Query 001486
Match_columns 1070
No_of_seqs 513 out of 3261
Neff 8.1
Searched_HMMs 29240
Date Tue Mar 26 16:08:50 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001486.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_788-792//hhsearch_pdb/001486hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4e6h_A MRNA 3'-END-processing 1.0 1 1 474.4 53.1 466 20-551 49-578 (679)
2 2ooe_A Cleavage stimulation fa 1.0 1 1 411.4 50.5 476 25-578 1-516 (530)
3 2uy1_A Cleavage stimulation fa 1.0 1 1 334.7 41.0 421 53-578 8-453 (493)
4 4e6h_A MRNA 3'-END-processing 1.0 1 1 328.3 40.1 421 22-503 85-573 (679)
5 2ooe_A Cleavage stimulation fa 1.0 1 1 296.4 40.4 413 21-502 30-494 (530)
6 2uy1_A Cleavage stimulation fa 1.0 1 1 287.8 21.8 422 25-547 17-455 (493)
7 1w3b_A UDP-N-acetylglucosamine 1.0 1 1 240.1 48.2 356 53-500 13-368 (388)
8 1w3b_A UDP-N-acetylglucosamine 1.0 1 1 236.5 43.5 369 23-482 19-387 (388)
9 2xpi_A Anaphase-promoting comp 1.0 1 1 233.2 49.3 471 31-547 77-583 (597)
10 2ond_A Cleavage stimulation fa 1.0 1 1 229.4 25.7 250 285-549 4-276 (308)
No 1
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=1.00 E-value=1 Score=474.36 Aligned_cols=466 Identities=14% Similarity=0.196 Sum_probs=391.6
Q ss_pred CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC---HHHHHHHH
Q ss_conf 853677999999489999999999999992199808999999999999899997899999999998089---88999999
Q 001486 20 GFGKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCS---IDKVVEVF 96 (1070)
Q Consensus 20 ~~~~~~~e~ai~~nP~s~~~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P~s~~lW~~ya~~e~~~~~---~e~A~~if 96 (1070)
.+....||++|..||.|+..|+.|+++++.. +.++.++.+|+|+|..+|.++++|+.|++++.+.++ ++.++.+|
T Consensus 49 ~d~i~~lE~~l~~np~d~~~W~~yi~~~~~~--~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lf 126 (679)
T 4e6h_A 49 SDVIGKLNDMIEEQPTDIFLYVKLLKHHVSL--KQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVL 126 (679)
T ss_dssp SCHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 7899999999997868899999999999861--82999999999999988998799999999998637850599999999
Q ss_pred HHHHHHCC--CCHHHHHHHHHHHHHHCCCH--------HHHHHHHHHHHHHCCC-CCCCHHHHHHHHHHHHH--------
Q ss_conf 99998227--99999999999998407992--------5899999999997099-88826899999999998--------
Q 001486 97 ERAVQSAT--YSVDVWFHYCSLSMSTFEDP--------NDVRRLFKRALSFVGK-DYLCHTMWDKYIEFEIS-------- 157 (1070)
Q Consensus 97 erAL~~~P--~s~~lW~~y~~~~~~~~~~~--------~~ar~vferAL~~~p~-~~~s~~iW~~yi~fe~~-------- 157 (1070)
+|||..+| .+++||..|+.|+... ++. +.+|++|++|+..+|. ++.+..||..|++|+.+
T Consensus 127 eRal~~~~~~~sv~LW~~Yl~f~~~~-~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~e 205 (679)
T 4e6h_A 127 ARCLSKELGNNDLSLWLSYITYVRKK-NDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFE 205 (679)
T ss_dssp HHHTCSSSCCCCHHHHHHHHHHHHHH-SCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHH
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHH-CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCHH
T ss_conf 99987547789899999999999985-54345650138999999999999819665565399999999998635457677
Q ss_pred -CCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf -1468999999999870689688999999999997778876420004578999975217766665630235788632186
Q 001486 158 -QQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDP 236 (1070)
Q Consensus 158 -~~~~~~a~~iy~r~L~~p~~~~~~~~~~~~~~~~~~~eal~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~l~~~~~~ 236 (1070)
.+.++.++++|.|+|.+|..++..+|..|..|...++..+. ...+.
T Consensus 206 eq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a----------------------------~~~~~----- 252 (679)
T 4e6h_A 206 EQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTA----------------------------RRHIG----- 252 (679)
T ss_dssp HHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTH----------------------------HHHHH-----
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHH----------------------------HHHHH-----
T ss_conf 876899999999999828637799999999999973583118----------------------------89998-----
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC--------CC----CCHHHHHHHHHHHHHHHHCC-
Q ss_conf 335787787889999999999999999999999998621357778--------98----99577998999999999709-
Q 001486 237 SVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHV--------KP----LDDIQLKNWHDYLSFAEKQG- 303 (1070)
Q Consensus 237 ~~~~~~a~~~~~~~~~~~~~y~~a~~~~~~~~~fE~~i~~~~~~~--------~~----~~p~~~~~W~~y~~~~~~~g- 303 (1070)
.....|+.|+..+..+..++.++.+.+... .+ .....+.+|.+|+.|++.++
T Consensus 253 ---------------e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~ 317 (679)
T 4e6h_A 253 ---------------ELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKL 317 (679)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTT
T ss_pred ---------------HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf ---------------73377788999999999999867511665432000025899866489999999999999984876
Q ss_pred ------CHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHH-HHHHHHHHHHHHHCHHHHHHHHHHHHHHCCHHH
Q ss_conf ------9889999999984259999999999999999508956999-999999998830000899999999999199999
Q 001486 304 ------DFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIAS-YALDRATQIFLKRLPVIHLFNARYKEQIGDTSA 376 (1070)
Q Consensus 304 ------~~~~a~~~yerAl~~~p~~~~lW~~ya~~le~~g~~e~A~-~ilerAi~~~~~~~p~i~~~~a~~e~~~g~~ee 376 (1070)
..++++.+|++||..+|.++++|+.||.|++..|+.++|+ .+|++|+.. .|....+|+.++.++++.|++++
T Consensus 318 ~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~ 396 (679)
T 4e6h_A 318 ELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPE 396 (679)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHCCHHH
T ss_conf 66410168999999999998769977999999999986286789999999999986-89877999999999998488999
Q ss_pred HHHHHHHHHHCC----------CH-----------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf 999999876401----------83-----------459999999999998199999999999999998731047883999
Q 001486 377 ARAAFPESYIDS----------DS-----------RFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLL 435 (1070)
Q Consensus 377 A~~~~~~al~~~----------~p-----------~~~~~w~~~a~le~~~g~~e~A~~iyekal~~~~~~~~~~~~~~l 435 (1070)
|+.+|++++..+ .| ....+|+.++.++++.|+++.|+.+|++|++.. ....+.+
T Consensus 397 aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~-----~~~~~~l 471 (679)
T 4e6h_A 397 IETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLK-----KLVTPDI 471 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTG-----GGSCTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-----CCCCHHH
T ss_conf 99999999988787766664116741245554113369999999999987088899999999999736-----8988699
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHH
Q ss_conf 99999999751099899999999999619990999999999999819986044799999997504986333699331999
Q 001486 436 YVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLLLEELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVED 515 (1070)
Q Consensus 436 ~l~~A~~l~~~~g~~e~Ar~iyekaL~~~P~~~~lw~~y~~~e~~~g~~~~~~~ar~llekAl~~~~~~~~~~~~~~~~~ 515 (1070)
|+.+|.+++...++.+.||++|++||+.+|++..+|..|++|+...|+.+ ++|.+|++|+...+ +++....
T Consensus 472 yi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~---~AR~lferal~~~~------~~~~~~~ 542 (679)
T 4e6h_A 472 YLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEES---QVKSLFESSIDKIS------DSHLLKM 542 (679)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHH---HHHHHHHHHTTTSS------STTHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHH---HHHHHHHHHHHHCC------CHHHHHH
T ss_conf 99999999996898899999999999878995399999999998089778---99999999987168------8789999
Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 999999999980999999999999998199975443
Q 001486 516 ISSLYLQFLDLCGTIHDIRNAWNQHIKLFPHTVRTA 551 (1070)
Q Consensus 516 l~~~y~~~e~~~G~~~~a~~~~~ra~~~~p~~~~~~ 551 (1070)
||..|++||..+|+.+.+.++++|+.+++|++....
