Query 001486
Match_columns 1070
No_of_seqs 595 out of 3261
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 02:02:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001486.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001486hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2047 mRNA splicing factor [ 100.0 1.2E-68 2.6E-73 595.1 44.1 575 16-615 6-696 (835)
2 KOG0495 HAT repeat protein [RN 100.0 2.7E-50 5.9E-55 448.7 42.2 489 22-584 334-830 (913)
3 KOG1914 mRNA cleavage and poly 100.0 3.3E-45 7.1E-50 402.6 49.6 456 25-547 8-505 (656)
4 KOG1258 mRNA processing protei 100.0 3.6E-43 7.7E-48 396.9 49.2 513 23-544 31-545 (577)
5 KOG1915 Cell cycle control pro 100.0 8.5E-42 1.8E-46 369.1 41.4 496 10-549 36-591 (677)
6 KOG1915 Cell cycle control pro 100.0 6.5E-38 1.4E-42 339.1 44.7 486 23-540 93-622 (677)
7 COG5107 RNA14 Pre-mRNA 3'-end 100.0 2.2E-35 4.7E-40 317.8 39.9 465 14-549 19-537 (660)
8 KOG2047 mRNA splicing factor [ 100.0 1.6E-30 3.4E-35 291.2 45.0 497 24-549 47-693 (835)
9 KOG0495 HAT repeat protein [RN 100.0 2.5E-30 5.5E-35 289.6 45.1 466 24-549 272-754 (913)
10 KOG4626 O-linked N-acetylgluco 100.0 3.4E-28 7.3E-33 270.7 32.8 396 6-499 89-484 (966)
11 KOG4626 O-linked N-acetylgluco 100.0 4.5E-28 9.7E-33 269.8 30.1 396 53-549 96-491 (966)
12 KOG0128 RNA-binding protein SA 99.9 2.6E-24 5.6E-29 249.1 41.0 435 22-540 98-560 (881)
13 TIGR02917 PEP_TPR_lipo putativ 99.9 3.3E-23 7.1E-28 267.2 55.8 482 23-549 383-872 (899)
14 TIGR02917 PEP_TPR_lipo putativ 99.9 6E-23 1.3E-27 264.8 54.5 474 23-541 417-898 (899)
15 PRK11447 cellulose synthase su 99.9 1.8E-21 3.9E-26 256.0 55.0 483 22-549 47-638 (1157)
16 TIGR00990 3a0801s09 mitochondr 99.9 1.4E-21 3E-26 241.7 50.9 436 39-548 129-576 (615)
17 PRK11447 cellulose synthase su 99.9 2.9E-21 6.4E-26 254.0 51.3 442 44-544 276-741 (1157)
18 TIGR00990 3a0801s09 mitochondr 99.9 5E-21 1.1E-25 236.8 41.4 392 23-500 147-571 (615)
19 KOG1914 mRNA cleavage and poly 99.9 1.8E-20 3.8E-25 208.1 36.1 421 18-488 34-492 (656)
20 PRK15174 Vi polysaccharide exp 99.9 1.7E-19 3.6E-24 223.0 43.5 326 53-467 56-385 (656)
21 PRK15174 Vi polysaccharide exp 99.9 2.2E-19 4.7E-24 222.0 43.8 362 73-548 42-408 (656)
22 PRK10049 pgaA outer membrane p 99.9 8.5E-19 1.8E-23 221.1 49.0 400 25-502 37-458 (765)
23 PRK09782 bacteriophage N4 rece 99.9 6.9E-18 1.5E-22 213.1 51.5 494 23-551 64-714 (987)
24 KOG2396 HAT (Half-A-TPR) repea 99.9 1.3E-17 2.8E-22 184.7 42.9 444 25-546 93-562 (568)
25 PRK10049 pgaA outer membrane p 99.8 6.3E-18 1.4E-22 213.2 43.2 423 32-549 13-462 (765)
26 KOG1070 rRNA processing protei 99.8 4.7E-19 1E-23 213.6 25.8 251 268-544 1445-1701(1710)
27 PRK09782 bacteriophage N4 rece 99.8 2.8E-16 6E-21 198.7 48.3 234 292-548 512-745 (987)
28 KOG0547 Translocase of outer m 99.8 4.6E-16 9.9E-21 171.4 37.8 432 53-546 129-569 (606)
29 KOG2002 TPR-containing nuclear 99.8 5E-15 1.1E-19 175.3 42.3 243 289-549 496-751 (1018)
30 KOG2076 RNA polymerase III tra 99.8 1.9E-14 4E-19 169.8 43.4 501 22-549 158-775 (895)
31 PRK11788 tetratricopeptide rep 99.7 6.7E-15 1.4E-19 172.2 37.8 301 82-503 44-354 (389)
32 PRK11788 tetratricopeptide rep 99.7 8E-15 1.7E-19 171.5 38.4 293 53-462 49-346 (389)
33 KOG2002 TPR-containing nuclear 99.7 1.6E-13 3.4E-18 162.9 48.1 469 14-548 141-646 (1018)
34 KOG0547 Translocase of outer m 99.7 1.2E-14 2.7E-19 160.3 34.0 416 22-499 134-565 (606)
35 PLN03218 maturation of RBCL 1; 99.7 2E-13 4.4E-18 174.0 49.1 409 35-544 368-784 (1060)
36 PF13429 TPR_15: Tetratricopep 99.7 5.9E-17 1.3E-21 180.6 14.0 134 287-422 144-277 (280)
37 KOG1070 rRNA processing protei 99.7 7.4E-16 1.6E-20 186.4 23.5 217 307-544 1442-1664(1710)
38 PLN03081 pentatricopeptide (PP 99.7 7E-14 1.5E-18 175.8 42.1 438 36-549 86-529 (697)
39 PRK14574 hmsH outer membrane p 99.7 6.7E-13 1.5E-17 165.0 47.9 438 23-503 54-516 (822)
40 KOG1155 Anaphase-promoting com 99.7 2.7E-13 5.9E-18 149.1 38.7 183 296-487 337-526 (559)
41 KOG1258 mRNA processing protei 99.7 3.9E-14 8.4E-19 162.0 33.4 445 25-549 20-476 (577)
42 PF13429 TPR_15: Tetratricopep 99.7 1.8E-16 3.8E-21 176.8 13.6 164 291-463 112-277 (280)
43 PLN03218 maturation of RBCL 1; 99.7 1.8E-12 3.9E-17 165.5 51.4 141 25-173 392-535 (1060)
44 KOG1155 Anaphase-promoting com 99.7 6E-13 1.3E-17 146.5 38.4 223 306-543 313-536 (559)
45 PF05843 Suf: Suppressor of fo 99.7 3E-16 6.6E-21 173.7 13.0 139 394-548 2-141 (280)
46 KOG2076 RNA polymerase III tra 99.7 1.7E-12 3.6E-17 153.5 43.9 372 37-454 139-546 (895)
47 PLN03077 Protein ECB2; Provisi 99.6 7.1E-13 1.5E-17 170.7 42.9 456 35-549 220-692 (857)
48 PRK14574 hmsH outer membrane p 99.6 6.1E-12 1.3E-16 156.6 46.1 454 31-549 28-519 (822)
49 COG5107 RNA14 Pre-mRNA 3'-end 99.6 1.3E-12 2.9E-17 142.7 34.4 413 22-488 61-522 (660)
50 KOG2396 HAT (Half-A-TPR) repea 99.6 1.2E-11 2.5E-16 137.9 42.1 437 25-545 39-527 (568)
51 PLN03081 pentatricopeptide (PP 99.6 2.9E-12 6.2E-17 161.3 42.4 431 35-544 121-558 (697)
52 KOG1126 DNA-binding cell divis 99.6 2.7E-13 5.8E-18 156.1 26.5 290 55-467 335-624 (638)
53 PLN03077 Protein ECB2; Provisi 99.6 7.3E-12 1.6E-16 161.4 39.3 192 291-496 526-719 (857)
54 TIGR00540 hemY_coli hemY prote 99.5 2.5E-11 5.4E-16 142.7 39.0 319 26-422 61-399 (409)
55 PF05843 Suf: Suppressor of fo 99.5 2.9E-14 6.3E-19 158.0 12.8 133 39-174 3-136 (280)
56 KOG1126 DNA-binding cell divis 99.5 9.7E-13 2.1E-17 151.5 25.0 194 284-486 416-609 (638)
57 COG3063 PilF Tfp pilus assembl 99.5 1.2E-12 2.6E-17 133.2 22.4 207 290-549 36-242 (250)
58 PRK12370 invasion protein regu 99.5 3E-12 6.5E-17 156.1 30.3 162 289-461 372-533 (553)
59 TIGR02521 type_IV_pilW type IV 99.5 2.2E-12 4.7E-17 138.0 25.5 200 288-498 30-230 (234)
60 KOG2003 TPR repeat-containing 99.5 1.6E-11 3.5E-16 133.7 30.8 449 54-549 216-695 (840)
61 PRK12370 invasion protein regu 99.5 5.3E-12 1.2E-16 153.9 28.4 248 265-543 279-535 (553)
62 KOG1173 Anaphase-promoting com 99.5 3.4E-11 7.4E-16 136.1 31.2 355 22-469 160-524 (611)
63 PRK10747 putative protoheme IX 99.5 1.2E-10 2.7E-15 136.2 37.6 144 26-173 61-215 (398)
64 COG3063 PilF Tfp pilus assembl 99.5 4.6E-12 1E-16 129.0 21.6 182 278-469 58-242 (250)
65 KOG1173 Anaphase-promoting com 99.5 1.3E-10 2.8E-15 131.6 33.5 213 284-502 307-520 (611)
66 TIGR00540 hemY_coli hemY prote 99.5 6.8E-11 1.5E-15 139.0 33.2 280 23-386 104-398 (409)
67 TIGR02521 type_IV_pilW type IV 99.4 1.9E-11 4.1E-16 130.7 24.8 205 322-545 30-234 (234)
68 KOG4162 Predicted calmodulin-b 99.4 1.9E-09 4E-14 126.2 42.4 402 67-549 317-789 (799)
69 KOG0128 RNA-binding protein SA 99.4 9.6E-10 2.1E-14 129.3 37.3 405 55-545 95-528 (881)
70 KOG0548 Molecular co-chaperone 99.4 1.2E-09 2.6E-14 123.6 36.3 426 22-498 21-487 (539)
71 PRK11189 lipoprotein NlpI; Pro 99.4 7.6E-11 1.6E-15 132.2 26.5 199 287-501 62-266 (296)
72 KOG1174 Anaphase-promoting com 99.4 5.7E-10 1.2E-14 121.4 30.7 365 24-483 151-520 (564)
73 PRK10747 putative protoheme IX 99.4 4.3E-10 9.4E-15 131.6 32.4 285 25-423 102-391 (398)
74 PRK11189 lipoprotein NlpI; Pro 99.4 4.5E-11 9.8E-16 134.1 22.7 225 304-547 41-269 (296)
75 KOG2003 TPR repeat-containing 99.4 3.7E-10 8.1E-15 123.3 27.6 199 291-502 492-691 (840)
76 KOG1174 Anaphase-promoting com 99.3 1.1E-08 2.3E-13 111.8 37.8 244 284-548 261-505 (564)
77 KOG4162 Predicted calmodulin-b 99.3 9.1E-09 2E-13 120.6 39.4 382 30-500 316-783 (799)
78 KOG1156 N-terminal acetyltrans 99.3 4.3E-08 9.3E-13 113.0 42.3 387 25-496 29-467 (700)
79 KOG1840 Kinesin light chain [C 99.3 6E-10 1.3E-14 130.4 27.2 256 284-546 194-482 (508)
80 KOG1127 TPR repeat-containing 99.3 4.6E-09 9.9E-14 125.2 34.2 154 23-182 478-634 (1238)
81 PLN02789 farnesyltranstransfer 99.3 1.1E-09 2.4E-14 122.9 27.4 204 287-499 35-249 (320)
82 KOG0624 dsRNA-activated protei 99.3 2.2E-08 4.7E-13 106.9 33.7 328 32-469 33-376 (504)
83 KOG1125 TPR repeat-containing 99.2 5.7E-10 1.2E-14 127.1 21.8 96 289-385 430-525 (579)
84 KOG1127 TPR repeat-containing 99.2 1.6E-08 3.6E-13 120.6 33.2 415 23-477 512-976 (1238)
85 KOG0548 Molecular co-chaperone 99.2 3.3E-08 7.2E-13 112.1 34.1 391 53-502 16-457 (539)
86 KOG1156 N-terminal acetyltrans 99.2 2.3E-07 4.9E-12 107.1 39.7 388 24-423 62-512 (700)
87 KOG1125 TPR repeat-containing 99.2 9.8E-10 2.1E-14 125.2 19.8 250 263-534 301-562 (579)
88 cd05804 StaR_like StaR_like; a 99.2 7E-08 1.5E-12 111.5 34.3 313 33-463 2-336 (355)
89 KOG1840 Kinesin light chain [C 99.2 8.3E-09 1.8E-13 120.9 26.3 209 286-498 238-477 (508)
90 PRK15359 type III secretion sy 99.1 9.5E-10 2.1E-14 109.4 15.6 126 342-479 12-137 (144)
91 KOG3060 Uncharacterized conser 99.1 1.2E-08 2.5E-13 105.6 23.3 190 304-502 27-222 (289)
92 PLN02789 farnesyltranstransfer 99.1 9.5E-09 2.1E-13 115.4 24.5 188 284-480 66-267 (320)
93 KOG1129 TPR repeat-containing 99.1 1.7E-08 3.7E-13 107.1 23.6 233 295-549 229-464 (478)
94 KOG1129 TPR repeat-containing 99.1 2E-09 4.2E-14 114.1 16.5 278 25-422 162-458 (478)
95 KOG2376 Signal recognition par 99.1 1.2E-06 2.5E-11 100.5 39.6 407 38-549 14-493 (652)
96 TIGR03302 OM_YfiO outer membra 99.1 5.7E-09 1.2E-13 113.2 20.8 177 283-465 27-234 (235)
97 PF08424 NRDE-2: NRDE-2, neces 99.1 2.9E-09 6.2E-14 120.4 19.0 150 24-173 6-182 (321)
98 PF12569 NARP1: NMDA receptor- 99.1 3.2E-07 6.9E-12 109.0 36.2 311 44-427 11-339 (517)
99 COG2956 Predicted N-acetylgluc 99.1 2.5E-06 5.5E-11 91.3 38.5 180 291-481 143-328 (389)
100 KOG0624 dsRNA-activated protei 99.1 3E-07 6.5E-12 98.4 31.0 296 24-392 59-374 (504)
101 KOG1128 Uncharacterized conser 99.0 7E-09 1.5E-13 120.8 19.4 228 286-549 395-622 (777)
102 PRK15359 type III secretion sy 99.0 4.7E-09 1E-13 104.5 14.2 126 308-444 12-137 (144)
103 PRK15179 Vi polysaccharide bio 99.0 2.2E-08 4.9E-13 122.9 21.6 138 319-465 82-219 (694)
104 PRK15179 Vi polysaccharide bio 99.0 2.3E-08 5E-13 122.8 21.6 138 284-423 81-218 (694)
105 cd05804 StaR_like StaR_like; a 99.0 2.2E-06 4.7E-11 99.0 37.2 175 284-462 109-292 (355)
106 PRK10370 formate-dependent nit 98.9 1.7E-08 3.6E-13 106.1 15.9 117 22-141 58-177 (198)
107 COG2956 Predicted N-acetylgluc 98.9 3.1E-07 6.7E-12 98.1 24.5 242 282-546 62-314 (389)
108 PRK10370 formate-dependent nit 98.9 3.7E-08 8E-13 103.4 17.8 118 303-422 53-173 (198)
109 PRK14720 transcript cleavage f 98.9 4.6E-07 1E-11 112.1 28.9 241 65-443 23-267 (906)
110 PRK14720 transcript cleavage f 98.9 1.1E-07 2.4E-12 117.4 23.2 227 284-549 26-258 (906)
111 TIGR03302 OM_YfiO outer membra 98.9 1.2E-07 2.5E-12 102.9 19.7 168 320-499 30-231 (235)
112 PF12569 NARP1: NMDA receptor- 98.9 3.6E-06 7.9E-11 100.1 33.3 307 75-465 6-336 (517)
113 COG5010 TadD Flp pilus assembl 98.9 1.3E-07 2.9E-12 99.0 18.4 170 308-487 52-221 (257)
114 TIGR02552 LcrH_SycD type III s 98.8 7.8E-08 1.7E-12 94.5 14.6 120 345-473 5-124 (135)
115 COG3071 HemY Uncharacterized e 98.8 3.6E-05 7.7E-10 85.2 35.9 144 25-172 60-214 (400)
116 KOG1128 Uncharacterized conser 98.8 1.1E-07 2.4E-12 111.1 17.0 193 287-498 422-614 (777)
117 KOG3060 Uncharacterized conser 98.8 5.5E-07 1.2E-11 93.4 19.8 160 301-469 64-226 (289)
118 KOG3617 WD40 and TPR repeat-co 98.8 7.8E-06 1.7E-10 96.0 30.6 213 290-539 913-1170(1416)
119 TIGR02552 LcrH_SycD type III s 98.7 2.5E-07 5.5E-12 90.8 15.8 115 24-141 4-118 (135)
120 COG5010 TadD Flp pilus assembl 98.7 3.6E-07 7.9E-12 95.8 16.9 168 284-461 62-229 (257)
121 COG3071 HemY Uncharacterized e 98.7 5.3E-05 1.1E-09 83.9 33.9 235 286-544 150-391 (400)
122 PRK15363 pathogenicity island 98.6 6.7E-07 1.4E-11 88.0 14.4 100 360-467 37-136 (157)
123 KOG0553 TPR repeat-containing 98.6 3.2E-07 7E-12 97.8 12.1 110 368-485 91-200 (304)
124 PF08424 NRDE-2: NRDE-2, neces 98.6 2.5E-06 5.4E-11 96.6 19.8 112 58-173 4-130 (321)
125 COG5191 Uncharacterized conser 98.6 1.7E-07 3.6E-12 99.1 9.1 140 25-172 39-198 (435)
126 COG4783 Putative Zn-dependent 98.6 1.2E-05 2.5E-10 91.2 24.3 152 320-481 303-454 (484)
127 COG4783 Putative Zn-dependent 98.6 2.6E-06 5.7E-11 96.3 19.0 163 287-475 304-466 (484)
128 KOG2376 Signal recognition par 98.6 0.00065 1.4E-08 78.6 37.7 127 373-502 356-489 (652)
129 COG5191 Uncharacterized conser 98.5 1.9E-07 4.1E-12 98.7 7.3 107 25-139 95-202 (435)
130 PRK15363 pathogenicity island 98.5 3.3E-06 7.2E-11 83.1 15.2 104 284-388 29-133 (157)
131 KOG0550 Molecular chaperone (D 98.5 3.3E-05 7.1E-10 85.4 24.3 137 284-422 198-350 (486)
132 PF14938 SNAP: Soluble NSF att 98.5 1E-05 2.2E-10 90.3 20.2 180 304-502 30-227 (282)
133 PLN03088 SGT1, suppressor of 98.5 2.6E-06 5.6E-11 98.0 15.6 105 365-477 9-113 (356)
134 KOG0553 TPR repeat-containing 98.4 3.7E-06 7.9E-11 89.9 15.0 114 291-406 83-196 (304)
135 KOG3785 Uncharacterized conser 98.4 0.00061 1.3E-08 73.9 31.3 83 85-175 34-121 (557)
136 KOG0550 Molecular chaperone (D 98.4 2.7E-05 5.8E-10 86.1 21.4 161 297-466 177-353 (486)
137 PRK04841 transcriptional regul 98.4 0.001 2.3E-08 86.9 40.7 250 292-549 494-766 (903)
138 COG4235 Cytochrome c biogenesi 98.4 7E-06 1.5E-10 88.5 15.7 117 23-142 142-261 (287)
139 KOG3598 Thyroid hormone recept 98.4 5.5E-06 1.2E-10 101.6 16.0 12 827-838 1963-1974(2220)
140 KOG3617 WD40 and TPR repeat-co 98.4 7.3E-05 1.6E-09 88.1 24.3 136 290-461 859-994 (1416)
141 PLN03088 SGT1, suppressor of 98.4 4.5E-06 9.8E-11 96.0 14.7 99 296-396 9-107 (356)
142 PRK04841 transcriptional regul 98.4 0.0011 2.5E-08 86.5 38.8 175 292-467 576-764 (903)
143 cd00189 TPR Tetratricopeptide 98.3 5.8E-06 1.3E-10 73.7 11.3 98 360-465 2-99 (100)
144 PF14938 SNAP: Soluble NSF att 98.3 3.6E-05 7.8E-10 85.8 18.6 139 326-466 78-228 (282)
145 TIGR02795 tol_pal_ybgF tol-pal 98.3 1.5E-05 3.3E-10 75.8 13.5 106 359-469 3-111 (119)
146 cd00189 TPR Tetratricopeptide 98.2 9.7E-06 2.1E-10 72.2 11.1 98 39-139 2-99 (100)
147 PF09976 TPR_21: Tetratricopep 98.2 4E-05 8.6E-10 76.4 16.1 117 301-420 23-145 (145)
148 PF13414 TPR_11: TPR repeat; P 98.2 8.8E-06 1.9E-10 69.7 8.4 66 393-465 3-69 (69)
149 KOG3616 Selective LIM binding 98.1 0.021 4.6E-07 67.2 36.1 32 514-545 995-1026(1636)
150 TIGR02795 tol_pal_ybgF tol-pal 98.1 7.8E-05 1.7E-09 70.9 13.7 102 37-141 2-109 (119)
151 COG4235 Cytochrome c biogenesi 98.0 6.1E-05 1.3E-09 81.4 13.7 118 304-423 137-257 (287)
152 PF13432 TPR_16: Tetratricopep 98.0 1.4E-05 3.1E-10 67.5 7.2 64 398-468 2-65 (65)
153 PRK02603 photosystem I assembl 98.0 9.8E-05 2.1E-09 75.9 14.7 121 319-468 31-154 (172)
154 KOG3785 Uncharacterized conser 98.0 0.00052 1.1E-08 74.4 20.0 170 284-472 54-223 (557)
155 KOG3616 Selective LIM binding 98.0 0.042 9.1E-07 64.8 36.3 274 252-542 659-991 (1636)
156 PRK11906 transcriptional regul 98.0 0.00016 3.5E-09 82.7 17.0 149 305-463 274-436 (458)
157 PRK10153 DNA-binding transcrip 98.0 0.00017 3.7E-09 86.5 18.1 86 376-469 402-488 (517)
158 PRK10153 DNA-binding transcrip 98.0 0.0001 2.3E-09 88.4 15.7 141 286-434 334-488 (517)
159 CHL00033 ycf3 photosystem I as 98.0 0.0001 2.2E-09 75.4 13.6 84 323-407 35-120 (168)
160 KOG0543 FKBP-type peptidyl-pro 98.0 0.00011 2.4E-09 82.0 14.5 101 395-504 259-359 (397)
161 PF09976 TPR_21: Tetratricopep 98.0 0.00036 7.8E-09 69.5 16.8 115 53-172 25-145 (145)
162 PF13414 TPR_11: TPR repeat; P 98.0 4.3E-05 9.3E-10 65.4 8.8 67 36-104 2-69 (69)
163 PF04733 Coatomer_E: Coatomer 97.9 0.00014 3E-09 81.0 14.8 194 289-498 66-263 (290)
164 PF09295 ChAPs: ChAPs (Chs5p-A 97.9 0.00017 3.6E-09 83.0 15.2 120 294-418 174-293 (395)
165 PF12895 Apc3: Anaphase-promot 97.9 3.5E-05 7.6E-10 68.9 7.7 79 303-383 3-83 (84)
166 PF14559 TPR_19: Tetratricopep 97.9 4.3E-05 9.2E-10 65.2 7.8 63 53-115 5-67 (68)
167 PRK10803 tol-pal system protei 97.9 0.00022 4.8E-09 78.0 15.3 95 370-469 155-252 (263)
168 PF13432 TPR_16: Tetratricopep 97.9 4.3E-05 9.3E-10 64.6 7.4 62 44-107 4-65 (65)
169 COG0457 NrfG FOG: TPR repeat [ 97.9 0.011 2.4E-07 61.3 27.7 223 304-546 38-268 (291)
170 KOG3598 Thyroid hormone recept 97.9 4.4E-05 9.6E-10 94.0 10.0 9 290-298 1251-1259(2220)
171 PF14559 TPR_19: Tetratricopep 97.9 4.7E-05 1E-09 64.9 7.6 65 405-476 3-67 (68)
172 PF12895 Apc3: Anaphase-promot 97.8 9.7E-05 2.1E-09 66.0 9.5 82 336-419 2-84 (84)
173 PRK02603 photosystem I assembl 97.8 0.0002 4.3E-09 73.6 12.7 106 26-134 22-132 (172)
174 KOG0543 FKBP-type peptidyl-pro 97.8 0.0002 4.2E-09 80.1 13.2 134 326-466 211-358 (397)
175 PF09295 ChAPs: ChAPs (Chs5p-A 97.8 0.00032 6.9E-09 80.7 15.0 122 325-458 171-292 (395)
176 CHL00033 ycf3 photosystem I as 97.8 0.00036 7.8E-09 71.4 14.0 92 25-118 21-117 (168)
177 PRK10803 tol-pal system protei 97.8 0.00035 7.7E-09 76.4 14.5 103 36-141 141-250 (263)
178 PF08311 Mad3_BUB1_I: Mad3/BUB 97.8 0.00047 1E-08 66.6 13.6 117 307-461 3-126 (126)
179 COG3898 Uncharacterized membra 97.8 0.096 2.1E-06 58.3 32.3 149 302-463 242-392 (531)
180 COG4700 Uncharacterized protei 97.8 0.0044 9.5E-08 62.0 20.1 133 361-499 92-225 (251)
181 PF08311 Mad3_BUB1_I: Mad3/BUB 97.8 0.00047 1E-08 66.6 13.4 108 56-172 2-126 (126)
182 KOG2053 Mitochondrial inherita 97.7 0.25 5.3E-06 60.7 41.2 116 53-169 23-138 (932)
183 KOG3081 Vesicle coat complex C 97.7 0.0096 2.1E-07 63.1 23.1 181 289-486 72-259 (299)
184 PF12688 TPR_5: Tetratrico pep 97.7 0.00084 1.8E-08 64.1 14.2 94 291-385 3-102 (120)
185 COG0457 NrfG FOG: TPR repeat [ 97.7 0.0074 1.6E-07 62.7 23.3 199 290-500 60-265 (291)
186 PF12688 TPR_5: Tetratrico pep 97.7 0.0007 1.5E-08 64.6 13.5 100 359-462 2-103 (120)
187 PRK11906 transcriptional regul 97.7 0.0015 3.2E-08 75.0 17.3 121 339-468 274-406 (458)
188 PRK15331 chaperone protein Sic 97.6 0.00055 1.2E-08 68.0 11.9 92 364-463 43-134 (165)
189 PF13525 YfiO: Outer membrane 97.6 0.0087 1.9E-07 63.2 21.9 170 290-485 6-195 (203)
190 KOG0890 Protein kinase of the 97.6 0.22 4.9E-06 66.9 37.5 244 289-549 1629-1929(2382)
191 PF13371 TPR_9: Tetratricopept 97.6 0.00032 6.9E-09 60.6 8.6 60 53-112 9-68 (73)
192 PRK10866 outer membrane biogen 97.6 0.0075 1.6E-07 65.5 20.5 174 289-488 32-232 (243)
193 COG4700 Uncharacterized protei 97.6 0.0074 1.6E-07 60.4 18.1 136 324-468 90-231 (251)
194 PF13371 TPR_9: Tetratricopept 97.5 0.00047 1E-08 59.6 8.6 64 401-471 3-66 (73)
195 KOG4340 Uncharacterized conser 97.5 0.21 4.6E-06 53.7 31.7 141 23-175 30-174 (459)
196 PRK10866 outer membrane biogen 97.5 0.02 4.2E-07 62.3 22.8 53 295-347 181-236 (243)
197 KOG1941 Acetylcholine receptor 97.4 0.018 3.9E-07 63.1 20.8 162 301-463 95-275 (518)
198 PF13424 TPR_12: Tetratricopep 97.4 0.00055 1.2E-08 60.1 8.0 73 390-463 2-75 (78)
199 PF13428 TPR_14: Tetratricopep 97.4 0.00027 5.8E-09 54.6 5.0 43 433-476 1-43 (44)
200 PF04733 Coatomer_E: Coatomer 97.4 0.00082 1.8E-08 74.9 10.7 156 300-469 113-271 (290)
201 PRK15331 chaperone protein Sic 97.4 0.0025 5.5E-08 63.3 12.6 102 284-386 32-133 (165)
202 KOG4340 Uncharacterized conser 97.3 0.33 7.1E-06 52.3 30.6 92 292-383 147-266 (459)
203 PF13428 TPR_14: Tetratricopep 97.3 0.00044 9.6E-09 53.4 5.4 42 74-115 2-43 (44)
204 PF13525 YfiO: Outer membrane 97.3 0.016 3.5E-07 61.2 18.7 158 360-549 7-176 (203)
205 KOG1586 Protein required for f 97.3 0.01 2.2E-07 61.6 15.9 148 303-468 28-188 (288)
206 KOG0985 Vesicle coat protein c 97.3 0.96 2.1E-05 56.1 37.9 219 253-478 1060-1323(1666)
207 smart00777 Mad3_BUB1_I Mad3/BU 97.3 0.0017 3.6E-08 62.2 9.4 107 266-383 4-124 (125)
208 PF02259 FAT: FAT domain; Int 97.3 0.2 4.3E-06 57.6 28.9 121 285-406 142-305 (352)
209 PLN03098 LPA1 LOW PSII ACCUMUL 97.2 0.012 2.7E-07 67.5 17.5 70 283-352 69-141 (453)
210 KOG1586 Protein required for f 97.2 0.18 4E-06 52.6 23.5 161 291-467 56-228 (288)
211 smart00386 HAT HAT (Half-A-TPR 97.1 0.0007 1.5E-08 48.2 4.5 30 88-117 2-31 (33)
212 PF13281 DUF4071: Domain of un 97.1 0.13 2.9E-06 58.6 24.5 176 290-468 142-339 (374)
213 PF04184 ST7: ST7 protein; In 97.1 0.016 3.5E-07 66.6 17.1 163 302-471 181-383 (539)
214 smart00777 Mad3_BUB1_I Mad3/BU 97.1 0.0047 1E-07 59.1 10.8 104 58-170 4-124 (125)
215 PLN03098 LPA1 LOW PSII ACCUMUL 97.1 0.041 8.9E-07 63.4 19.6 68 318-386 70-140 (453)
216 smart00386 HAT HAT (Half-A-TPR 97.0 0.00091 2E-08 47.6 4.2 32 448-479 1-32 (33)
217 COG1729 Uncharacterized protei 97.0 0.0096 2.1E-07 63.9 13.6 107 326-438 144-254 (262)
218 PF04184 ST7: ST7 protein; In 97.0 0.1 2.2E-06 60.3 22.2 119 334-460 179-321 (539)
219 KOG4234 TPR repeat-containing 97.0 0.015 3.2E-07 58.9 13.6 97 368-471 105-205 (271)
220 COG1729 Uncharacterized protei 97.0 0.014 3E-07 62.8 14.2 98 369-470 152-251 (262)
221 PF03704 BTAD: Bacterial trans 97.0 0.018 3.8E-07 57.3 14.5 85 53-138 20-126 (146)
222 KOG1130 Predicted G-alpha GTPa 97.0 0.031 6.7E-07 62.2 17.1 139 324-463 136-304 (639)
223 KOG0985 Vesicle coat protein c 97.0 0.82 1.8E-05 56.7 29.9 39 366-405 1287-1325(1666)
224 KOG4648 Uncharacterized conser 97.0 0.0051 1.1E-07 66.7 10.7 106 292-399 100-205 (536)
225 KOG4555 TPR repeat-containing 96.9 0.0059 1.3E-07 57.5 9.6 92 368-463 53-144 (175)
226 KOG4234 TPR repeat-containing 96.9 0.015 3.2E-07 59.0 13.0 58 364-422 140-197 (271)
227 PF02259 FAT: FAT domain; Int 96.9 0.029 6.4E-07 64.5 17.8 120 319-444 142-303 (352)
228 KOG4648 Uncharacterized conser 96.9 0.0031 6.8E-08 68.3 8.6 101 369-477 108-208 (536)
229 PF13424 TPR_12: Tetratricopep 96.9 0.0044 9.5E-08 54.3 8.2 65 359-423 6-76 (78)
230 PF06552 TOM20_plant: Plant sp 96.8 0.0077 1.7E-07 60.6 10.0 93 374-474 7-120 (186)
231 COG4785 NlpI Lipoprotein NlpI, 96.8 0.056 1.2E-06 55.6 15.9 199 304-543 61-266 (297)
232 KOG4555 TPR repeat-containing 96.8 0.016 3.4E-07 54.7 11.1 53 300-352 54-106 (175)
233 KOG1585 Protein required for f 96.7 0.2 4.4E-06 52.6 19.7 136 297-463 79-219 (308)
234 PF13512 TPR_18: Tetratricopep 96.7 0.037 7.9E-07 54.0 13.3 105 360-468 12-133 (142)
235 KOG1585 Protein required for f 96.7 0.12 2.6E-06 54.3 17.5 153 289-460 91-253 (308)
236 KOG1130 Predicted G-alpha GTPa 96.6 0.25 5.5E-06 55.3 20.6 87 396-483 278-370 (639)
237 PF02184 HAT: HAT (Half-A-TPR) 96.6 0.0026 5.6E-08 44.6 3.4 28 89-117 3-30 (32)
238 COG4785 NlpI Lipoprotein NlpI, 96.6 0.14 2.9E-06 52.9 16.9 170 284-464 94-267 (297)
239 KOG2796 Uncharacterized conser 96.5 1.2 2.6E-05 47.5 23.8 136 360-499 179-314 (366)
240 KOG1941 Acetylcholine receptor 96.5 0.094 2E-06 57.7 16.1 191 295-486 128-349 (518)
241 KOG1920 IkappaB kinase complex 96.5 3.1 6.7E-05 53.0 30.9 57 291-350 910-966 (1265)
242 KOG2796 Uncharacterized conser 96.5 0.14 3E-06 54.3 16.6 135 327-468 181-320 (366)
243 COG3898 Uncharacterized membra 96.4 2.3 4.9E-05 47.9 31.7 219 301-543 166-392 (531)
244 PF13431 TPR_17: Tetratricopep 96.4 0.0025 5.4E-08 46.2 2.6 33 311-343 1-33 (34)
245 PF02184 HAT: HAT (Half-A-TPR) 96.4 0.0043 9.3E-08 43.5 3.4 30 54-84 2-31 (32)
246 KOG0890 Protein kinase of the 96.3 8.3 0.00018 52.9 37.0 246 286-546 1667-1960(2382)
247 PF03704 BTAD: Bacterial trans 96.3 0.31 6.8E-06 48.3 17.7 106 300-425 17-128 (146)
248 KOG0530 Protein farnesyltransf 96.1 0.97 2.1E-05 48.2 20.2 188 302-498 56-251 (318)
249 KOG4642 Chaperone-dependent E3 96.0 0.077 1.7E-06 55.5 11.6 99 53-153 24-125 (284)
250 PF13281 DUF4071: Domain of un 96.0 0.56 1.2E-05 53.6 19.6 186 322-546 140-337 (374)
251 PF13431 TPR_17: Tetratricopep 95.9 0.0087 1.9E-07 43.3 3.3 32 62-93 2-33 (34)
252 KOG3081 Vesicle coat complex C 95.9 0.46 9.9E-06 50.8 17.1 162 291-468 109-276 (299)
253 COG4105 ComL DNA uptake lipopr 95.9 1.1 2.3E-05 48.2 19.9 182 288-495 33-231 (254)
254 PF07719 TPR_2: Tetratricopept 95.8 0.018 4E-07 41.2 4.8 34 433-467 1-34 (34)
255 PF06552 TOM20_plant: Plant sp 95.7 0.086 1.9E-06 53.2 10.6 88 23-110 11-117 (186)
256 PF13512 TPR_18: Tetratricopep 95.7 0.12 2.6E-06 50.5 11.3 73 393-469 10-82 (142)
257 KOG2300 Uncharacterized conser 95.7 5.6 0.00012 46.1 40.6 187 296-484 330-541 (629)
258 PF10300 DUF3808: Protein of u 95.5 0.73 1.6E-05 55.2 19.2 152 302-462 201-375 (468)
259 KOG4642 Chaperone-dependent E3 95.4 0.1 2.2E-06 54.6 10.2 82 339-422 26-107 (284)
260 COG3118 Thioredoxin domain-con 95.4 1.3 2.8E-05 48.4 18.6 146 330-484 141-288 (304)
261 KOG2041 WD40 repeat protein [G 95.3 9.4 0.0002 46.0 26.1 25 291-315 854-878 (1189)
262 PF00515 TPR_1: Tetratricopept 95.3 0.038 8.2E-07 39.7 4.7 34 433-467 1-34 (34)
263 KOG2610 Uncharacterized conser 95.2 0.23 5E-06 54.3 12.2 156 302-461 116-274 (491)
264 KOG2471 TPR repeat-containing 95.0 0.15 3.2E-06 58.3 10.5 123 356-479 238-380 (696)
265 KOG2053 Mitochondrial inherita 94.9 14 0.00031 46.1 47.8 156 368-539 446-604 (932)
266 PF04910 Tcf25: Transcriptiona 94.9 1.8 3.9E-05 49.9 19.4 158 304-468 25-227 (360)
267 COG2976 Uncharacterized protei 94.8 3.3 7.1E-05 42.6 18.6 113 308-422 71-188 (207)
268 COG4105 ComL DNA uptake lipopr 94.7 1.6 3.5E-05 46.8 17.0 153 392-548 33-201 (254)
269 KOG0889 Histone acetyltransfer 94.5 36 0.00079 48.9 36.2 241 283-547 2685-2958(3550)
270 PF10300 DUF3808: Protein of u 94.5 0.87 1.9E-05 54.5 16.2 122 302-423 246-377 (468)
271 KOG2610 Uncharacterized conser 94.2 3 6.5E-05 46.0 17.5 51 403-460 185-235 (491)
272 PF07719 TPR_2: Tetratricopept 94.0 0.13 2.9E-06 36.6 5.0 32 74-105 2-33 (34)
273 PF10602 RPN7: 26S proteasome 93.9 2.1 4.6E-05 44.0 15.5 98 288-385 35-140 (177)
274 PF10345 Cohesin_load: Cohesin 93.9 23 0.0005 44.2 46.5 115 57-175 39-169 (608)
275 PF13181 TPR_8: Tetratricopept 93.8 0.099 2.1E-06 37.4 4.0 32 434-466 2-33 (34)
276 KOG0376 Serine-threonine phosp 93.8 0.083 1.8E-06 60.7 5.4 98 371-476 17-114 (476)
277 COG2976 Uncharacterized protei 93.8 1.8 4E-05 44.4 14.2 97 363-467 94-192 (207)
278 KOG4507 Uncharacterized conser 93.6 10 0.00022 45.0 21.3 106 365-478 613-720 (886)
279 PF08631 SPO22: Meiosis protei 93.5 15 0.00033 40.8 25.7 231 301-542 5-274 (278)
280 KOG1538 Uncharacterized conser 93.4 4 8.6E-05 48.6 17.9 50 401-460 781-830 (1081)
281 KOG0530 Protein farnesyltransf 93.4 6.2 0.00013 42.4 17.7 153 284-444 72-232 (318)
282 COG3118 Thioredoxin domain-con 93.3 2 4.4E-05 46.9 14.6 120 301-422 146-265 (304)
283 PF13174 TPR_6: Tetratricopept 93.2 0.14 3E-06 36.2 4.0 32 435-467 2-33 (33)
284 KOG1308 Hsp70-interacting prot 93.0 0.075 1.6E-06 58.4 3.3 50 303-352 128-177 (377)
285 KOG2300 Uncharacterized conser 92.9 23 0.0005 41.3 45.7 192 334-539 334-552 (629)
286 KOG1308 Hsp70-interacting prot 92.8 0.091 2E-06 57.8 3.5 85 336-422 127-211 (377)
287 PF00515 TPR_1: Tetratricopept 92.6 0.22 4.7E-06 35.7 4.3 32 74-105 2-33 (34)
288 PF10602 RPN7: 26S proteasome 92.5 1.2 2.6E-05 45.9 11.2 106 359-465 37-144 (177)
289 KOG0545 Aryl-hydrocarbon recep 92.5 1.7 3.7E-05 45.9 12.1 73 393-472 230-302 (329)
290 KOG3824 Huntingtin interacting 92.2 0.41 8.8E-06 51.8 7.3 55 406-467 129-183 (472)
291 KOG0376 Serine-threonine phosp 92.1 0.22 4.7E-06 57.4 5.6 93 301-395 16-108 (476)
292 COG1747 Uncharacterized N-term 92.1 4.8 0.0001 46.9 15.9 130 291-422 101-234 (711)
293 KOG2581 26S proteasome regulat 92.0 22 0.00048 40.6 20.6 167 359-548 170-351 (493)
294 KOG1972 Uncharacterized conser 91.9 28 0.00062 43.0 22.7 133 284-422 717-865 (913)
295 PRK12798 chemotaxis protein; R 91.9 29 0.00063 40.1 22.0 194 333-547 91-290 (421)
296 KOG2422 Uncharacterized conser 91.6 11 0.00024 44.7 18.5 160 304-466 253-451 (665)
297 KOG0889 Histone acetyltransfer 91.5 92 0.002 45.2 36.9 131 359-499 2813-2953(3550)
298 KOG3824 Huntingtin interacting 91.1 0.6 1.3E-05 50.5 7.2 81 31-113 107-190 (472)
299 COG1747 Uncharacterized N-term 91.1 31 0.00067 40.6 20.9 175 295-480 72-251 (711)
300 PF04910 Tcf25: Transcriptiona 91.0 7.9 0.00017 44.7 16.9 157 389-548 36-227 (360)
301 KOG2041 WD40 repeat protein [G 90.9 46 0.00099 40.5 23.3 36 313-348 842-877 (1189)
302 PF13174 TPR_6: Tetratricopept 90.6 0.58 1.3E-05 32.9 4.7 32 39-72 2-33 (33)
303 KOG1464 COP9 signalosome, subu 90.6 16 0.00035 39.2 16.9 187 289-482 65-286 (440)
304 KOG0551 Hsp90 co-chaperone CNS 90.5 1.1 2.3E-05 49.5 8.5 95 366-467 89-186 (390)
305 KOG0545 Aryl-hydrocarbon recep 90.5 3.2 7E-05 43.9 11.6 107 290-422 179-293 (329)
306 PF08631 SPO22: Meiosis protei 90.5 22 0.00048 39.5 19.5 62 435-499 86-149 (278)
307 PF00244 14-3-3: 14-3-3 protei 90.3 8.5 0.00019 41.6 15.4 53 409-462 142-197 (236)
308 PF13181 TPR_8: Tetratricopept 89.9 0.69 1.5E-05 32.9 4.6 31 74-104 2-32 (34)
309 COG5187 RPN7 26S proteasome re 89.9 13 0.00027 40.5 15.5 75 410-485 92-169 (412)
310 PF13176 TPR_7: Tetratricopept 89.8 0.65 1.4E-05 33.9 4.5 28 395-422 1-28 (36)
311 COG3629 DnrI DNA-binding trans 89.6 3.6 7.7E-05 45.3 11.8 63 74-137 154-216 (280)
312 PF09986 DUF2225: Uncharacteri 89.1 3.5 7.5E-05 43.8 11.1 31 392-422 164-194 (214)
313 KOG1538 Uncharacterized conser 89.1 28 0.00062 41.8 18.9 33 510-542 800-832 (1081)
314 PF14561 TPR_20: Tetratricopep 89.0 2.9 6.4E-05 37.8 9.0 48 23-72 8-55 (90)
315 PF12968 DUF3856: Domain of Un 88.9 21 0.00046 33.7 14.9 62 364-425 61-132 (144)
316 KOG0551 Hsp90 co-chaperone CNS 88.6 8.1 0.00018 42.9 13.4 92 330-422 88-182 (390)
317 PF09986 DUF2225: Uncharacteri 87.9 4.6 0.0001 42.9 11.1 71 394-465 119-196 (214)
318 KOG1920 IkappaB kinase complex 87.9 14 0.0003 47.5 16.5 79 303-385 887-966 (1265)
319 KOG1550 Extracellular protein 87.8 21 0.00046 43.8 18.3 147 305-464 228-394 (552)
320 smart00028 TPR Tetratricopepti 87.7 0.75 1.6E-05 31.1 3.5 32 434-466 2-33 (34)
321 PF13176 TPR_7: Tetratricopept 87.6 0.91 2E-05 33.2 4.0 28 435-463 1-28 (36)
322 PF04053 Coatomer_WDAD: Coatom 87.6 9.9 0.00021 45.1 14.7 132 302-468 274-407 (443)
323 KOG1550 Extracellular protein 87.4 26 0.00056 43.1 18.8 143 304-460 264-423 (552)
324 KOG3807 Predicted membrane pro 86.5 56 0.0012 36.3 18.1 36 580-616 443-480 (556)
325 KOG2471 TPR repeat-containing 86.0 2.8 6E-05 48.4 8.4 47 392-444 334-380 (696)
326 PF07079 DUF1347: Protein of u 85.9 78 0.0017 37.0 36.8 85 53-138 59-158 (549)
327 KOG4507 Uncharacterized conser 85.3 7.1 0.00015 46.2 11.3 116 306-422 196-312 (886)
328 KOG0529 Protein geranylgeranyl 85.3 8.6 0.00019 44.0 11.8 136 21-158 93-241 (421)
329 PF09613 HrpB1_HrpK: Bacterial 84.7 34 0.00073 34.4 14.4 55 330-385 17-71 (160)
330 PF12862 Apc5: Anaphase-promot 84.5 5.1 0.00011 36.4 8.1 60 405-465 10-72 (94)
331 COG3629 DnrI DNA-binding trans 84.3 7.6 0.00017 42.7 10.6 50 53-102 167-216 (280)
332 PF10345 Cohesin_load: Cohesin 84.2 1.2E+02 0.0026 37.8 41.3 112 23-138 41-169 (608)
333 COG2909 MalT ATP-dependent tra 84.0 1.3E+02 0.0029 38.1 22.2 117 357-475 414-542 (894)
334 COG3947 Response regulator con 83.9 10 0.00022 41.4 10.9 101 32-134 222-339 (361)
335 PF09613 HrpB1_HrpK: Bacterial 83.6 46 0.001 33.5 14.8 64 398-468 15-78 (160)
336 PF09670 Cas_Cas02710: CRISPR- 83.6 96 0.0021 36.1 20.7 130 291-423 134-271 (379)
337 PF12862 Apc5: Anaphase-promot 83.5 9.3 0.0002 34.7 9.4 59 369-427 9-75 (94)
338 COG4976 Predicted methyltransf 82.6 1.6 3.4E-05 45.8 4.2 56 366-422 3-58 (287)
339 PF14561 TPR_20: Tetratricopep 81.7 15 0.00033 33.1 9.9 65 60-140 9-73 (90)
340 PRK10941 hypothetical protein; 81.3 7.1 0.00015 43.0 9.1 56 53-108 195-250 (269)
341 PF12968 DUF3856: Domain of Un 80.9 52 0.0011 31.3 14.2 103 359-462 8-128 (144)
342 PF03154 Atrophin-1: Atrophin- 80.9 95 0.0021 39.6 19.1 96 622-724 34-136 (982)
343 COG4976 Predicted methyltransf 80.5 2.1 4.4E-05 44.9 4.2 52 301-352 7-58 (287)
344 smart00028 TPR Tetratricopepti 80.5 2.9 6.3E-05 27.9 4.0 30 75-104 3-32 (34)
345 PF04053 Coatomer_WDAD: Coatom 80.2 21 0.00045 42.4 13.1 132 291-460 297-428 (443)
346 PRK10941 hypothetical protein; 80.1 17 0.00036 40.1 11.4 64 400-470 188-251 (269)
347 PRK15180 Vi polysaccharide bio 79.8 10 0.00022 43.7 9.7 129 335-472 301-429 (831)
348 PF15297 CKAP2_C: Cytoskeleton 79.8 7.7 0.00017 43.5 8.6 85 323-422 83-169 (353)
349 KOG3807 Predicted membrane pro 79.7 1.1E+02 0.0023 34.2 16.9 82 305-388 200-305 (556)
350 PF15297 CKAP2_C: Cytoskeleton 78.7 13 0.00027 41.9 9.9 86 74-174 84-169 (353)
351 KOG1972 Uncharacterized conser 78.1 25 0.00055 43.4 12.8 97 447-548 743-870 (913)
352 PF11207 DUF2989: Protein of u 77.2 17 0.00036 38.0 9.6 78 373-454 121-198 (203)
353 TIGR03362 VI_chp_7 type VI sec 77.2 1.3E+02 0.0028 33.8 18.8 137 286-424 97-281 (301)
354 KOG1166 Mitotic checkpoint ser 77.0 30 0.00066 44.7 13.8 70 408-482 93-163 (974)
355 KOG1464 COP9 signalosome, subu 76.9 96 0.0021 33.6 15.2 47 303-349 41-91 (440)
356 KOG2066 Vacuolar assembly/sort 76.1 31 0.00066 42.7 12.7 55 296-350 363-419 (846)
357 KOG0687 26S proteasome regulat 75.9 28 0.00062 38.6 11.3 99 323-424 104-212 (393)
358 KOG0276 Vesicle coat complex C 75.3 42 0.00091 40.3 13.1 45 335-385 649-693 (794)
359 KOG0687 26S proteasome regulat 74.5 1.1E+02 0.0023 34.3 15.2 54 430-484 101-157 (393)
360 COG3947 Response regulator con 73.8 1.5E+02 0.0032 32.8 16.3 47 440-487 286-332 (361)
361 COG0790 FOG: TPR repeat, SEL1 73.7 1.5E+02 0.0033 32.8 20.9 150 303-465 55-222 (292)
362 PF11207 DUF2989: Protein of u 73.2 15 0.00034 38.2 8.2 79 333-412 116-197 (203)
363 COG5187 RPN7 26S proteasome re 72.9 1.5E+02 0.0033 32.5 15.8 103 359-466 116-224 (412)
364 COG0790 FOG: TPR repeat, SEL1 72.7 1.6E+02 0.0034 32.6 19.4 148 337-500 55-220 (292)
365 KOG2422 Uncharacterized conser 72.7 1E+02 0.0022 37.0 15.5 100 284-384 279-404 (665)
366 PF13374 TPR_10: Tetratricopep 71.7 7.7 0.00017 28.6 4.4 29 434-463 3-31 (42)
367 TIGR02561 HrpB1_HrpK type III 71.3 29 0.00063 34.3 9.2 49 336-385 23-71 (153)
368 PF13374 TPR_10: Tetratricopep 70.0 10 0.00023 27.9 4.8 30 394-423 3-32 (42)
369 PF14853 Fis1_TPR_C: Fis1 C-te 69.5 24 0.00052 28.4 6.8 30 440-470 8-37 (53)
370 COG2909 MalT ATP-dependent tra 69.5 3.2E+02 0.007 34.8 25.3 232 301-539 427-684 (894)
371 KOG3783 Uncharacterized conser 68.1 2.7E+02 0.0059 33.4 23.2 69 396-464 452-521 (546)
372 COG5159 RPN6 26S proteasome re 67.2 2E+02 0.0044 31.6 15.4 125 337-465 99-237 (421)
373 smart00299 CLH Clathrin heavy 66.4 31 0.00067 33.6 8.7 14 144-157 124-137 (140)
374 TIGR02996 rpt_mate_G_obs repea 66.3 10 0.00023 28.7 3.8 33 310-342 3-35 (42)
375 KOG1166 Mitotic checkpoint ser 66.2 1.2E+02 0.0027 39.4 15.7 118 73-193 34-162 (974)
376 KOG1839 Uncharacterized protei 65.7 79 0.0017 41.6 13.8 128 335-463 944-1086(1236)
377 KOG0529 Protein geranylgeranyl 65.2 53 0.0011 37.9 10.9 93 27-120 53-157 (421)
378 KOG0686 COP9 signalosome, subu 65.2 2.7E+02 0.0058 32.3 17.2 102 360-462 152-257 (466)
379 COG5159 RPN6 26S proteasome re 64.6 2.3E+02 0.0049 31.3 21.4 159 301-460 15-191 (421)
380 PRK13184 pknD serine/threonine 64.3 22 0.00048 45.9 8.8 103 366-470 483-588 (932)
381 PF04781 DUF627: Protein of un 64.1 37 0.00081 31.8 7.9 83 53-136 10-106 (111)
382 PF00244 14-3-3: 14-3-3 protei 64.0 95 0.0021 33.5 12.5 72 468-542 123-197 (236)
383 KOG2034 Vacuolar sorting prote 63.9 1.4E+02 0.0031 37.7 15.0 85 323-423 362-446 (911)
384 KOG3783 Uncharacterized conser 63.4 3.3E+02 0.0072 32.8 21.8 131 292-424 234-377 (546)
385 smart00101 14_3_3 14-3-3 homol 63.2 2.3E+02 0.0049 30.8 18.3 53 409-462 144-199 (244)
386 KOG2908 26S proteasome regulat 62.2 2.8E+02 0.006 31.4 16.9 92 368-462 85-182 (380)
387 PF11817 Foie-gras_1: Foie gra 61.9 39 0.00085 36.8 9.2 59 407-466 152-210 (247)
388 KOG4592 Uncharacterized conser 61.7 37 0.0008 40.6 9.1 18 782-799 55-72 (728)
389 KOG4014 Uncharacterized conser 60.8 61 0.0013 33.2 9.2 100 357-466 33-144 (248)
390 KOG2114 Vacuolar assembly/sort 60.3 3.6E+02 0.0078 34.2 17.2 36 507-543 515-550 (933)
391 KOG1463 26S proteasome regulat 60.0 1.6E+02 0.0034 33.3 13.0 102 363-465 133-240 (411)
392 PF04781 DUF627: Protein of un 60.0 65 0.0014 30.3 8.7 98 301-421 8-106 (111)
393 COG4649 Uncharacterized protei 59.5 2E+02 0.0043 29.5 12.4 123 334-462 69-195 (221)
394 PF14929 TAF1_subA: TAF RNA Po 59.5 85 0.0018 38.2 12.0 129 37-169 345-479 (547)
395 KOG0686 COP9 signalosome, subu 59.5 3.4E+02 0.0073 31.6 16.6 95 291-385 152-256 (466)
396 KOG1839 Uncharacterized protei 59.4 60 0.0013 42.7 11.2 153 307-460 956-1125(1236)
397 KOG1924 RhoA GTPase effector D 58.9 4.6E+02 0.0099 32.9 22.7 37 513-549 364-400 (1102)
398 PF07721 TPR_4: Tetratricopept 57.7 12 0.00025 25.1 2.6 25 434-459 2-26 (26)
399 PF09670 Cas_Cas02710: CRISPR- 56.9 1.5E+02 0.0032 34.5 13.3 56 330-386 138-197 (379)
400 KOG2908 26S proteasome regulat 56.9 3.4E+02 0.0073 30.8 17.9 60 402-462 84-143 (380)
401 PF04190 DUF410: Protein of un 56.2 3.1E+02 0.0067 30.1 19.5 48 412-460 69-116 (260)
402 PF07720 TPR_3: Tetratricopept 55.0 34 0.00073 25.1 4.8 32 434-466 2-35 (36)
403 PF07721 TPR_4: Tetratricopept 53.1 21 0.00046 23.8 3.3 16 365-380 8-23 (26)
404 TIGR02996 rpt_mate_G_obs repea 52.6 32 0.0007 26.2 4.4 23 98-120 7-29 (42)
405 PHA02537 M terminase endonucle 51.5 1.7E+02 0.0036 31.5 11.4 98 446-549 95-213 (230)
406 KOG2114 Vacuolar assembly/sort 51.1 3.8E+02 0.0083 34.0 15.4 29 290-318 369-397 (933)
407 PF12739 TRAPPC-Trs85: ER-Golg 51.1 2.6E+02 0.0056 33.0 14.3 161 291-465 210-401 (414)
408 cd02680 MIT_calpain7_2 MIT: do 50.9 22 0.00048 30.9 3.9 35 408-464 2-36 (75)
409 COG4259 Uncharacterized protei 50.9 1.2E+02 0.0025 27.9 8.3 69 409-483 49-117 (121)
410 COG3914 Spy Predicted O-linked 50.3 2.7E+02 0.0058 33.8 13.7 37 303-339 81-117 (620)
411 PF12144 Med12-PQL: Eukaryotic 49.6 19 0.00041 36.8 3.7 65 827-891 109-175 (204)
412 TIGR02561 HrpB1_HrpK type III 49.3 2.8E+02 0.0061 27.6 13.5 52 406-464 23-74 (153)
413 KOG2581 26S proteasome regulat 48.3 5E+02 0.011 30.2 14.9 125 393-524 169-299 (493)
414 PF14853 Fis1_TPR_C: Fis1 C-te 46.2 85 0.0018 25.3 6.3 24 368-392 11-34 (53)
415 KOG4521 Nuclear pore complex, 46.0 6.5E+02 0.014 33.3 16.5 170 362-546 924-1135(1480)
416 KOG1811 Predicted Zn2+-binding 45.9 4.1E+02 0.009 32.1 14.0 72 429-502 583-655 (1141)
417 KOG1114 Tripeptidyl peptidase 45.9 3.3E+02 0.0072 34.9 13.8 81 408-498 1211-1293(1304)
418 TIGR03504 FimV_Cterm FimV C-te 45.2 32 0.0007 26.5 3.6 25 437-462 3-27 (44)
419 COG3914 Spy Predicted O-linked 44.7 2.9E+02 0.0064 33.5 12.9 36 439-475 148-183 (620)
420 PF15015 NYD-SP12_N: Spermatog 44.3 1.9E+02 0.0041 33.6 10.7 51 366-417 236-286 (569)
421 PF12854 PPR_1: PPR repeat 43.9 41 0.00088 24.1 3.8 25 324-348 8-32 (34)
422 PF09205 DUF1955: Domain of un 42.9 1.2E+02 0.0026 29.6 7.6 54 299-352 96-149 (161)
423 TIGR03504 FimV_Cterm FimV C-te 42.7 37 0.00081 26.2 3.6 25 327-351 3-27 (44)
424 KOG4369 RTK signaling protein 42.6 22 0.00047 45.4 3.5 9 790-798 1505-1513(2131)
425 PF01535 PPR: PPR repeat; Int 42.2 36 0.00077 23.0 3.3 26 396-421 3-28 (31)
426 PRK15338 type III secretion sy 41.5 6.1E+02 0.013 29.2 14.8 82 91-174 107-196 (372)
427 KOG4369 RTK signaling protein 41.2 18 0.0004 46.0 2.6 12 619-630 1200-1211(2131)
428 cd02679 MIT_spastin MIT: domai 41.1 44 0.00095 29.4 4.2 18 446-463 20-37 (79)
429 KOG2066 Vacuolar assembly/sort 40.8 8.6E+02 0.019 30.8 29.6 59 54-115 371-431 (846)
430 KOG4814 Uncharacterized conser 40.7 5.4E+02 0.012 31.7 14.1 73 395-469 357-429 (872)
431 PF05053 Menin: Menin; InterP 38.4 3.3E+02 0.0072 33.0 11.9 67 357-423 276-348 (618)
432 PRK15490 Vi polysaccharide bio 38.3 1.9E+02 0.0042 35.4 10.4 78 371-458 21-98 (578)
433 cd02684 MIT_2 MIT: domain cont 37.7 54 0.0012 28.5 4.3 32 409-462 3-34 (75)
434 smart00299 CLH Clathrin heavy 37.6 3.8E+02 0.0082 25.8 14.4 38 300-337 18-55 (140)
435 PF13041 PPR_2: PPR repeat fam 37.5 1.2E+02 0.0025 23.6 6.0 26 76-101 6-31 (50)
436 PF12854 PPR_1: PPR repeat 37.5 61 0.0013 23.2 3.9 26 393-418 7-32 (34)
437 PF10579 Rapsyn_N: Rapsyn N-te 37.5 1.2E+02 0.0026 26.7 6.2 51 87-138 20-70 (80)
438 PF11846 DUF3366: Domain of un 37.3 97 0.0021 32.1 7.1 49 55-104 127-175 (193)
439 PF04212 MIT: MIT (microtubule 37.3 73 0.0016 26.9 5.1 17 446-462 17-33 (69)
440 PF11817 Foie-gras_1: Foie gra 37.2 2.4E+02 0.0052 30.6 10.4 44 341-384 156-204 (247)
441 KOG4318 Bicoid mRNA stability 37.1 1E+03 0.022 30.7 27.4 96 74-171 492-591 (1088)
442 KOG1938 Protein with predicted 36.0 4.8E+02 0.01 33.7 13.4 61 404-466 327-387 (960)
443 KOG0276 Vesicle coat complex C 35.9 1.6E+02 0.0034 35.8 8.8 82 323-422 614-695 (794)
444 PF01535 PPR: PPR repeat; Int 35.8 52 0.0011 22.1 3.3 26 76-101 3-28 (31)
445 KOG1811 Predicted Zn2+-binding 35.6 3.7E+02 0.008 32.5 11.6 72 389-466 583-656 (1141)
446 KOG4521 Nuclear pore complex, 34.8 1.2E+03 0.027 30.9 20.1 50 451-502 1083-1134(1480)
447 PF10516 SHNi-TPR: SHNi-TPR; 34.7 81 0.0017 23.5 4.2 30 394-423 2-31 (38)
448 KOG1310 WD40 repeat protein [G 34.6 1.1E+02 0.0023 36.5 7.1 87 375-469 391-480 (758)
449 KOG4279 Serine/threonine prote 34.5 3.9E+02 0.0085 33.3 11.8 214 294-532 206-444 (1226)
450 KOG3364 Membrane protein invol 34.5 2.2E+02 0.0047 28.0 8.0 55 53-107 49-105 (149)
451 PF05053 Menin: Menin; InterP 34.3 2.1E+02 0.0046 34.5 9.6 70 391-462 275-346 (618)
452 PF13041 PPR_2: PPR repeat fam 33.9 1.6E+02 0.0035 22.7 6.3 31 36-68 2-32 (50)
453 PF15080 DUF4547: Domain of un 33.8 4.7E+02 0.01 26.1 10.2 94 63-160 29-130 (196)
454 PF04212 MIT: MIT (microtubule 33.6 82 0.0018 26.6 4.8 17 369-385 16-32 (69)
455 PF10516 SHNi-TPR: SHNi-TPR; 33.2 65 0.0014 24.0 3.4 29 434-463 2-30 (38)
456 KOG4318 Bicoid mRNA stability 32.9 1.2E+03 0.026 30.1 32.8 98 79-178 713-813 (1088)
457 cd02683 MIT_1 MIT: domain cont 32.2 1.4E+02 0.003 26.1 6.0 17 369-385 17-33 (77)
458 PF10579 Rapsyn_N: Rapsyn N-te 32.2 1.8E+02 0.0038 25.7 6.4 39 446-484 18-56 (80)
459 PF07720 TPR_3: Tetratricopept 31.9 1.3E+02 0.0029 22.0 4.9 21 75-95 3-23 (36)
460 TIGR00756 PPR pentatricopeptid 31.8 82 0.0018 21.6 3.9 27 396-422 3-29 (35)
461 cd02680 MIT_calpain7_2 MIT: do 31.6 76 0.0017 27.6 4.2 16 370-385 18-33 (75)
462 PF11846 DUF3366: Domain of un 31.3 1.1E+02 0.0024 31.7 6.4 35 430-465 141-175 (193)
463 KOG4014 Uncharacterized conser 30.5 6.3E+02 0.014 26.2 18.3 155 284-464 32-198 (248)
464 cd02684 MIT_2 MIT: domain cont 30.4 1.9E+02 0.004 25.2 6.4 18 85-102 18-35 (75)
465 cd02683 MIT_1 MIT: domain cont 29.8 91 0.002 27.3 4.5 17 446-462 18-34 (77)
466 KOG2063 Vacuolar assembly/sort 29.5 6.2E+02 0.013 32.8 13.2 33 432-465 683-715 (877)
467 KOG2997 F-box protein FBX9 [Ge 29.4 1.2E+02 0.0025 33.9 6.0 42 409-472 16-57 (366)
468 PF10373 EST1_DNA_bind: Est1 D 29.0 1.8E+02 0.0039 31.8 8.0 59 58-116 1-59 (278)
469 KOG2561 Adaptor protein NUB1, 28.6 3.9E+02 0.0086 31.2 10.1 46 396-441 270-315 (568)
470 KOG1310 WD40 repeat protein [G 28.1 1.6E+02 0.0034 35.2 7.1 86 54-140 389-477 (758)
471 TIGR00756 PPR pentatricopeptid 27.6 1.1E+02 0.0024 20.9 4.0 26 76-101 3-28 (35)
472 smart00745 MIT Microtubule Int 27.5 1E+02 0.0022 26.6 4.5 17 446-462 20-36 (77)
473 PHA02537 M terminase endonucle 27.4 4.6E+02 0.0099 28.2 10.0 22 331-352 91-112 (230)
474 cd02677 MIT_SNX15 MIT: domain 27.2 94 0.002 27.0 4.0 34 409-464 3-36 (75)
475 cd00280 TRFH Telomeric Repeat 27.1 4.1E+02 0.0089 27.5 9.0 66 53-119 83-156 (200)
476 COG2912 Uncharacterized conser 26.2 2.9E+02 0.0063 30.4 8.4 83 24-108 164-250 (269)
477 COG4941 Predicted RNA polymera 26.0 9.7E+02 0.021 27.3 12.2 124 408-547 271-398 (415)
478 cd02681 MIT_calpain7_1 MIT: do 25.8 4.5E+02 0.0098 23.0 8.1 17 369-385 17-33 (76)
479 cd02678 MIT_VPS4 MIT: domain c 25.7 1.2E+02 0.0025 26.3 4.4 17 446-462 18-34 (75)
480 KOG1463 26S proteasome regulat 25.5 1E+03 0.023 27.1 22.3 127 284-424 103-240 (411)
481 PF13929 mRNA_stabil: mRNA sta 25.4 4.2E+02 0.009 29.5 9.4 64 430-497 199-264 (292)
482 KOG2758 Translation initiation 25.4 1E+03 0.022 26.9 23.5 68 284-352 124-196 (432)
483 PF13812 PPR_3: Pentatricopept 25.4 1.5E+02 0.0033 20.3 4.3 28 395-422 3-30 (34)
484 cd02682 MIT_AAA_Arch MIT: doma 25.3 3.2E+02 0.007 23.8 6.9 64 340-420 4-70 (75)
485 PF12583 TPPII_N: Tripeptidyl 25.3 2.5E+02 0.0054 27.2 6.7 30 54-83 91-120 (139)
486 PRK15338 type III secretion sy 25.1 1.1E+03 0.024 27.2 17.1 45 308-352 108-152 (372)
487 COG4649 Uncharacterized protei 24.4 8E+02 0.017 25.3 14.8 119 302-422 71-196 (221)
488 COG4455 ImpE Protein of avirul 23.7 6.3E+02 0.014 27.0 9.8 64 53-116 15-78 (273)
489 KOG2062 26S proteasome regulat 23.6 1.6E+03 0.034 28.5 17.7 41 305-350 127-167 (929)
490 KOG2690 Uncharacterized conser 23.6 1.9E+02 0.0042 32.1 6.4 86 266-351 144-237 (331)
491 TIGR02710 CRISPR-associated pr 22.4 1.3E+03 0.027 27.0 13.3 131 327-463 134-275 (380)
492 PF08626 TRAPPC9-Trs120: Trans 22.0 2.1E+03 0.046 29.4 19.7 193 329-542 248-551 (1185)
493 PF10373 EST1_DNA_bind: Est1 D 22.0 1.5E+02 0.0033 32.3 5.7 62 308-370 1-62 (278)
494 cd02677 MIT_SNX15 MIT: domain 21.5 4.3E+02 0.0094 22.9 7.1 67 396-465 9-75 (75)
495 KOG1497 COP9 signalosome, subu 21.3 1.2E+03 0.026 26.3 17.5 174 287-463 20-213 (399)
496 PRK15490 Vi polysaccharide bio 21.3 1E+03 0.022 29.3 12.5 120 286-418 5-124 (578)
497 PF12921 ATP13: Mitochondrial 21.2 7.4E+02 0.016 23.8 11.0 103 392-495 1-115 (126)
498 smart00745 MIT Microtubule Int 21.1 1.7E+02 0.0036 25.2 4.6 34 339-388 5-38 (77)
499 KOG0292 Vesicle coat complex C 20.6 2.6E+02 0.0057 35.5 7.3 100 334-460 654-753 (1202)
500 KOG0260 RNA polymerase II, lar 20.6 1.3E+03 0.028 30.8 13.3 129 712-852 1461-1600(1605)
No 1
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=100.00 E-value=1.2e-68 Score=595.11 Aligned_cols=575 Identities=16% Similarity=0.237 Sum_probs=471.0
Q ss_pred CCCCCcchHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh--------C
Q 001486 16 NSPVGFGKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARL--------C 87 (1070)
Q Consensus 16 ~~~~~~~~~~le~~l~~nP~s~~~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P~s~~lW~~ya~~e~~~--------~ 87 (1070)
+..+..++..||+.|.+||+|+++|.+||++... ...++.+.+|||||+.+|+|+++|+.|++..... .
T Consensus 6 dl~~~~EDvpfEeEilRnp~svk~W~RYIe~k~~---sp~k~~~~lYERal~~lp~sykiW~~YL~~R~~~vk~~~~T~~ 82 (835)
T KOG2047|consen 6 DLNFENEDVPFEEEILRNPFSVKCWLRYIEHKAG---SPDKQRNLLYERALKELPGSYKIWYDYLKARRAQVKHLCPTDP 82 (835)
T ss_pred cccccccccchHHHHHcCchhHHHHHHHHHHHcc---CChHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHhhccCCCCh
Confidence 3334445679999999999999999999998765 5788899999999999999999999999876544 2
Q ss_pred CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHcccHHHHHHH
Q 001486 88 SIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQI 167 (1070)
Q Consensus 88 ~~e~A~~lferAL~~~P~s~~lW~~y~~~~~~~~~~~~~ar~vferAL~~~p~~~~s~~lW~~yi~fe~~~~~~~~a~~i 167 (1070)
-|+.+..+|+|||.++++++.||+.|+.|++++ ++++..|++|++||+++|... +.+||..|++|..+++-.+.+.++
T Consensus 83 ~~~~vn~c~er~lv~mHkmpRIwl~Ylq~l~~Q-~~iT~tR~tfdrALraLpvtq-H~rIW~lyl~Fv~~~~lPets~rv 160 (835)
T KOG2047|consen 83 AYESVNNCFERCLVFMHKMPRIWLDYLQFLIKQ-GLITRTRRTFDRALRALPVTQ-HDRIWDLYLKFVESHGLPETSIRV 160 (835)
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhc-chHHHHHHHHHHHHHhCchHh-hccchHHHHHHHHhCCChHHHHHH
Confidence 378999999999999999999999999999999 999999999999999999987 589999999999999999999999
Q ss_pred HHHHHccCCcCHHHHHHHHHHHHHHHHHHhh------------hcchhh-HHH------------------HHHHhhcCC
Q 001486 168 FVQTLRFPSKKLHHYYDSFKKLAGAWKEELE------------CESDSA-MEF------------------QSELVLEGE 216 (1070)
Q Consensus 168 y~raL~~p~~~~~~~~~~~~~~~~~~~eal~------------~~~~~~-~~~------------------~~~~~~~~~ 216 (1070)
|+|+|++.+...+++. .|....+.++++.. ++++++ ... ..++++++.
T Consensus 161 yrRYLk~~P~~~eeyi-e~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~g 239 (835)
T KOG2047|consen 161 YRRYLKVAPEAREEYI-EYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGG 239 (835)
T ss_pred HHHHHhcCHHHHHHHH-HHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhh
Confidence 9999997666544443 34444444444311 111111 111 122455555
Q ss_pred ccccccc-hhhhHHHhhhcCcchhHHHHHHHHHHHH-------HHHHHHHHH-------------------------HHH
Q 001486 217 VPAYYKD-DETSSVIKDLLDPSVDLVRSKAIQKYRF-------IGEQIYKEA-------------------------SQL 263 (1070)
Q Consensus 217 l~~~~~~-~e~~~~i~~~~~~~~~~~~a~~~~~~~~-------~~~~~y~~a-------------------------~~~ 263 (1070)
+..+.+. -.+|+.+.++.-+++.+++++++++..+ .+.++|+.- .++
T Consensus 240 i~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl 319 (835)
T KOG2047|consen 240 IRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDL 319 (835)
T ss_pred cccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhH
Confidence 5433222 2456667777778999999998877432 133444310 011
Q ss_pred HHHHHHHHHhhcc-cCCCCC---CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc------CCCCHHHHHHHHHHH
Q 001486 264 DEKINCFENLIRR-PYFHVK---PLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIP------CADYPEFWMRYVDFM 333 (1070)
Q Consensus 264 ~~~~~~fE~ai~~-~~~~~~---~~~p~~~~~W~~yi~~~~~~g~~~~a~~~yerAL~~------~p~~~~lW~~ya~~l 333 (1070)
.-....||..+.+ +.+.+. ..+|++++.|++.+.++ .|+..+.+.+|.+|+.. .+....+|..||+||
T Consensus 320 ~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~--e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklY 397 (835)
T KOG2047|consen 320 ELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLY--EGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLY 397 (835)
T ss_pred HHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhh--cCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHH
Confidence 2234567777643 333333 27999999999999998 68899999999999963 355679999999999
Q ss_pred HhhCChhHHHHHHHHHHHHHhh---hchHHHHHHHHHHHHhCCHHHHHHHHHHHhhccC------------------hhh
Q 001486 334 ESKGGREIASYALDRATQIFLK---RLPVIHLFNARYKEQIGDTSAARAAFPESYIDSD------------------SRF 392 (1070)
Q Consensus 334 ~~~g~~e~A~~il~rAl~~~~~---~~p~i~~~~a~~e~~~g~~~eA~~~~~~al~~~~------------------p~~ 392 (1070)
+..|+++.||.+|++|+.+..+ ++..+|+.||.+|.++.+++.|++++++|+ .+. ..+
T Consensus 398 e~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~-~vP~~~~~~~yd~~~pvQ~rlhrS 476 (835)
T KOG2047|consen 398 ENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRAT-HVPTNPELEYYDNSEPVQARLHRS 476 (835)
T ss_pred HhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhh-cCCCchhhhhhcCCCcHHHHHHHh
Confidence 9999999999999999997544 446899999999999999999999999996 221 145
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhh--CCCcHHH
Q 001486 393 IEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKH--VPNCKLL 470 (1070)
Q Consensus 393 ~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~g~~e~Ar~iyekaL~~--~P~~~~l 470 (1070)
+++|..|+++++..|.++.++++|++.|++ ...+|.+.++||.+++ .+..+++|+++||||+.+ +|+..++
T Consensus 477 lkiWs~y~DleEs~gtfestk~vYdriidL------riaTPqii~NyAmfLE-eh~yfeesFk~YErgI~LFk~p~v~di 549 (835)
T KOG2047|consen 477 LKIWSMYADLEESLGTFESTKAVYDRIIDL------RIATPQIIINYAMFLE-EHKYFEESFKAYERGISLFKWPNVYDI 549 (835)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHH------hcCCHHHHHHHHHHHH-hhHHHHHHHHHHHcCCccCCCccHHHH
Confidence 789999999999999999999999999999 6899999999999998 999999999999999997 5678899
Q ss_pred HHHHH-HHHHHcCCCcchhHHHHHHHHHhccCCcccccCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcc
Q 001486 471 LEELI-KFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQHIKLFPHTVR 549 (1070)
Q Consensus 471 w~~y~-~~e~~~g~~~~~~~ar~l~ekAl~~~~~~s~~l~~~~~~~l~~~~~~~e~~~G~~~~a~~~~~ra~~~~p~~~~ 549 (1070)
|..|+ +|..++|+.+ .+++|.+||+||. .||+++.+.||.+|.+||+++|...+++++|+||...++...+
T Consensus 550 W~tYLtkfi~rygg~k-lEraRdLFEqaL~-------~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~ 621 (835)
T KOG2047|consen 550 WNTYLTKFIKRYGGTK-LERARDLFEQALD-------GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQR 621 (835)
T ss_pred HHHHHHHHHHHhcCCC-HHHHHHHHHHHHh-------cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHH
Confidence 99999 6777777764 7899999999996 6889999999999999999999999999999999999999999
Q ss_pred ccccCc-ccchhhhhhh--hhccchhhhhcCC-cccccccccccccccccCCC------CCcCCCccCCCCCCCCC
Q 001486 550 TAYECP-GRETKSLRAF--IRGKRESNVASLP-QPFESEHLMPSASQDKKFSP------PEKSDSESGDDATSLPS 615 (1070)
Q Consensus 550 ~~~~~~-~~~~~~~~~~--~~~~~~~~i~~lp-~~~r~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~ 615 (1070)
+.+|+. ++|.++..++ ++..++++|..|| ...|.||||||++|+ |||+ ||+|||++||||++-..
T Consensus 622 l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEt-klGEidRARaIya~~sq~~dPr~~~~f 696 (835)
T KOG2047|consen 622 LDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLET-KLGEIDRARAIYAHGSQICDPRVTTEF 696 (835)
T ss_pred HHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhh-hhhhHHHHHHHHHhhhhcCCCcCChHH
Confidence 888885 4555555554 5666688899999 999999999999999 5994 99999999999999433
No 2
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=100.00 E-value=2.7e-50 Score=448.72 Aligned_cols=489 Identities=16% Similarity=0.225 Sum_probs=410.5
Q ss_pred chHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 001486 22 GKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQ 101 (1070)
Q Consensus 22 ~~~~le~~l~~nP~s~~~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P~s~~lW~~ya~~e~~~~~~e~A~~lferAL~ 101 (1070)
.......++..+|.|+.+|+..++ ++ .+.....+|+++||+.+|+|+.+|+..++++ +.++|+.+++||++
T Consensus 334 aK~vvA~Avr~~P~Sv~lW~kA~d-LE----~~~~~K~RVlRKALe~iP~sv~LWKaAVelE----~~~darilL~rAve 404 (913)
T KOG0495|consen 334 AKTVVANAVRFLPTSVRLWLKAAD-LE----SDTKNKKRVLRKALEHIPRSVRLWKAAVELE----EPEDARILLERAVE 404 (913)
T ss_pred HHHHHHHHHHhCCCChhhhhhHHh-hh----hHHHHHHHHHHHHHHhCCchHHHHHHHHhcc----ChHHHHHHHHHHHH
Confidence 345678899999999999999999 55 4677888999999999999999999999987 45679999999999
Q ss_pred hcCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHcccHHHHHHHHHHHHc-cCCcCHH
Q 001486 102 SATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLR-FPSKKLH 180 (1070)
Q Consensus 102 ~~P~s~~lW~~y~~~~~~~~~~~~~ar~vferAL~~~p~~~~s~~lW~~yi~fe~~~~~~~~a~~iy~raL~-~p~~~~~ 180 (1070)
+||.+++||+.|+++ ..|+.|++++++|.+.+|.+ ..||+...++|+..|+.+.+.+|..|++. +-....
T Consensus 405 ccp~s~dLwlAlarL-----etYenAkkvLNkaRe~iptd---~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv- 475 (913)
T KOG0495|consen 405 CCPQSMDLWLALARL-----ETYENAKKVLNKAREIIPTD---REIWITAAKLEEANGNVDMVEKIIDRGLSELQANGV- 475 (913)
T ss_pred hccchHHHHHHHHHH-----HHHHHHHHHHHHHHhhCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcce-
Confidence 999999999999999 67899999999999999984 57999999999999999999999999975 211111
Q ss_pred HHHHHHHHHHHHHHHHhhhcchhhHHHHHHHhhcCCccccccchhhhHHHhhhcCcchhHHHHHHHHHHHHHHHHHHHHH
Q 001486 181 HYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEA 260 (1070)
Q Consensus 181 ~~~~~~~~~~~~~~eal~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~i~~~~~~~~~~~~a~~~~~~~~~~~~~y~~a 260 (1070)
-.....|+.+ +..|+..+ ....|.+++...++...++.+... .|++++..+++-.
T Consensus 476 --~i~rdqWl~e---Ae~~e~ag-sv~TcQAIi~avigigvEeed~~~---tw~~da~~~~k~~---------------- 530 (913)
T KOG0495|consen 476 --EINRDQWLKE---AEACEDAG-SVITCQAIIRAVIGIGVEEEDRKS---TWLDDAQSCEKRP---------------- 530 (913)
T ss_pred --eecHHHHHHH---HHHHhhcC-ChhhHHHHHHHHHhhccccchhHh---HHhhhHHHHHhcc----------------
Confidence 1123344433 33444332 234456666555554444443332 3444332222111
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhCChh
Q 001486 261 SQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGRE 340 (1070)
Q Consensus 261 ~~~~~~~~~fE~ai~~~~~~~~~~~p~~~~~W~~yi~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e 340 (1070)
.....+..|..+|. ..|.+..+|...+.|++.+|..+....++++|+..||+.+.+|++|++.++..|++-
T Consensus 531 -~~~carAVya~alq--------vfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~ 601 (913)
T KOG0495|consen 531 -AIECARAVYAHALQ--------VFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVP 601 (913)
T ss_pred -hHHHHHHHHHHHHh--------hccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcH
Confidence 11123334444443 567778899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhchHHHHHHHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001486 341 IASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEAL 420 (1070)
Q Consensus 341 ~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~eA~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~vyekal 420 (1070)
.|+.++..|+.. .|+...||++...+|.++..+++||.+|.++.. ...+.++|++++.+++.+++.++|+.++++||
T Consensus 602 ~ar~il~~af~~-~pnseeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~l 678 (913)
T KOG0495|consen 602 AARVILDQAFEA-NPNSEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEALRLLEEAL 678 (913)
T ss_pred HHHHHHHHHHHh-CCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHH
Confidence 999999999997 777889999999999999999999999999973 45678999999999999999999999999999
Q ss_pred HHHHhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCCcchhHHHHHHHHHhcc
Q 001486 421 ETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLLLEELIKFTMVHGGRSHISIVDAVISNALYS 500 (1070)
Q Consensus 421 ~~~~~~~~~~~~~~l~i~~A~~~~~~~g~~e~Ar~iyekaL~~~P~~~~lw~~y~~~e~~~g~~~~~~~ar~l~ekAl~~ 500 (1070)
+. +|.+.++|+.+|.+++ ..++++.||+.|..|+++||+++.+|+.+++++.+.|...+ ||.+|++++.+
T Consensus 679 k~------fp~f~Kl~lmlGQi~e-~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~r---AR~ildrarlk 748 (913)
T KOG0495|consen 679 KS------FPDFHKLWLMLGQIEE-QMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVR---ARSILDRARLK 748 (913)
T ss_pred Hh------CCchHHHHHHHhHHHH-HHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhh---HHHHHHHHHhc
Confidence 99 6999999999999998 99999999999999999999999999999999999986554 78999999998
Q ss_pred CCcccccCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcc------ccccCcccchhhhhhhhhccchhh-
Q 001486 501 RPDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQHIKLFPHTVR------TAYECPGRETKSLRAFIRGKRESN- 573 (1070)
Q Consensus 501 ~~~~s~~l~~~~~~~l~~~~~~~e~~~G~~~~a~~~~~ra~~~~p~~~~------~~~~~~~~~~~~~~~~~~~~~~~~- 573 (1070)
+|+ ...||...+++|.+.|+.+.|..++.+|++.||.++. +++.++.+|+++.+++.+|++++-
T Consensus 749 NPk---------~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphV 819 (913)
T KOG0495|consen 749 NPK---------NALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHV 819 (913)
T ss_pred CCC---------cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchh
Confidence 873 3689999999999999999999999999999999998 566789999999999999999886
Q ss_pred hhcCCcccccc
Q 001486 574 VASLPQPFESE 584 (1070)
Q Consensus 574 i~~lp~~~r~~ 584 (1070)
+.++.+.||+.
T Consensus 820 llaia~lfw~e 830 (913)
T KOG0495|consen 820 LLAIAKLFWSE 830 (913)
T ss_pred HHHHHHHHHHH
Confidence 55677888854
No 3
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=100.00 E-value=3.3e-45 Score=402.59 Aligned_cols=456 Identities=20% Similarity=0.317 Sum_probs=392.5
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcC
Q 001486 25 GLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSAT 104 (1070)
Q Consensus 25 ~le~~l~~nP~s~~~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P~s~~lW~~ya~~e~~~~~~e~A~~lferAL~~~P 104 (1070)
..++.|+.||+|++.|..+|+.+.. ..++++|..||+++..||.++.+|+.|++.+...++|+.+.++|.|||...
T Consensus 8 ~~~~rie~nP~di~sw~~lire~qt---~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv- 83 (656)
T KOG1914|consen 8 NPRERIEENPYDIDSWSQLIREAQT---QPIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV- 83 (656)
T ss_pred CHHHHHhcCCccHHHHHHHHHHHcc---CCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-
Confidence 3589999999999999999998876 589999999999999999999999999999999999999999999999984
Q ss_pred CCHHHHHHHHHHHHhhCCCh----hHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHH---------cccHHHHHHHHHHH
Q 001486 105 YSVDVWFHYCSLSMSTFEDP----NDVRRLFKRALSFVGKDYLCHTMWDKYIEFEIS---------QQRWSSLAQIFVQT 171 (1070)
Q Consensus 105 ~s~~lW~~y~~~~~~~~~~~----~~ar~vferAL~~~p~~~~s~~lW~~yi~fe~~---------~~~~~~a~~iy~ra 171 (1070)
.+++||..|+.|+.+..++. +.....|+.|+..+|.+..+..||..|+.|++. ..+++.+|++|.|+
T Consensus 84 LnlDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqra 163 (656)
T KOG1914|consen 84 LNLDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRA 163 (656)
T ss_pred hhHhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHH
Confidence 68999999999999886554 445678999999999999999999999999975 34678999999999
Q ss_pred HccCCcCHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHhhcCCccccccchhhhHHHhhhcCcchhHHHHHHHHHHHH
Q 001486 172 LRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRF 251 (1070)
Q Consensus 172 L~~p~~~~~~~~~~~~~~~~~~~eal~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~i~~~~~~~~~~~~a~~~~~~~~ 251 (1070)
|..|+.+++.+|..|..|...++.+++ +.++.
T Consensus 164 l~tPm~nlEkLW~DY~~fE~~IN~~ta-----------rK~i~------------------------------------- 195 (656)
T KOG1914|consen 164 LVTPMHNLEKLWKDYEAFEQEINIITA-----------RKFIG------------------------------------- 195 (656)
T ss_pred hcCccccHHHHHHHHHHHHHHHHHHHH-----------HHHHH-------------------------------------
Confidence 999999999999999999988764332 11110
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCCCCCC----CChHHHHHHHHHHHHHHHcCC--------HHHHHHHHHHHhccC
Q 001486 252 IGEQIYKEASQLDEKINCFENLIRRPYFHVKP----LDDIQLKNWHDYLSFAEKQGD--------FDWVVKLYERCLIPC 319 (1070)
Q Consensus 252 ~~~~~y~~a~~~~~~~~~fE~ai~~~~~~~~~----~~p~~~~~W~~yi~~~~~~g~--------~~~a~~~yerAL~~~ 319 (1070)
.+...|..|+.+++.+...-+++++....+.+ ..-..+++|+++|.|+++++- ..++..+|+.||...
T Consensus 196 e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l 275 (656)
T KOG1914|consen 196 ERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYL 275 (656)
T ss_pred hhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHH
Confidence 12233777777777777777777664333322 234677999999999987752 358999999999999
Q ss_pred CCCHHHHHHHHHHHHhhCC--------------hhHHHHHHHHHHHHHhhhchHHHHHHHHHHHHhCC---HHHHHHHHH
Q 001486 320 ADYPEFWMRYVDFMESKGG--------------REIASYALDRATQIFLKRLPVIHLFNARYKEQIGD---TSAARAAFP 382 (1070)
Q Consensus 320 p~~~~lW~~ya~~l~~~g~--------------~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~---~~eA~~~~~ 382 (1070)
+.++++|+.|+.|+...++ .++|+++|+|++....+.+..+++.++.+++..-+ .+..-..+.
T Consensus 276 ~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~ 355 (656)
T KOG1914|consen 276 GYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYN 355 (656)
T ss_pred hcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHH
Confidence 9999999999999999887 58999999999998777777899999999877555 677777888
Q ss_pred HHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Q 001486 383 ESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIK 462 (1070)
Q Consensus 383 ~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~g~~e~Ar~iyekaL~ 462 (1070)
+++.....+..-+|+.++++-++...++.||.+|.+|.+. .....++|+..|.++++..+|.+.|.+||+-||+
T Consensus 356 ~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~------~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLk 429 (656)
T KOG1914|consen 356 KLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKARED------KRTRHHVFVAAALMEYYCSKDKETAFRIFELGLK 429 (656)
T ss_pred HHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhc------cCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHH
Confidence 8874444445557999999999999999999999999987 4455699999999999899999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHcCCCcchhHHHHHHHHHhccCCcccccCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 001486 463 HVPNCKLLLEELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQHIK 542 (1070)
Q Consensus 463 ~~P~~~~lw~~y~~~e~~~g~~~~~~~ar~l~ekAl~~~~~~s~~l~~~~~~~l~~~~~~~e~~~G~~~~a~~~~~ra~~ 542 (1070)
++++++.+-..|++|+...|+..+ +|.+||+++. .+++++....||..+++||..+|+++.+.++.+|...
T Consensus 430 kf~d~p~yv~~YldfL~~lNdd~N---~R~LFEr~l~------s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 430 KFGDSPEYVLKYLDFLSHLNDDNN---ARALFERVLT------SVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred hcCCChHHHHHHHHHHHHhCcchh---HHHHHHHHHh------ccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 999999999999999999999887 6799999996 2688899999999999999999999999999999999
Q ss_pred hCCCC
Q 001486 543 LFPHT 547 (1070)
Q Consensus 543 ~~p~~ 547 (1070)
.+|..
T Consensus 501 af~~~ 505 (656)
T KOG1914|consen 501 AFPAD 505 (656)
T ss_pred hcchh
Confidence 99954
No 4
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=100.00 E-value=3.6e-43 Score=396.92 Aligned_cols=513 Identities=36% Similarity=0.649 Sum_probs=422.2
Q ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 001486 23 KQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQS 102 (1070)
Q Consensus 23 ~~~le~~l~~nP~s~~~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P~s~~lW~~ya~~e~~~~~~e~A~~lferAL~~ 102 (1070)
...+.+.+..+--+.++|..++...... .+++.+|.+|..+|..+|.++++|++|+.++.+.|..+.+.++|+|||..
T Consensus 31 ~~~~we~~~~~~~~f~~wt~li~~~~~~--~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a 108 (577)
T KOG1258|consen 31 SLDYWEILSNDSLDFDAWTTLIQENDSI--EDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA 108 (577)
T ss_pred hhhHhhccccchhcccchHHHHhccCch--hHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 3457777777777777887777654443 67789999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHcccHHHHHHHHHHHHccCCcCHHHH
Q 001486 103 ATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHY 182 (1070)
Q Consensus 103 ~P~s~~lW~~y~~~~~~~~~~~~~ar~vferAL~~~p~~~~s~~lW~~yi~fe~~~~~~~~a~~iy~raL~~p~~~~~~~ 182 (1070)
+|.++++|+.|+.|.....++.+..|++|++|+..+|.+|.|+++|..|++|+...+++..+..||+|.|.+|...+..+
T Consensus 109 ip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~ 188 (577)
T KOG1258|consen 109 IPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRH 188 (577)
T ss_pred hhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHH
Confidence 99999999999999998889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcchhhHHHHHHHhhcCCcc-ccccchhhhHHHhhhcCcchhHHHHH-HHHHHHHHHHHHHHHH
Q 001486 183 YDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVP-AYYKDDETSSVIKDLLDPSVDLVRSK-AIQKYRFIGEQIYKEA 260 (1070)
Q Consensus 183 ~~~~~~~~~~~~eal~~~~~~~~~~~~~~~~~~~l~-~~~~~~e~~~~i~~~~~~~~~~~~a~-~~~~~~~~~~~~y~~a 260 (1070)
|..|.+.++..+..+....+.....-.....+.... .....++....+....+.++..+.++ .+..+..+++..|...
T Consensus 189 f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s 268 (577)
T KOG1258|consen 189 FDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKS 268 (577)
T ss_pred HHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhh
Confidence 999999988865443322211111110111000000 11222344445556666677777666 3445566788999999
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhCChh
Q 001486 261 SQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGRE 340 (1070)
Q Consensus 261 ~~~~~~~~~fE~ai~~~~~~~~~~~p~~~~~W~~yi~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e 340 (1070)
.+...++..||..|+++|+++.++++.+...|+.|++|+.+.|+++++..+|+||+.+|..+.++|+.|+.+++..|+.+
T Consensus 269 ~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~ 348 (577)
T KOG1258|consen 269 EEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVS 348 (577)
T ss_pred HhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhchHHHHHHHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001486 341 IASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEAL 420 (1070)
Q Consensus 341 ~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~eA~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~vyekal 420 (1070)
.|..++.+|++++.+.-|.+++.++.|++..|+++.|+.+|++...++ |+.+.+-+.++.++++.|+++.+....+--.
T Consensus 349 ~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s 427 (577)
T KOG1258|consen 349 LANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDANYKNELYS 427 (577)
T ss_pred HHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhhHHHHHHH
Confidence 999999999999999999999999999999999999999999999777 9999999999999999999999985222222
Q ss_pred HHHHhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCCcchhHHHHHHHHHhcc
Q 001486 421 ETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLLLEELIKFTMVHGGRSHISIVDAVISNALYS 500 (1070)
Q Consensus 421 ~~~~~~~~~~~~~~l~i~~A~~~~~~~g~~e~Ar~iyekaL~~~P~~~~lw~~y~~~e~~~g~~~~~~~ar~l~ekAl~~ 500 (1070)
..............+++.++++.+...++.+.|+.++..|+...|++..+|..+++|+...+...+......++...+..
T Consensus 428 ~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~d~~e~~~~~~~~~ 507 (577)
T KOG1258|consen 428 SIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQPSGREYDLLEPIDWKELKM 507 (577)
T ss_pred HhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCcchhhhhhhhHHHHHHhh
Confidence 22223334556788999999998889999999999999999999999999999999999988666655444455544432
Q ss_pred CCcccccCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Q 001486 501 RPDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQHIKLF 544 (1070)
Q Consensus 501 ~~~~s~~l~~~~~~~l~~~~~~~e~~~G~~~~a~~~~~ra~~~~ 544 (1070)
- .+.++..---..|++|.+.+|....+.+...++++.+
T Consensus 508 ~------~~~~~~~~~~~k~~ef~e~~g~~~~~~~~~~~~l~~~ 545 (577)
T KOG1258|consen 508 L------IDFDDSRSSTDKYIEFLEWFGIDHKGAQDERPHLKNF 545 (577)
T ss_pred h------ccccccccchHHHHHHHHhccchhHhHhhchHHHHHH
Confidence 1 1111111112238999999999998888888887776
No 5
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=8.5e-42 Score=369.14 Aligned_cols=496 Identities=18% Similarity=0.271 Sum_probs=392.9
Q ss_pred cCCCCCCCCCCcch----------HHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHCCCCHHHHHHH
Q 001486 10 SLSAEPNSPVGFGK----------QGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKY 79 (1070)
Q Consensus 10 ~~~~~~~~~~~~~~----------~~le~~l~~nP~s~~~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P~s~~lW~~y 79 (1070)
.....|+..+.|.+ +.||..|++|-.++..|++|+..-+.. +++.+||.+|||||..+-.+..+|+.|
T Consensus 36 ~~~~ppk~~ItD~~EL~eYq~RkRkefEd~irrnR~~~~~WikYaqwEesq--~e~~RARSv~ERALdvd~r~itLWlkY 113 (677)
T KOG1915|consen 36 AAPRPPKQKITDSEELSEYQLRKRKEFEDQIRRNRLNMQVWIKYAQWEESQ--KEIQRARSVFERALDVDYRNITLWLKY 113 (677)
T ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHhcccccchHHHHH
Confidence 34556666665533 378999999999999999999988887 899999999999999999999999999
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHcc
Q 001486 80 ADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQ 159 (1070)
Q Consensus 80 a~~e~~~~~~e~A~~lferAL~~~P~s~~lW~~y~~~~~~~~~~~~~ar~vferAL~~~p~~~~s~~lW~~yi~fe~~~~ 159 (1070)
++++++.+.+..|+.++.||+...|.--.+|..|+-++... |+++.||.+|+|-+.--| ....|..|++||.+.+
T Consensus 114 ae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~L-gNi~gaRqiferW~~w~P----~eqaW~sfI~fElRyk 188 (677)
T KOG1915|consen 114 AEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEML-GNIAGARQIFERWMEWEP----DEQAWLSFIKFELRYK 188 (677)
T ss_pred HHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHh-cccHHHHHHHHHHHcCCC----cHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999998888 999999999999998766 3578999999999999
Q ss_pred cHHHHHHHHHHHH-ccCCcCHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHhhcCCccccccchhh---hHHHhhhcC
Q 001486 160 RWSSLAQIFVQTL-RFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDET---SSVIKDLLD 235 (1070)
Q Consensus 160 ~~~~a~~iy~raL-~~p~~~~~~~~~~~~~~~~~~~eal~~~~~~~~~~~~~~~~~~~l~~~~~~~e~---~~~i~~~~~ 235 (1070)
.++.||.||.|.+ ..|....|.-|..|+.-.+.... ...+++..++.. + ++.+. -.....|-+
T Consensus 189 eieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~---------aR~VyerAie~~-~---~d~~~e~lfvaFA~fEe 255 (677)
T KOG1915|consen 189 EIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVAL---------ARSVYERAIEFL-G---DDEEAEILFVAFAEFEE 255 (677)
T ss_pred HHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHH---------HHHHHHHHHHHh-h---hHHHHHHHHHHHHHHHH
Confidence 9999999999995 56655555555555443333211 223333333211 1 11121 222345556
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------h--cc--cCCCCCCCChHHHHHHHHHHHHHHH
Q 001486 236 PSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENL----------I--RR--PYFHVKPLDDIQLKNWHDYLSFAEK 301 (1070)
Q Consensus 236 ~~~~~~~a~~~~~~~~~~~~~y~~a~~~~~~~~~fE~a----------i--~~--~~~~~~~~~p~~~~~W~~yi~~~~~ 301 (1070)
..+++++++.++++.+..- --.++.++++....||+. | ++ .|......+|.+.+.|+.|++++++
T Consensus 256 ~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~ 334 (677)
T KOG1915|consen 256 RQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEES 334 (677)
T ss_pred HHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHh
Confidence 7788999999988754210 011233444444444442 1 11 2333334689999999999999999
Q ss_pred cCCHHHHHHHHHHHhccCCC---------CHHHHHHHHHHHHh-hCChhHHHHHHHHHHHHHhhh----chHHHHHHHHH
Q 001486 302 QGDFDWVVKLYERCLIPCAD---------YPEFWMRYVDFMES-KGGREIASYALDRATQIFLKR----LPVIHLFNARY 367 (1070)
Q Consensus 302 ~g~~~~a~~~yerAL~~~p~---------~~~lW~~ya~~l~~-~g~~e~A~~il~rAl~~~~~~----~p~i~~~~a~~ 367 (1070)
.|+.++++.+|+||+...|- +.-+|++|+.|.+. ..+.+.++.||.+++.+ .|+ ...+|++||.|
T Consensus 335 ~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~f 413 (677)
T KOG1915|consen 335 VGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQF 413 (677)
T ss_pred cCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHH
Confidence 99999999999999986654 34689999987764 45789999999999997 332 34899999999
Q ss_pred HHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhc
Q 001486 368 KEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTT 447 (1070)
Q Consensus 368 e~~~g~~~eA~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~ 447 (1070)
+.++.++..||+++.+|+..+ |. .+++-.|+.++..++++|+|+++|++-|+. .|.+..+|+.||.++. .+
T Consensus 414 eIRq~~l~~ARkiLG~AIG~c-PK-~KlFk~YIelElqL~efDRcRkLYEkfle~------~Pe~c~~W~kyaElE~-~L 484 (677)
T KOG1915|consen 414 EIRQLNLTGARKILGNAIGKC-PK-DKLFKGYIELELQLREFDRCRKLYEKFLEF------SPENCYAWSKYAELET-SL 484 (677)
T ss_pred HHHHcccHHHHHHHHHHhccC-Cc-hhHHHHHHHHHHHHhhHHHHHHHHHHHHhc------ChHhhHHHHHHHHHHH-Hh
Confidence 999999999999999999544 43 567889999999999999999999999998 7888899999999998 99
Q ss_pred CCHHHHHHHHHHHHhhCCCc--HHHHHHHHHHHHHcCCCcchhHHHHHHHHHhccCCcccccCChhhHHHHHHHHHHHHH
Q 001486 448 GSADNARDILIDGIKHVPNC--KLLLEELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLD 525 (1070)
Q Consensus 448 g~~e~Ar~iyekaL~~~P~~--~~lw~~y~~~e~~~g~~~~~~~ar~l~ekAl~~~~~~s~~l~~~~~~~l~~~~~~~e~ 525 (1070)
|+.|+||.||+-||....-+ ..+|..|++||...|..++ +|.+|++.|.... ...+|..+++||.
T Consensus 485 gdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ek---aR~LYerlL~rt~----------h~kvWisFA~fe~ 551 (677)
T KOG1915|consen 485 GDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEK---ARALYERLLDRTQ----------HVKVWISFAKFEA 551 (677)
T ss_pred hhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHH---HHHHHHHHHHhcc----------cchHHHhHHHHhc
Confidence 99999999999999765433 3699999999999987665 7899999996432 2248999999996
Q ss_pred -----HhC-----------CHHHHHHHHHHHHHhCCCCcc
Q 001486 526 -----LCG-----------TIHDIRNAWNQHIKLFPHTVR 549 (1070)
Q Consensus 526 -----~~G-----------~~~~a~~~~~ra~~~~p~~~~ 549 (1070)
.-| ++..|+++|+||+..+.+++.
T Consensus 552 s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~ 591 (677)
T KOG1915|consen 552 SASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTP 591 (677)
T ss_pred cccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCc
Confidence 445 778899999999999977653
No 6
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=6.5e-38 Score=339.13 Aligned_cols=486 Identities=16% Similarity=0.214 Sum_probs=325.6
Q ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 001486 23 KQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQS 102 (1070)
Q Consensus 23 ~~~le~~l~~nP~s~~~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P~s~~lW~~ya~~e~~~~~~e~A~~lferAL~~ 102 (1070)
...+|++|..+-.++.+|++|+++-.+. ..+.-||.++.||+...|.--.+|++|+-++..+|++.-|+.+|+|-+..
T Consensus 93 RSv~ERALdvd~r~itLWlkYae~Emkn--k~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w 170 (677)
T KOG1915|consen 93 RSVFERALDVDYRNITLWLKYAEFEMKN--KQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEW 170 (677)
T ss_pred HHHHHHHHhcccccchHHHHHHHHHHhh--hhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcC
Confidence 3479999999999999999999987766 67889999999999999999999999998888888766666666666665
Q ss_pred cCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHcccHHHHHHHHHHHHccCCc--CHH
Q 001486 103 ATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSK--KLH 180 (1070)
Q Consensus 103 ~P~s~~lW~~y~~~~~~~~~~~~~ar~vferAL~~~p~~~~s~~lW~~yi~fe~~~~~~~~a~~iy~raL~~p~~--~~~ 180 (1070)
.| ....|..|++|++.. +.++.||.+|+|.+-.-| ...-|+.|++||+++|.+..++.+|.+++..--. ..+
T Consensus 171 ~P-~eqaW~sfI~fElRy-keieraR~IYerfV~~HP----~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e 244 (677)
T KOG1915|consen 171 EP-DEQAWLSFIKFELRY-KEIERARSIYERFVLVHP----KVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAE 244 (677)
T ss_pred CC-cHHHHHHHHHHHHHh-hHHHHHHHHHHHHheecc----cHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHH
Confidence 44 455666666666555 555566666665554332 2345666666666666666666666665542111 122
Q ss_pred HHHHHHHHHHHHHHHHhhhcchhhHHHHHHHhhcCCcc-------ccccchhh----hHHHhhhcCcch--hHH--HHHH
Q 001486 181 HYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVP-------AYYKDDET----SSVIKDLLDPSV--DLV--RSKA 245 (1070)
Q Consensus 181 ~~~~~~~~~~~~~~eal~~~~~~~~~~~~~~~~~~~l~-------~~~~~~e~----~~~i~~~~~~~~--~~~--~a~~ 245 (1070)
.++..|..|.....+--.+ ..++...++..-. ..+...|. ..+|++.+-... .++ ....
T Consensus 245 ~lfvaFA~fEe~qkE~ERa------r~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n 318 (677)
T KOG1915|consen 245 ILFVAFAEFEERQKEYERA------RFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN 318 (677)
T ss_pred HHHHHHHHHHHHHHHHHHH------HHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC
Confidence 2333444433332211000 0001000000000 00000000 000000000000 000 0000
Q ss_pred H--HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCh-----HHHHHHHHHHHHHH-HcCCHHHHHHHHHHHhc
Q 001486 246 I--QKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDD-----IQLKNWHDYLSFAE-KQGDFDWVVKLYERCLI 317 (1070)
Q Consensus 246 ~--~~~~~~~~~~y~~a~~~~~~~~~fE~ai~~~~~~~~~~~p-----~~~~~W~~yi~~~~-~~g~~~~a~~~yerAL~ 317 (1070)
. |+-|..--.+-+...+...-+..||++|.. +.+... .-+-+|++|+.|++ ...|.++++.+|.+||.
T Consensus 319 p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan----vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~ 394 (677)
T KOG1915|consen 319 PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN----VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD 394 (677)
T ss_pred CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc----CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 0 110100001111112334456789998842 222222 34578999988875 46789999999999999
Q ss_pred cCCCC----HHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhhhch--HHHHHHHHHHHHhCCHHHHHHHHHHHhhccChh
Q 001486 318 PCADY----PEFWMRYVDFMESKGGREIASYALDRATQIFLKRLP--VIHLFNARYKEQIGDTSAARAAFPESYIDSDSR 391 (1070)
Q Consensus 318 ~~p~~----~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p--~i~~~~a~~e~~~g~~~eA~~~~~~al~~~~p~ 391 (1070)
.-|+. ..+|+.||.|..+..++..||.++-+|+.. || .+.-.|..++...+++|+.|++|++-+ +..|.
T Consensus 395 lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~----cPK~KlFk~YIelElqL~efDRcRkLYEkfl-e~~Pe 469 (677)
T KOG1915|consen 395 LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGK----CPKDKLFKGYIELELQLREFDRCRKLYEKFL-EFSPE 469 (677)
T ss_pred hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhcc----CCchhHHHHHHHHHHHHhhHHHHHHHHHHHH-hcChH
Confidence 77763 789999999999999999999999999987 55 466678888999999999999999999 88899
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHH
Q 001486 392 FIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLLL 471 (1070)
Q Consensus 392 ~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~g~~e~Ar~iyekaL~~~P~~~~lw 471 (1070)
+.-+|+++|.++..+|+.++|+.+|+-|+... . ...-..+|-.|..|+. ..|.+++||++|++.|...++++ +|
T Consensus 470 ~c~~W~kyaElE~~LgdtdRaRaifelAi~qp--~--ldmpellwkaYIdFEi-~~~E~ekaR~LYerlL~rt~h~k-vW 543 (677)
T KOG1915|consen 470 NCYAWSKYAELETSLGDTDRARAIFELAISQP--A--LDMPELLWKAYIDFEI-EEGEFEKARALYERLLDRTQHVK-VW 543 (677)
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCc--c--cccHHHHHHHhhhhhh-hcchHHHHHHHHHHHHHhcccch-HH
Confidence 99999999999999999999999999999861 1 1112346777777777 99999999999999999999888 89
Q ss_pred HHHHHHHHHc--CCCc-----------chhHHHHHHHHHhccCCcccccCChhhHHHHHHHHHHHHHHhCCHHHHHHHHH
Q 001486 472 EELIKFTMVH--GGRS-----------HISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWN 538 (1070)
Q Consensus 472 ~~y~~~e~~~--g~~~-----------~~~~ar~l~ekAl~~~~~~s~~l~~~~~~~l~~~~~~~e~~~G~~~~a~~~~~ 538 (1070)
+.++.|+... |+.. .+.+||.+|++|.....+ .-+.+.+..|.+.|.+||..+|+..+...+-.
T Consensus 544 isFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~---~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s 620 (677)
T KOG1915|consen 544 ISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKE---STPKEERLMLLEAWKNMEETFGTEGDVERVQS 620 (677)
T ss_pred HhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHh---cCcHHHHHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 9999999843 2222 456899999999865432 23356778999999999999998888777755
Q ss_pred HH
Q 001486 539 QH 540 (1070)
Q Consensus 539 ra 540 (1070)
+.
T Consensus 621 ~m 622 (677)
T KOG1915|consen 621 KM 622 (677)
T ss_pred hc
Confidence 53
No 7
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=100.00 E-value=2.2e-35 Score=317.76 Aligned_cols=465 Identities=16% Similarity=0.258 Sum_probs=375.9
Q ss_pred CCCCCCCcchHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHH
Q 001486 14 EPNSPVGFGKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVV 93 (1070)
Q Consensus 14 ~~~~~~~~~~~~le~~l~~nP~s~~~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P~s~~lW~~ya~~e~~~~~~e~A~ 93 (1070)
||..-+--|...|++.|+.||+|+-.|+.++++++.. +..++.|++|+.++.-||.-...|..|+.-+...++|..+.
T Consensus 19 e~~~~i~~D~lrLRerIkdNPtnI~S~fqLiq~~~tq--~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE 96 (660)
T COG5107 19 EPSDNIHGDELRLRERIKDNPTNILSYFQLIQYLETQ--ESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVE 96 (660)
T ss_pred CcccCCCchHHHHHHHhhcCchhHHHHHHHHHHHhhh--hhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHH
Confidence 3444444466799999999999999999999999988 89999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhhCCC-----hhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHH---------cc
Q 001486 94 EVFERAVQSATYSVDVWFHYCSLSMSTFED-----PNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEIS---------QQ 159 (1070)
Q Consensus 94 ~lferAL~~~P~s~~lW~~y~~~~~~~~~~-----~~~ar~vferAL~~~p~~~~s~~lW~~yi~fe~~---------~~ 159 (1070)
.+|.|||+. ..+++||..|+.|+.+...+ -..+-++|+..+...+.++.+..+|..|+.|.+. ..
T Consensus 97 ~lf~rCL~k-~l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQq 175 (660)
T COG5107 97 SLFGRCLKK-SLNLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQ 175 (660)
T ss_pred HHHHHHHhh-hccHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHH
Confidence 999999998 46899999999999887322 2346678888888888888899999999999874 34
Q ss_pred cHHHHHHHHHHHHccCCcCHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHhhcCCccccccchhhhHHHhhhcCcchh
Q 001486 160 RWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVD 239 (1070)
Q Consensus 160 ~~~~a~~iy~raL~~p~~~~~~~~~~~~~~~~~~~eal~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~i~~~~~~~~~ 239 (1070)
+++.+|++|.|+|..|.++++++|..|..|...++.+.+- .++.+ .++
T Consensus 176 rid~iR~~Y~ral~tP~~nleklW~dy~~fE~e~N~~Tar-----------Kfvge--------------------~sp- 223 (660)
T COG5107 176 RIDKIRNGYMRALQTPMGNLEKLWKDYENFELELNKITAR-----------KFVGE--------------------TSP- 223 (660)
T ss_pred HHHHHHHHHHHHHcCccccHHHHHHHHHHHHHHHHHHHHH-----------HHhcc--------------------cCH-
Confidence 6788999999999999999999999999999887654321 11111 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCC----CCCCChHHHHHHHHHHHHHHHcC-----C--HHHH
Q 001486 240 LVRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFH----VKPLDDIQLKNWHDYLSFAEKQG-----D--FDWV 308 (1070)
Q Consensus 240 ~~~a~~~~~~~~~~~~~y~~a~~~~~~~~~fE~ai~~~~~~----~~~~~p~~~~~W~~yi~~~~~~g-----~--~~~a 308 (1070)
.|..|+..+..+...-+++++.-.. ...........|+++|+|+.++| + ..++
T Consensus 224 ----------------~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l~L~~~~~~qRi 287 (660)
T COG5107 224 ----------------IYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEMENGLKLGGRPHEQRI 287 (660)
T ss_pred ----------------HHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhHhhcCCcccCCCcHHHHH
Confidence 1344444444444444443221000 00011223356999999998765 2 3478
Q ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhhhchHHHHHHHHHHHHhCCHHHHHHHHHHHhhcc
Q 001486 309 VKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDS 388 (1070)
Q Consensus 309 ~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~eA~~~~~~al~~~ 388 (1070)
-.+|+.++...+..+++|+.|..++...++-+.|....+|++.. +|.+.+.++..++..++-++.+.+|++++..+
T Consensus 288 ~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~----spsL~~~lse~yel~nd~e~v~~~fdk~~q~L 363 (660)
T COG5107 288 HYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEM----SPSLTMFLSEYYELVNDEEAVYGCFDKCTQDL 363 (660)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccC----CCchheeHHHHHhhcccHHHHhhhHHHHHHHH
Confidence 88999999999999999999999999999999999999999876 88889999999888888887777777654210
Q ss_pred -----------------Ch------------hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHH
Q 001486 389 -----------------DS------------RFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQF 439 (1070)
Q Consensus 389 -----------------~p------------~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~ 439 (1070)
++ ...-+|+-+.+..++...++.||++|-++.+. .....++|+.-
T Consensus 364 ~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~------~~~~h~vyi~~ 437 (660)
T COG5107 364 KRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKE------GIVGHHVYIYC 437 (660)
T ss_pred HHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhcc------CCCCcceeeeH
Confidence 01 12235777888888888999999999999887 45778999999
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCCcchhHHHHHHHHHhccCCcccccCChhhHHHHHHH
Q 001486 440 SRLTYTTTGSADNARDILIDGIKHVPNCKLLLEELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSL 519 (1070)
Q Consensus 440 A~~~~~~~g~~e~Ar~iyekaL~~~P~~~~lw~~y~~~e~~~g~~~~~~~ar~l~ekAl~~~~~~s~~l~~~~~~~l~~~ 519 (1070)
|.+++...||...|.+||+-|+..+|+++.+-..|+.|++..|+.++ ||++||+++.+ +-....+.||..
T Consensus 438 A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~n---araLFetsv~r-------~~~~q~k~iy~k 507 (660)
T COG5107 438 AFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEEN---ARALFETSVER-------LEKTQLKRIYDK 507 (660)
T ss_pred HHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHH---HHHHHHHhHHH-------HHHhhhhHHHHH
Confidence 99998889999999999999999999999999999999999998876 67999999863 333456899999
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCCCcc
Q 001486 520 YLQFLDLCGTIHDIRNAWNQHIKLFPHTVR 549 (1070)
Q Consensus 520 ~~~~e~~~G~~~~a~~~~~ra~~~~p~~~~ 549 (1070)
|+++|..+|++..+..+-+|....+|....
T Consensus 508 mi~YEs~~G~lN~v~sLe~rf~e~~pQen~ 537 (660)
T COG5107 508 MIEYESMVGSLNNVYSLEERFRELVPQENL 537 (660)
T ss_pred HHHHHHhhcchHHHHhHHHHHHHHcCcHhH
Confidence 999999999999999999999999998544
No 8
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=100.00 E-value=1.6e-30 Score=291.17 Aligned_cols=497 Identities=14% Similarity=0.215 Sum_probs=353.4
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhc----CC--CcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Q 001486 24 QGLEEFIAEGSLDFDEWTSLLSEIENS----CP--DDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFE 97 (1070)
Q Consensus 24 ~~le~~l~~nP~s~~~W~~li~~~~~~----~~--~~~~~a~~vyeraL~~~P~s~~lW~~ya~~e~~~~~~e~A~~lfe 97 (1070)
..||++++..|.|+++|..|++.-... .+ ..++.....|||+|...-..+.+|+.|+.+..+.+++...+..|.
T Consensus 47 ~lYERal~~lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~lv~mHkmpRIwl~Ylq~l~~Q~~iT~tR~tfd 126 (835)
T KOG2047|consen 47 LLYERALKELPGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERCLVFMHKMPRIWLDYLQFLIKQGLITRTRRTFD 126 (835)
T ss_pred HHHHHHHHHCCCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcchHHHHHHHHH
Confidence 379999999999999999999754431 11 346778899999999998999999999999999999999999999
Q ss_pred HHHHhcCC--CHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHcCCCC---------------------------------
Q 001486 98 RAVQSATY--SVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDY--------------------------------- 142 (1070)
Q Consensus 98 rAL~~~P~--s~~lW~~y~~~~~~~~~~~~~ar~vferAL~~~p~~~--------------------------------- 142 (1070)
|||...|- +-+||-.|++|+.++ +-++.+.++|+|-|+..|...
T Consensus 127 rALraLpvtqH~rIW~lyl~Fv~~~-~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~ 205 (835)
T KOG2047|consen 127 RALRALPVTQHDRIWDLYLKFVESH-GLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKK 205 (835)
T ss_pred HHHHhCchHhhccchHHHHHHHHhC-CChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhc
Confidence 99999875 568999999999998 888888999988886433210
Q ss_pred --C--------------------------------------chHHHHHHHHHHHHcccHHHHHHHHHHHHcc--CCcCHH
Q 001486 143 --L--------------------------------------CHTMWDKYIEFEISQQRWSSLAQIFVQTLRF--PSKKLH 180 (1070)
Q Consensus 143 --~--------------------------------------s~~lW~~yi~fe~~~~~~~~a~~iy~raL~~--p~~~~~ 180 (1070)
. -+.||...+++..+.|.+++|+.+|.+++.. .-.++.
T Consensus 206 gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt 285 (835)
T KOG2047|consen 206 GKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFT 285 (835)
T ss_pred ccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHH
Confidence 0 2466777777777778899999999999753 334777
Q ss_pred HHHHHHHHHHHHHHHHhhhcchhhHHHHHHHhhcCCccccccchhhhHH---HhhhcCcchhHHHHHHH----HH--HHH
Q 001486 181 HYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSV---IKDLLDPSVDLVRSKAI----QK--YRF 251 (1070)
Q Consensus 181 ~~~~~~~~~~~~~~eal~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~---i~~~~~~~~~~~~a~~~----~~--~~~ 251 (1070)
.+|+.|..|....-.+. .+ +.+...+..-++.++..- +..+++..+.+.....+ .. .|.
T Consensus 286 ~ifd~Ya~FEE~~~~~~-----------me-~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~ 353 (835)
T KOG2047|consen 286 QIFDAYAQFEESCVAAK-----------ME-LADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWH 353 (835)
T ss_pred HHHHHHHHHHHHHHHHH-----------Hh-hhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHH
Confidence 88888888766532110 00 000000000000111110 01111111111100000 00 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCC---HHHHH
Q 001486 252 IGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPC-ADY---PEFWM 327 (1070)
Q Consensus 252 ~~~~~y~~a~~~~~~~~~fE~ai~~~~~~~~~~~p~~~~~W~~yi~~~~~~g~~~~a~~~yerAL~~~-p~~---~~lW~ 327 (1070)
-+-.+|+. ...+.+..|.++++..--. ..-..--.+|..+++|++.+|+.+.|+.+|++|+... +.- ..+|+
T Consensus 354 kRV~l~e~--~~~~~i~tyteAv~~vdP~--ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~ 429 (835)
T KOG2047|consen 354 KRVKLYEG--NAAEQINTYTEAVKTVDPK--KAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWC 429 (835)
T ss_pred hhhhhhcC--ChHHHHHHHHHHHHccCcc--cCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHH
Confidence 01111111 1123456677777541000 0111223689999999999999999999999999864 333 57899
Q ss_pred HHHHHHHhhCChhHHHHHHHHHHHHHhh-----------------hchHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCh
Q 001486 328 RYVDFMESKGGREIASYALDRATQIFLK-----------------RLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDS 390 (1070)
Q Consensus 328 ~ya~~l~~~g~~e~A~~il~rAl~~~~~-----------------~~p~i~~~~a~~e~~~g~~~eA~~~~~~al~~~~p 390 (1070)
.+|....++.+++.|+.++++|+.+..+ +...+|..|+.+|+..|-++..+.+|++.+ ++.-
T Consensus 430 ~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdrii-dLri 508 (835)
T KOG2047|consen 430 AWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRII-DLRI 508 (835)
T ss_pred HHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHH-HHhc
Confidence 9999988999999999999999975322 113699999999999999999999999998 6666
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhh--cCCHHHHHHHHHHHHhhCCC--
Q 001486 391 RFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTT--TGSADNARDILIDGIKHVPN-- 466 (1070)
Q Consensus 391 ~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~--~g~~e~Ar~iyekaL~~~P~-- 466 (1070)
.++.+.++||.|+....-++++.++|+++|.+|+ .|...++|+.|-.-..++ ..+++.||.+||+||+.||.
T Consensus 509 aTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk----~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~ 584 (835)
T KOG2047|consen 509 ATPQIIINYAMFLEEHKYFEESFKAYERGISLFK----WPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEH 584 (835)
T ss_pred CCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCC----CccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHH
Confidence 6788899999999999999999999999999974 455567776553322223 34689999999999999985
Q ss_pred cHHHHHHHHHHHHHcCCCcchh---------------------------------HHHHHHHHHhccCCcccccCChhhH
Q 001486 467 CKLLLEELIKFTMVHGGRSHIS---------------------------------IVDAVISNALYSRPDVLKVFSLEDV 513 (1070)
Q Consensus 467 ~~~lw~~y~~~e~~~g~~~~~~---------------------------------~ar~l~ekAl~~~~~~s~~l~~~~~ 513 (1070)
.+.+++.|++||..+|-..++- +.|.+|++|+. .+|..+.
T Consensus 585 aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe-------~Lp~~~~ 657 (835)
T KOG2047|consen 585 AKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIE-------SLPDSKA 657 (835)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHH-------hCChHHH
Confidence 4579999999999987432210 34555555553 5777788
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcc
Q 001486 514 EDISSLYLQFLDLCGTIHDIRNAWNQHIKLFPHTVR 549 (1070)
Q Consensus 514 ~~l~~~~~~~e~~~G~~~~a~~~~~ra~~~~p~~~~ 549 (1070)
.++...+.+||-..|.++.|+.+|..+-++|+.+-.
T Consensus 658 r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~ 693 (835)
T KOG2047|consen 658 REMCLRFADLETKLGEIDRARAIYAHGSQICDPRVT 693 (835)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCC
Confidence 889999999999999999999999999999976554
No 9
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=100.00 E-value=2.5e-30 Score=289.55 Aligned_cols=466 Identities=16% Similarity=0.192 Sum_probs=363.4
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc
Q 001486 24 QGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSA 103 (1070)
Q Consensus 24 ~~le~~l~~nP~s~~~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P~s~~lW~~ya~~e~~~~~~e~A~~lferAL~~~ 103 (1070)
..|....+.||.+...|+.-+++-+.. +.+..|+.+..+.++..|.|.++|+..+++. ..+.|+.+...|+..+
T Consensus 272 ~llKSvretnP~hp~gWIAsArLEEva--gKl~~Ar~~I~~GCe~cprSeDvWLeaiRLh----p~d~aK~vvA~Avr~~ 345 (913)
T KOG0495|consen 272 LLLKSVRETNPKHPPGWIASARLEEVA--GKLSVARNLIMKGCEECPRSEDVWLEAIRLH----PPDVAKTVVANAVRFL 345 (913)
T ss_pred HHHHHHHhcCCCCCchHHHHHHHHHHh--hHHHHHHHHHHHHHhhCCchHHHHHHHHhcC----ChHHHHHHHHHHHHhC
Confidence 367778889999999999999987777 8999999999999999999999999999875 5677999999999999
Q ss_pred CCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHcccHHHHHHHHHHHHc-cCCc-CHHH
Q 001486 104 TYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLR-FPSK-KLHH 181 (1070)
Q Consensus 104 P~s~~lW~~y~~~~~~~~~~~~~ar~vferAL~~~p~~~~s~~lW~~yi~fe~~~~~~~~a~~iy~raL~-~p~~-~~~~ 181 (1070)
|.|+.||+.-++++... ..-++|+.+||..+|. +.+||...++||.. +.||.++.|++. +|.+ ++|.
T Consensus 346 P~Sv~lW~kA~dLE~~~----~~K~RVlRKALe~iP~---sv~LWKaAVelE~~----~darilL~rAveccp~s~dLwl 414 (913)
T KOG0495|consen 346 PTSVRLWLKAADLESDT----KNKKRVLRKALEHIPR---SVRLWKAAVELEEP----EDARILLERAVECCPQSMDLWL 414 (913)
T ss_pred CCChhhhhhHHhhhhHH----HHHHHHHHHHHHhCCc---hHHHHHHHHhccCh----HHHHHHHHHHHHhccchHHHHH
Confidence 99999999999986543 6678899999999987 78999999998863 459999999975 4544 3444
Q ss_pred HHHH---HHHHHHHHHHHhhhcchhhHHHHHHHhhcCCccccccchhhhHHHhhhcCcchhHHHHH-----HHHH-----
Q 001486 182 YYDS---FKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSK-----AIQK----- 248 (1070)
Q Consensus 182 ~~~~---~~~~~~~~~eal~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~i~~~~~~~~~~~~a~-----~~~~----- 248 (1070)
.+.. |......++.+-. .+ .++.++|.....+-+..+...+.. .+..
T Consensus 415 AlarLetYenAkkvLNkaRe-----------------~i---ptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ng 474 (913)
T KOG0495|consen 415 ALARLETYENAKKVLNKARE-----------------II---PTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANG 474 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHh-----------------hC---CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcc
Confidence 3322 2222222221100 00 111222221111111111111110 0000
Q ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHhhcccCCCCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHH
Q 001486 249 YRFIGEQIYKEASQLDEK--INCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFW 326 (1070)
Q Consensus 249 ~~~~~~~~y~~a~~~~~~--~~~fE~ai~~~~~~~~~~~p~~~~~W~~yi~~~~~~g~~~~a~~~yerAL~~~p~~~~lW 326 (1070)
+.+-+.+++.+|.+..+. ...-. +|-+........+.+....|..-++.+++.+.++-++.+|..||..+|....+|
T Consensus 475 v~i~rdqWl~eAe~~e~agsv~TcQ-AIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slW 553 (913)
T KOG0495|consen 475 VEINRDQWLKEAEACEDAGSVITCQ-AIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLW 553 (913)
T ss_pred eeecHHHHHHHHHHHhhcCChhhHH-HHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHH
Confidence 011133444444332111 00000 111111222334567788999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCChhHHHHHHHHHHHHHhhhchHHHHHHHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHc
Q 001486 327 MRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRL 406 (1070)
Q Consensus 327 ~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~eA~~~~~~al~~~~p~~~~~w~~~a~le~~~ 406 (1070)
+..+.|....|..++...+|.+|+.. .|..+.+|++++......|++-.||.++..++ +.+|++.++|+....++.+.
T Consensus 554 lra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af-~~~pnseeiwlaavKle~en 631 (913)
T KOG0495|consen 554 LRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAF-EANPNSEEIWLAAVKLEFEN 631 (913)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHH-HhCCCcHHHHHHHHHHhhcc
Confidence 99999999999999999999999987 66778899999999999999999999999999 78899999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCCcc
Q 001486 407 GNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLLLEELIKFTMVHGGRSH 486 (1070)
Q Consensus 407 g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~g~~e~Ar~iyekaL~~~P~~~~lw~~y~~~e~~~g~~~~ 486 (1070)
..+++||.+|.+|... ..+..+|+..+.+++ ..+.+++|+++++++|+.+|+...+|+....++...++.+
T Consensus 632 ~e~eraR~llakar~~-------sgTeRv~mKs~~~er-~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie- 702 (913)
T KOG0495|consen 632 DELERARDLLAKARSI-------SGTERVWMKSANLER-YLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIE- 702 (913)
T ss_pred ccHHHHHHHHHHHhcc-------CCcchhhHHHhHHHH-HhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHH-
Confidence 9999999999999886 567899999999998 9999999999999999999999999999999999887654
Q ss_pred hhHHHHHHHHHhccCCcccccCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcc
Q 001486 487 ISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQHIKLFPHTVR 549 (1070)
Q Consensus 487 ~~~ar~l~ekAl~~~~~~s~~l~~~~~~~l~~~~~~~e~~~G~~~~a~~~~~ra~~~~p~~~~ 549 (1070)
.+|..|...++.+| ....||....++|+..|.+-.|+.+++|+....|+...
T Consensus 703 --~aR~aY~~G~k~cP---------~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~ 754 (913)
T KOG0495|consen 703 --MAREAYLQGTKKCP---------NSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNAL 754 (913)
T ss_pred --HHHHHHHhccccCC---------CCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcch
Confidence 47899999998776 34679999999999999999999999999999999876
No 10
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.97 E-value=3.4e-28 Score=270.74 Aligned_cols=396 Identities=15% Similarity=0.141 Sum_probs=267.5
Q ss_pred cccccCCCCCCCCCCcchHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q 001486 6 SNLESLSAEPNSPVGFGKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKAR 85 (1070)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~le~~l~~nP~s~~~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P~s~~lW~~ya~~e~~ 85 (1070)
+++....++-++..+ .-+.+|+++|.-.+++-.++++++.. |++.+|...|+.++++.|+..+.|+.++.-+..
T Consensus 89 ~ai~~q~~r~d~s~a----~~~~a~r~~~q~ae~ysn~aN~~ker--g~~~~al~~y~~aiel~p~fida~inla~al~~ 162 (966)
T KOG4626|consen 89 SAIFFQGSRLDKSSA----GSLLAIRKNPQGAEAYSNLANILKER--GQLQDALALYRAAIELKPKFIDAYINLAAALVT 162 (966)
T ss_pred hhhhhcccchhhhhh----hhhhhhhccchHHHHHHHHHHHHHHh--chHHHHHHHHHHHHhcCchhhHHHhhHHHHHHh
Confidence 444555555555555 45789999999999999999999887 999999999999999999999999999999999
Q ss_pred hCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHcccHHHHH
Q 001486 86 LCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLA 165 (1070)
Q Consensus 86 ~~~~e~A~~lferAL~~~P~s~~lW~~y~~~~~~~~~~~~~ar~vferAL~~~p~~~~s~~lW~~yi~fe~~~~~~~~a~ 165 (1070)
.++.+.|..+|-.||..+|...........++... |..++|...|-+|+.+-|. -...|....-.....|++-.++
T Consensus 163 ~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~-Grl~ea~~cYlkAi~~qp~---fAiawsnLg~~f~~~Gei~~ai 238 (966)
T KOG4626|consen 163 QGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAE-GRLEEAKACYLKAIETQPC---FAIAWSNLGCVFNAQGEIWLAI 238 (966)
T ss_pred cCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhh-cccchhHHHHHHHHhhCCc---eeeeehhcchHHhhcchHHHHH
Confidence 99999999999999999999999999988888888 9999999999999998875 3568988888888899999999
Q ss_pred HHHHHHHccCCcCHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHhhcCCccccccchhhhHHHhhhcCcchhHHHHHH
Q 001486 166 QIFVQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKA 245 (1070)
Q Consensus 166 ~iy~raL~~p~~~~~~~~~~~~~~~~~~~eal~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~i~~~~~~~~~~~~a~~ 245 (1070)
.-|.+++++.+.-+..++. +..-
T Consensus 239 q~y~eAvkldP~f~dAYiN----LGnV----------------------------------------------------- 261 (966)
T KOG4626|consen 239 QHYEEAVKLDPNFLDAYIN----LGNV----------------------------------------------------- 261 (966)
T ss_pred HHHHHhhcCCCcchHHHhh----HHHH-----------------------------------------------------
Confidence 9999999876553333221 1111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHH
Q 001486 246 IQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEF 325 (1070)
Q Consensus 246 ~~~~~~~~~~~y~~a~~~~~~~~~fE~ai~~~~~~~~~~~p~~~~~W~~yi~~~~~~g~~~~a~~~yerAL~~~p~~~~l 325 (1070)
|.+++...+++..|++++. +.|+...++-+++..+.+.|..+-|+..|+|||...|+.+++
T Consensus 262 -----------~ke~~~~d~Avs~Y~rAl~--------lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~A 322 (966)
T KOG4626|consen 262 -----------YKEARIFDRAVSCYLRALN--------LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDA 322 (966)
T ss_pred -----------HHHHhcchHHHHHHHHHHh--------cCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHH
Confidence 1111222223333444432 234444445555555555556666666666666666666666
Q ss_pred HHHHHHHHHhhCChhHHHHHHHHHHHHHhhhchHHHHHHHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHH
Q 001486 326 WMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERR 405 (1070)
Q Consensus 326 W~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~eA~~~~~~al~~~~p~~~~~w~~~a~le~~ 405 (1070)
+.++|..+.+.|++.+|...|.+|+.+ .++.+.....+|.+..+.|.+++|..+|++++ ++.|++...+.+++.++..
T Consensus 323 y~NlanALkd~G~V~ea~~cYnkaL~l-~p~hadam~NLgni~~E~~~~e~A~~ly~~al-~v~p~~aaa~nNLa~i~kq 400 (966)
T KOG4626|consen 323 YNNLANALKDKGSVTEAVDCYNKALRL-CPNHADAMNNLGNIYREQGKIEEATRLYLKAL-EVFPEFAAAHNNLASIYKQ 400 (966)
T ss_pred HhHHHHHHHhccchHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHhccchHHHHHHHHHH-hhChhhhhhhhhHHHHHHh
Confidence 666666665566666666666666654 34444455555555555666666666666665 5555555555666666666
Q ss_pred cCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCCc
Q 001486 406 LGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLLLEELIKFTMVHGGRS 485 (1070)
Q Consensus 406 ~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~g~~e~Ar~iyekaL~~~P~~~~lw~~y~~~e~~~g~~~ 485 (1070)
.|++++|+.+|++||.. .|.+++.|.++|..+. +.|+.+.|..+|++||..+|.-.+....++.+.+..|+..
T Consensus 401 qgnl~~Ai~~YkealrI------~P~fAda~~NmGnt~k-e~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~ 473 (966)
T KOG4626|consen 401 QGNLDDAIMCYKEALRI------KPTFADALSNMGNTYK-EMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIP 473 (966)
T ss_pred cccHHHHHHHHHHHHhc------CchHHHHHHhcchHHH-HhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcH
Confidence 66666666666666655 4555666666666554 5666666666666666666655555555555555555443
Q ss_pred chhHHHHHHHHHhc
Q 001486 486 HISIVDAVISNALY 499 (1070)
Q Consensus 486 ~~~~ar~l~ekAl~ 499 (1070)
. |-..|+.||+
T Consensus 474 ~---AI~sY~~aLk 484 (966)
T KOG4626|consen 474 E---AIQSYRTALK 484 (966)
T ss_pred H---HHHHHHHHHc
Confidence 3 3355555554
No 11
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.96 E-value=4.5e-28 Score=269.79 Aligned_cols=396 Identities=14% Similarity=0.128 Sum_probs=340.9
Q ss_pred CcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChhHHHHHHH
Q 001486 53 DDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFK 132 (1070)
Q Consensus 53 ~~~~~a~~vyeraL~~~P~s~~lW~~ya~~e~~~~~~e~A~~lferAL~~~P~s~~lW~~y~~~~~~~~~~~~~ar~vfe 132 (1070)
.++++-..--..++++.|...+.+-.|+......|++.+|..+|+.||+..|+.++.|+.++.-++.. |+.+.|-..|-
T Consensus 96 ~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~-~~~~~a~~~~~ 174 (966)
T KOG4626|consen 96 SRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQ-GDLELAVQCFF 174 (966)
T ss_pred cchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhc-CCCcccHHHHH
Confidence 35555556667889999999999999999999999999999999999999999999999999999998 99999999999
Q ss_pred HHHHHcCCCCCchHHHHHHHHHHHHcccHHHHHHHHHHHHccCCcCHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHh
Q 001486 133 RALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELV 212 (1070)
Q Consensus 133 rAL~~~p~~~~s~~lW~~yi~fe~~~~~~~~a~~iy~raL~~p~~~~~~~~~~~~~~~~~~~eal~~~~~~~~~~~~~~~ 212 (1070)
.||...|..+ ..-.....+.+..|..+++...|.+++..-+ .+...|.
