Your job contains 1 sequence.
>001486
MEVQISNLESLSAEPNSPVGFGKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGL
VYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMST
FEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLH
HYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDL
VRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAE
KQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVI
HLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEAL
ETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLLLEELIKFTMV
HGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQH
IKLFPHTVRTAYECPGRETKSLRAFIRGKRESNVASLPQPFESEHLMPSASQDKKFSPPE
KSDSESGDDATSLPSNQKSPLPENHDIRSDGAEVDILLSGEADSSSQDRMQQVPPEAAEQ
HSQDACDPEVLSLDLAHQVTNENETVQASEAFSEEDDVQREYEHESKKDLKPLSLEGLSL
DPGGNDSPGSLCATSHECEAPQKTNFSHESMLKSEAPRETSLSDGSVLGASQNNNGSHFA
PSSMGTQASSSAPIQTRTVSPSSSASHQNFIPEAHSHPQTPANSGRNWHEQQNPDRVHRD
LRFGYRGHSHKRQHQQRRFSSQRYPRNESGDQMPMNSRFPSQPLPSQNPQAQQGSQAQSQ
FLHSLTAQAWPMQNMQQQTFASASQSEVPAQPVFYPQAQMSQYPSQSSEQQGLLQSNLAY
NQMWQYYYYQQQQQQQLFLQQQHLQLQQQHLQPLQQQQFVQQQQYQQQHSLYLQQQPQHQ
QLEQYQMQQQVQQQDQHPPQQWQLEQRQSEQQIGMSQIEKWNNSSKQVCD
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 001486
(1070 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2170453 - symbol:PRP39-2 species:3702 "Arabido... 1609 5.6e-167 2
ASPGD|ASPL0000046692 - symbol:AN1635 species:162425 "Emer... 556 4.8e-53 1
POMBASE|SPBC4B4.09 - symbol:usp105 "U1 snRNP-associated p... 550 2.2e-52 1
RGD|1308702 - symbol:Prpf39 "PRP39 pre-mRNA processing fa... 521 1.0e-50 2
UNIPROTKB|E1C8G8 - symbol:PRPF39 "Uncharacterized protein... 534 1.2e-50 1
UNIPROTKB|F1SI15 - symbol:PRPF39 "Uncharacterized protein... 526 8.8e-50 1
UNIPROTKB|F1PV57 - symbol:PRPF39 "Uncharacterized protein... 524 1.5e-49 1
UNIPROTKB|Q86UA1 - symbol:PRPF39 "Pre-mRNA-processing fac... 523 1.9e-49 1
UNIPROTKB|G4MRU5 - symbol:MGG_04558 "Pre-mRNA-processing ... 523 1.9e-49 1
MGI|MGI:104602 - symbol:Prpf39 "PRP39 pre-mRNA processing... 496 7.4e-48 2
FB|FBgn0039600 - symbol:CG1646 species:7227 "Drosophila m... 287 1.1e-45 3
DICTYBASE|DDB_G0283307 - symbol:prpf39 "pre-mRNA processi... 330 2.1e-44 3
ZFIN|ZDB-GENE-030616-420 - symbol:prpf39 "PRP39 pre-mRNA ... 484 3.0e-43 1
UNIPROTKB|A8E4M9 - symbol:PRPF39 "Uncharacterized protein... 416 6.7e-38 1
UNIPROTKB|D4A0B1 - symbol:D4A0B1 "Uncharacterized protein... 405 1.0e-36 1
UNIPROTKB|E2RPB9 - symbol:PRPF39 "Uncharacterized protein... 317 2.8e-27 1
SGD|S000004509 - symbol:PRP39 "U1 snRNP protein involved ... 208 6.5e-22 2
WB|WBGene00017768 - symbol:F25B4.5 species:6239 "Caenorha... 217 1.1e-14 3
CGD|CAL0004777 - symbol:PRP39 species:5476 "Candida albic... 191 6.8e-12 2
UNIPROTKB|Q5ALT2 - symbol:PRP39 "Potential spliceosomal U... 191 6.8e-12 2
DICTYBASE|DDB_G0286645 - symbol:cstf3 "cleavage stimulati... 141 2.6e-09 3
CGD|CAL0001111 - symbol:PRP42 species:5476 "Candida albic... 168 4.1e-09 1
UNIPROTKB|Q5A014 - symbol:PRP42 "Potential spliceosomal U... 168 4.1e-09 1
SGD|S000002643 - symbol:PRP42 "U1 snRNP protein involved ... 168 7.8e-09 1
UNIPROTKB|E9PLP8 - symbol:CSTF3 "Cleavage stimulation fac... 136 6.4e-08 1
TAIR|locus:2080853 - symbol:AT3G51110 species:3702 "Arabi... 155 1.2e-07 1
ZFIN|ZDB-GENE-040426-694 - symbol:crnkl1 "crooked neck pr... 107 3.0e-06 3
FB|FBgn0033859 - symbol:CG6197 species:7227 "Drosophila m... 84 3.3e-06 4
ZFIN|ZDB-GENE-040426-1997 - symbol:cstf3 "cleavage stimul... 136 5.3e-06 3
UNIPROTKB|E2R479 - symbol:CSTF3 "Uncharacterized protein"... 136 6.8e-06 2
UNIPROTKB|Q12996 - symbol:CSTF3 "Cleavage stimulation fac... 136 6.8e-06 2
MGI|MGI:1351825 - symbol:Cstf3 "cleavage stimulation fact... 136 6.8e-06 2
UNIPROTKB|Q5F4A0 - symbol:CSTF3 "Uncharacterized protein"... 136 6.8e-06 2
UNIPROTKB|F1MZT2 - symbol:CRNKL1 "Uncharacterized protein... 103 2.2e-05 2
UNIPROTKB|J9P5Z1 - symbol:CRNKL1 "Uncharacterized protein... 103 2.4e-05 2
UNIPROTKB|E1BGY7 - symbol:CSTF3 "Uncharacterized protein"... 136 2.6e-05 3
TAIR|locus:2007973 - symbol:CSTF77 species:3702 "Arabidop... 136 3.5e-05 1
WB|WBGene00006307 - symbol:suf-1 species:6239 "Caenorhabd... 139 9.4e-05 2
TAIR|locus:2161363 - symbol:AT5G45990 species:3702 "Arabi... 91 0.00011 2
UNIPROTKB|F1PYE9 - symbol:CRNKL1 "Uncharacterized protein... 103 0.00012 2
DICTYBASE|DDB_G0295719 - symbol:DDB_G0295719 "unknown" sp... 130 0.00012 1
UNIPROTKB|Q5JY65 - symbol:CRNKL1 "Crooked neck-like prote... 103 0.00013 2
MGI|MGI:1914127 - symbol:Crnkl1 "Crn, crooked neck-like 1... 103 0.00014 2
RGD|620507 - symbol:Crnkl1 "crooked neck pre-mRNA splicin... 103 0.00014 2
DICTYBASE|DDB_G0277977 - symbol:xab2 "TPR-like helical do... 102 0.00014 3
UNIPROTKB|Q9BZJ0 - symbol:CRNKL1 "Crooked neck-like prote... 103 0.00014 2
SGD|S000001800 - symbol:SRP40 "Nucleolar serine-rich prot... 126 0.00018 1
UNIPROTKB|E1BWJ0 - symbol:SART3 "Uncharacterized protein"... 101 0.00021 3
FB|FBgn0000377 - symbol:crn "crooked neck" species:7227 "... 128 0.00024 1
TAIR|locus:2152965 - symbol:AT5G41770 species:3702 "Arabi... 94 0.00025 2
UNIPROTKB|F1NF69 - symbol:SART3 "Uncharacterized protein"... 106 0.00030 3
DICTYBASE|DDB_G0278819 - symbol:DDB_G0278819 "HAT repeat-... 125 0.00031 2
DICTYBASE|DDB_G0271670 - symbol:DDB_G0271670 species:4468... 122 0.00042 1
WB|WBGene00019762 - symbol:M03F8.3 species:6239 "Caenorha... 99 0.00056 3
ASPGD|ASPL0000051943 - symbol:AN0461 species:162425 "Emer... 121 0.00069 1
UNIPROTKB|G3MZB1 - symbol:G3MZB1 "Uncharacterized protein... 123 0.00081 1
>TAIR|locus:2170453 [details] [associations]
symbol:PRP39-2 species:3702 "Arabidopsis thaliana"
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006396 "RNA processing" evidence=IEA]
InterPro:IPR003107 SMART:SM00386 EMBL:CP002688 GO:GO:0005622
GO:GO:0006396 KO:K13217 IPI:IPI00548633 RefSeq:NP_199452.2
UniGene:At.29958 ProteinModelPortal:F4KHG8 SMR:F4KHG8 PRIDE:F4KHG8
EnsemblPlants:AT5G46400.1 GeneID:834683 KEGG:ath:AT5G46400
OMA:HIKLFPH ArrayExpress:F4KHG8 Uniprot:F4KHG8
Length = 1036
Score = 1609 (571.5 bits), Expect = 5.6e-167, Sum P(2) = 5.6e-167
Identities = 335/723 (46%), Positives = 456/723 (63%)
Query: 5 ISNLESLSAEP--NSPVGF-GKQGLEEFIAEGSLDFDEWTSLLSEIEN-SCPDDIEMIGL 60
+S+ E L P +S F L+E + G+LDFDEWT L+SEIE S PDDIE + L
Sbjct: 10 VSDKEPLQRSPELDSSTDFLDNDRLKETFSSGALDFDEWTLLISEIETTSFPDDIEKLCL 69
Query: 61 VYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMST 120
VYD+FL EFPLC+GYWRKYA HK +LC+++ VEVFERAVQ+ATYSV VW YC+ +++
Sbjct: 70 VYDAFLLEFPLCHGYWRKYAYHKIKLCTLEDAVEVFERAVQAATYSVAVWLDYCAFAVAA 129
Query: 121 FEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLH 180
+EDP+DV RLF+R LSF+GKDY C T+WDKYIE+ + QQ+WSSLA ++++TL++PSKKL
Sbjct: 130 YEDPHDVSRLFERGLSFIGKDYSCCTLWDKYIEYLLGQQQWSSLANVYLRTLKYPSKKLD 189
Query: 181 HYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDL 240
YY +F+K+A + KE+++C D + S+ + E V + D+E S V+++L+ PS
Sbjct: 190 LYYKNFRKIAASLKEKIKCRIDVNGDLSSDPMEEDLVHTRHTDEEISIVVRELMGPSSSS 249
Query: 241 VRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAE 300
SKA+ Y IGEQ Y+++ QL EKI+CFE IRRPYFHVKPLD QL NWH YLSF E
Sbjct: 250 AVSKALHTYLSIGEQFYQDSRQLMEKISCFETQIRRPYFHVKPLDTNQLDNWHAYLSFGE 309
Query: 301 KQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVI 360
GDFDW + LYERCLIPCA+Y EFW RYVDF+ESKGGRE+A++AL RA+Q F+K VI
Sbjct: 310 TYGDFDWAINLYERCLIPCANYTEFWFRYVDFVESKGGRELANFALARASQTFVKSASVI 369
Query: 361 HLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEAL 420
HLFNAR+KE +GD SAA A + F+E VT KANME+RLGNF AA TY+EAL
Sbjct: 370 HLFNARFKEHVGDASAASVALSRCGEELGFGFVENVTKKANMEKRLGNFEAAVTTYREAL 429
Query: 421 -ETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLLLEELIKFTM 479
+T + T LYVQFSRL Y T SAD+A IL++G ++VP+CKLLLEEL++ M
Sbjct: 430 NKTLIGKENLETTARLYVQFSRLKYVITNSADDAAQILLEGNENVPHCKLLLEELMRLLM 489
Query: 480 VHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQ 539
+HGG + ++D +I L + D S ED E+IS+LY++F+DL GTIHD+R A +
Sbjct: 490 MHGGSRQVDLLDPIIDKELSHQADSSDGLSAEDKEEISNLYMEFIDLSGTIHDVRKALGR 549
Query: 540 HIKLFPHTVRTAYECPGRETKSLRAFIRGKRESNVASLPQPFESEH----LMPSASQDKK 595
HIKLFPH+ R R I+ +RE L Q + ++ S ++KK
Sbjct: 550 HIKLFPHSARAKLRGSRPSGNLFRELIQ-RREKTRERLNQDLLTNKGISSIVDSPPKEKK 608
Query: 596 FSPPEKSDSESGD----DATSLPSNQKSPLPENHDIR-SDGA-EVDILLSGEADSSSQDR 649
S + ++S D D + NQ L H + +D E + L ++D S +
Sbjct: 609 ESSLDSYGTQSKDAVRADYVNTEPNQGC-LTSGHLVEGNDNVIERETLCESQSDLSMGLK 667
Query: 650 MQQVPPEAAEQHSQDACDPEV-LSLDLAHQVTNENETVQASEAFSEEDDVQREYEHESKK 708
+ + E PE AH +N +TV++ + Q ++S++
Sbjct: 668 ANEGGKRSHEVSLPIQASPEHGFVTKQAHFSSNSVDTVKSDAIVIQPSGSQSPQSYQSQE 727
Query: 709 DLK 711
L+
Sbjct: 728 SLR 730
Score = 37 (18.1 bits), Expect = 5.6e-167, Sum P(2) = 5.6e-167
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 916 QQQTFASASQSEVPAQPV---FYPQAQMSQY 943
Q QT + Q+++P PV + + QM +
Sbjct: 846 QVQTSFAYPQTQIPQNPVQSNYQQEGQMQSH 876
>ASPGD|ASPL0000046692 [details] [associations]
symbol:AN1635 species:162425 "Emericella nidulans"
[GO:0006396 "RNA processing" evidence=IEA] [GO:0005685 "U1 snRNP"
evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
InterPro:IPR003107 InterPro:IPR011990 SMART:SM00386 EMBL:BN001307
GO:GO:0005622 GO:GO:0006396 eggNOG:COG0457 Gene3D:1.25.40.10
EMBL:AACD01000026 KO:K13217 HOGENOM:HOG000189748 OMA:ARYFERY
OrthoDB:EOG4DNJD8 RefSeq:XP_659239.1 ProteinModelPortal:Q5BCU5
EnsemblFungi:CADANIAT00008273 GeneID:2874721 KEGG:ani:AN1635.2
Uniprot:Q5BCU5
Length = 588
Score = 556 (200.8 bits), Expect = 4.8e-53, P = 4.8e-53
Identities = 140/443 (31%), Positives = 223/443 (50%)
Query: 26 LEEFIAEGSLDFDEWTSLLSEIE--------NSCPDDIEMIGLVYDSFLAEFPLCYGYWR 77
LE + + +F+ W L+ E NS P I + VYD FLA+FPL +GYW+
Sbjct: 19 LEAELLDDPDNFETWERLVRAAEALEGGVNRNSNPQAITTVRNVYDRFLAKFPLLFGYWK 78
Query: 78 KYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSF 137
KYAD + + + V+ER V S + SVD+W +YC+ T D + +R LF+R +
Sbjct: 79 KYADLEFSITGTEAADMVYERGVASISSSVDLWTNYCTFKAETSHDTDIIRELFERGANC 138
Query: 138 VGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAGAWKEEL 197
VG D+L H WDKYIE+E + + + I + + P + Y++ +++LA +
Sbjct: 139 VGLDFLSHPFWDKYIEYEERVEGYDKIFAILARVIEIPMHQYARYFERYRQLAQT-RPVA 197
Query: 198 ECESDSAM-EFQSEL-VLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQ 255
E + + +F+++L G V K D + + +DL R + + Y +
Sbjct: 198 ELAPPNVISQFRADLDAAAGIVAPGAKAD--AEIERDL--------RLR-LDGYHL---E 243
Query: 256 IYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERC 315
I+ + K +E+ I+RPYFHV LD+ QL NW YL F E +G + + LYERC
Sbjct: 244 IFSKTQTETTKRWTYESEIKRPYFHVTELDEGQLANWRKYLDFEEAEGSYARIQFLYERC 303
Query: 316 LIPCADYPEFWMRYVDFMESKGGREI-ASYALDRATQIFLKRL-PVIHLFNARYKEQIGD 373
L+ CA Y EFW RY +M ++ G+E RA+ +++ P L A ++E G
Sbjct: 304 LVTCAHYDEFWQRYARWMSAQPGKEEDVRNIYQRASYLYVPIANPATRLQYAYFEEMCGR 363
Query: 374 TSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLP 433
S A+ E+ + + +E + ANM RR G AA + YK L++ Q + T
Sbjct: 364 VSVAKEIH-EAILINIPNHVETIVSLANMCRRHGGLEAAIEVYKSQLDSP--QCEMSTKA 420
Query: 434 LLYVQFSRLTYTTTGSADNARDI 456
L +++RL + GS + AR +
Sbjct: 421 ALVAEWARLLWKIKGSTEEARQV 443
>POMBASE|SPBC4B4.09 [details] [associations]
symbol:usp105 "U1 snRNP-associated protein Usp105"
species:4896 "Schizosaccharomyces pombe" [GO:0000243 "commitment
complex" evidence=ISO] [GO:0000395 "mRNA 5'-splice site
recognition" evidence=IC;ISO] [GO:0005685 "U1 snRNP" evidence=IDA]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=ISO]
[GO:0030627 "pre-mRNA 5'-splice site binding" evidence=ISO]
InterPro:IPR003107 SMART:SM00386 PomBase:SPBC4B4.09 EMBL:CU329671
GenomeReviews:CU329671_GR eggNOG:COG0457 GO:GO:0000243
GO:GO:0005685 GO:GO:0000395 KO:K13217 PIR:T40481 RefSeq:NP_596426.1
ProteinModelPortal:O74970 EnsemblFungi:SPBC4B4.09.1 GeneID:2540869
KEGG:spo:SPBC4B4.09 HOGENOM:HOG000189748 OMA:ARYFERY
OrthoDB:EOG4DNJD8 NextBio:20801985 Uniprot:O74970
Length = 612
Score = 550 (198.7 bits), Expect = 2.2e-52, P = 2.2e-52
Identities = 144/502 (28%), Positives = 249/502 (49%)
Query: 36 DFDEWTSLL--SE-IE-----NSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLC 87
DFD W L+ SE +E NS I + VYD FL ++PL +GYW+KYAD + +
Sbjct: 27 DFDAWEGLVRASEHLEGGVGRNSSKQAINTLRSVYDRFLGKYPLLFGYWKKYADFEFFVA 86
Query: 88 SIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTM 147
+ ++ER + +SVD+W +YC+ M T D N+VR LF + + VG D+L H
Sbjct: 87 GAEASEHIYERGIAGIPHSVDLWTNYCAFKMETNGDANEVRELFMQGANMVGLDFLSHPF 146
Query: 148 WDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEF 207
WDKY+EFE Q+R ++ Q+ + + P + Y++ F +++ + + D
Sbjct: 147 WDKYLEFEERQERPDNVFQLLERLIHIPLHQYARYFERFVQVSQSQPIQQLLPPDVLASI 206
Query: 208 QSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKI 267
++++ E PA + + + + +++ R + Y I QI+++ K
Sbjct: 207 RADVTRE---PAKVVSAGSKQITVERGE--LEIEREMRARIYN-IHLQIFQKVQLETAKR 260
Query: 268 NCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWM 327
FE+ I+RPYFHVK LD+ QL NW YL F E +GDF + LYERCLI CA Y EFW
Sbjct: 261 WTFESEIKRPYFHVKELDEAQLVNWRKYLDFEEVEGDFQRICHLYERCLITCALYDEFWF 320
Query: 328 RYVDFMESKGGR-EIASYALDRATQIFLK-RLPVIHLFNARYKEQIGDTSAARAAFPESY 385
RY +M ++ S +RA+ IF P I + A ++E G+ ++A+A + +S
Sbjct: 321 RYARWMSAQPDHLNDVSIIYERASCIFASISRPGIRVQYALFEESQGNIASAKAIY-QSI 379
Query: 386 IDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHT--LPLLYVQFSRLT 443
+ +E V +ERR + + L + + K +T +L + +L
Sbjct: 380 LTQLPGNLEAVLGWVGLERRNAPNYDLTNAHA-VLRSIINEGKCNTGITEVLITEDIKLV 438
Query: 444 YTTTGSADNARDILIDGIKHVPNCKLLLEELIKFTMVHGGRS-HISIVDAVISNALYSRP 502
+ G + AR++ + + +C+ ++F + S + + A +SN +
Sbjct: 439 WKIEGDIELARNMFLQNAPALLDCRHFWISFLRFELEQPLNSKNYTEHHARVSNVMEMIR 498
Query: 503 DVLKVFSLEDVEDISSLYLQFL 524
+ ++ + D++ LY+++L
Sbjct: 499 NKTRL-PPRTIMDLTKLYMEYL 519
>RGD|1308702 [details] [associations]
symbol:Prpf39 "PRP39 pre-mRNA processing factor 39 homolog (S.
