCCCCCEEEECCC
Q ss_conf 5128862589999999888897632-210346898639995-----3-----489999989-741999988723472478
Q 001485 120 PWNVAYVEPSIRPDDSRYGENPNRL-QRHTQFQVILKPDPG-----N-----SQDLFIRSL-SALGIDVTEHDIRFVEDN 187 (1070)
Q Consensus 120 ~~~~ayv~p~~rp~d~ryg~npnrl-~~~~q~qvi~kp~p~-----~-----~q~lyl~sl-~~~gi~~~~~dirfved~ 187 (1070)
.-+++-.|+|.|-.| -||--+- .||+=|+.+=.=|-+ + ..+.--+=| +.+||++. .|-+ +||
T Consensus 117 ~~r~~~~QkCiR~~D---lenVG~t~rHhTfFEMlGnfSFg~~~~~dYfK~eaI~~awe~lT~~~gl~~~--ri~~-~dN 190 (752)
T 2zze_A 117 ANPLVISQPSIRFTD---IDNVGITGRHFTIFEMMAHHAFNYPGXPIYWMDETVELAFEFFTKELXMXPE--DITF-KEN 190 (752)
T ss_dssp SSSEEEEEEEECCTT---GGGTTTSSSCCSEEEEEEEEEEECTTCCCCCHHHHHHHHHHHHHHTSCCCGG--GEEE-EEC
T ss_pred CCCCCCCCCCEECCC---HHHCCCCCCCHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHCCHH--HEEE-CCC
T ss_conf 987045545412476---7544888862467885754230797167778888999999997436414631--2323-257
Q ss_pred CCCCCCCCCCCCCEEEECCEEEEEEEHHHH---------------CCC--CCCCCCEEEEHHHHHHHHHHHHCCCCEEEE
Q ss_conf 998754655433146526714522202113---------------078--556752242003369999988289830012
Q 001485 188 WESPVLGAWGLGWEIWMDGMEITQFTYFQQ---------------AGS--LQLSPVSVEITYGLERILMLLQGVDHFKKI 250 (1070)
Q Consensus 188 we~p~lga~glgwevw~~gmeitqftyfqq---------------~gg--~~~~~~~~eitygleri~m~~q~~~~~~~~ 250 (1070)
|=+-- |--|=--|+..||+||--.-++|. -+| .+|.-..+.--||||||++.+||+.+.||.
T Consensus 191 fW~~G-GpcGPcsEI~~dglEiwNlVFmq~~~~~~~~~~~~~~~~~~g~~~~Lp~~~IDTGmGlERl~~vlQg~~snydt 269 (752)
T 2zze_A 191 PWAGG-GNAGPAFEVLYRGLEVATLVFMQYXXAPENAPQDQVVVIXGEKYIPMETXVVDTGYGLERLVWMSQGTPTAYDA 269 (752)
T ss_dssp CEEET-TEEECEEEEEETTEEEEEEEEEEEEECCTTCCSCCEEETTTEEEEEEEEEEEEEEEEHHHHHHHHHCCSSHHHH
T ss_pred CCCCC-CCCCCCEEEEECCEEEEEEEEEEECCCCCCCCCCCHHCCCCCEEEECCCCCCCCCCCHHHHHHHHCCCCCHHHH
T ss_conf 33479-89888546877877513000012114544432310111369825357754304663799999998189965998
Q ss_pred EECC---------CCCEECC--CCCCHHHHHCC----CCCC-CCHHHHHHHHHHH----H---------HHHHHHHHCCC
Q ss_conf 1079---------9843001--35310121014----4556-8988999999999----9---------99999898599
Q 001485 251 QYAD---------GITYGEL--FLENEKEMSAY----YLEH-ANVHHLQKQFDFF----E---------EESRSLLASGL 301 (1070)
Q Consensus 251 ~~~~---------~~~yg~~--~~~~e~e~s~~----~~~~-~~~~~~~~~f~~~----~---------~e~~~~~~~~l 301 (1070)
.+.+ |+.|++- .. +.+.| +.+. .+++++++....- . ..+.|.+.