T Consensus 175 ~alqlnP~l~---ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp-~fAiaws---------------------------- 222 (966)
T KOG4626|consen 175 EALQLNPDLY---CARSDLGNLLKAEGRLEEAKACYLKAIETQP-CFAIAWS---------------------------- 222 (966)
T ss_pred HHHhcCcchh---hhhcchhHHHHhhcccchhHHHHHHHHhhCC-ceeeeeh----------------------------
Confidence 9999888543 2233455667778888899999998886422 1111111
Q ss_pred hcCCccccccchhhhHHHhhhcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCChHHHHHH
Q 001486 213 LEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNW 292 (1070)
Q Consensus 213 ~~~~l~~~~~~~e~~~~i~~~~~~~~~~~~a~~~~~~~~~~~~~y~~a~~~~~~~~~fE~ai~~~~~~~~~~~p~~~~~W 292 (1070)
+ ....|....+....+..||++++ ++|+..+++
T Consensus 223 ----------n-----------------------------Lg~~f~~~Gei~~aiq~y~eAvk--------ldP~f~dAY 255 (966)
T KOG4626|consen 223 ----------N-----------------------------LGCVFNAQGEIWLAIQHYEEAVK--------LDPNFLDAY 255 (966)
T ss_pred ----------h-----------------------------cchHHhhcchHHHHHHHHHHhhc--------CCCcchHHH
Confidence 0 11124445556667788888875 789999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhhhchHHHHHHHHHHHHhC
Q 001486 293 HDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIG 372 (1070)
Q Consensus 293 ~~yi~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g 372 (1070)
++++..+++.+.+++|+..|.||+..-|++..++.++|.+|...|.+|.|+..|+||+++ .|+.|..++.+|..+...|
T Consensus 256 iNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~-~P~F~~Ay~NlanALkd~G 334 (966)
T KOG4626|consen 256 INLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL-QPNFPDAYNNLANALKDKG 334 (966)
T ss_pred hhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhc-CCCchHHHhHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999999999998 8889999999999999999
Q ss_pred CHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhcCCHHH
Q 001486 373 DTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADN 452 (1070)
Q Consensus 373 ~~~eA~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~g~~e~ 452 (1070)
++.+|...|.+++ .+.|.+.+...++++++++.|.++.|..+|++|++. .|.+.....++|.++. ..|++++
T Consensus 335 ~V~ea~~cYnkaL-~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v------~p~~aaa~nNLa~i~k-qqgnl~~ 406 (966)
T KOG4626|consen 335 SVTEAVDCYNKAL-RLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEV------FPEFAAAHNNLASIYK-QQGNLDD 406 (966)
T ss_pred chHHHHHHHHHHH-HhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhh------ChhhhhhhhhHHHHHH-hcccHHH
Confidence 9999999999999 788999999999999999999999999999999998 6889999999999997 9999999
Q ss_pred HHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCCcchhHHHHHHHHHhccCCcccccCChhhHHHHHHHHHHHHHHhCCHHH
Q 001486 453 ARDILIDGIKHVPNCKLLLEELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTIHD 532 (1070)
Q Consensus 453 Ar~iyekaL~~~P~~~~lw~~y~~~e~~~g~~~~~~~ar~l~ekAl~~~~~~s~~l~~~~~~~l~~~~~~~e~~~G~~~~ 532 (1070)
|..+|+.+|++.|...+.+..........|+... |-..|++|+..+| ...+. +.-.....++.|++.+
T Consensus 407 Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~---A~q~y~rAI~~nP--------t~AeA-hsNLasi~kDsGni~~ 474 (966)
T KOG4626|consen 407 AIMCYKEALRIKPTFADALSNMGNTYKEMGDVSA---AIQCYTRAIQINP--------TFAEA-HSNLASIYKDSGNIPE 474 (966)
T ss_pred HHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHH---HHHHHHHHHhcCc--------HHHHH-HhhHHHHhhccCCcHH
Confidence 9999999999999999999999999999998765 5699999997655 33333 3334456688999999
Q ss_pred HHHHHHHHHHhCCCCcc
Q 001486 533 IRNAWNQHIKLFPHTVR 549 (1070)
Q Consensus 533 a~~~~~ra~~~~p~~~~ 549 (1070)
|...|+.++++-|+...
T Consensus 475 AI~sY~~aLklkPDfpd 491 (966)
T KOG4626|consen 475 AIQSYRTALKLKPDFPD 491 (966)
T ss_pred HHHHHHHHHccCCCCch
Confidence 99999999999999776
No 12
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=2.6e-24 Score=249.15 Aligned_cols=435 Identities=18% Similarity=0.221 Sum_probs=321.3
Q ss_pred chHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh---CCHHHHHHHHHH
Q 001486 22 GKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARL---CSIDKVVEVFER 98 (1070)
Q Consensus 22 ~~~~le~~l~~nP~s~~~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P~s~~lW~~ya~~e~~~---~~~e~A~~lfer 98 (1070)
.+..+++.+..|++++.....||.++++. +++++.+.....+.+++|.++.+|+.|+..+... .+...+..+|++
T Consensus 98 ei~t~~ee~ai~~y~~~~~v~Li~llrk~--~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ek 175 (881)
T KOG0128|consen 98 EIRTLEEELAINSYKYAQMVQLIGLLRKL--GDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEK 175 (881)
T ss_pred HHHHHHHHhcccccchHHHHHHHHHHHHh--cchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHH
Confidence 45589999999999999999999999998 9999999999999999999999999999987654 567889999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHhhC------CChhHHHHHHHHHHHHcCCCCC-chHHHHHHHHHHHHcc---cHHHHHHHH
Q 001486 99 AVQSATYSVDVWFHYCSLSMSTF------EDPNDVRRLFKRALSFVGKDYL-CHTMWDKYIEFEISQQ---RWSSLAQIF 168 (1070)
Q Consensus 99 AL~~~P~s~~lW~~y~~~~~~~~------~~~~~ar~vferAL~~~p~~~~-s~~lW~~yi~fe~~~~---~~~~a~~iy 168 (1070)
||.. ..++.||..|+.|..... ++++..|.+|++||+.+|.+.. ...||.+|++|+...- ..+.+..+|
T Consensus 176 al~d-y~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~ 254 (881)
T KOG0128|consen 176 ALGD-YNSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALF 254 (881)
T ss_pred Hhcc-cccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 9997 689999999999988653 4678899999999999998865 4599999999998642 235688888
Q ss_pred HHHHccCCcCHHHHHHHHHHHHHH-HHHHhhhcchhhHHHHHHHhhcCCccccccchhhhHHHhhhcCcchhHHHHHHHH
Q 001486 169 VQTLRFPSKKLHHYYDSFKKLAGA-WKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQ 247 (1070)
Q Consensus 169 ~raL~~p~~~~~~~~~~~~~~~~~-~~eal~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~i~~~~~~~~~~~~a~~~~ 247 (1070)
.+.++.| .+.......|.++.+. +. +.
T Consensus 255 ~~el~~~-~D~~~~~~~~~~~sk~h~~----------------------------~~----------------------- 282 (881)
T KOG0128|consen 255 VRELKQP-LDEDTRGWDLSEQSKAHVY----------------------------DV----------------------- 282 (881)
T ss_pred HHHHhcc-chhhhhHHHHHHHHhcchH----------------------------HH-----------------------
Confidence 8888887 3232222223332211 00 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHH
Q 001486 248 KYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWM 327 (1070)
Q Consensus 248 ~~~~~~~~~y~~a~~~~~~~~~fE~ai~~~~~~~~~~~p~~~~~W~~yi~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~ 327 (1070)
+....++.+..+...+..||+.+. ..+.....|+.|++|+...|+..+....|+|++...+....+|+
T Consensus 283 ----~~~~~~~a~~~l~~~~~~~e~~~q--------~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~~~~wi 350 (881)
T KOG0128|consen 283 ----ETKKLDDALKNLAKILFKFERLVQ--------KEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLDRALWI 350 (881)
T ss_pred ----HhccHHHHHHHHHHHHHHHHHHhh--------hhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccHHHHh
Confidence 000011112222223344555443 34566779999999999999999999999999998889999999
Q ss_pred HHHHHHHhhCC-hhHHHHHHHHHHHHHhhhchHHHHHHHHH---HHHhCCH-HHHHHHHHHHhhccChhhHHHHHHHHHH
Q 001486 328 RYVDFMESKGG-REIASYALDRATQIFLKRLPVIHLFNARY---KEQIGDT-SAARAAFPESYIDSDSRFIEKVTFKANM 402 (1070)
Q Consensus 328 ~ya~~l~~~g~-~e~A~~il~rAl~~~~~~~p~i~~~~a~~---e~~~g~~-~eA~~~~~~al~~~~p~~~~~w~~~a~l 402 (1070)
.|+.++...-+ .+.+..++-||++. ||+....|.+. +++.+.. ......+.+++. ..+.+++.+..+
T Consensus 351 ~y~~~~d~eLkv~~~~~~~~~ra~R~----cp~tgdL~~rallAleR~re~~~vI~~~l~~~ls----~~~~l~~~~~~~ 422 (881)
T KOG0128|consen 351 GYGVYLDTELKVPQRGVSVHPRAVRS----CPWTGDLWKRALLALERNREEITVIVQNLEKDLS----MTVELHNDYLAY 422 (881)
T ss_pred hhhhhcccccccccccccccchhhcC----CchHHHHHHHHHHHHHhcCcchhhHHHHHHHHHH----HHHHHHHHHHHH
Confidence 99987765433 35666778888875 77544444433 2333322 223334444442 122234444444
Q ss_pred HHHcC------CHHHHHHHHHHHHHHHHhhccC--CCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHH-HHHH
Q 001486 403 ERRLG------NFVAACDTYKEALETAAEQRKF--HTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKL-LLEE 473 (1070)
Q Consensus 403 e~~~g------~~~~A~~vyekal~~~~~~~~~--~~~~~l~i~~A~~~~~~~g~~e~Ar~iyekaL~~~P~~~~-lw~~ 473 (1070)
.++.+ +++..++.|..|.+.+...... .....+.-.||.++...+++++.||.||+..+.....+.. .|+.
T Consensus 423 rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty~~~~iag~Wle 502 (881)
T KOG0128|consen 423 RRRCTNIIDSQDYSSLRAAFNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMTYGGGSIAGKWLE 502 (881)
T ss_pred HHhhcccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhccccCCcchHHHHHHH
Confidence 44443 5678889999999988655433 2345678899999998899999999999999887666666 9999
Q ss_pred HHHHHHHcCCCcchhHHHHHHHHHhccCCcccccCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 001486 474 LIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQH 540 (1070)
Q Consensus 474 y~~~e~~~g~~~~~~~ar~l~ekAl~~~~~~s~~l~~~~~~~l~~~~~~~e~~~G~~~~a~~~~~ra 540 (1070)
|++++..+|+... +|.++.+|+.. ..++++...+++.|.+||+++|+++.+..+-.+.
T Consensus 503 ~~~lE~~~g~~~~---~R~~~R~ay~~------~~~~~~~~ev~~~~~r~Ere~gtl~~~~~~~~~~ 560 (881)
T KOG0128|consen 503 AINLEREYGDGPS---ARKVLRKAYSQ------VVDPEDALEVLEFFRRFEREYGTLESFDLCPEKV 560 (881)
T ss_pred HHhHHHHhCCchh---HHHHHHHHHhc------CcCchhHHHHHHHHHHHHhccccHHHHhhhHHhh
Confidence 9999999999887 56899999863 3445778899999999999999999876665443
No 13
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.95 E-value=3.3e-23 Score=267.24 Aligned_cols=482 Identities=13% Similarity=0.048 Sum_probs=344.3
Q ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 001486 23 KQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQS 102 (1070)
Q Consensus 23 ~~~le~~l~~nP~s~~~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P~s~~lW~~ya~~e~~~~~~e~A~~lferAL~~ 102 (1070)
...|++++..+|.+...|..++..+... ++.++|...|+++++..|.....+..++..+.+.+++++|..++++.+..
T Consensus 383 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 460 (899)
T TIGR02917 383 AEYLAKATELDPENAAARTQLGISKLSQ--GDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKK 460 (899)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhC--CChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 4478888888888888888888777766 78888888888888888888777777777777778888888888888888
Q ss_pred cCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHcccHHHHHHHHHHHHccCCcCHHHH
Q 001486 103 ATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHY 182 (1070)
Q Consensus 103 ~P~s~~lW~~y~~~~~~~~~~~~~ar~vferAL~~~p~~~~s~~lW~~yi~fe~~~~~~~~a~~iy~raL~~p~~~~~~~ 182 (1070)
.|.+..+|..++..+... |++++|+..|+++++..|. ....|..++......|+++.+.++|++++...+.+...+
T Consensus 461 ~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 536 (899)
T TIGR02917 461 QPDNASLHNLLGAIYLGK-GDLAKAREAFEKALSIEPD---FFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAI 536 (899)
T ss_pred CCCCcHHHHHHHHHHHhC-CCHHHHHHHHHHHHhhCCC---cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHH
Confidence 888888888888877777 8888888888888876654 345666667777777788888888888776433332221
Q ss_pred HH--HHHHHHHHHHHHhhhcc------hhhHHHHHHHhhcCCccccccchhhhHHHhhhcCcchhHHHHHHHHHHHHHHH
Q 001486 183 YD--SFKKLAGAWKEELECES------DSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGE 254 (1070)
Q Consensus 183 ~~--~~~~~~~~~~eal~~~~------~~~~~~~~~~~~~~~l~~~~~~~e~~~~i~~~~~~~~~~~~a~~~~~~~~~~~ 254 (1070)
.. ......+.+++++.... .......... ...... .-+..+....+...++..+... ..+....
T Consensus 537 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l-~~~~~~-~~~~~~A~~~~~~~~~~~~~~~------~~~~~l~ 608 (899)
T TIGR02917 537 LALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALAL-AQYYLG-KGQLKKALAILNEAADAAPDSP------EAWLMLG 608 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHH-HHHHHH-CCCHHHHHHHHHHHHHcCCCCH------HHHHHHH
Confidence 11 11111122222211000 0000000000 000000 0000011111111111111000 0011111
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCCCCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 001486 255 QIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFME 334 (1070)
Q Consensus 255 ~~y~~a~~~~~~~~~fE~ai~~~~~~~~~~~p~~~~~W~~yi~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~ 334 (1070)
..|....+....+..|++.++ .+|.+...|..++..+...|++++|..+|++++..+|.+...|..++.++.
T Consensus 609 ~~~~~~~~~~~A~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 680 (899)
T TIGR02917 609 RAQLAAGDLNKAVSSFKKLLA--------LQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLL 680 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHH--------hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 122222333344455555553 345667789999999999999999999999999999999999999999999
Q ss_pred hhCChhHHHHHHHHHHHHHhhhchHHHHHHHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHH
Q 001486 335 SKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACD 414 (1070)
Q Consensus 335 ~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~eA~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~ 414 (1070)
..|++++|..+++++... .+..+.++...+.+....|++++|...|.+++ ...|+. .++..++.++...|++++|..
T Consensus 681 ~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~-~~~~~~-~~~~~l~~~~~~~g~~~~A~~ 757 (899)
T TIGR02917 681 AAKRTESAKKIAKSLQKQ-HPKAALGFELEGDLYLRQKDYPAAIQAYRKAL-KRAPSS-QNAIKLHRALLASGNTAEAVK 757 (899)
T ss_pred HcCCHHHHHHHHHHHHhh-CcCChHHHHHHHHHHHHCCCHHHHHHHHHHHH-hhCCCc-hHHHHHHHHHHHCCCHHHHHH
Confidence 999999999999998876 56667788888999999999999999999998 455544 678888999999999999999
Q ss_pred HHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCCcchhHHHHHH
Q 001486 415 TYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLLLEELIKFTMVHGGRSHISIVDAVI 494 (1070)
Q Consensus 415 vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~g~~e~Ar~iyekaL~~~P~~~~lw~~y~~~e~~~g~~~~~~~ar~l~ 494 (1070)
.|+++++. .|.+..++..+|.++. ..|++++|..+|+++++..|++..++..++......|+ .+ +...+
T Consensus 758 ~~~~~l~~------~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~---A~~~~ 826 (899)
T TIGR02917 758 TLEAWLKT------HPNDAVLRTALAELYL-AQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PR---ALEYA 826 (899)
T ss_pred HHHHHHHh------CCCCHHHHHHHHHHHH-HCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HH---HHHHH
Confidence 99999998 6788899999999998 99999999999999999999999999999888888887 33 67999
Q ss_pred HHHhccCCcccccCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcc
Q 001486 495 SNALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQHIKLFPHTVR 549 (1070)
Q Consensus 495 ekAl~~~~~~s~~l~~~~~~~l~~~~~~~e~~~G~~~~a~~~~~ra~~~~p~~~~ 549 (1070)
++++...+ + ...+|..++.+....|++++|...++++++..|....
T Consensus 827 ~~~~~~~~--------~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 872 (899)
T TIGR02917 827 EKALKLAP--------N-IPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAA 872 (899)
T ss_pred HHHHhhCC--------C-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChH
Confidence 99996433 2 2456777888888999999999999999999987543
No 14
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.94 E-value=6e-23 Score=264.84 Aligned_cols=474 Identities=12% Similarity=0.030 Sum_probs=350.4
Q ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 001486 23 KQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQS 102 (1070)
Q Consensus 23 ~~~le~~l~~nP~s~~~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P~s~~lW~~ya~~e~~~~~~e~A~~lferAL~~ 102 (1070)
...|++++..+|.+...+..++..+... ++.+++..+++++++.+|.+...|..++..+...+++++|+.+|++++..
T Consensus 417 ~~~~~~a~~~~~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 494 (899)
T TIGR02917 417 IADLETAAQLDPELGRADLLLILSYLRS--GQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSI 494 (899)
T ss_pred HHHHHHHHhhCCcchhhHHHHHHHHHhc--CCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhh
Confidence 4478888888888888888887777766 88888888888888888888888888888888888888888888888888
Q ss_pred cCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHcccHHHHHHHHHHHHccCCcCHHHH
Q 001486 103 ATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHY 182 (1070)
Q Consensus 103 ~P~s~~lW~~y~~~~~~~~~~~~~ar~vferAL~~~p~~~~s~~lW~~yi~fe~~~~~~~~a~~iy~raL~~p~~~~~~~ 182 (1070)
.|.+...|..++.++... |++++|+++|++++...|. ...+|..++.+....|+.++++.+|.+++...+.+....
T Consensus 495 ~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 570 (899)
T TIGR02917 495 EPDFFPAAANLARIDIQE-GNPDDAIQRFEKVLTIDPK---NLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPA 570 (899)
T ss_pred CCCcHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCcC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHH
Confidence 888888888888888877 8888888888888887665 456777778877778888888888888876544333222
Q ss_pred HH--HHHHHHHHHHHHhhhcc------hhhHHHHHHHhhcCCccccccchhhhHHHhhhcCcchhHHHHHHHHHHHHHHH
Q 001486 183 YD--SFKKLAGAWKEELECES------DSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGE 254 (1070)
Q Consensus 183 ~~--~~~~~~~~~~eal~~~~------~~~~~~~~~~~~~~~l~~~~~~~e~~~~i~~~~~~~~~~~~a~~~~~~~~~~~ 254 (1070)
+. .+....+.+++++.... ......+.... ..... .-+-.+....+..+++..+....+. ....
T Consensus 571 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~-~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~------~~l~ 642 (899)
T TIGR02917 571 LALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLG-RAQLA-AGDLNKAVSSFKKLLALQPDSALAL------LLLA 642 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHH-HHHHH-cCCHHHHHHHHHHHHHhCCCChHHH------HHHH
Confidence 21 11111122222221100 00000110000 00000 0000011111111111111100000 0011
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCCCCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 001486 255 QIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFME 334 (1070)
Q Consensus 255 ~~y~~a~~~~~~~~~fE~ai~~~~~~~~~~~p~~~~~W~~yi~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~ 334 (1070)
..|....+....+..|+++++ .+|++...|..++..+...|+++++..+++++....|....+|..++.++.
T Consensus 643 ~~~~~~~~~~~A~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 714 (899)
T TIGR02917 643 DAYAVMKNYAKAITSLKRALE--------LKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYL 714 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHh--------cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHH
Confidence 112222223334445555543 457778899999999999999999999999999999999999999999999
Q ss_pred hhCChhHHHHHHHHHHHHHhhhchHHHHHHHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHH
Q 001486 335 SKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACD 414 (1070)
Q Consensus 335 ~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~eA~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~ 414 (1070)
..|++++|...|++++.. .++. ..+..++.++...|++++|...+.+++ ...|+...++..++.++...|++++|..
T Consensus 715 ~~g~~~~A~~~~~~~~~~-~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l-~~~~~~~~~~~~la~~~~~~g~~~~A~~ 791 (899)
T TIGR02917 715 RQKDYPAAIQAYRKALKR-APSS-QNAIKLHRALLASGNTAEAVKTLEAWL-KTHPNDAVLRTALAELYLAQKDYDKAIK 791 (899)
T ss_pred HCCCHHHHHHHHHHHHhh-CCCc-hHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHCcCHHHHHH
Confidence 999999999999999987 3333 577778889999999999999999998 5678888999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCCcchhHHHHHH
Q 001486 415 TYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLLLEELIKFTMVHGGRSHISIVDAVI 494 (1070)
Q Consensus 415 vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~g~~e~Ar~iyekaL~~~P~~~~lw~~y~~~e~~~g~~~~~~~ar~l~ 494 (1070)
+|+++++. .|.++.++..+|.++. ..|+ ++|+.+|+++++..|++..+|..++.+....|+.++ +..+|
T Consensus 792 ~~~~~~~~------~p~~~~~~~~l~~~~~-~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---A~~~~ 860 (899)
T TIGR02917 792 HYRTVVKK------APDNAVVLNNLAWLYL-ELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADR---ALPLL 860 (899)
T ss_pred HHHHHHHh------CCCCHHHHHHHHHHHH-hcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHH---HHHHH
Confidence 99999998 6788999999999987 8888 889999999999999999999999999988887765 66999
Q ss_pred HHHhccCCcccccCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 001486 495 SNALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQHI 541 (1070)
Q Consensus 495 ekAl~~~~~~s~~l~~~~~~~l~~~~~~~e~~~G~~~~a~~~~~ra~ 541 (1070)
++++...+ . ...++..++......|+.++|..++++++
T Consensus 861 ~~a~~~~~--------~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 861 RKAVNIAP--------E-AAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHhhCC--------C-ChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 99997544 2 35678888888999999999999999876
No 15
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.93 E-value=1.8e-21 Score=256.04 Aligned_cols=483 Identities=12% Similarity=0.051 Sum_probs=325.9
Q ss_pred chHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHCCCCHHHH----------------HHHHHHHHH
Q 001486 22 GKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYW----------------RKYADHKAR 85 (1070)
Q Consensus 22 ~~~~le~~l~~nP~s~~~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P~s~~lW----------------~~ya~~e~~ 85 (1070)
....|++.+..+|+|..++...+.++... ++.++|.+.++++++..|.+..+| +..++++..
T Consensus 47 a~~~l~kl~~~~p~~p~~~~~~~~~~l~~--g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~ 124 (1157)
T PRK11447 47 VRQSLYRLELIDPNNPDVIAARFRLLLRQ--GDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLAT 124 (1157)
T ss_pred HHHHHHHHHccCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHh
Confidence 34589999999999999999999988877 999999999999999999998876 444556777
Q ss_pred hCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHcccHHHHH
Q 001486 86 LCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLA 165 (1070)
Q Consensus 86 ~~~~e~A~~lferAL~~~P~s~~lW~~y~~~~~~~~~~~~~ar~vferAL~~~p~~~~s~~lW~~yi~fe~~~~~~~~a~ 165 (1070)
.+++++|..+|++++...|.+..+=+.|...+....++.++|++.|+++++..|. ...+|..+..+....++.++|.
T Consensus 125 ~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~---~~~~~~~LA~ll~~~g~~~eAl 201 (1157)
T PRK11447 125 TGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPG---NTGLRNTLALLLFSSGRRDEGF 201 (1157)
T ss_pred CCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHccCCHHHHH
Confidence 8999999999999999988888765556555444348899999999999998876 4578889999998889999999
Q ss_pred HHHHHHHccCCcCHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHhhcCCccccccchhhh---HHHhhhcC--cchhH
Q 001486 166 QIFVQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETS---SVIKDLLD--PSVDL 240 (1070)
Q Consensus 166 ~iy~raL~~p~~~~~~~~~~~~~~~~~~~eal~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~---~~i~~~~~--~~~~~ 240 (1070)
.+|++++..+....... ..+...+.... ........+...+. . ..+..++. ..+..... ..+..
T Consensus 202 ~~l~~~~~~~~~~~~aa-~~~~~~l~~~~-----~~~~~~~~l~~~l~--~---~p~~~~~~~A~~~L~~~~~~~~dp~~ 270 (1157)
T PRK11447 202 AVLEQMAKSPAGRDAAA-QLWYGQIKDMP-----VSDASVAALQKYLQ--V---FSDGDSVAAARSQLAEQQKQLADPAF 270 (1157)
T ss_pred HHHHHHhhCCCchHHHH-HHHHHHHhccC-----CChhhHHHHHHHHH--H---CCCchHHHHHHHHHHHHHHhccCcch
Confidence 99999987654321111 11111010000 00000000000000 0 00000000 00000000 00000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 001486 241 VRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCA 320 (1070)
Q Consensus 241 ~~a~~~~~~~~~~~~~y~~a~~~~~~~~~fE~ai~~~~~~~~~~~p~~~~~W~~yi~~~~~~g~~~~a~~~yerAL~~~p 320 (1070)
..+ .....+....+...++..|+++++ .+|++..+|..++..+...|++++|+..|++++...|
T Consensus 271 -~~~-------~~G~~~~~~g~~~~A~~~l~~aL~--------~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p 334 (1157)
T PRK11447 271 -RAR-------AQGLAAVDSGQGGKAIPELQQAVR--------ANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDP 334 (1157)
T ss_pred -HHH-------HHHHHHHHCCCHHHHHHHHHHHHH--------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 000 000111111222334445555554 4567778888888888888899999999999988777
Q ss_pred CCHH--HH------------HHHHHHHHhhCChhHHHHHHHHHHHHHhhhchHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Q 001486 321 DYPE--FW------------MRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYI 386 (1070)
Q Consensus 321 ~~~~--lW------------~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~eA~~~~~~al~ 386 (1070)
.+.. .| +..+..+.+.|++++|+..|++++.. .|.++.+++.++.++...|++++|+..|++++
T Consensus 335 ~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~-~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL- 412 (1157)
T PRK11447 335 HSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQV-DNTDSYAVLGLGDVAMARKDYAAAERYYQQAL- 412 (1157)
T ss_pred CccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-
Confidence 6542 22 23355667788889999999998887 66667788888888888899999999998888
Q ss_pred ccChhhHHHHHH------------------------------------------HHHHHHHcCCHHHHHHHHHHHHHHHH
Q 001486 387 DSDSRFIEKVTF------------------------------------------KANMERRLGNFVAACDTYKEALETAA 424 (1070)
Q Consensus 387 ~~~p~~~~~w~~------------------------------------------~a~le~~~g~~~~A~~vyekal~~~~ 424 (1070)
..+|++..++.. .+.++...|++++|+.+|+++++.
T Consensus 413 ~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~-- 490 (1157)
T PRK11447 413 RMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL-- 490 (1157)
T ss_pred HhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--
Confidence 455554444433 333445679999999999999998
Q ss_pred hhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCCcchhHHHHHHHHHhccCCc-
Q 001486 425 EQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLLLEELIKFTMVHGGRSHISIVDAVISNALYSRPD- 503 (1070)
Q Consensus 425 ~~~~~~~~~~l~i~~A~~~~~~~g~~e~Ar~iyekaL~~~P~~~~lw~~y~~~e~~~g~~~~~~~ar~l~ekAl~~~~~- 503 (1070)
.|..+.++..+|.++. ..|++++|+.+|+++++..|++...+..++.+....|+.+. +...|+++......
T Consensus 491 ----~P~~~~~~~~LA~~~~-~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~---Al~~l~~l~~~~~~~ 562 (1157)
T PRK11447 491 ----DPGSVWLTYRLAQDLR-QAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRA---ALAHLNTLPRAQWNS 562 (1157)
T ss_pred ----CCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHH---HHHHHHhCCchhcCh
Confidence 6888899999999998 99999999999999999999999888877776666555433 22333332110000
Q ss_pred ------------------------c-------cccCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcc
Q 001486 504 ------------------------V-------LKVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQHIKLFPHTVR 549 (1070)
Q Consensus 504 ------------------------~-------s~~l~~~~~~~l~~~~~~~e~~~G~~~~a~~~~~ra~~~~p~~~~ 549 (1070)
+ .-...+. ...++..........|+.++|.++|+++++..|++..
T Consensus 563 ~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~-~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~ 638 (1157)
T PRK11447 563 NIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPP-STRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNAD 638 (1157)
T ss_pred hHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCC-CchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 0 0000011 1235566777778899999999999999999998755
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.93 E-value=1.4e-21 Score=241.69 Aligned_cols=436 Identities=13% Similarity=0.078 Sum_probs=314.3
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 001486 39 EWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSM 118 (1070)
Q Consensus 39 ~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P~s~~lW~~ya~~e~~~~~~e~A~~lferAL~~~P~s~~lW~~y~~~~~ 118 (1070)
.+...+..+.+. +++++|...|+++++..|+ ..+|...+..+.+.+++++|+..|++||...|.+++.|...+..+.
T Consensus 129 ~~k~~G~~~~~~--~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRN--KDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 345566666666 9999999999999999996 6789999999999999999999999999999999999999999999
Q ss_pred hhCCChhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHcccHHHHHHHHHHHHccCCcC--HHHHHHHHHHHHHHHHHH
Q 001486 119 STFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKK--LHHYYDSFKKLAGAWKEE 196 (1070)
Q Consensus 119 ~~~~~~~~ar~vferAL~~~p~~~~s~~lW~~yi~fe~~~~~~~~a~~iy~raL~~p~~~--~~~~~~~~~~~~~~~~ea 196 (1070)
.. |++++|..-|..++...+... ..+-..+..... ..+...+..++.....+ .+.....|...... ..
T Consensus 206 ~l-g~~~eA~~~~~~~~~~~~~~~--~~~~~~~~~~l~-----~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~- 275 (615)
T TIGR00990 206 GL-GKYADALLDLTASCIIDGFRN--EQSAQAVERLLK-----KFAESKAKEILETKPENLPSVTFVGNYLQSFRP-KP- 275 (615)
T ss_pred Hc-CCHHHHHHHHHHHHHhCCCcc--HHHHHHHHHHHH-----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccC-Cc-
Confidence 98 999999999987766544321 111111111111 11222233333321111 11111111110000 00
Q ss_pred hhhcchhhHHHHHHHhhcCCccccccchhhhHHHhhhcCcchhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHh
Q 001486 197 LECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYR---FIGEQIYKEASQLDEKINCFENL 273 (1070)
Q Consensus 197 l~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~i~~~~~~~~~~~~a~~~~~~~---~~~~~~y~~a~~~~~~~~~fE~a 273 (1070)
.... + .. ..+.. +............ ......|. ..+..|+++
T Consensus 276 -------~~~~----~-~~-------~~~~~----------~~~~~~~~~l~~~~~e~~~~~~y~------~A~~~~~~a 320 (615)
T TIGR00990 276 -------RPAG----L-ED-------SNELD----------EETGNGQLQLGLKSPESKADESYE------EAARAFEKA 320 (615)
T ss_pred -------chhh----h-hc-------ccccc----------cccccchHHHHHHHHHhhhhhhHH------HHHHHHHHH
Confidence 0000 0 00 00000 0000000000000 00111233 234455656
Q ss_pred hcccCCCCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHH
Q 001486 274 IRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIF 353 (1070)
Q Consensus 274 i~~~~~~~~~~~p~~~~~W~~yi~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~ 353 (1070)
+.. ....|.....|..++.++...|++++|+..|++++...|.+...|+.+|.++...|++++|+..|++++..
T Consensus 321 l~~-----~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~- 394 (615)
T TIGR00990 321 LDL-----GKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKL- 394 (615)
T ss_pred Hhc-----CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-
Confidence 542 12457778889999999999999999999999999999999999999999999999999999999999987
Q ss_pred hhhchHHHHHHHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcH
Q 001486 354 LKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLP 433 (1070)
Q Consensus 354 ~~~~p~i~~~~a~~e~~~g~~~eA~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~ 433 (1070)
.|+++.+|+..|.++...|++++|+..|++++ .++|+....|+.++.++.+.|++++|+.+|+++++. .|..+
T Consensus 395 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal-~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~------~P~~~ 467 (615)
T TIGR00990 395 NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSI-DLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN------FPEAP 467 (615)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCh
Confidence 77888999999999999999999999999999 788999999999999999999999999999999998 68889
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHH-------HHHHHHHHcCCCcchhHHHHHHHHHhccCCcccc
Q 001486 434 LLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLLLE-------ELIKFTMVHGGRSHISIVDAVISNALYSRPDVLK 506 (1070)
Q Consensus 434 ~l~i~~A~~~~~~~g~~e~Ar~iyekaL~~~P~~~~lw~-------~y~~~e~~~g~~~~~~~ar~l~ekAl~~~~~~s~ 506 (1070)
.+|..+|.++. ..|++++|++.|+++++..|.....|. ..+.+....|+.+ .+..++++|+...+
T Consensus 468 ~~~~~lg~~~~-~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~---eA~~~~~kAl~l~p---- 539 (615)
T TIGR00990 468 DVYNYYGELLL-DQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFI---EAENLCEKALIIDP---- 539 (615)
T ss_pred HHHHHHHHHHH-HccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHH---HHHHHHHHHHhcCC----
Confidence 99999999998 999999999999999999887533222 1222222235444 46799999996433
Q ss_pred cCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCc
Q 001486 507 VFSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQHIKLFPHTV 548 (1070)
Q Consensus 507 ~l~~~~~~~l~~~~~~~e~~~G~~~~a~~~~~ra~~~~p~~~ 548 (1070)
+ ....+...+.+....|++++|.+.|++++++.+..+
T Consensus 540 ----~-~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~ 576 (615)
T TIGR00990 540 ----E-CDIAVATMAQLLLQQGDVDEALKLFERAAELARTEG 576 (615)
T ss_pred ----C-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHH
Confidence 2 234677778888899999999999999999987643
No 17
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.92 E-value=2.9e-21 Score=254.00 Aligned_cols=442 Identities=11% Similarity=0.031 Sum_probs=321.4
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcCCCHH------------HHH
Q 001486 44 LSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVD------------VWF 111 (1070)
Q Consensus 44 i~~~~~~~~~~~~~a~~vyeraL~~~P~s~~lW~~ya~~e~~~~~~e~A~~lferAL~~~P~s~~------------lW~ 111 (1070)
+..+... +++++|...|+++++.+|.+..+|..++..+.+.+++++|+.+|++|++..|.+.. .|.
T Consensus 276 G~~~~~~--g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~ 353 (1157)
T PRK11447 276 GLAAVDS--GQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL 353 (1157)
T ss_pred HHHHHHC--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence 3334445 89999999999999999999999999999999999999999999999999887643 232
Q ss_pred --HHHHHHHhhCCChhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHcccHHHHHHHHHHHHccCCcCHHHHHHHHHHH
Q 001486 112 --HYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKL 189 (1070)
Q Consensus 112 --~y~~~~~~~~~~~~~ar~vferAL~~~p~~~~s~~lW~~yi~fe~~~~~~~~a~~iy~raL~~p~~~~~~~~~~~~~~ 189 (1070)
..+..+... +++++|+..|++|+...|.+ ...|..........|++++|++.|++++++.+.+...+.....-+
T Consensus 354 ~~~~g~~~~~~-g~~~eA~~~~~~Al~~~P~~---~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~ 429 (1157)
T PRK11447 354 LIQQGDAALKA-NNLAQAERLYQQARQVDNTD---SYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLY 429 (1157)
T ss_pred HHHHHHHHHHC-CCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 224455666 89999999999999987763 457777788888899999999999999986444433221111100
Q ss_pred -HHHHHHHhhhcchhhHHHHHHHhhcCCccccccchhhhHHHhhhcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001486 190 -AGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKIN 268 (1070)
Q Consensus 190 -~~~~~eal~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~i~~~~~~~~~~~~a~~~~~~~~~~~~~y~~a~~~~~~~~ 268 (1070)
....++++.. + ..+.. .. ... +.... ..... ..+......+....+..+++.
T Consensus 430 ~~~~~~~A~~~--------l-~~l~~----~~--~~~----~~~~~-------~~l~~-~~~~~~a~~~~~~g~~~eA~~ 482 (1157)
T PRK11447 430 RQQSPEKALAF--------I-ASLSA----SQ--RRS----IDDIE-------RSLQN-DRLAQQAEALENQGKWAQAAE 482 (1157)
T ss_pred HhcCHHHHHHH--------H-HhCCH----HH--HHH----HHHHH-------HHhhh-hHHHHHHHHHHHCCCHHHHHH
Confidence 1111222110 0 00000 00 000 00000 00000 000001111222233344555
Q ss_pred HHHHhhcccCCCCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhCChhHHHHHHHH
Q 001486 269 CFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDR 348 (1070)
Q Consensus 269 ~fE~ai~~~~~~~~~~~p~~~~~W~~yi~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~r 348 (1070)
.|+++++ .+|++..++..++..+...|++++|+.+|++++...|.+...++.++.++...++.++|+.+|++
T Consensus 483 ~~~~Al~--------~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~ 554 (1157)
T PRK11447 483 LQRQRLA--------LDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNT 554 (1157)
T ss_pred HHHHHHH--------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 6666664 56777888999999999999999999999999999999999999999999999999999999987
Q ss_pred HHHHHh--------h-hchHHHHHHHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001486 349 ATQIFL--------K-RLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEA 419 (1070)
Q Consensus 349 Al~~~~--------~-~~p~i~~~~a~~e~~~g~~~eA~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~vyeka 419 (1070)
+..... . -.....+..+..+...|++++|+.+++. .|....+++.++.++.+.|++++|+.+|+++
T Consensus 555 l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~a 629 (1157)
T PRK11447 555 LPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRV 629 (1157)
T ss_pred CCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 542100 0 0112344556677889999999998872 4566778899999999999999999999999
Q ss_pred HHHHHhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCCcchhHHHHHHHHHhc
Q 001486 420 LETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLLLEELIKFTMVHGGRSHISIVDAVISNALY 499 (1070)
Q Consensus 420 l~~~~~~~~~~~~~~l~i~~A~~~~~~~g~~e~Ar~iyekaL~~~P~~~~lw~~y~~~e~~~g~~~~~~~ar~l~ekAl~ 499 (1070)
++. .|.++.+++.+|.++. ..|++++|+++|+++++..|++..++..++......|+.++ +..+|++++.
T Consensus 630 l~~------~P~~~~a~~~la~~~~-~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~e---A~~~~~~al~ 699 (1157)
T PRK11447 630 LTR------EPGNADARLGLIEVDI-AQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAA---AQRTFNRLIP 699 (1157)
T ss_pred HHh------CCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHH---HHHHHHHHhh
Confidence 998 6888999999999998 89999999999999999999999999999988888887655 6699999986
Q ss_pred cCCcccccCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Q 001486 500 SRPDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQHIKLF 544 (1070)
Q Consensus 500 ~~~~~s~~l~~~~~~~l~~~~~~~e~~~G~~~~a~~~~~ra~~~~ 544 (1070)
..++. .+......++.....+.+..|+.+.|...|++++...
T Consensus 700 ~~~~~---~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~ 741 (1157)
T PRK11447 700 QAKSQ---PPSMESALVLRDAARFEAQTGQPQQALETYKDAMVAS 741 (1157)
T ss_pred hCccC---CcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Confidence 43311 0111123566677889999999999999999998643
No 18
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.90 E-value=5e-21 Score=236.75 Aligned_cols=392 Identities=11% Similarity=0.051 Sum_probs=283.3
Q ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 001486 23 KQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQS 102 (1070)
Q Consensus 23 ~~~le~~l~~nP~s~~~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P~s~~lW~~ya~~e~~~~~~e~A~~lferAL~~ 102 (1070)
...|+++|..+|+ ...|..++..+... +++++|...|+++|+.+|++.+.|...+..+...+++++|+..|..++..
T Consensus 147 i~~y~~al~~~p~-~~~~~n~a~~~~~l--~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~ 223 (615)
T TIGR00990 147 IKLYSKAIECKPD-PVYYSNRAACHNAL--GDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCII 223 (615)
T ss_pred HHHHHHHHhcCCc-hHHHHHHHHHHHHh--CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4489999999995 67899998888888 99999999999999999999999999999999999999999999888777
Q ss_pred cCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHcCCCCC-------------------------------chHHHHHH
Q 001486 103 ATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYL-------------------------------CHTMWDKY 151 (1070)
Q Consensus 103 ~P~s~~lW~~y~~~~~~~~~~~~~ar~vferAL~~~p~~~~-------------------------------s~~lW~~y 151 (1070)
.+........++.-.+.. .+...+.++++..+.... ...+...+
T Consensus 224 ~~~~~~~~~~~~~~~l~~-----~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 298 (615)
T TIGR00990 224 DGFRNEQSAQAVERLLKK-----FAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLG 298 (615)
T ss_pred CCCccHHHHHHHHHHHHH-----HHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHH
Confidence 554433211111111100 111111122211111100 00111112
Q ss_pred HHHH--HHcccHHHHHHHHHHHHccCCcCHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHhhcCCccccccchhhhHH
Q 001486 152 IEFE--ISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSV 229 (1070)
Q Consensus 152 i~fe--~~~~~~~~a~~iy~raL~~p~~~~~~~~~~~~~~~~~~~eal~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~ 229 (1070)
..+. ...+.++.+.++|++++..........+. + ...+.
T Consensus 299 ~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a-~-~~lg~------------------------------------- 339 (615)
T TIGR00990 299 LKSPESKADESYEEAARAFEKALDLGKLGEKEAIA-L-NLRGT------------------------------------- 339 (615)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHH-H-HHHHH-------------------------------------
Confidence 1111 12357899999999998753110000000 0 00000
Q ss_pred HhhhcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCChHHHHHHHHHHHHHHHcCCHHHHH
Q 001486 230 IKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVV 309 (1070)
Q Consensus 230 i~~~~~~~~~~~~a~~~~~~~~~~~~~y~~a~~~~~~~~~fE~ai~~~~~~~~~~~p~~~~~W~~yi~~~~~~g~~~~a~ 309 (1070)
.|....+...++..|++++. ++|.....|..++..+...|++++|+
T Consensus 340 --------------------------~~~~~g~~~eA~~~~~kal~--------l~P~~~~~~~~la~~~~~~g~~~eA~ 385 (615)
T TIGR00990 340 --------------------------FKCLKGKHLEALADLSKSIE--------LDPRVTQSYIKRASMNLELGDPDKAE 385 (615)
T ss_pred --------------------------HHHHcCCHHHHHHHHHHHHH--------cCCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 00000111223334555553 46777889999999999999999999
Q ss_pred HHHHHHhccCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhhhchHHHHHHHHHHHHhCCHHHHHHHHHHHhhccC
Q 001486 310 KLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSD 389 (1070)
Q Consensus 310 ~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~eA~~~~~~al~~~~ 389 (1070)
..|++++..+|.+..+|+.+|.++...|++++|+..|++++.+ .|++..+|+.+|.++.+.|++++|+..|++++ ...
T Consensus 386 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l-~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al-~~~ 463 (615)
T TIGR00990 386 EDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL-DPDFIFSHIQLGVTQYKEGSIASSMATFRRCK-KNF 463 (615)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HhC
Confidence 9999999999999999999999999999999999999999997 66677789999999999999999999999999 677
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHH
Q 001486 390 SRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKL 469 (1070)
Q Consensus 390 p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~g~~e~Ar~iyekaL~~~P~~~~ 469 (1070)
|....+|..++.++...|++++|++.|++|+++.+...........++..+.+++...|++++|+.+|+++++..|++..
T Consensus 464 P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~ 543 (615)
T TIGR00990 464 PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDI 543 (615)
T ss_pred CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence 88899999999999999999999999999999832111000111223344444442579999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCcchhHHHHHHHHHhcc
Q 001486 470 LLEELIKFTMVHGGRSHISIVDAVISNALYS 500 (1070)
Q Consensus 470 lw~~y~~~e~~~g~~~~~~~ar~l~ekAl~~ 500 (1070)
.|..++.+....|+.+. |...|++|+..
T Consensus 544 a~~~la~~~~~~g~~~e---Ai~~~e~A~~l 571 (615)
T TIGR00990 544 AVATMAQLLLQQGDVDE---ALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHccCHHH---HHHHHHHHHHH
Confidence 99999999999998665 56899999853
No 19
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.89 E-value=1.8e-20 Score=208.05 Aligned_cols=421 Identities=15% Similarity=0.201 Sum_probs=284.3
Q ss_pred CCCcchHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhC-CH----HHH
Q 001486 18 PVGFGKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLC-SI----DKV 92 (1070)
Q Consensus 18 ~~~~~~~~le~~l~~nP~s~~~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P~s~~lW~~ya~~e~~~~-~~----e~A 92 (1070)
+.+...+.||+.+...|++..+|..+|+..-.. .+++...++|.|+|... .+.++|+.|+....+.+ .. +..
T Consensus 34 ~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~s--kdfe~VEkLF~RCLvkv-LnlDLW~lYl~YVR~~~~~~~~~r~~m 110 (656)
T KOG1914|consen 34 PIDKVRETYEQLVNVFPSSPRAWKLYIERELAS--KDFESVEKLFSRCLVKV-LNLDLWKLYLSYVRETKGKLFGYREKM 110 (656)
T ss_pred CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHH-hhHhHHHHHHHHHHHHccCcchHHHHH
Confidence 455556789999999999999999999976666 89999999999999876 66999999999866553 22 334
Q ss_pred HHHHHHHHHhc---CCCHHHHHHHHHHHHhhC--------CChhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHcccH
Q 001486 93 VEVFERAVQSA---TYSVDVWFHYCSLSMSTF--------EDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRW 161 (1070)
Q Consensus 93 ~~lferAL~~~---P~s~~lW~~y~~~~~~~~--------~~~~~ar~vferAL~~~p~~~~s~~lW~~yi~fe~~~~~~ 161 (1070)
...|+-|+..+ +.+..||..|+.|+.... .+++.+|++|.|||.. |.+- -..||..|..||.+.+ .
T Consensus 111 ~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~t-Pm~n-lEkLW~DY~~fE~~IN-~ 187 (656)
T KOG1914|consen 111 VQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVT-PMHN-LEKLWKDYEAFEQEIN-I 187 (656)
T ss_pred HHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcC-cccc-HHHHHHHHHHHHHHHH-H
Confidence 44566666554 577789999999987542 2578899999999964 5543 4699999999998753 2
Q ss_pred HHHHHHHHHHHccCCcCHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHhhcCCccccccchhhhHHHhhhcCcchhHH
Q 001486 162 SSLAQIFVQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLV 241 (1070)
Q Consensus 162 ~~a~~iy~raL~~p~~~~~~~~~~~~~~~~~~~eal~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~i~~~~~~~~~~~ 241 (1070)
-.++++...... .+......|.++..-.+ .+.. .+ -++.....+......++|+.+-+|-...+..+
T Consensus 188 ~tarK~i~e~s~----~Ym~AR~~~qel~~lt~-GL~r-~~-------~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t 254 (656)
T KOG1914|consen 188 ITARKFIGERSP----EYMNARRVYQELQNLTR-GLNR-NA-------PAVPPKGTKDEIQQVELWKNWIKWEKSNPLRT 254 (656)
T ss_pred HHHHHHHHhhCH----HHHHHHHHHHHHHHHHh-hhcc-cC-------CCCCCCCChHHHHHHHHHHHHHHHHhcCCccc
Confidence 334333221111 01111111222111100 0000 00 00000000000001122222222221111110
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCChHHHHHHHHHHHHHHHcCC--------------HHH
Q 001486 242 RSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGD--------------FDW 307 (1070)
Q Consensus 242 ~a~~~~~~~~~~~~~y~~a~~~~~~~~~fE~ai~~~~~~~~~~~p~~~~~W~~yi~~~~~~g~--------------~~~ 307 (1070)
....+. .-+-.-.||.++... +...++|+.|..++...++ .++
T Consensus 255 ~~~~~~---------------~~Rv~yayeQ~ll~l--------~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e 311 (656)
T KOG1914|consen 255 LDGTML---------------TRRVMYAYEQCLLYL--------GYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDE 311 (656)
T ss_pred ccccHH---------------HHHHHHHHHHHHHHH--------hcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHH
Confidence 000000 001112445554321 2345799999988877665 679
Q ss_pred HHHHHHHHhcc-CCCCHHHHHHHHHHHHhhCC---hhHHHHHHHHHHHHHhhhchHHHHHHHHHHHHhCCHHHHHHHHHH
Q 001486 308 VVKLYERCLIP-CADYPEFWMRYVDFMESKGG---REIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPE 383 (1070)
Q Consensus 308 a~~~yerAL~~-~p~~~~lW~~ya~~l~~~g~---~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~eA~~~~~~ 383 (1070)
+..+|||++.. ...+.-+++.|+.+.+..-+ .+..-.++++++.+...+..-+|+.+..+-.+..-+..||.+|.+
T Consensus 312 ~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~k 391 (656)
T KOG1914|consen 312 AASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKK 391 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHH
Confidence 99999999974 45567788999998887766 788889999999986666667999999999999999999999999
Q ss_pred HhhccChhhHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Q 001486 384 SYIDSDSRFIEKVTFKANMERR-LGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIK 462 (1070)
Q Consensus 384 al~~~~p~~~~~w~~~a~le~~-~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~g~~e~Ar~iyekaL~ 462 (1070)
|.+..... ..+++..|-+|.- .++.+.|..+|+-+|+. .+..+.+.+.|..++. ..|+-..||.+||++++
T Consensus 392 aR~~~r~~-hhVfVa~A~mEy~cskD~~~AfrIFeLGLkk------f~d~p~yv~~YldfL~-~lNdd~N~R~LFEr~l~ 463 (656)
T KOG1914|consen 392 AREDKRTR-HHVFVAAALMEYYCSKDKETAFRIFELGLKK------FGDSPEYVLKYLDFLS-HLNDDNNARALFERVLT 463 (656)
T ss_pred HhhccCCc-chhhHHHHHHHHHhcCChhHHHHHHHHHHHh------cCCChHHHHHHHHHHH-HhCcchhHHHHHHHHHh
Confidence 98533222 3566666665543 48999999999999999 5778888888888887 99999999999999999
Q ss_pred h--CCC-cHHHHHHHHHHHHHcCCCcchh
Q 001486 463 H--VPN-CKLLLEELIKFTMVHGGRSHIS 488 (1070)
Q Consensus 463 ~--~P~-~~~lw~~y~~~e~~~g~~~~~~ 488 (1070)
. .++ +..+|..+++||...|+...+.
T Consensus 464 s~l~~~ks~~Iw~r~l~yES~vGdL~si~ 492 (656)
T KOG1914|consen 464 SVLSADKSKEIWDRMLEYESNVGDLNSIL 492 (656)
T ss_pred ccCChhhhHHHHHHHHHHHHhcccHHHHH
Confidence 8 444 6789999999999999987643
No 20
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.88 E-value=1.7e-19 Score=222.98 Aligned_cols=326 Identities=10% Similarity=0.003 Sum_probs=231.7
Q ss_pred CcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChhHHHHHHH
Q 001486 53 DDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFK 132 (1070)
Q Consensus 53 ~~~~~a~~vyeraL~~~P~s~~lW~~ya~~e~~~~~~e~A~~lferAL~~~P~s~~lW~~y~~~~~~~~~~~~~ar~vfe 132 (1070)
|+..+|..+++.++...|.+...+..++......|+++.|...|++++...|.+.+.|..++..+... |++++|+..|+
T Consensus 56 g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~-g~~~~Ai~~l~ 134 (656)
T PRK15174 56 DETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKS-KQYATVADLAE 134 (656)
T ss_pred CCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 77788888888888888888888888887777778888888888888888888888888887777777 78888888888
Q ss_pred HHHHHcCCCCCchHHHHHHHHHHHHcccHHHHHHHHHHHHccCCcCHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHh
Q 001486 133 RALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELV 212 (1070)
Q Consensus 133 rAL~~~p~~~~s~~lW~~yi~fe~~~~~~~~a~~iy~raL~~p~~~~~~~~~~~~~~~~~~~eal~~~~~~~~~~~~~~~ 212 (1070)
+|+...|. ...+|...+......|+++.|..+|++++...+.....++. ... . +
T Consensus 135 ~Al~l~P~---~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~-~~~---l-------------------~ 188 (656)
T PRK15174 135 QAWLAFSG---NSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIAT-CLS---F-------------------L 188 (656)
T ss_pred HHHHhCCC---cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHH-HHH---H-------------------H
Confidence 88877665 45677777777777778888888777776532222111100 000 0 0
Q ss_pred hcCCccccccchhhhHHHhhhcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCChHHHHHH
Q 001486 213 LEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNW 292 (1070)
Q Consensus 213 ~~~~l~~~~~~~e~~~~i~~~~~~~~~~~~a~~~~~~~~~~~~~y~~a~~~~~~~~~fE~ai~~~~~~~~~~~p~~~~~W 292 (1070)
..+.+.+|... ++..++. .+ +.....+
T Consensus 189 ----------------------------------------~~g~~~eA~~~------~~~~l~~-----~~--~~~~~~~ 215 (656)
T PRK15174 189 ----------------------------------------NKSRLPEDHDL------ARALLPF-----FA--LERQESA 215 (656)
T ss_pred ----------------------------------------HcCCHHHHHHH------HHHHHhc-----CC--CcchhHH
Confidence 00001111111 1111111 00 0111122
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhCChhH----HHHHHHHHHHHHhhhchHHHHHHHHHH
Q 001486 293 HDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREI----ASYALDRATQIFLKRLPVIHLFNARYK 368 (1070)
Q Consensus 293 ~~yi~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~----A~~il~rAl~~~~~~~p~i~~~~a~~e 368 (1070)
...+..+...|++++|+..|++++...|.+..+|+.+|..+...|++++ |+..|++++.+ .|+++.++..++.++
T Consensus 216 ~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l-~P~~~~a~~~lg~~l 294 (656)
T PRK15174 216 GLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF-NSDNVRIVTLYADAL 294 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh-CCCCHHHHHHHHHHH
Confidence 3334555667888888888888888888888888888888888888875 78888888886 667777888888888
Q ss_pred HHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhcC
Q 001486 369 EQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTG 448 (1070)
Q Consensus 369 ~~~g~~~eA~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~g 448 (1070)
...|++++|+..|++++ ...|++..++..++.++...|++++|+..|+++++. .|....++...|.++. ..|
T Consensus 295 ~~~g~~~eA~~~l~~al-~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~------~P~~~~~~~~~a~al~-~~G 366 (656)
T PRK15174 295 IRTGQNEKAIPLLQQSL-ATHPDLPYVRAMYARALRQVGQYTAASDEFVQLARE------KGVTSKWNRYAAAALL-QAG 366 (656)
T ss_pred HHCCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CccchHHHHHHHHHHH-HCC
Confidence 88888888888888888 677888888888888888888888888888888887 4666666666677776 788
Q ss_pred CHHHHHHHHHHHHhhCCCc
Q 001486 449 SADNARDILIDGIKHVPNC 467 (1070)
Q Consensus 449 ~~e~Ar~iyekaL~~~P~~ 467 (1070)
++++|+++|+++++..|+.
T Consensus 367 ~~deA~~~l~~al~~~P~~ 385 (656)
T PRK15174 367 KTSEAESVFEHYIQARASH 385 (656)
T ss_pred CHHHHHHHHHHHHHhChhh
Confidence 8888888888888888774
No 21
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.88 E-value=2.2e-19 Score=221.99 Aligned_cols=362 Identities=13% Similarity=0.004 Sum_probs=272.3
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHcCCCCCchHHHHHHH
Q 001486 73 YGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYI 152 (1070)
Q Consensus 73 ~~lW~~ya~~e~~~~~~e~A~~lferAL~~~P~s~~lW~~y~~~~~~~~~~~~~ar~vferAL~~~p~~~~s~~lW~~yi 152 (1070)
..-.+..+.-....|++++|..+++..+...|.+.+.+..++...+.. |+++.|..+|++++...|. +...|....
T Consensus 42 ~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~-g~~~~A~~~l~~~l~~~P~---~~~a~~~la 117 (656)
T PRK15174 42 EQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLAS-SQPDAVLQVVNKLLAVNVC---QPEDVLLVA 117 (656)
T ss_pred ccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhc-CCHHHHHHHHHHHHHhCCC---ChHHHHHHH
Confidence 333445555566779999999999999999999999999999887777 9999999999999999887 456888888
Q ss_pred HHHHHcccHHHHHHHHHHHHccCCcCHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHhhcCCccccccchhhhHHHhh
Q 001486 153 EFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKD 232 (1070)
Q Consensus 153 ~fe~~~~~~~~a~~iy~raL~~p~~~~~~~~~~~~~~~~~~~eal~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~i~~ 232 (1070)
......|+++.|+..|++++.+.+.+...... .-. - ..
T Consensus 118 ~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~-la~---~-------------------l~------------------- 155 (656)
T PRK15174 118 SVLLKSKQYATVADLAEQAWLAFSGNSQIFAL-HLR---T-------------------LV------------------- 155 (656)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH-HHH---H-------------------HH-------------------
Confidence 88889999999999999999864443221111 000 0 00
Q ss_pred hcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 001486 233 LLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLY 312 (1070)
Q Consensus 233 ~~~~~~~~~~a~~~~~~~~~~~~~y~~a~~~~~~~~~fE~ai~~~~~~~~~~~p~~~~~W~~yi~~~~~~g~~~~a~~~y 312 (1070)
..+.+++|.. .|+..+. ..|+....|...+. +...|++++|+.+|
T Consensus 156 --------------------~~g~~~eA~~------~~~~~~~--------~~P~~~~a~~~~~~-l~~~g~~~eA~~~~ 200 (656)
T PRK15174 156 --------------------LMDKELQAIS------LARTQAQ--------EVPPRGDMIATCLS-FLNKSRLPEDHDLA 200 (656)
T ss_pred --------------------HCCChHHHHH------HHHHHHH--------hCCCCHHHHHHHHH-HHHcCCHHHHHHHH
Confidence 0000111212 1222211 22333445544433 45689999999999
Q ss_pred HHHhccCCC-CHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhhhchHHHHHHHHHHHHhCCHHH----HHHHHHHHhhc
Q 001486 313 ERCLIPCAD-YPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSA----ARAAFPESYID 387 (1070)
Q Consensus 313 erAL~~~p~-~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~e----A~~~~~~al~~ 387 (1070)
++++...|. ....+..++..+...|++++|+..|++++.. .|+.+.++..+|.++...|++++ |+..|++++ .
T Consensus 201 ~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~-~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al-~ 278 (656)
T PRK15174 201 RALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR-GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHAL-Q 278 (656)
T ss_pred HHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHH-h
Confidence 999887653 3444455677888899999999999999987 67778889999999999999885 799999998 6
Q ss_pred cChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCc
Q 001486 388 SDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNC 467 (1070)
Q Consensus 388 ~~p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~g~~e~Ar~iyekaL~~~P~~ 467 (1070)
.+|++..+|..++.++...|++++|+.+|+++++. .|..+.++..+|.++. ..|++++|+..|+++++..|+.
T Consensus 279 l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l------~P~~~~a~~~La~~l~-~~G~~~eA~~~l~~al~~~P~~ 351 (656)
T PRK15174 279 FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT------HPDLPYVRAMYARALR-QVGQYTAASDEFVQLAREKGVT 351 (656)
T ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCccc
Confidence 78888999999999999999999999999999998 6888899999999988 8999999999999999999988
Q ss_pred HHHHHHHHHHHHHcCCCcchhHHHHHHHHHhccCCcccccCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Q 001486 468 KLLLEELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQHIKLFPHT 547 (1070)
Q Consensus 468 ~~lw~~y~~~e~~~g~~~~~~~ar~l~ekAl~~~~~~s~~l~~~~~~~l~~~~~~~e~~~G~~~~a~~~~~ra~~~~p~~ 547 (1070)
..++...+......|+.+. +...|++++...|+ .. ...++++...|.+++...+..
T Consensus 352 ~~~~~~~a~al~~~G~~de---A~~~l~~al~~~P~--------~~-------------~~~~~ea~~~~~~~~~~~~~~ 407 (656)
T PRK15174 352 SKWNRYAAAALLQAGKTSE---AESVFEHYIQARAS--------HL-------------PQSFEEGLLALDGQISAVNLP 407 (656)
T ss_pred hHHHHHHHHHHHHCCCHHH---HHHHHHHHHHhChh--------hc-------------hhhHHHHHHHHHHHHHhcCCc
Confidence 7655556666777787655 56899999875442 11 123346777777777777554
Q ss_pred c
Q 001486 548 V 548 (1070)
Q Consensus 548 ~ 548 (1070)
.
T Consensus 408 ~ 408 (656)
T PRK15174 408 P 408 (656)
T ss_pred c
Confidence 4
No 22
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.88 E-value=8.5e-19 Score=221.06 Aligned_cols=400 Identities=11% Similarity=0.025 Sum_probs=264.2
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcC
Q 001486 25 GLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSAT 104 (1070)
Q Consensus 25 ~le~~l~~nP~s~~~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P~s~~lW~~ya~~e~~~~~~e~A~~lferAL~~~P 104 (1070)
.+++++..+|.+..+|..++..+... +++++|..+|+++|+..|.+..+|..++......+++++|+.++++++...|
T Consensus 37 ~~~~~~~~~~~~a~~~~~lA~~~~~~--g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P 114 (765)
T PRK10049 37 VYNRYRVHMQLPARGYAAVAVAYRNL--KQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAP 114 (765)
T ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 45555555666666676666666665 6667777777777777777777777666666666677777777777777777
Q ss_pred CCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHcccHHHHHHHHHHHHccCCcCHHHHHH
Q 001486 105 YSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYD 184 (1070)
Q Consensus 105 ~s~~lW~~y~~~~~~~~~~~~~ar~vferAL~~~p~~~~s~~lW~~yi~fe~~~~~~~~a~~iy~raL~~p~~~~~~~~~ 184 (1070)
.+.. |..++..+... |+.++|..+|+++++..|. ...+|..++......+..+.|.+.+++++..|..
T Consensus 115 ~~~~-~~~la~~l~~~-g~~~~Al~~l~~al~~~P~---~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~------- 182 (765)
T PRK10049 115 DKAN-LLALAYVYKRA-GRHWDELRAMTQALPRAPQ---TQQYPTEYVQALRNNRLSAPALGAIDDANLTPAE------- 182 (765)
T ss_pred CCHH-HHHHHHHHHHC-CCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHH-------
Confidence 7776 66666666665 6677777777777766555 3455555666555556666666666655543310
Q ss_pred HHHHHHHHHHHHhhhcchhhHHHHHHHhhcCCccccccchhhhHHHhhhcCcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001486 185 SFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLD 264 (1070)
Q Consensus 185 ~~~~~~~~~~eal~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~i~~~~~~~~~~~~a~~~~~~~~~~~~~y~~a~~~~ 264 (1070)
...+.... . ...+ .-.+..... ....|.. ..
T Consensus 183 --~~~l~~~~-~------------~~~~-r~~~~~~~~------------------------------~~~r~~~---ad 213 (765)
T PRK10049 183 --KRDLEADA-A------------AELV-RLSFMPTRS------------------------------EKERYAI---AD 213 (765)
T ss_pred --HHHHHHHH-H------------HHHH-HhhcccccC------------------------------hhHHHHH---HH
Confidence 00000000 0 0000 000000000 0000100 01
Q ss_pred HHHHHHHHhhcccCCCCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC---CCCHHHHHHHHHHHHhhCChhH
Q 001486 265 EKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPC---ADYPEFWMRYVDFMESKGGREI 341 (1070)
Q Consensus 265 ~~~~~fE~ai~~~~~~~~~~~p~~~~~W~~yi~~~~~~g~~~~a~~~yerAL~~~---p~~~~lW~~ya~~l~~~g~~e~ 341 (1070)
+.+..|+..++. +.......+.....+...+..+...|++++|+..|++++... |.+..+|+ +.++...|++++
T Consensus 214 ~Al~~~~~ll~~-~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~l--a~~yl~~g~~e~ 290 (765)
T PRK10049 214 RALAQYDALEAL-WHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWV--ASAYLKLHQPEK 290 (765)
T ss_pred HHHHHHHHHHhh-cccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHH--HHHHHhcCCcHH
Confidence 223344444421 000111122333344443333356689999999999999864 55666674 778899999999
Q ss_pred HHHHHHHHHHHHhhhc----hHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCh---------------hhHHHHHHHHHH
Q 001486 342 ASYALDRATQIFLKRL----PVIHLFNARYKEQIGDTSAARAAFPESYIDSDS---------------RFIEKVTFKANM 402 (1070)
Q Consensus 342 A~~il~rAl~~~~~~~----p~i~~~~a~~e~~~g~~~eA~~~~~~al~~~~p---------------~~~~~w~~~a~l 402 (1070)
|+.+|++++.. .+.. ...+..++..+...|++++|+.+++++.. ..| ....++..++.+
T Consensus 291 A~~~l~~~l~~-~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~-~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~ 368 (765)
T PRK10049 291 AQSILTELFYH-PETIADLSDEELADLFYSLLESENYPGALTVTAHTIN-NSPPFLRLYGSPTSIPNDDWLQGQSLLSQV 368 (765)
T ss_pred HHHHHHHHhhc-CCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhh-cCCceEeecCCCCCCCCchHHHHHHHHHHH
Confidence 99999998875 3332 13344455556889999999999999873 332 234567788889
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcC
Q 001486 403 ERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLLLEELIKFTMVHG 482 (1070)
Q Consensus 403 e~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~g~~e~Ar~iyekaL~~~P~~~~lw~~y~~~e~~~g 482 (1070)
+...|++++|+++|++++.. .|....+++.+|.++. ..|++++|+++|+++++.+|++..++...+......|
T Consensus 369 l~~~g~~~eA~~~l~~al~~------~P~n~~l~~~lA~l~~-~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~ 441 (765)
T PRK10049 369 AKYSNDLPQAEMRARELAYN------APGNQGLRIDYASVLQ-ARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQ 441 (765)
T ss_pred HHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhC
Confidence 99999999999999999998 6888999999999998 9999999999999999999999999999999888888
Q ss_pred CCcchhHHHHHHHHHhccCC
Q 001486 483 GRSHISIVDAVISNALYSRP 502 (1070)
Q Consensus 483 ~~~~~~~ar~l~ekAl~~~~ 502 (1070)
+... |..++++++...|
T Consensus 442 ~~~~---A~~~~~~ll~~~P 458 (765)
T PRK10049 442 EWRQ---MDVLTDDVVAREP 458 (765)
T ss_pred CHHH---HHHHHHHHHHhCC
Confidence 7655 6699999997655
No 23
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.87 E-value=6.9e-18 Score=213.12 Aligned_cols=494 Identities=10% Similarity=-0.020 Sum_probs=324.2
Q ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 001486 23 KQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQS 102 (1070)
Q Consensus 23 ~~~le~~l~~nP~s~~~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P~s~~lW~~ya~~e~~~~~~e~A~~lferAL~~ 102 (1070)
...|+++++.+|.+..+++.+++++... ++.++|+..++++++.+|.+..++..++.+ +++++|..+|++.++.
T Consensus 64 ~~~l~~Al~~dP~n~~~~~~LA~~yl~~--g~~~~A~~~~~kAv~ldP~n~~~~~~La~i----~~~~kA~~~ye~l~~~ 137 (987)
T PRK09782 64 IREFEYIHQQVPDNIPLTLYLAEAYRHF--GHDDRARLLLEDQLKRHPGDARLERSLAAI----PVEVKSVTTVEELLAQ 137 (987)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHhcCcccHHHHHHHHHh----ccChhHHHHHHHHHHh
Confidence 4489999999999999999999998888 999999999999999999999888887665 7889999999999999
Q ss_pred cCCCHHHHHHHHHHH-----HhhCCChhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHcccHHHHHHHHHHHHccCCc
Q 001486 103 ATYSVDVWFHYCSLS-----MSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSK 177 (1070)
Q Consensus 103 ~P~s~~lW~~y~~~~-----~~~~~~~~~ar~vferAL~~~p~~~~s~~lW~~yi~fe~~~~~~~~a~~iy~raL~~p~~ 177 (1070)
.|.+.++....+..+ +.. ...+.+.++++ ++......+...+.....++....++++.+.++|.+.++....
T Consensus 138 ~P~n~~~~~~la~~~~~~~~l~y-~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl 214 (987)
T PRK09782 138 QKACDAVPTLRCRSEVGQNALRL-AQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTL 214 (987)
T ss_pred CCCChhHHHHHHHHhhccchhhh-hhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCC
Confidence 999998777766651 111 23466666665 4444433222234444466666677777777777777654222
Q ss_pred CHHHH---HHHHHHHHHHHHHHhhhcc-----------------------hhhH----------------HHHHHHh-hc
Q 001486 178 KLHHY---YDSFKKLAGAWKEELECES-----------------------DSAM----------------EFQSELV-LE 214 (1070)
Q Consensus 178 ~~~~~---~~~~~~~~~~~~eal~~~~-----------------------~~~~----------------~~~~~~~-~~ 214 (1070)
+.... -..|...++. ++++.... +.+. ..|...+ ..
T Consensus 215 ~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~ 293 (987)
T PRK09782 215 SAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKY 293 (987)
T ss_pred CHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhc
Confidence 11111 0111110000 00000000 0000 0000000 00
Q ss_pred C--------Ccccccc---------------chhhhHHHhhhcC--cc--------------hhHHHHHHH---------
Q 001486 215 G--------EVPAYYK---------------DDETSSVIKDLLD--PS--------------VDLVRSKAI--------- 246 (1070)
Q Consensus 215 ~--------~l~~~~~---------------~~e~~~~i~~~~~--~~--------------~~~~~a~~~--------- 246 (1070)
+ .+...+. ....+.....+.+ .. +...++...
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~ 373 (987)
T PRK09782 294 SANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEP 373 (987)
T ss_pred cCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCC
Confidence 0 0000000 0000000001111 00 000011000
Q ss_pred --------HHHHHHHHHHHHHHHHHHHHHH------------------HHHHhhc-------------------------
Q 001486 247 --------QKYRFIGEQIYKEASQLDEKIN------------------CFENLIR------------------------- 275 (1070)
Q Consensus 247 --------~~~~~~~~~~y~~a~~~~~~~~------------------~fE~ai~------------------------- 275 (1070)
..+..+..+.+++|...++..- .|.....
T Consensus 374 ~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 453 (987)
T PRK09782 374 ANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQ 453 (987)
T ss_pred CCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhh
Confidence 1111122222333333221110 0111000
Q ss_pred --------ccCCCCCCCChH--HHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhCChhHHHHH
Q 001486 276 --------RPYFHVKPLDDI--QLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYA 345 (1070)
Q Consensus 276 --------~~~~~~~~~~p~--~~~~W~~yi~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~i 345 (1070)
..+....+..|. +...|..++.++.. +++.+|+.+|.+++...|... ..+.++..+...|++++|+..
T Consensus 454 ~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~ 531 (987)
T PRK09782 454 LPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAA 531 (987)
T ss_pred hhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHH
Confidence 000011223455 77889999988876 788899999999999888754 366667777899999999999
Q ss_pred HHHHHHHHhhhchHHHHHHHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 001486 346 LDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAE 425 (1070)
Q Consensus 346 l~rAl~~~~~~~p~i~~~~a~~e~~~g~~~eA~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~ 425 (1070)
|++++.. .+ .+..|+..+.++...|++++|..+|.+++ ...|....++..++....+.|++++|+..|+++++.
T Consensus 532 ~rka~~~-~p-~~~a~~~la~all~~Gd~~eA~~~l~qAL-~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--- 605 (987)
T PRK09782 532 WQKISLH-DM-SNEDLLAAANTAQAAGNGAARDRWLQQAE-QRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--- 605 (987)
T ss_pred HHHHhcc-CC-CcHHHHHHHHHHHHCCCHHHHHHHHHHHH-hcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh---
Confidence 9998764 22 23467788888899999999999999998 566766666555555555669999999999999998
Q ss_pred hccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCCcchhHHHHHHHHHhccCCccc
Q 001486 426 QRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLLLEELIKFTMVHGGRSHISIVDAVISNALYSRPDVL 505 (1070)
Q Consensus 426 ~~~~~~~~~l~i~~A~~~~~~~g~~e~Ar~iyekaL~~~P~~~~lw~~y~~~e~~~g~~~~~~~ar~l~ekAl~~~~~~s 505 (1070)
.|. +.+|+++|.++. ..|++++|..+|+++++..|++..++..++.+....|+.+. +..+|++|+...|
T Consensus 606 ---~P~-~~a~~~LA~~l~-~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~ee---Ai~~l~~AL~l~P--- 674 (987)
T PRK09782 606 ---APS-ANAYVARATIYR-QRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQ---SREMLERAHKGLP--- 674 (987)
T ss_pred ---CCC-HHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH---HHHHHHHHHHhCC---
Confidence 565 889999999998 99999999999999999999999999999999998887655 6689999997544
Q ss_pred ccCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcccc
Q 001486 506 KVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQHIKLFPHTVRTA 551 (1070)
Q Consensus 506 ~~l~~~~~~~l~~~~~~~e~~~G~~~~a~~~~~ra~~~~p~~~~~~ 551 (1070)
++ ..++..........|++++|..+|++++++.|+.+...
T Consensus 675 -----~~-~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~ 714 (987)
T PRK09782 675 -----DD-PALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALIT 714 (987)
T ss_pred -----CC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhh
Confidence 33 45677777888899999999999999999999987743
No 24
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=99.86 E-value=1.3e-17 Score=184.65 Aligned_cols=444 Identities=13% Similarity=0.141 Sum_probs=258.2
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHhc
Q 001486 25 GLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLC-SIDKVVEVFERAVQSA 103 (1070)
Q Consensus 25 ~le~~l~~nP~s~~~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P~s~~lW~~ya~~e~~~~-~~e~A~~lferAL~~~ 103 (1070)
.|..++.+.+.|+++|..|+.++++. +...+...+|..+|.++|+++++|+..+.++..-+ +++.|+.+|.|+|..+
T Consensus 93 lyr~at~rf~~D~~lW~~yi~f~kk~--~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~n 170 (568)
T KOG2396|consen 93 LYRRATNRFNGDVKLWLSYIAFCKKK--KTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFN 170 (568)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHh--cchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcC
Confidence 68899999999999999999999887 77888999999999999999999999999987765 4899999999999999
Q ss_pred CCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHcccHHHHHHHHHHHH---ccCCcCH-
Q 001486 104 TYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTL---RFPSKKL- 179 (1070)
Q Consensus 104 P~s~~lW~~y~~~~~~~~~~~~~ar~vferAL~~~p~~~~s~~lW~~yi~fe~~~~~~~~a~~iy~raL---~~p~~~~- 179 (1070)
|.+++||..|.++++.. +.++..|-.. +|.+.. +. . .+.+ +.+.+-.++.-.+ +.+....
T Consensus 171 pdsp~Lw~eyfrmEL~~------~~Kl~~rr~~-~g~~~~--~~--~-~eie----~ge~~~~~~~~s~~~~~~~~k~~e 234 (568)
T KOG2396|consen 171 PDSPKLWKEYFRMELMY------AEKLRNRREE-LGLDSS--DK--D-EEIE----RGELAWINYANSVDIIKGAVKSVE 234 (568)
T ss_pred CCChHHHHHHHHHHHHH------HHHHHHHHHH-hccccc--hh--H-HHHH----HHHHHHHhhccchhhhhcchhhcc
Confidence 99999999999998766 4444433322 233221 11 0 1111 1111212211111 1111100
Q ss_pred ---HHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHhhcCCccc--cccc---hhhhHHHhhhcCcchhHHHHHHHHHHHH
Q 001486 180 ---HHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPA--YYKD---DETSSVIKDLLDPSVDLVRSKAIQKYRF 251 (1070)
Q Consensus 180 ---~~~~~~~~~~~~~~~eal~~~~~~~~~~~~~~~~~~~l~~--~~~~---~e~~~~i~~~~~~~~~~~~a~~~~~~~~ 251 (1070)
...++ +.+++.+.+ ...+..+.... .+++ .++............+ .
T Consensus 235 ~~~~~~~d----~~kel~k~i-----------~d~~~~~~~~np~~~~~laqr~l~i~~~tdl~~~~~--~--------- 288 (568)
T KOG2396|consen 235 LSVAEKFD----FLKELQKNI-----------IDDLQSKAPDNPLLWDDLAQRELEILSQTDLQHTDN--Q--------- 288 (568)
T ss_pred hHHHHHHH----HHHHHHHHH-----------HHHHhccCCCCCccHHHHHHHHHHHHHHhhccchhh--h---------
Confidence 00011 111111100 00000000000 0000 0000000000000000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCChHHHHHHHHHHHHHHHcC------CHHHHHHHHHHHhccCCCCHHH
Q 001486 252 IGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQG------DFDWVVKLYERCLIPCADYPEF 325 (1070)
Q Consensus 252 ~~~~~y~~a~~~~~~~~~fE~ai~~~~~~~~~~~p~~~~~W~~yi~~~~~~g------~~~~a~~~yerAL~~~p~~~~l 325 (1070)
... +..+.+.......||+++.. -....+|..|+.++...- .+.....+|+++.........+
T Consensus 289 -~~~-~~~~~k~s~~~~v~ee~v~~---------l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~ 357 (568)
T KOG2396|consen 289 -AKA-VEVGSKESRCCAVYEEAVKT---------LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECL 357 (568)
T ss_pred -hhc-hhcchhHHHHHHHHHHHHHH---------hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccch
Confidence 000 11112223344667777642 123468999998876432 3556788899888766555555
Q ss_pred HHHHHHHHHhhCChhHHHHHHHHHHHHHhhhchHHHHHHHHHHHHh-CCHHHHHHHHHHHh----hccChhhHHHHHHHH
Q 001486 326 WMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQI-GDTSAARAAFPESY----IDSDSRFIEKVTFKA 400 (1070)
Q Consensus 326 W~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~-g~~~eA~~~~~~al----~~~~p~~~~~w~~~a 400 (1070)
.-.|+..+.......+|+++-.+.+.-...+...+|+.....+.+. .++. -+|..+. ..+...++..|....
T Consensus 358 ~~~ys~~~l~~~t~~~~r~~a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q---~~f~~l~n~~r~~~~s~~~~~w~s~~ 434 (568)
T KOG2396|consen 358 YKQYSVLLLCLNTLNEAREVAVKLTTELFRDSGKMWQLKLQVLIESKSDFQ---MLFEELFNHLRKQVCSELLISWASAS 434 (568)
T ss_pred HHHHHHHHHHHhccchHhHHHHHhhHHHhcchHHHHHHHHHHHHhhcchhH---HHHHHHHHHHHHHhcchhHHHHHHHh
Confidence 5556555554445556666665555322344566787766655432 2222 2222221 111223333444433
Q ss_pred HHHHHcCC-HH-HHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 001486 401 NMERRLGN-FV-AACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLLLEELIKFT 478 (1070)
Q Consensus 401 ~le~~~g~-~~-~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~g~~e~Ar~iyekaL~~~P~~~~lw~~y~~~e 478 (1070)
.|+ +. ....++-.|+..+. ..+......-|+.| ++ +.|.+.+||++|.+...+-|.+.+++...+.||
T Consensus 435 -----~~dsl~~~~~~~Ii~a~~s~~-~~~~~tl~s~~l~~---~~-e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e 504 (568)
T KOG2396|consen 435 -----EGDSLQEDTLDLIISALLSVI-GADSVTLKSKYLDW---AY-ESGGYKKARKVYKSLQELPPFSLDLFRKMIQFE 504 (568)
T ss_pred -----hccchhHHHHHHHHHHHHHhc-CCceeehhHHHHHH---HH-HhcchHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 122 21 22233333333321 11122334445544 45 899999999999999999999999999999999
Q ss_pred HHcCCCcchhHHHHHHHHHhccCCcccccCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 001486 479 MVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQHIKLFPH 546 (1070)
Q Consensus 479 ~~~g~~~~~~~ar~l~ekAl~~~~~~s~~l~~~~~~~l~~~~~~~e~~~G~~~~a~~~~~ra~~~~p~ 546 (1070)
....... +..+|.+|++|+..+. ...+||..|+.+|..+|..+.+--+|.||.+.+-.
T Consensus 505 ~~~~sc~-l~~~r~~yd~a~~~fg---------~d~~lw~~y~~~e~~~g~~en~~~~~~ra~ktl~~ 562 (568)
T KOG2396|consen 505 KEQESCN-LANIREYYDRALREFG---------ADSDLWMDYMKEELPLGRPENCGQIYWRAMKTLQG 562 (568)
T ss_pred hhHhhcC-chHHHHHHHHHHHHhC---------CChHHHHHHHHhhccCCCcccccHHHHHHHHhhCh
Confidence 8875544 5568999999996432 23689999999999999999999999999998744
No 25
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.85 E-value=6.3e-18 Score=213.22 Aligned_cols=423 Identities=9% Similarity=-0.008 Sum_probs=300.8
Q ss_pred hCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcCCCHHHHH
Q 001486 32 EGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWF 111 (1070)
Q Consensus 32 ~nP~s~~~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P~s~~lW~~ya~~e~~~~~~e~A~~lferAL~~~P~s~~lW~ 111 (1070)
.+|.-+.-|+.++.. . ++.++|..+|++++...|.....|..++..+...+++++|..+|+++|...|.+.++|.
T Consensus 13 ~~~~~~~d~~~ia~~---~--g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~ 87 (765)
T PRK10049 13 LSNNQIADWLQIALW---A--GQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQR 87 (765)
T ss_pred CCHHHHHHHHHHHHH---c--CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 345556667666653 2 78999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCChhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHcccHHHHHHHHHHHHccCCcCHHHHHHHHHHHHH
Q 001486 112 HYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAG 191 (1070)
Q Consensus 112 ~y~~~~~~~~~~~~~ar~vferAL~~~p~~~~s~~lW~~yi~fe~~~~~~~~a~~iy~raL~~p~~~~~~~~~~~~~~~~ 191 (1070)
.++..+... +++++|+..++++++..|.+ .. |..+.......++.+.|...|++++...+.+....+. +.....
T Consensus 88 ~la~~l~~~-g~~~eA~~~l~~~l~~~P~~---~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~-la~~l~ 161 (765)
T PRK10049 88 GLILTLADA-GQYDEALVKAKQLVSGAPDK---AN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTE-YVQALR 161 (765)
T ss_pred HHHHHHHHC-CCHHHHHHHHHHHHHhCCCC---HH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHH
Confidence 999999988 99999999999999988764 45 8888888889999999999999999865554333222 111111
Q ss_pred H---HHHHhhhcchhhHHHHHHHhhcCCccccccchhhhHHHhhhcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001486 192 A---WKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKIN 268 (1070)
Q Consensus 192 ~---~~eal~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~i~~~~~~~~~~~~a~~~~~~~~~~~~~y~~a~~~~~~~~ 268 (1070)
. .++++. .+..... .+.. ....+..
T Consensus 162 ~~~~~e~Al~------------------------------~l~~~~~-~p~~-----------------~~~l~~~---- 189 (765)
T PRK10049 162 NNRLSAPALG------------------------------AIDDANL-TPAE-----------------KRDLEAD---- 189 (765)
T ss_pred HCCChHHHHH------------------------------HHHhCCC-CHHH-----------------HHHHHHH----
Confidence 0 000000 0000000 0000 0000000
Q ss_pred HHHHhhcccCCCCCCCChHHHHHHHHHHHHHHHcCCH---HHHHHHHHHHhccCCCCHH-------HHHHHHHHHHhhCC
Q 001486 269 CFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDF---DWVVKLYERCLIPCADYPE-------FWMRYVDFMESKGG 338 (1070)
Q Consensus 269 ~fE~ai~~~~~~~~~~~p~~~~~W~~yi~~~~~~g~~---~~a~~~yerAL~~~p~~~~-------lW~~ya~~l~~~g~ 338 (1070)
+....+...+.......+.+ ++|+..|++++...+.++. +++..+..+...|+
T Consensus 190 -----------------~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~ 252 (765)
T PRK10049 190 -----------------AAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDR 252 (765)
T ss_pred -----------------HHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhh
Confidence 00000000000000111223 6788899999865433322 23332223456689
Q ss_pred hhHHHHHHHHHHHHHhhhchH-HHHHHHHHHHHhCCHHHHHHHHHHHhhccChhh----HHHHHHHHHHHHHcCCHHHHH
Q 001486 339 REIASYALDRATQIFLKRLPV-IHLFNARYKEQIGDTSAARAAFPESYIDSDSRF----IEKVTFKANMERRLGNFVAAC 413 (1070)
Q Consensus 339 ~e~A~~il~rAl~~~~~~~p~-i~~~~a~~e~~~g~~~eA~~~~~~al~~~~p~~----~~~w~~~a~le~~~g~~~~A~ 413 (1070)
+++|+..|++++.. .+..|. .....+.++...|++++|+.+|++++ ..++.. ...+..++.++.+.|++++|+
T Consensus 253 ~~eA~~~~~~ll~~-~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l-~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~ 330 (765)
T PRK10049 253 YKDVISEYQRLKAE-GQIIPPWAQRWVASAYLKLHQPEKAQSILTELF-YHPETIADLSDEELADLFYSLLESENYPGAL 330 (765)
T ss_pred HHHHHHHHHHhhcc-CCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHh-hcCCCCCCCChHHHHHHHHHHHhcccHHHHH
Confidence 99999999998875 222332 23334778889999999999999988 444433 345566666667889999999
Q ss_pred HHHHHHHHHHHhhc-------cCCC--cHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCC
Q 001486 414 DTYKEALETAAEQR-------KFHT--LPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLLLEELIKFTMVHGGR 484 (1070)
Q Consensus 414 ~vyekal~~~~~~~-------~~~~--~~~l~i~~A~~~~~~~g~~e~Ar~iyekaL~~~P~~~~lw~~y~~~e~~~g~~ 484 (1070)
.+|+++++..++.. ..|. ...++..+|.++. ..|++++|+++|++++...|++..+|..++.+....|+.
T Consensus 331 ~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~-~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~ 409 (765)
T PRK10049 331 TVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAK-YSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWP 409 (765)
T ss_pred HHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Confidence 99999998732110 0112 2356778888887 899999999999999999999999999999999999987
Q ss_pred cchhHHHHHHHHHhccCCcccccCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcc
Q 001486 485 SHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQHIKLFPHTVR 549 (1070)
Q Consensus 485 ~~~~~ar~l~ekAl~~~~~~s~~l~~~~~~~l~~~~~~~e~~~G~~~~a~~~~~ra~~~~p~~~~ 549 (1070)
+. +..+|++|+...| ++ ..++...+......|+++.|.++++++++..|+++.
T Consensus 410 ~~---A~~~l~~al~l~P--------d~-~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~ 462 (765)
T PRK10049 410 RA---AENELKKAEVLEP--------RN-INLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPG 462 (765)
T ss_pred HH---HHHHHHHHHhhCC--------CC-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH
Confidence 65 6699999997544 33 346667777888999999999999999999999764
No 26
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.83 E-value=4.7e-19 Score=213.56 Aligned_cols=251 Identities=17% Similarity=0.219 Sum_probs=222.0
Q ss_pred HHHHHhhcccCCCCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc-CCC----CHHHHHHHHHHHHhhCChhHH
Q 001486 268 NCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIP-CAD----YPEFWMRYVDFMESKGGREIA 342 (1070)
Q Consensus 268 ~~fE~ai~~~~~~~~~~~p~~~~~W~~yi~~~~~~g~~~~a~~~yerAL~~-~p~----~~~lW~~ya~~l~~~g~~e~A 342 (1070)
..||+.++ -+|+..-.|++|+.|..+.++.+.|+.+++|||.. ++. ...+|+.|..+....|.-+..
T Consensus 1445 eDferlvr--------ssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl 1516 (1710)
T KOG1070|consen 1445 EDFERLVR--------SSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESL 1516 (1710)
T ss_pred HHHHHHHh--------cCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHH
Confidence 45666664 36888889999999999999999999999999964 322 347899999999999988999
Q ss_pred HHHHHHHHHHHhhhch-HHHHHHHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001486 343 SYALDRATQIFLKRLP-VIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALE 421 (1070)
Q Consensus 343 ~~il~rAl~~~~~~~p-~i~~~~a~~e~~~g~~~eA~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~vyekal~ 421 (1070)
.++|+||+..+ +| .+|..+..++.+.+.+++|.++|+..++.+. ....+|+.|++++.+...-++|+.++.+||+
T Consensus 1517 ~kVFeRAcqyc---d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~ 1592 (1710)
T KOG1070|consen 1517 KKVFERACQYC---DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRALK 1592 (1710)
T ss_pred HHHHHHHHHhc---chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 99999999972 33 5888899999999999999999999997775 6789999999999999999999999999999
Q ss_pred HHHhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCCcchhHHHHHHHHHhccC
Q 001486 422 TAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLLLEELIKFTMVHGGRSHISIVDAVISNALYSR 501 (1070)
Q Consensus 422 ~~~~~~~~~~~~~l~i~~A~~~~~~~g~~e~Ar~iyekaL~~~P~~~~lw~~y~~~e~~~g~~~~~~~ar~l~ekAl~~~ 501 (1070)
.++. ...-++.-.+|.+++ .+||.+++|.+|+-.|..+|.-.++|..|++.++++|+.+. +|.+|||++..
T Consensus 1593 ~lPk----~eHv~~IskfAqLEF-k~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~---vR~lfeRvi~l- 1663 (1710)
T KOG1070|consen 1593 SLPK----QEHVEFISKFAQLEF-KYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKY---VRDLFERVIEL- 1663 (1710)
T ss_pred hcch----hhhHHHHHHHHHHHh-hcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHH---HHHHHHHHHhc-
Confidence 8532 235678899999998 99999999999999999999999999999999999998775 67999999963
Q ss_pred CcccccCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Q 001486 502 PDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQHIKLF 544 (1070)
Q Consensus 502 ~~~s~~l~~~~~~~l~~~~~~~e~~~G~~~~a~~~~~ra~~~~ 544 (1070)
++++...+-+|..|++||..+|+-+.+..+-.||.+.+
T Consensus 1664 -----~l~~kkmKfffKkwLeyEk~~Gde~~vE~VKarA~EYv 1701 (1710)
T KOG1070|consen 1664 -----KLSIKKMKFFFKKWLEYEKSHGDEKNVEYVKARAKEYV 1701 (1710)
T ss_pred -----CCChhHhHHHHHHHHHHHHhcCchhhHHHHHHHHHHHH
Confidence 67888999999999999999999999999998888765
No 27
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.82 E-value=2.8e-16 Score=198.66 Aligned_cols=234 Identities=12% Similarity=0.045 Sum_probs=199.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhhhchHHHHHHHHHHHHh
Q 001486 292 WHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQI 371 (1070)
Q Consensus 292 W~~yi~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~ 371 (1070)
...++..+...|++++|+..|++++...+. ...|+.++..+...|++++|...|++++.. .+....++...+......
T Consensus 512 ~L~lA~al~~~Gr~eeAi~~~rka~~~~p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l-~P~~~~l~~~La~~l~~~ 589 (987)
T PRK09782 512 HRAVAYQAYQVEDYATALAAWQKISLHDMS-NEDLLAAANTAQAAGNGAARDRWLQQAEQR-GLGDNALYWWLHAQRYIP 589 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhccCCC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCccHHHHHHHHHHHHhC
Confidence 444455556899999999999998876555 466899999999999999999999999987 344444444434444456
Q ss_pred CCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhcCCHH
Q 001486 372 GDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSAD 451 (1070)
Q Consensus 372 g~~~eA~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~g~~e 451 (1070)
|++++|+..|++++ .++|+ ..+|+.++.++.+.|++++|+.+|+++++. .|..+.++.++|.++. ..|+++
T Consensus 590 Gr~~eAl~~~~~AL-~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l------~Pd~~~a~~nLG~aL~-~~G~~e 660 (987)
T PRK09782 590 GQPELALNDLTRSL-NIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALEL------EPNNSNYQAALGYALW-DSGDIA 660 (987)
T ss_pred CCHHHHHHHHHHHH-HhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHH-HCCCHH
Confidence 99999999999999 77786 889999999999999999999999999999 7899999999999998 999999
Q ss_pred HHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCCcchhHHHHHHHHHhccCCcccccCChhhHHHHHHHHHHHHHHhCCHH
Q 001486 452 NARDILIDGIKHVPNCKLLLEELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTIH 531 (1070)
Q Consensus 452 ~Ar~iyekaL~~~P~~~~lw~~y~~~e~~~g~~~~~~~ar~l~ekAl~~~~~~s~~l~~~~~~~l~~~~~~~e~~~G~~~ 531 (1070)
+|+.+|+++++..|++..+|..++......|+.+. ++..|++|+...| ....+-..+..++..-++++
T Consensus 661 eAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~e---A~~~l~~Al~l~P---------~~a~i~~~~g~~~~~~~~~~ 728 (987)
T PRK09782 661 QSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAA---TQHYARLVIDDID---------NQALITPLTPEQNQQRFNFR 728 (987)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH---HHHHHHHHHhcCC---------CCchhhhhhhHHHHHHHHHH
Confidence 99999999999999999999999999999998766 5699999996544 23466778888888888999
Q ss_pred HHHHHHHHHHHhCCCCc
Q 001486 532 DIRNAWNQHIKLFPHTV 548 (1070)
Q Consensus 532 ~a~~~~~ra~~~~p~~~ 548 (1070)
.+.+.|.|+...-|++-
T Consensus 729 ~a~~~~~r~~~~~~~~~ 745 (987)
T PRK09782 729 RLHEEVGRRWTFSFDSS 745 (987)
T ss_pred HHHHHHHHHhhcCccch
Confidence 99999999999988864
No 28
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=4.6e-16 Score=171.44 Aligned_cols=432 Identities=13% Similarity=0.074 Sum_probs=289.0
Q ss_pred CcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChhHHHHHHH
Q 001486 53 DDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFK 132 (1070)
Q Consensus 53 ~~~~~a~~vyeraL~~~P~s~~lW~~ya~~e~~~~~~e~A~~lferAL~~~P~s~~lW~~y~~~~~~~~~~~~~ar~vfe 132 (1070)
+.+++|++.|..|++..|+-+-++-+.+.-+...|+++++++-.-+||++.|..++..+.-++-.... |+++++. |+
T Consensus 129 kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~l-g~~~eal--~D 205 (606)
T KOG0547|consen 129 KKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQL-GKFDEAL--FD 205 (606)
T ss_pred ccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhh-ccHHHHH--Hh
Confidence 78999999999999999998888999999999999999999999999999999888888777776665 6665442 22
Q ss_pred HHHHHcCCCCCchHHHHHHHHHHHHcccHHHHHHHHH--HHHccCCcCHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHH
Q 001486 133 RALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFV--QTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSE 210 (1070)
Q Consensus 133 rAL~~~p~~~~s~~lW~~yi~fe~~~~~~~~a~~iy~--raL~~p~~~~~~~~~~~~~~~~~~~eal~~~~~~~~~~~~~ 210 (1070)
--...+-.+|....+-.+.-+.++..+ ...+.+.|. |-=.+|....... .|..|.......
T Consensus 206 ~tv~ci~~~F~n~s~~~~~eR~Lkk~a-~~ka~e~~k~nr~p~lPS~~fi~s--yf~sF~~~~~~~-------------- 268 (606)
T KOG0547|consen 206 VTVLCILEGFQNASIEPMAERVLKKQA-MKKAKEKLKENRPPVLPSATFIAS--YFGSFHADPKPL-------------- 268 (606)
T ss_pred hhHHHHhhhcccchhHHHHHHHHHHHH-HHHHHHhhcccCCCCCCcHHHHHH--HHhhcccccccc--------------
Confidence 211112112222233222223222221 223333333 1112332211110 011111110000
Q ss_pred HhhcCCccccccchhhhHHHhhhcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhcccCCCCCCCChHHH
Q 001486 211 LVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEK-INCFENLIRRPYFHVKPLDDIQL 289 (1070)
Q Consensus 211 ~~~~~~l~~~~~~~e~~~~i~~~~~~~~~~~~a~~~~~~~~~~~~~y~~a~~~~~~-~~~fE~ai~~~~~~~~~~~p~~~ 289 (1070)
...+..-.+..+...+ +.++. ....-|.++.+...+ ...++..+.. ..+...-..-.
T Consensus 269 ----~~~~~~ksDa~l~~~l-------------~~l~~---~~~e~Y~~a~~~~te~~~~~~~~~~~--n~~d~~le~~A 326 (606)
T KOG0547|consen 269 ----FDNKSDKSDAALAEAL-------------EALEK---GLEEGYLKAYDKATEECLGSESSLSV--NEIDAELEYMA 326 (606)
T ss_pred ----ccCCCccchhhHHHHH-------------HHHHh---hCchhHHHHHHHHHHHhhhhhhhccc--cccchhHHHHH
Confidence 0000000000000000 00000 011123333332211 1122221110 00000001223
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhhhchHHHHHHHHHHH
Q 001486 290 KNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKE 369 (1070)
Q Consensus 290 ~~W~~yi~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~ 369 (1070)
....-.+.|..-.|+...+...|.++|..+|....+++..+..|...++.++....|.+|..+ .|.+|.+|+..|.+..
T Consensus 327 ~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~l-dp~n~dvYyHRgQm~f 405 (606)
T KOG0547|consen 327 EALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDL-DPENPDVYYHRGQMRF 405 (606)
T ss_pred HHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhc-CCCCCchhHhHHHHHH
Confidence 344445667677899999999999999999999999999999999999999999999999998 8889999999999999
Q ss_pred HhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhcCC
Q 001486 370 QIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGS 449 (1070)
Q Consensus 370 ~~g~~~eA~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~g~ 449 (1070)
-.+++++|..-|++++ .++|.++-.++.++-++.+.+.++++.+.|+.+++. +|.++++|..+|.++. ..++
T Consensus 406 lL~q~e~A~aDF~Kai-~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk------FP~~~Evy~~fAeiLt-Dqqq 477 (606)
T KOG0547|consen 406 LLQQYEEAIADFQKAI-SLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK------FPNCPEVYNLFAEILT-DQQQ 477 (606)
T ss_pred HHHHHHHHHHHHHHHh-hcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CCCCchHHHHHHHHHh-hHHh
Confidence 9999999999999999 899999999999999889999999999999999999 6999999999999998 9999
Q ss_pred HHHHHHHHHHHHhhCCC------cHHHHHHHHHHHHHcCCCcchhHHHHHHHHHhccCCcccccCChhhHHHHHHHHHHH
Q 001486 450 ADNARDILIDGIKHVPN------CKLLLEELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQF 523 (1070)
Q Consensus 450 ~e~Ar~iyekaL~~~P~------~~~lw~~y~~~e~~~g~~~~~~~ar~l~ekAl~~~~~~s~~l~~~~~~~l~~~~~~~ 523 (1070)
+++|.+.|++|+.+-|. ++..+..-+-+..+ -.+++..+..++++|+...| ..+--+.....|
T Consensus 478 Fd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q--wk~d~~~a~~Ll~KA~e~Dp---------kce~A~~tlaq~ 546 (606)
T KOG0547|consen 478 FDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ--WKEDINQAENLLRKAIELDP---------KCEQAYETLAQF 546 (606)
T ss_pred HHHHHHHHHHHHhhccccccccccchhhhhhhHhhhc--hhhhHHHHHHHHHHHHccCc---------hHHHHHHHHHHH
Confidence 99999999999999998 44333222222111 11334557799999996433 235567788899
Q ss_pred HHHhCCHHHHHHHHHHHHHhCCC
Q 001486 524 LDLCGTIHDIRNAWNQHIKLFPH 546 (1070)
Q Consensus 524 e~~~G~~~~a~~~~~ra~~~~p~ 546 (1070)
+...|++++|..++++++.+-..
T Consensus 547 ~lQ~~~i~eAielFEksa~lArt 569 (606)
T KOG0547|consen 547 ELQRGKIDEAIELFEKSAQLART 569 (606)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHh
Confidence 99999999999999998887543
No 29
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.77 E-value=5e-15 Score=175.34 Aligned_cols=243 Identities=14% Similarity=0.069 Sum_probs=194.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhhhchHHHHHHHHHH
Q 001486 289 LKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYK 368 (1070)
Q Consensus 289 ~~~W~~yi~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e 368 (1070)
+.+-++++.+++..+++..|...|...+..+|.+.+.++.++.+....+...+|...+..++.+ ...+|.+|-++|.++
T Consensus 496 lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~-d~~np~arsl~G~~~ 574 (1018)
T KOG2002|consen 496 LTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNI-DSSNPNARSLLGNLH 574 (1018)
T ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhc-ccCCcHHHHHHHHHH
Confidence 4557778889999999999999999999999999999999998888888899999999999987 677899999999998
Q ss_pred HHhCCHHHHHHHHHHHhhccCh-hhHHHHHHHHHHHH------------HcCCHHHHHHHHHHHHHHHHhhccCCCcHHH
Q 001486 369 EQIGDTSAARAAFPESYIDSDS-RFIEKVTFKANMER------------RLGNFVAACDTYKEALETAAEQRKFHTLPLL 435 (1070)
Q Consensus 369 ~~~g~~~eA~~~~~~al~~~~p-~~~~~w~~~a~le~------------~~g~~~~A~~vyekal~~~~~~~~~~~~~~l 435 (1070)
.....+..|.+-|.+.++.... ...-..+.+++++. +.+.+++|+.+|.++|.. .|.+-.+
T Consensus 575 l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~------dpkN~yA 648 (1018)
T KOG2002|consen 575 LKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRN------DPKNMYA 648 (1018)
T ss_pred HhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhc------Ccchhhh
Confidence 8888888888866666532211 12223344444332 234567777777777776 4555556
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCCcchhHHHHHHHHHhccCCcccccCChhhHHH
Q 001486 436 YVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLLLEELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVED 515 (1070)
Q Consensus 436 ~i~~A~~~~~~~g~~e~Ar~iyekaL~~~P~~~~lw~~y~~~e~~~g~~~~~~~ar~l~ekAl~~~~~~s~~l~~~~~~~ 515 (1070)
-...|-++. ..|++.+|+.||.+..+...+..++|++.+......|.+.. |-..|++|++++- .++..+
T Consensus 649 ANGIgiVLA-~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~---AIqmYe~~lkkf~-------~~~~~~ 717 (1018)
T KOG2002|consen 649 ANGIGIVLA-EKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRL---AIQMYENCLKKFY-------KKNRSE 717 (1018)
T ss_pred ccchhhhhh-hccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHH---HHHHHHHHHHHhc-------ccCCHH
Confidence 677788888 99999999999999998888889999999999888886544 6799999997542 344566
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcc
Q 001486 516 ISSLYLQFLDLCGTIHDIRNAWNQHIKLFPHTVR 549 (1070)
Q Consensus 516 l~~~~~~~e~~~G~~~~a~~~~~ra~~~~p~~~~ 549 (1070)
+....++...+.|.+.+++.+..+|+.+.|....
T Consensus 718 vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~ 751 (1018)
T KOG2002|consen 718 VLHYLARAWYEAGKLQEAKEALLKARHLAPSNTS 751 (1018)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccch
Confidence 7777777778889999999999999999999765
No 30
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.75 E-value=1.9e-14 Score=169.79 Aligned_cols=501 Identities=15% Similarity=0.095 Sum_probs=314.5
Q ss_pred chHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 001486 22 GKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQ 101 (1070)
Q Consensus 22 ~~~~le~~l~~nP~s~~~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P~s~~lW~~ya~~e~~~~~~e~A~~lferAL~ 101 (1070)
+...+.+.|+.+|.+..+|..++++++.. |+++++....-.|-..+|.+.++|+.++++-...++++.|+-+|.|||.
T Consensus 158 A~~i~~EvIkqdp~~~~ay~tL~~IyEqr--Gd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~ 235 (895)
T KOG2076|consen 158 AEEILMEVIKQDPRNPIAYYTLGEIYEQR--GDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQ 235 (895)
T ss_pred HHHHHHHHHHhCccchhhHHHHHHHHHHc--ccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 34589999999999999999999999998 9999999999999999999999999999999999999999999999999
Q ss_pred hcCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHcCCC-C--CchHHHHHHHHHHHHcccHHHHHHHHHHHHc-----
Q 001486 102 SATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKD-Y--LCHTMWDKYIEFEISQQRWSSLAQIFVQTLR----- 173 (1070)
Q Consensus 102 ~~P~s~~lW~~y~~~~~~~~~~~~~ar~vferAL~~~p~~-~--~s~~lW~~yi~fe~~~~~~~~a~~iy~raL~----- 173 (1070)
..|.+.++...++.++.++ |+...|...|.+++...|.. + ....||... +.....+..+.|.+++..++.
T Consensus 236 ~~p~n~~~~~ers~L~~~~-G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~-~~~~~~~~~e~a~~~le~~~s~~~~~ 313 (895)
T KOG2076|consen 236 ANPSNWELIYERSSLYQKT-GDLKRAMETFLQLLQLDPPVDIERIEDLIRRVA-HYFITHNERERAAKALEGALSKEKDE 313 (895)
T ss_pred cCCcchHHHHHHHHHHHHh-ChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHH-HHHHHhhHHHHHHHHHHHHHhhcccc
Confidence 9999999999999999999 99999999999999998821 1 023455433 333344444888888888875
Q ss_pred cCCcCHHHH---HHHHHHHHHHHHHHhh-----hcchhhHHHHHH-----HhhcCCccccccchhhhH---HHhhhcCcc
Q 001486 174 FPSKKLHHY---YDSFKKLAGAWKEELE-----CESDSAMEFQSE-----LVLEGEVPAYYKDDETSS---VIKDLLDPS 237 (1070)
Q Consensus 174 ~p~~~~~~~---~~~~~~~~~~~~eal~-----~~~~~~~~~~~~-----~~~~~~l~~~~~~~e~~~---~i~~~~~~~ 237 (1070)
....++..+ +.....+-..+..... ++++...-.+.+ ...-...+... ..++.. .++-+--+.
T Consensus 314 ~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~-s~~l~v~rl~icL~~L~~ 392 (895)
T KOG2076|consen 314 ASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKEL-SYDLRVIRLMICLVHLKE 392 (895)
T ss_pred ccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCC-CccchhHhHhhhhhcccc
Confidence 112222222 2222222111111100 000000000000 00000000000 000000 000000000
Q ss_pred hhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCC--CChHHHHHHHHHHHHHHHcCCHHHH
Q 001486 238 VDLVRSKAIQKY-------RFIGEQIYKEASQLDEKINCFENLIRRPYFHVKP--LDDIQLKNWHDYLSFAEKQGDFDWV 308 (1070)
Q Consensus 238 ~~~~~a~~~~~~-------~~~~~~~y~~a~~~~~~~~~fE~ai~~~~~~~~~--~~p~~~~~W~~yi~~~~~~g~~~~a 308 (1070)
.+ ....+..+ ......+|...-+.+..+..|..+++- +.... ..-.+..+|.+.+.++...|.+++|
T Consensus 393 ~e--~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~--l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A 468 (895)
T KOG2076|consen 393 RE--LLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRL--LSPITNREGYQNAFVWYKLARCYMELGEYEEA 468 (895)
T ss_pred cc--hHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHH--HHHHhcCccccchhhhHHHHHHHHHHhhHHHH
Confidence 00 00000000 011223333333444444455555431 10000 0112357999999999999999999
Q ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHh----hhc-----hHHHHHHHHHHHHhCCHHHHHH
Q 001486 309 VKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFL----KRL-----PVIHLFNARYKEQIGDTSAARA 379 (1070)
Q Consensus 309 ~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~----~~~-----p~i~~~~a~~e~~~g~~~eA~~ 379 (1070)
+..|+++|...|.+.++-+.++.++...|+.|+|.++++..+.- . +.+ ..+.+....++...|+.++-..
T Consensus 469 ~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~-D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~ 547 (895)
T KOG2076|consen 469 IEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINP-DGRNAEACAWEPERRILAHRCDILFQVGKREEFIN 547 (895)
T ss_pred HHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCC-CccchhhccccHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 99999999999999999999999999999999999999874421 1 001 1244444445555555443211
Q ss_pred ----HHHHH------------------------------------hhcc-----------Ch----------hhHHHHH-
Q 001486 380 ----AFPES------------------------------------YIDS-----------DS----------RFIEKVT- 397 (1070)
Q Consensus 380 ----~~~~a------------------------------------l~~~-----------~p----------~~~~~w~- 397 (1070)
++... +... ++ -+.+-|+
T Consensus 548 t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfe 627 (895)
T KOG2076|consen 548 TASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFE 627 (895)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHH
Confidence 11100 0000 00 0123353
Q ss_pred ---HHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHH-----HHHHHHHHHHhhcCCHHHHHHHHHHHHhh-----C
Q 001486 398 ---FKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPL-----LYVQFSRLTYTTTGSADNARDILIDGIKH-----V 464 (1070)
Q Consensus 398 ---~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~-----l~i~~A~~~~~~~g~~e~Ar~iyekaL~~-----~ 464 (1070)
.+.....+++.+.+|..+...|+.... +....+ -|+.++-.+ ..+++..|+...+-.+.. .
T Consensus 628 l~~e~i~~L~k~~r~qeAl~vv~~a~~~~~----f~~~~~~~k~l~~~~l~~s~--~~~d~~~a~~~lR~~i~~~~~~~~ 701 (895)
T KOG2076|consen 628 LFRELILSLAKLQRVQEALSVVFTALEAYI----FFQDSEIRKELQFLGLKASL--YARDPGDAFSYLRSVITQFQFYLD 701 (895)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhhhh----hhccHHHHHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHHHhhhhh
Confidence 344456677899999999999988631 112222 244444444 489999999999998887 5
Q ss_pred CCcHHHHHHHHHHHHHcCCCcchhHHHHHHHHHhccCCcccccCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Q 001486 465 PNCKLLLEELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQHIKLF 544 (1070)
Q Consensus 465 P~~~~lw~~y~~~e~~~g~~~~~~~ar~l~ekAl~~~~~~s~~l~~~~~~~l~~~~~~~e~~~G~~~~a~~~~~ra~~~~ 544 (1070)
+--..+|..+......+|.... -...+.+++.+++ ++...+...|.-+....|.+..|...|-|+....
T Consensus 702 ~~q~~l~n~~~s~~~~~~q~v~---~~R~~~~~~~~~~--------~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~ 770 (895)
T KOG2076|consen 702 VYQLNLWNLDFSYFSKYGQRVC---YLRLIMRLLVKNK--------DDTPPLALIYGHNLFVNASFKHALQEYMRAFRQN 770 (895)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhccCc--------cCCcceeeeechhHhhccchHHHHHHHHHHHHhC
Confidence 5556789876666666664433 2345555664433 3445677788888889999999999999999999
Q ss_pred CCCcc
Q 001486 545 PHTVR 549 (1070)
Q Consensus 545 p~~~~ 549 (1070)
|+++.
T Consensus 771 pd~Pl 775 (895)
T KOG2076|consen 771 PDSPL 775 (895)
T ss_pred CCCcH
Confidence 99876
No 31
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.74 E-value=6.7e-15 Score=172.19 Aligned_cols=301 Identities=14% Similarity=0.137 Sum_probs=164.9
Q ss_pred HHHHhCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHcCCCC-CchHHHHHHHHHHHHccc
Q 001486 82 HKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDY-LCHTMWDKYIEFEISQQR 160 (1070)
Q Consensus 82 ~e~~~~~~e~A~~lferAL~~~P~s~~lW~~y~~~~~~~~~~~~~ar~vferAL~~~p~~~-~s~~lW~~yi~fe~~~~~ 160 (1070)
.....+++++|..+|++++...|.++.+|..++.++... |++++|..+|++++...+... .....|...+......|+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRR-GEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHc-CcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 334556777777777777777777777777777777777 777777777777776422210 012345555666666777
Q ss_pred HHHHHHHHHHHHccCCcCHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHhhcCCccccccchhhhHHHhhhcCcchhH
Q 001486 161 WSSLAQIFVQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDL 240 (1070)
Q Consensus 161 ~~~a~~iy~raL~~p~~~~~~~~~~~~~~~~~~~eal~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~i~~~~~~~~~~ 240 (1070)
++.|.++|.+++........
T Consensus 123 ~~~A~~~~~~~l~~~~~~~~------------------------------------------------------------ 142 (389)
T PRK11788 123 LDRAEELFLQLVDEGDFAEG------------------------------------------------------------ 142 (389)
T ss_pred HHHHHHHHHHHHcCCcchHH------------------------------------------------------------
Confidence 78888888877763211100
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 001486 241 VRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCA 320 (1070)
Q Consensus 241 ~~a~~~~~~~~~~~~~y~~a~~~~~~~~~fE~ai~~~~~~~~~~~p~~~~~W~~yi~~~~~~g~~~~a~~~yerAL~~~p 320 (1070)
.+..++..+...|++++|+.+|++++...|
T Consensus 143 --------------------------------------------------~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 172 (389)
T PRK11788 143 --------------------------------------------------ALQQLLEIYQQEKDWQKAIDVAERLEKLGG 172 (389)
T ss_pred --------------------------------------------------HHHHHHHHHHHhchHHHHHHHHHHHHHhcC
Confidence 011111112223344444444444443333
Q ss_pred CC-----HHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhhhchHHHHHHHHHHHHhCCHHHHHHHHHHHhhccChhh-HH
Q 001486 321 DY-----PEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRF-IE 394 (1070)
Q Consensus 321 ~~-----~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~eA~~~~~~al~~~~p~~-~~ 394 (1070)
.+ ..+|..++..+...|++++|..+|+++++. .++....++.++.++...|++++|..+|++++ ...|.. ..
T Consensus 173 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~-~~~p~~~~~ 250 (389)
T PRK11788 173 DSLRVEIAHFYCELAQQALARGDLDAARALLKKALAA-DPQCVRASILLGDLALAQGDYAAAIEALERVE-EQDPEYLSE 250 (389)
T ss_pred CcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhH-CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHChhhHHH
Confidence 22 123444555555555555555555555554 33334455555555555566666666666555 223322 33
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHH
Q 001486 395 KVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLLLEEL 474 (1070)
Q Consensus 395 ~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~g~~e~Ar~iyekaL~~~P~~~~lw~~y 474 (1070)
+|..++.++...|++++|..+|+++++. .|.. .++..+|.++. ..|++++|+.+|+++++..|++..+...+
T Consensus 251 ~~~~l~~~~~~~g~~~~A~~~l~~~~~~------~p~~-~~~~~la~~~~-~~g~~~~A~~~l~~~l~~~P~~~~~~~l~ 322 (389)
T PRK11788 251 VLPKLMECYQALGDEAEGLEFLRRALEE------YPGA-DLLLALAQLLE-EQEGPEAAQALLREQLRRHPSLRGFHRLL 322 (389)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCc-hHHHHHHHHHH-HhCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 4555566666667777777777776665 2333 23366666665 67777777777777777777666443333
Q ss_pred HHHHHH--cCCCc-chhHHHHHHHHHhccCCc
Q 001486 475 IKFTMV--HGGRS-HISIVDAVISNALYSRPD 503 (1070)
Q Consensus 475 ~~~e~~--~g~~~-~~~~ar~l~ekAl~~~~~ 503 (1070)
..+... .|... .+..++..+++.+...|+
T Consensus 323 ~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 323 DYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 222211 22222 233455666666665554
No 32
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.74 E-value=8e-15 Score=171.50 Aligned_cols=293 Identities=12% Similarity=0.054 Sum_probs=219.6
Q ss_pred CcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHhhCCChhHHH
Q 001486 53 DDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYS----VDVWFHYCSLSMSTFEDPNDVR 128 (1070)
Q Consensus 53 ~~~~~a~~vyeraL~~~P~s~~lW~~ya~~e~~~~~~e~A~~lferAL~~~P~s----~~lW~~y~~~~~~~~~~~~~ar 128 (1070)
+++++|...|+++++.+|++..+|..++.++...|++++|..+|++++...+.. ...|..++..+... |++++|.
T Consensus 49 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~-g~~~~A~ 127 (389)
T PRK11788 49 EQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA-GLLDRAE 127 (389)
T ss_pred CChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC-CCHHHHH
Confidence 889999999999999999999999999999999999999999999999863322 25678888888888 9999999
Q ss_pred HHHHHHHHHcCCCCCchHHHHHHHHHHHHcccHHHHHHHHHHHHccCCcCHHHHHHHHHHHHHHHHHHhhhcchhhHHHH
Q 001486 129 RLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQ 208 (1070)
Q Consensus 129 ~vferAL~~~p~~~~s~~lW~~yi~fe~~~~~~~~a~~iy~raL~~p~~~~~~~~~~~~~~~~~~~eal~~~~~~~~~~~ 208 (1070)
.+|+++++..+. ....|..++......|+++.|..+|.++
T Consensus 128 ~~~~~~l~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~~------------------------------------- 167 (389)
T PRK11788 128 ELFLQLVDEGDF---AEGALQQLLEIYQQEKDWQKAIDVAERL------------------------------------- 167 (389)
T ss_pred HHHHHHHcCCcc---hHHHHHHHHHHHHHhchHHHHHHHHHHH-------------------------------------
Confidence 999999976433 2334433333333333333332222211
Q ss_pred HHHhhcCCccccccchhhhHHHhhhcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCChHH
Q 001486 209 SELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQ 288 (1070)
Q Consensus 209 ~~~~~~~~l~~~~~~~e~~~~i~~~~~~~~~~~~a~~~~~~~~~~~~~y~~a~~~~~~~~~fE~ai~~~~~~~~~~~p~~ 288 (1070)
++. .........
T Consensus 168 -----------------------------------------------------------------~~~---~~~~~~~~~ 179 (389)
T PRK11788 168 -----------------------------------------------------------------EKL---GGDSLRVEI 179 (389)
T ss_pred -----------------------------------------------------------------HHh---cCCcchHHH
Confidence 110 000012223
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhhhchHHHHHHHHHH
Q 001486 289 LKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYK 368 (1070)
Q Consensus 289 ~~~W~~yi~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e 368 (1070)
...|..++..+...|++++|+.+|++++...|.....|+.++.++...|++++|..+|++++.......+.++...+..+
T Consensus 180 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~ 259 (389)
T PRK11788 180 AHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECY 259 (389)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHH
Confidence 34567778888889999999999999999999999999999999999999999999999999862222245677778888
Q ss_pred HHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHh-hc
Q 001486 369 EQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYT-TT 447 (1070)
Q Consensus 369 ~~~g~~~eA~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~-~~ 447 (1070)
...|++++|...|.+++ ...|+. .++..++.++...|++++|+.+|+++++. .|....+...++..+.. ..
T Consensus 260 ~~~g~~~~A~~~l~~~~-~~~p~~-~~~~~la~~~~~~g~~~~A~~~l~~~l~~------~P~~~~~~~l~~~~~~~~~~ 331 (389)
T PRK11788 260 QALGDEAEGLEFLRRAL-EEYPGA-DLLLALAQLLEEQEGPEAAQALLREQLRR------HPSLRGFHRLLDYHLAEAEE 331 (389)
T ss_pred HHcCCHHHHHHHHHHHH-HhCCCc-hHHHHHHHHHHHhCCHHHHHHHHHHHHHh------CcCHHHHHHHHHHhhhccCC
Confidence 99999999999999998 556655 34578899999999999999999999998 46665554334433321 25
Q ss_pred CCHHHHHHHHHHHHh
Q 001486 448 GSADNARDILIDGIK 462 (1070)
Q Consensus 448 g~~e~Ar~iyekaL~ 462 (1070)
|+.++|..++++.++
T Consensus 332 g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 332 GRAKESLLLLRDLVG 346 (389)
T ss_pred ccchhHHHHHHHHHH
Confidence 577787777776664
No 33
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.73 E-value=1.6e-13 Score=162.89 Aligned_cols=469 Identities=13% Similarity=0.115 Sum_probs=317.6
Q ss_pred CCCCCCCcchHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHCCCCH-----HHHHHHHHHHHHhCC
Q 001486 14 EPNSPVGFGKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCY-----GYWRKYADHKARLCS 88 (1070)
Q Consensus 14 ~~~~~~~~~~~~le~~l~~nP~s~~~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P~s~-----~lW~~ya~~e~~~~~ 88 (1070)
++++.+++.+..|-..+...|.|+-..+.-+.+.-.. +++-.|..+|.++|...|... .+|+.+++ .+.
T Consensus 141 ~~~~~~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynk--kdY~~al~yyk~al~inp~~~aD~rIgig~Cf~k----l~~ 214 (1018)
T KOG2002|consen 141 EGDKSMDDADAQFHFVLKQSPDNILALLGKARIAYNK--KDYRGALKYYKKALRINPACKADVRIGIGHCFWK----LGM 214 (1018)
T ss_pred cCCccHHHHHHHHHHHHhhCCcchHHHHHHHHHHhcc--ccHHHHHHHHHHHHhcCcccCCCccchhhhHHHh----ccc
Confidence 4444467777889999999999999988888877666 899999999999999998753 44655444 457
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhC--CChhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHcccHHHHHH
Q 001486 89 IDKVVEVFERAVQSATYSVDVWFHYCSLSMSTF--EDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQ 166 (1070)
Q Consensus 89 ~e~A~~lferAL~~~P~s~~lW~~y~~~~~~~~--~~~~~ar~vferAL~~~p~~~~s~~lW~~yi~fe~~~~~~~~a~~ 166 (1070)
.+.|+..|+||+.++|.++...+.++.+.+... ..+.++...+.+|....+.++. +-.......-..+++..|..
T Consensus 215 ~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~---~l~~LAn~fyfK~dy~~v~~ 291 (1018)
T KOG2002|consen 215 SEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPV---ALNHLANHFYFKKDYERVWH 291 (1018)
T ss_pred hhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcH---HHHHHHHHHhhcccHHHHHH
Confidence 789999999999999999998888887766651 2456677778888877776543 44444555555678888888
Q ss_pred HHHHHHccCCcCHHH---HHHHHHH--HHHHHHHHhhhcchhhHHHHHHHhhcCCccccccchhhhHHHhhhcCcchhHH
Q 001486 167 IFVQTLRFPSKKLHH---YYDSFKK--LAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLV 241 (1070)
Q Consensus 167 iy~raL~~p~~~~~~---~~~~~~~--~~~~~~eal~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~i~~~~~~~~~~~ 241 (1070)
++.-++......... +|..-+. ..+.++++.. .....+.. +.. +
T Consensus 292 la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~--------yY~~s~k~-------~~d--------------~-- 340 (1018)
T KOG2002|consen 292 LAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFK--------YYMESLKA-------DND--------------N-- 340 (1018)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHH--------HHHHHHcc-------CCC--------------C--
Confidence 888887643222211 1110000 0111221111 00000000 000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCChHHHHHHHHHHHHHHHcC----CHHHHHHHHHHHhc
Q 001486 242 RSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQG----DFDWVVKLYERCLI 317 (1070)
Q Consensus 242 ~a~~~~~~~~~~~~~y~~a~~~~~~~~~fE~ai~~~~~~~~~~~p~~~~~W~~yi~~~~~~g----~~~~a~~~yerAL~ 317 (1070)
+++.+.. ..++|-.-.++......||+.++ ..|++.+.-.-++.++...+ ..++|..+..+++.
T Consensus 341 ---~~l~~~G-lgQm~i~~~dle~s~~~fEkv~k--------~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~ 408 (1018)
T KOG2002|consen 341 ---FVLPLVG-LGQMYIKRGDLEESKFCFEKVLK--------QLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLE 408 (1018)
T ss_pred ---ccccccc-hhHHHHHhchHHHHHHHHHHHHH--------hCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHh
Confidence 0000000 12223333344556667777664 46777777777777776553 57899999999999
Q ss_pred cCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhh---hch-HHHHHHHHHHHHhCCHHHHHHHHHHHhhccC----
Q 001486 318 PCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLK---RLP-VIHLFNARYKEQIGDTSAARAAFPESYIDSD---- 389 (1070)
Q Consensus 318 ~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~---~~p-~i~~~~a~~e~~~g~~~eA~~~~~~al~~~~---- 389 (1070)
..|.+.++|+.++.+++..+ .-.+..+|.+|+.++.. ..| .+....|.+....|++.+|+..|..|+..+.
T Consensus 409 ~~~~d~~a~l~laql~e~~d-~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n 487 (1018)
T KOG2002|consen 409 QTPVDSEAWLELAQLLEQTD-PWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVAN 487 (1018)
T ss_pred cccccHHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcC
Confidence 99999999999999887665 44559999999976432 133 5666778888999999999999999975422
Q ss_pred hh-----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhC
Q 001486 390 SR-----FIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHV 464 (1070)
Q Consensus 390 p~-----~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~g~~e~Ar~iyekaL~~~ 464 (1070)
++ .+.+-++++.+++.+++++.|..+|...++. .|..-..|+.+|.+.. ..+...+|...+..++..+
T Consensus 488 ~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke------hp~YId~ylRl~~ma~-~k~~~~ea~~~lk~~l~~d 560 (1018)
T KOG2002|consen 488 KDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE------HPGYIDAYLRLGCMAR-DKNNLYEASLLLKDALNID 560 (1018)
T ss_pred ccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH------CchhHHHHHHhhHHHH-hccCcHHHHHHHHHHHhcc
Confidence 21 2335778899999999999999999999998 6888899999986665 8899999999999999999
Q ss_pred CCcHHHHHHHHHHHHHcCCCcchhHHHHHHHHHhccCCcccccCChhhHHHHHHHHHHHH--------HHhCCHHHHHHH
Q 001486 465 PNCKLLLEELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFL--------DLCGTIHDIRNA 536 (1070)
Q Consensus 465 P~~~~lw~~y~~~e~~~g~~~~~~~ar~l~ekAl~~~~~~s~~l~~~~~~~l~~~~~~~e--------~~~G~~~~a~~~ 536 (1070)
..++.+|..+..+......+..+ ..-|+.++..-. ..-+.-....|-..|+.-. ...+..+.|..+
T Consensus 561 ~~np~arsl~G~~~l~k~~~~~a---~k~f~~i~~~~~---~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~ 634 (1018)
T KOG2002|consen 561 SSNPNARSLLGNLHLKKSEWKPA---KKKFETILKKTS---TKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQL 634 (1018)
T ss_pred cCCcHHHHHHHHHHHhhhhhccc---ccHHHHHHhhhc---cCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHH
Confidence 99999999999887766554432 344555543211 0111112233444443322 134456667777
Q ss_pred HHHHHHhCCCCc
Q 001486 537 WNQHIKLFPHTV 548 (1070)
Q Consensus 537 ~~ra~~~~p~~~ 548 (1070)
|.++++..|++.
T Consensus 635 y~kvL~~dpkN~ 646 (1018)
T KOG2002|consen 635 YGKVLRNDPKNM 646 (1018)
T ss_pred HHHHHhcCcchh
Confidence 777777777653
No 34
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=1.2e-14 Score=160.26 Aligned_cols=416 Identities=12% Similarity=0.012 Sum_probs=266.1
Q ss_pred chHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHHHHHH-HHH
Q 001486 22 GKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFE-RAV 100 (1070)
Q Consensus 22 ~~~~le~~l~~nP~s~~~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P~s~~lW~~ya~~e~~~~~~e~A~~lfe-rAL 100 (1070)
.++.|..+|...|+-.-.+-.....++.. ++++++.+...++|+++|+-++..+.-+.....+|++.+|..-.. -||
T Consensus 134 AIkyY~~AI~l~p~epiFYsNraAcY~~l--gd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci 211 (606)
T KOG0547|consen 134 AIKYYTQAIELCPDEPIFYSNRAACYESL--GDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKFDEALFDVTVLCI 211 (606)
T ss_pred HHHHHHHHHhcCCCCchhhhhHHHHHHHH--hhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHHHhhhHHHH
Confidence 35589999999999666666777778888 999999999999999999999999999999999998877653221 111
Q ss_pred HhcCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHH--HcCCCCCchHHHHHHHHHHHHc---------c-cHHHHHHHH
Q 001486 101 QSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALS--FVGKDYLCHTMWDKYIEFEISQ---------Q-RWSSLAQIF 168 (1070)
Q Consensus 101 ~~~P~s~~lW~~y~~~~~~~~~~~~~ar~vferAL~--~~p~~~~s~~lW~~yi~fe~~~---------~-~~~~a~~iy 168 (1070)
-..=.+..+-...=+.+.+. +++..++-++ ..|..+ +...-..|....... . ........+
T Consensus 212 ~~~F~n~s~~~~~eR~Lkk~------a~~ka~e~~k~nr~p~lP-S~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l 284 (606)
T KOG0547|consen 212 LEGFQNASIEPMAERVLKKQ------AMKKAKEKLKENRPPVLP-SATFIASYFGSFHADPKPLFDNKSDKSDAALAEAL 284 (606)
T ss_pred hhhcccchhHHHHHHHHHHH------HHHHHHHhhcccCCCCCC-cHHHHHHHHhhccccccccccCCCccchhhHHHHH
Confidence 11111111211112222222 3333333333 112212 333333333322111 0 001111111
Q ss_pred HHHHccCCcCHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHhhcCCcccccc--chhhhHHHhhhcCcchhHHHHHHH
Q 001486 169 VQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYK--DDETSSVIKDLLDPSVDLVRSKAI 246 (1070)
Q Consensus 169 ~raL~~p~~~~~~~~~~~~~~~~~~~eal~~~~~~~~~~~~~~~~~~~l~~~~~--~~e~~~~i~~~~~~~~~~~~a~~~ 246 (1070)
+...+.....+...+..+.+..... ......+ +.+++. .++++
T Consensus 285 ~~l~~~~~e~Y~~a~~~~te~~~~~----------------------~~~~~~n~~d~~le~-------------~A~al 329 (606)
T KOG0547|consen 285 EALEKGLEEGYLKAYDKATEECLGS----------------------ESSLSVNEIDAELEY-------------MAEAL 329 (606)
T ss_pred HHHHhhCchhHHHHHHHHHHHhhhh----------------------hhhccccccchhHHH-------------HHHHH
Confidence 1111111111111111111110000 0000001 111100 00000
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHhhcccCCCCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHH
Q 001486 247 QKYRFIGEQIYKE-ASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEF 325 (1070)
Q Consensus 247 ~~~~~~~~~~y~~-a~~~~~~~~~fE~ai~~~~~~~~~~~p~~~~~W~~yi~~~~~~g~~~~a~~~yerAL~~~p~~~~l 325 (1070)
...+.|.- ..+.......|..+|. ++|....+++.++..+....+..+-...|.+|...+|.++++
T Consensus 330 -----~~~gtF~fL~g~~~~a~~d~~~~I~--------l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dv 396 (606)
T KOG0547|consen 330 -----LLRGTFHFLKGDSLGAQEDFDAAIK--------LDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDV 396 (606)
T ss_pred -----HHhhhhhhhcCCchhhhhhHHHHHh--------cCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCch
Confidence 01111110 0112223345555554 455566678888888888888899999999999999999999
Q ss_pred HHHHHHHHHhhCChhHHHHHHHHHHHHHhhhchHHHHHHHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHH
Q 001486 326 WMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERR 405 (1070)
Q Consensus 326 W~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~eA~~~~~~al~~~~p~~~~~w~~~a~le~~ 405 (1070)
|+..|..+.-.+++++|..=|++|+++ .|++.-.+...+-.+.+.+.++++...|+.+++ --|.+++++..++.++..
T Consensus 397 YyHRgQm~flL~q~e~A~aDF~Kai~L-~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk-kFP~~~Evy~~fAeiLtD 474 (606)
T KOG0547|consen 397 YYHRGQMRFLLQQYEEAIADFQKAISL-DPENAYAYIQLCCALYRQHKIAESMKTFEEAKK-KFPNCPEVYNLFAEILTD 474 (606)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHhhc-ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCchHHHHHHHHHhh
Confidence 999999999999999999999999998 555545666667778899999999999999984 458889999999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCCc
Q 001486 406 LGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLLLEELIKFTMVHGGRS 485 (1070)
Q Consensus 406 ~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~g~~e~Ar~iyekaL~~~P~~~~lw~~y~~~e~~~g~~~ 485 (1070)
.++|+.|.+.|++|+++-+....-.-.+-.+++.|.+...-.+++..|..++++|++.+|.+--.+..++.|+...|+.+
T Consensus 475 qqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~ 554 (606)
T KOG0547|consen 475 QQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKID 554 (606)
T ss_pred HHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHH
Confidence 99999999999999998211111111444556666655434699999999999999999999999999999999999765
Q ss_pred chhHHHHHHHHHhc
Q 001486 486 HISIVDAVISNALY 499 (1070)
Q Consensus 486 ~~~~ar~l~ekAl~ 499 (1070)
+ |.++||+++.
T Consensus 555 e---AielFEksa~ 565 (606)
T KOG0547|consen 555 E---AIELFEKSAQ 565 (606)
T ss_pred H---HHHHHHHHHH
Confidence 5 6799999974
No 35
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.71 E-value=2e-13 Score=174.01 Aligned_cols=409 Identities=9% Similarity=0.016 Sum_probs=258.6
Q ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcCCCHHHHHH
Q 001486 35 LDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFP--LCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFH 112 (1070)
Q Consensus 35 ~s~~~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P--~s~~lW~~ya~~e~~~~~~e~A~~lferAL~~~P~s~~lW~~ 112 (1070)
.++..+...+..+.+. |++++|+.+|+.+.+... .+.-++..++..+.+.+.+++|..+|+.... .+...|..
T Consensus 368 ~~~~~~~~~y~~l~r~--G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~---pd~~Tyn~ 442 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRD--GRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN---PTLSTFNM 442 (1060)
T ss_pred CCchHHHHHHHHHHHC--cCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC---CCHHHHHH
Confidence 3455566655555555 788889999988887643 3334455566667777888888888876654 46777888
Q ss_pred HHHHHHhhCCChhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHcccHHHHHHHHHHHHccCCc-CHHHHHHHHHHHHH
Q 001486 113 YCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSK-KLHHYYDSFKKLAG 191 (1070)
Q Consensus 113 y~~~~~~~~~~~~~ar~vferAL~~~p~~~~s~~lW~~yi~fe~~~~~~~~a~~iy~raL~~p~~-~~~~~~~~~~~~~~ 191 (1070)
.+..+.+. ++++.|+++|++.++. |... ....|...+....+.|.++.|.++|.++.+.-.. +. ..| ..++.
T Consensus 443 LL~a~~k~-g~~e~A~~lf~~M~~~-Gl~p-D~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~Pdv-vTy---naLI~ 515 (1060)
T PLN03218 443 LMSVCASS-QDIDGALRVLRLVQEA-GLKA-DCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANV-HTF---GALID 515 (1060)
T ss_pred HHHHHHhC-cCHHHHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCH-HHH---HHHHH
Confidence 88877777 8888999999887664 3332 4577888888888888888888888887642111 11 111 11111
Q ss_pred HHHHHhhhcchhhHHHHHHHhhcCCccccccchhhhHHHhhhcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001486 192 AWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFE 271 (1070)
Q Consensus 192 ~~~eal~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~i~~~~~~~~~~~~a~~~~~~~~~~~~~y~~a~~~~~~~~~fE 271 (1070)
.+- ..+.+++|.++ |+
T Consensus 516 gy~----------------------------------------------------------k~G~~eeAl~l------f~ 531 (1060)
T PLN03218 516 GCA----------------------------------------------------------RAGQVAKAFGA------YG 531 (1060)
T ss_pred HHH----------------------------------------------------------HCcCHHHHHHH------HH
Confidence 100 00001112222 22
Q ss_pred HhhcccCCCCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc---CCCCHHHHHHHHHHHHhhCChhHHHHHHHH
Q 001486 272 NLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIP---CADYPEFWMRYVDFMESKGGREIASYALDR 348 (1070)
Q Consensus 272 ~ai~~~~~~~~~~~p~~~~~W~~yi~~~~~~g~~~~a~~~yerAL~~---~p~~~~lW~~ya~~l~~~g~~e~A~~il~r 348 (1070)
..... ...| +...|..++..+.+.|++++|..+|++.... ..-+...|..++..|.+.|++++|+.+|++
T Consensus 532 ~M~~~------Gv~P-D~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~ 604 (1060)
T PLN03218 532 IMRSK------NVKP-DRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQM 604 (1060)
T ss_pred HHHHc------CCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 21111 0122 2446777777777778888888888777642 122345677777777778888888888877
Q ss_pred HHHHHhhhchHHHHHHHHHHHHhCCHHHHHHHHHHHhhc-cChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhc
Q 001486 349 ATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYID-SDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQR 427 (1070)
Q Consensus 349 Al~~~~~~~p~i~~~~a~~e~~~g~~~eA~~~~~~al~~-~~p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~ 427 (1070)
..+.-.+.++..|......+.+.|++++|.++|.+..+. +.|+ ...|..+++.+.+.|++++|..+|+++++.
T Consensus 605 M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~k~----- 678 (1060)
T PLN03218 605 IHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD-EVFFSALVDVAGHAGDLDKAFEILQDARKQ----- 678 (1060)
T ss_pred HHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-----
Confidence 776532334456766677777788888888888777632 2333 446667777777778888888888877764
Q ss_pred cCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhh-CCCcHHHHHHHHHHHHHcCCCcchhHHHHHHHHHhccCCcccc
Q 001486 428 KFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKH-VPNCKLLLEELIKFTMVHGGRSHISIVDAVISNALYSRPDVLK 506 (1070)
Q Consensus 428 ~~~~~~~l~i~~A~~~~~~~g~~e~Ar~iyekaL~~-~P~~~~lw~~y~~~e~~~g~~~~~~~ar~l~ekAl~~~~~~s~ 506 (1070)
+...+...|..+...+. +.|++++|+++|++..+. ...+...|..++....+.|+.++ |..+|++....