T Consensus 543 lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~~ 578 (679)
T 4e6h_A 543 IFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNKLE 578 (679)
T ss_dssp HHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHH
T ss_conf 999999999986999999999999998689973899
No 2
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=1.00 E-value=1 Score=411.41 Aligned_cols=476 Identities=19% Similarity=0.316 Sum_probs=393.4
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCC
Q ss_conf 79999994899999999999999921998089999999999998999978999999999980898899999999998227
Q 001486 25 GLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSAT 104 (1070)
Q Consensus 25 ~~e~ai~~nP~s~~~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P~s~~lW~~ya~~e~~~~~~e~A~~iferAL~~~P 104 (1070)
.|+++|..+|.|+.+|..++.+ ... +++++++.+|+++++.+|.++.+|+.|+.++.+.+++++|+.+|+|||..+|
T Consensus 1 ~le~al~~~P~~~~~w~~l~~~-~~~--~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p 77 (530)
T 2ooe_A 1 MAEKKLEENPYDLDAWSILIRE-AQN--QPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL 77 (530)
T ss_dssp CHHHHHHHCTTCHHHHHHHHHH-HHS--SCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC
T ss_pred CHHHHHHHCCCCHHHHHHHHHH-HHH--CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC
T ss_conf 9366865397779999999999-984--8799999999999987899799999999999866988999999999872289
Q ss_pred CCHHHHHHHHHHHHHHCCCHHHHH----HHHHHHHHHCCCCCCCHHHHHHHHHHHHH---------CCCHHHHHHHHHHH
Q ss_conf 999999999999984079925899----99999999709988826899999999998---------14689999999998
Q 001486 105 YSVDVWFHYCSLSMSTFEDPNDVR----RLFKRALSFVGKDYLCHTMWDKYIEFEIS---------QQRWSSLAQIFVQT 171 (1070)
Q Consensus 105 ~s~~lW~~y~~~~~~~~~~~~~ar----~vferAL~~~p~~~~s~~iW~~yi~fe~~---------~~~~~~a~~iy~r~ 171 (1070)
++++|+.|+.++....++++.++ ++|++|+..+|.++.+..+|..|+.|+.. .+.++.++++|.++
T Consensus 78 -~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a 156 (530)
T 2ooe_A 78 -HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 156 (530)
T ss_dssp -CHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf -8489999999999974650468999999999999977888660799999999996077765378773799999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 70689688999999999997778876420004578999975217766665630235788632186335787787889999
Q 001486 172 LRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRF 251 (1070)
Q Consensus 172 L~~p~~~~~~~~~~~~~~~~~~~eal~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~l~~~~~~~~~~~~a~~~~~~~~ 251 (1070)
+..|......+|..|..+...++..+. ..++. +
T Consensus 157 l~~P~~~~~~~~~~~~~~e~~~~~~~~-----------~~~l~--------------------~---------------- 189 (530)
T 2ooe_A 157 CVNPMINIEQLWRDYNKYEEGINIHLA-----------KKMIE--------------------D---------------- 189 (530)
T ss_dssp TTSCCTTHHHHHHHHHHHHHHHCHHHH-----------HHHHH--------------------T----------------
T ss_pred HHCHHHHHHHHHHHHHHHHHHHCHHHH-----------HHHHH--------------------H----------------
T ss_conf 966663599999999999972166679-----------99999--------------------8----------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC----CHHHHHHHHHHHHHHHHCC----CH----HHHHHHHHHHHCCC
Q ss_conf 999999999999999999998621357778989----9577998999999999709----98----89999999984259
Q 001486 252 IGEQIYKEASQLDEKINCFENLIRRPYFHVKPL----DDIQLKNWHDYLSFAEKQG----DF----DWVVKLYERCLIPC 319 (1070)
Q Consensus 252 ~~~~~y~~a~~~~~~~~~fE~~i~~~~~~~~~~----~p~~~~~W~~y~~~~~~~g----~~----~~a~~~yerAl~~~ 319 (1070)
....|..|+..+..+..++.++++.+..+.+. ......+|..|+.++...+ +. .+++.+|++|+..+
T Consensus 190 -~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~ 268 (530)
T 2ooe_A 190 -RSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL 268 (530)
T ss_dssp -THHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf -5288887999999999999974203455899998657999999999999987097557751268899999999999857
Q ss_pred CCCHHHHHHHHHHHHH-------HCCHH-------HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf 9999999999999995-------08956-------999999999998830000899999999999199999999999876
Q 001486 320 ADYPEFWMRYVDFMES-------KGGRE-------IASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESY 385 (1070)
Q Consensus 320 p~~~~lW~~ya~~le~-------~g~~e-------~A~~ilerAi~~~~~~~p~i~~~~a~~e~~~g~~eeA~~~~~~al 385 (1070)
|.+.++|+.|+.++.. .|+++ +|+.+|++|+....|+.+.+|+.++.++.+.|++++|+.+|++++
T Consensus 269 p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al 348 (530)
T 2ooe_A 269 GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLL 348 (530)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 89779999999999983546553265122121149999999999998686657999999999986388999999999985
Q ss_pred HCCCHHH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Q ss_conf 4018345-999999999999819999999999999999873104788399999999999751099899999999999619
Q 001486 386 IDSDSRF-IEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHV 464 (1070)
Q Consensus 386 ~~~~p~~-~~~w~~~a~le~~~g~~e~A~~iyekal~~~~~~~~~~~~~~l~l~~A~~l~~~~g~~e~Ar~iyekaL~~~ 464 (1070)
...|.. ..+|+.++.++++.|++++|+.+|++|++. .+..+.+|+..+.+++...|++++|+++|++|++.+
T Consensus 349 -~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~------~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~ 421 (530)
T 2ooe_A 349 -AIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED------ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY 421 (530)
T ss_dssp -HSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC------TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred -CCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHC------CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
T ss_conf -7645683099999999999806889999999999735------577508999999999988078359999999999878
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC
Q ss_conf 99099999999999981998604479999999750498633369933199999999999998099999999999999819
Q 001486 465 PNCKLLLEELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQHIKLF 544 (1070)
Q Consensus 465 P~~~~lw~~y~~~e~~~g~~~~~~~ar~llekAl~~~~~~~~~~~~~~~~~l~~~y~~~e~~~G~~~~a~~~~~ra~~~~ 544 (1070)
|++..+|..|+.++...|+.++ +|.+|++|+..++ .+++....+|..|++||..+|+.+.+.+++.|+++.+
T Consensus 422 p~~~~~~~~~~~~~~~~g~~~~---Ar~~~~~al~~~~-----~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~ 493 (530)
T 2ooe_A 422 GDIPEYVLAYIDYLSHLNEDNN---TRVLFERVLTSGS-----LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAF 493 (530)
T ss_dssp TTCHHHHHHHHHHHTTTTCHHH---HHHHHHHHHHSCC-----SCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHCCCHHH---HHHHHHHHHHCCC-----CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
T ss_conf 9978999999999986798866---9999999984157-----9878899999999999998299999999999999877
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHCCC
Q ss_conf 9975443457531003345653112225654089
Q 001486 545 PHTVRTAYECPGRETKSLRAFIRGKRESNVASLP 578 (1070)
Q Consensus 545 p~~~~~~~~~~~~k~~~~~~~~~~~~~~~i~~lp 578 (1070)
|+...- .. .. .-.+|.+|...+|
T Consensus 494 p~~~~~--------~~-~~--~~~~r~~~~~~~~ 516 (530)
T 2ooe_A 494 REEYEG--------KE-TA--LLVDRYKFMDLYP 516 (530)
T ss_dssp HHHHTT--------CH-HH--HHGGGTCBTTBCS
T ss_pred CHHCCC--------CH-HH--HHHHHHHHCCCCC
T ss_conf 311158--------54-89--9999987426678
No 3
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=1.00 E-value=1 Score=334.74 Aligned_cols=421 Identities=13% Similarity=0.151 Sum_probs=318.4
Q ss_pred C-CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 8-089999999999998999978999999999980898899999999998227999999999999984079925899999
Q 001486 53 D-DIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLF 131 (1070)
Q Consensus 53 ~-~~~~a~~vyeraL~~~P~s~~lW~~ya~~e~~~~~~e~A~~iferAL~~~P~s~~lW~~y~~~~~~~~~~~~~ar~vf 131 (1070)
| +++.+|.+|++++..+|. ++++.|+.+|+|||..+| ++++|..|++|........+.++.+|
T Consensus 8 ~~~i~~aR~vyer~l~~~P~---------------~~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~~f 71 (493)
T 2uy1_A 8 GVELSSPSAIMEHARRLYMS---------------KDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYEVY 71 (493)
T ss_dssp ----CCHHHHHHHHHHHHHT---------------TCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CTHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCC---------------CCHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf 76468899999999987799---------------999999999999856699-97999999999998475699999999
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHH----HCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
Q ss_conf 9999970998882689999999999----814689999999998706896889999999999977788764200045789
Q 001486 132 KRALSFVGKDYLCHTMWDKYIEFEI----SQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEF 207 (1070)
Q Consensus 132 erAL~~~p~~~~s~~iW~~yi~fe~----~~~~~~~a~~iy~r~L~~p~~~~~~~~~~~~~~~~~~~eal~~~~~~~~~~ 207 (1070)
++|+..+|.++.++.||..|++|+. ..+..+.++++|.|+|.+|..+...+|..|..|...++....