cerevisiae)" species:10116 "Rattus norvegicus" [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR003107 InterPro:IPR011990 SMART:SM00386 RGD:1308702
GO:GO:0005634 GO:GO:0006396 Gene3D:1.25.40.10 CTD:55015
GeneTree:ENSGT00390000005033 KO:K13217 OrthoDB:EOG49GKG9
IPI:IPI00948194 RefSeq:XP_003750219.1 RefSeq:XP_003754228.1
UniGene:Rn.12521 Ensembl:ENSRNOT00000066702 GeneID:314171
KEGG:rno:314171 UCSC:RGD:1308702 ArrayExpress:D4A5S9 Uniprot:D4A5S9
Length = 664
Score = 521 (188.5 bits), Expect = 1.0e-50, Sum P(2) = 1.0e-50
Identities = 162/584 (27%), Positives = 275/584 (47%)
Query: 7 NLESLSAEPNSPVGFGKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFL 66
+L E N P F K + + DF W LL +E + + +D F
Sbjct: 64 DLPVTETEGNFPPEFEK--FWKTVETNPQDFTGWVYLLQYVEQE--NHLMAARKAFDKFF 119
Query: 67 AEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFE--DP 124
+P CYGYW+KYAD + R +I + EV+ R +Q+ SVD+W HY + T + DP
Sbjct: 120 IHYPYCYGYWKKYADLEKRHDNIKQSDEVYRRGLQAIPLSVDLWIHYINFLKETLDPGDP 179
Query: 125 ---NDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHH 181
+ +R F+ A+ G D+ +W+ YI +E Q + ++ + L P++ H
Sbjct: 180 ETNSTIRGTFEHAVLAAGTDFRSDKLWEMYINWENEQGNLREVTAVYDRILGIPTQLYSH 239
Query: 182 YYDSFKK-LAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDD-----ETSSVIKDLLD 235
++ FK+ + +L + ++ + EL V + DD + S I+D+ D
Sbjct: 240 HFQRFKEHVQNNLPRDL-LTGEQFIQLRRELA---SVNGHNGDDGPPGDDLPSGIEDITD 295
Query: 236 PSVDLVRSKAIQKYRFIGEQIYKEASQLDE-KIN---CFENLIRRPYFHVKPLDDIQLKN 291
P+ L+ ++R I +I++E +E +++ FE I+RPYFHVKPL+ QLKN
Sbjct: 296 PA-KLITEIENMRHRII--EIHQEMFNYNEHEVSKRWTFEEGIKRPYFHVKPLEKAQLKN 352
Query: 292 WHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQ 351
W +YL F + G + VV L+ERC+I CA Y EFW++Y +ME+ E + RA
Sbjct: 353 WKEYLEFEIENGTHERVVVLFERCVISCALYEEFWIKYAKYMENHS-IEGVRHVFSRACT 411
Query: 352 IFLKRLPVIHLFNARYKEQIGDTSAARA---AFPESYIDSDSRFIEKVTFKANMERRLGN 408
+ L + P+ H+ A ++EQ G+ + AR F E + + +V+ +ERR GN
Sbjct: 412 VHLPKKPMAHMLWAAFEEQQGNINEARIILRTFEECVLGLAMVRLRRVS----LERRHGN 467
Query: 409 FVAACDTYKEALETAAEQRKFHTLPLLY-VQFSRLTYTTTGSADNARDILIDGI-KHVPN 466
A + L+ A K + Y ++ +R + + +R +L++ I K N
Sbjct: 468 MEEA----EHLLQDAIRNAKSNNESSFYAIKLARHLFKIQKNLPKSRKVLLEAIEKDKEN 523
Query: 467 CKL---LLEELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKV-FSLEDVEDISSLYLQ 522
KL LLE + + ++ D I +L P +++ FS VE +L+
Sbjct: 524 TKLYLNLLEMEYSCDLKQNEENILNCFDKAIHGSL---PIKMRITFSQRKVE-----FLE 575
Query: 523 FLDLCGTIHDIRNAWNQHIKLFPH--TVRTAYECPGRETKSLRA 564
D ++ + NA+++H L T++ E E + +A
Sbjct: 576 --DFGSDVNKLLNAYDEHQTLLKEQDTLKRKAENGSEEPEEKKA 617
Score = 39 (18.8 bits), Expect = 1.0e-50, Sum P(2) = 1.0e-50
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 655 PEAAEQHSQDACDPEVLSLDL-AHQ 678
PE + H++D +++ DL A+Q
Sbjct: 612 PEEKKAHTEDVSSAQIIDGDLQANQ 636
>UNIPROTKB|E1C8G8 [details] [associations]
symbol:PRPF39 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 SMART:SM00386 GO:GO:0005634 GO:GO:0006396
Gene3D:1.25.40.10 GeneTree:ENSGT00390000005033 OMA:GWVYLLQ
EMBL:AADN02004089 IPI:IPI00598251 Ensembl:ENSGALT00000020376
Uniprot:E1C8G8
Length = 628
Score = 534 (193.0 bits), Expect = 1.2e-50, P = 1.2e-50
Identities = 157/558 (28%), Positives = 269/558 (48%)
Query: 5 ISNLESLSAEPNSPVGFGKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDS 64
I +L++ E P+ F K + + + DF W LL +E + + +D
Sbjct: 25 IGSLQTTDIEAGFPLDFDK--FWKVVEDNPQDFTGWVYLLQYVEQE--NHLPAARKAFDK 80
Query: 65 FLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDP 124
F +P CYGYW+KYAD + R +I + EV+ R +Q+ SVD+W HY + T DP
Sbjct: 81 FFTHYPYCYGYWKKYADLERRHDNIKQSDEVYRRGLQAIPLSVDLWIHYINFLKDTL-DP 139
Query: 125 ND------VRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKK 178
+D +R ++ A+ G D+ +W+ YI +E Q + I+ + L P++
Sbjct: 140 DDPEANSTIRGAYEHAVLAAGTDFRSDRLWEMYINWEDEQGNLREVTSIYDRILGIPTQL 199
Query: 179 LHHYYDSFKK-LAGAWKEELECESDSAMEFQSELV-LEGEVPAYYK-DDETSSVIKDLLD 235
H++ FK + +L S+ ++ + EL + G D+ S +D+ D
Sbjct: 200 YSHHFQRFKDHVQNNLPRDL-LTSEQFIQLRRELASVNGHAGGDASAGDDLPSGTEDITD 258
Query: 236 PSVDLVRSKAIQKYRFIGEQIYKEASQLDE-KIN---CFENLIRRPYFHVKPLDDIQLKN 291
P+ L+ ++R I +I++E +E +++ FE I+RPYFHVKPL+ QLKN
Sbjct: 259 PA-KLITEIENMRHRII--EIHQEMFNHNEHEVSKRWTFEEGIKRPYFHVKPLEKAQLKN 315
Query: 292 WHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQ 351
W +YL F + G + VV L+ERC+I CA Y +FW++Y +ME+ E + RA
Sbjct: 316 WKEYLEFEIENGTHERVVVLFERCVISCALYEDFWIKYAKYMENHS-IEGVRHVYSRACT 374
Query: 352 IFLKRLPVIHLFNARYKEQIGDTSAARA---AFPESYIDSDSRFIEKVTFKANMERRLGN 408
I L + P++H+ A ++EQ G+ AR F E + + +V+ +ERR GN
Sbjct: 375 IHLPKKPMVHMLWAAFEEQQGNIDEARRILKTFEECILGLAMVRLRRVS----LERRHGN 430
Query: 409 FVAACDTYKEALETA--AEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIK-HVP 465
A +EA+ A + F+ + L +R + + AR +L D I+
Sbjct: 431 MEEAERLLEEAVRNAKSVSESSFYAIKL-----ARHLFKVQKNLPKARKVLSDAIEIDKE 485
Query: 466 NCKLLLEEL-IKFT--MVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQ 522
N KL L L +++ + + +S D ++ +L + V FS VE +L+
Sbjct: 486 NTKLYLNLLEMEYCGDLTQNEENILSCFDKAVNGSLSIKMRV--TFSQRKVE-----FLE 538
Query: 523 FLDLCGTIHDIRNAWNQH 540
D ++ + +A+++H
Sbjct: 539 --DFGSDVNKLLDAYDEH 554
>UNIPROTKB|F1SI15 [details] [associations]
symbol:PRPF39 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] InterPro:IPR003107 InterPro:IPR011990
SMART:SM00386 GO:GO:0005634 GO:GO:0006396 Gene3D:1.25.40.10
GeneTree:ENSGT00390000005033 OMA:GWVYLLQ EMBL:CU570961
Ensembl:ENSSSCT00000005511 Uniprot:F1SI15
Length = 667
Score = 526 (190.2 bits), Expect = 8.8e-50, P = 8.8e-50
Identities = 155/558 (27%), Positives = 271/558 (48%)
Query: 7 NLESLSAEPNSPVGFGKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFL 66
+L E N P + K + + DF W LL +E + + +D F
Sbjct: 65 DLPVTETEANFPPEYEK--FWKTVENNPQDFTGWVYLLQYVEQE--NHLMAARKAFDKFF 120
Query: 67 AEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFE--DP 124
+P CYGYW+KYAD + R +I + EV+ R +Q+ SVD+W HY + T + DP
Sbjct: 121 IHYPYCYGYWKKYADLEKRHDNIKQSDEVYRRGLQAIPLSVDLWIHYINFLKETLDPGDP 180
Query: 125 ---NDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHH 181
+ ++ F+ A+ G D+ +W+ YI +E Q + I+ + L P++ H
Sbjct: 181 ETTSTIKGTFEHAVLAAGTDFRSDRLWEMYINWENEQGNLREVTAIYDRILGIPTQLYSH 240
Query: 182 YYDSFKK-LAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDD-----ETSSVIKDLLD 235
++ FK+ + +L + ++ + EL V + DD + S I+D+ D
Sbjct: 241 HFQRFKEHVQNNLPRDL-LTGEQFIQLRRELA---SVNGHSGDDGPPGDDLPSGIEDITD 296
Query: 236 PSVDLVRSKAIQKYRFIGEQIYKEASQLDE-KIN---CFENLIRRPYFHVKPLDDIQLKN 291
P+ L+ ++R I +I++E +E +++ FE I+RPYFHVKPL+ QLKN
Sbjct: 297 PAKKLITEIENMRHRII--EIHQEMFNYNEHEVSKRWTFEEGIKRPYFHVKPLEKAQLKN 354
Query: 292 WHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQ 351
W +YL F + G + VV L+ERC+I CA Y EFW++Y +ME+ E + RA
Sbjct: 355 WKEYLEFEIENGTHERVVVLFERCVISCALYEEFWIKYAKYMENHS-IEGVRHVFSRACT 413
Query: 352 IFLKRLPVIHLFNARYKEQIGDTSAAR---AAFPESYIDSDSRFIEKVTFKANMERRLGN 408
I L + P++H+ A ++EQ G+ + AR F E + + +V+ +ERR GN
Sbjct: 414 IHLPKKPMVHMLWAAFEEQQGNINEARNILRTFEECVLGLAMVRLRRVS----LERRHGN 469
Query: 409 FVAACDTYKEALETAAEQRKFHTLPLLY-VQFSRLTYTTTGSADNARDILIDGIKH-VPN 466
A + L+ A + K + Y ++ +R + + +R +L++ I+ N
Sbjct: 470 MEEA----ERLLQDAIKNAKANNESSFYAIKLARHLFKIQKNLPKSRKVLLEAIERDKEN 525
Query: 467 CKLLLEEL-IKFT--MVHGGRSHISIVDAVISNALYSRPDVLKV-FSLEDVEDISSLYLQ 522
KL L L ++++ + + ++ D I +L P +++ FS VE +L+
Sbjct: 526 TKLYLNLLEMEYSGDLKQNEENILNCFDKAIHGSL---PIKMRITFSQRKVE-----FLE 577
Query: 523 FLDLCGTIHDIRNAWNQH 540
D ++ + NA+++H
Sbjct: 578 --DFGSDVNKLLNAYDEH 593
>UNIPROTKB|F1PV57 [details] [associations]
symbol:PRPF39 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0006396
"RNA processing" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 SMART:SM00386 GO:GO:0005634 GO:GO:0006396
Gene3D:1.25.40.10 CTD:55015 GeneTree:ENSGT00390000005033 KO:K13217
OMA:GWVYLLQ EMBL:AAEX03005706 RefSeq:XP_851059.2
Ensembl:ENSCAFT00000022300 GeneID:480305 KEGG:cfa:480305
Uniprot:F1PV57
Length = 667
Score = 524 (189.5 bits), Expect = 1.5e-49, P = 1.5e-49
Identities = 159/566 (28%), Positives = 275/566 (48%)
Query: 2 EVQISNLESL---SAEPNSPVGFGKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMI 58
E +I+N L E N P + K + + DF W LL +E + +
Sbjct: 57 ENEIANAVDLPVTETEANFPPEYEK--FWKTVENNPQDFTGWVYLLQYVEQE--NHLMAA 112
Query: 59 GLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSM 118
+D F +P CYGYW+KYAD + R +I + EV+ R +Q+ SVD+W HY +
Sbjct: 113 RKAFDKFFIHYPYCYGYWKKYADLEKRHDNIKQSDEVYRRGLQAIPLSVDLWIHYINFLK 172
Query: 119 STFE--DP---NDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLR 173
T + DP + +R F+ A+ G D+ +W+ YI +E Q + I+ + L
Sbjct: 173 ETLDPGDPETNSTIRGTFEHAVLAAGTDFRSDRLWEMYINWENEQGNLREVTAIYDRILG 232
Query: 174 FPSKKLHHYYDSFKK-LAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDD-----ETS 227
P++ H++ FK+ + +L + ++ + EL V + DD +
Sbjct: 233 IPTQLYSHHFQRFKEHVQNNLPRDL-LTGEQFIQLRRELA---SVNGHSGDDGPPGDDLP 288
Query: 228 SVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDE-KIN---CFENLIRRPYFHVKP 283
S I+D+ DP+ L+ ++R I +I++E +E +++ FE I+RPYFHVKP
Sbjct: 289 SGIEDITDPA-KLITEIENMRHRII--EIHQEMFNYNEHEVSKRWTFEEGIKRPYFHVKP 345
Query: 284 LDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIAS 343
L+ QLKNW +YL F + G + VV L+ERC+I CA Y EFW++Y +ME+ E
Sbjct: 346 LEKAQLKNWKEYLEFEIENGTHERVVVLFERCVISCALYEEFWIKYAKYMENHS-IEGVR 404
Query: 344 YALDRATQIFLKRLPVIHLFNARYKEQIGDTSAAR---AAFPESYIDSDSRFIEKVTFKA 400
+ RA I L + P++H+ A ++EQ G+ + AR F E + + +V+
Sbjct: 405 HVFSRACTIHLPKKPMVHMLWAAFEEQQGNINEARNILRTFEECVLGLAMVRLRRVS--- 461
Query: 401 NMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLY-VQFSRLTYTTTGSADNARDILID 459
+ERR GN A + L+ A + K + Y ++ +R + + +R +L++
Sbjct: 462 -LERRHGNMEEA----EHLLQDAIKNAKSNNESSFYAIKLARHLFKIQKNLPKSRKVLLE 516
Query: 460 GIKH-VPNCKLLLEEL-IKFT--MVHGGRSHISIVDAVISNALYSRPDVLKV-FSLEDVE 514
I+ N KL L L ++++ + + ++ D I +L P +++ FS VE
Sbjct: 517 AIERDKENTKLYLNLLEMEYSGDLKQNEENILNCFDKAIHGSL---PIKMRITFSQRKVE 573
Query: 515 DISSLYLQFLDLCGTIHDIRNAWNQH 540
+L+ D ++ + NA+++H
Sbjct: 574 -----FLE--DFGSDVNKLLNAYDEH 592
>UNIPROTKB|Q86UA1 [details] [associations]
symbol:PRPF39 "Pre-mRNA-processing factor 39" species:9606
"Homo sapiens" [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR003107 InterPro:IPR011990 SMART:SM00386 GO:GO:0005634
GO:GO:0008380 GO:GO:0006397 Gene3D:1.25.40.10 eggNOG:COG5107
EMBL:AL121809 CTD:55015 HOGENOM:HOG000010277 HOVERGEN:HBG082194
KO:K13217 OMA:GWVYLLQ OrthoDB:EOG49GKG9 EMBL:AK001990 EMBL:BC051886
EMBL:BC125126 EMBL:BC125127 IPI:IPI00789246 IPI:IPI00878754
RefSeq:NP_060392.3 UniGene:Hs.274337 ProteinModelPortal:Q86UA1
SMR:Q86UA1 IntAct:Q86UA1 STRING:Q86UA1 PhosphoSite:Q86UA1
DMDM:223590245 PaxDb:Q86UA1 PRIDE:Q86UA1 Ensembl:ENST00000355765
GeneID:55015 KEGG:hsa:55015 UCSC:uc001wvy.4 UCSC:uc001wwa.1
GeneCards:GC14P045553 H-InvDB:HIX0011621 HGNC:HGNC:20314
HPA:HPA001176 MIM:614907 neXtProt:NX_Q86UA1 PharmGKB:PA142671127
InParanoid:Q86UA1 GenomeRNAi:55015 NextBio:58381
ArrayExpress:Q86UA1 Bgee:Q86UA1 CleanEx:HS_PRPF39
Genevestigator:Q86UA1 GermOnline:ENSG00000185246 Uniprot:Q86UA1
Length = 669
Score = 523 (189.2 bits), Expect = 1.9e-49, P = 1.9e-49
Identities = 156/551 (28%), Positives = 268/551 (48%)
Query: 14 EPNSPVGFGKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCY 73
E N P + K + + DF W LL +E + + +D F +P CY
Sbjct: 74 EANFPPEYEK--FWKTVENNPQDFTGWVYLLQYVEQE--NHLMAARKAFDRFFIHYPYCY 129
Query: 74 GYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFE--DP---NDVR 128
GYW+KYAD + R +I EV+ R +Q+ SVD+W HY + T + DP N +R
Sbjct: 130 GYWKKYADLEKRHDNIKPSDEVYRRGLQAIPLSVDLWIHYINFLKETLDPGDPETNNTIR 189
Query: 129 RLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKK 188
F+ A+ G D+ +W+ YI +E Q + I+ + L P++ H++ FK+
Sbjct: 190 GTFEHAVLAAGTDFRSDRLWEMYINWENEQGNLREVTAIYDRILGIPTQLYSHHFQRFKE 249
Query: 189 -LAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDD-----ETSSVIKDLLDPSVDLVR 242
+ +L + ++ + EL V + DD + S I+D+ DP+ L+
Sbjct: 250 HVQNNLPRDL-LTGEQFIQLRRELA---SVNGHSGDDGPPGDDLPSGIEDITDPA-KLIT 304
Query: 243 SKAIQKYRFIGEQIYKEASQLDE-KIN---CFENLIRRPYFHVKPLDDIQLKNWHDYLSF 298
++R I +I++E +E +++ FE I+RPYFHVKPL+ QLKNW +YL F
Sbjct: 305 EIENMRHRII--EIHQEMFNYNEHEVSKRWTFEEGIKRPYFHVKPLEKAQLKNWKEYLEF 362
Query: 299 AEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLP 358
+ G + VV L+ERC+I CA Y EFW++Y +ME+ E + RA I L + P
Sbjct: 363 EIENGTHERVVVLFERCVISCALYEEFWIKYAKYMENHS-IEGVRHVFSRACTIHLPKKP 421
Query: 359 VIHLFNARYKEQIGDTSAAR---AAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDT 415
++H+ A ++EQ G+ + AR F E + + +V+ +ERR GN A
Sbjct: 422 MVHMLWAAFEEQQGNINEARNILKTFEECVLGLAMVRLRRVS----LERRHGNLEEA--- 474
Query: 416 YKEALETAAEQRKFHTLPLLY-VQFSRLTYTTTGSADNARDILIDGIKH-VPNCKLLLEE 473
+ L+ A + K + Y V+ +R + + +R +L++ I+ N KL L
Sbjct: 475 -EHLLQDAIKNAKSNNESSFYAVKLARHLFKIQKNLPKSRKVLLEAIERDKENTKLYLNL 533
Query: 474 L-IKFT--MVHGGRSHISIVDAVISNALYSRPDVLKV-FSLEDVEDISSLYLQFLDLCGT 529
L ++++ + + ++ D + +L P +++ FS VE +L+ D
Sbjct: 534 LEMEYSGDLKQNEENILNCFDKAVHGSL---PIKMRITFSQRKVE-----FLE--DFGSD 583
Query: 530 IHDIRNAWNQH 540
++ + NA+++H
Sbjct: 584 VNKLLNAYDEH 594
>UNIPROTKB|G4MRU5 [details] [associations]
symbol:MGG_04558 "Pre-mRNA-processing factor 39"
species:242507 "Magnaporthe oryzae 70-15" [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR003107 SMART:SM00386
GO:GO:0005622 GO:GO:0006396 EMBL:CM001231 KO:K13217
RefSeq:XP_003710923.1 ProteinModelPortal:G4MRU5
EnsemblFungi:MGG_04558T0 GeneID:2677921 KEGG:mgr:MGG_04558
Uniprot:G4MRU5
Length = 586
Score = 523 (189.2 bits), Expect = 1.9e-49, P = 1.9e-49
Identities = 136/432 (31%), Positives = 211/432 (48%)
Query: 37 FDEWTSLLSEIE--------NSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCS 88
F+ W L+ E NS P + + YD FL +FPL +GYW+KYAD + +
Sbjct: 31 FENWEKLVRACEALDGGLTRNSSPQALATLRDAYDRFLLKFPLLFGYWKKYADLEFTIAG 90
Query: 89 IDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMW 148
+ V+ER S T SVD+W YCS M T P VR LF+R + VG D++ H W
Sbjct: 91 PESAEMVYERGCASITNSVDLWTEYCSFKMETTHVPQLVRDLFERGAACVGLDFMAHPFW 150
Query: 149 DKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQ 208
+KY+E+E Q+ ++ +I + + P + YY+ F + + ++ F+
Sbjct: 151 NKYLEYEERQEAHENIFKILQRVIHIPMYQYARYYERFSTMVHTRALDDVVSAELQARFK 210
Query: 209 SELVLEGEVPAYYKDDETSSVIKDLLDPSVDL-VRSKAIQKYRFIGEQIYKEASQLDEKI 267
+E+ E E AY V K +P + +R K Y GE K +++ ++
Sbjct: 211 TEI--EAEAAAY-------GVTKT--EPEFEQEMRRKVDAHY---GEIFTKTQTEVTKRW 256
Query: 268 NCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWM 327
+E I+RPYFHV L+ +L NW YL F E +G F LYERCL+ CA Y EFW
Sbjct: 257 -LYEAEIKRPYFHVTELEKKELSNWRKYLDFEEAEGSFVRTAFLYERCLVTCAFYDEFWF 315
Query: 328 RYVDFMESKGGR--EIASYALDRATQIFLK-RLPVIHLFNARYKEQIGDTSAARAAFPES 384
RY +M ++ + E+ + L RA IF+ P I L A ++E G + AR
Sbjct: 316 RYARWMSAQPDKTEEVRNIYL-RAATIFVPISRPGIRLQFAYFEESCGRVAMAREVHNAI 374
Query: 385 YIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTY 444
+ IE + AN+ERR + A + K+ +E+ + T +L +++ L +
Sbjct: 375 LLRLPG-CIEVIISLANLERRHNDIDTAIEVLKQQIESP--EVDIWTKAVLVTEWASLLW 431
Query: 445 TTTGSADNARDI 456
T G+A+ AR +
Sbjct: 432 TVKGTAEEARAV 443
>MGI|MGI:104602 [details] [associations]
symbol:Prpf39 "PRP39 pre-mRNA processing factor 39 homolog
(yeast)" species:10090 "Mus musculus" [GO:0003674
"molecular_function" evidence=ND] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 SMART:SM00386 MGI:MGI:104602 GO:GO:0005634
GO:GO:0008380 GO:GO:0006397 Gene3D:1.25.40.10 eggNOG:COG5107
HOGENOM:HOG000010277 HOVERGEN:HBG082194 OrthoDB:EOG49GKG9
EMBL:AK017379 EMBL:AK154170 EMBL:AK168462 EMBL:BC029153
IPI:IPI00170040 IPI:IPI00761305 UniGene:Mm.283339
ProteinModelPortal:Q8K2Z2 SMR:Q8K2Z2 STRING:Q8K2Z2
PhosphoSite:Q8K2Z2 PaxDb:Q8K2Z2 PRIDE:Q8K2Z2 UCSC:uc007nqw.1
UCSC:uc007nra.1 InParanoid:Q8K2Z2 ChiTaRS:PRPF39
Genevestigator:Q8K2Z2 GermOnline:ENSMUSG00000035597 Uniprot:Q8K2Z2
Length = 665
Score = 496 (179.7 bits), Expect = 7.4e-48, Sum P(2) = 7.4e-48
Identities = 163/586 (27%), Positives = 272/586 (46%)
Query: 7 NLESLSAEPNSPVGFGKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFL 66
NL AE + P F K + + DF W LL +E + + +D F
Sbjct: 65 NLPVTEAEGDFPPEFEK--FWKTVEMNPQDFTGWVYLLQYVEQE--NHLMAARKAFDKFF 120
Query: 67 AEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPND 126
+P CYGYW+KYAD + R +I + EV+ R +Q+ SVD+W HY + T E P D
Sbjct: 121 VHYPYCYGYWKKYADLEKRHDNIKQSDEVYRRGLQAIPLSVDLWIHYINFLKETLE-PGD 179
Query: 127 ------VRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLH 180
+R F+ A+ G D+ +W+ YI +E Q + ++ + L P++
Sbjct: 180 QETNTTIRGTFEHAVLAAGTDFRSDKLWEMYINWENEQGNLREVTAVYDRILGIPTQLYS 239
Query: 181 HYYDSFKK-LAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDD-----ETSSVIKDLL 234
H++ FK+ + +L + ++ + EL V + DD + S I+D+
Sbjct: 240 HHFQRFKEHVQNNLPRDL-LTGEQFIQLRRELA---SVNGHSGDDGPPGDDLPSGIEDI- 294
Query: 235 DPSVDLVRSKAIQKYRFIGEQIYKEASQLDE----KINCFENLIRRPYFHVKPLDDIQ-L 289
P+ L+ ++R I +I++E +E K FE I+RPYFHVKPL+ Q
Sbjct: 295 SPA-KLITEIENMRHRII--EIHQEMFNYNEHEVSKRWTFEEGIKRPYFHVKPLEKAQPK 351
Query: 290 KNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRA 349
KNW +YL F + G + VV L+ERC+I CA Y EFW++Y +ME+ E + RA
Sbjct: 352 KNWKEYLEFEIENGTHERVVVLFERCVISCALYEEFWIKYAKYMENHS-IEGVRHVFSRA 410
Query: 350 TQIFLKRLPVIHLFNARYKEQIGDTSAARA---AFPESYIDSDSRFIEKVTFKANMERRL 406
+ L + P+ H+ A ++EQ G+ + AR F E + + +V+ +ERR
Sbjct: 411 CTVHLPKKPMAHMLWAAFEEQQGNINEARIILRTFEECVLGLAMVRLRRVS----LERRH 466
Query: 407 GNFVAACDTYKEALETAAEQRKFHTLPLLY-VQFSRLTYTTTGSADNARDILIDGI-KHV 464
GN A + L+ A + K + Y ++ +R + + +R +L++ I K
Sbjct: 467 GNMEEA----EHLLQDAIKNAKSNNESSFYAIKLARHLFKIQKNLPKSRKVLLEAIEKDK 522
Query: 465 PNCKL---LLEELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKV-FSLEDVEDISSLY 520
N KL LLE + + ++ D I +L P +++ FS VE +
Sbjct: 523 ENTKLYLNLLEMEYSCDLKQNEENILNCFDKAIHGSL---PIKMRITFSQRKVE-----F 574
Query: 521 LQFLDLCGTIHDIRNAWNQHIKLFPH--TVRTAYECPGRETKSLRA 564
L+ D ++ + NA+++H L T++ E E + +A
Sbjct: 575 LE--DFGSDVNKLLNAYDEHQTLLKEQDTLKRKAENGSEEPEEKKA 618
Score = 38 (18.4 bits), Expect = 7.4e-48, Sum P(2) = 7.4e-48
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 655 PEAAEQHSQDACDPEVLSLDL-AHQ 678
PE + H++D +++ DL A+Q
Sbjct: 613 PEEKKAHTEDLSSAQIIDGDLQANQ 637
>FB|FBgn0039600 [details] [associations]
symbol:CG1646 species:7227 "Drosophila melanogaster"
[GO:0005685 "U1 snRNP" evidence=ISS] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=ISS] [GO:0005634 "nucleus" evidence=IC]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] InterPro:IPR003107 InterPro:IPR011990
SMART:SM00386 InterPro:IPR001623 EMBL:AE014297 Gene3D:1.25.40.10