T Consensus 679 G~~pd~~tynsLI~ay~-k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~ee---Alelf~eM~~~------ 748 (1060)
T PLN03218 679 GIKLGTVSYSSLMGACS-NAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPK---ALEVLSEMKRL------ 748 (1060)
T ss_pred CCCCCHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHH---HHHHHHHHHHc------
Confidence 12334566777777776 778888888888777653 22245567777777777666554 45777766532
Q ss_pred cCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Q 001486 507 VFSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQHIKLF 544 (1070)
Q Consensus 507 ~l~~~~~~~l~~~~~~~e~~~G~~~~a~~~~~ra~~~~ 544 (1070)
++.|+ ...|...+......|+++.|..++.++++..
T Consensus 749 Gi~Pd--~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~G 784 (1060)
T PLN03218 749 GLCPN--TITYSILLVASERKDDADVGLDLLSQAKEDG 784 (1060)
T ss_pred CCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 22222 2345556666677788888888887777654
No 36
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.71 E-value=5.9e-17 Score=180.61 Aligned_cols=134 Identities=18% Similarity=0.082 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhhhchHHHHHHHH
Q 001486 287 IQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNAR 366 (1070)
Q Consensus 287 ~~~~~W~~yi~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~ 366 (1070)
.+...|..++.++.+.|+.++|+.+|++||...|++..++..++.++...|+.++++.++++.... .+.+|.+|..+|.
T Consensus 144 ~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~-~~~~~~~~~~la~ 222 (280)
T PF13429_consen 144 DSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKA-APDDPDLWDALAA 222 (280)
T ss_dssp T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH-CcCHHHHHHHHHH
Confidence 445689999999999999999999999999999999999999999999999999999999888876 4778889999999
Q ss_pred HHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001486 367 YKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALET 422 (1070)
Q Consensus 367 ~e~~~g~~~eA~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~ 422 (1070)
.+...|++++|+..|++++ ...|+++.++..+++++...|..++|..++.+++..
T Consensus 223 ~~~~lg~~~~Al~~~~~~~-~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 223 AYLQLGRYEEALEYLEKAL-KLNPDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp HHHHHT-HHHHHHHHHHHH-HHSTT-HHHHHHHHHHHT------------------
T ss_pred Hhccccccccccccccccc-cccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999998 678889999999999999999999999999999875
No 37
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.70 E-value=7.4e-16 Score=186.40 Aligned_cols=217 Identities=16% Similarity=0.217 Sum_probs=194.3
Q ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhhh----chHHHHHHHHHHHHhCCHHHHHHHHH
Q 001486 307 WVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKR----LPVIHLFNARYKEQIGDTSAARAAFP 382 (1070)
Q Consensus 307 ~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~----~p~i~~~~a~~e~~~g~~~eA~~~~~ 382 (1070)
+..+-|+|.+...|+..-+|+.|..|....+++++||++++||+...... .-++|.+|..+|...|.-+...++|+
T Consensus 1442 esaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFe 1521 (1710)
T KOG1070|consen 1442 ESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFE 1521 (1710)
T ss_pred cCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHH
Confidence 34567899999999999999999999999999999999999999975332 23799999999999998888999999
Q ss_pred HHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Q 001486 383 ESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIK 462 (1070)
Q Consensus 383 ~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~g~~e~Ar~iyekaL~ 462 (1070)
||...+++ ..++..+..+|.+.+.+++|.++|+..++.| .....+|+.||.++. +.++-++|+.++.+||+
T Consensus 1522 RAcqycd~--~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF------~q~~~vW~~y~~fLl-~~ne~~aa~~lL~rAL~ 1592 (1710)
T KOG1070|consen 1522 RACQYCDA--YTVHLKLLGIYEKSEKNDEADELLRLMLKKF------GQTRKVWIMYADFLL-RQNEAEAARELLKRALK 1592 (1710)
T ss_pred HHHHhcch--HHHHHHHHHHHHHhhcchhHHHHHHHHHHHh------cchhhHHHHHHHHHh-cccHHHHHHHHHHHHHh
Confidence 99977754 5678999999999999999999999999995 467899999999998 89999999999999999
Q ss_pred hCCC--cHHHHHHHHHHHHHcCCCcchhHHHHHHHHHhccCCcccccCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 001486 463 HVPN--CKLLLEELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQH 540 (1070)
Q Consensus 463 ~~P~--~~~lw~~y~~~e~~~g~~~~~~~ar~l~ekAl~~~~~~s~~l~~~~~~~l~~~~~~~e~~~G~~~~a~~~~~ra 540 (1070)
..|. ...+...++.+|.++||.++ .|.+||..+...| .+.+||..|++.|..+|+.+.++.+|+|+
T Consensus 1593 ~lPk~eHv~~IskfAqLEFk~GDaeR---GRtlfEgll~ayP---------KRtDlW~VYid~eik~~~~~~vR~lfeRv 1660 (1710)
T KOG1070|consen 1593 SLPKQEHVEFISKFAQLEFKYGDAER---GRTLFEGLLSAYP---------KRTDLWSVYIDMEIKHGDIKYVRDLFERV 1660 (1710)
T ss_pred hcchhhhHHHHHHHHHHHhhcCCchh---hHHHHHHHHhhCc---------cchhHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 9998 67899999999999998765 6799999997443 36799999999999999999999999999
Q ss_pred HHhC
Q 001486 541 IKLF 544 (1070)
Q Consensus 541 ~~~~ 544 (1070)
+.+-
T Consensus 1661 i~l~ 1664 (1710)
T KOG1070|consen 1661 IELK 1664 (1710)
T ss_pred HhcC
Confidence 9886
No 38
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.70 E-value=7e-14 Score=175.81 Aligned_cols=438 Identities=12% Similarity=0.037 Sum_probs=310.2
Q ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-cCCCHHHHHH
Q 001486 36 DFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFP--LCYGYWRKYADHKARLCSIDKVVEVFERAVQS-ATYSVDVWFH 112 (1070)
Q Consensus 36 s~~~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P--~s~~lW~~ya~~e~~~~~~e~A~~lferAL~~-~P~s~~lW~~ 112 (1070)
+...|...+..+... ++..+|..+|+.+....+ -+...|..++....+.++++.++.++..++.. +..++.+|..
T Consensus 86 ~~~~~~~~i~~l~~~--g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 86 SGVSLCSQIEKLVAC--GRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CceeHHHHHHHHHcC--CCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 334798988888776 899999999999987543 46678899999999999999999999988874 2346788999
Q ss_pred HHHHHHhhCCChhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHcccHHHHHHHHHHHHccCCcCHHHHHHHHHHHHHH
Q 001486 113 YCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAGA 192 (1070)
Q Consensus 113 y~~~~~~~~~~~~~ar~vferAL~~~p~~~~s~~lW~~yi~fe~~~~~~~~a~~iy~raL~~p~~~~~~~~~~~~~~~~~ 192 (1070)
++..+.+. |+++.|+++|++... + ....|...+.-....|.+++|.++|++.+......-...|.........
T Consensus 164 Li~~y~k~-g~~~~A~~lf~~m~~--~----~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~ 236 (697)
T PLN03081 164 VLLMHVKC-GMLIDARRLFDEMPE--R----NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAG 236 (697)
T ss_pred HHHHHhcC-CCHHHHHHHHhcCCC--C----CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhc
Confidence 99999988 999999999998643 1 3457888898888899999999999999753221111111111111100
Q ss_pred HHHHhhhcchhhHHHHHHHhhcCCccccccchhhhHHHhhhcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001486 193 WKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFEN 272 (1070)
Q Consensus 193 ~~eal~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~i~~~~~~~~~~~~a~~~~~~~~~~~~~y~~a~~~~~~~~~fE~ 272 (1070)
... + .....+...+.+..+.. +..... . .-..|.+..+..+++..|++
T Consensus 237 ~~~-~-----~~~~~l~~~~~~~g~~~---d~~~~n----------------~-------Li~~y~k~g~~~~A~~vf~~ 284 (697)
T PLN03081 237 LGS-A-----RAGQQLHCCVLKTGVVG---DTFVSC----------------A-------LIDMYSKCGDIEDARCVFDG 284 (697)
T ss_pred CCc-H-----HHHHHHHHHHHHhCCCc---cceeHH----------------H-------HHHHHHHCCCHHHHHHHHHh
Confidence 000 0 00001111111111000 000000 0 01113333333334444443
Q ss_pred hhcccCCCCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc-CCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHH
Q 001486 273 LIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIP-CADYPEFWMRYVDFMESKGGREIASYALDRATQ 351 (1070)
Q Consensus 273 ai~~~~~~~~~~~p~~~~~W~~yi~~~~~~g~~~~a~~~yerAL~~-~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~ 351 (1070)
.. +.+...|..++..+.+.|+.++|..+|++.... ..-+...+..++..+.+.|++++|+.+++..++
T Consensus 285 m~-----------~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~ 353 (697)
T PLN03081 285 MP-----------EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIR 353 (697)
T ss_pred CC-----------CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 21 224568999999999999999999999998754 233456788888889999999999999999988
Q ss_pred HHhhhchHHHHHHHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCC
Q 001486 352 IFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHT 431 (1070)
Q Consensus 352 ~~~~~~p~i~~~~a~~e~~~g~~~eA~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~ 431 (1070)
.-.+.+..++..+..++.+.|++++|+++|++..+ + +...|...+..+.+.|+.++|.++|+++++. +...
T Consensus 354 ~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~-d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~-----g~~P 424 (697)
T PLN03081 354 TGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR---K-NLISWNALIAGYGNHGRGTKAVEMFERMIAE-----GVAP 424 (697)
T ss_pred hCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC---C-CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC
Confidence 64344446778888889999999999999998752 2 4567999999999999999999999998875 1223
Q ss_pred cHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCC--cHHHHHHHHHHHHHcCCCcchhHHHHHHHHHhccCCcccccCC
Q 001486 432 LPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPN--CKLLLEELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFS 509 (1070)
Q Consensus 432 ~~~l~i~~A~~~~~~~g~~e~Ar~iyekaL~~~P~--~~~lw~~y~~~e~~~g~~~~~~~ar~l~ekAl~~~~~~s~~l~ 509 (1070)
+...|..+...+. ..|.+++|+++|+...+..+- +...|..+++.+.+.|..++ |..+|++.-. .
T Consensus 425 d~~T~~~ll~a~~-~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~e---A~~~~~~~~~---------~ 491 (697)
T PLN03081 425 NHVTFLAVLSACR-YSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDE---AYAMIRRAPF---------K 491 (697)
T ss_pred CHHHHHHHHHHHh-cCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHH---HHHHHHHCCC---------C
Confidence 4556666666666 899999999999999875443 44568888888888887655 5577776531 1
Q ss_pred hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcc
Q 001486 510 LEDVEDISSLYLQFLDLCGTIHDIRNAWNQHIKLFPHTVR 549 (1070)
Q Consensus 510 ~~~~~~l~~~~~~~e~~~G~~~~a~~~~~ra~~~~p~~~~ 549 (1070)
+ ...+|...+.....+|+++.+..++++.++..|+...
T Consensus 492 p--~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~ 529 (697)
T PLN03081 492 P--TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLN 529 (697)
T ss_pred C--CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCc
Confidence 1 2457999999999999999999999999998887543
No 39
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.69 E-value=6.7e-13 Score=165.03 Aligned_cols=438 Identities=12% Similarity=0.032 Sum_probs=283.2
Q ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 001486 23 KQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQS 102 (1070)
Q Consensus 23 ~~~le~~l~~nP~s~~~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P~s~~lW~~ya~~e~~~~~~e~A~~lferAL~~ 102 (1070)
...|+++++.+|.+......++.++-.. +..++|+.++++++...|..+..-..++..+...+++++|+.+|+++++.
T Consensus 54 l~~L~qaL~~~P~~~~av~dll~l~~~~--G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~ 131 (822)
T PRK14574 54 LDYLQEESKAGPLQSGQVDDWLQIAGWA--GRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKK 131 (822)
T ss_pred HHHHHHHHhhCccchhhHHHHHHHHHHc--CCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4489999999999853333666655555 88999999999999444555555555577888889999999999999999
Q ss_pred cCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHcccHHHHHHHHHHHHccCCcCHHHH
Q 001486 103 ATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHY 182 (1070)
Q Consensus 103 ~P~s~~lW~~y~~~~~~~~~~~~~ar~vferAL~~~p~~~~s~~lW~~yi~fe~~~~~~~~a~~iy~raL~~p~~~~~~~ 182 (1070)
.|.+.+++..++..+... ++.++|...+++++...|... .....+.+....++..++..+|++++...+.+...+
T Consensus 132 dP~n~~~l~gLa~~y~~~-~q~~eAl~~l~~l~~~dp~~~----~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~ 206 (822)
T PRK14574 132 DPTNPDLISGMIMTQADA-GRGGVVLKQATELAERDPTVQ----NYMTLSYLNRATDRNYDALQASSEAVRLAPTSEEVL 206 (822)
T ss_pred CCCCHHHHHHHHHHHhhc-CCHHHHHHHHHHhcccCcchH----HHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHH
Confidence 999999998887777777 889999999999988877632 123333333344555569999999987655554444
Q ss_pred HHHHHHHHHHHHHHhhhcchhhHHHHHHHhhcCCccccccchhhhHHHhhhcCcchhHHHHHHH-HHHHHHHHHHHHHHH
Q 001486 183 YDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAI-QKYRFIGEQIYKEAS 261 (1070)
Q Consensus 183 ~~~~~~~~~~~~eal~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~i~~~~~~~~~~~~a~~~-~~~~~~~~~~y~~a~ 261 (1070)
+..+.. +..+.-. ..-.+++.. .+..++..+..- ++...-...++.- ..-. ....-|..
T Consensus 207 ~~~~~~-l~~~~~~---------~~a~~l~~~--~p~~f~~~~~~~-----l~~~~~a~~vr~a~~~~~-~~~~r~~~-- 266 (822)
T PRK14574 207 KNHLEI-LQRNRIV---------EPALRLAKE--NPNLVSAEHYRQ-----LERDAAAEQVRMAVLPTR-SETERFDI-- 266 (822)
T ss_pred HHHHHH-HHHcCCc---------HHHHHHHHh--CccccCHHHHHH-----HHHHHHHHHHhhcccccc-cchhhHHH--
Confidence 433322 2221100 000001100 011111111110 0000000000000 0000 00001111
Q ss_pred HHHHHHHHHHHhhcccCCCCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc---CCCCHHHHHHHHHHHHhhCC
Q 001486 262 QLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIP---CADYPEFWMRYVDFMESKGG 338 (1070)
Q Consensus 262 ~~~~~~~~fE~ai~~~~~~~~~~~p~~~~~W~~yi~~~~~~g~~~~a~~~yerAL~~---~p~~~~lW~~ya~~l~~~g~ 338 (1070)
+.+.+..++..+.+.- ...+..+....+-..++-.+...|++++|+..|+..-.. .|.+...| +|..|...+.
T Consensus 267 -~d~ala~~~~l~~~~~-~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a--~adayl~~~~ 342 (822)
T PRK14574 267 -ADKALADYQNLLTRWG-KDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRW--AASAYIDRRL 342 (822)
T ss_pred -HHHHHHHHHHHHhhcc-CCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHH--HHHHHHhcCC
Confidence 1223344444443210 001111222334445556666788999999999998743 35555444 5777888899
Q ss_pred hhHHHHHHHHHHHHHhh---hchH----HHHHHHHHHHHhCCHHHHHHHHHHHhhcc--------------ChhhHHHHH
Q 001486 339 REIASYALDRATQIFLK---RLPV----IHLFNARYKEQIGDTSAARAAFPESYIDS--------------DSRFIEKVT 397 (1070)
Q Consensus 339 ~e~A~~il~rAl~~~~~---~~p~----i~~~~a~~e~~~g~~~eA~~~~~~al~~~--------------~p~~~~~w~ 397 (1070)
.++|..+|+.++..-.+ ..+. .-++|+ +...+++++|..++++..+.. +++...+..
T Consensus 343 P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA--~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~ 420 (822)
T PRK14574 343 PEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYS--LNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQT 420 (822)
T ss_pred cHHHHHHHHHHhhccccccCCCcchHHHHHHHHH--HHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHH
Confidence 99999999998764111 1111 223333 456899999999999987411 234556666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 001486 398 FKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLLLEELIKF 477 (1070)
Q Consensus 398 ~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~g~~e~Ar~iyekaL~~~P~~~~lw~~y~~~ 477 (1070)
..+..+...|++.+|.+.+++.+.. .|.+..+++.+|.++. ..|...+|+.+|+.++...|++..+-...+..
T Consensus 421 l~a~~~~~~gdl~~Ae~~le~l~~~------aP~n~~l~~~~A~v~~-~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~ 493 (822)
T PRK14574 421 LLVQSLVALNDLPTAQKKLEDLSST------APANQNLRIALASIYL-ARDLPRKAEQELKAVESLAPRSLILERAQAET 493 (822)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHhhhCCccHHHHHHHHHH
Confidence 7777788889999999999999998 7999999999999998 99999999999999999999999888888887
Q ss_pred HHHcCCCcchhHHHHHHHHHhccCCc
Q 001486 478 TMVHGGRSHISIVDAVISNALYSRPD 503 (1070)
Q Consensus 478 e~~~g~~~~~~~ar~l~ekAl~~~~~ 503 (1070)
.+..|+... ++.++++.+...|+
T Consensus 494 al~l~e~~~---A~~~~~~l~~~~Pe 516 (822)
T PRK14574 494 AMALQEWHQ---MELLTDDVISRSPE 516 (822)
T ss_pred HHhhhhHHH---HHHHHHHHHhhCCC
Confidence 777787765 55888888876664
No 40
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=2.7e-13 Score=149.10 Aligned_cols=183 Identities=13% Similarity=-0.005 Sum_probs=143.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhhhchHHHHHHHHHHHHhCCHH
Q 001486 296 LSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTS 375 (1070)
Q Consensus 296 i~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~ 375 (1070)
++++.-.++-+.|+..|+|||+.+|++..+|...|.-+....+...|+..|++|+++ .|.+-..|+.+|..++..+-..
T Consensus 337 aNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi-~p~DyRAWYGLGQaYeim~Mh~ 415 (559)
T KOG1155|consen 337 ANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI-NPRDYRAWYGLGQAYEIMKMHF 415 (559)
T ss_pred hhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc-CchhHHHHhhhhHHHHHhcchH
Confidence 444444566778888999999999999999988888887888888888999999988 4555568888888888888888
Q ss_pred HHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhcCCHHHHHH
Q 001486 376 AARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARD 455 (1070)
Q Consensus 376 eA~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~g~~e~Ar~ 455 (1070)
=|+-.|++|+ .+.|...++|..+++++.+++++++|+++|.+|+.. ......+++.+|.+++ +.++.++|..
T Consensus 416 YaLyYfqkA~-~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~------~dte~~~l~~LakLye-~l~d~~eAa~ 487 (559)
T KOG1155|consen 416 YALYYFQKAL-ELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILL------GDTEGSALVRLAKLYE-ELKDLNEAAQ 487 (559)
T ss_pred HHHHHHHHHH-hcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc------cccchHHHHHHHHHHH-HHHhHHHHHH
Confidence 8888888888 788888889999999998889999999999998886 3445678888888887 8889999999
Q ss_pred HHHHHHhh-------CCCcHHHHHHHHHHHHHcCCCcch
Q 001486 456 ILIDGIKH-------VPNCKLLLEELIKFTMVHGGRSHI 487 (1070)
Q Consensus 456 iyekaL~~-------~P~~~~lw~~y~~~e~~~g~~~~~ 487 (1070)
+|++.|+. .++....-.-++.++.+.++.+++
T Consensus 488 ~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~A 526 (559)
T KOG1155|consen 488 YYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEA 526 (559)
T ss_pred HHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHH
Confidence 99888873 333333333366677776766654
No 41
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=99.69 E-value=3.9e-14 Score=162.02 Aligned_cols=445 Identities=12% Similarity=0.119 Sum_probs=252.3
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcC
Q 001486 25 GLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSAT 104 (1070)
Q Consensus 25 ~le~~l~~nP~s~~~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P~s~~lW~~ya~~e~~~~~~e~A~~lferAL~~~P 104 (1070)
.....+.+.|.+.+.|..+.... .+...|..++.--......+.++.+|...|...|
T Consensus 20 ~~n~~~~~~p~~~~~we~~~~~~-----------------------~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~kyP 76 (577)
T KOG1258|consen 20 TDNTSLTKYPDSLDYWEILSNDS-----------------------LDFDAWTTLIQENDSIEDVDALREVYDIFLSKYP 76 (577)
T ss_pred ccchhhhhCcchhhHhhccccch-----------------------hcccchHHHHhccCchhHHHHHHHHHHHHHhhCc
Confidence 45567777777777776554421 2334565555433333356889999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHH-cccHHHHHHHHHHHHccCCc--CHHH
Q 001486 105 YSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEIS-QQRWSSLAQIFVQTLRFPSK--KLHH 181 (1070)
Q Consensus 105 ~s~~lW~~y~~~~~~~~~~~~~ar~vferAL~~~p~~~~s~~lW~~yi~fe~~-~~~~~~a~~iy~raL~~p~~--~~~~ 181 (1070)
.....|..|+.++... |..+.+.+||+|++..+|. +..+|..|+.|... .++.+.+++.|++|+.+--. --..
T Consensus 77 l~~gyW~kfA~~E~kl-g~~~~s~~Vfergv~aip~---SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~ 152 (577)
T KOG1258|consen 77 LCYGYWKKFADYEYKL-GNAENSVKVFERGVQAIPL---SVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDP 152 (577)
T ss_pred cHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccH
Confidence 9999999999999999 9999999999999999985 88999999999876 46778899999999753211 1123
Q ss_pred HHHHHHHHHHHHHHHhhhcchhhHHHHHHHhhcCCccccccchhhhHHHhhhcCcchhHHHHHHHHHHHHHHHHHHHHHH
Q 001486 182 YYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEAS 261 (1070)
Q Consensus 182 ~~~~~~~~~~~~~eal~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~i~~~~~~~~~~~~a~~~~~~~~~~~~~y~~a~ 261 (1070)
+|+.|-+++..-. .-+.+..+++-++.-.+. .++.. .......++..... ......
T Consensus 153 lWdkyie~en~qk------s~k~v~~iyeRileiP~~-~~~~~--f~~f~~~l~~~~~~---------------~l~~~d 208 (577)
T KOG1258|consen 153 LWDKYIEFENGQK------SWKRVANIYERILEIPLH-QLNRH--FDRFKQLLNQNEEK---------------ILLSID 208 (577)
T ss_pred HHHHHHHHHhccc------cHHHHHHHHHHHHhhhhh-HhHHH--HHHHHHHHhcCChh---------------hhcCHH
Confidence 4444445442210 000111112211111100 00000 00000000000000 000000
Q ss_pred HHHHHHHHHHHhhcccCCCCCCCChHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhCChh
Q 001486 262 QLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQG-DFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGRE 340 (1070)
Q Consensus 262 ~~~~~~~~fE~ai~~~~~~~~~~~p~~~~~W~~yi~~~~~~g-~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e 340 (1070)
.+...+....... ..+......+.|...+......+ ..+.+.....+.+. -...+|..... ..
T Consensus 209 ~~~~l~~~~~~~~------~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~---~~~~~~~~s~~-------~~ 272 (577)
T KOG1258|consen 209 ELIQLRSDVAERS------KITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVS---IHEKVYQKSEE-------EE 272 (577)
T ss_pred HHHHHhhhHHhhh------hcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHH---HHHHHHHhhHh-------HH
Confidence 0000001111000 00111133445555554433222 12333322222221 12223333322 23
Q ss_pred HHHHHHHHHHHHHh----hhc---hHHHHHHHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHH
Q 001486 341 IASYALDRATQIFL----KRL---PVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAAC 413 (1070)
Q Consensus 341 ~A~~il~rAl~~~~----~~~---p~i~~~~a~~e~~~g~~~eA~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~ 413 (1070)
+.+..|+..++... +.+ -..|..+..|++..|+++.+.-+|++++ .-...+.+.|++|+.+....|+.+-|.
T Consensus 273 ~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercl-i~cA~Y~efWiky~~~m~~~~~~~~~~ 351 (577)
T KOG1258|consen 273 EKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCL-IPCALYDEFWIKYARWMESSGDVSLAN 351 (577)
T ss_pred HHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHH-hHHhhhHHHHHHHHHHHHHcCchhHHH
Confidence 33445555554310 111 1467777778888888888888888876 333566777888888777778888888
Q ss_pred HHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCCcchhHHHHH
Q 001486 414 DTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLLLEELIKFTMVHGGRSHISIVDAV 493 (1070)
Q Consensus 414 ~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~g~~e~Ar~iyekaL~~~P~~~~lw~~y~~~e~~~g~~~~~~~ar~l 493 (1070)
.++.++.+.+ .+..+.+.+.+|.+++ ..|+++.|+.+|++....+|+...+-..++.++.+.|+.........+
T Consensus 352 ~~~~~~~~i~-----~k~~~~i~L~~a~f~e-~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l 425 (577)
T KOG1258|consen 352 NVLARACKIH-----VKKTPIIHLLEARFEE-SNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNEL 425 (577)
T ss_pred HHHHhhhhhc-----CCCCcHHHHHHHHHHH-hhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHH
Confidence 8888877775 4667777788888877 778888888888888887777777777778888877776654322233
Q ss_pred HHHHhccCCcccccCChhhHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHhCCCCcc
Q 001486 494 ISNALYSRPDVLKVFSLEDVEDISSLYLQFLD-LCGTIHDIRNAWNQHIKLFPHTVR 549 (1070)
Q Consensus 494 ~ekAl~~~~~~s~~l~~~~~~~l~~~~~~~e~-~~G~~~~a~~~~~ra~~~~p~~~~ 549 (1070)
+...+. +.+....-+.++..+++|-. -.++.+.|..++..++..+|+...
T Consensus 426 ~s~~~~------~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~ 476 (577)
T KOG1258|consen 426 YSSIYE------GKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKV 476 (577)
T ss_pred HHHhcc------cccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHH
Confidence 332221 12222333444555555543 457777888888888888877654
No 42
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.68 E-value=1.8e-16 Score=176.79 Aligned_cols=164 Identities=19% Similarity=0.192 Sum_probs=114.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcc--CCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhhhchHHHHHHHHHH
Q 001486 291 NWHDYLSFAEKQGDFDWVVKLYERCLIP--CADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYK 368 (1070)
Q Consensus 291 ~W~~yi~~~~~~g~~~~a~~~yerAL~~--~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e 368 (1070)
.|..++..+...++++++..+++++... .+.+..+|+.+|.++.+.|+.++|+.+|++|++. .|+++.++..++.++
T Consensus 112 ~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~-~P~~~~~~~~l~~~l 190 (280)
T PF13429_consen 112 YLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL-DPDDPDARNALAWLL 190 (280)
T ss_dssp ------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--TT-HHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHH
Confidence 4556666667788899999999986643 4678899999999999999999999999999997 777888898899999
Q ss_pred HHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhcC
Q 001486 369 EQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTG 448 (1070)
Q Consensus 369 ~~~g~~~eA~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~g 448 (1070)
...|+.++++.++....+ ..+....+|..++.++..+|++++|..+|+++++. .|.++.+.+.+|.++. ..|
T Consensus 191 i~~~~~~~~~~~l~~~~~-~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~------~p~d~~~~~~~a~~l~-~~g 262 (280)
T PF13429_consen 191 IDMGDYDEAREALKRLLK-AAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKL------NPDDPLWLLAYADALE-QAG 262 (280)
T ss_dssp CTTCHHHHHHHHHHHHHH-H-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH------STT-HHHHHHHHHHHT----
T ss_pred HHCCChHHHHHHHHHHHH-HCcCHHHHHHHHHHHhccccccccccccccccccc------cccccccccccccccc-ccc
Confidence 999999999998888763 33666678889999999999999999999999998 7889999999999998 999
Q ss_pred CHHHHHHHHHHHHhh
Q 001486 449 SADNARDILIDGIKH 463 (1070)
Q Consensus 449 ~~e~Ar~iyekaL~~ 463 (1070)
+.++|..+++++++.
T Consensus 263 ~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 263 RKDEALRLRRQALRL 277 (280)
T ss_dssp ---------------
T ss_pred ccccccccccccccc
Confidence 999999999998764
No 43
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.68 E-value=1.8e-12 Score=165.47 Aligned_cols=141 Identities=9% Similarity=0.046 Sum_probs=111.8
Q ss_pred HHHHHHHhCC--CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 001486 25 GLEEFIAEGS--LDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQS 102 (1070)
Q Consensus 25 ~le~~l~~nP--~s~~~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P~s~~lW~~ya~~e~~~~~~e~A~~lferAL~~ 102 (1070)
.|++....+. .+.-.+..++..+... +.+++|..+|+.+.. | +...|..++..+.+.++++.|+.+|+++.+.
T Consensus 392 Lfd~M~~~gvv~~~~v~~~~li~~~~~~--g~~~eAl~lf~~M~~--p-d~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~ 466 (1060)
T PLN03218 392 LLEDMEKRGLLDMDKIYHAKFFKACKKQ--RAVKEAFRFAKLIRN--P-TLSTFNMLMSVCASSQDIDGALRVLRLVQEA 466 (1060)
T ss_pred HHHHHHhCCCCCchHHHHHHHHHHHHHC--CCHHHHHHHHHHcCC--C-CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHc
Confidence 4444444443 3344445566767666 789999999988875 4 5678999999999999999999999999876
Q ss_pred -cCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHcccHHHHHHHHHHHHc
Q 001486 103 -ATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLR 173 (1070)
Q Consensus 103 -~P~s~~lW~~y~~~~~~~~~~~~~ar~vferAL~~~p~~~~s~~lW~~yi~fe~~~~~~~~a~~iy~raL~ 173 (1070)
+..++..|..++..+.+. |+++.|+++|++..+. |... ....|...+....+.|++++|.++|.+...
T Consensus 467 Gl~pD~~tynsLI~~y~k~-G~vd~A~~vf~eM~~~-Gv~P-dvvTynaLI~gy~k~G~~eeAl~lf~~M~~ 535 (1060)
T PLN03218 467 GLKADCKLYTTLISTCAKS-GKVDAMFEVFHEMVNA-GVEA-NVHTFGALIDGCARAGQVAKAFGAYGIMRS 535 (1060)
T ss_pred CCCCCHHHHHHHHHHHHhC-cCHHHHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 345788999999999988 9999999999998864 3333 467899999999999999999999998864
No 44
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=6e-13 Score=146.47 Aligned_cols=223 Identities=11% Similarity=-0.009 Sum_probs=179.8
Q ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhhhchHHHHHHHHHHHHhCCHHHHHHHHHHHh
Q 001486 306 DWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESY 385 (1070)
Q Consensus 306 ~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~eA~~~~~~al 385 (1070)
.++..+-..+...+..-++--.-.|.+|.-.+..++|...|+||+++ .|+...+|-..|--+...++...|...|++|+
T Consensus 313 skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL-Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAv 391 (559)
T KOG1155|consen 313 SKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL-NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAV 391 (559)
T ss_pred HHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc-CcchhHHHHHhhHHHHHhcccHHHHHHHHHHH
Confidence 34444445555555555666667788888889999999999999998 66666788888877788899999999999999
Q ss_pred hccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCC
Q 001486 386 IDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVP 465 (1070)
Q Consensus 386 ~~~~p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~g~~e~Ar~iyekaL~~~P 465 (1070)
+++|...++|+.++..+.-++...-|.-.|++|++. .|.++.+|+.+|.||. ..+++++|.++|.+++...-
T Consensus 392 -di~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~------kPnDsRlw~aLG~CY~-kl~~~~eAiKCykrai~~~d 463 (559)
T KOG1155|consen 392 -DINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL------KPNDSRLWVALGECYE-KLNRLEEAIKCYKRAILLGD 463 (559)
T ss_pred -hcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc------CCCchHHHHHHHHHHH-HhccHHHHHHHHHHHHhccc
Confidence 899999999999999999999999999999999999 7999999999999998 99999999999999998877
Q ss_pred CcHHHHHHHHHHHHHcCCCcchhHHHHHHHHHhccCCcccccCChhhHH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 001486 466 NCKLLLEELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVE-DISSLYLQFLDLCGTIHDIRNAWNQHIKL 543 (1070)
Q Consensus 466 ~~~~lw~~y~~~e~~~g~~~~~~~ar~l~ekAl~~~~~~s~~l~~~~~~-~l~~~~~~~e~~~G~~~~a~~~~~ra~~~ 543 (1070)
.+..++..++++..+.++.++ |...|++.+.... ..+...++..+ .+| ...++.+.+++++|.....++++.
T Consensus 464 te~~~l~~LakLye~l~d~~e---Aa~~yek~v~~~~-~eg~~~~~t~ka~~f--LA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 464 TEGSALVRLAKLYEELKDLNE---AAQYYEKYVEVSE-LEGEIDDETIKARLF--LAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred cchHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHH-hhcccchHHHHHHHH--HHHHHHhhcchHHHHHHHHHHhcC
Confidence 778888889999888887766 4588888886321 01122333322 333 678888899999887766666555
No 45
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=99.67 E-value=3e-16 Score=173.72 Aligned_cols=139 Identities=19% Similarity=0.272 Sum_probs=120.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHH
Q 001486 394 EKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLLLEE 473 (1070)
Q Consensus 394 ~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~g~~e~Ar~iyekaL~~~P~~~~lw~~ 473 (1070)
-+|+.|+++.++.++++.||.+|++|++. ....+++|+.+|.+|+...++.+.|++|||+|++.+|.+..+|..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~------~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~ 75 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKD------KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLE 75 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC------CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 37999999999999999999999999864 567899999999999844677788999999999999999999999
Q ss_pred HHHHHHHcCCCcchhHHHHHHHHHhccCCcccccCChhh-HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCc
Q 001486 474 LIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLED-VEDISSLYLQFLDLCGTIHDIRNAWNQHIKLFPHTV 548 (1070)
Q Consensus 474 y~~~e~~~g~~~~~~~ar~l~ekAl~~~~~~s~~l~~~~-~~~l~~~~~~~e~~~G~~~~a~~~~~ra~~~~p~~~ 548 (1070)
|++|+...|+.++ +|.+||+++. .++.+. ...||..|++||..+|+++.+.++++|+..++|+..
T Consensus 76 Y~~~l~~~~d~~~---aR~lfer~i~-------~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 76 YLDFLIKLNDINN---ARALFERAIS-------SLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHHHHHHTT-HHH---HHHHHHHHCC-------TSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHHHHHHhCcHHH---HHHHHHHHHH-------hcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 9999999987554 7899999996 455566 789999999999999999999999999999999843
No 46
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.66 E-value=1.7e-12 Score=153.52 Aligned_cols=372 Identities=12% Similarity=0.104 Sum_probs=236.8
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 001486 37 FDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSL 116 (1070)
Q Consensus 37 ~~~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P~s~~lW~~ya~~e~~~~~~e~A~~lferAL~~~P~s~~lW~~y~~~ 116 (1070)
+..-+..++++-.. |++++|.+++..+++.+|..+..|..++.++...|+.+++...+-.|=-..|.+.++|..++++
T Consensus 139 l~~ll~eAN~lfar--g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladl 216 (895)
T KOG2076|consen 139 LRQLLGEANNLFAR--GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADL 216 (895)
T ss_pred HHHHHHHHHHHHHh--CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 44555556666555 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCChhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHcccHHHHHHHHHHHHcc-CCcCHHHHHHHHHHHHHHHHH
Q 001486 117 SMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRF-PSKKLHHYYDSFKKLAGAWKE 195 (1070)
Q Consensus 117 ~~~~~~~~~~ar~vferAL~~~p~~~~s~~lW~~yi~fe~~~~~~~~a~~iy~raL~~-p~~~~~~~~~~~~~~~~~~~e 195 (1070)
..+. |.++.|+-.|.|||...|.+. ++-..+..+....|....|...|.+++.+ |..++..+...-...+..+..
T Consensus 217 s~~~-~~i~qA~~cy~rAI~~~p~n~---~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~ 292 (895)
T KOG2076|consen 217 SEQL-GNINQARYCYSRAIQANPSNW---ELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFIT 292 (895)
T ss_pred HHhc-ccHHHHHHHHHHHHhcCCcch---HHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHH
Confidence 9998 999999999999999999853 34445667778889999999999999864 433322221111111111110
Q ss_pred HhhhcchhhHHHHHHHhhcCCccccccchhhhHHHhhhcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001486 196 ELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIR 275 (1070)
Q Consensus 196 al~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~i~~~~~~~~~~~~a~~~~~~~~~~~~~y~~a~~~~~~~~~fE~ai~ 275 (1070)
.... +.+. ..+...+....+......+ +-..+++.+...++.+++
T Consensus 293 ~~~~--e~a~----------------------~~le~~~s~~~~~~~~ed~-----------ni~ael~l~~~q~d~~~~ 337 (895)
T KOG2076|consen 293 HNER--ERAA----------------------KALEGALSKEKDEASLEDL-----------NILAELFLKNKQSDKALM 337 (895)
T ss_pred hhHH--HHHH----------------------HHHHHHHhhccccccccHH-----------HHHHHHHHHhHHHHHhhH
Confidence 0000 0000 0111111100000000000 000111222223333321
Q ss_pred cc---------------------------CCCCCCCChHHHHH-HHHHHHHHHHcCCHHHHHHHHHHHhcc---CCCCHH
Q 001486 276 RP---------------------------YFHVKPLDDIQLKN-WHDYLSFAEKQGDFDWVVKLYERCLIP---CADYPE 324 (1070)
Q Consensus 276 ~~---------------------------~~~~~~~~p~~~~~-W~~yi~~~~~~g~~~~a~~~yerAL~~---~p~~~~ 324 (1070)
.+ +..+...-+..+.+ .....-+..+.+...+++ ....+.. .-...+
T Consensus 338 ~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~l--l~~l~~~n~~~~d~~d 415 (895)
T KOG2076|consen 338 KIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEAL--LHFLVEDNVWVSDDVD 415 (895)
T ss_pred HHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHH--HHHHHHhcCChhhhHH
Confidence 10 00000011112222 111111111222222222 2222221 245678
Q ss_pred HHHHHHHHHHhhCChhHHHHHHHHHHHHHhhhchHHHHHHHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHH
Q 001486 325 FWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMER 404 (1070)
Q Consensus 325 lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~eA~~~~~~al~~~~p~~~~~w~~~a~le~ 404 (1070)
+++..+..|...|++.+|...|..++....-.+..+|+..|+.+...|.+++|...|++++ ...|++.++-+.++.++.
T Consensus 416 L~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl-~~~p~~~D~Ri~Lasl~~ 494 (895)
T KOG2076|consen 416 LYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVL-ILAPDNLDARITLASLYQ 494 (895)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHH-hcCCCchhhhhhHHHHHH
Confidence 8999999999999999999999998876333455699999999999999999999999999 788999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHHHH----hhccCCCcHHHHHHHHHHHHhhcCCHHHHH
Q 001486 405 RLGNFVAACDTYKEALETAA----EQRKFHTLPLLYVQFSRLTYTTTGSADNAR 454 (1070)
Q Consensus 405 ~~g~~~~A~~vyekal~~~~----~~~~~~~~~~l~i~~A~~~~~~~g~~e~Ar 454 (1070)
+.|+.++|..+++..+.- . +.........+....+.++. ..|+.++=.
T Consensus 495 ~~g~~EkalEtL~~~~~~-D~~~~e~~a~~~e~ri~~~r~d~l~-~~gk~E~fi 546 (895)
T KOG2076|consen 495 QLGNHEKALETLEQIINP-DGRNAEACAWEPERRILAHRCDILF-QVGKREEFI 546 (895)
T ss_pred hcCCHHHHHHHHhcccCC-CccchhhccccHHHHHHHHHHHHHH-HhhhHHHHH
Confidence 999999888887765421 0 00112223356677777777 788877633
No 47
>PLN03077 Protein ECB2; Provisional
Probab=99.65 E-value=7.1e-13 Score=170.71 Aligned_cols=456 Identities=11% Similarity=0.049 Sum_probs=294.8
Q ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--cCCCHHHHHH
Q 001486 35 LDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQS--ATYSVDVWFH 112 (1070)
Q Consensus 35 ~s~~~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P~s~~lW~~ya~~e~~~~~~e~A~~lferAL~~--~P~s~~lW~~ 112 (1070)
.|...+..++..+-+. ++++.|+.+|+++.. .+.-.|..++..+.+.|.+++|..+|++++.. .| +...+..
T Consensus 220 ~~~~~~n~Li~~y~k~--g~~~~A~~lf~~m~~---~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~P-d~~ty~~ 293 (857)
T PLN03077 220 LDVDVVNALITMYVKC--GDVVSARLVFDRMPR---RDCISWNAMISGYFENGECLEGLELFFTMRELSVDP-DLMTITS 293 (857)
T ss_pred cccchHhHHHHHHhcC--CCHHHHHHHHhcCCC---CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-ChhHHHH
Confidence 3677888888888877 899999999998864 24456999999999999999999999998775 33 3344455
Q ss_pred HHHHHHhhCCChhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHcccHHHHHHHHHHHHccCCcCHHHH-HHHHHHHHH
Q 001486 113 YCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHY-YDSFKKLAG 191 (1070)
Q Consensus 113 y~~~~~~~~~~~~~ar~vferAL~~~p~~~~s~~lW~~yi~fe~~~~~~~~a~~iy~raL~~p~~~~~~~-~~~~~~~~~ 191 (1070)
.+...... ++.+.+++++..+++. |... ...+|...+....+.|.++.|+++|++... |....|.. ...|.+ .+
T Consensus 294 ll~a~~~~-g~~~~a~~l~~~~~~~-g~~~-d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-~d~~s~n~li~~~~~-~g 368 (857)
T PLN03077 294 VISACELL-GDERLGREMHGYVVKT-GFAV-DVSVCNSLIQMYLSLGSWGEAEKVFSRMET-KDAVSWTAMISGYEK-NG 368 (857)
T ss_pred HHHHHHhc-CChHHHHHHHHHHHHh-CCcc-chHHHHHHHHHHHhcCCHHHHHHHHhhCCC-CCeeeHHHHHHHHHh-CC
Confidence 55555555 7888888888877764 4333 356778888888888888888888887643 22111111 111111 12
Q ss_pred HHHHHhhhcchhhHHHHHHHhhcCCccccccchhhhHHHhhhcCcchhHHHHHHHHHHHH------------HHHHHHHH
Q 001486 192 AWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRF------------IGEQIYKE 259 (1070)
Q Consensus 192 ~~~eal~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~i~~~~~~~~~~~~a~~~~~~~~------------~~~~~y~~ 259 (1070)
.+++++.. +.+....+..+ +..-...++..+. ..+.+..+..+++... ..-..|.+
T Consensus 369 ~~~~A~~l--------f~~M~~~g~~P---d~~t~~~ll~a~~-~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k 436 (857)
T PLN03077 369 LPDKALET--------YALMEQDNVSP---DEITIASVLSACA-CLGDLDVGVKLHELAERKGLISYVVVANALIEMYSK 436 (857)
T ss_pred CHHHHHHH--------HHHHHHhCCCC---CceeHHHHHHHHh-ccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHH
Confidence 22222211 00000001000 0000011111000 0111111111111100 01112333
Q ss_pred HHHHHHHHHHHHHhhcccCCCCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhCCh
Q 001486 260 ASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGR 339 (1070)
Q Consensus 260 a~~~~~~~~~fE~ai~~~~~~~~~~~p~~~~~W~~yi~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~ 339 (1070)
..+..+++..|++..+ .+...|..++..+...|+.++|..+|++.+....-+...+..+...+.+.|.+
T Consensus 437 ~g~~~~A~~vf~~m~~-----------~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l 505 (857)
T PLN03077 437 CKCIDKALEVFHNIPE-----------KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGAL 505 (857)
T ss_pred cCCHHHHHHHHHhCCC-----------CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchH
Confidence 3333334444443221 23447888888888889999999999998865444556667777778888888
Q ss_pred hHHHHHHHHHHHHHhhhchHHHHHHHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001486 340 EIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEA 419 (1070)
Q Consensus 340 e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~eA~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~vyeka 419 (1070)
+.++.++..+++.-...+..+...+..++.+.|++++|+.+|... ..+...|...+..+.+.|..++|..+|+++
T Consensus 506 ~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M 580 (857)
T PLN03077 506 MCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRM 580 (857)
T ss_pred HHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999998888887533333345556677888999999999999875 234667999999999999999999999998
Q ss_pred HHHHHhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCC--cHHHHHHHHHHHHHcCCCcchhHHHHHHHHH
Q 001486 420 LETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPN--CKLLLEELIKFTMVHGGRSHISIVDAVISNA 497 (1070)
Q Consensus 420 l~~~~~~~~~~~~~~l~i~~A~~~~~~~g~~e~Ar~iyekaL~~~P~--~~~lw~~y~~~e~~~g~~~~~~~ar~l~ekA 497 (1070)
++. + ..| +...|..+-..+. +.|.+++|+++|+...+.++- +...|..++++..+.|..++ |..+|++.
T Consensus 581 ~~~-g---~~P-d~~T~~~ll~a~~-~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~e---A~~~~~~m 651 (857)
T PLN03077 581 VES-G---VNP-DEVTFISLLCACS-RSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTE---AYNFINKM 651 (857)
T ss_pred HHc-C---CCC-CcccHHHHHHHHh-hcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHH---HHHHHHHC
Confidence 874 1 112 2333444444455 789999999999999865433 45678888899888887665 55777764
Q ss_pred hccCCcccccCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcc
Q 001486 498 LYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQHIKLFPHTVR 549 (1070)
Q Consensus 498 l~~~~~~s~~l~~~~~~~l~~~~~~~e~~~G~~~~a~~~~~ra~~~~p~~~~ 549 (1070)
- +.| ...+|...+...+.+|+.+.+..+.++.+++.|++..
T Consensus 652 ~---------~~p--d~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~ 692 (857)
T PLN03077 652 P---------ITP--DPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVG 692 (857)
T ss_pred C---------CCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcc
Confidence 2 111 2578999999999999999999999999999998765
No 48
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.63 E-value=6.1e-12 Score=156.60 Aligned_cols=454 Identities=10% Similarity=-0.043 Sum_probs=283.3
Q ss_pred HhCCCCHHHHHH-HHHHHHhcCCCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcCCCHHH
Q 001486 31 AEGSLDFDEWTS-LLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDV 109 (1070)
Q Consensus 31 ~~nP~s~~~W~~-li~~~~~~~~~~~~~a~~vyeraL~~~P~s~~lW~~ya~~e~~~~~~e~A~~lferAL~~~P~s~~l 109 (1070)
..+|..+..-.. .+..++. |++..|+..|+++++.+|.+......++.+....|+.++|+.++++|+.-.|.....
T Consensus 28 ~~~p~~~~~~y~~aii~~r~---Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~ 104 (822)
T PRK14574 28 VVNPAMADTQYDSLIIRARA---GDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRG 104 (822)
T ss_pred ccCccchhHHHHHHHHHHhC---CCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHH
Confidence 445666654333 3333333 899999999999999999996444499998888999999999999999545555666
Q ss_pred HHHHHHHHHhhCCChhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHcccHHHHHHHHHHHHccCCcCHHHHHHHHHHH
Q 001486 110 WFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKL 189 (1070)
Q Consensus 110 W~~y~~~~~~~~~~~~~ar~vferAL~~~p~~~~s~~lW~~yi~fe~~~~~~~~a~~iy~raL~~p~~~~~~~~~~~~~~ 189 (1070)
-+..+..+... |++++|..+|+++++..|.+ ..++...+......++.++|.+.+.+++.............|...
T Consensus 105 llalA~ly~~~-gdyd~Aiely~kaL~~dP~n---~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~ 180 (822)
T PRK14574 105 LASAARAYRNE-KRWDQALALWQSSLKKDPTN---PDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNR 180 (822)
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHH
Confidence 66667788888 99999999999999998875 456666666667778999999999999875433222111111110
Q ss_pred -HHHHHHHhhhcchhhHHHHHHHhhcCCccccccchhhhHHHhhhcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001486 190 -AGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKIN 268 (1070)
Q Consensus 190 -~~~~~eal~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~i~~~~~~~~~~~~a~~~~~~~~~~~~~y~~a~~~~~~~~ 268 (1070)
.....+++. . ++.+++..+........+.......++...|.++.....
T Consensus 181 ~~~~~~~AL~--------~----------------------~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p 230 (822)
T PRK14574 181 ATDRNYDALQ--------A----------------------SSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENP 230 (822)
T ss_pred hcchHHHHHH--------H----------------------HHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCc
Confidence 011111111 1 111111111111110000000001111111111111100
Q ss_pred HHHHhhcccCCCCCCCChHHHHHHHHHHHHHHH-----------cC---CHHHHHHHHHHHhc---cCCCCHHHH----H
Q 001486 269 CFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEK-----------QG---DFDWVVKLYERCLI---PCADYPEFW----M 327 (1070)
Q Consensus 269 ~fE~ai~~~~~~~~~~~p~~~~~W~~yi~~~~~-----------~g---~~~~a~~~yerAL~---~~p~~~~lW----~ 327 (1070)
. .....-..|++....-+. .. -.+++..-|+..+. ..|.....| +
T Consensus 231 ~--------------~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~ 296 (822)
T PRK14574 231 N--------------LVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARI 296 (822)
T ss_pred c--------------ccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHH
Confidence 0 000011122222111110 01 23567777777776 345443343 4
Q ss_pred HHHHHHHhhCChhHHHHHHHHHHHHHhhhch-HHHHHHHHHHHHhCCHHHHHHHHHHHhhcc-----ChhhHHHHHHHHH
Q 001486 328 RYVDFMESKGGREIASYALDRATQIFLKRLP-VIHLFNARYKEQIGDTSAARAAFPESYIDS-----DSRFIEKVTFKAN 401 (1070)
Q Consensus 328 ~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p-~i~~~~a~~e~~~g~~~eA~~~~~~al~~~-----~p~~~~~w~~~a~ 401 (1070)
...-.+...|++.+++..|+..... ....| -+.-+.|..+...+..++|..+|..++..- .+..+.....+..
T Consensus 297 Drl~aL~~r~r~~~vi~~y~~l~~~-~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~y 375 (822)
T PRK14574 297 DRLGALLVRHQTADLIKEYEAMEAE-GYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYY 375 (822)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhhhc-CCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHH
Confidence 4555677788899999999665532 21334 245556778889999999999999987422 1112221233333
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHhh---------ccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHH
Q 001486 402 MERRLGNFVAACDTYKEALETAAEQ---------RKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLLLE 472 (1070)
Q Consensus 402 le~~~g~~~~A~~vyekal~~~~~~---------~~~~~~~~l~i~~A~~~~~~~g~~e~Ar~iyekaL~~~P~~~~lw~ 472 (1070)
.+...|.+++|..+.++..+..+.. ...+....+....|.++. ..|++.+|.+.+++.+...|.+..+++
T Consensus 376 A~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~-~~gdl~~Ae~~le~l~~~aP~n~~l~~ 454 (822)
T PRK14574 376 SLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLV-ALNDLPTAQKKLEDLSSTAPANQNLRI 454 (822)
T ss_pred HHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 3445689999999999998852210 113344466777788777 899999999999999999999999999
Q ss_pred HHHHHHHHcCCCcchhHHHHHHHHHhccCCcccccCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcc
Q 001486 473 ELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQHIKLFPHTVR 549 (1070)
Q Consensus 473 ~y~~~e~~~g~~~~~~~ar~l~ekAl~~~~~~s~~l~~~~~~~l~~~~~~~e~~~G~~~~a~~~~~ra~~~~p~~~~ 549 (1070)
.+++++...|...+ |+.+++.++...| ++ ..+....+......|++..|.++.+..+..+|++..
T Consensus 455 ~~A~v~~~Rg~p~~---A~~~~k~a~~l~P--------~~-~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~ 519 (822)
T PRK14574 455 ALASIYLARDLPRK---AEQELKAVESLAP--------RS-LILERAQAETAMALQEWHQMELLTDDVISRSPEDIP 519 (822)
T ss_pred HHHHHHHhcCCHHH---HHHHHHHHhhhCC--------cc-HHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchh
Confidence 99999999998765 5688888875333 32 233334444446679999999999999999999764
No 49
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=99.62 E-value=1.3e-12 Score=142.66 Aligned_cols=413 Identities=14% Similarity=0.162 Sum_probs=261.6
Q ss_pred chHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCH------HHHHHH
Q 001486 22 GKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSI------DKVVEV 95 (1070)
Q Consensus 22 ~~~~le~~l~~nP~s~~~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P~s~~lW~~ya~~e~~~~~~------e~A~~l 95 (1070)
..+.||+...-.|.-..+|..|+.--.+. +++..+..+|-|+|+.- .+.++|..|++.-.+.++. ....++
T Consensus 61 ~re~yeq~~~pfp~~~~aw~ly~s~ELA~--~df~svE~lf~rCL~k~-l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~a 137 (660)
T COG5107 61 EREMYEQLSSPFPIMEHAWRLYMSGELAR--KDFRSVESLFGRCLKKS-LNLDLWMLYLEYIRRVNNLITGQKRFKIYEA 137 (660)
T ss_pred HHHHHHHhcCCCccccHHHHHHhcchhhh--hhHHHHHHHHHHHHhhh-ccHhHHHHHHHHHHhhCcccccchhhhhHHH
Confidence 34589999999999999999998743333 78999999999999876 6699999999987665421 112223
Q ss_pred HHH---HHHhcCCCHHHHHHHHHHHHhhC--------CChhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHcccHHHH
Q 001486 96 FER---AVQSATYSVDVWFHYCSLSMSTF--------EDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSL 164 (1070)
Q Consensus 96 fer---AL~~~P~s~~lW~~y~~~~~~~~--------~~~~~ar~vferAL~~~p~~~~s~~lW~~yi~fe~~~~~~~~a 164 (1070)
|+- +.-+.|.+..+|-.|+.|+.... .+++++|+.|.|||.. |.+- -.++|..|-.||.+.+. -+|
T Consensus 138 yefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~t-P~~n-leklW~dy~~fE~e~N~-~Ta 214 (660)
T COG5107 138 YEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQT-PMGN-LEKLWKDYENFELELNK-ITA 214 (660)
T ss_pred HHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcC-cccc-HHHHHHHHHHHHHHHHH-HHH
Confidence 332 34456899999999999986531 2478899999999964 5543 46999999999987643 233
Q ss_pred HHHHHHHHccCCcCHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHhhcCCccccccchhhhHHHhhhcCcchhHHHHH
Q 001486 165 AQIFVQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSK 244 (1070)
Q Consensus 165 ~~iy~raL~~p~~~~~~~~~~~~~~~~~~~eal~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~i~~~~~~~~~~~~a~ 244 (1070)
|++.-.. .| -+......|.++..-.+ .+.... .+..-...+ ... ..+--|..+-+|-...+...-.+
T Consensus 215 rKfvge~--sp--~ym~ar~~yqe~~nlt~-Gl~v~~-----~~~~Rt~nK-~~r--~s~S~WlNwIkwE~en~l~L~~~ 281 (660)
T COG5107 215 RKFVGET--SP--IYMSARQRYQEIQNLTR-GLSVKN-----PINLRTANK-AAR--TSDSNWLNWIKWEMENGLKLGGR 281 (660)
T ss_pred HHHhccc--CH--HHHHHHHHHHHHHHHhc-cccccC-----chhhhhhcc-ccc--cccchhhhHhhHhhcCCcccCCC
Confidence 3331111 01 01111222333222110 000000 000000000 000 00001221212211111000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHH
Q 001486 245 AIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPE 324 (1070)
Q Consensus 245 ~~~~~~~~~~~~y~~a~~~~~~~~~fE~ai~~~~~~~~~~~p~~~~~W~~yi~~~~~~g~~~~a~~~yerAL~~~p~~~~ 324 (1070)
.. ..+.--.|+.++.- + +-..++|+.|..+....++..+|..+.+|++..+|.
T Consensus 282 -~~---------------~qRi~y~~~q~~~y--~------~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps--- 334 (660)
T COG5107 282 -PH---------------EQRIHYIHNQILDY--F------YYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS--- 334 (660)
T ss_pred -cH---------------HHHHHHHHHHHHHH--h------hhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---
Confidence 00 00001123333321 1 223469999999999999999999999999988776
Q ss_pred HHHHHHHHHHhhCChhHHHHHHHHHHHHHhhh--------------ch---------------HHHHHHHHHHHHhCCHH
Q 001486 325 FWMRYVDFMESKGGREIASYALDRATQIFLKR--------------LP---------------VIHLFNARYKEQIGDTS 375 (1070)
Q Consensus 325 lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~--------------~p---------------~i~~~~a~~e~~~g~~~ 375 (1070)
+-+.|+.+++..++-+.....|++.+..+.+. ++ -+||-+.....+..-++
T Consensus 335 L~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~ 414 (660)
T COG5107 335 LTMFLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLE 414 (660)
T ss_pred hheeHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHH
Confidence 78888999998888888888888887753211 11 25665666667777889
Q ss_pred HHHHHHHHHhhccChhhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhcCCHHHHH
Q 001486 376 AARAAFPESYIDSDSRFIEKVTFKANMER-RLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNAR 454 (1070)
Q Consensus 376 eA~~~~~~al~~~~p~~~~~w~~~a~le~-~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~g~~e~Ar 454 (1070)
.||++|.++.+.- --..++++..|-+|. ..|+...|..+|+-++..+ +..+-....|-.++. ..||-+.||
T Consensus 415 aaR~~F~k~rk~~-~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f------~d~~~y~~kyl~fLi-~inde~nar 486 (660)
T COG5107 415 AARKLFIKLRKEG-IVGHHVYIYCAFIEYYATGDRATAYNIFELGLLKF------PDSTLYKEKYLLFLI-RINDEENAR 486 (660)
T ss_pred HHHHHHHHHhccC-CCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhC------CCchHHHHHHHHHHH-HhCcHHHHH
Confidence 9999999997432 223345555555544 3589999999999999984 555555555555565 899999999
Q ss_pred HHHHHHHhhCCCc--HHHHHHHHHHHHHcCCCcchh
Q 001486 455 DILIDGIKHVPNC--KLLLEELIKFTMVHGGRSHIS 488 (1070)
Q Consensus 455 ~iyekaL~~~P~~--~~lw~~y~~~e~~~g~~~~~~ 488 (1070)
.+|++++.+.-+. ..+|..++++|...|+...+-
T Consensus 487 aLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~ 522 (660)
T COG5107 487 ALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVY 522 (660)
T ss_pred HHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHH
Confidence 9999999876665 789999999999999987643
No 50
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=99.62 E-value=1.2e-11 Score=137.92 Aligned_cols=437 Identities=13% Similarity=0.164 Sum_probs=249.5
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHh------cCC------------CcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh
Q 001486 25 GLEEFIAEGSLDFDEWTSLLSEIEN------SCP------------DDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARL 86 (1070)
Q Consensus 25 ~le~~l~~nP~s~~~W~~li~~~~~------~~~------------~~~~~a~~vyeraL~~~P~s~~lW~~ya~~e~~~ 86 (1070)
.||..|.+--.++.-++.||.+-.. .+. .-..++..+|++|+..|+.++++|..|+.+..+.
T Consensus 39 ~fE~kL~rr~~~i~Dfi~YI~YE~nl~~lr~kR~Kk~~~k~S~sd~si~~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~ 118 (568)
T KOG2396|consen 39 DFELKLQRRTLSIEDFINYIQYEINLEELRAKRRKKKRVKYSFSDDSIPNRIVFLYRRATNRFNGDVKLWLSYIAFCKKK 118 (568)
T ss_pred HHHHHHccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence 5777888877888888888874211 000 1124567899999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHcccHHHHHH
Q 001486 87 CSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQ 166 (1070)
Q Consensus 87 ~~~e~A~~lferAL~~~P~s~~lW~~y~~~~~~~~~~~~~ar~vferAL~~~p~~~~s~~lW~~yi~fe~~~~~~~~a~~ 166 (1070)
+.+-++.++|..+|..+|.+++||+.-|.++.+..-+++.||.+|-|+|+..|. +..||..|.++|... +.+
T Consensus 119 ~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npd---sp~Lw~eyfrmEL~~-----~~K 190 (568)
T KOG2396|consen 119 KTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPD---SPKLWKEYFRMELMY-----AEK 190 (568)
T ss_pred cchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCC---ChHHHHHHHHHHHHH-----HHH
Confidence 999999999999999999999999999999998844599999999999998776 789999999999854 333
Q ss_pred HHHHH--HccCCcCHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHhhcCCccccccchhhhHHHhhhcCcchhHHHHH
Q 001486 167 IFVQT--LRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSK 244 (1070)
Q Consensus 167 iy~ra--L~~p~~~~~~~~~~~~~~~~~~~eal~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~i~~~~~~~~~~~~a~ 244 (1070)
+..|. +.....+.. ...+.+...+.....+ .+. +.+. ......
T Consensus 191 l~~rr~~~g~~~~~~~---~eie~ge~~~~~~~~s-----~~~-----~~~~------~k~~e~---------------- 235 (568)
T KOG2396|consen 191 LRNRREELGLDSSDKD---EEIERGELAWINYANS-----VDI-----IKGA------VKSVEL---------------- 235 (568)
T ss_pred HHHHHHHhccccchhH---HHHHHHHHHHHhhccc-----hhh-----hhcc------hhhcch----------------
Confidence 33222 322211110 0011110000000000 000 0000 000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCChHHHHHHHHHHHHH----H---------------HcCCH
Q 001486 245 AIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFA----E---------------KQGDF 305 (1070)
Q Consensus 245 ~~~~~~~~~~~~y~~a~~~~~~~~~fE~ai~~~~~~~~~~~p~~~~~W~~yi~~~----~---------------~~g~~ 305 (1070)
.....++.++++-+.+... + ....|.+...|...+.-+ . ...+.
T Consensus 236 -------~~~~~~d~~kel~k~i~d~---~-------~~~~~~np~~~~~laqr~l~i~~~tdl~~~~~~~~~~~~~~k~ 298 (568)
T KOG2396|consen 236 -------SVAEKFDFLKELQKNIIDD---L-------QSKAPDNPLLWDDLAQRELEILSQTDLQHTDNQAKAVEVGSKE 298 (568)
T ss_pred -------HHHHHHHHHHHHHHHHHHH---H-------hccCCCCCccHHHHHHHHHHHHHHhhccchhhhhhchhcchhH
Confidence 0000111112211111110 0 001222333444333211 0 01134
Q ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHhhCC------hhHHHHHHHHHHHHHhhhchHHHHHHHHHHHHhCCHHHHHH
Q 001486 306 DWVVKLYERCLIPCADYPEFWMRYVDFMESKGG------REIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARA 379 (1070)
Q Consensus 306 ~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~------~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~eA~~ 379 (1070)
++...+|+.++...+. ...|-.|+.++...-. +....-+|+++... ..-.+...-.|+..........+|+.
T Consensus 299 s~~~~v~ee~v~~l~t-~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~-~~l~~~~~~~ys~~~l~~~t~~~~r~ 376 (568)
T KOG2396|consen 299 SRCCAVYEEAVKTLPT-ESMWECYITFCLERFTFLRGKRILHTMCVFRKAHEL-KLLSECLYKQYSVLLLCLNTLNEARE 376 (568)
T ss_pred HHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHh-cccccchHHHHHHHHHHHhccchHhH
Confidence 5778999999987654 4788888877655422 23444555555543 11112233333333333333334444
Q ss_pred HHHHHhhccChhhHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhcCCHHHHHH--H
Q 001486 380 AFPESYIDSDSRFIEKVTFKANMERR-LGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARD--I 456 (1070)
Q Consensus 380 ~~~~al~~~~p~~~~~w~~~a~le~~-~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~g~~e~Ar~--i 456 (1070)
+-.+.+.+.-.++..+|+.+...+.+ ..++ .-+|+++...+.. .-....++.|+..- +...+..++. |
T Consensus 377 ~a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~---q~~f~~l~n~~r~----~~~s~~~~~w~s~~--~~dsl~~~~~~~I 447 (568)
T KOG2396|consen 377 VAVKLTTELFRDSGKMWQLKLQVLIESKSDF---QMLFEELFNHLRK----QVCSELLISWASAS--EGDSLQEDTLDLI 447 (568)
T ss_pred HHHHhhHHHhcchHHHHHHHHHHHHhhcchh---HHHHHHHHHHHHH----HhcchhHHHHHHHh--hccchhHHHHHHH
Confidence 44444323334678889888776653 3333 2333332222111 11223444444322 1222333332 2
Q ss_pred HHHHHh-hCCCcHHHHHHHHHHHHHcCCCcchhHHHHHHHHHhccCCcccccCChhhHHHHHHHHHHHHH---HhCCHHH
Q 001486 457 LIDGIK-HVPNCKLLLEELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLD---LCGTIHD 532 (1070)
Q Consensus 457 yekaL~-~~P~~~~lw~~y~~~e~~~g~~~~~~~ar~l~ekAl~~~~~~s~~l~~~~~~~l~~~~~~~e~---~~G~~~~ 532 (1070)
+..+++ ..++...+-..|+++....|..+. ||.+|.+... +| ..+.+|+..-+.||. .+| +..
T Consensus 448 i~a~~s~~~~~~~tl~s~~l~~~~e~~~~~~---ark~y~~l~~--------lp-p~sl~l~r~miq~e~~~~sc~-l~~ 514 (568)
T KOG2396|consen 448 ISALLSVIGADSVTLKSKYLDWAYESGGYKK---ARKVYKSLQE--------LP-PFSLDLFRKMIQFEKEQESCN-LAN 514 (568)
T ss_pred HHHHHHhcCCceeehhHHHHHHHHHhcchHH---HHHHHHHHHh--------CC-CccHHHHHHHHHHHhhHhhcC-chH
Confidence 333333 256777888899999998887766 6799988763 22 346789999999995 455 899
Q ss_pred HHHHHHHHHHhCC
Q 001486 533 IRNAWNQHIKLFP 545 (1070)
Q Consensus 533 a~~~~~ra~~~~p 545 (1070)
++++|++++..+=
T Consensus 515 ~r~~yd~a~~~fg 527 (568)
T KOG2396|consen 515 IREYYDRALREFG 527 (568)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999998885
No 51
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.62 E-value=2.9e-12 Score=161.26 Aligned_cols=431 Identities=11% Similarity=0.029 Sum_probs=296.7
Q ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcCCCHHHHHHH
Q 001486 35 LDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAE-FPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHY 113 (1070)
Q Consensus 35 ~s~~~W~~li~~~~~~~~~~~~~a~~vyeraL~~-~P~s~~lW~~ya~~e~~~~~~e~A~~lferAL~~~P~s~~lW~~y 113 (1070)
-|...|..++..+... ++++.++.++..+.+. +.-+...|..++..+.+.|++++|+.+|++... .++..|..+
T Consensus 121 ~~~~t~~~ll~a~~~~--~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~---~~~~t~n~l 195 (697)
T PLN03081 121 LPASTYDALVEACIAL--KSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE---RNLASWGTI 195 (697)
T ss_pred CCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC---CCeeeHHHH
Confidence 4778888888888776 8899999999998874 233678899999999999999999999998864 367789999
Q ss_pred HHHHHhhCCChhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHcccHHHHHHHHHHHHccCCcCHH----HHHHHHHHH
Q 001486 114 CSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLH----HYYDSFKKL 189 (1070)
Q Consensus 114 ~~~~~~~~~~~~~ar~vferAL~~~p~~~~s~~lW~~yi~fe~~~~~~~~a~~iy~raL~~p~~~~~----~~~~~~~~~ 189 (1070)
+.-+... |++++|.++|++.++. |... ....|...+......+....++.++..+++....... .+...|.+
T Consensus 196 i~~~~~~-g~~~~A~~lf~~M~~~-g~~p-~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k- 271 (697)
T PLN03081 196 IGGLVDA-GNYREAFALFREMWED-GSDA-EPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSK- 271 (697)
T ss_pred HHHHHHC-cCHHHHHHHHHHHHHh-CCCC-ChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHH-
Confidence 9988888 9999999999999865 3333 2445566666666677788888887766643211101 11111111
Q ss_pred HHHHHHHhhhcchhhHHHHHHHhhcCCccccccchhhhHHHhhhcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001486 190 AGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINC 269 (1070)
Q Consensus 190 ~~~~~eal~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~i~~~~~~~~~~~~a~~~~~~~~~~~~~y~~a~~~~~~~~~ 269 (1070)
.+.++++.. ++..+.+. +......+ -..|.+.....+++..
T Consensus 272 ~g~~~~A~~------------------------------vf~~m~~~--~~vt~n~l-------i~~y~~~g~~~eA~~l 312 (697)
T PLN03081 272 CGDIEDARC------------------------------VFDGMPEK--TTVAWNSM-------LAGYALHGYSEEALCL 312 (697)
T ss_pred CCCHHHHHH------------------------------HHHhCCCC--ChhHHHHH-------HHHHHhCCCHHHHHHH
Confidence 111121111 11111100 00000000 0012222222223333
Q ss_pred HHHhhcccCCCCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhhCChhHHHHHHHH
Q 001486 270 FENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPC-ADYPEFWMRYVDFMESKGGREIASYALDR 348 (1070)
Q Consensus 270 fE~ai~~~~~~~~~~~p~~~~~W~~yi~~~~~~g~~~~a~~~yerAL~~~-p~~~~lW~~ya~~l~~~g~~e~A~~il~r 348 (1070)
|++..+. ...|+ ...+..++..+.+.|+++.+..+++.+++.. +.+..++..++..|.+.|++++|+.+|++
T Consensus 313 f~~M~~~------g~~pd-~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~ 385 (697)
T PLN03081 313 YYEMRDS------GVSID-QFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDR 385 (697)
T ss_pred HHHHHHc------CCCCC-HHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHh
Confidence 3333221 01222 3367778888888999999999999999763 55677889999999999999999999998
Q ss_pred HHHHHhhhchHHHHHHHHHHHHhCCHHHHHHHHHHHhhc-cChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhc
Q 001486 349 ATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYID-SDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQR 427 (1070)
Q Consensus 349 Al~~~~~~~p~i~~~~a~~e~~~g~~~eA~~~~~~al~~-~~p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~ 427 (1070)
..+. +...|......+.+.|+.++|.++|++..+. +.|+ ..+|...+......|.+++|..+|+.+.+..+
T Consensus 386 m~~~----d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g--- 457 (697)
T PLN03081 386 MPRK----NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPN-HVTFLAVLSACRYSGLSEQGWEIFQSMSENHR--- 457 (697)
T ss_pred CCCC----CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcC---
Confidence 7542 4457888888889999999999999998743 3444 44577777778889999999999999987521
Q ss_pred cCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCCcchhHHHHHHHHHhccCCccccc
Q 001486 428 KFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLLLEELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKV 507 (1070)
Q Consensus 428 ~~~~~~~l~i~~A~~~~~~~g~~e~Ar~iyekaL~~~P~~~~lw~~y~~~e~~~g~~~~~~~ar~l~ekAl~~~~~~s~~ 507 (1070)
...+...|..+..++. +.|++++|.++|++. ...| +..+|..++.....+|+.+. ++.++++.+...|
T Consensus 458 -~~p~~~~y~~li~~l~-r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~---a~~~~~~l~~~~p----- 525 (697)
T PLN03081 458 -IKPRAMHYACMIELLG-REGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKNLEL---GRLAAEKLYGMGP----- 525 (697)
T ss_pred -CCCCccchHhHHHHHH-hcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCcHH---HHHHHHHHhCCCC-----
Confidence 1123346777777787 999999999999864 2233 55679999988888888765 5578888875333
Q ss_pred CChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Q 001486 508 FSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQHIKLF 544 (1070)
Q Consensus 508 l~~~~~~~l~~~~~~~e~~~G~~~~a~~~~~ra~~~~ 544 (1070)
+. ...|...++..-..|.+++|.++++++.+.-
T Consensus 526 ---~~-~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g 558 (697)
T PLN03081 526 ---EK-LNNYVVLLNLYNSSGRQAEAAKVVETLKRKG 558 (697)
T ss_pred ---CC-CcchHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 21 2346667777788999999999998877653
No 52
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.59 E-value=2.7e-13 Score=156.07 Aligned_cols=290 Identities=13% Similarity=0.096 Sum_probs=167.2
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChhHHHHHHHHH
Q 001486 55 IEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRA 134 (1070)
Q Consensus 55 ~~~a~~vyeraL~~~P~s~~lW~~ya~~e~~~~~~e~A~~lferAL~~~P~s~~lW~~y~~~~~~~~~~~~~ar~vferA 134 (1070)
..+|...|++.-.+.++..-....+++.++++.+|++|+++|+++=+..|..++--.-|--.+.-. .+ +-+...+-+-
T Consensus 335 ~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHL-q~-~v~Ls~Laq~ 412 (638)
T KOG1126|consen 335 CREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHL-QD-EVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHH-Hh-hHHHHHHHHH
Confidence 456777777755666666655556667777777777788777777776665443222221111111 00 1122222222
Q ss_pred HHHcCCCCCchHHHHHHHHHHHHcccHHHHHHHHHHHHccCCcCHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHhhc
Q 001486 135 LSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVLE 214 (1070)
Q Consensus 135 L~~~p~~~~s~~lW~~yi~fe~~~~~~~~a~~iy~raL~~p~~~~~~~~~~~~~~~~~~~eal~~~~~~~~~~~~~~~~~ 214 (1070)
| +..+..+..-|-...++..-.++.+.|++.|+|++.+.+.
T Consensus 413 L--i~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~------------------------------------- 453 (638)
T KOG1126|consen 413 L--IDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR------------------------------------- 453 (638)
T ss_pred H--HhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-------------------------------------
Confidence 2 1123335667777777777677777777777777764321
Q ss_pred CCccccccchhhhHHHhhhcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCChHHHHHHHH
Q 001486 215 GEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHD 294 (1070)
Q Consensus 215 ~~l~~~~~~~e~~~~i~~~~~~~~~~~~a~~~~~~~~~~~~~y~~a~~~~~~~~~fE~ai~~~~~~~~~~~p~~~~~W~~ 294 (1070)
....+..
T Consensus 454 -------------------------------------------------------------------------faYayTL 460 (638)
T KOG1126|consen 454 -------------------------------------------------------------------------FAYAYTL 460 (638)
T ss_pred -------------------------------------------------------------------------cchhhhh
Confidence 0000100
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhhhchHHHHHHHHHHHHhCCH
Q 001486 295 YLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDT 374 (1070)
Q Consensus 295 yi~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~ 374 (1070)
++--.....++|.|...|++||..+|.+..+|+-+|.+|.+.++++.|.-.|++|+.+ .|.+-.+.+..+.++.+.|+.
T Consensus 461 lGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I-NP~nsvi~~~~g~~~~~~k~~ 539 (638)
T KOG1126|consen 461 LGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEI-NPSNSVILCHIGRIQHQLKRK 539 (638)
T ss_pred cCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcC-CccchhHHhhhhHHHHHhhhh
Confidence 0000011223555666666666666666666666666666666666666666666665 444445556666666666666
Q ss_pred HHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhcCCHHHHH
Q 001486 375 SAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNAR 454 (1070)
Q Consensus 375 ~eA~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~g~~e~Ar 454 (1070)
|+|+.+|++|+ .++|.++..-+..+.++..++++++|...+|+.-+. .|....++..+|+++. +.|..+.|.
T Consensus 540 d~AL~~~~~A~-~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~------vP~es~v~~llgki~k-~~~~~~~Al 611 (638)
T KOG1126|consen 540 DKALQLYEKAI-HLDPKNPLCKYHRASILFSLGRYVEALQELEELKEL------VPQESSVFALLGKIYK-RLGNTDLAL 611 (638)
T ss_pred hHHHHHHHHHH-hcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHh------CcchHHHHHHHHHHHH-HHccchHHH
Confidence 66666666666 555655555555666666666666666666666555 3555666666666665 666666666
Q ss_pred HHHHHHHhhCCCc
Q 001486 455 DILIDGIKHVPNC 467 (1070)
Q Consensus 455 ~iyekaL~~~P~~ 467 (1070)
.-|--|+..+|.-
T Consensus 612 ~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 612 LHFSWALDLDPKG 624 (638)
T ss_pred HhhHHHhcCCCcc
Confidence 6666666666643
No 53
>PLN03077 Protein ECB2; Provisional
Probab=99.56 E-value=7.3e-12 Score=161.38 Aligned_cols=192 Identities=9% Similarity=0.025 Sum_probs=152.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhhhchHHHHHHHHHHHH
Q 001486 291 NWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQ 370 (1070)
Q Consensus 291 ~W~~yi~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~ 370 (1070)
+...+++.+.+.|+.++|..+|++. ..+...|..++..|...|+.++|..+|++..+.-..-+...+......+.+
T Consensus 526 ~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~ 601 (857)
T PLN03077 526 LPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSR 601 (857)
T ss_pred echHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhh
Confidence 4567888889999999999999986 567789999999999999999999999998764211122344444455778
Q ss_pred hCCHHHHHHHHHHHhhc--cChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhcC
Q 001486 371 IGDTSAARAAFPESYID--SDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTG 448 (1070)
Q Consensus 371 ~g~~~eA~~~~~~al~~--~~p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~g 448 (1070)
.|.+++|+.+|+...+. +.| ....|...++++.+.|++++|.+++++.- . ..+..+|..+-..+. ..|
T Consensus 602 ~g~v~ea~~~f~~M~~~~gi~P-~~~~y~~lv~~l~r~G~~~eA~~~~~~m~-~-------~pd~~~~~aLl~ac~-~~~ 671 (857)
T PLN03077 602 SGMVTQGLEYFHSMEEKYSITP-NLKHYACVVDLLGRAGKLTEAYNFINKMP-I-------TPDPAVWGALLNACR-IHR 671 (857)
T ss_pred cChHHHHHHHHHHHHHHhCCCC-chHHHHHHHHHHHhCCCHHHHHHHHHHCC-C-------CCCHHHHHHHHHHHH-HcC
Confidence 99999999999988732 334 35678888999999999999999998752 1 223566666666555 789
Q ss_pred CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCCcchhHHHHHHHH
Q 001486 449 SADNARDILIDGIKHVPNCKLLLEELIKFTMVHGGRSHISIVDAVISN 496 (1070)
Q Consensus 449 ~~e~Ar~iyekaL~~~P~~~~lw~~y~~~e~~~g~~~~~~~ar~l~ek 496 (1070)
+.+.|..+.+++++..|++...+..++.+....|.++++.++|..++.
T Consensus 672 ~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~ 719 (857)
T PLN03077 672 HVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRE 719 (857)
T ss_pred ChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999888777776644
No 54
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.55 E-value=2.5e-11 Score=142.72 Aligned_cols=319 Identities=12% Similarity=0.027 Sum_probs=201.1
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHH----------hcCCCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHHHH
Q 001486 26 LEEFIAEGSLDFDEWTSLLSEIE----------NSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEV 95 (1070)
Q Consensus 26 le~~l~~nP~s~~~W~~li~~~~----------~~~~~~~~~a~~vyeraL~~~P~s~~lW~~ya~~e~~~~~~e~A~~l 95 (1070)
+-..+..-|..+..|..--+..+ ....|+++.|++.+.++.+..|...-.+...++.....|+++.|...
T Consensus 61 l~~~~~~~p~~~~~~~~~r~~~k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~ 140 (409)
T TIGR00540 61 GLRRFFRLGAHSRGWFSGRKRRKAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQH 140 (409)
T ss_pred HHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 34455567877877865432211 11338999999999999999999888888889999999999999999
Q ss_pred HHHHHHhcCCCH-HHHHHHHHHHHhhCCChhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHcccHHHHHHHHHHHHcc
Q 001486 96 FERAVQSATYSV-DVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRF 174 (1070)
Q Consensus 96 ferAL~~~P~s~-~lW~~y~~~~~~~~~~~~~ar~vferAL~~~p~~~~s~~lW~~yi~fe~~~~~~~~a~~iy~raL~~ 174 (1070)
|+++++..|.+. .+.+.++++.+.. ++++.|+..+++.++..|. +..++..+.......|+++.+.+++.+.++.
T Consensus 141 l~~a~~~~p~~~l~~~~~~a~l~l~~-~~~~~Al~~l~~l~~~~P~---~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~ 216 (409)
T TIGR00540 141 LEEAAELAGNDNILVEIARTRILLAQ-NELHAARHGVDKLLEMAPR---HKEVLKLAEEAYIRSGAWQALDDIIDNMAKA 216 (409)
T ss_pred HHHHHHhCCcCchHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 999999988874 6888899999999 9999999999999998887 4578888889999999999999998888764
Q ss_pred CCcCHHHHHH-HHHHHHHHHHHHhhhcchhhHHHHHHHhhcCCccccccchhhhHHHhhhcCcchhHHHHHHHHHHHHHH
Q 001486 175 PSKKLHHYYD-SFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIG 253 (1070)
Q Consensus 175 p~~~~~~~~~-~~~~~~~~~~eal~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~i~~~~~~~~~~~~a~~~~~~~~~~ 253 (1070)
-..+-..+.. ....+.+.+..
T Consensus 217 ~~~~~~~~~~l~~~a~~~~l~~---------------------------------------------------------- 238 (409)
T TIGR00540 217 GLFDDEEFADLEQKAEIGLLDE---------------------------------------------------------- 238 (409)
T ss_pred CCCCHHHHHHHHHHHHHHHHHH----------------------------------------------------------
Confidence 2111110000 00000000000
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCCCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHH----HHH
Q 001486 254 EQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFW----MRY 329 (1070)
Q Consensus 254 ~~~y~~a~~~~~~~~~fE~ai~~~~~~~~~~~p~~~~~W~~yi~~~~~~g~~~~a~~~yerAL~~~p~~~~lW----~~y 329 (1070)
...+.+ ...++..... .....+++..++..++..+...|+++.|..+++++++..|++.... ..+
T Consensus 239 -~~~~~~------~~~L~~~~~~----~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~ 307 (409)
T TIGR00540 239 -AMADEG------IDGLLNWWKN----QPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPI 307 (409)
T ss_pred -HHHhcC------HHHHHHHHHH----CCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHh
Confidence 000000 0000000000 0001123455677777777777777777777777777666665421 111
Q ss_pred HHHHHhhCChhHHHHHHHHHHHHHhhhch--HHHHHHHHHHHHhCCHHHHHHHHHH--HhhccChhhHHHHHHHHHHHHH
Q 001486 330 VDFMESKGGREIASYALDRATQIFLKRLP--VIHLFNARYKEQIGDTSAARAAFPE--SYIDSDSRFIEKVTFKANMERR 405 (1070)
Q Consensus 330 a~~l~~~g~~e~A~~il~rAl~~~~~~~p--~i~~~~a~~e~~~g~~~eA~~~~~~--al~~~~p~~~~~w~~~a~le~~ 405 (1070)
+ ....++.+.++..++++++. .|++| .+...+|+++.+.|++++|++.|++ ++ ...|+... +..++.++..
T Consensus 308 ~--~l~~~~~~~~~~~~e~~lk~-~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~-~~~p~~~~-~~~La~ll~~ 382 (409)
T TIGR00540 308 P--RLKPEDNEKLEKLIEKQAKN-VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAAC-KEQLDAND-LAMAADAFDQ 382 (409)
T ss_pred h--hcCCCChHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHh-hcCCCHHH-HHHHHHHHHH
Confidence 1 12234556666666666665 55566 5555666666666666666666663 33 33444333 3466666666
Q ss_pred cCCHHHHHHHHHHHHHH
Q 001486 406 LGNFVAACDTYKEALET 422 (1070)
Q Consensus 406 ~g~~~~A~~vyekal~~ 422 (1070)
.|+.++|+.+|++++..
T Consensus 383 ~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 383 AGDKAEAAAMRQDSLGL 399 (409)
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 66666666666666655
No 55
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=99.54 E-value=2.9e-14 Score=157.97 Aligned_cols=133 Identities=22% Similarity=0.386 Sum_probs=118.2
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 001486 39 EWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARL-CSIDKVVEVFERAVQSATYSVDVWFHYCSLS 117 (1070)
Q Consensus 39 ~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P~s~~lW~~ya~~e~~~-~~~e~A~~lferAL~~~P~s~~lW~~y~~~~ 117 (1070)
.|+.|+++++.. +.++.||.+|++|++..+.++.+|..+|.+|... ++.+.|+.|||++|+.+|.++++|+.|++|+
T Consensus 3 v~i~~m~~~~r~--~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRT--EGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 699999999887 8899999999999987778899999999999985 5667799999999999999999999999999
Q ss_pred HhhCCChhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHcccHHHHHHHHHHHHcc
Q 001486 118 MSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRF 174 (1070)
Q Consensus 118 ~~~~~~~~~ar~vferAL~~~p~~~~s~~lW~~yi~fe~~~~~~~~a~~iy~raL~~ 174 (1070)
+.. ++.+.||.+|+|++..++.+..+..||..|++||...|+.+.+++|+.|+...
T Consensus 81 ~~~-~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 81 IKL-NDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHT-T-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHh-CcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999 99999999999999998876545689999999999999999999999999764
No 56
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.54 E-value=9.7e-13 Score=151.50 Aligned_cols=194 Identities=13% Similarity=0.042 Sum_probs=179.0
Q ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhhhchHHHHH
Q 001486 284 LDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLF 363 (1070)
Q Consensus 284 ~~p~~~~~W~~yi~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~ 363 (1070)
.+|+....|...+.++--+++.+.|++.|+||+..+|.+.-.+..+|.-+.....+|.|...|++|+.+ .+..-++|+-
T Consensus 416 ~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~-~~rhYnAwYG 494 (638)
T KOG1126|consen 416 TDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV-DPRHYNAWYG 494 (638)
T ss_pred hCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC-CchhhHHHHh
Confidence 456777899999999999999999999999999999999888888888888888899999999999997 5555579999
Q ss_pred HHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHH
Q 001486 364 NARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLT 443 (1070)
Q Consensus 364 ~a~~e~~~g~~~eA~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~ 443 (1070)
.|..+.+.++++.|.-.|++|+ +++|....+....+.++.++|..|+|+.+|++|+.+ .+.++...+..|.++
T Consensus 495 lG~vy~Kqek~e~Ae~~fqkA~-~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~l------d~kn~l~~~~~~~il 567 (638)
T KOG1126|consen 495 LGTVYLKQEKLEFAEFHFQKAV-EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHL------DPKNPLCKYHRASIL 567 (638)
T ss_pred hhhheeccchhhHHHHHHHhhh-cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhc------CCCCchhHHHHHHHH
Confidence 9999999999999999999999 899988888889999999999999999999999998 788999999999999
Q ss_pred HhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCCcc
Q 001486 444 YTTTGSADNARDILIDGIKHVPNCKLLLEELIKFTMVHGGRSH 486 (1070)
Q Consensus 444 ~~~~g~~e~Ar~iyekaL~~~P~~~~lw~~y~~~e~~~g~~~~ 486 (1070)
. ..+++++|...+|+.-+..|+...++...++..++.|..+.
T Consensus 568 ~-~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~ 609 (638)
T KOG1126|consen 568 F-SLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDL 609 (638)
T ss_pred H-hhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchH
Confidence 8 99999999999999999999999999999999999887765
No 57
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.53 E-value=1.2e-12 Score=133.16 Aligned_cols=207 Identities=14% Similarity=0.107 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhhhchHHHHHHHHHHH
Q 001486 290 KNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKE 369 (1070)
Q Consensus 290 ~~W~~yi~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~ 369 (1070)
.+.+.++--+...|++..|...+++||..+|.+...|..+|.+|...|..+.|.+.|++|+.+ .|++-++...|+.|+.
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl-~p~~GdVLNNYG~FLC 114 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSL-APNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc-CCCccchhhhhhHHHH
Confidence 344444444555666666666666666666666666666666666666666666666666654 4444455555555555
Q ss_pred HhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhcCC
Q 001486 370 QIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGS 449 (1070)
Q Consensus 370 ~~g~~~eA~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~g~ 449 (1070)
..|++++|..-|++|+ .. +..+..+..|.+.|.|-. +.|+
T Consensus 115 ~qg~~~eA~q~F~~Al-----------------------------------~~----P~Y~~~s~t~eN~G~Cal-~~gq 154 (250)
T COG3063 115 AQGRPEEAMQQFERAL-----------------------------------AD----PAYGEPSDTLENLGLCAL-KAGQ 154 (250)
T ss_pred hCCChHHHHHHHHHHH-----------------------------------hC----CCCCCcchhhhhhHHHHh-hcCC
Confidence 5555555555555554 32 011222334444444443 4455
Q ss_pred HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCCcchhHHHHHHHHHhccCCcccccCChhhHHHHHHHHHHHHHHhCC
Q 001486 450 ADNARDILIDGIKHVPNCKLLLEELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGT 529 (1070)
Q Consensus 450 ~e~Ar~iyekaL~~~P~~~~lw~~y~~~e~~~g~~~~~~~ar~l~ekAl~~~~~~s~~l~~~~~~~l~~~~~~~e~~~G~ 529 (1070)
++.|++.|+++|+++|+.+......++.+...|+... ||..+++-..... -..+.||. .++++..+|+
T Consensus 155 ~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~---Ar~~~~~~~~~~~--------~~A~sL~L-~iriak~~gd 222 (250)
T COG3063 155 FDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAP---ARLYLERYQQRGG--------AQAESLLL-GIRIAKRLGD 222 (250)
T ss_pred chhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchH---HHHHHHHHHhccc--------ccHHHHHH-HHHHHHHhcc
Confidence 5555555555555555544444444444444444433 3344444332111 22344443 3466666677
Q ss_pred HHHHHHHHHHHHHhCCCCcc
Q 001486 530 IHDIRNAWNQHIKLFPHTVR 549 (1070)
Q Consensus 530 ~~~a~~~~~ra~~~~p~~~~ 549 (1070)
...+.+.-.+..+.||.+..
T Consensus 223 ~~~a~~Y~~qL~r~fP~s~e 242 (250)
T COG3063 223 RAAAQRYQAQLQRLFPYSEE 242 (250)
T ss_pred HHHHHHHHHHHHHhCCCcHH
Confidence 66666666666677776544
No 58
>PRK12370 invasion protein regulator; Provisional
Probab=99.53 E-value=3e-12 Score=156.08 Aligned_cols=162 Identities=14% Similarity=-0.003 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhhhchHHHHHHHHHH
Q 001486 289 LKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYK 368 (1070)
Q Consensus 289 ~~~W~~yi~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e 368 (1070)
...|..++..+...|++++|+..|++|+..+|.+...++.++..+...|++++|+..+++++....++.+..+..++.++
T Consensus 372 ~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l 451 (553)
T PRK12370 372 ADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFL 451 (553)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHH
Confidence 33455555555567788888888888888888876665555544555777888888888877653455667777777777
Q ss_pred HHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhcC
Q 001486 369 EQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTG 448 (1070)
Q Consensus 369 ~~~g~~~eA~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~g 448 (1070)
...|++++|+..+.+++ ...+.....+...+.++...| ++|...+++.++........ +.. .+.++. -.|
T Consensus 452 ~~~G~~~eA~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~---~~~---~~~~~~-~~g 521 (553)
T PRK12370 452 SLKGKHELARKLTKEIS-TQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNN---PGL---LPLVLV-AHG 521 (553)
T ss_pred HhCCCHHHHHHHHHHhh-hccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcC---chH---HHHHHH-HHh
Confidence 78888888888887765 445555555666665555555 47777777766653222111 111 344444 566
Q ss_pred CHHHHHHHHHHHH
Q 001486 449 SADNARDILIDGI 461 (1070)
Q Consensus 449 ~~e~Ar~iyekaL 461 (1070)
+.+.|... .++.
T Consensus 522 ~~~~~~~~-~~~~ 533 (553)
T PRK12370 522 EAIAEKMW-NKFK 533 (553)
T ss_pred hhHHHHHH-HHhh
Confidence 66665554 4443
No 59
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.53 E-value=2.2e-12 Score=138.02 Aligned_cols=200 Identities=16% Similarity=0.058 Sum_probs=174.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhhhchHHHHHHHHH
Q 001486 288 QLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARY 367 (1070)
Q Consensus 288 ~~~~W~~yi~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~ 367 (1070)
....|..++..+...|++++++..|++++...|.+..+|..++.++...|++++|+..|++++.. .+..+.++..++.+
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTL-NPNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCHHHHHHHHHH
Confidence 35678888888889999999999999999999999999999999999999999999999999987 56667889999999
Q ss_pred HHHhCCHHHHHHHHHHHhhcc-ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhh
Q 001486 368 KEQIGDTSAARAAFPESYIDS-DSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTT 446 (1070)
Q Consensus 368 e~~~g~~~eA~~~~~~al~~~-~p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~ 446 (1070)
+...|++++|+..|.+++... .+.....|..++.++...|++++|...|+++++. .+....++..+|.++. .
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~la~~~~-~ 181 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI------DPQRPESLLELAELYY-L 181 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CcCChHHHHHHHHHHH-H
Confidence 999999999999999998422 2345667888999999999999999999999998 5677889999999998 9
Q ss_pred cCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCCcchhHHHHHHHHHh
Q 001486 447 TGSADNARDILIDGIKHVPNCKLLLEELIKFTMVHGGRSHISIVDAVISNAL 498 (1070)
Q Consensus 447 ~g~~e~Ar~iyekaL~~~P~~~~lw~~y~~~e~~~g~~~~~~~ar~l~ekAl 498 (1070)
.|++++|..+|+++++..|.+...|...+.+....|+.+.+ +.+.+.+.
T Consensus 182 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a---~~~~~~~~ 230 (234)
T TIGR02521 182 RGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAA---QRYGAQLQ 230 (234)
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHH---HHHHHHHH
Confidence 99999999999999999888888888888888888876653 45544443
No 60
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.52 E-value=1.6e-11 Score=133.73 Aligned_cols=449 Identities=12% Similarity=0.066 Sum_probs=276.5
Q ss_pred cHHHHHHHHHHHH--HHCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcCCC-HHHHHHHHHHH----HhhCCChhH
Q 001486 54 DIEMIGLVYDSFL--AEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYS-VDVWFHYCSLS----MSTFEDPND 126 (1070)
Q Consensus 54 ~~~~a~~vyeraL--~~~P~s~~lW~~ya~~e~~~~~~e~A~~lferAL~~~P~s-~~lW~~y~~~~----~~~~~~~~~ 126 (1070)
...+|...|+-.+ +-||+..-+-.....++++..+|.+|++.|.-||...|.- -+..+..+.-+ +.. |.++.
T Consensus 216 m~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~-gqy~d 294 (840)
T KOG2003|consen 216 MTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQA-GQYDD 294 (840)
T ss_pred HHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEec-ccchh
Confidence 3455666666666 3688888877788888888888999999999999988752 22322222211 122 78999
Q ss_pred HHHHHHHHHHHcCCCCCchHHHHHHHHHHHHcccHHHHHHHHHHHHccCCcCHHHHH------------------HHHHH
Q 001486 127 VRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYY------------------DSFKK 188 (1070)
Q Consensus 127 ar~vferAL~~~p~~~~s~~lW~~yi~fe~~~~~~~~a~~iy~raL~~p~~~~~~~~------------------~~~~~ 188 (1070)
|+..|+.++...|.-.....| ..+-| ..++-++.++.|.+.+.+|..--+..| +.++.
T Consensus 295 ainsfdh~m~~~pn~~a~~nl--~i~~f--~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~ 370 (840)
T KOG2003|consen 295 AINSFDHCMEEAPNFIAALNL--IICAF--AIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKN 370 (840)
T ss_pred hHhhHHHHHHhCccHHhhhhh--hhhhe--ecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHH
Confidence 999999998876642211111 11122 246778899999999877632111100 01111
Q ss_pred HHHHHHHHhhhcchhhHHHHHHHhhcCCccccccchhhhHHHhhhcCcchhHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q 001486 189 LAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQ---KYRFIGEQIYKEASQLDE 265 (1070)
Q Consensus 189 ~~~~~~eal~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~i~~~~~~~~~~~~a~~~~---~~~~~~~~~y~~a~~~~~ 265 (1070)
|.++.+ +-.++.+- ....++.-.+...+..---|++ +.++.+...+.+..+. ....+..+.|+.|.++
T Consensus 371 ~ek~~k----a~aek~i~-ta~kiiapvi~~~fa~g~dwcl--e~lk~s~~~~la~dlei~ka~~~lk~~d~~~aiei-- 441 (840)
T KOG2003|consen 371 MEKENK----ADAEKAII-TAAKIIAPVIAPDFAAGCDWCL--ESLKASQHAELAIDLEINKAGELLKNGDIEGAIEI-- 441 (840)
T ss_pred HHHhhh----hhHHHHHH-HHHHHhccccccchhcccHHHH--HHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHH--
Confidence 111100 00000000 0001111111111110000110 0000000000000000 0001122223333332
Q ss_pred HHHHHHHhhcccCCCCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhCChhHHHHH
Q 001486 266 KINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYA 345 (1070)
Q Consensus 266 ~~~~fE~ai~~~~~~~~~~~p~~~~~W~~yi~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~i 345 (1070)
+..||+.-.+ . ..-...-+..+.|+.-..++..|...-..||..+..++....+-+.....+|++++|.+.
T Consensus 442 -lkv~~~kdnk------~--~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ 512 (840)
T KOG2003|consen 442 -LKVFEKKDNK------T--ASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEF 512 (840)
T ss_pred -HHHHHhccch------h--hHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHH
Confidence 2333332111 0 000111222334443344788888889999999999988888888888889999999999
Q ss_pred HHHHHHHHhhhchHHHHHHHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 001486 346 LDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAE 425 (1070)
Q Consensus 346 l~rAl~~~~~~~p~i~~~~a~~e~~~g~~~eA~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~ 425 (1070)
|+.|+.. ...|....+..+...+..|++++|+.+|-+.- .+.-+...+++..+++++.+.+...|+++|-.+..+
T Consensus 513 ykeal~n-dasc~ealfniglt~e~~~~ldeald~f~klh-~il~nn~evl~qianiye~led~aqaie~~~q~~sl--- 587 (840)
T KOG2003|consen 513 YKEALNN-DASCTEALFNIGLTAEALGNLDEALDCFLKLH-AILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL--- 587 (840)
T ss_pred HHHHHcC-chHHHHHHHHhcccHHHhcCHHHHHHHHHHHH-HHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc---
Confidence 9999975 33455677777777889999999999998864 334467889999999999999999999999999988
Q ss_pred hccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHH--HHHHHHHHHHcCCCcchhHHHHHHHHHhccCCc
Q 001486 426 QRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLL--LEELIKFTMVHGGRSHISIVDAVISNALYSRPD 503 (1070)
Q Consensus 426 ~~~~~~~~~l~i~~A~~~~~~~g~~e~Ar~iyekaL~~~P~~~~l--w~~y~~~e~~~g~~~~~~~ar~l~ekAl~~~~~ 503 (1070)
.|.+|.+...+|.+|- ..|+...|+.++-...+.+|.+.+. |+.-..++... .+.+-..||+|-..-|
T Consensus 588 ---ip~dp~ilskl~dlyd-qegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf-----~ekai~y~ekaaliqp- 657 (840)
T KOG2003|consen 588 ---IPNDPAILSKLADLYD-QEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQF-----SEKAINYFEKAALIQP- 657 (840)
T ss_pred ---CCCCHHHHHHHHHHhh-cccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHH-----HHHHHHHHHHHHhcCc-
Confidence 5899999999999997 9999999999999999999998753 54332222221 2335588999875333
Q ss_pred ccccCChhhHHHHHHHHHH-HHHHhCCHHHHHHHHHHHHHhCCCCcc
Q 001486 504 VLKVFSLEDVEDISSLYLQ-FLDLCGTIHDIRNAWNQHIKLFPHTVR 549 (1070)
Q Consensus 504 ~s~~l~~~~~~~l~~~~~~-~e~~~G~~~~a~~~~~ra~~~~p~~~~ 549 (1070)
. ..-|.+.+. -.++.|++..|..+|+...+.||.+..
T Consensus 658 -------~--~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedld 695 (840)
T KOG2003|consen 658 -------N--QSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLD 695 (840)
T ss_pred -------c--HHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchH
Confidence 1 123555544 447899999999999999999999765
No 61
>PRK12370 invasion protein regulator; Provisional
Probab=99.49 E-value=5.3e-12 Score=153.93 Aligned_cols=248 Identities=10% Similarity=-0.041 Sum_probs=190.4
Q ss_pred HHHHHHHHhhcccCCCCCCCChHHHHHHHHHHHHHHH---------cCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHh
Q 001486 265 EKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEK---------QGDFDWVVKLYERCLIPCADYPEFWMRYVDFMES 335 (1070)
Q Consensus 265 ~~~~~fE~ai~~~~~~~~~~~p~~~~~W~~yi~~~~~---------~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~ 335 (1070)
.++..|+++++ ++|++...|..++.++.. .+++++|...+++|+..+|++..+|..+|.++..
T Consensus 279 ~A~~~~~~Al~--------ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~ 350 (553)
T PRK12370 279 QALKLLTQCVN--------MSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTI 350 (553)
T ss_pred HHHHHHHHHHh--------cCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 45566777764 578888888777765432 2357899999999999999999999999999999
Q ss_pred hCChhHHHHHHHHHHHHHhhhchHHHHHHHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHH
Q 001486 336 KGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDT 415 (1070)
Q Consensus 336 ~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~eA~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~v 415 (1070)
.|++++|+..|++|+++ .|+++.+|+.+|.++...|++++|+..|++++ .++|.....++..+.+....|++++|+..
T Consensus 351 ~g~~~~A~~~~~~Al~l-~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al-~l~P~~~~~~~~~~~~~~~~g~~eeA~~~ 428 (553)
T PRK12370 351 HSEYIVGSLLFKQANLL-SPISADIKYYYGWNLFMAGQLEEALQTINECL-KLDPTRAAAGITKLWITYYHTGIDDAIRL 428 (553)
T ss_pred ccCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-hcCCCChhhHHHHHHHHHhccCHHHHHHH
Confidence 99999999999999998 78888899999999999999999999999999 78887766655555556668999999999
Q ss_pred HHHHHHHHHhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCCcchhHHHHHHH
Q 001486 416 YKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLLLEELIKFTMVHGGRSHISIVDAVIS 495 (1070)
Q Consensus 416 yekal~~~~~~~~~~~~~~l~i~~A~~~~~~~g~~e~Ar~iyekaL~~~P~~~~lw~~y~~~e~~~g~~~~~~~ar~l~e 495 (1070)
|+++++.. .+..+.++..+|.++. ..|++++|+..|++.+...|.....+...+......|+ + +...++
T Consensus 429 ~~~~l~~~-----~p~~~~~~~~la~~l~-~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~---a~~~l~ 497 (553)
T PRK12370 429 GDELRSQH-----LQDNPILLSMQVMFLS-LKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--R---ALPTIR 497 (553)
T ss_pred HHHHHHhc-----cccCHHHHHHHHHHHH-hCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--H---HHHHHH
Confidence 99998862 3667888999999987 89999999999999998899888888777777666664 2 345555
Q ss_pred HHhccCCcccccCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 001486 496 NALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQHIKL 543 (1070)
Q Consensus 496 kAl~~~~~~s~~l~~~~~~~l~~~~~~~e~~~G~~~~a~~~~~ra~~~ 543 (1070)
+.+..... .+.+. .....|+.-.|+.+.+... .++.+.
T Consensus 498 ~ll~~~~~-----~~~~~----~~~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 498 EFLESEQR-----IDNNP----GLLPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred HHHHHhhH-----hhcCc----hHHHHHHHHHhhhHHHHHH-HHhhcc
Confidence 54431110 00001 1134455566776666555 554444
No 62
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=3.4e-11 Score=136.07 Aligned_cols=355 Identities=13% Similarity=0.035 Sum_probs=230.9
Q ss_pred chHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH-HHH-HCCCCHHHHHHHHHHHHHh-CCHHHHHHHHHH
Q 001486 22 GKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDS-FLA-EFPLCYGYWRKYADHKARL-CSIDKVVEVFER 98 (1070)
Q Consensus 22 ~~~~le~~l~~nP~s~~~W~~li~~~~~~~~~~~~~a~~vyer-aL~-~~P~s~~lW~~ya~~e~~~-~~~e~A~~lfer 98 (1070)
+...|.++|..+++.+++...++....-+ ..+-..+++. =++ ..-.+++.-..+.++.... -+-+.....=+.
T Consensus 160 ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt----~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~ 235 (611)
T KOG1173|consen 160 ARDKYKEALLADAKCFEAFEKLVSAHMLT----AQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDE 235 (611)
T ss_pred HHHHHHHHHhcchhhHHHHHHHHHHHhcc----hhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchh
Confidence 45589999999999999999988754422 1111222221 000 2222333333333322111 011111111113
Q ss_pred HHHhcCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHcccHHHHHHHHHHHHc-cCCc
Q 001486 99 AVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLR-FPSK 177 (1070)
Q Consensus 99 AL~~~P~s~~lW~~y~~~~~~~~~~~~~ar~vferAL~~~p~~~~s~~lW~~yi~fe~~~~~~~~a~~iy~raL~-~p~~ 177 (1070)
.+...-++++|-...++.+... +++.+..++++..+...|.+.. +....|--....|+..++--+=.+.+. .|..
T Consensus 236 sl~~l~~~~dll~~~ad~~y~~-c~f~~c~kit~~lle~dpfh~~---~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~ 311 (611)
T KOG1173|consen 236 SLIGLAENLDLLAEKADRLYYG-CRFKECLKITEELLEKDPFHLP---CLPLHIACLYELGKSNKLFLLSHKLVDLYPSK 311 (611)
T ss_pred hhhhhhhcHHHHHHHHHHHHHc-ChHHHHHHHhHHHHhhCCCCcc---hHHHHHHHHHHhcccchHHHHHHHHHHhCCCC
Confidence 3333457888999989888888 8999999999999999888653 334444444444544444333333333 2322
Q ss_pred CHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHhhcCCccccccchhhhHHHhhhcCcchhHHHHHHHHHHHHHHHHHH
Q 001486 178 KLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIY 257 (1070)
Q Consensus 178 ~~~~~~~~~~~~~~~~~eal~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~i~~~~~~~~~~~~a~~~~~~~~~~~~~y 257 (1070)
.+ .+|. +. .+..++ +.+
T Consensus 312 a~-sW~a------------Vg---------~YYl~i-----------------------------------------~k~ 328 (611)
T KOG1173|consen 312 AL-SWFA------------VG---------CYYLMI-----------------------------------------GKY 328 (611)
T ss_pred Cc-chhh------------HH---------HHHHHh-----------------------------------------cCc
Confidence 10 0000 00 000000 011
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhC
Q 001486 258 KEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKG 337 (1070)
Q Consensus 258 ~~a~~~~~~~~~fE~ai~~~~~~~~~~~p~~~~~W~~yi~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g 337 (1070)
.+| |.-|-++. .+++..-..|..|+--+.-.|.-+.|+.+|.+|-+..+....-.+-+|.-+-..+
T Consensus 329 seA------Rry~SKat--------~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~ 394 (611)
T KOG1173|consen 329 SEA------RRYFSKAT--------TLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTN 394 (611)
T ss_pred HHH------HHHHHHHh--------hcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhc
Confidence 222 22222222 2455556789999988777788899999999999887776555555666677788
Q ss_pred ChhHHHHHHHHHHHHHhhhchHHHHHHHHHHHHhCCHHHHHHHHHHHhhcc---Ch---hhHHHHHHHHHHHHHcCCHHH
Q 001486 338 GREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDS---DS---RFIEKVTFKANMERRLGNFVA 411 (1070)
Q Consensus 338 ~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~eA~~~~~~al~~~---~p---~~~~~w~~~a~le~~~g~~~~ 411 (1070)
.++.|...|..|+.+ .|.+|-+.-..|.+....+.+.+|..+|..++..+ .+ .-..+|.++|.++++++.+++
T Consensus 395 n~kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~e 473 (611)
T KOG1173|consen 395 NLKLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEE 473 (611)
T ss_pred cHHHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHH
Confidence 899999999999988 78888777777777777889999999999887322 11 123458889999999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHH
Q 001486 412 ACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKL 469 (1070)
Q Consensus 412 A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~g~~e~Ar~iyekaL~~~P~~~~ 469 (1070)
|+..|++||.+ .+.++.++-..|.++. ..|+++.|.+.|.++|.+.|++..
T Consensus 474 AI~~~q~aL~l------~~k~~~~~asig~iy~-llgnld~Aid~fhKaL~l~p~n~~ 524 (611)
T KOG1173|consen 474 AIDYYQKALLL------SPKDASTHASIGYIYH-LLGNLDKAIDHFHKALALKPDNIF 524 (611)
T ss_pred HHHHHHHHHHc------CCCchhHHHHHHHHHH-HhcChHHHHHHHHHHHhcCCccHH
Confidence 99999999998 6888999999999988 999999999999999999998753
No 63
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.48 E-value=1.2e-10 Score=136.17 Aligned_cols=144 Identities=13% Similarity=0.075 Sum_probs=98.2
Q ss_pred HHHHHHhCCCCHHHHHHHHHH----------HHhcCCCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHHHH
Q 001486 26 LEEFIAEGSLDFDEWTSLLSE----------IENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEV 95 (1070)
Q Consensus 26 le~~l~~nP~s~~~W~~li~~----------~~~~~~~~~~~a~~vyeraL~~~P~s~~lW~~ya~~e~~~~~~e~A~~l 95 (1070)
+-..+-.-|..+..|...=+. +.....|++++|++...++-+..+.-.-.+...+......|+++.|...
T Consensus 61 ~~~~~~~~p~~~~~~~~~rr~~~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~ 140 (398)
T PRK10747 61 LLRRIFRTGARTRGWFVGRKRRRARKQTEQALLKLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQH 140 (398)
T ss_pred HHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHH
Confidence 344455667777777553221 1111237888888777766654333233444445555788899999999
Q ss_pred HHHHHHhcCCCH-HHHHHHHHHHHhhCCChhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHcccHHHHHHHHHHHHc
Q 001486 96 FERAVQSATYSV-DVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLR 173 (1070)
Q Consensus 96 ferAL~~~P~s~-~lW~~y~~~~~~~~~~~~~ar~vferAL~~~p~~~~s~~lW~~yi~fe~~~~~~~~a~~iy~raL~ 173 (1070)
|++|.+..|.+. -..+..+++.+.. |+++.|..+++++++..|.+ ..+...........|+++.+.+++.+..+
T Consensus 141 l~~A~~~~~~~~~~~~l~~a~l~l~~-g~~~~Al~~l~~~~~~~P~~---~~al~ll~~~~~~~gdw~~a~~~l~~l~k 215 (398)
T PRK10747 141 LERAAELADNDQLPVEITRVRIQLAR-NENHAARHGVDKLLEVAPRH---PEVLRLAEQAYIRTGAWSSLLDILPSMAK 215 (398)
T ss_pred HHHHHhcCCcchHHHHHHHHHHHHHC-CCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 999999888764 3334447777777 99999999999998887763 45666666777777888888888777765
No 64
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.48 E-value=4.6e-12 Score=129.00 Aligned_cols=182 Identities=14% Similarity=0.087 Sum_probs=148.0
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhhhc
Q 001486 278 YFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRL 357 (1070)
Q Consensus 278 ~~~~~~~~p~~~~~W~~yi~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~ 357 (1070)
+......+|+....|.-++.++.+.|..+.|.+.|++||...|++.++..+|+-|+...|++++|..-|++|+.. |..
T Consensus 58 lekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~--P~Y 135 (250)
T COG3063 58 LEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALAD--PAY 135 (250)
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhC--CCC
Confidence 344556899999999999999999999999999999999999999999999999999999999999999999974 332
Q ss_pred ---hHHHHHHHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHH
Q 001486 358 ---PVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPL 434 (1070)
Q Consensus 358 ---p~i~~~~a~~e~~~g~~~eA~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~ 434 (1070)
+..|...+..-.+.|.++.|++.|++++ +++|+........+..+...|++..|+..|++-.... ...-..
T Consensus 136 ~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL-~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~-----~~~A~s 209 (250)
T COG3063 136 GEPSDTLENLGLCALKAGQFDQAEEYLKRAL-ELDPQFPPALLELARLHYKAGDYAPARLYLERYQQRG-----GAQAES 209 (250)
T ss_pred CCcchhhhhhHHHHhhcCCchhHHHHHHHHH-HhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcc-----cccHHH
Confidence 3567777777788888888888888888 7778777788888888888888888888888776662 223334
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHH
Q 001486 435 LYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKL 469 (1070)
Q Consensus 435 l~i~~A~~~~~~~g~~e~Ar~iyekaL~~~P~~~~ 469 (1070)
+|+.+ ++.. ..||.+.|-+.=.+..+.+|.+.+
T Consensus 210 L~L~i-riak-~~gd~~~a~~Y~~qL~r~fP~s~e 242 (250)
T COG3063 210 LLLGI-RIAK-RLGDRAAAQRYQAQLQRLFPYSEE 242 (250)
T ss_pred HHHHH-HHHH-HhccHHHHHHHHHHHHHhCCCcHH
Confidence 55443 5554 788888877776677777888776
No 65
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=1.3e-10 Score=131.55 Aligned_cols=213 Identities=10% Similarity=0.065 Sum_probs=175.6
Q ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhhhchHHHHH
Q 001486 284 LDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLF 363 (1070)
Q Consensus 284 ~~p~~~~~W~~yi~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~ 363 (1070)
..|+..--|+..+.++...|++.+|+..|-+|...+|.+...|+.||..+.-.|.-|.|...|.+|.+. .+.+..-.+.
T Consensus 307 ~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LY 385 (611)
T KOG1173|consen 307 LYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLY 385 (611)
T ss_pred hCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHH
Confidence 356667789999999999999999999999999999999999999999999999999999999999997 4433222333
Q ss_pred HHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcc-CCCcHHHHHHHHHH
Q 001486 364 NARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRK-FHTLPLLYVQFSRL 442 (1070)
Q Consensus 364 ~a~~e~~~g~~~eA~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~-~~~~~~l~i~~A~~ 442 (1070)
.|.=+.+.++++-|...|..|+ .+.|..+-+....+-+....+.+.+|...|..++...+.... .+....++.++|.+
T Consensus 386 lgmey~~t~n~kLAe~Ff~~A~-ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~ 464 (611)
T KOG1173|consen 386 LGMEYMRTNNLKLAEKFFKQAL-AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHA 464 (611)
T ss_pred HHHHHHHhccHHHHHHHHHHHH-hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHH
Confidence 3444567899999999999999 777877777777777766778999999999999966543221 22244678999999
Q ss_pred HHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCCcchhHHHHHHHHHhccCC
Q 001486 443 TYTTTGSADNARDILIDGIKHVPNCKLLLEELIKFTMVHGGRSHISIVDAVISNALYSRP 502 (1070)
Q Consensus 443 ~~~~~g~~e~Ar~iyekaL~~~P~~~~lw~~y~~~e~~~g~~~~~~~ar~l~ekAl~~~~ 502 (1070)
+. ..+.+++|+..|++||..+|.+..++-..+-+....|+.+. |-+.|-+||...|
T Consensus 465 ~R-kl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~---Aid~fhKaL~l~p 520 (611)
T KOG1173|consen 465 YR-KLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDK---AIDHFHKALALKP 520 (611)
T ss_pred HH-HHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHH---HHHHHHHHHhcCC
Confidence 97 99999999999999999999999988877777777788776 4589999996544
No 66
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.46 E-value=6.8e-11 Score=139.00 Aligned_cols=280 Identities=9% Similarity=-0.098 Sum_probs=191.0
Q ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 001486 23 KQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCY-GYWRKYADHKARLCSIDKVVEVFERAVQ 101 (1070)
Q Consensus 23 ~~~le~~l~~nP~s~~~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P~s~-~lW~~ya~~e~~~~~~e~A~~lferAL~ 101 (1070)
.+.+.++....|...-.++..++.+... |+.+++...|+++++.+|++. .+...++++....++++.|...+++.++
T Consensus 104 ~~~l~~~~~~~~~~~~~~llaA~aa~~~--g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~ 181 (409)
T TIGR00540 104 EKLIAKNADHAAEPVLNLIKAAEAAQQR--GDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLE 181 (409)
T ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3467777888888888888888888877 999999999999999999985 6788889999999999999999999999
Q ss_pred hcCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHcCCCCCch-----HHHHHHHHHHHHcccHHHHHHHHHHHHc-cC
Q 001486 102 SATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCH-----TMWDKYIEFEISQQRWSSLAQIFVQTLR-FP 175 (1070)
Q Consensus 102 ~~P~s~~lW~~y~~~~~~~~~~~~~ar~vferAL~~~p~~~~s~-----~lW~~yi~fe~~~~~~~~a~~iy~raL~-~p 175 (1070)
..|.+..++..++..++.. |+++.+.+++++.++....+.... ..|...+.-... +.....+.++.. +|
T Consensus 182 ~~P~~~~~l~ll~~~~~~~-~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~----~~~~~~L~~~~~~~p 256 (409)
T TIGR00540 182 MAPRHKEVLKLAEEAYIRS-GAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMA----DEGIDGLLNWWKNQP 256 (409)
T ss_pred hCCCCHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH----hcCHHHHHHHHHHCC
Confidence 9999999999999999999 999999999999998733221100 111111110000 000111111111 11
Q ss_pred CcCHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHhhcCCccccccchhhhHHHhhhcCcchhHHHHHHHHHHHHHHHH
Q 001486 176 SKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQ 255 (1070)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~eal~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~i~~~~~~~~~~~~a~~~~~~~~~~~~ 255 (1070)
.. . .++.++... +. .
T Consensus 257 ~~---------------~---------------------------~~~~~l~~~-----------------~a------~ 271 (409)
T TIGR00540 257 RH---------------R---------------------------RHNIALKIA-----------------LA------E 271 (409)
T ss_pred HH---------------H---------------------------hCCHHHHHH-----------------HH------H
Confidence 00 0 000000000 00 0
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCCCCCCCChHHHH----HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCH--HHHHHH
Q 001486 256 IYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLK----NWHDYLSFAEKQGDFDWVVKLYERCLIPCADYP--EFWMRY 329 (1070)
Q Consensus 256 ~y~~a~~~~~~~~~fE~ai~~~~~~~~~~~p~~~~----~W~~yi~~~~~~g~~~~a~~~yerAL~~~p~~~--~lW~~y 329 (1070)
.+....+.......++++++ ..|++.. .+..++.+ ..++.+.+...++++++..|+++ .+...|
T Consensus 272 ~l~~~g~~~~A~~~l~~~l~--------~~pd~~~~~~~~l~~~~~l--~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sL 341 (409)
T TIGR00540 272 HLIDCDDHDSAQEIIFDGLK--------KLGDDRAISLPLCLPIPRL--KPEDNEKLEKLIEKQAKNVDDKPKCCINRAL 341 (409)
T ss_pred HHHHCCChHHHHHHHHHHHh--------hCCCcccchhHHHHHhhhc--CCCChHHHHHHHHHHHHhCCCChhHHHHHHH
Confidence 01111112223334444554 2333332 23333332 24678899999999999999999 889999
Q ss_pred HHHHHhhCChhHHHHHHHH--HHHHHhhhchHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Q 001486 330 VDFMESKGGREIASYALDR--ATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYI 386 (1070)
Q Consensus 330 a~~l~~~g~~e~A~~il~r--Al~~~~~~~p~i~~~~a~~e~~~g~~~eA~~~~~~al~ 386 (1070)
|.++.+.|++++|++.|++ ++.. .| ++.++..++.+++..|+.++|+++|++++.
T Consensus 342 g~l~~~~~~~~~A~~~le~a~a~~~-~p-~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 342 GQLLMKHGEFIEAADAFKNVAACKE-QL-DANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHHHcccHHHHHHHHHHhHHhhc-CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999995 5544 23 334566889999999999999999999873
No 67
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.44 E-value=1.9e-11 Score=130.68 Aligned_cols=205 Identities=17% Similarity=0.149 Sum_probs=173.9
Q ss_pred CHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhhhchHHHHHHHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHH
Q 001486 322 YPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKAN 401 (1070)
Q Consensus 322 ~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~eA~~~~~~al~~~~p~~~~~w~~~a~ 401 (1070)
...+|+.++..+...|++++|+..|++++.. .|....++...+.++...|++++|+..|.+++ ...+....+|..++.
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~-~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEH-DPDDYLAYLALALYYQQLGELEKAEDSFRRAL-TLNPNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hhCCCCHHHHHHHHH
Confidence 3678899999999999999999999999987 56667788889999999999999999999999 667777889999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHc
Q 001486 402 MERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLLLEELIKFTMVH 481 (1070)
Q Consensus 402 le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~g~~e~Ar~iyekaL~~~P~~~~lw~~y~~~e~~~ 481 (1070)
++...|++++|+..|+++++.. ..+....++..+|.++. ..|++++|...|+++++..|++...|..++.+....
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 182 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDP----LYPQPARSLENAGLCAL-KAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLR 182 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhcc----ccccchHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHc
Confidence 9999999999999999999852 12455678888999988 999999999999999999999999999999998888
Q ss_pred CCCcchhHHHHHHHHHhccCCcccccCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Q 001486 482 GGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQHIKLFP 545 (1070)
Q Consensus 482 g~~~~~~~ar~l~ekAl~~~~~~s~~l~~~~~~~l~~~~~~~e~~~G~~~~a~~~~~ra~~~~p 545 (1070)
|+.++ +..+|++++... +.. ...+...+.+....|+.+.+..+.+++.+.+|
T Consensus 183 ~~~~~---A~~~~~~~~~~~--------~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 183 GQYKD---ARAYLERYQQTY--------NQT-AESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred CCHHH---HHHHHHHHHHhC--------CCC-HHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 87765 568899988632 122 34445677888889999999998888776654
No 68
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.44 E-value=1.9e-09 Score=126.21 Aligned_cols=402 Identities=11% Similarity=0.034 Sum_probs=253.0
Q ss_pred HHCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHc--CCCCCc
Q 001486 67 AEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFV--GKDYLC 144 (1070)
Q Consensus 67 ~~~P~s~~lW~~ya~~e~~~~~~e~A~~lferAL~~~P~s~~lW~~y~~~~~~~~~~~~~ar~vferAL~~~--p~~~~s 144 (1070)
..+-++..+|-.+.-.....|.|+.+.+.||+++..+-...+.|..++--+... |.-.+|..+++..+..- |.+.
T Consensus 317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saa-g~~s~Av~ll~~~~~~~~~ps~~-- 393 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAA-GSDSKAVNLLRESLKKSEQPSDI-- 393 (799)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHh-ccchHHHHHHHhhcccccCCCcc--
Confidence 445566667776666666667777777777777777777777777777666666 66666777777766654 3221
Q ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHccCCcCHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHhhcCCccccccch
Q 001486 145 HTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDD 224 (1070)
Q Consensus 145 ~~lW~~yi~fe~~~~~~~~a~~iy~raL~~p~~~~~~~~~~~~~~~~~~~eal~~~~~~~~~~~~~~~~~~~l~~~~~~~ 224 (1070)
..+-..+.-..++.+.++.+...-.|++..-.. -.+.+. . .-.....+ ++..
T Consensus 394 s~~Lmasklc~e~l~~~eegldYA~kai~~~~~-----------~~~~l~----~-----~~~l~lGi-------~y~~- 445 (799)
T KOG4162|consen 394 SVLLMASKLCIERLKLVEEGLDYAQKAISLLGG-----------QRSHLK----P-----RGYLFLGI-------AYGF- 445 (799)
T ss_pred hHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhh-----------hhhhhh----h-----hHHHHHHH-------HHHh-
Confidence 112122222222333333333333333321000 000000 0 00000000 0000
Q ss_pred hhhHHHhhhcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCChHHHHHHHHHHHHHHHcCC
Q 001486 225 ETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGD 304 (1070)
Q Consensus 225 e~~~~i~~~~~~~~~~~~a~~~~~~~~~~~~~y~~a~~~~~~~~~fE~ai~~~~~~~~~~~p~~~~~W~~yi~~~~~~g~ 304 (1070)
....+. ....+.. -.-+.+..+|+++. .+|++..+-+.++-.+-..++
T Consensus 446 --------~A~~a~----------~~seR~~------~h~kslqale~av~--------~d~~dp~~if~lalq~A~~R~ 493 (799)
T KOG4162|consen 446 --------QARQAN----------LKSERDA------LHKKSLQALEEAVQ--------FDPTDPLVIFYLALQYAEQRQ 493 (799)
T ss_pred --------HhhcCC----------ChHHHHH------HHHHHHHHHHHHHh--------cCCCCchHHHHHHHHHHHHHh
Confidence 000000 0000111 11234456676764 344555566666666667788
Q ss_pred HHHHHHHHHHHhcc-CCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhhhchHHHHHHHHHHHHhCCHH--------
Q 001486 305 FDWVVKLYERCLIP-CADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTS-------- 375 (1070)
Q Consensus 305 ~~~a~~~yerAL~~-~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~-------- 375 (1070)
.+.|....+++|.. ...+...|..+|.++.-.+++.+|..|.+-|+.-+..+ -.+-..-+.++...++.+
T Consensus 494 l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N-~~l~~~~~~i~~~~~~~e~~l~t~~~ 572 (799)
T KOG4162|consen 494 LTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDN-HVLMDGKIHIELTFNDREEALDTCIH 572 (799)
T ss_pred HHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhh-hhhchhhhhhhhhcccHHHHHHHHHH
Confidence 89999999999988 55678889999999999999999999999888863321 100000011111111111
Q ss_pred -----------------------------------HHHHHHHHHhh-------ccC-----h-------------hhHHH
Q 001486 376 -----------------------------------AARAAFPESYI-------DSD-----S-------------RFIEK 395 (1070)
Q Consensus 376 -----------------------------------eA~~~~~~al~-------~~~-----p-------------~~~~~ 395 (1070)
+|.+.+.++.. ... | ....+
T Consensus 573 ~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~l 652 (799)
T KOG4162|consen 573 KLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKL 652 (799)
T ss_pred HHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHH
Confidence 22222222211 000 1 12467
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 001486 396 VTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLLLEELI 475 (1070)
Q Consensus 396 w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~g~~e~Ar~iyekaL~~~P~~~~lw~~y~ 475 (1070)
|...+++..+.++.++|+.++.+|-+. .+..+.+|...|.++. ..|..++|...|..|+..+|+.+......+
T Consensus 653 wllaa~~~~~~~~~~~a~~CL~Ea~~~------~~l~~~~~~~~G~~~~-~~~~~~EA~~af~~Al~ldP~hv~s~~Ala 725 (799)
T KOG4162|consen 653 WLLAADLFLLSGNDDEARSCLLEASKI------DPLSASVYYLRGLLLE-VKGQLEEAKEAFLVALALDPDHVPSMTALA 725 (799)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhc------chhhHHHHHHhhHHHH-HHHhhHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence 889999999999999999999999988 6888999999999988 999999999999999999999999999999
Q ss_pred HHHHHcCCCcchhHHHHHHHHHhccCCcccccCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcc
Q 001486 476 KFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQHIKLFPHTVR 549 (1070)
Q Consensus 476 ~~e~~~g~~~~~~~ar~l~ekAl~~~~~~s~~l~~~~~~~l~~~~~~~e~~~G~~~~a~~~~~ra~~~~p~~~~ 549 (1070)
++..+.|+... ...|.++..|+...| ...+.|.......+..|+.+.|-.+|.-++++-+..+.
T Consensus 726 ~~lle~G~~~l-a~~~~~L~dalr~dp---------~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 726 ELLLELGSPRL-AEKRSLLSDALRLDP---------LNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHHhCCcch-HHHHHHHHHHHhhCC---------CCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 99999996654 446779999996443 24578999999999999999999999999999877654
No 69
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.41 E-value=9.6e-10 Score=129.30 Aligned_cols=405 Identities=11% Similarity=0.094 Sum_probs=253.6
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhC--CChhHHHHHHH
Q 001486 55 IEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTF--EDPNDVRRLFK 132 (1070)
Q Consensus 55 ~~~a~~vyeraL~~~P~s~~lW~~ya~~e~~~~~~e~A~~lferAL~~~P~s~~lW~~y~~~~~~~~--~~~~~ar~vfe 132 (1070)
.+.-+.-++.-+.+++.++.....|+.+..+.|++++.+..=..+....|.++.+|+.|+.=+.... ++...+...|+
T Consensus 95 ~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~e 174 (881)
T KOG0128|consen 95 GNQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFE 174 (881)
T ss_pred chhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHH
Confidence 3334456666677788888888888888899999999999989999999999999999998665542 56777888888
Q ss_pred HHHHHcCCCCCchHHHHHHHHHHHHc-------ccHHHHHHHHHHHHcc---CCcCHHHHHHHHHHHHHHHHHHhhhcch
Q 001486 133 RALSFVGKDYLCHTMWDKYIEFEISQ-------QRWSSLAQIFVQTLRF---PSKKLHHYYDSFKKLAGAWKEELECESD 202 (1070)
Q Consensus 133 rAL~~~p~~~~s~~lW~~yi~fe~~~-------~~~~~a~~iy~raL~~---p~~~~~~~~~~~~~~~~~~~eal~~~~~ 202 (1070)
+||. ++.+..||..|+.|.... +.++..|.+|.|+|.. -...-..+|..|.++...+-....
T Consensus 175 kal~----dy~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~---- 246 (881)
T KOG0128|consen 175 KALG----DYNSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVE---- 246 (881)
T ss_pred HHhc----ccccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHH----
Confidence 8884 455789999999998754 4578899999999862 122344556666665544311100
Q ss_pred hhHHHHHHHhhcCCccccccchhhhHHHhhhcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCC
Q 001486 203 SAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVK 282 (1070)
Q Consensus 203 ~~~~~~~~~~~~~~l~~~~~~~e~~~~i~~~~~~~~~~~~a~~~~~~~~~~~~~y~~a~~~~~~~~~fE~ai~~~~~~~~ 282 (1070)
.+.+........ . . + .+.+..-+.|...-+..+...
T Consensus 247 --~~qv~a~~~~el-~---------~---------~----------------------~D~~~~~~~~~~~sk~h~~~~- 282 (881)
T KOG0128|consen 247 --QRQVIALFVREL-K---------Q---------P----------------------LDEDTRGWDLSEQSKAHVYDV- 282 (881)
T ss_pred --HHHHHHHHHHHH-h---------c---------c----------------------chhhhhHHHHHHHHhcchHHH-
Confidence 000000000000 0 0 0 000000001100000000000
Q ss_pred CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhhhchHHHH
Q 001486 283 PLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHL 362 (1070)
Q Consensus 283 ~~~p~~~~~W~~yi~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~ 362 (1070)
.-.++ ..........+..|++.+...+.....|..|.+|.-..|..-....+++|++.- ....+..|+
T Consensus 283 --------~~~~~---~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E-~~~~~~~wi 350 (881)
T KOG0128|consen 283 --------ETKKL---DDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAE-MVLDRALWI 350 (881)
T ss_pred --------HhccH---HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHh-ccccHHHHh
Confidence 00000 001112344566778888888888899999999999999988888899999875 444578999
Q ss_pred HHHHHHHH-hCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHH
Q 001486 363 FNARYKEQ-IGDTSAARAAFPESYIDSDSRFIEKVTFKANMERR-LGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFS 440 (1070)
Q Consensus 363 ~~a~~e~~-~g~~~eA~~~~~~al~~~~p~~~~~w~~~a~le~~-~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A 440 (1070)
.|+.+... ++-...+..++-+++ ..+|.+..+|-.+.....| ..........+++++... ..++..+.
T Consensus 351 ~y~~~~d~eLkv~~~~~~~~~ra~-R~cp~tgdL~~rallAleR~re~~~vI~~~l~~~ls~~---------~~l~~~~~ 420 (881)
T KOG0128|consen 351 GYGVYLDTELKVPQRGVSVHPRAV-RSCPWTGDLWKRALLALERNREEITVIVQNLEKDLSMT---------VELHNDYL 420 (881)
T ss_pred hhhhhcccccccccccccccchhh-cCCchHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHH---------HHHHHHHH
Confidence 98877533 444456677788887 5678888888776543333 345566667777777652 11333222
Q ss_pred HHHHhhc------CCHHHHHHHHHHHHhhC----C----CcHHHHHHHHHHHHHcCCCcchhHHHHHHHHHhccCCcccc
Q 001486 441 RLTYTTT------GSADNARDILIDGIKHV----P----NCKLLLEELIKFTMVHGGRSHISIVDAVISNALYSRPDVLK 506 (1070)
Q Consensus 441 ~~~~~~~------g~~e~Ar~iyekaL~~~----P----~~~~lw~~y~~~e~~~g~~~~~~~ar~l~ekAl~~~~~~s~ 506 (1070)
.+.. ++ .+++.-|+.|..|.... . ....+.-.|+.+|...+.. ...+|.+..-.+...
T Consensus 421 ~~rr-~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~n--md~~R~iWn~imty~----- 492 (881)
T KOG0128|consen 421 AYRR-RCTNIIDSQDYSSLRAAFNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKN--MDKAREIWNFIMTYG----- 492 (881)
T ss_pred HHHH-hhcccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhc--hhhhhHhhhccccCC-----
Confidence 2221 33 34566677777776632 1 1345677888888876532 333567766665421
Q ss_pred cCChhhHHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Q 001486 507 VFSLEDVED-ISSLYLQFLDLCGTIHDIRNAWNQHIKLFP 545 (1070)
Q Consensus 507 ~l~~~~~~~-l~~~~~~~e~~~G~~~~a~~~~~ra~~~~p 545 (1070)
.-... .|..|+++|..+|+...++++++++.--.-
T Consensus 493 ----~~~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~~~ 528 (881)
T KOG0128|consen 493 ----GGSIAGKWLEAINLEREYGDGPSARKVLRKAYSQVV 528 (881)
T ss_pred ----cchHHHHHHHHHhHHHHhCCchhHHHHHHHHHhcCc
Confidence 11233 899999999999999999998877766553
No 70
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=1.2e-09 Score=123.56 Aligned_cols=426 Identities=11% Similarity=0.068 Sum_probs=243.1
Q ss_pred chHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 001486 22 GKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQ 101 (1070)
Q Consensus 22 ~~~~le~~l~~nP~s~~~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P~s~~lW~~ya~~e~~~~~~e~A~~lferAL~ 101 (1070)
+...|-++|..+|.|--++-.....+-+. +++++|..--.+.+++.|...+-|...+.-..-+|+|++|+..|.++|+
T Consensus 21 ai~~~t~ai~l~p~nhvlySnrsaa~a~~--~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~ 98 (539)
T KOG0548|consen 21 AIRLFTEAIMLSPTNHVLYSNRSAAYASL--GSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILAYSEGLE 98 (539)
T ss_pred HHHHHHHHHccCCCccchhcchHHHHHHH--hhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHHHHHHhh
Confidence 34588899999998777776666666666 8888888888899999999999999999988899999999999999999
Q ss_pred hcCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHcccH--HHHHHHHHHHHccCCcCH
Q 001486 102 SATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRW--SSLAQIFVQTLRFPSKKL 179 (1070)
Q Consensus 102 ~~P~s~~lW~~y~~~~~~~~~~~~~ar~vferAL~~~p~~~~s~~lW~~yi~fe~~~~~~--~~a~~iy~raL~~p~~~~ 179 (1070)
..|.+.-|..-+....... . +. +.-+....+|...........-. ...+++....-+.|. .+
T Consensus 99 ~d~~n~~L~~gl~~a~~~~---~--~~----------~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~-~l 162 (539)
T KOG0548|consen 99 KDPSNKQLKTGLAQAYLED---Y--AA----------DQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPT-SL 162 (539)
T ss_pred cCCchHHHHHhHHHhhhHH---H--Hh----------hhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcH-hh
Confidence 9998888877766654111 0 00 22233445665555433322110 112222111112221 11
Q ss_pred HHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHhhcCCcc----ccccch--hhhHHHhhhcCcchhHHHHHHHHHHHHHH
Q 001486 180 HHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVP----AYYKDD--ETSSVIKDLLDPSVDLVRSKAIQKYRFIG 253 (1070)
Q Consensus 180 ~~~~~~~~~~~~~~~eal~~~~~~~~~~~~~~~~~~~l~----~~~~~~--e~~~~i~~~~~~~~~~~~a~~~~~~~~~~ 253 (1070)
..+.. ...+.......... ... .....+... ...... +....+.+..+.....+.++.... +.
T Consensus 163 ~~~l~-d~r~m~a~~~l~~~------~~~-~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~---lg 231 (539)
T KOG0548|consen 163 KLYLN-DPRLMKADGQLKGV------DEL-LFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKE---LG 231 (539)
T ss_pred hcccc-cHHHHHHHHHHhcC------ccc-cccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHH---HH
Confidence 11111 11111111000000 000 000000000 000000 000000000000000000000000 00
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCCCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHH-----
Q 001486 254 EQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMR----- 328 (1070)
Q Consensus 254 ~~~y~~a~~~~~~~~~fE~ai~~~~~~~~~~~p~~~~~W~~yi~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~----- 328 (1070)
...|. .++....+..|..++. ++ .........+..+...|.+.+++.+.+.|+........-+..