T Consensus 72 e~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~--------- 142 (493)
T 2uy1_A 72 EFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITG--------- 142 (493)
T ss_dssp HHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHH---------
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCH---------
T ss_conf 99998768886618999999999973606567999999999999827354699999999999987461017---------
Q ss_pred HHHHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHH
Q ss_conf 99975217766665630235788632186335787787889999999999999999999999998621357778989957
Q 001486 208 QSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDI 287 (1070)
Q Consensus 208 ~~~~~~~~~l~~~~~~~e~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~y~~a~~~~~~~~~fE~~i~~~~~~~~~~~p~ 287 (1070)
..+ +.. ....|..++..+...... +++ .
T Consensus 143 --~~~-----------------~~~--------------------~~~~y~~ar~~y~~~~~~---~~~----------~ 170 (493)
T 2uy1_A 143 --KKI-----------------VGD--------------------TLPIFQSSFQRYQQIQPL---IRG----------W 170 (493)
T ss_dssp --HHH-----------------HHH--------------------HHHHHHHHHHHHHHHHHH---HHT----------C
T ss_pred --HHH-----------------HHH--------------------HHHHHHHHHHHHHHHHHH---HHH----------C
T ss_conf --889-----------------999--------------------817889999999999988---743----------4
Q ss_pred HHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCHHH
Q ss_conf 79989999999997099-------88999999998425999999999999999950895699999999999883000089
Q 001486 288 QLKNWHDYLSFAEKQGD-------FDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVI 360 (1070)
Q Consensus 288 ~~~~W~~y~~~~~~~g~-------~~~a~~~yerAl~~~p~~~~lW~~ya~~le~~g~~e~A~~ilerAi~~~~~~~p~i 360 (1070)
...+|..|++|++.++. .+++..+|++||..+|.++.+|+.|+.|++..|+.+.|+.+|+||+.. |....+
T Consensus 171 s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l 248 (493)
T 2uy1_A 171 SVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFL 248 (493)
T ss_dssp SHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHH
T ss_pred CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCCHHH
T ss_conf 299999999998629865762125999999999998728998999999999998759989999999998718--996999
Q ss_pred HHHHHHHHHHHCCHHHHHHHHHHHH-HC-------CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 9999999999199999999999876-40-------183459999999999998199999999999999998731047883
Q 001486 361 HLFNARYKEQIGDTSAARAAFPESY-ID-------SDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTL 432 (1070)
Q Consensus 361 ~~~~a~~e~~~g~~eeA~~~~~~al-~~-------~~p~~~~~w~~~a~le~~~g~~e~A~~iyekal~~~~~~~~~~~~ 432 (1070)
|+.++.+++...-++. ++...+ .+ .......+|+.|+.++++.++++.|+.+|++| .. ....
T Consensus 249 ~~~y~~~~e~~~~~~~---l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~------~~~~ 318 (493)
T 2uy1_A 249 SLYYGLVMDEEAVYGD---LKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN------EGVG 318 (493)
T ss_dssp HHHHHHHTTCTHHHHH---HHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT------SCCC
T ss_pred HHHHHHHCCHHHHHHH---HHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH-HC------CCCC
T ss_conf 9998765105689999---999998611101223204561899999999998717889999999986-27------7888
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHH
Q ss_conf 99999999999751099899999999999619990999999999999819986044799999997504986333699331
Q 001486 433 PLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLLLEELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLED 512 (1070)
Q Consensus 433 ~~l~l~~A~~l~~~~g~~e~Ar~iyekaL~~~P~~~~lw~~y~~~e~~~g~~~~~~~ar~llekAl~~~~~~~~~~~~~~ 512 (1070)
..+|+.+|.+++...++.+.||.+|++|++.+|+.+.+|..|++|+...|+.++ +|.+|+++..
T Consensus 319 ~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~---aR~l~er~~k------------- 382 (493)
T 2uy1_A 319 PHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEEN---ARALFKRLEK------------- 382 (493)
T ss_dssp HHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH---HHHHHHHSCC-------------
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHH---HHHHHHHHHH-------------
T ss_conf 599999999999878996899999999998789978999999999987598777---9999999998-------------
Q ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCC----CCCCCCCCCCCHHHHHHH-HHCCCHHHHHCCC
Q ss_conf 99999999999998099999999999999819997----544345753100334565-3112225654089
Q 001486 513 VEDISSLYLQFLDLCGTIHDIRNAWNQHIKLFPHT----VRTAYECPGRETKSLRAF-IRGKRESNVASLP 578 (1070)
Q Consensus 513 ~~~l~~~y~~~e~~~G~~~~a~~~~~ra~~~~p~~----~~~~~~~~~~k~~~~~~~-~~~~~~~~i~~lp 578 (1070)
...+|..|++||..+|+.+.++++++++...+... .......+....+..+.+ .--+|..|+...|
T Consensus 383 ~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~fe~~~g~l~~~~~~~~~~~~~~ 453 (493)
T 2uy1_A 383 TSRMWDSMIEYEFMVGSMELFRELVDQKMDAIKADAILPPLPPREHNVQMEGILGRYHCFLDSFNFLDLKI 453 (493)
T ss_dssp BHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCBCCCCCC--CCCCCHHHHHHHHHHHHHCBTTBCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999999999997799999999999999984555457865422008999987504999988864200315
No 4
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=1.00 E-value=1 Score=328.28 Aligned_cols=421 Identities=12% Similarity=0.126 Sum_probs=296.8
Q ss_pred CHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCC---HHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHCCH-------
Q ss_conf 367799999948999999999999999219980---8999999999999899--9978999999999980898-------
Q 001486 22 GKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDD---IEMIGLVYDSFLAEFP--LCYGYWRKYADHKARLCSI------- 89 (1070)
Q Consensus 22 ~~~~~e~ai~~nP~s~~~W~~li~~~~~~~~~~---~~~a~~vyeraL~~~P--~s~~lW~~ya~~e~~~~~~------- 89 (1070)
.-..|++++..+|.+...|..|+++.... ++ ++.++.+|+|+|...| .++++|..|+.+....++.
T Consensus 85 aR~vyEraL~~fP~~~~lW~~Yi~~E~~~--~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~ 162 (679)
T 4e6h_A 85 VYETFDKLHDRFPLMANIWCMRLSLEFDK--MEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEA 162 (679)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHTC----CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCHH
T ss_conf 99999999998899879999999999863--7850599999999999875477898999999999999855434565013
Q ss_pred -HHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf -89999999999822----799999999999998407--------99258999999999970998882689999999999
Q 001486 90 -DKVVEVFERAVQSA----TYSVDVWFHYCSLSMSTF--------EDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEI 156 (1070)
Q Consensus 90 -e~A~~iferAL~~~----P~s~~lW~~y~~~~~~~~--------~~~~~ar~vferAL~~~p~~~~s~~iW~~yi~fe~ 156 (1070)
+.++.+|++||..+ +.+..||..|+.|+.... +.++.+|++|+|||. +|... ..++|..|..|+.