T Consensus 270 ~f~pii~~~~~~~g~~y~~~~~~~----~~a~~~g~~~~~~~~~~~~~~~~va~~~~~~~~~~~~~~~~~~~~rvIa--- 342 (752)
T 2zze_A 270 VLGYVVEPLXXMAGIEKIDEKILM----ENSRLAGMFDIEDLGDLRYLREQVAKRVGITVEELEKAIRPYELIYAIA--- 342 (752)
T ss_dssp HSHHHHHHHHHHHTCCCCCHHHHH----HHHHHHHTCCSSSSSCHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHCCCCCCCHHHHH----HHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCEEEEEH---
T ss_conf 899999999976088755202332----2100035678432004899999887751777788765305531278862---
Q ss_pred CCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 85412458742100001113687535566668999
Q 001485 302 AIPAYDQLLKTSHAFNILDSRGFVGVTERARYFGR 336 (1070)
Q Consensus 302 ~~pay~~~lk~sh~fn~ldar~~~~~~er~~~~~~ 336 (1070)
|++=-+ +| +=|-|++--+|-.+|+.|
T Consensus 343 -----DH~R~~--~f--~i~DGv~PsN~GrGYvlR 368 (752)
T 2zze_A 343 -----DHTKAL--TF--MLADGVVPSNVXAGYLAR 368 (752)
T ss_dssp -----HHHHHH--HH--HHHTTCCCSSSHHHHHHH
T ss_pred -----HHHHHH--HH--HCCCCCCCCCCCHHHHHH
T ss_conf -----245534--63--102677767522158999
No 5
>1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A 1ygb_A 3htz_A
Probab=1.00 E-value=1 Score=54.31 Aligned_cols=178 Identities=21% Similarity=0.295 Sum_probs=115.2
Q ss_pred CCHHHHHHHHHHHHHHHCCCEEEECCCCCC---------CCC--CCCHHHHHHHCCCCCCEEEEECCCCCC--C--CCCC
Q ss_conf 502999999999998326935661245443---------445--679787753119985128862589999--9--9988
Q 001485 73 VPTFQQAIQRLQEYWASVGCSVMQCSNTEV---------GAG--TMNPLTFLRVLGPEPWNVAYVEPSIRP--D--DSRY 137 (1070)
Q Consensus 73 ~~~~q~~i~~l~~~w~~~gc~~~q~~~~e~---------gag--t~~p~t~~~~l~~~~~~~ayv~p~~rp--~--d~ry 137 (1070)
.|+-.+|-.+.-+|+.++|+.++.++.+=- .|| .|-|. |+..--|..-+++-.|+|.|- . |
T Consensus 2 ~~~~~eiR~~Fl~FF~~kgH~~vpSsslvp~~DptLLftnAGM~~FKp~-flG~~~p~~~r~t~sQkCiRag~~hND--- 77 (465)
T 1yfs_A 2 SLSAHEIRELFLSFFEKKGHTRVKSAPLVPENDPTLLFVNAGMVPFKNV-FLGLEKRPYKRATSCQKCLRVSGKHND--- 77 (465)
T ss_dssp CCCHHHHHHHHHHHHHTTTCEECCCCCSSCTTCTTCSSCCSTTSTTHHH-HHTSSCCSCSEEEEEEEEECEETTEEC---
T ss_pred CCCHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCEECCCHHHHHHH-HCCCCCCCCCCEECCCCCCCCCCCCCC---
T ss_conf 9989999999999998688989167773669999820221344551577-649888999860013401206888661---
Q ss_pred CCCCCC-CCCEEEEEEEECCCCCC-----HHHHHHHHH-HHCCCCC-------------------------CCCCEEEE-
Q ss_conf 889763-22103468986399953-----489999989-7419999-------------------------88723472-
Q 001485 138 GENPNR-LQRHTQFQVILKPDPGN-----SQDLFIRSL-SALGIDV-------------------------TEHDIRFV- 184 (1070)