SMART:SM00271 GO:GO:0000398 GO:GO:0000381 eggNOG:COG5107
GO:GO:0005685 GeneTree:ENSGT00390000005033 KO:K13217 EMBL:AY051737
RefSeq:NP_001097957.1 RefSeq:NP_001097958.1 RefSeq:NP_651634.1
RefSeq:NP_733256.2 RefSeq:NP_788753.1 RefSeq:NP_788754.2
UniGene:Dm.31288 ProteinModelPortal:Q7KRW8 SMR:Q7KRW8 IntAct:Q7KRW8
MINT:MINT-820225 STRING:Q7KRW8 PaxDb:Q7KRW8 PRIDE:Q7KRW8
EnsemblMetazoa:FBtr0085322 GeneID:43399 KEGG:dme:Dmel_CG1646
UCSC:CG1646-RB FlyBase:FBgn0039600 InParanoid:Q7KRW8 OMA:IRWENES
OrthoDB:EOG4ZKH2F PhylomeDB:Q7KRW8 GenomeRNAi:43399 NextBio:833726
Bgee:Q7KRW8 Uniprot:Q7KRW8
Length = 1066
Score = 287 (106.1 bits), Expect = 1.1e-45, Sum P(3) = 1.1e-45
Identities = 57/161 (35%), Positives = 90/161 (55%)
Query: 30 IAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSI 89
+ E S DF WT LL ++N D E YD+FL+ +P CYGYWRKYAD++ R
Sbjct: 372 VKEDSTDFTGWTYLLQYVDNE--SDAEAAREAYDTFLSHYPYCYGYWRKYADYEKRKGIK 429
Query: 90 DKVVEVFERAVQSATYSVDVWFHYCSLSMSTF-EDPNDVRRLFKRALSFVGKDYLCHTMW 148
+VFER +++ SVD+W HY S +D VR ++RA+ G ++ +W
Sbjct: 430 ANCYKVFERGLEAIPLSVDLWIHYLMHVKSNHGDDETFVRSQYERAVKACGLEFRSDKLW 489
Query: 149 DKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKL 189
D YI +E +R+ + QI+ + L P++ + ++D+F+ L
Sbjct: 490 DAYIRWENESKRYHRVVQIYDRLLAIPTQGYNGHFDNFQDL 530
Score = 270 (100.1 bits), Expect = 1.1e-45, Sum P(3) = 1.1e-45
Identities = 83/249 (33%), Positives = 127/249 (51%)
Query: 200 ESDSAMEF--QSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIY 257
ESDS + +SE PA D S + L D V +R +AI R +++
Sbjct: 621 ESDSTTDLTTESESSHAASKPAMQID---FSDLSTLNDEEVVSIRDRAISARR----KVH 673
Query: 258 K-EASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCL 316
K S + + + FE I+RPYFHVKPL+ QLKNW DYL F ++GD + V+ L+ERCL
Sbjct: 674 KLTVSAVTARWS-FEEGIKRPYFHVKPLERAQLKNWKDYLDFEIEKGDRERVLVLFERCL 732
Query: 317 IPCADYPEFWM---RYVDFMESKGGR-EIASYALDRATQIFLKRLPVIHLFNARYKE-QI 371
I CA Y EFW+ RY++ +E + G ++ RA +I P +HL A ++E Q+
Sbjct: 733 IACALYDEFWLKMLRYLESLEDQSGVVDLVRDVYRRACRIHHPDKPSLHLMWAAFEECQM 792
Query: 372 GDTSAARAAFPESYIDSDSRFIEKVTFKA-NMERRLGNFVAACDTYKEALETAAEQRKFH 430
AA ID + +++++ N+ERR G + YK +E+ +
Sbjct: 793 NFDDAAEIL---QRIDQRCPNLLQLSYRRINVERRRGALDKCRELYKHYIESTKNKGIAG 849
Query: 431 TLPLLYVQF 439
+L + Y +F
Sbjct: 850 SLAIKYARF 858
Score = 65 (27.9 bits), Expect = 1.1e-45, Sum P(3) = 1.1e-45
Identities = 37/164 (22%), Positives = 71/164 (43%)
Query: 669 EVLSLDLAHQVTNENETVQASEAFSEEDDVQREYEHE-SKKDLKPLSLEGLSLDPGGNDS 727
+++ L L +E E V+ + F D++ + + +++ ++ L G S G D+
Sbjct: 889 QMIDLCLQRPKVDEQEVVEIMDKFMARADIEPDQKVLFAQRKVEFLEDFG-STARGLQDA 947
Query: 728 PGSLCATSHECEAPQKTNFSHESMLKSEAPRETSLSDGSVLGASQNNNGSHFAPSSMGTQ 787
+L + + QK + S S + +E + GS A+ NN GS A +
Sbjct: 948 QRALQQALTKAKEAQKKSDGSPSRKNSSSSKEGPVPTGSA-AAAYNNGGSAAAVAGYNYG 1006
Query: 788 ASSSAPIQTRTVS--PSSS---ASHQNFIPE-AHSHPQTPANSG 825
A++ Q T + PS + AS+ ++ + + ANSG
Sbjct: 1007 AANPYYGQQNTAAAYPSQTPQQASYDSYYNQWGYGSGGASANSG 1050
Score = 46 (21.3 bits), Expect = 1.1e-19, Sum P(3) = 1.1e-19
Identities = 35/147 (23%), Positives = 54/147 (36%)
Query: 688 ASEAFSEEDDVQREYEHESKKDLKPLSLEGLSLDPGG-NDSPGSLCATSHECEAPQKTNF 746
+S + ++D +RE E + KD K E GG SP T + E+ T+
Sbjct: 571 SSSSSKDKDSKEREREKDKDKD-KDKDKEKRETVGGGVGKSPKDTSETQVD-ESDSTTDL 628
Query: 747 SHESMLKSEAPRETSLSDGSVLGASQNNNGSHFAPSSMGTQASSSAPIQTRTVSPSSSA- 805
+ ES A + D S L + S S+ + TVS ++
Sbjct: 629 TTESESSHAASKPAMQIDFSDLSTLNDEE----VVSIRDRAISARRKVHKLTVSAVTARW 684
Query: 806 SHQNFI--PEAHSHPQTPANSGRNWHE 830
S + I P H P A +NW +
Sbjct: 685 SFEEGIKRPYFHVKPLERAQL-KNWKD 710
Score = 38 (18.4 bits), Expect = 6.9e-43, Sum P(3) = 6.9e-43
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 906 TAQAWPMQNMQQQTFAS 922
TA A+P Q QQ ++ S
Sbjct: 1017 TAAAYPSQTPQQASYDS 1033
Score = 37 (18.1 bits), Expect = 1.1e-19, Sum P(3) = 1.1e-19
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 195 EELECESDSAMEFQSELVLEGEVPA 219
EEL + + +E++ E E+PA
Sbjct: 234 EELPAPQRAELPEDAEVISEDELPA 258
>DICTYBASE|DDB_G0283307 [details] [associations]
symbol:prpf39 "pre-mRNA processing factor 39"
species:44689 "Dictyostelium discoideum" [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0003674 "molecular_function"
evidence=ND] InterPro:IPR003107 InterPro:IPR008847
InterPro:IPR011990 Pfam:PF05843 SMART:SM00386
dictyBase:DDB_G0283307 GO:GO:0005634 GenomeReviews:CM000153_GR
GO:GO:0006397 Gene3D:1.25.40.10 EMBL:AAFI02000052 KO:K13217
eggNOG:NOG298273 RefSeq:XP_639156.1 ProteinModelPortal:Q54R91
EnsemblProtists:DDB0233547 GeneID:8624026 KEGG:ddi:DDB_G0283307
InParanoid:Q54R91 OMA:ADHEYAH Uniprot:Q54R91
Length = 699
Score = 330 (121.2 bits), Expect = 2.1e-44, Sum P(3) = 2.1e-44
Identities = 65/177 (36%), Positives = 104/177 (58%)
Query: 12 SAEPNSPVGFGKQG-LEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFP 70
S SP ++ L + + L F++WT L+ IE + +DIE I VY FL EFP
Sbjct: 12 STPTTSPQNLSEEDKLWKIVQTNPLAFNQWTFLIGVIEKT--NDIEKIRKVYSEFLNEFP 69
Query: 71 LCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRL 130
LC+ YW+++ADH+ + + +E+FE+AV S +SVD+W +YC+ + +++R +
Sbjct: 70 LCFLYWKRFADHEYAHNNTTQSIEIFEKAVSSIPHSVDIWLNYCTHLIDKSYPVDEIRSV 129
Query: 131 FKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFK 187
FKR ++ +G DY W+KYIEFE+ Q+ + LA IF L+ P + L + + FK
Sbjct: 130 FKRGINIIGTDYQSGKFWEKYIEFEMGQEN-NELASIFNSILKTPLENLQIFNEKFK 185
Score = 229 (85.7 bits), Expect = 2.1e-44, Sum P(3) = 2.1e-44
Identities = 57/195 (29%), Positives = 104/195 (53%)
Query: 254 EQIYKEASQLDEKINCFENLI-RRPYFHVKPLDDIQLKNWHDYLSFAEKQGDF--DWVVK 310
E+ Y E + K + FE+++ +R +FH++P+D++ L W Y ++ E + V+K
Sbjct: 221 EKWYHETLEKISKRSNFESIVNKRFFFHIQPIDEMTLSVWRSYFNYMESDPSVTQEEVIK 280
Query: 311 LYERCLIPCADYPEFWMRYVDFM-ESKGG---REIASYALDRATQIFLKRLPVIHLFNAR 366
L+ERCL+PC Y EFW++Y+ F+ ES G E+ +RAT+IFLK+ IHL +
Sbjct: 281 LFERCLVPCCYYSEFWLKYIKFLQESYVGDNKNELIESIFERATKIFLKKRADIHLEYSL 340
Query: 367 YKEQ-IGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETA-A 424
+ E +G+ A + E+ +E + + +RR + A +K+ L + +
Sbjct: 341 FVESTLGNIEKAFSIL-ENIHSLLPTHLEVILRLVSFKRRNHSIQQANQFFKKVLTSLQS 399
Query: 425 EQRKFHTLPLLYVQF 439
+ + + L + Y+ F
Sbjct: 400 DSKTYPFLSINYISF 414
Score = 61 (26.5 bits), Expect = 5.9e-27, Sum P(3) = 5.9e-27
Identities = 37/154 (24%), Positives = 65/154 (42%)
Query: 340 EIASYALDRATQIFLKRLPVIHLFNARYKEQ-IGDTSAARAAFPESYIDSDSRFIEKVTF 398
E+ +RAT+IFLK+ IHL + + E +G+ A + E+ +E +
Sbjct: 314 ELIESIFERATKIFLKKRADIHLEYSLFVESTLGNIEKAFSIL-ENIHSLLPTHLEVILR 372
Query: 399 KANMERRLGNFVAACDTYKEALETA-AEQRKFHTLPLLYVQF-----SRLTYTTTGS--A 450
+ +RR + A +K+ L + ++ + + L + Y+ F L G A
Sbjct: 373 LVSFKRRNHSIQQANQFFKKVLTSLQSDSKTYPFLSINYISFLLSNKQSLQGEKEGEEEA 432
Query: 451 DN-------ARDILIDGIKHVPNCKLLLEELIKF 477
D +R++L I P+ KLL I F
Sbjct: 433 DKIVDVFETSREVLKKSISLYPDSKLLWLYFINF 466
Score = 47 (21.6 bits), Expect = 1.6e-25, Sum P(3) = 1.6e-25
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 285 DDIQLKNWHDYLSFAEKQGDFDWVVKLYE 313
DD +L W+DYL F Q D D +K Y+
Sbjct: 556 DDEKLNIWNDYLEF-NLQYDND--IKGYK 581
Score = 37 (18.1 bits), Expect = 2.1e-44, Sum P(3) = 2.1e-44
Identities = 5/29 (17%), Positives = 15/29 (51%)
Query: 680 TNENETVQASEAFSEEDDVQREYEHESKK 708
+N N +Q + ++ Q ++ H+ ++
Sbjct: 644 SNNNGVIQNNSYIYQQQQAQPQHHHQQQQ 672
>ZFIN|ZDB-GENE-030616-420 [details] [associations]
symbol:prpf39 "PRP39 pre-mRNA processing factor 39
homolog (yeast)" species:7955 "Danio rerio" [GO:0006396 "RNA
processing" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR003107 InterPro:IPR011990 SMART:SM00386
ZFIN:ZDB-GENE-030616-420 GO:GO:0005634 GO:GO:0008380 GO:GO:0006397
Gene3D:1.25.40.10 eggNOG:COG5107 EMBL:AL591492 EMBL:BC116540
IPI:IPI00481955 RefSeq:NP_001004520.1 UniGene:Dr.340
ProteinModelPortal:Q1JPZ7 STRING:Q1JPZ7 PRIDE:Q1JPZ7
Ensembl:ENSDART00000061672 GeneID:368864 KEGG:dre:368864 CTD:55015
GeneTree:ENSGT00390000005033 HOGENOM:HOG000010277
HOVERGEN:HBG082194 InParanoid:Q1JPZ7 KO:K13217 OMA:GWVYLLQ
OrthoDB:EOG49GKG9 NextBio:20813235 ArrayExpress:Q1JPZ7 Bgee:Q1JPZ7
Uniprot:Q1JPZ7
Length = 752
Score = 484 (175.4 bits), Expect = 3.0e-43, P = 3.0e-43
Identities = 142/550 (25%), Positives = 260/550 (47%)
Query: 14 EPNSPVGFGKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGL--VYDSFLAEFPL 71
EP P + + L + + + DF+ W LL +E + ++G +D+F +P
Sbjct: 145 EPELPTEYER--LSKVVEDNPEDFNGWVYLLQYVEQ----ENHLLGSRKAFDAFFLHYPY 198
Query: 72 CYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPND----- 126
CYGYW+KYAD + + I EV+ R +Q+ SVD+W HY + +D +D
Sbjct: 199 CYGYWKKYADIERKHGYIQMADEVYRRGLQAIPLSVDLWLHYITFLREN-QDTSDGEAES 257
Query: 127 -VRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDS 185
+R ++ A+ G D+ +W+ YI +E Q + +++ I+ + L P++ ++
Sbjct: 258 RIRASYEHAVLACGTDFRSDRLWEAYIAWETEQGKLANVTAIYDRLLCIPTQLYSQHFQK 317
Query: 186 FKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVR-SK 244
FK + + + + + EL P+ +D ET + ++L + DL +K
Sbjct: 318 FKDHVQSNNPKHFLSEEEFVSLRVELA-NANKPSGDEDAETEAPGEELPPGTEDLPDPAK 376
Query: 245 AIQKYRFIGEQIYKEASQL----DEKIN---CFENLIRRPYFHVKPLDDIQLKNWHDYLS 297
+ + + ++ + ++ + +++ FE I+RPYFHVK L+ QL NW +YL
Sbjct: 377 RVTEIENMRHKVIETRQEMFNHNEHEVSKRWAFEEGIKRPYFHVKALEKTQLNNWREYLD 436
Query: 298 FAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRL 357
F + G + VV L+ERCLI CA Y EFW++Y ++ES E + +A + L +
Sbjct: 437 FELENGTPERVVVLFERCLIACALYEEFWIKYAKYLESYS-TEAVRHIYKKACTVHLPKK 495
Query: 358 PVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYK 417
P +HL A ++EQ G AR+ + + ++ + ++ERR GN A +
Sbjct: 496 PNVHLLWAAFEEQQGSIDEARSILKAVEVSVPGLAMVRLR-RVSLERRHGNMEEAEALLQ 554
Query: 418 EALETA--AEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGI-KHVPNCKLLLEEL 474
+A+ + + F++ V+ +R S A+ +L++ + K N KL L L
Sbjct: 555 DAITNGRNSSESSFYS-----VKLARQLVKVQKSIGRAKKVLLEAVEKDETNPKLYLN-L 608
Query: 475 IKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGT-IHDI 533
++ + + + + A AL S +LE S + FL+ G+ I+ +
Sbjct: 609 LELEYSGDVQQNEAEIIACFDRALSSS------MALESRITFSQRKVDFLEDFGSDINTL 662
Query: 534 RNAWNQHIKL 543
A+ QH +L
Sbjct: 663 MAAYEQHQRL 672
>UNIPROTKB|A8E4M9 [details] [associations]
symbol:PRPF39 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] InterPro:IPR003107 InterPro:IPR011990
SMART:SM00386 GO:GO:0005634 GO:GO:0006396 Gene3D:1.25.40.10
CTD:55015 GeneTree:ENSGT00390000005033 HOGENOM:HOG000010277
HOVERGEN:HBG082194 KO:K13217 OMA:GWVYLLQ OrthoDB:EOG49GKG9
eggNOG:NOG298273 EMBL:DAAA02052958 EMBL:BC149776 IPI:IPI00710325
RefSeq:NP_001103259.1 UniGene:Bt.27128 Ensembl:ENSBTAT00000003373
GeneID:505547 KEGG:bta:505547 InParanoid:A8E4M9 NextBio:20867193
Uniprot:A8E4M9
Length = 548
Score = 416 (151.5 bits), Expect = 6.7e-38, P = 6.7e-38
Identities = 132/470 (28%), Positives = 231/470 (49%)
Query: 95 VFERAVQSATYSVDVWFHYCSLSMSTFE--DP---NDVRRLFKRALSFVGKDYLCHTMWD 149
V+ R +Q+ SVD+W HY + T + DP + VR F+ A+ G D+ +W+
Sbjct: 30 VYRRGLQAIPLSVDLWIHYINFLKETLDPGDPETNSTVRGTFEHAVLAAGTDFRSDRLWE 89
Query: 150 KYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKK-LAGAWKEELECESDSAMEFQ 208
YI +E Q + I+ + L P++ H++ FK + +L + ++ +
Sbjct: 90 MYINWENEQGNLREVTAIYDRILGIPTQLYSHHFQRFKDHVQNNLPRDL-LTGEQFIQLR 148
Query: 209 SELVLEGEVPAYYKDD-----ETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQL 263
EL V + DD + S I+D+ DP+ L+ ++R I +I++E
Sbjct: 149 RELA---SVNGHSGDDGPPGDDLPSGIEDITDPA-KLITEIENMRHRII--EIHQEMFNY 202
Query: 264 DE-KIN---CFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPC 319
+E +++ FE I+RPYFHVKPL+ QLKNW +YL F + G + VV L+ERC+I C
Sbjct: 203 NEHEVSKRWTFEEGIKRPYFHVKPLEKAQLKNWKEYLEFEIENGTHERVVVLFERCVISC 262
Query: 320 ADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAAR- 378
A Y EFW++Y +ME+ E + RA I L + P++H+ A ++EQ G+ + AR
Sbjct: 263 ALYEEFWIKYAKYMENHS-IEGVRHVFSRACTIHLPKKPMVHMLWAAFEEQQGNINEARN 321
Query: 379 --AAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLY 436
F E + + +V+ +ERR GN A +EA++ A +
Sbjct: 322 ILRTFEECVLGLAMVRLRRVS----LERRHGNMEEAERLLQEAIKNAKSNNESS---FYA 374
Query: 437 VQFSRLTYTTTGSADNARDILIDGIKH-VPNCKLLLEELIKFTMVHGG---RSHISIVDA 492
++ +R + + +R +L++ I+ N KL L L M + G ++ +I++
Sbjct: 375 IKLARHLFKIQKNLPKSRKVLLEAIERDKENTKLYLNLL---EMEYSGDLKQNEDNILNC 431
Query: 493 VISNALY-SRPDVLKV-FSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQH 540
A++ S P +++ FS VE +L+ D ++ + NA+++H
Sbjct: 432 -FDKAIHGSLPIKMRITFSQRKVE-----FLE--DFGSDVNKLLNAYDEH 473
>UNIPROTKB|D4A0B1 [details] [associations]
symbol:D4A0B1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0005622 "intracellular" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 SMART:SM00386 GO:GO:0005622 GO:GO:0006396
Gene3D:1.25.40.10 GeneTree:ENSGT00390000005033 IPI:IPI00951935
Ensembl:ENSRNOT00000065090 ArrayExpress:D4A0B1 Uniprot:D4A0B1
Length = 426
Score = 405 (147.6 bits), Expect = 1.0e-36, P = 1.0e-36
Identities = 116/400 (29%), Positives = 197/400 (49%)
Query: 95 VFERAVQSATYSVDVWFHYCSLSMSTFE--DP---NDVRRLFKRALSFVGKDYLCHTMWD 149
V+ R +Q+ SVD+W HY + T + DP + +R F+ A+ G D+ +W+
Sbjct: 30 VYRRGLQAIPLSVDLWIHYINFLKETLDPGDPETNSTIRGTFEHAVLAAGTDFRSDKLWE 89
Query: 150 KYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKK-LAGAWKEELECESDSAMEFQ 208
YI +E Q + ++ + L P++ H++ FK+ + +L + ++ +
Sbjct: 90 MYINWENEQGNLREVTAVYDRILGIPTQLYSHHFQRFKEHVQNNLPRDL-LTGEQFIQLR 148
Query: 209 SELVLEGEVPAYYKDD-----ETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQL 263
EL V + DD + S I+D+ DP+ L+ ++R I +I++E
Sbjct: 149 RELA---SVNGHNGDDGPPGDDLPSGIEDITDPA-KLITEIENMRHRII--EIHQEMFNY 202
Query: 264 DE-KIN---CFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPC 319
+E +++ FE I+RPYFHVKPL+ QLKNW +YL F + G + VV L+ERC+I C
Sbjct: 203 NEHEVSKRWTFEEGIKRPYFHVKPLEKAQLKNWKEYLEFEIENGTHERVVVLFERCVISC 262
Query: 320 ADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARA 379
A Y EFW++Y +ME+ E + RA + L + P+ H+ A ++EQ G+ + AR
Sbjct: 263 ALYEEFWIKYAKYMENHS-IEGVRHVFSRACTVHLPKKPMAHMLWAAFEEQQGNINEARI 321
Query: 380 ---AFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLY 436
F E + + +V+ +ERR GN A + L+ A K + Y
Sbjct: 322 ILRTFEECVLGLAMVRLRRVS----LERRHGNMEEA----EHLLQDAIRNAKSNNESSFY 373
Query: 437 -VQFSRLTYTTTGSADNARDILIDGI-KHVPNCKLLLEEL 474
++ +R + + +R +L++ I K N KL L L
Sbjct: 374 AIKLARHLFKIQKNLPKSRKVLLEAIEKDKENTKLYLNLL 413
>UNIPROTKB|E2RPB9 [details] [associations]
symbol:PRPF39 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] InterPro:IPR003107
SMART:SM00386 GO:GO:0005622 GO:GO:0006396
GeneTree:ENSGT00390000005033 EMBL:AAEX03005706
Ensembl:ENSCAFT00000022296 Uniprot:E2RPB9
Length = 299
Score = 317 (116.6 bits), Expect = 2.8e-27, P = 2.8e-27
Identities = 79/249 (31%), Positives = 131/249 (52%)
Query: 95 VFERAVQSATYSVDVWFHYCSLSMSTFE--DP---NDVRRLFKRALSFVGKDYLCHTMWD 149
V+ R +Q+ SVD+W HY + T + DP + +R F+ A+ G D+ +W+
Sbjct: 30 VYRRGLQAIPLSVDLWIHYINFLKETLDPGDPETNSTIRGTFEHAVLAAGTDFRSDRLWE 89
Query: 150 KYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKK-LAGAWKEELECESDSAMEFQ 208
YI +E Q + I+ + L P++ H++ FK+ + +L + ++ +
Sbjct: 90 MYINWENEQGNLREVTAIYDRILGIPTQLYSHHFQRFKEHVQNNLPRDL-LTGEQFIQLR 148
Query: 209 SELVLEGEVPAYYKDD-----ETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQL 263
EL V + DD + S I+D+ DP+ L+ ++R I +I++E
Sbjct: 149 RELA---SVNGHSGDDGPPGDDLPSGIEDITDPA-KLITEIENMRHRII--EIHQEMFNY 202
Query: 264 DE-KIN---CFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPC 319
+E +++ FE I+RPYFHVKPL+ QLKNW +YL F + G + VV L+ERC+I C
Sbjct: 203 NEHEVSKRWTFEEGIKRPYFHVKPLEKAQLKNWKEYLEFEIENGTHERVVVLFERCVISC 262
Query: 320 ADYPEFWMR 328
A Y EFW++
Sbjct: 263 ALYEEFWIK 271
>SGD|S000004509 [details] [associations]
symbol:PRP39 "U1 snRNP protein involved in splicing"
species:4932 "Saccharomyces cerevisiae" [GO:0005622 "intracellular"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005685 "U1 snRNP"
evidence=IDA] [GO:0000243 "commitment complex" evidence=IGI]
[GO:0000395 "mRNA 5'-splice site recognition" evidence=IGI]
[GO:0030627 "pre-mRNA 5'-splice site binding" evidence=IGI]
[GO:0071004 "U2-type prespliceosome" evidence=IDA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR003107 SMART:SM00386 SGD:S000004509 EMBL:BK006946
eggNOG:COG0457 EMBL:Z47816 GO:GO:0000243 GO:GO:0071004
GO:GO:0005685 GO:GO:0000395 GeneTree:ENSGT00390000005033 KO:K13217
OrthoDB:EOG4DNJD8 EMBL:L29224 EMBL:AY692912 PIR:S47920
RefSeq:NP_013667.1 ProteinModelPortal:P39682 DIP:DIP-812N
IntAct:P39682 MINT:MINT-612602 STRING:P39682 PaxDb:P39682
PRIDE:P39682 EnsemblFungi:YML046W GeneID:854960 KEGG:sce:YML046W
CYGD:YML046w HOGENOM:HOG000115710 OMA:NGHPGIA NextBio:978042
Genevestigator:P39682 GermOnline:YML046W Uniprot:P39682
Length = 629
Score = 208 (78.3 bits), Expect = 6.5e-22, Sum P(2) = 6.5e-22
Identities = 52/198 (26%), Positives = 102/198 (51%)
Query: 8 LESLSAEPNSPVGFGKQGLEEFIA----EGSLDFDEWTSL---LSEIENSC-----PDDI 55
+E + P++ G Q L++ A LD+ + +SL + IE + P+D
Sbjct: 9 IEDIEPRPDALRGLDTQFLQDNTALVQAYRGLDWSDISSLTQMVDVIEQTVVKYGNPNDS 68
Query: 56 EMIGL--VYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHY 113
+ L + L ++PL +G+W+++A + +L + K + V +V+ S+++W Y
Sbjct: 69 IKLALETILWQILRKYPLLFGFWKRFATIEYQLFGLKKSIAVLATSVKWFPTSLELWCDY 128
Query: 114 CSLSMSTFEDPND---VRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQ 170
L++ +PN+ +R F+ A +GK +L H WDK+IEFE+ Q+ W ++ +I+
Sbjct: 129 --LNVLCVNNPNETDFIRNNFEIAKDLIGKQFLSHPFWDKFIEFEVGQKNWHNVQRIYEY 186
Query: 171 TLRFPSKKLHHYYDSFKK 188
+ P + ++ S+KK
Sbjct: 187 IIEVPLHQYARFFTSYKK 204
Score = 134 (52.2 bits), Expect = 6.5e-22, Sum P(2) = 6.5e-22
Identities = 30/99 (30%), Positives = 56/99 (56%)
Query: 241 VRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFA- 299
+ K ++ R I + K + ++E I FE+ I++P+F++ + + L+NW YL F
Sbjct: 206 LNEKNLKTTRNIDIVLRKTQTTVNE-IWQFESKIKQPFFNLGQVLNDDLENWSRYLKFVT 264
Query: 300 --EKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESK 336
K D ++V+ +++RCLIPC + WM Y+ ++ K
Sbjct: 265 DPSKSLDKEFVMSVFDRCLIPCLYHENTWMMYIKWLTKK 303
>WB|WBGene00017768 [details] [associations]
symbol:F25B4.5 species:6239 "Caenorhabditis elegans"
[GO:0005622 "intracellular" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0007281 "germ cell
development" evidence=IMP] InterPro:IPR003107 InterPro:IPR011990
SMART:SM00386 GO:GO:0009792 GO:GO:0005622 GO:GO:0006396
Gene3D:1.25.40.10 GO:GO:0007281 EMBL:FO080538
GeneTree:ENSGT00390000005033 KO:K13217 PIR:T25725
RefSeq:NP_504495.1 ProteinModelPortal:Q22961 SMR:Q22961
STRING:Q22961 PaxDb:Q22961 EnsemblMetazoa:F25B4.5.1
EnsemblMetazoa:F25B4.5.2 GeneID:178955 KEGG:cel:CELE_F25B4.5
UCSC:F25B4.5.1 CTD:178955 WormBase:F25B4.5 eggNOG:NOG298273
HOGENOM:HOG000018990 InParanoid:Q22961 OMA:VLLELRY NextBio:903274