T Consensus 163 r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~-iP~~~-~~~~w~~Y~~fe~ 240 (679)
T 4e6h_A 163 RNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC-QPMDC-LESMWQRYTQWEQ 240 (679)
T ss_dssp HHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT-SCCSS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH-CCCHH-HHHHHHHHHHHHH
T ss_conf 899999999999981966556539999999999863545767787689999999999982-86377-9999999999997
Q ss_pred HCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCC---------C--C--C
Q ss_conf 8146899999999987068968899999999999777887642000457899997521776666---------5--6--3
Q 001486 157 SQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAY---------Y--K--D 223 (1070)
Q Consensus 157 ~~~~~~~a~~iy~r~L~~p~~~~~~~~~~~~~~~~~~~eal~~~~~~~~~~~~~~~~~~~l~~~---------~--~--~ 223 (1070)
..+.. .+++++..... .+......|..+... . ..+.. .++.. + + +
T Consensus 241 ~~~~~-~a~~~~~e~~~----~y~~Ar~~~~e~~~~----~------------~~l~r-~~p~~~~~~~~~~~p~~~~~~ 298 (679)
T 4e6h_A 241 DVNQL-TARRHIGELSA----QYMNARSLYQDWLNI----T------------KGLKR-NLPITLNQATESNLPKPNEYD 298 (679)
T ss_dssp HHCTT-THHHHHHHHHH----HHHHHHHHHHHHHHH----T------------TTCCC-CCCSSSTTCCTTTSCCTTCCC
T ss_pred HCCCC-HHHHHHHHHHH----HHHHHHHHHHHHHHH----H------------HHHHH-CCCCCCCCCHHCCCCCCCHHH
T ss_conf 35831-18899987337----778899999999999----9------------86751-166543200002589986648
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 0235788632186335787787889999999999----999999999999998621357778989957799899999999
Q 001486 224 DETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIY----KEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFA 299 (1070)
Q Consensus 224 ~e~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~y----~~a~~~~~~~~~fE~~i~~~~~~~~~~~p~~~~~W~~y~~~~ 299 (1070)
......+..++ ..+... .......+.+..||+++. ..|...++|+.|+.|+
T Consensus 299 ~~ql~lW~~yi-----------------~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~--------~~p~~~~lW~~ya~~~ 353 (679)
T 4e6h_A 299 VQQLLIWLEWI-----------------RWESDNKLELSDDLHKARMTYVYMQAAQ--------HVCFAPEIWFNMANYQ 353 (679)
T ss_dssp HHHHHHHHHHH-----------------HHHHTCTTCCCHHHHHHHHHHHHHHHHH--------HTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-----------------HHHHHCCCCCCCHHHHHHHHHHHHHHHH--------HCCCCHHHHHHHHHHH
T ss_conf 99999999999-----------------9998487666410168999999999998--------7699779999999999
Q ss_pred HHCCCHHHHH-HHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH----------H-----------HC
Q ss_conf 9709988999-999998425999999999999999950895699999999999883----------0-----------00
Q 001486 300 EKQGDFDWVV-KLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFL----------K-----------RL 357 (1070)
Q Consensus 300 ~~~g~~~~a~-~~yerAl~~~p~~~~lW~~ya~~le~~g~~e~A~~ilerAi~~~~----------~-----------~~ 357 (1070)
...|+.+.++ .+|++|+..||.+..+|+.|+.+++..|+++.|+.+|++++.... | ..
T Consensus 354 ~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~ 433 (679)
T 4e6h_A 354 GEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKL 433 (679)
T ss_dssp HHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCH
T ss_conf 86286789999999999986898779999999999984889999999999998878776666411674124555411336
Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 089999999999919999999999987640183459999999999998199-9999999999999987310478839999
Q 001486 358 PVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGN-FVAACDTYKEALETAAEQRKFHTLPLLY 436 (1070)
Q Consensus 358 p~i~~~~a~~e~~~g~~eeA~~~~~~al~~~~p~~~~~w~~~a~le~~~g~-~e~A~~iyekal~~~~~~~~~~~~~~l~ 436 (1070)
+.+|+.++.|+.+.+++++||.+|.+|++...+....+|+.++.+|.+.++ .+.|+.+|+++++. .+..+.+|
T Consensus 434 ~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~------~p~~~~~w 507 (679)
T 4e6h_A 434 TYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY------FATDGEYI 507 (679)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH------HTTCHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH------CCCCHHHH
T ss_conf 999999999998708889999999999973689886999999999999689889999999999987------89953999
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 99999997510998999999999996199---90999999999999819986044799999997504986
Q 001486 437 VQFSRLTYTTTGSADNARDILIDGIKHVP---NCKLLLEELIKFTMVHGGRSHISIVDAVISNALYSRPD 503 (1070)
Q Consensus 437 l~~A~~l~~~~g~~e~Ar~iyekaL~~~P---~~~~lw~~y~~~e~~~g~~~~~~~ar~llekAl~~~~~ 503 (1070)
+.|+.++. ..|+.+.||.+|++|++.+| ....+|..|++||..+|+.+. ++.++++++..+|+
T Consensus 508 ~~y~~fe~-~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~---~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 508 NKYLDFLI-YVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNS---VRTLEKRFFEKFPE 573 (679)
T ss_dssp HHHHHHHH-HHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHH---HHHHHHHHHHHSTT
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHH---HHHHHHHHHHHCCC
T ss_conf 99999998-08977899999999987168878999999999999998699999---99999999986899
No 5
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=1.00 E-value=1 Score=296.37 Aligned_cols=413 Identities=12% Similarity=0.194 Sum_probs=304.3
Q ss_pred CCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-HCCHHHHH----HH
Q ss_conf 53677999999489999999999999992199808999999999999899997899999999998-08988999----99
Q 001486 21 FGKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKAR-LCSIDKVV----EV 95 (1070)
Q Consensus 21 ~~~~~~e~ai~~nP~s~~~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P~s~~lW~~ya~~e~~-~~~~e~A~----~i 95 (1070)
.....|++++..+|.+...|..|+.+.... +++++++.+|+|++...| ++++|..|+.+... .++++.|+ .+
T Consensus 30 ~a~~~~e~al~~~P~~~~~w~~~~~~~~~~--~~~~~a~~~~~ral~~~p-~~~lw~~~~~~~~~~~~~~~~a~~~~~~~ 106 (530)
T 2ooe_A 30 KARKTYERLVAQFPSSGRFWKLYIEAEIKA--KNYDKVEKLFQRCLMKVL-HIDLWKCYLSYVRETKGKLPSYKEKMAQA 106 (530)
T ss_dssp HHHHHHHHHHTTCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHTTTCC-CHHHHHHHHHHHHHHTTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 999999999987899799999999999866--988999999999872289-84899999999999746504689999999
Q ss_pred HHHHHHHC---CCCHHHHHHHHHHHHH---------HCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHH
Q ss_conf 99999822---7999999999999984---------07992589999999999709988826899999999998146899
Q 001486 96 FERAVQSA---TYSVDVWFHYCSLSMS---------TFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSS 163 (1070)
Q Consensus 96 ferAL~~~---P~s~~lW~~y~~~~~~---------~~~~~~~ar~vferAL~~~p~~~~s~~iW~~yi~fe~~~~~~~~ 163 (1070)
|++|+..+ |.+..+|..|+.|+.. . ++++.++.+|++++. .|... ...+|..|..|+...+. ..
T Consensus 107 ~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~-~~~~~a~~~y~~al~-~P~~~-~~~~~~~~~~~e~~~~~-~~ 182 (530)
T 2ooe_A 107 YDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAEN-QRITAVRRVYQRGCV-NPMIN-IEQLWRDYNKYEEGINI-HL 182 (530)
T ss_dssp HHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHH-HHHHHHHHHHHHHTT-SCCTT-HHHHHHHHHHHHHHHCH-HH
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCHHHH-HHHHHHHHHHHHHHH-CHHHH-HHHHHHHHHHHHHHHCH-HH
T ss_conf 9999997788866079999999999607776537877-379999999999996-66635-99999999999972166-67
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCC-CCCC----HHHHHHHHHHCCCCH
Q ss_conf 99999998706896889999999999977788764200045789999752177666-6563----023578863218633
Q 001486 164 LAQIFVQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPA-YYKD----DETSSVIKDLLDPSV 238 (1070)
Q Consensus 164 a~~iy~r~L~~p~~~~~~~~~~~~~~~~~~~eal~~~~~~~~~~~~~~~~~~~l~~-~~~~----~e~~~~l~~~~~~~~ 238 (1070)
+.+++... . ..|......+.+. ..+...+ +..+.. .... ......+..++
T Consensus 183 ~~~~l~~~--------~---~~~~~A~~~~~~~---------~~~~~~l-~~~~~~~~p~~~~~~~~~~~~w~~~~---- 237 (530)
T 2ooe_A 183 AKKMIEDR--------S---RDYMNARRVAKEY---------ETVMKGL-DRNAPSVPPQNTPQEAQQVDMWKKYI---- 237 (530)
T ss_dssp HHHHHHTT--------H---HHHHHHHHHHHHH---------HHHHHHC-CSSSCCCCCC--CCHHHHHHHHHHHH----
T ss_pred HHHHHHHH--------H---HHHHHHHHHHHHH---------HHHHHHH-CCCCCCCCCCCCHHHHHHHHHHHHHH----
T ss_conf 99999985--------2---8888799999999---------9999974-20345589999865799999999999----
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH-------C
Q ss_conf 57877878899999999999999---------9999999999862135777898995779989999999997-------0
Q 001486 239 DLVRSKAIQKYRFIGEQIYKEAS---------QLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEK-------Q 302 (1070)
Q Consensus 239 ~~~~a~~~~~~~~~~~~~y~~a~---------~~~~~~~~fE~~i~~~~~~~~~~~p~~~~~W~~y~~~~~~-------~ 302 (1070)
.|.... ...+.+..|++++. .+|....+|..|+.++.. .