T Consensus 232 naayk-kk~f~~a~q~y~~a~e--------l~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~ 301 (539)
T KOG0548|consen 232 NAAYK-KKDFETAIQHYAKALE--------LA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKAL 301 (539)
T ss_pred HHHHH-hhhHHHHHHHHHHHHh--------Hh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHH
Confidence 01111 1111122223333332 22 333444555555555666666666666666543322211111
Q ss_pred --HHHHHHhhCChhHHHHHHHHHHHHHhh-h---------------------chH---HHHHHHHHHHHhCCHHHHHHHH
Q 001486 329 --YVDFMESKGGREIASYALDRATQIFLK-R---------------------LPV---IHLFNARYKEQIGDTSAARAAF 381 (1070)
Q Consensus 329 --ya~~l~~~g~~e~A~~il~rAl~~~~~-~---------------------~p~---i~~~~a~~e~~~g~~~eA~~~~ 381 (1070)
.+..+.+.++++.|+..|.+++..+.. + .|. -...-+.-..+.|+|.+|...|
T Consensus 302 ~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~Y 381 (539)
T KOG0548|consen 302 ARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHY 381 (539)
T ss_pred HHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 222334445567777777777764221 0 010 0011122245688999999999
Q ss_pred HHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 001486 382 PESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGI 461 (1070)
Q Consensus 382 ~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~g~~e~Ar~iyekaL 461 (1070)
.++| ..+|+...+|.+++-++.++|.+..|.+-.++++++ .|...+.|+.-|.++. ...++++|.+.|.+|+
T Consensus 382 teAI-kr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL------~p~~~kgy~RKg~al~-~mk~ydkAleay~eal 453 (539)
T KOG0548|consen 382 TEAI-KRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIEL------DPNFIKAYLRKGAALR-AMKEYDKALEAYQEAL 453 (539)
T ss_pred HHHH-hcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc------CchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 9999 678999999999999999999999999999999999 7899999999999998 9999999999999999
Q ss_pred hhCCCcHHHHHHHHHHHHH-cCCCcchhHHHHHHHHHh
Q 001486 462 KHVPNCKLLLEELIKFTMV-HGGRSHISIVDAVISNAL 498 (1070)
Q Consensus 462 ~~~P~~~~lw~~y~~~e~~-~g~~~~~~~ar~l~ekAl 498 (1070)
+.+|++..+-..|.+...- +++... ..+.+++.
T Consensus 454 e~dp~~~e~~~~~~rc~~a~~~~~~~----ee~~~r~~ 487 (539)
T KOG0548|consen 454 ELDPSNAEAIDGYRRCVEAQRGDETP----EETKRRAM 487 (539)
T ss_pred hcCchhHHHHHHHHHHHHHhhcCCCH----HHHHHhhc
Confidence 9999999988888777664 343332 25666655
No 71
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.40 E-value=7.6e-11 Score=132.24 Aligned_cols=199 Identities=12% Similarity=0.025 Sum_probs=153.7
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhhhchHHHHHHHH
Q 001486 287 IQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNAR 366 (1070)
Q Consensus 287 ~~~~~W~~yi~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~ 366 (1070)
.....|..++..+...|+.+.|+..|++|+...|++..+|..+|.++...|++++|+..|++|+++ .|+++.+|+..|.
T Consensus 62 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l-~P~~~~a~~~lg~ 140 (296)
T PRK11189 62 ERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL-DPTYNYAYLNRGI 140 (296)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHH
Confidence 446889999999999999999999999999999999999999999999999999999999999997 7777789999999
Q ss_pred HHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhh
Q 001486 367 YKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTT 446 (1070)
Q Consensus 367 ~e~~~g~~~eA~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~ 446 (1070)
.+...|++++|...|++++ ..+|+... ...|..+....+++++|+..|++++... .+. .|. ++.+.. .
T Consensus 141 ~l~~~g~~~eA~~~~~~al-~~~P~~~~-~~~~~~l~~~~~~~~~A~~~l~~~~~~~-----~~~---~~~-~~~~~~-~ 208 (296)
T PRK11189 141 ALYYGGRYELAQDDLLAFY-QDDPNDPY-RALWLYLAESKLDPKQAKENLKQRYEKL-----DKE---QWG-WNIVEF-Y 208 (296)
T ss_pred HHHHCCCHHHHHHHHHHHH-HhCCCCHH-HHHHHHHHHccCCHHHHHHHHHHHHhhC-----Ccc---ccH-HHHHHH-H
Confidence 9999999999999999999 56665542 1122233445688999999998877652 111 222 333333 4
Q ss_pred cCCHHHH--HHHHHHH----HhhCCCcHHHHHHHHHHHHHcCCCcchhHHHHHHHHHhccC
Q 001486 447 TGSADNA--RDILIDG----IKHVPNCKLLLEELIKFTMVHGGRSHISIVDAVISNALYSR 501 (1070)
Q Consensus 447 ~g~~e~A--r~iyeka----L~~~P~~~~lw~~y~~~e~~~g~~~~~~~ar~l~ekAl~~~ 501 (1070)
.|+++.+ ++.+.++ ++..|+..+.|..++......|+.++ |+..|++|+..+
T Consensus 209 lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~---A~~~~~~Al~~~ 266 (296)
T PRK11189 209 LGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDE---AAALFKLALANN 266 (296)
T ss_pred ccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHH---HHHHHHHHHHhC
Confidence 5555433 3333332 24455666789999999999998766 679999999643
No 72
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=5.7e-10 Score=121.41 Aligned_cols=365 Identities=10% Similarity=-0.001 Sum_probs=264.3
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHCCCCHHHHH--HHHHHHH-HhCCHHHHHHHHHHHH
Q 001486 24 QGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWR--KYADHKA-RLCSIDKVVEVFERAV 100 (1070)
Q Consensus 24 ~~le~~l~~nP~s~~~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P~s~~lW~--~ya~~e~-~~~~~e~A~~lferAL 100 (1070)
..|.+.|..-|--...-..+++...+. .+ ....--.++...|....+|+ ....+.. ....+.-+..+|-.-+
T Consensus 151 l~ykevvrecp~aL~~i~~ll~l~v~g----~e-~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~ 225 (564)
T KOG1174|consen 151 LAYKEVIRECPMALQVIEALLELGVNG----NE-INSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDN 225 (564)
T ss_pred HhhhHHHHhcchHHHHHHHHHHHhhcc----hh-hhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhh
Confidence 367788888887777766666654432 21 12233344555666555443 3322222 2234556667777778
Q ss_pred HhcCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHcccHHHHHHHHHHHHccCCcCHH
Q 001486 101 QSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLH 180 (1070)
Q Consensus 101 ~~~P~s~~lW~~y~~~~~~~~~~~~~ar~vferAL~~~p~~~~s~~lW~~yi~fe~~~~~~~~a~~iy~raL~~p~~~~~ 180 (1070)
..+|.++.|....++.+... |+...+.-.|+.++-+.|... .-...|.-++...|..+.+.++..+.+.+......
T Consensus 226 ~~lr~NvhLl~~lak~~~~~-Gdn~~a~~~Fe~~~~~dpy~i---~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~ 301 (564)
T KOG1174|consen 226 TTLRCNEHLMMALGKCLYYN-GDYFQAEDIFSSTLCANPDNV---EAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTAS 301 (564)
T ss_pred ccCCccHHHHHHHhhhhhhh-cCchHHHHHHHHHhhCChhhh---hhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchh
Confidence 88899999999999999988 999999999999998776643 45567788888888999998888777654322111
Q ss_pred HHHHHHHHHHHHHHHHhhhcchhhHHHHHHHhhcCCccccccchhhhHHHhhhcCcchhHHHHHHHHHHHHHHHHHHHHH
Q 001486 181 HYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEA 260 (1070)
Q Consensus 181 ~~~~~~~~~~~~~~eal~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~i~~~~~~~~~~~~a~~~~~~~~~~~~~y~~a 260 (1070)
.++.. +.+ .| .++.|.
T Consensus 302 ~wfV~-----------------------------~~~--l~-------------------------------~~K~~~-- 317 (564)
T KOG1174|consen 302 HWFVH-----------------------------AQL--LY-------------------------------DEKKFE-- 317 (564)
T ss_pred hhhhh-----------------------------hhh--hh-------------------------------hhhhHH--
Confidence 11100 000 00 000011
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhCChh
Q 001486 261 SQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGRE 340 (1070)
Q Consensus 261 ~~~~~~~~~fE~ai~~~~~~~~~~~p~~~~~W~~yi~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e 340 (1070)
+++..-|+.|+ .++.+...++-.+.++...|+...|+-.|+.|...-|...+.|--+...|...|++.
T Consensus 318 ----rAL~~~eK~I~--------~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~k 385 (564)
T KOG1174|consen 318 ----RALNFVEKCID--------SEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFK 385 (564)
T ss_pred ----HHHHHHHHHhc--------cCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHH
Confidence 12222345554 567788899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhchHHHHHHH-HHH-HHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001486 341 IASYALDRATQIFLKRLPVIHLFNA-RYK-EQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKE 418 (1070)
Q Consensus 341 ~A~~il~rAl~~~~~~~p~i~~~~a-~~e-~~~g~~~eA~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~vyek 418 (1070)
+|...-+.+++. .+......-..+ ... ..-.--++|.+++++++ ..+|+++.+....+.+..+.|.++.+++++++
T Consensus 386 EA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L-~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~ 463 (564)
T KOG1174|consen 386 EANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL-KINPIYTPAVNLIAELCQVEGPTKDIIKLLEK 463 (564)
T ss_pred HHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhh-ccCCccHHHHHHHHHHHHhhCccchHHHHHHH
Confidence 999988888887 344443333332 221 11222378999999999 78999999999999999999999999999999
Q ss_pred HHHHHHhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCC
Q 001486 419 ALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLLLEELIKFTMVHGG 483 (1070)
Q Consensus 419 al~~~~~~~~~~~~~~l~i~~A~~~~~~~g~~e~Ar~iyekaL~~~P~~~~lw~~y~~~e~~~g~ 483 (1070)
+|.. ..+..+...+|.++. ..+.+.+|...|..||+.+|++.....-+-.+|+...+
T Consensus 464 ~L~~-------~~D~~LH~~Lgd~~~-A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK~~~~ 520 (564)
T KOG1174|consen 464 HLII-------FPDVNLHNHLGDIMR-AQNEPQKAMEYYYKALRQDPKSKRTLRGLRLLEKSDDE 520 (564)
T ss_pred HHhh-------ccccHHHHHHHHHHH-HhhhHHHHHHHHHHHHhcCccchHHHHHHHHHHhccCC
Confidence 9997 445678999999998 99999999999999999999999877777777766543
No 73
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.38 E-value=4.3e-10 Score=131.60 Aligned_cols=285 Identities=9% Similarity=-0.040 Sum_probs=211.1
Q ss_pred HHHHHHHhCCCC----HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHH
Q 001486 25 GLEEFIAEGSLD----FDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCY-GYWRKYADHKARLCSIDKVVEVFERA 99 (1070)
Q Consensus 25 ~le~~l~~nP~s----~~~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P~s~-~lW~~ya~~e~~~~~~e~A~~lferA 99 (1070)
..++.+.++|.+ .-.++..++..... |+.+.+...|+++.+..|+.. ......+++....++++.|...++++
T Consensus 102 ~A~k~l~~~~~~~~~p~l~~llaA~aA~~~--g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~ 179 (398)
T PRK10747 102 QVEKLMTRNADHAEQPVVNYLLAAEAAQQR--GDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKL 179 (398)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHC--CCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 456777777664 34444445554556 999999999999999999985 44445588889999999999999999
Q ss_pred HHhcCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHcccHHHHHHHHHHHHccCCcCH
Q 001486 100 VQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKL 179 (1070)
Q Consensus 100 L~~~P~s~~lW~~y~~~~~~~~~~~~~ar~vferAL~~~p~~~~s~~lW~~yi~fe~~~~~~~~a~~iy~raL~~p~~~~ 179 (1070)
++..|.++.+....+..+... |+.+.+.+++++..+....+. +.+.++..++
T Consensus 180 ~~~~P~~~~al~ll~~~~~~~-gdw~~a~~~l~~l~k~~~~~~-------------------~~~~~l~~~a-------- 231 (398)
T PRK10747 180 LEVAPRHPEVLRLAEQAYIRT-GAWSSLLDILPSMAKAHVGDE-------------------EHRAMLEQQA-------- 231 (398)
T ss_pred HhcCCCCHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHcCCCCH-------------------HHHHHHHHHH--------
Confidence 999999999999999999999 999999999999888654421 1111111111
Q ss_pred HHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHhhcCCccccccchhhhHHHhhhcCcchhHHHHHHHHHHHHHHHHHHHH
Q 001486 180 HHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKE 259 (1070)
Q Consensus 180 ~~~~~~~~~~~~~~~eal~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~i~~~~~~~~~~~~a~~~~~~~~~~~~~y~~ 259 (1070)
|........ . . .+ .. .+.
T Consensus 232 ------~~~l~~~~~---~---------------~-------~~--~~-----------------~l~------------ 249 (398)
T PRK10747 232 ------WIGLMDQAM---A---------------D-------QG--SE-----------------GLK------------ 249 (398)
T ss_pred ------HHHHHHHHH---H---------------h-------cC--HH-----------------HHH------------
Confidence 000000000 0 0 00 00 000
Q ss_pred HHHHHHHHHHHHHhhcccCCCCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhCCh
Q 001486 260 ASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGR 339 (1070)
Q Consensus 260 a~~~~~~~~~fE~ai~~~~~~~~~~~p~~~~~W~~yi~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~ 339 (1070)
+.+.. + ....+++..++..|+..+...|+.+.|..+.++++. .+.++.+...|+.+. .++.
T Consensus 250 --~~w~~-------l-------p~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~-~~~~~~l~~l~~~l~--~~~~ 310 (398)
T PRK10747 250 --RWWKN-------Q-------SRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK-RQYDERLVLLIPRLK--TNNP 310 (398)
T ss_pred --HHHHh-------C-------CHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-cCCCHHHHHHHhhcc--CCCh
Confidence 00000 0 001244567889999999999999999999999999 456778888787653 4889
Q ss_pred hHHHHHHHHHHHHHhhhchHHHHHHHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001486 340 EIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEA 419 (1070)
Q Consensus 340 e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~eA~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~vyeka 419 (1070)
++++..+++.++. .|+++.+++.+|.+..+.+++++|++.|++++ ...|+. ..+..++.++...|+.++|..+|+++
T Consensus 311 ~~al~~~e~~lk~-~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al-~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 311 EQLEKVLRQQIKQ-HGDTPLLWSTLGQLLMKHGEWQEASLAFRAAL-KQRPDA-YDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred HHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-hcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999999987 78889999999999999999999999999999 666764 45678899999999999999999999
Q ss_pred HHHH
Q 001486 420 LETA 423 (1070)
Q Consensus 420 l~~~ 423 (1070)
+.+.
T Consensus 388 l~~~ 391 (398)
T PRK10747 388 LMLT 391 (398)
T ss_pred Hhhh
Confidence 9874
No 74
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.37 E-value=4.5e-11 Score=134.06 Aligned_cols=225 Identities=12% Similarity=0.060 Sum_probs=168.5
Q ss_pred CHHHHHHHHHHHhccCC----CCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhhhchHHHHHHHHHHHHhCCHHHHHH
Q 001486 304 DFDWVVKLYERCLIPCA----DYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARA 379 (1070)
Q Consensus 304 ~~~~a~~~yerAL~~~p----~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~eA~~ 379 (1070)
..+.++..+.++|...+ ....+|+..|..+...|+.++|+..|++|+.. .|+++.+|+..|.++...|++++|+.
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l-~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALAL-RPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 34566777777775333 34678999999999999999999999999997 78888999999999999999999999
Q ss_pred HHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 001486 380 AFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILID 459 (1070)
Q Consensus 380 ~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~g~~e~Ar~iyek 459 (1070)
.|++++ +++|++..+|..++.++...|++++|...|+++++. .|.++. ...|..+.. ..++.++|...|++
T Consensus 120 ~~~~Al-~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~------~P~~~~-~~~~~~l~~-~~~~~~~A~~~l~~ 190 (296)
T PRK11189 120 AFDSVL-ELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD------DPNDPY-RALWLYLAE-SKLDPKQAKENLKQ 190 (296)
T ss_pred HHHHHH-HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHH-HHHHHHHHH-ccCCHHHHHHHHHH
Confidence 999999 789999999999999999999999999999999998 566553 222333334 67899999999988
Q ss_pred HHhhCCCcHHHHHHHHHHHHHcCCCcchhHHHHHHHHHhccCCcccccCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 001486 460 GIKHVPNCKLLLEELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQ 539 (1070)
Q Consensus 460 aL~~~P~~~~lw~~y~~~e~~~g~~~~~~~ar~l~ekAl~~~~~~s~~l~~~~~~~l~~~~~~~e~~~G~~~~a~~~~~r 539 (1070)
++...+.. .|. +.......|+.... ..++.+....... ..+. ......|...+......|+.++|..+|++
T Consensus 191 ~~~~~~~~--~~~-~~~~~~~lg~~~~~----~~~~~~~~~~~~~-~~l~-~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~ 261 (296)
T PRK11189 191 RYEKLDKE--QWG-WNIVEFYLGKISEE----TLMERLKAGATDN-TELA-ERLCETYFYLAKYYLSLGDLDEAAALFKL 261 (296)
T ss_pred HHhhCCcc--ccH-HHHHHHHccCCCHH----HHHHHHHhcCCCc-HHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 87654332 343 33333345655432 2444443211100 0111 11234677777777899999999999999
Q ss_pred HHHhCCCC
Q 001486 540 HIKLFPHT 547 (1070)
Q Consensus 540 a~~~~p~~ 547 (1070)
+++..|.+
T Consensus 262 Al~~~~~~ 269 (296)
T PRK11189 262 ALANNVYN 269 (296)
T ss_pred HHHhCCch
Confidence 99999753
No 75
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.36 E-value=3.7e-10 Score=123.30 Aligned_cols=199 Identities=14% Similarity=0.025 Sum_probs=164.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhhhchHHHHHHHHHHHH
Q 001486 291 NWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQ 370 (1070)
Q Consensus 291 ~W~~yi~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~ 370 (1070)
...+-+.....+|++++|.+.|+.||..+....+..++.+..++..|++++|++.|-+.-.+ +.++..+....+.+++.
T Consensus 492 a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~ 570 (840)
T KOG2003|consen 492 ALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYEL 570 (840)
T ss_pred HhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHH
Confidence 33344444445899999999999999988888999999999999999999999999887766 44566788888999999
Q ss_pred hCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhcCCH
Q 001486 371 IGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSA 450 (1070)
Q Consensus 371 ~g~~~eA~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~g~~ 450 (1070)
..+...|+++|..+. .+-|..+.++.++++++.+.|+...|..++-..... +|.+-+..-.+|..|. ...-.
T Consensus 571 led~aqaie~~~q~~-slip~dp~ilskl~dlydqegdksqafq~~ydsyry------fp~nie~iewl~ayyi-dtqf~ 642 (840)
T KOG2003|consen 571 LEDPAQAIELLMQAN-SLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY------FPCNIETIEWLAAYYI-DTQFS 642 (840)
T ss_pred hhCHHHHHHHHHHhc-ccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc------cCcchHHHHHHHHHHH-hhHHH
Confidence 999999999999997 677888999999999999999999999998877776 5777777666676665 78889
Q ss_pred HHHHHHHHHHHhhCCCcHHHHH-HHHHHHHHcCCCcchhHHHHHHHHHhccCC
Q 001486 451 DNARDILIDGIKHVPNCKLLLE-ELIKFTMVHGGRSHISIVDAVISNALYSRP 502 (1070)
Q Consensus 451 e~Ar~iyekaL~~~P~~~~lw~-~y~~~e~~~g~~~~~~~ar~l~ekAl~~~~ 502 (1070)
++|+.+|++|--.-|+... |. .-+...++.|+..+ +-++|+..-.++|
T Consensus 643 ekai~y~ekaaliqp~~~k-wqlmiasc~rrsgnyqk---a~d~yk~~hrkfp 691 (840)
T KOG2003|consen 643 EKAINYFEKAALIQPNQSK-WQLMIASCFRRSGNYQK---AFDLYKDIHRKFP 691 (840)
T ss_pred HHHHHHHHHHHhcCccHHH-HHHHHHHHHHhcccHHH---HHHHHHHHHHhCc
Confidence 9999999999878887655 54 44578888888765 5688888776665
No 76
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=1.1e-08 Score=111.78 Aligned_cols=244 Identities=10% Similarity=0.066 Sum_probs=148.9
Q ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhhhchHHHHH
Q 001486 284 LDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLF 363 (1070)
Q Consensus 284 ~~p~~~~~W~~yi~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~ 363 (1070)
++|..+..--.|+-++...|++++...+-.+.+........-|+--+..++...++..|...-+|+|.+ .++.-..++.
T Consensus 261 ~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~-~~r~~~alil 339 (564)
T KOG1174|consen 261 ANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDS-EPRNHEALIL 339 (564)
T ss_pred CChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhcc-CcccchHHHh
Confidence 455556566666666666666666666666666655555566666666666666666666666666665 3323335555
Q ss_pred HHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHH-HH
Q 001486 364 NARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFS-RL 442 (1070)
Q Consensus 364 ~a~~e~~~g~~~eA~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A-~~ 442 (1070)
-|.++...++.++|.-.|+.|. .+.|..++.|-.+...+.-.|.+.+|...-..+++.+ +..++..--+| .+
T Consensus 340 KG~lL~~~~R~~~A~IaFR~Aq-~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~------~~sA~~LtL~g~~V 412 (564)
T KOG1174|consen 340 KGRLLIALERHTQAVIAFRTAQ-MLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLF------QNSARSLTLFGTLV 412 (564)
T ss_pred ccHHHHhccchHHHHHHHHHHH-hcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHh------hcchhhhhhhccee
Confidence 5666666666666666666665 4555556666666666666666666666666666663 44444444443 22
Q ss_pred HHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCCcchhHHHHHHHHHhccCCcccccCChhhHHHHHHHHHH
Q 001486 443 TYTTTGSADNARDILIDGIKHVPNCKLLLEELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQ 522 (1070)
Q Consensus 443 ~~~~~g~~e~Ar~iyekaL~~~P~~~~lw~~y~~~e~~~g~~~~~~~ar~l~ekAl~~~~~~s~~l~~~~~~~l~~~~~~ 522 (1070)
....-.--++|.++|+++|+..|.........+++....|..+++ -.++|+++...++ ..|.....+
T Consensus 413 ~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~---i~LLe~~L~~~~D----------~~LH~~Lgd 479 (564)
T KOG1174|consen 413 LFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDI---IKLLEKHLIIFPD----------VNLHNHLGD 479 (564)
T ss_pred eccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchH---HHHHHHHHhhccc----------cHHHHHHHH
Confidence 221333456777777777777777766666666666666655553 3677777754331 235556666
Q ss_pred HHHHhCCHHHHHHHHHHHHHhCCCCc
Q 001486 523 FLDLCGTIHDIRNAWNQHIKLFPHTV 548 (1070)
Q Consensus 523 ~e~~~G~~~~a~~~~~ra~~~~p~~~ 548 (1070)
|..-...+.+++..|..|+++.|.+.
T Consensus 480 ~~~A~Ne~Q~am~~y~~ALr~dP~~~ 505 (564)
T KOG1174|consen 480 IMRAQNEPQKAMEYYYKALRQDPKSK 505 (564)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCccch
Confidence 66666677777777777777777654
No 77
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.34 E-value=9.1e-09 Score=120.56 Aligned_cols=382 Identities=14% Similarity=0.090 Sum_probs=244.8
Q ss_pred HHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc--CCCH
Q 001486 30 IAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSA--TYSV 107 (1070)
Q Consensus 30 l~~nP~s~~~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P~s~~lW~~ya~~e~~~~~~e~A~~lferAL~~~--P~s~ 107 (1070)
....-+|...|-.+.-.+... |.++.+.+.||+++..-=...+.|..++--+...+.-..|..+++.++... |.++
T Consensus 316 ~~~~qnd~ai~d~Lt~al~~~--g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~ 393 (799)
T KOG4162|consen 316 LKKFQNDAAIFDHLTFALSRC--GQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDI 393 (799)
T ss_pred HhhhcchHHHHHHHHHHHHHH--HHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcc
Confidence 334446777887776666666 899999999999999888889999999999998888899999999999988 7778
Q ss_pred HHHHHHHHHHHhhCCChhHHHHHHHHHHHHcCCCC--CchHH----HHHHHHHHHH-------cccHHHHHHHHHHHHcc
Q 001486 108 DVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDY--LCHTM----WDKYIEFEIS-------QQRWSSLAQIFVQTLRF 174 (1070)
Q Consensus 108 ~lW~~y~~~~~~~~~~~~~ar~vferAL~~~p~~~--~s~~l----W~~yi~fe~~-------~~~~~~a~~iy~raL~~ 174 (1070)
...+.-.+.+.+..+.++++...-.+|+..++..- ..... -+.|..-... ..-..+....+++++.+
T Consensus 394 s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~ 473 (799)
T KOG4162|consen 394 SVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQF 473 (799)
T ss_pred hHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhc
Confidence 87777777777665666666666666666442210 00010 0111110000 00112333444444443
Q ss_pred CCcCHHHH-HHHHHHHHHHHHHHhhhcchhhHHHHHHHhhcCCccccccchhhhHHHhhhcCcchhHHHHHHHHHHHHHH
Q 001486 175 PSKKLHHY-YDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIG 253 (1070)
Q Consensus 175 p~~~~~~~-~~~~~~~~~~~~eal~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~i~~~~~~~~~~~~a~~~~~~~~~~ 253 (1070)
.+.+...+ |..+...+.
T Consensus 474 d~~dp~~if~lalq~A~~-------------------------------------------------------------- 491 (799)
T KOG4162|consen 474 DPTDPLVIFYLALQYAEQ-------------------------------------------------------------- 491 (799)
T ss_pred CCCCchHHHHHHHHHHHH--------------------------------------------------------------
Confidence 22222111 111111000
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCCCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCH----------
Q 001486 254 EQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYP---------- 323 (1070)
Q Consensus 254 ~~~y~~a~~~~~~~~~fE~ai~~~~~~~~~~~p~~~~~W~~yi~~~~~~g~~~~a~~~yerAL~~~p~~~---------- 323 (1070)
+.+..+.....++++. ...+....|+-++..+...+++..|+.+.+-++...|++.
T Consensus 492 -------R~l~sAl~~~~eaL~l-------~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~ 557 (799)
T KOG4162|consen 492 -------RQLTSALDYAREALAL-------NRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIE 557 (799)
T ss_pred -------HhHHHHHHHHHHHHHh-------cCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhh
Confidence 0111111111111110 1233445666666665556666666666666665544422
Q ss_pred -----------------HHHHH---------HHHHHHhh-------CChhHHHHHHHHHHHHHh------------hh--
Q 001486 324 -----------------EFWMR---------YVDFMESK-------GGREIASYALDRATQIFL------------KR-- 356 (1070)
Q Consensus 324 -----------------~lW~~---------ya~~l~~~-------g~~e~A~~il~rAl~~~~------------~~-- 356 (1070)
.+|-. -+..+... ++..+|.+.+.++..... |.
T Consensus 558 ~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~ 637 (799)
T KOG4162|consen 558 LTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSST 637 (799)
T ss_pred hhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCccc
Confidence 22330 00001111 112234444444433210 10
Q ss_pred -----------chHHHHHHHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 001486 357 -----------LPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAE 425 (1070)
Q Consensus 357 -----------~p~i~~~~a~~e~~~g~~~eA~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~ 425 (1070)
.-.+|+..+.+..+.++.++|+.++.++. .+++-...+|+..+.+....|..++|...|..|+.+
T Consensus 638 ~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~-~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l--- 713 (799)
T KOG4162|consen 638 VLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEAS-KIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL--- 713 (799)
T ss_pred ccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH-hcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc---
Confidence 01478888888899999999999998887 677888889999999999999999999999999998
Q ss_pred hccCCCcHHHHHHHHHHHHhhcCCHHHHHH--HHHHHHhhCCCcHHHHHHHHHHHHHcCCCcchhHHHHHHHHHhcc
Q 001486 426 QRKFHTLPLLYVQFSRLTYTTTGSADNARD--ILIDGIKHVPNCKLLLEELIKFTMVHGGRSHISIVDAVISNALYS 500 (1070)
Q Consensus 426 ~~~~~~~~~l~i~~A~~~~~~~g~~e~Ar~--iyekaL~~~P~~~~lw~~y~~~e~~~g~~~~~~~ar~l~ekAl~~ 500 (1070)
+|..+.+...+|.++. +.|+..-|.+ ++..+++.+|.+.+.|...+...+..|+.+. |-+.|.-|+.-
T Consensus 714 ---dP~hv~s~~Ala~~ll-e~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~---Aaecf~aa~qL 783 (799)
T KOG4162|consen 714 ---DPDHVPSMTALAELLL-ELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQ---AAECFQAALQL 783 (799)
T ss_pred ---CCCCcHHHHHHHHHHH-HhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHH---HHHHHHHHHhh
Confidence 7899999999999998 8887655555 9999999999999999999999999999876 56889888853
No 78
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.32 E-value=4.3e-08 Score=112.98 Aligned_cols=387 Identities=12% Similarity=0.047 Sum_probs=214.0
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcC
Q 001486 25 GLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSAT 104 (1070)
Q Consensus 25 ~le~~l~~nP~s~~~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P~s~~lW~~ya~~e~~~~~~e~A~~lferAL~~~P 104 (1070)
.....|+++|...+..--.+-.+-.. |+.++|-...+++++.++.|.-.|..++-+....++|++|+++|..||...|
T Consensus 29 ~~~~iL~k~~eHgeslAmkGL~L~~l--g~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~ 106 (700)
T KOG1156|consen 29 LIKQILKKFPEHGESLAMKGLTLNCL--GKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEK 106 (700)
T ss_pred HHHHHHHhCCccchhHHhccchhhcc--cchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCC
Confidence 34555666776666554444334445 7777777788888888888888888888887777788888888888888888
Q ss_pred CCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHcccHHHHHHHHHHHHcc---CCcCHHH
Q 001486 105 YSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRF---PSKKLHH 181 (1070)
Q Consensus 105 ~s~~lW~~y~~~~~~~~~~~~~ar~vferAL~~~p~~~~s~~lW~~yi~fe~~~~~~~~a~~iy~raL~~---p~~~~~~ 181 (1070)
++..||.+++-+-... ++++....+-.+.|...+. ...-|..++.--.-.|++..+..|.....+. ++...
T Consensus 107 dN~qilrDlslLQ~Qm-Rd~~~~~~tr~~LLql~~~---~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~-- 180 (700)
T KOG1156|consen 107 DNLQILRDLSLLQIQM-RDYEGYLETRNQLLQLRPS---QRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKE-- 180 (700)
T ss_pred CcHHHHHHHHHHHHHH-HhhhhHHHHHHHHHHhhhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHH--
Confidence 8888887776655555 7777777776666665554 3456766665444445555555554444321 01100
Q ss_pred HHHHHHHHHHHHHHHhhhcchhhHHHHHHHhhcCCccccccchhhhHHHhhhcCcchhHHHHHHHHHHHHHHHHHHHHHH
Q 001486 182 YYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEAS 261 (1070)
Q Consensus 182 ~~~~~~~~~~~~~eal~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~i~~~~~~~~~~~~a~~~~~~~~~~~~~y~~a~ 261 (1070)
.|+..+-.+... . .++ ..+.++.+.
T Consensus 181 ---~~e~se~~Ly~n------------~-i~~---------------------------------------E~g~~q~al 205 (700)
T KOG1156|consen 181 ---DYEHSELLLYQN------------Q-ILI---------------------------------------EAGSLQKAL 205 (700)
T ss_pred ---HHHHHHHHHHHH------------H-HHH---------------------------------------HcccHHHHH
Confidence 000000000000 0 000 000011111
Q ss_pred HHHHHHHHHHHhhcccCCCCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHH-hhCChh
Q 001486 262 QLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFME-SKGGRE 340 (1070)
Q Consensus 262 ~~~~~~~~fE~ai~~~~~~~~~~~p~~~~~W~~yi~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~-~~g~~e 340 (1070)
+.+...|..+ -+.+..-...++++.+.+..++|..+|.+.+..+|++...+..+-..+. -.+..+
T Consensus 206 ---e~L~~~e~~i-----------~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~ 271 (700)
T KOG1156|consen 206 ---EHLLDNEKQI-----------VDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLE 271 (700)
T ss_pred ---HHHHhhhhHH-----------HHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHH
Confidence 1111111111 0112222233455566666777777777777777776666666655554 222222
Q ss_pred HHHHHHHHHHHHHhh-hch--------------HHHHHHHHHHHHh-------------CCHHHHHHHHHHHhh------
Q 001486 341 IASYALDRATQIFLK-RLP--------------VIHLFNARYKEQI-------------GDTSAARAAFPESYI------ 386 (1070)
Q Consensus 341 ~A~~il~rAl~~~~~-~~p--------------~i~~~~a~~e~~~-------------g~~~eA~~~~~~al~------ 386 (1070)
....+|.+.-+.+.+ .+| .+.-.|..-+.+. .+..+. .++++.+.
T Consensus 272 ~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~-~~le~Lvt~y~~~L 350 (700)
T KOG1156|consen 272 ALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKV-AFLEKLVTSYQHSL 350 (700)
T ss_pred HHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHh-HHHHHHHHHHHhhc
Confidence 222333333222110 000 1111111111111 111111 12222210
Q ss_pred ------------ccChhhHHHHHHHH--HHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhcCCHHH
Q 001486 387 ------------DSDSRFIEKVTFKA--NMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADN 452 (1070)
Q Consensus 387 ------------~~~p~~~~~w~~~a--~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~g~~e~ 452 (1070)
...|.+.-+|..+. .-+.+.|+++.|....+.||+. -|+..++|+..|+++. +.|++++
T Consensus 351 ~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH------TPTliEly~~KaRI~k-H~G~l~e 423 (700)
T KOG1156|consen 351 SGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH------TPTLIELYLVKARIFK-HAGLLDE 423 (700)
T ss_pred ccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc------CchHHHHHHHHHHHHH-hcCChHH
Confidence 11244455676553 3455679999999999999998 5888999999999987 8999999
Q ss_pred HHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCCcchhHHHHHHHH
Q 001486 453 ARDILIDGIKHVPNCKLLLEELIKFTMVHGGRSHISIVDAVISN 496 (1070)
Q Consensus 453 Ar~iyekaL~~~P~~~~lw~~y~~~e~~~g~~~~~~~ar~l~ek 496 (1070)
|..+++.|-+.+-.+..|=..++++..+.+..+.++.+...|.|
T Consensus 424 Aa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr 467 (700)
T KOG1156|consen 424 AAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTR 467 (700)
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhh
Confidence 99999999888776666666788887777766666555555543
No 79
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.30 E-value=6e-10 Score=130.36 Aligned_cols=256 Identities=13% Similarity=0.043 Sum_probs=192.2
Q ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--------CCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHh-
Q 001486 284 LDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIP--------CADYPEFWMRYVDFMESKGGREIASYALDRATQIFL- 354 (1070)
Q Consensus 284 ~~p~~~~~W~~yi~~~~~~g~~~~a~~~yerAL~~--------~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~- 354 (1070)
..|....+...++..+...|+++.|..+|++||.. ++.....-..+|.+|...+++++|..+|++|+.+..
T Consensus 194 ~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~ 273 (508)
T KOG1840|consen 194 EDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREE 273 (508)
T ss_pred CCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 45667777788888899999999999999999976 455555566799999999999999999999999854
Q ss_pred ---hhch---HHHHHHHHHHHHhCCHHHHHHHHHHHhhc-------cChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001486 355 ---KRLP---VIHLFNARYKEQIGDTSAARAAFPESYID-------SDSRFIEKVTFKANMERRLGNFVAACDTYKEALE 421 (1070)
Q Consensus 355 ---~~~p---~i~~~~a~~e~~~g~~~eA~~~~~~al~~-------~~p~~~~~w~~~a~le~~~g~~~~A~~vyekal~ 421 (1070)
++.| .++..+|.++.+.|++++|+..+++|++- ..+.....+...+.++...+.++.|..+|.++++
T Consensus 274 ~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~ 353 (508)
T KOG1840|consen 274 VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALK 353 (508)
T ss_pred hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 2333 56777888889999999999999999741 1234455677778888889999999999999999
Q ss_pred HHHhh--ccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhC----C-----CcHHHHHHHHHHHHHcCCCcchhHH
Q 001486 422 TAAEQ--RKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHV----P-----NCKLLLEELIKFTMVHGGRSHISIV 490 (1070)
Q Consensus 422 ~~~~~--~~~~~~~~l~i~~A~~~~~~~g~~e~Ar~iyekaL~~~----P-----~~~~lw~~y~~~e~~~g~~~~~~~a 490 (1070)
++... ...+..++++.++|.++. ..|++++|+.+|++||.+. . ....+|..-...+ ..+.... +
T Consensus 354 i~~~~~g~~~~~~a~~~~nl~~l~~-~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~-~~k~~~~---a 428 (508)
T KOG1840|consen 354 IYLDAPGEDNVNLAKIYANLAELYL-KMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYE-ELKKYEE---A 428 (508)
T ss_pred HHHhhccccchHHHHHHHHHHHHHH-HhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHH-Hhcccch---H
Confidence 98622 233467899999999998 9999999999999999964 2 1345776655553 3333333 3
Q ss_pred HHHHHHHhccCCcccccCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 001486 491 DAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQHIKLFPH 546 (1070)
Q Consensus 491 r~l~ekAl~~~~~~s~~l~~~~~~~l~~~~~~~e~~~G~~~~a~~~~~ra~~~~p~ 546 (1070)
-.+|++++.... ..+..-.+....+.-.+...+..|+++.|.++.++++.....
T Consensus 429 ~~l~~~~~~i~~--~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~ 482 (508)
T KOG1840|consen 429 EQLFEEAKDIMK--LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAREQ 482 (508)
T ss_pred HHHHHHHHHHHH--HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence 467777654321 011111223455566666778899999999999998876644
No 80
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.30 E-value=4.6e-09 Score=125.15 Aligned_cols=154 Identities=18% Similarity=0.148 Sum_probs=124.4
Q ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 001486 23 KQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQS 102 (1070)
Q Consensus 23 ~~~le~~l~~nP~s~~~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P~s~~lW~~ya~~e~~~~~~e~A~~lferAL~~ 102 (1070)
-..|-++++.+++-..+|-.++.+++.. .|..+|++.|.+|.+.+++++..|...++.+.+..+.+.|..+.-++-+.
T Consensus 478 l~ali~alrld~~~apaf~~LG~iYrd~--~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qk 555 (1238)
T KOG1127|consen 478 LHALIRALRLDVSLAPAFAFLGQIYRDS--DDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQK 555 (1238)
T ss_pred HHHHHHHHhcccchhHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhh
Confidence 3478899999999999999999999887 68889999999999999999999999999999988999988886666555
Q ss_pred cCCCH--HHHHHHHHHHHhhCCChhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHcccHHHHHHHHHHHHc-cCCcCH
Q 001486 103 ATYSV--DVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLR-FPSKKL 179 (1070)
Q Consensus 103 ~P~s~--~lW~~y~~~~~~~~~~~~~ar~vferAL~~~p~~~~s~~lW~~yi~fe~~~~~~~~a~~iy~raL~-~p~~~~ 179 (1070)
.|.-. .-|....-++++. ++...+..-|.-|++.-|.++ ..|....+-.-+.|.+..+.++|.|+.. -|.+.+
T Consensus 556 a~a~~~k~nW~~rG~yyLea-~n~h~aV~~fQsALR~dPkD~---n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y 631 (1238)
T KOG1127|consen 556 APAFACKENWVQRGPYYLEA-HNLHGAVCEFQSALRTDPKDY---NLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKY 631 (1238)
T ss_pred chHHHHHhhhhhccccccCc-cchhhHHHHHHHHhcCCchhH---HHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHH
Confidence 44332 3566655566665 788888888999998888754 6899999888888999999999999854 354443
Q ss_pred HHH
Q 001486 180 HHY 182 (1070)
Q Consensus 180 ~~~ 182 (1070)
..+
T Consensus 632 ~~f 634 (1238)
T KOG1127|consen 632 GRF 634 (1238)
T ss_pred HHH
Confidence 333
No 81
>PLN02789 farnesyltranstransferase
Probab=99.29 E-value=1.1e-09 Score=122.92 Aligned_cols=204 Identities=12% Similarity=-0.005 Sum_probs=165.2
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhC-ChhHHHHHHHHHHHHHhhhchHHHHHHH
Q 001486 287 IQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKG-GREIASYALDRATQIFLKRLPVIHLFNA 365 (1070)
Q Consensus 287 ~~~~~W~~yi~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g-~~e~A~~il~rAl~~~~~~~p~i~~~~a 365 (1070)
...++|--+-..+...+..++|+.+++++|..+|.+.++|...+.++...| .+++++..+++++.. .|++..+|...+
T Consensus 35 ~~~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~-npknyqaW~~R~ 113 (320)
T PLN02789 35 EFREAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED-NPKNYQIWHHRR 113 (320)
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH-CCcchHHhHHHH
Confidence 333444444455566778999999999999999999999999999999988 579999999999987 667777899888
Q ss_pred HHHHHhCCH--HHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHH
Q 001486 366 RYKEQIGDT--SAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLT 443 (1070)
Q Consensus 366 ~~e~~~g~~--~eA~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~ 443 (1070)
.+..+.|+. +++..++.+++ ..+|++..+|...+-+...+|.++++++.|+++|+. ++.+..+|...+.++
T Consensus 114 ~~l~~l~~~~~~~el~~~~kal-~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~------d~~N~sAW~~R~~vl 186 (320)
T PLN02789 114 WLAEKLGPDAANKELEFTRKIL-SLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE------DVRNNSAWNQRYFVI 186 (320)
T ss_pred HHHHHcCchhhHHHHHHHHHHH-HhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH------CCCchhHHHHHHHHH
Confidence 887777763 77899999999 789999999999999999999999999999999998 788899999998877
Q ss_pred Hhhc---CCH----HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCC-cchhHHHHHHHHHhc
Q 001486 444 YTTT---GSA----DNARDILIDGIKHVPNCKLLLEELIKFTMVHGGR-SHISIVDAVISNALY 499 (1070)
Q Consensus 444 ~~~~---g~~----e~Ar~iyekaL~~~P~~~~lw~~y~~~e~~~g~~-~~~~~ar~l~ekAl~ 499 (1070)
. .. |++ +++..+..++|+.+|++...|..+..+....+.. .+...+...+.+++.
T Consensus 187 ~-~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~ 249 (320)
T PLN02789 187 T-RSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS 249 (320)
T ss_pred H-hccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc
Confidence 5 43 333 5788888999999999999998887777663321 111124456666664
No 82
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.27 E-value=2.2e-08 Score=106.90 Aligned_cols=328 Identities=9% Similarity=0.017 Sum_probs=200.8
Q ss_pred hCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcCCCHHHHH
Q 001486 32 EGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWF 111 (1070)
Q Consensus 32 ~nP~s~~~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P~s~~lW~~ya~~e~~~~~~e~A~~lferAL~~~P~s~~lW~ 111 (1070)
.+|.++.-.+.+...+... +.+..|..-|-.|++.+|+++.....-+..+...|.-..|..-|.|.|..-|...-..+
T Consensus 33 ~~~advekhlElGk~lla~--~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARi 110 (504)
T KOG0624|consen 33 ASPADVEKHLELGKELLAR--GQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARI 110 (504)
T ss_pred CCHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHH
Confidence 4667888888888877666 88888999999999999999998888888888888888888889999999888888888
Q ss_pred HHHHHHHhhCCChhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHcccHHHHHHHHHHHHccCCcCHHHHHHHHHHHHH
Q 001486 112 HYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAG 191 (1070)
Q Consensus 112 ~y~~~~~~~~~~~~~ar~vferAL~~~p~~~~s~~lW~~yi~fe~~~~~~~~a~~iy~raL~~p~~~~~~~~~~~~~~~~ 191 (1070)
.-+.++++. |.++.|..=|+..|...|..-. .-..+-++... + ..|.+....+.+.+
T Consensus 111 QRg~vllK~-Gele~A~~DF~~vl~~~~s~~~---~~eaqskl~~~----~---------------e~~~l~~ql~s~~~ 167 (504)
T KOG0624|consen 111 QRGVVLLKQ-GELEQAEADFDQVLQHEPSNGL---VLEAQSKLALI----Q---------------EHWVLVQQLKSASG 167 (504)
T ss_pred Hhchhhhhc-ccHHHHHHHHHHHHhcCCCcch---hHHHHHHHHhH----H---------------HHHHHHHHHHHHhc
Confidence 888888888 9999999999988887664321 11111111100 0 01111111111110
Q ss_pred HHHHHhhhcchhhHHHHHHHhhcCCccccccchhhhHHHhhhcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001486 192 AWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFE 271 (1070)
Q Consensus 192 ~~~eal~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~i~~~~~~~~~~~~a~~~~~~~~~~~~~y~~a~~~~~~~~~fE 271 (1070)
.-+ +..+.... .
T Consensus 168 ~GD--------------------------------------------------------------~~~ai~~i------~ 179 (504)
T KOG0624|consen 168 SGD--------------------------------------------------------------CQNAIEMI------T 179 (504)
T ss_pred CCc--------------------------------------------------------------hhhHHHHH------H
Confidence 000 00000000 0
Q ss_pred HhhcccCCCCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHH
Q 001486 272 NLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQ 351 (1070)
Q Consensus 272 ~ai~~~~~~~~~~~p~~~~~W~~yi~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~ 351 (1070)
. +..+.|-...++...++++...|++..|+.-++.+-+..-++.+..+..+.++...|+.+.++...+.+++
T Consensus 180 ~--------llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK 251 (504)
T KOG0624|consen 180 H--------LLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK 251 (504)
T ss_pred H--------HHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc
Confidence 0 00011222233333333444444444444444444444444444444444444444444444444444444
Q ss_pred HHhhhchHHHHH------------HHHHHHHhCCHHHHHHHHHHHhhccChhhH----HHHHHHHHHHHHcCCHHHHHHH
Q 001486 352 IFLKRLPVIHLF------------NARYKEQIGDTSAARAAFPESYIDSDSRFI----EKVTFKANMERRLGNFVAACDT 415 (1070)
Q Consensus 352 ~~~~~~p~i~~~------------~a~~e~~~g~~~eA~~~~~~al~~~~p~~~----~~w~~~a~le~~~g~~~~A~~v 415 (1070)
+ .|+....+-. .++-..+.++|.++++..++.+ ..+|... ..+-....+++.-|.+.+|+..
T Consensus 252 l-dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vl-k~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqq 329 (504)
T KOG0624|consen 252 L-DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVL-KNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQ 329 (504)
T ss_pred c-CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH-hcCCcccceeeeeeheeeecccccCCHHHHHHH
Confidence 3 1111111111 1112244677888888888887 4555422 2233345567778999999999
Q ss_pred HHHHHHHHHhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHH
Q 001486 416 YKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKL 469 (1070)
Q Consensus 416 yekal~~~~~~~~~~~~~~l~i~~A~~~~~~~g~~e~Ar~iyekaL~~~P~~~~ 469 (1070)
..++|+. .+.+..++..-|..+. ....+|.|+.-|++|++.++++..
T Consensus 330 C~evL~~------d~~dv~~l~dRAeA~l-~dE~YD~AI~dye~A~e~n~sn~~ 376 (504)
T KOG0624|consen 330 CKEVLDI------DPDDVQVLCDRAEAYL-GDEMYDDAIHDYEKALELNESNTR 376 (504)
T ss_pred HHHHHhc------CchHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHhcCcccHH
Confidence 9999998 6888999999999987 888999999999999999998765
No 83
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.24 E-value=5.7e-10 Score=127.07 Aligned_cols=96 Identities=18% Similarity=0.114 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhhhchHHHHHHHHHH
Q 001486 289 LKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYK 368 (1070)
Q Consensus 289 ~~~W~~yi~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e 368 (1070)
.++-..++-++...|+|++++++|+-||...|++..+|.+||-.+....+.++|+..|.||+.+ .|..-.+|+.+|.-+
T Consensus 430 pdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL-qP~yVR~RyNlgIS~ 508 (579)
T KOG1125|consen 430 PDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQL-QPGYVRVRYNLGISC 508 (579)
T ss_pred hhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc-CCCeeeeehhhhhhh
Confidence 4566677777777889999999999999999999999999999998888899999999999997 566667888888888
Q ss_pred HHhCCHHHHHHHHHHHh
Q 001486 369 EQIGDTSAARAAFPESY 385 (1070)
Q Consensus 369 ~~~g~~~eA~~~~~~al 385 (1070)
...|.|++|.+.|..||
T Consensus 509 mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 509 MNLGAYKEAVKHLLEAL 525 (579)
T ss_pred hhhhhHHHHHHHHHHHH
Confidence 99999999999998887
No 84
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.22 E-value=1.6e-08 Score=120.56 Aligned_cols=415 Identities=12% Similarity=0.071 Sum_probs=254.1
Q ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 001486 23 KQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPL--CYGYWRKYADHKARLCSIDKVVEVFERAV 100 (1070)
Q Consensus 23 ~~~le~~l~~nP~s~~~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P~--s~~lW~~ya~~e~~~~~~e~A~~lferAL 100 (1070)
...|.++...|+.++.+|...++.+... .+.+.|..+.-++-...|- ....|....-.+.+.++...|+.-|.-||
T Consensus 512 ~kCf~KAFeLDatdaeaaaa~adtyae~--~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsAL 589 (1238)
T KOG1127|consen 512 KKCFDKAFELDATDAEAAAASADTYAEE--STWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSAL 589 (1238)
T ss_pred HHHHHHHhcCCchhhhhHHHHHHHhhcc--ccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHh
Confidence 4589999999999999999999988765 7899998887777666664 34567776667778889999999999999
Q ss_pred HhcCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHcCCCCCchHHHHHHHHHH-----HHcccHHHHHHHHHHHHcc-
Q 001486 101 QSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFE-----ISQQRWSSLAQIFVQTLRF- 174 (1070)
Q Consensus 101 ~~~P~s~~lW~~y~~~~~~~~~~~~~ar~vferAL~~~p~~~~s~~lW~~yi~fe-----~~~~~~~~a~~iy~raL~~- 174 (1070)
...|+++..|..++..+.+. |.++.|.++|+||...-|.+ .|.+|. ...|.++.+..++...+..
T Consensus 590 R~dPkD~n~W~gLGeAY~~s-Gry~~AlKvF~kAs~LrP~s--------~y~~fk~A~~ecd~GkYkeald~l~~ii~~~ 660 (1238)
T KOG1127|consen 590 RTDPKDYNLWLGLGEAYPES-GRYSHALKVFTKASLLRPLS--------KYGRFKEAVMECDNGKYKEALDALGLIIYAF 660 (1238)
T ss_pred cCCchhHHHHHHHHHHHHhc-CceehHHHhhhhhHhcCcHh--------HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999 99999999999999876653 233333 3356777777766665531
Q ss_pred ----C-CcCHHHHHHH----------HHHHHHHHHHHhhhcchhhHHHHHHHhhcCCccccccchhhhHHHh------hh
Q 001486 175 ----P-SKKLHHYYDS----------FKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIK------DL 233 (1070)
Q Consensus 175 ----p-~~~~~~~~~~----------~~~~~~~~~eal~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~i~------~~ 233 (1070)
+ ...+.+.+.. +.+..+.++..+ +...-.+.... .++.-.|.+.. -+
T Consensus 661 s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksi--------e~f~~~l~h~~----~~~~~~Wi~asdac~~f~q 728 (1238)
T KOG1127|consen 661 SLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSI--------ESFIVSLIHSL----QSDRLQWIVASDACYIFSQ 728 (1238)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHH--------HHHHHHHHHhh----hhhHHHHHHHhHHHHHHHH
Confidence 0 0111111100 000111111111 11111111000 00111111100 01
Q ss_pred cCcchhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhcccCCCCCCCChHHHHHHHHHHHHHHH-------cC
Q 001486 234 LDPSVDLVRSKAIQKYRFIGEQIYKEASQL---DEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEK-------QG 303 (1070)
Q Consensus 234 ~~~~~~~~~a~~~~~~~~~~~~~y~~a~~~---~~~~~~fE~ai~~~~~~~~~~~p~~~~~W~~yi~~~~~-------~g 303 (1070)
++ +++.... +.++..+-++..... .-....++..+...-+ -....-|.+++.-+.+ .+
T Consensus 729 ~e--~~~vn~h----~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl------~~~~~~WyNLGinylr~f~~l~et~ 796 (1238)
T KOG1127|consen 729 EE--PSIVNMH----YLIILSKQLEKTGALKKNDLLFLGYECGIAHLSL------AIHMYPWYNLGINYLRYFLLLGETM 796 (1238)
T ss_pred hc--ccchHHH----HHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHH------hhccchHHHHhHHHHHHHHHcCCcc
Confidence 11 0000000 011111111111100 0011122222211000 0113457776543322 12
Q ss_pred -CHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhhhchHHHHHHHHHHHHhCCHHHHHHHHH
Q 001486 304 -DFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFP 382 (1070)
Q Consensus 304 -~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~eA~~~~~ 382 (1070)
+...|+.++.+++..+.++..+|..++.+ ...|.+.-|-..|-+++.. .|.+...|+.++.+...+.+++-|...|.
T Consensus 797 ~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~d~E~A~~af~ 874 (1238)
T KOG1127|consen 797 KDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLENQDFEHAEPAFS 874 (1238)
T ss_pred hhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccceeEEecccHHHhhHHHH
Confidence 23478999999999999999999999986 5557788888888888876 66777899999999999999999999999
Q ss_pred HHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhcCCHH----------H
Q 001486 383 ESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSAD----------N 452 (1070)
Q Consensus 383 ~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~g~~e----------~ 452 (1070)
++. .++|.+...|+.-+.+.+..|++-++..+|...-++. ...+......+|+.-..+-. .+|+++ .
T Consensus 875 ~~q-SLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~-~~~gka~~f~Yw~c~te~h~-~Ng~~e~~I~t~~ki~s 951 (1238)
T KOG1127|consen 875 SVQ-SLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELC-SKEGKAKKFQYWLCATEIHL-QNGNIEESINTARKISS 951 (1238)
T ss_pred hhh-hcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhh-ccccccchhhHHHHHHHHHH-hccchHHHHHHhhhhhh
Confidence 998 8899999999999999999999999999998744442 12222223334443333322 344433 3
Q ss_pred HHHHHHHHHhhCCCcHHHHHHHHHH
Q 001486 453 ARDILIDGIKHVPNCKLLLEELIKF 477 (1070)
Q Consensus 453 Ar~iyekaL~~~P~~~~lw~~y~~~ 477 (1070)
|--+.++-+...|+....+...+.+
T Consensus 952 As~al~~yf~~~p~~~fAy~~~gst 976 (1238)
T KOG1127|consen 952 ASLALSYYFLGHPQLCFAYAANGST 976 (1238)
T ss_pred hHHHHHHHHhcCcchhHHHHHHHhH
Confidence 3334555666677765444433333
No 85
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=3.3e-08 Score=112.09 Aligned_cols=391 Identities=12% Similarity=0.032 Sum_probs=239.8
Q ss_pred CcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChhHHHHHHH
Q 001486 53 DDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFK 132 (1070)
Q Consensus 53 ~~~~~a~~vyeraL~~~P~s~~lW~~ya~~e~~~~~~e~A~~lferAL~~~P~s~~lW~~y~~~~~~~~~~~~~ar~vfe 132 (1070)
++++.|+..|..++.+.|.+--++-+-..-+.++++|++|.+--.++++.+|.-.+-|...+.-..-. |++++|+..|.
T Consensus 16 ~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~l-g~~~eA~~ay~ 94 (539)
T KOG0548|consen 16 GDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGL-GDYEEAILAYS 94 (539)
T ss_pred ccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhc-ccHHHHHHHHH
Confidence 89999999999999999999888888888899999999999999999999999999999998888877 99999999999
Q ss_pred HHHHHcCCCCCchHHHHHHHHHHHHc---ccHHHHHHHHHHHHccCCcCHHHHHHHHHHHHHHHHHHhhhcchhhHHHHH
Q 001486 133 RALSFVGKDYLCHTMWDKYIEFEISQ---QRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQS 209 (1070)
Q Consensus 133 rAL~~~p~~~~s~~lW~~yi~fe~~~---~~~~~a~~iy~raL~~p~~~~~~~~~~~~~~~~~~~eal~~~~~~~~~~~~ 209 (1070)
++|+..|.+ ..|..-..+-+... +..-.--.++.+....|....-..-..|...+..+...-.
T Consensus 95 ~GL~~d~~n---~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~----------- 160 (539)
T KOG0548|consen 95 EGLEKDPSN---KQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPT----------- 160 (539)
T ss_pred HHhhcCCch---HHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcH-----------
Confidence 999987764 22222221111000 0000000111111122211111111122222222110000
Q ss_pred HHhhcCCccccccchhhhHHHhhhcC----------------c-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001486 210 ELVLEGEVPAYYKDDETSSVIKDLLD----------------P-SVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFEN 272 (1070)
Q Consensus 210 ~~~~~~~l~~~~~~~e~~~~i~~~~~----------------~-~~~~~~a~~~~~~~~~~~~~y~~a~~~~~~~~~fE~ 272 (1070)
-++.+..+..+-..+..... . .+. .+.... +....+....+..-+
T Consensus 161 ------~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~----------~~~~~d~~ee~~~k~- 222 (539)
T KOG0548|consen 161 ------SLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPC-KQEHNG----------FPIIEDNTEERRVKE- 222 (539)
T ss_pred ------hhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcc-cccCCC----------CCccchhHHHHHHHH-
Confidence 00001111000000000000 0 000 000000 000000000000000
Q ss_pred hhcccCCCCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHH
Q 001486 273 LIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQI 352 (1070)
Q Consensus 273 ai~~~~~~~~~~~p~~~~~W~~yi~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~ 352 (1070)
.......++.-..+..+++.++..|..++... .......+.+-.+...|.+.+++...++|++.
T Consensus 223 ---------------~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~ 286 (539)
T KOG0548|consen 223 ---------------KAHKEKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEV 286 (539)
T ss_pred ---------------hhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHH
Confidence 01123334444445667899999999999998 88888899999999999999999998888875
Q ss_pred Hhhhch---HHHHH---HHHHHHHhCCHHHHHHHHHHHhhccC-------------------------hhhHHHHHHHHH
Q 001486 353 FLKRLP---VIHLF---NARYKEQIGDTSAARAAFPESYIDSD-------------------------SRFIEKVTFKAN 401 (1070)
Q Consensus 353 ~~~~~p---~i~~~---~a~~e~~~g~~~eA~~~~~~al~~~~-------------------------p~~~~~w~~~a~ 401 (1070)
-..... .|-.. .+......++++.|+..|.+++.+.. |....--...++
T Consensus 287 gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGn 366 (539)
T KOG0548|consen 287 GRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGN 366 (539)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHH
Confidence 211000 11111 22244556788899999998874321 111111222344
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHc
Q 001486 402 MERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLLLEELIKFTMVH 481 (1070)
Q Consensus 402 le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~g~~e~Ar~iyekaL~~~P~~~~lw~~y~~~e~~~ 481 (1070)
-..+.|++..|+..|.+||+. +|.++.+|-+.|.++. .+|.+..|.+-.+++++++|+....|..-+..+...
T Consensus 367 e~Fk~gdy~~Av~~YteAIkr------~P~Da~lYsNRAac~~-kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~m 439 (539)
T KOG0548|consen 367 EAFKKGDYPEAVKHYTEAIKR------DPEDARLYSNRAACYL-KLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAM 439 (539)
T ss_pred HHHhccCHHHHHHHHHHHHhc------CCchhHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH
Confidence 445568999999999999998 7999999999999998 999999999999999999999988887766555444
Q ss_pred CCCcchhHHHHHHHHHhccCC
Q 001486 482 GGRSHISIVDAVISNALYSRP 502 (1070)
Q Consensus 482 g~~~~~~~ar~l~ekAl~~~~ 502 (1070)
.++++ +...|.+++...|
T Consensus 440 k~ydk---Aleay~eale~dp 457 (539)
T KOG0548|consen 440 KEYDK---ALEAYQEALELDP 457 (539)
T ss_pred HHHHH---HHHHHHHHHhcCc
Confidence 44433 5588889986543
No 86
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.19 E-value=2.3e-07 Score=107.15 Aligned_cols=388 Identities=11% Similarity=0.113 Sum_probs=236.9
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc
Q 001486 24 QGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSA 103 (1070)
Q Consensus 24 ~~le~~l~~nP~s~~~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P~s~~lW~~ya~~e~~~~~~e~A~~lferAL~~~ 103 (1070)
+..+.+++.++.|--+|.-++-+.+.. .++++|++.|+.||+..|++..+|..++-+-...++++-....-.+-|...
T Consensus 62 ~~vr~glr~d~~S~vCwHv~gl~~R~d--K~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~ 139 (700)
T KOG1156|consen 62 ELVRLGLRNDLKSHVCWHVLGLLQRSD--KKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR 139 (700)
T ss_pred HHHHHHhccCcccchhHHHHHHHHhhh--hhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh
Confidence 367788999999999999999988887 899999999999999999999999999999888889998888888999999
Q ss_pred CCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHcCCCCC----ch----------------------------------
Q 001486 104 TYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYL----CH---------------------------------- 145 (1070)
Q Consensus 104 P~s~~lW~~y~~~~~~~~~~~~~ar~vferAL~~~p~~~~----s~---------------------------------- 145 (1070)
|..-.-|+.|+.-.... |++..|..+.+........... .+
T Consensus 140 ~~~ra~w~~~Avs~~L~-g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dk 218 (700)
T KOG1156|consen 140 PSQRASWIGFAVAQHLL-GEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDK 218 (700)
T ss_pred hhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHH
Confidence 99999999998776666 7777777777766655421110 00
Q ss_pred -HHHHHHHHHHHHcccHHHHHHHHHHHHccCCcCHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHhhcCCccc-----
Q 001486 146 -TMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPA----- 219 (1070)
Q Consensus 146 -~lW~~yi~fe~~~~~~~~a~~iy~raL~~p~~~~~~~~~~~~~~~~~~~eal~~~~~~~~~~~~~~~~~~~l~~----- 219 (1070)
.+-..-.+++...++.++|..+|++.+.-.++ ...++..+....+.+...+.+.+ .....+.+.......+.
T Consensus 219 la~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPd-n~~Yy~~l~~~lgk~~d~~~~lk-~ly~~ls~~y~r~e~p~Rlpls 296 (700)
T KOG1156|consen 219 LAFEETKADLLMKLGQLEEAVKVYRRLLERNPD-NLDYYEGLEKALGKIKDMLEALK-ALYAILSEKYPRHECPRRLPLS 296 (700)
T ss_pred HHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCch-hHHHHHHHHHHHHHHhhhHHHHH-HHHHHHhhcCcccccchhccHH
Confidence 01111112333456788899999988753222 34455555554432111111000 00000000000000000
Q ss_pred cccchhhhHHHhhhcCcchhHHHHHHHHHHHHHHHHHHHHHH--HH-HHHHHHHHHhhcc----cCCCCCCCChHHHHHH
Q 001486 220 YYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEAS--QL-DEKINCFENLIRR----PYFHVKPLDDIQLKNW 292 (1070)
Q Consensus 220 ~~~~~e~~~~i~~~~~~~~~~~~a~~~~~~~~~~~~~y~~a~--~~-~~~~~~fE~ai~~----~~~~~~~~~p~~~~~W 292 (1070)
.....++...+..|+.. .+.+ -+-.+.....-+|+.-. ++ .+-+..|...+.. .+.+.....|...-+|
T Consensus 297 vl~~eel~~~vdkyL~~--~l~K--g~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllW 372 (700)
T KOG1156|consen 297 VLNGEELKEIVDKYLRP--LLSK--GVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLW 372 (700)
T ss_pred HhCcchhHHHHHHHHHH--Hhhc--CCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHH
Confidence 00111221111111110 0000 00000000111122111 01 1112233333321 1122222445566788
Q ss_pred HHHH--HHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhhhchHHHH--HHHHHH
Q 001486 293 HDYL--SFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHL--FNARYK 368 (1070)
Q Consensus 293 ~~yi--~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~--~~a~~e 368 (1070)
..|- ..+...|+++.|....+.|+..+|...++++.-|+.+...|.+++|..++++|.++ +.++.++ ..|.+.
T Consensus 373 t~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~el---D~aDR~INsKcAKYm 449 (700)
T KOG1156|consen 373 TLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQEL---DTADRAINSKCAKYM 449 (700)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc---cchhHHHHHHHHHHH
Confidence 8774 45567899999999999999999999999999999999999999999999999987 3444333 478899
Q ss_pred HHhCCHHHHHHHHHHHhhccCh------hhHHHHHHH--HHHHHHcCCHHHHHHHHHHHHHHH
Q 001486 369 EQIGDTSAARAAFPESYIDSDS------RFIEKVTFK--ANMERRLGNFVAACDTYKEALETA 423 (1070)
Q Consensus 369 ~~~g~~~eA~~~~~~al~~~~p------~~~~~w~~~--a~le~~~g~~~~A~~vyekal~~~ 423 (1070)
.+.+++++|.++..+-.++-.. +.--+|+.. |..+.+.|.+..|.+=|...-+.+
T Consensus 450 LrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~~ 512 (700)
T KOG1156|consen 450 LRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEKHY 512 (700)
T ss_pred HHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHHH
Confidence 9999999999988776532211 112246543 445666677766666555544443
No 87
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.18 E-value=9.8e-10 Score=125.19 Aligned_cols=250 Identities=16% Similarity=0.079 Sum_probs=181.1
Q ss_pred HHHHHHHHHHhhcccCCCCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhCChhHH
Q 001486 263 LDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIA 342 (1070)
Q Consensus 263 ~~~~~~~fE~ai~~~~~~~~~~~p~~~~~W~~yi~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A 342 (1070)
+-.+...||.+++ .+|.++++|..++.....+++--.|+.+++|||+.+|++-++...+|..|...|.-..|
T Consensus 301 L~~A~LafEAAVk--------qdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 301 LSEAALAFEAAVK--------QDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred chHHHHHHHHHHh--------hChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHH
Confidence 4456678888876 58999999999999888888888999999999999999999999999999998888889
Q ss_pred HHHHHHHHHHHhhhchHHHHHHHHHHHHh---------CCHHHHHHHHHHHhhccCh--hhHHHHHHHHHHHHHcCCHHH
Q 001486 343 SYALDRATQIFLKRLPVIHLFNARYKEQI---------GDTSAARAAFPESYIDSDS--RFIEKVTFKANMERRLGNFVA 411 (1070)
Q Consensus 343 ~~il~rAl~~~~~~~p~i~~~~a~~e~~~---------g~~~eA~~~~~~al~~~~p--~~~~~w~~~a~le~~~g~~~~ 411 (1070)
...|++=++.. -+.+|+..+.-...- ..+....++|..+. ...+ ..+++...++.++...|+|++
T Consensus 373 l~~L~~Wi~~~---p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa-~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 373 LKMLDKWIRNK---PKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAA-RQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHhC---ccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHH-HhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 88888877651 122333322111111 11223344554443 2233 567888999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCCcchhHHH
Q 001486 412 ACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLLLEELIKFTMVHGGRSHISIVD 491 (1070)
Q Consensus 412 A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~g~~e~Ar~iyekaL~~~P~~~~lw~~y~~~e~~~g~~~~~~~ar 491 (1070)
|++||+.||.. .|.+..+|..+|-.+. -.++.++|+..|.+||++.|..+.+|..++---+..|.+++ |.
T Consensus 449 aiDcf~~AL~v------~Pnd~~lWNRLGAtLA-N~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykE---A~ 518 (579)
T KOG1125|consen 449 AVDCFEAALQV------KPNDYLLWNRLGATLA-NGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKE---AV 518 (579)
T ss_pred HHHHHHHHHhc------CCchHHHHHHhhHHhc-CCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHH---HH
Confidence 99999999998 7999999999999998 78889999999999999999988777766666666676655 33
Q ss_pred HHHHHHhccCCcccccCC-hhhHHHHHHHHHHHHHHhCCHHHHH
Q 001486 492 AVISNALYSRPDVLKVFS-LEDVEDISSLYLQFLDLCGTIHDIR 534 (1070)
Q Consensus 492 ~l~ekAl~~~~~~s~~l~-~~~~~~l~~~~~~~e~~~G~~~~a~ 534 (1070)
..|=.||.-.+...+... +.-.+.||...-.+....+..+.+.
T Consensus 519 ~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~ 562 (579)
T KOG1125|consen 519 KHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQ 562 (579)
T ss_pred HHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHH
Confidence 555556543322111111 1124667876665555555555443
No 88
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.15 E-value=7e-08 Score=111.47 Aligned_cols=313 Identities=10% Similarity=-0.075 Sum_probs=183.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcCCCHHH
Q 001486 33 GSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLC---YGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDV 109 (1070)
Q Consensus 33 nP~s~~~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P~s---~~lW~~ya~~e~~~~~~e~A~~lferAL~~~P~s~~l 109 (1070)
+|+..-.|..++.++... ++.+.+.+.|.++.+..|.+ .+.+...+-.....+++++|..++++++...|.+...
T Consensus 2 dp~~~~a~~~~a~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a 79 (355)
T cd05804 2 DPDFALGHAAAALLLLLG--GERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLA 79 (355)
T ss_pred CCccHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHH
Confidence 688888888888877766 77777788899988888865 4455555556677789999999999999999999877
Q ss_pred HHH---HHHHHHhhCCChhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHcccHHHHHHHHHHHHccCCcCHHHHHHHH
Q 001486 110 WFH---YCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSF 186 (1070)
Q Consensus 110 W~~---y~~~~~~~~~~~~~ar~vferAL~~~p~~~~s~~lW~~yi~fe~~~~~~~~a~~iy~raL~~p~~~~~~~~~~~ 186 (1070)
|.. ++...... +....+.++++. ..+.++.....+..........|+++.+...|++++..
T Consensus 80 ~~~~~~~~~~~~~~-~~~~~~~~~l~~---~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~------------ 143 (355)
T cd05804 80 LKLHLGAFGLGDFS-GMRDHVARVLPL---WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL------------ 143 (355)
T ss_pred HHHhHHHHHhcccc-cCchhHHHHHhc---cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------------
Confidence 763 22221111 333333333332 12222221111112222333344444444444444432
Q ss_pred HHHHHHHHHHhhhcchhhHHHHHHHhhcCCccccccchhhhHHHhhhcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001486 187 KKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEK 266 (1070)
Q Consensus 187 ~~~~~~~~eal~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~i~~~~~~~~~~~~a~~~~~~~~~~~~~y~~a~~~~~~ 266 (1070)
T Consensus 144 -------------------------------------------------------------------------------- 143 (355)
T cd05804 144 -------------------------------------------------------------------------------- 143 (355)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhhcccCCCCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC----HHHHHHHHHHHHhhCChhHH
Q 001486 267 INCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADY----PEFWMRYVDFMESKGGREIA 342 (1070)
Q Consensus 267 ~~~fE~ai~~~~~~~~~~~p~~~~~W~~yi~~~~~~g~~~~a~~~yerAL~~~p~~----~~lW~~ya~~l~~~g~~e~A 342 (1070)
+|++...+..++..+...|++++++.+|++++...|.. ...|..++.++...|++++|
T Consensus 144 ------------------~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A 205 (355)
T cd05804 144 ------------------NPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAA 205 (355)
T ss_pred ------------------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHH
Confidence 23333455556666666788888888888888765532 23577788888888888999
Q ss_pred HHHHHHHHHHHhhhch-HHHH-HH---HHHHHHhCCHHHHHHH---HHHHhhccC-hhhHHHHHHHHHHHHHcCCHHHHH
Q 001486 343 SYALDRATQIFLKRLP-VIHL-FN---ARYKEQIGDTSAARAA---FPESYIDSD-SRFIEKVTFKANMERRLGNFVAAC 413 (1070)
Q Consensus 343 ~~il~rAl~~~~~~~p-~i~~-~~---a~~e~~~g~~~eA~~~---~~~al~~~~-p~~~~~w~~~a~le~~~g~~~~A~ 413 (1070)
+.+|++++.. .+... .... .. .......|....+... ......... +.........+......|+.+.|.
T Consensus 206 ~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~ 284 (355)
T cd05804 206 LAIYDTHIAP-SAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALD 284 (355)
T ss_pred HHHHHHHhcc-ccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHH
Confidence 8888888643 11111 1111 11 1111222322222221 111111100 111222334555666778999999
Q ss_pred HHHHHHHHHHHh---hccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhh
Q 001486 414 DTYKEALETAAE---QRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKH 463 (1070)
Q Consensus 414 ~vyekal~~~~~---~~~~~~~~~l~i~~A~~~~~~~g~~e~Ar~iyekaL~~ 463 (1070)
.+++........ .........+.+..|.+++ ..|++++|+..+..++..
T Consensus 285 ~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~-~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 285 KLLAALKGRASSADDNKQPARDVGLPLAEALYAF-AEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHH-HcCCHHHHHHHHHHHHHH
Confidence 999988776432 1111123455666777777 999999999999999843
No 89
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.15 E-value=8.3e-09 Score=120.88 Aligned_cols=209 Identities=13% Similarity=0.090 Sum_probs=163.7
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--------CCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhh--
Q 001486 286 DIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIP--------CADYPEFWMRYVDFMESKGGREIASYALDRATQIFLK-- 355 (1070)
Q Consensus 286 p~~~~~W~~yi~~~~~~g~~~~a~~~yerAL~~--------~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~-- 355 (1070)
+.-...-..++.++...+++++|+.+|++||.. +|....+..++|..|.+.|++++|...+++|+++...
T Consensus 238 l~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~ 317 (508)
T KOG1840|consen 238 LVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLL 317 (508)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhh
Confidence 333445556899999999999999999999963 4556678999999999999999999999999998644
Q ss_pred -----hchHHHHHHHHHHHHhCCHHHHHHHHHHHhhcc-------ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 001486 356 -----RLPVIHLFNARYKEQIGDTSAARAAFPESYIDS-------DSRFIEKVTFKANMERRLGNFVAACDTYKEALETA 423 (1070)
Q Consensus 356 -----~~p~i~~~~a~~e~~~g~~~eA~~~~~~al~~~-------~p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~ 423 (1070)
..+......+.++...+++++|..+|.++++.. ++....+...++.++...|.+++|+++|++||...
T Consensus 318 ~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~ 397 (508)
T KOG1840|consen 318 GASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQIL 397 (508)
T ss_pred ccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 223455566677888999999999999887422 34567889999999999999999999999999987
Q ss_pred Hhhcc--CCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhh-------CCCcHHHHHHHHHHHHHcCCCcchhHHHHHH
Q 001486 424 AEQRK--FHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKH-------VPNCKLLLEELIKFTMVHGGRSHISIVDAVI 494 (1070)
Q Consensus 424 ~~~~~--~~~~~~l~i~~A~~~~~~~g~~e~Ar~iyekaL~~-------~P~~~~lw~~y~~~e~~~g~~~~~~~ar~l~ 494 (1070)
..... .......+.++|..++ +.+.+.+|.++|++++.+ .|+....+..++......|+.+.+. ++.
T Consensus 398 ~~~~~~~~~~~~~~l~~la~~~~-~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~---~~~ 473 (508)
T KOG1840|consen 398 RELLGKKDYGVGKPLNQLAEAYE-ELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAE---ELE 473 (508)
T ss_pred HhcccCcChhhhHHHHHHHHHHH-HhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHH---HHH
Confidence 54433 2334566777888876 899999999999888764 3445567788888888889887754 555
Q ss_pred HHHh
Q 001486 495 SNAL 498 (1070)
Q Consensus 495 ekAl 498 (1070)
++++
T Consensus 474 ~~~~ 477 (508)
T KOG1840|consen 474 EKVL 477 (508)
T ss_pred HHHH
Confidence 5544
No 90
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.14 E-value=9.5e-10 Score=109.42 Aligned_cols=126 Identities=17% Similarity=-0.004 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHHhhhchHHHHHHHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001486 342 ASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALE 421 (1070)
Q Consensus 342 A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~eA~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~vyekal~ 421 (1070)
-...|++|+++ +|..+...+......|++++|...|.+++ .++|....+|+.++.+....|++++|+..|+++++
T Consensus 12 ~~~~~~~al~~----~p~~~~~~g~~~~~~g~~~~A~~~~~~al-~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 12 PEDILKQLLSV----DPETVYASGYASWQEGDYSRAVIDFSWLV-MAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHHHHc----CHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 34678888887 56667777888888999999999999998 78888999999999999999999999999999999
Q ss_pred HHHhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 001486 422 TAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLLLEELIKFTM 479 (1070)
Q Consensus 422 ~~~~~~~~~~~~~l~i~~A~~~~~~~g~~e~Ar~iyekaL~~~P~~~~lw~~y~~~e~ 479 (1070)
. .|.++..|.++|.++. ..|++++|+..|+++++..|++...|........
T Consensus 87 l------~p~~~~a~~~lg~~l~-~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 87 L------DASHPEPVYQTGVCLK-MMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred c------CCCCcHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 8 7888999999999988 8999999999999999999999998866655443
No 91
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.14 E-value=1.2e-08 Score=105.59 Aligned_cols=190 Identities=17% Similarity=0.185 Sum_probs=155.8
Q ss_pred CHHHHHHHHHHHhccCC---CCHHHHHHHHH---HHHhhCChhHHHHHHHHHHHHHhhhchHHHHHHHHHHHHhCCHHHH
Q 001486 304 DFDWVVKLYERCLIPCA---DYPEFWMRYVD---FMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAA 377 (1070)
Q Consensus 304 ~~~~a~~~yerAL~~~p---~~~~lW~~ya~---~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~eA 377 (1070)
+.+++..++...+...+ .-.+.|.-|-. .....|+.+.|..++++....| |+.+.+-...|.+++..|++++|
T Consensus 27 nseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~A 105 (289)
T KOG3060|consen 27 NSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKEA 105 (289)
T ss_pred CHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhhH
Confidence 34455555555443211 22455655543 3345678899999998877774 77788999999999999999999
Q ss_pred HHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHH
Q 001486 378 RAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDIL 457 (1070)
Q Consensus 378 ~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~g~~e~Ar~iy 457 (1070)
.++|++.+ +-+|.+.-++-+...+.+..|..-+|++.+.+-++. ++.+.++|..+|.+|. ..|++++|.=+|
T Consensus 106 ~e~y~~lL-~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~------F~~D~EAW~eLaeiY~-~~~~f~kA~fCl 177 (289)
T KOG3060|consen 106 IEYYESLL-EDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK------FMNDQEAWHELAEIYL-SEGDFEKAAFCL 177 (289)
T ss_pred HHHHHHHh-ccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH------hcCcHHHHHHHHHHHH-hHhHHHHHHHHH
Confidence 99999999 556766667777777888889888999999999998 5899999999999998 999999999999
Q ss_pred HHHHhhCCCcHHHHHHHHHHHHHcCCCcchhHHHHHHHHHhccCC
Q 001486 458 IDGIKHVPNCKLLLEELIKFTMVHGGRSHISIVDAVISNALYSRP 502 (1070)
Q Consensus 458 ekaL~~~P~~~~lw~~y~~~e~~~g~~~~~~~ar~l~ekAl~~~~ 502 (1070)
|..+-..|.++.++..|+++....|..++.+.+|..|++|++.++
T Consensus 178 EE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 178 EELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred HHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 999999999999999999999999999999999999999997443
No 92
>PLN02789 farnesyltranstransferase
Probab=99.13 E-value=9.5e-09 Score=115.44 Aligned_cols=188 Identities=11% Similarity=0.016 Sum_probs=159.8
Q ss_pred CChHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhCCh--hHHHHHHHHHHHHHhhhchHH
Q 001486 284 LDDIQLKNWHDYLSFAEKQG-DFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGR--EIASYALDRATQIFLKRLPVI 360 (1070)
Q Consensus 284 ~~p~~~~~W~~yi~~~~~~g-~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~--e~A~~il~rAl~~~~~~~p~i 360 (1070)
++|.+..+|...+..+...| ++++++..+++++..+|++..+|...+.++...|.. +++...+++++.. .+++-.+
T Consensus 66 lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~-dpkNy~A 144 (320)
T PLN02789 66 LNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSL-DAKNYHA 144 (320)
T ss_pred HCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHh-CcccHHH
Confidence 68999999999999888888 579999999999999999999999999888888863 6788999999987 6667789
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHc---CCH----HHHHHHHHHHHHHHHhhccCCCcH
Q 001486 361 HLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRL---GNF----VAACDTYKEALETAAEQRKFHTLP 433 (1070)
Q Consensus 361 ~~~~a~~e~~~g~~~eA~~~~~~al~~~~p~~~~~w~~~a~le~~~---g~~----~~A~~vyekal~~~~~~~~~~~~~ 433 (1070)
|...+.+....|++++|++.+.++| +.++.+..+|..++.+.... |++ +++...+.++|.. .|.+.
T Consensus 145 W~~R~w~l~~l~~~~eeL~~~~~~I-~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~------~P~N~ 217 (320)
T PLN02789 145 WSHRQWVLRTLGGWEDELEYCHQLL-EEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILA------NPRNE 217 (320)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHH-HHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHh------CCCCc
Confidence 9999999999999999999999999 77888899999988776655 333 5678888899998 68889
Q ss_pred HHHHHHHHHHHhh----cCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 001486 434 LLYVQFSRLTYTT----TGSADNARDILIDGIKHVPNCKLLLEELIKFTMV 480 (1070)
Q Consensus 434 ~l~i~~A~~~~~~----~g~~e~Ar~iyekaL~~~P~~~~lw~~y~~~e~~ 480 (1070)
.+|..++.++. . .+...+|..++.+++...|.+..+...++++...
T Consensus 218 SaW~Yl~~ll~-~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 218 SPWRYLRGLFK-DDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred CHHHHHHHHHh-cCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 99999998886 4 3455679999999999899888777777766653
No 93
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.11 E-value=1.7e-08 Score=107.06 Aligned_cols=233 Identities=13% Similarity=0.037 Sum_probs=188.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhhhchHHHHHHHHHHHHhCCH
Q 001486 295 YLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDT 374 (1070)
Q Consensus 295 yi~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~ 374 (1070)
++.++...|-+.+|..-+..+|+..|.. +-++.+++.|.+.+..+.|..+|...+.. .|.+-...+..|++.+..++.
T Consensus 229 ~gkCylrLgm~r~AekqlqssL~q~~~~-dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam~~~ 306 (478)
T KOG1129|consen 229 MGKCYLRLGMPRRAEKQLQSSLTQFPHP-DTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAMEQQ 306 (478)
T ss_pred HHHHHHHhcChhhhHHHHHHHhhcCCch-hHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHHHhH
Confidence 5788889999999999999999887654 66677899999999999999999999987 344445777788999999999
Q ss_pred HHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhcCCHHHHH
Q 001486 375 SAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNAR 454 (1070)
Q Consensus 375 ~eA~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~g~~e~Ar 454 (1070)
++|.++|++++ +.++.+++..--.+.-+.--++.+.|...|++.|.. ....++++.++|.|.. -.+.+|-+.
T Consensus 307 ~~a~~lYk~vl-k~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm------G~~speLf~NigLCC~-yaqQ~D~~L 378 (478)
T KOG1129|consen 307 EDALQLYKLVL-KLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQM------GAQSPELFCNIGLCCL-YAQQIDLVL 378 (478)
T ss_pred HHHHHHHHHHH-hcCCccceeeeeeeeccccCCChHHHHHHHHHHHHh------cCCChHHHhhHHHHHH-hhcchhhhH
Confidence 99999999999 566666554322222222348899999999999998 6788999999999987 889999999
Q ss_pred HHHHHHHhhC--CC-cHHHHHHHHHHHHHcCCCcchhHHHHHHHHHhccCCcccccCChhhHHHHHHHHHHHHHHhCCHH
Q 001486 455 DILIDGIKHV--PN-CKLLLEELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTIH 531 (1070)
Q Consensus 455 ~iyekaL~~~--P~-~~~lw~~y~~~e~~~g~~~~~~~ar~l~ekAl~~~~~~s~~l~~~~~~~l~~~~~~~e~~~G~~~ 531 (1070)
..|++|+... |+ ..++|.+........||..- +...|.-||...+ +..+.+ .-..-++.+-|+++
T Consensus 379 ~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nl---A~rcfrlaL~~d~--------~h~eal-nNLavL~~r~G~i~ 446 (478)
T KOG1129|consen 379 PSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNL---AKRCFRLALTSDA--------QHGEAL-NNLAVLAARSGDIL 446 (478)
T ss_pred HHHHHHHhhccCcchhhhhhhccceeEEeccchHH---HHHHHHHHhccCc--------chHHHH-HhHHHHHhhcCchH
Confidence 9999999863 44 45899999888888888765 4588998986433 444444 34456778899999
Q ss_pred HHHHHHHHHHHhCCCCcc
Q 001486 532 DIRNAWNQHIKLFPHTVR 549 (1070)
Q Consensus 532 ~a~~~~~ra~~~~p~~~~ 549 (1070)
.|+.+|.-+....|+-..
T Consensus 447 ~Arsll~~A~s~~P~m~E 464 (478)
T KOG1129|consen 447 GARSLLNAAKSVMPDMAE 464 (478)
T ss_pred HHHHHHHHhhhhCccccc
Confidence 999999999999998443
No 94
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.11 E-value=2e-09 Score=114.09 Aligned_cols=278 Identities=15% Similarity=0.160 Sum_probs=197.6
Q ss_pred HHHHHHHhCCC-------CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHC---C----CCH--HHHHH-HHHHHHHhC
Q 001486 25 GLEEFIAEGSL-------DFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEF---P----LCY--GYWRK-YADHKARLC 87 (1070)
Q Consensus 25 ~le~~l~~nP~-------s~~~W~~li~~~~~~~~~~~~~a~~vyeraL~~~---P----~s~--~lW~~-ya~~e~~~~ 87 (1070)
.|-..-+.||+ -+++.+.|+-+.+ +|+.+|.......++.. | ..+ ..|+. .++-+.+++
T Consensus 162 ~f~nlsRLN~tkYa~~p~l~kaLFey~fyhe----nDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLg 237 (478)
T KOG1129|consen 162 KFYNLSRLNPTKYAERPTLVKALFEYLFYHE----NDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLG 237 (478)
T ss_pred ceeehhhcCchhhccChHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhc
Confidence 44445555553 3455555555545 57777764443333211 1 111 23433 445678889
Q ss_pred CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHcccHHHHHHH
Q 001486 88 SIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQI 167 (1070)
Q Consensus 88 ~~e~A~~lferAL~~~P~s~~lW~~y~~~~~~~~~~~~~ar~vferAL~~~p~~~~s~~lW~~yi~fe~~~~~~~~a~~i 167 (1070)
-+.+|.+-|..+|+..| .++-++.+.+.+.+. +....|..+|...|+..|.+. .+-...++..+..++.+.+.++
T Consensus 238 m~r~AekqlqssL~q~~-~~dTfllLskvY~ri-dQP~~AL~~~~~gld~fP~~V---T~l~g~ARi~eam~~~~~a~~l 312 (478)
T KOG1129|consen 238 MPRRAEKQLQSSLTQFP-HPDTFLLLSKVYQRI-DQPERALLVIGEGLDSFPFDV---TYLLGQARIHEAMEQQEDALQL 312 (478)
T ss_pred ChhhhHHHHHHHhhcCC-chhHHHHHHHHHHHh-ccHHHHHHHHhhhhhcCCchh---hhhhhhHHHHHHHHhHHHHHHH
Confidence 99999999999999975 788888889998888 889999999999999988753 3444445555666777888888
Q ss_pred HHHHHccCCcCHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHhhcCCccccccchhhhHHHhhhcCcchhHHHHHHHH
Q 001486 168 FVQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQ 247 (1070)
Q Consensus 168 y~raL~~p~~~~~~~~~~~~~~~~~~~eal~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~i~~~~~~~~~~~~a~~~~ 247 (1070)
|+++++....+.+ +|+|
T Consensus 313 Yk~vlk~~~~nvE---------------aiAc------------------------------------------------ 329 (478)
T KOG1129|consen 313 YKLVLKLHPINVE---------------AIAC------------------------------------------------ 329 (478)
T ss_pred HHHHHhcCCccce---------------eeee------------------------------------------------
Confidence 8888774322110 1111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHH
Q 001486 248 KYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWM 327 (1070)
Q Consensus 248 ~~~~~~~~~y~~a~~~~~~~~~fE~ai~~~~~~~~~~~p~~~~~W~~yi~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~ 327 (1070)
|...| |+ .++++.|...|+|.|..-..++++++
T Consensus 330 --------------------------ia~~y-------------------fY--~~~PE~AlryYRRiLqmG~~speLf~ 362 (478)
T KOG1129|consen 330 --------------------------IAVGY-------------------FY--DNNPEMALRYYRRILQMGAQSPELFC 362 (478)
T ss_pred --------------------------eeecc-------------------cc--CCChHHHHHHHHHHHHhcCCChHHHh
Confidence 00001 11 35677788888888888888888998
Q ss_pred HHHHHHHhhCChhHHHHHHHHHHHHHh-hh-chHHHHHHHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHH
Q 001486 328 RYVDFMESKGGREIASYALDRATQIFL-KR-LPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERR 405 (1070)
Q Consensus 328 ~ya~~l~~~g~~e~A~~il~rAl~~~~-~~-~p~i~~~~a~~e~~~g~~~eA~~~~~~al~~~~p~~~~~w~~~a~le~~ 405 (1070)
+++.+..-.+.+|-+...|.||+..-. ++ ..++|+..+......|++.-|...|+-++ ..++++.+.+.+++.++.+
T Consensus 363 NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL-~~d~~h~ealnNLavL~~r 441 (478)
T KOG1129|consen 363 NIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLAL-TSDAQHGEALNNLAVLAAR 441 (478)
T ss_pred hHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHh-ccCcchHHHHHhHHHHHhh
Confidence 888888888888999999999887632 21 23688888888888899998999998888 6778888889999999989
Q ss_pred cCCHHHHHHHHHHHHHH
Q 001486 406 LGNFVAACDTYKEALET 422 (1070)
Q Consensus 406 ~g~~~~A~~vyekal~~ 422 (1070)
.|+++.|+.+|..|-..
T Consensus 442 ~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 442 SGDILGARSLLNAAKSV 458 (478)
T ss_pred cCchHHHHHHHHHhhhh
Confidence 99999999999888776
No 95
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.10 E-value=1.2e-06 Score=100.49 Aligned_cols=407 Identities=12% Similarity=0.070 Sum_probs=232.8
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcCC-CHHHHHHHHHH
Q 001486 38 DEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATY-SVDVWFHYCSL 116 (1070)
Q Consensus 38 ~~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P~s~~lW~~ya~~e~~~~~~e~A~~lferAL~~~P~-s~~lW~~y~~~ 116 (1070)
.+|..+-.+.. . +++++|.+...+.|...|++....+.-+--.+..+.|++|.++.++-....-. +.-+-..||.|
T Consensus 14 ~l~t~ln~~~~-~--~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Y 90 (652)
T KOG2376|consen 14 ALLTDLNRHGK-N--GEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEY 90 (652)
T ss_pred HHHHHHHHhcc-c--hHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHH
Confidence 56665555433 3 89999999999999999999988877777778888899998777654432212 22266788877
Q ss_pred HHhhCCChhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHcccHHHHHHHHHHHHccCCcCHHHHHHHHHHHHHHHHHH
Q 001486 117 SMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAGAWKEE 196 (1070)
Q Consensus 117 ~~~~~~~~~~ar~vferAL~~~p~~~~s~~lW~~yi~fe~~~~~~~~a~~iy~raL~~p~~~~~~~~~~~~~~~~~~~ea 196 (1070)
-+ +..++|.+.++ |.+.....+-..++...-+.++++++.+||+..++....+.+.... ..+.
T Consensus 91 rl---nk~Dealk~~~------~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r------~nl~-- 153 (652)
T KOG2376|consen 91 RL---NKLDEALKTLK------GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERR------ANLL-- 153 (652)
T ss_pred Hc---ccHHHHHHHHh------cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHH------HHHH--
Confidence 43 66788888877 2333334577788888888999999999999888754332211000 0000
Q ss_pred hhhcchhhHHHHHHHhhcCCccccccchhhhHHHhhhcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 001486 197 LECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRR 276 (1070)
Q Consensus 197 l~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~i~~~~~~~~~~~~a~~~~~~~~~~~~~y~~a~~~~~~~~~fE~ai~~ 276 (1070)
++. . +..+ . ....+
T Consensus 154 --------------a~~------------------------------a---------------~l~~----~-~~q~v-- 167 (652)
T KOG2376|consen 154 --------------AVA------------------------------A---------------ALQV----Q-LLQSV-- 167 (652)
T ss_pred --------------HHH------------------------------H---------------hhhH----H-HHHhc--
Confidence 000 0 0000 0 00000
Q ss_pred cCCCCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC--------CC-------CHHHHHHHHHHHHhhCChhH
Q 001486 277 PYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPC--------AD-------YPEFWMRYVDFMESKGGREI 341 (1070)
Q Consensus 277 ~~~~~~~~~p~~~~~W~~yi~~~~~~g~~~~a~~~yerAL~~~--------p~-------~~~lW~~ya~~l~~~g~~e~ 341 (1070)
.....+..+..++.+..+...|+++.|++++++|+..| .. -..+.+.++.++-..|+.++
T Consensus 168 -----~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~e 242 (652)
T KOG2376|consen 168 -----PEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAE 242 (652)
T ss_pred -----cCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHH
Confidence 01112345666777777778899999999999985432 11 12457778888888999999
Q ss_pred HHHHHHHHHHHHhhhchHHHHH----------------------------HHHH--------------------HHHhCC
Q 001486 342 ASYALDRATQIFLKRLPVIHLF----------------------------NARY--------------------KEQIGD 373 (1070)
Q Consensus 342 A~~il~rAl~~~~~~~p~i~~~----------------------------~a~~--------------------e~~~g~ 373 (1070)
|..+|...+.....+.|..-.. ++.+ ..-.+.
T Consensus 243 a~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk 322 (652)
T KOG2376|consen 243 ASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNK 322 (652)
T ss_pred HHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999988887532222210000 0000 000011
Q ss_pred HHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCc-HHHHHHHHHHHHhhcCCHHH
Q 001486 374 TSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTL-PLLYVQFSRLTYTTTGSADN 452 (1070)
Q Consensus 374 ~~eA~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~-~~l~i~~A~~~~~~~g~~e~ 452 (1070)
-+.++++..+.-.........+.+.-+..-++ ..+..|..++..+.+. .+.. ..+.+..+.+.. ..|+++.
T Consensus 323 ~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~-~~~~ka~e~L~~~~~~------~p~~s~~v~L~~aQl~i-s~gn~~~ 394 (652)
T KOG2376|consen 323 MDQVRELSASLPGMSPESLFPILLQEATKVRE-KKHKKAIELLLQFADG------HPEKSKVVLLLRAQLKI-SQGNPEV 394 (652)
T ss_pred HHHHHHHHHhCCccCchHHHHHHHHHHHHHHH-HHHhhhHHHHHHHhcc------CCchhHHHHHHHHHHHH-hcCCHHH
Confidence 11111111110000000111122221111111 1244444444444443 3333 345666677776 8999999
Q ss_pred HHHHHHHHHhhCC-------CcHHHHHHHHHHHHHcCCCcchhHHHHHHHHHhccCCcccccCC-hhhHHHHHHHHHHHH
Q 001486 453 ARDILIDGIKHVP-------NCKLLLEELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFS-LEDVEDISSLYLQFL 524 (1070)
Q Consensus 453 Ar~iyekaL~~~P-------~~~~lw~~y~~~e~~~g~~~~~~~ar~l~ekAl~~~~~~s~~l~-~~~~~~l~~~~~~~e 524 (1070)
|..++...+..+- +.+.+.-....+..+.++... +.+++..|+.--.. .++ ...-..+|...+.|+
T Consensus 395 A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~---a~~vl~~Ai~~~~~---~~t~s~~l~~~~~~aa~f~ 468 (652)
T KOG2376|consen 395 ALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDS---ASAVLDSAIKWWRK---QQTGSIALLSLMREAAEFK 468 (652)
T ss_pred HHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCcc---HHHHHHHHHHHHHH---hcccchHHHhHHHHHhHHH
Confidence 9999995543222 223333322333333344333 45888888753110 111 123346788889999
Q ss_pred HHhCCHHHHHHHHHHHHHhCCCCcc
Q 001486 525 DLCGTIHDIRNAWNQHIKLFPHTVR 549 (1070)
Q Consensus 525 ~~~G~~~~a~~~~~ra~~~~p~~~~ 549 (1070)
.++|+.+++..+++...+..|.+..
T Consensus 469 lr~G~~~ea~s~leel~k~n~~d~~ 493 (652)
T KOG2376|consen 469 LRHGNEEEASSLLEELVKFNPNDTD 493 (652)
T ss_pred HhcCchHHHHHHHHHHHHhCCchHH
Confidence 9999999999999999999988655
No 96
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.10 E-value=5.7e-09 Score=113.17 Aligned_cols=177 Identities=16% Similarity=0.103 Sum_probs=121.7
Q ss_pred CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCH---HHHHHHHHHHHhhCChhHHHHHHHHHHHHHhhhchH
Q 001486 283 PLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYP---EFWMRYVDFMESKGGREIASYALDRATQIFLKRLPV 359 (1070)
Q Consensus 283 ~~~p~~~~~W~~yi~~~~~~g~~~~a~~~yerAL~~~p~~~---~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~ 359 (1070)
+.++.....++..+..+...|+++.|+..|++++...|.+. ..|+.+|..+...|++++|+..|+++++. .|+.+.
T Consensus 27 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~-~p~~~~ 105 (235)
T TIGR03302 27 PVEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL-HPNHPD 105 (235)
T ss_pred CcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-CcCCCc
Confidence 35566678899999988899999999999999999888765 68899999999999999999999999997 454443
Q ss_pred ---HHHHHHHHHHHh--------CCHHHHHHHHHHHhhccChhhHHHHH-----------------HHHHHHHHcCCHHH
Q 001486 360 ---IHLFNARYKEQI--------GDTSAARAAFPESYIDSDSRFIEKVT-----------------FKANMERRLGNFVA 411 (1070)
Q Consensus 360 ---i~~~~a~~e~~~--------g~~~eA~~~~~~al~~~~p~~~~~w~-----------------~~a~le~~~g~~~~ 411 (1070)
.++..+...... |++++|++.|.+++ ...|++...+. ..+.++.+.|++.+
T Consensus 106 ~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~-~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~ 184 (235)
T TIGR03302 106 ADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELI-RRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVA 184 (235)
T ss_pred hHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHH-HHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHH
Confidence 566666665544 77899999999998 55565543332 23344444555555
Q ss_pred HHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCC
Q 001486 412 ACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVP 465 (1070)
Q Consensus 412 A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~g~~e~Ar~iyekaL~~~P 465 (1070)
|+..|+++++.++. .+..+.+|..+|.++. ..|++++|.++++.....+|
T Consensus 185 A~~~~~~al~~~p~---~~~~~~a~~~l~~~~~-~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 185 AINRFETVVENYPD---TPATEEALARLVEAYL-KLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHHCCC---CcchHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCC
Confidence 55555555554211 1223455555555554 55555555555555544444
No 97
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=99.10 E-value=2.9e-09 Score=120.42 Aligned_cols=150 Identities=15% Similarity=0.206 Sum_probs=127.1
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhcCC----------CcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHH
Q 001486 24 QGLEEFIAEGSLDFDEWTSLLSEIENSCP----------DDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVV 93 (1070)
Q Consensus 24 ~~le~~l~~nP~s~~~W~~li~~~~~~~~----------~~~~~a~~vyeraL~~~P~s~~lW~~ya~~e~~~~~~e~A~ 93 (1070)
..|.+.|+.||.|+++|+.|+++-..... .-.++...+|+|||+.+|++..+|+.|++...+..+.+++.
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 47999999999999999999997654311 12467789999999999999999999999999988999999
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhhC--CChhHHHHHHHHHHHHcCCCCC---------------chHHHHHHHHHHH
Q 001486 94 EVFERAVQSATYSVDVWFHYCSLSMSTF--EDPNDVRRLFKRALSFVGKDYL---------------CHTMWDKYIEFEI 156 (1070)
Q Consensus 94 ~lferAL~~~P~s~~lW~~y~~~~~~~~--~~~~~ar~vferAL~~~p~~~~---------------s~~lW~~yi~fe~ 156 (1070)
..++++|..+|.++.||..|++|..... -.++.++.+|.++|+.+..... ...|...++.|+.
T Consensus 86 ~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~ 165 (321)
T PF08424_consen 86 KKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLR 165 (321)
T ss_pred HHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998854 3688999999999997733211 2366677788888
Q ss_pred HcccHHHHHHHHHHHHc
Q 001486 157 SQQRWSSLAQIFVQTLR 173 (1070)
Q Consensus 157 ~~~~~~~a~~iy~raL~ 173 (1070)
..|..+.|..+++-.+.
T Consensus 166 ~aG~~E~Ava~~Qa~lE 182 (321)
T PF08424_consen 166 QAGYTERAVALWQALLE 182 (321)
T ss_pred HCCchHHHHHHHHHHHH
Confidence 89999999999988765
No 98
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.09 E-value=3.2e-07 Score=108.97 Aligned_cols=311 Identities=14% Similarity=0.142 Sum_probs=197.3
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhC--
Q 001486 44 LSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTF-- 121 (1070)
Q Consensus 44 i~~~~~~~~~~~~~a~~vyeraL~~~P~s~~lW~~ya~~e~~~~~~e~A~~lferAL~~~P~s~~lW~~y~~~~~~~~-- 121 (1070)
+.++... |++++|...++..-+.+.+...+...-++++.++|++++|..+|...|..+|.+.+....|...+....
T Consensus 11 ~~il~e~--g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 11 NSILEEA--GDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHHC--CCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhccc
Confidence 4445555 899999999999999999999999999999999999999999999999999999998888887762220
Q ss_pred --CChhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHcccHHHHHHHHHHHHccCCcCHHHHHHHHHHHHHHHHHHhhh
Q 001486 122 --EDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAGAWKEELEC 199 (1070)
Q Consensus 122 --~~~~~ar~vferAL~~~p~~~~s~~lW~~yi~fe~~~~~~~~a~~iy~raL~~p~~~~~~~~~~~~~~~~~~~eal~~ 199 (1070)
.+.+....+|+......|... .+=..-+.|.. | +.|+...+.+
T Consensus 89 ~~~~~~~~~~~y~~l~~~yp~s~---~~~rl~L~~~~--g------------------------~~F~~~~~~y------ 133 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKYPRSD---APRRLPLDFLE--G------------------------DEFKERLDEY------ 133 (517)
T ss_pred ccccHHHHHHHHHHHHHhCcccc---chhHhhcccCC--H------------------------HHHHHHHHHH------
Confidence 245566677776655555421 11001111111 0 1111111110
Q ss_pred cchhhHHHHHHHhhcCCccccccchhhhHHHhhhcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-C
Q 001486 200 ESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRP-Y 278 (1070)
Q Consensus 200 ~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~i~~~~~~~~~~~~a~~~~~~~~~~~~~y~~a~~~~~~~~~fE~ai~~~-~ 278 (1070)
+...+ ...++.-+.+ ++.+..+. .+...+ ...+..|...++.. .
T Consensus 134 --------l~~~l-~KgvPslF~~------lk~Ly~d~---~K~~~i-----------------~~l~~~~~~~l~~~~~ 178 (517)
T PF12569_consen 134 --------LRPQL-RKGVPSLFSN------LKPLYKDP---EKAAII-----------------ESLVEEYVNSLESNGS 178 (517)
T ss_pred --------HHHHH-hcCCchHHHH------HHHHHcCh---hHHHHH-----------------HHHHHHHHHhhcccCC
Confidence 00000 0011100000 00000000 000000 00111111122110 0
Q ss_pred CCC---CCCChHHHHHHHHH--HHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHH
Q 001486 279 FHV---KPLDDIQLKNWHDY--LSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIF 353 (1070)
Q Consensus 279 ~~~---~~~~p~~~~~W~~y--i~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~ 353 (1070)
+.. ....+...-+|..| +..+...|++++|..+.++||...|...++++.-|+++...|++.+|...++.|..+
T Consensus 179 ~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~L- 257 (517)
T PF12569_consen 179 FSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEAREL- 257 (517)
T ss_pred CCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhC-
Confidence 110 11234445567555 678888999999999999999999999999999999999999999999999999987
Q ss_pred hhhchHHHHHHHHHHHHhCCHHHHHHHHHHHhhcc-Ch-----hhHHHHHH--HHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 001486 354 LKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDS-DS-----RFIEKVTF--KANMERRLGNFVAACDTYKEALETAAE 425 (1070)
Q Consensus 354 ~~~~p~i~~~~a~~e~~~g~~~eA~~~~~~al~~~-~p-----~~~~~w~~--~a~le~~~g~~~~A~~vyekal~~~~~ 425 (1070)
...+--+-...+.+..+.|++++|.+++..-++.- ++ +.--+|+. .|..+.+.|++..|.+-|..+.+.+..
T Consensus 258 D~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~ 337 (517)
T PF12569_consen 258 DLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDD 337 (517)
T ss_pred ChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 22222355556788999999999999887765322 12 11234654 566788899999999999999998764
Q ss_pred hc
Q 001486 426 QR 427 (1070)
Q Consensus 426 ~~ 427 (1070)
..
T Consensus 338 ~~ 339 (517)
T PF12569_consen 338 FE 339 (517)
T ss_pred Hh
Confidence 43
No 99
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.08 E-value=2.5e-06 Score=91.29 Aligned_cols=180 Identities=15% Similarity=0.185 Sum_probs=140.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC-----HHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhhhchHHHHHHH
Q 001486 291 NWHDYLSFAEKQGDFDWVVKLYERCLIPCADY-----PEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNA 365 (1070)
Q Consensus 291 ~W~~yi~~~~~~g~~~~a~~~yerAL~~~p~~-----~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a 365 (1070)
+...++.++....+..+|+++-++.++..+.. ..+++++|.-+.-..+++.|+.++.||+.. .|++..+-+..+
T Consensus 143 AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa-~~~cvRAsi~lG 221 (389)
T COG2956 143 ALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQA-DKKCVRASIILG 221 (389)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh-Cccceehhhhhh
Confidence 44555666666667777788877777665443 356888888888888899999999999998 677777888899
Q ss_pred HHHHHhCCHHHHHHHHHHHhhccChhh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHH
Q 001486 366 RYKEQIGDTSAARAAFPESYIDSDSRF-IEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTY 444 (1070)
Q Consensus 366 ~~e~~~g~~~eA~~~~~~al~~~~p~~-~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~ 444 (1070)
+++...|++..|.+.+++++ +-+|++ ..+.-.+..+|..+|..++.+.-+.++.+. .....+.+.++.+.+
T Consensus 222 ~v~~~~g~y~~AV~~~e~v~-eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~-------~~g~~~~l~l~~lie 293 (389)
T COG2956 222 RVELAKGDYQKAVEALERVL-EQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET-------NTGADAELMLADLIE 293 (389)
T ss_pred HHHHhccchHHHHHHHHHHH-HhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc-------cCCccHHHHHHHHHH
Confidence 99999999999999999998 556655 455667778899999999999999999987 334566677777776
Q ss_pred hhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHc
Q 001486 445 TTTGSADNARDILIDGIKHVPNCKLLLEELIKFTMVH 481 (1070)
Q Consensus 445 ~~~g~~e~Ar~iyekaL~~~P~~~~lw~~y~~~e~~~ 481 (1070)
.....+.|.....+-|+..|+-..++ .++++....
T Consensus 294 -~~~G~~~Aq~~l~~Ql~r~Pt~~gf~-rl~~~~l~d 328 (389)
T COG2956 294 -LQEGIDAAQAYLTRQLRRKPTMRGFH-RLMDYHLAD 328 (389)
T ss_pred -HhhChHHHHHHHHHHHhhCCcHHHHH-HHHHhhhcc
Confidence 78888999999999999999755533 355555443
No 100
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.07 E-value=3e-07 Score=98.39 Aligned_cols=296 Identities=9% Similarity=-0.008 Sum_probs=197.1
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc
Q 001486 24 QGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSA 103 (1070)
Q Consensus 24 ~~le~~l~~nP~s~~~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P~s~~lW~~ya~~e~~~~~~e~A~~lferAL~~~ 103 (1070)
.-|-.+|..||+++.+.++.+..+... |.-.-|..-+.|.|+.-|+-...-+.-+.+.++.|.++.|..-|...|...
T Consensus 59 t~yHaAve~dp~~Y~aifrRaT~yLAm--Gksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~ 136 (504)
T KOG0624|consen 59 THYHAAVEGDPNNYQAIFRRATVYLAM--GKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHE 136 (504)
T ss_pred HHHHHHHcCCchhHHHHHHHHHHHhhh--cCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcC
Confidence 467889999999999999998888877 777778899999999999999999999999999999999999999999998
Q ss_pred CCCHHHHHHHHHHH------------Hhh--CCChhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHcccHHHHHHHHH
Q 001486 104 TYSVDVWFHYCSLS------------MST--FEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFV 169 (1070)
Q Consensus 104 P~s~~lW~~y~~~~------------~~~--~~~~~~ar~vferAL~~~p~~~~s~~lW~~yi~fe~~~~~~~~a~~iy~ 169 (1070)
|.+...-..+-++. .+. .||...|+......|...+.+ ..+...-.+.....+....|+.-++
T Consensus 137 ~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wd---a~l~~~Rakc~i~~~e~k~AI~Dlk 213 (504)
T KOG0624|consen 137 PSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWD---ASLRQARAKCYIAEGEPKKAIHDLK 213 (504)
T ss_pred CCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcch---hHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 85432222221111 111 167888888888888877764 4566666777777788888877777
Q ss_pred HHHccCCcCHHHHHHH--HHHHHHHHHHHhhhcchhhHHHHHHHhhcCCccccccchhhhHHHhhhcCcchhHHHHHHHH
Q 001486 170 QTLRFPSKKLHHYYDS--FKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQ 247 (1070)
Q Consensus 170 raL~~p~~~~~~~~~~--~~~~~~~~~eal~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~i~~~~~~~~~~~~a~~~~ 247 (1070)
.+-++...+.+..|.. ..--++.....+. .|++.+...+...++-
T Consensus 214 ~askLs~DnTe~~ykis~L~Y~vgd~~~sL~------------------------------~iRECLKldpdHK~Cf--- 260 (504)
T KOG0624|consen 214 QASKLSQDNTEGHYKISQLLYTVGDAENSLK------------------------------EIRECLKLDPDHKLCF--- 260 (504)
T ss_pred HHHhccccchHHHHHHHHHHHhhhhHHHHHH------------------------------HHHHHHccCcchhhHH---
Confidence 7766666655555431 1111111111111 0111111111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHH
Q 001486 248 KYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWM 327 (1070)
Q Consensus 248 ~~~~~~~~~y~~a~~~~~~~~~fE~ai~~~~~~~~~~~p~~~~~W~~yi~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~ 327 (1070)
-.|.+.+++.+.+...|.+|+ .+++..+...+++.++..|.-..+-+
T Consensus 261 -------~~YKklkKv~K~les~e~~ie--------------------------~~~~t~cle~ge~vlk~ep~~~~ir~ 307 (504)
T KOG0624|consen 261 -------PFYKKLKKVVKSLESAEQAIE--------------------------EKHWTECLEAGEKVLKNEPEETMIRY 307 (504)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHh--------------------------hhhHHHHHHHHHHHHhcCCcccceee
Confidence 114444444445445444442 45667777888888887777544433
Q ss_pred H----HHHHHHhhCChhHHHHHHHHHHHHHhhhchHHHHHHHHHHHHhCCHHHHHHHHHHHhhccChhh
Q 001486 328 R----YVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRF 392 (1070)
Q Consensus 328 ~----ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~eA~~~~~~al~~~~p~~ 392 (1070)
+ +..++...|++-+|+..+.+++.+ .|++..+++..|+.+.....||.|+.-|++|. +.++++
T Consensus 308 ~~~r~~c~C~~~d~~~~eAiqqC~evL~~-d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~-e~n~sn 374 (504)
T KOG0624|consen 308 NGFRVLCTCYREDEQFGEAIQQCKEVLDI-DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKAL-ELNESN 374 (504)
T ss_pred eeeheeeecccccCCHHHHHHHHHHHHhc-CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCccc
Confidence 2 334555667788888888888876 66666788888887777788888888888887 565544
No 101
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.05 E-value=7e-09 Score=120.83 Aligned_cols=228 Identities=11% Similarity=-0.033 Sum_probs=188.9
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhhhchHHHHHHH
Q 001486 286 DIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNA 365 (1070)
Q Consensus 286 p~~~~~W~~yi~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a 365 (1070)
|.....=..+++.+.+.|=...|..+|+|. ..|-..+.+|...|+..+|..+..+-++ .+.+|.+|+..+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LG 464 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLG 464 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhh
Confidence 334445566788888999999999999996 7999999999999999999999988776 466788999988
Q ss_pred HHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHh
Q 001486 366 RYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYT 445 (1070)
Q Consensus 366 ~~e~~~g~~~eA~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~ 445 (1070)
.+.....-+++|.+++.. .+.++-+.++....+.++|.++.+.|++.++. .+.....|+.+|.+..
T Consensus 465 Dv~~d~s~yEkawElsn~-------~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~------nplq~~~wf~~G~~AL- 530 (777)
T KOG1128|consen 465 DVLHDPSLYEKAWELSNY-------ISARAQRSLALLILSNKDFSEADKHLERSLEI------NPLQLGTWFGLGCAAL- 530 (777)
T ss_pred hhccChHHHHHHHHHhhh-------hhHHHHHhhccccccchhHHHHHHHHHHHhhc------CccchhHHHhccHHHH-
Confidence 776555555555555443 23445555666556679999999999999999 7889999999999998
Q ss_pred hcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCCcchhHHHHHHHHHhccCCcccccCChhhHHHHHHHHHHHHH
Q 001486 446 TTGSADNARDILIDGIKHVPNCKLLLEELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLD 525 (1070)
Q Consensus 446 ~~g~~e~Ar~iyekaL~~~P~~~~lw~~y~~~e~~~g~~~~~~~ar~l~ekAl~~~~~~s~~l~~~~~~~l~~~~~~~e~ 525 (1070)
..+++..|.++|.+++...|++.+.|.++....++.|...+ ++..+.+|++.+ -.+..+|+-|.-+..
T Consensus 531 qlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~r---a~~~l~EAlKcn---------~~~w~iWENymlvsv 598 (777)
T KOG1128|consen 531 QLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKR---AFRKLKEALKCN---------YQHWQIWENYMLVSV 598 (777)
T ss_pred HHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHH---HHHHHHHHhhcC---------CCCCeeeechhhhhh
Confidence 99999999999999999999999999999999999987766 679999999632 346789999999999
Q ss_pred HhCCHHHHHHHHHHHHHhCCCCcc
Q 001486 526 LCGTIHDIRNAWNQHIKLFPHTVR 549 (1070)
Q Consensus 526 ~~G~~~~a~~~~~ra~~~~p~~~~ 549 (1070)
+.|.+++|+++|.|.+.+-.++..
T Consensus 599 dvge~eda~~A~~rll~~~~~~~d 622 (777)
T KOG1128|consen 599 DVGEFEDAIKAYHRLLDLRKKYKD 622 (777)
T ss_pred hcccHHHHHHHHHHHHHhhhhccc
Confidence 999999999999998887755443
No 102
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.01 E-value=4.7e-09 Score=104.47 Aligned_cols=126 Identities=10% Similarity=-0.093 Sum_probs=105.2
Q ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhhhchHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Q 001486 308 VVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYID 387 (1070)
Q Consensus 308 a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~eA~~~~~~al~~ 387 (1070)
-..+|++|+...|.+ |+.++..+...|++++|...|++++.+ .|.++.+|+..|..+...|++++|+..|.+++ .
T Consensus 12 ~~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~-~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al-~ 86 (144)
T PRK15359 12 PEDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMA-QPWSWRAHIALAGTWMMLKEYTTAINFYGHAL-M 86 (144)
T ss_pred HHHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHH-h
Confidence 356888888887764 667788888889999999999998886 66777888888888888999999999999998 7
Q ss_pred cChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHH
Q 001486 388 SDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTY 444 (1070)
Q Consensus 388 ~~p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~ 444 (1070)
++|++..+|+.++.++...|++++|+..|+++++. .|.++..|...+.+..
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~------~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM------SYADASWSEIRQNAQI 137 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCChHHHHHHHHHHH
Confidence 88888888999999888889999999999999988 6778888877766543
No 103
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.99 E-value=2.2e-08 Score=122.90 Aligned_cols=138 Identities=14% Similarity=0.108 Sum_probs=67.7
Q ss_pred CCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhhhchHHHHHHHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHH
Q 001486 319 CADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTF 398 (1070)
Q Consensus 319 ~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~eA~~~~~~al~~~~p~~~~~w~~ 398 (1070)
.|.+.++.+.+|......|.+++|+.++++++.. .|+...++..++..+.+.+++++|+..+++++ ..+|++....+.
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~-~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l-~~~p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR-FPDSSEAFILMLRGVKRQQGIEAGRAEIELYF-SGGSSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh-CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHh-hcCCCCHHHHHH
Confidence 3444445555555555555555555555555443 34444444444555555555555555555554 444444444445
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCC
Q 001486 399 KANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVP 465 (1070)
Q Consensus 399 ~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~g~~e~Ar~iyekaL~~~P 465 (1070)
++.++...|.+++|..+|++++.. .+..+++|+.+|.++. ..|+.++|..+|++|++...
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~------~p~~~~~~~~~a~~l~-~~G~~~~A~~~~~~a~~~~~ 219 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQ------HPEFENGYVGWAQSLT-RRGALWRARDVLQAGLDAIG 219 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhc------CCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhhC
Confidence 555555555555555555555543 3444455555555544 45555555555555554433
No 104
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.98 E-value=2.3e-08 Score=122.80 Aligned_cols=138 Identities=14% Similarity=0.018 Sum_probs=130.2
Q ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhhhchHHHHH
Q 001486 284 LDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLF 363 (1070)
Q Consensus 284 ~~p~~~~~W~~yi~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~ 363 (1070)
..|+..+..+.+++.+...|.++++..++++++..+|++..+++.++..+.+.+++++|+..+++++.. .|+++...+.
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~-~p~~~~~~~~ 159 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG-GSSSAREILL 159 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-CCCCHHHHHH
Confidence 356778889999999999999999999999999999999999999999999999999999999999997 7888899999
Q ss_pred HHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 001486 364 NARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETA 423 (1070)
Q Consensus 364 ~a~~e~~~g~~~eA~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~ 423 (1070)
.|..+...|++++|..+|++++ ...|+...+|+.++.+++..|+.++|..+|++|++..
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~-~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLS-RQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHH-hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 9999999999999999999999 4778889999999999999999999999999999984
No 105
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.98 E-value=2.2e-06 Score=99.00 Aligned_cols=175 Identities=13% Similarity=-0.019 Sum_probs=113.9
Q ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhhhch----H
Q 001486 284 LDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLP----V 359 (1070)
Q Consensus 284 ~~p~~~~~W~~yi~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p----~ 359 (1070)
..|.....+..++..+...|++++|...|++++...|.+..++..++.++...|++++|+..+++++... +..+ .
T Consensus 109 ~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~-~~~~~~~~~ 187 (355)
T cd05804 109 ENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTW-DCSSMLRGH 187 (355)
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhcc-CCCcchhHH
Confidence 3444555566666777889999999999999999999999999999999999999999999999999863 2222 2
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhhccCh--hhHHHHHHHHH---HHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHH
Q 001486 360 IHLFNARYKEQIGDTSAARAAFPESYIDSDS--RFIEKVTFKAN---MERRLGNFVAACDTYKEALETAAEQRKFHTLPL 434 (1070)
Q Consensus 360 i~~~~a~~e~~~g~~~eA~~~~~~al~~~~p--~~~~~w~~~a~---le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~ 434 (1070)
.|..++.++...|++++|+.+|++++ ...+ ......+..+. .....|....+.. ++.+.....+....+....
T Consensus 188 ~~~~la~~~~~~G~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~-w~~~~~~~~~~~~~~~~~~ 265 (355)
T cd05804 188 NWWHLALFYLERGDYEAALAIYDTHI-APSAESDPALDLLDAASLLWRLELAGHVDVGDR-WEDLADYAAWHFPDHGLAF 265 (355)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHh-ccccCCChHHHHhhHHHHHHHHHhcCCCChHHH-HHHHHHHHHhhcCcccchH
Confidence 46678889999999999999999986 2222 11111101111 1112232222222 1222222111100122233
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHh
Q 001486 435 LYVQFSRLTYTTTGSADNARDILIDGIK 462 (1070)
Q Consensus 435 l~i~~A~~~~~~~g~~e~Ar~iyekaL~ 462 (1070)
..+..+.++. ..|+.++|...++....
T Consensus 266 ~~~~~a~~~~-~~~~~~~a~~~L~~l~~ 292 (355)
T cd05804 266 NDLHAALALA-GAGDKDALDKLLAALKG 292 (355)
T ss_pred HHHHHHHHHh-cCCCHHHHHHHHHHHHH
Confidence 3345666665 78889999888887765
No 106
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.94 E-value=1.7e-08 Score=106.07 Aligned_cols=117 Identities=15% Similarity=0.118 Sum_probs=94.9
Q ss_pred chHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHCCCCHHHHHHHHHH-HHHhCC--HHHHHHHHHH
Q 001486 22 GKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADH-KARLCS--IDKVVEVFER 98 (1070)
Q Consensus 22 ~~~~le~~l~~nP~s~~~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P~s~~lW~~ya~~-e~~~~~--~e~A~~lfer 98 (1070)
....|+++|+.+|+|.+.|..++..+... +++++|..+|+++++..|++..+|..++.. +...|+ +++|+.+|++
T Consensus 58 ~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~--g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~ 135 (198)
T PRK10370 58 QLQALQDKIRANPQNSEQWALLGEYYLWR--NDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDK 135 (198)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 34578888888888888888888887777 888888888888888888888888888875 355555 4888888888
Q ss_pred HHHhcCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHcCCC
Q 001486 99 AVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKD 141 (1070)
Q Consensus 99 AL~~~P~s~~lW~~y~~~~~~~~~~~~~ar~vferAL~~~p~~ 141 (1070)
+++.+|.+++.|..++..+... |++++|+..|+++++..|.+
T Consensus 136 al~~dP~~~~al~~LA~~~~~~-g~~~~Ai~~~~~aL~l~~~~ 177 (198)
T PRK10370 136 ALALDANEVTALMLLASDAFMQ-ADYAQAIELWQKVLDLNSPR 177 (198)
T ss_pred HHHhCCCChhHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCC
Confidence 8888888888888888888877 88888888888888877764
No 107
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.93 E-value=3.1e-07 Score=98.07 Aligned_cols=242 Identities=11% Similarity=0.026 Sum_probs=122.9
Q ss_pred CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC-----HHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhhh
Q 001486 282 KPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADY-----PEFWMRYVDFMESKGGREIASYALDRATQIFLKR 356 (1070)
Q Consensus 282 ~~~~p~~~~~W~~yi~~~~~~g~~~~a~~~yerAL~~~p~~-----~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~ 356 (1070)
...++..+++-..++.++.+.|..|+|+.+....+.. |+. .-+...+|+-|...|-+|.|..+|...+.. ...
T Consensus 62 l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de-~ef 139 (389)
T COG2956 62 LQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDE-GEF 139 (389)
T ss_pred HhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcc-hhh
Confidence 3345555556666666666666666666655554432 111 123445555555555556666655544432 001
Q ss_pred chHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCh-----hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCC
Q 001486 357 LPVIHLFNARYKEQIGDTSAARAAFPESYIDSDS-----RFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHT 431 (1070)
Q Consensus 357 ~p~i~~~~a~~e~~~g~~~eA~~~~~~al~~~~p-----~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~ 431 (1070)
-+...-.+..++....++++|+++-++.. .+.+ .....++.++..+.-..++++|+.++++|+.. ++.
T Consensus 140 a~~AlqqLl~IYQ~treW~KAId~A~~L~-k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa------~~~ 212 (389)
T COG2956 140 AEGALQQLLNIYQATREWEKAIDVAERLV-KLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQA------DKK 212 (389)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHH-HcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh------Ccc
Confidence 11233333444555556666665555544 2221 12233444444444445666666666666665 556
Q ss_pred cHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcH-HHHHHHHHHHHHcCCCcchhHHHHHHHHHhccCCcccccCCh
Q 001486 432 LPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCK-LLLEELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSL 510 (1070)
Q Consensus 432 ~~~l~i~~A~~~~~~~g~~e~Ar~iyekaL~~~P~~~-~lw~~y~~~e~~~g~~~~~~~ar~l~ekAl~~~~~~s~~l~~ 510 (1070)
+..+=+.+|+++. ..|+++.|.+.|++.++.+|... ++...+.......|...+ ....+.++...++
T Consensus 213 cvRAsi~lG~v~~-~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~---~~~fL~~~~~~~~-------- 280 (389)
T COG2956 213 CVRASIILGRVEL-AKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAE---GLNFLRRAMETNT-------- 280 (389)
T ss_pred ceehhhhhhHHHH-hccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHH---HHHHHHHHHHccC--------
Confidence 6666666666665 66666666666666666666532 344444444445555443 2344555554322
Q ss_pred hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 001486 511 EDVEDISSLYLQFLDLCGTIHDIRNAWNQHIKLFPH 546 (1070)
Q Consensus 511 ~~~~~l~~~~~~~e~~~G~~~~a~~~~~ra~~~~p~ 546 (1070)
..++-....++.+...-.+.|...+.+-++..|.
T Consensus 281 --g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt 314 (389)
T COG2956 281 --GADAELMLADLIELQEGIDAAQAYLTRQLRRKPT 314 (389)
T ss_pred --CccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCc
Confidence 1122233334444444455555555555555555
No 108
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.93 E-value=3.7e-08 Score=103.43 Aligned_cols=118 Identities=13% Similarity=0.107 Sum_probs=74.7
Q ss_pred CCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhhhchHHHHHHHHHH-HHhCC--HHHHHH
Q 001486 303 GDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYK-EQIGD--TSAARA 379 (1070)
Q Consensus 303 g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e-~~~g~--~~eA~~ 379 (1070)
++.++++..|+++|..+|++.+.|+.+|.++...|++++|...|++|+.+ .|+++.+++.+|..+ ...|+ .++|+.
T Consensus 53 ~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l-~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 53 QTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQL-RGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred hhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 34556666666666666666666666666666666666666666666665 555566666666543 44454 366666
Q ss_pred HHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001486 380 AFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALET 422 (1070)
Q Consensus 380 ~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~ 422 (1070)
+|++++ ..+|++..+++.++..+.+.|++++|+..|+++++.
T Consensus 132 ~l~~al-~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 132 MIDKAL-ALDANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHH-HhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 666666 555666666666666666666666666666666665
No 109
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.91 E-value=4.6e-07 Score=112.09 Aligned_cols=241 Identities=14% Similarity=0.071 Sum_probs=148.6
Q ss_pred HHHHCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHcCCCCCc
Q 001486 65 FLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLC 144 (1070)
Q Consensus 65 aL~~~P~s~~lW~~ya~~e~~~~~~e~A~~lferAL~~~P~s~~lW~~y~~~~~~~~~~~~~ar~vferAL~~~p~~~~s 144 (1070)
+..+.|.+.+.|..++..+...+++++|..+++.++..+|.++.+|...+-++... +.+.++.-+ +++...+.+.
T Consensus 23 ~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~-~~~~~~~lv--~~l~~~~~~~-- 97 (906)
T PRK14720 23 ANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSR-RPLNDSNLL--NLIDSFSQNL-- 97 (906)
T ss_pred cccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhh-cchhhhhhh--hhhhhccccc--
Confidence 34678888899999999888888999999999999999999998888877766655 554444444 3333332211
Q ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHccCCcCHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHhhcCCccccccch
Q 001486 145 HTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDD 224 (1070)
Q Consensus 145 ~~lW~~yi~fe~~~~~~~~a~~iy~raL~~p~~~~~~~~~~~~~~~~~~~eal~~~~~~~~~~~~~~~~~~~l~~~~~~~ 224 (1070)
++..+.-++.+.+.
T Consensus 98 ---------------~~~~ve~~~~~i~~--------------------------------------------------- 111 (906)
T PRK14720 98 ---------------KWAIVEHICDKILL--------------------------------------------------- 111 (906)
T ss_pred ---------------chhHHHHHHHHHHh---------------------------------------------------
Confidence 00000000000000
Q ss_pred hhhHHHhhhcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCChHHHHHHHHHHHHHHHcCC
Q 001486 225 ETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGD 304 (1070)
Q Consensus 225 e~~~~i~~~~~~~~~~~~a~~~~~~~~~~~~~y~~a~~~~~~~~~fE~ai~~~~~~~~~~~p~~~~~W~~yi~~~~~~g~ 304 (1070)
.+++..+.+.++.++.+.|+
T Consensus 112 ------------------------------------------------------------~~~~k~Al~~LA~~Ydk~g~ 131 (906)
T PRK14720 112 ------------------------------------------------------------YGENKLALRTLAEAYAKLNE 131 (906)
T ss_pred ------------------------------------------------------------hhhhhHHHHHHHHHHHHcCC
Confidence 01122255667788888999
Q ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhhh--chHHHHHHHHHH-HHhCCHHHHHHHH
Q 001486 305 FDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKR--LPVIHLFNARYK-EQIGDTSAARAAF 381 (1070)
Q Consensus 305 ~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~--~p~i~~~~a~~e-~~~g~~~eA~~~~ 381 (1070)
.+++..+|+++|..+|+++.+...||.+|... ++++|+..+.+|+..+... ...+.-.|..+. ....+++.-..+.
T Consensus 132 ~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~ 210 (906)
T PRK14720 132 NKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIE 210 (906)
T ss_pred hHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHhcCcccchHHHHHH
Confidence 99999999999999999999999999999999 9999999999999874321 112222223222 1233344444444
Q ss_pred HHHhhccC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHH
Q 001486 382 PESYIDSD-SRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLT 443 (1070)
Q Consensus 382 ~~al~~~~-p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~ 443 (1070)
++.+.... ...+.+|.-.-..++..++++++..+++++|+. .+.+..+...++.++
T Consensus 211 ~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~------~~~n~~a~~~l~~~y 267 (906)
T PRK14720 211 RKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEH------DNKNNKAREELIRFY 267 (906)
T ss_pred HHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhc------CCcchhhHHHHHHHH
Confidence 44332111 122333444444445556666666666666665 344444555555544
No 110
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.90 E-value=1.1e-07 Score=117.41 Aligned_cols=227 Identities=7% Similarity=-0.034 Sum_probs=155.6
Q ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhhhchHHHHH
Q 001486 284 LDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLF 363 (1070)
Q Consensus 284 ~~p~~~~~W~~yi~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~ 363 (1070)
.+|.+..+|..++..+...+++++|..+.+.++..+|+...+|+..|.++...++.+.+..+ +++.++..+.
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~------ 97 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNL------ 97 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhccccc------
Confidence 56889999999999999999999999999999999999999999999999999988887777 6666533221
Q ss_pred HHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHH
Q 001486 364 NARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLT 443 (1070)
Q Consensus 364 ~a~~e~~~g~~~eA~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~ 443 (1070)
++.....++...+ + .+..-.+++.+|.++.++|+.++|.++|+++|+. .+.++.+..++|.++
T Consensus 98 ---------~~~~ve~~~~~i~-~-~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~------D~~n~~aLNn~AY~~ 160 (906)
T PRK14720 98 ---------KWAIVEHICDKIL-L-YGENKLALRTLAEAYAKLNENKKLKGVWERLVKA------DRDNPEIVKKLATSY 160 (906)
T ss_pred ---------chhHHHHHHHHHH-h-hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc------CcccHHHHHHHHHHH
Confidence 1211111222222 1 2233446777888888888888888888888887 678888888888888
Q ss_pred HhhcCCHHHHHHHHHHHHhhCCC------cHHHHHHHHHHHHHcCCCcchhHHHHHHHHHhccCCcccccCChhhHHHHH
Q 001486 444 YTTTGSADNARDILIDGIKHVPN------CKLLLEELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDIS 517 (1070)
Q Consensus 444 ~~~~g~~e~Ar~iyekaL~~~P~------~~~lw~~y~~~e~~~g~~~~~~~ar~l~ekAl~~~~~~s~~l~~~~~~~l~ 517 (1070)
. .. ++++|+.++.+|+..+=+ -..+|..|+...... .+....+.++.+.. +.......+|
T Consensus 161 a-e~-dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~~~~~~~d-----~d~f~~i~~ki~~~-------~~~~~~~~~~ 226 (906)
T PRK14720 161 E-EE-DKEKAITYLKKAIYRFIKKKQYVGIEEIWSKLVHYNSDD-----FDFFLRIERKVLGH-------REFTRLVGLL 226 (906)
T ss_pred H-Hh-hHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHhcCccc-----chHHHHHHHHHHhh-------hccchhHHHH
Confidence 7 44 888888888888875322 235677666543322 22122333333321 1111122333
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcc
Q 001486 518 SLYLQFLDLCGTIHDIRNAWNQHIKLFPHTVR 549 (1070)
Q Consensus 518 ~~~~~~e~~~G~~~~a~~~~~ra~~~~p~~~~ 549 (1070)
.......+...+++++..+++++++..|++..
T Consensus 227 ~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~ 258 (906)
T PRK14720 227 EDLYEPYKALEDWDEVIYILKKILEHDNKNNK 258 (906)
T ss_pred HHHHHHHhhhhhhhHHHHHHHHHHhcCCcchh
Confidence 33334445566788899999999999888654
No 111
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.87 E-value=1.2e-07 Score=102.87 Aligned_cols=168 Identities=12% Similarity=-0.023 Sum_probs=133.8
Q ss_pred CCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhhhch---HHHHHHHHHHHHhCCHHHHHHHHHHHhhccChhhH---
Q 001486 320 ADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLP---VIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFI--- 393 (1070)
Q Consensus 320 p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p---~i~~~~a~~e~~~g~~~eA~~~~~~al~~~~p~~~--- 393 (1070)
+.....++..|..+...|+++.|+..|++++.. .|..+ .+|+..|..+...|++++|+..|++++ ...|+..
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~-~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l-~~~p~~~~~~ 107 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESR-YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFI-RLHPNHPDAD 107 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HHCcCCCchH
Confidence 456788999999999999999999999999987 45444 578888999999999999999999998 4555443
Q ss_pred HHHHHHHHHHHHc--------CCHHHHHHHHHHHHHHHHhhccCCCcHHHH-----------------HHHHHHHHhhcC
Q 001486 394 EKVTFKANMERRL--------GNFVAACDTYKEALETAAEQRKFHTLPLLY-----------------VQFSRLTYTTTG 448 (1070)
Q Consensus 394 ~~w~~~a~le~~~--------g~~~~A~~vyekal~~~~~~~~~~~~~~l~-----------------i~~A~~~~~~~g 448 (1070)
.+|+..+.++... |+++.|+..|+++++.. |.....+ ..+|.++. ..|
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~------p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~-~~g 180 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY------PNSEYAPDAKKRMDYLRNRLAGKELYVARFYL-KRG 180 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC------CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcC
Confidence 3577777766554 78999999999999983 4433221 35677776 899
Q ss_pred CHHHHHHHHHHHHhhCCCc---HHHHHHHHHHHHHcCCCcchhHHHHHHHHHhc
Q 001486 449 SADNARDILIDGIKHVPNC---KLLLEELIKFTMVHGGRSHISIVDAVISNALY 499 (1070)
Q Consensus 449 ~~e~Ar~iyekaL~~~P~~---~~lw~~y~~~e~~~g~~~~~~~ar~l~ekAl~ 499 (1070)
++++|...|+++++.+|+. ...|...+......|+.+++ ..+++....
T Consensus 181 ~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A---~~~~~~l~~ 231 (235)
T TIGR03302 181 AYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLA---QDAAAVLGA 231 (235)
T ss_pred ChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHH---HHHHHHHHh
Confidence 9999999999999998875 47888999999999987664 466666654
No 112
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.86 E-value=3.6e-06 Score=100.08 Aligned_cols=307 Identities=13% Similarity=0.095 Sum_probs=183.1
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHcCCCCCchHHHHHHHHH
Q 001486 75 YWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEF 154 (1070)
Q Consensus 75 lW~~ya~~e~~~~~~e~A~~lferAL~~~P~s~~lW~~y~~~~~~~~~~~~~ar~vferAL~~~p~~~~s~~lW~~yi~f 154 (1070)
+-+-.+.+....|++++|.++++..-..+.+...+-...+++++.. |+.++|..+|...|+..|.+. ..+..+...