Uniprot:Q22961
Length = 710
Score = 217 (81.4 bits), Expect = 1.1e-14, Sum P(3) = 1.1e-14
Identities = 46/148 (31%), Positives = 83/148 (56%)
Query: 10 SLSAEPNSPVGFGKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEF 69
SL P+ FG ++ +A DFD W ++L++++ S DD++ Y SFL+ +
Sbjct: 78 SLMTRPSVASHFGTPPID--VA----DFDNWVNILAKVDQS--DDVDFAREKYRSFLSRY 129
Query: 70 PLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCS--LSMSTFEDPNDV 127
P CYG+W+KYA+++ ++ +I + V+E+ + S S+D+W Y + ++ F P +
Sbjct: 130 PNCYGFWQKYAEYEKKMGNIAEAKAVWEKGIISIPLSIDLWLGYTADVKNIKNFP-PESL 188
Query: 128 RRLFKRALSFVGKDYLCHTMWDKYIEFE 155
R L+ RA+ G +Y +W + I FE
Sbjct: 189 RDLYARAIEIAGLEYQSDRLWLEAIGFE 216
Score = 201 (75.8 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
Identities = 85/336 (25%), Positives = 154/336 (45%)
Query: 14 EPNSPVGFGKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCY 73
+ + V F ++ F++ + W +E E +I V++ + PL
Sbjct: 110 DQSDDVDFAREKYRSFLSRYPNCYGFWQKY-AEYEKKM-GNIAEAKAVWEKGIISIPLSI 167
Query: 74 GYWRKY-ADHK-ARLCSIDKVVEVFERAVQSA--TYSVD-VWFHYCSLSMSTFEDP---- 124
W Y AD K + + + +++ RA++ A Y D +W + + D
Sbjct: 168 DLWLGYTADVKNIKNFPPESLRDLYARAIEIAGLEYQSDRLWLEAIGFERAVYMDELCKG 227
Query: 125 --N-DVRR---LFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLA-QIFVQTLRFPSK 177
N +R LF + LS + + +D+Y+++ + + L+ + + + ++ K
Sbjct: 228 NTNASCKRIGVLFDKLLST--PTFHAPSHFDRYVQYLNTIEPHLLLSDREYEEIMKMVCK 285
Query: 178 KLHHYYDSFKKLAGAWKEELECES--DSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLD 235
+L S ++L + C+S + + +E EG P T + ++ D
Sbjct: 286 QLGK---SIEELVQQVQLSYICQSGENGMLNIMTESA-EGTFPI------TVNSLQH--D 333
Query: 236 PS-VDLVRSKAIQKYRFIGEQIYKEASQLDEKINC-FENLIRRPYFHVKPLDDIQLKNWH 293
P+ + L+R + + + + I ++ KE +I FE I+RPYFHVKPLD QL NW
Sbjct: 334 PTALQLIRGEIVARRKRIYDKNMKEC-----EIRAGFEANIKRPYFHVKPLDYPQLFNWM 388
Query: 294 DYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRY 329
YL F K+G + V L++RCLIPC+ Y EFW++Y
Sbjct: 389 SYLDFEIKEGHEERVKILFDRCLIPCSLYEEFWIKY 424
Score = 57 (25.1 bits), Expect = 1.1e-14, Sum P(3) = 1.1e-14
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 321 DYPEF--WMRYVDFMESKGGREIASYALDR 348
DYP+ WM Y+DF +G E DR
Sbjct: 380 DYPQLFNWMSYLDFEIKEGHEERVKILFDR 409
Score = 46 (21.3 bits), Expect = 1.5e-13, Sum P(2) = 1.5e-13
Identities = 19/90 (21%), Positives = 45/90 (50%)
Query: 257 YKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFA-EKQGDFDWVVKLYERC 315
Y + S+ D K+ + ++++ + P + +QL + + ++++ E + D V++ ++
Sbjct: 541 YHQKSRRDPKLA--QKVLKKA-ISIDPFN-LQLYSQYVDIAYSSESMSELD-VIQSFDVA 595
Query: 316 L---IPCADYPEFWMRYVDFMESKGGREIA 342
L + D F R +DF+E G +A
Sbjct: 596 LDSNLRLEDKVRFSQRKLDFLEELGNNILA 625
Score = 44 (20.5 bits), Expect = 1.1e-14, Sum P(3) = 1.1e-14
Identities = 11/39 (28%), Positives = 21/39 (53%)
Query: 436 YVQFSRLTYTTTGSADNARDILIDGIKHVP-NCKLLLEE 473
+++++R T+ T S +R+I + H P + L L E
Sbjct: 421 WIKYARWTWKTYKSKTKSREIYMKAKIHCPTSLNLALSE 459
Score = 37 (18.1 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
Identities = 10/43 (23%), Positives = 18/43 (41%)
Query: 298 FAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGRE 340
F E +FD +K+ + Y +RY+ + K +E
Sbjct: 462 FEESVENFDDAIKILDNFREEYPGYVLLELRYLGVLRRKSEKE 504
>CGD|CAL0004777 [details] [associations]
symbol:PRP39 species:5476 "Candida albicans" [GO:0000375 "RNA
splicing, via transesterification reactions" evidence=ISO]
[GO:0000395 "mRNA 5'-splice site recognition" evidence=IEA;ISO]
[GO:0000243 "commitment complex" evidence=IEA;ISO] [GO:0005685 "U1
snRNP" evidence=IEA;ISO] [GO:0030627 "pre-mRNA 5'-splice site
binding" evidence=IEA;ISO] [GO:0071004 "U2-type prespliceosome"
evidence=IEA] InterPro:IPR003107 SMART:SM00386 CGD:CAL0004777
eggNOG:COG0457 EMBL:AACQ01000008 EMBL:AACQ01000007 GO:GO:0000243
GO:GO:0005685 GO:GO:0000395 KO:K13217 RefSeq:XP_722403.1
RefSeq:XP_722540.1 GeneID:3635832 GeneID:3635925
KEGG:cal:CaO19.1492 KEGG:cal:CaO19.9069 Uniprot:Q5ALT2
Length = 655
Score = 191 (72.3 bits), Expect = 6.8e-12, Sum P(2) = 6.8e-12
Identities = 64/269 (23%), Positives = 128/269 (47%)
Query: 99 AVQSATYSVDVWFHYCSLSMSTFEDPNDV---RRLFKRALSFVGKDYLCHTMWDKYIEFE 155
AV++ S+ +W Y S + +D D R +K+AL G D+ H +WD IEFE
Sbjct: 2 AVENYPNSISLWTQYLSSILIHDKDKTDTELFRNAYKQALIHNGYDFNSHPIWDMAIEFE 61
Query: 156 ISQQRWSS-LAQIFVQTLRFPSKKLHHYYDSFKKLAGAWK-EELECESDSAMEFQSELVL 213
+Q + S L +++++ ++ P + YY+ F ++ ++ +++ SD ++ +E
Sbjct: 62 TNQSKQSKELLELYLRIIKIPLYQYAQYYNQFSEINKQFEIQQIITSSDQLNQYVNEF-- 119
Query: 214 EGEVPAYYKDD----ETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINC 269
G+ + DD E +I D +S+ + ++F E + E + +I
Sbjct: 120 -GK---NHLDDLSLLEKHQIIDDFTASIFSNTQSRVNKNWQF--ESLL-ETQEFTLEIGI 172
Query: 270 FENLIRRPYFHVKPLDDIQLKNWHDYL-SFAEKQGD--FDWVVKLYERCLIP-CADYPEF 325
N ++ I + H + ++A+K + F+ V L++RCLIP C D E
Sbjct: 173 SNN--NNNNNNIAKEKPIWINYLHQEIDTYAKKPNNDQFELVCTLFQRCLIPNCYD-SEI 229
Query: 326 WMRYVDFMESKGGREIASYALDRATQIFL 354
W++Y+DF+ + + + D+ +I++
Sbjct: 230 WLKYLDFINNSSLSKQEKF--DKQQEIYI 256
Score = 56 (24.8 bits), Expect = 6.8e-12, Sum P(2) = 6.8e-12
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 472 EELIKFTMVHGGRSHISIV--DAVISNALYSRPDVLKVFSLED 512
+ LI F ++ GRS +I+ D ISN+LY +K ++++
Sbjct: 493 DNLINFLKLNDGRSDETIIMKDLEISNSLYYNKTTIKRHAMKN 535
>UNIPROTKB|Q5ALT2 [details] [associations]
symbol:PRP39 "Potential spliceosomal U1 snRNP protein
Prp39" species:237561 "Candida albicans SC5314" [GO:0000243
"commitment complex" evidence=ISO] [GO:0000375 "RNA splicing, via
transesterification reactions" evidence=ISO] [GO:0000395 "mRNA
5'-splice site recognition" evidence=ISO] [GO:0005685 "U1 snRNP"
evidence=ISO] [GO:0030627 "pre-mRNA 5'-splice site binding"
evidence=ISO] InterPro:IPR003107 SMART:SM00386 CGD:CAL0004777
eggNOG:COG0457 EMBL:AACQ01000008 EMBL:AACQ01000007 GO:GO:0000243
GO:GO:0005685 GO:GO:0000395 KO:K13217 RefSeq:XP_722403.1
RefSeq:XP_722540.1 GeneID:3635832 GeneID:3635925
KEGG:cal:CaO19.1492 KEGG:cal:CaO19.9069 Uniprot:Q5ALT2
Length = 655
Score = 191 (72.3 bits), Expect = 6.8e-12, Sum P(2) = 6.8e-12
Identities = 64/269 (23%), Positives = 128/269 (47%)
Query: 99 AVQSATYSVDVWFHYCSLSMSTFEDPNDV---RRLFKRALSFVGKDYLCHTMWDKYIEFE 155
AV++ S+ +W Y S + +D D R +K+AL G D+ H +WD IEFE
Sbjct: 2 AVENYPNSISLWTQYLSSILIHDKDKTDTELFRNAYKQALIHNGYDFNSHPIWDMAIEFE 61
Query: 156 ISQQRWSS-LAQIFVQTLRFPSKKLHHYYDSFKKLAGAWK-EELECESDSAMEFQSELVL 213
+Q + S L +++++ ++ P + YY+ F ++ ++ +++ SD ++ +E
Sbjct: 62 TNQSKQSKELLELYLRIIKIPLYQYAQYYNQFSEINKQFEIQQIITSSDQLNQYVNEF-- 119
Query: 214 EGEVPAYYKDD----ETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINC 269
G+ + DD E +I D +S+ + ++F E + E + +I
Sbjct: 120 -GK---NHLDDLSLLEKHQIIDDFTASIFSNTQSRVNKNWQF--ESLL-ETQEFTLEIGI 172
Query: 270 FENLIRRPYFHVKPLDDIQLKNWHDYL-SFAEKQGD--FDWVVKLYERCLIP-CADYPEF 325
N ++ I + H + ++A+K + F+ V L++RCLIP C D E
Sbjct: 173 SNN--NNNNNNIAKEKPIWINYLHQEIDTYAKKPNNDQFELVCTLFQRCLIPNCYD-SEI 229
Query: 326 WMRYVDFMESKGGREIASYALDRATQIFL 354
W++Y+DF+ + + + D+ +I++
Sbjct: 230 WLKYLDFINNSSLSKQEKF--DKQQEIYI 256
Score = 56 (24.8 bits), Expect = 6.8e-12, Sum P(2) = 6.8e-12
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 472 EELIKFTMVHGGRSHISIV--DAVISNALYSRPDVLKVFSLED 512
+ LI F ++ GRS +I+ D ISN+LY +K ++++
Sbjct: 493 DNLINFLKLNDGRSDETIIMKDLEISNSLYYNKTTIKRHAMKN 535
>DICTYBASE|DDB_G0286645 [details] [associations]
symbol:cstf3 "cleavage stimulation factor subunit 3"
species:44689 "Dictyostelium discoideum" [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0005622
"intracellular" evidence=IEA] [GO:0006379 "mRNA cleavage"
evidence=ISS] [GO:0006378 "mRNA polyadenylation" evidence=ISS]
[GO:0003723 "RNA binding" evidence=ISS] InterPro:IPR003107
InterPro:IPR008847 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF05843 PROSITE:PS50293 SMART:SM00386 dictyBase:DDB_G0286645
GO:GO:0005634 GenomeReviews:CM000153_GR GO:GO:0006378 GO:GO:0003723
EMBL:AAFI02000089 Gene3D:1.25.40.10 GO:GO:0006379 eggNOG:COG5107
KO:K14408 RefSeq:XP_637594.1 ProteinModelPortal:Q54LG7 PRIDE:Q54LG7
EnsemblProtists:DDB0233707 GeneID:8625734 KEGG:ddi:DDB_G0286645
InParanoid:Q54LG7 OMA:MARDIFE ProtClustDB:CLSZ2430079
Uniprot:Q54LG7
Length = 1065
Score = 141 (54.7 bits), Expect = 2.6e-09, Sum P(3) = 2.6e-09
Identities = 40/175 (22%), Positives = 84/175 (48%)
Query: 26 LEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKAR 85
LE I D + WT LL+E+++ P I + +Y FL+ FP YW+ Y + + +
Sbjct: 168 LENRINNDMYDTEAWTLLLNEVQSQ-P--ISIARDIYKRFLSVFPTAGRYWKLYVEEEMK 224
Query: 86 LCSIDKVVEVFERAVQSATYSVDVWFHYCS----LSMSTFEDPNDVRRLFKRALSFVGKD 141
+ D V ++F ++S +V+ W Y + + E+ ++ + F+ AL +G D
Sbjct: 225 EKNYDIVEKIFFENLRSVK-NVEFWKSYIAYIKQIKGDKVENREEIIKAFEFALESIGMD 283
Query: 142 YLCHTMWDKYIEF--------EISQ-QRWSSLAQIFVQTLRFPSKKLHHYYDSFK 187
++W YI+F + + Q+ +++ +++ + + P L + Y ++
Sbjct: 284 ISSTSIWTDYIQFLKDEKASTQFEEGQKMTAIRKLYQRAIENPMHDLDNIYKEYE 338
Score = 92 (37.4 bits), Expect = 2.6e-09, Sum P(3) = 2.6e-09
Identities = 46/226 (20%), Positives = 82/226 (36%)
Query: 248 KYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGD-FD 306
KY+ +Y++ L E I N++ +P ++ Q++ W +++ FD
Sbjct: 359 KYQH-ARNVYRDRKSLLEGI--LRNMLAKPP-RSSDKEEHQVRLWRKLITYERSNPQKFD 414
Query: 307 WV------VKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVI 360
V + Y +CL+ YP+ W ++ G DR+ K L I
Sbjct: 415 AVTLRNRVIATYNQCLLCLYHYPDIWYEAATYLADCGDSSGCIAMFDRSLIALPKNL-FI 473
Query: 361 HLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEAL 420
H A Y E A+ + E + ++ + + + RR +K A
Sbjct: 474 HFAYADYLESQKKQPQAKEIY-EKILQANPEPLVWIQYM-KFSRRTERIEGPRKIFKRAK 531
Query: 421 ETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPN 466
T +H +Y+ + Y ARDI G+K P+
Sbjct: 532 STP--DCTYH----VYIALGLIEYYINQDTRMARDIFEIGLKKFPS 571
Score = 48 (22.0 bits), Expect = 3.4e-09, Sum P(4) = 3.4e-09
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 795 QTRTVSPSSSASHQNFIPEAHSHPQTPANSGRNWHEQQNPD 835
Q SP+ S + IP PQ P H+++ PD
Sbjct: 926 QANRTSPTLS-NETLIIPNKPQQPQQPQPQQTQTHKRKQPD 965
Score = 47 (21.6 bits), Expect = 4.3e-09, Sum P(4) = 4.3e-09
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 643 DSSSQDRMQQVPPEAAEQHSQD 664
D S+ ++ QQ PP+ Q Q+
Sbjct: 966 DESNNEQQQQPPPQQPPQQQQE 987
Score = 43 (20.2 bits), Expect = 2.6e-09, Sum P(3) = 2.6e-09
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 911 PMQNMQQQTFASASQSEVPAQPVFYPQAQMSQYP 944
P Q QQQ + + +QP+ Q Q Q P
Sbjct: 787 PQQQQQQQ-----QPTPISSQPISQQQQQQQQQP 815
Score = 39 (18.8 bits), Expect = 2.6e-08, Sum P(4) = 2.6e-08
Identities = 12/42 (28%), Positives = 17/42 (40%)
Query: 901 FLHSLTAQAWPMQNMQQQTFASASQSEVPAQPVFYPQAQMSQ 942
FL+ Q Q +QQQ Q ++ Q + Q Q Q
Sbjct: 886 FLNQQQLQL-QQQQLQQQQLQLQQQQQLQLQQIQQHQQQQQQ 926
Score = 37 (18.1 bits), Expect = 3.4e-09, Sum P(4) = 3.4e-09
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 579 QPFESEHLMPSASQDKKFSPPEKSDSESGDD--ATSLPSNQ 617
QP S+ + + +Q + PP +S +LPSNQ
Sbjct: 821 QPISSQPSLQTNTQQQGNQPPNRSGLPDFIFYFLQNLPSNQ 861
>CGD|CAL0001111 [details] [associations]
symbol:PRP42 species:5476 "Candida albicans" [GO:0003723 "RNA
binding" evidence=IEA;ISO] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IEA;ISO] [GO:0005685 "U1 snRNP"
evidence=IEA;ISO] [GO:0071004 "U2-type prespliceosome"
evidence=IEA] InterPro:IPR003107 SMART:SM00386 CGD:CAL0001111
GO:GO:0003723 eggNOG:COG0457 GO:GO:0000398 EMBL:AACQ01000091
EMBL:AACQ01000090 GO:GO:0005685 RefSeq:XP_715099.1
RefSeq:XP_715150.1 ProteinModelPortal:Q5A014 GeneID:3643177
GeneID:3643241 KEGG:cal:CaO19.11852 KEGG:cal:CaO19.4374
Uniprot:Q5A014
Length = 393
Score = 168 (64.2 bits), Expect = 4.1e-09, P = 4.1e-09
Identities = 57/299 (19%), Positives = 132/299 (44%)
Query: 39 EWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFER 98
EW +++ +++ ++ Y+SFL +FP + YW +YA+ + +L + +++ R
Sbjct: 33 EWNEKRGINKSTSEEELNVLRTSYNSFLEKFPFQFKYWIRYAEWEFKLGNTSTAEQIYLR 92
Query: 99 AVQSA-TYSVDVWFHYCSLSMSTFEDP-NDVRRLFKRALSFVGKDYLCHTMWDKYIEFEI 156
+ + ++ +++W Y + ++T D +++ + F+ A +G + ++ Y+ F
Sbjct: 93 GLNTQLSHCIELWISYLNFKINTINDNISEILQKFEAARDLIGFHFFGFEFYELYLSFLD 152
Query: 157 SQQRWSS-LAQIFVQTLRFPSK-KLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVLE 214
+ + ++ + + LR + ++HY +KK + L + A + +
Sbjct: 153 NYKNDNNEFEKKYYILLRIILEIPIYHYGIFYKKWFDLI-DNLSKDEKLAKQIAPYIAPA 211
Query: 215 GEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENLI 274
E+ A + +S+ +L D A Q + F ++Y+ +L K N
Sbjct: 212 NEI-ATLASKKNTSIFNELKKRFTDAYI--ATQYHSF---ELYEFEKKLIPKNN------ 259
Query: 275 RRPYFHVKPLDDIQLKNWHDYLSFAE-KQGDFDWVVKLYERCLIPCADYPEFWMRYVDF 332
+ P +L W Y+ + E KQ ++ +Y R L +YP+ W ++ D+
Sbjct: 260 KNPQQDNDLRSRQELDAWMSYIDYLEIKQYPIKFIELVYYRFLYNARNYPQTWSKFADY 318
>UNIPROTKB|Q5A014 [details] [associations]
symbol:PRP42 "Potential spliceosomal U1 snRNP protein"
species:237561 "Candida albicans SC5314" [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISO] [GO:0003723 "RNA binding"
evidence=ISO] [GO:0005685 "U1 snRNP" evidence=ISO]
InterPro:IPR003107 SMART:SM00386 CGD:CAL0001111 GO:GO:0003723
eggNOG:COG0457 GO:GO:0000398 EMBL:AACQ01000091 EMBL:AACQ01000090
GO:GO:0005685 RefSeq:XP_715099.1 RefSeq:XP_715150.1
ProteinModelPortal:Q5A014 GeneID:3643177 GeneID:3643241
KEGG:cal:CaO19.11852 KEGG:cal:CaO19.4374 Uniprot:Q5A014
Length = 393
Score = 168 (64.2 bits), Expect = 4.1e-09, P = 4.1e-09
Identities = 57/299 (19%), Positives = 132/299 (44%)
Query: 39 EWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFER 98
EW +++ +++ ++ Y+SFL +FP + YW +YA+ + +L + +++ R
Sbjct: 33 EWNEKRGINKSTSEEELNVLRTSYNSFLEKFPFQFKYWIRYAEWEFKLGNTSTAEQIYLR 92
Query: 99 AVQSA-TYSVDVWFHYCSLSMSTFEDP-NDVRRLFKRALSFVGKDYLCHTMWDKYIEFEI 156
+ + ++ +++W Y + ++T D +++ + F+ A +G + ++ Y+ F
Sbjct: 93 GLNTQLSHCIELWISYLNFKINTINDNISEILQKFEAARDLIGFHFFGFEFYELYLSFLD 152
Query: 157 SQQRWSS-LAQIFVQTLRFPSK-KLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVLE 214
+ + ++ + + LR + ++HY +KK + L + A + +
Sbjct: 153 NYKNDNNEFEKKYYILLRIILEIPIYHYGIFYKKWFDLI-DNLSKDEKLAKQIAPYIAPA 211
Query: 215 GEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENLI 274
E+ A + +S+ +L D A Q + F ++Y+ +L K N
Sbjct: 212 NEI-ATLASKKNTSIFNELKKRFTDAYI--ATQYHSF---ELYEFEKKLIPKNN------ 259
Query: 275 RRPYFHVKPLDDIQLKNWHDYLSFAE-KQGDFDWVVKLYERCLIPCADYPEFWMRYVDF 332
+ P +L W Y+ + E KQ ++ +Y R L +YP+ W ++ D+
Sbjct: 260 KNPQQDNDLRSRQELDAWMSYIDYLEIKQYPIKFIELVYYRFLYNARNYPQTWSKFADY 318
>SGD|S000002643 [details] [associations]
symbol:PRP42 "U1 snRNP protein involved in splicing"
species:4932 "Saccharomyces cerevisiae" [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA;IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IMP]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005685 "U1 snRNP"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0071004 "U2-type
prespliceosome" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] SGD:S000002643 EMBL:BK006938 GO:GO:0003723
eggNOG:COG0457 EMBL:Z49701 GO:GO:0000398 GO:GO:0071004
GO:GO:0005685 GeneTree:ENSGT00390000005033 OrthoDB:EOG4DNJD8
EMBL:AF020682 PIR:S54531 RefSeq:NP_010521.1
ProteinModelPortal:Q03776 SMR:Q03776 DIP:DIP-2836N IntAct:Q03776
MINT:MINT-619717 STRING:Q03776 PaxDb:Q03776 EnsemblFungi:YDR235W
GeneID:851821 KEGG:sce:YDR235W CYGD:YDR235w HOGENOM:HOG000115713
OMA:FWEMYLE NextBio:969692 Genevestigator:Q03776 GermOnline:YDR235W
Uniprot:Q03776
Length = 544
Score = 168 (64.2 bits), Expect = 7.8e-09, P = 7.8e-09
Identities = 75/317 (23%), Positives = 134/317 (42%)
Query: 52 PDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATY-SVDVW 110
P +++I Y S L EFP Y+ +A + +L ++ ++F+R +Q+ S+ +W
Sbjct: 50 PQLLKLIRCTYSSMLNEFPYLENYYIDFALLEYKLGNVSMSHKIFQRGLQAFNQRSLLLW 109
Query: 111 FHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLA--QIF 168
Y + + + ++ A +VG + WD Y+E +IS + SS +
Sbjct: 110 TSYLKFCNNVISHQKQLFKKYETAEEYVGLHFFSGEFWDLYLE-QISSRCTSSKKYWNVL 168
Query: 169 VQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSS 228
+ L P LH SF K W + ++ D ++ S+L + E+ K D S
Sbjct: 169 RKILEIP---LH----SFSKFYALWLQRIDDIMD--LKQLSQLTSKDELLKKLKIDINYS 219
Query: 229 VIKD-LLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDI 287
K L + ++ + Y + Q+ + S + KI + N P V D+I
Sbjct: 220 GRKGPYLQDAKKKLKKITKEMYMVVQYQVLEIYSIFESKI--YINYYTSPETLVSS-DEI 276
Query: 288 QLKNWHDYLSFAEKQGDFDWVVKL-YERCLIPCADYPEFWMRYVDFM-ESKGGREIASYA 345
+ W YL + D + L ++R L+P A Y W++Y ++ SK A
Sbjct: 277 E--TWIKYLDYTITL-QTDSLTHLNFQRALLPLAHYDLVWIKYSKWLINSKNDLLGAKNV 333
Query: 346 LDRATQIFLKRLPVIHL 362
L + LK+ +I L
Sbjct: 334 LLMGLKFSLKKTEIIKL 350
>UNIPROTKB|E9PLP8 [details] [associations]
symbol:CSTF3 "Cleavage stimulation factor subunit 3"
species:9606 "Homo sapiens" [GO:0005622 "intracellular"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
InterPro:IPR003107 InterPro:IPR011990 SMART:SM00386 GO:GO:0005622
GO:GO:0006396 Gene3D:1.25.40.10 EMBL:AC131263 HGNC:HGNC:2485
IPI:IPI00982702 ProteinModelPortal:E9PLP8 SMR:E9PLP8
Ensembl:ENST00000524827 ArrayExpress:E9PLP8 Bgee:E9PLP8
Uniprot:E9PLP8
Length = 185
Score = 136 (52.9 bits), Expect = 6.4e-08, P = 6.4e-08
Identities = 34/132 (25%), Positives = 65/132 (49%)
Query: 27 EEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARL 86
E+ + E D D W+ L+ E +N P I+ Y+ +A+FP +W+ Y + + +
Sbjct: 54 EKKLEENPYDLDAWSILIREAQNQ-P--IDKARKTYERLVAQFPSSGRFWKLYIEAEIKA 110
Query: 87 CSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFED-PNDVRRL---FKRALSFVGKDY 142
+ DKV ++F+R + + +D+W Y S T P+ ++ + AL +G +
Sbjct: 111 KNYDKVEKLFQRCLMKVLH-IDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEI 169
Query: 143 LCHTMWDKYIEF 154
+ + +W YI F
Sbjct: 170 MSYQIWVDYINF 181
>TAIR|locus:2080853 [details] [associations]
symbol:AT3G51110 species:3702 "Arabidopsis thaliana"
[GO:0005622 "intracellular" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006396 "RNA processing" evidence=IEA;ISS]
InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF02184 PROSITE:PS50293 SMART:SM00386 EMBL:CP002686
GO:GO:0005622 GO:GO:0006396 Gene3D:1.25.40.10 IPI:IPI00546615
RefSeq:NP_566944.1 UniGene:At.857 ProteinModelPortal:F4J390
SMR:F4J390 EnsemblPlants:AT3G51110.1 GeneID:824275
KEGG:ath:AT3G51110 OMA:ERSHTIF Uniprot:F4J390
Length = 413
Score = 155 (59.6 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 66/294 (22%), Positives = 127/294 (43%)
Query: 76 WRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRAL 135
W KYA+ + R S++ V++RAV+ W+ Y + + + R++F+R +
Sbjct: 109 WLKYAEFEMRNKSVNHARNVWDRAVKILPRVDQFWYKYIHME-EILGNIDGARKIFERWM 167
Query: 136 SFVGKD--YLCHTMWD-KYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAG- 191