T Consensus 238 -----------------~~e~~~~~~~~~~~~~~~~a~~~y~~al~--------~~p~~~~~w~~~~~~~~~~~~~~~~~ 292 (530)
T 2ooe_A 238 -----------------QWEKSNPLRTEDQTLITKRVMFAYEQCLL--------VLGHHPDIWYEAAQYLEQSSKLLAEK 292 (530)
T ss_dssp -----------------HHHHHCSSCCSCSHHHHHHHHHHHHHHHH--------HHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred -----------------HHHHCCCCCCCCCHHHHHHHHHHHHHHHH--------HCCCCHHHHHHHHHHHHHHCHHHHHC
T ss_conf -----------------99870975577512688999999999998--------57897799999999999835465532
Q ss_pred CCHH-------HHHHHHHHHHC-CCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHCC
Q ss_conf 9988-------99999999842-59999999999999999508956999999999998830000-899999999999199
Q 001486 303 GDFD-------WVVKLYERCLI-PCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLP-VIHLFNARYKEQIGD 373 (1070)
Q Consensus 303 g~~~-------~a~~~yerAl~-~~p~~~~lW~~ya~~le~~g~~e~A~~ilerAi~~~~~~~p-~i~~~~a~~e~~~g~ 373 (1070)
|+++ +++.+|++|+. .+|.+..+|+.|+.+++..|++++|+.+|++++.. .|..+ .+|+.++.++.+.|+
T Consensus 293 g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~~~~~~~~~~~~ 371 (530)
T 2ooe_A 293 GDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI-EDIDPTLVYIQYMKFARRAEG 371 (530)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS-SSSCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC-CCCCCHHHHHHHHHHHHHHCC
T ss_conf 6512212114999999999999868665799999999998638899999999998576-456830999999999998068
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHH
Q ss_conf 999999999876401834599999999999-9819999999999999999873104788399999999999751099899
Q 001486 374 TSAARAAFPESYIDSDSRFIEKVTFKANME-RRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADN 452 (1070)
Q Consensus 374 ~eeA~~~~~~al~~~~p~~~~~w~~~a~le-~~~g~~e~A~~iyekal~~~~~~~~~~~~~~l~l~~A~~l~~~~g~~e~ 452 (1070)
+++|+.+|.+++ ...|....+|+..+.++ ...|++++|+.+|+++++. .|..+.+|+.++.++. ..|++++
T Consensus 372 ~~~A~~~~~~Al-~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~------~p~~~~~~~~~~~~~~-~~g~~~~ 443 (530)
T 2ooe_A 372 IKSGRMIFKKAR-EDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK------YGDIPEYVLAYIDYLS-HLNEDNN 443 (530)
T ss_dssp HHHHHHHHHHHH-TCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH------HTTCHHHHHHHHHHHT-TTTCHHH
T ss_pred HHHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH------CCCCHHHHHHHHHHHH-HCCCHHH
T ss_conf 899999999997-3557750899999999998807835999999999987------8997899999999998-6798866
Q ss_pred HHHHHHHHHHHCCCC----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 999999999619990----99999999999981998604479999999750498
Q 001486 453 ARDILIDGIKHVPNC----KLLLEELIKFTMVHGGRSHISIVDAVISNALYSRP 502 (1070)
Q Consensus 453 Ar~iyekaL~~~P~~----~~lw~~y~~~e~~~g~~~~~~~ar~llekAl~~~~ 502 (1070)
||.+|++++..+|.+ ..+|..|+.|+..+|+.+. +..++.+++..+|
T Consensus 444 Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~---~~~~~~r~~~~~p 494 (530)
T 2ooe_A 444 TRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLAS---ILKVEKRRFTAFR 494 (530)
T ss_dssp HHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHH---HHHHHHHHHHHTH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHH---HHHHHHHHHHHCC
T ss_conf 99999999841579878899999999999998299999---9999999998773
No 6
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=1.00 E-value=1 Score=287.82 Aligned_cols=422 Identities=14% Similarity=0.122 Sum_probs=296.0
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHH-
Q ss_conf 7999999489999999999999992199808999999999999899997899999999998089-88999999999982-
Q 001486 25 GLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCS-IDKVVEVFERAVQS- 102 (1070)
Q Consensus 25 ~~e~ai~~nP~s~~~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P~s~~lW~~ya~~e~~~~~-~e~A~~iferAL~~- 102 (1070)
.|+.++...|. +.+++++.+|+|+|...| ++++|..|+.++.+.++ .+.++.+|++|+..
T Consensus 17 vyer~l~~~P~-----------------~~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~v 78 (493)
T 2uy1_A 17 IMEHARRLYMS-----------------KDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQF 78 (493)
T ss_dssp HHHHHHHHHHT-----------------TCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CTHHHHHHHHHHS
T ss_pred HHHHHHHHCCC-----------------CCHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC
T ss_conf 99999987799-----------------999999999999856699-979999999999984756999999999999876
Q ss_pred --CCCCHHHHHHHHHHHHH----HCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCC
Q ss_conf --27999999999999984----079925899999999997099888268999999999981468999999999870689
Q 001486 103 --ATYSVDVWFHYCSLSMS----TFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPS 176 (1070)
Q Consensus 103 --~P~s~~lW~~y~~~~~~----~~~~~~~ar~vferAL~~~p~~~~s~~iW~~yi~fe~~~~~~~~a~~iy~r~L~~p~ 176 (1070)
++.+.+||..|++|+.. + ++++.+|++|+|||. +|... ...+|..|..|+...+ ...+.+++.+...
T Consensus 79 g~d~~s~~iW~~Yi~f~~~~~~~~-~~~~~vR~iy~rAL~-~P~~~-~~~lw~~Y~~fE~~~~-~~~~~~~~~~~~~--- 151 (493)
T 2uy1_A 79 ENYWDSYGLYKEYIEEEGKIEDEQ-TRIEKIRNGYMRALQ-TPMGS-LSELWKDFENFELELN-KITGKKIVGDTLP--- 151 (493)
T ss_dssp TTCTTCHHHHHHHHHHTSSCSSHH-HHHHHHHHHHHHHHT-SCCTT-HHHHHHHHHHHHHHHC-HHHHHHHHHHHHH---
T ss_pred CCCCCCHHHHHHHHHHHHHCHHHH-HHHHHHHHHHHHHHH-CHHHH-HHHHHHHHHHHHHHHC-CCCHHHHHHHHHH---
T ss_conf 888661899999999997360656-799999999999982-73546-9999999999998746-1017889999817---
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 68899999999999777887642000457899997521776666563023578863218633578778788999999999
Q 001486 177 KKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQI 256 (1070)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~eal~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 256 (1070)
.|......+.++... . .. + ..+.|....+|....+...