T Consensus 6 ~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kL-g~~~eA~~~y~~Li~rNPdn~---~Yy~~L~~~ 81 (517)
T PF12569_consen 6 LLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKL-GRKEEAEKIYRELIDRNPDNY---DYYRGLEEA 81 (517)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHCCCcH---HHHHHHHHH
Confidence 3444556677789999999999999999888888888899999998 999999999999999988753 222222221
Q ss_pred HHHcccHHHHHHHHHHHHccCCcCHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHhhcCCccccccchhhhHHHhhhc
Q 001486 155 EISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLL 234 (1070)
Q Consensus 155 e~~~~~~~~a~~iy~raL~~p~~~~~~~~~~~~~~~~~~~eal~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~i~~~~ 234 (1070)
..-.. .+...........|.++...+..... +.. ..+. ....+++...+..++
T Consensus 82 ~g~~~-------------~~~~~~~~~~~~~y~~l~~~yp~s~~------~~r---l~L~-----~~~g~~F~~~~~~yl 134 (517)
T PF12569_consen 82 LGLQL-------------QLSDEDVEKLLELYDELAEKYPRSDA------PRR---LPLD-----FLEGDEFKERLDEYL 134 (517)
T ss_pred Hhhhc-------------ccccccHHHHHHHHHHHHHhCccccc------hhH---hhcc-----cCCHHHHHHHHHHHH
Confidence 10000 11222223333333333222211000 000 0000 001111111000000
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCChHHHHHHHHHHHHHHHcCCHH---HHHHH
Q 001486 235 DPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFD---WVVKL 311 (1070)
Q Consensus 235 ~~~~~~~~a~~~~~~~~~~~~~y~~a~~~~~~~~~fE~ai~~~~~~~~~~~p~~~~~W~~yi~~~~~~g~~~---~a~~~ 311 (1070)
+..+.++| ..++..+-.++....+.. .+..-
T Consensus 135 --------------------------------~~~l~Kgv--------------PslF~~lk~Ly~d~~K~~~i~~l~~~ 168 (517)
T PF12569_consen 135 --------------------------------RPQLRKGV--------------PSLFSNLKPLYKDPEKAAIIESLVEE 168 (517)
T ss_pred --------------------------------HHHHhcCC--------------chHHHHHHHHHcChhHHHHHHHHHHH
Confidence 00011111 012222222222111111 12222
Q ss_pred HHHHhcc------------CCCCHHHHHH--HHHHHHhhCChhHHHHHHHHHHHHHhhhchHHHHHHHHHHHHhCCHHHH
Q 001486 312 YERCLIP------------CADYPEFWMR--YVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAA 377 (1070)
Q Consensus 312 yerAL~~------------~p~~~~lW~~--ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~eA 377 (1070)
|...+.. .+....+|.. +|..+...|++++|.+.+++||.. .|.++.+++.-|+++...|++.+|
T Consensus 169 ~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h-tPt~~ely~~KarilKh~G~~~~A 247 (517)
T PF12569_consen 169 YVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH-TPTLVELYMTKARILKHAGDLKEA 247 (517)
T ss_pred HHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHCCCHHHH
Confidence 2222221 2233456755 488999999999999999999997 778889999999999999999999
Q ss_pred HHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCC-C------cHHHHHHHHHHHHhhcCCH
Q 001486 378 RAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFH-T------LPLLYVQFSRLTYTTTGSA 450 (1070)
Q Consensus 378 ~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~-~------~~~l~i~~A~~~~~~~g~~ 450 (1070)
...++.|. .++...--+-.+.+.+..+.|.+++|.+++..-... ...+ . +.-+.+..|..+. +.|++
T Consensus 248 a~~~~~Ar-~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~----~~~~~~~L~~mQc~Wf~~e~a~a~~-r~~~~ 321 (517)
T PF12569_consen 248 AEAMDEAR-ELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTRE----DVDPLSNLNDMQCMWFETECAEAYL-RQGDY 321 (517)
T ss_pred HHHHHHHH-hCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCC----CCCcccCHHHHHHHHHHHHHHHHHH-HHhhH
Confidence 99999998 676654444456677778899999999887654432 1111 1 1112366777887 89999
Q ss_pred HHHHHHHHHHHhhCC
Q 001486 451 DNARDILIDGIKHVP 465 (1070)
Q Consensus 451 e~Ar~iyekaL~~~P 465 (1070)
..|.+.|...++.+-
T Consensus 322 ~~ALk~~~~v~k~f~ 336 (517)
T PF12569_consen 322 GLALKRFHAVLKHFD 336 (517)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999998888654
No 113
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.85 E-value=1.3e-07 Score=99.02 Aligned_cols=170 Identities=11% Similarity=0.104 Sum_probs=145.5
Q ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhhhchHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Q 001486 308 VVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYID 387 (1070)
Q Consensus 308 a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~eA~~~~~~al~~ 387 (1070)
+...+-+.....|.+..+ ..++..+...|+-+.+..+..++... .+++..+...+++...+.|++.+|...|.++. .
T Consensus 52 a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~-~ 128 (257)
T COG5010 52 AAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAA-R 128 (257)
T ss_pred HHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHh-c
Confidence 444555556677888899 99999999999888888888776654 45566677678999999999999999999998 7
Q ss_pred cChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCc
Q 001486 388 SDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNC 467 (1070)
Q Consensus 388 ~~p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~g~~e~Ar~iyekaL~~~P~~ 467 (1070)
..|+..++|+.++.++.+.|+++.|+..|.+++++ ++..+.++.++|..+. ..||++.|+.++.++...-+.+
T Consensus 129 l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L------~~~~p~~~nNlgms~~-L~gd~~~A~~lll~a~l~~~ad 201 (257)
T COG5010 129 LAPTDWEAWNLLGAALDQLGRFDEARRAYRQALEL------APNEPSIANNLGMSLL-LRGDLEDAETLLLPAYLSPAAD 201 (257)
T ss_pred cCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHh------ccCCchhhhhHHHHHH-HcCCHHHHHHHHHHHHhCCCCc
Confidence 88999999999999999999999999999999999 6888999999999998 9999999999999998877778
Q ss_pred HHHHHHHHHHHHHcCCCcch
Q 001486 468 KLLLEELIKFTMVHGGRSHI 487 (1070)
Q Consensus 468 ~~lw~~y~~~e~~~g~~~~~ 487 (1070)
..+-..++-.....|+...+
T Consensus 202 ~~v~~NLAl~~~~~g~~~~A 221 (257)
T COG5010 202 SRVRQNLALVVGLQGDFREA 221 (257)
T ss_pred hHHHHHHHHHHhhcCChHHH
Confidence 87777777777777776653
No 114
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.81 E-value=7.8e-08 Score=94.46 Aligned_cols=120 Identities=17% Similarity=-0.040 Sum_probs=87.9
Q ss_pred HHHHHHHHHhhhchHHHHHHHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 001486 345 ALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAA 424 (1070)
Q Consensus 345 il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~eA~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~ 424 (1070)
.|++++.. .|+...+.+.++......|++++|...|++++ ..+|....+|..++.++...|+++.|..+|+++++.
T Consensus 5 ~~~~~l~~-~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~-~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-- 80 (135)
T TIGR02552 5 TLKDLLGL-DSEQLEQIYALAYNLYQQGRYDEALKLFQLLA-AYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL-- 80 (135)
T ss_pred hHHHHHcC-ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHH-HhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--
Confidence 45566654 44444555566666667777777777777776 556777777888888887778888888888888777
Q ss_pred hhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHH
Q 001486 425 EQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLLLEE 473 (1070)
Q Consensus 425 ~~~~~~~~~~l~i~~A~~~~~~~g~~e~Ar~iyekaL~~~P~~~~lw~~ 473 (1070)
.+..+.++..+|.++. ..|++++|.+.|+++++.+|++..++..
T Consensus 81 ----~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~ 124 (135)
T TIGR02552 81 ----DPDDPRPYFHAAECLL-ALGEPESALKALDLAIEICGENPEYSEL 124 (135)
T ss_pred ----CCCChHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhccccchHHHH
Confidence 5777788888888877 7888888888888888888877765543
No 115
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.80 E-value=3.6e-05 Score=85.18 Aligned_cols=144 Identities=12% Similarity=0.046 Sum_probs=106.6
Q ss_pred HHHHHHHhCCCCHHHHHHHHHH----------HHhcCCCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHHH
Q 001486 25 GLEEFIAEGSLDFDEWTSLLSE----------IENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVE 94 (1070)
Q Consensus 25 ~le~~l~~nP~s~~~W~~li~~----------~~~~~~~~~~~a~~vyeraL~~~P~s~~lW~~ya~~e~~~~~~e~A~~ 94 (1070)
.+-..|-.-|.....|.+.-.. +.+..+|++.+|.+...|+-+.-+...-..+..++..-..|+++.+..
T Consensus 60 ~~l~~v~~~~~~~~~w~~~rKrrra~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~ 139 (400)
T COG3071 60 WLLRRVLRTPAHTRGWFSRRKRRRARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANR 139 (400)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHH
Confidence 4556667778888999884332 233455999999999999888888777777777777777899999999
Q ss_pred HHHHHHHhcCC-CHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHcccHHHHHHHHHHHH
Q 001486 95 VFERAVQSATY-SVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTL 172 (1070)
Q Consensus 95 lferAL~~~P~-s~~lW~~y~~~~~~~~~~~~~ar~vferAL~~~p~~~~s~~lW~~yi~fe~~~~~~~~a~~iy~raL 172 (1070)
.+.+|-+.-++ ..-.-+.-++.++.. +|+..|+...+.+++..|.+ ..+-....+.....|++..+.++..+.-
T Consensus 140 yL~eaae~~~~~~l~v~ltrarlll~~-~d~~aA~~~v~~ll~~~pr~---~~vlrLa~r~y~~~g~~~~ll~~l~~L~ 214 (400)
T COG3071 140 YLAEAAELAGDDTLAVELTRARLLLNR-RDYPAARENVDQLLEMTPRH---PEVLRLALRAYIRLGAWQALLAILPKLR 214 (400)
T ss_pred HHHHHhccCCCchHHHHHHHHHHHHhC-CCchhHHHHHHHHHHhCcCC---hHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 99999998333 233556667777777 99999999999999887764 4555566666666677666666655443
No 116
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.79 E-value=1.1e-07 Score=111.09 Aligned_cols=193 Identities=11% Similarity=-0.009 Sum_probs=164.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhhhchHHHHHHHH
Q 001486 287 IQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNAR 366 (1070)
Q Consensus 287 ~~~~~W~~yi~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~ 366 (1070)
....+|-..+.++...|+..+|..+..+-+. .+..+-+|..++++.... ..|++|.++...........+|.
T Consensus 422 Erlemw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~-------s~yEkawElsn~~sarA~r~~~~ 493 (777)
T KOG1128|consen 422 ERLEMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDP-------SLYEKAWELSNYISARAQRSLAL 493 (777)
T ss_pred HhHHHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccCh-------HHHHHHHHHhhhhhHHHHHhhcc
Confidence 4567999999999999998899988888888 677778888888877655 46666666544344455666666
Q ss_pred HHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhh
Q 001486 367 YKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTT 446 (1070)
Q Consensus 367 ~e~~~g~~~eA~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~ 446 (1070)
...+.++|.+|.+.|++.+ +++|..+..|+.++-+...++++..|.++|.+++.+ .|.....|.+++..+. +
T Consensus 494 ~~~~~~~fs~~~~hle~sl-~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL------~Pd~~eaWnNls~ayi-~ 565 (777)
T KOG1128|consen 494 LILSNKDFSEADKHLERSL-EINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL------EPDNAEAWNNLSTAYI-R 565 (777)
T ss_pred ccccchhHHHHHHHHHHHh-hcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhc------CCCchhhhhhhhHHHH-H
Confidence 6677899999999999999 889999999999999999999999999999999998 7899999999999998 9
Q ss_pred cCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCCcchhHHHHHHHHHh
Q 001486 447 TGSADNARDILIDGIKHVPNCKLLLEELIKFTMVHGGRSHISIVDAVISNAL 498 (1070)
Q Consensus 447 ~g~~e~Ar~iyekaL~~~P~~~~lw~~y~~~e~~~g~~~~~~~ar~l~ekAl 498 (1070)
.|+..+|+.++.+|++.+-.+..+|.+|.-.....|..+.+ ...+.+.+
T Consensus 566 ~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda---~~A~~rll 614 (777)
T KOG1128|consen 566 LKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDA---IKAYHRLL 614 (777)
T ss_pred HhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHH---HHHHHHHH
Confidence 99999999999999999988999999999999988887764 35555554
No 117
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.78 E-value=5.5e-07 Score=93.42 Aligned_cols=160 Identities=17% Similarity=0.039 Sum_probs=135.4
Q ss_pred HcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhhhchHHHHHHHHHHHHhCCHHHHHHH
Q 001486 301 KQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAA 380 (1070)
Q Consensus 301 ~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~eA~~~ 380 (1070)
..|..+-|..++.+....+|.+..+-..+|.+++..|.+++|.++|++.+.- .|.+..++-.-.-+....|+.-+|++.
T Consensus 64 d~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d-dpt~~v~~KRKlAilka~GK~l~aIk~ 142 (289)
T KOG3060|consen 64 DTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLED-DPTDTVIRKRKLAILKAQGKNLEAIKE 142 (289)
T ss_pred HhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc-CcchhHHHHHHHHHHHHcCCcHHHHHH
Confidence 4677888999999988888999999999999999999999999999999875 344444555555556668888889888
Q ss_pred HHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhcC---CHHHHHHHH
Q 001486 381 FPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTG---SADNARDIL 457 (1070)
Q Consensus 381 ~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~g---~~e~Ar~iy 457 (1070)
+...++ ..+...++|..++.++...|+|++|.-||++++-. .|..+.++..+|.+++ ..| +++-||+.|
T Consensus 143 ln~YL~-~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~------~P~n~l~f~rlae~~Y-t~gg~eN~~~arkyy 214 (289)
T KOG3060|consen 143 LNEYLD-KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI------QPFNPLYFQRLAEVLY-TQGGAENLELARKYY 214 (289)
T ss_pred HHHHHH-HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc------CCCcHHHHHHHHHHHH-HHhhHHHHHHHHHHH
Confidence 888884 44667899999999999999999999999999988 7999999999999988 544 467899999
Q ss_pred HHHHhhCCCcHH
Q 001486 458 IDGIKHVPNCKL 469 (1070)
Q Consensus 458 ekaL~~~P~~~~ 469 (1070)
+++|+.+|.+..
T Consensus 215 ~~alkl~~~~~r 226 (289)
T KOG3060|consen 215 ERALKLNPKNLR 226 (289)
T ss_pred HHHHHhChHhHH
Confidence 999999996543
No 118
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.77 E-value=7.8e-06 Score=95.98 Aligned_cols=213 Identities=15% Similarity=0.148 Sum_probs=120.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhhhchHHHHHHHHHHH
Q 001486 290 KNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKE 369 (1070)
Q Consensus 290 ~~W~~yi~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~ 369 (1070)
.+|.=++.++++.|+.+.|+.+|+.|-. |+...+++.-.|+.++|..|-+..-. -..-+.+|+.++
T Consensus 913 ~L~~WWgqYlES~GemdaAl~~Y~~A~D--------~fs~VrI~C~qGk~~kAa~iA~esgd------~AAcYhlaR~YE 978 (1416)
T KOG3617|consen 913 SLYSWWGQYLESVGEMDAALSFYSSAKD--------YFSMVRIKCIQGKTDKAARIAEESGD------KAACYHLARMYE 978 (1416)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHhhh--------hhhheeeEeeccCchHHHHHHHhccc------HHHHHHHHHHhh
Confidence 5677778888999999999999998843 55555556666666666655544322 133444566666
Q ss_pred HhCCHHHHHHHHHHHhh------ccCh-hh------------HHHHHHHHHHHHHcC-CHHHHHHHHHHH----------
Q 001486 370 QIGDTSAARAAFPESYI------DSDS-RF------------IEKVTFKANMERRLG-NFVAACDTYKEA---------- 419 (1070)
Q Consensus 370 ~~g~~~eA~~~~~~al~------~~~p-~~------------~~~w~~~a~le~~~g-~~~~A~~vyeka---------- 419 (1070)
..|++-+|...|-||-. -+.. +. .+-.+..+.+++..| .++.|..+|.+|
T Consensus 979 n~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelA 1058 (1416)
T KOG3617|consen 979 NDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELA 1058 (1416)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHH
Confidence 77777777666665521 0000 00 001122233344443 555555555443
Q ss_pred --------HHHHHhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHH------HHHHHhhCCC-cHHHHHHHHHHHHHcCCC
Q 001486 420 --------LETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDI------LIDGIKHVPN-CKLLLEELIKFTMVHGGR 484 (1070)
Q Consensus 420 --------l~~~~~~~~~~~~~~l~i~~A~~~~~~~g~~e~Ar~i------yekaL~~~P~-~~~lw~~y~~~e~~~g~~ 484 (1070)
|+++..+-+...++++....|.|.. ....+++|..+ |++||.+|.+ +..+-..+++
T Consensus 1059 F~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~-~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE-------- 1129 (1416)
T KOG3617|consen 1059 FRTQQFSALDLIAKDLDAGSDPKLLRRCADFFE-NNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAE-------- 1129 (1416)
T ss_pred HhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHH--------
Confidence 3333344445567788888888776 66677776655 3334433322 2222222222
Q ss_pred cchhHHHHHHHHHhccCCcccccCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 001486 485 SHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQ 539 (1070)
Q Consensus 485 ~~~~~ar~l~ekAl~~~~~~s~~l~~~~~~~l~~~~~~~e~~~G~~~~a~~~~~r 539 (1070)
-+. |..+...+...+..+.....+++...|++..|.+-|..
T Consensus 1130 ------------~mT--p~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQ 1170 (1416)
T KOG3617|consen 1130 ------------LMT--PTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQ 1170 (1416)
T ss_pred ------------hcC--cCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhh
Confidence 221 11112344456678888888899888988887776643
No 119
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.75 E-value=2.5e-07 Score=90.77 Aligned_cols=115 Identities=13% Similarity=0.225 Sum_probs=107.9
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc
Q 001486 24 QGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSA 103 (1070)
Q Consensus 24 ~~le~~l~~nP~s~~~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P~s~~lW~~ya~~e~~~~~~e~A~~lferAL~~~ 103 (1070)
..|+++|..+|.+...-..++..+... +++++|...|++++..+|.+...|..++..+...+++++|..+|++++...
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~--~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQ--GRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHc--ccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 479999999999998888888877777 899999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHcCCC
Q 001486 104 TYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKD 141 (1070)
Q Consensus 104 P~s~~lW~~y~~~~~~~~~~~~~ar~vferAL~~~p~~ 141 (1070)
|.+.+.|..++.++... |++++|...|+++++..|.+
T Consensus 82 p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~ 118 (135)
T TIGR02552 82 PDDPRPYFHAAECLLAL-GEPESALKALDLAIEICGEN 118 (135)
T ss_pred CCChHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhcccc
Confidence 99999999999999988 99999999999999988764
No 120
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.73 E-value=3.6e-07 Score=95.78 Aligned_cols=168 Identities=13% Similarity=0.023 Sum_probs=147.5
Q ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhhhchHHHHH
Q 001486 284 LDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLF 363 (1070)
Q Consensus 284 ~~p~~~~~W~~yi~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~ 363 (1070)
.+|...++ .++..-+...|+-+....+..+++...|.+..+...+++.....|++..|..+|.||... .|++...|..
T Consensus 62 ~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~ 139 (257)
T COG5010 62 RNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNL 139 (257)
T ss_pred cCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhH
Confidence 46777777 788887778888888888888888888999999988999999999999999999999987 7788899999
Q ss_pred HHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHH
Q 001486 364 NARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLT 443 (1070)
Q Consensus 364 ~a~~e~~~g~~~eA~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~ 443 (1070)
.+-.+.+.|+++.|+..|.+++ ++.+....+..+.+..+.-.|+++.|+.++.++... .+.+..+.-+++.+.
T Consensus 140 lgaaldq~Gr~~~Ar~ay~qAl-~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~------~~ad~~v~~NLAl~~ 212 (257)
T COG5010 140 LGAALDQLGRFDEARRAYRQAL-ELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS------PAADSRVRQNLALVV 212 (257)
T ss_pred HHHHHHHccChhHHHHHHHHHH-HhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC------CCCchHHHHHHHHHH
Confidence 9999999999999999999999 777877888888888888889999999999999887 566888999999888
Q ss_pred HhhcCCHHHHHHHHHHHH
Q 001486 444 YTTTGSADNARDILIDGI 461 (1070)
Q Consensus 444 ~~~~g~~e~Ar~iyekaL 461 (1070)
- ..|++++|+++-..-+
T Consensus 213 ~-~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 213 G-LQGDFREAEDIAVQEL 229 (257)
T ss_pred h-hcCChHHHHhhccccc
Confidence 7 8999999998875543
No 121
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.72 E-value=5.3e-05 Score=83.86 Aligned_cols=235 Identities=17% Similarity=0.088 Sum_probs=164.2
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhhhchHH-HH-H
Q 001486 286 DIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVI-HL-F 363 (1070)
Q Consensus 286 p~~~~~W~~yi~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i-~~-~ 363 (1070)
.+...+...........||+..|+.....++...|.+..+-.....+|...|++.....++.+.-+.-.-+++.. .+ .
T Consensus 150 ~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~ 229 (400)
T COG3071 150 DDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQ 229 (400)
T ss_pred CchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHH
Confidence 345566677777777788888888888888888888888888888888888888888777766555311111110 00 0
Q ss_pred HH--HHHHHhCCHHHHH---HHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHH
Q 001486 364 NA--RYKEQIGDTSAAR---AAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQ 438 (1070)
Q Consensus 364 ~a--~~e~~~g~~~eA~---~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~ 438 (1070)
++ .++...++-..+. ...+..- ......+.+-+.++.-+.++|+.++|.++.+.+++. ..++.++..
T Consensus 230 ~a~~glL~q~~~~~~~~gL~~~W~~~p-r~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-------~~D~~L~~~ 301 (400)
T COG3071 230 QAWEGLLQQARDDNGSEGLKTWWKNQP-RKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-------QWDPRLCRL 301 (400)
T ss_pred HHHHHHHHHHhccccchHHHHHHHhcc-HHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-------ccChhHHHH
Confidence 01 1111111111111 1122111 111234666778888888999999999999999997 455665555
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCCcchhHHHHHHHHHhccCCcccccCChhhHHHHHH
Q 001486 439 FSRLTYTTTGSADNARDILIDGIKHVPNCKLLLEELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISS 518 (1070)
Q Consensus 439 ~A~~~~~~~g~~e~Ar~iyekaL~~~P~~~~lw~~y~~~e~~~g~~~~~~~ar~l~ekAl~~~~~~s~~l~~~~~~~l~~ 518 (1070)
++.+ ..++.+.=.+..++.++..|+++.+|..+..+..+.+.+.+ |...||.|++..+ +..-|.
T Consensus 302 ~~~l---~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~k---A~~~leaAl~~~~----------s~~~~~ 365 (400)
T COG3071 302 IPRL---RPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGK---ASEALEAALKLRP----------SASDYA 365 (400)
T ss_pred Hhhc---CCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHH---HHHHHHHHHhcCC----------ChhhHH
Confidence 4442 68899999999999999999999999999999999887776 5699999997543 223466
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhC
Q 001486 519 LYLQFLDLCGTIHDIRNAWNQHIKLF 544 (1070)
Q Consensus 519 ~~~~~e~~~G~~~~a~~~~~ra~~~~ 544 (1070)
......+..|..+++..+++.++.++
T Consensus 366 ~la~~~~~~g~~~~A~~~r~e~L~~~ 391 (400)
T COG3071 366 ELADALDQLGEPEEAEQVRREALLLT 391 (400)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 66777788999999999999998665
No 122
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.63 E-value=6.7e-07 Score=88.01 Aligned_cols=100 Identities=10% Similarity=-0.090 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHH
Q 001486 360 IHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQF 439 (1070)
Q Consensus 360 i~~~~a~~e~~~g~~~eA~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~ 439 (1070)
..+.+|..+...|++++|.++|+-++ .++|.+.+.|+.++-+...+|++++|+.+|.+|+.+ .+.++..+.+.
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~-~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L------~~ddp~~~~~a 109 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLT-IYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI------KIDAPQAPWAA 109 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHH-HhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc------CCCCchHHHHH
Confidence 44566677788999999999999888 788999999999999999999999999999999998 78899999999
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHhhCCCc
Q 001486 440 SRLTYTTTGSADNARDILIDGIKHVPNC 467 (1070)
Q Consensus 440 A~~~~~~~g~~e~Ar~iyekaL~~~P~~ 467 (1070)
|.++. ..|+.+.|++.|+.++..+...
T Consensus 110 g~c~L-~lG~~~~A~~aF~~Ai~~~~~~ 136 (157)
T PRK15363 110 AECYL-ACDNVCYAIKALKAVVRICGEV 136 (157)
T ss_pred HHHHH-HcCCHHHHHHHHHHHHHHhccC
Confidence 99998 9999999999999999988544
No 123
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.60 E-value=3.2e-07 Score=97.84 Aligned_cols=110 Identities=14% Similarity=0.080 Sum_probs=99.0
Q ss_pred HHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhc
Q 001486 368 KEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTT 447 (1070)
Q Consensus 368 e~~~g~~~eA~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~ 447 (1070)
+.+.++|.+|+..|.+|| .++|.+.-.|.+++..+.++|.++.|++-.+.||.+ +|..+++|..+|.++. ..
T Consensus 91 ~m~~~~Y~eAv~kY~~AI-~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i------Dp~yskay~RLG~A~~-~~ 162 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAI-ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI------DPHYSKAYGRLGLAYL-AL 162 (304)
T ss_pred HHHhhhHHHHHHHHHHHH-hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc------ChHHHHHHHHHHHHHH-cc
Confidence 466889999999999999 899988989999999999999999999999999998 7899999999999998 99
Q ss_pred CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCCc
Q 001486 448 GSADNARDILIDGIKHVPNCKLLLEELIKFTMVHGGRS 485 (1070)
Q Consensus 448 g~~e~Ar~iyekaL~~~P~~~~lw~~y~~~e~~~g~~~ 485 (1070)
|++++|...|+|||.++|++..+|..+-..+...+...
T Consensus 163 gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 163 GKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred CcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999988877666666555444
No 124
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=98.59 E-value=2.5e-06 Score=96.65 Aligned_cols=112 Identities=16% Similarity=0.275 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHhCC------------HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChh
Q 001486 58 IGLVYDSFLAEFPLCYGYWRKYADHKARLCS------------IDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPN 125 (1070)
Q Consensus 58 a~~vyeraL~~~P~s~~lW~~ya~~e~~~~~------------~e~A~~lferAL~~~P~s~~lW~~y~~~~~~~~~~~~ 125 (1070)
...-|++.++.+|.+++.|+.|+++-.+.-. .+....+|+|||+.+|.+..||+.|++...+. -+.+
T Consensus 4 r~~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~-~~~~ 82 (321)
T PF08424_consen 4 RTAELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKV-WDSE 82 (321)
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-CCHH
Confidence 3467899999999999999999998655421 46778899999999999999999999999888 7888
Q ss_pred HHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHc---ccHHHHHHHHHHHHc
Q 001486 126 DVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQ---QRWSSLAQIFVQTLR 173 (1070)
Q Consensus 126 ~ar~vferAL~~~p~~~~s~~lW~~yi~fe~~~---~~~~~a~~iy~raL~ 173 (1070)
+..+.|++++...+. +..||..|++|.... -.++.++.+|.++|.
T Consensus 83 ~l~~~we~~l~~~~~---~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~ 130 (321)
T PF08424_consen 83 KLAKKWEELLFKNPG---SPELWREYLDFRQSNFASFTVSDVRDVYEKCLR 130 (321)
T ss_pred HHHHHHHHHHHHCCC---ChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Confidence 999999999998766 678999999999873 357888889888875
No 125
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=98.58 E-value=1.7e-07 Score=99.07 Aligned_cols=140 Identities=11% Similarity=0.254 Sum_probs=112.3
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHH---hcCCCcH-----------------HHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q 001486 25 GLEEFIAEGSLDFDEWTSLLSEIE---NSCPDDI-----------------EMIGLVYDSFLAEFPLCYGYWRKYADHKA 84 (1070)
Q Consensus 25 ~le~~l~~nP~s~~~W~~li~~~~---~~~~~~~-----------------~~a~~vyeraL~~~P~s~~lW~~ya~~e~ 84 (1070)
.||..|.+--....-+++||.+-- +.+.... .+....|-|+...||+++++|..|+....
T Consensus 39 ~fE~rL~rr~~klnDf~~YI~yE~nleklRaKR~Kr~~v~~K~s~sD~sipqk~~f~~~R~tnkff~D~k~w~~y~~Y~~ 118 (435)
T COG5191 39 KFELRLQRREKKLNDFMRYIKYECNLEKLRAKRVKRKKVGKKASFSDMSIPQKKIFELYRSTNKFFNDPKIWSQYAAYVI 118 (435)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhhHHHHHHHHHHHHHhcccccchhccccceeeEeeehhhhcCCCCcHHHHHHHHHHH
Confidence 578888888888888888887421 1000000 12334577888899999999999999999
Q ss_pred HhCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHcccHHHH
Q 001486 85 RLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSL 164 (1070)
Q Consensus 85 ~~~~~e~A~~lferAL~~~P~s~~lW~~y~~~~~~~~~~~~~ar~vferAL~~~p~~~~s~~lW~~yi~fe~~~~~~~~a 164 (1070)
+.+.+.+...+|..||..+|.+++||+--|.|+....++++.+|.+|.++|+..+. +..||..|.+||... +
T Consensus 119 k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~---~p~iw~eyfr~El~y-----i 190 (435)
T COG5191 119 KKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSR---SPRIWIEYFRMELMY-----I 190 (435)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCC---CchHHHHHHHHHHHH-----H
Confidence 99999999999999999999999999998999887768999999999999998776 678999999999753 4
Q ss_pred HHHHHHHH
Q 001486 165 AQIFVQTL 172 (1070)
Q Consensus 165 ~~iy~raL 172 (1070)
.+++.|.+
T Consensus 191 TKL~~R~~ 198 (435)
T COG5191 191 TKLINRRE 198 (435)
T ss_pred HHHHhhHH
Confidence 55555553
No 126
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.58 E-value=1.2e-05 Score=91.20 Aligned_cols=152 Identities=9% Similarity=-0.132 Sum_probs=129.4
Q ss_pred CCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhhhchHHHHHHHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHH
Q 001486 320 ADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFK 399 (1070)
Q Consensus 320 p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~eA~~~~~~al~~~~p~~~~~w~~~ 399 (1070)
|....+|+-.|.-+...|.+++|+..+...+.. .|+++.+|...+.++.+.++..+|.+.|++++ ..+|+..-+|+.+
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal-~l~P~~~~l~~~~ 380 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKAL-ALDPNSPLLQLNL 380 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH-hcCCCccHHHHHH
Confidence 677889999999888999999999999887765 77888888889999999999999999999999 7788888899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 001486 400 ANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLLLEELIKFTM 479 (1070)
Q Consensus 400 a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~g~~e~Ar~iyekaL~~~P~~~~lw~~y~~~e~ 479 (1070)
++.+...|++.+|+.++.+.+.. .|.++..|-.+|+.+. ..|+..+|...+-.+.....+-.. |..++....
T Consensus 381 a~all~~g~~~eai~~L~~~~~~------~p~dp~~w~~LAqay~-~~g~~~~a~~A~AE~~~~~G~~~~-A~~~l~~A~ 452 (484)
T COG4783 381 AQALLKGGKPQEAIRILNRYLFN------DPEDPNGWDLLAQAYA-ELGNRAEALLARAEGYALAGRLEQ-AIIFLMRAS 452 (484)
T ss_pred HHHHHhcCChHHHHHHHHHHhhc------CCCCchHHHHHHHHHH-HhCchHHHHHHHHHHHHhCCCHHH-HHHHHHHHH
Confidence 99999999999999999999887 6889999999999998 999999999999888877665333 344444443
Q ss_pred Hc
Q 001486 480 VH 481 (1070)
Q Consensus 480 ~~ 481 (1070)
..
T Consensus 453 ~~ 454 (484)
T COG4783 453 QQ 454 (484)
T ss_pred Hh
Confidence 33
No 127
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.57 E-value=2.6e-06 Score=96.30 Aligned_cols=163 Identities=17% Similarity=0.032 Sum_probs=139.7
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhhhchHHHHHHHH
Q 001486 287 IQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNAR 366 (1070)
Q Consensus 287 ~~~~~W~~yi~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~ 366 (1070)
.....|+-.+.-+...|.+++|+..+...+...|++.-+|...+.++.+.++..+|.+.+++++.. .|+.+.+|+.+|.
T Consensus 304 ~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l-~P~~~~l~~~~a~ 382 (484)
T COG4783 304 GGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALAL-DPNSPLLQLNLAQ 382 (484)
T ss_pred cchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-CCCccHHHHHHHH
Confidence 344567666666667899999999999999999999999999999999999999999999999997 6777899999999
Q ss_pred HHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhh
Q 001486 367 YKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTT 446 (1070)
Q Consensus 367 ~e~~~g~~~eA~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~ 446 (1070)
.+.+.|++.+|..++.+.+ .-+|+++..|..++..+..+|+..++...+-++ +. .
T Consensus 383 all~~g~~~eai~~L~~~~-~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~-----------------------~~-~ 437 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYL-FNDPEDPNGWDLLAQAYAELGNRAEALLARAEG-----------------------YA-L 437 (484)
T ss_pred HHHhcCChHHHHHHHHHHh-hcCCCCchHHHHHHHHHHHhCchHHHHHHHHHH-----------------------HH-h
Confidence 9999999999999999998 667889999999999999999887776665443 23 5
Q ss_pred cCCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 001486 447 TGSADNARDILIDGIKHVPNCKLLLEELI 475 (1070)
Q Consensus 447 ~g~~e~Ar~iyekaL~~~P~~~~lw~~y~ 475 (1070)
.|+++.|...+.++.+...-+..-|..|-
T Consensus 438 ~G~~~~A~~~l~~A~~~~~~~~~~~aR~d 466 (484)
T COG4783 438 AGRLEQAIIFLMRASQQVKLGFPDWARAD 466 (484)
T ss_pred CCCHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 88899999999999888766666666653
No 128
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.56 E-value=0.00065 Score=78.60 Aligned_cols=127 Identities=16% Similarity=0.086 Sum_probs=82.3
Q ss_pred CHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhcCCHHH
Q 001486 373 DTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADN 452 (1070)
Q Consensus 373 ~~~eA~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~g~~e~ 452 (1070)
...+|..++....+....+...+.+..+.+....|+++.|+.++...+................+.+...+++..++.+-
T Consensus 356 ~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~ 435 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDS 435 (652)
T ss_pred HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCcc
Confidence 44556666665552222233556777888889999999999999955433211111111112233344444448888888
Q ss_pred HHHHHHHHHhhCCC----c---HHHHHHHHHHHHHcCCCcchhHHHHHHHHHhccCC
Q 001486 453 ARDILIDGIKHVPN----C---KLLLEELIKFTMVHGGRSHISIVDAVISNALYSRP 502 (1070)
Q Consensus 453 Ar~iyekaL~~~P~----~---~~lw~~y~~~e~~~g~~~~~~~ar~l~ekAl~~~~ 502 (1070)
|..++..|+..+.. + ..+|...+.|+.++|..+. +..++++.+..++
T Consensus 436 a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~e---a~s~leel~k~n~ 489 (652)
T KOG2376|consen 436 ASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEE---ASSLLEELVKFNP 489 (652)
T ss_pred HHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHH---HHHHHHHHHHhCC
Confidence 99999999886432 2 2578889999999987665 5689999987555
No 129
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=98.51 E-value=1.9e-07 Score=98.67 Aligned_cols=107 Identities=13% Similarity=0.224 Sum_probs=95.0
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHhc
Q 001486 25 GLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKAR-LCSIDKVVEVFERAVQSA 103 (1070)
Q Consensus 25 ~le~~l~~nP~s~~~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P~s~~lW~~ya~~e~~-~~~~e~A~~lferAL~~~ 103 (1070)
.|-++..+.|.|++.|..|+.+..+. +.+.+...+|-.+|+.+|+++++|...+.++.. .++++.+|.+|.++|..+
T Consensus 95 ~~~R~tnkff~D~k~w~~y~~Y~~k~--k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N 172 (435)
T COG5191 95 ELYRSTNKFFNDPKIWSQYAAYVIKK--KMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMN 172 (435)
T ss_pred eeehhhhcCCCCcHHHHHHHHHHHHH--HHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccC
Confidence 36778889999999999999998887 889999999999999999999999998888755 479999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHcC
Q 001486 104 TYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVG 139 (1070)
Q Consensus 104 P~s~~lW~~y~~~~~~~~~~~~~ar~vferAL~~~p 139 (1070)
|.++.||.+|.++++.- +-++|.|-++..+
T Consensus 173 ~~~p~iw~eyfr~El~y------iTKL~~R~~Kte~ 202 (435)
T COG5191 173 SRSPRIWIEYFRMELMY------ITKLINRREKTEI 202 (435)
T ss_pred CCCchHHHHHHHHHHHH------HHHHHhhHHHHhh
Confidence 99999999999998866 6677777765443
No 130
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.50 E-value=3.3e-06 Score=83.13 Aligned_cols=104 Identities=19% Similarity=0.120 Sum_probs=95.9
Q ss_pred CC-hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhhhchHHHH
Q 001486 284 LD-DIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHL 362 (1070)
Q Consensus 284 ~~-p~~~~~W~~yi~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~ 362 (1070)
++ ++.++....|+..+...|+++.|..+|+-++..+|.+...|+.+|.++...|++++|+..|.+|+.+ .+++|..++
T Consensus 29 ~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L-~~ddp~~~~ 107 (157)
T PRK15363 29 DDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI-KIDAPQAPW 107 (157)
T ss_pred CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-CCCCchHHH
Confidence 45 6677788889988889999999999999999999999999999999999999999999999999987 789999999
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcc
Q 001486 363 FNARYKEQIGDTSAARAAFPESYIDS 388 (1070)
Q Consensus 363 ~~a~~e~~~g~~~eA~~~~~~al~~~ 388 (1070)
..|..+...|+.+.|++.|+.++..+
T Consensus 108 ~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 108 AAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999998533
No 131
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=3.3e-05 Score=85.41 Aligned_cols=137 Identities=17% Similarity=0.085 Sum_probs=93.2
Q ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCH------------HHHHHHHHHHHhhCChhHHHHHHHHHHH
Q 001486 284 LDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYP------------EFWMRYVDFMESKGGREIASYALDRATQ 351 (1070)
Q Consensus 284 ~~p~~~~~W~~yi~~~~~~g~~~~a~~~yerAL~~~p~~~------------~lW~~ya~~l~~~g~~e~A~~il~rAl~ 351 (1070)
+++.+.+...-.+.++...++.+.++..|.++|...|.+. +.|-.-+.-..+.|++.+|.++|..||.
T Consensus 198 ld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~ 277 (486)
T KOG0550|consen 198 LDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALN 277 (486)
T ss_pred cccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhc
Confidence 4555555555555555567788889999999998877664 3455556666666777777777777776
Q ss_pred HHhhhc----hHHHHHHHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001486 352 IFLKRL----PVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALET 422 (1070)
Q Consensus 352 ~~~~~~----p~i~~~~a~~e~~~g~~~eA~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~ 422 (1070)
+ .|++ ..+|+..+....++|+..+|+....+++ .+++.+++.++..+.++.-++.+++|..-|++|+++
T Consensus 278 i-dP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al-~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 278 I-DPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL-KIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred C-CccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh-hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6 3321 2345555555666777777777777776 677777777777777777777777777777777776
No 132
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.46 E-value=1e-05 Score=90.30 Aligned_cols=180 Identities=17% Similarity=0.152 Sum_probs=116.3
Q ss_pred CHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhhhc-----hHHHHHHHHHHHHhCCHHHHH
Q 001486 304 DFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRL-----PVIHLFNARYKEQIGDTSAAR 378 (1070)
Q Consensus 304 ~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~-----p~i~~~~a~~e~~~g~~~eA~ 378 (1070)
+++.|..+|++| |..+...+++++|...|.+|.....+.. ...+...+.++ +..++++|.
T Consensus 30 ~~e~Aa~~y~~A--------------a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~-k~~~~~~Ai 94 (282)
T PF14938_consen 30 DYEEAADLYEKA--------------ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCY-KKGDPDEAI 94 (282)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTTHHHHH
T ss_pred CHHHHHHHHHHH--------------HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhhCHHHHH
Confidence 566666666666 4445556666666677766666543211 12333333333 334888888
Q ss_pred HHHHHHhhcc----C-hhhHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhcCCHHH
Q 001486 379 AAFPESYIDS----D-SRFIEKVTFKANMERRL-GNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADN 452 (1070)
Q Consensus 379 ~~~~~al~~~----~-p~~~~~w~~~a~le~~~-g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~g~~e~ 452 (1070)
.+|.++++.. . ....+++...+.+++.. |+++.|+.+|++|++.+...........++...|.++. ..|++++
T Consensus 95 ~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~-~l~~y~~ 173 (282)
T PF14938_consen 95 ECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYA-RLGRYEE 173 (282)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH-HTT-HHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHH-HhCCHHH
Confidence 8888887321 1 13356778888888888 99999999999999998765533445678899999998 9999999
Q ss_pred HHHHHHHHHhhCCCc-------HHHHHHHHHHHHHcCCCcchhHHHHHHHHHhccCC
Q 001486 453 ARDILIDGIKHVPNC-------KLLLEELIKFTMVHGGRSHISIVDAVISNALYSRP 502 (1070)
Q Consensus 453 Ar~iyekaL~~~P~~-------~~lw~~y~~~e~~~g~~~~~~~ar~l~ekAl~~~~ 502 (1070)
|.++|++....+-++ ..+++..+-+....||... ++..|++.....|
T Consensus 174 A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~---A~~~~~~~~~~~~ 227 (282)
T PF14938_consen 174 AIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVA---ARKALERYCSQDP 227 (282)
T ss_dssp HHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHH---HHHHHHHHGTTST
T ss_pred HHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHH---HHHHHHHHHhhCC
Confidence 999999999865432 2344444444555666443 6788888875443
No 133
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.45 E-value=2.6e-06 Score=97.99 Aligned_cols=105 Identities=19% Similarity=0.168 Sum_probs=93.8
Q ss_pred HHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHH
Q 001486 365 ARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTY 444 (1070)
Q Consensus 365 a~~e~~~g~~~eA~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~ 444 (1070)
|.-....|++++|+.+|.+++ ..+|+...+|+.++.++..+|++++|+..|++|+++ .|..+.+|+.+|.++.
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al-~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l------~P~~~~a~~~lg~~~~ 81 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAI-DLDPNNAELYADRAQANIKLGNFTEAVADANKAIEL------DPSLAKAYLRKGTACM 81 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CcCCHHHHHHHHHHHH
Confidence 455567899999999999999 788999999999999999999999999999999998 7888999999999998
Q ss_pred hhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 001486 445 TTTGSADNARDILIDGIKHVPNCKLLLEELIKF 477 (1070)
Q Consensus 445 ~~~g~~e~Ar~iyekaL~~~P~~~~lw~~y~~~ 477 (1070)
..|++++|+..|+++++..|++..+......+
T Consensus 82 -~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 82 -KLEEYQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred -HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99999999999999999999988755444333
No 134
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.44 E-value=3.7e-06 Score=89.94 Aligned_cols=114 Identities=13% Similarity=0.011 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhhhchHHHHHHHHHHHH
Q 001486 291 NWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQ 370 (1070)
Q Consensus 291 ~W~~yi~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~ 370 (1070)
-.+.-+.-+.+.++|.+|+..|.+||..+|+++.++.+-|..|.+.|.++.|.+-+++|+.+ .|+....|..++..+..
T Consensus 83 ~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i-Dp~yskay~RLG~A~~~ 161 (304)
T KOG0553|consen 83 SLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI-DPHYSKAYGRLGLAYLA 161 (304)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHc
Confidence 34444555566788999999999999999999999999999999999999999999999987 44444566666677888
Q ss_pred hCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHc
Q 001486 371 IGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRL 406 (1070)
Q Consensus 371 ~g~~~eA~~~~~~al~~~~p~~~~~w~~~a~le~~~ 406 (1070)
.|++++|...|+++| +++|+...+|-.+-..+..+
T Consensus 162 ~gk~~~A~~aykKaL-eldP~Ne~~K~nL~~Ae~~l 196 (304)
T KOG0553|consen 162 LGKYEEAIEAYKKAL-ELDPDNESYKSNLKIAEQKL 196 (304)
T ss_pred cCcHHHHHHHHHhhh-ccCCCcHHHHHHHHHHHHHh
Confidence 889999988899988 78887765555544444333
No 135
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.43 E-value=0.00061 Score=73.87 Aligned_cols=83 Identities=11% Similarity=0.185 Sum_probs=49.8
Q ss_pred HhCCHHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHcCCCCCchHHHHHHH--HHHHHcc
Q 001486 85 RLCSIDKVVEVFERAVQSA---TYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYI--EFEISQQ 159 (1070)
Q Consensus 85 ~~~~~e~A~~lferAL~~~---P~s~~lW~~y~~~~~~~~~~~~~ar~vferAL~~~p~~~~s~~lW~~yi--~fe~~~~ 159 (1070)
...+|+-|+.+++-++... -.++++|+.||.|-+ |++++|..+|..+...- +. ..++|...+ .|.. |
T Consensus 34 s~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhL---gdY~~Al~~Y~~~~~~~--~~-~~el~vnLAcc~FyL--g 105 (557)
T KOG3785|consen 34 SNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHL---GDYEEALNVYTFLMNKD--DA-PAELGVNLACCKFYL--G 105 (557)
T ss_pred hcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhh---ccHHHHHHHHHHHhccC--CC-CcccchhHHHHHHHH--H
Confidence 3446677777776665432 136679999988854 88899999888776532 11 345554433 3433 4
Q ss_pred cHHHHHHHHHHHHccC
Q 001486 160 RWSSLAQIFVQTLRFP 175 (1070)
Q Consensus 160 ~~~~a~~iy~raL~~p 175 (1070)
.+.+|..+-.++-+.|
T Consensus 106 ~Y~eA~~~~~ka~k~p 121 (557)
T KOG3785|consen 106 QYIEAKSIAEKAPKTP 121 (557)
T ss_pred HHHHHHHHHhhCCCCh
Confidence 4666666655554433
No 136
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=2.7e-05 Score=86.10 Aligned_cols=161 Identities=13% Similarity=0.016 Sum_probs=136.9
Q ss_pred HHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhhhch------------HHHHHH
Q 001486 297 SFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLP------------VIHLFN 364 (1070)
Q Consensus 297 ~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p------------~i~~~~ 364 (1070)
.++.-.|+++++...--+.++.++.+.+..+--+.++.-.++.+.|...|.+++++ .|+.. ..|-.-
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l-dpdh~~sk~~~~~~k~le~~k~~ 255 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRL-DPDHQKSKSASMMPKKLEVKKER 255 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhcc-ChhhhhHHhHhhhHHHHHHHHhh
Confidence 34455789999999999999999999888888888888889999999999999987 33221 355555
Q ss_pred HHHHHHhCCHHHHHHHHHHHhhccChhh----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHH
Q 001486 365 ARYKEQIGDTSAARAAFPESYIDSDSRF----IEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFS 440 (1070)
Q Consensus 365 a~~e~~~g~~~eA~~~~~~al~~~~p~~----~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A 440 (1070)
+.-..+.|++.+|.++|..+| .++|++ ..+|.+++....++|+..+|+...+.|+++ ++..-+.++.-|
T Consensus 256 gN~~fk~G~y~~A~E~Yteal-~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i------D~syikall~ra 328 (486)
T KOG0550|consen 256 GNDAFKNGNYRKAYECYTEAL-NIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI------DSSYIKALLRRA 328 (486)
T ss_pred hhhHhhccchhHHHHHHHHhh-cCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc------CHHHHHHHHHHH
Confidence 666788999999999999999 677743 567888999999999999999999999998 677788999999
Q ss_pred HHHHhhcCCHHHHHHHHHHHHhhCCC
Q 001486 441 RLTYTTTGSADNARDILIDGIKHVPN 466 (1070)
Q Consensus 441 ~~~~~~~g~~e~Ar~iyekaL~~~P~ 466 (1070)
.+.. ..+++++|+.-|+++++...+
T Consensus 329 ~c~l-~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 329 NCHL-ALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHH-HHHHHHHHHHHHHHHHhhccc
Confidence 9998 999999999999999987665
No 137
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.42 E-value=0.001 Score=86.89 Aligned_cols=250 Identities=10% Similarity=0.023 Sum_probs=163.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccCCC----C--HHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhhhc----h---
Q 001486 292 WHDYLSFAEKQGDFDWVVKLYERCLIPCAD----Y--PEFWMRYVDFMESKGGREIASYALDRATQIFLKRL----P--- 358 (1070)
Q Consensus 292 W~~yi~~~~~~g~~~~a~~~yerAL~~~p~----~--~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~----p--- 358 (1070)
+..++..+...|+++++..+|++++..... . ...+..++..+...|+++.|+..+++++.+..... +
T Consensus 494 ~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~ 573 (903)
T PRK04841 494 TSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHE 573 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHH
Confidence 344555566789999999999999864221 1 12345667788889999999999999998743211 1
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHhhccC----hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHH
Q 001486 359 VIHLFNARYKEQIGDTSAARAAFPESYIDSD----SRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPL 434 (1070)
Q Consensus 359 ~i~~~~a~~e~~~g~~~eA~~~~~~al~~~~----p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~ 434 (1070)
.++...+.+....|++++|+..+.+++.... ......+...+.+....|+++.|...+++++....... ......
T Consensus 574 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~-~~~~~~ 652 (903)
T PRK04841 574 FLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGR-YHSDWI 652 (903)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccc-ccHhHh
Confidence 2344556677778999999999999873211 12344566677788889999999999999988643211 111111
Q ss_pred HHHH--HHHHHHhhcCCHHHHHHHHHHHHhhCCCcH----HHHHHHHHHHHHcCCCcchhHHHHHHHHHhccCCcccccC
Q 001486 435 LYVQ--FSRLTYTTTGSADNARDILIDGIKHVPNCK----LLLEELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVF 508 (1070)
Q Consensus 435 l~i~--~A~~~~~~~g~~e~Ar~iyekaL~~~P~~~----~lw~~y~~~e~~~g~~~~~~~ar~l~ekAl~~~~~~s~~l 508 (1070)
.... .+..+. ..|+.+.|...+........... .++..++......|+..+ +..+|++++..... .+.
T Consensus 653 ~~~~~~~~~~~~-~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~---A~~~l~~al~~~~~--~g~ 726 (903)
T PRK04841 653 ANADKVRLIYWQ-MTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDE---AEIILEELNENARS--LRL 726 (903)
T ss_pred hHHHHHHHHHHH-HCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHHHHH--hCc
Confidence 1111 112223 57899999999877665332221 224556666666776544 56888888753210 011
Q ss_pred ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcc
Q 001486 509 SLEDVEDISSLYLQFLDLCGTIHDIRNAWNQHIKLFPHTVR 549 (1070)
Q Consensus 509 ~~~~~~~l~~~~~~~e~~~G~~~~a~~~~~ra~~~~p~~~~ 549 (1070)
. -........+.......|+.++|..++.+++.++...+.
T Consensus 727 ~-~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~g~ 766 (903)
T PRK04841 727 M-SDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRTGF 766 (903)
T ss_pred h-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCccch
Confidence 1 122344556667778999999999999999999966544
No 138
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=7e-06 Score=88.48 Aligned_cols=117 Identities=12% Similarity=0.029 Sum_probs=103.9
Q ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhC---CHHHHHHHHHHH
Q 001486 23 KQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLC---SIDKVVEVFERA 99 (1070)
Q Consensus 23 ~~~le~~l~~nP~s~~~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P~s~~lW~~ya~~e~~~~---~~e~A~~lferA 99 (1070)
...++..|..||.|.+.|..++..+... ++...|...|++|+++.|+++++|.-|++...... ...++..+|.+|
T Consensus 142 ~a~Le~~L~~nP~d~egW~~Lg~~ym~~--~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~a 219 (287)
T COG4235 142 IARLETHLQQNPGDAEGWDLLGRAYMAL--GRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQA 219 (287)
T ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHh--cchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 4579999999999999999999999888 99999999999999999999999999999876553 457899999999
Q ss_pred HHhcCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHcCCCC
Q 001486 100 VQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDY 142 (1070)
Q Consensus 100 L~~~P~s~~lW~~y~~~~~~~~~~~~~ar~vferAL~~~p~~~ 142 (1070)
|..+|.++..-..|+--+... |++.+|...|+..|+.+|.+-
T Consensus 220 l~~D~~~iral~lLA~~afe~-g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 220 LALDPANIRALSLLAFAAFEQ-GDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HhcCCccHHHHHHHHHHHHHc-ccHHHHHHHHHHHHhcCCCCC
Confidence 999999999777777777777 999999999999999988753
No 139
>KOG3598 consensus Thyroid hormone receptor-associated protein complex, subunit TRAP230 [Transcription]
Probab=98.37 E-value=5.5e-06 Score=101.61 Aligned_cols=12 Identities=17% Similarity=0.299 Sum_probs=7.4
Q ss_pred CcccCCCCcccc
Q 001486 827 NWHEQQNPDRVH 838 (1070)
Q Consensus 827 n~~~~~~~~~~~ 838 (1070)
..|++++.+.++
T Consensus 1963 ~vhq~~p~~~~~ 1974 (2220)
T KOG3598|consen 1963 KVHQRNPLNRKK 1974 (2220)
T ss_pred ceeecCcchHHH
Confidence 466666666654
No 140
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.37 E-value=7.3e-05 Score=88.12 Aligned_cols=136 Identities=15% Similarity=0.188 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhhhchHHHHHHHHHHH
Q 001486 290 KNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKE 369 (1070)
Q Consensus 290 ~~W~~yi~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~ 369 (1070)
..+++|+.+++..+|.+.|+..||++=.. .. ++.-. +. .+-.+++.|-+ ..+++.+|-+|+.+++
T Consensus 859 ~Tyy~yA~~Lear~Di~~AleyyEK~~~h--af-ev~rm----L~---e~p~~~e~Yv~-----~~~d~~L~~WWgqYlE 923 (1416)
T KOG3617|consen 859 NTYYNYAKYLEARRDIEAALEYYEKAGVH--AF-EVFRM----LK---EYPKQIEQYVR-----RKRDESLYSWWGQYLE 923 (1416)
T ss_pred hhHHHHHHHHHhhccHHHHHHHHHhcCCh--HH-HHHHH----HH---hChHHHHHHHH-----hccchHHHHHHHHHHh
Confidence 36778888888888888999999887321 11 11111 11 11122233322 2346789999999999
Q ss_pred HhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhcCC
Q 001486 370 QIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGS 449 (1070)
Q Consensus 370 ~~g~~~eA~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~g~ 449 (1070)
..|+.|.|+.+|..|.. |+....+..-+|+.++|..+-++.=+. -+-..+|+.|+ ..|+
T Consensus 924 S~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~esgd~-----------AAcYhlaR~YE-n~g~ 982 (1416)
T KOG3617|consen 924 SVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEESGDK-----------AACYHLARMYE-NDGD 982 (1416)
T ss_pred cccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhcccH-----------HHHHHHHHHhh-hhHH
Confidence 99999999999998752 555565666678888888776543222 34456788887 8899
Q ss_pred HHHHHHHHHHHH
Q 001486 450 ADNARDILIDGI 461 (1070)
Q Consensus 450 ~e~Ar~iyekaL 461 (1070)
+-+|..+|.||-
T Consensus 983 v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 983 VVKAVKFFTRAQ 994 (1416)
T ss_pred HHHHHHHHHHHH
Confidence 999999888774
No 141
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.36 E-value=4.5e-06 Score=96.02 Aligned_cols=99 Identities=15% Similarity=0.065 Sum_probs=63.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhhhchHHHHHHHHHHHHhCCHH
Q 001486 296 LSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTS 375 (1070)
Q Consensus 296 i~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~ 375 (1070)
+.-....|+++.|+.+|++||...|.+..+|+.+|.++...|++++|+..+++|+.+ .|.++.+|+.+|.++...|+++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l-~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIEL-DPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CcCCHHHHHHHHHHHHHhCCHH
Confidence 333445667777777777777777777777777777777777777777777777665 4555556666666666666666
Q ss_pred HHHHHHHHHhhccChhhHHHH
Q 001486 376 AARAAFPESYIDSDSRFIEKV 396 (1070)
Q Consensus 376 eA~~~~~~al~~~~p~~~~~w 396 (1070)
+|+..|++++ .++|+...+.
T Consensus 88 eA~~~~~~al-~l~P~~~~~~ 107 (356)
T PLN03088 88 TAKAALEKGA-SLAPGDSRFT 107 (356)
T ss_pred HHHHHHHHHH-HhCCCCHHHH
Confidence 6666666666 4555444443
No 142
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.36 E-value=0.0011 Score=86.53 Aligned_cols=175 Identities=15% Similarity=0.080 Sum_probs=121.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccCC-----CCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhhhc-hHHHHH--
Q 001486 292 WHDYLSFAEKQGDFDWVVKLYERCLIPCA-----DYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRL-PVIHLF-- 363 (1070)
Q Consensus 292 W~~yi~~~~~~g~~~~a~~~yerAL~~~p-----~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~-p~i~~~-- 363 (1070)
+...+..+...|++++|...+++++.... .....+..++.++...|+++.|...++++..+..... ...+..
T Consensus 576 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~ 655 (903)
T PRK04841 576 LRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANA 655 (903)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHH
Confidence 34455556667999999999999986422 1234456678888899999999999999987632211 111111
Q ss_pred ---HHHHHHHhCCHHHHHHHHHHHhhccCh---hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHH
Q 001486 364 ---NARYKEQIGDTSAARAAFPESYIDSDS---RFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYV 437 (1070)
Q Consensus 364 ---~a~~e~~~g~~~eA~~~~~~al~~~~p---~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i 437 (1070)
........|+.+.|..++......... .....+...+.++...|++++|..+|++++..............+++
T Consensus 656 ~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~ 735 (903)
T PRK04841 656 DKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLI 735 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHH
Confidence 112334578999999988776521111 11223556777888899999999999999997543322223456778
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHhhCCCc
Q 001486 438 QFSRLTYTTTGSADNARDILIDGIKHVPNC 467 (1070)
Q Consensus 438 ~~A~~~~~~~g~~e~Ar~iyekaL~~~P~~ 467 (1070)
.+|.++. ..|+.++|+..+++|++.....
T Consensus 736 ~la~a~~-~~G~~~~A~~~L~~Al~la~~~ 764 (903)
T PRK04841 736 LLNQLYW-QQGRKSEAQRVLLEALKLANRT 764 (903)
T ss_pred HHHHHHH-HcCCHHHHHHHHHHHHHHhCcc
Confidence 8899987 9999999999999999987543
No 143
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.31 E-value=5.8e-06 Score=73.68 Aligned_cols=98 Identities=18% Similarity=0.197 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHH
Q 001486 360 IHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQF 439 (1070)
Q Consensus 360 i~~~~a~~e~~~g~~~eA~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~ 439 (1070)
+|+..+..+...|++++|..+|.+++ ...+....+|..++.++...|++++|+.+|+++++. .+....++..+
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~ 74 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKAL-ELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL------DPDNAKAYYNL 74 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHH-hcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------CCcchhHHHHH
Confidence 34555566666777777777777776 444555566777777777777777777777777776 35555677777
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHhhCC
Q 001486 440 SRLTYTTTGSADNARDILIDGIKHVP 465 (1070)
Q Consensus 440 A~~~~~~~g~~e~Ar~iyekaL~~~P 465 (1070)
|.++. ..|++++|+.+|+++++.+|
T Consensus 75 ~~~~~-~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 75 GLAYY-KLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHHH-HHHhHHHHHHHHHHHHccCC
Confidence 77776 77777777777777777665
No 144
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.26 E-value=3.6e-05 Score=85.83 Aligned_cols=139 Identities=16% Similarity=0.117 Sum_probs=98.2
Q ss_pred HHHHHHHHHhhCChhHHHHHHHHHHHHHhhh-c----hHHHHHHHHHHHHh-CCHHHHHHHHHHHhhccC-----hhhHH
Q 001486 326 WMRYVDFMESKGGREIASYALDRATQIFLKR-L----PVIHLFNARYKEQI-GDTSAARAAFPESYIDSD-----SRFIE 394 (1070)
Q Consensus 326 W~~ya~~l~~~g~~e~A~~il~rAl~~~~~~-~----p~i~~~~a~~e~~~-g~~~eA~~~~~~al~~~~-----p~~~~ 394 (1070)
|...+.++.+. ++++|+..|++|+.++... . ..++...|.+++.. |++++|++.|.+|++.+. .....
T Consensus 78 ~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~ 156 (282)
T PF14938_consen 78 YEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAE 156 (282)
T ss_dssp HHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHH
Confidence 44445555444 8899999999999986532 1 24677778888887 999999999999984321 13356
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcc-CCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCC
Q 001486 395 KVTFKANMERRLGNFVAACDTYKEALETAAEQRK-FHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPN 466 (1070)
Q Consensus 395 ~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~-~~~~~~l~i~~A~~~~~~~g~~e~Ar~iyekaL~~~P~ 466 (1070)
++...+.++.+.|++++|+.+|++.+........ ....-..++..+.+.. ..||+..|++.|++....+|.
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L-~~~D~v~A~~~~~~~~~~~~~ 228 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHL-AMGDYVAARKALERYCSQDPS 228 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHH-HTT-HHHHHHHHHHHGTTSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCC
Confidence 6788999999999999999999999886322211 1112245666666666 899999999999999988774
No 145
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.26 E-value=1.5e-05 Score=75.79 Aligned_cols=106 Identities=15% Similarity=0.119 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHhhccChhh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHH
Q 001486 359 VIHLFNARYKEQIGDTSAARAAFPESYIDSDSRF---IEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLL 435 (1070)
Q Consensus 359 ~i~~~~a~~e~~~g~~~eA~~~~~~al~~~~p~~---~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l 435 (1070)
.+++..+....+.|++++|...|.+++ ...|++ ..+++.++.++...|+++.|..+|++++...+ ..+..+.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p---~~~~~~~~ 78 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFL-KKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYP---KSPKAPDA 78 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH-HHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCC---CCCcccHH
Confidence 456677777788888888888888887 333332 45677888888888999999999999988731 12234677
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHH
Q 001486 436 YVQFSRLTYTTTGSADNARDILIDGIKHVPNCKL 469 (1070)
Q Consensus 436 ~i~~A~~~~~~~g~~e~Ar~iyekaL~~~P~~~~ 469 (1070)
+..+|.++. ..|++++|.++|+++++.+|++..
T Consensus 79 ~~~~~~~~~-~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 79 LLKLGMSLQ-ELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HHHHHHHHH-HhCChHHHHHHHHHHHHHCcCChh
Confidence 888888887 889999999999999999988764
No 146
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.24 E-value=9.7e-06 Score=72.20 Aligned_cols=98 Identities=12% Similarity=0.093 Sum_probs=85.1
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 001486 39 EWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSM 118 (1070)
Q Consensus 39 ~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P~s~~lW~~ya~~e~~~~~~e~A~~lferAL~~~P~s~~lW~~y~~~~~ 118 (1070)
.|..++..+... +++++|..+|+++++..|.+...|..++..+...+++++|..+|++++...|.+..+|..++.++.
T Consensus 2 ~~~~~a~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (100)
T cd00189 2 ALLNLGNLYYKL--GDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHH--hcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Confidence 466777766666 889999999999999999998999999999988899999999999999999999899999998888
Q ss_pred hhCCChhHHHHHHHHHHHHcC
Q 001486 119 STFEDPNDVRRLFKRALSFVG 139 (1070)
Q Consensus 119 ~~~~~~~~ar~vferAL~~~p 139 (1070)
.. ++++.|+..|+++++..|
T Consensus 80 ~~-~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 80 KL-GKYEEALEAYEKALELDP 99 (100)
T ss_pred HH-HhHHHHHHHHHHHHccCC
Confidence 88 889999999998886543
No 147
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.23 E-value=4e-05 Score=76.42 Aligned_cols=117 Identities=18% Similarity=0.107 Sum_probs=97.9
Q ss_pred HcCCHHHHHHHHHHHhccCCCC---HHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhhhc---hHHHHHHHHHHHHhCCH
Q 001486 301 KQGDFDWVVKLYERCLIPCADY---PEFWMRYVDFMESKGGREIASYALDRATQIFLKRL---PVIHLFNARYKEQIGDT 374 (1070)
Q Consensus 301 ~~g~~~~a~~~yerAL~~~p~~---~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~---p~i~~~~a~~e~~~g~~ 374 (1070)
..++...+...+++.+...|.. ...++.+|..+...|++++|...|++++... ++. +.+++.++.++...|++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-~d~~l~~~a~l~LA~~~~~~~~~ 101 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA-PDPELKPLARLRLARILLQQGQY 101 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-CCHHHHHHHHHHHHHHHHHcCCH
Confidence 3678888999999999988887 5678889999999999999999999999863 222 35777888999999999
Q ss_pred HHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001486 375 SAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEAL 420 (1070)
Q Consensus 375 ~eA~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~vyekal 420 (1070)
++|+..+.... -.+-...++...++++...|++++|+..|++||
T Consensus 102 d~Al~~L~~~~--~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 102 DEALATLQQIP--DEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHhcc--CcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 99999997643 233345578889999999999999999999985
No 148
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.16 E-value=8.8e-06 Score=69.70 Aligned_cols=66 Identities=15% Similarity=0.140 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhcC-CHHHHHHHHHHHHhhCC
Q 001486 393 IEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTG-SADNARDILIDGIKHVP 465 (1070)
Q Consensus 393 ~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~g-~~e~Ar~iyekaL~~~P 465 (1070)
..+|...|.++...|++++|+..|+++++. .|.++.+|.++|.++. ..| ++++|++.|+++|+++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~------~p~~~~~~~~~g~~~~-~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL------DPNNAEAYYNLGLAYM-KLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH------STTHHHHHHHHHHHHH-HTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCCHHHHHHHHHHHH-HhCccHHHHHHHHHHHHHcCc
Confidence 467888888888888888888888888888 6788888888888887 777 68888888888888876
No 149
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.10 E-value=0.021 Score=67.15 Aligned_cols=32 Identities=22% Similarity=0.292 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Q 001486 514 EDISSLYLQFLDLCGTIHDIRNAWNQHIKLFP 545 (1070)
Q Consensus 514 ~~l~~~~~~~e~~~G~~~~a~~~~~ra~~~~p 545 (1070)
..+...|..|.++-|.+++|.+.|-.++++.-
T Consensus 995 ~~vhlk~a~~ledegk~edaskhyveaiklnt 1026 (1636)
T KOG3616|consen 995 GEVHLKLAMFLEDEGKFEDASKHYVEAIKLNT 1026 (1636)
T ss_pred ccchhHHhhhhhhccchhhhhHhhHHHhhccc
Confidence 45678889999999999999999999998753
No 150
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.06 E-value=7.8e-05 Score=70.87 Aligned_cols=102 Identities=9% Similarity=0.046 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcCCC---HHHH
Q 001486 37 FDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLC---YGYWRKYADHKARLCSIDKVVEVFERAVQSATYS---VDVW 110 (1070)
Q Consensus 37 ~~~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P~s---~~lW~~ya~~e~~~~~~e~A~~lferAL~~~P~s---~~lW 110 (1070)
.+.++..+..+... +++++|...|++++..+|++ ...+..++..+.+.++++.|..+|++++..+|.+ ..+|
T Consensus 2 ~~~~~~~~~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~ 79 (119)
T TIGR02795 2 EEAYYDAALLVLKA--GDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDAL 79 (119)
T ss_pred cHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHH
Confidence 35677777777776 89999999999999999887 5688889999999999999999999999988775 6788
Q ss_pred HHHHHHHHhhCCChhHHHHHHHHHHHHcCCC
Q 001486 111 FHYCSLSMSTFEDPNDVRRLFKRALSFVGKD 141 (1070)
Q Consensus 111 ~~y~~~~~~~~~~~~~ar~vferAL~~~p~~ 141 (1070)
..++..+... ++.++|.+.|+++++..|.+
T Consensus 80 ~~~~~~~~~~-~~~~~A~~~~~~~~~~~p~~ 109 (119)
T TIGR02795 80 LKLGMSLQEL-GDKEKAKATLQQVIKRYPGS 109 (119)
T ss_pred HHHHHHHHHh-CChHHHHHHHHHHHHHCcCC
Confidence 8888888888 99999999999999987764
No 151
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=6.1e-05 Score=81.35 Aligned_cols=118 Identities=19% Similarity=0.118 Sum_probs=106.1
Q ss_pred CHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhhhchHHHHHHHHHHHHhC---CHHHHHHH
Q 001486 304 DFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIG---DTSAARAA 380 (1070)
Q Consensus 304 ~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g---~~~eA~~~ 380 (1070)
+.++.+.-.+.-|..+|.+.+-|..+|.+|...|+++.|...|.+|+++ .+++|.++..|++.+.... ...+++.+
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL-~g~n~~~~~g~aeaL~~~a~~~~ta~a~~l 215 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRL-AGDNPEILLGLAEALYYQAGQQMTAKARAL 215 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 4677888889999999999999999999999999999999999999998 8899999999999765533 34689999
Q ss_pred HHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 001486 381 FPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETA 423 (1070)
Q Consensus 381 ~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~ 423 (1070)
|++++ ..+|..++....++.-+...|++.+|...++..++..
T Consensus 216 l~~al-~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 216 LRQAL-ALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHH-hcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 99999 7899999998888888888999999999999999985
No 152
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.03 E-value=1.4e-05 Score=67.50 Aligned_cols=64 Identities=19% Similarity=0.246 Sum_probs=45.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcH
Q 001486 398 FKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCK 468 (1070)
Q Consensus 398 ~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~g~~e~Ar~iyekaL~~~P~~~ 468 (1070)
..+..+...|++++|+.+|+++++. .|.++.+|..+|.++. ..|++++|+.+|+++++.+|+++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~------~P~~~~a~~~lg~~~~-~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQ------DPDNPEAWYLLGRILY-QQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCC------STTHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHH------CCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCcCCC
Confidence 3455666777777777777777776 5677777777777777 77777777777777777777653
No 153
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.03 E-value=9.8e-05 Score=75.91 Aligned_cols=121 Identities=14% Similarity=0.061 Sum_probs=88.3
Q ss_pred CCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhhh---chHHHHHHHHHHHHhCCHHHHHHHHHHHhhccChhhHHH
Q 001486 319 CADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKR---LPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEK 395 (1070)
Q Consensus 319 ~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~---~p~i~~~~a~~e~~~g~~~eA~~~~~~al~~~~p~~~~~ 395 (1070)
.+....+++.+|..+...|++++|...|++|+.+ .++ ...+|..+|.++...|++++|+..|.+++ ...|.....
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~p~~~~~ 108 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKL-EEDPNDRSYILYNMGIIYASNGEHDKALEYYHQAL-ELNPKQPSA 108 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-hhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCcccHHH
Confidence 3455667788888888888888888888888876 222 13467777777778888888888888887 566767777
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcH
Q 001486 396 VTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCK 468 (1070)
Q Consensus 396 w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~g~~e~Ar~iyekaL~~~P~~~ 468 (1070)
|..++.++...|....+..-+++|+.. +++|.++|+++++..|++.
T Consensus 109 ~~~lg~~~~~~g~~~~a~~~~~~A~~~---------------------------~~~A~~~~~~a~~~~p~~~ 154 (172)
T PRK02603 109 LNNIAVIYHKRGEKAEEAGDQDEAEAL---------------------------FDKAAEYWKQAIRLAPNNY 154 (172)
T ss_pred HHHHHHHHHHcCChHhHhhCHHHHHHH---------------------------HHHHHHHHHHHHhhCchhH
Confidence 777777777777776666555544332 4678899999999999874
No 154
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.02 E-value=0.00052 Score=74.41 Aligned_cols=170 Identities=15% Similarity=0.139 Sum_probs=119.1
Q ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhhhchHHHHH
Q 001486 284 LDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLF 363 (1070)
Q Consensus 284 ~~p~~~~~W~~yi~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~ 363 (1070)
...+.+..|+.+..|. .|++++|..+|+-+....--..++|+.+|..+.-.|.+.+|..+..+|-+. |-+-.+.+.
T Consensus 54 EEE~~~~lWia~C~fh--LgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~--pL~~RLlfh 129 (557)
T KOG3785|consen 54 EEEDSLQLWIAHCYFH--LGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKT--PLCIRLLFH 129 (557)
T ss_pred hhhHHHHHHHHHHHHh--hccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCC--hHHHHHHHH
Confidence 3456889999988886 799999999999999876667899999999888889999998888777542 111112222
Q ss_pred HHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHH
Q 001486 364 NARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLT 443 (1070)
Q Consensus 364 ~a~~e~~~g~~~eA~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~ 443 (1070)
+-.+.++-++-. .|...+. +..+--+.++.+....-.+.+|+++|++.+.. .+..-.+-+.+|.++
T Consensus 130 ---lahklndEk~~~-~fh~~Lq----D~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d------n~ey~alNVy~ALCy 195 (557)
T KOG3785|consen 130 ---LAHKLNDEKRIL-TFHSSLQ----DTLEDQLSLASVHYMRMHYQEAIDVYKRVLQD------NPEYIALNVYMALCY 195 (557)
T ss_pred ---HHHHhCcHHHHH-HHHHHHh----hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc------ChhhhhhHHHHHHHH
Confidence 223444433322 2333221 22222333444444445689999999999886 455555667778888
Q ss_pred HhhcCCHHHHHHHHHHHHhhCCCcHHHHH
Q 001486 444 YTTTGSADNARDILIDGIKHVPNCKLLLE 472 (1070)
Q Consensus 444 ~~~~g~~e~Ar~iyekaL~~~P~~~~lw~ 472 (1070)
+ ..+.++.+.+++.--|..+|+++-...
T Consensus 196 y-KlDYydvsqevl~vYL~q~pdStiA~N 223 (557)
T KOG3785|consen 196 Y-KLDYYDVSQEVLKVYLRQFPDSTIAKN 223 (557)
T ss_pred H-hcchhhhHHHHHHHHHHhCCCcHHHHH
Confidence 7 999999999999999999999875443
No 155
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.01 E-value=0.042 Score=64.83 Aligned_cols=274 Identities=15% Similarity=0.106 Sum_probs=127.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc-----cCCCCC----CCChHH-HHHHHHHHHHHHHcCCHHHHHHHHHHH------
Q 001486 252 IGEQIYKEASQLDEKINCFENLIRR-----PYFHVK----PLDDIQ-LKNWHDYLSFAEKQGDFDWVVKLYERC------ 315 (1070)
Q Consensus 252 ~~~~~y~~a~~~~~~~~~fE~ai~~-----~~~~~~----~~~p~~-~~~W~~yi~~~~~~g~~~~a~~~yerA------ 315 (1070)
+...+|++|.++++++..|.++++- .|.... -..|.. +.+=..+++.+...|.++.|+..|-.|
T Consensus 659 ik~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~~ka 738 (1636)
T KOG3616|consen 659 IKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKA 738 (1636)
T ss_pred HhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHH
Confidence 3556788888887777777766531 000000 012222 233334455555566666665554322
Q ss_pred ----hcc--------------CC-CCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhhhchHHHHHHHHHHHHhCCHHH
Q 001486 316 ----LIP--------------CA-DYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSA 376 (1070)
Q Consensus 316 ----L~~--------------~p-~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~e 376 (1070)
+.. +. .....|-..+..|...|+++.|.++|.+|-.. .-...++-+.|+++.
T Consensus 739 ieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~~---------~dai~my~k~~kw~d 809 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEADLF---------KDAIDMYGKAGKWED 809 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcchh---------HHHHHHHhccccHHH
Confidence 110 00 01122334455566666777777666554321 011123334555555
Q ss_pred HHHHHHHHhhccChhhHHHHHHHHHHHHHcCCH-------------HHHHHHHHH------HHHHHHhhccCCCcHHHHH
Q 001486 377 ARAAFPESYIDSDSRFIEKVTFKANMERRLGNF-------------VAACDTYKE------ALETAAEQRKFHTLPLLYV 437 (1070)
Q Consensus 377 A~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~-------------~~A~~vyek------al~~~~~~~~~~~~~~l~i 437 (1070)
|-++-++.. -.......|+..+.=..+.|.+ +.|+.+|++ .|.++ .+.+.........
T Consensus 810 a~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv-~k~h~d~l~dt~~ 886 (1636)
T KOG3616|consen 810 AFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLV-EKHHGDHLHDTHK 886 (1636)
T ss_pred HHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHH-HHhChhhhhHHHH
Confidence 544444332 1112333444444333333333 334444332 22222 1111223445667
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHhhC-----CCcHHHHHHHHHHHHHcCCCcchhHHHHHHHHHhccCCcccccCChhh
Q 001486 438 QFSRLTYTTTGSADNARDILIDGIKHV-----PNCKLLLEELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLED 512 (1070)
Q Consensus 438 ~~A~~~~~~~g~~e~Ar~iyekaL~~~-----P~~~~lw~~y~~~e~~~g~~~~~~~ar~l~ekAl~~~~~~s~~l~~~~ 512 (1070)
.+|.-++ ..|++..|...|-+|-... -....+|....++.+..|+...-..+.-+.-+.+- . ......-.
T Consensus 887 ~f~~e~e-~~g~lkaae~~flea~d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksig--g--daavklln 961 (1636)
T KOG3616|consen 887 HFAKELE-AEGDLKAAEEHFLEAGDFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIG--G--DAAVKLLN 961 (1636)
T ss_pred HHHHHHH-hccChhHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhC--c--HHHHHHHH
Confidence 7888776 8899999988876654321 12346888777777766654321111122222221 0 00000011
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 001486 513 VEDISSLYLQFLDLCGTIHDIRNAWNQHIK 542 (1070)
Q Consensus 513 ~~~l~~~~~~~e~~~G~~~~a~~~~~ra~~ 542 (1070)
...+.+..++|.-+.|.++-|..+-+-+.+
T Consensus 962 k~gll~~~id~a~d~~afd~afdlari~~k 991 (1636)
T KOG3616|consen 962 KHGLLEAAIDFAADNCAFDFAFDLARIAAK 991 (1636)
T ss_pred hhhhHHHHhhhhhcccchhhHHHHHHHhhh
Confidence 223455566666666666666665544443
No 156
>PRK11906 transcriptional regulator; Provisional
Probab=98.01 E-value=0.00016 Score=82.66 Aligned_cols=149 Identities=10% Similarity=0.005 Sum_probs=117.4
Q ss_pred HHHHHHHHHHHh---ccCCCCHHHHHHHHHHHHhh---C------ChhHHHHHHHHHHHHHhhhchHHHHHHHHHHHHhC
Q 001486 305 FDWVVKLYERCL---IPCADYPEFWMRYVDFMESK---G------GREIASYALDRATQIFLKRLPVIHLFNARYKEQIG 372 (1070)
Q Consensus 305 ~~~a~~~yerAL---~~~p~~~~lW~~ya~~l~~~---g------~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g 372 (1070)
.++|..+|++|+ ..+|.+...|..+|.+++.. | ...+|+...+||+++ .+.++.+....|....-.+
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAvel-d~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDI-TTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHhhc
Confidence 567889999999 88999988877777655543 2 246788999999997 7788888888888888888
Q ss_pred CHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHH--HHHHHHHHhhcCCH
Q 001486 373 DTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLY--VQFSRLTYTTTGSA 450 (1070)
Q Consensus 373 ~~~eA~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~--i~~A~~~~~~~g~~ 450 (1070)
+++.|..+|++|+ .++|++..+|+..+.+..-.|+.++|+..+++|+.+ .|....+- -.|-.+| ....+
T Consensus 353 ~~~~a~~~f~rA~-~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL------sP~~~~~~~~~~~~~~~--~~~~~ 423 (458)
T PRK11906 353 QAKVSHILFEQAK-IHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQL------EPRRRKAVVIKECVDMY--VPNPL 423 (458)
T ss_pred chhhHHHHHHHHh-hcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc------CchhhHHHHHHHHHHHH--cCCch
Confidence 8999999999999 899999999999999888899999999999999998 44332221 1111123 57788
Q ss_pred HHHHHHHHHHHhh
Q 001486 451 DNARDILIDGIKH 463 (1070)
Q Consensus 451 e~Ar~iyekaL~~ 463 (1070)
++|.++|-+-.+.
T Consensus 424 ~~~~~~~~~~~~~ 436 (458)
T PRK11906 424 KNNIKLYYKETES 436 (458)
T ss_pred hhhHHHHhhcccc
Confidence 8888888665443
No 157
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.00 E-value=0.00017 Score=86.54 Aligned_cols=86 Identities=14% Similarity=0.013 Sum_probs=65.5
Q ss_pred HHHHHHHHHhhc-cChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhcCCHHHHH
Q 001486 376 AARAAFPESYID-SDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNAR 454 (1070)
Q Consensus 376 eA~~~~~~al~~-~~p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~g~~e~Ar 454 (1070)
.+.....+++.. .++....++..++......|++++|...|++|+++ .+ ++..|+.+|.++. ..|+.++|.
T Consensus 402 ~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L------~p-s~~a~~~lG~~~~-~~G~~~eA~ 473 (517)
T PRK10153 402 ALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL------EM-SWLNYVLLGKVYE-LKGDNRLAA 473 (517)
T ss_pred HHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CC-CHHHHHHHHHHHH-HcCCHHHHH
Confidence 444444454421 23444566776776666779999999999999998 55 5789999999988 999999999
Q ss_pred HHHHHHHhhCCCcHH
Q 001486 455 DILIDGIKHVPNCKL 469 (1070)
Q Consensus 455 ~iyekaL~~~P~~~~ 469 (1070)
..|++|+.++|..+.
T Consensus 474 ~~~~~A~~L~P~~pt 488 (517)
T PRK10153 474 DAYSTAFNLRPGENT 488 (517)
T ss_pred HHHHHHHhcCCCCch
Confidence 999999999998664
No 158
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.98 E-value=0.0001 Score=88.38 Aligned_cols=141 Identities=17% Similarity=0.034 Sum_probs=106.5
Q ss_pred hHHHHHHHHHHHH--HHHcC---CHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhC--------ChhHHHHHHHHHHHH
Q 001486 286 DIQLKNWHDYLSF--AEKQG---DFDWVVKLYERCLIPCADYPEFWMRYVDFMESKG--------GREIASYALDRATQI 352 (1070)
Q Consensus 286 p~~~~~W~~yi~~--~~~~g---~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g--------~~e~A~~il~rAl~~ 352 (1070)
|.+.+.|-.|..- +...+ +..+|+.+|++|+..+|++..+|-.++..+.... +.+.+...+++++.+
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al 413 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL 413 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc
Confidence 4555666666543 22233 3678999999999999999998888766554332 134455555565553
Q ss_pred H-hhhchHHHHHHHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCC
Q 001486 353 F-LKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHT 431 (1070)
Q Consensus 353 ~-~~~~p~i~~~~a~~e~~~g~~~eA~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~ 431 (1070)
. .+..+.+|..++......|++++|...|++|+ .+++ +...|+.++.++...|+.++|.+.|++|+.+ .|.
T Consensus 414 ~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl-~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L------~P~ 485 (517)
T PRK10153 414 PELNVLPRIYEILAVQALVKGKTDEAYQAINKAI-DLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNL------RPG 485 (517)
T ss_pred ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHH-HcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCC
Confidence 1 33456788888888888999999999999999 7777 4778999999999999999999999999998 566
Q ss_pred cHH
Q 001486 432 LPL 434 (1070)
Q Consensus 432 ~~~ 434 (1070)
.+.
T Consensus 486 ~pt 488 (517)
T PRK10153 486 ENT 488 (517)
T ss_pred Cch
Confidence 554
No 159
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.97 E-value=0.0001 Score=75.43 Aligned_cols=84 Identities=12% Similarity=0.010 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhh--hchHHHHHHHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHH
Q 001486 323 PEFWMRYVDFMESKGGREIASYALDRATQIFLK--RLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKA 400 (1070)
Q Consensus 323 ~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~--~~p~i~~~~a~~e~~~g~~~eA~~~~~~al~~~~p~~~~~w~~~a 400 (1070)
..+|+..|..+...|++++|...|++|+.+... ..+.+|+.+|.++...|++++|+..|++++ .+.+.....|...+
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al-~~~~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQAL-ERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCcCcHHHHHHHH
Confidence 567788888888888888888888888776221 123477777888888888888888888887 56666666677776
Q ss_pred HHHHHcC
Q 001486 401 NMERRLG 407 (1070)
Q Consensus 401 ~le~~~g 407 (1070)
.++...|
T Consensus 114 ~i~~~~~ 120 (168)
T CHL00033 114 VICHYRG 120 (168)
T ss_pred HHHHHhh
Confidence 6666443
No 160
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=0.00011 Score=81.98 Aligned_cols=101 Identities=18% Similarity=0.078 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHH
Q 001486 395 KVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLLLEEL 474 (1070)
Q Consensus 395 ~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~g~~e~Ar~iyekaL~~~P~~~~lw~~y 474 (1070)
++.+++.++.+++.+..|+....++|.. .+.+.++.+.-|+++. ..|+++.||..|.++++..|.|.++-..+
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~------~~~N~KALyRrG~A~l-~~~e~~~A~~df~ka~k~~P~Nka~~~el 331 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLEL------DPNNVKALYRRGQALL-ALGEYDLARDDFQKALKLEPSNKAARAEL 331 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhc------CCCchhHHHHHHHHHH-hhccHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 3555666666777777777777777777 6677777777777776 77777777777777777777777776666
Q ss_pred HHHHHHcCCCcchhHHHHHHHHHhccCCcc
Q 001486 475 IKFTMVHGGRSHISIVDAVISNALYSRPDV 504 (1070)
Q Consensus 475 ~~~e~~~g~~~~~~~ar~l~ekAl~~~~~~ 504 (1070)
+.+-.+.-.... +.+.+|.+.+.+..+.
T Consensus 332 ~~l~~k~~~~~~--kekk~y~~mF~k~~~~ 359 (397)
T KOG0543|consen 332 IKLKQKIREYEE--KEKKMYANMFAKLAEE 359 (397)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHhhccccc
Confidence 666554432222 2456666666655433
No 161
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.96 E-value=0.00036 Score=69.50 Aligned_cols=115 Identities=8% Similarity=0.072 Sum_probs=95.4
Q ss_pred CcHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHhhCCChhH
Q 001486 53 DDIEMIGLVYDSFLAEFPLC---YGYWRKYADHKARLCSIDKVVEVFERAVQSATYS---VDVWFHYCSLSMSTFEDPND 126 (1070)
Q Consensus 53 ~~~~~a~~vyeraL~~~P~s---~~lW~~ya~~e~~~~~~e~A~~lferAL~~~P~s---~~lW~~y~~~~~~~~~~~~~ 126 (1070)
++..++...++++++.+|++ ...++.++......|++++|..+|++++...+.. ..+++.++.+++.. +++++
T Consensus 25 ~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~-~~~d~ 103 (145)
T PF09976_consen 25 GDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQ-GQYDE 103 (145)
T ss_pred CCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHc-CCHHH
Confidence 78889999999999999999 5567777888889999999999999999986443 24677788888888 99999
Q ss_pred HHHHHHHHHHHcCCCCCchHHHHHHHHHHHHcccHHHHHHHHHHHH
Q 001486 127 VRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTL 172 (1070)
Q Consensus 127 ar~vferAL~~~p~~~~s~~lW~~yi~fe~~~~~~~~a~~iy~raL 172 (1070)
|..+++.. .+..+ ...+|....+.....|+.+.|+..|+++|
T Consensus 104 Al~~L~~~---~~~~~-~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 104 ALATLQQI---PDEAF-KALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHhc---cCcch-HHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 99999662 12222 46788888899999999999999999875
No 162
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.95 E-value=4.3e-05 Score=65.38 Aligned_cols=67 Identities=15% Similarity=0.148 Sum_probs=50.4
Q ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHhcC
Q 001486 36 DFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLC-SIDKVVEVFERAVQSAT 104 (1070)
Q Consensus 36 s~~~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P~s~~lW~~ya~~e~~~~-~~e~A~~lferAL~~~P 104 (1070)
+...|..++..+... +++++|...|+++++.+|+++.+|..++..+...+ ++++|+..|++||+..|
T Consensus 2 ~a~~~~~~g~~~~~~--~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQ--GDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHT--THHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 456777777777666 77777777777777777777777777777777777 57777777777777765
No 163
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.94 E-value=0.00014 Score=80.97 Aligned_cols=194 Identities=13% Similarity=0.119 Sum_probs=133.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-C-CCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhhhchHHHHHHHH
Q 001486 289 LKNWHDYLSFAEKQGDFDWVVKLYERCLIPC-A-DYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNAR 366 (1070)
Q Consensus 289 ~~~W~~yi~~~~~~g~~~~a~~~yerAL~~~-p-~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~ 366 (1070)
...+..|+.|+....+.+.++..++..+... . .+..+-+..|.++...|++++|+.++.++- ..+.......
T Consensus 66 l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~~------~lE~~al~Vq 139 (290)
T PF04733_consen 66 LQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKGG------SLELLALAVQ 139 (290)
T ss_dssp CHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTTT------CHHHHHHHHH
T ss_pred HHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHccC------cccHHHHHHH
Confidence 3456666777655456666776666665432 2 334455556677777898999988887652 2344455667
Q ss_pred HHHHhCCHHHHHHHHHHHhhccChhhH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHH
Q 001486 367 YKEQIGDTSAARAAFPESYIDSDSRFI--EKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTY 444 (1070)
Q Consensus 367 ~e~~~g~~~eA~~~~~~al~~~~p~~~--~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~ 444 (1070)
++.+.+++|.|.+.++++. ..+.+.+ .+.-.|..+..-.+.+.+|.-+|++..+. .+.++.+....|.+..
T Consensus 140 i~L~~~R~dlA~k~l~~~~-~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~------~~~t~~~lng~A~~~l 212 (290)
T PF04733_consen 140 ILLKMNRPDLAEKELKNMQ-QIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK------FGSTPKLLNGLAVCHL 212 (290)
T ss_dssp HHHHTT-HHHHHHHHHHHH-CCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC------S--SHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHH-hcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc------cCCCHHHHHHHHHHHH
Confidence 7889999999999999876 4544332 22233333333334689999999997665 4667899999999887
Q ss_pred hhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCCcchhHHHHHHHHHh
Q 001486 445 TTTGSADNARDILIDGIKHVPNCKLLLEELIKFTMVHGGRSHISIVDAVISNAL 498 (1070)
Q Consensus 445 ~~~g~~e~Ar~iyekaL~~~P~~~~lw~~y~~~e~~~g~~~~~~~ar~l~ekAl 498 (1070)
..|++++|.++++.++..+|++++++.+.+.+....|+.... ++..+....
T Consensus 213 -~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~--~~~~l~qL~ 263 (290)
T PF04733_consen 213 -QLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEA--AERYLSQLK 263 (290)
T ss_dssp -HCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHH--HHHHHHHCH
T ss_pred -HhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhH--HHHHHHHHH
Confidence 999999999999999999999999999999998888877432 345555544
No 164
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.91 E-value=0.00017 Score=83.01 Aligned_cols=120 Identities=13% Similarity=0.012 Sum_probs=104.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhhhchHHHHHHHHHHHHhCC
Q 001486 294 DYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGD 373 (1070)
Q Consensus 294 ~yi~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~ 373 (1070)
.++.++...++++.|+.+|++.....| ++++.+|+++...++..+|..++.+++.. .|.+..++...+.|+...++
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~p---ev~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERDP---EVAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcCC---cHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCC
Confidence 345555667889999999999988776 47777899998888889999999999976 55667788889999999999
Q ss_pred HHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001486 374 TSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKE 418 (1070)
Q Consensus 374 ~~eA~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~vyek 418 (1070)
++.|+.+.++++ .+.|+..+.|..++.++...|+++.|..++..
T Consensus 250 ~~lAL~iAk~av-~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs 293 (395)
T PF09295_consen 250 YELALEIAKKAV-ELSPSEFETWYQLAECYIQLGDFENALLALNS 293 (395)
T ss_pred HHHHHHHHHHHH-HhCchhHHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence 999999999999 78899999999999999999999999877653
No 165
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.90 E-value=3.5e-05 Score=68.90 Aligned_cols=79 Identities=22% Similarity=0.269 Sum_probs=38.4
Q ss_pred CCHHHHHHHHHHHhccCCC--CHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhhhchHHHHHHHHHHHHhCCHHHHHHH
Q 001486 303 GDFDWVVKLYERCLIPCAD--YPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAA 380 (1070)
Q Consensus 303 g~~~~a~~~yerAL~~~p~--~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~eA~~~ 380 (1070)
|+++.|+.+|++++...|. +..+|+.+|.++.+.|++++|..++++ ... .+....+++.+|..+...|++++|+++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~-~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKL-DPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH-HHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC-CCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 4555555555555554442 334455555555555555555555555 222 222333444445555555555555555
Q ss_pred HHH
Q 001486 381 FPE 383 (1070)
Q Consensus 381 ~~~ 383 (1070)
|++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 544
No 166
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.90 E-value=4.3e-05 Score=65.15 Aligned_cols=63 Identities=13% Similarity=0.005 Sum_probs=56.8
Q ss_pred CcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 001486 53 DDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCS 115 (1070)
Q Consensus 53 ~~~~~a~~vyeraL~~~P~s~~lW~~ya~~e~~~~~~e~A~~lferAL~~~P~s~~lW~~y~~ 115 (1070)
+++++|..+|++++..+|++.++|..++..+.+.|++++|+.+|++++...|.+..+|..+++
T Consensus 5 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 5 GDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp THHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 789999999999999999999999999999999999999999999999999988888877665
No 167
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.90 E-value=0.00022 Score=78.01 Aligned_cols=95 Identities=12% Similarity=0.068 Sum_probs=66.0
Q ss_pred HhCCHHHHHHHHHHHhhccChhh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhh
Q 001486 370 QIGDTSAARAAFPESYIDSDSRF---IEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTT 446 (1070)
Q Consensus 370 ~~g~~~eA~~~~~~al~~~~p~~---~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~ 446 (1070)
+.|++++|+..|++.+ ...|+. ..+++.++.++...|++++|+..|+++++.++ ..+..+.+++.+|.++. .
T Consensus 155 ~~~~y~~Ai~af~~fl-~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP---~s~~~~dAl~klg~~~~-~ 229 (263)
T PRK10803 155 DKSRQDDAIVAFQNFV-KKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYP---KSPKAADAMFKVGVIMQ-D 229 (263)
T ss_pred hcCCHHHHHHHHHHHH-HHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC---CCcchhHHHHHHHHHHH-H
Confidence 3466677777777666 333433 35566667777777888888888888877742 23456677777788776 7
Q ss_pred cCCHHHHHHHHHHHHhhCCCcHH
Q 001486 447 TGSADNARDILIDGIKHVPNCKL 469 (1070)
Q Consensus 447 ~g~~e~Ar~iyekaL~~~P~~~~ 469 (1070)
.|++++|+++|+++++.+|++..
T Consensus 230 ~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 230 KGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred cCCHHHHHHHHHHHHHHCcCCHH
Confidence 88888888888888888887664
No 168
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.88 E-value=4.3e-05 Score=64.58 Aligned_cols=62 Identities=13% Similarity=0.116 Sum_probs=44.5
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcCCCH
Q 001486 44 LSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSV 107 (1070)
Q Consensus 44 i~~~~~~~~~~~~~a~~vyeraL~~~P~s~~lW~~ya~~e~~~~~~e~A~~lferAL~~~P~s~ 107 (1070)
+..+... +++++|+.+|+++++.+|.+...|..++.++...|++++|+.+|++++...|.++
T Consensus 4 a~~~~~~--g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 4 ARALYQQ--GDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHC--THHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHc--CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 3444444 7777777888888887888778888888777777777777788888777777653
No 169
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.88 E-value=0.011 Score=61.33 Aligned_cols=223 Identities=20% Similarity=0.179 Sum_probs=130.3
Q ss_pred CHHHHHHHHHHHhccCCC--CHHHHHHHHHHHHhhCChhHHHHHHHHHHHH-HhhhchHHHHHHHHHHHHhCCHHHHHHH
Q 001486 304 DFDWVVKLYERCLIPCAD--YPEFWMRYVDFMESKGGREIASYALDRATQI-FLKRLPVIHLFNARYKEQIGDTSAARAA 380 (1070)
Q Consensus 304 ~~~~a~~~yerAL~~~p~--~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~-~~~~~p~i~~~~a~~e~~~g~~~eA~~~ 380 (1070)
....+...+..++...+. ........+..+...+.+..+...+..++.. ........+...+.+....+++.+|...
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (291)
T COG0457 38 ELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALEL 117 (291)
T ss_pred hHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHH
Confidence 344555556666655544 3556666666677777777777777776652 1233445666666666677777777777
Q ss_pred HHHHhhccChhhHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHHHHhhccCC---CcHHHHHHHHHHHHhhcCCHHHHHHH
Q 001486 381 FPESYIDSDSRFIEKVTFKAN-MERRLGNFVAACDTYKEALETAAEQRKFH---TLPLLYVQFSRLTYTTTGSADNARDI 456 (1070)
Q Consensus 381 ~~~al~~~~p~~~~~w~~~a~-le~~~g~~~~A~~vyekal~~~~~~~~~~---~~~~l~i~~A~~~~~~~g~~e~Ar~i 456 (1070)
+..++ ...+.....+..... ++...|+++.|...|++++.. .+ .....+...+..+. ..++++.|...
T Consensus 118 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~ 189 (291)
T COG0457 118 LEKAL-ALDPDPDLAEALLALGALYELGDYEEALELYEKALEL------DPELNELAEALLALGALLE-ALGRYEEALEL 189 (291)
T ss_pred HHHHH-cCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCccchHHHHHHhhhHHH-HhcCHHHHHHH
Confidence 77766 332322222333333 556667777777777777553 22 23344444444443 56777777777
Q ss_pred HHHHHhhCCC-cHHHHHHHHHHHHHcCCCcchhHHHHHHHHHhccCCcccccCChhhHHHHHHHHHHHHHHhCCHHHHHH
Q 001486 457 LIDGIKHVPN-CKLLLEELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIRN 535 (1070)
Q Consensus 457 yekaL~~~P~-~~~lw~~y~~~e~~~g~~~~~~~ar~l~ekAl~~~~~~s~~l~~~~~~~l~~~~~~~e~~~G~~~~a~~ 535 (1070)
+.++++..+. ....+..........+.... +...+.+++...+ .....+......+. ..|..+.+..
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---a~~~~~~~~~~~~--------~~~~~~~~~~~~~~-~~~~~~~~~~ 257 (291)
T COG0457 190 LEKALKLNPDDDAEALLNLGLLYLKLGKYEE---ALEYYEKALELDP--------DNAEALYNLALLLL-ELGRYEEALE 257 (291)
T ss_pred HHHHHhhCcccchHHHHHhhHHHHHcccHHH---HHHHHHHHHhhCc--------ccHHHHhhHHHHHH-HcCCHHHHHH
Confidence 7777777777 46666666666555553332 4566666664322 11223344444444 6667777777
Q ss_pred HHHHHHHhCCC
Q 001486 536 AWNQHIKLFPH 546 (1070)
Q Consensus 536 ~~~ra~~~~p~ 546 (1070)
.+.++++..|.
T Consensus 258 ~~~~~~~~~~~ 268 (291)
T COG0457 258 ALEKALELDPD 268 (291)
T ss_pred HHHHHHHhCcc
Confidence 77777777765
No 170
>KOG3598 consensus Thyroid hormone receptor-associated protein complex, subunit TRAP230 [Transcription]
Probab=97.88 E-value=4.4e-05 Score=94.02 Aligned_cols=9 Identities=22% Similarity=0.501 Sum_probs=4.2
Q ss_pred HHHHHHHHH
Q 001486 290 KNWHDYLSF 298 (1070)
Q Consensus 290 ~~W~~yi~~ 298 (1070)
..|+.+++.
T Consensus 1251 ka~f~lgdA 1259 (2220)
T KOG3598|consen 1251 KAWFELGDA 1259 (2220)
T ss_pred HHHHHcchh
Confidence 445554443
No 171
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.87 E-value=4.7e-05 Score=64.89 Aligned_cols=65 Identities=18% Similarity=0.244 Sum_probs=57.8
Q ss_pred HcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 001486 405 RLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLLLEELIK 476 (1070)
Q Consensus 405 ~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~g~~e~Ar~iyekaL~~~P~~~~lw~~y~~ 476 (1070)
..|++++|+.+|+++++. .|.+..+++.+|.++. ..|++++|+.++++++...|++..+|..+++
T Consensus 3 ~~~~~~~A~~~~~~~l~~------~p~~~~~~~~la~~~~-~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR------NPDNPEARLLLAQCYL-KQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH------TTTSHHHHHHHHHHHH-HTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHH------CCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 568999999999999998 6889999999999998 9999999999999999999999888877665
No 172
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.85 E-value=9.7e-05 Score=66.03 Aligned_cols=82 Identities=16% Similarity=0.061 Sum_probs=68.2
Q ss_pred hCChhHHHHHHHHHHHHHhhh-chHHHHHHHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHH
Q 001486 336 KGGREIASYALDRATQIFLKR-LPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACD 414 (1070)
Q Consensus 336 ~g~~e~A~~il~rAl~~~~~~-~p~i~~~~a~~e~~~g~~~eA~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~ 414 (1070)
.|+++.|+.+|++++.....+ +..+|+.+|..+.+.|++++|..++++ . ..++.+...++.+|.++..+|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~-~~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L-KLDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H-THHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h-CCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 578999999999999983322 556888889999999999999999998 4 5666677777788999999999999999
Q ss_pred HHHHH
Q 001486 415 TYKEA 419 (1070)
Q Consensus 415 vyeka 419 (1070)
+|+++
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 99985
No 173
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.82 E-value=0.0002 Score=73.61 Aligned_cols=106 Identities=8% Similarity=-0.099 Sum_probs=82.2
Q ss_pred HHHHHHhCC--CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 001486 26 LEEFIAEGS--LDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLC---YGYWRKYADHKARLCSIDKVVEVFERAV 100 (1070)
Q Consensus 26 le~~l~~nP--~s~~~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P~s---~~lW~~ya~~e~~~~~~e~A~~lferAL 100 (1070)
+...+..++ .....+..++..+... +++++|...|+++++..|+. ..+|..++..+.+.|++++|+.+|++|+
T Consensus 22 ~~~~~~~~~~~~~a~~~~~lg~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 99 (172)
T PRK02603 22 ILKILPINKKAKEAFVYYRDGMSAQAD--GEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQAL 99 (172)
T ss_pred HHHHcccccHhhhHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 333444344 4555677777777776 99999999999999988764 4689999999999999999999999999
Q ss_pred HhcCCCHHHHHHHHHHHHhhCCChhHHHHHHHHH
Q 001486 101 QSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRA 134 (1070)
Q Consensus 101 ~~~P~s~~lW~~y~~~~~~~~~~~~~ar~vferA 134 (1070)
...|.+...|..++..+... ++...+..-++.|
T Consensus 100 ~~~p~~~~~~~~lg~~~~~~-g~~~~a~~~~~~A 132 (172)
T PRK02603 100 ELNPKQPSALNNIAVIYHKR-GEKAEEAGDQDEA 132 (172)
T ss_pred HhCcccHHHHHHHHHHHHHc-CChHhHhhCHHHH
Confidence 99999999999888888776 6544433333333
No 174
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=0.0002 Score=80.08 Aligned_cols=134 Identities=13% Similarity=0.118 Sum_probs=112.8
Q ss_pred HHHHHHHHHhhCChhHHHHHHHHHHHHHhhhc--------------hHHHHHHHHHHHHhCCHHHHHHHHHHHhhccChh
Q 001486 326 WMRYVDFMESKGGREIASYALDRATQIFLKRL--------------PVIHLFNARYKEQIGDTSAARAAFPESYIDSDSR 391 (1070)
Q Consensus 326 W~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~--------------p~i~~~~a~~e~~~g~~~eA~~~~~~al~~~~p~ 391 (1070)
--.-+.++.+.|++..|..-|+||+..+.-.. -.+++..|..+.+.+++.+|+....++| +++++
T Consensus 211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvL-e~~~~ 289 (397)
T KOG0543|consen 211 KKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVL-ELDPN 289 (397)
T ss_pred HHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHH-hcCCC
Confidence 45678899999999999999999999854211 1367778888899999999999999999 89999
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCC
Q 001486 392 FIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPN 466 (1070)
Q Consensus 392 ~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~g~~e~Ar~iyekaL~~~P~ 466 (1070)
++++.++.+.++..+|+++.|+..|.+|++. .|.+-.+-..++.+-.+.....++.+++|.+.+...+.
T Consensus 290 N~KALyRrG~A~l~~~e~~~A~~df~ka~k~------~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~~ 358 (397)
T KOG0543|consen 290 NVKALYRRGQALLALGEYDLARDDFQKALKL------EPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLAE 358 (397)
T ss_pred chhHHHHHHHHHHhhccHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 9999999999999999999999999999999 67777787888777664455566778888888876653
No 175
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.80 E-value=0.00032 Score=80.72 Aligned_cols=122 Identities=15% Similarity=0.092 Sum_probs=107.0
Q ss_pred HHHHHHHHHHhhCChhHHHHHHHHHHHHHhhhchHHHHHHHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHH
Q 001486 325 FWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMER 404 (1070)
Q Consensus 325 lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~eA~~~~~~al~~~~p~~~~~w~~~a~le~ 404 (1070)
+--.+.+++...++++.|+.+|++..+. .|.++...++++...++-.+|..++.+++ ...|....++...+.++.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~----~pev~~~LA~v~l~~~~E~~AI~ll~~aL-~~~p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRER----DPEVAVLLARVYLLMNEEVEAIRLLNEAL-KENPQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhc----CCcHHHHHHHHHHhcCcHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHH
Confidence 3444566777788999999999998775 68888888999888899999999999999 556777888999999999
Q ss_pred HcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHH
Q 001486 405 RLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILI 458 (1070)
Q Consensus 405 ~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~g~~e~Ar~iye 458 (1070)
..|+++.|..+.++|++. .|.....|..+|.+|. ..|+++.|..+++
T Consensus 246 ~k~~~~lAL~iAk~av~l------sP~~f~~W~~La~~Yi-~~~d~e~ALlaLN 292 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVEL------SPSEFETWYQLAECYI-QLGDFENALLALN 292 (395)
T ss_pred hcCCHHHHHHHHHHHHHh------CchhHHHHHHHHHHHH-hcCCHHHHHHHHh
Confidence 999999999999999999 6888999999999998 9999999997665
No 176
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.80 E-value=0.00036 Score=71.39 Aligned_cols=92 Identities=8% Similarity=-0.095 Sum_probs=78.5
Q ss_pred HHHHHHHhCCCC--HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHhCCHHHHHHHHHHH
Q 001486 25 GLEEFIAEGSLD--FDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCY---GYWRKYADHKARLCSIDKVVEVFERA 99 (1070)
Q Consensus 25 ~le~~l~~nP~s--~~~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P~s~---~lW~~ya~~e~~~~~~e~A~~lferA 99 (1070)
.+...++.+..+ ...|..++..+... +++++|...|++++...|++. ..|..++.++...+.+++|+.+|++|
T Consensus 21 ~l~~~~~~~~~~~~a~~~~~~g~~~~~~--g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~A 98 (168)
T CHL00033 21 ILLRILPTTSGEKEAFTYYRDGMSAQSE--GEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQA 98 (168)
T ss_pred hhhHhccCCchhHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 454444667766 77888888888877 999999999999999988754 48999999999999999999999999
Q ss_pred HHhcCCCHHHHHHHHHHHH
Q 001486 100 VQSATYSVDVWFHYCSLSM 118 (1070)
Q Consensus 100 L~~~P~s~~lW~~y~~~~~ 118 (1070)
+...|.....|...+.++.
T Consensus 99 l~~~~~~~~~~~~la~i~~ 117 (168)
T CHL00033 99 LERNPFLPQALNNMAVICH 117 (168)
T ss_pred HHhCcCcHHHHHHHHHHHH
Confidence 9999999999988887776
No 177
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.79 E-value=0.00035 Score=76.44 Aligned_cols=103 Identities=10% Similarity=0.106 Sum_probs=87.7
Q ss_pred CHHHHHHHHHHH-HhcCCCcHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcCCC---HH
Q 001486 36 DFDEWTSLLSEI-ENSCPDDIEMIGLVYDSFLAEFPLC---YGYWRKYADHKARLCSIDKVVEVFERAVQSATYS---VD 108 (1070)
Q Consensus 36 s~~~W~~li~~~-~~~~~~~~~~a~~vyeraL~~~P~s---~~lW~~ya~~e~~~~~~e~A~~lferAL~~~P~s---~~ 108 (1070)
+...|+..+..+ .+. +++++|...|+++++.+|++ ...|+.++..+...+++++|+..|++++..+|.+ .+
T Consensus 141 ~e~~~Y~~A~~l~~~~--~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~d 218 (263)
T PRK10803 141 DANTDYNAAIALVQDK--SRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAAD 218 (263)
T ss_pred CHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhH
Confidence 557777766544 444 78999999999999999998 4789999999999999999999999999988875 67
Q ss_pred HHHHHHHHHHhhCCChhHHHHHHHHHHHHcCCC
Q 001486 109 VWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKD 141 (1070)
Q Consensus 109 lW~~y~~~~~~~~~~~~~ar~vferAL~~~p~~ 141 (1070)
.|...+..+... |+.++|+++|+++++..|..
T Consensus 219 Al~klg~~~~~~-g~~~~A~~~~~~vi~~yP~s 250 (263)
T PRK10803 219 AMFKVGVIMQDK-GDTAKAKAVYQQVIKKYPGT 250 (263)
T ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHHHCcCC
Confidence 787777777777 99999999999999988864
No 178
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=97.78 E-value=0.00047 Score=66.60 Aligned_cols=117 Identities=20% Similarity=0.306 Sum_probs=80.1
Q ss_pred HHHHHHHHHhccCC---CCHHHHHHHHHHHHhh----CChhHHHHHHHHHHHHHhhhchHHHHHHHHHHHHhCCHHHHHH
Q 001486 307 WVVKLYERCLIPCA---DYPEFWMRYVDFMESK----GGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARA 379 (1070)
Q Consensus 307 ~a~~~yerAL~~~p---~~~~lW~~ya~~l~~~----g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~eA~~ 379 (1070)
..+..|+..|.... +..++|+.|+++.+.. |.......+++|+++.+.. ++.
T Consensus 3 ~~r~~~e~~i~~~~~~dDPL~~w~~yI~w~~~~~p~~~~~~~L~~lLer~~~~f~~-~~~-------------------- 61 (126)
T PF08311_consen 3 QQRQEFEEQIRSYEEGDDPLDPWLRYIKWIEENYPSGGKQSGLLELLERCIRKFKD-DER-------------------- 61 (126)
T ss_dssp HHHHHHHHHHHCCGGSS-CHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHTT-SGG--------------------
T ss_pred HHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHHhh-hHh--------------------
Confidence 45667777776433 5578899999888865 3345666777787776321 110
Q ss_pred HHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 001486 380 AFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILID 459 (1070)
Q Consensus 380 ~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~g~~e~Ar~iyek 459 (1070)
. ..++.++++|+.++++.. .++++|.-+... ......+.+|+.||.+++ ..|++++|.+||.+
T Consensus 62 -----Y-~nD~RylkiWi~ya~~~~------~~~~if~~l~~~----~IG~~~A~fY~~wA~~le-~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 62 -----Y-KNDERYLKIWIKYADLSS------DPREIFKFLYSK----GIGTKLALFYEEWAEFLE-KRGNFKKADEIYQL 124 (126)
T ss_dssp -----G-TT-HHHHHHHHHHHTTBS------HHHHHHHHHHHH----TTSTTBHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred -----h-cCCHHHHHHHHHHHHHcc------CHHHHHHHHHHc----CccHHHHHHHHHHHHHHH-HcCCHHHHHHHHHh
Confidence 0 235567888888886432 778888776654 335678889999999988 88999999999988
Q ss_pred HH
Q 001486 460 GI 461 (1070)
Q Consensus 460 aL 461 (1070)
||
T Consensus 125 Gi 126 (126)
T PF08311_consen 125 GI 126 (126)
T ss_dssp HH
T ss_pred hC
Confidence 86
No 179
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.77 E-value=0.096 Score=58.29 Aligned_cols=149 Identities=17% Similarity=0.091 Sum_probs=113.4
Q ss_pred cCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhhhchHHHHHHHHHHHHhCCHHHHHHHH
Q 001486 302 QGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAF 381 (1070)
Q Consensus 302 ~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~eA~~~~ 381 (1070)
..|...++..-..+++..|...-.-+..++.|.+.|++-++-.|++.+-+.. -.|.||..|... +.|+.- ..-+
T Consensus 242 dadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e--PHP~ia~lY~~a--r~gdta--~dRl 315 (531)
T COG3898 242 DADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAE--PHPDIALLYVRA--RSGDTA--LDRL 315 (531)
T ss_pred cCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC--CChHHHHHHHHh--cCCCcH--HHHH
Confidence 3456677788888888888888888888999999999999999999998862 246788776553 455433 2223
Q ss_pred HHH--hhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 001486 382 PES--YIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILID 459 (1070)
Q Consensus 382 ~~a--l~~~~p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~g~~e~Ar~iyek 459 (1070)
+++ +..+.|++.+..+..+..-..-|++..|+.--+.++.. .-...+|+-+|.+++-..||-.++|..+-+
T Consensus 316 kRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~-------~pres~~lLlAdIeeAetGDqg~vR~wlAq 388 (531)
T COG3898 316 KRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE-------APRESAYLLLADIEEAETGDQGKVRQWLAQ 388 (531)
T ss_pred HHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh-------CchhhHHHHHHHHHhhccCchHHHHHHHHH
Confidence 333 34566777777777777666779999999988888876 345678999999998677999999999999
Q ss_pred HHhh
Q 001486 460 GIKH 463 (1070)
Q Consensus 460 aL~~ 463 (1070)
+++.
T Consensus 389 av~A 392 (531)
T COG3898 389 AVKA 392 (531)
T ss_pred HhcC
Confidence 9974
No 180
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.77 E-value=0.0044 Score=61.97 Aligned_cols=133 Identities=15% Similarity=0.056 Sum_probs=105.6
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHH
Q 001486 361 HLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFS 440 (1070)
Q Consensus 361 ~~~~a~~e~~~g~~~eA~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A 440 (1070)
.+.++..+.+.|++.||+..|.+++.-+..+...+.+.+++.....+++..|...+++..+..+ ....++-.+.+|
T Consensus 92 r~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~p----a~r~pd~~Ll~a 167 (251)
T COG4700 92 RYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNP----AFRSPDGHLLFA 167 (251)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCC----ccCCCCchHHHH
Confidence 3455666778999999999999998655556677788888888888999999999999888721 234677788899
Q ss_pred HHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCCcc-hhHHHHHHHHHhc
Q 001486 441 RLTYTTTGSADNARDILIDGIKHVPNCKLLLEELIKFTMVHGGRSH-ISIVDAVISNALY 499 (1070)
Q Consensus 441 ~~~~~~~g~~e~Ar~iyekaL~~~P~~~~lw~~y~~~e~~~g~~~~-~~~ar~l~ekAl~ 499 (1070)
+.+. ..|++..|+..|+-++..+|+-. .-..|..|+.+.|...+ -...+++++++.+
T Consensus 168 R~la-a~g~~a~Aesafe~a~~~ypg~~-ar~~Y~e~La~qgr~~ea~aq~~~v~d~~~r 225 (251)
T COG4700 168 RTLA-AQGKYADAESAFEVAISYYPGPQ-ARIYYAEMLAKQGRLREANAQYVAVVDTAKR 225 (251)
T ss_pred HHHH-hcCCchhHHHHHHHHHHhCCCHH-HHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 9998 99999999999999999988644 35568899988884433 2357788888875
No 181
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=97.77 E-value=0.00047 Score=66.62 Aligned_cols=108 Identities=18% Similarity=0.366 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHh----CCHHHHHHHHHHHHHhcCC---------CHHHHHHHHHHHHh
Q 001486 56 EMIGLVYDSFLAEFP---LCYGYWRKYADHKARL----CSIDKVVEVFERAVQSATY---------SVDVWFHYCSLSMS 119 (1070)
Q Consensus 56 ~~a~~vyeraL~~~P---~s~~lW~~ya~~e~~~----~~~e~A~~lferAL~~~P~---------s~~lW~~y~~~~~~ 119 (1070)
+..+..||..|.... +--+.|..|+++.... +.-.....+++||+..+.. .+++|+.|+++.
T Consensus 2 ~~~r~~~e~~i~~~~~~dDPL~~w~~yI~w~~~~~p~~~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~-- 79 (126)
T PF08311_consen 2 EQQRQEFEEQIRSYEEGDDPLDPWLRYIKWIEENYPSGGKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLS-- 79 (126)
T ss_dssp HHHHHHHHHHHHCCGGSS-CHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTB--
T ss_pred HHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHc--
Confidence 445677777777666 4467888888887654 3456777888888887543 367999999872
Q ss_pred hCCChhHHHHHHHHHHHH-cCCCCCchHHHHHHHHHHHHcccHHHHHHHHHHHH
Q 001486 120 TFEDPNDVRRLFKRALSF-VGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTL 172 (1070)
Q Consensus 120 ~~~~~~~ar~vferAL~~-~p~~~~s~~lW~~yi~fe~~~~~~~~a~~iy~raL 172 (1070)
..++.+|...... +|.. ...+|..|+.+++..+++++|.+||.++|
T Consensus 80 -----~~~~~if~~l~~~~IG~~--~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 80 -----SDPREIFKFLYSKGIGTK--LALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp -----SHHHHHHHHHHHHTTSTT--BHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred -----cCHHHHHHHHHHcCccHH--HHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 2789999887763 4554 67999999999999999999999999875
No 182
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.74 E-value=0.25 Score=60.67 Aligned_cols=116 Identities=12% Similarity=0.091 Sum_probs=76.9
Q ss_pred CcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChhHHHHHHH
Q 001486 53 DDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFK 132 (1070)
Q Consensus 53 ~~~~~a~~vyeraL~~~P~s~~lW~~ya~~e~~~~~~e~A~~lferAL~~~P~s~~lW~~y~~~~~~~~~~~~~ar~vfe 132 (1070)
+.+.+|..-.++.++.+|+..-.-..-+-...+.|..++|..+++- +...+.+-++-+..+.+.....+..++|..+|+
T Consensus 23 ~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~-~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye 101 (932)
T KOG2053|consen 23 SQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEA-LYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYE 101 (932)
T ss_pred HHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhh-hccCCCCchHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 6788899999999999999865544444455677888888866654 444344445555555444433388999999999
Q ss_pred HHHHHcCCCCCchHHHHHHHHHHHHcccHHHHHHHHH
Q 001486 133 RALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFV 169 (1070)
Q Consensus 133 rAL~~~p~~~~s~~lW~~yi~fe~~~~~~~~a~~iy~ 169 (1070)
||+...|..-....++..|++-..-...-..+.++|.
T Consensus 102 ~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK 138 (932)
T KOG2053|consen 102 RANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYK 138 (932)
T ss_pred HHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999888743334566666664443333445556655
No 183
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.73 E-value=0.0096 Score=63.08 Aligned_cols=181 Identities=14% Similarity=0.081 Sum_probs=134.9
Q ss_pred HHHHHHHHHHHHHcCCH-HHHHHHHHHHhccCCCCHHHHHH-HHHHHHhhCChhHHHHHHHHHHHHHhhhchHHHHHHHH
Q 001486 289 LKNWHDYLSFAEKQGDF-DWVVKLYERCLIPCADYPEFWMR-YVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNAR 366 (1070)
Q Consensus 289 ~~~W~~yi~~~~~~g~~-~~a~~~yerAL~~~p~~~~lW~~-ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~ 366 (1070)
....+.++.++..-+.. +....+++...........+|.. -|.++...|++++|..++.+...+ ++...-..
T Consensus 72 lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~l------E~~Al~Vq 145 (299)
T KOG3081|consen 72 LQAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENL------EAAALNVQ 145 (299)
T ss_pred HHHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchH------HHHHHHHH
Confidence 44566666666544443 34556777777666666655554 466888889999999999885443 34444456
Q ss_pred HHHHhCCHHHHHHHHHHHhhccChh-----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHH
Q 001486 367 YKEQIGDTSAARAAFPESYIDSDSR-----FIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSR 441 (1070)
Q Consensus 367 ~e~~~g~~~eA~~~~~~al~~~~p~-----~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~ 441 (1070)
+..+..++|-|+..++++. .++.+ ....|++++. --+.+..|.-+|++.-+. .+.++.+....|.
T Consensus 146 I~lk~~r~d~A~~~lk~mq-~ided~tLtQLA~awv~la~---ggek~qdAfyifeE~s~k------~~~T~~llnG~Av 215 (299)
T KOG3081|consen 146 ILLKMHRFDLAEKELKKMQ-QIDEDATLTQLAQAWVKLAT---GGEKIQDAFYIFEELSEK------TPPTPLLLNGQAV 215 (299)
T ss_pred HHHHHHHHHHHHHHHHHHH-ccchHHHHHHHHHHHHHHhc---cchhhhhHHHHHHHHhcc------cCCChHHHccHHH
Confidence 6788889999999999886 44432 3455666653 234578899999998876 4678889998888
Q ss_pred HHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCCcc
Q 001486 442 LTYTTTGSADNARDILIDGIKHVPNCKLLLEELIKFTMVHGGRSH 486 (1070)
Q Consensus 442 ~~~~~~g~~e~Ar~iyekaL~~~P~~~~lw~~y~~~e~~~g~~~~ 486 (1070)
+.. ..|++++|..+++.+|.+.+++++...+.+-.....|....
T Consensus 216 ~~l-~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~ 259 (299)
T KOG3081|consen 216 CHL-QLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAE 259 (299)
T ss_pred HHH-HhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChH
Confidence 887 99999999999999999999999999999988888887643
No 184
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.73 E-value=0.00084 Score=64.10 Aligned_cols=94 Identities=17% Similarity=0.149 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccC---CCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhhh---chHHHHHH
Q 001486 291 NWHDYLSFAEKQGDFDWVVKLYERCLIPC---ADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKR---LPVIHLFN 364 (1070)
Q Consensus 291 ~W~~yi~~~~~~g~~~~a~~~yerAL~~~---p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~---~p~i~~~~ 364 (1070)
+++..+..+...|+.++|+.+|++|+... +.-..+++.++..+...|++++|..+|++++.. .|+ ...+..++
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~-~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE-FPDDELNAALRVFL 81 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-CCCccccHHHHHHH
Confidence 56777888888999999999999999853 223578999999999999999999999999986 455 45688888
Q ss_pred HHHHHHhCCHHHHHHHHHHHh
Q 001486 365 ARYKEQIGDTSAARAAFPESY 385 (1070)
Q Consensus 365 a~~e~~~g~~~eA~~~~~~al 385 (1070)
+..+...|+.++|...+..++
T Consensus 82 Al~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHH
Confidence 888899999999999988776
No 185
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.73 E-value=0.0074 Score=62.65 Aligned_cols=199 Identities=16% Similarity=0.104 Sum_probs=147.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhc--cCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhhhchHHHHHHHH-
Q 001486 290 KNWHDYLSFAEKQGDFDWVVKLYERCLI--PCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNAR- 366 (1070)
Q Consensus 290 ~~W~~yi~~~~~~g~~~~a~~~yerAL~--~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~- 366 (1070)
.............+++..+...+..++. ..+.....|...+.++...+.++.+..++..++.. .+.....+.....
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALAL-DPDPDLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcC-CCCcchHHHHHHHH
Confidence 3455556666678888999999999887 67888889999999999999999999999998875 2222233444444
Q ss_pred HHHHhCCHHHHHHHHHHHhhccCh---hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCC-cHHHHHHHHHH
Q 001486 367 YKEQIGDTSAARAAFPESYIDSDS---RFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHT-LPLLYVQFSRL 442 (1070)
Q Consensus 367 ~e~~~g~~~eA~~~~~~al~~~~p---~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~-~~~l~i~~A~~ 442 (1070)
.....|++++|...|.+++. ..+ .....+...+......++++.+...+.++++. .+. ....+..++..
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~~~~ 211 (291)
T COG0457 139 ALYELGDYEEALELYEKALE-LDPELNELAEALLALGALLEALGRYEEALELLEKALKL------NPDDDAEALLNLGLL 211 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHh-cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh------CcccchHHHHHhhHH
Confidence 67789999999999999974 554 34455555555566778999999999999998 344 56778888888
Q ss_pred HHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCCcchhHHHHHHHHHhcc
Q 001486 443 TYTTTGSADNARDILIDGIKHVPNCKLLLEELIKFTMVHGGRSHISIVDAVISNALYS 500 (1070)
Q Consensus 443 ~~~~~g~~e~Ar~iyekaL~~~P~~~~lw~~y~~~e~~~g~~~~~~~ar~l~ekAl~~ 500 (1070)
+. ..++++.|...+.+++...|.....+..........|. ...+...+.+++..
T Consensus 212 ~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 265 (291)
T COG0457 212 YL-KLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGR---YEEALEALEKALEL 265 (291)
T ss_pred HH-HcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCC---HHHHHHHHHHHHHh
Confidence 87 88899999999999999999855444444443334442 33356777777753
No 186
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.72 E-value=0.0007 Score=64.64 Aligned_cols=100 Identities=18% Similarity=0.165 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHhhcc--ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHH
Q 001486 359 VIHLFNARYKEQIGDTSAARAAFPESYIDS--DSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLY 436 (1070)
Q Consensus 359 ~i~~~~a~~e~~~g~~~eA~~~~~~al~~~--~p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~ 436 (1070)
.+++..|..+...|+.++|+.+|++++..- .+...++++.++..++.+|++++|..++++++..++. .+....+.
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~---~~~~~~l~ 78 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPD---DELNAALR 78 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---ccccHHHH
Confidence 467777888888999999999999988422 2344678899999999999999999999999887321 12256777
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHh
Q 001486 437 VQFSRLTYTTTGSADNARDILIDGIK 462 (1070)
Q Consensus 437 i~~A~~~~~~~g~~e~Ar~iyekaL~ 462 (1070)
..+|.++. ..|+.++|...+-.++.
T Consensus 79 ~f~Al~L~-~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 79 VFLALALY-NLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHH
Confidence 77888887 88999999998887774
No 187
>PRK11906 transcriptional regulator; Provisional
Probab=97.66 E-value=0.0015 Score=74.99 Aligned_cols=121 Identities=12% Similarity=-0.015 Sum_probs=95.0
Q ss_pred hhHHHHHHHHHH---HHHhhhchHHHHHHHHHH--H-------HhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHc
Q 001486 339 REIASYALDRAT---QIFLKRLPVIHLFNARYK--E-------QIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRL 406 (1070)
Q Consensus 339 ~e~A~~il~rAl---~~~~~~~p~i~~~~a~~e--~-------~~g~~~eA~~~~~~al~~~~p~~~~~w~~~a~le~~~ 406 (1070)
.+.|..+|.+|+ .+ .|.....|...|... . ...+..+|+.+-++|+ ++++.+..+....+.+..-.
T Consensus 274 ~~~Al~lf~ra~~~~~l-dp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv-eld~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDI-QTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS-DITTVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHhhcccC-CcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH-hcCCCCHHHHHHHHHHHHhh
Confidence 467888999999 55 444443333333221 1 2334567888889998 78888877777777766677
Q ss_pred CCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcH
Q 001486 407 GNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCK 468 (1070)
Q Consensus 407 g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~g~~e~Ar~iyekaL~~~P~~~ 468 (1070)
|+++.|...|++|+.+ .|..+.+|...|.++. ..|+.++|+..+++|+++.|.-.
T Consensus 352 ~~~~~a~~~f~rA~~L------~Pn~A~~~~~~~~~~~-~~G~~~~a~~~i~~alrLsP~~~ 406 (458)
T PRK11906 352 GQAKVSHILFEQAKIH------STDIASLYYYRALVHF-HNEKIEEARICIDKSLQLEPRRR 406 (458)
T ss_pred cchhhHHHHHHHHhhc------CCccHHHHHHHHHHHH-HcCCHHHHHHHHHHHhccCchhh
Confidence 8899999999999999 7999999999999988 99999999999999999999743
No 188
>PRK15331 chaperone protein SicA; Provisional
Probab=97.65 E-value=0.00055 Score=67.97 Aligned_cols=92 Identities=16% Similarity=-0.026 Sum_probs=77.0
Q ss_pred HHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHH
Q 001486 364 NARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLT 443 (1070)
Q Consensus 364 ~a~~e~~~g~~~eA~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~ 443 (1070)
+|.-....|++++|..+|.-.+ ..++...+.|+.++.++...|+++.|+.+|..|..+ ...++..++..|.|+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~-~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l------~~~dp~p~f~agqC~ 115 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLC-IYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL------LKNDYRPVFFTGQCQ 115 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHH-HhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------ccCCCCccchHHHHH
Confidence 3444467899999999998776 667777888999999999999999999999999887 456677788888998
Q ss_pred HhhcCCHHHHHHHHHHHHhh
Q 001486 444 YTTTGSADNARDILIDGIKH 463 (1070)
Q Consensus 444 ~~~~g~~e~Ar~iyekaL~~ 463 (1070)
. ..|+.+.|+.+|+.++..
T Consensus 116 l-~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 116 L-LMRKAAKARQCFELVNER 134 (165)
T ss_pred H-HhCCHHHHHHHHHHHHhC
Confidence 8 899999999999999873
No 189
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.63 E-value=0.0087 Score=63.25 Aligned_cols=170 Identities=17% Similarity=0.085 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC---HHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhhhch---HHHHH
Q 001486 290 KNWHDYLSFAEKQGDFDWVVKLYERCLIPCADY---PEFWMRYVDFMESKGGREIASYALDRATQIFLKRLP---VIHLF 363 (1070)
Q Consensus 290 ~~W~~yi~~~~~~g~~~~a~~~yerAL~~~p~~---~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p---~i~~~ 363 (1070)
+.+...+......|++.+|+..|++.+...|.. ..+++.+|..+.+.|+++.|+..|++-+.. .|+.+ .+++.
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~-yP~~~~~~~A~Y~ 84 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL-YPNSPKADYALYM 84 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--TT-TTHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-CCCCcchhhHHHH
Confidence 455556666667899999999999999876654 677888888888999999999999999887 44333 34444
Q ss_pred HHHHHHH-----------hCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCc
Q 001486 364 NARYKEQ-----------IGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTL 432 (1070)
Q Consensus 364 ~a~~e~~-----------~g~~~eA~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~ 432 (1070)
.|..... .+...+|...|+..++ ..|++. -..+|......+.+.+
T Consensus 85 ~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~-~yP~S~--------------y~~~A~~~l~~l~~~l--------- 140 (203)
T PF13525_consen 85 LGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIK-RYPNSE--------------YAEEAKKRLAELRNRL--------- 140 (203)
T ss_dssp HHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHH-H-TTST--------------THHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHhCccchhcccChHHHHHHHHHHHHHHH-HCcCch--------------HHHHHHHHHHHHHHHH---------
Confidence 4432111 1122344445555442 222221 1122222222222211
Q ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHH---HHHHHHHHHHcCCCc
Q 001486 433 PLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLL---LEELIKFTMVHGGRS 485 (1070)
Q Consensus 433 ~~l~i~~A~~~~~~~g~~e~Ar~iyekaL~~~P~~~~l---w~~y~~~e~~~g~~~ 485 (1070)
..--+..|+++. ..|.+..|..-|+..|+.+|++... +...++-....|...
T Consensus 141 a~~e~~ia~~Y~-~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 141 AEHELYIARFYY-KRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp HHHHHHHHHHHH-CTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHHHHHH-HcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChH
Confidence 122345688887 8999999999999999999997743 333444444455443
No 190
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.59 E-value=0.22 Score=66.90 Aligned_cols=244 Identities=18% Similarity=0.211 Sum_probs=147.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcc-------CCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhhhchHHH
Q 001486 289 LKNWHDYLSFAEKQGDFDWVVKLYERCLIP-------CADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIH 361 (1070)
Q Consensus 289 ~~~W~~yi~~~~~~g~~~~a~~~yerAL~~-------~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~ 361 (1070)
.+.|...+..-....+..+-+-.++|++.. .....+.|+.+|++-...|.++.|...+-.|.+. ..|.++
T Consensus 1629 sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~---r~~~i~ 1705 (2382)
T KOG0890|consen 1629 SDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKES---RLPEIV 1705 (2382)
T ss_pred chhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhc---ccchHH
Confidence 367888887766556667777777887742 2345789999999999999999999888888765 378899
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHhhccChh----------------hHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHH
Q 001486 362 LFNARYKEQIGDTSAARAAFPESYIDSDSR----------------FIEKVTFKANMERRLGNF--VAACDTYKEALETA 423 (1070)
Q Consensus 362 ~~~a~~e~~~g~~~eA~~~~~~al~~~~p~----------------~~~~w~~~a~le~~~g~~--~~A~~vyekal~~~ 423 (1070)
+..|++++..|+...|..+++..++...++ ..++.+..+.+....|++ +...+.|..+.+.+
T Consensus 1706 ~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail 1785 (2382)
T KOG0890|consen 1706 LERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAIL 1785 (2382)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHc
Confidence 999999999999999999999988433221 123444555555555664 56889999999985
Q ss_pred HhhccCCCcHHHHHH--HHHHHHh-------hcCCHHH---HHHHHHHHHhhC--------CCcHHHHHHHHHHHHH---
Q 001486 424 AEQRKFHTLPLLYVQ--FSRLTYT-------TTGSADN---ARDILIDGIKHV--------PNCKLLLEELIKFTMV--- 480 (1070)
Q Consensus 424 ~~~~~~~~~~~l~i~--~A~~~~~-------~~g~~e~---Ar~iyekaL~~~--------P~~~~lw~~y~~~e~~--- 480 (1070)
+..++. .+++. +.+++.. ..|++.. |.-.|.+++... |.-..+|+.+..-...
T Consensus 1786 ~ewe~~----hy~l~~yy~kll~~~~~~~~E~~g~~~~~l~~~~~~~~sl~yg~~~iyqsmPRllTLWLD~~t~~~~~ek 1861 (2382)
T KOG0890|consen 1786 PEWEDK----HYHLGKYYDKLLEDYKSNKMEKSGRVLSLLKAIYFFGRALYYGNQHLYQSMPRLLTLWLDIGTHISSVEK 1861 (2382)
T ss_pred ccccCc----eeeHHHHHHHHhhhhhcccccccccHHHHHHHHHHHHHHHHhcchhHHHhhhHHHHHHHhhcchhccccc
Confidence 432221 12221 3333321 3455555 444556776532 3333567665322222
Q ss_pred cCCCc----chhHHHHHHHHHhccCCcccccCChhhHHHHHHHHHHHHHH-hCCHHH----HHHHHHHHHHhCCCCcc
Q 001486 481 HGGRS----HISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDL-CGTIHD----IRNAWNQHIKLFPHTVR 549 (1070)
Q Consensus 481 ~g~~~----~~~~ar~l~ekAl~~~~~~s~~l~~~~~~~l~~~~~~~e~~-~G~~~~----a~~~~~ra~~~~p~~~~ 549 (1070)
.|..+ +++....+++.++...| + -.++.+|-.+..+ +-..++ ++.+..+....+|.-..
T Consensus 1862 ~~r~ei~s~~~~~in~~i~~~~~~lp-------~---Y~f~ta~sQLlSRicH~~~dV~~vl~~II~~l~~~YPqq~l 1929 (2382)
T KOG0890|consen 1862 APRGEIVSKNLKLINSLIEEALEHLP-------T---YQFYTAYSQLLSRICHPNQDVARVLKHIIAKLVLAYPQQTL 1929 (2382)
T ss_pred CChhhhhhhhHHHHHHHHHHHHHhCc-------c---hHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCchHHH
Confidence 22211 12334566666765332 1 2455556666643 222233 34444455555566554
No 191
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.59 E-value=0.00032 Score=60.63 Aligned_cols=60 Identities=22% Similarity=0.138 Sum_probs=51.3
Q ss_pred CcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcCCCHHHHHH
Q 001486 53 DDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFH 112 (1070)
Q Consensus 53 ~~~~~a~~vyeraL~~~P~s~~lW~~ya~~e~~~~~~e~A~~lferAL~~~P~s~~lW~~ 112 (1070)
+++++|..+++++++.+|.++.+|..++.++...|++++|...|+++++..|.+.+.-..