Q Consensus 138 g~npnr-l~~~~q~qvi~kp~p~~-----~q~lyl~sl-~~~gi~~-------------------------~~~dirfv- 184 (1070)
-||--+ -.||+=|+.+=.=|-++ ..+.--+=| +.+||++ .+|=+|+-
T Consensus 78 lenVG~t~rHhTfFEMLGNfSFGDYFK~eAI~~AwE~LT~~lgl~~~rL~vTv~~~D~Ea~~iW~~~~G~p~~rI~~~g~ 157 (465)
T 1yfs_A 78 LEQVGYTSRHHTFFEMLGNFSFGDYFKKEAIEYAWEFVTEVLKLPKEKLYVSVYKDDEEAYRIWNEHIGIPSERIWRLGE 157 (465)
T ss_dssp GGGBTTBSSCCSEEEEEEEEESSSCCHHHHHHHHHHHHHHTSCCCGGGEEEEEETTCHHHHHHHHTTTCCCGGGEEEECH
T ss_pred HHHCCCCCCCCCHHEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHEEEEEECCCHHHHHHHHHHCCCCHHHEEECCC
T ss_conf 76538888752130043442135663999999999999865199778948988279789999999730998999566787
Q ss_pred CCC-CCCCCCCCCCCCCEEEEC-C---------EEEEEEEHH--HHC-CC--CCCCCCEEEEHHHHHHHHHHHHCCCCEE
Q ss_conf 478-998754655433146526-7---------145222021--130-78--5567522420033699999882898300
Q 001485 185 EDN-WESPVLGAWGLGWEIWMD-G---------MEITQFTYF--QQA-GS--LQLSPVSVEITYGLERILMLLQGVDHFK 248 (1070)
Q Consensus 185 ed~-we~p~lga~glgwevw~~-g---------meitqftyf--qq~-gg--~~~~~~~~eitygleri~m~~q~~~~~~ 248 (1070)
+|| |+.-.-|--|=-=|+..| | +||--.-+. .+- +| .+|.-..+.--+|||||++.+|||.+.|
T Consensus 158 ~dNFW~mG~tGPCGPCsEI~yD~g~~~~~~~r~lEIWNlVFmQy~r~~~g~l~pLp~k~IDTGmGLERla~vlQg~~snY 237 (465)
T 1yfs_A 158 EDNFWQMGDVGPCGPSSEIYVDRGEEYEGDERYLEIWNLVFMQYNRDENGVLTPLPHPNIDTGMGLERIASVLQGKNSNF 237 (465)
T ss_dssp HHHEEESSSSEEEEEEEEEEEECCTTSCHHHHEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEHHHHHHHHTTCSSGG
T ss_pred CCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCCCEECCCCHHHHHHHHCCCCCCC
T ss_conf 67766478984887875788715788788877787631133677845898633289970415867999999981998632
Q ss_pred EE-EECC
Q ss_conf 12-1079
Q 001485 249 KI-QYAD 254 (1070)
Q Consensus 249 ~~-~~~~ 254 (1070)
|. .+.+
T Consensus 238 dtDlf~p 244 (465)
T 1yfs_A 238 EIDIIFP 244 (465)
T ss_dssp GSTTTHH
T ss_pred HHHHHHH
T ss_conf 0563899
No 6
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A
Probab=1.00 E-value=1 Score=44.76 Aligned_cols=164 Identities=18% Similarity=0.233 Sum_probs=103.7
Q ss_pred CHHHHHHHHHHHHHHHCCCEEEECCCCCC-------CCC-------CCC-------------HHHH--HHHC---CCCCC
Q ss_conf 02999999999998326935661245443-------445-------679-------------7877--5311---99851
Q 001485 74 PTFQQAIQRLQEYWASVGCSVMQCSNTEV-------GAG-------TMN-------------PLTF--LRVL---GPEPW 121 (1070)
Q Consensus 74 ~~~q~~i~~l~~~w~~~gc~~~q~~~~e~-------gag-------t~~-------------p~t~--~~~l---~~~~~ 121 (1070)
.-.|.++..+.+.-...|+..+..+..+- |-. .++ |... ++.. ...|.