T Consensus 152 --------~y~~ar~~y~~~~~~------------~-~~-----~-s~~~W~~y~~~E~~~~~~~--------------- 189 (493)
T 2uy1_A 152 --------IFQSSFQRYQQIQPL------------I-RG-----W-SVKNAARLIDLEMENGMKL--------------- 189 (493)
T ss_dssp --------HHHHHHHHHHHHHHH------------H-HT-----C-SHHHHHHHHHHHHTCTTCC---------------
T ss_pred --------HHHHHHHHHHHHHHH------------H-HH-----C-CHHHHHHHHHHHHCCCCCC---------------
T ss_conf --------889999999999988------------7-43-----4-2999999999986298657---------------
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
Q ss_conf 99999999999999986213577789899577998999999999709988999999998425999999999999999950
Q 001486 257 YKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESK 336 (1070)
Q Consensus 257 y~~a~~~~~~~~~fE~~i~~~~~~~~~~~p~~~~~W~~y~~~~~~~g~~~~a~~~yerAl~~~p~~~~lW~~ya~~le~~ 336 (1070)
.......+....|++++.. .|+...+|+.|+.++...|+.+.|+.+|+||+.. |....+|+.|+.+++..
T Consensus 190 -~~~~~~~Rv~~~ye~al~~--------~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~ 259 (493)
T 2uy1_A 190 -GGRPHESRMHFIHNYILDS--------FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEE 259 (493)
T ss_dssp -CHHHHHHHHHHHHHHHHHH--------TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCT
T ss_pred -CCHHHHHHHHHHHHHHHHC--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC-CCCHHHHHHHHHHCCHH
T ss_conf -6212599999999999872--------8998999999999998759989999999998718-99699999987651056
Q ss_pred CCHHHHHHHHHHHHH--------HHHHHCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC-
Q ss_conf 895699999999999--------88300008999999999991999999999998764018345999999999999819-
Q 001486 337 GGREIASYALDRATQ--------IFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLG- 407 (1070)
Q Consensus 337 g~~e~A~~ilerAi~--------~~~~~~p~i~~~~a~~e~~~g~~eeA~~~~~~al~~~~p~~~~~w~~~a~le~~~g- 407 (1070)
. ....++++.+. ...+....+|+.|+.|+.+.+++++||.+|.+| . ..+....+|+.+|.+|...+
T Consensus 260 ~---~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~-~~~~~~~v~i~~A~lE~~~~~ 334 (493)
T 2uy1_A 260 A---VYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-G-NEGVGPHVFIYCAFIEYYATG 334 (493)
T ss_dssp H---HHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-T-TSCCCHHHHHHHHHHHHHHHC
T ss_pred H---HHHHHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH-H-CCCCCHHHHHHHHHHHHHHCC
T ss_conf 8---9999999998611101223204561899999999998717889999999986-2-778885999999999998789
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCH
Q ss_conf 99999999999999987310478839999999999975109989999999999961999099999999999981998604
Q 001486 408 NFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLLLEELIKFTMVHGGRSHI 487 (1070)
Q Consensus 408 ~~e~A~~iyekal~~~~~~~~~~~~~~l~l~~A~~l~~~~g~~e~Ar~iyekaL~~~P~~~~lw~~y~~~e~~~g~~~~~ 487 (1070)
+.+.|+.+|+++++. .+..+.+|+.|+.++. ..|+.+.||.+|+++ ..+..+|..|++||..+|+.+.
T Consensus 335 d~~~ar~ife~al~~------~~~~~~~~~~yid~e~-~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~- 402 (493)
T 2uy1_A 335 SRATPYNIFSSGLLK------HPDSTLLKEEFFLFLL-RIGDEENARALFKRL----EKTSRMWDSMIEYEFMVGSMEL- 402 (493)
T ss_dssp CSHHHHHHHHHHHHH------CTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHH-
T ss_pred CHHHHHHHHHHHHHH------CCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHH-
T ss_conf 968999999999987------8997899999999998-759877799999999----9899999999999997799999-
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCC
Q ss_conf 479999999750498633369933199999999999998099999999999999819997
Q 001486 488 SIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQHIKLFPHT 547 (1070)
Q Consensus 488 ~~ar~llekAl~~~~~~~~~~~~~~~~~l~~~y~~~e~~~G~~~~a~~~~~ra~~~~p~~ 547 (1070)
+|.++++++..... -..+++..+...|+.||+..|+++++..-|.. +.+.|.+
T Consensus 403 --~r~v~~~~~~~~~~----~~~~~~~~~~~~~~~fe~~~g~l~~~~~~~~~-~~~~~~~ 455 (493)
T 2uy1_A 403 --FRELVDQKMDAIKA----DAILPPLPPREHNVQMEGILGRYHCFLDSFNF-LDLKIRD 455 (493)
T ss_dssp --HHHHHHHHHHHHHT----TCCBCCCCCC--CCCCCHHHHHHHHHHHHHCB-TTBCCCC
T ss_pred --HHHHHHHHHHHHCC----CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH-HCCCCCC
T ss_conf --99999999998455----54578654220089999875049999888642-0031588
No 7
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=1.00 E-value=1 Score=240.07 Aligned_cols=356 Identities=13% Similarity=0.121 Sum_probs=206.6
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 80899999999999989999789999999999808988999999999982279999999999999840799258999999
Q 001486 53 DDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFK 132 (1070)
Q Consensus 53 ~~~~~a~~vyeraL~~~P~s~~lW~~ya~~e~~~~~~e~A~~iferAL~~~P~s~~lW~~y~~~~~~~~~~~~~ar~vfe 132 (1070)
+++++|...|+++++..|.+...|..++.+....+++++|...+++++...|.+...|..++..+... +++++|...|+
T Consensus 13 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~-g~~~~A~~~~~ 91 (388)
T 1w3b_A 13 GDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKER-GQLQEAIEHYR 91 (388)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-TCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC-CCHHHHHHHHH
T ss_conf 99999999999999849788999999999999868999999999999761978669999999999877-99999999999
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf 99997099888268999999999981468999999999870689688999999999997778876420004578999975
Q 001486 133 RALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELV 212 (1070)
Q Consensus 133 rAL~~~p~~~~s~~iW~~yi~fe~~~~~~~~a~~iy~r~L~~p~~~~~~~~~~~~~~~~~~~eal~~~~~~~~~~~~~~~ 212 (1070)
+++...|. ....|...+......+.++.+...|.+++...+........ ++.
T Consensus 92 ~al~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-----l~~-------------------- 143 (388)
T 1w3b_A 92 HALRLKPD---FIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSD-----LGN-------------------- 143 (388)
T ss_dssp HHHHHCTT---CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHH-----HHH--------------------
T ss_pred HHHHCCCC---HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHH-----HHH--------------------
T ss_conf 99874965---39999999999998589999999999999759896899999-----999--------------------
Q ss_pred HCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH
Q ss_conf 21776666563023578863218633578778788999999999999999999999999862135777898995779989
Q 001486 213 LEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNW 292 (1070)
Q Consensus 213 ~~~~l~~~~~~~e~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~y~~a~~~~~~~~~fE~~i~~~~~~~~~~~p~~~~~W 292 (1070)
+....+. +++ ++..|+++++ .+|.....|
T Consensus 144 --------------------~~~~~g~-----------------~~~------A~~~~~~al~--------~~p~~~~~~ 172 (388)
T 1w3b_A 144 --------------------LLKALGR-----------------LEE------AKACYLKAIE--------TQPNFAVAW 172 (388)
T ss_dssp --------------------HHHTTSC-----------------HHH------HHHHHHHHHH--------HCTTCHHHH
T ss_pred --------------------HHHHCCC-----------------HHH------HHHHHHHHHH--------HCCCCHHHH
T ss_conf --------------------9998468-----------------999------9999999987--------298978999
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHC
Q ss_conf 99999999709988999999998425999999999999999950895699999999999883000089999999999919
Q 001486 293 HDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIG 372 (1070)
Q Consensus 293 ~~y~~~~~~~g~~~~a~~~yerAl~~~p~~~~lW~~ya~~le~~g~~e~A~~ilerAi~~~~~~~p~i~~~~a~~e~~~g 372 (1070)
..++..+...|++++++..|++++...|.+...|..++..+...|++++|...|++++.. .|+.+.+|...+......|
T Consensus 173 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g 251 (388)
T 1w3b_A 173 SNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL-SPNHAVVHGNLACVYYEQG 251 (388)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCC
T ss_conf 999999998599999999999998559886799999999999857899999999999852-9687899999999999868
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHH
Q ss_conf 99999999998764018345999999999999819999999999999999873104788399999999999751099899
Q 001486 373 DTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADN 452 (1070)
Q Consensus 373 ~~eeA~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~e~A~~iyekal~~~~~~~~~~~~~~l~l~~A~~l~~~~g~~e~ 452 (1070)
++++|...|.+++ ...|....+|..++.++...|++++|+.+|+++++. .|..+.+|..+|.++. ..|++++
T Consensus 252 ~~~~A~~~~~~al-~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~-~~g~~~~ 323 (388)
T 1w3b_A 252 LIDLAIDTYRRAI-ELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL------CPTHADSLNNLANIKR-EQGNIEE 323 (388)
T ss_dssp CHHHHHHHHHHHH-HTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHH-TTTCHHH
T ss_pred CHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH------CCCCHHHHHHHHHHHH-HCCCHHH
T ss_conf 8999999999998-649998899999999999869979999999999864------9444999999999999-8489999
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCC
Q ss_conf 999999999619990999999999999819986044799999997504
Q 001486 453 ARDILIDGIKHVPNCKLLLEELIKFTMVHGGRSHISIVDAVISNALYS 500 (1070)
Q Consensus 453 Ar~iyekaL~~~P~~~~lw~~y~~~e~~~g~~~~~~~ar~llekAl~~ 500 (1070)
|...|+++++..|++...|..++......|+.+. +...|++++..