+ +LC ++ +Y E E S+ + + F +S LA
Sbjct: 168 DWSPDQQAWLCFIKFELRYNEIERSRSIYERFVLCHPKASSFIRYAKFEMKNSQVSLARI 227
Query: 192 AWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVI-KDLLDPSVDLVRSKAIQKYR 250
++ +E D E + V E K+ E + + K LD + R++ + K +
Sbjct: 228 VYERAIEMLKDVEEEAEMIFVAFAEFEELCKEVERARFLYKYALD-HIPKGRAEDLYK-K 285
Query: 251 FIG-EQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVV 309
F+ E+ Y +D+ I L PL+ +W DY+S E GD D +
Sbjct: 286 FVAFEKQYGNKEGIDDAIVGRRKLQYEGEVRKNPLN---YDSWFDYISLEETLGDKDRIR 342
Query: 310 KLYERCL--IPCADYPEFWMRYVD-FMESKGGREIASYALDRATQIFLKRLPVI 360
++YER + +P A+ +W RY+ +++ EI + ++R ++ + L +I
Sbjct: 343 EVYERAIANVPLAEEKRYWQRYIYLWIDYALFEEILAEDVERTRAVYRECLNLI 396
>ZFIN|ZDB-GENE-040426-694 [details] [associations]
symbol:crnkl1 "crooked neck pre-mRNA splicing
factor-like 1 (Drosophila)" species:7955 "Danio rerio" [GO:0005622
"intracellular" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF02184 PROSITE:PS50293 SMART:SM00386
ZFIN:ZDB-GENE-040426-694 GO:GO:0005622 GO:GO:0006396
Gene3D:1.25.40.10 GeneTree:ENSGT00550000074931 EMBL:CABZ01008082
EMBL:CABZ01008083 EMBL:CABZ01008084 IPI:IPI00932828
Ensembl:ENSDART00000112689 ArrayExpress:E7FGM7 Bgee:E7FGM7
Uniprot:E7FGM7
Length = 754
Score = 107 (42.7 bits), Expect = 0.00034, Sum P(3) = 0.00034
Identities = 35/143 (24%), Positives = 64/143 (44%)
Query: 76 WRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDV----RRLF 131
W Y + + R +DK ++E+A+ V W Y FE+ + R++F
Sbjct: 184 WHSYINFELRYKEVDKARSIYEKALVMVHPEVKNWIKYAH-----FEEKHGYVARGRKVF 238
Query: 132 KRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTL-RFP---SKKLHHYYDSFK 187
+RA+ F G++ + ++ + FE Q+ + + I+ L R P +++L Y F+
Sbjct: 239 ERAVEFFGEEQVSENLYVAFARFEEKQKEFERVRVIYKYALDRIPKQQAQELFKNYTVFE 298
Query: 188 KLAGAWKEELECESDSAMEFQSE 210
K G + +E S FQ E
Sbjct: 299 KRFGD-RRGIEDVIVSKRRFQYE 320
Score = 102 (41.0 bits), Expect = 3.0e-06, Sum P(3) = 3.0e-06
Identities = 25/113 (22%), Positives = 51/113 (45%)
Query: 76 WRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRAL 135
W KYA + L + + ++ERA+ ++ +W Y + M N R ++ RA+
Sbjct: 83 WIKYAQWEESLQEVQRSRSIYERALDVDHRNITLWLKYAEMEMKN-RQVNHARNIWDRAI 141
Query: 136 SFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRF-PSKKLHHYYDSFK 187
+ + + + W KY E + Q+F + + + P ++ H Y +F+
Sbjct: 142 TILPR---VNQFWYKYTYMEEMLGNIAGCRQVFERWMEWEPEEQAWHSYINFE 191
Score = 87 (35.7 bits), Expect = 3.0e-06, Sum P(3) = 3.0e-06
Identities = 38/181 (20%), Positives = 73/181 (40%)
Query: 292 WHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQ 351
WH Y++F + + D +YE+ L+ + W++Y F E G +RA +
Sbjct: 184 WHSYINFELRYKEVDKARSIYEKALVMVHPEVKNWIKYAHFEEKHGYVARGRKVFERAVE 243
Query: 352 IFLKRLPVIHLFNA--RYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFK--ANMERRLG 407
F + +L+ A R++E+ + R + + +D + + FK E+R G
Sbjct: 244 FFGEEQVSENLYVAFARFEEKQKEFERVRVIYKYA-LDRIPKQQAQELFKNYTVFEKRFG 302
Query: 408 NFVAACDTY--KEALETAAEQRKF-HTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHV 464
+ D K + E + H + + RL + AD R++ I ++
Sbjct: 303 DRRGIEDVIVSKRRFQYEEEVKANPHNYDAWF-DYLRLV-ESDADADTVREVYERAIANI 360
Query: 465 P 465
P
Sbjct: 361 P 361
Score = 61 (26.5 bits), Expect = 0.00034, Sum P(3) = 0.00034
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 292 WHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDF 332
W Y+ F +Q ++D LY+R L+ + + W+ Y F
Sbjct: 518 WKSYIDFEIEQEEYDNTRGLYKR-LLQRTQHVKVWISYAQF 557
Score = 53 (23.7 bits), Expect = 3.0e-06, Sum P(3) = 3.0e-06
Identities = 20/74 (27%), Positives = 36/74 (48%)
Query: 641 EADSSSQDRMQQVPPEAAEQHSQDACDPE-VLSLDLAHQV----TNENETVQASEAFSEE 695
E D + ++ QQVP Q S +A + E + A + +E+E+ +S + SE
Sbjct: 678 EEDENDKEE-QQVPEGKDAQESPEAEEQEPAAGGEQAEKEYDDRDDEDESSSSSSSDSES 736
Query: 696 DDVQREYEHESKKD 709
D+ Q++ +K D
Sbjct: 737 DEDQKDKTEHNKPD 750
>FB|FBgn0033859 [details] [associations]
symbol:CG6197 species:7227 "Drosophila melanogaster"
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] [GO:0005634 "nucleus" evidence=IC]
[GO:0006911 "phagocytosis, engulfment" evidence=IMP] [GO:0071011
"precatalytic spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:0071013 "catalytic step
2 spliceosome" evidence=IDA] InterPro:IPR003107 InterPro:IPR011990
SMART:SM00386 EMBL:AE013599 GO:GO:0006911 Gene3D:1.25.40.10
GO:GO:0071011 GO:GO:0000398 GO:GO:0071013 GO:GO:0000381
eggNOG:NOG289100 KO:K12867 OMA:PRSYKLW GeneTree:ENSGT00550000075140
EMBL:BT133178 RefSeq:NP_610891.1 UniGene:Dm.606 SMR:A1Z9G2
IntAct:A1Z9G2 STRING:A1Z9G2 EnsemblMetazoa:FBtr0087623 GeneID:36514
KEGG:dme:Dmel_CG6197 UCSC:CG6197-RA FlyBase:FBgn0033859
InParanoid:A1Z9G2 OrthoDB:EOG42FQZD GenomeRNAi:36514 NextBio:798953
Uniprot:A1Z9G2
Length = 883
Score = 84 (34.6 bits), Expect = 3.3e-06, Sum P(4) = 3.3e-06
Identities = 45/177 (25%), Positives = 75/177 (42%)
Query: 294 DYLSFAEKQGDFDWVVKLYER--CLIPCADYPEFWMRYVD-FMESKGGREIASYALDRAT 350
+Y F E+ F+ + YE+ L + + W Y+ F+E GG + L+RA
Sbjct: 522 NYGMFLEEHNYFEEAYRAYEKGISLFKWPNVYDIWNSYLTKFLERYGGTK-----LERAR 576
Query: 351 QIF---LKRLPVIH-----LFNARYKEQIGDTSAARAAFPE--SYIDSDSRF-IEKVTFK 399
+F L + P H L A+ +E+ G A + + S + D F + + K
Sbjct: 577 DLFEQCLDQCPPEHAKYFYLLYAKLEEEHGLARHAMSVYDRATSAVKEDEMFDMYNIFIK 636
Query: 400 ANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDI 456
E + + Y++A+E+ EQ H + V+F+ L T G D AR I
Sbjct: 637 KAAE--IYGLPRTREIYEKAIESLPEQNMRH----MCVKFAELE-TKLGEVDRARAI 686
Score = 75 (31.5 bits), Expect = 3.3e-06, Sum P(4) = 3.3e-06
Identities = 22/102 (21%), Positives = 49/102 (48%)
Query: 91 KVVEVFERAVQSATYSVDVW-FHYCSLSMSTFEDPN----DVRRLFKRA--LSFVGKDYL 143
+++ + AVQ+ V H + + F + N D R +F+R + +V + L
Sbjct: 372 EIISTYTEAVQTVQPKQAVGKLHTLWVEFAKFYEANGQVEDARVVFERGTEVEYVKVEDL 431
Query: 144 CHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDS 185
+W ++ E E+ QQ++ + ++ + P +K+ +Y D+
Sbjct: 432 A-AVWCEWAEMELRQQQFEAALKLMQRATAMPKRKIAYYDDT 472
Score = 71 (30.1 bits), Expect = 6.4e-05, Sum P(4) = 6.4e-05
Identities = 37/147 (25%), Positives = 54/147 (36%)
Query: 289 LKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDR 348
LK W Y E G F +YER + P+ + Y F+E E A A ++
Sbjct: 483 LKVWSMYADLEESFGTFKTCKAVYERIIDLKICTPQIIINYGMFLEEHNYFEEAYRAYEK 542
Query: 349 ATQIFLKRLPVIHLFNA---RYKEQIGDTSAARAA-FPESYIDSDSRFIEKVTFK--ANM 402
+F K V ++N+ ++ E+ G T RA E +D K + A +
Sbjct: 543 GISLF-KWPNVYDIWNSYLTKFLERYGGTKLERARDLFEQCLDQCPPEHAKYFYLLYAKL 601
Query: 403 ERRLGNFVAACDTYKEALETAAEQRKF 429
E G A Y A E F
Sbjct: 602 EEEHGLARHAMSVYDRATSAVKEDEMF 628
Score = 69 (29.3 bits), Expect = 0.00090, Sum P(3) = 0.00090
Identities = 39/186 (20%), Positives = 69/186 (37%)
Query: 8 LESLSAEPNSPVGFGKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLA 67
++SL+ E N V EE I + W L I++ + +VY+ L
Sbjct: 6 IKSLNLEINFEVE--DVPYEEEILRNAYSVKHW---LRYIDHKAKAPNNGVNMVYERALK 60
Query: 68 EFPLCYGYWRKYADHKARLCS--------IDKVVEVFERAVQSATYSVDVWFHYCSLSMS 119
E P Y W Y + + ++V FERA+ +W Y + S
Sbjct: 61 ELPGSYKIWHNYLRTRRKQVRGKIPTDPMYEEVNSAFERALVFMHKMPRIWMDYGAFMTS 120
Query: 120 TFEDPNDVRRLFKRALSFVGKDYLCH-TMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKK 178
+ R +F RAL + H +W Y++F + + +++ + L+ +
Sbjct: 121 QCKITR-TRHVFDRALRAL--PITQHGRIWPLYLQFVRRFEMPETALRVYRRYLKLFPED 177
Query: 179 LHHYYD 184
Y D
Sbjct: 178 TEEYVD 183
Score = 67 (28.6 bits), Expect = 3.3e-06, Sum P(4) = 3.3e-06
Identities = 34/128 (26%), Positives = 54/128 (42%)
Query: 606 SGDDATSLPSNQ-KSPLPENHDIRSDGAEVDIL-LSGEADSSSQDRMQQVP-PEAAEQHS 662
+G DA L + + E+ + A +I+ + GE ++D+ V P+ +
Sbjct: 759 AGPDAMRLLEEKARQAAAESKQKPIEKAASNIMFVRGETQGGAKDKKDTVVNPDEIDIGD 818
Query: 663 QDACDPEVLSLDLAHQVTNENETVQASEAFSEEDDVQREYEHESKKDLKPLSLEGLSLDP 722
D D E D +++TNEN+ A EE V ++ E K P + G SL P
Sbjct: 819 SDEDDEEEDD-DEENEMTNENQASAAVTKTDEEGLVMKKLRFEQKAI--PAKVFG-SLKP 874
Query: 723 GGN-DSPG 729
DS G
Sbjct: 875 SNQGDSDG 882
Score = 61 (26.5 bits), Expect = 3.3e-06, Sum P(4) = 3.3e-06
Identities = 18/82 (21%), Positives = 36/82 (43%)
Query: 27 EEFIAE-GSLDFDEWTSLLSEIENSCPDDIEMIGL--VYDSFLAEFPLCYGY-WRKYADH 82
E F+++ G + W L I + P + + + + L + G+ W AD+
Sbjct: 205 EHFVSKHGKSNHQLWNELCDLISKN-PHKVHSLNVDAIIRGGLRRYTDQLGHLWNSLADY 263
Query: 83 KARLCSIDKVVEVFERAVQSAT 104
R D+ +++E A+Q+ T
Sbjct: 264 YVRSGLFDRARDIYEEAIQTVT 285
>ZFIN|ZDB-GENE-040426-1997 [details] [associations]
symbol:cstf3 "cleavage stimulation factor, 3'
pre-RNA, subunit 3" species:7955 "Danio rerio" [GO:0006396 "RNA
processing" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR003107 InterPro:IPR008847
InterPro:IPR011990 Pfam:PF05843 SMART:SM00386
ZFIN:ZDB-GENE-040426-1997 GO:GO:0005634 GO:GO:0006397
Gene3D:1.25.40.10 CTD:1479 HOGENOM:HOG000231786 HOVERGEN:HBG053813
KO:K14408 EMBL:BC045871 IPI:IPI00497601 RefSeq:NP_998218.2
UniGene:Dr.104620 ProteinModelPortal:Q7ZVG5 SMR:Q7ZVG5
STRING:Q7ZVG5 PRIDE:Q7ZVG5 GeneID:406326 KEGG:dre:406326
InParanoid:Q7ZVG5 NextBio:20817950 ArrayExpress:Q7ZVG5 Bgee:Q7ZVG5
Uniprot:Q7ZVG5
Length = 716
Score = 136 (52.9 bits), Expect = 5.3e-06, Sum P(3) = 5.3e-06
Identities = 34/132 (25%), Positives = 65/132 (49%)
Query: 27 EEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARL 86
E+ + E D D W+ L+ E +N P I+ Y+ +A+FP +W+ Y + + +
Sbjct: 22 EKKLEENPYDLDAWSILIREAQNQ-P--IDKARKTYERLVAQFPSSGRFWKLYIEAEIKA 78
Query: 87 CSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFED-PNDVRRL---FKRALSFVGKDY 142
+ DKV ++F+R + + +D+W Y S T P+ ++ + AL +G +
Sbjct: 79 KNYDKVEKLFQRCLMKVLH-IDLWKCYLSYVRETKGKLPSYKEKMPQAYDFALDKIGMEI 137
Query: 143 LCHTMWDKYIEF 154
+ + +W YI F
Sbjct: 138 MSYQIWVDYINF 149
Score = 56 (24.8 bits), Expect = 5.3e-06, Sum P(3) = 5.3e-06
Identities = 19/86 (22%), Positives = 34/86 (39%)
Query: 283 PLDDIQLKNWHDYLSFAE----KQGDFDWVVK----LYERCLIPCADYPEFWMRYVDFME 334
P + Q++ W Y+ + + + D + K YE+CL+ +P+ W ++E
Sbjct: 243 PQEAQQVEMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLE 302
Query: 335 S-------KGGREIASYALDRATQIF 353
KG A D A I+
Sbjct: 303 QSSKLLAEKGDMNNAKLFSDEAANIY 328
Score = 47 (21.6 bits), Expect = 4.1e-05, Sum P(3) = 4.1e-05
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 310 KLYERCLIPCADYPEFWMRYVDFM 333
K++E L D PE+ + Y+D++
Sbjct: 431 KIFELGLKKYGDIPEYILAYIDYL 454
Score = 45 (20.9 bits), Expect = 5.3e-06, Sum P(3) = 5.3e-06
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 803 SSASHQNFIPEAHSHPQTPA 822
S A + + IPEA P TPA
Sbjct: 550 SRAKYASLIPEAVVAPSTPA 569
Score = 37 (18.1 bits), Expect = 0.00040, Sum P(3) = 0.00040
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 292 WHDYLSFAEKQGDFDWVVKLYER 314
W +L+F GD ++K+ R
Sbjct: 485 WARFLAFESNIGDLASILKVERR 507
>UNIPROTKB|E2R479 [details] [associations]
symbol:CSTF3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] InterPro:IPR003107
InterPro:IPR008847 Pfam:PF05843 SMART:SM00386 GO:GO:0005634
GO:GO:0006397 CTD:1479 KO:K14408 OMA:IAFRIFE
GeneTree:ENSGT00390000006758 EMBL:AAEX03011399 RefSeq:XP_533159.2
ProteinModelPortal:E2R479 Ensembl:ENSCAFT00000011665 GeneID:475948
KEGG:cfa:475948 NextBio:20851693 Uniprot:E2R479
Length = 717
Score = 136 (52.9 bits), Expect = 6.8e-06, Sum P(2) = 6.8e-06
Identities = 34/132 (25%), Positives = 65/132 (49%)
Query: 27 EEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARL 86
E+ + E D D W+ L+ E +N P I+ Y+ +A+FP +W+ Y + + +
Sbjct: 22 EKKLEENPYDLDAWSILIREAQNQ-P--IDKARKTYERLVAQFPSSGRFWKLYIEAEIKA 78
Query: 87 CSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFED-PNDVRRL---FKRALSFVGKDY 142
+ DKV ++F+R + + +D+W Y S T P+ ++ + AL +G +
Sbjct: 79 KNYDKVEKLFQRCLMKVLH-IDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEI 137
Query: 143 LCHTMWDKYIEF 154
+ + +W YI F
Sbjct: 138 MSYQIWVDYINF 149
Score = 56 (24.8 bits), Expect = 6.8e-06, Sum P(2) = 6.8e-06
Identities = 14/60 (23%), Positives = 25/60 (41%)
Query: 308 VVKLYERCLIPCADYPEFWMRYVDFMES-------KGGREIASYALDRATQIFLKRLPVI 360
V+ YE+CL+ +P+ W ++E KG A D A I+ + + +
Sbjct: 276 VMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL 335
Score = 50 (22.7 bits), Expect = 5.2e-05, Sum P(3) = 5.2e-05
Identities = 28/110 (25%), Positives = 44/110 (40%)
Query: 310 KLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKE 369
K++E L D PE+ + Y+D++ D T++ +R + + E
Sbjct: 431 KIFELGLKKYGDIPEYVLAYIDYLSHLNE--------DNNTRVLFER---VLTSGSLPPE 479
Query: 370 QIGDTSAARAAFPESYIDSDSRF-IEKVTFKANMERRLGNFVAAC-DTYK 417
+ G+ A AF + D S +EK F A E G A D YK
Sbjct: 480 KSGEIWARFLAFESNIGDLASILKVEKRRFTAFKEEYEGKETALLVDRYK 529
Score = 41 (19.5 bits), Expect = 5.2e-05, Sum P(3) = 5.2e-05
Identities = 28/128 (21%), Positives = 58/128 (45%)
Query: 147 MWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAME 206
MW KYI++E S + QTL +K++ Y+ + G ++ E+ +E
Sbjct: 251 MWKKYIQWEKSNPLRTE-----DQTLI--TKRVMFAYEQCLLVLGH-HPDIWYEAAQYLE 302
Query: 207 FQSELVLE-GEVP-AYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLD 264
S+L+ E G++ A DE +++ + + L++ + + + Y+E+
Sbjct: 303 QSSKLLAEKGDMNNAKLFSDEAANIYERAIST---LLKKNMLLYFAYAD---YEESRMKY 356
Query: 265 EKINCFEN 272
EK++ N
Sbjct: 357 EKVHSIYN 364
>UNIPROTKB|Q12996 [details] [associations]
symbol:CSTF3 "Cleavage stimulation factor subunit 3"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=TAS]
[GO:0006378 "mRNA polyadenylation" evidence=TAS] [GO:0006379 "mRNA
cleavage" evidence=TAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=TAS] [GO:0006397 "mRNA processing"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0031124 "mRNA 3'-end
processing" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
InterPro:IPR003107 InterPro:IPR008847 Pfam:PF05843 SMART:SM00386
GO:GO:0005654 EMBL:CH471064 Reactome:REACT_1675 GO:GO:0006378
GO:GO:0003723 GO:GO:0000398 Reactome:REACT_1788 GO:GO:0006379
GO:GO:0006369 Reactome:REACT_78 EMBL:U15782 EMBL:AK290836
EMBL:AC131263 EMBL:AL121926 EMBL:BC009792 EMBL:BC010533
EMBL:BC059948 EMBL:BC108319 EMBL:BM014288 IPI:IPI00015195
IPI:IPI00382661 IPI:IPI00651748 PIR:S50852 RefSeq:NP_001028677.1
RefSeq:NP_001028678.1 RefSeq:NP_001317.1 UniGene:Hs.44402
ProteinModelPortal:Q12996 SMR:Q12996 DIP:DIP-48674N IntAct:Q12996
STRING:Q12996 PhosphoSite:Q12996 DMDM:71153231 PaxDb:Q12996
PeptideAtlas:Q12996 PRIDE:Q12996 DNASU:1479 Ensembl:ENST00000323959
Ensembl:ENST00000431742 Ensembl:ENST00000438862 GeneID:1479
KEGG:hsa:1479 UCSC:uc001muh.3 CTD:1479 GeneCards:GC11M033106
H-InvDB:HIX0021822 HGNC:HGNC:2485 HPA:HPA039743 HPA:HPA040168
MIM:600367 neXtProt:NX_Q12996 PharmGKB:PA26987 eggNOG:COG5107
HOGENOM:HOG000231786 HOVERGEN:HBG053813 InParanoid:Q12996 KO:K14408
OMA:IAFRIFE OrthoDB:EOG47H5PF PhylomeDB:Q12996 GenomeRNAi:1479
NextBio:6077 PMAP-CutDB:Q12996 ArrayExpress:Q12996 Bgee:Q12996
CleanEx:HS_CSTF3 Genevestigator:Q12996 GermOnline:ENSG00000176102
Uniprot:Q12996
Length = 717
Score = 136 (52.9 bits), Expect = 6.8e-06, Sum P(2) = 6.8e-06
Identities = 34/132 (25%), Positives = 65/132 (49%)
Query: 27 EEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARL 86
E+ + E D D W+ L+ E +N P I+ Y+ +A+FP +W+ Y + + +
Sbjct: 22 EKKLEENPYDLDAWSILIREAQNQ-P--IDKARKTYERLVAQFPSSGRFWKLYIEAEIKA 78
Query: 87 CSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFED-PNDVRRL---FKRALSFVGKDY 142
+ DKV ++F+R + + +D+W Y S T P+ ++ + AL +G +
Sbjct: 79 KNYDKVEKLFQRCLMKVLH-IDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEI 137
Query: 143 LCHTMWDKYIEF 154
+ + +W YI F
Sbjct: 138 MSYQIWVDYINF 149
Score = 56 (24.8 bits), Expect = 6.8e-06, Sum P(2) = 6.8e-06
Identities = 14/60 (23%), Positives = 25/60 (41%)
Query: 308 VVKLYERCLIPCADYPEFWMRYVDFMES-------KGGREIASYALDRATQIFLKRLPVI 360
V+ YE+CL+ +P+ W ++E KG A D A I+ + + +
Sbjct: 276 VMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL 335
Score = 50 (22.7 bits), Expect = 5.2e-05, Sum P(3) = 5.2e-05
Identities = 28/110 (25%), Positives = 44/110 (40%)
Query: 310 KLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKE 369
K++E L D PE+ + Y+D++ D T++ +R + + E
Sbjct: 431 KIFELGLKKYGDIPEYVLAYIDYLSHLNE--------DNNTRVLFER---VLTSGSLPPE 479
Query: 370 QIGDTSAARAAFPESYIDSDSRF-IEKVTFKANMERRLGNFVAAC-DTYK 417
+ G+ A AF + D S +EK F A E G A D YK
Sbjct: 480 KSGEIWARFLAFESNIGDLASILKVEKRRFTAFKEEYEGKETALLVDRYK 529
Score = 41 (19.5 bits), Expect = 5.2e-05, Sum P(3) = 5.2e-05
Identities = 28/128 (21%), Positives = 58/128 (45%)
Query: 147 MWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAME 206
MW KYI++E S + QTL +K++ Y+ + G ++ E+ +E
Sbjct: 251 MWKKYIQWEKSNPLRTE-----DQTLI--TKRVMFAYEQCLLVLGH-HPDIWYEAAQYLE 302
Query: 207 FQSELVLE-GEVP-AYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLD 264
S+L+ E G++ A DE +++ + + L++ + + + Y+E+
Sbjct: 303 QSSKLLAEKGDMNNAKLFSDEAANIYERAIST---LLKKNMLLYFAYAD---YEESRMKY 356
Query: 265 EKINCFEN 272
EK++ N
Sbjct: 357 EKVHSIYN 364
>MGI|MGI:1351825 [details] [associations]
symbol:Cstf3 "cleavage stimulation factor, 3' pre-RNA,
subunit 3" species:10090 "Mus musculus" [GO:0003674
"molecular_function" evidence=ND] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR003107 InterPro:IPR008847 Pfam:PF05843
SMART:SM00386 MGI:MGI:1351825 GO:GO:0005634 GO:GO:0006397 CTD:1479
eggNOG:COG5107 HOGENOM:HOG000231786 HOVERGEN:HBG053813 KO:K14408
OMA:IAFRIFE OrthoDB:EOG47H5PF EMBL:BC003241 IPI:IPI00116929
RefSeq:NP_663504.1 UniGene:Mm.259876 UniGene:Mm.479443 PDB:2OND
PDB:2OOE PDBsum:2OND PDBsum:2OOE ProteinModelPortal:Q99LI7
SMR:Q99LI7 STRING:Q99LI7 PhosphoSite:Q99LI7 PaxDb:Q99LI7
PRIDE:Q99LI7 Ensembl:ENSMUST00000028599 GeneID:228410
KEGG:mmu:228410 GeneTree:ENSGT00390000006758 InParanoid:Q99LI7
ChiTaRS:CSTF3 EvolutionaryTrace:Q99LI7 NextBio:378988 Bgee:Q99LI7
Genevestigator:Q99LI7 GermOnline:ENSMUSG00000027176 Uniprot:Q99LI7
Length = 717
Score = 136 (52.9 bits), Expect = 6.8e-06, Sum P(2) = 6.8e-06
Identities = 34/132 (25%), Positives = 65/132 (49%)
Query: 27 EEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARL 86
E+ + E D D W+ L+ E +N P I+ Y+ +A+FP +W+ Y + + +
Sbjct: 22 EKKLEENPYDLDAWSILIREAQNQ-P--IDKARKTYERLVAQFPSSGRFWKLYIEAEIKA 78
Query: 87 CSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFED-PNDVRRL---FKRALSFVGKDY 142
+ DKV ++F+R + + +D+W Y S T P+ ++ + AL +G +
Sbjct: 79 KNYDKVEKLFQRCLMKVLH-IDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEI 137
Query: 143 LCHTMWDKYIEF 154
+ + +W YI F
Sbjct: 138 MSYQIWVDYINF 149
Score = 56 (24.8 bits), Expect = 6.8e-06, Sum P(2) = 6.8e-06
Identities = 14/60 (23%), Positives = 25/60 (41%)
Query: 308 VVKLYERCLIPCADYPEFWMRYVDFMES-------KGGREIASYALDRATQIFLKRLPVI 360
V+ YE+CL+ +P+ W ++E KG A D A I+ + + +
Sbjct: 276 VMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL 335
Score = 50 (22.7 bits), Expect = 5.2e-05, Sum P(3) = 5.2e-05