T Consensus 71 h~~~~l~~~ir~~~~~~Gf~EV~tP~Le~~~l~~~~g~~~~~~m~~~~npl~e~~~LRp~l~p~l~~~~r~~~~~~~~Pl 150 (288)
T 3dsq_A 71 PALLELEEKLAKALHQQGFVQVVTPTIITKSALAKMTIGEDHPLFSQVFWLDGKKCLRPMLAPNLYTLWRELERLWDKPI 150 (288)
T ss_dssp CHHHHHHHHHHHHHHTTTCEECCCCSEEEHHHHHTTSSCC--CCTTTSCEEETTEEECSCSHHHHHHHHHHHTTTSCSCE
T ss_pred CHHHHHHHHHHHHHHHCCCEEEECCEEECHHHHHHCCCCCCCCCEEEECCCCCCHHHHHCCHHHHHHHHHHHHHCCCCCE
T ss_conf 89999999999999987999999986515899855489742461775324452022043382999999999985789898
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEE--CCCCCCHHH---HHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCC
Q ss_conf 288625899999998888976322103468986--399953489---999989741999988723472478998754655
Q 001485 122 NVAYVEPSIRPDDSRYGENPNRLQRHTQFQVIL--KPDPGNSQD---LFIRSLSALGIDVTEHDIRFVEDNWESPVLGAW 196 (1070)
Q Consensus 122 ~~ayv~p~~rp~d~ryg~npnrl~~~~q~qvi~--kp~p~~~q~---lyl~sl~~~gi~~~~~dirfved~we~p~lga~ 196 (1070)
++.++.+|.|+..+-. .|+...+|.-+.+ +|++.+..+ ++-.-++.+|++ +.+|++...|-+
T Consensus 151 rlfeiG~vFR~E~~~~----~r~~EF~qle~~i~g~~~~~~f~elkg~le~ll~~LGl~----~~~~~~~s~e~~----- 217 (288)
T 3dsq_A 151 RIFEIGTCYRKESQGA----QHLNEFTMLNLTELGTPLEERHQRLEDMARWVLEAAGIR----EFELVTESSVVY----- 217 (288)
T ss_dssp EEEEEEEEECSCCSSS----CCCSEEEEEEEEEETCCGGGHHHHHHHHHHHHHHHHTCC----CCEEEECCCCSS-----
T ss_pred EEEEEEEEEECCCCCC----CCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCC----CCEEECCCCCEE-----
T ss_conf 9999840894688888----767627999999986886146999999999999983999----727865775437-----
Q ss_pred CCCCEEEECCEEEEEEEHHHHC----CCCCCCCCEEEEHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 4331465267145222021130----7855675224200336999998828983001210
Q 001485 197 GLGWEIWMDGMEITQFTYFQQA----GSLQLSPVSVEITYGLERILMLLQGVDHFKKIQY 252 (1070)
Q Consensus 197 glgwevw~~gmeitqftyfqq~----gg~~~~~~~~eitygleri~m~~q~~~~~~~~~~ 252 (1070)
|-+..++++|.||.-+-.-.++ .|++. |+.+ .--|+|||+|.+.|++++-++.=
T Consensus 218 ~~~~~l~~~~~eig~~Gv~p~vl~~~~gi~~-~~~g-fglglerl~m~~~g~~~iR~~~~ 275 (288)
T 3dsq_A 218 GDTVDVMKGDLELASGAMGPHFLDEKWEIFD-PWVG-LGFGLERLLMIREGTQHVQSMAR 275 (288)
T ss_dssp CCCEEEEETTEEEEEEEEESCTTTTTTTCCS-CEEE-EEEEHHHHHHHHHTCSCGGGGSS
T ss_pred EEEEEEEECCEEEEEEEECHHHHHHHCCCCC-CEEE-EEECHHHHHHHHCCCCHHHCCCC
T ss_conf 9987997599899999951799888409998-8599-99879999999749933204778
No 7
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=1.00 E-value=1 Score=43.40 Aligned_cols=108 Identities=15% Similarity=0.166 Sum_probs=76.2
Q ss_pred CCCHHHHHHHHHHHHHHCCCC-CCCCC--CCCCCCCCCCHHHHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHCHHHH
Q ss_conf 999368999974442200388-87876--688901289899999999999986111888---786899999962112898
Q 001485 955 GQLFPKVVEAYSRPTRIVRGK-DVDTA--LEVDETAFETIEEKALWTVYLSAKNKIHPG---INVDDFIEISSELVQPLE 1028 (1070)
Q Consensus 955 ~~~f~~l~~a~KRv~NIl~k~-~~~~~--~~vd~~ll~~~~Ek~L~~~~~~~~~~~~~~---~~~~~~~~~l~~L~~~Id 1028 (1070)
.+...-+.-++.|+..|++|. +.... ...+..++.+++|..|...+......+..+ ..-......+.+|....+
T Consensus 483 g~t~pylqYa~aRi~SIlrka~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~fp~vv~~a~~~~~P~~l~~Yl~~La~~fn 562 (607)
T 1f7u_A 483 GDTGPYLQYAHSRLRSVERNASGITQEKWINADFSLLKEPAAKLLIRLLGQYPDVLRNAIKTHEPTTVVTYLFKLTHQVS 562 (607)
T ss_dssp SSSHHHHHHHHHHHHHHHHHTTTSCHHHHTTSCGGGCCSHHHHHHHHHHTTHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf 66468899999999999987358982002434332118989999999999989999999983599999999999999999
Q ss_pred HHHCCCEECCCCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 3100042037957899999999999997421203
Q 001485 1029 DFFNHVFVMVEEERIRKNRLALLKKIADLPKGIV 1062 (1070)
Q Consensus 1029 ~FFD~VmVm~eD~~IR~NRLaLL~~i~~lf~~ia 1062 (1070)
.|.++.-|..+|++++..||+|...++.....-.