T Consensus 324 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~---A~~~~~~a~~~ 368 (388)
T 1w3b_A 324 AVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQE---ALMHYKEAIRI 368 (388)
T ss_dssp HHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHH---HHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHH---HHHHHHHHHHH
T ss_conf 9999999986098739999779999998688899---99999999861
No 8
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=1.00 E-value=1 Score=236.47 Aligned_cols=369 Identities=12% Similarity=0.115 Sum_probs=321.0
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Q ss_conf 67799999948999999999999999219980899999999999989999789999999999808988999999999982
Q 001486 23 KQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQS 102 (1070)
Q Consensus 23 ~~~~e~ai~~nP~s~~~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P~s~~lW~~ya~~e~~~~~~e~A~~iferAL~~ 102 (1070)
...+++.+..+|.+...|..+...+... ++++++...++++++..|.+...|..++..+...+++++|...|++++..
T Consensus 19 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~--~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 96 (388)
T 1w3b_A 19 ERHCMQLWRQEPDNTGVLLLLSSIHFQC--RRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRL 96 (388)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 9999999984978899999999999986--89999999999997619786699999999998779999999999999874
Q ss_pred CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 27999999999999984079925899999999997099888268999999999981468999999999870689688999
Q 001486 103 ATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHY 182 (1070)
Q Consensus 103 ~P~s~~lW~~y~~~~~~~~~~~~~ar~vferAL~~~p~~~~s~~iW~~yi~fe~~~~~~~~a~~iy~r~L~~p~~~~~~~ 182 (1070)
.|.+++.|..++..+... +++++|...|++++...|. ...+|.....+....+.++.+..+|.+++...+.....+
T Consensus 97 ~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 172 (388)
T 1w3b_A 97 KPDFIDGYINLAAALVAA-GDMEGAVQAYVSALQYNPD---LYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAW 172 (388)
T ss_dssp CTTCHHHHHHHHHHHHHH-SCSSHHHHHHHHHHHHCTT---CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CCCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 965399999999999985-8999999999999975989---689999999999984689999999999987298978999
Q ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999777887642000457899997521776666563023578863218633578778788999999999999999
Q 001486 183 YDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQ 262 (1070)
Q Consensus 183 ~~~~~~~~~~~~eal~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~y~~a~~ 262 (1070)
+. .-. . |....+
T Consensus 173 ~~-l~~---~----------------------------------------------------------------~~~~g~ 184 (388)
T 1w3b_A 173 SN-LGC---V----------------------------------------------------------------FNAQGE 184 (388)
T ss_dssp HH-HHH---H----------------------------------------------------------------HHTTTC
T ss_pred HH-HHH---H----------------------------------------------------------------HHHCCC
T ss_conf 99-999---9----------------------------------------------------------------998599
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHH
Q ss_conf 99999999986213577789899577998999999999709988999999998425999999999999999950895699
Q 001486 263 LDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIA 342 (1070)
Q Consensus 263 ~~~~~~~fE~~i~~~~~~~~~~~p~~~~~W~~y~~~~~~~g~~~~a~~~yerAl~~~p~~~~lW~~ya~~le~~g~~e~A 342 (1070)
....+..|+++++ .+|.....|..++..+...|++++++..|++++...|.+..+|..++..+...|++++|
T Consensus 185 ~~~A~~~~~~al~--------~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 256 (388)
T 1w3b_A 185 IWLAIHHFEKAVT--------LDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLA 256 (388)
T ss_dssp HHHHHHHHHHHHH--------HCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHH--------CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHH
T ss_conf 9999999999985--------59886799999999999857899999999999852968789999999999986889999
Q ss_pred HHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 99999999988300008999999999991999999999998764018345999999999999819999999999999999
Q 001486 343 SYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALET 422 (1070)
Q Consensus 343 ~~ilerAi~~~~~~~p~i~~~~a~~e~~~g~~eeA~~~~~~al~~~~p~~~~~w~~~a~le~~~g~~e~A~~iyekal~~ 422 (1070)
...|++++.. .|..+.+|...+......|++++|...|.+++ ...|....+|..++.++...|++++|+.+|+++++.
T Consensus 257 ~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 334 (388)
T 1w3b_A 257 IDTYRRAIEL-QPHFPDAYCNLANALKEKGSVAEAEDCYNTAL-RLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV 334 (388)
T ss_dssp HHHHHHHHHT-CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 9999999864-99988999999999998699799999999998-649444999999999999848999999999999860
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
Q ss_conf 873104788399999999999751099899999999999619990999999999999819
Q 001486 423 AAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLLLEELIKFTMVHG 482 (1070)
Q Consensus 423 ~~~~~~~~~~~~l~l~~A~~l~~~~g~~e~Ar~iyekaL~~~P~~~~lw~~y~~~e~~~g 482 (1070)
.|....++..+|.++. ..|++++|...|+++++..|+....|..++......|
T Consensus 335 ------~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 335 ------FPEFAAAHSNLASVLQ-QQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp ------CTTCHHHHHHHHHHHH-TTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred ------CCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
T ss_conf ------9873999977999999-8688899999999998619997899985999998745
No 9
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=233.24 Aligned_cols=471 Identities=8% Similarity=-0.027 Sum_probs=239.7
Q ss_pred HHCC-CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 9489-999999999999992199808999999999999899997899999999998089889999999999822799999
Q 001486 31 AEGS-LDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDV 109 (1070)
Q Consensus 31 ~~nP-~s~~~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P~s~~lW~~ya~~e~~~~~~e~A~~iferAL~~~P~s~~l 109 (1070)
...| .++..|..++..+... +++++|..+|++++...|+. ..|..++..+...+++++|+.+|++++.. +.++.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~--g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~ 152 (597)
T 2xpi_A 77 NTDSLSREDYLRLWRHDALMQ--QQYKCAAFVGEKVLDITGNP-NDAFWLAQVYCCTGDYARAKCLLTKEDLY-NRSSAC 152 (597)
T ss_dssp -----CHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHTTCHHHHHHHHHHTCGG-GTCHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHCCCHHHHHHHHHHHHCC-CCCHHH
T ss_conf 663378999999999999874--58347999999999608993-57999999999747699999999987335-456508
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC----------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHC
Q ss_conf 99999999840799258999999999970998----------------88268999999999981468999999999870
Q 001486 110 WFHYCSLSMSTFEDPNDVRRLFKRALSFVGKD----------------YLCHTMWDKYIEFEISQQRWSSLAQIFVQTLR 173 (1070)
Q Consensus 110 W~~y~~~~~~~~~~~~~ar~vferAL~~~p~~----------------~~s~~iW~~yi~fe~~~~~~~~a~~iy~r~L~ 173 (1070)
|..++..+... +++++|+++|++. .|.. .....+|...+......+.++.++++|++++.