Identities = 28/110 (25%), Positives = 44/110 (40%)
Query: 310 KLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKE 369
K++E L D PE+ + Y+D++ D T++ +R + + E
Sbjct: 431 KIFELGLKKYGDIPEYVLAYIDYLSHLNE--------DNNTRVLFER---VLTSGSLPPE 479
Query: 370 QIGDTSAARAAFPESYIDSDSRF-IEKVTFKANMERRLGNFVAAC-DTYK 417
+ G+ A AF + D S +EK F A E G A D YK
Sbjct: 480 KSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEGKETALLVDRYK 529
Score = 41 (19.5 bits), Expect = 5.2e-05, Sum P(3) = 5.2e-05
Identities = 28/128 (21%), Positives = 58/128 (45%)
Query: 147 MWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAME 206
MW KYI++E S + QTL +K++ Y+ + G ++ E+ +E
Sbjct: 251 MWKKYIQWEKSNPLRTE-----DQTLI--TKRVMFAYEQCLLVLGH-HPDIWYEAAQYLE 302
Query: 207 FQSELVLE-GEVP-AYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLD 264
S+L+ E G++ A DE +++ + + L++ + + + Y+E+
Sbjct: 303 QSSKLLAEKGDMNNAKLFSDEAANIYERAIST---LLKKNMLLYFAYAD---YEESRMKY 356
Query: 265 EKINCFEN 272
EK++ N
Sbjct: 357 EKVHSIYN 364
>UNIPROTKB|Q5F4A0 [details] [associations]
symbol:CSTF3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0006397 "mRNA processing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR003107 InterPro:IPR008847
Pfam:PF05843 SMART:SM00386 GO:GO:0005634 GO:GO:0006397 CTD:1479
eggNOG:COG5107 HOGENOM:HOG000231786 HOVERGEN:HBG053813 KO:K14408
OMA:IAFRIFE OrthoDB:EOG47H5PF GeneTree:ENSGT00390000006758
EMBL:AADN02065603 EMBL:AJ851400 IPI:IPI00592390
RefSeq:NP_001012586.1 UniGene:Gga.22714 SMR:Q5F4A0 STRING:Q5F4A0
Ensembl:ENSGALT00000019104 GeneID:421595 KEGG:gga:421595
InParanoid:Q5F4A0 NextBio:20824338 Uniprot:Q5F4A0
Length = 718
Score = 136 (52.9 bits), Expect = 6.8e-06, Sum P(2) = 6.8e-06
Identities = 34/132 (25%), Positives = 65/132 (49%)
Query: 27 EEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARL 86
E+ + E D D W+ L+ E +N P I+ Y+ +A+FP +W+ Y + + +
Sbjct: 23 EKKLEENPYDLDAWSILIREAQNQ-P--IDKARKTYERLVAQFPSSGRFWKLYIEAEIKA 79
Query: 87 CSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFED-PNDVRRL---FKRALSFVGKDY 142
+ DKV ++F+R + + +D+W Y S T P+ ++ + AL +G +
Sbjct: 80 KNYDKVEKLFQRCLMKVLH-IDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEI 138
Query: 143 LCHTMWDKYIEF 154
+ + +W YI F
Sbjct: 139 MSYQIWVDYINF 150
Score = 56 (24.8 bits), Expect = 6.8e-06, Sum P(2) = 6.8e-06
Identities = 14/60 (23%), Positives = 25/60 (41%)
Query: 308 VVKLYERCLIPCADYPEFWMRYVDFMES-------KGGREIASYALDRATQIFLKRLPVI 360
V+ YE+CL+ +P+ W ++E KG A D A I+ + + +
Sbjct: 277 VMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL 336
Score = 50 (22.7 bits), Expect = 5.2e-05, Sum P(3) = 5.2e-05
Identities = 28/110 (25%), Positives = 44/110 (40%)
Query: 310 KLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKE 369
K++E L D PE+ + Y+D++ D T++ +R + + E
Sbjct: 432 KIFELGLKKYGDIPEYVLAYIDYLSHLNE--------DNNTRVLFER---VLTSGSLPPE 480
Query: 370 QIGDTSAARAAFPESYIDSDSRF-IEKVTFKANMERRLGNFVAAC-DTYK 417
+ G+ A AF + D S +EK F A E G A D YK
Sbjct: 481 KSGEIWARFLAFESNIGDLASILKVEKRRFTAFKEEYEGKETALLVDRYK 530
Score = 41 (19.5 bits), Expect = 5.2e-05, Sum P(3) = 5.2e-05
Identities = 28/128 (21%), Positives = 58/128 (45%)
Query: 147 MWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAME 206
MW KYI++E S + QTL +K++ Y+ + G ++ E+ +E
Sbjct: 252 MWKKYIQWEKSNPLRTE-----DQTLI--TKRVMFAYEQCLLVLGH-HPDIWYEAAQYLE 303
Query: 207 FQSELVLE-GEVP-AYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLD 264
S+L+ E G++ A DE +++ + + L++ + + + Y+E+
Sbjct: 304 QSSKLLAEKGDMNNAKLFSDEAANIYERAIST---LLKKNMLLYFAYAD---YEESRMKY 357
Query: 265 EKINCFEN 272
EK++ N
Sbjct: 358 EKVHSIYN 365
Score = 38 (18.4 bits), Expect = 0.00079, Sum P(3) = 0.00079
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 292 WHDYLSFAEKQGDFDWVVKLYER 314
W +L+F GD ++K+ +R
Sbjct: 486 WARFLAFESNIGDLASILKVEKR 508
>UNIPROTKB|F1MZT2 [details] [associations]
symbol:CRNKL1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000245 "spliceosomal
complex assembly" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF02184 PROSITE:PS50293
SMART:SM00386 GO:GO:0003723 Gene3D:1.25.40.10 GO:GO:0071013
GO:GO:0000245 OMA:KFTFAKI GeneTree:ENSGT00550000074931
EMBL:DAAA02035750 IPI:IPI01017666 Ensembl:ENSBTAT00000011148
Uniprot:F1MZT2
Length = 781
Score = 103 (41.3 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 26/113 (23%), Positives = 51/113 (45%)
Query: 76 WRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRAL 135
W KYA + L I + ++ERA+ ++ +W Y + M N R ++ RA+
Sbjct: 168 WIKYAQWEESLKEIQRARSIYERALDVDYRNITLWLKYAEMEMKN-RQVNHARNIWDRAI 226
Query: 136 SFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRF-PSKKLHHYYDSFK 187
+ + + + W KY E + Q+F + + + P ++ H Y +F+
Sbjct: 227 TTLPR---VNQFWYKYTYMEEMLGNIAGARQVFERWMEWRPEEQAWHSYINFE 276
Score = 86 (35.3 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 53/219 (24%), Positives = 83/219 (37%)
Query: 278 YFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADY---PEFWMRYVDFME 334
Y H L +KNW Y F EK G F K+YER + D ++ + F E
Sbjct: 292 YIHSLVLVHPDVKNWIKYARFEEKHGYFAHARKVYERAVEFFGDEHMDEHLYVAFAKFEE 351
Query: 335 SKGG----REIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDS 390
++ R I YALDR ++ + L + ++++ GD E I S
Sbjct: 352 NQKEFERVRVIYKYALDRISKQEAQELFKNYTI---FEKKFGDRRGI-----EDIIVSKR 403
Query: 391 RFIEKVTFKANMER--------RLGNFVAACDTYKEALETAAE-----QRKFHTLPLLYV 437
RF + KAN RL A +T +E E A Q K H +Y+
Sbjct: 404 RFQYEEEVKANPHNYDAWFDYLRLVESDAEAETVREVYERAIANVPPVQEKRHWKRYIYL 463
Query: 438 QFSRLTYTTTGSAD--NARDILIDGIKHVPNCKLLLEEL 474
+ Y + D R + ++ +P+ K ++
Sbjct: 464 WINYALYEELEAKDPERTRQVYQASLELIPHKKFTFAKM 502
Score = 77 (32.2 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 29/124 (23%), Positives = 54/124 (43%)
Query: 292 WHDYLSFAEKQGDFDWVVKLYERCLIPCA-DYPEF--WMRYVDFMESKGGREIASYALDR 348
WH Y++F + + D +YER + +P+ W++Y F E G A +R
Sbjct: 269 WHSYINFELRYKEVDRARTIYERYIHSLVLVHPDVKNWIKYARFEEKHGYFAHARKVYER 328
Query: 349 ATQIFLKRLPVIHLFNA--RYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFK--ANMER 404
A + F HL+ A +++E + R + + +D S+ + FK E+
Sbjct: 329 AVEFFGDEHMDEHLYVAFAKFEENQKEFERVRVIYKYA-LDRISKQEAQELFKNYTIFEK 387
Query: 405 RLGN 408
+ G+
Sbjct: 388 KFGD 391
>UNIPROTKB|J9P5Z1 [details] [associations]
symbol:CRNKL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF02184 PROSITE:PS50293
SMART:SM00386 GO:GO:0005622 GO:GO:0006396 Gene3D:1.25.40.10
GeneTree:ENSGT00550000074931 EMBL:AAEX03013754
Ensembl:ENSCAFT00000047479 Uniprot:J9P5Z1
Length = 728
Score = 103 (41.3 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 26/113 (23%), Positives = 51/113 (45%)
Query: 76 WRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRAL 135
W KYA + L I + ++ERA+ ++ +W Y + M N R ++ RA+
Sbjct: 125 WIKYAQWEESLKEIQRARSIYERALDVDYRNITLWLKYAEMEMKN-RQVNHARNIWDRAI 183
Query: 136 SFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRF-PSKKLHHYYDSFK 187
+ + + + W KY E + Q+F + + + P ++ H Y +F+
Sbjct: 184 TTLPR---VNQFWYKYTYMEEMLGNIAGARQVFERWMEWQPEEQAWHSYINFE 233
Score = 85 (35.0 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 29/121 (23%), Positives = 53/121 (43%)
Query: 292 WHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQ 351
WH Y++F + + D +YER ++ D W++Y F E G A +RA +
Sbjct: 226 WHSYINFELRYKEVDRARTIYERFVLVHPDVKN-WIKYARFEEKHGYFAHARKVYERAVE 284
Query: 352 IFLKRLPVIHLFNA--RYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFK--ANMERRLG 407
F HL+ A +++E + R + + +D S+ + FK E++ G
Sbjct: 285 FFGDEHMDEHLYVAFAKFEENQKEFERVRVIYKYA-LDRISKQEAQELFKNYTIFEKKFG 343
Query: 408 N 408
+
Sbjct: 344 D 344
Score = 79 (32.9 bits), Expect = 9.7e-05, Sum P(2) = 9.7e-05
Identities = 50/208 (24%), Positives = 80/208 (38%)
Query: 289 LKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADY---PEFWMRYVDFMESKGG----REI 341
+KNW Y F EK G F K+YER + D ++ + F E++ R I
Sbjct: 256 VKNWIKYARFEEKHGYFAHARKVYERAVEFFGDEHMDEHLYVAFAKFEENQKEFERVRVI 315
Query: 342 ASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKAN 401
YALDR ++ + L + ++++ GD E I S RF + KAN
Sbjct: 316 YKYALDRISKQEAQELFKNYTI---FEKKFGDRRGI-----EDIIVSKRRFQYEEEVKAN 367
Query: 402 MER--------RLGNFVAACDTYKEALETAAE-----QRKFHTLPLLYVQFSRLTYTTTG 448
RL A +T +E E A Q K H +Y+ + Y
Sbjct: 368 PHNYDAWFDYLRLVESDAEAETVREVYERAIANVPPIQEKRHWKRYIYLWVNYALYEELE 427
Query: 449 SAD--NARDILIDGIKHVPNCKLLLEEL 474
+ D R + ++ +P+ K ++
Sbjct: 428 AKDPERTRQVYQASLELIPHKKFTFAKM 455
>UNIPROTKB|E1BGY7 [details] [associations]
symbol:CSTF3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] InterPro:IPR003107 InterPro:IPR008847
InterPro:IPR011990 Pfam:PF05843 SMART:SM00386 GO:GO:0005634
GO:GO:0006397 Gene3D:1.25.40.10 OMA:IAFRIFE
GeneTree:ENSGT00390000006758 EMBL:DAAA02041256 EMBL:DAAA02041257
IPI:IPI00709818 Ensembl:ENSBTAT00000011369 Uniprot:E1BGY7
Length = 718
Score = 136 (52.9 bits), Expect = 2.6e-05, Sum P(3) = 2.6e-05
Identities = 34/132 (25%), Positives = 65/132 (49%)
Query: 27 EEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARL 86
E+ + E D D W+ L+ E +N P I+ Y+ +A+FP +W+ Y + + +
Sbjct: 22 EKKLEENPYDLDAWSILIREAQNQ-P--IDKARKTYERLVAQFPSSGRFWKLYIEAEIKA 78
Query: 87 CSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFED-PNDVRRL---FKRALSFVGKDY 142
+ DKV ++F+R + + +D+W Y S T P+ ++ + AL +G +
Sbjct: 79 KNYDKVEKLFQRCLMKVLH-IDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEI 137
Query: 143 LCHTMWDKYIEF 154
+ + +W YI F
Sbjct: 138 MSYQIWVDYINF 149
Score = 54 (24.1 bits), Expect = 2.6e-05, Sum P(3) = 2.6e-05
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 308 VVKLYERCLIPCADYPEFWMRYVDFME 334
V+ YE+CL+ +P+ W ++E
Sbjct: 276 VMFAYEQCLLVLGHHPDIWYEAAQYLE 302
Score = 50 (22.7 bits), Expect = 6.5e-05, Sum P(3) = 6.5e-05
Identities = 28/110 (25%), Positives = 44/110 (40%)
Query: 310 KLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKE 369
K++E L D PE+ + Y+D++ D T++ +R + + E
Sbjct: 432 KIFELGLKKYGDIPEYVLAYIDYLSHLNE--------DNNTRVLFER---VLTSGSLPPE 480
Query: 370 QIGDTSAARAAFPESYIDSDSRF-IEKVTFKANMERRLGNFVAAC-DTYK 417
+ G+ A AF + D S +EK F A E G A D YK
Sbjct: 481 KSGEIWARFLAFESNIGDLASILKVEKRRFTAFKEEYEGKETALLVDRYK 530
Score = 40 (19.1 bits), Expect = 2.6e-05, Sum P(3) = 2.6e-05
Identities = 7/11 (63%), Positives = 9/11 (81%)
Query: 147 MWDKYIEFEIS 157
MW KYI++E S
Sbjct: 251 MWKKYIQWEKS 261
>TAIR|locus:2007973 [details] [associations]
symbol:CSTF77 species:3702 "Arabidopsis thaliana"
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IEA] [GO:0006397 "mRNA processing" evidence=ISS]
[GO:0003729 "mRNA binding" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0031123 "RNA 3'-end processing"
evidence=IMP] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IMP] [GO:0000278 "mitotic cell cycle"
evidence=RCA] [GO:0006396 "RNA processing" evidence=RCA]
[GO:0009630 "gravitropism" evidence=RCA] InterPro:IPR003107
InterPro:IPR008847 InterPro:IPR011990 InterPro:IPR013026
InterPro:IPR019734 Pfam:PF05843 PROSITE:PS50005 PROSITE:PS50293
SMART:SM00386 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
GO:GO:0045892 GO:GO:0003729 GO:GO:0006397 Gene3D:1.25.40.10
eggNOG:COG5107 KO:K14408 GO:GO:0031123 UniGene:At.27878
UniGene:At.28561 EMBL:BT002320 IPI:IPI00548656 RefSeq:NP_173218.2
SMR:Q8GUP1 IntAct:Q8GUP1 STRING:Q8GUP1 EnsemblPlants:AT1G17760.1
GeneID:838354 KEGG:ath:AT1G17760 TAIR:At1g17760
HOGENOM:HOG000030800 InParanoid:Q8GUP1 OMA:FEQTYGD
ProtClustDB:CLSN2690404 Genevestigator:Q8GUP1 Uniprot:Q8GUP1
Length = 734
Score = 136 (52.9 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 89/505 (17%), Positives = 195/505 (38%)
Query: 61 VYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMST 120
+Y+ L+ +P +W++Y + + + + D ++F R + + V +W Y
Sbjct: 28 IYEQLLSLYPTSARFWKQYVEAQMAVNNDDATKQIFSRCLLTCL-QVPLWQCYIRFIRKV 86
Query: 121 F-----EDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEF-------EISQQ--RWSSLAQ 166
+ E + + F+ L+++G D +W +YI F +++ R ++L +
Sbjct: 87 YDKKGAEGQEETTKAFEFMLNYIGTDIASGPIWTEYIAFLKSLPALNLNEDLHRKTALRK 146
Query: 167 IFVQTLRFPSKKLHHYYDSFKKLAGAWKEELE--CESDSAMEFQSELVLEGEVPAYYKDD 224
++ + + P+ + + ++ +L ++ +F S + E Y ++
Sbjct: 147 VYHRAILTPTHHVEQLWKDYENFENTVNRQLAKGLVNEYQPKFNSARAVYRERKKYIEEI 206
Query: 225 ETSSVIKDLLDPSVDLVRSKAIQKYRFIGE---QIYKEASQLDEKINCFENLIRRPYFHV 281
+ + + S + + A +K+ + Q AS I +E + Y +
Sbjct: 207 DWNMLAVPPTGTSKEETQWVAWKKFLSFEKGNPQRIDTASSTKRIIYAYEQCLMCLYHY- 265
Query: 282 KPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREI 341
P D+ W+DY + K G D +K+++R L D + + ES+G +
Sbjct: 266 -P--DV----WYDYAEWHVKSGSTDAAIKVFQRALKAIPDSEMLKYAFAEMEESRGAIQS 318
Query: 342 ASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKAN 401
A + L H+ R+ + AAR F ++ + + F A
Sbjct: 319 AKKLYENILGASTNSLA--HIQYLRFLRRAEGVEAARKYFLDARKSPSCTYHVYIAF-AT 375
Query: 402 MERRLGNFV-AACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDG 460
M + A + ++E L+ + + L Y F T N R +
Sbjct: 376 MAFCIDKEPKVAHNIFEEGLKLYMSEPVYI---LKYADF----LTRLNDDRNIRALFERA 428
Query: 461 IKHVP--NCKLLLEELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISS 518
+ +P + + + I+F +G + I V+ + AL + + ++D+ S
Sbjct: 429 LSTLPVEDSAEVWKRFIQFEQTYGDLASILKVEQRMKEALSGKGEEGSSPPESSLQDVVS 488
Query: 519 LYLQFLDL--CGTIHDIRNAWNQHI 541
Y ++DL C T +D+ + Q +
Sbjct: 489 RY-SYMDLWPC-TSNDLDHLARQEL 511
>WB|WBGene00006307 [details] [associations]
symbol:suf-1 species:6239 "Caenorhabditis elegans"
[GO:0005622 "intracellular" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] InterPro:IPR003107
InterPro:IPR008847 Pfam:PF05843 SMART:SM00386 GO:GO:0005634
GO:GO:0009792 GO:GO:0006397 GO:GO:0000003 KO:K14408 OMA:IAFRIFE
GeneTree:ENSGT00390000006758 EMBL:Z68315 PIR:T21484
RefSeq:NP_495825.1 ProteinModelPortal:Q19866 SMR:Q19866
STRING:Q19866 EnsemblMetazoa:F28C6.6.1 EnsemblMetazoa:F28C6.6.2
GeneID:174380 KEGG:cel:CELE_F28C6.6 UCSC:F28C6.6.1 CTD:174380
WormBase:F28C6.6 InParanoid:Q19866 NextBio:883790
ArrayExpress:Q19866 Uniprot:Q19866
Length = 735
Score = 139 (54.0 bits), Expect = 9.4e-05, Sum P(2) = 9.4e-05
Identities = 46/180 (25%), Positives = 78/180 (43%)
Query: 20 GFGKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKY 79
G + E I D D W LL E S P D E Y+S + +FP YW+ Y
Sbjct: 3 GLSMRNPERRIETNPFDVDAWNLLLRE-HQSRPIDQERD--FYESLVKQFPNSGRYWKAY 59
Query: 80 ADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSF-- 137
+H+ R + + V ++F R + S ++D+W Y T + R +A F
Sbjct: 60 IEHELRSKNFENVEKLFSRCLVSVL-NIDLWKCYIHYVFETKGQRDQYREEMAKAYDFAL 118
Query: 138 --VGKDYLCHTMWDKYIEF-----EISQ----QRWSSLAQIFVQTLRFPSKKLHHYYDSF 186
VG D ++++ +YI F + Q QR +++ +I+ + L P L ++ +
Sbjct: 119 EKVGMDVQAYSIFTEYIAFLKKVPAVGQYAENQRITAVRKIYQKALATPMHNLELIWNDY 178
Score = 42 (19.8 bits), Expect = 9.4e-05, Sum P(2) = 9.4e-05
Identities = 8/32 (25%), Positives = 18/32 (56%)
Query: 304 DFDWVVKLYERCLIPCADYPEFWMRYVDFMES 335
D + +++++ L + PEF + Y DF+ +
Sbjct: 413 DKEVAIRVFKLGLKKYENEPEFGLAYADFLSN 444
Score = 41 (19.5 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 295 YLSFAEKQGDFDWVVKLYERCL 316
Y F E+ F+ V +Y+R L
Sbjct: 334 YADFQEEHKQFEAVKNIYDRLL 355
Score = 40 (19.1 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 286 DIQLKNWHDYLSFAEKQGDFDWVVKLYER 314
D ++ W +L F GD ++K+ +R
Sbjct: 467 DKSIRIWDRFLDFESCVGDLASILKVEKR 495
Score = 37 (18.1 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 830 EQQNPDRVHRDLRFGYRG 847
E QN RV +DL+ RG
Sbjct: 200 EYQNARRVEKDLQQMTRG 217
>TAIR|locus:2161363 [details] [associations]
symbol:AT5G45990 species:3702 "Arabidopsis thaliana"
[GO:0005622 "intracellular" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM;IEA] [GO:0006396 "RNA processing" evidence=IEA;ISS]
[GO:0006397 "mRNA processing" evidence=IEA] InterPro:IPR003107
InterPro:IPR008847 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF02184 Pfam:PF05843 PROSITE:PS50293 SMART:SM00386
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006397
Gene3D:1.25.40.10 EMBL:AB006698 eggNOG:NOG327505
HOGENOM:HOG000207972 IPI:IPI00521045 RefSeq:NP_199411.1
UniGene:At.55396 ProteinModelPortal:Q9FNM3 SMR:Q9FNM3 PaxDb:Q9FNM3
PRIDE:Q9FNM3 EnsemblPlants:AT5G45990.1 GeneID:834639
KEGG:ath:AT5G45990 TAIR:At5g45990 InParanoid:Q9FNM3 OMA:SAFIRYA
PhylomeDB:Q9FNM3 ProtClustDB:CLSN2684756 Genevestigator:Q9FNM3
Uniprot:Q9FNM3
Length = 673
Score = 91 (37.1 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 22/64 (34%), Positives = 34/64 (53%)
Query: 96 FERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFE 155
FE ++ A +++ VW Y S D R +++RAL G +Y HT+W KY EFE
Sbjct: 67 FEDQIRRARWNIQVWVKYAKWEESQM-DYARARSVWERALE--G-EYRNHTLWVKYAEFE 122
Query: 156 ISQQ 159
+ +
Sbjct: 123 MKNK 126
Score = 90 (36.7 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 62/291 (21%), Positives = 117/291 (40%)
Query: 295 YLSFAEKQG-DFDWVVKLYERCLIPCADYPEFWMRYVDFMESKG-------GREIASYAL 346
Y F K+G ++YER + A+ E + +V F E + R I +AL
Sbjct: 218 YAKFEMKRGGQVKLAREVYERAVDKLANDEEAEILFVSFAEFEERCKEVERARFIYKFAL 277
Query: 347 D-----RATQIFLKRLPVIHLFNARY--KEQIGDTSAARAAFP-ESYIDSDSRFIEKVTF 398
D RA +++ K + F +Y KE I D + F E + + +
Sbjct: 278 DHIRKGRAEELYKKFVA----FEKQYGDKEGIEDAIVGKKRFEYEDEVSKNPLNYDSWFD 333
Query: 399 KANMERRLGNFVAACDTYKEALET---AAEQRKFHTLPLLYVQFSRLTYTTTGSADNARD 455
+E +GN + Y+ A+ A E+R + L++ ++ T + RD
Sbjct: 334 YVRLEESVGNKDRIREIYERAIANVPPAQEKRFWQRYIYLWINYALYEEIETKDVERTRD 393
Query: 456 ILIDGIKHVPNCKLLLEELIKFTMVHGGRSHISIVDA--VISNALYSRPDVLKVFSLEDV 513
+ + +K +P+ K ++ + R +++ A ++ NA+ P V K+F + +
Sbjct: 394 VYRECLKLIPHTKFSFAKIWLLAAEYEIRQ-LNLTGARQILGNAIGKAPKV-KIFK-KYI 450
Query: 514 EDISSLYLQFLDLCGTIHDIRNAWNQHIKLFPHTVRTAYECPGRETKSLRA 564
E L L +D C +++ W+ + +E ET+ RA
Sbjct: 451 E--MELKLVNIDRCRKLYERFLEWSPE-NCYAWRNYAEFEISLAETERARA 498
Score = 84 (34.6 bits), Expect = 0.00058, Sum P(2) = 0.00058
Identities = 24/104 (23%), Positives = 47/104 (45%)
Query: 76 WRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRAL 135
W KYA + + V+ERA++ + +W Y M + N+ R ++ R++
Sbjct: 81 WVKYAKWEESQMDYARARSVWERALEGEYRNHTLWVKYAEFEMKN-KFVNNARNVWDRSV 139
Query: 136 SFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRF-PSKK 178
+ + + +W+KYI E + QIF + + + P +K
Sbjct: 140 TLLPR---VDQLWEKYIYMEEKLGNVTGARQIFERWMNWSPDQK 180
>UNIPROTKB|F1PYE9 [details] [associations]
symbol:CRNKL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF02184 PROSITE:PS50293
SMART:SM00386 GO:GO:0005622 GO:GO:0006396 Gene3D:1.25.40.10
OMA:KFTFAKI GeneTree:ENSGT00550000074931 EMBL:AAEX03013754
Ensembl:ENSCAFT00000008599 Uniprot:F1PYE9
Length = 797
Score = 103 (41.3 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 26/113 (23%), Positives = 51/113 (45%)