T Consensus 9 ~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~ 68 (73)
T PF13371_consen 9 EDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL 68 (73)
T ss_pred CCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 788888899999999999999999999988888888999999999999888877765443
No 192
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.56 E-value=0.0075 Score=65.52 Aligned_cols=174 Identities=10% Similarity=-0.011 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHH---HHHHHHHHHhhCChhHHHHHHHHHHHHHhhhch---HHHH
Q 001486 289 LKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEF---WMRYVDFMESKGGREIASYALDRATQIFLKRLP---VIHL 362 (1070)
Q Consensus 289 ~~~W~~yi~~~~~~g~~~~a~~~yerAL~~~p~~~~l---W~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p---~i~~ 362 (1070)
...+...+.-....|+++.|+..|++++...|..... .+.+|..+.+.+++++|+..|++.++. .|+.| .+++
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~-~P~~~~~~~a~Y 110 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL-NPTHPNIDYVLY 110 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-CcCCCchHHHHH
Confidence 3445555665667899999999999999988877543 477777888899999999999999998 55444 4555
Q ss_pred HHHHHHHHhC---------------C---HHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 001486 363 FNARYKEQIG---------------D---TSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAA 424 (1070)
Q Consensus 363 ~~a~~e~~~g---------------~---~~eA~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~ 424 (1070)
..|......+ + ..+|...|++.++ ..|++.- ..+|..-...+.+.
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~-~yP~S~y--------------a~~A~~rl~~l~~~-- 173 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVR-GYPNSQY--------------TTDATKRLVFLKDR-- 173 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHH-HCcCChh--------------HHHHHHHHHHHHHH--
Confidence 5454321111 1 2234455555552 2233311 11122111111111
Q ss_pred hhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHH---HHHHHHHHHHcCCCcchh
Q 001486 425 EQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLL---LEELIKFTMVHGGRSHIS 488 (1070)
Q Consensus 425 ~~~~~~~~~~l~i~~A~~~~~~~g~~e~Ar~iyekaL~~~P~~~~l---w~~y~~~e~~~g~~~~~~ 488 (1070)
...--+..|+++. +.|.+..|..-|+..|+.+|++... ....++-....|..+.+.
T Consensus 174 -------la~~e~~ia~~Y~-~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~ 232 (243)
T PRK10866 174 -------LAKYELSVAEYYT-KRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQAD 232 (243)
T ss_pred -------HHHHHHHHHHHHH-HcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHH
Confidence 1222345678887 8899999999999999999987643 333334444456555543
No 193
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.55 E-value=0.0074 Score=60.40 Aligned_cols=136 Identities=13% Similarity=0.122 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHhhCChhHHHHHHHHHHHHHhhhchHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCh--hhHHHHHHHHH
Q 001486 324 EFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDS--RFIEKVTFKAN 401 (1070)
Q Consensus 324 ~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~eA~~~~~~al~~~~p--~~~~~w~~~a~ 401 (1070)
.-.+.++..+.+.|+..+|+..|+.++.-..-+++.+.+..+......+++.+|...+++.. +.+| ..++..+.++.
T Consensus 90 qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~-e~~pa~r~pd~~Ll~aR 168 (251)
T COG4700 90 QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLM-EYNPAFRSPDGHLLFAR 168 (251)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHh-hcCCccCCCCchHHHHH
Confidence 34577888888999999999999999886666778888888888888999999999999887 4444 23445667788
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhcCCHHHHHH----HHHHHHhhCCCcH
Q 001486 402 MERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARD----ILIDGIKHVPNCK 468 (1070)
Q Consensus 402 le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~g~~e~Ar~----iyekaL~~~P~~~ 468 (1070)
.+.-.|.+..|+..|+-+++. ...+...+.|+.++. ..|+.++|+. +++.+.+..|+-.
T Consensus 169 ~laa~g~~a~Aesafe~a~~~-------ypg~~ar~~Y~e~La-~qgr~~ea~aq~~~v~d~~~r~~~H~r 231 (251)
T COG4700 169 TLAAQGKYADAESAFEVAISY-------YPGPQARIYYAEMLA-KQGRLREANAQYVAVVDTAKRSRPHYR 231 (251)
T ss_pred HHHhcCCchhHHHHHHHHHHh-------CCCHHHHHHHHHHHH-HhcchhHHHHHHHHHHHHHHhcchhHH
Confidence 888899999999999999997 345677888899988 8887776654 5555555555443
No 194
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.52 E-value=0.00047 Score=59.57 Aligned_cols=64 Identities=19% Similarity=0.190 Sum_probs=52.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHH
Q 001486 401 NMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLLL 471 (1070)
Q Consensus 401 ~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~g~~e~Ar~iyekaL~~~P~~~~lw 471 (1070)
.++.+.+++++|++++++++.. .|..+.+|..+|.++. ..|++++|+..|+++++..|++...-
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~------~p~~~~~~~~~a~~~~-~~g~~~~A~~~l~~~l~~~p~~~~~~ 66 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALEL------DPDDPELWLQRARCLF-QLGRYEEALEDLERALELSPDDPDAR 66 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHh------CcccchhhHHHHHHHH-HhccHHHHHHHHHHHHHHCCCcHHHH
Confidence 3556678888888888888888 6778888888888887 88889999999999988888776543
No 195
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.50 E-value=0.21 Score=53.70 Aligned_cols=141 Identities=12% Similarity=0.034 Sum_probs=82.0
Q ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 001486 23 KQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQS 102 (1070)
Q Consensus 23 ~~~le~~l~~nP~s~~~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P~s~~lW~~ya~~e~~~~~~e~A~~lferAL~~ 102 (1070)
+..+....+++|.+......++-.+-.. .++..|...|+.....+|.-.++-.-++.-..+.+-+.+|..+......
T Consensus 30 I~~l~s~~Er~p~~rAgLSlLgyCYY~~--Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D- 106 (459)
T KOG4340|consen 30 IQLLGSELERSPRSRAGLSLLGYCYYRL--QEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLD- 106 (459)
T ss_pred HHHHHHHHhcCccchHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcC-
Confidence 3455566677887776665555544333 5788888999999999998888888888877777777777665533322
Q ss_pred cCCCHHHHHHHHHH----HHhhCCChhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHcccHHHHHHHHHHHHccC
Q 001486 103 ATYSVDVWFHYCSL----SMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFP 175 (1070)
Q Consensus 103 ~P~s~~lW~~y~~~----~~~~~~~~~~ar~vferAL~~~p~~~~s~~lW~~yi~fe~~~~~~~~a~~iy~raL~~p 175 (1070)
...+...-+.+ ..+. +|.-.+|.+.+.. |..-....+ ..-.-+.-..|+++.|.+-|..++.+.
T Consensus 107 ---~~~L~~~~lqLqaAIkYse-~Dl~g~rsLveQl----p~en~Ad~~-in~gCllykegqyEaAvqkFqaAlqvs 174 (459)
T KOG4340|consen 107 ---NPALHSRVLQLQAAIKYSE-GDLPGSRSLVEQL----PSENEADGQ-INLGCLLYKEGQYEAAVQKFQAALQVS 174 (459)
T ss_pred ---CHHHHHHHHHHHHHHhccc-ccCcchHHHHHhc----cCCCccchh-ccchheeeccccHHHHHHHHHHHHhhc
Confidence 22333222222 1122 5666666666532 211001111 111111223577888888888887653
No 196
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.50 E-value=0.02 Score=62.31 Aligned_cols=53 Identities=15% Similarity=0.039 Sum_probs=36.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhccCCCC---HHHHHHHHHHHHhhCChhHHHHHHH
Q 001486 295 YLSFAEKQGDFDWVVKLYERCLIPCADY---PEFWMRYVDFMESKGGREIASYALD 347 (1070)
Q Consensus 295 yi~~~~~~g~~~~a~~~yerAL~~~p~~---~~lW~~ya~~l~~~g~~e~A~~il~ 347 (1070)
.++|+.+.|.+.-|+.-|+.++...|.. .++...++..+...|..++|..+..
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 4566667788888888888888765554 4566666667777777777766553
No 197
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.43 E-value=0.018 Score=63.13 Aligned_cols=162 Identities=14% Similarity=0.001 Sum_probs=113.8
Q ss_pred HcCCHHHHHHHHHHHhcc---CC--CCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhh-hch----HHHHHHHHHHHH
Q 001486 301 KQGDFDWVVKLYERCLIP---CA--DYPEFWMRYVDFMESKGGREIASYALDRATQIFLK-RLP----VIHLFNARYKEQ 370 (1070)
Q Consensus 301 ~~g~~~~a~~~yerAL~~---~p--~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~-~~p----~i~~~~a~~e~~ 370 (1070)
+.-++.+++.+-+-++.. ++ .-......++......+.++.+.+.|++|+++-.. +++ .+...++.+.-+
T Consensus 95 ~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~ 174 (518)
T KOG1941|consen 95 KLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQ 174 (518)
T ss_pred HHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHH
Confidence 333455565555555543 22 11233444566666677799999999999987432 233 377788888889
Q ss_pred hCCHHHHHHHHHHHhhccCh---------hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHH
Q 001486 371 IGDTSAARAAFPESYIDSDS---------RFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSR 441 (1070)
Q Consensus 371 ~g~~~eA~~~~~~al~~~~p---------~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~ 441 (1070)
..++++|.-+..+|.+-+.. ....+.+..+..++..|.+..|.++.++|.++.-..-+.+.......-+|.
T Consensus 175 l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aD 254 (518)
T KOG1941|consen 175 LKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFAD 254 (518)
T ss_pred HHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 99999998888887632211 112335566667888899999999999998875443334456677888999
Q ss_pred HHHhhcCCHHHHHHHHHHHHhh
Q 001486 442 LTYTTTGSADNARDILIDGIKH 463 (1070)
Q Consensus 442 ~~~~~~g~~e~Ar~iyekaL~~ 463 (1070)
+|. ..|+.|.|+.-||.|...
T Consensus 255 IyR-~~gd~e~af~rYe~Am~~ 275 (518)
T KOG1941|consen 255 IYR-SRGDLERAFRRYEQAMGT 275 (518)
T ss_pred HHH-hcccHhHHHHHHHHHHHH
Confidence 997 999999999999999865
No 198
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.43 E-value=0.00055 Score=60.05 Aligned_cols=73 Identities=16% Similarity=0.195 Sum_probs=59.5
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhc-cCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhh
Q 001486 390 SRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQR-KFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKH 463 (1070)
Q Consensus 390 p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~-~~~~~~~l~i~~A~~~~~~~g~~e~Ar~iyekaL~~ 463 (1070)
|+...++..++.++.+.|++++|+.+|+++++...... ..+....++.++|.++. ..|++++|.++|+++++.
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~-~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYY-RLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhh
Confidence 45677889999999999999999999999999842221 12234678899999998 999999999999999975
No 199
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.41 E-value=0.00027 Score=54.64 Aligned_cols=43 Identities=19% Similarity=0.281 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 001486 433 PLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLLLEELIK 476 (1070)
Q Consensus 433 ~~l~i~~A~~~~~~~g~~e~Ar~iyekaL~~~P~~~~lw~~y~~ 476 (1070)
|.+|+.+|.++. ..|++++|+++|+++|+.+|++..+|..++.
T Consensus 1 p~~~~~la~~~~-~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYR-RLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 357899999998 9999999999999999999999999998875
No 200
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.40 E-value=0.00082 Score=74.89 Aligned_cols=156 Identities=19% Similarity=0.110 Sum_probs=112.1
Q ss_pred HHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhhhchH--HHHHHHHHHHHhCCHHHH
Q 001486 300 EKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPV--IHLFNARYKEQIGDTSAA 377 (1070)
Q Consensus 300 ~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~--i~~~~a~~e~~~g~~~eA 377 (1070)
...|+++.|+.++.+. .+.++-.....++.+.+++|.|.+.++++.+. ..+..- +...|..+....+++.+|
T Consensus 113 ~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~-~eD~~l~qLa~awv~l~~g~e~~~~A 186 (290)
T PF04733_consen 113 FHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQI-DEDSILTQLAEAWVNLATGGEKYQDA 186 (290)
T ss_dssp CCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-SCCHHHHHHHHHHHHHHHTTTCCCHH
T ss_pred HHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHhCchhHHHH
Confidence 3457777666665543 55677777788889999999999999887654 222222 333333333334478999
Q ss_pred HHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhcCCH-HHHHHH
Q 001486 378 RAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSA-DNARDI 456 (1070)
Q Consensus 378 ~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~g~~-e~Ar~i 456 (1070)
..+|+... ...+.++.++...+.+...+|++++|.+++++|++. .+.++.++++++.+.. ..|+. +.+.+.
T Consensus 187 ~y~f~El~-~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~------~~~~~d~LaNliv~~~-~~gk~~~~~~~~ 258 (290)
T PF04733_consen 187 FYIFEELS-DKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK------DPNDPDTLANLIVCSL-HLGKPTEAAERY 258 (290)
T ss_dssp HHHHHHHH-CCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-------CCHHHHHHHHHHHHH-HTT-TCHHHHHH
T ss_pred HHHHHHHH-hccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh------ccCCHHHHHHHHHHHH-HhCCChhHHHHH
Confidence 99999976 444567788888999999999999999999999876 6888999999988877 67776 778888
Q ss_pred HHHHHhhCCCcHH
Q 001486 457 LIDGIKHVPNCKL 469 (1070)
Q Consensus 457 yekaL~~~P~~~~ 469 (1070)
+......+|+.+.
T Consensus 259 l~qL~~~~p~h~~ 271 (290)
T PF04733_consen 259 LSQLKQSNPNHPL 271 (290)
T ss_dssp HHHCHHHTTTSHH
T ss_pred HHHHHHhCCCChH
Confidence 8888778887664
No 201
>PRK15331 chaperone protein SicA; Provisional
Probab=97.38 E-value=0.0025 Score=63.34 Aligned_cols=102 Identities=15% Similarity=0.032 Sum_probs=91.3
Q ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhhhchHHHHH
Q 001486 284 LDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLF 363 (1070)
Q Consensus 284 ~~p~~~~~W~~yi~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~ 363 (1070)
++++.++....++--.-..|++++|..+|.-....++.+.+.|+.+|.++-..+.+++|+..|..|..+ .+++|...+.
T Consensus 32 is~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l-~~~dp~p~f~ 110 (165)
T PRK15331 32 IPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL-LKNDYRPVFF 110 (165)
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-ccCCCCccch
Confidence 456667777777766667999999999999999999999999999999999999999999999999986 6788888888
Q ss_pred HHHHHHHhCCHHHHHHHHHHHhh
Q 001486 364 NARYKEQIGDTSAARAAFPESYI 386 (1070)
Q Consensus 364 ~a~~e~~~g~~~eA~~~~~~al~ 386 (1070)
.|......|+.+.|+..|..+++
T Consensus 111 agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 111 TGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHh
Confidence 89999999999999999999984
No 202
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.34 E-value=0.33 Score=52.27 Aligned_cols=92 Identities=14% Similarity=0.093 Sum_probs=59.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhhhch-------------
Q 001486 292 WHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLP------------- 358 (1070)
Q Consensus 292 W~~yi~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p------------- 358 (1070)
..+.+.+.-+.|.++.|..-|..|+...+..+.+-++.|....+.++++.|.+.....++.-.++.|
T Consensus 147 ~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDv 226 (459)
T KOG4340|consen 147 QINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDV 226 (459)
T ss_pred hccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCch
Confidence 3334444456778888888888888888888888888888888888877766544444332111111
Q ss_pred ---------------HHHHHHHHHHHHhCCHHHHHHHHHH
Q 001486 359 ---------------VIHLFNARYKEQIGDTSAARAAFPE 383 (1070)
Q Consensus 359 ---------------~i~~~~a~~e~~~g~~~eA~~~~~~ 383 (1070)
......+.++.+.++++.|++.+..
T Consensus 227 rsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtD 266 (459)
T KOG4340|consen 227 RSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTD 266 (459)
T ss_pred hcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhc
Confidence 1222234457788999999887653
No 203
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.33 E-value=0.00044 Score=53.42 Aligned_cols=42 Identities=19% Similarity=0.299 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 001486 74 GYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCS 115 (1070)
Q Consensus 74 ~lW~~ya~~e~~~~~~e~A~~lferAL~~~P~s~~lW~~y~~ 115 (1070)
..|..++..+...|++++|+.+|+++|+.+|.+.++|..+++
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467777777777777777777777777777777777777654
No 204
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.30 E-value=0.016 Score=61.22 Aligned_cols=158 Identities=17% Similarity=0.108 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhhccC--hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHH
Q 001486 360 IHLFNARYKEQIGDTSAARAAFPESYIDSD--SRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYV 437 (1070)
Q Consensus 360 i~~~~a~~e~~~g~~~eA~~~~~~al~~~~--p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i 437 (1070)
.++..|......|++++|+..|++++.... +-...+++..+..+...|+++.|+..|++.++.++. .+..+.++.
T Consensus 7 ~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~---~~~~~~A~Y 83 (203)
T PF13525_consen 7 ALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPN---SPKADYALY 83 (203)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT----TTHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---CcchhhHHH
Confidence 344445555667777777777777663221 123455666666666777777777777777777432 233445555
Q ss_pred HHHHHHHh----------hcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCCcchhHHHHHHHHHhccCCccccc
Q 001486 438 QFSRLTYT----------TTGSADNARDILIDGIKHVPNCKLLLEELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKV 507 (1070)
Q Consensus 438 ~~A~~~~~----------~~g~~e~Ar~iyekaL~~~P~~~~lw~~y~~~e~~~g~~~~~~~ar~l~ekAl~~~~~~s~~ 507 (1070)
..|.+.+. ..+...+|+..|+..++.+|++.-.-..--.+ ..+...+.
T Consensus 84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l--------------~~l~~~la-------- 141 (203)
T PF13525_consen 84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRL--------------AELRNRLA-------- 141 (203)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHH--------------HHHHHHHH--------
T ss_pred HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHH--------------HHHHHHHH--------
Confidence 55554331 23345688999999999999876322111110 00111110
Q ss_pred CChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcc
Q 001486 508 FSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQHIKLFPHTVR 549 (1070)
Q Consensus 508 l~~~~~~~l~~~~~~~e~~~G~~~~a~~~~~ra~~~~p~~~~ 549 (1070)
+. + ..-++|-.+.|....|..-++.+++.+|++..
T Consensus 142 ---~~--e--~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~ 176 (203)
T PF13525_consen 142 ---EH--E--LYIARFYYKRGKYKAAIIRFQYVIENYPDTPA 176 (203)
T ss_dssp ---HH--H--HHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHH
T ss_pred ---HH--H--HHHHHHHHHcccHHHHHHHHHHHHHHCCCCch
Confidence 00 0 11234555678888888888888888888654
No 205
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.28 E-value=0.01 Score=61.62 Aligned_cols=148 Identities=14% Similarity=0.122 Sum_probs=92.3
Q ss_pred CCHHHHHHHHHHHhccC------CCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhhhchHHHHHHHHHHHHhCCHHH
Q 001486 303 GDFDWVVKLYERCLIPC------ADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSA 376 (1070)
Q Consensus 303 g~~~~a~~~yerAL~~~------p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~e 376 (1070)
+++++|.++|.+|-... -.-...++..|.++.+.|.-++|...|-.|... .+.++..+
T Consensus 28 ~k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~c----------------ykk~~~~e 91 (288)
T KOG1586|consen 28 NKYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANC----------------YKKVDPEE 91 (288)
T ss_pred cchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHH----------------hhccChHH
Confidence 35777777777774321 011223344444444444444444444333332 34456667
Q ss_pred HHHHHHHHhhccChh------hHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhcCC
Q 001486 377 ARAAFPESYIDSDSR------FIEKVTFKANMERR-LGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGS 449 (1070)
Q Consensus 377 A~~~~~~al~~~~p~------~~~~w~~~a~le~~-~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~g~ 449 (1070)
|..++++++ ++..+ -.+..+..+.+++. +.+++.|+..|+.|-+.+..........+.++..|.+-. ..+.
T Consensus 92 Av~cL~~ai-eIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa-~leq 169 (288)
T KOG1586|consen 92 AVNCLEKAI-EIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAA-QLEQ 169 (288)
T ss_pred HHHHHHHHH-HHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHH-HHHH
Confidence 777777666 22111 12334556665554 478999999999999998766655555678888888776 8999
Q ss_pred HHHHHHHHHHHHhhCCCcH
Q 001486 450 ADNARDILIDGIKHVPNCK 468 (1070)
Q Consensus 450 ~e~Ar~iyekaL~~~P~~~ 468 (1070)
+.+|.++|++..+..-++.
T Consensus 170 Y~~Ai~iyeqva~~s~~n~ 188 (288)
T KOG1586|consen 170 YSKAIDIYEQVARSSLDNN 188 (288)
T ss_pred HHHHHHHHHHHHHHhccch
Confidence 9999999999988765554
No 206
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.26 E-value=0.96 Score=56.08 Aligned_cols=219 Identities=16% Similarity=0.126 Sum_probs=119.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCC--------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHH
Q 001486 253 GEQIYKEASQLDEKINCFENLIRRPYFHVKPLD--------DIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPE 324 (1070)
Q Consensus 253 ~~~~y~~a~~~~~~~~~fE~ai~~~~~~~~~~~--------p~~~~~W~~yi~~~~~~g~~~~a~~~yerAL~~~p~~~~ 324 (1070)
..++|++|...+++......++.....++..++ -+...+|..++..-...|...+|++-|-|| +++.
T Consensus 1060 ~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps 1134 (1666)
T KOG0985|consen 1060 ENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPS 1134 (1666)
T ss_pred hhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcH
Confidence 455666666666655544444422111111111 133468999888888888888898888876 5667
Q ss_pred HHHHHHHHHHhhCChhHHHHHHHHHHHHHh-hh-chHHHHHHHHHHHHhCCHHH-------------HHHHHHHHhh---
Q 001486 325 FWMRYVDFMESKGGREIASYALDRATQIFL-KR-LPVIHLFNARYKEQIGDTSA-------------ARAAFPESYI--- 386 (1070)
Q Consensus 325 lW~~ya~~l~~~g~~e~A~~il~rAl~~~~-~~-~p~i~~~~a~~e~~~g~~~e-------------A~~~~~~al~--- 386 (1070)
-+.+......+.|++++-...+.-|.+... +. ...+-++||+.. +.+++++ .-++|+...-
T Consensus 1135 ~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~-rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aA 1213 (1666)
T KOG0985|consen 1135 NYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKTN-RLTELEEFIAGPNVANIQQVGDRCFEEKMYEAA 1213 (1666)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhc-hHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHH
Confidence 788888888889999888887777765421 11 124555555431 1111111 0112222110
Q ss_pred ccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH---------HhhccC----------CCcHHHHHHHHHHHHhhc
Q 001486 387 DSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETA---------AEQRKF----------HTLPLLYVQFSRLTYTTT 447 (1070)
Q Consensus 387 ~~~p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~---------~~~~~~----------~~~~~l~i~~A~~~~~~~ 447 (1070)
.+.-..+..|-+++..+..+|.+..|.+.-++|-..- -+...+ .-.++-.-.+...|. ..
T Consensus 1214 kl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq-~r 1292 (1666)
T KOG0985|consen 1214 KLLYSNVSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQ-DR 1292 (1666)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHH-hc
Confidence 0111334557777777777787777766655553220 000000 000111222333444 78
Q ss_pred CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 001486 448 GSADNARDILIDGIKHVPNCKLLLEELIKFT 478 (1070)
Q Consensus 448 g~~e~Ar~iyekaL~~~P~~~~lw~~y~~~e 478 (1070)
|.+++-+.++|-||-+..-...++-.++-+.
T Consensus 1293 GyFeElIsl~Ea~LGLERAHMgmfTELaiLY 1323 (1666)
T KOG0985|consen 1293 GYFEELISLLEAGLGLERAHMGMFTELAILY 1323 (1666)
T ss_pred CcHHHHHHHHHhhhchhHHHHHHHHHHHHHH
Confidence 9999999999999987655544444433333
No 207
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=97.26 E-value=0.0017 Score=62.15 Aligned_cols=107 Identities=21% Similarity=0.306 Sum_probs=70.5
Q ss_pred HHHHHHHhhcccCCCCCCCChHHHHHHHHHHHHHHHc----CCHHHHHHHHHHHhcc---------CCCCHHHHHHHHHH
Q 001486 266 KINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQ----GDFDWVVKLYERCLIP---------CADYPEFWMRYVDF 332 (1070)
Q Consensus 266 ~~~~fE~ai~~~~~~~~~~~p~~~~~W~~yi~~~~~~----g~~~~a~~~yerAL~~---------~p~~~~lW~~ya~~ 332 (1070)
.+..||..|.+.+. ..+.+..|..|+.|.+.+ |.-.....+++||+.. +|.+..+|+.|+.+
T Consensus 4 ~r~~~e~~i~~~~~-----~dDPL~~w~~yI~W~~~~~p~g~~~s~L~~lLerc~~~f~~~~~YknD~RyLkiWi~ya~~ 78 (125)
T smart00777 4 QRQAFEQELQDLYE-----GDDPLDLWLRYIKWTEENYPQGGKESGLLTLLERCIRYFEDDERYKNDPRYLKIWLKYADN 78 (125)
T ss_pred HHHHHHHHHHhccc-----CCCChHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHh
Confidence 34567777643332 234578999999998742 2445678888998864 45566889988875
Q ss_pred HHhhCChhHHHHHHHHHHHHH-hhhchHHHHHHHHHHHHhCCHHHHHHHHHH
Q 001486 333 MESKGGREIASYALDRATQIF-LKRLPVIHLFNARYKEQIGDTSAARAAFPE 383 (1070)
Q Consensus 333 l~~~g~~e~A~~il~rAl~~~-~~~~p~i~~~~a~~e~~~g~~~eA~~~~~~ 383 (1070)
. ++++++|.-....- -..++..|..||.+++..|++.+|.++|..
T Consensus 79 ~------~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 79 C------DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred c------CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 4 33555665444320 113456777888888888888888888764
No 208
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.25 E-value=0.2 Score=57.58 Aligned_cols=121 Identities=16% Similarity=0.262 Sum_probs=96.5
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC----CCCHHHHHHHHHHHHhhCChhHHHHHHHHHHH-HHhhh---
Q 001486 285 DDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPC----ADYPEFWMRYVDFMESKGGREIASYALDRATQ-IFLKR--- 356 (1070)
Q Consensus 285 ~p~~~~~W~~yi~~~~~~g~~~~a~~~yerAL~~~----p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~-~~~~~--- 356 (1070)
.......|..++....+.|.++.|..++.++.... ...+.+-+.++++++..|+.++|...++..+. .+...
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~ 221 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDS 221 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccc
Confidence 34556799999999999999999999999998743 22578889999999999999999999988887 21111
Q ss_pred -----------------------------chHHHHHHHHHHHHh------CCHHHHHHHHHHHhhccChhhHHHHHHHHH
Q 001486 357 -----------------------------LPVIHLFNARYKEQI------GDTSAARAAFPESYIDSDSRFIEKVTFKAN 401 (1070)
Q Consensus 357 -----------------------------~p~i~~~~a~~e~~~------g~~~eA~~~~~~al~~~~p~~~~~w~~~a~ 401 (1070)
...+++.+|.+.... +..+++...|..++ .+.+...+.|..++.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~-~~~~~~~k~~~~~a~ 300 (352)
T PF02259_consen 222 ISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEAT-KLDPSWEKAWHSWAL 300 (352)
T ss_pred ccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHH-HhChhHHHHHHHHHH
Confidence 124666777777666 88889999999998 777888889999988
Q ss_pred HHHHc
Q 001486 402 MERRL 406 (1070)
Q Consensus 402 le~~~ 406 (1070)
+..+.
T Consensus 301 ~~~~~ 305 (352)
T PF02259_consen 301 FNDKL 305 (352)
T ss_pred HHHHH
Confidence 76543
No 209
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.21 E-value=0.012 Score=67.50 Aligned_cols=70 Identities=11% Similarity=-0.047 Sum_probs=66.2
Q ss_pred CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHH---HHHHHHHHHhhCChhHHHHHHHHHHHH
Q 001486 283 PLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEF---WMRYVDFMESKGGREIASYALDRATQI 352 (1070)
Q Consensus 283 ~~~p~~~~~W~~yi~~~~~~g~~~~a~~~yerAL~~~p~~~~l---W~~ya~~l~~~g~~e~A~~il~rAl~~ 352 (1070)
+.+|+....|.+++..+...|++++|+..|++||..+|++.+. |+++|.+|...|++++|+..|++|++.
T Consensus 69 ~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 69 EADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4678999999999999999999999999999999999999865 999999999999999999999999986
No 210
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.16 E-value=0.18 Score=52.58 Aligned_cols=161 Identities=16% Similarity=0.107 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhh-----hchHHHHHHH
Q 001486 291 NWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLK-----RLPVIHLFNA 365 (1070)
Q Consensus 291 ~W~~yi~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~-----~~p~i~~~~a 365 (1070)
.+.+.+++..+.|+...+-..|-. .++.+ +.++.++|..++++|+.++.. .-..-++..|
T Consensus 56 aflkaA~~h~k~~skhDaat~Yve--------------A~~cy-kk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~ia 120 (288)
T KOG1586|consen 56 AFLKAADLHLKAGSKHDAATTYVE--------------AANCY-KKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIA 120 (288)
T ss_pred HHHHHHHHHHhcCCchhHHHHHHH--------------HHHHh-hccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHH
Confidence 444555555555655545444433 34444 345788999999999988542 1123455666
Q ss_pred HHHHH-hCCHHHHHHHHHHHhhc-----cChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcH-HHHHH
Q 001486 366 RYKEQ-IGDTSAARAAFPESYID-----SDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLP-LLYVQ 438 (1070)
Q Consensus 366 ~~e~~-~g~~~eA~~~~~~al~~-----~~p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~-~l~i~ 438 (1070)
++++. ..+++.|+..|+.+-+- .....-+.+++.+.+-..+|.+.+|+++|++....--.+.-.-... ..++.
T Consensus 121 EiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kdyflk 200 (288)
T KOG1586|consen 121 EIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLK 200 (288)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHH
Confidence 66544 58899999999988632 2223345577778888888999999999999877621111000111 23455
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHhhCCCc
Q 001486 439 FSRLTYTTTGSADNARDILIDGIKHVPNC 467 (1070)
Q Consensus 439 ~A~~~~~~~g~~e~Ar~iyekaL~~~P~~ 467 (1070)
.|.+.. ...|.-.|...+++....+|.-
T Consensus 201 AgLChl-~~~D~v~a~~ALeky~~~dP~F 228 (288)
T KOG1586|consen 201 AGLCHL-CKADEVNAQRALEKYQELDPAF 228 (288)
T ss_pred HHHHhH-hcccHHHHHHHHHHHHhcCCcc
Confidence 555554 6689999999999999999963
No 211
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=97.15 E-value=0.0007 Score=48.21 Aligned_cols=30 Identities=27% Similarity=0.722 Sum_probs=18.3
Q ss_pred CHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 001486 88 SIDKVVEVFERAVQSATYSVDVWFHYCSLS 117 (1070)
Q Consensus 88 ~~e~A~~lferAL~~~P~s~~lW~~y~~~~ 117 (1070)
+++.|+.+|++++..+|.++++|+.|++|+
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e 31 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYAEFE 31 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 345566666666666666666666666654
No 212
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.13 E-value=0.13 Score=58.57 Aligned_cols=176 Identities=13% Similarity=0.034 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcc----CCCCHHHHHHHHHHHHh---hCChhHHHHHHHHHHHHHhhhchHHHH
Q 001486 290 KNWHDYLSFAEKQGDFDWVVKLYERCLIP----CADYPEFWMRYVDFMES---KGGREIASYALDRATQIFLKRLPVIHL 362 (1070)
Q Consensus 290 ~~W~~yi~~~~~~g~~~~a~~~yerAL~~----~p~~~~lW~~ya~~l~~---~g~~e~A~~il~rAl~~~~~~~p~i~~ 362 (1070)
++-+.+.--+....+++..+.+.+..-.. .+....+-..||..+.+ .|+.++|+.++..++.......|++++
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g 221 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG 221 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence 34445555556667888888888876654 45677888889999998 889999999999977654556678888
Q ss_pred HHHHHHHH---------hCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCH----HHHHHHHHHHHHHHHhhccC
Q 001486 363 FNARYKEQ---------IGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNF----VAACDTYKEALETAAEQRKF 429 (1070)
Q Consensus 363 ~~a~~e~~---------~g~~~eA~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~----~~A~~vyekal~~~~~~~~~ 429 (1070)
.+|+++.. ....++|+..|.++. +++++. -.=++++.+....|.. .+.+++--+.-..+..+...
T Consensus 222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgF-e~~~~~-Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~ 299 (374)
T PF13281_consen 222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGF-EIEPDY-YSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSL 299 (374)
T ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHHH-cCCccc-cchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccc
Confidence 88876421 224788999999998 565533 2234566666655542 23333332222222222111
Q ss_pred CCcHHHH--HHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcH
Q 001486 430 HTLPLLY--VQFSRLTYTTTGSADNARDILIDGIKHVPNCK 468 (1070)
Q Consensus 430 ~~~~~l~--i~~A~~~~~~~g~~e~Ar~iyekaL~~~P~~~ 468 (1070)
......| ..++.+.. -.|++++|.+.++++++..|...
T Consensus 300 ~~~~dYWd~ATl~Ea~v-L~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 300 EKMQDYWDVATLLEASV-LAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred cccccHHHHHHHHHHHH-HcCCHHHHHHHHHHHhhcCCcch
Confidence 1222333 33334444 68999999999999998876443
No 213
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.12 E-value=0.016 Score=66.63 Aligned_cols=163 Identities=11% Similarity=0.023 Sum_probs=106.8
Q ss_pred cCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhh----hc--------------------
Q 001486 302 QGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLK----RL-------------------- 357 (1070)
Q Consensus 302 ~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~----~~-------------------- 357 (1070)
..++..-+++=.+||..+|+..++|+.+|. +....+.+|..+|++|++.-.. +.
T Consensus 181 ERnp~aRIkaA~eALei~pdCAdAYILLAE--EeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~ 258 (539)
T PF04184_consen 181 ERNPQARIKAAKEALEINPDCADAYILLAE--EEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVL 258 (539)
T ss_pred cCCHHHHHHHHHHHHHhhhhhhHHHhhccc--ccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchh
Confidence 456777888889999999999999998885 4455578999999999986211 00
Q ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHH
Q 001486 358 PVIHLFNARYKEQIGDTSAARAAFPESYIDSDS-RFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLY 436 (1070)
Q Consensus 358 p~i~~~~a~~e~~~g~~~eA~~~~~~al~~~~p-~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~ 436 (1070)
.-+...+|....+.|+.++|++.|+..+++.+. +...+...++..+...+.+.++.+++.+--+. ..|..+.+.
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi-----~lpkSAti~ 333 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI-----SLPKSATIC 333 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc-----cCCchHHHH
Confidence 012223455567889999999999888865544 45667777777777888888888877663221 012333333
Q ss_pred HHHHHHHHhhcCC---------------HHHHHHHHHHHHhhCCCcHHHH
Q 001486 437 VQFSRLTYTTTGS---------------ADNARDILIDGIKHVPNCKLLL 471 (1070)
Q Consensus 437 i~~A~~~~~~~g~---------------~e~Ar~iyekaL~~~P~~~~lw 471 (1070)
..-|.+.....+| ...|.+...||++.+|+.+.+.
T Consensus 334 YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YL 383 (539)
T PF04184_consen 334 YTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYL 383 (539)
T ss_pred HHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhh
Confidence 3333332211222 1346677888888888887643
No 214
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=97.10 E-value=0.0047 Score=59.09 Aligned_cols=104 Identities=13% Similarity=0.320 Sum_probs=71.0
Q ss_pred HHHHHHHHH-HHCC--CCHHHHHHHHHHHHHh---C-CHHHHHHHHHHHHHh---------cCCCHHHHHHHHHHHHhhC
Q 001486 58 IGLVYDSFL-AEFP--LCYGYWRKYADHKARL---C-SIDKVVEVFERAVQS---------ATYSVDVWFHYCSLSMSTF 121 (1070)
Q Consensus 58 a~~vyeraL-~~~P--~s~~lW~~ya~~e~~~---~-~~e~A~~lferAL~~---------~P~s~~lW~~y~~~~~~~~ 121 (1070)
.+..||+.| ...- +=-..|..|+++.... | .-.....+++||+.. +|..+++|+.|+++.
T Consensus 4 ~r~~~e~~i~~~~~~dDPL~~w~~yI~W~~~~~p~g~~~s~L~~lLerc~~~f~~~~~YknD~RyLkiWi~ya~~~---- 79 (125)
T smart00777 4 QRQAFEQELQDLYEGDDPLDLWLRYIKWTEENYPQGGKESGLLTLLERCIRYFEDDERYKNDPRYLKIWLKYADNC---- 79 (125)
T ss_pred HHHHHHHHHHhcccCCCChHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhc----
Confidence 345566555 2211 1246777777775532 2 234566777777765 366678999999883
Q ss_pred CChhHHHHHHHHHHHH-cCCCCCchHHHHHHHHHHHHcccHHHHHHHHHH
Q 001486 122 EDPNDVRRLFKRALSF-VGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQ 170 (1070)
Q Consensus 122 ~~~~~ar~vferAL~~-~p~~~~s~~lW~~yi~fe~~~~~~~~a~~iy~r 170 (1070)
++.+.+|...... +|. ....+|..|+.+.+..|++.+|.+||++
T Consensus 80 ---~dp~~if~~L~~~~IG~--~~AlfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 80 ---DEPRELFQFLYSKGIGT--KLALFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred ---CCHHHHHHHHHHCCcch--hhHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 2357788766543 344 3678999999999999999999999975
No 215
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.05 E-value=0.041 Score=63.39 Aligned_cols=68 Identities=12% Similarity=-0.087 Sum_probs=62.1
Q ss_pred cCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhhhchH---HHHHHHHHHHHhCCHHHHHHHHHHHhh
Q 001486 318 PCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPV---IHLFNARYKEQIGDTSAARAAFPESYI 386 (1070)
Q Consensus 318 ~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~---i~~~~a~~e~~~g~~~eA~~~~~~al~ 386 (1070)
..|++...|++++..|...|++++|+..|++|+++ .|+++. .|+..|..+...|++++|+..|++|++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL-~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL-NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999998 666664 499999999999999999999999994
No 216
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=97.04 E-value=0.00091 Score=47.59 Aligned_cols=32 Identities=22% Similarity=0.357 Sum_probs=30.1
Q ss_pred CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 001486 448 GSADNARDILIDGIKHVPNCKLLLEELIKFTM 479 (1070)
Q Consensus 448 g~~e~Ar~iyekaL~~~P~~~~lw~~y~~~e~ 479 (1070)
|+++.|+.+|+++++.+|.+..+|..|++|+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e~ 32 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEFEE 32 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHHHh
Confidence 57899999999999999999999999999985
No 217
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.04 E-value=0.0096 Score=63.92 Aligned_cols=107 Identities=15% Similarity=0.066 Sum_probs=84.5
Q ss_pred HHHHHHHHHhhCChhHHHHHHHHHHHHHhh--hchHHHHHHHHHHHHhCCHHHHHHHHHHHhhcc--ChhhHHHHHHHHH
Q 001486 326 WMRYVDFMESKGGREIASYALDRATQIFLK--RLPVIHLFNARYKEQIGDTSAARAAFPESYIDS--DSRFIEKVTFKAN 401 (1070)
Q Consensus 326 W~~ya~~l~~~g~~e~A~~il~rAl~~~~~--~~p~i~~~~a~~e~~~g~~~eA~~~~~~al~~~--~p~~~~~w~~~a~ 401 (1070)
.|..|.-+.+.|++.+|...|..-+..+.. ..++.++++++.....|++++|..+|.++.+.. .+..++..++++.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 344444466788899999999888887332 235788999999999999999999999998544 2355788999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHH
Q 001486 402 MERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQ 438 (1070)
Q Consensus 402 le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~ 438 (1070)
+..++|+.++|+.+|+..++.+ |..+..-..
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~Y------P~t~aA~~A 254 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRY------PGTDAAKLA 254 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHC------CCCHHHHHH
Confidence 9999999999999999999984 665554443
No 218
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.02 E-value=0.1 Score=60.31 Aligned_cols=119 Identities=11% Similarity=0.057 Sum_probs=81.2
Q ss_pred HhhCChhHHHHHHHHHHHHHhhhchHHHHHHHHHHHHhCCHHHHHHHHHHHhhccC-------------h--------h-
Q 001486 334 ESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSD-------------S--------R- 391 (1070)
Q Consensus 334 ~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~eA~~~~~~al~~~~-------------p--------~- 391 (1070)
|+..+...-++.-.+|+++ .++|+..|..+| |+....+.+|.++|+++++... + +
T Consensus 179 WRERnp~aRIkaA~eALei-~pdCAdAYILLA--EEeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt 255 (539)
T PF04184_consen 179 WRERNPQARIKAAKEALEI-NPDCADAYILLA--EEEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDT 255 (539)
T ss_pred HhcCCHHHHHHHHHHHHHh-hhhhhHHHhhcc--cccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhcccc
Confidence 4444566666777888887 666766666644 3446667888888888874110 0 0
Q ss_pred --hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 001486 392 --FIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDG 460 (1070)
Q Consensus 392 --~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~g~~e~Ar~iyeka 460 (1070)
...+-..++.+.+++|..++|++.|++.++.++. -..-.+..++..++. +.+.+.++.+++.+=
T Consensus 256 ~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~----~~~l~IrenLie~LL-elq~Yad~q~lL~kY 321 (539)
T PF04184_consen 256 NVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPN----LDNLNIRENLIEALL-ELQAYADVQALLAKY 321 (539)
T ss_pred chhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCc----cchhhHHHHHHHHHH-hcCCHHHHHHHHHHh
Confidence 1222345677888999999999999999987411 123457777777777 899999998887763
No 219
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.00 E-value=0.015 Score=58.90 Aligned_cols=97 Identities=13% Similarity=0.024 Sum_probs=74.9
Q ss_pred HHHhCCHHHHHHHHHHHhhccChhh----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHH
Q 001486 368 KEQIGDTSAARAAFPESYIDSDSRF----IEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLT 443 (1070)
Q Consensus 368 e~~~g~~~eA~~~~~~al~~~~p~~----~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~ 443 (1070)
+...|+|++|..-|..|++.|.+.. .-+|.+.+.+..+++..+.|+.-..+||++ .|...+++...|.+|
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel------~pty~kAl~RRAeay 178 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIEL------NPTYEKALERRAEAY 178 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc------CchhHHHHHHHHHHH
Confidence 4567788888888888874443211 123556677777888889999999999998 788888888889988
Q ss_pred HhhcCCHHHHHHHHHHHHhhCCCcHHHH
Q 001486 444 YTTTGSADNARDILIDGIKHVPNCKLLL 471 (1070)
Q Consensus 444 ~~~~g~~e~Ar~iyekaL~~~P~~~~lw 471 (1070)
. ....+++|..-|.+.++..|....+-
T Consensus 179 e-k~ek~eealeDyKki~E~dPs~~ear 205 (271)
T KOG4234|consen 179 E-KMEKYEEALEDYKKILESDPSRREAR 205 (271)
T ss_pred H-hhhhHHHHHHHHHHHHHhCcchHHHH
Confidence 8 78999999999999999999765433
No 220
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.99 E-value=0.014 Score=62.78 Aligned_cols=98 Identities=16% Similarity=0.125 Sum_probs=80.4
Q ss_pred HHhCCHHHHHHHHHHHhhccCh--hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhh
Q 001486 369 EQIGDTSAARAAFPESYIDSDS--RFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTT 446 (1070)
Q Consensus 369 ~~~g~~~eA~~~~~~al~~~~p--~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~ 446 (1070)
...|+|..|...|..-++..+. -...+.+-++......|+++.|..+|..+++.++ ..+.-++.++.+|.++. +
T Consensus 152 ~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P---~s~KApdallKlg~~~~-~ 227 (262)
T COG1729 152 YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYP---KSPKAPDALLKLGVSLG-R 227 (262)
T ss_pred HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCC---CCCCChHHHHHHHHHHH-H
Confidence 5688999999999998854421 2234455567777788999999999999999753 35677899999999998 9
Q ss_pred cCCHHHHHHHHHHHHhhCCCcHHH
Q 001486 447 TGSADNARDILIDGIKHVPNCKLL 470 (1070)
Q Consensus 447 ~g~~e~Ar~iyekaL~~~P~~~~l 470 (1070)
.|+.++|+.+|+..++.+|+....
T Consensus 228 l~~~d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 228 LGNTDEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred hcCHHHHHHHHHHHHHHCCCCHHH
Confidence 999999999999999999987653
No 221
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.98 E-value=0.018 Score=57.30 Aligned_cols=85 Identities=12% Similarity=0.135 Sum_probs=57.5
Q ss_pred CcHHHHHHHHHHHHHHCCCCH----------------------HHHHHHHHHHHHhCCHHHHHHHHHHHHHhcCCCHHHH
Q 001486 53 DDIEMIGLVYDSFLAEFPLCY----------------------GYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVW 110 (1070)
Q Consensus 53 ~~~~~a~~vyeraL~~~P~s~----------------------~lW~~ya~~e~~~~~~e~A~~lferAL~~~P~s~~lW 110 (1070)
++.+.+...+++++..+.+.+ .....++..+...+++++|..++.+++..+|.+..+|
T Consensus 20 ~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~ 99 (146)
T PF03704_consen 20 GDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAY 99 (146)
T ss_dssp T-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 556666677777776553322 2333344444556788888888999998888888899
Q ss_pred HHHHHHHHhhCCChhHHHHHHHHHHHHc
Q 001486 111 FHYCSLSMSTFEDPNDVRRLFKRALSFV 138 (1070)
Q Consensus 111 ~~y~~~~~~~~~~~~~ar~vferAL~~~ 138 (1070)
..+++.+... |+...|.++|+++.+.+
T Consensus 100 ~~lm~~~~~~-g~~~~A~~~Y~~~~~~l 126 (146)
T PF03704_consen 100 RLLMRALAAQ-GRRAEALRVYERYRRRL 126 (146)
T ss_dssp HHHHHHHHHT-T-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHC-cCHHHHHHHHHHHHHHH
Confidence 8888888888 88888888888776543
No 222
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.98 E-value=0.031 Score=62.23 Aligned_cols=139 Identities=16% Similarity=0.056 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHhhCC-------------hhHHHHHHHHHHHHHhhhchH------------HHHHHHHHHHHhCCHHHHH
Q 001486 324 EFWMRYVDFMESKGG-------------REIASYALDRATQIFLKRLPV------------IHLFNARYKEQIGDTSAAR 378 (1070)
Q Consensus 324 ~lW~~ya~~l~~~g~-------------~e~A~~il~rAl~~~~~~~p~------------i~~~~a~~e~~~g~~~eA~ 378 (1070)
.++++++.+|...|+ .++++..|++|++.+..+... .+-.++..+.-.|+|+.|+
T Consensus 136 RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai 215 (639)
T KOG1130|consen 136 RALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAI 215 (639)
T ss_pred HHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHH
Confidence 345556666655553 267788888888765433221 1111222234567888887
Q ss_pred HHHHHHhh---cc-C-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhcCCHHHH
Q 001486 379 AAFPESYI---DS-D-SRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNA 453 (1070)
Q Consensus 379 ~~~~~al~---~~-~-p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~g~~e~A 453 (1070)
..-+.-++ ++ + ..--+++.++++++.-+|+++.|.+.|++++.+..+-......+.....+|..|. ...++++|
T Consensus 216 ~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtyt-ll~e~~kA 294 (639)
T KOG1130|consen 216 HFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYT-LLKEVQKA 294 (639)
T ss_pred HHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHH-HHHHHHHH
Confidence 76554431 11 1 1223567778888888999999999999988875333222233445566777776 78889999
Q ss_pred HHHHHHHHhh
Q 001486 454 RDILIDGIKH 463 (1070)
Q Consensus 454 r~iyekaL~~ 463 (1070)
+.++.+-|++
T Consensus 295 I~Yh~rHLaI 304 (639)
T KOG1130|consen 295 ITYHQRHLAI 304 (639)
T ss_pred HHHHHHHHHH
Confidence 9998888765
No 223
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.97 E-value=0.82 Score=56.67 Aligned_cols=39 Identities=10% Similarity=0.047 Sum_probs=21.0
Q ss_pred HHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHH
Q 001486 366 RYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERR 405 (1070)
Q Consensus 366 ~~e~~~g~~~eA~~~~~~al~~~~p~~~~~w~~~a~le~~ 405 (1070)
.++...|-|++-+.+++.++ -+...+...+..++.++.+
T Consensus 1287 ~~Yq~rGyFeElIsl~Ea~L-GLERAHMgmfTELaiLYsk 1325 (1666)
T KOG0985|consen 1287 EYYQDRGYFEELISLLEAGL-GLERAHMGMFTELAILYSK 1325 (1666)
T ss_pred HHHHhcCcHHHHHHHHHhhh-chhHHHHHHHHHHHHHHHh
Confidence 44455666666666666665 3444444445555555444
No 224
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=96.97 E-value=0.0051 Score=66.68 Aligned_cols=106 Identities=12% Similarity=0.061 Sum_probs=79.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhhhchHHHHHHHHHHHHh
Q 001486 292 WHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQI 371 (1070)
Q Consensus 292 W~~yi~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~ 371 (1070)
..+.+.-+.++|+|++|+++|.+++...|.++.++.+.|..|.+..+|..|..-++.|+.+ .+..-..|...+..-...
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL-d~~Y~KAYSRR~~AR~~L 178 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL-DKLYVKAYSRRMQARESL 178 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh-hHHHHHHHHHHHHHHHHH
Confidence 4455666667899999999999999999999999999999998888888888888888875 333334444444555567
Q ss_pred CCHHHHHHHHHHHhhccChhhHHHHHHH
Q 001486 372 GDTSAARAAFPESYIDSDSRFIEKVTFK 399 (1070)
Q Consensus 372 g~~~eA~~~~~~al~~~~p~~~~~w~~~ 399 (1070)
|++.+|.+-+++++ ++.|.+.++--.+
T Consensus 179 g~~~EAKkD~E~vL-~LEP~~~ELkK~~ 205 (536)
T KOG4648|consen 179 GNNMEAKKDCETVL-ALEPKNIELKKSL 205 (536)
T ss_pred hhHHHHHHhHHHHH-hhCcccHHHHHHH
Confidence 88888888888888 6777655443333
No 225
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.95 E-value=0.0059 Score=57.49 Aligned_cols=92 Identities=24% Similarity=0.165 Sum_probs=60.7
Q ss_pred HHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhc
Q 001486 368 KEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTT 447 (1070)
Q Consensus 368 e~~~g~~~eA~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~ 447 (1070)
+...|+++.|++.|.+++ .+.|....+|.+.+..++-.|+.++|.+-+++|+++.++. ....-..|+.-|.++. ..
T Consensus 53 laE~g~Ld~AlE~F~qal-~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~--trtacqa~vQRg~lyR-l~ 128 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQAL-CLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ--TRTACQAFVQRGLLYR-LL 128 (175)
T ss_pred HHhccchHHHHHHHHHHH-HhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc--chHHHHHHHHHHHHHH-Hh
Confidence 345677777777777777 5566666777777777777777777777777777764222 1122356666666665 67
Q ss_pred CCHHHHHHHHHHHHhh
Q 001486 448 GSADNARDILIDGIKH 463 (1070)
Q Consensus 448 g~~e~Ar~iyekaL~~ 463 (1070)
|+.+.||.-|+.|-++
T Consensus 129 g~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQL 144 (175)
T ss_pred CchHHHHHhHHHHHHh
Confidence 7777777777777654
No 226
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.94 E-value=0.015 Score=58.96 Aligned_cols=58 Identities=14% Similarity=0.221 Sum_probs=39.5
Q ss_pred HHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001486 364 NARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALET 422 (1070)
Q Consensus 364 ~a~~e~~~g~~~eA~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~ 422 (1070)
.|....+++.++.|+.-..++| ++.|.+.+++.++|.++..+..++.|+.-|++.++.
T Consensus 140 raaa~iKl~k~e~aI~dcsKai-el~pty~kAl~RRAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 140 RAAALIKLRKWESAIEDCSKAI-ELNPTYEKALERRAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred hHHHHHHhhhHHHHHHHHHhhH-hcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 3344455666677777777777 666767777777777777777777777777777776
No 227
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=96.92 E-value=0.029 Score=64.46 Aligned_cols=120 Identities=18% Similarity=0.161 Sum_probs=96.4
Q ss_pred CCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhh---hchHHHHHHHHHHHHhCCHHHHHHHHHHHhh-ccC-----
Q 001486 319 CADYPEFWMRYVDFMESKGGREIASYALDRATQIFLK---RLPVIHLFNARYKEQIGDTSAARAAFPESYI-DSD----- 389 (1070)
Q Consensus 319 ~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~---~~p~i~~~~a~~e~~~g~~~eA~~~~~~al~-~~~----- 389 (1070)
.......|+.+++...+.|.++.|...+.++...... ..|.+.+.++++....|+-++|...++..++ .+.
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~ 221 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDS 221 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccc
Confidence 4455688999999999999999999999998875211 1578999999999999999999998887764 110
Q ss_pred ---------------------------hhhHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHHHHhhccCCCcHHHH
Q 001486 390 ---------------------------SRFIEKVTFKANMERRL------GNFVAACDTYKEALETAAEQRKFHTLPLLY 436 (1070)
Q Consensus 390 ---------------------------p~~~~~w~~~a~le~~~------g~~~~A~~vyekal~~~~~~~~~~~~~~l~ 436 (1070)
....+++..++.+.... +..+.+...|.+|++. .+...+.|
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~------~~~~~k~~ 295 (352)
T PF02259_consen 222 ISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKL------DPSWEKAW 295 (352)
T ss_pred ccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHh------ChhHHHHH
Confidence 12245677788877777 8899999999999998 57778899
Q ss_pred HHHHHHHH
Q 001486 437 VQFSRLTY 444 (1070)
Q Consensus 437 i~~A~~~~ 444 (1070)
..||.++.
T Consensus 296 ~~~a~~~~ 303 (352)
T PF02259_consen 296 HSWALFND 303 (352)
T ss_pred HHHHHHHH
Confidence 99998876
No 228
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=96.91 E-value=0.0031 Score=68.27 Aligned_cols=101 Identities=12% Similarity=0.004 Sum_probs=56.5
Q ss_pred HHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhcC
Q 001486 369 EQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTG 448 (1070)
Q Consensus 369 ~~~g~~~eA~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~g 448 (1070)
.+.|+|++|+.+|.+++ .+.|.++-++.+++..|.++..|..|..-++.|+.+ +....++|-..|..-. .+|
T Consensus 108 FKQgKy~EAIDCYs~~i-a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL------d~~Y~KAYSRR~~AR~-~Lg 179 (536)
T KOG4648|consen 108 FKQGKYEEAIDCYSTAI-AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL------DKLYVKAYSRRMQARE-SLG 179 (536)
T ss_pred hhccchhHHHHHhhhhh-ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh------hHHHHHHHHHHHHHHH-HHh
Confidence 44556666666666655 445544445555555555555555555555555555 2333445554444444 566
Q ss_pred CHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 001486 449 SADNARDILIDGIKHVPNCKLLLEELIKF 477 (1070)
Q Consensus 449 ~~e~Ar~iyekaL~~~P~~~~lw~~y~~~ 477 (1070)
.+.+|.+-||.+|++.|++.++-..|+++
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~ELkK~~a~i 208 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIELKKSLARI 208 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHHHHHHHHHh
Confidence 66666666666666666666555555444
No 229
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.90 E-value=0.0044 Score=54.29 Aligned_cols=65 Identities=17% Similarity=0.130 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHhhc---c---ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 001486 359 VIHLFNARYKEQIGDTSAARAAFPESYID---S---DSRFIEKVTFKANMERRLGNFVAACDTYKEALETA 423 (1070)
Q Consensus 359 ~i~~~~a~~e~~~g~~~eA~~~~~~al~~---~---~p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~ 423 (1070)
.++...|.++...|++++|+..|+++++. . .+..+.++...+.++...|++++|+.+|++|++.+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 34555555566666666666666666521 1 12346667888888888899999999999988873
No 230
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=96.82 E-value=0.0077 Score=60.55 Aligned_cols=93 Identities=15% Similarity=0.092 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHH
Q 001486 374 TSAARAAFPESYIDSDSRFIEKVTFKANMERRLG----------NFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLT 443 (1070)
Q Consensus 374 ~~eA~~~~~~al~~~~p~~~~~w~~~a~le~~~g----------~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~ 443 (1070)
|+.|++.++... ..+|...+.+++|+..+.++. -+++|+.-|++||.+ .|...+++..+|..+
T Consensus 7 FE~ark~aea~y-~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I------~P~~hdAlw~lGnA~ 79 (186)
T PF06552_consen 7 FEHARKKAEAAY-AKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI------NPNKHDALWCLGNAY 79 (186)
T ss_dssp HHHHHHHHHHHH-HH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-------TT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc------CCchHHHHHHHHHHH
Confidence 345555555554 445555666666665444332 234555556666666 677777777777766
Q ss_pred Hhhc-----------CCHHHHHHHHHHHHhhCCCcHHHHHHH
Q 001486 444 YTTT-----------GSADNARDILIDGIKHVPNCKLLLEEL 474 (1070)
Q Consensus 444 ~~~~-----------g~~e~Ar~iyekaL~~~P~~~~lw~~y 474 (1070)
. .. ..+++|..+|++|+...|++..++..+
T Consensus 80 t-s~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksL 120 (186)
T PF06552_consen 80 T-SLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSL 120 (186)
T ss_dssp H-HHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred H-HHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 5 32 236788888888888899887755543
No 231
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=96.80 E-value=0.056 Score=55.61 Aligned_cols=199 Identities=17% Similarity=0.159 Sum_probs=123.9
Q ss_pred CHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhhhchHHHHHHHHHHHHhCCHHHHHHHHHH
Q 001486 304 DFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPE 383 (1070)
Q Consensus 304 ~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~eA~~~~~~ 383 (1070)
+-++|..+|||.+ +|...|-.+.||.-|..++.+ .|+.|.++..++.++...|+++.|.++|..
T Consensus 61 ~eeRA~l~fERGv---------------lYDSlGL~~LAR~DftQaLai-~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds 124 (297)
T COG4785 61 DEERAQLLFERGV---------------LYDSLGLRALARNDFSQALAI-RPDMPEVFNYLGIYLTQAGNFDAAYEAFDS 124 (297)
T ss_pred hHHHHHHHHHhcc---------------hhhhhhHHHHHhhhhhhhhhc-CCCcHHHHHHHHHHHHhcccchHHHHHhhh
Confidence 4456777777764 344556667788888888887 778888888888888889999999999998
Q ss_pred HhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcH--HHHHHHHHHHHhhcCCHHHHHHHH-HHH
Q 001486 384 SYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLP--LLYVQFSRLTYTTTGSADNARDIL-IDG 460 (1070)
Q Consensus 384 al~~~~p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~--~l~i~~A~~~~~~~g~~e~Ar~iy-eka 460 (1070)
.+ +++|.+--+..+.+....-.|.+.-|..-|-+--.. ++.+| .+|+.+. + ..-+..+|+.-+ +|+
T Consensus 125 ~~-ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~------D~~DPfR~LWLYl~---E-~k~dP~~A~tnL~qR~ 193 (297)
T COG4785 125 VL-ELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQD------DPNDPFRSLWLYLN---E-QKLDPKQAKTNLKQRA 193 (297)
T ss_pred Hh-ccCCcchHHHhccceeeeecCchHhhHHHHHHHHhc------CCCChHHHHHHHHH---H-hhCCHHHHHHHHHHHH
Confidence 88 788876655555555444457777776665554443 34433 4566552 2 445666666543 344
Q ss_pred HhhCCCcHHHHHHHH-HHHHHcCCCcchhHHHHHHHHHhccCCcccccCChhhHHHHHHHHH---HHHHHhCCHHHHHHH
Q 001486 461 IKHVPNCKLLLEELI-KFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYL---QFLDLCGTIHDIRNA 536 (1070)
Q Consensus 461 L~~~P~~~~lw~~y~-~~e~~~g~~~~~~~ar~l~ekAl~~~~~~s~~l~~~~~~~l~~~~~---~~e~~~G~~~~a~~~ 536 (1070)
- ..+.+.|-.++ .|. .|... ...+++++..-.. -.....+.|-+.|. +.-...|++++|..+
T Consensus 194 ~---~~d~e~WG~~iV~~y--LgkiS----~e~l~~~~~a~a~-----~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~L 259 (297)
T COG4785 194 E---KSDKEQWGWNIVEFY--LGKIS----EETLMERLKADAT-----DNTSLAEHLTETYFYLGKYYLSLGDLDEATAL 259 (297)
T ss_pred H---hccHhhhhHHHHHHH--Hhhcc----HHHHHHHHHhhcc-----chHHHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 3 23456665443 333 34433 2467777764211 11123344444444 444567999999988
Q ss_pred HHHHHHh
Q 001486 537 WNQHIKL 543 (1070)
Q Consensus 537 ~~ra~~~ 543 (1070)
|+-++.-
T Consensus 260 fKLaian 266 (297)
T COG4785 260 FKLAVAN 266 (297)
T ss_pred HHHHHHH
Confidence 8776653
No 232
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.79 E-value=0.016 Score=54.69 Aligned_cols=53 Identities=19% Similarity=0.313 Sum_probs=40.1
Q ss_pred HHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHH
Q 001486 300 EKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQI 352 (1070)
Q Consensus 300 ~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~ 352 (1070)
.+.|+.+.|++.|.++|..+|....+|.+-+..+.-.|+.++|..-+++|+++
T Consensus 54 aE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleL 106 (175)
T KOG4555|consen 54 AEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALEL 106 (175)
T ss_pred HhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHh
Confidence 34677777777777777777777777777777777777777777777777765
No 233
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.73 E-value=0.2 Score=52.59 Aligned_cols=136 Identities=16% Similarity=0.123 Sum_probs=82.9
Q ss_pred HHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhhhchHHHHHHHHHHHHhCCHHH
Q 001486 297 SFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSA 376 (1070)
Q Consensus 297 ~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~e 376 (1070)
.+.++...+.++..+|+||.. .|...|..+.|...++||-++ .+..+.++
T Consensus 79 mLake~~klsEvvdl~eKAs~--------------lY~E~GspdtAAmaleKAak~----------------lenv~Pd~ 128 (308)
T KOG1585|consen 79 MLAKELSKLSEVVDLYEKASE--------------LYVECGSPDTAAMALEKAAKA----------------LENVKPDD 128 (308)
T ss_pred HHHHHHHHhHHHHHHHHHHHH--------------HHHHhCCcchHHHHHHHHHHH----------------hhcCCHHH
Confidence 333444556667777777643 456677777777777777765 23456677
Q ss_pred HHHHHHHHhhccCh-----hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhcCCHH
Q 001486 377 ARAAFPESYIDSDS-----RFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSAD 451 (1070)
Q Consensus 377 A~~~~~~al~~~~p-----~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~g~~e 451 (1070)
|+.+|.+++.-+.. --.+.+-..++++.+...+++|-..|.+-......-...+...+.++....++. ...|+.
T Consensus 129 AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L-~~~Dyv 207 (308)
T KOG1585|consen 129 ALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYL-YAHDYV 207 (308)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHh-hHHHHH
Confidence 77777777632211 113334455566666677777766665544433222223445566776666655 678999
Q ss_pred HHHHHHHHHHhh
Q 001486 452 NARDILIDGIKH 463 (1070)
Q Consensus 452 ~Ar~iyekaL~~ 463 (1070)
.|.++|+.....
T Consensus 208 ~aekc~r~~~qi 219 (308)
T KOG1585|consen 208 QAEKCYRDCSQI 219 (308)
T ss_pred HHHHHhcchhcC
Confidence 999999887654
No 234
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.69 E-value=0.037 Score=54.03 Aligned_cols=105 Identities=13% Similarity=0.037 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhhccC--hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHH
Q 001486 360 IHLFNARYKEQIGDTSAARAAFPESYIDSD--SRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYV 437 (1070)
Q Consensus 360 i~~~~a~~e~~~g~~~eA~~~~~~al~~~~--p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i 437 (1070)
.++.-|.-..+.|++++|++.|+.+..... +-...+-+.++..+...|+++.|+..|++-|++.+. .+..+-++.
T Consensus 12 ~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~---hp~vdYa~Y 88 (142)
T PF13512_consen 12 ELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPT---HPNVDYAYY 88 (142)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CCCccHHHH
Confidence 334444445667777777777776653221 112233344444455567777777777777777321 223334444
Q ss_pred HHHHHHHhhcCC---------------HHHHHHHHHHHHhhCCCcH
Q 001486 438 QFSRLTYTTTGS---------------ADNARDILIDGIKHVPNCK 468 (1070)
Q Consensus 438 ~~A~~~~~~~g~---------------~e~Ar~iyekaL~~~P~~~ 468 (1070)
..|.+.. .... ..+|+.-|++.|+.+|++.
T Consensus 89 ~~gL~~~-~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 89 MRGLSYY-EQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHHHHH-HHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCCh
Confidence 4444443 3322 6788888888888888875
No 235
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.67 E-value=0.12 Score=54.26 Aligned_cols=153 Identities=10% Similarity=-0.004 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhhhch-----HHHHH
Q 001486 289 LKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLP-----VIHLF 363 (1070)
Q Consensus 289 ~~~W~~yi~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p-----~i~~~ 363 (1070)
++.+.+-..++.+.|.++-|-..++||- + +.+..+.++|+.+|.|++.++..+.. .++-.
T Consensus 91 vdl~eKAs~lY~E~GspdtAAmaleKAa--------------k-~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk 155 (308)
T KOG1585|consen 91 VDLYEKASELYVECGSPDTAAMALEKAA--------------K-ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGK 155 (308)
T ss_pred HHHHHHHHHHHHHhCCcchHHHHHHHHH--------------H-HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 3444555556667788888888887773 3 33456789999999999998643321 23334
Q ss_pred HHHHHHHhCCHHHHHHHHHHHhh---cc--ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHH
Q 001486 364 NARYKEQIGDTSAARAAFPESYI---DS--DSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQ 438 (1070)
Q Consensus 364 ~a~~e~~~g~~~eA~~~~~~al~---~~--~p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~ 438 (1070)
.++++.+..++++|-..|.+-.. .+ .+...+.++..+.++.-..++..|.++|+.+... +....+......-+
T Consensus 156 ~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qi--p~f~~sed~r~len 233 (308)
T KOG1585|consen 156 CSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQI--PAFLKSEDSRSLEN 233 (308)
T ss_pred hhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcC--ccccChHHHHHHHH
Confidence 45678888889888777665431 11 1233455666555555567999999999987765 22223334445555
Q ss_pred HHHHHHhhcCCHHHHHHHHHHH
Q 001486 439 FSRLTYTTTGSADNARDILIDG 460 (1070)
Q Consensus 439 ~A~~~~~~~g~~e~Ar~iyeka 460 (1070)
+-.+| ..||.+.+.++..-.
T Consensus 234 LL~ay--d~gD~E~~~kvl~sp 253 (308)
T KOG1585|consen 234 LLTAY--DEGDIEEIKKVLSSP 253 (308)
T ss_pred HHHHh--ccCCHHHHHHHHcCh
Confidence 44443 689999988876443
No 236
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.63 E-value=0.25 Score=55.31 Aligned_cols=87 Identities=11% Similarity=-0.050 Sum_probs=50.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhC----CCcH--H
Q 001486 396 VTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHV----PNCK--L 469 (1070)
Q Consensus 396 w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~g~~e~Ar~iyekaL~~~----P~~~--~ 469 (1070)
.+.+++.+.-+.++.+|+.++.+-|.+..+-.+.......+..+|..+- ..|.-++|..+.++.++.. -.+. .
T Consensus 278 cYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~-alg~h~kAl~fae~hl~~s~ev~D~sgelT 356 (639)
T KOG1130|consen 278 CYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFN-ALGEHRKALYFAELHLRSSLEVNDTSGELT 356 (639)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHHhCCcchhhh
Confidence 3445555555556777777777766664333333334455566666665 7788888888888777642 1222 2
Q ss_pred HHHHHHHHHHHcCC
Q 001486 470 LLEELIKFTMVHGG 483 (1070)
Q Consensus 470 lw~~y~~~e~~~g~ 483 (1070)
.-..+.++.+..|-
T Consensus 357 ar~Nlsdl~~~lG~ 370 (639)
T KOG1130|consen 357 ARDNLSDLILELGQ 370 (639)
T ss_pred hhhhhHHHHHHhCC
Confidence 33455555555553
No 237
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=96.61 E-value=0.0026 Score=44.57 Aligned_cols=28 Identities=25% Similarity=0.587 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 001486 89 IDKVVEVFERAVQSATYSVDVWFHYCSLS 117 (1070)
Q Consensus 89 ~e~A~~lferAL~~~P~s~~lW~~y~~~~ 117 (1070)
++.|+.||+|.|..+| +++.|+.|++|+
T Consensus 3 ~dRAR~IyeR~v~~hp-~~k~WikyAkFE 30 (32)
T PF02184_consen 3 FDRARSIYERFVLVHP-EVKNWIKYAKFE 30 (32)
T ss_pred HHHHHHHHHHHHHhCC-CchHHHHHHHhh
Confidence 4566666666666543 466666666654
No 238
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=96.58 E-value=0.14 Score=52.87 Aligned_cols=170 Identities=15% Similarity=0.114 Sum_probs=106.9
Q ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhhhch--HHH
Q 001486 284 LDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLP--VIH 361 (1070)
Q Consensus 284 ~~p~~~~~W~~yi~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p--~i~ 361 (1070)
+.|+..+++.-++-++...|+++.|.+.|.-.++.+|.+.-..++-|..+.--|++..|..-+-+-... .|++| .+|
T Consensus 94 i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~-D~~DPfR~LW 172 (297)
T COG4785 94 IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQD-DPNDPFRSLW 172 (297)
T ss_pred cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhc-CCCChHHHHH
Confidence 567777888888888888899999999999999999988877777766666667787776666444443 45555 344
Q ss_pred HHHHHHHHHhCCHHHHHHHH-HHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcc-CCCcHHHHHHH
Q 001486 362 LFNARYKEQIGDTSAARAAF-PESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRK-FHTLPLLYVQF 439 (1070)
Q Consensus 362 ~~~a~~e~~~g~~~eA~~~~-~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~-~~~~~~l~i~~ 439 (1070)
+. +-+..-+..+|+.-+ +|+. ..+.+. |- |-..+.-+|.+ ....+++++.....++.. .....+.|+.+
T Consensus 173 LY---l~E~k~dP~~A~tnL~qR~~-~~d~e~---WG-~~iV~~yLgki-S~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL 243 (297)
T COG4785 173 LY---LNEQKLDPKQAKTNLKQRAE-KSDKEQ---WG-WNIVEFYLGKI-SEETLMERLKADATDNTSLAEHLTETYFYL 243 (297)
T ss_pred HH---HHHhhCCHHHHHHHHHHHHH-hccHhh---hh-HHHHHHHHhhc-cHHHHHHHHHhhccchHHHHHHHHHHHHHH
Confidence 44 334455677776644 4543 333222 21 11112222332 123345554443111000 11234678889
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHhhC
Q 001486 440 SRLTYTTTGSADNARDILIDGIKHV 464 (1070)
Q Consensus 440 A~~~~~~~g~~e~Ar~iyekaL~~~ 464 (1070)
|+.+. ..|++++|..+|+-|+..+
T Consensus 244 ~K~~l-~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 244 GKYYL-SLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHHh-ccccHHHHHHHHHHHHHHh
Confidence 99887 9999999999999998654
No 239
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.54 E-value=1.2 Score=47.52 Aligned_cols=136 Identities=6% Similarity=0.011 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHH
Q 001486 360 IHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQF 439 (1070)
Q Consensus 360 i~~~~a~~e~~~g~~~eA~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~ 439 (1070)
+-+.++.++...|+|.-....|.+.++..++..+.+...++.+-...||.+.|...|++.-+....-...-..--+..+.
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 33344445555555555555555555333233333444555555555666666666654433211000001111223333
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCCcchhHHHHHHHHHhc
Q 001486 440 SRLTYTTTGSADNARDILIDGIKHVPNCKLLLEELIKFTMVHGGRSHISIVDAVISNALY 499 (1070)
Q Consensus 440 A~~~~~~~g~~e~Ar~iyekaL~~~P~~~~lw~~y~~~e~~~g~~~~~~~ar~l~ekAl~ 499 (1070)
+.++. -.+++..|...|.+++..+|.++..-+.-+-+.+..|+..+ |...++.++.
T Consensus 259 a~i~l-g~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~D---AiK~~e~~~~ 314 (366)
T KOG2796|consen 259 AFLHL-GQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKD---ALKQLEAMVQ 314 (366)
T ss_pred hhhee-cccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHH---HHHHHHHHhc
Confidence 33333 45556666666666666655554444433333344444333 3345555554
No 240
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.49 E-value=0.094 Score=57.75 Aligned_cols=191 Identities=12% Similarity=0.005 Sum_probs=123.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhccCCC--C----HHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhh----hc-----hH
Q 001486 295 YLSFAEKQGDFDWVVKLYERCLIPCAD--Y----PEFWMRYVDFMESKGGREIASYALDRATQIFLK----RL-----PV 359 (1070)
Q Consensus 295 yi~~~~~~g~~~~a~~~yerAL~~~p~--~----~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~----~~-----p~ 359 (1070)
++......+-+.++.+.|++|+..--. + ..+++.++.++....++++|.....+|..+... +. ..
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 333444456788888999999864211 1 256888999999999999999999999987321 11 12
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhhcc-----ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHH
Q 001486 360 IHLFNARYKEQIGDTSAARAAFPESYIDS-----DSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPL 434 (1070)
Q Consensus 360 i~~~~a~~e~~~g~~~eA~~~~~~al~~~-----~p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~ 434 (1070)
+.+..+..+...|++-.|.+..+++.+-. .+-..+-..-++++++..|+.+.|..-|+.|......-.+......
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~ 287 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVE 287 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 44445556677888888888888876311 1234555677899999999999999999999887543333333445
Q ss_pred HHHHHHHHHHhhcCCHHH-----HHHHHHHHHhhCCC------cHHHHHHHHHHHHHcCCCcc
Q 001486 435 LYVQFSRLTYTTTGSADN-----ARDILIDGIKHVPN------CKLLLEELIKFTMVHGGRSH 486 (1070)
Q Consensus 435 l~i~~A~~~~~~~g~~e~-----Ar~iyekaL~~~P~------~~~lw~~y~~~e~~~g~~~~ 486 (1070)
+....|+++. ...-..+ |.++-+++++.... ...+....+.+.+..|..+.
T Consensus 288 al~g~Akc~~-~~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~ 349 (518)
T KOG1941|consen 288 ALDGAAKCLE-TLRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDE 349 (518)
T ss_pred HHHHHHHHHH-HHHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhH
Confidence 6666666655 3333333 66666666664322 11344455555555554443
No 241
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.47 E-value=3.1 Score=53.04 Aligned_cols=57 Identities=16% Similarity=0.254 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHH
Q 001486 291 NWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRAT 350 (1070)
Q Consensus 291 ~W~~yi~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl 350 (1070)
.|-...++.+++|-+.+|..+|.--.. ....++..||..+.....+++|.-.|+++-
T Consensus 910 ~~~e~~n~I~kh~Ly~~aL~ly~~~~e---~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~G 966 (1265)
T KOG1920|consen 910 YFPECKNYIKKHGLYDEALALYKPDSE---KQKVIYEAYADHLREELMSDEAALMYERCG 966 (1265)
T ss_pred ccHHHHHHHHhcccchhhhheeccCHH---HHHHHHHHHHHHHHHhccccHHHHHHHHhc
Confidence 444555566677755555444432211 234667788888888887777766665544
No 242
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.47 E-value=0.14 Score=54.27 Aligned_cols=135 Identities=16% Similarity=0.065 Sum_probs=101.2
Q ss_pred HHHHHHHHhhCChhHHHHHHHHHHHHHhhhchHHHHHHHHHHHHhCCHHHHHHHHHHHhhc---cC--hhhHHHHHHHHH
Q 001486 327 MRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYID---SD--SRFIEKVTFKAN 401 (1070)
Q Consensus 327 ~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~eA~~~~~~al~~---~~--p~~~~~w~~~a~ 401 (1070)
+.|+.++.-.+.+.-....+.+.++...+..|.+.-.++.+-..-|+.+.|...|++.-+. ++ .....+..+.+.
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 4455566666667677777777777644556777777888888899999888888865321 11 122344555666
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcH
Q 001486 402 MERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCK 468 (1070)
Q Consensus 402 le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~g~~e~Ar~iyekaL~~~P~~~ 468 (1070)
++.-.+++..|...|.+++.. ++.++.+..+.|.|+. -.|+..+|.+..+.++...|...
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~------D~~~~~a~NnKALcll-Ylg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRM------DPRNAVANNNKALCLL-YLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred heecccchHHHHHHHhhcccc------CCCchhhhchHHHHHH-HHHHHHHHHHHHHHHhccCCccc
Confidence 666668999999999999998 6778888888888887 89999999999999999999643
No 243
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.43 E-value=2.3 Score=47.89 Aligned_cols=219 Identities=16% Similarity=0.063 Sum_probs=143.9
Q ss_pred HcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHH--Hhhhch----HHHHHHHHHHHHhCCH
Q 001486 301 KQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQI--FLKRLP----VIHLFNARYKEQIGDT 374 (1070)
Q Consensus 301 ~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~--~~~~~p----~i~~~~a~~e~~~g~~ 374 (1070)
..|+.+-++.+-++|-..-|.-.-.|.....-....|+++.|+.+.+..... ..++.. .+.+..--...-..+.
T Consensus 166 r~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp 245 (531)
T COG3898 166 RLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADP 245 (531)
T ss_pred hcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCCh
Confidence 4688888888888888888888888888888888889999998888765543 122211 1222211222334455
Q ss_pred HHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhcCCHHHHH
Q 001486 375 SAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNAR 454 (1070)
Q Consensus 375 ~eA~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~g~~e~Ar 454 (1070)
..|+..-..+. .+.|++...-+.-+..+.+.|++-++-++++.+.+. .-.+.++..|-. . +.|+.-..|
T Consensus 246 ~~Ar~~A~~a~-KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~-------ePHP~ia~lY~~--a-r~gdta~dR 314 (531)
T COG3898 246 ASARDDALEAN-KLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA-------EPHPDIALLYVR--A-RSGDTALDR 314 (531)
T ss_pred HHHHHHHHHHh-hcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc-------CCChHHHHHHHH--h-cCCCcHHHH
Confidence 66777766676 677777777677777777888888999999988886 234555554432 2 566654443
Q ss_pred HH-HHHHHhhCCCcHHHHHHHHHHHHHcCCCcchhHHHHHHHHHhccCCcccccCChhhHHHHHHHHHHHHHHh-CCHHH
Q 001486 455 DI-LIDGIKHVPNCKLLLEELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDLC-GTIHD 532 (1070)
Q Consensus 455 ~i-yekaL~~~P~~~~lw~~y~~~e~~~g~~~~~~~ar~l~ekAl~~~~~~s~~l~~~~~~~l~~~~~~~e~~~-G~~~~ 532 (1070)
-- .++.....|++.+--+..++-...-|++.. +|.--|.+... +-.+.++.+..+.|+-. |+-.+
T Consensus 315 lkRa~~L~slk~nnaes~~~va~aAlda~e~~~---ARa~Aeaa~r~----------~pres~~lLlAdIeeAetGDqg~ 381 (531)
T COG3898 315 LKRAKKLESLKPNNAESSLAVAEAALDAGEFSA---ARAKAEAAARE----------APRESAYLLLADIEEAETGDQGK 381 (531)
T ss_pred HHHHHHHHhcCccchHHHHHHHHHHHhccchHH---HHHHHHHHhhh----------CchhhHHHHHHHHHhhccCchHH
Confidence 22 223333567777665555555555565544 44555555432 23567888889999754 99999
Q ss_pred HHHHHHHHHHh
Q 001486 533 IRNAWNQHIKL 543 (1070)
Q Consensus 533 a~~~~~ra~~~ 543 (1070)
++..+.++.+.
T Consensus 382 vR~wlAqav~A 392 (531)
T COG3898 382 VRQWLAQAVKA 392 (531)
T ss_pred HHHHHHHHhcC
Confidence 99999888776
No 244
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.43 E-value=0.0025 Score=46.19 Aligned_cols=33 Identities=15% Similarity=0.221 Sum_probs=29.9
Q ss_pred HHHHHhccCCCCHHHHHHHHHHHHhhCChhHHH
Q 001486 311 LYERCLIPCADYPEFWMRYVDFMESKGGREIAS 343 (1070)
Q Consensus 311 ~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~ 343 (1070)
+|+|||+.+|++..+|+.+|.+|...|++++|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 488999999999999999999999999998886
No 245
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=96.39 E-value=0.0043 Score=43.49 Aligned_cols=30 Identities=23% Similarity=0.532 Sum_probs=27.0
Q ss_pred cHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q 001486 54 DIEMIGLVYDSFLAEFPLCYGYWRKYADHKA 84 (1070)
Q Consensus 54 ~~~~a~~vyeraL~~~P~s~~lW~~ya~~e~ 84 (1070)
.+++||.+|||++...|. ++.|+.|+++|.
T Consensus 2 E~dRAR~IyeR~v~~hp~-~k~WikyAkFEe 31 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPE-VKNWIKYAKFEE 31 (32)
T ss_pred hHHHHHHHHHHHHHhCCC-chHHHHHHHhhc
Confidence 478999999999999975 899999999984
No 246
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.28 E-value=8.3 Score=52.89 Aligned_cols=246 Identities=11% Similarity=0.116 Sum_probs=140.7
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhhhc-------h
Q 001486 286 DIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRL-------P 358 (1070)
Q Consensus 286 p~~~~~W~~yi~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~-------p 358 (1070)
..-.+.|..++++.+..|.+++|....-.|.+.. -+++.++.|+++|..|+...|..+++..++...+++ |
T Consensus 1667 ~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p 1744 (2382)
T KOG0890|consen 1667 SRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTP 1744 (2382)
T ss_pred chhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccc
Confidence 3456799999999999999999999888887654 678999999999999999999999999998755442 1
Q ss_pred ---------HHHHHHHHHHHHhCCHH--HHHHHHHHHhhccChhhHHHHHH----HHHHH--------HHcCCHHH---H
Q 001486 359 ---------VIHLFNARYKEQIGDTS--AARAAFPESYIDSDSRFIEKVTF----KANME--------RRLGNFVA---A 412 (1070)
Q Consensus 359 ---------~i~~~~a~~e~~~g~~~--eA~~~~~~al~~~~p~~~~~w~~----~a~le--------~~~g~~~~---A 412 (1070)
.+.+..+.+.+..++++ ...+.|..+. ++.+...+-++. +..++ ++.|++.. +
T Consensus 1745 ~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~-ail~ewe~~hy~l~~yy~kll~~~~~~~~E~~g~~~~~l~~ 1823 (2382)
T KOG0890|consen 1745 QSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAK-AILPEWEDKHYHLGKYYDKLLEDYKSNKMEKSGRVLSLLKA 1823 (2382)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHH-HHcccccCceeeHHHHHHHHhhhhhcccccccccHHHHHHH
Confidence 24445566666777643 4566777776 444411111111 11111 22355555 3
Q ss_pred HHHHHHHHHHHHhhcc---CCCcHHHHHHHHHHHHh--hcC-------CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 001486 413 CDTYKEALETAAEQRK---FHTLPLLYVQFSRLTYT--TTG-------SADNARDILIDGIKHVPNCKLLLEELIKFTMV 480 (1070)
Q Consensus 413 ~~vyekal~~~~~~~~---~~~~~~l~i~~A~~~~~--~~g-------~~e~Ar~iyekaL~~~P~~~~lw~~y~~~e~~ 480 (1070)
.--|.+++.. +.... .|..-.+|+.+|..... ..+ +.+.--+..+.+++..|.. .++-.|..+..+
T Consensus 1824 ~~~~~~sl~y-g~~~iyqsmPRllTLWLD~~t~~~~~ek~~r~ei~s~~~~~in~~i~~~~~~lp~Y-~f~ta~sQLlSR 1901 (2382)
T KOG0890|consen 1824 IYFFGRALYY-GNQHLYQSMPRLLTLWLDIGTHISSVEKAPRGEIVSKNLKLINSLIEEALEHLPTY-QFYTAYSQLLSR 1901 (2382)
T ss_pred HHHHHHHHHh-cchhHHHhhhHHHHHHHhhcchhcccccCChhhhhhhhHHHHHHHHHHHHHhCcch-HHHHHHHHHHHH
Confidence 3344465553 11111 22333467776554331 112 2334445566666667632 344567777776
Q ss_pred cCCC--cchhHHHHHHHHHhccCCcccccCChhhHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHhCCC
Q 001486 481 HGGR--SHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDL-CGTIHDIRNAWNQHIKLFPH 546 (1070)
Q Consensus 481 ~g~~--~~~~~ar~l~ekAl~~~~~~s~~l~~~~~~~l~~~~~~~e~~-~G~~~~a~~~~~ra~~~~p~ 546 (1070)
.... +-+..++.++-+.+..-| ...+|...+-+--. --..++.+.++.++...-++
T Consensus 1902 icH~~~dV~~vl~~II~~l~~~YP----------qq~lW~~~a~~kS~~p~R~~R~keIL~k~~~~~~~ 1960 (2382)
T KOG0890|consen 1902 ICHPNQDVARVLKHIIAKLVLAYP----------QQTLWQSAALSKSNVPSRVERCKEILTKSRRQKPD 1960 (2382)
T ss_pred HcCCchHHHHHHHHHHHHHHHhCc----------hHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcc
Confidence 5433 223334444444444322 24577666544321 12334445555544444333
No 247
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.26 E-value=0.31 Score=48.27 Aligned_cols=106 Identities=17% Similarity=0.066 Sum_probs=74.5
Q ss_pred HHcCCHHHHHHHHHHHhccCCCC-----H-HHHHHHHHHHHhhCChhHHHHHHHHHHHHHhhhchHHHHHHHHHHHHhCC
Q 001486 300 EKQGDFDWVVKLYERCLIPCADY-----P-EFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGD 373 (1070)
Q Consensus 300 ~~~g~~~~a~~~yerAL~~~p~~-----~-~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~ 373 (1070)
...|+...+...+++++...... . .-|+. ..+..++.... .+...++..+...|+
T Consensus 17 ~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~------------~~r~~l~~~~~-------~~~~~l~~~~~~~~~ 77 (146)
T PF03704_consen 17 ARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVE------------PERERLRELYL-------DALERLAEALLEAGD 77 (146)
T ss_dssp HHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHH------------HHHHHHHHHHH-------HHHHHHHHHHHHTT-
T ss_pred HHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHH------------HHHHHHHHHHH-------HHHHHHHHHHHhccC
Confidence 44678888999999999754221 1 12332 22233333222 244556677788999
Q ss_pred HHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 001486 374 TSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAE 425 (1070)
Q Consensus 374 ~~eA~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~ 425 (1070)
+++|..++.+++ ..+|-.-.+|..++.++...|+...|+.+|+++...+..
T Consensus 78 ~~~a~~~~~~~l-~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~ 128 (146)
T PF03704_consen 78 YEEALRLLQRAL-ALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLRE 128 (146)
T ss_dssp HHHHHHHHHHHH-HHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 999999999999 788988999999999999999999999999999887643
No 248
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.05 E-value=0.97 Score=48.21 Aligned_cols=188 Identities=15% Similarity=0.034 Sum_probs=124.3
Q ss_pred cCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhC-ChhHHHHHHHHHHHHHhhhchHHHHHHHHHHHHhCCHH-HHHH
Q 001486 302 QGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKG-GREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTS-AARA 379 (1070)
Q Consensus 302 ~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g-~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~-eA~~ 379 (1070)
...-.+|..+-+.||..+|-+.++|.---.++...+ ++.+-.+.+++.+.- .+++--+|-..-.+.+..|+.. +-++
T Consensus 56 ~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~-npKNYQvWHHRr~ive~l~d~s~rELe 134 (318)
T KOG0530|consen 56 NEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIED-NPKNYQVWHHRRVIVELLGDPSFRELE 134 (318)
T ss_pred cccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHh-CccchhHHHHHHHHHHHhcCcccchHH
Confidence 445678999999999999999999976666665554 455666777777765 4444467777667777788776 6677
Q ss_pred HHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhcCC-----HHHHH
Q 001486 380 AFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGS-----ADNAR 454 (1070)
Q Consensus 380 ~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~g~-----~e~Ar 454 (1070)
+.++++ ..+.++..+|-..-=+.+..++++.-.+...+.|+. +..+-.+|..--.+.....|- ++.-.
T Consensus 135 f~~~~l-~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~------Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El 207 (318)
T KOG0530|consen 135 FTKLML-DDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEE------DIRNNSAWNQRYFVITNTKGVISKAELEREL 207 (318)
T ss_pred HHHHHH-hccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHH------hhhccchhheeeEEEEeccCCccHHHHHHHH
Confidence 778877 566777788877766777778888888888888876 222233333211110001222 23345
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHHHH-cCCCcchhHHHHHHHHHh
Q 001486 455 DILIDGIKHVPNCKLLLEELIKFTMV-HGGRSHISIVDAVISNAL 498 (1070)
Q Consensus 455 ~iyekaL~~~P~~~~lw~~y~~~e~~-~g~~~~~~~ar~l~ekAl 498 (1070)
.+..+.|...|++...|..+.-+... .| ...--.+....+..+
T Consensus 208 ~yt~~~I~~vP~NeSaWnYL~G~l~~d~g-l~s~s~vv~f~~~l~ 251 (318)
T KOG0530|consen 208 NYTKDKILLVPNNESAWNYLKGLLELDSG-LSSDSKVVSFVENLY 251 (318)
T ss_pred HHHHHHHHhCCCCccHHHHHHHHHHhccC-CcCCchHHHHHHHHh
Confidence 56778888999999999988888775 44 221122344555544
No 249
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=95.97 E-value=0.077 Score=55.48 Aligned_cols=99 Identities=14% Similarity=0.147 Sum_probs=83.0
Q ss_pred CcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChhHHHHHHH
Q 001486 53 DDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFK 132 (1070)
Q Consensus 53 ~~~~~a~~vyeraL~~~P~s~~lW~~ya~~e~~~~~~e~A~~lferAL~~~P~s~~lW~~y~~~~~~~~~~~~~ar~vfe 132 (1070)
..+..|+..|-||+.+.|+...+|.+-|.-+++.++++.+..-..||+.+.|..++.-..+..+.+.. ..++.++.++.
T Consensus 24 k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s-~~~~eaI~~Lq 102 (284)
T KOG4642|consen 24 KRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQS-KGYDEAIKVLQ 102 (284)
T ss_pred hhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhh-ccccHHHHHHH
Confidence 35677888999999999999999999999999999999999999999999999999888888888877 88999999999
Q ss_pred HHHHHc---CCCCCchHHHHHHHH
Q 001486 133 RALSFV---GKDYLCHTMWDKYIE 153 (1070)
Q Consensus 133 rAL~~~---p~~~~s~~lW~~yi~ 153 (1070)
||.... +..+ ...||....+
T Consensus 103 ra~sl~r~~~~~~-~~di~~~L~~ 125 (284)
T KOG4642|consen 103 RAYSLLREQPFTF-GDDIPKALRD 125 (284)
T ss_pred HHHHHHhcCCCCC-cchHHHHHHH
Confidence 996654 2222 4577766554
No 250
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.95 E-value=0.56 Score=53.57 Aligned_cols=186 Identities=14% Similarity=0.089 Sum_probs=100.5
Q ss_pred CHHHHHHHHHHHHhhCChhHHHHHHHHHHHHH---hhhchHHHHHHHHHHHH---hCCHHHHHHHHHHHhhccChhhHHH
Q 001486 322 YPEFWMRYVDFMESKGGREIASYALDRATQIF---LKRLPVIHLFNARYKEQ---IGDTSAARAAFPESYIDSDSRFIEK 395 (1070)
Q Consensus 322 ~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~---~~~~p~i~~~~a~~e~~---~g~~~eA~~~~~~al~~~~p~~~~~ 395 (1070)
..++-+.+...|....+++..+.+.+..-.+. ..+.+.+-+.||..+.+ .|+.++|+.++..++........++
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 44556666666777777888877776655431 12345677788888877 8888889888888664555555666
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 001486 396 VTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLLLEELI 475 (1070)
Q Consensus 396 w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~g~~e~Ar~iyekaL~~~P~~~~lw~~y~ 475 (1070)
+..+|.+++.. |..+ .. .....+++|...|.+|.+..|+-.. =++++
T Consensus 220 ~gL~GRIyKD~---------~~~s---------~~--------------~d~~~ldkAi~~Y~kgFe~~~~~Y~-GIN~A 266 (374)
T PF13281_consen 220 LGLLGRIYKDL---------FLES---------NF--------------TDRESLDKAIEWYRKGFEIEPDYYS-GINAA 266 (374)
T ss_pred HHHHHHHHHHH---------HHHc---------Cc--------------cchHHHHHHHHHHHHHHcCCccccc-hHHHH
Confidence 66666655432 1100 00 0122256667777777766653221 23444
Q ss_pred HHHHHcCCCcc-hhHHHHHH---HHHhccCCcccccCChhhHHHHHHHHHHHH--HHhCCHHHHHHHHHHHHHhCCC
Q 001486 476 KFTMVHGGRSH-ISIVDAVI---SNALYSRPDVLKVFSLEDVEDISSLYLQFL--DLCGTIHDIRNAWNQHIKLFPH 546 (1070)
Q Consensus 476 ~~e~~~g~~~~-~~~ar~l~---ekAl~~~~~~s~~l~~~~~~~l~~~~~~~e--~~~G~~~~a~~~~~ra~~~~p~ 546 (1070)
.++...|.... ..+++.+. ...+.+. +.+ +.....|...--+| -..|+.+.+..+++++.++.|.
T Consensus 267 tLL~~~g~~~~~~~el~~i~~~l~~llg~k----g~~--~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~ 337 (374)
T PF13281_consen 267 TLLMLAGHDFETSEELRKIGVKLSSLLGRK----GSL--EKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPP 337 (374)
T ss_pred HHHHHcCCcccchHHHHHHHHHHHHHHHhh----ccc--cccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence 44444443211 11122222 1111000 001 12234454433333 3568888888888888887655
No 251
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=95.91 E-value=0.0087 Score=43.34 Aligned_cols=32 Identities=9% Similarity=0.094 Sum_probs=18.1
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHH
Q 001486 62 YDSFLAEFPLCYGYWRKYADHKARLCSIDKVV 93 (1070)
Q Consensus 62 yeraL~~~P~s~~lW~~ya~~e~~~~~~e~A~ 93 (1070)
|+|+|+.+|+++..|..++.++...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 45555555555555555555555555555543
No 252
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.89 E-value=0.46 Score=50.80 Aligned_cols=162 Identities=16% Similarity=0.019 Sum_probs=112.3
Q ss_pred HHHHHH-HHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhhhchHH----HHHHH
Q 001486 291 NWHDYL-SFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVI----HLFNA 365 (1070)
Q Consensus 291 ~W~~yi-~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i----~~~~a 365 (1070)
+|.-.+ .++...|++++|..+..+. ..-++...-..++.+..++|-|+..+++...+ +...+ -..|.
T Consensus 109 i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv 180 (299)
T KOG3081|consen 109 IDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWV 180 (299)
T ss_pred HHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHH
Confidence 455443 4666788999999888773 23344444455667777889999999888876 12222 22344
Q ss_pred HHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHh
Q 001486 366 RYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYT 445 (1070)
Q Consensus 366 ~~e~~~g~~~eA~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~ 445 (1070)
.+-...+.+.+|.-+|+...+.. +.++.+....+.+...+|++++|..+++.||.. .+.++...+++.-+-.
T Consensus 181 ~la~ggek~qdAfyifeE~s~k~-~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k------d~~dpetL~Nliv~a~- 252 (299)
T KOG3081|consen 181 KLATGGEKIQDAFYIFEELSEKT-PPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK------DAKDPETLANLIVLAL- 252 (299)
T ss_pred HHhccchhhhhHHHHHHHHhccc-CCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc------cCCCHHHHHHHHHHHH-
Confidence 44444567889999999887434 445777888888999999999999999999998 6788998888877655
Q ss_pred hcCCHHHHH-HHHHHHHhhCCCcH
Q 001486 446 TTGSADNAR-DILIDGIKHVPNCK 468 (1070)
Q Consensus 446 ~~g~~e~Ar-~iyekaL~~~P~~~ 468 (1070)
..|.-.++. +.........|..+
T Consensus 253 ~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 253 HLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred HhCCChHHHHHHHHHHHhcCCcch
Confidence 666654444 44444444566544
No 253
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.86 E-value=1.1 Score=48.21 Aligned_cols=182 Identities=15% Similarity=0.066 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC---CHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhhhchH-HHHH
Q 001486 288 QLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCAD---YPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPV-IHLF 363 (1070)
Q Consensus 288 ~~~~W~~yi~~~~~~g~~~~a~~~yerAL~~~p~---~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~-i~~~ 363 (1070)
..+.|.+-+.-+...|++++|+..|++....+|. ...+-+.++..+.+.++++.|+..++|-+.. .|..|+ -|..
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l-yP~~~n~dY~~ 111 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL-YPTHPNADYAY 111 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CCCCCChhHHH
Confidence 3467777787778899999999999999976554 4677888888899999999999999999997 554443 2222
Q ss_pred HHHHHHH-------hCCHHHHH---HHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcH
Q 001486 364 NARYKEQ-------IGDTSAAR---AAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLP 433 (1070)
Q Consensus 364 ~a~~e~~-------~g~~~eA~---~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~ 433 (1070)
|...+.. ..+...++ .-|...+.. -|++. |+ ..|..-...+.+. ..
T Consensus 112 YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~r-yPnS~-----Ya---------~dA~~~i~~~~d~---------LA 167 (254)
T COG4105 112 YLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQR-YPNSR-----YA---------PDAKARIVKLNDA---------LA 167 (254)
T ss_pred HHHHHHHhccCCccccCHHHHHHHHHHHHHHHHH-CCCCc-----ch---------hhHHHHHHHHHHH---------HH
Confidence 2222211 11222222 223333311 12110 00 1111111111111 12
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHH---HHHHHHHHHHHcCCCcchhHHHHHHH
Q 001486 434 LLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKL---LLEELIKFTMVHGGRSHISIVDAVIS 495 (1070)
Q Consensus 434 ~l~i~~A~~~~~~~g~~e~Ar~iyekaL~~~P~~~~---lw~~y~~~e~~~g~~~~~~~ar~l~e 495 (1070)
..=+..|+++. +.|.+..|..-++..++.+|+... ....+.+.....|-.+.+..+..+++
T Consensus 168 ~~Em~IaryY~-kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 168 GHEMAIARYYL-KRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHHHHHHHHHH-HhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 22355566776 788888888888888888776443 23333333444565555544444443
No 254
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=95.83 E-value=0.018 Score=41.23 Aligned_cols=34 Identities=15% Similarity=0.246 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCc
Q 001486 433 PLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNC 467 (1070)
Q Consensus 433 ~~l~i~~A~~~~~~~g~~e~Ar~iyekaL~~~P~~ 467 (1070)
+.+|..+|.+++ ..|++++|++.|+++++++|++
T Consensus 1 a~~~~~lg~~~~-~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYY-QLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHCcCC
Confidence 467899999998 9999999999999999999974
No 255
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=95.74 E-value=0.086 Score=53.22 Aligned_cols=88 Identities=18% Similarity=0.086 Sum_probs=51.1
Q ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHHh---cCC-----CcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhC-------
Q 001486 23 KQGLEEFIAEGSLDFDEWTSLLSEIEN---SCP-----DDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLC------- 87 (1070)
Q Consensus 23 ~~~le~~l~~nP~s~~~W~~li~~~~~---~~~-----~~~~~a~~vyeraL~~~P~s~~lW~~ya~~e~~~~------- 87 (1070)
.+.++....+||.|.+.+++-.-.+.. ... .-+++|+.-|+.||.++|+..+....++..+...+
T Consensus 11 rk~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~ 90 (186)
T PF06552_consen 11 RKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTA 90 (186)
T ss_dssp HHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HH
T ss_pred HHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChH
Confidence 346788899999999888774433211 000 24567788888888888888776666666554332
Q ss_pred ----CHHHHHHHHHHHHHhcCCCHHHH
Q 001486 88 ----SIDKVVEVFERAVQSATYSVDVW 110 (1070)
Q Consensus 88 ----~~e~A~~lferAL~~~P~s~~lW 110 (1070)
.|++|...|++|+...|.+.-.+
T Consensus 91 ~A~~~F~kA~~~FqkAv~~~P~ne~Y~ 117 (186)
T PF06552_consen 91 EAEEYFEKATEYFQKAVDEDPNNELYR 117 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TT-HHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcHHHH
Confidence 25566666666666666554433
No 256
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.72 E-value=0.12 Score=50.47 Aligned_cols=73 Identities=12% Similarity=0.013 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHH
Q 001486 393 IEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKL 469 (1070)
Q Consensus 393 ~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~g~~e~Ar~iyekaL~~~P~~~~ 469 (1070)
...++.-|.-..+.|++++|++.|+.....++- .+....+-+.+|..++ ..+++++|+..|++-|+++|.++.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~---g~ya~qAqL~l~yayy-~~~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPF---GEYAEQAQLDLAYAYY-KQGDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC---CcccHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCCCC
Confidence 445666676667789999999999998888532 3345677788888887 999999999999999999998763
No 257
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.71 E-value=5.6 Score=46.08 Aligned_cols=187 Identities=14% Similarity=0.049 Sum_probs=115.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcc---CCC-------CHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhhhchH--HHHH
Q 001486 296 LSFAEKQGDFDWVVKLYERCLIP---CAD-------YPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPV--IHLF 363 (1070)
Q Consensus 296 i~~~~~~g~~~~a~~~yerAL~~---~p~-------~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~--i~~~ 363 (1070)
+.+..-.|++.+|+.....+..- .|. ...+.+.+|.+...-+-++.|..-|..|++.....+-. +-.+
T Consensus 330 v~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nln 409 (629)
T KOG2300|consen 330 VMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLN 409 (629)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 33444568877666555544432 232 34566777777777788999999999999874332221 2233
Q ss_pred HHHHHHHhCCHHHHHHHHHHHhhccCh-----h--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHH
Q 001486 364 NARYKEQIGDTSAARAAFPESYIDSDS-----R--FIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLY 436 (1070)
Q Consensus 364 ~a~~e~~~g~~~eA~~~~~~al~~~~p-----~--~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~ 436 (1070)
+|..+.+.++-+.-.++++..- -.+. . -..+++.++-+....+++.+|+....+.++......-.....-..
T Consensus 410 lAi~YL~~~~~ed~y~~ld~i~-p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~L 488 (629)
T KOG2300|consen 410 LAISYLRIGDAEDLYKALDLIG-PLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSL 488 (629)
T ss_pred HHHHHHHhccHHHHHHHHHhcC-CCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHH
Confidence 4556777777666555555432 1111 0 133566677777788999999999999999742111111122234
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHhh---CCC-cHHHHHH--HHHHHHHcCCC
Q 001486 437 VQFSRLTYTTTGSADNARDILIDGIKH---VPN-CKLLLEE--LIKFTMVHGGR 484 (1070)
Q Consensus 437 i~~A~~~~~~~g~~e~Ar~iyekaL~~---~P~-~~~lw~~--y~~~e~~~g~~ 484 (1070)
+-++.+.. ..|+..+++++..-++.. .|+ ..-+|.. |-++....|++
T Consensus 489 vLLs~v~l-slgn~~es~nmvrpamqlAkKi~Di~vqLws~si~~~L~~a~g~~ 541 (629)
T KOG2300|consen 489 VLLSHVFL-SLGNTVESRNMVRPAMQLAKKIPDIPVQLWSSSILTDLYQALGEK 541 (629)
T ss_pred HHHHHHHH-HhcchHHHHhccchHHHHHhcCCCchHHHHHHHHHHHHHHHhCcc
Confidence 55566665 899999999998888874 455 3457764 33555555653
No 258
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.45 E-value=0.73 Score=55.20 Aligned_cols=152 Identities=14% Similarity=0.080 Sum_probs=97.4
Q ss_pred cCCHHHHHHHHHHHhccCCCCHH------HH-HHHHHHHHh----hCChhHHHHHHHHHHHHHhhhchHHHHHHHHHHHH
Q 001486 302 QGDFDWVVKLYERCLIPCADYPE------FW-MRYVDFMES----KGGREIASYALDRATQIFLKRLPVIHLFNARYKEQ 370 (1070)
Q Consensus 302 ~g~~~~a~~~yerAL~~~p~~~~------lW-~~ya~~l~~----~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~ 370 (1070)
.||.+.....+.+|.....-... +| +.+...... ....+.|..++++.... .|+.....+..|+++..
T Consensus 201 ~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~-yP~s~lfl~~~gR~~~~ 279 (468)
T PF10300_consen 201 SGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR-YPNSALFLFFEGRLERL 279 (468)
T ss_pred CCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHH
Confidence 58999999999998874322211 12 222221221 23467899999998887 45555555567899999
Q ss_pred hCCHHHHHHHHHHHhhccChhh----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHH-HHHHHHh
Q 001486 371 IGDTSAARAAFPESYIDSDSRF----IEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQ-FSRLTYT 445 (1070)
Q Consensus 371 ~g~~~eA~~~~~~al~~~~p~~----~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~-~A~~~~~ 445 (1070)
.|++++|.+.|.+++. ..... .-.+..++-++....++++|...|.+.++. .....-+|.. .|-++.
T Consensus 280 ~g~~~~Ai~~~~~a~~-~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~------s~WSka~Y~Y~~a~c~~- 351 (468)
T PF10300_consen 280 KGNLEEAIESFERAIE-SQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE------SKWSKAFYAYLAAACLL- 351 (468)
T ss_pred hcCHHHHHHHHHHhcc-chhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc------cccHHHHHHHHHHHHHH-
Confidence 9999999999999872 21111 112334455556678999999999999886 3333344433 344444
Q ss_pred hcCCH-------HHHHHHHHHHHh
Q 001486 446 TTGSA-------DNARDILIDGIK 462 (1070)
Q Consensus 446 ~~g~~-------e~Ar~iyekaL~ 462 (1070)
..++. ++|.++|+++-.
T Consensus 352 ~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 352 MLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred hhccchhhhhhHHHHHHHHHHHHH
Confidence 78888 666666665543
No 259
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=95.45 E-value=0.1 Score=54.56 Aligned_cols=82 Identities=11% Similarity=0.021 Sum_probs=38.3
Q ss_pred hhHHHHHHHHHHHHHhhhchHHHHHHHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001486 339 REIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKE 418 (1070)
Q Consensus 339 ~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~eA~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~vyek 418 (1070)
++.|+..|.|||.+ .|..+..|-.-|....+..+++.+..-..+++ .+.|+.++..+.++.......+++.|++++.+
T Consensus 26 y~~ai~~y~raI~~-nP~~~~Y~tnralchlk~~~~~~v~~dcrral-ql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqr 103 (284)
T KOG4642|consen 26 YDDAIDCYSRAICI-NPTVASYYTNRALCHLKLKHWEPVEEDCRRAL-QLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQR 103 (284)
T ss_pred hchHHHHHHHHHhc-CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHH-hcChHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 44455555555544 33333334444444444445555444444444 44444444444444444444445555555555
Q ss_pred HHHH
Q 001486 419 ALET 422 (1070)
Q Consensus 419 al~~ 422 (1070)
|.++
T Consensus 104 a~sl 107 (284)
T KOG4642|consen 104 AYSL 107 (284)
T ss_pred HHHH
Confidence 5444
No 260
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.40 E-value=1.3 Score=48.41 Aligned_cols=146 Identities=12% Similarity=0.029 Sum_probs=92.7
Q ss_pred HHHHHhhCChhHHHHHHHHHHHHHhhhchHHHHHHHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCH
Q 001486 330 VDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNF 409 (1070)
Q Consensus 330 a~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~eA~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~ 409 (1070)
++-+...|++.+|..+|+.++.. .+.+..+.+.+++.+...|++++|..+|...-.+...+-.......+.+..+..+.
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~-~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQA-APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHh-CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 33455667788888888888876 55556777788888888888888888887642122111111122244455555444
Q ss_pred HHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCC--cHHHHHHHHHHHHHcCCC
Q 001486 410 VAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPN--CKLLLEELIKFTMVHGGR 484 (1070)
Q Consensus 410 ~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~g~~e~Ar~iyekaL~~~P~--~~~lw~~y~~~e~~~g~~ 484 (1070)
.+...+-.+ +.. +|.+..+-+.+|..+. ..|+.++|.+.+-..|+++-. +...-..++++..-.|..
T Consensus 220 ~~~~~l~~~-~aa------dPdd~~aa~~lA~~~~-~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~ 288 (304)
T COG3118 220 PEIQDLQRR-LAA------DPDDVEAALALADQLH-LVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPA 288 (304)
T ss_pred CCHHHHHHH-HHh------CCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCC
Confidence 444433333 333 5888888999999887 889999998888777776543 334445566665555533
No 261
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.26 E-value=9.4 Score=46.00 Aligned_cols=25 Identities=20% Similarity=0.069 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Q 001486 291 NWHDYLSFAEKQGDFDWVVKLYERC 315 (1070)
Q Consensus 291 ~W~~yi~~~~~~g~~~~a~~~yerA 315 (1070)
+.-.+++.+.+.|--++|...|-|.
T Consensus 854 llp~~a~mf~svGMC~qAV~a~Lr~ 878 (1189)
T KOG2041|consen 854 LLPVMADMFTSVGMCDQAVEAYLRR 878 (1189)
T ss_pred hHHHHHHHHHhhchHHHHHHHHHhc
Confidence 4444555555666666666666554
No 262
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=95.26 E-value=0.038 Score=39.71 Aligned_cols=34 Identities=12% Similarity=0.230 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCc
Q 001486 433 PLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNC 467 (1070)
Q Consensus 433 ~~l~i~~A~~~~~~~g~~e~Ar~iyekaL~~~P~~ 467 (1070)
+.+|...|.++. ..|++++|...|+++|+.+|++
T Consensus 1 a~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYF-QLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHH-HhCCchHHHHHHHHHHHHCcCC
Confidence 468999999998 9999999999999999999974
No 263
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.20 E-value=0.23 Score=54.28 Aligned_cols=156 Identities=12% Similarity=-0.006 Sum_probs=77.2
Q ss_pred cCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhhhchH---HHHHHHHHHHHhCCHHHHH
Q 001486 302 QGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPV---IHLFNARYKEQIGDTSAAR 378 (1070)
Q Consensus 302 ~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~---i~~~~a~~e~~~g~~~eA~ 378 (1070)
.|+.-+|....++.|...|.+--.|..--..+.-.|+.+..+..++|.+-...++.|. +.-.|+.-++..|-+++|.
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAE 195 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAE 195 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHH
Confidence 4555566666666666666665555544444444555555555665555443444442 2223344455666666666
Q ss_pred HHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHH
Q 001486 379 AAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILI 458 (1070)
Q Consensus 379 ~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~g~~e~Ar~iye 458 (1070)
+.-++++ .+++...-+....+.+....|.++++.+...+.-+.... ......+-|-.+|.++. +.+.++.|..||.
T Consensus 196 k~A~ral-qiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~--s~mlasHNyWH~Al~~i-E~aeye~aleIyD 271 (491)
T KOG2610|consen 196 KQADRAL-QINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQ--SWMLASHNYWHTALFHI-EGAEYEKALEIYD 271 (491)
T ss_pred HHHHhhc-cCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhh--hhHHHhhhhHHHHHhhh-cccchhHHHHHHH
Confidence 6666666 454433222223333444445555555544433222110 00111223444455554 4566666666666
Q ss_pred HHH
Q 001486 459 DGI 461 (1070)
Q Consensus 459 kaL 461 (1070)
+-+
T Consensus 272 ~ei 274 (491)
T KOG2610|consen 272 REI 274 (491)
T ss_pred HHH
Confidence 544
No 264
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.98 E-value=0.15 Score=58.27 Aligned_cols=123 Identities=13% Similarity=0.072 Sum_probs=92.6
Q ss_pred hchHHHHHHHHHHHHhCCHHHHHHHHHHHhhccChh--------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhc
Q 001486 356 RLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSR--------FIEKVTFKANMERRLGNFVAACDTYKEALETAAEQR 427 (1070)
Q Consensus 356 ~~p~i~~~~a~~e~~~g~~~eA~~~~~~al~~~~p~--------~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~ 427 (1070)
+.+...+.-+.+|...|++.+|.+++...--+..++ ..-.|.+++-+..++|.+..+..+|.+|+..+...-
T Consensus 238 ~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL 317 (696)
T KOG2471|consen 238 DSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQL 317 (696)
T ss_pred CCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHH
Confidence 445667777889999999999999877642122222 223477778788888999999999999997332211
Q ss_pred c------------CCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 001486 428 K------------FHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLLLEELIKFTM 479 (1070)
Q Consensus 428 ~------------~~~~~~l~i~~A~~~~~~~g~~e~Ar~iyekaL~~~P~~~~lw~~y~~~e~ 479 (1070)
. ......+..+.|..+. ..|+.-.|+++|.++++.+-.++.+|+.+++.=+
T Consensus 318 ~~g~~~~~~~tls~nks~eilYNcG~~~L-h~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 318 RNGLKPAKTFTLSQNKSMEILYNCGLLYL-HSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCI 380 (696)
T ss_pred hccCCCCcceehhcccchhhHHhhhHHHH-hcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 0 1123467788888887 9999999999999999999999999999987644
No 265
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=94.92 E-value=14 Score=46.05 Aligned_cols=156 Identities=17% Similarity=0.153 Sum_probs=97.4
Q ss_pred HHHhCC---HHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHH
Q 001486 368 KEQIGD---TSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTY 444 (1070)
Q Consensus 368 e~~~g~---~~eA~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~ 444 (1070)
.++.++ +-+|+-+++.++ ...+.+...-+.++.+|.-+|-+..|.++|+-. +. +. --.+.--|+.+-.++
T Consensus 446 ~rktnd~~~l~eaI~LLE~gl-t~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tL-dI---K~-IQ~DTlgh~~~~~~~- 518 (932)
T KOG2053|consen 446 WRKTNDLTDLFEAITLLENGL-TKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTL-DI---KN-IQTDTLGHLIFRRAE- 518 (932)
T ss_pred HHhcCcHHHHHHHHHHHHHHh-hcCCccHHHHHHHHHHHHHhcCChhHHHHHHhc-ch---HH-hhhccchHHHHHHHH-
Confidence 344444 447888888887 556666665566677777789999999999753 22 00 112233344444443
Q ss_pred hhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCCcchhHHHHHHHHHhccCCcccccCChhhHHHHHHHHHHHH
Q 001486 445 TTTGSADNARDILIDGIKHVPNCKLLLEELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFL 524 (1070)
Q Consensus 445 ~~~g~~e~Ar~iyekaL~~~P~~~~lw~~y~~~e~~~g~~~~~~~ar~l~ekAl~~~~~~s~~l~~~~~~~l~~~~~~~e 524 (1070)
..|.+..|...|...++.+-++-.=--.|+....++|.+.++.+.+.. ++-+.. + . -.....+-..++.+.
T Consensus 519 -t~g~~~~~s~~~~~~lkfy~~~~kE~~eyI~~AYr~g~ySkI~em~~f-r~rL~~-S-----~-q~~a~~VE~~~l~ll 589 (932)
T KOG2053|consen 519 -TSGRSSFASNTFNEHLKFYDSSLKETPEYIALAYRRGAYSKIPEMLAF-RDRLMH-S-----L-QKWACRVENLQLSLL 589 (932)
T ss_pred -hcccchhHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCchhhhHHHHHH-HHHHHH-H-----H-HHHHHHHHHHHHHHH
Confidence 688999999999999998877654455677777788888776533322 222210 0 0 023345555666667
Q ss_pred HHhCCHHHHHHHHHH
Q 001486 525 DLCGTIHDIRNAWNQ 539 (1070)
Q Consensus 525 ~~~G~~~~a~~~~~r 539 (1070)
-.+++.+....+++-
T Consensus 590 ~~~~~~~q~~~~~~~ 604 (932)
T KOG2053|consen 590 CNADRGTQLLKLLES 604 (932)
T ss_pred HhCCcHHHHHHHHhc
Confidence 778888877766643
No 266
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=94.85 E-value=1.8 Score=49.89 Aligned_cols=158 Identities=13% Similarity=0.057 Sum_probs=100.8
Q ss_pred CHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhh----hc---------------------h
Q 001486 304 DFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLK----RL---------------------P 358 (1070)
Q Consensus 304 ~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~----~~---------------------p 358 (1070)
|.+..+.++ ..+|.+.+..+.++.++...|+.+.|.++++||+-++.. .. -
T Consensus 25 Dp~~l~~ll----~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR 100 (360)
T PF04910_consen 25 DPNALINLL----QKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENR 100 (360)
T ss_pred CHHHHHHHH----HHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccch
Confidence 555555443 456888888888888888888887777777777765321 10 0
Q ss_pred HHH---HHHHHHHHHhCCHHHHHHHHHHHhhccChh-hHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHhhccCCCcH
Q 001486 359 VIH---LFNARYKEQIGDTSAARAAFPESYIDSDSR-FIEKVTFKANME-RRLGNFVAACDTYKEALETAAEQRKFHTLP 433 (1070)
Q Consensus 359 ~i~---~~~a~~e~~~g~~~eA~~~~~~al~~~~p~-~~~~w~~~a~le-~~~g~~~~A~~vyekal~~~~~~~~~~~~~ 433 (1070)
.+| +.+...+.+.|-+..|.++.+-.+ .++|. ++-.-..+++++ .+.+.++-.+++++....... .......|
T Consensus 101 ~fflal~r~i~~L~~RG~~rTAlE~~KlLl-sLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~-~~~~~~lP 178 (360)
T PF04910_consen 101 QFFLALFRYIQSLGRRGCWRTALEWCKLLL-SLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCY-RNWLSLLP 178 (360)
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHHH-hcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhh-hhhhhhCc
Confidence 122 234456788999999999888777 56664 333333334432 355777777777776555210 00001244
Q ss_pred HHHHHHHHHHHhhcCCH---------------HHHHHHHHHHHhhCCCcH
Q 001486 434 LLYVQFSRLTYTTTGSA---------------DNARDILIDGIKHVPNCK 468 (1070)
Q Consensus 434 ~l~i~~A~~~~~~~g~~---------------e~Ar~iyekaL~~~P~~~ 468 (1070)
.+-...|.+++ ..++. +.|++.+.+|+..+|...
T Consensus 179 n~a~S~aLA~~-~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl 227 (360)
T PF04910_consen 179 NFAFSIALAYF-RLEKEESSQSSAQSGRSENSESADEALQKAILRFPWVL 227 (360)
T ss_pred cHHHHHHHHHH-HhcCccccccccccccccchhHHHHHHHHHHHHhHHHH
Confidence 56666666665 56666 899999999999999644
No 267
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.84 E-value=3.3 Score=42.60 Aligned_cols=113 Identities=15% Similarity=0.036 Sum_probs=79.6
Q ss_pred HHHHHHHHhccCCCCH---HHHHHHHHHHHhhCChhHHHHHHHHHHHHHhhhc--hHHHHHHHHHHHHhCCHHHHHHHHH
Q 001486 308 VVKLYERCLIPCADYP---EFWMRYVDFMESKGGREIASYALDRATQIFLKRL--PVIHLFNARYKEQIGDTSAARAAFP 382 (1070)
Q Consensus 308 a~~~yerAL~~~p~~~---~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~--p~i~~~~a~~e~~~g~~~eA~~~~~ 382 (1070)
.....++.+..++... -.-+.+|+.+.+.+++++|...++-++......+ +.+-+.++++....|.+|+|.+++.
T Consensus 71 ~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~ 150 (207)
T COG2976 71 SIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLD 150 (207)
T ss_pred hHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHh
Confidence 3334444444443332 2346678888889999999999998886421111 2456677888999999999999988
Q ss_pred HHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001486 383 ESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALET 422 (1070)
Q Consensus 383 ~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~ 422 (1070)
..-+ +.-...+-...++++...|+-++|++.|++|+..
T Consensus 151 t~~~--~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 151 TIKE--ESWAAIVAELRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred cccc--ccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence 6532 1112333456788999999999999999999997
No 268
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.72 E-value=1.6 Score=46.78 Aligned_cols=153 Identities=12% Similarity=0.022 Sum_probs=91.5
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHH-H
Q 001486 392 FIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKL-L 470 (1070)
Q Consensus 392 ~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~g~~e~Ar~iyekaL~~~P~~~~-l 470 (1070)
.+..|+.-+.-+...|++++|.+.|++....++ ..+...++.+.++...+ ..++++.|+...++-++.+|.++. -
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p---~s~~~~qa~l~l~yA~Y-k~~~y~~A~~~~drFi~lyP~~~n~d 108 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHP---FSPYSEQAQLDLAYAYY-KNGEYDLALAYIDRFIRLYPTHPNAD 108 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CCcccHHHHHHHHHHHH-hcccHHHHHHHHHHHHHhCCCCCChh
Confidence 345577777777777888888888888776632 23445677777777776 888888888888888888887653 2
Q ss_pred HHHHHHHHHHcC-------CCcchhHHHHHHHHHhccCCcccccCChhhHH-HHHH-------HHHHHHHHhCCHHHHHH
Q 001486 471 LEELIKFTMVHG-------GRSHISIVDAVISNALYSRPDVLKVFSLEDVE-DISS-------LYLQFLDLCGTIHDIRN 535 (1070)
Q Consensus 471 w~~y~~~e~~~g-------~~~~~~~ar~l~ekAl~~~~~~s~~l~~~~~~-~l~~-------~~~~~e~~~G~~~~a~~ 535 (1070)
|..|+..+...- |...++.+-.-|+..+.+.|+..-..+..... .+-. .-.+|-.+.|....|..
T Consensus 109 Y~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~n 188 (254)
T COG4105 109 YAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAIN 188 (254)
T ss_pred HHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHH
Confidence 444554444322 22223445556666666666321111111111 1111 12234456677777877
Q ss_pred HHHHHHHhCCCCc
Q 001486 536 AWNQHIKLFPHTV 548 (1070)
Q Consensus 536 ~~~ra~~~~p~~~ 548 (1070)
-++++++-.|+..
T Consensus 189 R~~~v~e~y~~t~ 201 (254)
T COG4105 189 RFEEVLENYPDTS 201 (254)
T ss_pred HHHHHHhcccccc
Confidence 7888888777643
No 269
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=94.50 E-value=36 Score=48.88 Aligned_cols=241 Identities=13% Similarity=0.144 Sum_probs=136.3
Q ss_pred CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh---cc--------CCCCHHHH--HHHHHHHHhhCChhHHHHHHHHH
Q 001486 283 PLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCL---IP--------CADYPEFW--MRYVDFMESKGGREIASYALDRA 349 (1070)
Q Consensus 283 ~~~p~~~~~W~~yi~~~~~~g~~~~a~~~yerAL---~~--------~p~~~~lW--~~ya~~l~~~g~~e~A~~il~rA 349 (1070)
|..-++...|..+..|-.. -|.-+..+|+--. .. -+.++.+| ..+|++..+.|-.+.+...+.+.
T Consensus 2685 P~~~Dd~~~Wsdl~~WRq~--~y~~I~~~~~~~~~~~~~~~ns~~~~~Gyhe~A~~in~fakvArkh~l~~vcl~~L~~i 2762 (3550)
T KOG0889|consen 2685 PNVWDDMNQWSDLITWRQH--AYSMINKAYLPLVPYKQNASNSNNLYRGYHELAWAINRFAKVARKHGLPDVCLNQLAKI 2762 (3550)
T ss_pred CCcchhHHHHHHHHHHHHH--HHHHHHHHhcccchhhhccCCcchHHHhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 3445677888888888532 2334444454422 11 13344555 45677888888888888888777
Q ss_pred HHHHhhhchHHHHHHHHH-------HHHhCCHHHHHHHHHHH-hhcc-ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001486 350 TQIFLKRLPVIHLFNARY-------KEQIGDTSAARAAFPES-YIDS-DSRFIEKVTFKANMERRLGNFVAACDTYKEAL 420 (1070)
Q Consensus 350 l~~~~~~~p~i~~~~a~~-------e~~~g~~~eA~~~~~~a-l~~~-~p~~~~~w~~~a~le~~~g~~~~A~~vyekal 420 (1070)
..+ |..+ +-.+.-++ +...+....+.++.+.. +..+ +.-....+...|.|..++|..++|-..|..|+
T Consensus 2763 ytl--p~ve-iqdaF~K~req~~c~l~~~~e~~~gLevi~sTNl~yF~~~q~aeff~lkG~f~~kL~~~eeAn~~fs~Av 2839 (3550)
T KOG0889|consen 2763 YTL--PNVE-IQDAFQKLREQAKCYLQNKNELKTGLEVIESTNLMYFSDRQKAEFFTLKGMFLEKLGKFEEANKAFSAAV 2839 (3550)
T ss_pred hcc--Ccch-HHHHHHHHHHHHHHHhcChHHHHHHHHHHhcccHHHHhhHHHHHHHHhhhHHHHHhcCcchhHHHHHHHH
Confidence 764 2221 11111111 11112223333333322 1111 11234567778889999999999999999999
Q ss_pred HHHHhhccCCCcHHHHHHHHHHHHhh----cCC---HHHHHHHHHHHHhhCCCcH-HHHHHHHHHHHHcCCCcchhHHHH
Q 001486 421 ETAAEQRKFHTLPLLYVQFSRLTYTT----TGS---ADNARDILIDGIKHVPNCK-LLLEELIKFTMVHGGRSHISIVDA 492 (1070)
Q Consensus 421 ~~~~~~~~~~~~~~l~i~~A~~~~~~----~g~---~e~Ar~iyekaL~~~P~~~-~lw~~y~~~e~~~g~~~~~~~ar~ 492 (1070)
.+. ....++|..||.+.... .++ -..|..+|=+|+..+-.+. .=++.-+-+++...+... .+-.
T Consensus 2840 Qi~------~~l~KaW~~Wg~y~~~~f~~e~~ni~~a~~avsCyLqA~~~~~~skaRk~iakvLwLls~dda~~--~l~~ 2911 (3550)
T KOG0889|consen 2840 QID------DGLGKAWAEWGKYLDNRFNKEPVNISFACNAVSCYLQAARLYNSSKARKLIAKVLWLLSFDDSLG--TLGD 2911 (3550)
T ss_pred HHH------hhhHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhccccc--hHHH
Confidence 983 55689999999976532 222 3456777878877654432 112222222222222221 1336
Q ss_pred HHHHHhccCCcccccCChhhHHHHHHHHHHHH---HHhCCHHHHHHHHHHHHHhCCCC
Q 001486 493 VISNALYSRPDVLKVFSLEDVEDISSLYLQFL---DLCGTIHDIRNAWNQHIKLFPHT 547 (1070)
Q Consensus 493 l~ekAl~~~~~~s~~l~~~~~~~l~~~~~~~e---~~~G~~~~a~~~~~ra~~~~p~~ 547 (1070)
+|++-+.. +| .-.|..|+--. ..++....+..++.+..+..|-.
T Consensus 2912 ~~~k~l~~-------ip----~~~wl~~IPQLl~sLs~~e~~~~~~iL~kia~~yPQa 2958 (3550)
T KOG0889|consen 2912 VFDKFLGE-------IP----VWNWLYFIPQLLTSLSKKEAKLVRLILIKIAKSYPQA 2958 (3550)
T ss_pred HHHHhhcc-------CC----chhhhhhhHHHHhhccccchhHHHHHHHHHHHhchHH
Confidence 77777642 22 23455665444 35677778888888888888774
No 270
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.45 E-value=0.87 Score=54.55 Aligned_cols=122 Identities=17% Similarity=0.028 Sum_probs=88.4
Q ss_pred cCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHH--hhhch-HHHHHHHHHHHHhCCHHHHH
Q 001486 302 QGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIF--LKRLP-VIHLFNARYKEQIGDTSAAR 378 (1070)
Q Consensus 302 ~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~--~~~~p-~i~~~~a~~e~~~g~~~eA~ 378 (1070)
..+.+.+..+.++.+...|+..-+.+..|+++...|++++|+..|++|+..- .+-.. ..++..+.......+|++|.
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 3467889999999999999987777778999999999999999999998631 11111 24445566677899999999
Q ss_pred HHHHHHhhccChhhHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHHH
Q 001486 379 AAFPESYIDSDSRFIEKVTFKANMERRLGNF-------VAACDTYKEALETA 423 (1070)
Q Consensus 379 ~~~~~al~~~~p~~~~~w~~~a~le~~~g~~-------~~A~~vyekal~~~ 423 (1070)
..|.+..++..-...-..+..|.++...|+. ++|..+|.++-...
T Consensus 326 ~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 326 EYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence 9999988433222222233345567777887 77777777776664
No 271
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.16 E-value=3 Score=45.98 Aligned_cols=51 Identities=10% Similarity=0.016 Sum_probs=23.3
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 001486 403 ERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDG 460 (1070)
Q Consensus 403 e~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~g~~e~Ar~iyeka 460 (1070)
+.+.|-++.|.+.-++|+++ ++.+.-.....|.+++ ..+++.++.++..+-
T Consensus 185 L~E~g~y~dAEk~A~ralqi------N~~D~Wa~Ha~aHVle-m~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 185 LEECGIYDDAEKQADRALQI------NRFDCWASHAKAHVLE-MNGRHKEGKEFMYKT 235 (491)
T ss_pred HHHhccchhHHHHHHhhccC------CCcchHHHHHHHHHHH-hcchhhhHHHHHHhc
Confidence 34445555555555555554 3333333333444444 445555555544433
No 272
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.95 E-value=0.13 Score=36.62 Aligned_cols=32 Identities=19% Similarity=0.339 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhcCC
Q 001486 74 GYWRKYADHKARLCSIDKVVEVFERAVQSATY 105 (1070)
Q Consensus 74 ~lW~~ya~~e~~~~~~e~A~~lferAL~~~P~ 105 (1070)
+.|..++..+...+++++|+..|++|+..+|.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 45666666666666666666666666666664
No 273
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.88 E-value=2.1 Score=44.02 Aligned_cols=98 Identities=15% Similarity=0.142 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC---CHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhhhch-----H
Q 001486 288 QLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCAD---YPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLP-----V 359 (1070)
Q Consensus 288 ~~~~W~~yi~~~~~~g~~~~a~~~yerAL~~~p~---~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p-----~ 359 (1070)
-...|..+++++.+.|+.+.|...|.++...|.. ..++|+..+.+....+++..+...+.+|-.......+ .
T Consensus 35 ir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nr 114 (177)
T PF10602_consen 35 IRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNR 114 (177)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 3467889999999999999999999999887643 3577888888888889999988888888876433111 2
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHh
Q 001486 360 IHLFNARYKEQIGDTSAARAAFPESY 385 (1070)
Q Consensus 360 i~~~~a~~e~~~g~~~eA~~~~~~al 385 (1070)
+....|......++|.+|-.+|-.+.
T Consensus 115 lk~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 115 LKVYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHccC
Confidence 33344455566777777777776654
No 274
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=93.87 E-value=23 Score=44.16 Aligned_cols=115 Identities=12% Similarity=0.141 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHCCCCH----HHHHHHHHHHH-HhCCHHHHHHHHHHHHHhcCC--CHHHH----HHHHHHHHhhCCChh
Q 001486 57 MIGLVYDSFLAEFPLCY----GYWRKYADHKA-RLCSIDKVVEVFERAVQSATY--SVDVW----FHYCSLSMSTFEDPN 125 (1070)
Q Consensus 57 ~a~~vyeraL~~~P~s~----~lW~~ya~~e~-~~~~~e~A~~lferAL~~~P~--s~~lW----~~y~~~~~~~~~~~~ 125 (1070)
.+.+.++-+++.++.++ .+.+.|+.++. ...+++.|+..++||+..+.. ..++- ..+++++.+. +..
T Consensus 39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~--~~~ 116 (608)
T PF10345_consen 39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKT--NPK 116 (608)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhc--CHH
Confidence 35667777776665554 57788888776 447899999999999988743 22221 1223333333 444
Q ss_pred HHHHHHHHHHHHcCCCCCchHHHHHHHHHHHH-----cccHHHHHHHHHHHHccC
Q 001486 126 DVRRLFKRALSFVGKDYLCHTMWDKYIEFEIS-----QQRWSSLAQIFVQTLRFP 175 (1070)
Q Consensus 126 ~ar~vferAL~~~p~~~~s~~lW~~yi~fe~~-----~~~~~~a~~iy~raL~~p 175 (1070)
.|.+.++++|...... ....|...++|.+- .++...|...+++....+
T Consensus 117 ~a~~~l~~~I~~~~~~--~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a 169 (608)
T PF10345_consen 117 AALKNLDKAIEDSETY--GHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLA 169 (608)
T ss_pred HHHHHHHHHHHHHhcc--CchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHh
Confidence 4999999999877542 34677777777632 256777888888776654
No 275
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=93.81 E-value=0.099 Score=37.43 Aligned_cols=32 Identities=13% Similarity=0.273 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCC
Q 001486 434 LLYVQFSRLTYTTTGSADNARDILIDGIKHVPN 466 (1070)
Q Consensus 434 ~l~i~~A~~~~~~~g~~e~Ar~iyekaL~~~P~ 466 (1070)
++|+.+|.++. ..|++++|.+.|+++++..|+
T Consensus 2 ~~~~~lg~~y~-~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYE-QLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHH-HTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCC
Confidence 57899999998 999999999999999998885
No 276
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=93.81 E-value=0.083 Score=60.74 Aligned_cols=98 Identities=16% Similarity=0.021 Sum_probs=67.7
Q ss_pred hCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhcCCH
Q 001486 371 IGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSA 450 (1070)
Q Consensus 371 ~g~~~eA~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~g~~ 450 (1070)
-+.|+.|..+|.+|| +++|+++.+|-..+....+.+++..|..=+.+||+. .|...+.|+.-|.... ..+.+
T Consensus 17 ~~~fd~avdlysKaI-~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~------dP~~~K~Y~rrg~a~m-~l~~~ 88 (476)
T KOG0376|consen 17 DKVFDVAVDLYSKAI-ELDPNCAIYFANRALAHLKVESFGGALHDALKAIEL------DPTYIKAYVRRGTAVM-ALGEF 88 (476)
T ss_pred cchHHHHHHHHHHHH-hcCCcceeeechhhhhheeechhhhHHHHHHhhhhc------CchhhheeeeccHHHH-hHHHH
Confidence 456677777777777 677766666666666666677777777777777776 5666777777666655 67777
Q ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHH
Q 001486 451 DNARDILIDGIKHVPNCKLLLEELIK 476 (1070)
Q Consensus 451 e~Ar~iyekaL~~~P~~~~lw~~y~~ 476 (1070)
.+|+..|+++.+..|+.+.+-..+.+
T Consensus 89 ~~A~~~l~~~~~l~Pnd~~~~r~~~E 114 (476)
T KOG0376|consen 89 KKALLDLEKVKKLAPNDPDATRKIDE 114 (476)
T ss_pred HHHHHHHHHhhhcCcCcHHHHHHHHH
Confidence 77777777777777777665444443
No 277
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.75 E-value=1.8 Score=44.35 Aligned_cols=97 Identities=11% Similarity=0.039 Sum_probs=67.7
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHhhccChhhHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHH
Q 001486 363 FNARYKEQIGDTSAARAAFPESYIDSDSRFIE--KVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFS 440 (1070)
Q Consensus 363 ~~a~~e~~~g~~~eA~~~~~~al~~~~p~~~~--~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A 440 (1070)
..|.-+...+++++|..-+..++..-....+. +-.+++.+....|.+|+|.++++..-+ ....+.+-...|
T Consensus 94 ~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~-------~~w~~~~~elrG 166 (207)
T COG2976 94 ELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE-------ESWAAIVAELRG 166 (207)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc-------ccHHHHHHHHhh
Confidence 34555677899999999999887322112222 234566677777887777777654332 233445566778
Q ss_pred HHHHhhcCCHHHHHHHHHHHHhhCCCc
Q 001486 441 RLTYTTTGSADNARDILIDGIKHVPNC 467 (1070)
Q Consensus 441 ~~~~~~~g~~e~Ar~iyekaL~~~P~~ 467 (1070)
.++. ..|+.++||+.|++|+...+..
T Consensus 167 Dill-~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 167 DILL-AKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred hHHH-HcCchHHHHHHHHHHHHccCCh
Confidence 8888 9999999999999999987543
No 278
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=93.61 E-value=10 Score=45.00 Aligned_cols=106 Identities=15% Similarity=0.129 Sum_probs=82.6
Q ss_pred HHHHH-HhCCHHHHHHHHHHHhhccChhh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHH
Q 001486 365 ARYKE-QIGDTSAARAAFPESYIDSDSRF-IEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRL 442 (1070)
Q Consensus 365 a~~e~-~~g~~~eA~~~~~~al~~~~p~~-~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~ 442 (1070)
|-+++ ..|+..-|.+++.+|+ ...|.- .--...++++....|-...|-..+..+|.+ ....+..++..|++
T Consensus 613 aglywr~~gn~~~a~~cl~~a~-~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~------~~sepl~~~~~g~~ 685 (886)
T KOG4507|consen 613 AGLYWRAVGNSTFAIACLQRAL-NLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAI------NSSEPLTFLSLGNA 685 (886)
T ss_pred ccceeeecCCcHHHHHHHHHHh-ccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhh------cccCchHHHhcchh
Confidence 33444 4899999999999998 343421 122567788888888888999999999998 45567788888998
Q ss_pred HHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 001486 443 TYTTTGSADNARDILIDGIKHVPNCKLLLEELIKFT 478 (1070)
Q Consensus 443 ~~~~~g~~e~Ar~iyekaL~~~P~~~~lw~~y~~~e 478 (1070)
+. ...+++.|.+.|+.|+++.|++..+-..+..+.