T Consensus 563 ~fY~~~~Vl~~~~~~~~aRL~L~~a~~~vL~~gL 596 (607)
T 1f7u_A 563 SCYDVLWVAGQTEELATARLALYGAARQVLYNGM 596 (607)
T ss_dssp HHHHHCCSTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9997188889987899999999999999999999
No 8
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=1.00 E-value=1 Score=42.68 Aligned_cols=106 Identities=18% Similarity=0.188 Sum_probs=72.0
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCC--------CCCCCCCCCCCHHHHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHCH
Q ss_conf 93689999744422003888787--------668890128989999999999998611188---8786899999962112
Q 001485 957 LFPKVVEAYSRPTRIVRGKDVDT--------ALEVDETAFETIEEKALWTVYLSAKNKIHP---GINVDDFIEISSELVQ 1025 (1070)
Q Consensus 957 ~f~~l~~a~KRv~NIl~k~~~~~--------~~~vd~~ll~~~~Ek~L~~~~~~~~~~~~~---~~~~~~~~~~l~~L~~ 1025 (1070)
...-+.-++.|+..|++|..... ....+. .+.++.|..|...+......+.. ...-......+.+|..
T Consensus 503 t~~ylqYa~aRi~Silrka~~~~~~~~~~~~~~~~~~-~l~~~~e~~L~~~l~~fp~~v~~a~~~~~p~~l~~yl~~La~ 581 (629)
T 2zue_A 503 SAPYIQYAHARCSSILRKAEEEGIKVDPETLFKNADF-TKLSERERELVIMLSKFPRIVEQAGKDVKPHLIAWFANELAS 581 (629)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHCCC-SSCCHHHHHHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 4388999999999999862221666322235554565-679988999999999999999999980799999999999999
Q ss_pred HHHHHHCCCEECCCCHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 89831000420379578999999999999974212035
Q 001485 1026 PLEDFFNHVFVMVEEERIRKNRLALLKKIADLPKGIVD 1063 (1070)
Q Consensus 1026 ~Id~FFD~VmVm~eD~~IR~NRLaLL~~i~~lf~~iaD 1063 (1070)
..+.|+++.-|..+|++++..||+|...++.....-.+
T Consensus 582 ~fn~fy~~~~vl~~~~~~~~~RL~L~~a~~~vL~~gL~ 619 (629)
T 2zue_A 582 LFNKFYMDHPVLKAEEGVREARLLLVMAVEQVLKNALY 619 (629)
T ss_dssp HHHHHHHHCCSTTSCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999986606478857799999999999999999999
No 9
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=1.00 E-value=1 Score=42.40 Aligned_cols=104 Identities=20% Similarity=0.154 Sum_probs=73.1
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHCHHHHHHHCC
Q ss_conf 936899997444220038887876688901289899999999999986111888---78689999996211289831000
Q 001485 957 LFPKVVEAYSRPTRIVRGKDVDTALEVDETAFETIEEKALWTVYLSAKNKIHPG---INVDDFIEISSELVQPLEDFFNH 1033 (1070)
Q Consensus 957 ~f~~l~~a~KRv~NIl~k~~~~~~~~vd~~ll~~~~Ek~L~~~~~~~~~~~~~~---~~~~~~~~~l~~L~~~Id~FFD~ 1033 (1070)
...-+.-++.|+..|++|..... .. +. .+.++.|..|...+......+..+ .+-......+.+|....|.|+++
T Consensus 469 ~~~ylqya~aR~~sil~k~~~~~-~~-~~-~l~~~~e~~L~~~l~~~~~~v~~a~~~~~p~~~~~yl~~La~~fn~fy~~ 545 (592)