Query: 76 WRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRAL 135
W KYA + L I + ++ERA+ ++ +W Y + M N R ++ RA+
Sbjct: 189 WIKYAQWEESLKEIQRARSIYERALDVDYRNITLWLKYAEMEMKN-RQVNHARNIWDRAI 247
Query: 136 SFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRF-PSKKLHHYYDSFK 187
+ + + + W KY E + Q+F + + + P ++ H Y +F+
Sbjct: 248 TTLPR---VNQFWYKYTYMEEMLGNIAGARQVFERWMEWQPEEQAWHSYINFE 297
Score = 79 (32.9 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 50/208 (24%), Positives = 80/208 (38%)
Query: 289 LKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADY---PEFWMRYVDFMESKGG----REI 341
+KNW Y F EK G F K+YER + D ++ + F E++ R I
Sbjct: 325 VKNWIKYARFEEKHGYFAHARKVYERAVEFFGDEHMDEHLYVAFAKFEENQKEFERVRVI 384
Query: 342 ASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKAN 401
YALDR ++ + L + ++++ GD E I S RF + KAN
Sbjct: 385 YKYALDRISKQEAQELFKNYTI---FEKKFGDRRGI-----EDIIVSKRRFQYEEEVKAN 436
Query: 402 MER--------RLGNFVAACDTYKEALETAAE-----QRKFHTLPLLYVQFSRLTYTTTG 448
RL A +T +E E A Q K H +Y+ + Y
Sbjct: 437 PHNYDAWFDYLRLVESDAEAETVREVYERAIANVPPIQEKRHWKRYIYLWVNYALYEELE 496
Query: 449 SAD--NARDILIDGIKHVPNCKLLLEEL 474
+ D R + ++ +P+ K ++
Sbjct: 497 AKDPERTRQVYQASLELIPHKKFTFAKM 524
>DICTYBASE|DDB_G0295719 [details] [associations]
symbol:DDB_G0295719 "unknown" species:44689
"Dictyostelium discoideum" [GO:0008150 "biological_process"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
dictyBase:DDB_G0295719 EMBL:AAFI02000070 KO:K10867
RefSeq:XP_002649141.1 EnsemblProtists:DDB0252814 GeneID:8624735
KEGG:ddi:DDB_G0295719 OMA:ILITSEF Uniprot:C7G031
Length = 616
Score = 130 (50.8 bits), Expect = 0.00012, P = 0.00012
Identities = 54/232 (23%), Positives = 91/232 (39%)
Query: 579 QPFESEHLMPSASQDKKFSPPEKSDSESGDDATSLPSNQKSPLPE--NHDIRSDGAEVDI 636
QP ES P+ S PP ++S + +AT +P+ E N + + ++
Sbjct: 261 QPAESNEA-PAQSSSTVEQPP--AESSAAPEATEVPAESAEQPTESSNAEQQQTDSQQPT 317
Query: 637 LLSGEADSSSQDRMQQVPPEAAEQHSQDACDPEVLSLDLAHQVTNENETVQASEAFSEED 696
SGE D QQ P ++Q + D+ + Q + E + ++S A D
Sbjct: 318 QSSGEEQQQPTDSQQQ--PTDSQQQTTDSQQQQTSESSNPTQSSGEQQPTESSNAEQPTD 375
Query: 697 DVQREYEHESKKDLKPLSLEGLSLDPGGNDSPGSLCATS-HECEAPQKTNFSHESMLKSE 755
Q E S + + P + S T ++ + ++ +S E
Sbjct: 376 SQQPPAESSSAPEATESPEQSGEEQPTESQQETSASPTEENQTSSTEEQQQPADSTASVE 435
Query: 756 APRETSLSDG-SVLGASQNNNGSHFAPSSMGTQASSSAPIQTRTVSPSSSAS 806
P ETS S S A N + + SS T++SS+ P ++ T SSA+
Sbjct: 436 QPAETSSSQQTSEAPAQSNEQPTESSASSNPTESSSATPTESSTAPTESSAT 487
>UNIPROTKB|Q5JY65 [details] [associations]
symbol:CRNKL1 "Crooked neck-like protein 1" species:9606
"Homo sapiens" [GO:0005622 "intracellular" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF02184 PROSITE:PS50293
SMART:SM00386 GO:GO:0005622 GO:GO:0006396 Gene3D:1.25.40.10
HOGENOM:HOG000207972 EMBL:AL035454 IPI:IPI00219317
UniGene:Hs.171342 HGNC:HGNC:15762 HOVERGEN:HBG051046
OrthoDB:EOG4SJ5DC SMR:Q5JY65 IntAct:Q5JY65 Ensembl:ENST00000377327
Uniprot:Q5JY65
Length = 836
Score = 103 (41.3 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 26/113 (23%), Positives = 51/113 (45%)
Query: 76 WRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRAL 135
W KYA + L I + ++ERA+ ++ +W Y + M N R ++ RA+
Sbjct: 233 WIKYAQWEESLKEIQRARSIYERALDVDYRNITLWLKYAEMEMKN-RQVNHARNIWDRAI 291
Query: 136 SFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRF-PSKKLHHYYDSFK 187
+ + + + W KY E + Q+F + + + P ++ H Y +F+
Sbjct: 292 TTLPR---VNQFWYKYTYMEEMLGNVAGARQVFERWMEWQPEEQAWHSYINFE 341
Score = 79 (32.9 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 28/121 (23%), Positives = 52/121 (42%)
Query: 292 WHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQ 351
WH Y++F + + D +YER ++ D W++Y F E A +RA +
Sbjct: 334 WHSYINFELRYKEVDRARTIYERFVLVHPDVKN-WIKYARFEEKHAYFAHARKVYERAVE 392
Query: 352 IFLKRLPVIHLFNA--RYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFK--ANMERRLG 407
F HL+ A +++E + R + + +D S+ + FK E++ G
Sbjct: 393 FFGDEHMDEHLYVAFAKFEENQKEFERVRVIYKYA-LDRISKQDAQELFKNYTIFEKKFG 451
Query: 408 N 408
+
Sbjct: 452 D 452
Score = 76 (31.8 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 58/267 (21%), Positives = 103/267 (38%)
Query: 289 LKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADY---PEFWMRYVDFMESKGG----REI 341
+KNW Y F EK F K+YER + D ++ + F E++ R I
Sbjct: 364 VKNWIKYARFEEKHAYFAHARKVYERAVEFFGDEHMDEHLYVAFAKFEENQKEFERVRVI 423
Query: 342 ASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKAN 401
YALDR ++ + L + ++++ GD E I S RF + KAN
Sbjct: 424 YKYALDRISKQDAQELFKNYTI---FEKKFGDRRGI-----EDIIVSKRRFQYEEEVKAN 475
Query: 402 MER--------RLGNFVAACDTYKEALETAAE-----QRKFHTLPLLYVQFSRLTYTTTG 448
RL A + +E E A Q K H +Y+ + Y
Sbjct: 476 PHNYDAWFDYLRLVESDAEAEAVREVYERAIANVPPIQEKRHWKRYIYLWINYALYEELE 535
Query: 449 SAD--NARDILIDGIKHVPNCKLLLEEL-IKFTMVHGGRSHISIVDAVISNALYSRPDVL 505
+ D R + ++ +P+ K ++ I + + ++S+ + ++ P
Sbjct: 536 AKDPERTRQVYQASLELIPHKKFTFAKMWILYAQFEIRQKNLSLARRALGTSIGKCPKN- 594
Query: 506 KVFSLEDVEDISSLYLQFLDLCGTIHD 532
K+F + +E L L+ D C +++
Sbjct: 595 KLFKVY-IE--LELQLREFDRCRKLYE 618
>MGI|MGI:1914127 [details] [associations]
symbol:Crnkl1 "Crn, crooked neck-like 1 (Drosophila)"
species:10090 "Mus musculus" [GO:0000245 "spliceosomal complex
assembly" evidence=ISO] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003723 "RNA binding" evidence=ISO]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=ISO]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF02184 SMART:SM00386 MGI:MGI:1914127 GO:GO:0016607
GO:GO:0005681 GO:GO:0003723 Gene3D:1.25.40.10 GO:GO:0000245
eggNOG:NOG327505 KO:K12869 HOGENOM:HOG000207972 OMA:KFTFAKI
GeneTree:ENSGT00550000074931 CTD:51340 HOVERGEN:HBG051046
EMBL:AK004749 EMBL:AK012962 EMBL:AK088882 EMBL:BC029187
IPI:IPI00132376 RefSeq:NP_080096.1 UniGene:Mm.248755
ProteinModelPortal:P63154 SMR:P63154 STRING:P63154
PhosphoSite:P63154 PaxDb:P63154 PRIDE:P63154
Ensembl:ENSMUST00000001818 GeneID:66877 KEGG:mmu:66877
InParanoid:P63154 OrthoDB:EOG4SJ5DC ChiTaRS:CRNKL1 NextBio:322905
Bgee:P63154 CleanEx:MM_CRNKL1 Genevestigator:P63154
GermOnline:ENSMUSG00000001767 Uniprot:P63154
Length = 690
Score = 103 (41.3 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 26/113 (23%), Positives = 51/113 (45%)
Query: 76 WRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRAL 135
W KYA + L I + ++ERA+ ++ +W Y + M N R ++ RA+
Sbjct: 84 WIKYAQWEESLKEIQRARSIYERALDVDYRNITLWLKYAEMEMKN-RQVNHARNIWDRAI 142
Query: 136 SFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRF-PSKKLHHYYDSFK 187
+ + + + W KY E + Q+F + + + P ++ H Y +F+
Sbjct: 143 TTLPR---VNQFWYKYTYMEEMLGNVAGARQVFERWMEWQPEEQAWHSYINFE 192
Score = 77 (32.2 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 50/208 (24%), Positives = 79/208 (37%)
Query: 289 LKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADY---PEFWMRYVDFMESKGG----REI 341
+KNW Y F EK F K+YER + D ++ + F E++ R I
Sbjct: 215 VKNWIKYARFEEKHAYFAHARKVYERAVEFFGDEHMDEHLYVAFAKFEENQKEFERVRVI 274
Query: 342 ASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKAN 401
YALDR ++ + L + ++++ GD E I S RF + KAN
Sbjct: 275 YKYALDRISKQEAQELFKNYTI---FEKKFGDRRGI-----EDIIVSKRRFQYEEEVKAN 326
Query: 402 MER--------RLGNFVAACDTYKEALETAAE-----QRKFHTLPLLYVQFSRLTYTTTG 448
RL A DT +E E A Q K H +Y+ + Y
Sbjct: 327 PHNYDAWFDYLRLVESDAEADTVREVYERAIANVPPIQEKRHWKRYIYLWVNYALYEELE 386
Query: 449 SAD--NARDILIDGIKHVPNCKLLLEEL 474
+ D R + ++ +P+ K ++
Sbjct: 387 AKDPERTRQVYQASLELIPHKKFTFAKM 414
Score = 69 (29.3 bits), Expect = 0.00089, Sum P(2) = 0.00089
Identities = 38/181 (20%), Positives = 71/181 (39%)
Query: 292 WHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQ 351
WH Y++F + + + +YER ++ W++Y F E A +RA +
Sbjct: 185 WHSYINFELRYKEVERARTIYERFVLVHPAVKN-WIKYARFEEKHAYFAHARKVYERAVE 243
Query: 352 IFLKRLPVIHLFNA--RYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFK--ANMERRLG 407
F HL+ A +++E + R + + +D S+ + FK E++ G
Sbjct: 244 FFGDEHMDEHLYVAFAKFEENQKEFERVRVIYKYA-LDRISKQEAQELFKNYTIFEKKFG 302
Query: 408 NFVAACDTY--KEALETAAEQRKF-HTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHV 464
+ D K + E + H + + RL + AD R++ I +V
Sbjct: 303 DRRGIEDIIVSKRRFQYEEEVKANPHNYDAWF-DYLRLV-ESDAEADTVREVYERAIANV 360
Query: 465 P 465
P
Sbjct: 361 P 361
>RGD|620507 [details] [associations]
symbol:Crnkl1 "crooked neck pre-mRNA splicing factor-like 1
(Drosophila)" species:10116 "Rattus norvegicus" [GO:0000245
"spliceosomal complex assembly" evidence=ISO;ISS] [GO:0003723 "RNA
binding" evidence=ISO;ISS] [GO:0005681 "spliceosomal complex"
evidence=ISO;ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA;ISO] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF02184 SMART:SM00386 RGD:620507
GO:GO:0005681 GO:GO:0003723 Gene3D:1.25.40.10 GO:GO:0071013
GO:GO:0000245 eggNOG:NOG327505 KO:K12869 HOGENOM:HOG000207972
GeneTree:ENSGT00550000074931 CTD:51340 HOVERGEN:HBG051046
OrthoDB:EOG4SJ5DC EMBL:AF245018 EMBL:BC085718 IPI:IPI00327482
RefSeq:NP_446249.1 RefSeq:XP_003749628.1 UniGene:Rn.162694
ProteinModelPortal:P63155 SMR:P63155 STRING:P63155 PRIDE:P63155
Ensembl:ENSRNOT00000014632 GeneID:100910202 GeneID:116481
KEGG:rno:100910202 KEGG:rno:116481 UCSC:RGD:620507
InParanoid:P63155 NextBio:619051 Genevestigator:P63155
GermOnline:ENSRNOG00000040045 Uniprot:P63155
Length = 690
Score = 103 (41.3 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 26/113 (23%), Positives = 51/113 (45%)
Query: 76 WRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRAL 135
W KYA + L I + ++ERA+ ++ +W Y + M N R ++ RA+
Sbjct: 84 WIKYAQWEESLKEIQRARSIYERALDVDYRNITLWLKYAEMEMKN-RQVNHARNIWDRAI 142
Query: 136 SFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRF-PSKKLHHYYDSFK 187
+ + + + W KY E + Q+F + + + P ++ H Y +F+
Sbjct: 143 TTLPR---VNQFWYKYTYMEEMLGNVAGARQVFERWMEWQPEEQAWHSYINFE 192
Score = 77 (32.2 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 50/208 (24%), Positives = 79/208 (37%)
Query: 289 LKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADY---PEFWMRYVDFMESKGG----REI 341
+KNW Y F EK F K+YER + D ++ + F E++ R I
Sbjct: 215 VKNWIKYARFEEKHAYFAHARKVYERAVEFFGDEHMDEHLYVAFAKFEENQKEFERVRVI 274
Query: 342 ASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKAN 401
YALDR ++ + L + ++++ GD E I S RF + KAN
Sbjct: 275 YKYALDRISKQEAQELFKNYTI---FEKKFGDRRGI-----EDIIVSKRRFQYEEEVKAN 326
Query: 402 MER--------RLGNFVAACDTYKEALETAAE-----QRKFHTLPLLYVQFSRLTYTTTG 448
RL A DT +E E A Q K H +Y+ + Y
Sbjct: 327 PHNYDAWFDYLRLVESDAEADTVREVYERAIANVPPIQEKRHWKRYIYLWVNYALYEELE 386
Query: 449 SAD--NARDILIDGIKHVPNCKLLLEEL 474
+ D R + ++ +P+ K ++
Sbjct: 387 AKDPERTRQVYQASLELIPHKKFTFAKM 414
Score = 69 (29.3 bits), Expect = 0.00089, Sum P(2) = 0.00089
Identities = 38/181 (20%), Positives = 71/181 (39%)
Query: 292 WHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQ 351
WH Y++F + + + +YER ++ W++Y F E A +RA +
Sbjct: 185 WHSYINFELRYKEVERARTIYERFVLVHPAVKN-WIKYARFEEKHAYFAHARKVYERAVE 243
Query: 352 IFLKRLPVIHLFNA--RYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFK--ANMERRLG 407
F HL+ A +++E + R + + +D S+ + FK E++ G
Sbjct: 244 FFGDEHMDEHLYVAFAKFEENQKEFERVRVIYKYA-LDRISKQEAQELFKNYTIFEKKFG 302
Query: 408 NFVAACDTY--KEALETAAEQRKF-HTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHV 464
+ D K + E + H + + RL + AD R++ I +V
Sbjct: 303 DRRGIEDIIVSKRRFQYEEEVKANPHNYDAWF-DYLRLV-ESDAEADTVREVYERAIANV 360
Query: 465 P 465
P
Sbjct: 361 P 361
>DICTYBASE|DDB_G0277977 [details] [associations]
symbol:xab2 "TPR-like helical domain-containing
protein" species:44689 "Dictyostelium discoideum" [GO:0006396 "RNA
processing" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0006974 "response to
DNA damage stimulus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR003107 InterPro:IPR011990
SMART:SM00386 dictyBase:DDB_G0277977 GO:GO:0005634 GO:GO:0008380
GenomeReviews:CM000152_GR EMBL:AAFI02000023 GO:GO:0006281
GO:GO:0006397 GO:GO:0006351 Gene3D:1.25.40.10 RefSeq:XP_642044.1
ProteinModelPortal:Q54Z08 STRING:Q54Z08 EnsemblProtists:DDB0233461
GeneID:8621256 KEGG:ddi:DDB_G0277977 eggNOG:NOG289100 KO:K12867
OMA:PRSYKLW ProtClustDB:CLSZ2729105 Uniprot:Q54Z08
Length = 850
Score = 102 (41.0 bits), Expect = 0.00014, Sum P(3) = 0.00014
Identities = 39/179 (21%), Positives = 74/179 (41%)
Query: 27 EEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARL 86
EE +++ + W L E + P + +Y+ + E P Y W +Y +
Sbjct: 35 EEDVSKNPYSVNCWLRYL-EFKQGSPQ--KQRNYIYERAIRELPRSYKIWHQYLLERTLA 91
Query: 87 ----C----SIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFV 138
C S + V +FER++ +W YC M E R+ F RAL +
Sbjct: 92 IRGKCILENSFEAVNTLFERSLVFLDKMPRIWIEYCEFLMIQ-EKITLTRKTFDRAL--I 148
Query: 139 GKDYLCH-TMWDKYIEFEISQQRWS-SLAQIFVQTLRFPSKKLHHYYDSFKKLAGAWKE 195
H +W++Y +F + + S + +++ + L+ +K+ Y + K+ W+E
Sbjct: 149 ALPVTQHYRIWNEYTKFILKRSIPSLTCIRVYKRYLKIQPEKVEEYIEYLIKIK-EWQE 206
Score = 64 (27.6 bits), Expect = 0.00014, Sum P(3) = 0.00014
Identities = 39/197 (19%), Positives = 79/197 (40%)
Query: 289 LKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDR 348
+K W Y+ E G F +YE+ + P+ + + ++E E A +
Sbjct: 497 IKIWTFYVDLEESFGTFHNTKSIYEKMIQLKVVTPQIILNFAKYLEENKYFEDMFKAYEH 556
Query: 349 ATQIFL----KRLPVIHL--FNARYKEQIGDTSAARAAFPE--SYIDSDSRFIEKVTFKA 400
Q+FL + + + +L F RY R F + S + I + + A
Sbjct: 557 GVQLFLFPHVQDIWITYLTKFIQRYAGM--KLERTRDLFEQVLSKVPPKESIIFYLMY-A 613
Query: 401 NMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDG 460
N E + G + Y A ++ ++ +F + LLY+ + + + R+I
Sbjct: 614 NFEEQYGLARHSMAVYDRAAKSVDKEDRFK-MYLLYIHRASEFF----GVNQTREIFSKA 668
Query: 461 IKHVPNCKLLLEELIKF 477
I+ +P+ + + + +KF
Sbjct: 669 IEQLPD-QYVRDMCLKF 684
Score = 61 (26.5 bits), Expect = 0.00014, Sum P(3) = 0.00014
Identities = 16/75 (21%), Positives = 37/75 (49%)
Query: 643 DSSSQDRMQQVPPEAAEQHSQDACDPEVLSLDLAHQVT-NENETVQASEAFSEEDDVQRE 701
D + Q + QQ E +Q Q + +L + VT + ET+Q ++ +D++ +
Sbjct: 768 DKNQQQKQQQQQQEKQQQQQQQ--QQQASTLTKSKPVTVSLPETIQYNKKIENDDEINLD 825
Query: 702 YEHESKKDLKPLSLE 716
+ E +++ L+++
Sbjct: 826 DDEEEEEEEDQLAIK 840
>UNIPROTKB|Q9BZJ0 [details] [associations]
symbol:CRNKL1 "Crooked neck-like protein 1" species:9606
"Homo sapiens" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] [GO:0000245 "spliceosomal complex
assembly" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IC] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF02184 SMART:SM00386
EMBL:AF318303 GO:GO:0005737 GO:GO:0016607 GO:GO:0003723
Gene3D:1.25.40.10 GO:GO:0071013 GO:GO:0000245 eggNOG:NOG327505
KO:K12869 OMA:KFTFAKI EMBL:AF255443 EMBL:AF318302 EMBL:AF318304
EMBL:AF318305 EMBL:AF111802 EMBL:AK023246 EMBL:AK023728
EMBL:AK292799 EMBL:AL035454 EMBL:AK022908 IPI:IPI00177437
IPI:IPI00219317 IPI:IPI00219318 IPI:IPI00219320 IPI:IPI01011870
RefSeq:NP_057736.4 UniGene:Hs.171342 ProteinModelPortal:Q9BZJ0
SMR:Q9BZJ0 IntAct:Q9BZJ0 STRING:Q9BZJ0 PhosphoSite:Q9BZJ0
DMDM:147744555 PaxDb:Q9BZJ0 PRIDE:Q9BZJ0 DNASU:51340
Ensembl:ENST00000377340 Ensembl:ENST00000490910
Ensembl:ENST00000496549 Ensembl:ENST00000536226 GeneID:51340
KEGG:hsa:51340 UCSC:uc002wrs.3 CTD:51340 GeneCards:GC20M019963
H-InvDB:HIX0015678 HGNC:HGNC:15762 MIM:610952 neXtProt:NX_Q9BZJ0
PharmGKB:PA26886 HOVERGEN:HBG051046 InParanoid:Q9BZJ0
GenomeRNAi:51340 NextBio:54782 ArrayExpress:Q9BZJ0 Bgee:Q9BZJ0
Genevestigator:Q9BZJ0 GermOnline:ENSG00000101343 Uniprot:Q9BZJ0
Length = 848
Score = 103 (41.3 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 26/113 (23%), Positives = 51/113 (45%)
Query: 76 WRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRAL 135
W KYA + L I + ++ERA+ ++ +W Y + M N R ++ RA+
Sbjct: 245 WIKYAQWEESLKEIQRARSIYERALDVDYRNITLWLKYAEMEMKN-RQVNHARNIWDRAI 303
Query: 136 SFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRF-PSKKLHHYYDSFK 187
+ + + + W KY E + Q+F + + + P ++ H Y +F+
Sbjct: 304 TTLPR---VNQFWYKYTYMEEMLGNVAGARQVFERWMEWQPEEQAWHSYINFE 353
Score = 79 (32.9 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 28/121 (23%), Positives = 52/121 (42%)
Query: 292 WHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQ 351
WH Y++F + + D +YER ++ D W++Y F E A +RA +
Sbjct: 346 WHSYINFELRYKEVDRARTIYERFVLVHPDVKN-WIKYARFEEKHAYFAHARKVYERAVE 404
Query: 352 IFLKRLPVIHLFNA--RYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFK--ANMERRLG 407
F HL+ A +++E + R + + +D S+ + FK E++ G
Sbjct: 405 FFGDEHMDEHLYVAFAKFEENQKEFERVRVIYKYA-LDRISKQDAQELFKNYTIFEKKFG 463
Query: 408 N 408
+
Sbjct: 464 D 464
Score = 76 (31.8 bits), Expect = 0.00028, Sum P(2) = 0.00028
Identities = 58/267 (21%), Positives = 103/267 (38%)
Query: 289 LKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADY---PEFWMRYVDFMESKGG----REI 341
+KNW Y F EK F K+YER + D ++ + F E++ R I
Sbjct: 376 VKNWIKYARFEEKHAYFAHARKVYERAVEFFGDEHMDEHLYVAFAKFEENQKEFERVRVI 435
Query: 342 ASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKAN 401
YALDR ++ + L + ++++ GD E I S RF + KAN
Sbjct: 436 YKYALDRISKQDAQELFKNYTI---FEKKFGDRRGI-----EDIIVSKRRFQYEEEVKAN 487
Query: 402 MER--------RLGNFVAACDTYKEALETAAE-----QRKFHTLPLLYVQFSRLTYTTTG 448
RL A + +E E A Q K H +Y+ + Y
Sbjct: 488 PHNYDAWFDYLRLVESDAEAEAVREVYERAIANVPPIQEKRHWKRYIYLWINYALYEELE 547
Query: 449 SAD--NARDILIDGIKHVPNCKLLLEEL-IKFTMVHGGRSHISIVDAVISNALYSRPDVL 505
+ D R + ++ +P+ K ++ I + + ++S+ + ++ P
Sbjct: 548 AKDPERTRQVYQASLELIPHKKFTFAKMWILYAQFEIRQKNLSLARRALGTSIGKCPKN- 606
Query: 506 KVFSLEDVEDISSLYLQFLDLCGTIHD 532
K+F + +E L L+ D C +++
Sbjct: 607 KLFKVY-IE--LELQLREFDRCRKLYE 630
>SGD|S000001800 [details] [associations]
symbol:SRP40 "Nucleolar serine-rich protein" species:4932
"Saccharomyces cerevisiae" [GO:0003674 "molecular_function"
evidence=ND] [GO:0006913 "nucleocytoplasmic transport"
evidence=ISS] [GO:0005730 "nucleolus" evidence=IDA] SGD:S000001800
Pfam:PF05022 GO:GO:0005730 GO:GO:0006913 EMBL:BK006944 EMBL:X73541
GeneTree:ENSGT00700000104548 eggNOG:NOG318801 InterPro:IPR007718
RefSeq:NP_013018.3 GeneID:853967 KEGG:sce:YKR092C KO:K02927
RefSeq:NP_013020.3 GeneID:853969 KEGG:sce:YKR094C EMBL:L11275
EMBL:Z28317 PIR:S38170 ProteinModelPortal:P32583 DIP:DIP-2115N
IntAct:P32583 MINT:MINT-472548 STRING:P32583 PaxDb:P32583
EnsemblFungi:YKR092C CYGD:YKR092c OMA:DAXESAR OrthoDB:EOG4M68TB
NextBio:975404 Genevestigator:P32583 GermOnline:YKR092C
Uniprot:P32583
Length = 406
Score = 126 (49.4 bits), Expect = 0.00018, P = 0.00018
Identities = 59/247 (23%), Positives = 105/247 (42%)
Query: 587 MPSASQDKKFSPPEKSDSESGDDATSLPSNQKSPLPENHDIRSDGAEVDILLSGEADSS- 645
+P S +K EKS S S ++S S+ S + S + S +DSS
Sbjct: 11 VPKLSVKEK-EIEEKSSSSSSSSSSSSSSSSSSSSSSSSSGESSSSSSSSSSSSSSDSSD 69
Query: 646 SQDRMQQVPPEAAEQHSQDACDPEVLS-LDLAHQVTNENETVQASEAFSE---EDDVQ-- 699