T Consensus 686 ~l-~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~ 720 (886)
T KOG4507|consen 686 YL-ALKNISGALEAFRQALKLTTKCPECENSLKLIR 720 (886)
T ss_pred HH-HHhhhHHHHHHHHHHHhcCCCChhhHHHHHHHH
Confidence 87 899999999999999999999987666554443
No 279
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.45 E-value=15 Score=40.76 Aligned_cols=231 Identities=14% Similarity=-0.014 Sum_probs=132.9
Q ss_pred HcCCHHHHHHHHHHHhccC----CCC----HHHHHHHHHHHHhhC-ChhHHHHHHHHHHHHHhh------hch-------
Q 001486 301 KQGDFDWVVKLYERCLIPC----ADY----PEFWMRYVDFMESKG-GREIASYALDRATQIFLK------RLP------- 358 (1070)
Q Consensus 301 ~~g~~~~a~~~yerAL~~~----p~~----~~lW~~ya~~l~~~g-~~e~A~~il~rAl~~~~~------~~p------- 358 (1070)
+.|+++.|...|.||-... |.. ..+.+++|+-+...+ ++++|...+++|.+++.. ..+
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~ 84 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRL 84 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHH
Confidence 4789999999999987532 222 356788888888888 999999999999998522 111
Q ss_pred HHHHHHHHHHHHhCCH---HHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHH
Q 001486 359 VIHLFNARYKEQIGDT---SAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLL 435 (1070)
Q Consensus 359 ~i~~~~a~~e~~~g~~---~eA~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l 435 (1070)
.+...++..+...+.. ++|..+++-+-.+ .++.+.++.....+..+.++.+.+.+++.+++..+.- .......
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~---~e~~~~~ 160 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDH---SESNFDS 160 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhccc---ccchHHH
Confidence 2444455555555544 4555555554322 2445556655566666688999999999999997410 1123344
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHhh--CCCcHHHHHHHH---HHHHHcC-----CCcchhHHHHHHHHHhccCCccc
Q 001486 436 YVQFSRLTYTTTGSADNARDILIDGIKH--VPNCKLLLEELI---KFTMVHG-----GRSHISIVDAVISNALYSRPDVL 505 (1070)
Q Consensus 436 ~i~~A~~~~~~~g~~e~Ar~iyekaL~~--~P~~~~lw~~y~---~~e~~~g-----~~~~~~~ar~l~ekAl~~~~~~s 505 (1070)
.+.....+. ..+...|..++.+.|.. .|.... |..-+ .+....+ +.++++.+..+++...... .
T Consensus 161 ~l~~i~~l~--~~~~~~a~~~ld~~l~~r~~~~~~~-~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~---~ 234 (278)
T PF08631_consen 161 ILHHIKQLA--EKSPELAAFCLDYLLLNRFKSSEDQ-WLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSL---G 234 (278)
T ss_pred HHHHHHHHH--hhCcHHHHHHHHHHHHHHhCCChhH-HHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHh---c
Confidence 444444443 33445666666666653 222222 43222 1112112 1222444555555332211 1
Q ss_pred ccCChhhHH----HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 001486 506 KVFSLEDVE----DISSLYLQFLDLCGTIHDIRNAWNQHIK 542 (1070)
Q Consensus 506 ~~l~~~~~~----~l~~~~~~~e~~~G~~~~a~~~~~ra~~ 542 (1070)
..++.+... -||.. +.-..+.+++.+|...|+-+++
T Consensus 235 ~~ls~~~~~a~~~LLW~~-~~~~~~~k~y~~A~~w~~~al~ 274 (278)
T PF08631_consen 235 KQLSAEAASAIHTLLWNK-GKKHYKAKNYDEAIEWYELALH 274 (278)
T ss_pred CCCCHHHHHHHHHHHHHH-HHHHHhhcCHHHHHHHHHHHHH
Confidence 234433322 34544 3444567899999999987664
No 280
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=93.44 E-value=4 Score=48.56 Aligned_cols=50 Identities=6% Similarity=0.069 Sum_probs=37.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 001486 401 NMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDG 460 (1070)
Q Consensus 401 ~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~g~~e~Ar~iyeka 460 (1070)
++....++.++|.++-++-= ...+.+|+-+|+++. +..++++|-+.|.+|
T Consensus 781 qlHve~~~W~eAFalAe~hP---------e~~~dVy~pyaqwLA-E~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 781 QLHVETQRWDEAFALAEKHP---------EFKDDVYMPYAQWLA-ENDRFEEAQKAFHKA 830 (1081)
T ss_pred hheeecccchHhHhhhhhCc---------cccccccchHHHHhh-hhhhHHHHHHHHHHh
Confidence 34445577788777665432 234678999999998 999999999999887
No 281
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.41 E-value=6.2 Score=42.36 Aligned_cols=153 Identities=10% Similarity=-0.056 Sum_probs=97.6
Q ss_pred CChHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhCChh-HHHHHHHHHHHHHhhhchHHH
Q 001486 284 LDDIQLKNWHDYLSFAEKQG-DFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGRE-IASYALDRATQIFLKRLPVIH 361 (1070)
Q Consensus 284 ~~p~~~~~W~~yi~~~~~~g-~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e-~A~~il~rAl~~~~~~~p~i~ 361 (1070)
++|.+..+|.-.-..+...+ +..+-.+..++.+..+|++..+|.---.+.+..|+.. .-.++.++++..-.+ +-.+|
T Consensus 72 lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaK-NYHaW 150 (318)
T KOG0530|consen 72 LNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAK-NYHAW 150 (318)
T ss_pred hCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhcccc-chhhh
Confidence 68889999988777766554 5677778888889999999999999888888888765 556777777765222 22355
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHH-HcCC-----HHHHHHHHHHHHHHHHhhccCCCcHHH
Q 001486 362 LFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMER-RLGN-----FVAACDTYKEALETAAEQRKFHTLPLL 435 (1070)
Q Consensus 362 ~~~a~~e~~~g~~~eA~~~~~~al~~~~p~~~~~w~~~a~le~-~~g~-----~~~A~~vyekal~~~~~~~~~~~~~~l 435 (1070)
...-.....-+.++.-+......++ .+-.+-.+|....-+.. ..|- ++.-...-.+.|.. .|.+...
T Consensus 151 shRqW~~r~F~~~~~EL~y~~~Lle-~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~------vP~NeSa 223 (318)
T KOG0530|consen 151 SHRQWVLRFFKDYEDELAYADELLE-EDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILL------VPNNESA 223 (318)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHH-HhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHh------CCCCccH
Confidence 5544455555667776666666652 22222234543211110 1122 23334455666666 5777788
Q ss_pred HHHHHHHHH
Q 001486 436 YVQFSRLTY 444 (1070)
Q Consensus 436 ~i~~A~~~~ 444 (1070)
|..+.-++.
T Consensus 224 WnYL~G~l~ 232 (318)
T KOG0530|consen 224 WNYLKGLLE 232 (318)
T ss_pred HHHHHHHHH
Confidence 888877765
No 282
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.35 E-value=2 Score=46.92 Aligned_cols=120 Identities=16% Similarity=0.070 Sum_probs=85.7
Q ss_pred HcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhhhchHHHHHHHHHHHHhCCHHHHHHH
Q 001486 301 KQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAA 380 (1070)
Q Consensus 301 ~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~eA~~~ 380 (1070)
..|++..+..+|..++...|.+.++-+.|+.+|...|+.+.|..+|...-.-...+.......+..+..+.....+...+
T Consensus 146 ~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~l 225 (304)
T COG3118 146 EAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQDL 225 (304)
T ss_pred hccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 46889999999999999999999999999999999999999999986522110001111111234555555444444433
Q ss_pred HHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001486 381 FPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALET 422 (1070)
Q Consensus 381 ~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~ 422 (1070)
-.++ ..+|++..+-+.++..+.-.|+.+.|.+.+-..++.
T Consensus 226 ~~~~--aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 226 QRRL--AADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred HHHH--HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3333 457888999999999999999999987766555554
No 283
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=93.25 E-value=0.14 Score=36.24 Aligned_cols=32 Identities=25% Similarity=0.363 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCc
Q 001486 435 LYVQFSRLTYTTTGSADNARDILIDGIKHVPNC 467 (1070)
Q Consensus 435 l~i~~A~~~~~~~g~~e~Ar~iyekaL~~~P~~ 467 (1070)
+++.+|.++. ..|++++|+++|++.++.+|++
T Consensus 2 a~~~~a~~~~-~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYY-KLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHH-HHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHH-HccCHHHHHHHHHHHHHHCcCC
Confidence 5677888888 8999999999999999999975
No 284
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.02 E-value=0.075 Score=58.44 Aligned_cols=50 Identities=16% Similarity=0.210 Sum_probs=22.6
Q ss_pred CCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHH
Q 001486 303 GDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQI 352 (1070)
Q Consensus 303 g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~ 352 (1070)
|.++.++.+|.+|+..+|....++..-+.++.+..+...|+.-|+.|+.+
T Consensus 128 G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei 177 (377)
T KOG1308|consen 128 GEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI 177 (377)
T ss_pred cchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhcc
Confidence 44444444444444444444444444444444444444444444444443
No 285
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.87 E-value=23 Score=41.28 Aligned_cols=192 Identities=14% Similarity=0.081 Sum_probs=113.5
Q ss_pred HhhCChhHHHHHHHHHHHHHhh---------hchHHHHHHHHHHHHhCCHHHHHHHHHHHhhccChhhHHHH--HHHHHH
Q 001486 334 ESKGGREIASYALDRATQIFLK---------RLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKV--TFKANM 402 (1070)
Q Consensus 334 ~~~g~~e~A~~il~rAl~~~~~---------~~p~i~~~~a~~e~~~g~~~eA~~~~~~al~~~~p~~~~~w--~~~a~l 402 (1070)
.-.|++.+|+.-+..+...+.+ ..+.+++..|.+....+-++.|..-|..|++......+.++ .++|..
T Consensus 334 lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~ 413 (629)
T KOG2300|consen 334 LVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAIS 413 (629)
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHH
Confidence 3457787777766666654321 23457888888888888999999999999865544444333 245556
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHhhccCCC-----cHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHH---HH---
Q 001486 403 ERRLGNFVAACDTYKEALETAAEQRKFHT-----LPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKL---LL--- 471 (1070)
Q Consensus 403 e~~~g~~~~A~~vyekal~~~~~~~~~~~-----~~~l~i~~A~~~~~~~g~~e~Ar~iyekaL~~~P~~~~---lw--- 471 (1070)
|.+.|+.+ .|.++++.+.+....+. ...+++-+|.+.+ ..+++.+|+....++|+.. +..+ +-
T Consensus 414 YL~~~~~e----d~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf-~qn~lnEaK~~l~e~Lkma-naed~~rL~a~~ 487 (629)
T KOG2300|consen 414 YLRIGDAE----DLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAF-KQNDLNEAKRFLRETLKMA-NAEDLNRLTACS 487 (629)
T ss_pred HHHhccHH----HHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHhhc-chhhHHHHHHHH
Confidence 66666533 34456666654432222 2346777888887 9999999999999999865 2221 11
Q ss_pred -HHHHHHHHHcCCCcchhHHHHHHHHHhccCCcccccCChhhHHHHHHHH--HHHHHHhCC--HHHHHHHHHH
Q 001486 472 -EELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLY--LQFLDLCGT--IHDIRNAWNQ 539 (1070)
Q Consensus 472 -~~y~~~e~~~g~~~~~~~ar~l~ekAl~~~~~~s~~l~~~~~~~l~~~~--~~~e~~~G~--~~~a~~~~~r 539 (1070)
..+..+....|+..+. +..+.-++.-. +++ ++.+..||-.- -++....|+ .++..+++..
T Consensus 488 LvLLs~v~lslgn~~es---~nmvrpamqlA----kKi-~Di~vqLws~si~~~L~~a~g~~~~~~e~e~~~~ 552 (629)
T KOG2300|consen 488 LVLLSHVFLSLGNTVES---RNMVRPAMQLA----KKI-PDIPVQLWSSSILTDLYQALGEKGNEMENEAFRK 552 (629)
T ss_pred HHHHHHHHHHhcchHHH---HhccchHHHHH----hcC-CCchHHHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 1223444455665443 34443343211 112 35566677543 344455666 5555555544
No 286
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.81 E-value=0.091 Score=57.82 Aligned_cols=85 Identities=18% Similarity=0.141 Sum_probs=44.5
Q ss_pred hCChhHHHHHHHHHHHHHhhhchHHHHHHHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHH
Q 001486 336 KGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDT 415 (1070)
Q Consensus 336 ~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~eA~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~v 415 (1070)
.|.+++|++.|.+||.+ .+....++-..+....+.++...|++-+..++ +++++...-|...+..++.+|++++|...
T Consensus 127 ~G~~~~ai~~~t~ai~l-np~~a~l~~kr~sv~lkl~kp~~airD~d~A~-ein~Dsa~~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIEL-NPPLAILYAKRASVFLKLKKPNAAIRDCDFAI-EINPDSAKGYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred Ccchhhhhccccccccc-CCchhhhcccccceeeeccCCchhhhhhhhhh-ccCcccccccchhhHHHHHhhchHHHHHH
Confidence 34455555666555554 33333334334444455555555555555555 45555554444455555555555555555
Q ss_pred HHHHHHH
Q 001486 416 YKEALET 422 (1070)
Q Consensus 416 yekal~~ 422 (1070)
+..++++
T Consensus 205 l~~a~kl 211 (377)
T KOG1308|consen 205 LALACKL 211 (377)
T ss_pred HHHHHhc
Confidence 5555554
No 287
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=92.63 E-value=0.22 Score=35.68 Aligned_cols=32 Identities=13% Similarity=0.226 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhcCC
Q 001486 74 GYWRKYADHKARLCSIDKVVEVFERAVQSATY 105 (1070)
Q Consensus 74 ~lW~~ya~~e~~~~~~e~A~~lferAL~~~P~ 105 (1070)
+.|...+..+...+++++|...|++||+.+|.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 35566666666666666666666666666553
No 288
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.53 E-value=1.2 Score=45.92 Aligned_cols=106 Identities=12% Similarity=0.049 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHhhccC--hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHH
Q 001486 359 VIHLFNARYKEQIGDTSAARAAFPESYIDSD--SRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLY 436 (1070)
Q Consensus 359 ~i~~~~a~~e~~~g~~~eA~~~~~~al~~~~--p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~ 436 (1070)
..+...|.++.+.|++++|.+.|.++++.+. ...+++++..+.+....|++..+.....+|-.......+.....++-
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 3555666667777777777777777664331 13356667777766677777777777777776643211101111223
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHhhCC
Q 001486 437 VQFSRLTYTTTGSADNARDILIDGIKHVP 465 (1070)
Q Consensus 437 i~~A~~~~~~~g~~e~Ar~iyekaL~~~P 465 (1070)
+.-|.... ..+++.+|-..|-.++.-+.
T Consensus 117 ~~~gL~~l-~~r~f~~AA~~fl~~~~t~~ 144 (177)
T PF10602_consen 117 VYEGLANL-AQRDFKEAAELFLDSLSTFT 144 (177)
T ss_pred HHHHHHHH-HhchHHHHHHHHHccCcCCC
Confidence 33333333 67888888888876665443
No 289
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.52 E-value=1.7 Score=45.89 Aligned_cols=73 Identities=8% Similarity=0.009 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHH
Q 001486 393 IEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLLLE 472 (1070)
Q Consensus 393 ~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~g~~e~Ar~iyekaL~~~P~~~~lw~ 472 (1070)
..++.+|+.++...|++-++++-....|.. .+.+.++|+.-|+.-. ..=+..+|+.-|.++|++.|.-..+..
T Consensus 230 tpLllNy~QC~L~~~e~yevleh~seiL~~------~~~nvKA~frRakAha-a~Wn~~eA~~D~~~vL~ldpslasvVs 302 (329)
T KOG0545|consen 230 TPLLLNYCQCLLKKEEYYEVLEHCSEILRH------HPGNVKAYFRRAKAHA-AVWNEAEAKADLQKVLELDPSLASVVS 302 (329)
T ss_pred hHHHHhHHHHHhhHHHHHHHHHHHHHHHhc------CCchHHHHHHHHHHHH-hhcCHHHHHHHHHHHHhcChhhHHHHH
Confidence 345778888888888888888888888887 6888899999888776 667888999999999999997555433
No 290
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=92.19 E-value=0.41 Score=51.77 Aligned_cols=55 Identities=15% Similarity=0.221 Sum_probs=27.6
Q ss_pred cCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCc
Q 001486 406 LGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNC 467 (1070)
Q Consensus 406 ~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~g~~e~Ar~iyekaL~~~P~~ 467 (1070)
.|+.++|..+|+.|+++ .|.++.+.+.+|.|.+ ..+++-+|-.+|-+||...|.+
T Consensus 129 ~Gk~ekA~~lfeHAlal------aP~~p~~L~e~G~f~E-~~~~iv~ADq~Y~~ALtisP~n 183 (472)
T KOG3824|consen 129 DGKLEKAMTLFEHALAL------APTNPQILIEMGQFRE-MHNEIVEADQCYVKALTISPGN 183 (472)
T ss_pred ccchHHHHHHHHHHHhc------CCCCHHHHHHHhHHHH-hhhhhHhhhhhhheeeeeCCCc
Confidence 34455555555555554 3455555555555544 4455555555555555554443
No 291
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=92.12 E-value=0.22 Score=57.43 Aligned_cols=93 Identities=11% Similarity=-0.023 Sum_probs=57.4
Q ss_pred HcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhhhchHHHHHHHHHHHHhCCHHHHHHH
Q 001486 301 KQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAA 380 (1070)
Q Consensus 301 ~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~eA~~~ 380 (1070)
...+++.|+.+|.+||...|+...+|-.-+..+.+.+.+-.|..=+.+|++. .|.....|+..|......+++.+|+..
T Consensus 16 ~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~-dP~~~K~Y~rrg~a~m~l~~~~~A~~~ 94 (476)
T KOG0376|consen 16 KDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIEL-DPTYIKAYVRRGTAVMALGEFKKALLD 94 (476)
T ss_pred ccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhc-CchhhheeeeccHHHHhHHHHHHHHHH
Confidence 3456777777777777777777766666666666666666666666666665 333334555555566666666666666
Q ss_pred HHHHhhccChhhHHH
Q 001486 381 FPESYIDSDSRFIEK 395 (1070)
Q Consensus 381 ~~~al~~~~p~~~~~ 395 (1070)
|+... .+.|+...+
T Consensus 95 l~~~~-~l~Pnd~~~ 108 (476)
T KOG0376|consen 95 LEKVK-KLAPNDPDA 108 (476)
T ss_pred HHHhh-hcCcCcHHH
Confidence 66655 444544433
No 292
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=92.11 E-value=4.8 Score=46.89 Aligned_cols=130 Identities=14% Similarity=-0.003 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhhh--chHHHHHHHHHH
Q 001486 291 NWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKR--LPVIHLFNARYK 368 (1070)
Q Consensus 291 ~W~~yi~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~--~p~i~~~~a~~e 368 (1070)
.+..++..+..+ ..+....+.+|.++.|-++..+=-.++.+|++ ++...+...|.+|+..+.+. +..+.-.|+.+-
T Consensus 101 al~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~ 178 (711)
T COG1747 101 ALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLP 178 (711)
T ss_pred HHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHH
Confidence 456666666666 45667788888888888888888889998887 77899999999999887553 334555666653
Q ss_pred HH-hCCHHHHHHHHHHHhhccChhhHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHH
Q 001486 369 EQ-IGDTSAARAAFPESYIDSDSRFIEKVTFKA-NMERRLGNFVAACDTYKEALET 422 (1070)
Q Consensus 369 ~~-~g~~~eA~~~~~~al~~~~p~~~~~w~~~a-~le~~~g~~~~A~~vyekal~~ 422 (1070)
+- -.+.|.-..+..+.-+..-.+...+.+... .-+....++++|+.+....++.
T Consensus 179 ~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 179 ELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEH 234 (711)
T ss_pred HhccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhh
Confidence 33 445666555555543222223344444443 2334457899999999988876
No 293
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=92.04 E-value=22 Score=40.57 Aligned_cols=167 Identities=10% Similarity=0.036 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHhh--cc--ChhhHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcH
Q 001486 359 VIHLFNARYKEQIGDTSAARAAFPESYI--DS--DSRFIEKVTF-KANMERRLGNFVAACDTYKEALETAAEQRKFHTLP 433 (1070)
Q Consensus 359 ~i~~~~a~~e~~~g~~~eA~~~~~~al~--~~--~p~~~~~w~~-~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~ 433 (1070)
.+|+++....+..|+...-+..+...+. .+ +.....+.++ +.+.+.-.+-++.|.++..+..- +........+
T Consensus 170 k~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~--pe~~snne~A 247 (493)
T KOG2581|consen 170 KLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVY--PEAASNNEWA 247 (493)
T ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccC--ccccccHHHH
Confidence 5777777777777877776666654432 11 1111222222 22233333455555555444321 0000011223
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHH--------HHHHHHHHHHHcCCCcchhHHHHHHHHHhccCCccc
Q 001486 434 LLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKL--------LLEELIKFTMVHGGRSHISIVDAVISNALYSRPDVL 505 (1070)
Q Consensus 434 ~l~i~~A~~~~~~~g~~e~Ar~iyekaL~~~P~~~~--------lw~~y~~~e~~~g~~~~~~~ar~l~ekAl~~~~~~s 505 (1070)
......|++-. ..+++..|.++|-.|+.+.|.... .|...+.++ .|+.-+ |.+|.+...
T Consensus 248 RY~yY~GrIka-iqldYssA~~~~~qa~rkapq~~alGf~q~v~k~~ivv~ll--~geiPe----rs~F~Qp~~------ 314 (493)
T KOG2581|consen 248 RYLYYLGRIKA-IQLDYSSALEYFLQALRKAPQHAALGFRQQVNKLMIVVELL--LGEIPE----RSVFRQPGM------ 314 (493)
T ss_pred HHHHHHhhHHH-hhcchhHHHHHHHHHHHhCcchhhhhHHHHHHHHHHHHHHH--cCCCcc----hhhhcCccH------
Confidence 44555666666 788999999999999999997542 344444444 465543 355554422
Q ss_pred ccCChhhHHHHHHHHHHHH--HHhCCHHHHHHHHHHHHHhCCCCc
Q 001486 506 KVFSLEDVEDISSLYLQFL--DLCGTIHDIRNAWNQHIKLFPHTV 548 (1070)
Q Consensus 506 ~~l~~~~~~~l~~~~~~~e--~~~G~~~~a~~~~~ra~~~~p~~~ 548 (1070)
..+. ..|..+- -+.|+++....++++....|-..+
T Consensus 315 -----~ksL---~~Yf~Lt~AVr~gdlkkF~~~leq~k~~f~~D~ 351 (493)
T KOG2581|consen 315 -----RKSL---RPYFKLTQAVRLGDLKKFNETLEQFKDKFQADG 351 (493)
T ss_pred -----HHHH---HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhCC
Confidence 1111 2233333 356777777777777666665444
No 294
>KOG1972 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.92 E-value=28 Score=43.04 Aligned_cols=133 Identities=13% Similarity=0.038 Sum_probs=68.6
Q ss_pred CChHHHHHHHHHHHHHHH-----c---CCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHH--H
Q 001486 284 LDDIQLKNWHDYLSFAEK-----Q---GDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQI--F 353 (1070)
Q Consensus 284 ~~p~~~~~W~~yi~~~~~-----~---g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~--~ 353 (1070)
.++.+-..|..|...... . +.....+ .++..|...+.+...|..||.+....-. +.-.|..+. .
T Consensus 717 ~s~~~~~~y~~ycqiq~~~~~~S~l~f~~~~k~r-F~e~~v~~fsrn~~~~e~wa~l~s~l~q-----k~r~rl~~~k~~ 790 (913)
T KOG1972|consen 717 LSLTEQSLYRSYCQIQIKHFWASNLAFYNLPKVR-FFEEGVTLFSRNAFGWELWAELESELRQ-----KIRKRLSSTKNE 790 (913)
T ss_pred cCchhHHHHHHHHHHHHHHHHhhhhhccccccee-eeccchhhccccchhHHHHHHHHHHHHH-----HHHHHHHHHhhh
Confidence 445556677777632211 1 2233344 4444476777887888888776654321 111111111 0
Q ss_pred h-hhchHHHHHHHHHHHHhCCHHHHHHH-HHHH----hhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001486 354 L-KRLPVIHLFNARYKEQIGDTSAARAA-FPES----YIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALET 422 (1070)
Q Consensus 354 ~-~~~p~i~~~~a~~e~~~g~~~eA~~~-~~~a----l~~~~p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~ 422 (1070)
. ..+..+|-.+...+....-+..|... |..+ .++..|.....|-.|..+..++++++...++|.+|+..
T Consensus 791 ~~~~n~ai~~~~~i~e~~~~~i~~a~t~mf~n~~~si~d~~l~~~~~~WR~yl~~lskl~~~~~~~~~~tkA~~s 865 (913)
T KOG1972|consen 791 VDGRNAAIHAEQVIPETGDDQIMSANTGMFRNADRSILDEELPDENSKWRDYLEALSKLLNKERSKAASTKALDS 865 (913)
T ss_pred hcchhhhhccccccccchHHHHhHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHHHhhhhhhhHHHHHHHhhc
Confidence 0 00112333322222221112233222 2122 22334556678999999888888899999999999987
No 295
>PRK12798 chemotaxis protein; Reviewed
Probab=91.90 E-value=29 Score=40.14 Aligned_cols=194 Identities=12% Similarity=-0.015 Sum_probs=120.1
Q ss_pred HHhhCChhHHHHHHHHHHHHHhhhchHHHHHHHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHH-HHHcCCHHH
Q 001486 333 MESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANM-ERRLGNFVA 411 (1070)
Q Consensus 333 l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~eA~~~~~~al~~~~p~~~~~w~~~a~l-e~~~g~~~~ 411 (1070)
...-|+....+.++.+...- ....-+..+-+-.-.|+-++|++.+...--...+..+..++.++.- .....+..+
T Consensus 91 ~lSGGnP~vlr~L~~~d~~~----~~d~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~ 166 (421)
T PRK12798 91 LLSGGNPATLRKLLARDKLG----NFDQRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPAT 166 (421)
T ss_pred HhcCCCHHHHHHHHHcCCCC----hhhHHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHH
Confidence 34556666665555544321 1122222333334478888888877654211122233334433321 122357888
Q ss_pred HHHHHHHHHHHHHhhccCCC--cHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcH---HHHHHHHHHHHHcCCCcc
Q 001486 412 ACDTYKEALETAAEQRKFHT--LPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCK---LLLEELIKFTMVHGGRSH 486 (1070)
Q Consensus 412 A~~vyekal~~~~~~~~~~~--~~~l~i~~A~~~~~~~g~~e~Ar~iyekaL~~~P~~~---~lw~~y~~~e~~~g~~~~ 486 (1070)
|++.|+.+.=.. |. ..+.-+.-..++.-..|+.++++.+-.+=+..|.+++ .+|..++.....+++...
T Consensus 167 Al~~lD~aRLla------PGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~ 240 (421)
T PRK12798 167 ALKLLDQARLLA------PGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIR 240 (421)
T ss_pred HHHHHHHHHHhC------CchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcccccc
Confidence 888888887662 32 2234444444443378999999888888888888876 577777777777765444
Q ss_pred hhHHHHHHHHHhccCCcccccCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Q 001486 487 ISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQHIKLFPHT 547 (1070)
Q Consensus 487 ~~~ar~l~ekAl~~~~~~s~~l~~~~~~~l~~~~~~~e~~~G~~~~a~~~~~ra~~~~p~~ 547 (1070)
. ..++..+. .++++...+||..-.+---.-|+.+-+..+-+|++.+....
T Consensus 241 ~----~~l~~~ls-------~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~~~~ 290 (421)
T PRK12798 241 D----ARLVEILS-------FMDPERQRELYLRIARAALIDGKTELARFASERALKLADPD 290 (421)
T ss_pred H----HHHHHHHH-------hcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhccCC
Confidence 3 34666664 45667777788777777778999999999999999998543
No 296
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.63 E-value=11 Score=44.71 Aligned_cols=160 Identities=14% Similarity=0.121 Sum_probs=91.6
Q ss_pred CHHHHHHHHHHHhc------------cCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhhh-------------ch
Q 001486 304 DFDWVVKLYERCLI------------PCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKR-------------LP 358 (1070)
Q Consensus 304 ~~~~a~~~yerAL~------------~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~-------------~p 358 (1070)
.|.++...|.-|+. ..|.+.+-.+..+.+....|+.+.|..+.+||+-.+... .|
T Consensus 253 sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~ 332 (665)
T KOG2422|consen 253 SYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLP 332 (665)
T ss_pred HHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCc
Confidence 46677777777764 358888999999999999999998888888888753210 01
Q ss_pred -------HHHH---HHHHHHHHhCCHHHHHHHHHHHhhccChh-hHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHhh
Q 001486 359 -------VIHL---FNARYKEQIGDTSAARAAFPESYIDSDSR-FIEKVTFKANME-RRLGNFVAACDTYKEALETAAEQ 426 (1070)
Q Consensus 359 -------~i~~---~~a~~e~~~g~~~eA~~~~~~al~~~~p~-~~~~w~~~a~le-~~~g~~~~A~~vyekal~~~~~~ 426 (1070)
..++ .+...+.+.|-+..|.+..+-.+ .++|. .+-....+++++ .+..+|.=.+..++..-.. ..-
T Consensus 333 y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlll-sLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~-n~l 410 (665)
T KOG2422|consen 333 YIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLL-SLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENM-NKL 410 (665)
T ss_pred ccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh-hcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhh-ccH
Confidence 1111 12233456777777777766666 55554 333334444433 2334555555555543221 000
Q ss_pred ccCCCcHHHHHHHHHHHHhhcC--CHHHHHHHHHHHHhhCCC
Q 001486 427 RKFHTLPLLYVQFSRLTYTTTG--SADNARDILIDGIKHVPN 466 (1070)
Q Consensus 427 ~~~~~~~~l~i~~A~~~~~~~g--~~e~Ar~iyekaL~~~P~ 466 (1070)
..-.+..+=+.+|+++..... +...|+..+.+|++.+|.
T Consensus 411 -~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 411 -SQLPNFGYSLALARFFLRKNEEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred -hhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence 011122233555666552222 256677777777777774
No 297
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=91.55 E-value=92 Score=45.22 Aligned_cols=131 Identities=12% Similarity=0.050 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHc-----CCH---HHHHHHHHHHHHHHHhhccCC
Q 001486 359 VIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRL-----GNF---VAACDTYKEALETAAEQRKFH 430 (1070)
Q Consensus 359 ~i~~~~a~~e~~~g~~~eA~~~~~~al~~~~p~~~~~w~~~a~le~~~-----g~~---~~A~~vyekal~~~~~~~~~~ 430 (1070)
......|.|..+.|+.++|...|..|+ .++....++|..|+.+.... ++. ..|..+|=.|+...
T Consensus 2813 eff~lkG~f~~kL~~~eeAn~~fs~Av-Qi~~~l~KaW~~Wg~y~~~~f~~e~~ni~~a~~avsCyLqA~~~~------- 2884 (3550)
T KOG0889|consen 2813 EFFTLKGMFLEKLGKFEEANKAFSAAV-QIDDGLGKAWAEWGKYLDNRFNKEPVNISFACNAVSCYLQAARLY------- 2884 (3550)
T ss_pred HHHHhhhHHHHHhcCcchhHHHHHHHH-HHHhhhHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhccc-------
Confidence 455556788999999999999999998 66677789999999854332 322 35667777776652
Q ss_pred CcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCC--cHHHHHHHHHHHHHcCCCcchhHHHHHHHHHhc
Q 001486 431 TLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPN--CKLLLEELIKFTMVHGGRSHISIVDAVISNALY 499 (1070)
Q Consensus 431 ~~~~l~i~~A~~~~~~~g~~e~Ar~iyekaL~~~P~--~~~lw~~y~~~e~~~g~~~~~~~ar~l~ekAl~ 499 (1070)
...+..-.+|+++| .=++++|-...-+++.++-. ....|+.|+--+...-+.+++..++.++-+.-.
T Consensus 2885 ~~skaRk~iakvLw--Lls~dda~~~l~~~~~k~l~~ip~~~wl~~IPQLl~sLs~~e~~~~~~iL~kia~ 2953 (3550)
T KOG0889|consen 2885 NSSKARKLIAKVLW--LLSFDDSLGTLGDVFDKFLGEIPVWNWLYFIPQLLTSLSKKEAKLVRLILIKIAK 2953 (3550)
T ss_pred cchhhHHHHHHHHH--HHHhccccchHHHHHHHhhccCCchhhhhhhHHHHhhccccchhHHHHHHHHHHH
Confidence 22334444455555 33344444444455544433 345677777555554444555556666666553
No 298
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=91.10 E-value=0.6 Score=50.51 Aligned_cols=81 Identities=10% Similarity=0.066 Sum_probs=55.1
Q ss_pred HhCCCCHHHHHHHHHHH---HhcCCCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcCCCH
Q 001486 31 AEGSLDFDEWTSLLSEI---ENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSV 107 (1070)
Q Consensus 31 ~~nP~s~~~W~~li~~~---~~~~~~~~~~a~~vyeraL~~~P~s~~lW~~ya~~e~~~~~~e~A~~lferAL~~~P~s~ 107 (1070)
+.+|..++.-+..++.. ++. |..++|-++|+-||+..|+++++..++..+....+++-.|-.+|-|||...|.+.
T Consensus 107 e~~pa~~kEA~~Al~~A~~~~~~--Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~ns 184 (472)
T KOG3824|consen 107 ENDPAKVKEAILALKAAGRSRKD--GKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNS 184 (472)
T ss_pred ccCchhhHHHHHHHHHHHHHHhc--cchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCch
Confidence 44555554443333322 223 7778888888888888888888888888877777777777888888888877777
Q ss_pred HHHHHH
Q 001486 108 DVWFHY 113 (1070)
Q Consensus 108 ~lW~~y 113 (1070)
+....-
T Consensus 185 eALvnR 190 (472)
T KOG3824|consen 185 EALVNR 190 (472)
T ss_pred HHHhhh
Confidence 665443
No 299
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=91.07 E-value=31 Score=40.57 Aligned_cols=175 Identities=14% Similarity=-0.021 Sum_probs=110.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhhhchHHHHHHHHHHHHhCCH
Q 001486 295 YLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDT 374 (1070)
Q Consensus 295 yi~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~ 374 (1070)
++.+.-.+-+..-+..++.|.|.. ..+-..++.++.+|... ..+.--.+++|.++... ++..+--.++..++. ++-
T Consensus 72 ~~~~f~~n~k~~~veh~c~~~l~~-~e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa~~yEk-ik~ 147 (711)
T COG1747 72 LLTIFGDNHKNQIVEHLCTRVLEY-GESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELADKYEK-IKK 147 (711)
T ss_pred HHHHhccchHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHHHHHHH-hch
Confidence 334333333445567777887764 45556778888888877 46777788998888732 222344445666665 788
Q ss_pred HHHHHHHHHHhhccCh-----hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhcCC
Q 001486 375 SAARAAFPESYIDSDS-----RFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGS 449 (1070)
Q Consensus 375 ~eA~~~~~~al~~~~p-----~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~g~ 449 (1070)
..+..+|.+++..+-| ..-++|-++..+- -.+.+....+..+.-+..+ .....+.+..-.-.+....+
T Consensus 148 sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg-----~~~~~Vl~qdv~~~Ys~~eN 220 (711)
T COG1747 148 SKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLG-----EGRGSVLMQDVYKKYSENEN 220 (711)
T ss_pred hhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhc-----cchHHHHHHHHHHHhccccC
Confidence 8899999999854433 3345677665322 2356666666555544432 22223333332222347899
Q ss_pred HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 001486 450 ADNARDILIDGIKHVPNCKLLLEELIKFTMV 480 (1070)
Q Consensus 450 ~e~Ar~iyekaL~~~P~~~~lw~~y~~~e~~ 480 (1070)
+++|..|..-.|+++-.+...-...+++++.
T Consensus 221 ~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd 251 (711)
T COG1747 221 WTEAIRILKHILEHDEKDVWARKEIIENLRD 251 (711)
T ss_pred HHHHHHHHHHHhhhcchhhhHHHHHHHHHHH
Confidence 9999999999999888777666677776664
No 300
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=91.02 E-value=7.9 Score=44.70 Aligned_cols=157 Identities=13% Similarity=0.058 Sum_probs=89.2
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH----hhc----------------cCC---CcHHHHHHHHHHHHh
Q 001486 389 DSRFIEKVTFKANMERRLGNFVAACDTYKEALETAA----EQR----------------KFH---TLPLLYVQFSRLTYT 445 (1070)
Q Consensus 389 ~p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~----~~~----------------~~~---~~~~l~i~~A~~~~~ 445 (1070)
.|-+++.++..+.+.+..|+...|.++.++||=.++ +.. ..+ ....+...+...+.
T Consensus 36 ~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~- 114 (360)
T PF04910_consen 36 NPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLG- 114 (360)
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHH-
Confidence 456677777777777777777777777777765543 111 011 12234455556666
Q ss_pred hcCCHHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHcCCCcchhHHHHHHHHHhccCCcccccCChhhHHHHHHHHHHHH
Q 001486 446 TTGSADNARDILIDGIKHVPN-CKLLLEELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFL 524 (1070)
Q Consensus 446 ~~g~~e~Ar~iyekaL~~~P~-~~~lw~~y~~~e~~~g~~~~~~~ar~l~ekAl~~~~~~s~~l~~~~~~~l~~~~~~~e 524 (1070)
+.|-+..|.++.+-.+..+|. ++--...++++..-..+. .+-...+++.............-|...-.+..++..++
T Consensus 115 ~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~--y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l~ 192 (360)
T PF04910_consen 115 RRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQ--YQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRLE 192 (360)
T ss_pred hcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCC--HHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHhc
Confidence 899999999999999999998 664444455444433221 11123444443321000000011233334444444444
Q ss_pred HH-----------hCCHHHHHHHHHHHHHhCCCCc
Q 001486 525 DL-----------CGTIHDIRNAWNQHIKLFPHTV 548 (1070)
Q Consensus 525 ~~-----------~G~~~~a~~~~~ra~~~~p~~~ 548 (1070)
.. .++.+.|..++.+|+..+|.-.
T Consensus 193 ~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl 227 (360)
T PF04910_consen 193 KEESSQSSAQSGRSENSESADEALQKAILRFPWVL 227 (360)
T ss_pred CccccccccccccccchhHHHHHHHHHHHHhHHHH
Confidence 33 3445889999999999988743
No 301
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=90.88 E-value=46 Score=40.51 Aligned_cols=36 Identities=22% Similarity=0.075 Sum_probs=26.4
Q ss_pred HHHhccCCCCHHHHHHHHHHHHhhCChhHHHHHHHH
Q 001486 313 ERCLIPCADYPEFWMRYVDFMESKGGREIASYALDR 348 (1070)
Q Consensus 313 erAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~r 348 (1070)
|.+....|.+..+.-.+|..+.+.|.-+.|...|-|
T Consensus 842 E~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 842 EVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred HHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence 344445688888888888888888887777766633
No 302
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=90.62 E-value=0.58 Score=32.92 Aligned_cols=32 Identities=9% Similarity=0.076 Sum_probs=20.9
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHCCCC
Q 001486 39 EWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLC 72 (1070)
Q Consensus 39 ~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P~s 72 (1070)
+++.++..+... ++.++|+.+|+++++.+|+|
T Consensus 2 a~~~~a~~~~~~--g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKL--GDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHH--CHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHc--cCHHHHHHHHHHHHHHCcCC
Confidence 345555555555 67777777777777777764
No 303
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.58 E-value=16 Score=39.22 Aligned_cols=187 Identities=12% Similarity=0.206 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcc-----CCCCHHHHHH-HHHHHHhhCChhHHHHHHHHHHHHHhh-hchHHH
Q 001486 289 LKNWHDYLSFAEKQGDFDWVVKLYERCLIP-----CADYPEFWMR-YVDFMESKGGREIASYALDRATQIFLK-RLPVIH 361 (1070)
Q Consensus 289 ~~~W~~yi~~~~~~g~~~~a~~~yerAL~~-----~p~~~~lW~~-ya~~l~~~g~~e~A~~il~rAl~~~~~-~~p~i~ 361 (1070)
+.+....+....+.|++++....|+..|.. ..++.+--++ ...|.....+.+...+.|+..+..+.. ++..+|
T Consensus 65 FKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLW 144 (440)
T KOG1464|consen 65 FKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLW 144 (440)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceee
Confidence 345555666666788888888888887752 2333332222 233333333445555666666555221 234566
Q ss_pred HH----HHHHHHHhCCHHHHHHHHHHHhhccC-----------hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q 001486 362 LF----NARYKEQIGDTSAARAAFPESYIDSD-----------SRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQ 426 (1070)
Q Consensus 362 ~~----~a~~e~~~g~~~eA~~~~~~al~~~~-----------p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~ 426 (1070)
+. ++.+....++|.+..+++...-..|. ...+++|-.-+.++...++-.+...+|++++..-
T Consensus 145 FKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiK--- 221 (440)
T KOG1464|consen 145 FKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIK--- 221 (440)
T ss_pred eeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhh---
Confidence 53 45666666677666666665432221 1346667666778888888899999999999872
Q ss_pred ccCCCcHH-HHHHH-----HHHHHhhcCCHHHHHHHHHHHHhhCCCcH-------HHHHHHHHHHHHcC
Q 001486 427 RKFHTLPL-LYVQF-----SRLTYTTTGSADNARDILIDGIKHVPNCK-------LLLEELIKFTMVHG 482 (1070)
Q Consensus 427 ~~~~~~~~-l~i~~-----A~~~~~~~g~~e~Ar~iyekaL~~~P~~~-------~lw~~y~~~e~~~g 482 (1070)
.+.|+ +.+.. |.+.. +.|.+++|-.-|-.|++.+-.+. .-++.++.++++.|
T Consensus 222 ---SAIPHPlImGvIRECGGKMHl-reg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~ 286 (440)
T KOG1464|consen 222 ---SAIPHPLIMGVIRECGGKMHL-REGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSG 286 (440)
T ss_pred ---ccCCchHHHhHHHHcCCcccc-ccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcC
Confidence 22222 11111 22232 56788888888888888654321 22444556666544
No 304
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=90.54 E-value=1.1 Score=49.47 Aligned_cols=95 Identities=16% Similarity=0.077 Sum_probs=60.9
Q ss_pred HHHHHhCCHHHHHHHHHHHhhcc--Chh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHH
Q 001486 366 RYKEQIGDTSAARAAFPESYIDS--DSR-FIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRL 442 (1070)
Q Consensus 366 ~~e~~~g~~~eA~~~~~~al~~~--~p~-~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~ 442 (1070)
..+.+..+|..|+..|.++|+.- +++ ..-+|.+++.+...+|++-.|+.-..+|+.. +|...++|+.-|.+
T Consensus 89 N~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~------~P~h~Ka~~R~Akc 162 (390)
T KOG0551|consen 89 NEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL------KPTHLKAYIRGAKC 162 (390)
T ss_pred HHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc------CcchhhhhhhhhHH
Confidence 33445566666666666666422 222 2334566666666677777777777777776 67777777777777
Q ss_pred HHhhcCCHHHHHHHHHHHHhhCCCc
Q 001486 443 TYTTTGSADNARDILIDGIKHVPNC 467 (1070)
Q Consensus 443 ~~~~~g~~e~Ar~iyekaL~~~P~~ 467 (1070)
+. ..++++.|....+.++..+-..
T Consensus 163 ~~-eLe~~~~a~nw~ee~~~~d~e~ 186 (390)
T KOG0551|consen 163 LL-ELERFAEAVNWCEEGLQIDDEA 186 (390)
T ss_pred HH-HHHHHHHHHHHHhhhhhhhHHH
Confidence 76 7777777777777776554433
No 305
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.53 E-value=3.2 Score=43.91 Aligned_cols=107 Identities=12% Similarity=0.022 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcc--------CCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhhhchHHH
Q 001486 290 KNWHDYLSFAEKQGDFDWVVKLYERCLIP--------CADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIH 361 (1070)
Q Consensus 290 ~~W~~yi~~~~~~g~~~~a~~~yerAL~~--------~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~ 361 (1070)
.+...-++-+.+.|++.+|...|..||.. -|.. .=|+.+.+ .+ . -++
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e-~eW~eLdk-----------------~~------t-pLl 233 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGE-PEWLELDK-----------------MI------T-PLL 233 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCC-hHHHHHHH-----------------hh------h-HHH
Confidence 45555666556788999999999998853 1222 12322211 11 1 255
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001486 362 LFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALET 422 (1070)
Q Consensus 362 ~~~a~~e~~~g~~~eA~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~ 422 (1070)
+.|+......|++-++++-....+ ...|++.++++..|......=+.++|++-|.++|++
T Consensus 234 lNy~QC~L~~~e~yevleh~seiL-~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 234 LNYCQCLLKKEEYYEVLEHCSEIL-RHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred HhHHHHHhhHHHHHHHHHHHHHHH-hcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 566666666666666666666666 456666777777776666555667777777777776
No 306
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=90.46 E-value=22 Score=39.46 Aligned_cols=62 Identities=8% Similarity=-0.019 Sum_probs=38.7
Q ss_pred HHHHHHHHHH--hhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCCcchhHHHHHHHHHhc
Q 001486 435 LYVQFSRLTY--TTTGSADNARDILIDGIKHVPNCKLLLEELIKFTMVHGGRSHISIVDAVISNALY 499 (1070)
Q Consensus 435 l~i~~A~~~~--~~~g~~e~Ar~iyekaL~~~P~~~~lw~~y~~~e~~~g~~~~~~~ar~l~ekAl~ 499 (1070)
+...++.++. ....+.++|..+.+.+-+.+|+.+.++...+++..+.++.+. +.+++.+.+.
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~---~~~~L~~mi~ 149 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEE---YEEILMRMIR 149 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhH---HHHHHHHHHH
Confidence 3444444444 122345667777777777788877777777777776444444 4477777775
No 307
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=90.28 E-value=8.5 Score=41.59 Aligned_cols=53 Identities=26% Similarity=0.315 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCcH---HHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Q 001486 409 FVAACDTYKEALETAAEQRKFHTLP---LLYVQFSRLTYTTTGSADNARDILIDGIK 462 (1070)
Q Consensus 409 ~~~A~~vyekal~~~~~~~~~~~~~---~l~i~~A~~~~~~~g~~e~Ar~iyekaL~ 462 (1070)
.+.|..+|++|++..... -.|.+| .+.++|+-|++...|+.++|.++-++|+.
T Consensus 142 ~~~a~~aY~~A~~~a~~~-L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKE-LPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHHHHHHHHHHHHHHHH-SCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcc-cCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 478999999999986543 234444 67899999988789999999988777753
No 308
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=89.95 E-value=0.69 Score=32.94 Aligned_cols=31 Identities=16% Similarity=0.274 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhcC
Q 001486 74 GYWRKYADHKARLCSIDKVVEVFERAVQSAT 104 (1070)
Q Consensus 74 ~lW~~ya~~e~~~~~~e~A~~lferAL~~~P 104 (1070)
++|..++.++...|++++|...|++|++..|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4566666666666666666666666666655
No 309
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=89.90 E-value=13 Score=40.52 Aligned_cols=75 Identities=8% Similarity=-0.007 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhC---CCcHHHHHHHHHHHHHcCCCc
Q 001486 410 VAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHV---PNCKLLLEELIKFTMVHGGRS 485 (1070)
Q Consensus 410 ~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~g~~e~Ar~iyekaL~~~---P~~~~lw~~y~~~e~~~g~~~ 485 (1070)
++-++-++++|.....+++...-.++|.+.|.+|. ..+|.+.+.+...+.++.. .-..++.+.-+++-...|+..
T Consensus 92 eeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~-qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~ 169 (412)
T COG5187 92 EEKIEELDERIREKEEDNGETEGSEADRNIAEYYC-QIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRK 169 (412)
T ss_pred HHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH-HHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHH
Confidence 44455566666665444444456789999999998 8999999988888777642 334577777777777777643
No 310
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=89.82 E-value=0.65 Score=33.91 Aligned_cols=28 Identities=21% Similarity=0.375 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001486 395 KVTFKANMERRLGNFVAACDTYKEALET 422 (1070)
Q Consensus 395 ~w~~~a~le~~~g~~~~A~~vyekal~~ 422 (1070)
+|..++.++.+.|++++|+.+|+++|.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3678899999999999999999998866
No 311
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=89.60 E-value=3.6 Score=45.27 Aligned_cols=63 Identities=14% Similarity=0.185 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHH
Q 001486 74 GYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSF 137 (1070)
Q Consensus 74 ~lW~~ya~~e~~~~~~e~A~~lferAL~~~P~s~~lW~~y~~~~~~~~~~~~~ar~vferAL~~ 137 (1070)
.....+++.+...+.++.+...+++.+..+|.+.++|...+..+... |+...|+..|++.-+.
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~-g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVN-GRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHc-CCchHHHHHHHHHHHH
Confidence 44556667777778899999999999999999999999999999999 9999999999877653
No 312
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=89.12 E-value=3.5 Score=43.83 Aligned_cols=31 Identities=19% Similarity=0.313 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001486 392 FIEKVTFKANMERRLGNFVAACDTYKEALET 422 (1070)
Q Consensus 392 ~~~~w~~~a~le~~~g~~~~A~~vyekal~~ 422 (1070)
...+.+..|.+.+++|++++|...|.+++..
T Consensus 164 ~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 164 EATLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 3566778899999999999999999999986
No 313
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=89.11 E-value=28 Score=41.80 Aligned_cols=33 Identities=18% Similarity=0.240 Sum_probs=26.3
Q ss_pred hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 001486 510 LEDVEDISSLYLQFLDLCGTIHDIRNAWNQHIK 542 (1070)
Q Consensus 510 ~~~~~~l~~~~~~~e~~~G~~~~a~~~~~ra~~ 542 (1070)
|+..++++.-|.++..+...+++|.++|.||-+
T Consensus 800 Pe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr 832 (1081)
T KOG1538|consen 800 PEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGR 832 (1081)
T ss_pred ccccccccchHHHHhhhhhhHHHHHHHHHHhcc
Confidence 356678899999999888889999888877533
No 314
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=89.03 E-value=2.9 Score=37.76 Aligned_cols=48 Identities=17% Similarity=0.027 Sum_probs=34.4
Q ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHCCCC
Q 001486 23 KQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLC 72 (1070)
Q Consensus 23 ~~~le~~l~~nP~s~~~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P~s 72 (1070)
...+++.|..||.|+++.+.++..+... |+++.|...+-.+++.+++.
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~--g~~e~Al~~Ll~~v~~dr~~ 55 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAA--GDYEEALDQLLELVRRDRDY 55 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHT--T-HHHHHHHHHHHHCC-TTC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHhCccc
Confidence 4478888888888888888888877766 78888877777777776654
No 315
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=88.88 E-value=21 Score=33.74 Aligned_cols=62 Identities=15% Similarity=-0.004 Sum_probs=38.6
Q ss_pred HHHHHHHhCCHHHHHHHHHHHhh------ccChhhHHHHHH----HHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 001486 364 NARYKEQIGDTSAARAAFPESYI------DSDSRFIEKVTF----KANMERRLGNFVAACDTYKEALETAAE 425 (1070)
Q Consensus 364 ~a~~e~~~g~~~eA~~~~~~al~------~~~p~~~~~w~~----~a~le~~~g~~~~A~~vyekal~~~~~ 425 (1070)
++......|+|++++..-++++. +++.+.-+.|+. .+..+..+|..++|...|+++-+.+.+
T Consensus 61 Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaE 132 (144)
T PF12968_consen 61 LSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAE 132 (144)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Confidence 34445667777776665555543 344455666764 445666789999999999888877543
No 316
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=88.63 E-value=8.1 Score=42.88 Aligned_cols=92 Identities=12% Similarity=0.001 Sum_probs=68.3
Q ss_pred HHHHHhhCChhHHHHHHHHHHHHHhhh---chHHHHHHHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHc
Q 001486 330 VDFMESKGGREIASYALDRATQIFLKR---LPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRL 406 (1070)
Q Consensus 330 a~~l~~~g~~e~A~~il~rAl~~~~~~---~p~i~~~~a~~e~~~g~~~eA~~~~~~al~~~~p~~~~~w~~~a~le~~~ 406 (1070)
|..|.+..++..|+..|.++++.-.++ +..+|...|....-.|+|-.|+.-..+|+ .++|.+++.+++-+.+...+
T Consensus 88 GN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al-~~~P~h~Ka~~R~Akc~~eL 166 (390)
T KOG0551|consen 88 GNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAAL-KLKPTHLKAYIRGAKCLLEL 166 (390)
T ss_pred hHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhhhhhhHHHHHH
Confidence 455666667778888888887752111 12355555666666888888888888888 78899999999999988888
Q ss_pred CCHHHHHHHHHHHHHH
Q 001486 407 GNFVAACDTYKEALET 422 (1070)
Q Consensus 407 g~~~~A~~vyekal~~ 422 (1070)
..++.|....+.++..
T Consensus 167 e~~~~a~nw~ee~~~~ 182 (390)
T KOG0551|consen 167 ERFAEAVNWCEEGLQI 182 (390)
T ss_pred HHHHHHHHHHhhhhhh
Confidence 8888888888777665
No 317
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=87.95 E-value=4.6 Score=42.90 Aligned_cols=71 Identities=21% Similarity=0.098 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHcCCHHH-------HHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCC
Q 001486 394 EKVTFKANMERRLGNFVA-------ACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVP 465 (1070)
Q Consensus 394 ~~w~~~a~le~~~g~~~~-------A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~g~~e~Ar~iyekaL~~~P 465 (1070)
.++++.|=+++..|+-+. |...|++|++.-...........+....|.+.. +.|++++|.+.|.+.+..-.
T Consensus 119 ~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~r-rlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 119 GLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNR-RLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHcCCC
Confidence 344555555555565444 444444444431000011123456667788887 99999999999999986543
No 318
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=87.93 E-value=14 Score=47.52 Aligned_cols=79 Identities=14% Similarity=0.064 Sum_probs=54.2
Q ss_pred CCHHHHHHHHHHHhccCCCC-HHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhhhchHHHHHHHHHHHHhCCHHHHHHHH
Q 001486 303 GDFDWVVKLYERCLIPCADY-PEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAF 381 (1070)
Q Consensus 303 g~~~~a~~~yerAL~~~p~~-~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~eA~~~~ 381 (1070)
-+++..+.-|++||...-.. ...|-....+-.++|-+++|..+|.-..+. ...++..||..+.+.+.+++|.-.|
T Consensus 887 F~ID~~L~ry~~AL~hLs~~~~~~~~e~~n~I~kh~Ly~~aL~ly~~~~e~----~k~i~~~ya~hL~~~~~~~~Aal~Y 962 (1265)
T KOG1920|consen 887 FKIDDYLKRYEDALSHLSECGETYFPECKNYIKKHGLYDEALALYKPDSEK----QKVIYEAYADHLREELMSDEAALMY 962 (1265)
T ss_pred eeHHHHHHHHHHHHHHHHHcCccccHHHHHHHHhcccchhhhheeccCHHH----HHHHHHHHHHHHHHhccccHHHHHH
Confidence 36778888899998642111 345666666777888777777777555443 3357888888888888888887777
Q ss_pred HHHh
Q 001486 382 PESY 385 (1070)
Q Consensus 382 ~~al 385 (1070)
+++-
T Consensus 963 e~~G 966 (1265)
T KOG1920|consen 963 ERCG 966 (1265)
T ss_pred HHhc
Confidence 7653
No 319
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=87.76 E-value=21 Score=43.81 Aligned_cols=147 Identities=14% Similarity=-0.033 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHhh-----CChhHHHHHHHHHHHHHh----hhchHHHHHHHHHHHHhC---
Q 001486 305 FDWVVKLYERCLIPCADYPEFWMRYVDFMESK-----GGREIASYALDRATQIFL----KRLPVIHLFNARYKEQIG--- 372 (1070)
Q Consensus 305 ~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~-----g~~e~A~~il~rAl~~~~----~~~p~i~~~~a~~e~~~g--- 372 (1070)
...+...|+.+... .+...-+.++.++..- .+.+.|...|++|.+.+. ...+.....++.++.+..
T Consensus 228 ~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~ 305 (552)
T KOG1550|consen 228 LSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVE 305 (552)
T ss_pred hhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCc
Confidence 34677777777653 2333333333333322 356888888888876211 123334455666655422
Q ss_pred --CHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHh--
Q 001486 373 --DTSAARAAFPESYIDSDSRFIEKVTFKANMERRL---GNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYT-- 445 (1070)
Q Consensus 373 --~~~eA~~~~~~al~~~~p~~~~~w~~~a~le~~~---g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~-- 445 (1070)
+.+.|..+|.++- .. +....-+.++.++..- .++..|..+|..|.+. .....++.+|.|+..
T Consensus 306 ~~d~~~A~~~~~~aA-~~--g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--------G~~~A~~~la~~y~~G~ 374 (552)
T KOG1550|consen 306 KIDYEKALKLYTKAA-EL--GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--------GHILAIYRLALCYELGL 374 (552)
T ss_pred cccHHHHHHHHHHHH-hc--CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--------CChHHHHHHHHHHHhCC
Confidence 5667888888776 33 3444555566655432 2567788888887764 345667777777652
Q ss_pred -hcCCHHHHHHHHHHHHhhC
Q 001486 446 -TTGSADNARDILIDGIKHV 464 (1070)
Q Consensus 446 -~~g~~e~Ar~iyekaL~~~ 464 (1070)
...+.+.|+.+|.++.++.
T Consensus 375 gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 375 GVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred CcCCCHHHHHHHHHHHHHcc
Confidence 1236788888888888776
No 320
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=87.71 E-value=0.75 Score=31.06 Aligned_cols=32 Identities=16% Similarity=0.164 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCC
Q 001486 434 LLYVQFSRLTYTTTGSADNARDILIDGIKHVPN 466 (1070)
Q Consensus 434 ~l~i~~A~~~~~~~g~~e~Ar~iyekaL~~~P~ 466 (1070)
.+|..+|.++. ..|++++|..+|+++++..|.
T Consensus 2 ~~~~~~a~~~~-~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYL-KLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHH-HHhhHHHHHHHHHHHHccCCC
Confidence 46788899988 899999999999999998875
No 321
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=87.64 E-value=0.91 Score=33.15 Aligned_cols=28 Identities=11% Similarity=0.158 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHhh
Q 001486 435 LYVQFSRLTYTTTGSADNARDILIDGIKH 463 (1070)
Q Consensus 435 l~i~~A~~~~~~~g~~e~Ar~iyekaL~~ 463 (1070)
.|.++|.++. ..|++++|..+|+++|..
T Consensus 1 al~~Lg~~~~-~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYR-QQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHH-HCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHH-HcCCHHHHHHHHHHHHHh
Confidence 3678899998 999999999999996643
No 322
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=87.57 E-value=9.9 Score=45.10 Aligned_cols=132 Identities=21% Similarity=0.149 Sum_probs=78.1
Q ss_pred cCCHHHHHHHHH--HHhccCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhhhchHHHHHHHHHHHHhCCHHHHHH
Q 001486 302 QGDFDWVVKLYE--RCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARA 379 (1070)
Q Consensus 302 ~g~~~~a~~~ye--rAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~eA~~ 379 (1070)
.++++.+....+ +.+..-| .+.....+.|+++.|..+.|+.+. .+|...+. +-.+.|+++.|.+
T Consensus 274 ~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~---------~D~~~rFe---LAl~lg~L~~A~~ 339 (443)
T PF04053_consen 274 RGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFV---------TDPDHRFE---LALQLGNLDIALE 339 (443)
T ss_dssp TT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHS---------S-HHHHHH---HHHHCT-HHHHHH
T ss_pred cCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhc---------CChHHHhH---HHHhcCCHHHHHH
Confidence 567777666555 2222233 456778889999999777666544 23433332 3356899998877
Q ss_pred HHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 001486 380 AFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILID 459 (1070)
Q Consensus 380 ~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~g~~e~Ar~iyek 459 (1070)
+... . +....|..+++.....|+++-|..+|.++-+. ..+. .++. ..|+.+.-+++-+.
T Consensus 340 ~a~~----~--~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~----------~~L~----lLy~-~~g~~~~L~kl~~~ 398 (443)
T PF04053_consen 340 IAKE----L--DDPEKWKQLGDEALRQGNIELAEECYQKAKDF----------SGLL----LLYS-STGDREKLSKLAKI 398 (443)
T ss_dssp HCCC----C--STHHHHHHHHHHHHHTTBHHHHHHHHHHCT-H----------HHHH----HHHH-HCT-HHHHHHHHHH
T ss_pred HHHh----c--CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCc----------cccH----HHHH-HhCCHHHHHHHHHH
Confidence 6443 2 24558999999999999999999999887554 2222 2223 78888888888877
Q ss_pred HHhhCCCcH
Q 001486 460 GIKHVPNCK 468 (1070)
Q Consensus 460 aL~~~P~~~ 468 (1070)
|....-.+.
T Consensus 399 a~~~~~~n~ 407 (443)
T PF04053_consen 399 AEERGDINI 407 (443)
T ss_dssp HHHTT-HHH
T ss_pred HHHccCHHH
Confidence 765444333
No 323
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=87.36 E-value=26 Score=43.07 Aligned_cols=143 Identities=15% Similarity=-0.006 Sum_probs=96.0
Q ss_pred CHHHHHHHHHHHhcc-----CCCCHHHHHHHHHHHHhhC-----ChhHHHHHHHHHHHHHhhhchHHHHHHHHHHHHh--
Q 001486 304 DFDWVVKLYERCLIP-----CADYPEFWMRYVDFMESKG-----GREIASYALDRATQIFLKRLPVIHLFNARYKEQI-- 371 (1070)
Q Consensus 304 ~~~~a~~~yerAL~~-----~p~~~~lW~~ya~~l~~~g-----~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~-- 371 (1070)
|.+.++..|++|... .-.+...-+.++.+|.+.. +.+.|..+|.+|... .+|..-+..+.+.+.-
T Consensus 264 d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~---g~~~a~~~lg~~~~~g~~ 340 (552)
T KOG1550|consen 264 DLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL---GNPDAQYLLGVLYETGTK 340 (552)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc---CCchHHHHHHHHHHcCCc
Confidence 688899999998761 1113445667888777753 456788999888876 5677777777765443
Q ss_pred -CCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhh
Q 001486 372 -GDTSAARAAFPESYIDSDSRFIEKVTFKANMERRL----GNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTT 446 (1070)
Q Consensus 372 -g~~~eA~~~~~~al~~~~p~~~~~w~~~a~le~~~----g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~ 446 (1070)
.++..|.++|..|.. .++..+.+.++.++..- -+.+.|+..|.++.+. . .+.+...++.+++..
T Consensus 341 ~~d~~~A~~yy~~Aa~---~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~------g--~~~A~~~~~~~~~~g 409 (552)
T KOG1550|consen 341 ERDYRRAFEYYSLAAK---AGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEK------G--NPSAAYLLGAFYEYG 409 (552)
T ss_pred cccHHHHHHHHHHHHH---cCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHc------c--ChhhHHHHHHHHHHc
Confidence 367789999999873 35677788888887653 2678999999999987 2 344344444444423
Q ss_pred cCCHHHHHHHHHHH
Q 001486 447 TGSADNARDILIDG 460 (1070)
Q Consensus 447 ~g~~e~Ar~iyeka 460 (1070)
.++++.+.-.|...
T Consensus 410 ~~~~~~~~~~~~~~ 423 (552)
T KOG1550|consen 410 VGRYDTALALYLYL 423 (552)
T ss_pred cccccHHHHHHHHH
Confidence 36666555544433
No 324
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=86.55 E-value=56 Score=36.31 Aligned_cols=36 Identities=19% Similarity=0.112 Sum_probs=25.1
Q ss_pred ccccccc--cccccccccCCCCCcCCCccCCCCCCCCCC
Q 001486 580 PFESEHL--MPSASQDKKFSPPEKSDSESGDDATSLPSN 616 (1070)
Q Consensus 580 ~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 616 (1070)
--|.|-+ .++-+|++-|=-+|-.|. .|-+|-.||..
T Consensus 443 ctWegtfrmiPyple~ghlFypyp~ct-E~ADrELLPsf 480 (556)
T KOG3807|consen 443 CTWEGTFRMIPYPLEKGHLFYPYPSCT-ETADRELLPSF 480 (556)
T ss_pred eeecCceeccccccccCccccCCcchh-hhcchhhccch
Confidence 3455544 456777776777898995 47777788887
No 325
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=86.04 E-value=2.8 Score=48.44 Aligned_cols=47 Identities=17% Similarity=0.247 Sum_probs=36.1
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHH
Q 001486 392 FIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTY 444 (1070)
Q Consensus 392 ~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~ 444 (1070)
...+.++.+..+.-.|..-.|..+|.++... +...|.+|+.+|.+..
T Consensus 334 s~eilYNcG~~~Lh~grPl~AfqCf~~av~v------fh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 334 SMEILYNCGLLYLHSGRPLLAFQCFQKAVHV------FHRNPRLWLRLAECCI 380 (696)
T ss_pred chhhHHhhhHHHHhcCCcHHHHHHHHHHHHH------HhcCcHHHHHHHHHHH
Confidence 3556777777777778888888888888887 4777888888887643
No 326
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=85.86 E-value=78 Score=36.98 Aligned_cols=85 Identities=8% Similarity=0.016 Sum_probs=55.4
Q ss_pred CcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcCCC-------------HHHHHHHHH--HH
Q 001486 53 DDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYS-------------VDVWFHYCS--LS 117 (1070)
Q Consensus 53 ~~~~~a~~vyeraL~~~P~s~~lW~~ya~~e~~~~~~e~A~~lferAL~~~P~s-------------~~lW~~y~~--~~ 117 (1070)
++++......-..-+.+|.+.-+-..-+-+..+.+.+.+|...|..--...-.. .++|+.++. -+
T Consensus 59 ~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sL 138 (549)
T PF07079_consen 59 NNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSL 138 (549)
T ss_pred hhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHH
Confidence 466666666666667788666444444444566788889988887665542222 246655543 34
Q ss_pred HhhCCChhHHHHHHHHHHHHc
Q 001486 118 MSTFEDPNDVRRLFKRALSFV 138 (1070)
Q Consensus 118 ~~~~~~~~~ar~vferAL~~~ 138 (1070)
++. |.+.++|.+++|.+..+
T Consensus 139 Ie~-g~f~EgR~iLn~i~~~l 158 (549)
T PF07079_consen 139 IET-GRFSEGRAILNRIIERL 158 (549)
T ss_pred Hhc-CCcchHHHHHHHHHHHH
Confidence 566 89999999999888654
No 327
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=85.35 E-value=7.1 Score=46.16 Aligned_cols=116 Identities=16% Similarity=0.051 Sum_probs=83.3
Q ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhhhch-HHHHHHHHHHHHhCCHHHHHHHHHHH
Q 001486 306 DWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLP-VIHLFNARYKEQIGDTSAARAAFPES 384 (1070)
Q Consensus 306 ~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p-~i~~~~a~~e~~~g~~~eA~~~~~~a 384 (1070)
+....+.-.++...+.+..+....+.|....|+.-+|...+.+|+....+... .+.+..|.++.+.|...+|--++..|
T Consensus 196 ~~~~~~~~~glq~~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA 275 (886)
T KOG4507|consen 196 DDIGHLIHEGLQKNTSSWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAA 275 (886)
T ss_pred HHHHHHHHHhhhcCchhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehh
Confidence 44555666677777777666665555555578999999999999976333222 46778899999999999998888877
Q ss_pred hhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001486 385 YIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALET 422 (1070)
Q Consensus 385 l~~~~p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~ 422 (1070)
++ -.+....-++..+.++..+|++....-.|+.+.+.
T Consensus 276 ~~-dA~~~t~n~y~l~~i~aml~~~N~S~~~ydha~k~ 312 (886)
T KOG4507|consen 276 LD-DADFFTSNYYTLGNIYAMLGEYNHSVLCYDHALQA 312 (886)
T ss_pred cc-CCccccccceeHHHHHHHHhhhhhhhhhhhhhhcc
Confidence 73 22333333566677777778888888888877776
No 328
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=85.32 E-value=8.6 Score=43.98 Aligned_cols=136 Identities=10% Similarity=0.073 Sum_probs=92.6
Q ss_pred cchHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH----Hh-CCHHHHHHH
Q 001486 21 FGKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKA----RL-CSIDKVVEV 95 (1070)
Q Consensus 21 ~~~~~le~~l~~nP~s~~~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P~s~~lW~~ya~~e~----~~-~~~e~A~~l 95 (1070)
.+....+.+|+.||+++.+|....-.+.+....++.+=..+.+++|+.+|.++..|.. =++.. +. +.-.+=..+
T Consensus 93 ~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~Y-RRfV~~~~~~~~~~~~~El~f 171 (421)
T KOG0529|consen 93 EELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHY-RRFVVEQAERSRNLEKEELEF 171 (421)
T ss_pred HHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHH-HHHHHHHHhcccccchhHHHH
Confidence 3455788999999999999999998887653345778889999999999999998853 22221 11 123445667
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhhC-----C---ChhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHc
Q 001486 96 FERAVQSATYSVDVWFHYCSLSMSTF-----E---DPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQ 158 (1070)
Q Consensus 96 ferAL~~~P~s~~lW~~y~~~~~~~~-----~---~~~~ar~vferAL~~~p~~~~s~~lW~~yi~fe~~~ 158 (1070)
..+++..++.+...|-.---++.... | ..+...+-++....++=+|+.....|.. ..|..+.
T Consensus 172 tt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY-~rWLl~~ 241 (421)
T KOG0529|consen 172 TTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFY-HRWLLGR 241 (421)
T ss_pred HHHHHhccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeee-hHHhhcc
Confidence 88999989999999965544443221 3 2455667777777776555555566744 4444433
No 329
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=84.69 E-value=34 Score=34.43 Aligned_cols=55 Identities=20% Similarity=0.201 Sum_probs=40.1
Q ss_pred HHHHHhhCChhHHHHHHHHHHHHHhhhchHHHHHHHHHHHHhCCHHHHHHHHHHHh
Q 001486 330 VDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESY 385 (1070)
Q Consensus 330 a~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~eA~~~~~~al 385 (1070)
+.+-...++.+++..++ .|+.+..|+.+.+.+.-+.+....|++++|+.+|+.+.
T Consensus 17 ~~~al~~~~~~D~e~lL-~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~ 71 (160)
T PF09613_consen 17 LSVALRLGDPDDAEALL-DALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELE 71 (160)
T ss_pred HHHHHccCChHHHHHHH-HHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 33334455677777777 55666677888888888888888888888888888764
No 330
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=84.47 E-value=5.1 Score=36.42 Aligned_cols=60 Identities=18% Similarity=0.276 Sum_probs=43.8
Q ss_pred HcCCHHHHHHHHHHHHHHHHhhccCC---CcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCC
Q 001486 405 RLGNFVAACDTYKEALETAAEQRKFH---TLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVP 465 (1070)
Q Consensus 405 ~~g~~~~A~~vyekal~~~~~~~~~~---~~~~l~i~~A~~~~~~~g~~e~Ar~iyekaL~~~P 465 (1070)
+.|++..|.+.+.+..+......... ......+++|.+.. ..|++++|...+++||+...
T Consensus 10 ~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~-~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 10 RSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHR-RFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred HcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHH
Confidence 45788888877777777654333222 23456778888887 89999999999999998643
No 331
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=84.29 E-value=7.6 Score=42.74 Aligned_cols=50 Identities=2% Similarity=-0.017 Sum_probs=46.1
Q ss_pred CcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 001486 53 DDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQS 102 (1070)
Q Consensus 53 ~~~~~a~~vyeraL~~~P~s~~lW~~ya~~e~~~~~~e~A~~lferAL~~ 102 (1070)
++++.+...+++.+..+|.+..+|..+++.+...|+...|+..|++.-..
T Consensus 167 ~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 167 GRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred ccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 67889999999999999999999999999999999999999999876654
No 332
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=84.21 E-value=1.2e+02 Score=37.80 Aligned_cols=112 Identities=9% Similarity=0.068 Sum_probs=71.7
Q ss_pred hHHHHHHHHhCC----CCHHHHHHHHHHHH-hcCCCcHHHHHHHHHHHHHHCC--CCHHH----HHHHHHHHHHhCCHHH
Q 001486 23 KQGLEEFIAEGS----LDFDEWTSLLSEIE-NSCPDDIEMIGLVYDSFLAEFP--LCYGY----WRKYADHKARLCSIDK 91 (1070)
Q Consensus 23 ~~~le~~l~~nP----~s~~~W~~li~~~~-~~~~~~~~~a~~vyeraL~~~P--~s~~l----W~~ya~~e~~~~~~e~ 91 (1070)
...|+..++..+ ..+...++|+.++- .+ .+++.|+..++|++...- +-.++ =..+++++.+.+ ...
T Consensus 41 i~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT--~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~-~~~ 117 (608)
T PF10345_consen 41 IKCLEAVLKQFKLSPRQEARVRLRLASILLEET--ENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTN-PKA 117 (608)
T ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcC-HHH
Confidence 345666664333 24567777888763 45 789999999999987663 32221 112233444444 444
Q ss_pred HHHHHHHHHHhcCC-CHHHHHHHHHHHH-----hhCCChhHHHHHHHHHHHHc
Q 001486 92 VVEVFERAVQSATY-SVDVWFHYCSLSM-----STFEDPNDVRRLFKRALSFV 138 (1070)
Q Consensus 92 A~~lferAL~~~P~-s~~lW~~y~~~~~-----~~~~~~~~ar~vferAL~~~ 138 (1070)
|...+.+++..+-. ....|.-.++|+. .. +|+..|...++......
T Consensus 118 a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~-~d~~~Al~~L~~~~~~a 169 (608)
T PF10345_consen 118 ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQH-KDYNAALENLQSIAQLA 169 (608)
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHh
Confidence 99999999987533 3456777777762 22 58888888888877654
No 333
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=84.02 E-value=1.3e+02 Score=38.09 Aligned_cols=117 Identities=13% Similarity=0.057 Sum_probs=78.0
Q ss_pred chHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCh-------hhHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHHHHhhcc
Q 001486 357 LPVIHLFNARYKEQIGDTSAARAAFPESYIDSDS-------RFIEKVTF-KANMERRLGNFVAACDTYKEALETAAEQRK 428 (1070)
Q Consensus 357 ~p~i~~~~a~~e~~~g~~~eA~~~~~~al~~~~p-------~~~~~w~~-~a~le~~~g~~~~A~~vyekal~~~~~~~~ 428 (1070)
.|.+-+.+++......++++|..++.++...... +..-.|.. .+.+....|+++.|.++.+.++..++...
T Consensus 414 ~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~- 492 (894)
T COG2909 414 TPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAA- 492 (894)
T ss_pred CchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccccc-
Confidence 4566677777778889999999988887532221 11112332 34455667999999999999999864322
Q ss_pred CCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhC----CCcHHHHHHHH
Q 001486 429 FHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHV----PNCKLLLEELI 475 (1070)
Q Consensus 429 ~~~~~~l~i~~A~~~~~~~g~~e~Ar~iyekaL~~~----P~~~~lw~~y~ 475 (1070)
.....-++...|.+.. ..|++++|+.+...+.+.. .-...+|..+.
T Consensus 493 ~~~r~~~~sv~~~a~~-~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~ 542 (894)
T COG2909 493 YRSRIVALSVLGEAAH-IRGELTQALALMQQAEQMARQHDVYHLALWSLLQ 542 (894)
T ss_pred chhhhhhhhhhhHHHH-HhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 2223345566666666 8899999999988888752 22335676663
No 334
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=83.86 E-value=10 Score=41.38 Aligned_cols=101 Identities=16% Similarity=0.119 Sum_probs=63.5
Q ss_pred hCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH-HHHCCCCHHHHH----------------HHHHHHHHhCCHHHHHH
Q 001486 32 EGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSF-LAEFPLCYGYWR----------------KYADHKARLCSIDKVVE 94 (1070)
Q Consensus 32 ~nP~s~~~W~~li~~~~~~~~~~~~~a~~vyera-L~~~P~s~~lW~----------------~ya~~e~~~~~~e~A~~ 94 (1070)
.--.|+..|.+.++-+.... ..+++++++.... =.++|...-.|- ..++++.+.|.+.+|..
T Consensus 222 ~~k~Dv~e~es~~rqi~~in-ltide~kelv~~ykgdyl~e~~y~Waedererle~ly~kllgkva~~yle~g~~neAi~ 300 (361)
T COG3947 222 LPKYDVQEYESLARQIEAIN-LTIDELKELVGQYKGDYLPEADYPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQ 300 (361)
T ss_pred CccccHHHHHHHhhhhhccc-cCHHHHHHHHHHhcCCcCCccccccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 33457777777777554421 3445544444333 233454444442 23344556678888888
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhhCCChhHHHHHHHHH
Q 001486 95 VFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRA 134 (1070)
Q Consensus 95 lferAL~~~P~s~~lW~~y~~~~~~~~~~~~~ar~vferA 134 (1070)
+..|++..+|.+...|..+.+.+... ||--.+.+-|+|.
T Consensus 301 l~qr~ltldpL~e~~nk~lm~~la~~-gD~is~~khyery 339 (361)
T COG3947 301 LHQRALTLDPLSEQDNKGLMASLATL-GDEISAIKHYERY 339 (361)
T ss_pred HHHHHhhcChhhhHHHHHHHHHHHHh-ccchhhhhHHHHH
Confidence 88899888888888888888888877 7755555555543
No 335
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=83.59 E-value=46 Score=33.46 Aligned_cols=64 Identities=19% Similarity=0.077 Sum_probs=32.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcH
Q 001486 398 FKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCK 468 (1070)
Q Consensus 398 ~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~g~~e~Ar~iyekaL~~~P~~~ 468 (1070)
..+.+-.+.++.+.+..++....-+ .|..+.+-+.-|.+.. ..|++.+|+.+|+.....-|..+
T Consensus 15 e~~~~al~~~~~~D~e~lL~ALrvL------RP~~~e~~~~~~~l~i-~r~~w~dA~rlLr~l~~~~~~~p 78 (160)
T PF09613_consen 15 EVLSVALRLGDPDDAEALLDALRVL------RPEFPELDLFDGWLHI-VRGDWDDALRLLRELEERAPGFP 78 (160)
T ss_pred HHHHHHHccCChHHHHHHHHHHHHh------CCCchHHHHHHHHHHH-HhCCHHHHHHHHHHHhccCCCCh
Confidence 3333333445555555555544444 3444544444444444 55666666666665554444433
No 336
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=83.56 E-value=96 Score=36.14 Aligned_cols=130 Identities=14% Similarity=0.015 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHH--HHHHH--HHHHHhhCChhHHHHHHHHHHHHHhh--hchHHHHHH
Q 001486 291 NWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPE--FWMRY--VDFMESKGGREIASYALDRATQIFLK--RLPVIHLFN 364 (1070)
Q Consensus 291 ~W~~yi~~~~~~g~~~~a~~~yerAL~~~p~~~~--lW~~y--a~~l~~~g~~e~A~~il~rAl~~~~~--~~p~i~~~~ 364 (1070)
.|.....++ ..++|..|..+|+.++...+.... ++..+ |..+|..-++++|.+.+++.+..... .....+...
T Consensus 134 ~~~~a~~l~-n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l~~~~~~l~~~ 212 (379)
T PF09670_consen 134 EWRRAKELF-NRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKALNQEREGLKEL 212 (379)
T ss_pred HHHHHHHHH-hcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhhHhHHHHHHHH
Confidence 344444444 578899999999998875333333 44443 33556777889999999998765211 001111111
Q ss_pred HHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHH
Q 001486 365 ARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERR--LGNFVAACDTYKEALETA 423 (1070)
Q Consensus 365 a~~e~~~g~~~eA~~~~~~al~~~~p~~~~~w~~~a~le~~--~g~~~~A~~vyekal~~~ 423 (1070)
.........+..+........ ..+...-+...+.+.++| .|.++.|...+-++++++
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl~ 271 (379)
T PF09670_consen 213 VEVLKALESILSALEDKKQRQ--KKLYYALLADLLANAERRAAQGRYDDAVARLYRALELL 271 (379)
T ss_pred HHHHHHHHhhccchhhhhccc--cccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 111111111111111111110 011233445556667775 489999999999999985
No 337
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=83.49 E-value=9.3 Score=34.71 Aligned_cols=59 Identities=25% Similarity=0.313 Sum_probs=38.2
Q ss_pred HHhCCHHHHHHHHHHHhh----ccCh----hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhc
Q 001486 369 EQIGDTSAARAAFPESYI----DSDS----RFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQR 427 (1070)
Q Consensus 369 ~~~g~~~eA~~~~~~al~----~~~p----~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~ 427 (1070)
.+.|++.+|.+.+.+..+ .... .....++..+.+....|++++|...+++|++......
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~ 75 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENG 75 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHC
Confidence 345666666555544432 1111 2334567788888889999999999999999865433
No 338
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=82.58 E-value=1.6 Score=45.77 Aligned_cols=56 Identities=21% Similarity=0.298 Sum_probs=43.4
Q ss_pred HHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001486 366 RYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALET 422 (1070)
Q Consensus 366 ~~e~~~g~~~eA~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~ 422 (1070)
.+....++.+.|.++|.+++ ++.|.-..-|.+.+.+.++.|+++.|.+.|++.+++
T Consensus 3 ~~~~~~~D~~aaaely~qal-~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~l 58 (287)
T COG4976 3 YMLAESGDAEAAAELYNQAL-ELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLEL 58 (287)
T ss_pred chhcccCChHHHHHHHHHHh-hcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcC
Confidence 34456677777888888887 777777778888888877888888888888888877
No 339
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=81.74 E-value=15 Score=33.14 Aligned_cols=65 Identities=12% Similarity=0.116 Sum_probs=47.2
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHcC
Q 001486 60 LVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVG 139 (1070)
Q Consensus 60 ~vyeraL~~~P~s~~lW~~ya~~e~~~~~~e~A~~lferAL~~~P~s~~lW~~y~~~~~~~~~~~~~ar~vferAL~~~p 139 (1070)
..+++.++.+|++....+.++..+...|+++.|.+.|-..+...+.. +-+.+|+.+=..+..+|
T Consensus 9 ~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~----------------~~~~ar~~ll~~f~~lg 72 (90)
T PF14561_consen 9 AALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY----------------EDDAARKRLLDIFELLG 72 (90)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC----------------CCCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc----------------cccHHHHHHHHHHHHcC
Confidence 56788899999999999999999999999999998888888776432 22456666666666666
Q ss_pred C
Q 001486 140 K 140 (1070)
Q Consensus 140 ~ 140 (1070)
.
T Consensus 73 ~ 73 (90)
T PF14561_consen 73 P 73 (90)
T ss_dssp T
T ss_pred C
Confidence 5
No 340
>PRK10941 hypothetical protein; Provisional
Probab=81.30 E-value=7.1 Score=42.98 Aligned_cols=56 Identities=13% Similarity=-0.092 Sum_probs=32.0
Q ss_pred CcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcCCCHH
Q 001486 53 DDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVD 108 (1070)
Q Consensus 53 ~~~~~a~~vyeraL~~~P~s~~lW~~ya~~e~~~~~~e~A~~lferAL~~~P~s~~ 108 (1070)
+++++|.++.+++|...|+++..|..-+-++...+.+..|+.-|+..|+.||.+++
T Consensus 195 ~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~ 250 (269)
T PRK10941 195 KQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPI 250 (269)
T ss_pred CcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchh
Confidence 45555555555555555555555555555555555555555555555555555543
No 341
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=80.94 E-value=52 Score=31.27 Aligned_cols=103 Identities=13% Similarity=0.010 Sum_probs=62.9
Q ss_pred HHHHHHHHHH--HHhCCHHHHHHHHHHHhhcc---------ChhhHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 001486 359 VIHLFNARYK--EQIGDTSAARAAFPESYIDS---------DSRFIEK--VTFKANMERRLGNFVAACDTYKEALETAAE 425 (1070)
Q Consensus 359 ~i~~~~a~~e--~~~g~~~eA~~~~~~al~~~---------~p~~~~~--w~~~a~le~~~g~~~~A~~vyekal~~~~~ 425 (1070)
..|+.++.-+ ..-|-|++|...+.++++.. +.+-.++ +-.++.....+|.|+++...-+++|..|.-
T Consensus 8 ~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNR 87 (144)
T PF12968_consen 8 MAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNR 87 (144)
T ss_dssp HHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhh
Confidence 3455554443 45678888888888886311 1111122 223445667889999999999999988743
Q ss_pred hcc-CCCcHHHHH----HHHHHHHhhcCCHHHHHHHHHHHHh
Q 001486 426 QRK-FHTLPLLYV----QFSRLTYTTTGSADNARDILIDGIK 462 (1070)
Q Consensus 426 ~~~-~~~~~~l~i----~~A~~~~~~~g~~e~Ar~iyekaL~ 462 (1070)
.-. ....-++|| ..|..+. ..|+.++|.+.|+.+.+
T Consensus 88 RGEL~qdeGklWIaaVfsra~Al~-~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 88 RGELHQDEGKLWIAAVFSRAVALE-GLGRKEEALKEFRMAGE 128 (144)
T ss_dssp H--TTSTHHHHHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHH
T ss_pred ccccccccchhHHHHHHHHHHHHH-hcCChHHHHHHHHHHHH
Confidence 221 223345664 4455666 89999999999998864
No 342
>PF03154 Atrophin-1: Atrophin-1 family; InterPro: IPR002951 Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA (OMIM:125370) is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins [, ]. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity [].. This entry includes Atrophin-1 and related proteins.
Probab=80.85 E-value=95 Score=39.58 Aligned_cols=96 Identities=20% Similarity=0.282 Sum_probs=45.9
Q ss_pred CCCccccccccccccccccccCCccccc----ccCCCcccc--cccccccCCccchhhhhhhhhhcccccchhhhhccch
Q 001486 622 PENHDIRSDGAEVDILLSGEADSSSQDR----MQQVPPEAA--EQHSQDACDPEVLSLDLAHQVTNENETVQASEAFSEE 695 (1070)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 695 (1070)
+-|-|+++.||.-..-.|--..+.-+|. -.-+++|+. .++.|-.-|..++..|---..+....-+ +..+.-
T Consensus 34 p~~e~~rs~gr~sp~~~stss~d~k~e~~~~~~kk~kee~~~~~k~~k~~r~~~~~~~~~~~~~~~k~~k~---~~~~~p 110 (982)
T PF03154_consen 34 PTNEDLRSSGRASPSAASTSSSDSKAESSKKTNKKIKEEASSPLKSSKRQREKPASESEEPERAAPKKSKT---QELSRP 110 (982)
T ss_pred CchhhhcccCCCCCCccccccccccccccccccccccccccccCccccccccccccccccccccccccCCc---ccCCCC
Confidence 4567888888876666665333333332 233444444 3555544444444433311111111111 233334
Q ss_pred hhhh-hhhccccccCCCCCcccCccCCCCC
Q 001486 696 DDVQ-REYEHESKKDLKPLSLEGLSLDPGG 724 (1070)
Q Consensus 696 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 724 (1070)
++-. .|+|+|-+.| |+|+=|+|--+
T Consensus 111 ~sps~~e~e~e~e~e----s~d~rs~nd~g 136 (982)
T PF03154_consen 111 NSPSESEGEGEGEGE----SSDGRSVNDDG 136 (982)
T ss_pred CCCccccccccCccc----ccccccccccC
Confidence 3322 4555555444 66777776555
No 343
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=80.48 E-value=2.1 Score=44.94 Aligned_cols=52 Identities=21% Similarity=0.447 Sum_probs=47.3
Q ss_pred HcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHH
Q 001486 301 KQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQI 352 (1070)
Q Consensus 301 ~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~ 352 (1070)
+.+|.+.+.++|.+|+...|....-|..++.+.++.|+++.|...|++.+++
T Consensus 7 ~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~l 58 (287)
T COG4976 7 ESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLEL 58 (287)
T ss_pred ccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcC
Confidence 4678888999999999999999999999999999999999999999998887
No 344
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=80.46 E-value=2.9 Score=27.91 Aligned_cols=30 Identities=17% Similarity=0.274 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhcC
Q 001486 75 YWRKYADHKARLCSIDKVVEVFERAVQSAT 104 (1070)
Q Consensus 75 lW~~ya~~e~~~~~~e~A~~lferAL~~~P 104 (1070)
.|..++..+...+++++|...|.++++..|
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 455555555555566666666666665544
No 345
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=80.18 E-value=21 Score=42.41 Aligned_cols=132 Identities=15% Similarity=0.095 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhhhchHHHHHHHHHHHH
Q 001486 291 NWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQ 370 (1070)
Q Consensus 291 ~W~~yi~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~ 370 (1070)
.-.+.+.|+++.|-++.|. ... .+++.-+.+| .+.|+++.|.++.+.. +.+..|-.+|..-..
T Consensus 297 ~~~~i~~fL~~~G~~e~AL-------~~~-~D~~~rFeLA---l~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL~ 359 (443)
T PF04053_consen 297 QGQSIARFLEKKGYPELAL-------QFV-TDPDHRFELA---LQLGNLDIALEIAKEL------DDPEKWKQLGDEALR 359 (443)
T ss_dssp HHHHHHHHHHHTT-HHHHH-------HHS-S-HHHHHHHH---HHCT-HHHHHHHCCCC------STHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHH-------hhc-CChHHHhHHH---HhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHH
Confidence 3566778888999555444 332 3345555544 4678888776655221 356799999999999
Q ss_pred hCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhcCCH
Q 001486 371 IGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSA 450 (1070)
Q Consensus 371 ~g~~~eA~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~g~~ 450 (1070)
.|+++-|.++|.++- + |-.+.-++...|+.+...++-+.|... . +.-+.+...+ ..|++
T Consensus 360 ~g~~~lAe~c~~k~~-----d----~~~L~lLy~~~g~~~~L~kl~~~a~~~-------~---~~n~af~~~~--~lgd~ 418 (443)
T PF04053_consen 360 QGNIELAEECYQKAK-----D----FSGLLLLYSSTGDREKLSKLAKIAEER-------G---DINIAFQAAL--LLGDV 418 (443)
T ss_dssp TTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT-------T----HHHHHHHHH--HHT-H
T ss_pred cCCHHHHHHHHHhhc-----C----ccccHHHHHHhCCHHHHHHHHHHHHHc-------c---CHHHHHHHHH--HcCCH
Confidence 999999999999874 2 223333455678888888887776654 1 1112222222 47888
Q ss_pred HHHHHHHHHH
Q 001486 451 DNARDILIDG 460 (1070)
Q Consensus 451 e~Ar~iyeka 460 (1070)
++..+++.++
T Consensus 419 ~~cv~lL~~~ 428 (443)
T PF04053_consen 419 EECVDLLIET 428 (443)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHc
Confidence 8887776543
No 346
>PRK10941 hypothetical protein; Provisional
Probab=80.11 E-value=17 Score=40.14 Aligned_cols=64 Identities=9% Similarity=-0.108 Sum_probs=56.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHH
Q 001486 400 ANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLL 470 (1070)
Q Consensus 400 a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~g~~e~Ar~iyekaL~~~P~~~~l 470 (1070)
-..+.+.++++.|..+.++.+.. .|.++.-|-.-|.++. ..|.+..|+.-|+..|+.+|+.+..
T Consensus 188 K~~~~~~~~~~~AL~~~e~ll~l------~P~dp~e~RDRGll~~-qL~c~~~A~~DL~~fl~~~P~dp~a 251 (269)
T PRK10941 188 KAALMEEKQMELALRASEALLQF------DPEDPYEIRDRGLIYA-QLDCEHVALSDLSYFVEQCPEDPIS 251 (269)
T ss_pred HHHHHHcCcHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHH-HcCCcHHHHHHHHHHHHhCCCchhH
Confidence 33556779999999999999998 7888999999999998 9999999999999999999998753
No 347
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=79.78 E-value=10 Score=43.72 Aligned_cols=129 Identities=12% Similarity=-0.038 Sum_probs=63.5
Q ss_pred hhCChhHHHHHHHHHHHHHhhhchHHHHHHHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHH
Q 001486 335 SKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACD 414 (1070)
Q Consensus 335 ~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~eA~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~ 414 (1070)
..|++-.|-.-+..+++. .+.+|..-...+.+.+..|.|+.|...+.-+-+.+..... ..--+..-...+|..+.|..
T Consensus 301 ~~gd~~aas~~~~~~lr~-~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~-~~~~~~r~~~~l~r~~~a~s 378 (831)
T PRK15180 301 ADGDIIAASQQLFAALRN-QQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDS-TLRCRLRSLHGLARWREALS 378 (831)
T ss_pred hccCHHHHHHHHHHHHHh-CCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCch-HHHHHHHhhhchhhHHHHHH
Confidence 345554444444344443 4556666666666767777777776665543211111111 11111112233455566655
Q ss_pred HHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHH
Q 001486 415 TYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLLLE 472 (1070)
Q Consensus 415 vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~g~~e~Ar~iyekaL~~~P~~~~lw~ 472 (1070)
.-+..+.. ...++++.--.|--. ...|.+|+|...|++.+.++|..-.=|.
T Consensus 379 ~a~~~l~~------eie~~ei~~iaa~sa-~~l~~~d~~~~~wk~~~~~~~~~~~g~v 429 (831)
T PRK15180 379 TAEMMLSN------EIEDEEVLTVAAGSA-DALQLFDKSYHYWKRVLLLNPETQSGWV 429 (831)
T ss_pred HHHHHhcc------ccCChhheeeecccH-HHHhHHHHHHHHHHHHhccCChhcccce
Confidence 55444433 234444432211111 2567777888888888777765443333
No 348
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=79.76 E-value=7.7 Score=43.53 Aligned_cols=85 Identities=16% Similarity=0.204 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhhhchHHHHHHHHHHHHhCCHHHHHHHHHHHhhccC--hhhHHHHHHHH
Q 001486 323 PEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSD--SRFIEKVTFKA 400 (1070)
Q Consensus 323 ~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~eA~~~~~~al~~~~--p~~~~~w~~~a 400 (1070)
..+|-.++.--+...-.+....+|..++.+....+| -++.+.++...++.+. ..++++|+-+|
T Consensus 83 ~sFw~tm~eEde~~~~t~kvn~tlsECl~Li~eGcp---------------~eei~~~L~~li~~IP~A~K~aKYWIC~A 147 (353)
T PF15297_consen 83 GSFWTTMAEEDEQRLFTEKVNKTLSECLNLIEEGCP---------------KEEILATLSDLIKNIPDAKKLAKYWICLA 147 (353)
T ss_pred cccccchhhhhhHHHHHHHHHHHHHHHHHHHHcCCC---------------HHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence 457776654222211123333455555554333333 2455556665553331 25688999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHH
Q 001486 401 NMERRLGNFVAACDTYKEALET 422 (1070)
Q Consensus 401 ~le~~~g~~~~A~~vyekal~~ 422 (1070)
.++.+.|.++.++.+|++|+..
T Consensus 148 rl~~~~~~~e~vi~iyEeAi~a 169 (353)
T PF15297_consen 148 RLEPRTGPIEDVIAIYEEAILA 169 (353)
T ss_pred HHHhhcCCHHHHHHHHHHHHHc
Confidence 9999999999999999999986
No 349
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=79.66 E-value=1.1e+02 Score=34.17 Aligned_cols=82 Identities=11% Similarity=-0.041 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhh--------------------hchH--HHH
Q 001486 305 FDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLK--------------------RLPV--IHL 362 (1070)
Q Consensus 305 ~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~--------------------~~p~--i~~ 362 (1070)
...-+..-..||..+|....+++.+|. +....+-+|..+|++|+++... .+.+ +|+
T Consensus 200 p~~RI~~A~~ALeIN~eCA~AyvLLAE--EEa~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~~rRDtnvl~YI 277 (556)
T KOG3807|consen 200 PPARIKAAYQALEINNECATAYVLLAE--EEATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQLRRDTNVLVYI 277 (556)
T ss_pred cHHHHHHHHHHHhcCchhhhHHHhhhh--hhhhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhhhhcccchhhHH
Confidence 344455566788889999988888875 3444578899999999885211 0111 222
Q ss_pred --HHHHHHHHhCCHHHHHHHHHHHhhcc
Q 001486 363 --FNARYKEQIGDTSAARAAFPESYIDS 388 (1070)
Q Consensus 363 --~~a~~e~~~g~~~eA~~~~~~al~~~ 388 (1070)
.+|..-.+.|+..+|.+.|+...++.
T Consensus 278 KRRLAMCARklGrlrEA~K~~RDL~ke~ 305 (556)
T KOG3807|consen 278 KRRLAMCARKLGRLREAVKIMRDLMKEF 305 (556)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhc
Confidence 23445567899999999888876544
No 350
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=78.75 E-value=13 Score=41.88 Aligned_cols=86 Identities=8% Similarity=0.147 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHcCCCCCchHHHHHHHH
Q 001486 74 GYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIE 153 (1070)
Q Consensus 74 ~lW~~ya~~e~~~~~~e~A~~lferAL~~~P~s~~lW~~y~~~~~~~~~~~~~ar~vferAL~~~p~~~~s~~lW~~yi~ 153 (1070)
.+|....+-.....-.+++..+|..||.+. ..- .-.+++..+++..++.+|.--....+|+..++
T Consensus 84 sFw~tm~eEde~~~~t~kvn~tlsECl~Li--------------~eG-cp~eei~~~L~~li~~IP~A~K~aKYWIC~Ar 148 (353)
T PF15297_consen 84 SFWTTMAEEDEQRLFTEKVNKTLSECLNLI--------------EEG-CPKEEILATLSDLIKNIPDAKKLAKYWICLAR 148 (353)
T ss_pred ccccchhhhhhHHHHHHHHHHHHHHHHHHH--------------HcC-CCHHHHHHHHHHHHhcCchHHHHHHHHHHHHH
Confidence 378877664333334466777777777652 111 34567788888888877765445689999999
Q ss_pred HHHHcccHHHHHHHHHHHHcc
Q 001486 154 FEISQQRWSSLAQIFVQTLRF 174 (1070)
Q Consensus 154 fe~~~~~~~~a~~iy~raL~~ 174 (1070)
++...|.++.++.||++|+..
T Consensus 149 l~~~~~~~e~vi~iyEeAi~a 169 (353)
T PF15297_consen 149 LEPRTGPIEDVIAIYEEAILA 169 (353)
T ss_pred HHhhcCCHHHHHHHHHHHHHc
Confidence 999999999999999999764
No 351
>KOG1972 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.12 E-value=25 Score=43.45 Aligned_cols=97 Identities=13% Similarity=0.049 Sum_probs=65.5
Q ss_pred cCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCCcc-------------------------------hhHHHHHHH
Q 001486 447 TGSADNARDILIDGIKHVPNCKLLLEELIKFTMVHGGRSH-------------------------------ISIVDAVIS 495 (1070)
Q Consensus 447 ~g~~e~Ar~iyekaL~~~P~~~~lw~~y~~~e~~~g~~~~-------------------------------~~~ar~l~e 495 (1070)
.+.+++-| +++.+|..++.+...|..|+.++...-...+ ....+..|.
T Consensus 743 f~~~~k~r-F~e~~v~~fsrn~~~~e~wa~l~s~l~qk~r~rl~~~k~~~~~~n~ai~~~~~i~e~~~~~i~~a~t~mf~ 821 (913)
T KOG1972|consen 743 FYNLPKVR-FFEEGVTLFSRNAFGWELWAELESELRQKIRKRLSSTKNEVDGRNAAIHAEQVIPETGDDQIMSANTGMFR 821 (913)
T ss_pred ccccccee-eeccchhhccccchhHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhccccccccchHHHHhHHHHHHHH
Confidence 45666777 7778899999999999999888665311000 011233343
Q ss_pred HHhccCCcccccCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCc
Q 001486 496 NALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQHIKLFPHTV 548 (1070)
Q Consensus 496 kAl~~~~~~s~~l~~~~~~~l~~~~~~~e~~~G~~~~a~~~~~ra~~~~p~~~ 548 (1070)
.+.... +...++ +...+|..|+++....++.+...+++.+|+..||=..
T Consensus 822 n~~~si--~d~~l~--~~~~~WR~yl~~lskl~~~~~~~~~~tkA~~sCpW~K 870 (913)
T KOG1972|consen 822 NADRSI--LDEELP--DENSKWRDYLEALSKLLNKERSKAASTKALDSCPWAK 870 (913)
T ss_pred HHHHhc--ccccCC--cchhHHHHHHHHHHHhhhhhhhHHHHHHHhhcCchHH
Confidence 333211 112333 2457999999999999999999999999999998743
No 352
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=77.25 E-value=17 Score=37.95 Aligned_cols=78 Identities=12% Similarity=-0.025 Sum_probs=58.0
Q ss_pred CHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhcCCHHH
Q 001486 373 DTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADN 452 (1070)
Q Consensus 373 ~~~eA~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~g~~e~ 452 (1070)
+-++|+..|.++-..-.-+.+++-+.+|.++.+ -|.++++.+|-+++++..++ ...+++++..+|.++. ..|+++.
T Consensus 121 ~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~k-rD~~Kt~~ll~~~L~l~~~~--~~~n~eil~sLas~~~-~~~~~e~ 196 (203)
T PF11207_consen 121 GDQEALRRFLQLEGTPELETAELQYALATYYTK-RDPEKTIQLLLRALELSNPD--DNFNPEILKSLASIYQ-KLKNYEQ 196 (203)
T ss_pred CcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhcCCC--CCCCHHHHHHHHHHHH-Hhcchhh
Confidence 346677777766322222567788888888875 58899999999999985433 2457899999999988 8899888
Q ss_pred HH
Q 001486 453 AR 454 (1070)
Q Consensus 453 Ar 454 (1070)
|.
T Consensus 197 AY 198 (203)
T PF11207_consen 197 AY 198 (203)
T ss_pred hh
Confidence 74
No 353
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=77.22 E-value=1.3e+02 Score=33.77 Aligned_cols=137 Identities=18% Similarity=0.131 Sum_probs=90.5
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhhhch-------
Q 001486 286 DIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLP------- 358 (1070)
Q Consensus 286 p~~~~~W~~yi~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p------- 358 (1070)
|-..+.-..|-+.+ ..++...+....|+.+..+|...++.+..+..+.+.| ++.+..++...+..|....|
T Consensus 97 ~p~ad~~~~~~~~~-~~~~~~~Ll~~~E~sl~~~pfWLDgq~~~~qal~~lG-~~~~a~aI~~el~~fL~RlP~L~~L~F 174 (301)
T TIGR03362 97 PPPADRVADYQELL-AQADWAALLQRVEQSLSLAPFWLDGQRLSAQALERLG-YAAVAQAIRDELAAFLERLPGLLELKF 174 (301)
T ss_pred CCCHHHHHHHHHHH-hCCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHhCcChhhccc
Confidence 33345555555554 4567788888999999888988888888889999998 57777777777776654333
Q ss_pred -----------HHHHHH----------------------------HHHHHHhCCHHHHHHHHHHHhhccCh--hhHHHHH
Q 001486 359 -----------VIHLFN----------------------------ARYKEQIGDTSAARAAFPESYIDSDS--RFIEKVT 397 (1070)
Q Consensus 359 -----------~i~~~~----------------------------a~~e~~~g~~~eA~~~~~~al~~~~p--~~~~~w~ 397 (1070)
..|+.- +.-+...+.+++|...++..+..... +-....+
T Consensus 175 ~DGtPFad~~T~~WL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~l~~~~gl~~Al~~L~~~~~~~~s~R~rf~~rL 254 (301)
T TIGR03362 175 SDGTPFADDETRAWLAQHATRSNAASVAPVAEVGEESDWEELREEARALAAEGGLEAALQRLQQRLAQAREPRERFHWRL 254 (301)
T ss_pred CCCCCCCCHHHHHHHHhcccccccccccccccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCCChHHHHHHHH
Confidence 245431 11123455677777777654322211 2233345
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 001486 398 FKANMERRLGNFVAACDTYKEALETAA 424 (1070)
Q Consensus 398 ~~a~le~~~g~~~~A~~vyekal~~~~ 424 (1070)
..+++....|..+-|..+|....+...
T Consensus 255 ~~A~l~~~~g~~~lA~~ll~~L~~~~~ 281 (301)
T TIGR03362 255 LLARLLEQAGKAELAQQLYAALDQQIQ 281 (301)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 567788888999999999998887753
No 354
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=76.97 E-value=30 Score=44.68 Aligned_cols=70 Identities=17% Similarity=0.153 Sum_probs=40.8
Q ss_pred CHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcH-HHHHHHHHHHHHcC
Q 001486 408 NFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCK-LLLEELIKFTMVHG 482 (1070)
Q Consensus 408 ~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~g~~e~Ar~iyekaL~~~P~~~-~lw~~y~~~e~~~g 482 (1070)
.+.+++++|..+... ........+|..||.+++ ..+.+.+|.++|..|++...... .+-..|..|..+.+
T Consensus 93 ~~~d~~d~f~~m~~k----gIg~~lalfYe~~a~~lE-~k~~~keA~~v~q~Giq~~aeP~~rL~~~~~~F~~r~~ 163 (974)
T KOG1166|consen 93 ELQDAEDFFSYLENK----GIGTTLALFYEAYAKHLE-RKEYFKEAKEVFQLGIQNKAEPLERLLRQYSNFQQRLM 163 (974)
T ss_pred HHhhHHHHHHHHHhc----cccchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Confidence 445566666555442 223445567777777776 77777777777777777644332 34444555544433
No 355
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=76.86 E-value=96 Score=33.62 Aligned_cols=47 Identities=6% Similarity=0.015 Sum_probs=25.9
Q ss_pred CCHHHHHHHHHHHhccCCCCHHH----HHHHHHHHHhhCChhHHHHHHHHH
Q 001486 303 GDFDWVVKLYERCLIPCADYPEF----WMRYVDFMESKGGREIASYALDRA 349 (1070)
Q Consensus 303 g~~~~a~~~yerAL~~~p~~~~l----W~~ya~~l~~~g~~e~A~~il~rA 349 (1070)
.++++|+.-|++.|...+...+. .-...+...+.|++++..+.|...
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~ql 91 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQL 91 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 36788888888888877655332 222333344444444444444333
No 356
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.05 E-value=31 Score=42.66 Aligned_cols=55 Identities=7% Similarity=0.082 Sum_probs=29.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHhccCCC--CHHHHHHHHHHHHhhCChhHHHHHHHHHH
Q 001486 296 LSFAEKQGDFDWVVKLYERCLIPCAD--YPEFWMRYVDFMESKGGREIASYALDRAT 350 (1070)
Q Consensus 296 i~~~~~~g~~~~a~~~yerAL~~~p~--~~~lW~~ya~~l~~~g~~e~A~~il~rAl 350 (1070)
++|+.+.+.+++|.++-+......+. -.++|..|..-|.-.|++++|...+-+.+
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~ 419 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKML 419 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHh
Confidence 44555555555555555544443333 34566666666666666666555444433
No 357
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=75.91 E-value=28 Score=38.63 Aligned_cols=99 Identities=18% Similarity=0.174 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhh---hc------hHHHHHHHHHHHHhCCHHHHHHHHHHHhhccC-hhh
Q 001486 323 PEFWMRYVDFMESKGGREIASYALDRATQIFLK---RL------PVIHLFNARYKEQIGDTSAARAAFPESYIDSD-SRF 392 (1070)
Q Consensus 323 ~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~---~~------p~i~~~~a~~e~~~g~~~eA~~~~~~al~~~~-p~~ 392 (1070)
.++|...|.||.+.|+.+.|.+.+++..+.... +. -.+.++|+....-...+++|..+++++- .-+ .+-
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~Gg-DWeRrNR 182 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGG-DWERRNR 182 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCC-Chhhhhh
Confidence 367788888888888877776666555442110 00 0233334444445566778888888764 221 123
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 001486 393 IEKVTFKANMERRLGNFVAACDTYKEALETAA 424 (1070)
Q Consensus 393 ~~~w~~~a~le~~~g~~~~A~~vyekal~~~~ 424 (1070)
+++|...-.+ ...+|.+|..+|-.++..|.
T Consensus 183 lKvY~Gly~m--svR~Fk~Aa~Lfld~vsTFt 212 (393)
T KOG0687|consen 183 LKVYQGLYCM--SVRNFKEAADLFLDSVSTFT 212 (393)
T ss_pred HHHHHHHHHH--HHHhHHHHHHHHHHHccccc
Confidence 4444333222 23477888888877777653
No 358
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.25 E-value=42 Score=40.28 Aligned_cols=45 Identities=18% Similarity=0.014 Sum_probs=24.2
Q ss_pred hhCChhHHHHHHHHHHHHHhhhchHHHHHHHHHHHHhCCHHHHHHHHHHHh
Q 001486 335 SKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESY 385 (1070)
Q Consensus 335 ~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~eA~~~~~~al 385 (1070)
+.|+++.|..+..++- .+.=|-.++++-...+++..|.++|.++.
T Consensus 649 ~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~ 693 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRAR 693 (794)
T ss_pred hcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhc
Confidence 4455555544443322 23445556666666666666666666654
No 359
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=74.50 E-value=1.1e+02 Score=34.33 Aligned_cols=54 Identities=9% Similarity=0.029 Sum_probs=35.7
Q ss_pred CCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhh---CCCcHHHHHHHHHHHHHcCCC
Q 001486 430 HTLPLLYVQFSRLTYTTTGSADNARDILIDGIKH---VPNCKLLLEELIKFTMVHGGR 484 (1070)
Q Consensus 430 ~~~~~l~i~~A~~~~~~~g~~e~Ar~iyekaL~~---~P~~~~lw~~y~~~e~~~g~~ 484 (1070)
..-.+++++.|.++. ..||.+.|.+.|.+..++ .+.-.++....+++-.-.+|.
T Consensus 101 ~ev~ea~~~kaeYyc-qigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~ 157 (393)
T KOG0687|consen 101 SEVREAMLRKAEYYC-QIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDH 157 (393)
T ss_pred HHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccH
Confidence 344577888888877 888888888877777664 233446666666655555543
No 360
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=73.79 E-value=1.5e+02 Score=32.79 Aligned_cols=47 Identities=13% Similarity=0.094 Sum_probs=40.7
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCCcch
Q 001486 440 SRLTYTTTGSADNARDILIDGIKHVPNCKLLLEELIKFTMVHGGRSHI 487 (1070)
Q Consensus 440 A~~~~~~~g~~e~Ar~iyekaL~~~P~~~~lw~~y~~~e~~~g~~~~~ 487 (1070)
|..+. .+|.+.+|..+-.+++..+|-+...|..+...+...||...+
T Consensus 286 a~~yl-e~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~ 332 (361)
T COG3947 286 ARAYL-EAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISA 332 (361)
T ss_pred HHHHH-HcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhh
Confidence 44444 899999999999999999999999999999999999986543
No 361
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=73.66 E-value=1.5e+02 Score=32.77 Aligned_cols=150 Identities=11% Similarity=-0.083 Sum_probs=90.7
Q ss_pred CCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhC----ChhHHHHHHHHHHHHHhhhchHHHHHHHHHHHH----hCCH
Q 001486 303 GDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKG----GREIASYALDRATQIFLKRLPVIHLFNARYKEQ----IGDT 374 (1070)
Q Consensus 303 g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g----~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~----~g~~ 374 (1070)
+++..+...|+++-.. .....-..++..+.... +...|...|..+... ..+..-+.++.++.. ..+.
T Consensus 55 ~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~---g~~~a~~~lg~~~~~G~gv~~d~ 129 (292)
T COG0790 55 PDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAAD---GLAEALFNLGLMYANGRGVPLDL 129 (292)
T ss_pred ccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhc---ccHHHHHhHHHHHhcCCCcccCH
Confidence 3455666666665541 11133334444343322 357788888766543 455566667776654 3378
Q ss_pred HHHHHHHHHHhhccChhhHHHHHHHHHHHHHc----C---CHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhh-
Q 001486 375 SAARAAFPESYIDSDSRFIEKVTFKANMERRL----G---NFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTT- 446 (1070)
Q Consensus 375 ~eA~~~~~~al~~~~p~~~~~w~~~a~le~~~----g---~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~- 446 (1070)
.+|...|.++.+.-.+.-...-+.++.++..- + +...|+..|.+|... ..+.....+|.++..-
T Consensus 130 ~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~--------~~~~a~~~lg~~y~~G~ 201 (292)
T COG0790 130 VKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAEL--------GNPDAQLLLGRMYEKGL 201 (292)
T ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHh--------cCHHHHHHHHHHHHcCC
Confidence 89999999987432222111133344433321 1 334789999998886 2567778888877632
Q ss_pred --cCCHHHHHHHHHHHHhhCC
Q 001486 447 --TGSADNARDILIDGIKHVP 465 (1070)
Q Consensus 447 --~g~~e~Ar~iyekaL~~~P 465 (1070)
..++.+|+..|.++.+.-.
T Consensus 202 Gv~~d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 202 GVPRDLKKAFRWYKKAAEQGD 222 (292)
T ss_pred CCCcCHHHHHHHHHHHHHCCC
Confidence 3488999999999998766
No 362
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=73.17 E-value=15 Score=38.17 Aligned_cols=79 Identities=15% Similarity=-0.003 Sum_probs=37.4
Q ss_pred HHhhCChhHHHHHHHHHHHHHhhhchHHHHHHHHHHHHhCCHHHHHHHHHHHhhccChh---hHHHHHHHHHHHHHcCCH
Q 001486 333 MESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSR---FIEKVTFKANMERRLGNF 409 (1070)
Q Consensus 333 l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~eA~~~~~~al~~~~p~---~~~~w~~~a~le~~~g~~ 409 (1070)
+|...+-+.|+..|-++-....=+.+.+.+.+|.|+. ..+.++|+.+|-++++...++ +++++..++.++...|++
T Consensus 116 ~Wsr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 116 HWSRFGDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred HhhccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 4444334455554433322100123445555555544 334556666666665322222 345555666666666665
Q ss_pred HHH
Q 001486 410 VAA 412 (1070)
Q Consensus 410 ~~A 412 (1070)
+.|
T Consensus 195 e~A 197 (203)
T PF11207_consen 195 EQA 197 (203)
T ss_pred hhh
Confidence 554
No 363
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=72.90 E-value=1.5e+02 Score=32.54 Aligned_cols=103 Identities=15% Similarity=-0.057 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHhhccCh--hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHH--
Q 001486 359 VIHLFNARYKEQIGDTSAARAAFPESYIDSDS--RFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPL-- 434 (1070)
Q Consensus 359 ~i~~~~a~~e~~~g~~~eA~~~~~~al~~~~p--~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~-- 434 (1070)
.+|...|+++...++.+.+.+.+.+.++..-. --+++++..+.+-.-.|+..-..+.++.+-..+. ...+|+
T Consensus 116 ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iE----kGgDWeRr 191 (412)
T COG5187 116 EADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIE----KGGDWERR 191 (412)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHH----hCCCHHhh
Confidence 57777777777777777766665555421100 1123333333322222332222222222111110 122221
Q ss_pred --HHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCC
Q 001486 435 --LYVQFSRLTYTTTGSADNARDILIDGIKHVPN 466 (1070)
Q Consensus 435 --l~i~~A~~~~~~~g~~e~Ar~iyekaL~~~P~ 466 (1070)
+-..+|.+.. ...++.+|-.++-..+..+..
T Consensus 192 NRyK~Y~Gi~~m-~~RnFkeAa~Ll~d~l~tF~S 224 (412)
T COG5187 192 NRYKVYKGIFKM-MRRNFKEAAILLSDILPTFES 224 (412)
T ss_pred hhHHHHHHHHHH-HHHhhHHHHHHHHHHhccccc
Confidence 2233344444 567788888888877766554
No 364
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=72.71 E-value=1.6e+02 Score=32.60 Aligned_cols=148 Identities=11% Similarity=-0.043 Sum_probs=87.6
Q ss_pred CChhHHHHHHHHHHHHHhhhchHHHHHHHHHH----HHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHH----cCC
Q 001486 337 GGREIASYALDRATQIFLKRLPVIHLFNARYK----EQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERR----LGN 408 (1070)
Q Consensus 337 g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e----~~~g~~~eA~~~~~~al~~~~p~~~~~w~~~a~le~~----~g~ 408 (1070)
+.+..|...+.++... ..+......+.++ ....+..+|...|..+. ..+.......++.++.. ..+
T Consensus 55 ~~~~~a~~~~~~a~~~---~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a---~~g~~~a~~~lg~~~~~G~gv~~d 128 (292)
T COG0790 55 PDYAKALKSYEKAAEL---GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAA---ADGLAEALFNLGLMYANGRGVPLD 128 (292)
T ss_pred ccHHHHHHHHHHhhhc---CChHHHHHHHHHHHhccCccccHHHHHHHHHHHh---hcccHHHHHhHHHHHhcCCCcccC
Confidence 3455666666666542 1122222223322 22446788999998765 23455566667777665 238
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCc-HHHHHHHHHHHHhhcC--------CHHHHHHHHHHHHhhCCCcHHHHHHHH-HHH
Q 001486 409 FVAACDTYKEALETAAEQRKFHTL-PLLYVQFSRLTYTTTG--------SADNARDILIDGIKHVPNCKLLLEELI-KFT 478 (1070)
Q Consensus 409 ~~~A~~vyekal~~~~~~~~~~~~-~~l~i~~A~~~~~~~g--------~~e~Ar~iyekaL~~~P~~~~lw~~y~-~~e 478 (1070)
..+|...|++|.+. .... ......++.++. .| +...|+..|.++-...-... ...+. -++
T Consensus 129 ~~~A~~~~~~Aa~~------g~~~a~~~~~~l~~~~~--~g~~~~~~~~~~~~A~~~~~~aa~~~~~~a--~~~lg~~y~ 198 (292)
T COG0790 129 LVKALKYYEKAAKL------GNVEAALAMYRLGLAYL--SGLQALAVAYDDKKALYLYRKAAELGNPDA--QLLLGRMYE 198 (292)
T ss_pred HHHHHHHHHHHHHc------CChhHHHHHHHHHHHHH--cChhhhcccHHHHhHHHHHHHHHHhcCHHH--HHHHHHHHH
Confidence 89999999999987 2222 233666677665 33 34479999999887663222 12222 222
Q ss_pred HHcCCCcchhHHHHHHHHHhcc
Q 001486 479 MVHGGRSHISIVDAVISNALYS 500 (1070)
Q Consensus 479 ~~~g~~~~~~~ar~l~ekAl~~ 500 (1070)
...|-..+.+.+...|.+|...
T Consensus 199 ~G~Gv~~d~~~A~~wy~~Aa~~ 220 (292)
T COG0790 199 KGLGVPRDLKKAFRWYKKAAEQ 220 (292)
T ss_pred cCCCCCcCHHHHHHHHHHHHHC
Confidence 2245555667788899999863
No 365
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.68 E-value=1e+02 Score=37.03 Aligned_cols=100 Identities=17% Similarity=0.150 Sum_probs=64.1
Q ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-------cc--------------CCCCHHH---HHHHHHHHHhhCCh
Q 001486 284 LDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCL-------IP--------------CADYPEF---WMRYVDFMESKGGR 339 (1070)
Q Consensus 284 ~~p~~~~~W~~yi~~~~~~g~~~~a~~~yerAL-------~~--------------~p~~~~l---W~~ya~~l~~~g~~ 339 (1070)
-+|..++..+..+++...+||.+.+.++.+||| .. .|.+..+ .+.|...+.+.|-+
T Consensus 279 ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~ 358 (665)
T KOG2422|consen 279 SSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCW 358 (665)
T ss_pred cCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCCh
Confidence 468888999999999988998765555555555 32 1333333 34566677788888
Q ss_pred hHHHHHHHHHHHHHhhh-chH-HHHHHHHHHHHhCCHHHHHHHHHHH
Q 001486 340 EIASYALDRATQIFLKR-LPV-IHLFNARYKEQIGDTSAARAAFPES 384 (1070)
Q Consensus 340 e~A~~il~rAl~~~~~~-~p~-i~~~~a~~e~~~g~~~eA~~~~~~a 384 (1070)
..|.+.++-.+.+ .+. +|- +.+..-.|-.+..+|.=.+.++...
T Consensus 359 rTA~E~cKlllsL-dp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~ 404 (665)
T KOG2422|consen 359 RTALEWCKLLLSL-DPSEDPLGILYLIDIYALRAREYQWIIELSNEP 404 (665)
T ss_pred HHHHHHHHHHhhc-CCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 9999888666665 554 673 3333333445666666666666554
No 366
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=71.75 E-value=7.7 Score=28.58 Aligned_cols=29 Identities=10% Similarity=0.164 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHhh
Q 001486 434 LLYVQFSRLTYTTTGSADNARDILIDGIKH 463 (1070)
Q Consensus 434 ~l~i~~A~~~~~~~g~~e~Ar~iyekaL~~ 463 (1070)
..+.++|.++. ..|++++|..+++++++.
T Consensus 3 ~~~~~la~~~~-~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYR-AQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHH-HCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-hhhhcchhhHHHHHHHHH
Confidence 46778899988 899999999999999874
No 367
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=71.33 E-value=29 Score=34.34 Aligned_cols=49 Identities=16% Similarity=0.142 Sum_probs=41.4
Q ss_pred hCChhHHHHHHHHHHHHHhhhchHHHHHHHHHHHHhCCHHHHHHHHHHHh
Q 001486 336 KGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESY 385 (1070)
Q Consensus 336 ~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~eA~~~~~~al 385 (1070)
.++++++..++ -|+.++.|+.+.+.++-+.+....|++++|..+|++..
T Consensus 23 ~~d~~D~e~lL-dALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~ 71 (153)
T TIGR02561 23 SADPYDAQAML-DALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELL 71 (153)
T ss_pred cCCHHHHHHHH-HHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhh
Confidence 67788888888 45556688888999999999999999999999999876
No 368
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=69.98 E-value=10 Score=27.85 Aligned_cols=30 Identities=30% Similarity=0.315 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 001486 394 EKVTFKANMERRLGNFVAACDTYKEALETA 423 (1070)
Q Consensus 394 ~~w~~~a~le~~~g~~~~A~~vyekal~~~ 423 (1070)
..+..++.++...|++++|+.+++++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 456778888888999999999999998874
No 369
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=69.53 E-value=24 Score=28.43 Aligned_cols=30 Identities=17% Similarity=0.142 Sum_probs=23.5
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHhhCCCcHHH
Q 001486 440 SRLTYTTTGSADNARDILIDGIKHVPNCKLL 470 (1070)
Q Consensus 440 A~~~~~~~g~~e~Ar~iyekaL~~~P~~~~l 470 (1070)
|...+ +.|++++|+...+.+|+..|++...
T Consensus 8 Aig~y-kl~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 8 AIGHY-KLGEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHH-HTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred HHHHH-HhhhHHHHHHHHHHHHhhCCCcHHH
Confidence 33344 8999999999999999999998763
No 370
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=69.47 E-value=3.2e+02 Score=34.84 Aligned_cols=232 Identities=12% Similarity=-0.018 Sum_probs=122.8
Q ss_pred HcCCHHHHHHHHHHHhccCCC-----CHHH---HHH-HHHHHHhhCChhHHHHHHHHHHHHHhhhch----HHHHHHHHH
Q 001486 301 KQGDFDWVVKLYERCLIPCAD-----YPEF---WMR-YVDFMESKGGREIASYALDRATQIFLKRLP----VIHLFNARY 367 (1070)
Q Consensus 301 ~~g~~~~a~~~yerAL~~~p~-----~~~l---W~~-ya~~l~~~g~~e~A~~il~rAl~~~~~~~p----~i~~~~a~~ 367 (1070)
....+++|..+..++-...+. ..++ |.. .|.+....|++++|..+.++++......-. .+....+..
T Consensus 427 s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a 506 (894)
T COG2909 427 SQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEA 506 (894)
T ss_pred HccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHH
Confidence 456777777777666543222 1222 332 355667788999999999999986322111 234445556
Q ss_pred HHHhCCHHHHHHHHHHHhh---ccChhhHHHHHHHHH--HHHHcCC--HHHHHHHHHHHHHHHHhhccCCCc---HHHHH
Q 001486 368 KEQIGDTSAARAAFPESYI---DSDSRFIEKVTFKAN--MERRLGN--FVAACDTYKEALETAAEQRKFHTL---PLLYV 437 (1070)
Q Consensus 368 e~~~g~~~eA~~~~~~al~---~~~p~~~~~w~~~a~--le~~~g~--~~~A~~vyekal~~~~~~~~~~~~---~~l~i 437 (1070)
..-.|++++|+.+...+.+ ..+..+..+|..+.. +....|. +......|...-..+... .+.. ..++.
T Consensus 507 ~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q--~~~~~f~~~~r~ 584 (894)
T COG2909 507 AHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQ--KPRHEFLVRIRA 584 (894)
T ss_pred HHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhh--cccchhHHHHHH
Confidence 6778999999999887752 235566777877643 4455672 222223332222221111 1211 12222
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHH---HHHHHHHHcCCCcchhHHHHHHHHHhccCCcccccCChhhHH
Q 001486 438 QFSRLTYTTTGSADNARDILIDGIKHVPNCKLLLE---ELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVE 514 (1070)
Q Consensus 438 ~~A~~~~~~~g~~e~Ar~iyekaL~~~P~~~~lw~---~y~~~e~~~g~~~~~~~ar~l~ekAl~~~~~~s~~l~~~~~~ 514 (1070)
..........+...+||.-++-+....|.....|. .+++++...|+.+++. ..+++...--.. ..-......
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~---~~l~~~~~l~~~--~~~~~~~~a 659 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKAL---AQLDELERLLLN--GQYHVDYLA 659 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHH---HHHHHHHHHhcC--CCCCchHHH
Confidence 22222222345566777777777777776665554 4567777788877653 333332211000 011123333
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHH
Q 001486 515 DISSLYLQFLDLCGTIHDIRNAWNQ 539 (1070)
Q Consensus 515 ~l~~~~~~~e~~~G~~~~a~~~~~r 539 (1070)
.+...-+.+=..-|+.+.+.....+
T Consensus 660 ~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 660 AAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHHhhHHHhcccCCHHHHHHHHHh
Confidence 3333333333456777666555544
No 371
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.10 E-value=2.7e+02 Score=33.44 Aligned_cols=69 Identities=19% Similarity=0.327 Sum_probs=50.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-ccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhC
Q 001486 396 VTFKANMERRLGNFVAACDTYKEALETAAEQ-RKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHV 464 (1070)
Q Consensus 396 w~~~a~le~~~g~~~~A~~vyekal~~~~~~-~~~~~~~~l~i~~A~~~~~~~g~~e~Ar~iyekaL~~~ 464 (1070)
++..+-+.+.+|+-..|..+|..+++..... .+....|-++..+|.+++...|.+.+|++.+.+|=...
T Consensus 452 ~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~ 521 (546)
T KOG3783|consen 452 YLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYA 521 (546)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhc
Confidence 4455778899999999999999998653222 22334667888999999844445999999999985443
No 372
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=67.21 E-value=2e+02 Score=31.62 Aligned_cols=125 Identities=12% Similarity=0.011 Sum_probs=74.1
Q ss_pred CChhHHHHHHHHHHHHHhhhc-----hHHHHHHHHHHHHhCCHHHHHHHHHHHhhcc-----ChhhHHHHHHHHHHHHHc
Q 001486 337 GGREIASYALDRATQIFLKRL-----PVIHLFNARYKEQIGDTSAARAAFPESYIDS-----DSRFIEKVTFKANMERRL 406 (1070)
Q Consensus 337 g~~e~A~~il~rAl~~~~~~~-----p~i~~~~a~~e~~~g~~~eA~~~~~~al~~~-----~p~~~~~w~~~a~le~~~ 406 (1070)
+.++.-+.++...++--.+.. -.+-+..+.++...|.|.+|+.+..-.+.++ .+....++..-...+...
T Consensus 99 dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~i 178 (421)
T COG5159 99 DSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEI 178 (421)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHH
Confidence 345666666666665321111 1344455566788999999998877665433 234455555555666666
Q ss_pred CCHHHHHHHHHHHHHHHHhhccCCCcHHHH----HHHHHHHHhhcCCHHHHHHHHHHHHhhCC
Q 001486 407 GNFVAACDTYKEALETAAEQRKFHTLPLLY----VQFSRLTYTTTGSADNARDILIDGIKHVP 465 (1070)
Q Consensus 407 g~~~~A~~vyekal~~~~~~~~~~~~~~l~----i~~A~~~~~~~g~~e~Ar~iyekaL~~~P 465 (1070)
.++.++++.+..|......- .+-+.+- +.-|-+.. ...++..|..+|-.+++-+-
T Consensus 179 rnv~KskaSLTaArt~Ans~---YCPpqlqa~lDL~sGIlhc-dd~dyktA~SYF~Ea~Egft 237 (421)
T COG5159 179 RNVSKSKASLTAARTLANSA---YCPPQLQAQLDLLSGILHC-DDRDYKTASSYFIEALEGFT 237 (421)
T ss_pred HhhhhhhhHHHHHHHHhhcc---CCCHHHHHHHHHhccceee-ccccchhHHHHHHHHHhccc
Confidence 77888888777776653221 1222222 22222222 56789999999999998654
No 373
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=66.43 E-value=31 Score=33.60 Aligned_cols=14 Identities=7% Similarity=0.382 Sum_probs=10.0
Q ss_pred chHHHHHHHHHHHH
Q 001486 144 CHTMWDKYIEFEIS 157 (1070)
Q Consensus 144 s~~lW~~yi~fe~~ 157 (1070)
...+|...+.+...
T Consensus 124 ~~~lw~~~~~~~l~ 137 (140)
T smart00299 124 NPELWAEVLKALLD 137 (140)
T ss_pred CHHHHHHHHHHHHc
Confidence 45788888877653
No 374
>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996. This model describes an abundant paralogous domain of Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. The domain also occurs, although rarely, in Myxococcus xanthus DK 1622 and related species. Most member proteins have extensive repeats similar to the leucine-rich repeat, or another repeat class or region of low-complexity sequence. This domain is not repeated, and in Gemmata is usually found at the protein N-terminus.
Probab=66.26 E-value=10 Score=28.68 Aligned_cols=33 Identities=18% Similarity=0.326 Sum_probs=26.7
Q ss_pred HHHHHHhccCCCCHHHHHHHHHHHHhhCChhHH
Q 001486 310 KLYERCLIPCADYPEFWMRYVDFMESKGGREIA 342 (1070)
Q Consensus 310 ~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A 342 (1070)
..|.+||...|.....|+.||.++...|+.+.|
T Consensus 3 ~all~AI~~~P~ddt~RLvYADWL~e~gdp~ra 35 (42)
T TIGR02996 3 EALLRAILAHPDDDTPRLVYADWLDEHGDPARA 35 (42)
T ss_pred HHHHHHHHhCCCCcchHHHHHHHHHHcCCHHHH
Confidence 357788888899999999999999988876544
No 375
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=66.19 E-value=1.2e+02 Score=39.40 Aligned_cols=118 Identities=12% Similarity=0.265 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHh----CC-HHHHHHHHHHHHHhc------CCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHcCCC
Q 001486 73 YGYWRKYADHKARL----CS-IDKVVEVFERAVQSA------TYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKD 141 (1070)
Q Consensus 73 ~~lW~~ya~~e~~~----~~-~e~A~~lferAL~~~------P~s~~lW~~y~~~~~~~~~~~~~ar~vferAL~~~p~~ 141 (1070)
...|..|+.+.... +. ...++.+++||+... ..++.+-..|+.+... ....+++.+|+..... |+-
T Consensus 34 l~~w~ryi~wv~~~~~~~~~~~~~l~~~lerc~~~~~~lk~Y~nD~Rfl~~~~~~~~~--e~~~d~~d~f~~m~~k-gIg 110 (974)
T KOG1166|consen 34 LDKWLRYIEWVLEVYPEGKENQSLLRNLLERCLEELEDLKRYRNDPRFLILWCSLELR--EELQDAEDFFSYLENK-GIG 110 (974)
T ss_pred hhhhHhHhhhhhhccccCCchhhhHHHHHHHHHHhccchhhccccHHHHHHHHhHHHH--HHHhhHHHHHHHHHhc-ccc
Confidence 45688888875432 23 566777888877653 3334433333321111 3457788888877653 332
Q ss_pred CCchHHHHHHHHHHHHcccHHHHHHHHHHHHccCCcCHHHHHHHHHHHHHHH
Q 001486 142 YLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAGAW 193 (1070)
Q Consensus 142 ~~s~~lW~~yi~fe~~~~~~~~a~~iy~raL~~p~~~~~~~~~~~~~~~~~~ 193 (1070)
..+.-++..|..+++..+.+.+|..+|+..+..--.....+-..+..|...+
T Consensus 111 ~~lalfYe~~a~~lE~k~~~keA~~v~q~Giq~~aeP~~rL~~~~~~F~~r~ 162 (974)
T KOG1166|consen 111 TTLALFYEAYAKHLERKEYFKEAKEVFQLGIQNKAEPLERLLRQYSNFQQRL 162 (974)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Confidence 3356788888888888889999999999998532233344444444444443
No 376
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=65.69 E-value=79 Score=41.62 Aligned_cols=128 Identities=16% Similarity=0.115 Sum_probs=90.9
Q ss_pred hhCChhHHHH------HHHHHHHHHhhhchHHHHHHHHHHHHhCCHHHHHHHHHHHhh-------ccChhhHHHHHHHHH
Q 001486 335 SKGGREIASY------ALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYI-------DSDSRFIEKVTFKAN 401 (1070)
Q Consensus 335 ~~g~~e~A~~------il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~eA~~~~~~al~-------~~~p~~~~~w~~~a~ 401 (1070)
..|.+.+|++ ++.+-..+..+.....+...+.++.+.++.++|...-.++.- .-.++....+...+.
T Consensus 944 ~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal 1023 (1236)
T KOG1839|consen 944 LEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLAL 1023 (1236)
T ss_pred cccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHH
Confidence 3455666666 333333333345567888889999999999999887766631 113455666777777
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHH--hhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhh
Q 001486 402 MERRLGNFVAACDTYKEALETAA--EQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKH 463 (1070)
Q Consensus 402 le~~~g~~~~A~~vyekal~~~~--~~~~~~~~~~l~i~~A~~~~~~~g~~e~Ar~iyekaL~~ 463 (1070)
++...++...|...+.+++.+.. ..++.|....+..+.+.++. ..++++.|.++.+.|++.
T Consensus 1024 ~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~-~v~e~d~al~~le~A~a~ 1086 (1236)
T KOG1839|consen 1024 YEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLL-GVEEADTALRYLESALAK 1086 (1236)
T ss_pred HHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHh-hHHHHHHHHHHHHHHHHH
Confidence 88888888999999999888743 12235566667778887776 778999999999999984
No 377
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=65.23 E-value=53 Score=37.85 Aligned_cols=93 Identities=17% Similarity=0.268 Sum_probs=63.8
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHh-cC-----C----CcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhC--CHHHHHH
Q 001486 27 EEFIAEGSLDFDEWTSLLSEIEN-SC-----P----DDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLC--SIDKVVE 94 (1070)
Q Consensus 27 e~~l~~nP~s~~~W~~li~~~~~-~~-----~----~~~~~a~~vyeraL~~~P~s~~lW~~ya~~e~~~~--~~e~A~~ 94 (1070)
.+.+..||.-+..|.--=..+.. .. + .-+++-..+.+.+|+.+|+++..|....-...+.. ++..=..
T Consensus 53 ~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~ 132 (421)
T KOG0529|consen 53 SELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQ 132 (421)
T ss_pred HHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHH
Confidence 45677889888888542222111 00 0 12334456778888899999999988887776654 4677788
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhh
Q 001486 95 VFERAVQSATYSVDVWFHYCSLSMST 120 (1070)
Q Consensus 95 lferAL~~~P~s~~lW~~y~~~~~~~ 120 (1070)
+.+++|+.+|.+...| .|-+|++..