T Consensus 153 ~~~l~~~~~~~-g~~~~A~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 228 (597)
T 2xpi_A 153 RYLAAFCLVKL-YDWQGALNLLGET---NPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALM 228 (597)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHCSS---CTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHCC---CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 99999999988-6699999998424---8863223234334321123512589999988999983998999999999997
Q ss_pred CCCCCHHHHHHHHHHHH---HHHHHH-HH---HCC--HHHHH---HHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHH
Q ss_conf 68968899999999999---777887-64---200--04578---99997521776666563023578863218633578
Q 001486 174 FPSKKLHHYYDSFKKLA---GAWKEE-LE---CES--DSAME---FQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLV 241 (1070)
Q Consensus 174 ~p~~~~~~~~~~~~~~~---~~~~ea-l~---~~~--~~~~~---~~~~~~~~~~l~~~~~~~e~~~~l~~~~~~~~~~~ 241 (1070)
..+..... +..+.... +..... +. ... ..... .++..+...... .-.-.+....+..+.+. +...
T Consensus 229 ~~p~~~~~-~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~A~~~~~~~~~~-~~~~ 305 (597)
T 2xpi_A 229 VDAKCYEA-FDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSH-EDELRRAEDYLSSINGL-EKSS 305 (597)
T ss_dssp HCTTCHHH-HHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTT-HHHHHHHHHHHHTSTTG-GGCH
T ss_pred HCCHHHHH-HHHHHHHHCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCC-CCHH
T ss_conf 29325699-999998503461567899986577423443088999999999999807-31399999999876438-8309
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCC
Q ss_conf 77878899999999999999999999999986213577789899577998999999999709988999999998425999
Q 001486 242 RSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCAD 321 (1070)
Q Consensus 242 ~a~~~~~~~~~~~~~y~~a~~~~~~~~~fE~~i~~~~~~~~~~~p~~~~~W~~y~~~~~~~g~~~~a~~~yerAl~~~p~ 321 (1070)
. .+......|....+...++..|++.++ .+|.+...|..++..+...|+++++..+|++++...|.
T Consensus 306 ~------~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 371 (597)
T 2xpi_A 306 D------LLLCKADTLFVRSRFIDVLAITTKILE--------IDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPE 371 (597)
T ss_dssp H------HHHHHHHHHHHTTCHHHHHHHHHHHHH--------HCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred H------HHHHHHHHHHHHCCHHHHHHHHHHHHH--------CCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCC
T ss_conf 9------999999999984689999999999997--------29553799999999999827777999999999851835
Q ss_pred CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 99999999999995089569999999999988300008999999999991999999999998764018345999999999
Q 001486 322 YPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKAN 401 (1070)
Q Consensus 322 ~~~lW~~ya~~le~~g~~e~A~~ilerAi~~~~~~~p~i~~~~a~~e~~~g~~eeA~~~~~~al~~~~p~~~~~w~~~a~ 401 (1070)
...+|..++..+...|++++|+.+|++++.. .|.....|...+......|++++|..+|.+++ ...|+...+|..++.
T Consensus 372 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~l~~ 449 (597)
T 2xpi_A 372 KAVTWLAVGIYYLCVNKISEARRYFSKSSTM-DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAA-RLFQGTHLPYLFLGM 449 (597)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HTTTTCSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHCCCCHHHHHHHHH
T ss_conf 4799999999999835699999999999872-97778999999999997577799999999999-868134389999999
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH------CCCC-HHHHHHH
Q ss_conf 99981999999999999999987310478839999999999975109989999999999961------9990-9999999
Q 001486 402 MERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKH------VPNC-KLLLEEL 474 (1070)
Q Consensus 402 le~~~g~~e~A~~iyekal~~~~~~~~~~~~~~l~l~~A~~l~~~~g~~e~Ar~iyekaL~~------~P~~-~~lw~~y 474 (1070)
++...|++++|+.+|+++++. .+..+.+|..+|.++. ..|++++|.++|+++++. .|+. ..+|..+
T Consensus 450 ~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l 522 (597)
T 2xpi_A 450 QHMQLGNILLANEYLQSSYAL------FQYDPLLLNELGVVAF-NKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANL 522 (597)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH------CCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHH------CCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 999857999999999999984------8887679999999999-818999999999999985323454535499999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCC
Q ss_conf 9999981998604479999999750498633369933199999999999998099999999999999819997
Q 001486 475 IKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQHIKLFPHT 547 (1070)
Q Consensus 475 ~~~e~~~g~~~~~~~ar~llekAl~~~~~~~~~~~~~~~~~l~~~y~~~e~~~G~~~~a~~~~~ra~~~~p~~ 547 (1070)
+......|+.+. +..+|++++...| + ....|...+......|+.+++..++++++++.|+.
T Consensus 523 ~~~~~~~g~~~~---A~~~~~~~~~~~p--------~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 583 (597)
T 2xpi_A 523 GHAYRKLKMYDA---AIDALNQGLLLST--------N-DANVHTAIALVYLHKKIPGLAITHLHESLAISPNE 583 (597)
T ss_dssp HHHHHHTTCHHH---HHHHHHHHHHHSS--------C-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHCCHHH---HHHHHHHHHHHCC--------C-CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCC
T ss_conf 999998047999---9999999997389--------9-73899999999998178999999999997208887
No 10
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=1.00 E-value=1 Score=229.40 Aligned_cols=250 Identities=18% Similarity=0.261 Sum_probs=220.8
Q ss_pred CHHHHHHHHHHHHHHHHC----CCH----HHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-------HCCH-------HHH
Q ss_conf 957799899999999970----998----899999999842599999999999999995-------0895-------699
Q 001486 285 DDIQLKNWHDYLSFAEKQ----GDF----DWVVKLYERCLIPCADYPEFWMRYVDFMES-------KGGR-------EIA 342 (1070)
Q Consensus 285 ~p~~~~~W~~y~~~~~~~----g~~----~~a~~~yerAl~~~p~~~~lW~~ya~~le~-------~g~~-------e~A 342 (1070)
++....+|.+|++|+++. ++. ++|+.+|++|+..+|.+.++|+.|+.++.. .|++ ++|
T Consensus 4 ~~~~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A 83 (308)
T 2ond_A 4 EAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEA 83 (308)
T ss_dssp HHHHHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCHHHHHCCCHHHCCCCHHHH
T ss_conf 79999999999999874966688558999999999999998768987999999999987353433125400000016999
Q ss_pred HHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHH-HHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 9999999998830000899999999999199999999999876401834599-999999999981999999999999999
Q 001486 343 SYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIE-KVTFKANMERRLGNFVAACDTYKEALE 421 (1070)
Q Consensus 343 ~~ilerAi~~~~~~~p~i~~~~a~~e~~~g~~eeA~~~~~~al~~~~p~~~~-~w~~~a~le~~~g~~e~A~~iyekal~ 421 (1070)
+.+|+||+....|+...+|+.++.++...|++++|+.+|++++ ...|.... +|+.++.++.+.|++++|+.+|++|++
T Consensus 84 ~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al-~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 162 (308)
T 2ond_A 84 ANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLL-AIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE 162 (308)
T ss_dssp HHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-TSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 9999999998595247999998999885589999999999998-153667358999999999984488999999999985
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 98731047883999999999997510998999999999996199909999999999998199860447999999975049
Q 001486 422 TAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLLLEELIKFTMVHGGRSHISIVDAVISNALYSR 501 (1070)
Q Consensus 422 ~~~~~~~~~~~~~l~l~~A~~l~~~~g~~e~Ar~iyekaL~~~P~~~~lw~~y~~~e~~~g~~~~~~~ar~llekAl~~~ 501 (1070)
. .|..+.+|+.++.+++...|++++|+++|++|++.+|++..+|..|+.++...|+.++ ++.+|++|+..+
T Consensus 163 ~------~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~---A~~~~~~al~~~ 233 (308)
T 2ond_A 163 D------ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNN---TRVLFERVLTSG 233 (308)
T ss_dssp S------TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHH---HHHHHHHHHHSS
T ss_pred C------CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHH---HHHHHHHHHHCC
T ss_conf 6------8988799999999999875997999999999987678829999999999998899899---999999997456
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 863336993319999999999999809999999999999981999754
Q 001486 502 PDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQHIKLFPHTVR 549 (1070)
Q Consensus 502 ~~~~~~~~~~~~~~l~~~y~~~e~~~G~~~~a~~~~~ra~~~~p~~~~ 549 (1070)
.++++....+|..|+.|+...|+.+.+..++.|+++.+|++..
T Consensus 234 -----~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~~ 276 (308)
T 2ond_A 234 -----SLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYE 276 (308)
T ss_dssp -----SSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTS
T ss_pred -----CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCC
T ss_conf -----8998999999999999999849989999999999987653025
Done!