S D ++ S + D E S D + ++ + + + E+ SE ED+ +
Sbjct: 70 SSDSESSSSSSSSSSSSSSSSDSESSSESDSSSSGSSSSSSSSSDESSSESESEDETKKR 129
Query: 700 -REYEHESKKDLKPLSLEGLSLDPGGNDSPGSLCATSHECEAPQKTNFSHESMLKSEAPR 758
RE ++E K+ K E S + S GS ++S E E+ +++ S S +
Sbjct: 130 ARESDNEDAKETKKAKTEPESSSSSESSSSGS--SSSSESESGSESDSDSSSSSSSSSDS 187
Query: 759 ET-SLSDGSVLGASQNNNGSHFAPSSMGTQASSSAPIQTRTVSPSSSASHQNFIPEAHSH 817
E+ S SD +S +++ S + SS +S S + + S S S S + ++ S
Sbjct: 188 ESDSESDSQSSSSSSSSDSSSDSDSSSSDSSSDSDSSSSSSSSSSDSDSDSDSSSDSDSS 247
Query: 818 PQTPANS 824
+ ++S
Sbjct: 248 GSSDSSS 254
>UNIPROTKB|E1BWJ0 [details] [associations]
symbol:SART3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003107 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00386
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005622
GO:GO:0006396 GeneTree:ENSGT00550000074656 OMA:SQAVMKM
EMBL:AADN02034959 EMBL:AADN02034960 EMBL:AADN02034961
EMBL:AADN02034962 EMBL:AADN02034963 IPI:IPI00823214
ProteinModelPortal:E1BWJ0 Ensembl:ENSGALT00000038892
ArrayExpress:E1BWJ0 Uniprot:E1BWJ0
Length = 731
Score = 101 (40.6 bits), Expect = 0.00021, Sum P(3) = 0.00021
Identities = 44/176 (25%), Positives = 80/176 (45%)
Query: 1 MEVQISNLESLSAEP--NSPVGFGKQGLEEFIAEGSLDFDEWTSLLSEIENSCPD----- 53
ME + E S +P + + K+ L++ E ++E LLS++ P
Sbjct: 221 MEASYAEYEEWSEDPIPETTIKNYKKALQQL--EKCKPYEEALDLLSQLGAETPKLAEYQ 278
Query: 54 ---DIEM-------IGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVV-EVFERAVQS 102
D EM I L+Y+ LAE L W +Y + R + ++V +RAV++
Sbjct: 279 AYIDFEMKAGDPARIQLIYERALAENCLVPDLWARYNQYLDRQLKVKELVLSAHDRAVRN 338
Query: 103 ATYSVDVWFHYCSLSMSTFE-DPNDVRRLFKRALS--FV-GKDYLCHTMWDKYIEF 154
++V +W Y L+M D + +F++AL+ F+ DY+ +W Y+++
Sbjct: 339 CPWTVGLWIQYL-LAMERHGVDHCIISDMFEKALNAGFIQATDYV--EIWQAYLDY 391
Score = 73 (30.8 bits), Expect = 0.00021, Sum P(3) = 0.00021
Identities = 23/83 (27%), Positives = 41/83 (49%)
Query: 246 IQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDF 305
+Q R++G+Q AS D +I ++ F++ + +L + Y+ F K GD
Sbjct: 427 LQTCRYLGQQ----ASHGDLEIGGAAEVVGACSFYLLGAETPKLAEYQAYIDFEMKAGDP 482
Query: 306 DWVVKLYERCL---IPC-ADYPE 324
+ +YE+ L + C +DYPE
Sbjct: 483 ARIQLIYEKALHRAVQCTSDYPE 505
Score = 49 (22.3 bits), Expect = 0.00021, Sum P(3) = 0.00021
Identities = 14/58 (24%), Positives = 26/58 (44%)
Query: 656 EAAEQHSQDACDPEVLSLDLAHQVTNENETVQASEAF---SEEDDVQREYEHESKKDL 710
E AEQ Q + + +++ + + E EE+D R+ EH+SK ++
Sbjct: 580 EKAEQRKQSRAEKKASKKAKKNRIGEKRKADDDDEGEWGQEEEEDPLRQREHDSKDNI 637
>FB|FBgn0000377 [details] [associations]
symbol:crn "crooked neck" species:7227 "Drosophila
melanogaster" [GO:0007443 "Malpighian tubule morphogenesis"
evidence=IMP] [GO:0007417 "central nervous system development"
evidence=NAS] [GO:0005634 "nucleus" evidence=IC;NAS] [GO:0007422
"peripheral nervous system development" evidence=NAS] [GO:0048663
"neuron fate commitment" evidence=NAS] [GO:0007405 "neuroblast
proliferation" evidence=NAS] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;ISS] [GO:0016607 "nuclear speck" evidence=IDA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] [GO:0007438 "oenocyte development"
evidence=IMP] [GO:0008347 "glial cell migration" evidence=IMP]
[GO:0008366 "axon ensheathment" evidence=IMP] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0071011
"precatalytic spliceosome" evidence=IDA] [GO:0051298 "centrosome
duplication" evidence=IMP] [GO:0005813 "centrosome" evidence=IDA]
[GO:0072686 "mitotic spindle" evidence=IDA] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF02184 SMART:SM00386 GO:GO:0005813
GO:GO:0051298 GO:GO:0016607 EMBL:AE014298 GO:GO:0007438
Gene3D:1.25.40.10 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
GO:GO:0008347 GO:GO:0072686 GO:GO:0007443 GO:GO:0000381
GO:GO:0008366 eggNOG:NOG327505 KO:K12869 OMA:KFTFAKI
GeneTree:ENSGT00550000074931 EMBL:X58374 EMBL:AL009195
EMBL:AY051666 PIR:T13427 RefSeq:NP_477118.1 UniGene:Dm.3140
ProteinModelPortal:P17886 SMR:P17886 DIP:DIP-17429N IntAct:P17886
MINT:MINT-282072 STRING:P17886 PaxDb:P17886
EnsemblMetazoa:FBtr0070418 GeneID:31208 KEGG:dme:Dmel_CG3193
CTD:12935 FlyBase:FBgn0000377 HOGENOM:HOG000264173
InParanoid:P17886 OrthoDB:EOG4J9KDW PhylomeDB:P17886
GenomeRNAi:31208 NextBio:772455 Bgee:P17886 GermOnline:CG3193
Uniprot:P17886
Length = 702
Score = 128 (50.1 bits), Expect = 0.00024, P = 0.00024
Identities = 59/298 (19%), Positives = 124/298 (41%)
Query: 76 WRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRAL 135
W KYA+ + + ++ +++RAV W+ Y + E+ R++F+R +
Sbjct: 113 WLKYAEMEMKNKQVNHARNLWDRAVTIMPRVNQFWYKYTYME-EMLENVAGARQVFERWM 171
Query: 136 SFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRF-PSKKLHHYYDSFKKLAG--- 191
+ ++ W Y+ FE+ + +I+ + + P K + F++ G
Sbjct: 172 EWQPEEQA----WQTYVNFELRYKEIDRAREIYERFVYVHPDVKNWIKFARFEESHGFIH 227
Query: 192 ----AWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQ 247
++ +E D +E + + + D + K LD + R++ +
Sbjct: 228 GSRRVFERAVEFFGDDYIEERLFIAFARFEEGQKEHDRARIIYKYALD-HLPKDRTQELF 286
Query: 248 KYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPL--DDIQLKNWHDYLSFAEKQGDF 305
K E+ Y + + +++ I + +R Y + + + + W DYL E +GD
Sbjct: 287 KAYTKHEKKYGDRAGIEDVI-----VSKRKYQYEQEVAANPTNYDAWFDYLRLIEAEGDR 341
Query: 306 DWVVKLYERCL--IPCADYPEFWMRYVDFMESKG-GREIASYALDRATQIFLKRLPVI 360
D + + YER + +P A+ FW RY+ + E+ + +R QI+ L +I
Sbjct: 342 DQIRETYERAISNVPPANEKNFWRRYIYLWINYALYEELEAEDAERTRQIYKTCLELI 399
>TAIR|locus:2152965 [details] [associations]
symbol:AT5G41770 species:3702 "Arabidopsis thaliana"
[GO:0005622 "intracellular" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006396 "RNA processing" evidence=IEA;ISS]
InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF02184 PROSITE:PS50293 SMART:SM00386 EMBL:CP002688
GO:GO:0005622 GO:GO:0006396 Gene3D:1.25.40.10 KO:K12869 OMA:KFTFAKI
IPI:IPI00530971 RefSeq:NP_198992.2 UniGene:At.9341
ProteinModelPortal:F4JZX8 SMR:F4JZX8 PRIDE:F4JZX8
EnsemblPlants:AT5G41770.1 GeneID:834182 KEGG:ath:AT5G41770
Uniprot:F4JZX8
Length = 705
Score = 94 (38.1 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 23/73 (31%), Positives = 39/73 (53%)
Query: 96 FERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFE 155
FE ++ A +++ VW Y S +D R +++RA+ G DY HT+W KY EFE
Sbjct: 81 FEDQIRRARWNIQVWVKYAQWEESQ-KDYARARSVWERAIE--G-DYRNHTLWLKYAEFE 136
Query: 156 ISQQRWSSLAQIF 168
+ + +S ++
Sbjct: 137 MKNKFVNSARNVW 149
Score = 84 (34.6 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 59/265 (22%), Positives = 106/265 (40%)
Query: 295 YLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKG-------GREIASYALD 347
Y F K G+ +YER AD E + +V F E + R I +ALD
Sbjct: 232 YAKFEMKGGEVARCRSVYERATEKLADDEEAEILFVAFAEFEERCKEVERARFIYKFALD 291
Query: 348 -----RATQIFLKRLPVIHLFNARY--KEQIGDTSAARAAFP-ESYI-DSDSRFIEKVTF 398
RA ++ K + F +Y KE I D + F E + S S + +
Sbjct: 292 HIPKGRAEDLYRKFVA----FEKQYGDKEGIEDAIVGKRRFQYEDEVRKSPSNYDSWFDY 347
Query: 399 KANMERRLGNFVAACDTYKEALET---AAEQRKFHTLPLLYVQFSRLTYTTTGSADNARD 455
+E +GN + Y+ A+ A E+R + L++ ++ T + RD
Sbjct: 348 -VRLEESVGNKDRIREIYERAIANVPPAEEKRYWQRYIYLWINYALFEEIETEDIERTRD 406
Query: 456 ILIDGIKHVPNCKLLLEELIKFTMVHGGRSHISIVDA--VISNALYSRPDVLKVFSLEDV 513
+ + +K +P+ K ++ R +++ A ++ NA+ P K+F + +
Sbjct: 407 VYRECLKLIPHSKFSFAKIWLLAAQFEIRQ-LNLTGARQILGNAIGKAPKD-KIFK-KYI 463
Query: 514 EDISSLYLQFLDLCGTIHDIRNAWN 538
E L L +D C +++ W+
Sbjct: 464 E--IELQLGNMDRCRKLYERYLEWS 486
>UNIPROTKB|F1NF69 [details] [associations]
symbol:SART3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003107 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00386
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005622
GO:GO:0006396 GeneTree:ENSGT00550000074656 EMBL:AADN02034959
EMBL:AADN02034960 EMBL:AADN02034961 EMBL:AADN02034962
EMBL:AADN02034963 IPI:IPI00577406 Ensembl:ENSGALT00000007806
ArrayExpress:F1NF69 Uniprot:F1NF69
Length = 772
Score = 106 (42.4 bits), Expect = 0.00030, Sum P(3) = 0.00030
Identities = 38/139 (27%), Positives = 62/139 (44%)
Query: 69 FPLCYGYWRKYADHKARLCSI----DKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDP 124
FPL W + + ++ S +KV E+FERAV+ ++W Y S+
Sbjct: 16 FPLTEEIWLDWLKDEIKMASEVSEREKVYELFERAVKDYICP-EIWLEYAQYSIGGIGQE 74
Query: 125 ND---VRRLFKRALSFVGKDYLCHT-MWDKYIEFEISQQRWSSLAQI---FVQTLRFPSK 177
VR +F+RAL+ VG T +W+ Y EFE + + L +I F + L P
Sbjct: 75 GGIEKVRSIFERALTAVGLHVTKGTALWEAYREFENAILETAQLERIHTLFRRQLGIPLL 134
Query: 178 KLHHYYDSFKKLAGAWKEE 196
+ Y +++ W E+
Sbjct: 135 DMEASYAEYEE----WSED 149
Score = 69 (29.3 bits), Expect = 0.00030, Sum P(3) = 0.00030
Identities = 23/91 (25%), Positives = 39/91 (42%)
Query: 292 WHDYLSFAEKQG-DFDWVVKLYERCL----IPCADYPEFWMRYVDFMESKGG-REIASYA 345
W YL E+ G D + ++E+ L I DY E W Y+D++ + + +S
Sbjct: 271 WIQYLLAMERHGVDHCIISDMFEKALNAGFIQATDYVEIWQAYLDYLRRRVDFTQDSSKE 330
Query: 346 LDRATQIFLKRLPVIHL-FNARYKEQIGDTS 375
L+ F + + + R+ E GD S
Sbjct: 331 LEELRSAFARAVEYLKQEVEERFSES-GDPS 360
Score = 47 (21.6 bits), Expect = 0.00030, Sum P(3) = 0.00030
Identities = 16/59 (27%), Positives = 27/59 (45%)
Query: 656 EAAEQHSQDACDPEVLSLDLAHQVTNENETVQASEA-FSEED-DVQREYEHESKKDLKP 712
E AEQ Q + + +++ + + E + +ED D R+ EHES + KP
Sbjct: 502 EKAEQRKQSRAEKKASKKAKKNRIGEKRKADDDDEGEWGQEDKDPLRQREHESGPE-KP 559
Score = 45 (20.9 bits), Expect = 0.00052, Sum P(4) = 0.00052
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 592 QDKKFSPPEKSDSESGDDATSLPSNQKS-PLPENHDI 627
+DK P + + ESG + P+NQK P D+
Sbjct: 542 EDK--DPLRQREHESGPEKPDHPTNQKEKPSTSRKDV 576
Score = 40 (19.1 bits), Expect = 0.00052, Sum P(4) = 0.00052
Identities = 7/20 (35%), Positives = 14/20 (70%)
Query: 701 EYEHESKKDLKPLSLEGLSL 720
EYE+E++ L ++GL++
Sbjct: 731 EYENEAQASQAVLKMDGLTI 750
>DICTYBASE|DDB_G0278819 [details] [associations]
symbol:DDB_G0278819 "HAT repeat-containing protein"
species:44689 "Dictyostelium discoideum" [GO:0006396 "RNA
processing" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0005681
"spliceosomal complex" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0000245 "spliceosomal complex assembly"
evidence=ISS] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF02184 SMART:SM00386
dictyBase:DDB_G0278819 GO:GO:0005737 GenomeReviews:CM000152_GR
GO:GO:0016607 GO:GO:0005681 GO:GO:0003723 Gene3D:1.25.40.10
EMBL:AAFI02000024 GO:GO:0000245 eggNOG:NOG327505 KO:K12869
OMA:KFTFAKI RefSeq:XP_641986.1 ProteinModelPortal:Q54XP4
STRING:Q54XP4 PRIDE:Q54XP4 EnsemblProtists:DDB0233480
GeneID:8621718 KEGG:ddi:DDB_G0278819 ProtClustDB:CLSZ2729102
Uniprot:Q54XP4
Length = 705
Score = 125 (49.1 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 64/262 (24%), Positives = 105/262 (40%)
Query: 292 WHDYLSFAEKQGDFDWVVKLYER--CLIPCADYPEFWMRYVDFMESKGGREIASYALDRA 349
W Y K + + +++R CL+P + W +Y FME G A+ A+
Sbjct: 112 WIKYAEMEMKNKNINLARNIWDRAVCLLPRVS--QLWFKYT-FMEDMLGNYPAARAI--- 165
Query: 350 TQIFLKRLPVIHLFNA--RYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLG 407
+ +++ P +N+ ++++++ R F E YI +I+ E RLG
Sbjct: 166 FERWMQWKPEPQAWNSYLKFEQRLKLFENTRLIF-EKYILVHP-YIKTWIKYTKFEERLG 223
Query: 408 NFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPN- 466
N A ++ A+E E L + + +F Y + AR I I HVP
Sbjct: 224 NIENARTIFQRAIEFLGEDGNDEQLFIAFAKFEE-KYK---EIERARVIYKYAIDHVPKS 279
Query: 467 -CKLLLEELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLD 525
K L + F HG R I I D V+ + + +K S DI YL+ +
Sbjct: 280 RAKDLFDTFTNFEKQHGDR--IGIEDVVLGKKRFQYEEEIKKNSKN--YDIWFDYLKMEE 335
Query: 526 LCGTIHDIRNAWNQHIKLFPHT 547
+ G I R + + I P T
Sbjct: 336 INGEIEKTREIYERSIGNLPPT 357
Score = 51 (23.0 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 14/51 (27%), Positives = 25/51 (49%)
Query: 109 VWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQ 159
++ Y + S +D R +F+R F+ D+ T+W KY E E+ +
Sbjct: 77 IYIKYAAWEESQ-KDLTRARSVFER---FLDIDHRIPTVWIKYAEMEMKNK 123
>DICTYBASE|DDB_G0271670 [details] [associations]
symbol:DDB_G0271670 species:44689 "Dictyostelium
discoideum" [GO:0005576 "extracellular region" evidence=IEA]
dictyBase:DDB_G0271670 GO:GO:0005576 EMBL:AAFI02000006
ProtClustDB:CLSZ2431310 RefSeq:XP_645495.1
ProteinModelPortal:Q75JC9 EnsemblProtists:DDB0168484 GeneID:8618123
KEGG:ddi:DDB_G0271670 OMA:EITNEEP Uniprot:Q75JC9
Length = 374
Score = 122 (48.0 bits), Expect = 0.00042, P = 0.00042
Identities = 49/256 (19%), Positives = 92/256 (35%)
Query: 572 SNVASLPQPFESEHLMPSASQDKKFSPPEKSDSESGDDATSLPSNQKSPLPENHDIRSDG 631
S+ +S S S+S S S S S ++S S+ S + S
Sbjct: 119 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 178
Query: 632 AEVDILLSGEADSSSQDRMQQVPPEAAEQHSQDACDPEVLSLDLAHQVTNENETVQASEA 691
+ S + SSS ++ S + S + ++ + + +S +
Sbjct: 179 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 238
Query: 692 FSEEDDVQREYEHESKKDLKPLSLEGLSLDPGGNDSPGSLCATSHECEAPQKTNFSHESM 751
S S S S + S S ++S + ++ S S
Sbjct: 239 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 298
Query: 752 LKSEAPRETSLSDGSVLGASQNNNGSHFAPSSMGTQASSSAPIQTRTVSPSSSASHQNFI 811
S + +S S S +S +++ S + SS + +SSS+ + + S SSS+S +
Sbjct: 299 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 358
Query: 812 PEAHSHPQTPANSGRN 827
+ S + ++SG N
Sbjct: 359 SSSSSSSSSSSSSGEN 374
>WB|WBGene00019762 [details] [associations]
symbol:M03F8.3 species:6239 "Caenorhabditis elegans"
[GO:0005622 "intracellular" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0018996 "molting
cycle, collagen and cuticulin-based cuticle" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF02184 PROSITE:PS50293 SMART:SM00386
GO:GO:0009792 GO:GO:0040007 GO:GO:0002119 GO:GO:0018996
GO:GO:0040011 GO:GO:0000003 GO:GO:0005622 GO:GO:0006396
Gene3D:1.25.40.10 eggNOG:NOG327505 KO:K12869 HOGENOM:HOG000207972
OMA:KFTFAKI GeneTree:ENSGT00550000074931 EMBL:FO080495
RefSeq:NP_001122979.1 ProteinModelPortal:A9D4S6 SMR:A9D4S6
STRING:A9D4S6 PaxDb:A9D4S6 EnsemblMetazoa:M03F8.3b GeneID:178979
KEGG:cel:CELE_M03F8.3 UCSC:M03F8.3a CTD:178979 WormBase:M03F8.3b
InParanoid:A9D4S6 NextBio:903380 ArrayExpress:A9D4S6 Uniprot:A9D4S6
Length = 747
Score = 99 (39.9 bits), Expect = 0.00056, Sum P(3) = 0.00056
Identities = 28/113 (24%), Positives = 49/113 (43%)
Query: 76 WRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRAL 135
W KY + + I + VFERA+ S+ +W Y + M + N R +F RA+
Sbjct: 89 WIKYGKWEESIGEIQRARSVFERALDVDHRSISIWLQYAEMEMRC-KQINHARNVFDRAI 147
Query: 136 SFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRF-PSKKLHHYYDSFK 187
+ + + W KY E + QIF + + + P ++ Y +F+
Sbjct: 148 TIMPR---AMQFWLKYSYMEEVIENIPGARQIFERWIEWEPPEQAWQTYINFE 197
Score = 72 (30.4 bits), Expect = 0.00056, Sum P(3) = 0.00056
Identities = 33/140 (23%), Positives = 58/140 (41%)
Query: 292 WHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQ 351
W Y++F + + D +Y+R L + W++Y F E G A A ++A +
Sbjct: 190 WQTYINFELRYKEIDRARSVYQRFLHVHGINVQNWIKYAKFEERNGYIGNARAAYEKAME 249
Query: 352 IFLKR---LPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFK--ANMERRL 406
F + V+ F A ++E+ + AR F + S E++ FK E++
Sbjct: 250 YFGEEDINETVLVAF-ALFEERQKEHERARGIFKYGLDNLPSNRTEEI-FKHYTQHEKKF 307
Query: 407 GNFVAACDTYKEALETAAEQ 426
G V D +T E+
Sbjct: 308 GERVGIEDVIISKRKTQYEK 327
Score = 48 (22.0 bits), Expect = 0.00056, Sum P(3) = 0.00056
Identities = 21/78 (26%), Positives = 30/78 (38%)
Query: 560 KSLRAFIRGKRESNVASLPQPFESEHLMPSASQDKKFSPPEKSDSES---GDDATSLP-S 615
K L A R KRE A+ E + +P D++ K E GD T L S
Sbjct: 662 KLLEAAARWKREREEAAARAAQELDAPIPEGDDDEEKEEAGKDAEEKVREGDSDTDLSES 721
Query: 616 NQKSPLPENHDIRSDGAE 633
+ S + SD ++
Sbjct: 722 SSSSDSESSSSSSSDSSD 739
>ASPGD|ASPL0000051943 [details] [associations]
symbol:AN0461 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] InterPro:IPR006594 PROSITE:PS50896 SMART:SM00667
Pfam:PF05022 EMBL:BN001308 EMBL:AACD01000007 InterPro:IPR007718
OMA:RKHFSRI RefSeq:XP_658065.1 EnsemblFungi:CADANIAT00002232
GeneID:2876234 KEGG:ani:AN0461.2 eggNOG:NOG131021
HOGENOM:HOG000211567 OrthoDB:EOG4MKRS7 Uniprot:Q5BG69
Length = 435
Score = 121 (47.7 bits), Expect = 0.00069, P = 0.00069
Identities = 62/275 (22%), Positives = 109/275 (39%)
Query: 559 TKSL-RAFIRGKRESNVASLPQPFES--EHLMPSASQDKKFSPPEKSDSESGDDATSLPS 615
TK L + I ++S+V SL + F+S L S SD++S D+ S S
Sbjct: 49 TKELAKKSISASKKSDVPSLLEIFQSWESQLNRKNVPSSSSSASSDSDADSSSDSDSSDS 108
Query: 616 N-QKSPLPENHDIRSDGAEVDILLSGEADSSSQDRMQQVPPEAAEQHSQDACDPEVLSLD 674
+ + S P+ RS S A SSS ++ +D + +
Sbjct: 109 DVEMSEAPKVQRRRSSSTSSSSS-SSSASSSSSSSSSSSSSSDSDADDEDEDEAALAPGP 167
Query: 675 LAHQVTNENET-VQASEAFSEEDDVQREYEHESKKDLKPLSLEGLSLDPGGNDSPGSLCA 733
A V + E+ +S + SEE ++ + SK + S S D + S +
Sbjct: 168 AAKGVKRKAESSASSSGSDSEETPKAKKTKLTSKAEESSSSSSESSSDSSSDSDSDSDSS 227
Query: 734 TSHECEAPQKTNFSHESMLKSEAPRETSLSDGSVLGASQNNNGSHFAPSSMGTQASSSAP 793
+S E E+ +++ SH S S + S SD S +S +++ S S + +
Sbjct: 228 SSSESESESESDASHSSSSSSSSDSSDSSSDSSSDSSSDSSSDSSSESESDAAKKADKKA 287
Query: 794 IQ--TRTVSPSSSASHQNFIPEAHSHPQTPANSGR 826
++ T T P S +S + S + +++ R
Sbjct: 288 LKAATETPLPPSDSSSSGSSDSSSSSGEESSSTSR 322
>UNIPROTKB|G3MZB1 [details] [associations]
symbol:G3MZB1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071460 "cellular response to cell-matrix adhesion"
evidence=IEA] GeneTree:ENSGT00550000074777 GO:GO:0071460
EMBL:DAAA02018360 OMA:NSCGNEG EMBL:DAAA02018358 EMBL:DAAA02018359
Ensembl:ENSBTAT00000063098 Uniprot:G3MZB1
Length = 682
Score = 123 (48.4 bits), Expect = 0.00081, P = 0.00081
Identities = 50/195 (25%), Positives = 87/195 (44%)
Query: 589 SASQDKKFSPPEKSDSESGDDATSLPSNQKSPLPENHDIRSDGAEVDILLSGEADSSSQD 648
S S D K + SDS+S D+ S S+ S ++ D SD ++ D S ++DS S
Sbjct: 469 SDSSDSKSDSSDSSDSDSKSDSDSSDSSDSSD-SDSSD-SSDSSDSDSSDSSDSDSKSDS 526
Query: 649 RMQQVPPEAAEQHSQDACDPEVLSLDLAHQVTNENETVQASEAFSEEDDVQREYEHESKK 708
+ S D+ D + S ++ +++ +S++ D + + S
Sbjct: 527 DSSDSSNSSDSSDSSDS-DTKSDSDSSDSSDSDSSDSSDSSDSSDSSDSSDSDSSNSSDS 585
Query: 709 DLKPLSLEGLSLDPGGNDSPGSLCATSHECEAPQKTNFSHESMLKSEAPRETSLSDGSVL 768
D K S S D +DS S + S + ++ ++ S++S KS++ S SD S
Sbjct: 586 DSKSDSDSSDSSDSDSSDSSDSDSSDSSDSDSSDSSD-SNDSNTKSDSDSSDS-SDSSD- 642
Query: 769 GASQNNNGSHFAPSS 783
S++ NG+H SS
Sbjct: 643 SKSKSGNGNHNGGSS 657
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.131 0.389 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 1070 933 0.00092 122 3 11 22 0.42 34
38 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 56
No. of states in DFA: 631 (67 KB)
Total size of DFA: 496 KB (2230 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 104.84u 0.19s 105.03t Elapsed: 00:00:04
Total cpu time: 104.85u 0.19s 105.04t Elapsed: 00:00:04
Start: Mon May 20 18:12:09 2013 End: Mon May 20 18:12:13 2013