T Consensus 133 lcek~L~~D~RNfh~W-~YRRfV~~~ 157 (421)
T KOG0529|consen 133 LCEKALKQDPRNFHAW-HYRRFVVEQ 157 (421)
T ss_pred HHHHHHhcCcccccch-HHHHHHHHH
Confidence 8899999988888888 577777655
No 378
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=65.20 E-value=2.7e+02 Score=32.32 Aligned_cols=102 Identities=9% Similarity=-0.093 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhhccC--hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--hccCCCcHHH
Q 001486 360 IHLFNARYKEQIGDTSAARAAFPESYIDSD--SRFIEKVTFKANMERRLGNFVAACDTYKEALETAAE--QRKFHTLPLL 435 (1070)
Q Consensus 360 i~~~~a~~e~~~g~~~eA~~~~~~al~~~~--p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~--~~~~~~~~~l 435 (1070)
.+.-++.++...|+++.|.+.|.|+...|- ...+..|++++.+-...|++......-.+|...... .......+++
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl 231 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKL 231 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcch
Confidence 455567788889999999999999875442 255778999988888889998888888887765200 0001122334
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHh
Q 001486 436 YVQFSRLTYTTTGSADNARDILIDGIK 462 (1070)
Q Consensus 436 ~i~~A~~~~~~~g~~e~Ar~iyekaL~ 462 (1070)
....|.... ..++++.|.+.|-.+..
T Consensus 232 ~C~agLa~L-~lkkyk~aa~~fL~~~~ 257 (466)
T KOG0686|consen 232 KCAAGLANL-LLKKYKSAAKYFLLAEF 257 (466)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHhCCC
Confidence 444444444 55688888887765543
No 379
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=64.56 E-value=2.3e+02 Score=31.25 Aligned_cols=159 Identities=12% Similarity=0.098 Sum_probs=92.2
Q ss_pred HcCCHHHHHHHHHHHhccC--------CCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHH---Hh-hhchH-HHHHHHHH
Q 001486 301 KQGDFDWVVKLYERCLIPC--------ADYPEFWMRYVDFMESKGGREIASYALDRATQI---FL-KRLPV-IHLFNARY 367 (1070)
Q Consensus 301 ~~g~~~~a~~~yerAL~~~--------p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~---~~-~~~p~-i~~~~a~~ 367 (1070)
+..++++++..|.+.|..- -.-+..-++++++|...|++...+......... |. ++... +.-..-.|
T Consensus 15 ~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~KiirtLiekf 94 (421)
T COG5159 15 KSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRTLIEKF 94 (421)
T ss_pred hhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHHHHHhc
Confidence 3456778888888887541 112345677888888888765544433322222 10 01111 12122223
Q ss_pred HHHhCCHHHHHHHHHHHhhccC---hhhH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHH
Q 001486 368 KEQIGDTSAARAAFPESYIDSD---SRFI--EKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRL 442 (1070)
Q Consensus 368 e~~~g~~~eA~~~~~~al~~~~---p~~~--~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~ 442 (1070)
......++.-+.++...++-.+ ..++ .+-++++.++...|.+.+|.++..-.+..++.-.+.+....+++.=..+
T Consensus 95 ~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKv 174 (421)
T COG5159 95 PYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKV 174 (421)
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHH
Confidence 3334455555555554442111 1111 2234566667778999999999998888877666677777777777777
Q ss_pred HHhhcCCHHHHHHHHHHH
Q 001486 443 TYTTTGSADNARDILIDG 460 (1070)
Q Consensus 443 ~~~~~g~~e~Ar~iyeka 460 (1070)
+. ...++.+++.-+.-|
T Consensus 175 yh-~irnv~KskaSLTaA 191 (421)
T COG5159 175 YH-EIRNVSKSKASLTAA 191 (421)
T ss_pred HH-HHHhhhhhhhHHHHH
Confidence 76 777777777666544
No 380
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=64.32 E-value=22 Score=45.93 Aligned_cols=103 Identities=9% Similarity=-0.012 Sum_probs=0.0
Q ss_pred HHHHHhCCHHHHHHHHHHHhhcc---ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHH
Q 001486 366 RYKEQIGDTSAARAAFPESYIDS---DSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRL 442 (1070)
Q Consensus 366 ~~e~~~g~~~eA~~~~~~al~~~---~p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~ 442 (1070)
......+.|+.|+..|+|....+ ..+....+..-+.+.++......- ..|..||..+..-.+.+..|--|+..|.+
T Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (932)
T PRK13184 483 DAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDP-RDFTQALSEFSYLHGGVGAPLEYLGKALV 561 (932)
T ss_pred HHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCCh-HHHHHHHHHHHHhcCCCCCchHHHhHHHH
Q ss_pred HHhhcCCHHHHHHHHHHHHhhCCCcHHH
Q 001486 443 TYTTTGSADNARDILIDGIKHVPNCKLL 470 (1070)
Q Consensus 443 ~~~~~g~~e~Ar~iyekaL~~~P~~~~l 470 (1070)
|. +.|++++-.++|+.|++.+|..+.+
T Consensus 562 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (932)
T PRK13184 562 YQ-RLGEYNEEIKSLLLALKRYSQHPEI 588 (932)
T ss_pred HH-HhhhHHHHHHHHHHHHHhcCCCCcc
No 381
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=64.15 E-value=37 Score=31.83 Aligned_cols=83 Identities=18% Similarity=0.066 Sum_probs=53.1
Q ss_pred CcHHHHHHHHHHHHHHCCCCHHHHHHHHH---HHHH----hCC-------HHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 001486 53 DDIEMIGLVYDSFLAEFPLCYGYWRKYAD---HKAR----LCS-------IDKVVEVFERAVQSATYSVDVWFHYCSLSM 118 (1070)
Q Consensus 53 ~~~~~a~~vyeraL~~~P~s~~lW~~ya~---~e~~----~~~-------~e~A~~lferAL~~~P~s~~lW~~y~~~~~ 118 (1070)
|+..+|.++.|.++..++++...|..... +..+ ..+ .-.+.+.|.+++...|.+......+++-+-
T Consensus 10 GnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~~la~~l~ 89 (111)
T PF04781_consen 10 GNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSLFELASQLG 89 (111)
T ss_pred cCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHHHHHHHHhh
Confidence 89999999999999999999988843322 1111 122 235667778888887777666665555543
Q ss_pred hhCCChhHHHHHHHHHHH
Q 001486 119 STFEDPNDVRRLFKRALS 136 (1070)
Q Consensus 119 ~~~~~~~~ar~vferAL~ 136 (1070)
.. ..|+++.+..+++|.
T Consensus 90 s~-~~Ykk~v~kak~~Ls 106 (111)
T PF04781_consen 90 SV-KYYKKAVKKAKRGLS 106 (111)
T ss_pred hH-HHHHHHHHHHHHHhc
Confidence 33 344555555555553
No 382
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=63.96 E-value=95 Score=33.54 Aligned_cols=72 Identities=11% Similarity=0.011 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHcCCCcchhHHHHHHHHHhccCCcccccCChhhHH--HHHHHHHHHH-HHhCCHHHHHHHHHHHHH
Q 001486 468 KLLLEELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVE--DISSLYLQFL-DLCGTIHDIRNAWNQHIK 542 (1070)
Q Consensus 468 ~~lw~~y~~~e~~~g~~~~~~~ar~l~ekAl~~~~~~s~~l~~~~~~--~l~~~~~~~e-~~~G~~~~a~~~~~ra~~ 542 (1070)
.++|..+++|........-.+.+...|++|+.... ..+++.++. .|..-|.-|. +..|+.+.|.++-+.++.
T Consensus 123 gDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~---~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 123 GDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAK---KELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHH---HHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred ccccccccccccchhhHHHHHHHHHhhhhHHHHHh---cccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 34454444444221111224567788888875322 125555554 4555566666 557888887666555443
No 383
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.87 E-value=1.4e+02 Score=37.70 Aligned_cols=85 Identities=18% Similarity=0.131 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhhhchHHHHHHHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHH
Q 001486 323 PEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANM 402 (1070)
Q Consensus 323 ~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~eA~~~~~~al~~~~p~~~~~w~~~a~l 402 (1070)
.++|.-| .+.|++++|..+.+..... ...+.+..|.|+...++|.+|..+|....+ .+.++-+++.
T Consensus 362 R~vWk~y----Ld~g~y~kAL~~ar~~p~~----le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~----~FEEVaLKFl-- 427 (911)
T KOG2034|consen 362 RDVWKTY----LDKGEFDKALEIARTRPDA----LETVLLKQADFLFQDKEYLRAAEIYAETLS----SFEEVALKFL-- 427 (911)
T ss_pred HHHHHHH----HhcchHHHHHHhccCCHHH----HHHHHHHHHHHHHhhhHHHHHHHHHHHhhh----hHHHHHHHHH--
Confidence 3567544 4567777776665433221 346888889999999999999999887753 2334444443
Q ss_pred HHHcCCHHHHHHHHHHHHHHH
Q 001486 403 ERRLGNFVAACDTYKEALETA 423 (1070)
Q Consensus 403 e~~~g~~~~A~~vyekal~~~ 423 (1070)
...+.+.-+.++.+=|+.+
T Consensus 428 --~~~~~~~L~~~L~KKL~~l 446 (911)
T KOG2034|consen 428 --EINQERALRTFLDKKLDRL 446 (911)
T ss_pred --hcCCHHHHHHHHHHHHhhC
Confidence 2334444455555555554
No 384
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.45 E-value=3.3e+02 Score=32.77 Aligned_cols=131 Identities=17% Similarity=0.035 Sum_probs=76.4
Q ss_pred HHHHHHHHHHcCCHH--HHHHHHHHHhccCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhhhc-hHHHHHHHHHH
Q 001486 292 WHDYLSFAEKQGDFD--WVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRL-PVIHLFNARYK 368 (1070)
Q Consensus 292 W~~yi~~~~~~g~~~--~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~-p~i~~~~a~~e 368 (1070)
|...+.++...+.++ ...+.........|...-+-+.+++.+...|+.+.|...++.++..-.+-. ...++..+...
T Consensus 234 y~~~~~~~~~~p~~d~~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~ 313 (546)
T KOG3783|consen 234 YYQFISFVLGTPNPDGEECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLS 313 (546)
T ss_pred HHHHHHHHcCCCCccHHHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 444555554444333 333333444446788888888889999999998899999988887311111 12333334444
Q ss_pred HHhCCHHHHHHHHHHHhhccChhhHHHHHHHH----------HHHHHcCCHHHHHHHHHHHHHHHH
Q 001486 369 EQIGDTSAARAAFPESYIDSDSRFIEKVTFKA----------NMERRLGNFVAACDTYKEALETAA 424 (1070)
Q Consensus 369 ~~~g~~~eA~~~~~~al~~~~p~~~~~w~~~a----------~le~~~g~~~~A~~vyekal~~~~ 424 (1070)
.-..++..|-..+....++.+= ...++.|. ......|+-+.|-.+++.+.+++.
T Consensus 314 v~~~~~~~aad~~~~L~desdW--S~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~ 377 (546)
T KOG3783|consen 314 VGQHQYSRAADSFDLLRDESDW--SHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLA 377 (546)
T ss_pred HHHHHHHHHhhHHHHHHhhhhh--hHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHH
Confidence 5566777777777776532211 11222221 133334677888888888777753
No 385
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=63.20 E-value=2.3e+02 Score=30.82 Aligned_cols=53 Identities=25% Similarity=0.221 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCcH---HHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Q 001486 409 FVAACDTYKEALETAAEQRKFHTLP---LLYVQFSRLTYTTTGSADNARDILIDGIK 462 (1070)
Q Consensus 409 ~~~A~~vyekal~~~~~~~~~~~~~---~l~i~~A~~~~~~~g~~e~Ar~iyekaL~ 462 (1070)
.+.|...|+.|++.... .-.|.+| .+.++|+-|++...++.++|.++-.+|+.
T Consensus 144 ~~~a~~aY~~A~e~a~~-~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd 199 (244)
T smart00101 144 AENTLVAYKSAQDIALA-ELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD 199 (244)
T ss_pred HHHHHHHHHHHHHHHHc-cCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 57899999999997532 1234444 57889999988788999999877666653
No 386
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=62.18 E-value=2.8e+02 Score=31.44 Aligned_cols=92 Identities=12% Similarity=0.080 Sum_probs=53.1
Q ss_pred HHHhCCHHHHHHHHHHHhhccC----h-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCC-cHHHHHHHHH
Q 001486 368 KEQIGDTSAARAAFPESYIDSD----S-RFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHT-LPLLYVQFSR 441 (1070)
Q Consensus 368 e~~~g~~~eA~~~~~~al~~~~----p-~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~-~~~l~i~~A~ 441 (1070)
.++.++.++|.+.+++.++.+. | ....+....+.+....|+.+++++..+++-+.+....+.+. ...-|...+.
T Consensus 85 ~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~lss 164 (380)
T KOG2908|consen 85 SEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSLSS 164 (380)
T ss_pred HHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHHHH
Confidence 3556688899998888764332 1 12223334455566779999999999888776543322222 1222333444
Q ss_pred HHHhhcCCHHHHHHHHHHHHh
Q 001486 442 LTYTTTGSADNARDILIDGIK 462 (1070)
Q Consensus 442 ~~~~~~g~~e~Ar~iyekaL~ 462 (1070)
-|++..|++..+ |..||.
T Consensus 165 qYyk~~~d~a~y---Yr~~L~ 182 (380)
T KOG2908|consen 165 QYYKKIGDFASY---YRHALL 182 (380)
T ss_pred HHHHHHHhHHHH---HHHHHH
Confidence 444466766554 455554
No 387
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=61.86 E-value=39 Score=36.77 Aligned_cols=59 Identities=12% Similarity=0.098 Sum_probs=41.0
Q ss_pred CCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCC
Q 001486 407 GNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPN 466 (1070)
Q Consensus 407 g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~g~~e~Ar~iyekaL~~~P~ 466 (1070)
..-...++++++|++.+...........+...+|..+. ..|++++|.++|+.++..+..
T Consensus 152 ~hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~-~~g~~~~A~~~l~~~~~~yr~ 210 (247)
T PF11817_consen 152 DHSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYF-RLGDYDKALKLLEPAASSYRR 210 (247)
T ss_pred chHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHh
Confidence 34456677777777776543333334456677888887 899999999999999766543
No 388
>KOG4592 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.66 E-value=37 Score=40.63 Aligned_cols=18 Identities=28% Similarity=0.213 Sum_probs=8.0
Q ss_pred CCCCCCCCCCCCCCCCCC
Q 001486 782 SSMGTQASSSAPIQTRTV 799 (1070)
Q Consensus 782 ~s~~~~~~~~~~~~~~~~ 799 (1070)
+.+.++||++-+++.+..
T Consensus 55 ~np~ssass~~~~~~N~~ 72 (728)
T KOG4592|consen 55 ANPLSSASSSSPAPLNAP 72 (728)
T ss_pred CCccccCccCCCCCcCcc
Confidence 334444444445544433
No 389
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=60.81 E-value=61 Score=33.19 Aligned_cols=100 Identities=11% Similarity=0.066 Sum_probs=61.1
Q ss_pred chHHHHHHHHHH-HHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHHHHhhccCC
Q 001486 357 LPVIHLFNARYK-EQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERR-----LGNFVAACDTYKEALETAAEQRKFH 430 (1070)
Q Consensus 357 ~p~i~~~~a~~e-~~~g~~~eA~~~~~~al~~~~p~~~~~w~~~a~le~~-----~g~~~~A~~vyekal~~~~~~~~~~ 430 (1070)
.|..-..++.++ -...+|++|.++|....++. .+.+..++|+..... .+++..|...|+.|.+.
T Consensus 33 ~Pe~C~lLgdYlEgi~knF~~A~kv~K~nCden--~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~-------- 102 (248)
T KOG4014|consen 33 RPESCQLLGDYLEGIQKNFQAAVKVFKKNCDEN--SYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDA-------- 102 (248)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhccccc--CCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhcc--------
Confidence 344444444443 34677888888888765322 445556666654432 24678888888888774
Q ss_pred CcHHHHHHHHHHHHh----hcCC--HHHHHHHHHHHHhhCCC
Q 001486 431 TLPLLYVQFSRLTYT----TTGS--ADNARDILIDGIKHVPN 466 (1070)
Q Consensus 431 ~~~~l~i~~A~~~~~----~~g~--~e~Ar~iyekaL~~~P~ 466 (1070)
..+..-.+.+.+.+. +.++ .++|+.++.|+....-.
T Consensus 103 n~~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~~~ 144 (248)
T KOG4014|consen 103 NIPQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLEDG 144 (248)
T ss_pred CCHHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCCCc
Confidence 345555556666552 1223 77899999998765443
No 390
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.35 E-value=3.6e+02 Score=34.19 Aligned_cols=36 Identities=8% Similarity=-0.002 Sum_probs=19.6
Q ss_pred cCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 001486 507 VFSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQHIKL 543 (1070)
Q Consensus 507 ~l~~~~~~~l~~~~~~~e~~~G~~~~a~~~~~ra~~~ 543 (1070)
+||++........|.+.+.++ ..++.++++-+.+..
T Consensus 515 slp~~e~l~~l~kyGk~Ll~h-~P~~t~~ili~~~t~ 550 (933)
T KOG2114|consen 515 SLPISELLRTLNKYGKILLEH-DPEETMKILIELITE 550 (933)
T ss_pred cCCHHHHHHHHHHHHHHHHhh-ChHHHHHHHHHHHhh
Confidence 566666666666666665543 344444444444443
No 391
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=59.99 E-value=1.6e+02 Score=33.26 Aligned_cols=102 Identities=15% Similarity=0.020 Sum_probs=62.9
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHhhccC-----hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcH-HHH
Q 001486 363 FNARYKEQIGDTSAARAAFPESYIDSD-----SRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLP-LLY 436 (1070)
Q Consensus 363 ~~a~~e~~~g~~~eA~~~~~~al~~~~-----p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~-~l~ 436 (1070)
.++.++...++|.+|..+....++++. ...+++...-...+..+.++.+|+..+..|......-..+|..- .+=
T Consensus 133 rli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lD 212 (411)
T KOG1463|consen 133 RLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLD 212 (411)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHH
Confidence 445666778899999988777654432 12344454445556667888999998888876632221121111 122
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHhhCC
Q 001486 437 VQFSRLTYTTTGSADNARDILIDGIKHVP 465 (1070)
Q Consensus 437 i~~A~~~~~~~g~~e~Ar~iyekaL~~~P 465 (1070)
+.-|-+.. ..+|+..|+.+|-.|++-+-
T Consensus 213 LqSGIlha-~ekDykTafSYFyEAfEgf~ 240 (411)
T KOG1463|consen 213 LQSGILHA-AEKDYKTAFSYFYEAFEGFD 240 (411)
T ss_pred Hhccceee-cccccchHHHHHHHHHcccc
Confidence 22233333 45899999999999998643
No 392
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=59.98 E-value=65 Score=30.26 Aligned_cols=98 Identities=11% Similarity=0.138 Sum_probs=50.4
Q ss_pred HcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhCChhHHHHHH-HHHHHHHhhhchHHHHHHHHHHHHhCCHHHHHH
Q 001486 301 KQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYAL-DRATQIFLKRLPVIHLFNARYKEQIGDTSAARA 379 (1070)
Q Consensus 301 ~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il-~rAl~~~~~~~p~i~~~~a~~e~~~g~~~eA~~ 379 (1070)
..|+.-+|.++.+..+...++....|+ +....| .|| +-|..+ ++|.+-+.|- -.+.+
T Consensus 8 ~rGnhiKAL~iied~i~~h~~~~~~~~----lh~~QG------~if~~lA~~t---en~d~k~~yL---------l~sve 65 (111)
T PF04781_consen 8 ARGNHIKALEIIEDLISRHGEDESSWL----LHRLQG------TIFYKLAKKT---ENPDVKFRYL---------LGSVE 65 (111)
T ss_pred HccCHHHHHHHHHHHHHHccCCCchHH----HHHHHh------HHHHHHHHhc---cCchHHHHHH---------HHhHH
Confidence 467777777777777777777776662 223334 233 222222 2343332211 23556
Q ss_pred HHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001486 380 AFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALE 421 (1070)
Q Consensus 380 ~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~vyekal~ 421 (1070)
.|.++. .+.|......+.+++-......++++..-.+++|.
T Consensus 66 ~~s~a~-~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Ls 106 (111)
T PF04781_consen 66 CFSRAV-ELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLS 106 (111)
T ss_pred HHHHHh-ccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 677776 56666655555555433333334444444444443
No 393
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=59.48 E-value=2e+02 Score=29.47 Aligned_cols=123 Identities=17% Similarity=0.078 Sum_probs=59.8
Q ss_pred HhhCChhHHHHHHHHHHHHHhhhchH-HHHHHHHHHHHhCCHHHHHHHHHHHhhcc-ChhhH--HHHHHHHHHHHHcCCH
Q 001486 334 ESKGGREIASYALDRATQIFLKRLPV-IHLFNARYKEQIGDTSAARAAFPESYIDS-DSRFI--EKVTFKANMERRLGNF 409 (1070)
Q Consensus 334 ~~~g~~e~A~~il~rAl~~~~~~~p~-i~~~~a~~e~~~g~~~eA~~~~~~al~~~-~p~~~--~~w~~~a~le~~~g~~ 409 (1070)
...++.++|...|...-+.-....|. ..+..+.+....|+..+|...|..+-+.. .|... ..-++.+-++...|.|
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 34455566665554333222223342 33344555666777777777777654211 11111 1122333344555666
Q ss_pred HHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Q 001486 410 VAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIK 462 (1070)
Q Consensus 410 ~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~g~~e~Ar~iyekaL~ 462 (1070)
+....-.+-.-. +..+-....--.+|..-+ ..|++.+|++.|.....
T Consensus 149 ~dV~srvepLa~-----d~n~mR~sArEALglAa~-kagd~a~A~~~F~qia~ 195 (221)
T COG4649 149 DDVSSRVEPLAG-----DGNPMRHSAREALGLAAY-KAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHhhhccC-----CCChhHHHHHHHHhHHHH-hccchHHHHHHHHHHHc
Confidence 555443332110 112222233344444445 78888888888887765
No 394
>PF14929 TAF1_subA: TAF RNA Polymerase I subunit A
Probab=59.47 E-value=85 Score=38.23 Aligned_cols=129 Identities=11% Similarity=0.080 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 001486 37 FDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSL 116 (1070)
Q Consensus 37 ~~~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P~s~~lW~~ya~~e~~~~~~e~A~~lferAL~~~P~s~~lW~~y~~~ 116 (1070)
+.+--.+.+.+.. +....+..+|++++++.|.....-..++.+..+.-+.....++..--+... -+.++|+.|+..
T Consensus 345 i~~~~~lle~~d~---~~~~~l~~~~e~~~~~~P~~~~~le~l~~~~~~~~~~~~Lle~i~~~l~~~-~s~~iwle~~~~ 420 (547)
T PF14929_consen 345 IRLRAHLLEYFDQ---NNSSVLSSCLEDCLKKDPTMSYSLERLILLHQKDYSAEQLLEMIALHLDLV-PSHPIWLEFVSC 420 (547)
T ss_pred HHHHHHHHHHhCc---ccHHHHHHHHHHHhcCCCcHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcC-CCchHHHHHHHH
Q ss_pred HHhhCCChhHHHHHHHHHHHHc------CCCCCchHHHHHHHHHHHHcccHHHHHHHHH
Q 001486 117 SMSTFEDPNDVRRLFKRALSFV------GKDYLCHTMWDKYIEFEISQQRWSSLAQIFV 169 (1070)
Q Consensus 117 ~~~~~~~~~~ar~vferAL~~~------p~~~~s~~lW~~yi~fe~~~~~~~~a~~iy~ 169 (1070)
.+...++.+..++-...|++.+ +..-.....|....+........+.+++.++
T Consensus 421 ~l~~~~~~~~~~e~~~~~l~vlf~~LDf~~~r~n~~aW~~l~~~l~~i~~~~~~~~~W~ 479 (547)
T PF14929_consen 421 FLKNPSRFEDKEEDHKSALKVLFEFLDFAGWRKNIQAWKLLAKKLPKIFDLDWVREEWR 479 (547)
T ss_pred HHhccccccccHHHHHHHHhcchhcccccccccccHHHHHHHHHhhHhhhhhchHHHHH
No 395
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=59.46 E-value=3.4e+02 Score=31.56 Aligned_cols=95 Identities=11% Similarity=0.015 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCC---CHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHh------hh-chHH
Q 001486 291 NWHDYLSFAEKQGDFDWVVKLYERCLIPCAD---YPEFWMRYVDFMESKGGREIASYALDRATQIFL------KR-LPVI 360 (1070)
Q Consensus 291 ~W~~yi~~~~~~g~~~~a~~~yerAL~~~p~---~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~------~~-~p~i 360 (1070)
....+++++...|+++.|...|-|+-..|.. ...+|++...+-.-.|++-.......+|..... .. .+.+
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl 231 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKL 231 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcch
Confidence 5667888888999999999999997766644 357788888888888888777777777765410 11 1357
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHh
Q 001486 361 HLFNARYKEQIGDTSAARAAFPESY 385 (1070)
Q Consensus 361 ~~~~a~~e~~~g~~~eA~~~~~~al 385 (1070)
.++.|..+...+++..|.+.|-.+.
T Consensus 232 ~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 232 KCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 7887777777779998888887663
No 396
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=59.36 E-value=60 Score=42.68 Aligned_cols=153 Identities=12% Similarity=0.001 Sum_probs=99.0
Q ss_pred HHHHHHHHHh-ccCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhh----hchH---HHHHHHHHHHHhCCHHHHH
Q 001486 307 WVVKLYERCL-IPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLK----RLPV---IHLFNARYKEQIGDTSAAR 378 (1070)
Q Consensus 307 ~a~~~yerAL-~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~----~~p~---i~~~~a~~e~~~g~~~eA~ 378 (1070)
++..++++.. ...|.....+..+++.+.+.|+.++|+..-.+|+-+..+ +.++ -+...+.++...++...|.
T Consensus 956 ~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al 1035 (1236)
T KOG1839|consen 956 ESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGAL 1035 (1236)
T ss_pred hhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchh
Confidence 3444666444 346778888999999999999999999998888875322 2233 3444556677777888888
Q ss_pred HHHHHHhh-------ccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcc--CCCcHHHHHHHHHHHHhhcCC
Q 001486 379 AAFPESYI-------DSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRK--FHTLPLLYVQFSRLTYTTTGS 449 (1070)
Q Consensus 379 ~~~~~al~-------~~~p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~--~~~~~~l~i~~A~~~~~~~g~ 449 (1070)
..+-++++ +..|....+......++...+.++.|..+.+.|++....-.. .-.....+..+|++.. ..++
T Consensus 1036 ~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~-s~~d 1114 (1236)
T KOG1839|consen 1036 KSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFE-SMKD 1114 (1236)
T ss_pred hhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHh-hhHH
Confidence 88887763 223444555566666666778999999999999986321111 1123345555565554 5555
Q ss_pred HHHHHHHHHHH
Q 001486 450 ADNARDILIDG 460 (1070)
Q Consensus 450 ~e~Ar~iyeka 460 (1070)
+..|....+.+
T Consensus 1115 fr~al~~ek~t 1125 (1236)
T KOG1839|consen 1115 FRNALEHEKVT 1125 (1236)
T ss_pred HHHHHHHHhhH
Confidence 55555444444
No 397
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=58.95 E-value=4.6e+02 Score=32.93 Aligned_cols=37 Identities=14% Similarity=0.174 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcc
Q 001486 513 VEDISSLYLQFLDLCGTIHDIRNAWNQHIKLFPHTVR 549 (1070)
Q Consensus 513 ~~~l~~~~~~~e~~~G~~~~a~~~~~ra~~~~p~~~~ 549 (1070)
.+++..+-.+|+.--+.++++..+|+-....+.+.+.
T Consensus 364 e~Dl~el~~rledir~emDd~~~~f~lL~n~vkdT~a 400 (1102)
T KOG1924|consen 364 EDDLEELSGRLEDIRAEMDDANEVFELLANTVKDTGA 400 (1102)
T ss_pred hhhHHHHHhHHHhhhhhhccHHHHHHHHHHhhhhccc
Confidence 3688888999999999999999999998888877665
No 398
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=57.68 E-value=12 Score=25.07 Aligned_cols=25 Identities=20% Similarity=0.293 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHH
Q 001486 434 LLYVQFSRLTYTTTGSADNARDILID 459 (1070)
Q Consensus 434 ~l~i~~A~~~~~~~g~~e~Ar~iyek 459 (1070)
.+.+.+|.++. ..|++++|+.++++
T Consensus 2 ~a~~~la~~~~-~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 2 RARLALARALL-AQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHH-HcCCHHHHHHHHhC
Confidence 35677888888 99999999998863
No 399
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=56.89 E-value=1.5e+02 Score=34.55 Aligned_cols=56 Identities=11% Similarity=-0.120 Sum_probs=37.3
Q ss_pred HHHHHhhCChhHHHHHHHHHHHHHhhhchH--HH--HHHHHHHHHhCCHHHHHHHHHHHhh
Q 001486 330 VDFMESKGGREIASYALDRATQIFLKRLPV--IH--LFNARYKEQIGDTSAARAAFPESYI 386 (1070)
Q Consensus 330 a~~l~~~g~~e~A~~il~rAl~~~~~~~p~--i~--~~~a~~e~~~g~~~eA~~~~~~al~ 386 (1070)
+..++..+++..|..+|+..+.. .+.... .+ +..+...+..-++.+|.+.|+..++
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 44456778899999999998875 332222 11 1122335667788999999998874
No 400
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=56.88 E-value=3.4e+02 Score=30.77 Aligned_cols=60 Identities=12% Similarity=0.182 Sum_probs=46.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Q 001486 402 MERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIK 462 (1070)
Q Consensus 402 le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~g~~e~Ar~iyekaL~ 462 (1070)
+.++.++.++|.+..++.++.+...+.+.....+....|+++. ..||..+++++.+.+=+
T Consensus 84 ~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L-~i~DLk~~kk~ldd~~~ 143 (380)
T KOG2908|consen 84 VSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKL-EINDLKEIKKLLDDLKS 143 (380)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHH-hcccHHHHHHHHHHHHH
Confidence 4466789999999999999987655443344556677788887 89999999999887755
No 401
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=56.18 E-value=3.1e+02 Score=30.10 Aligned_cols=48 Identities=15% Similarity=0.027 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 001486 412 ACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDG 460 (1070)
Q Consensus 412 A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~g~~e~Ar~iyeka 460 (1070)
-.+..++|++--+.......++.++..+|..++ +.|++.+|+..|-.+
T Consensus 69 r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~-~e~~~~~A~~Hfl~~ 116 (260)
T PF04190_consen 69 RKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLW-KEGNYYEAERHFLLG 116 (260)
T ss_dssp HHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHH-HTT-HHHHHHHHHTS
T ss_pred HHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHH-hhccHHHHHHHHHhc
Confidence 344556666653222234568899999999999 899999999888544
No 402
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=54.99 E-value=34 Score=25.14 Aligned_cols=32 Identities=13% Similarity=-0.074 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHH--HHHHHhhCCC
Q 001486 434 LLYVQFSRLTYTTTGSADNARDI--LIDGIKHVPN 466 (1070)
Q Consensus 434 ~l~i~~A~~~~~~~g~~e~Ar~i--yekaL~~~P~ 466 (1070)
+.|..+|..+. ..|++++|+++ |+-+....+.
T Consensus 2 e~~y~~a~~~y-~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 2 EYLYGLAYNFY-QKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHH-HTT-HHHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHhccc
Confidence 45677788777 99999999999 5577666554
No 403
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=53.15 E-value=21 Score=23.79 Aligned_cols=16 Identities=31% Similarity=0.227 Sum_probs=6.4
Q ss_pred HHHHHHhCCHHHHHHH
Q 001486 365 ARYKEQIGDTSAARAA 380 (1070)
Q Consensus 365 a~~e~~~g~~~eA~~~ 380 (1070)
+..+...|++++|+.+
T Consensus 8 a~~~~~~G~~~eA~~~ 23 (26)
T PF07721_consen 8 ARALLAQGDPDEAERL 23 (26)
T ss_pred HHHHHHcCCHHHHHHH
Confidence 3333334444444433
No 404
>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996. This model describes an abundant paralogous domain of Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. The domain also occurs, although rarely, in Myxococcus xanthus DK 1622 and related species. Most member proteins have extensive repeats similar to the leucine-rich repeat, or another repeat class or region of low-complexity sequence. This domain is not repeated, and in Gemmata is usually found at the protein N-terminus.
Probab=52.61 E-value=32 Score=26.15 Aligned_cols=23 Identities=13% Similarity=0.050 Sum_probs=8.7
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhh
Q 001486 98 RAVQSATYSVDVWFHYCSLSMST 120 (1070)
Q Consensus 98 rAL~~~P~s~~lW~~y~~~~~~~ 120 (1070)
+||...|.+...|+.|+.|+..+
T Consensus 7 ~AI~~~P~ddt~RLvYADWL~e~ 29 (42)
T TIGR02996 7 RAILAHPDDDTPRLVYADWLDEH 29 (42)
T ss_pred HHHHhCCCCcchHHHHHHHHHHc
Confidence 33333333333333333333333
No 405
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=51.47 E-value=1.7e+02 Score=31.48 Aligned_cols=98 Identities=12% Similarity=-0.041 Sum_probs=65.9
Q ss_pred hcCCHHHHHHHHHHHHhh---CCCcH---------HHHHHHHHHHHHcCCCcchhHHHHHHHHHhccCCcccccCChhhH
Q 001486 446 TTGSADNARDILIDGIKH---VPNCK---------LLLEELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDV 513 (1070)
Q Consensus 446 ~~g~~e~Ar~iyekaL~~---~P~~~---------~lw~~y~~~e~~~g~~~~~~~ar~l~ekAl~~~~~~s~~l~~~~~ 513 (1070)
..|+++.|.++.+.||+. .|+.. +-...|+.-....|..-+.. ....|++... .-.++++-.
T Consensus 95 D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~-~~~~~~~l~~-----~~dmpd~vr 168 (230)
T PHA02537 95 DIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPY-FLRVFLDLTT-----EWDMPDEVR 168 (230)
T ss_pred eccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChH-HHHHHHHHHh-----cCCCChHHH
Confidence 899999999999999995 34321 23334555555566543332 2333444432 134666666
Q ss_pred HHHHHHHHHHH---------HHhCCHHHHHHHHHHHHHhCCCCcc
Q 001486 514 EDISSLYLQFL---------DLCGTIHDIRNAWNQHIKLFPHTVR 549 (1070)
Q Consensus 514 ~~l~~~~~~~e---------~~~G~~~~a~~~~~ra~~~~p~~~~ 549 (1070)
..++......+ .+.+++..|...++||+.+.|+.+.
T Consensus 169 AKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~GV 213 (230)
T PHA02537 169 AKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCGV 213 (230)
T ss_pred HHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCCh
Confidence 77777777766 3567888999999999999999664
No 406
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.11 E-value=3.8e+02 Score=33.98 Aligned_cols=29 Identities=21% Similarity=0.248 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 001486 290 KNWHDYLSFAEKQGDFDWVVKLYERCLIP 318 (1070)
Q Consensus 290 ~~W~~yi~~~~~~g~~~~a~~~yerAL~~ 318 (1070)
.+.++|++++...|++++|..-|-+++..
T Consensus 369 ~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 369 EIHRKYGDYLYGKGDFDEATDQYIETIGF 397 (933)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence 67899999999999999999999999964
No 407
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=51.10 E-value=2.6e+02 Score=32.99 Aligned_cols=161 Identities=14% Similarity=0.070 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhC--------------ChhHHHHHHHHHHHHHhh-
Q 001486 291 NWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKG--------------GREIASYALDRATQIFLK- 355 (1070)
Q Consensus 291 ~W~~yi~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g--------------~~e~A~~il~rAl~~~~~- 355 (1070)
.-.+++++..-.+|++-|..+|+-+.... .+...|.-||-.++-.+ ..++....++.|+..+.+
T Consensus 210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df-~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~ 288 (414)
T PF12739_consen 210 QMRRLADLAFMLRDYELAYSTYRLLKKDF-KNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKS 288 (414)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHH-hhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhh
Confidence 45667788888899999999999887643 34567777766555432 113555666666665544
Q ss_pred ---hch------HHHHHHHHHHHHhCCHHHHHHHHHHHhhcc-ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 001486 356 ---RLP------VIHLFNARYKEQIGDTSAARAAFPESYIDS-DSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAE 425 (1070)
Q Consensus 356 ---~~p------~i~~~~a~~e~~~g~~~eA~~~~~~al~~~-~p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~ 425 (1070)
.+. ..-+..++++...+.+.+|...+-++..++ ..+.. . +..+-++ +.+--+| ++ ..
T Consensus 289 ~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l~-~-~~~alll------E~~a~~~--~~---~~ 355 (414)
T PF12739_consen 289 ALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDLR-P-FGSALLL------EQAAYCY--AS---LR 355 (414)
T ss_pred hccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhhh-h-HhhHHHH------HHHHHhh--cc---cc
Confidence 111 233334455555666666655555544221 00000 0 0011111 2222222 00 00
Q ss_pred hccC-C-----CcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCC
Q 001486 426 QRKF-H-----TLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVP 465 (1070)
Q Consensus 426 ~~~~-~-----~~~~l~i~~A~~~~~~~g~~e~Ar~iyekaL~~~P 465 (1070)
.... + ...-+|+-+|--.+...|....|..+|.+++..+.
T Consensus 356 ~~~~~~~~~r~RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~ 401 (414)
T PF12739_consen 356 SNRPSPGLTRFRKYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYE 401 (414)
T ss_pred cCCCCccchhhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhC
Confidence 0000 1 12345666666555689999999999999987655
No 408
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=50.93 E-value=22 Score=30.88 Aligned_cols=35 Identities=14% Similarity=0.275 Sum_probs=26.4
Q ss_pred CHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhC
Q 001486 408 NFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHV 464 (1070)
Q Consensus 408 ~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~g~~e~Ar~iyekaL~~~ 464 (1070)
++++|+.++.+|++. ...|++++|+.+|..||+.|
T Consensus 2 ~l~kai~Lv~~A~~e----------------------D~~gny~eA~~lY~~ale~~ 36 (75)
T cd02680 2 DLERAHFLVTQAFDE----------------------DEKGNAEEAIELYTEAVELC 36 (75)
T ss_pred CHHHHHHHHHHHHHh----------------------hHhhhHHHHHHHHHHHHHHH
Confidence 356677777777654 27899999999999998653
No 409
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.86 E-value=1.2e+02 Score=27.93 Aligned_cols=69 Identities=16% Similarity=0.163 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCC
Q 001486 409 FVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLLLEELIKFTMVHGG 483 (1070)
Q Consensus 409 ~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~g~~e~Ar~iyekaL~~~P~~~~lw~~y~~~e~~~g~ 483 (1070)
.+.-...+++-++....+. .+.-|.+...+|.+|. ..|+.|.|..-|+.--..+|.+.. |.+|+++.+.
T Consensus 49 ~e~Q~~~le~~~ek~~ak~-~~vpPG~HAhLGlLys-~~G~~e~a~~eFetEKalFPES~~----fmDFLmk~~k 117 (121)
T COG4259 49 KEAQTAALEKYLEKIGAKN-GAVPPGYHAHLGLLYS-NSGKDEQAVREFETEKALFPESGV----FMDFLMKNGK 117 (121)
T ss_pred HHHHHHHHHHHHHHHhhcC-CCCCCcHHHHHHHHHh-hcCChHHHHHHHHHhhhhCccchh----HHHHHHHccc
Confidence 3444455555555543222 4455678888888887 999999999999988889999988 7788887653
No 410
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=50.28 E-value=2.7e+02 Score=33.84 Aligned_cols=37 Identities=11% Similarity=-0.102 Sum_probs=18.7
Q ss_pred CCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhCCh
Q 001486 303 GDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGR 339 (1070)
Q Consensus 303 g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~ 339 (1070)
++...+.-..+.++..+|.+......++..++..|..
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~ 117 (620)
T COG3914 81 ADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQ 117 (620)
T ss_pred ccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhH
Confidence 3444444455555555555555555555555544443
No 411
>PF12144 Med12-PQL: Eukaryotic Mediator 12 catenin-binding domain; InterPro: IPR021989 This domain is found in eukaryotes, and is typically between 325 and 354 amino acids in length. It is found in the C-terminal region of the mediator of RNA polymerase II transcription subunit 12. Both development and carcinogenesis are driven by signal transduction within the canonical Wnt/beta-catenin pathway through both programmed and unprogrammed changes in gene transcription. Beta-catenin physically and functionally targets this PQL (proline-, glutamine-, leucine-rich) region of the Med12 subunit of Mediator to activate transcription. The beta-catenin transactivation domain binds directly to isolated Med12 and intact Mediator both in vitro and in vivo, and Mediator is recruited to Wnt-responsive genes in a beta-catenin-dependent manner. ; GO: 0008013 beta-catenin binding, 0016592 mediator complex
Probab=49.61 E-value=19 Score=36.79 Aligned_cols=65 Identities=8% Similarity=-0.032 Sum_probs=38.4
Q ss_pred CcccCCCCccc-ccCCccCC-CCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcc
Q 001486 827 NWHEQQNPDRV-HRDLRFGY-RGHSHKRQHQQRRFSSQRYPRNESGDQMPMNSRFPSQPLPSQNPQA 891 (1070)
Q Consensus 827 n~~~~~~~~~~-~~~p~~~~-~~~~~~~~~qq~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~q~ 891 (1070)
..+++.....| .+++..|+ .+.+|++.+++++.....+.+++.+...+..++.++........|.
T Consensus 109 q~~q~~p~~~Y~~lq~aqGYTmYgt~M~LQQ~~~q~~gvvsPsY~~r~Y~~aHp~SNPaLmerlRQm 175 (204)
T PF12144_consen 109 QVRQMTPSPQYPGLQQAQGYTMYGTQMPLQQHPQQGGGVVSPSYNSRTYQAAHPSSNPALMERLRQM 175 (204)
T ss_pred hhccCCCCCCCcccccccCcccccccccccccCCCCCeeeCCCCCCCCCCCCCCCCCchhhhhhhhc
Confidence 35566666666 46776787 6678888887776544455566666655555544444443333333
No 412
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=49.28 E-value=2.8e+02 Score=27.64 Aligned_cols=52 Identities=17% Similarity=0.010 Sum_probs=24.1
Q ss_pred cCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhC
Q 001486 406 LGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHV 464 (1070)
Q Consensus 406 ~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~g~~e~Ar~iyekaL~~~ 464 (1070)
.++++++..+++...-+ .|..+.+-+.-|.+.. ..|++++|..+|+.....-
T Consensus 23 ~~d~~D~e~lLdALrvL------rP~~~e~d~~dg~l~i-~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 23 SADPYDAQAMLDALRVL------RPNLKELDMFDGWLLI-ARGNYDEAARILRELLSSA 74 (153)
T ss_pred cCCHHHHHHHHHHHHHh------CCCccccchhHHHHHH-HcCCHHHHHHHHHhhhccC
Confidence 45555555555544443 2333333333333333 5555555555555554433
No 413
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=48.30 E-value=5e+02 Score=30.21 Aligned_cols=125 Identities=11% Similarity=0.057 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCC--cHHH
Q 001486 393 IEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPN--CKLL 470 (1070)
Q Consensus 393 ~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~g~~e~Ar~iyekaL~~~P~--~~~l 470 (1070)
.++|+.+...++..|+....+..+..-+....-..+....+-+..-+-+.+. ..+-++.|-+...+.. +|+ +-..
T Consensus 169 ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL-~n~lydqa~~lvsK~~--~pe~~snne 245 (493)
T KOG2581|consen 169 AKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYL-HNKLYDQADKLVSKSV--YPEAASNNE 245 (493)
T ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHh-hhHHHHHHHHHhhccc--CccccccHH
Confidence 4567777777777788888887777666653211111122223333334444 6777888877666553 444 3345
Q ss_pred HHHHHHHHH----HcCCCcchhHHHHHHHHHhccCCcccccCChhhHHHHHHHHHHHH
Q 001486 471 LEELIKFTM----VHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFL 524 (1070)
Q Consensus 471 w~~y~~~e~----~~g~~~~~~~ar~l~ekAl~~~~~~s~~l~~~~~~~l~~~~~~~e 524 (1070)
|..|.-+.- ..++... |...|-.|+.+.|- ...+.....-..|...+.+.
T Consensus 246 ~ARY~yY~GrIkaiqldYss---A~~~~~qa~rkapq-~~alGf~q~v~k~~ivv~ll 299 (493)
T KOG2581|consen 246 WARYLYYLGRIKAIQLDYSS---ALEYFLQALRKAPQ-HAALGFRQQVNKLMIVVELL 299 (493)
T ss_pred HHHHHHHHhhHHHhhcchhH---HHHHHHHHHHhCcc-hhhhhHHHHHHHHHHHHHHH
Confidence 665554432 2345444 66888888876552 22333344444555555444
No 414
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=46.19 E-value=85 Score=25.29 Aligned_cols=24 Identities=13% Similarity=0.151 Sum_probs=11.8
Q ss_pred HHHhCCHHHHHHHHHHHhhccChhh
Q 001486 368 KEQIGDTSAARAAFPESYIDSDSRF 392 (1070)
Q Consensus 368 e~~~g~~~eA~~~~~~al~~~~p~~ 392 (1070)
..+.|++++|+...+.++ .++|++
T Consensus 11 ~ykl~~Y~~A~~~~~~lL-~~eP~N 34 (53)
T PF14853_consen 11 HYKLGEYEKARRYCDALL-EIEPDN 34 (53)
T ss_dssp HHHTT-HHHHHHHHHHHH-HHTTS-
T ss_pred HHHhhhHHHHHHHHHHHH-hhCCCc
Confidence 345555555555555555 444544
No 415
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=46.01 E-value=6.5e+02 Score=33.31 Aligned_cols=170 Identities=11% Similarity=0.078 Sum_probs=90.1
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHhhcc---------------------------Chhh-HHHHHHHHHHHHHcCCHHHHH
Q 001486 362 LFNARYKEQIGDTSAARAAFPESYIDS---------------------------DSRF-IEKVTFKANMERRLGNFVAAC 413 (1070)
Q Consensus 362 ~~~a~~e~~~g~~~eA~~~~~~al~~~---------------------------~p~~-~~~w~~~a~le~~~g~~~~A~ 413 (1070)
++.|..+...|+.-+|+.+|.+|...+ .+.. +..|.+...+..+.+-.+.+.
T Consensus 924 fmlg~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~vc 1003 (1480)
T KOG4521|consen 924 FMLGIAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEEVC 1003 (1480)
T ss_pred HhhheeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHHHH
Confidence 333444556778888888888775311 0111 445566677888888889999
Q ss_pred HHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcH---HHHHHHHHHHHHcCCCcch---
Q 001486 414 DTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCK---LLLEELIKFTMVHGGRSHI--- 487 (1070)
Q Consensus 414 ~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~g~~e~Ar~iyekaL~~~P~~~---~lw~~y~~~e~~~g~~~~~--- 487 (1070)
.+-.+||+.++++ .|..+-++... . +.+=+...=.+.|+ ||-.+|++. +....++-.+...|..+.+
T Consensus 1004 QlA~~AIe~l~dd--~ps~a~~~t~v---F-nhhldlgh~~qAy~-ai~~npdserrrdcLRqlvivLfecg~l~~L~~f 1076 (1480)
T KOG4521|consen 1004 QLAVKAIENLPDD--NPSVALISTTV---F-NHHLDLGHWFQAYK-AILRNPDSERRRDCLRQLVIVLFECGELEALATF 1076 (1480)
T ss_pred HHHHHHHHhCCCc--chhHHHHHHHH---H-HhhhchhhHHHHHH-HHHcCCcHHHHHHHHHHHHHHHHhccchHHHhhC
Confidence 9999999886322 22222222221 1 12223333333342 334566642 2222233222222322110
Q ss_pred ------hHHHH-HHHHHhccCCcccccCChhhHHHHHHHHHHHHHHhCCHHHHH-HHHHHHHHhCCC
Q 001486 488 ------SIVDA-VISNALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIR-NAWNQHIKLFPH 546 (1070)
Q Consensus 488 ------~~ar~-l~ekAl~~~~~~s~~l~~~~~~~l~~~~~~~e~~~G~~~~a~-~~~~ra~~~~p~ 546 (1070)
+.+.. +++.|....+ -.....|+....|+-.-+|+..|- .+|+-+.++--+
T Consensus 1077 pfigl~~eve~~l~esaaRs~~--------~mk~nyYelLYAfh~~RhN~RkaatvMYEyamrl~se 1135 (1480)
T KOG4521|consen 1077 PFIGLEQEVEDFLRESAARSSP--------SMKKNYYELLYAFHVARHNFRKAATVMYEYAMRLESE 1135 (1480)
T ss_pred CccchHHHHHHHHHHHHhhcCc--------cccccHHHHHHHHHHhhcchhHHHHHHHHHHHHhccc
Confidence 12334 7777664322 234456777778887778877754 456766666544
No 416
>KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only]
Probab=45.90 E-value=4.1e+02 Score=32.15 Aligned_cols=72 Identities=10% Similarity=0.044 Sum_probs=51.4
Q ss_pred CCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCc-HHHHHHHHHHHHHcCCCcchhHHHHHHHHHhccCC
Q 001486 429 FHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNC-KLLLEELIKFTMVHGGRSHISIVDAVISNALYSRP 502 (1070)
Q Consensus 429 ~~~~~~l~i~~A~~~~~~~g~~e~Ar~iyekaL~~~P~~-~~lw~~y~~~e~~~g~~~~~~~ar~l~ekAl~~~~ 502 (1070)
......+|-.||..+. +.+++..||.-|.++++.-..+ +++....+++.. -|....+..+|+.|+...+..|
T Consensus 583 ~iD~f~aW~AWGlA~L-k~e~~aaAR~KFkqafklkgedipdvi~diin~ie-Ggpp~dVq~Vrem~dhlak~ap 655 (1141)
T KOG1811|consen 583 GIDTFGAWHAWGLACL-KAENLAAAREKFKQAFKLKGEDIPDVIFDIINLIE-GGPPRDVQDVREMLDHLAKPAP 655 (1141)
T ss_pred CCCcccHHHHHHHHHH-HhhhHHHHHHHHHHHhCCCCCccchHHHHHHHhhc-CCCcchHHHHHHHHHHhccCCc
Confidence 4556789999999988 9999999999999999987654 455554554432 2333445667888888775433
No 417
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=45.90 E-value=3.3e+02 Score=34.94 Aligned_cols=81 Identities=15% Similarity=0.098 Sum_probs=54.1
Q ss_pred CHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCC--cHHHHHHHHHHHHHcCCCc
Q 001486 408 NFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPN--CKLLLEELIKFTMVHGGRS 485 (1070)
Q Consensus 408 ~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~g~~e~Ar~iyekaL~~~P~--~~~lw~~y~~~e~~~g~~~ 485 (1070)
..+.-.+.|.+.++-+ ...+.++|......+. .+|.+-+|.+++.++++.... ..+.|...+++....|-.
T Consensus 1211 ~ld~~~e~y~el~kw~-----d~~dsK~~~~a~~ha~-~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lgw~- 1283 (1304)
T KOG1114|consen 1211 KLDSYNENYQELLKWL-----DASDSKVWQIAKKHAK-ALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLGWN- 1283 (1304)
T ss_pred hhhhHHHHHHHHHHHh-----hcCCchheehhHHHHH-HHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhCch-
Confidence 3566667777777765 3344555544444443 889999999999999996555 457888888888777733
Q ss_pred chhHHHHHHHHHh
Q 001486 486 HISIVDAVISNAL 498 (1070)
Q Consensus 486 ~~~~ar~l~ekAl 498 (1070)
+ .+..+++..
T Consensus 1284 H---~~t~~~~~~ 1293 (1304)
T KOG1114|consen 1284 H---LATFVKNWM 1293 (1304)
T ss_pred H---hHHHHhhhe
Confidence 2 345555544
No 418
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=45.21 E-value=32 Score=26.53 Aligned_cols=25 Identities=24% Similarity=0.448 Sum_probs=21.6
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHh
Q 001486 437 VQFSRLTYTTTGSADNARDILIDGIK 462 (1070)
Q Consensus 437 i~~A~~~~~~~g~~e~Ar~iyekaL~ 462 (1070)
+.+|+.|. ..|+.+.||++++..+.
T Consensus 3 LdLA~ayi-e~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYI-EMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHH-HcCChHHHHHHHHHHHH
Confidence 46788887 99999999999999984
No 419
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=44.68 E-value=2.9e+02 Score=33.53 Aligned_cols=36 Identities=19% Similarity=0.264 Sum_probs=24.6
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 001486 439 FSRLTYTTTGSADNARDILIDGIKHVPNCKLLLEELI 475 (1070)
Q Consensus 439 ~A~~~~~~~g~~e~Ar~iyekaL~~~P~~~~lw~~y~ 475 (1070)
+++++. ..|+..++....++++...|....+...++
T Consensus 148 ~~~~~~-~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~ 183 (620)
T COG3914 148 LGRYLK-LLGRTAEAELALERAVDLLPKYPRVLGALM 183 (620)
T ss_pred HHHHHH-HhccHHHHHHHHHHHHHhhhhhhhhHhHHH
Confidence 455554 677788888888888888877765444443
No 420
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=44.35 E-value=1.9e+02 Score=33.60 Aligned_cols=51 Identities=14% Similarity=0.110 Sum_probs=34.4
Q ss_pred HHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHH
Q 001486 366 RYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYK 417 (1070)
Q Consensus 366 ~~e~~~g~~~eA~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~vye 417 (1070)
..+.+.++.+-|+.--.+.| .++|.+....+..|.+.+++..+.+|...+-
T Consensus 236 ~CYL~~rkpdlALnh~hrsI-~lnP~~frnHLrqAavfR~LeRy~eAarSam 286 (569)
T PF15015_consen 236 TCYLRMRKPDLALNHSHRSI-NLNPSYFRNHLRQAAVFRRLERYSEAARSAM 286 (569)
T ss_pred HhhhhcCCCchHHHHHhhhh-hcCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777777777 6677777777777777777666666554443
No 421
>PF12854 PPR_1: PPR repeat
Probab=43.89 E-value=41 Score=24.12 Aligned_cols=25 Identities=16% Similarity=0.044 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHhhCChhHHHHHHHH
Q 001486 324 EFWMRYVDFMESKGGREIASYALDR 348 (1070)
Q Consensus 324 ~lW~~ya~~l~~~g~~e~A~~il~r 348 (1070)
..|..++..+.+.|++++|..+|++
T Consensus 8 ~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 8 VTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 4455555666666666666666653
No 422
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=42.85 E-value=1.2e+02 Score=29.62 Aligned_cols=54 Identities=24% Similarity=0.238 Sum_probs=32.9
Q ss_pred HHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHH
Q 001486 299 AEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQI 352 (1070)
Q Consensus 299 ~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~ 352 (1070)
+-..|+.+....++....+..--++++.+.+|..|.+.|+..+|.+++.+|++.
T Consensus 96 lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 96 LVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 345666777777777766555556777777777777777777777777777763
No 423
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=42.73 E-value=37 Score=26.19 Aligned_cols=25 Identities=16% Similarity=0.084 Sum_probs=17.7
Q ss_pred HHHHHHHHhhCChhHHHHHHHHHHH
Q 001486 327 MRYVDFMESKGGREIASYALDRATQ 351 (1070)
Q Consensus 327 ~~ya~~l~~~g~~e~A~~il~rAl~ 351 (1070)
+.+|..|...|+.+.|+.+++..+.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4567777777777777777777664
No 424
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]
Probab=42.61 E-value=22 Score=45.42 Aligned_cols=9 Identities=33% Similarity=0.490 Sum_probs=3.7
Q ss_pred CCCCCCCCC
Q 001486 790 SSAPIQTRT 798 (1070)
Q Consensus 790 ~~~~~~~~~ 798 (1070)
.+|++++++
T Consensus 1505 ~~p~ipt~q 1513 (2131)
T KOG4369|consen 1505 IPPPIPTEQ 1513 (2131)
T ss_pred CCCCCcHHH
Confidence 334444433
No 425
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=42.17 E-value=36 Score=22.99 Aligned_cols=26 Identities=19% Similarity=0.227 Sum_probs=20.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001486 396 VTFKANMERRLGNFVAACDTYKEALE 421 (1070)
Q Consensus 396 w~~~a~le~~~g~~~~A~~vyekal~ 421 (1070)
|....+.+.+.|++++|.++|++..+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 66667777788888888888888765
No 426
>PRK15338 type III secretion system regulator InvE; Provisional
Probab=41.48 E-value=6.1e+02 Score=29.25 Aligned_cols=82 Identities=16% Similarity=0.033 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHcCCC-----CC-chHHHHHHHHHHHHcccH--H
Q 001486 91 KVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKD-----YL-CHTMWDKYIEFEISQQRW--S 162 (1070)
Q Consensus 91 ~A~~lferAL~~~P~s~~lW~~y~~~~~~~~~~~~~ar~vferAL~~~p~~-----~~-s~~lW~~yi~fe~~~~~~--~ 162 (1070)
....++..++..+|+..|+|+.+..++.+. .-.++.++.++.|+..+-.. .. ...+=.....|-. .+.. .
T Consensus 107 ~~~~ll~~arq~FpD~SDl~~aLreLl~r~-kL~~~~~~~le~al~~Le~e~~~K~ikAGINvAL~Ak~Fs~-~~~lsa~ 184 (372)
T PRK15338 107 ALEEFLRQARKLFPDPSDLVLVLRELLRRK-QLEEIVRKKLESLLKHVEEETDPKTLKAGINCALKARLFGK-ALSLKPG 184 (372)
T ss_pred CHHHHHHHHHHhCCCHHHHHHHHHHHHhCc-cCCHHHHHHHHHHHHHHHhhcCcHHHHhcCcHHHHHHHHHh-hcCCCHH
Confidence 344888889999999999999999887754 33344666676666544111 00 1122222333333 3333 7
Q ss_pred HHHHHHHHHHcc
Q 001486 163 SLAQIFVQTLRF 174 (1070)
Q Consensus 163 ~a~~iy~raL~~ 174 (1070)
.+|.+|+..|..
T Consensus 185 ~LR~lYR~Fl~~ 196 (372)
T PRK15338 185 LLRASYRQFLQS 196 (372)
T ss_pred HHHHHHHHHHhc
Confidence 789999999864
No 427
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]
Probab=41.23 E-value=18 Score=45.97 Aligned_cols=12 Identities=17% Similarity=0.213 Sum_probs=4.8
Q ss_pred CCCCCCcccccc
Q 001486 619 SPLPENHDIRSD 630 (1070)
Q Consensus 619 ~~~~~~~~~~~~ 630 (1070)
+|.+++.-+-.+
T Consensus 1200 ~p~~~P~~~vve 1211 (2131)
T KOG4369|consen 1200 SPMSMPFASVVE 1211 (2131)
T ss_pred CcCCCCcccccC
Confidence 344444444333
No 428
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=41.05 E-value=44 Score=29.41 Aligned_cols=18 Identities=17% Similarity=0.276 Sum_probs=15.0
Q ss_pred hcCCHHHHHHHHHHHHhh
Q 001486 446 TTGSADNARDILIDGIKH 463 (1070)
Q Consensus 446 ~~g~~e~Ar~iyekaL~~ 463 (1070)
+.|+.+.|...|++|+..
T Consensus 20 E~g~~e~Al~~Y~~gi~~ 37 (79)
T cd02679 20 EWGDKEQALAHYRKGLRE 37 (79)
T ss_pred hcCCHHHHHHHHHHHHHH
Confidence 568999999999999863
No 429
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.82 E-value=8.6e+02 Score=30.79 Aligned_cols=59 Identities=10% Similarity=0.015 Sum_probs=30.8
Q ss_pred cHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 001486 54 DIEMIGLVYDSFLAEFPL--CYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCS 115 (1070)
Q Consensus 54 ~~~~a~~vyeraL~~~P~--s~~lW~~ya~~e~~~~~~e~A~~lferAL~~~P~s~~lW~~y~~ 115 (1070)
.+++|..+-+.....-|. --++|+.|++++...+++++|-.+.-+.+ ..+...|.....
T Consensus 371 ~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~---gn~~~eWe~~V~ 431 (846)
T KOG2066|consen 371 KYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKML---GNNAAEWELWVF 431 (846)
T ss_pred HHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHh---cchHHHHHHHHH
Confidence 455554443333322222 23567777777776676666655544443 345555554443
No 430
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.70 E-value=5.4e+02 Score=31.72 Aligned_cols=73 Identities=11% Similarity=0.091 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHH
Q 001486 395 KVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKL 469 (1070)
Q Consensus 395 ~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~g~~e~Ar~iyekaL~~~P~~~~ 469 (1070)
+|...++.. +..+|..+...|+..+..+..+...-.+.++.-.++-||. ....+|+|.++|+.|=+..|.++-
T Consensus 357 LWn~A~~~F-~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL-~L~QLD~A~E~~~EAE~~d~~~~l 429 (872)
T KOG4814|consen 357 LWNTAKKLF-KMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYL-KLEQLDNAVEVYQEAEEVDRQSPL 429 (872)
T ss_pred HHHhhHHHH-HHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHhhccccHH
Confidence 455544433 3467888888888888776544444456777777777777 788888888888888888877663
No 431
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=38.37 E-value=3.3e+02 Score=32.97 Aligned_cols=67 Identities=15% Similarity=0.127 Sum_probs=28.6
Q ss_pred chHHHHHHHHHHHH--hCCHHHHHHHHHHHhhc----cChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 001486 357 LPVIHLFNARYKEQ--IGDTSAARAAFPESYID----SDSRFIEKVTFKANMERRLGNFVAACDTYKEALETA 423 (1070)
Q Consensus 357 ~p~i~~~~a~~e~~--~g~~~eA~~~~~~al~~----~~p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~ 423 (1070)
.|.....+|++++. ...-..+..+|.+|+.. ....++--|+..+.++.|.+++.+|+..+-+|-+-+
T Consensus 276 YPmALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~yR~~~~~eA~~~Wa~aa~Vi 348 (618)
T PF05053_consen 276 YPMALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYNNHHVYPYTYLGGYYYRHKRYREALRSWAEAADVI 348 (618)
T ss_dssp -HHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred CchhhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhcCCccccceehhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555443 11123345555555421 111122224444555555566666666665555543
No 432
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=38.28 E-value=1.9e+02 Score=35.37 Aligned_cols=78 Identities=18% Similarity=0.139 Sum_probs=45.5
Q ss_pred hCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhcCCH
Q 001486 371 IGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSA 450 (1070)
Q Consensus 371 ~g~~~eA~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~g~~ 450 (1070)
...++.++.+.+.-+ -....+....+..+.++...|..+.|-++|++.+.. .+. +.++.||+-+. ..|-.
T Consensus 21 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~--~~~~~~~~~~~-~~~~~ 90 (578)
T PRK15490 21 EKKLAQAVALIDSEL-PTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQ------NND--EARYEYARRLY-NTGLA 90 (578)
T ss_pred HhhHHHHHHHHHHhC-CccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHh------CCc--chHHHHHHHHH-hhhhh
Confidence 334455555544433 111223333445555666666777777777777766 222 67777777776 77777
Q ss_pred HHHHHHHH
Q 001486 451 DNARDILI 458 (1070)
Q Consensus 451 e~Ar~iye 458 (1070)
.+|+.++.
T Consensus 91 ~~~~~~~~ 98 (578)
T PRK15490 91 KDAQLILK 98 (578)
T ss_pred hHHHHHHH
Confidence 77777765
No 433
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=37.68 E-value=54 Score=28.48 Aligned_cols=32 Identities=16% Similarity=0.212 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Q 001486 409 FVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIK 462 (1070)
Q Consensus 409 ~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~g~~e~Ar~iyekaL~ 462 (1070)
+++|+.++.+|++. ...|++++|+.+|..||.
T Consensus 3 l~~Ai~lv~~Av~~----------------------D~~g~y~eA~~lY~~ale 34 (75)
T cd02684 3 LEKAIALVVQAVKK----------------------DQRGDAAAALSLYCSALQ 34 (75)
T ss_pred HHHHHHHHHHHHHH----------------------HHhccHHHHHHHHHHHHH
Confidence 45666666666654 278999999999999984
No 434
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=37.64 E-value=3.8e+02 Score=25.78 Aligned_cols=38 Identities=13% Similarity=0.249 Sum_probs=26.8
Q ss_pred HHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhC
Q 001486 300 EKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKG 337 (1070)
Q Consensus 300 ~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g 337 (1070)
...+....+...++.++...+.+..+...++..+.+.+
T Consensus 18 ~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~ 55 (140)
T smart00299 18 EKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD 55 (140)
T ss_pred HhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC
Confidence 34456777777888877776677777777777776553
No 435
>PF13041 PPR_2: PPR repeat family
Probab=37.52 E-value=1.2e+02 Score=23.56 Aligned_cols=26 Identities=4% Similarity=0.236 Sum_probs=12.7
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Q 001486 76 WRKYADHKARLCSIDKVVEVFERAVQ 101 (1070)
Q Consensus 76 W~~ya~~e~~~~~~e~A~~lferAL~ 101 (1070)
|..++..+.+.+++++|.++|++..+
T Consensus 6 yn~li~~~~~~~~~~~a~~l~~~M~~ 31 (50)
T PF13041_consen 6 YNTLISGYCKAGKFEEALKLFKEMKK 31 (50)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 44444444444555555555554444
No 436
>PF12854 PPR_1: PPR repeat
Probab=37.49 E-value=61 Score=23.21 Aligned_cols=26 Identities=12% Similarity=0.094 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001486 393 IEKVTFKANMERRLGNFVAACDTYKE 418 (1070)
Q Consensus 393 ~~~w~~~a~le~~~g~~~~A~~vyek 418 (1070)
.-.|..++..+.+.|++++|+++|++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 34567777777788888888888875
No 437
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=37.47 E-value=1.2e+02 Score=26.73 Aligned_cols=51 Identities=14% Similarity=0.122 Sum_probs=32.4
Q ss_pred CCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHc
Q 001486 87 CSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFV 138 (1070)
Q Consensus 87 ~~~e~A~~lferAL~~~P~s~~lW~~y~~~~~~~~~~~~~ar~vferAL~~~ 138 (1070)
++.++|+.+++++|+..+...+-|..+.-++.-. .+.-+-|..++.|+.-+
T Consensus 20 ~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~-~e~Gkyr~~L~fA~~Q~ 70 (80)
T PF10579_consen 20 NETQQALQKWRKALEKITDREDRFRVLGYLIQAH-MEWGKYREMLAFALQQL 70 (80)
T ss_pred chHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 4556777777788877777777776665554444 45555566666666543
No 438
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=37.34 E-value=97 Score=32.15 Aligned_cols=49 Identities=18% Similarity=0.110 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcC
Q 001486 55 IEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSAT 104 (1070)
Q Consensus 55 ~~~a~~vyeraL~~~P~s~~lW~~ya~~e~~~~~~e~A~~lferAL~~~P 104 (1070)
.+..+...++.++..| ++.+...|+..+...|+.++|+.+.+++...+|
T Consensus 127 l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 4455566677777776 556677777777777777777777777777777
No 439
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=37.28 E-value=73 Score=26.92 Aligned_cols=17 Identities=18% Similarity=0.421 Sum_probs=15.0
Q ss_pred hcCCHHHHHHHHHHHHh
Q 001486 446 TTGSADNARDILIDGIK 462 (1070)
Q Consensus 446 ~~g~~e~Ar~iyekaL~ 462 (1070)
..|++++|+..|..|+.
T Consensus 17 ~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 17 EAGNYEEALELYKEAIE 33 (69)
T ss_dssp HTTSHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 78999999999999974
No 440
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=37.23 E-value=2.4e+02 Score=30.60 Aligned_cols=44 Identities=20% Similarity=0.126 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHhhhc-----hHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 001486 341 IASYALDRATQIFLKRL-----PVIHLFNARYKEQIGDTSAARAAFPES 384 (1070)
Q Consensus 341 ~A~~il~rAl~~~~~~~-----p~i~~~~a~~e~~~g~~~eA~~~~~~a 384 (1070)
..+.++++|+..|.... ..+-+..|..+...|++++|.++|+.+
T Consensus 156 ~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 156 LIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 44555666655533211 123333344444455555555555544
No 441
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=37.09 E-value=1e+03 Score=30.67 Aligned_cols=96 Identities=5% Similarity=-0.042 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHH-HcCCCCCchHHHH
Q 001486 74 GYWRKYADHKARLCSIDKVVEVFERAVQSA---TYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALS-FVGKDYLCHTMWD 149 (1070)
Q Consensus 74 ~lW~~ya~~e~~~~~~e~A~~lferAL~~~---P~s~~lW~~y~~~~~~~~~~~~~ar~vferAL~-~~p~~~~s~~lW~ 149 (1070)
.++-.+++.....+..+.|..++++....+ ..+........+++.+. +....+.+++.+--. +.+.......+|.
T Consensus 492 g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~-~~l~dl~tiL~e~ks~a~n~~~~a~~~f~ 570 (1088)
T KOG4318|consen 492 GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRL-AILYDLSTILYEDKSSAENEPLVAIILFP 570 (1088)
T ss_pred hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHh-HHHHHHHHHHhhhhHHhhCCchHHHHHHH
Confidence 566666666666666777777776654321 11122333344444444 444455555544332 2232222456776
Q ss_pred HHHHHHHHcccHHHHHHHHHHH
Q 001486 150 KYIEFEISQQRWSSLAQIFVQT 171 (1070)
Q Consensus 150 ~yi~fe~~~~~~~~a~~iy~ra 171 (1070)
.|...-. .|..++++++++-.
T Consensus 571 ~lns~a~-agqqe~Lkkl~d~l 591 (1088)
T KOG4318|consen 571 LLNSGAP-AGQQEKLKKLADIL 591 (1088)
T ss_pred HHhhhhh-ccCHHHHHHHHHHH
Confidence 6655433 35566666665543
No 442
>KOG1938 consensus Protein with predicted involvement in meiosis (GSG1) [Cell cycle control, cell division, chromosome partitioning]
Probab=36.00 E-value=4.8e+02 Score=33.70 Aligned_cols=61 Identities=13% Similarity=0.072 Sum_probs=39.6
Q ss_pred HHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCC
Q 001486 404 RRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPN 466 (1070)
Q Consensus 404 ~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~g~~e~Ar~iyekaL~~~P~ 466 (1070)
...|....|..+|..|+..++...-......+++.++..+ .....|.|-..|++.+..++.
T Consensus 327 s~anqp~ha~R~y~~ai~v~~~~~ws~~edh~~f~i~~~y--~l~~~D~a~~~f~~~i~~~~k 387 (960)
T KOG1938|consen 327 SSANQPKHALRCYRQAIPVLKKPTWSFAEDHLYFTILHVY--LLCQEDDADEEFSKLIADCMK 387 (960)
T ss_pred ccCCChhHHHHHHHHHhhhcCCCCcchhHHhHHHhHHHhh--hhhcchhHHHHHHHHHhhhhh
Confidence 3456788999999999998643322222334555555532 355567788888888876664
No 443
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.90 E-value=1.6e+02 Score=35.78 Aligned_cols=82 Identities=18% Similarity=0.132 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhhhchHHHHHHHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHH
Q 001486 323 PEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANM 402 (1070)
Q Consensus 323 ~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~eA~~~~~~al~~~~p~~~~~w~~~a~l 402 (1070)
.+.....+.|+++.|-.+.|+++.- +|.-.+ ++..+.|+++.|..+..++ +...-|-.++++
T Consensus 614 k~~rt~va~Fle~~g~~e~AL~~s~---------D~d~rF---elal~lgrl~iA~~la~e~------~s~~Kw~~Lg~~ 675 (794)
T KOG0276|consen 614 KEIRTKVAHFLESQGMKEQALELST---------DPDQRF---ELALKLGRLDIAFDLAVEA------NSEVKWRQLGDA 675 (794)
T ss_pred hhhhhhHHhHhhhccchHhhhhcCC---------Chhhhh---hhhhhcCcHHHHHHHHHhh------cchHHHHHHHHH
Confidence 4566788899999986666554431 222221 2335689999998876654 234459999999
Q ss_pred HHHcCCHHHHHHHHHHHHHH
Q 001486 403 ERRLGNFVAACDTYKEALET 422 (1070)
Q Consensus 403 e~~~g~~~~A~~vyekal~~ 422 (1070)
....|++..|.++|.+|.+.
T Consensus 676 al~~~~l~lA~EC~~~a~d~ 695 (794)
T KOG0276|consen 676 ALSAGELPLASECFLRARDL 695 (794)
T ss_pred HhhcccchhHHHHHHhhcch
Confidence 99999999999999999776
No 444
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=35.83 E-value=52 Score=22.12 Aligned_cols=26 Identities=12% Similarity=0.358 Sum_probs=14.8
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Q 001486 76 WRKYADHKARLCSIDKVVEVFERAVQ 101 (1070)
Q Consensus 76 W~~ya~~e~~~~~~e~A~~lferAL~ 101 (1070)
|..+++.+.+.+++++|..+|++..+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 45555555555666666666655543
No 445
>KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only]
Probab=35.64 E-value=3.7e+02 Score=32.53 Aligned_cols=72 Identities=15% Similarity=0.116 Sum_probs=54.4
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhc--CCHHHHHHHHHHHHhhCCC
Q 001486 389 DSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTT--GSADNARDILIDGIKHVPN 466 (1070)
Q Consensus 389 ~p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~--g~~e~Ar~iyekaL~~~P~ 466 (1070)
.-+...+|..|+-...+.|++..||.-|.+|++.- ....++++..+..+.+ -. .++...|.+|+...+..|.
T Consensus 583 ~iD~f~aW~AWGlA~Lk~e~~aaAR~KFkqafklk-----gedipdvi~diin~ie-Ggpp~dVq~Vrem~dhlak~apt 656 (1141)
T KOG1811|consen 583 GIDTFGAWHAWGLACLKAENLAAAREKFKQAFKLK-----GEDIPDVIFDIINLIE-GGPPRDVQDVREMLDHLAKPAPT 656 (1141)
T ss_pred CCCcccHHHHHHHHHHHhhhHHHHHHHHHHHhCCC-----CCccchHHHHHHHhhc-CCCcchHHHHHHHHHHhccCCcc
Confidence 34567789999998899999999999999999972 3445677766655432 11 3678889999988887664
No 446
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=34.84 E-value=1.2e+03 Score=30.92 Aligned_cols=50 Identities=14% Similarity=0.153 Sum_probs=34.2
Q ss_pred HHHHH-HHHHHHhhCCC-cHHHHHHHHHHHHHcCCCcchhHHHHHHHHHhccCC
Q 001486 451 DNARD-ILIDGIKHVPN-CKLLLEELIKFTMVHGGRSHISIVDAVISNALYSRP 502 (1070)
Q Consensus 451 e~Ar~-iyekaL~~~P~-~~~lw~~y~~~e~~~g~~~~~~~ar~l~ekAl~~~~ 502 (1070)
++... +++.+-+..|- ...++..+..|+...++..++ +...||-|..-..
T Consensus 1083 ~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~Rka--atvMYEyamrl~s 1134 (1480)
T KOG4521|consen 1083 QEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKA--ATVMYEYAMRLES 1134 (1480)
T ss_pred HHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHH--HHHHHHHHHHhcc
Confidence 44455 67777776664 346777777888888888765 5677888875433
No 447
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=34.66 E-value=81 Score=23.53 Aligned_cols=30 Identities=23% Similarity=0.339 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 001486 394 EKVTFKANMERRLGNFVAACDTYKEALETA 423 (1070)
Q Consensus 394 ~~w~~~a~le~~~g~~~~A~~vyekal~~~ 423 (1070)
+++..++.+....++|+.|..=|++||++.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 356777887777888888888888888873
No 448
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=34.60 E-value=1.1e+02 Score=36.52 Aligned_cols=87 Identities=13% Similarity=-0.033 Sum_probs=56.0
Q ss_pred HHHHHHHHHHhhccChhhHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhcCCHH
Q 001486 375 SAARAAFPESYIDSDSRFIEKVTFKANMERRL---GNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSAD 451 (1070)
Q Consensus 375 ~eA~~~~~~al~~~~p~~~~~w~~~a~le~~~---g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~g~~e 451 (1070)
..|+..|.+++ ...|.....+.+++.++.+. |+.-.|..-...|+.+ ++...++|..+++++. ..+++.
T Consensus 391 ~~~i~~~s~a~-q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrl------n~s~~kah~~la~aL~-el~r~~ 462 (758)
T KOG1310|consen 391 SGAISHYSRAI-QYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRL------NPSIQKAHFRLARALN-ELTRYL 462 (758)
T ss_pred HHHHHHHHHHh-hhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccC------ChHHHHHHHHHHHHHH-HHhhHH
Confidence 34555666665 23344455555666555443 4444444444555555 5667788888888887 889999
Q ss_pred HHHHHHHHHHhhCCCcHH
Q 001486 452 NARDILIDGIKHVPNCKL 469 (1070)
Q Consensus 452 ~Ar~iyekaL~~~P~~~~ 469 (1070)
+|..+...+...+|.+..
T Consensus 463 eal~~~~alq~~~Ptd~a 480 (758)
T KOG1310|consen 463 EALSCHWALQMSFPTDVA 480 (758)
T ss_pred HhhhhHHHHhhcCchhhh
Confidence 999888777777885543
No 449
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=34.51 E-value=3.9e+02 Score=33.34 Aligned_cols=214 Identities=11% Similarity=0.051 Sum_probs=107.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhccCC------CCHHHHHHHHHHHHhh---CChhHHHHHHHHHHHHHhhhchHHHHHH
Q 001486 294 DYLSFAEKQGDFDWVVKLYERCLIPCA------DYPEFWMRYVDFMESK---GGREIASYALDRATQIFLKRLPVIHLFN 364 (1070)
Q Consensus 294 ~yi~~~~~~g~~~~a~~~yerAL~~~p------~~~~lW~~ya~~l~~~---g~~e~A~~il~rAl~~~~~~~p~i~~~~ 364 (1070)
.+..-+....+|+..+.+.+..-. .| ....+-+.||-.+.+. |+-++|..+.-.+++.--+..|+++|..
T Consensus 206 nlmlSyRDvQdY~amirLVe~Lk~-iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapDm~Cl~ 284 (1226)
T KOG4279|consen 206 NLMLSYRDVQDYDAMIRLVEDLKR-IPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPDMYCLC 284 (1226)
T ss_pred HHHhhhccccchHHHHHHHHHHHh-CcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCceeeee
Confidence 333334444566665555544322 12 1223334455445544 5568888888777775334457788877
Q ss_pred HHHHH---------HhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHH--HHhhccCCCc
Q 001486 365 ARYKE---------QIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLG-NFVAACDTYKEALET--AAEQRKFHTL 432 (1070)
Q Consensus 365 a~~e~---------~~g~~~eA~~~~~~al~~~~p~~~~~w~~~a~le~~~g-~~~~A~~vyekal~~--~~~~~~~~~~ 432 (1070)
++++. ..+..+-|.+.|++|. ++.|.. ..=++++.+++-.| .|+...++=.-++++ +-..+ ...
T Consensus 285 GRIYKDmF~~S~ytDa~s~~~a~~WyrkaF-eveP~~-~sGIN~atLL~aaG~~Fens~Elq~IgmkLn~LlgrK--G~l 360 (1226)
T KOG4279|consen 285 GRIYKDMFIASNYTDAESLNHAIEWYRKAF-EVEPLE-YSGINLATLLRAAGEHFENSLELQQIGMKLNSLLGRK--GAL 360 (1226)
T ss_pred chhhhhhhhccCCcchhhHHHHHHHHHHHh-ccCchh-hccccHHHHHHHhhhhccchHHHHHHHHHHHHHhhcc--chH
Confidence 76642 1334567889999998 565532 12234444444333 233333222222222 00111 111
Q ss_pred HH--HHHHHHHHHHh--hcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCCcchhHHHHHHHHHhccCCcccccC
Q 001486 433 PL--LYVQFSRLTYT--TTGSADNARDILIDGIKHVPNCKLLLEELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVF 508 (1070)
Q Consensus 433 ~~--l~i~~A~~~~~--~~g~~e~Ar~iyekaL~~~P~~~~lw~~y~~~e~~~g~~~~~~~ar~l~ekAl~~~~~~s~~l 508 (1070)
.+ -|-..|.++.- -.+|+.+|...-+..+++.|.. |..-..++- + .++.+..- ..-
T Consensus 361 eklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk~P~---WYLkS~men-------i----~l~~~fr~------t~e 420 (1226)
T KOG4279|consen 361 EKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKLKPPV---WYLKSTMEN-------I----LLINRFRP------TIE 420 (1226)
T ss_pred HHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhccCCce---ehHHHHHHH-------H----HHHHhcCC------CCC
Confidence 11 11122222210 3688899999888888887753 322222211 1 34444431 123
Q ss_pred ChhhHHHHHHHHHHHHHHhCCHHH
Q 001486 509 SLEDVEDISSLYLQFLDLCGTIHD 532 (1070)
Q Consensus 509 ~~~~~~~l~~~~~~~e~~~G~~~~ 532 (1070)
++...+..+..|++|..+.-..+.
T Consensus 421 ~p~~e~q~~~FWmdF~leat~td~ 444 (1226)
T KOG4279|consen 421 PPEKEKQQFLFWMDFFLEATETDT 444 (1226)
T ss_pred CCCcchHHHHHHHHHHHHhcCccc
Confidence 455667888888888865544433
No 450
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=34.48 E-value=2.2e+02 Score=27.98 Aligned_cols=55 Identities=13% Similarity=0.136 Sum_probs=31.5
Q ss_pred CcHHHHHHHHHHHHH-HCCCCHHHHHHHHHH-HHHhCCHHHHHHHHHHHHHhcCCCH
Q 001486 53 DDIEMIGLVYDSFLA-EFPLCYGYWRKYADH-KARLCSIDKVVEVFERAVQSATYSV 107 (1070)
Q Consensus 53 ~~~~~a~~vyeraL~-~~P~s~~lW~~ya~~-e~~~~~~e~A~~lferAL~~~P~s~ 107 (1070)
.++.+-+.++|..++ ..|..-.-...|+.+ +.+.++|++++.+....|...|.+.
T Consensus 49 ~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~ 105 (149)
T KOG3364|consen 49 EDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNR 105 (149)
T ss_pred HHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcH
Confidence 455556667777775 555544444444433 3455666666666666666665443
No 451
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=34.28 E-value=2.1e+02 Score=34.52 Aligned_cols=70 Identities=13% Similarity=0.076 Sum_probs=44.4
Q ss_pred hhHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Q 001486 391 RFIEKVTFKANMERRL--GNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIK 462 (1070)
Q Consensus 391 ~~~~~w~~~a~le~~~--g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~g~~e~Ar~iyekaL~ 462 (1070)
.++.+...++++++-. .+-..+..+|.+||........+ ...-=|..+|-+++ +.+++.+|+..|-.|-.
T Consensus 275 ~YPmALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~n-~HvYPYty~gg~~y-R~~~~~eA~~~Wa~aa~ 346 (618)
T PF05053_consen 275 RYPMALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYNN-HHVYPYTYLGGYYY-RHKRYREALRSWAEAAD 346 (618)
T ss_dssp T-HHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCTT---SHHHHHHHHHHH-HTT-HHHHHHHHHHHHH
T ss_pred hCchhhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhcC-CccccceehhhHHH-HHHHHHHHHHHHHHHHH
Confidence 4566777788887643 34567899999999875332211 11122455677776 99999999998888754
No 452
>PF13041 PPR_2: PPR repeat family
Probab=33.86 E-value=1.6e+02 Score=22.70 Aligned_cols=31 Identities=13% Similarity=0.188 Sum_probs=21.8
Q ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 001486 36 DFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAE 68 (1070)
Q Consensus 36 s~~~W~~li~~~~~~~~~~~~~a~~vyeraL~~ 68 (1070)
|+-.|..++..+-+. +++++|.++|+++.+.
T Consensus 2 ~~~~yn~li~~~~~~--~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 2 DVVTYNTLISGYCKA--GKFEEALKLFKEMKKR 32 (50)
T ss_pred chHHHHHHHHHHHHC--cCHHHHHHHHHHHHHc
Confidence 456677777766665 7777777777777764
No 453
>PF15080 DUF4547: Domain of unknown function (DUF4547)
Probab=33.81 E-value=4.7e+02 Score=26.13 Aligned_cols=94 Identities=14% Similarity=0.097 Sum_probs=54.3
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHhCC--------HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChhHHHHHHHHH
Q 001486 63 DSFLAEFPLCYGYWRKYADHKARLCS--------IDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRA 134 (1070)
Q Consensus 63 eraL~~~P~s~~lW~~ya~~e~~~~~--------~e~A~~lferAL~~~P~s~~lW~~y~~~~~~~~~~~~~ar~vferA 134 (1070)
.+.|..--.--++|.....+.+.... ++-..-+-.+.++..|.-++-.-.++..+... .+-+.+|.+|+.+
T Consensus 29 sktlAsQaaQdE~Wtavl~l~FtsmElnilYSYvievL~cLht~VlEkLPdL~r~LPTlASvLrrK-vkN~~Ir~vwesv 107 (196)
T PF15080_consen 29 SKTLASQAAQDEMWTAVLALKFTSMELNILYSYVIEVLICLHTRVLEKLPDLVRGLPTLASVLRRK-VKNKRIRVVWESV 107 (196)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhCcchHHHHHHHH-hhchHHHHHHHHH
Confidence 33444444445677777665422111 12222233456666666555555666666665 5667899999999
Q ss_pred HHHcCCCCCchHHHHHHHHHHHHccc
Q 001486 135 LSFVGKDYLCHTMWDKYIEFEISQQR 160 (1070)
Q Consensus 135 L~~~p~~~~s~~lW~~yi~fe~~~~~ 160 (1070)
|..+|..-. .+ ...+-|...+|+
T Consensus 108 Lee~GLqE~--dv-~aLCtFfiahgn 130 (196)
T PF15080_consen 108 LEECGLQEG--DV-TALCTFFIAHGN 130 (196)
T ss_pred HHHcCCCcc--cH-HHHHHHHHHhcc
Confidence 999998532 22 345566666654
No 454
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=33.58 E-value=82 Score=26.62 Aligned_cols=17 Identities=18% Similarity=0.358 Sum_probs=11.0
Q ss_pred HHhCCHHHHHHHHHHHh
Q 001486 369 EQIGDTSAARAAFPESY 385 (1070)
Q Consensus 369 ~~~g~~~eA~~~~~~al 385 (1070)
...|++++|..+|..++
T Consensus 16 D~~g~~~~A~~~Y~~ai 32 (69)
T PF04212_consen 16 DEAGNYEEALELYKEAI 32 (69)
T ss_dssp HHTTSHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 44666666666666665
No 455
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=33.16 E-value=65 Score=24.04 Aligned_cols=29 Identities=7% Similarity=0.103 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHhh
Q 001486 434 LLYVQFSRLTYTTTGSADNARDILIDGIKH 463 (1070)
Q Consensus 434 ~l~i~~A~~~~~~~g~~e~Ar~iyekaL~~ 463 (1070)
.+|..+|.+-. ..++++.|..=|+++|++
T Consensus 2 dv~~~Lgeisl-e~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISL-ENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHH-HhccHHHHHHHHHHHHHH
Confidence 46788888877 899999999999999874
No 456
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=32.91 E-value=1.2e+03 Score=30.15 Aligned_cols=98 Identities=10% Similarity=0.077 Sum_probs=60.9
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhC--CChhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHH
Q 001486 79 YADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTF--EDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEI 156 (1070)
Q Consensus 79 ya~~e~~~~~~e~A~~lferAL~~~P~s~~lW~~y~~~~~~~~--~~~~~ar~vferAL~~~p~~~~s~~lW~~yi~fe~ 156 (1070)
++..+.+.|+.++|-.++.++=. -.+..--..++.++.... .++-++...-+++-..-+.......-+..|+.|+.
T Consensus 713 LL~sy~~~g~~erA~glwnK~QV--~k~~~~l~~LAsIlr~~n~evdvPe~q~e~ekas~~~~~f~ttt~~~~~~a~~a~ 790 (1088)
T KOG4318|consen 713 LLQSYLEEGRIERASGLWNKDQV--SKSPMKLFHLASILRRMNEEVDVPEIQAETEKASELRTLFPTTTCYYEGYAFFAT 790 (1088)
T ss_pred HHHHHHhhhHHHHHHhHHhhCcC--CcchHHHHHHHHHHHhhchhccchhHHHHHHHHHhcccccccchHhhhhhHHHHh
Confidence 34445555667777777766652 234444455566555442 24556677777776655555545567778888887
Q ss_pred HcccHHHHHHHHHHHHc-cCCcC
Q 001486 157 SQQRWSSLAQIFVQTLR-FPSKK 178 (1070)
Q Consensus 157 ~~~~~~~a~~iy~raL~-~p~~~ 178 (1070)
..+..+.|.++|.|.-. .+...
T Consensus 791 q~~qkkaAkk~f~r~eeq~~v~t 813 (1088)
T KOG4318|consen 791 QTEQKKAAKKCFERLEEQLTVST 813 (1088)
T ss_pred hHHHHHHHHHHHHHHHHccCCCc
Confidence 76667788899988843 44443
No 457
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=32.19 E-value=1.4e+02 Score=26.15 Aligned_cols=17 Identities=24% Similarity=0.315 Sum_probs=11.3
Q ss_pred HHhCCHHHHHHHHHHHh
Q 001486 369 EQIGDTSAARAAFPESY 385 (1070)
Q Consensus 369 ~~~g~~~eA~~~~~~al 385 (1070)
...|++++|..+|..++
T Consensus 17 D~~g~y~eAl~~Y~~ai 33 (77)
T cd02683 17 DQEGRFQEALVCYQEGI 33 (77)
T ss_pred HHhccHHHHHHHHHHHH
Confidence 44667777777776666
No 458
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=32.15 E-value=1.8e+02 Score=25.71 Aligned_cols=39 Identities=8% Similarity=0.009 Sum_probs=31.0
Q ss_pred hcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCC
Q 001486 446 TTGSADNARDILIDGIKHVPNCKLLLEELIKFTMVHGGR 484 (1070)
Q Consensus 446 ~~g~~e~Ar~iyekaL~~~P~~~~lw~~y~~~e~~~g~~ 484 (1070)
..+..++|..+|+++|+..++..+-|..+.-+..-+.+.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~ 56 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEW 56 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHH
Confidence 788899999999999999999888777666555544433
No 459
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=31.90 E-value=1.3e+02 Score=22.04 Aligned_cols=21 Identities=14% Similarity=0.096 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHhCCHHHHHHH
Q 001486 75 YWRKYADHKARLCSIDKVVEV 95 (1070)
Q Consensus 75 lW~~ya~~e~~~~~~e~A~~l 95 (1070)
.|..++-.....|++++|+.+
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHH
Confidence 344444444445555555555
No 460
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=31.78 E-value=82 Score=21.56 Aligned_cols=27 Identities=22% Similarity=0.193 Sum_probs=20.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001486 396 VTFKANMERRLGNFVAACDTYKEALET 422 (1070)
Q Consensus 396 w~~~a~le~~~g~~~~A~~vyekal~~ 422 (1070)
|......+.+.|++++|..+|.+..+.
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~~ 29 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLER 29 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 556666677889999999999887653
No 461
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=31.60 E-value=76 Score=27.63 Aligned_cols=16 Identities=19% Similarity=0.351 Sum_probs=10.4
Q ss_pred HhCCHHHHHHHHHHHh
Q 001486 370 QIGDTSAARAAFPESY 385 (1070)
Q Consensus 370 ~~g~~~eA~~~~~~al 385 (1070)
..|++++|+.+|..++
T Consensus 18 ~~gny~eA~~lY~~al 33 (75)
T cd02680 18 EKGNAEEAIELYTEAV 33 (75)
T ss_pred HhhhHHHHHHHHHHHH
Confidence 4566666666666665
No 462
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=31.33 E-value=1.1e+02 Score=31.66 Aligned_cols=35 Identities=20% Similarity=0.317 Sum_probs=31.8
Q ss_pred CCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCC
Q 001486 430 HTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVP 465 (1070)
Q Consensus 430 ~~~~~l~i~~A~~~~~~~g~~e~Ar~iyekaL~~~P 465 (1070)
.-++.+|..++.++. ..|+.++|+....++...+|
T Consensus 141 ~P~~~~~~~~a~~l~-~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 141 RPDPNVYQRYALALA-LLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCC
Confidence 346889999999998 99999999999999999999
No 463
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=30.51 E-value=6.3e+02 Score=26.18 Aligned_cols=155 Identities=17% Similarity=0.136 Sum_probs=83.7
Q ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhh-----CChhHHHHHHHHHHHHHhhhch
Q 001486 284 LDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESK-----GGREIASYALDRATQIFLKRLP 358 (1070)
Q Consensus 284 ~~p~~~~~W~~yi~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~-----g~~e~A~~il~rAl~~~~~~~p 358 (1070)
..|....+.-.|++-. ..+|+.|..+|+.-...+. ++.--+.|+.++..- +++..|...|..|+.. +.+
T Consensus 32 K~Pe~C~lLgdYlEgi--~knF~~A~kv~K~nCden~-y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~---n~~ 105 (248)
T KOG4014|consen 32 KRPESCQLLGDYLEGI--QKNFQAAVKVFKKNCDENS-YPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDA---NIP 105 (248)
T ss_pred CCchHHHHHHHHHHHH--HHHHHHHHHHHHhcccccC-CcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhcc---CCH
Confidence 4565555555555443 4578899999988665433 445667787766432 2467888889888875 334
Q ss_pred HHHHHHHHHHH-----HhC--CHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCC
Q 001486 359 VIHLFNARYKE-----QIG--DTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHT 431 (1070)
Q Consensus 359 ~i~~~~a~~e~-----~~g--~~~eA~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~ 431 (1070)
..-...+.+.+ +.+ +..+|++.+.|+. ++.. ..+.+.+..++. |+.+++... . +.. .
T Consensus 106 ~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traC-dl~~--~~aCf~LS~m~~--~g~~k~~t~-------a-p~~---g 169 (248)
T KOG4014|consen 106 QACRYLGLLHWNGEKDRKADPDSEKAERYMTRAC-DLED--GEACFLLSTMYM--GGKEKFKTN-------A-PGE---G 169 (248)
T ss_pred HHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhc-cCCC--chHHHHHHHHHh--ccchhhccc-------C-CCC---C
Confidence 32222222221 222 3678999999987 4422 222222222322 333332111 1 111 1
Q ss_pred cHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhC
Q 001486 432 LPLLYVQFSRLTYTTTGSADNARDILIDGIKHV 464 (1070)
Q Consensus 432 ~~~l~i~~A~~~~~~~g~~e~Ar~iyekaL~~~ 464 (1070)
.+..- +.... ..+|.++|.++--+|.++.
T Consensus 170 ~p~~~---~~~~~-~~kDMdka~qfa~kACel~ 198 (248)
T KOG4014|consen 170 KPLDR---AELGS-LSKDMDKALQFAIKACELD 198 (248)
T ss_pred CCcch---hhhhh-hhHhHHHHHHHHHHHHhcC
Confidence 12111 11222 5678888998888888864
No 464
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=30.38 E-value=1.9e+02 Score=25.18 Aligned_cols=18 Identities=11% Similarity=0.134 Sum_probs=12.1
Q ss_pred HhCCHHHHHHHHHHHHHh
Q 001486 85 RLCSIDKVVEVFERAVQS 102 (1070)
Q Consensus 85 ~~~~~e~A~~lferAL~~ 102 (1070)
..|++++|..+|..||..
T Consensus 18 ~~g~y~eA~~lY~~ale~ 35 (75)
T cd02684 18 QRGDAAAALSLYCSALQY 35 (75)
T ss_pred HhccHHHHHHHHHHHHHH
Confidence 446677777777777664
No 465
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=29.85 E-value=91 Score=27.25 Aligned_cols=17 Identities=24% Similarity=0.274 Sum_probs=14.6
Q ss_pred hcCCHHHHHHHHHHHHh
Q 001486 446 TTGSADNARDILIDGIK 462 (1070)
Q Consensus 446 ~~g~~e~Ar~iyekaL~ 462 (1070)
..|++++|..+|..||.
T Consensus 18 ~~g~y~eAl~~Y~~aie 34 (77)
T cd02683 18 QEGRFQEALVCYQEGID 34 (77)
T ss_pred HhccHHHHHHHHHHHHH
Confidence 78899999999998874
No 466
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.49 E-value=6.2e+02 Score=32.79 Aligned_cols=33 Identities=18% Similarity=0.197 Sum_probs=26.5
Q ss_pred cHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCC
Q 001486 432 LPLLYVQFSRLTYTTTGSADNARDILIDGIKHVP 465 (1070)
Q Consensus 432 ~~~l~i~~A~~~~~~~g~~e~Ar~iyekaL~~~P 465 (1070)
...+|...|.++. +.|.-++|..+|-.-|....
T Consensus 683 ~~~l~ee~aill~-rl~khe~aL~Iyv~~L~d~~ 715 (877)
T KOG2063|consen 683 GDELYEERAILLG-RLGKHEEALHIYVHELDDID 715 (877)
T ss_pred chhHHHHHHHHHh-hhhhHHHHHHHHHHHhcchh
Confidence 3567888888887 99999999999988886433
No 467
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=29.43 E-value=1.2e+02 Score=33.95 Aligned_cols=42 Identities=21% Similarity=0.231 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHH
Q 001486 409 FVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLLLE 472 (1070)
Q Consensus 409 ~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~g~~e~Ar~iyekaL~~~P~~~~lw~ 472 (1070)
.++|+.+|++|+.. + ..|.+-+|+..|.+|++..|+...++.
T Consensus 16 ~kkA~~l~~~av~~---------------------E-q~G~l~dai~fYR~AlqI~~diEs~~r 57 (366)
T KOG2997|consen 16 AKKAIALYEKAVLK---------------------E-QDGSLYDAINFYRDALQIVPDIESKYR 57 (366)
T ss_pred HHHHHHHHHHHHHH---------------------h-hcCcHHHHHHHHHhhhcCCchHHHHHH
Confidence 36788888888876 3 789999999999999999998665544
No 468
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=29.00 E-value=1.8e+02 Score=31.76 Aligned_cols=59 Identities=10% Similarity=-0.063 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 001486 58 IGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSL 116 (1070)
Q Consensus 58 a~~vyeraL~~~P~s~~lW~~ya~~e~~~~~~e~A~~lferAL~~~P~s~~lW~~y~~~ 116 (1070)
|+..|.+|+...|.+...|..++-+....++.=.|.-.|-|++..--........+..+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~l 59 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKL 59 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 57889999999999999999999999888888888888889986532234444444443
No 469
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=28.60 E-value=3.9e+02 Score=31.23 Aligned_cols=46 Identities=13% Similarity=0.022 Sum_probs=31.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHH
Q 001486 396 VTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSR 441 (1070)
Q Consensus 396 w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~ 441 (1070)
++.-+.+....|.-++|.++++.|...+..-......+.+.+.||.
T Consensus 270 ~LLQGV~~yHqg~~deAye~le~a~~~l~elki~d~~lsllv~mGf 315 (568)
T KOG2561|consen 270 ELLQGVVAYHQGQRDEAYEALESAHAKLLELKINDETLSLLVGMGF 315 (568)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHeeccchHHHHHHHcCC
Confidence 3333444445688999999999999887665555555666666654
No 470
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=28.07 E-value=1.6e+02 Score=35.15 Aligned_cols=86 Identities=6% Similarity=-0.162 Sum_probs=64.6
Q ss_pred cHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChhHHHHH
Q 001486 54 DIEMIGLVYDSFLAEFPLCYGYWRKYADHKARL---CSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRL 130 (1070)
Q Consensus 54 ~~~~a~~vyeraL~~~P~s~~lW~~ya~~e~~~---~~~e~A~~lferAL~~~P~s~~lW~~y~~~~~~~~~~~~~ar~v 130 (1070)
....+...|-+++.+.|....+...+|..+++. ++.-.|..-...|+..+|-..+.|..+++++... +.+.+|...
T Consensus 389 ~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el-~r~~eal~~ 467 (758)
T KOG1310|consen 389 IVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNEL-TRYLEALSC 467 (758)
T ss_pred HHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHH-hhHHHhhhh
Confidence 345677889999999999999999999888776 3555566666788888899999999999988877 666666655
Q ss_pred HHHHHHHcCC
Q 001486 131 FKRALSFVGK 140 (1070)
Q Consensus 131 ferAL~~~p~ 140 (1070)
...+....|.
T Consensus 468 ~~alq~~~Pt 477 (758)
T KOG1310|consen 468 HWALQMSFPT 477 (758)
T ss_pred HHHHhhcCch
Confidence 5444444443
No 471
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=27.60 E-value=1.1e+02 Score=20.88 Aligned_cols=26 Identities=12% Similarity=0.391 Sum_probs=16.0
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Q 001486 76 WRKYADHKARLCSIDKVVEVFERAVQ 101 (1070)
Q Consensus 76 W~~ya~~e~~~~~~e~A~~lferAL~ 101 (1070)
|..++..+.+.+++++|..+|.+...
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 55555656666666666666666544
No 472
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=27.53 E-value=1e+02 Score=26.58 Aligned_cols=17 Identities=18% Similarity=0.370 Sum_probs=14.4
Q ss_pred hcCCHHHHHHHHHHHHh
Q 001486 446 TTGSADNARDILIDGIK 462 (1070)
Q Consensus 446 ~~g~~e~Ar~iyekaL~ 462 (1070)
..|++++|+.+|..|++
T Consensus 20 ~~g~~~eAl~~Y~~a~e 36 (77)
T smart00745 20 EAGDYEEALELYKKAIE 36 (77)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 68889999999988874
No 473
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=27.38 E-value=4.6e+02 Score=28.22 Aligned_cols=22 Identities=14% Similarity=-0.114 Sum_probs=19.1
Q ss_pred HHHHhhCChhHHHHHHHHHHHH
Q 001486 331 DFMESKGGREIASYALDRATQI 352 (1070)
Q Consensus 331 ~~l~~~g~~e~A~~il~rAl~~ 352 (1070)
.|+...|+++.|..+.+.||+.
T Consensus 91 vW~~D~Gd~~~AL~ia~yAI~~ 112 (230)
T PHA02537 91 VWRFDIGDFDGALEIAEYALEH 112 (230)
T ss_pred eeeeeccCHHHHHHHHHHHHHc
Confidence 3577889999999999999985
No 474
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=27.19 E-value=94 Score=27.04 Aligned_cols=34 Identities=21% Similarity=0.278 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhC
Q 001486 409 FVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHV 464 (1070)
Q Consensus 409 ~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~g~~e~Ar~iyekaL~~~ 464 (1070)
+.+|..++.+|++. . ..|++++|..+|..||..+
T Consensus 3 l~~A~~l~~~Ave~---------------------d-~~~~y~eA~~~Y~~~i~~~ 36 (75)
T cd02677 3 LEQAAELIRLALEK---------------------E-EEGDYEAAFEFYRAGVDLL 36 (75)
T ss_pred HHHHHHHHHHHHHH---------------------H-HHhhHHHHHHHHHHHHHHH
No 475
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=27.05 E-value=4.1e+02 Score=27.52 Aligned_cols=66 Identities=20% Similarity=0.129 Sum_probs=45.7
Q ss_pred CcHHHHHHHHHHHHHHCCCCHHHH---HH-----HHHHHHHhCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 001486 53 DDIEMIGLVYDSFLAEFPLCYGYW---RK-----YADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMS 119 (1070)
Q Consensus 53 ~~~~~a~~vyeraL~~~P~s~~lW---~~-----ya~~e~~~~~~e~A~~lferAL~~~P~s~~lW~~y~~~~~~ 119 (1070)
.+++.|.-+++..-+.++....+. .. .+-.+++.|.+++|.++|+|... .|.+...-..++.++.+
T Consensus 83 TPLESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~ 156 (200)
T cd00280 83 TPLESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIRE 156 (200)
T ss_pred ChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHc
Confidence 467788888888888887643222 22 23346778999999999999998 68888885555554443
No 476
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=26.15 E-value=2.9e+02 Score=30.36 Aligned_cols=83 Identities=14% Similarity=-0.047 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHh----cCCCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 001486 24 QGLEEFIAEGSLDFDEWTSLLSEIEN----SCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERA 99 (1070)
Q Consensus 24 ~~le~~l~~nP~s~~~W~~li~~~~~----~~~~~~~~a~~vyeraL~~~P~s~~lW~~ya~~e~~~~~~e~A~~lferA 99 (1070)
.++......--.+.....++.+.++. . ...+.|..+-++.+..+|.++.-|..-+-++...+.+.-|++-+++.
T Consensus 164 ael~~~~L~~a~~~~il~rll~~lk~~~~~e--~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~ 241 (269)
T COG2912 164 AELLPEDLKQASNREILSRLLRNLKAALLRE--LQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYF 241 (269)
T ss_pred hhhhhhhhhhccHHHHHHHHHHHHHHHHHHh--hchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHH
Q ss_pred HHhcCCCHH
Q 001486 100 VQSATYSVD 108 (1070)
Q Consensus 100 L~~~P~s~~ 108 (1070)
+..||....
T Consensus 242 ~~~~P~~~~ 250 (269)
T COG2912 242 VEHCPDDPI 250 (269)
T ss_pred HHhCCCchH
No 477
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=25.97 E-value=9.7e+02 Score=27.29 Aligned_cols=124 Identities=14% Similarity=0.128 Sum_probs=71.7
Q ss_pred CHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHH----hhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCC
Q 001486 408 NFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTY----TTTGSADNARDILIDGIKHVPNCKLLLEELIKFTMVHGG 483 (1070)
Q Consensus 408 ~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~----~~~g~~e~Ar~iyekaL~~~P~~~~lw~~y~~~e~~~g~ 483 (1070)
-++++..++++|+..- .+.-..+--..+.+.. ...-|+..-..+|.-....-|.-..-.+.-+-+-+..|-
T Consensus 271 lI~eg~all~rA~~~~-----~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apSPvV~LNRAVAla~~~Gp 345 (415)
T COG4941 271 LIDEGLALLDRALASR-----RPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPSPVVTLNRAVALAMREGP 345 (415)
T ss_pred HHHHHHHHHHHHHHcC-----CCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCCCeEeehHHHHHHHhhhH
Confidence 3577788888887762 1222222222222211 123456677777766666666554445555566666564
Q ss_pred CcchhHHHHHHHHHhccCCcccccCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Q 001486 484 RSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQHIKLFPHT 547 (1070)
Q Consensus 484 ~~~~~~ar~l~ekAl~~~~~~s~~l~~~~~~~l~~~~~~~e~~~G~~~~a~~~~~ra~~~~p~~ 547 (1070)
...+ .++|..... + .+ +.--..|-.-..|+...|..++++.+|+|++.+-+..
T Consensus 346 ~agL----a~ve~L~~~-~----~L--~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~ 398 (415)
T COG4941 346 AAGL----AMVEALLAR-P----RL--DGYHLYHAARADLLARLGRVEEARAAYDRAIALARNA 398 (415)
T ss_pred HhHH----HHHHHhhcc-c----cc--ccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCCh
Confidence 3332 333333321 0 11 1223467777899999999999999999999987664
No 478
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=25.81 E-value=4.5e+02 Score=22.95 Aligned_cols=17 Identities=29% Similarity=0.241 Sum_probs=9.8
Q ss_pred HHhCCHHHHHHHHHHHh
Q 001486 369 EQIGDTSAARAAFPESY 385 (1070)
Q Consensus 369 ~~~g~~~eA~~~~~~al 385 (1070)
...|++++|..+|..++
T Consensus 17 D~~g~y~eA~~~Y~~ai 33 (76)
T cd02681 17 DQEGRYSEAVFYYKEAA 33 (76)
T ss_pred HHccCHHHHHHHHHHHH
Confidence 34566666666666555
No 479
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=25.71 E-value=1.2e+02 Score=26.27 Aligned_cols=17 Identities=12% Similarity=0.309 Sum_probs=14.8
Q ss_pred hcCCHHHHHHHHHHHHh
Q 001486 446 TTGSADNARDILIDGIK 462 (1070)
Q Consensus 446 ~~g~~e~Ar~iyekaL~ 462 (1070)
..|++++|+.+|..|+.
T Consensus 18 ~~g~y~eA~~~Y~~aie 34 (75)
T cd02678 18 NAGNYEEALRLYQHALE 34 (75)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 78999999999999974
No 480
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=25.55 E-value=1e+03 Score=27.10 Aligned_cols=127 Identities=11% Similarity=0.104 Sum_probs=80.2
Q ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhhhc-----h
Q 001486 284 LDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRL-----P 358 (1070)
Q Consensus 284 ~~p~~~~~W~~yi~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~-----p 358 (1070)
..+..+.+..+.+.|..+.. +..+++.|. ..++.+|.+.+++.+|.......++-+.+-+ -
T Consensus 103 ~~~~~i~l~~~cIeWA~~ek-----RtFLRq~Le---------arli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLv 168 (411)
T KOG1463|consen 103 GTGDQIELCTECIEWAKREK-----RTFLRQSLE---------ARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLV 168 (411)
T ss_pred CcchHHHHHHHHHHHHHHHh-----HHHHHHHHH---------HHHHHHHHhhHHHHHHHHHHHHHHHHHHhccccccee
Confidence 34567778888888875443 334444443 4567778888888888888777666533211 1
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHhh-----ccChhhH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 001486 359 VIHLFNARYKEQIGDTSAARAAFPESYI-----DSDSRFI-EKVTFKANMERRLGNFVAACDTYKEALETAA 424 (1070)
Q Consensus 359 ~i~~~~a~~e~~~g~~~eA~~~~~~al~-----~~~p~~~-~~w~~~a~le~~~g~~~~A~~vyekal~~~~ 424 (1070)
.+++.-...+....++.+|+..+-.|.. .++|..- .+=+..+.+...-.+|..|..+|-+|.+-|.
T Consensus 169 ev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~ 240 (411)
T KOG1463|consen 169 EVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFD 240 (411)
T ss_pred eehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHcccc
Confidence 4566666666778888888888876642 2344221 1112233333334799999999999998764
No 481
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=25.41 E-value=4.2e+02 Score=29.50 Aligned_cols=64 Identities=11% Similarity=0.090 Sum_probs=47.8
Q ss_pred CCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHcCCCcchhHHHHHHHHH
Q 001486 430 HTLPLLYVQFSRLTYTTTGSADNARDILIDGIKH--VPNCKLLLEELIKFTMVHGGRSHISIVDAVISNA 497 (1070)
Q Consensus 430 ~~~~~l~i~~A~~~~~~~g~~e~Ar~iyekaL~~--~P~~~~lw~~y~~~e~~~g~~~~~~~ar~l~ekA 497 (1070)
.....+.+..-.++. +.+++.+-.++++.++.. ...+...|..+++.....||..- +|.++++.
T Consensus 199 ~l~~~vi~~Il~~L~-~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~---~~kiI~~G 264 (292)
T PF13929_consen 199 SLTRNVIISILEILA-ESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEV---MRKIIDDG 264 (292)
T ss_pred CCChhHHHHHHHHHH-hcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHH---HHHHhhCC
Confidence 344566666666777 899999999999999987 44577899999999999997643 34554443
No 482
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=25.38 E-value=1e+03 Score=26.91 Aligned_cols=68 Identities=15% Similarity=0.254 Sum_probs=43.1
Q ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHH--HHHHHhccCCCC---HHHHHHHHHHHHhhCChhHHHHHHHHHHHH
Q 001486 284 LDDIQLKNWHDYLSFAEKQGDFDWVVK--LYERCLIPCADY---PEFWMRYVDFMESKGGREIASYALDRATQI 352 (1070)
Q Consensus 284 ~~p~~~~~W~~yi~~~~~~g~~~~a~~--~yerAL~~~p~~---~~lW~~ya~~l~~~g~~e~A~~il~rAl~~ 352 (1070)
..|+.++...+|+.|.-.-|++..|-. .|-|++...++- ..+|-.+|.-. -.-++|.|++-+.|.-+.
T Consensus 124 f~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~lsalwGKlASEI-L~qnWd~A~edL~rLre~ 196 (432)
T KOG2758|consen 124 FTPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLSALWGKLASEI-LTQNWDGALEDLTRLREY 196 (432)
T ss_pred CCHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHH
Confidence 457778888888888877887765443 344555443332 45677776522 334578888777776665
No 483
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=25.37 E-value=1.5e+02 Score=20.29 Aligned_cols=28 Identities=18% Similarity=0.078 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001486 395 KVTFKANMERRLGNFVAACDTYKEALET 422 (1070)
Q Consensus 395 ~w~~~a~le~~~g~~~~A~~vyekal~~ 422 (1070)
.|...+....+.|+++.|..+|+...+.
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~ 30 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQ 30 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 4556666777788899998888887653
No 484
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=25.32 E-value=3.2e+02 Score=23.84 Aligned_cols=64 Identities=13% Similarity=0.179 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHhhhchHHHHHHHHHHHHhCCHHHHHHHHHHHhhccChhhHHH---HHHHHHHHHHcCCHHHHHHHH
Q 001486 340 EIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEK---VTFKANMERRLGNFVAACDTY 416 (1070)
Q Consensus 340 e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~eA~~~~~~al~~~~p~~~~~---w~~~a~le~~~g~~~~A~~vy 416 (1070)
+.|..+..+|++. ...|++.+|+..|..++ +.--..++. --....+..+...+-.=.+.+
T Consensus 4 ~~A~~~a~~AVe~----------------D~~gr~~eAi~~Y~~aI-e~L~q~~~~~pD~~~k~~yr~ki~eY~~Rae~L 66 (75)
T cd02682 4 EMARKYAINAVKA----------------EKEGNAEDAITNYKKAI-EVLSQIVKNYPDSPTRLIYEQMINEYKRRIEVL 66 (75)
T ss_pred HHHHHHHHHHHHH----------------HhcCCHHHHHHHHHHHH-HHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHH
Q 001486 417 KEAL 420 (1070)
Q Consensus 417 ekal 420 (1070)
++.+
T Consensus 67 k~~v 70 (75)
T cd02682 67 EKQN 70 (75)
T ss_pred HHHc
No 485
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=25.25 E-value=2.5e+02 Score=27.23 Aligned_cols=30 Identities=17% Similarity=0.140 Sum_probs=17.7
Q ss_pred cHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q 001486 54 DIEMIGLVYDSFLAEFPLCYGYWRKYADHK 83 (1070)
Q Consensus 54 ~~~~a~~vyeraL~~~P~s~~lW~~ya~~e 83 (1070)
+.+.|..+|+..++.||+.......++.-.
T Consensus 91 e~e~Ae~vY~el~~~~P~HLpaHla~i~~l 120 (139)
T PF12583_consen 91 EPENAEQVYEELLEAHPDHLPAHLAMIQNL 120 (139)
T ss_dssp -HHHHHHHHHHHHHH-TT-THHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCcchHHHHHHHHHcc
Confidence 446666777777777777766666666544
No 486
>PRK15338 type III secretion system regulator InvE; Provisional
Probab=25.12 E-value=1.1e+03 Score=27.23 Aligned_cols=45 Identities=11% Similarity=0.117 Sum_probs=31.3
Q ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHH
Q 001486 308 VVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQI 352 (1070)
Q Consensus 308 a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~ 352 (1070)
...++..++..+|+..++|..+..++.+..--++-++.++.|+..
T Consensus 108 ~~~ll~~arq~FpD~SDl~~aLreLl~r~kL~~~~~~~le~al~~ 152 (372)
T PRK15338 108 LEEFLRQARKLFPDPSDLVLVLRELLRRKQLEEIVRKKLESLLKH 152 (372)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhCccCCHHHHHHHHHHHHH
Confidence 337778888889999999999988776544334455555555553
No 487
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.36 E-value=8e+02 Score=25.33 Aligned_cols=119 Identities=15% Similarity=0.137 Sum_probs=74.9
Q ss_pred cCCHHHHHHHHHHHhcc-CCCCHHH-HHHHHHHHHhhCChhHHHHHHHHHHHHHhhhch-----HHHHHHHHHHHHhCCH
Q 001486 302 QGDFDWVVKLYERCLIP-CADYPEF-WMRYVDFMESKGGREIASYALDRATQIFLKRLP-----VIHLFNARYKEQIGDT 374 (1070)
Q Consensus 302 ~g~~~~a~~~yerAL~~-~p~~~~l-W~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p-----~i~~~~a~~e~~~g~~ 374 (1070)
.++.+++...|...-+. ...++.+ -+..+.++...|+...|...|+.+-.. ...| ...+..+.++..+|.|
T Consensus 71 ~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d--t~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 71 ENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD--TSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred cCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc--CCCcchhhHHHHHHHHHHHhccccH
Confidence 45677777777765544 3344443 566788888899999999999887653 1233 2445556677788988
Q ss_pred HHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001486 375 SAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALET 422 (1070)
Q Consensus 375 ~eA~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~vyekal~~ 422 (1070)
+......+-...+-+|--...--.++-.-.+.|++..|++.|+.....
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 876655554322222211112222333345679999999999987663
No 488
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=23.67 E-value=6.3e+02 Score=27.03 Aligned_cols=64 Identities=9% Similarity=-0.102 Sum_probs=53.6
Q ss_pred CcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 001486 53 DDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSL 116 (1070)
Q Consensus 53 ~~~~~a~~vyeraL~~~P~s~~lW~~ya~~e~~~~~~e~A~~lferAL~~~P~s~~lW~~y~~~ 116 (1070)
+.+.++....+.-++..|.+...-..|++++.-.|++++|..-++-+-...|....--..|-..
T Consensus 15 ~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~l 78 (273)
T COG4455 15 NSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHL 78 (273)
T ss_pred ccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHH
Confidence 7888999999999999999999999999999999999999998888888877765544444333
No 489
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=23.61 E-value=1.6e+03 Score=28.48 Aligned_cols=41 Identities=17% Similarity=0.165 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHH
Q 001486 305 FDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRAT 350 (1070)
Q Consensus 305 ~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl 350 (1070)
.++.+.+.+|.+..|-...++|..++..++-. ...++++|+
T Consensus 127 D~rL~~iv~rmi~kcl~d~e~~~aiGia~E~~-----rld~ie~Ai 167 (929)
T KOG2062|consen 127 DQRLRDIVERMIQKCLDDNEYKQAIGIAFETR-----RLDIIEEAI 167 (929)
T ss_pred CHHHHHHHHHHHHHhhhhhHHHHHHhHHhhhh-----hHHHHHHHh
Confidence 45888999999998888889999888766543 245666653
No 490
>KOG2690 consensus Uncharacterized conserved protein, contains BSD domain [Function unknown]
Probab=23.60 E-value=1.9e+02 Score=32.14 Aligned_cols=86 Identities=23% Similarity=0.279 Sum_probs=0.0
Q ss_pred HHHHHHHhhcccCCCCCCCChHHHHHHHHHHHHHHHcCCHH-------HHHHHHHHHhccCCCCHHHHHHHHHHHHhhCC
Q 001486 266 KINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFD-------WVVKLYERCLIPCADYPEFWMRYVDFMESKGG 338 (1070)
Q Consensus 266 ~~~~fE~ai~~~~~~~~~~~p~~~~~W~~yi~~~~~~g~~~-------~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~ 338 (1070)
.+..++-.-....+...|.++..++.|..-+.+..+.+.+. .++.+|++.+=..-.+.++|.+|..-......
T Consensus 144 e~~L~~lqsd~~ty~~EP~~~~~fe~W~s~f~lDeK~eEI~~LL~gnpdir~ly~~lVP~~VshetFW~RYFy~v~kleq 223 (331)
T KOG2690|consen 144 EAQLLELQSDENTYCDEPDDLEDFELWLSPFSLDEKTEEISELLEGNPDIRKLYEDLVPSEVSHETFWHRYFYKVEKLEQ 223 (331)
T ss_pred HHHHHHhhcCccccccCCCCHHHHHHHhhccCcccchHHHHHHHhcCccHHHHHHHhCcccccHHHHHHHHHHHHHHHhH
Q ss_pred hhHHH-HHHHHHHH
Q 001486 339 REIAS-YALDRATQ 351 (1070)
Q Consensus 339 ~e~A~-~il~rAl~ 351 (1070)
.+.+| .++.||+.
T Consensus 224 ~e~~r~~l~~rai~ 237 (331)
T KOG2690|consen 224 EEAKRKELLSRAIS 237 (331)
T ss_pred HHHHHHHHHHHHhh
No 491
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=22.41 E-value=1.3e+03 Score=26.96 Aligned_cols=131 Identities=15% Similarity=0.071 Sum_probs=0.0
Q ss_pred HHHHHHHHhhCChhHHHHHHHHHHHHHhhhchH------HHHHHHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHH
Q 001486 327 MRYVDFMESKGGREIASYALDRATQIFLKRLPV------IHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKA 400 (1070)
Q Consensus 327 ~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~------i~~~~a~~e~~~g~~~eA~~~~~~al~~~~p~~~~~w~~~a 400 (1070)
..+++.+...+++..|..+|+.++....+..-. ..+.-+..++..-++++|.+.+++ ......+..++
T Consensus 134 ~~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~------~~~~~~~~~~~ 207 (380)
T TIGR02710 134 QGYARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND------PLPERLALYQV 207 (380)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh------ccchhhhhhhh
Q ss_pred HHHHHcCCHHHHHHHHHHHHHH----HHhhccCCCcHHHHHHHHHHHHh-hcCCHHHHHHHHHHHHhh
Q 001486 401 NMERRLGNFVAACDTYKEALET----AAEQRKFHTLPLLYVQFSRLTYT-TTGSADNARDILIDGIKH 463 (1070)
Q Consensus 401 ~le~~~g~~~~A~~vyekal~~----~~~~~~~~~~~~l~i~~A~~~~~-~~g~~e~Ar~iyekaL~~ 463 (1070)
.++............+.-.+.. .......+..+-+.--++..+.. ..|+++.|...+-++++.
T Consensus 208 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~na~rr~~~~ry~da~~r~yR~~e~ 275 (380)
T TIGR02710 208 TSHDELEDVIKRNASILPEIIGSRNGRREAKRRPFLPLLGDLLANAERRATQGRYDDAAARLYRALEL 275 (380)
T ss_pred hhhhHHHHHHHhHHhhcchhhhccchhhhhcccchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
No 492
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=22.02 E-value=2.1e+03 Score=29.43 Aligned_cols=193 Identities=9% Similarity=-0.035 Sum_probs=0.0
Q ss_pred HHHHHHhhCChhHHHHHHHHHHHHHhhhchHHHHHHH--------HHHHHhC----------------------------
Q 001486 329 YVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNA--------RYKEQIG---------------------------- 372 (1070)
Q Consensus 329 ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a--------~~e~~~g---------------------------- 372 (1070)
.|.++...|.+.+|...|..|+.........+|.+.| .+....|
T Consensus 248 ~gd~~LlaG~~~dAl~~y~~a~~~~k~~~D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~~~~~~~s~~~~~ 327 (1185)
T PF08626_consen 248 LGDLYLLAGRWPDALKEYTEAIEILKSSNDYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPISSSTSSSSPRNSS 327 (1185)
T ss_pred hhhHHHHcCCHHHHHHHHHHHHHHHhhcCcHhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCCCCccCccCcccCC
Q ss_pred --------------------------------CHHHHHHHHHHHh---hccCh--hhHHHHHHHHHHHHHcC--------
Q 001486 373 --------------------------------DTSAARAAFPESY---IDSDS--RFIEKVTFKANMERRLG-------- 407 (1070)
Q Consensus 373 --------------------------------~~~eA~~~~~~al---~~~~p--~~~~~w~~~a~le~~~g-------- 407 (1070)
.+++|+.+|.++. .+..| -+.++.++++.+.....
T Consensus 328 ~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~~~~~~~~l~~i 407 (1185)
T PF08626_consen 328 SSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLVAQHLSDNLDHI 407 (1185)
T ss_pred ccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHHHhhcccchhhh
Q ss_pred ------------CHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 001486 408 ------------NFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLLLEELI 475 (1070)
Q Consensus 408 ------------~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~g~~e~Ar~iyekaL~~~P~~~~lw~~y~ 475 (1070)
.-.++.....+++..-...-.....-.+|..+|.+|. ..|-.-++-=+.+.++...-....-|.
T Consensus 408 V~~~~~~~~~~~~~~eI~~~l~~~~~~~l~~l~~~dqi~i~~~lA~vy~-~lG~~RK~AFvlR~l~~~~~~~l~~~~--- 483 (1185)
T PF08626_consen 408 VKRPLTPTPNISSRSEIAEFLFKAFPLQLKDLSVEDQIRIYSGLASVYG-SLGFHRKKAFVLRELAVQLVPGLIHWH--- 483 (1185)
T ss_pred hccccccccCCCCHHHHHHHHHHhhhhhhhhCCHHHHHHHHHHHHHHHH-hcchhHHHHHHHHHHHHHhccccCCcc---
Q ss_pred HHHHHcCCCcchhHHHHHHHHHhccCCcccccC------------------ChhhHHHHHHHHHHHHHHhCCHHHHHHHH
Q 001486 476 KFTMVHGGRSHISIVDAVISNALYSRPDVLKVF------------------SLEDVEDISSLYLQFLDLCGTIHDIRNAW 537 (1070)
Q Consensus 476 ~~e~~~g~~~~~~~ar~l~ekAl~~~~~~s~~l------------------~~~~~~~l~~~~~~~e~~~G~~~~a~~~~ 537 (1070)
...+.+++..+. .-++ -+.-...+....+.+.+..||...+.+..
T Consensus 484 ------------~s~~~lL~~~~~-----~Ygi~~~~~~~~~~~~~~~~~~W~~LQi~vL~~~I~~ae~l~D~~~~~~~~ 546 (1185)
T PF08626_consen 484 ------------QSYRSLLEELCK-----GYGISLDPESSSEDSSKGSQSNWPSLQIDVLKECINIAEALGDFAGVLRFS 546 (1185)
T ss_pred ------------hHHHHHHHHHhc-----cCcccCCccccccccccccccCCHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q ss_pred HHHHH
Q 001486 538 NQHIK 542 (1070)
Q Consensus 538 ~ra~~ 542 (1070)
...++
T Consensus 547 ~~LL~ 551 (1185)
T PF08626_consen 547 SLLLR 551 (1185)
T ss_pred HHHHH
No 493
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=22.01 E-value=1.5e+02 Score=32.33 Aligned_cols=62 Identities=11% Similarity=0.075 Sum_probs=0.0
Q ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhhhchHHHHHHHHHHHH
Q 001486 308 VVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQ 370 (1070)
Q Consensus 308 a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~ 370 (1070)
|+..|.+|+...|.....|..+|.+....|+.=.|...|-|++..-.|. +........+..+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf-~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPF-PSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB---HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHH
No 494
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=21.51 E-value=4.3e+02 Score=22.93 Aligned_cols=67 Identities=13% Similarity=0.077 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhCC
Q 001486 396 VTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVP 465 (1070)
Q Consensus 396 w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~g~~e~Ar~iyekaL~~~P 465 (1070)
.+..|.-....|++++|..+|..||+.+........++..--.+ -.+..+.+++|-+++..-|...+
T Consensus 9 l~~~Ave~d~~~~y~eA~~~Y~~~i~~~~~~~k~e~~~~~k~~i---r~K~~eYl~RAE~i~~~~l~~~~ 75 (75)
T cd02677 9 LIRLALEKEEEGDYEAAFEFYRAGVDLLLKGVQGDSSPERREAV---KRKIAEYLKRAEEILRLHLSRSL 75 (75)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCHHHHHHH---HHHHHHHHHHHHHHHHHhcccCC
No 495
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=21.34 E-value=1.2e+03 Score=26.34 Aligned_cols=174 Identities=12% Similarity=-0.065 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHcC--CHHHHHH-HHHHHhccCCCCHHHHHHHHHHHHhhCCh--hHHHHHHHHHHHHHhhhch---
Q 001486 287 IQLKNWHDYLSFAEKQG--DFDWVVK-LYERCLIPCADYPEFWMRYVDFMESKGGR--EIASYALDRATQIFLKRLP--- 358 (1070)
Q Consensus 287 ~~~~~W~~yi~~~~~~g--~~~~a~~-~yerAL~~~p~~~~lW~~ya~~l~~~g~~--e~A~~il~rAl~~~~~~~p--- 358 (1070)
..++.+.........+. +.-++.. +.+-++..+-.-..--..+..+-...+.. +...++..-.+....|..-
T Consensus 20 ~~~~qyr~~l~~~lt~~~~el~e~~k~~id~~~~~~vslvvsrqllsl~~~~l~~l~~e~~Kei~~~~l~~iq~rvisfe 99 (399)
T KOG1497|consen 20 DQAEQYRQLLAKVLTNNGMELLEALKRFIDAIVNENVSLVVSRQLLSLFDVELSILEDELRKEISHFTLEKIQPRVISFE 99 (399)
T ss_pred hHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcccccccHH
Q ss_pred ----HHHHHHHHHHHHhCCHHHHHHHHHHHhhccChhh--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q 001486 359 ----VIHLFNARYKEQIGDTSAARAAFPESYIDSDSRF--------IEKVTFKANMERRLGNFVAACDTYKEALETAAEQ 426 (1070)
Q Consensus 359 ----~i~~~~a~~e~~~g~~~eA~~~~~~al~~~~p~~--------~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~ 426 (1070)
.+.+.+|.++++.++|..|...+.-. ..+.+. +..+++.++++.+.++..+|.....++--+....
T Consensus 100 Eqv~~irl~LAsiYE~Eq~~~~aaq~L~~I--~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~ 177 (399)
T KOG1497|consen 100 EQVASIRLHLASIYEKEQNWRDAAQVLVGI--PLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAES 177 (399)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhcc--CcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcc
Q ss_pred ccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhh
Q 001486 427 RKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKH 463 (1070)
Q Consensus 427 ~~~~~~~~l~i~~A~~~~~~~g~~e~Ar~iyekaL~~ 463 (1070)
......-..-+-+|+++- ..+++-+|.+.|.+....
T Consensus 178 ~Ne~Lqie~kvc~ARvlD-~krkFlEAAqrYyels~~ 213 (399)
T KOG1497|consen 178 SNEQLQIEYKVCYARVLD-YKRKFLEAAQRYYELSQR 213 (399)
T ss_pred cCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
No 496
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=21.32 E-value=1e+03 Score=29.34 Aligned_cols=120 Identities=13% Similarity=0.049 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhhhchHHHHHHH
Q 001486 286 DIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNA 365 (1070)
Q Consensus 286 p~~~~~W~~yi~~~~~~g~~~~a~~~yerAL~~~p~~~~lW~~ya~~l~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a 365 (1070)
..++...-+-...+++....+.++.+.+.-+-......-..+.-|+++-..+..+.|-.+|++.+.- +..+.+..||
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 81 (578)
T PRK15490 5 EEKLAALGKTCLTLKQEKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQ---NNDEARYEYA 81 (578)
T ss_pred HHHHHHhhhHHHHHHHHhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHh---CCcchHHHHH
Q ss_pred HHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001486 366 RYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKE 418 (1070)
Q Consensus 366 ~~e~~~g~~~eA~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~~vyek 418 (1070)
.-+.+.|-..+|+.++. .+.++.-+.+.++. |++..-.+.|++
T Consensus 82 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~------~~~~~~~~~~~~ 124 (578)
T PRK15490 82 RRLYNTGLAKDAQLILK----KVSNGVQKKYNNYL------GKINKICDLLER 124 (578)
T ss_pred HHHHhhhhhhHHHHHHH----HhCccHhHHHHHHH------HHHHHHHHHHHH
No 497
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=21.22 E-value=7.4e+02 Score=23.81 Aligned_cols=103 Identities=11% Similarity=-0.013 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH----------HhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 001486 392 FIEKVTFKANMERRLGNFVAACDTYKEALETA----------AEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGI 461 (1070)
Q Consensus 392 ~~~~w~~~a~le~~~g~~~~A~~vyekal~~~----------~~~~~~~~~~~l~i~~A~~~~~~~g~~e~Ar~iyekaL 461 (1070)
+.++....+...-+.|+++....+.++....- .+.....-+.++..+.+..+. ..|++..|.++.+...
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~-~n~~i~~al~~vd~fs 79 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFG-YNGDIFSALKLVDFFS 79 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHH-hcccHHHHHHHHHHHH
Q ss_pred hhCCC--cHHHHHHHHHHHHHcCCCcchhHHHHHHH
Q 001486 462 KHVPN--CKLLLEELIKFTMVHGGRSHISIVDAVIS 495 (1070)
Q Consensus 462 ~~~P~--~~~lw~~y~~~e~~~g~~~~~~~ar~l~e 495 (1070)
+.+|- ...+|..+++.-...-+.+.-+.++....
T Consensus 80 ~~Y~I~i~~~~W~~Ll~W~~v~s~~~~~~~~~~~~~ 115 (126)
T PF12921_consen 80 RKYPIPIPKEFWRRLLEWAYVLSSKREDRAARYFLK 115 (126)
T ss_pred HHcCCCCCHHHHHHHHHHHHHhcCCcccccHHHHhh
No 498
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=21.10 E-value=1.7e+02 Score=25.24 Aligned_cols=34 Identities=15% Similarity=0.130 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHhhhchHHHHHHHHHHHHhCCHHHHHHHHHHHhhcc
Q 001486 339 REIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDS 388 (1070)
Q Consensus 339 ~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~eA~~~~~~al~~~ 388 (1070)
++.|..++.+|+.. .+.|++++|+.+|..+++.+
T Consensus 5 ~~~A~~li~~Av~~----------------d~~g~~~eAl~~Y~~a~e~l 38 (77)
T smart00745 5 LSKAKELISKALKA----------------DEAGDYEEALELYKKAIEYL 38 (77)
T ss_pred HHHHHHHHHHHHHH----------------HHcCCHHHHHHHHHHHHHHH
No 499
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.65 E-value=2.6e+02 Score=35.46 Aligned_cols=100 Identities=14% Similarity=0.013 Sum_probs=0.0
Q ss_pred HhhCChhHHHHHHHHHHHHHhhhchHHHHHHHHHHHHhCCHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHcCCHHHHH
Q 001486 334 ESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAAC 413 (1070)
Q Consensus 334 ~~~g~~e~A~~il~rAl~~~~~~~p~i~~~~a~~e~~~g~~~eA~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~~~A~ 413 (1070)
.+.|+++.|.+...+.= ++..|..++.--.+.|+..-|..+|++.-. |-++.-+|.-.|+.++.+
T Consensus 654 Le~gnle~ale~akkld------d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~ 718 (1202)
T KOG0292|consen 654 LECGNLEVALEAAKKLD------DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLS 718 (1202)
T ss_pred hhcCCHHHHHHHHHhcC------cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHH
Q ss_pred HHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 001486 414 DTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDG 460 (1070)
Q Consensus 414 ~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~g~~e~Ar~iyeka 460 (1070)
++-+.|-.. ..........+ -+|++++-++|++.|
T Consensus 719 Km~~iae~r------~D~~~~~qnal------Yl~dv~ervkIl~n~ 753 (1202)
T KOG0292|consen 719 KMMKIAEIR------NDATGQFQNAL------YLGDVKERVKILENG 753 (1202)
T ss_pred HHHHHHHhh------hhhHHHHHHHH------HhccHHHHHHHHHhc
No 500
>KOG0260 consensus RNA polymerase II, large subunit [Transcription]
Probab=20.64 E-value=1.3e+03 Score=30.78 Aligned_cols=129 Identities=20% Similarity=0.199 Sum_probs=0.0
Q ss_pred CCcccCccCCCCCCCCCCCccCCCcccc------CCCCccccccccccccCccCccCCCccccccccCCCCCCCCCCCCC
Q 001486 712 PLSLEGLSLDPGGNDSPGSLCATSHECE------APQKTNFSHESMLKSEAPRETSLSDGSVLGASQNNNGSHFAPSSMG 785 (1070)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 785 (1070)
|-|++--.-.|.-|..-.+-.+++--+- -|+.+..|-++ .|=.+..-|-|+ |--+| +|+|+|
T Consensus 1461 ptsp~ys~tsp~~sptspsysptspsysptspsysptspsyspts--psysptspsysp-------tspsy---sptsps 1528 (1605)
T KOG0260|consen 1461 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS--PSYSPTSPSYSP-------TSPSY---SPTSPS 1528 (1605)
T ss_pred CCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCC-------CCCCC---CCCCCC
Q ss_pred CCCCCCCCCCCCCC----CCCCCCCCCCC-CCCcCCCCCCCCCCCCCcccCCCCcccccCCccCCCCCCccc
Q 001486 786 TQASSSAPIQTRTV----SPSSSASHQNF-IPEAHSHPQTPANSGRNWHEQQNPDRVHRDLRFGYRGHSHKR 852 (1070)
Q Consensus 786 ~~~~~~~~~~~~~~----~p~s~~~~~~~-~p~~~~~p~~~~n~~~n~~~~~~~~~~~~~p~~~~~~~~~~~ 852 (1070)
=+.|+|...|+... ||+.|...+.. +.++..+|...+-+.....-...+.=..-.|+|.+...+..+
T Consensus 1529 ysptspsysptspsysptspsysptspsysptsp~ysptspsysptspsys~~~~ysp~sp~ysptsp~ysp 1600 (1605)
T KOG0260|consen 1529 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSTSPSYSPTSPSYSPTSPSYSP 1600 (1605)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCC
Done!