T 1iq0_A 469 TGPYVQYAHARAHSILRKAGEWG-AP-DL-SQATPYERALALDLLDFEEAVLEAAEERTPHVLAQYLLDLAASWNAYYNA 545 (592)
T ss_dssp SHHHHHHHHHHHHHHHHHHCCCC-CC-CG-GGCCHHHHHHHHHHTTHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHHCCCC-CC-CC-CCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 63989899999999998624367-87-66-77998999999999999999999998279999999999999999999995
Q ss_pred C-------EECCCCHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 4-------20379578999999999999974212035
Q 001485 1034 V-------FVMVEEERIRKNRLALLKKIADLPKGIVD 1063 (1070)
Q Consensus 1034 V-------mVm~eD~~IR~NRLaLL~~i~~lf~~iaD 1063 (1070)
. -|..+|+++++.||+|+..+........+
T Consensus 546 ~~~~~~~~~vl~~~~~~~~~RL~L~~a~~~vl~~~l~ 582 (592)
T 1iq0_A 546 RENGQPATPVLTAPEGLRELRLSLVQSLQRTLATGLD 582 (592)
T ss_dssp EETTEESSCSTTSCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 3554567813478878899999999999999999998
No 10
>3dto_A BH2835 protein; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Bacillus halodurans} SCOP: a.211.1.1
Probab=1.00 E-value=1 Score=41.56 Aligned_cols=108 Identities=21% Similarity=0.194 Sum_probs=78.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHCCCCH----HHHHHH
Q ss_conf 7987999999999999999880999357999999999640100102220191466779899998479999----999999
Q 001485 738 LGTMLDKTMRVQNMVRKLSLDLGINEDMLQIVQEAASLAMSDLATSVVMEFTSLAGVMACHYALRDGYSQ----QIAEAL 813 (1070)
Q Consensus 738 LGSl~DK~~Ri~~La~~La~~l~~~~~~~~~~~RAA~L~KaDL~T~MV~EFPELQGiMG~~YA~~~GE~~----~VA~AI 813 (1070)
-|--++.+.|+..++..|+...+.+. ..+.-||.|- |+...-...=++....|++......|.++ .|+.+|
T Consensus 23 ~~H~~~H~~rV~~~a~~ia~~~~~d~---~~l~~AalLH--Dig~~k~~~~~~~ga~~a~~~L~~~g~~~~~i~~V~~~I 97 (223)
T 3dto_A 23 SGHDWYHIRRVTLMAKAIGEQEKVDV---FVVQIAALFH--DLIDDKLVDDPETAKQQLIDWMEAAGVPSQKIDHTMDII 97 (223)
T ss_dssp ---CHHHHHHHHHHHHHHHHHTTCCH---HHHHHHHHHH--STTC-------CHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCH---HHHHHHHHHH--HCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 87709999999999999998759999---9999999986--224413588799999999999988599989999999999
Q ss_pred HHHCCCCCCCCCCCCCCHHHHHHHHHHHHH-----HHHHHHCC
Q ss_conf 862077999999998512569887656888-----99765149
Q 001485 814 LEINLPRFSGDVLPKTDVGTVLAVADRLDT-----LVGLFAAG 851 (1070)
Q Consensus 814 ~EhYlPr~agD~LP~t~~G~iLsIADKlDt-----LvG~F~iG 851 (1070)
..|-.+..-++ -|.|+.+.+|.-|||||. |.-||..|
T Consensus 98 ~~Hs~~~~~~~-~p~tlEa~IV~dADrLDalGaiGiaR~f~~~ 139 (223)
T 3dto_A 98 NTISFKGGHGQ-SLATREAMVVQDADRLDALGAIGIARTFAYS 139 (223)
T ss_dssp HCC-----------CCHHHHHHHHHHHGGGSSHHHHHHHHHHH
T ss_pred HHCCCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 97397668799-9998799999739999987743999999999
Done!