Query 001487
Match_columns 1069
No_of_seqs 320 out of 3102
Neff 10.9
Searched_HMMs 46136
Date Fri Mar 29 02:03:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001487.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001487hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2171 Karyopherin (importin) 100.0 6E-124 1E-128 1038.8 104.9 1024 19-1066 1-1028(1075)
2 KOG2023 Nuclear transport rece 100.0 2.9E-70 6.4E-75 566.4 49.8 768 22-1060 13-834 (885)
3 KOG1241 Karyopherin (importin) 100.0 8.8E-59 1.9E-63 490.5 66.2 763 23-880 2-822 (859)
4 COG5215 KAP95 Karyopherin (imp 100.0 4.7E-46 1E-50 379.7 67.5 684 20-775 2-731 (858)
5 KOG1824 TATA-binding protein-i 100.0 9.1E-38 2E-42 337.3 72.3 948 26-1065 9-1155(1233)
6 KOG2171 Karyopherin (importin) 100.0 1.3E-36 2.9E-41 340.7 80.6 832 107-1064 8-980 (1075)
7 KOG1991 Nuclear transport rece 100.0 1.4E-30 3E-35 286.3 69.2 689 19-736 1-794 (1010)
8 KOG2023 Nuclear transport rece 100.0 8E-31 1.7E-35 273.8 54.7 742 30-932 56-879 (885)
9 KOG1824 TATA-binding protein-i 100.0 1.5E-28 3.2E-33 266.5 61.3 885 61-1060 10-1053(1233)
10 KOG1241 Karyopherin (importin) 100.0 1.9E-25 4.1E-30 238.4 60.9 721 240-1064 10-789 (859)
11 KOG1992 Nuclear export recepto 100.0 1.4E-24 3E-29 233.4 66.1 689 20-783 3-779 (960)
12 KOG1993 Nuclear transport rece 100.0 1.7E-23 3.7E-28 223.9 61.2 517 24-555 2-624 (978)
13 KOG2274 Predicted importin 9 [ 100.0 2.6E-23 5.7E-28 226.3 59.5 597 20-643 2-668 (1005)
14 KOG0213 Splicing factor 3b, su 99.9 1.8E-20 4E-25 198.6 52.2 675 185-1019 365-1092(1172)
15 COG5215 KAP95 Karyopherin (imp 99.9 4.1E-18 8.9E-23 176.1 61.5 719 116-1004 17-814 (858)
16 COG5656 SXM1 Importin, protein 99.9 8.2E-18 1.8E-22 179.4 63.2 512 21-551 2-587 (970)
17 KOG0213 Splicing factor 3b, su 99.9 9.6E-17 2.1E-21 170.8 60.4 680 23-795 364-1105(1172)
18 KOG2021 Nuclear mRNA export fa 99.9 4.1E-17 8.9E-22 174.4 56.1 598 22-643 3-747 (980)
19 PLN03200 cellulose synthase-in 99.9 2.1E-16 4.5E-21 194.4 70.3 779 22-953 13-861 (2102)
20 COG5181 HSH155 U2 snRNP splice 99.9 1.5E-18 3.3E-23 180.6 39.7 669 194-1019 178-897 (975)
21 KOG0915 Uncharacterized conser 99.8 5.4E-17 1.2E-21 186.8 46.6 591 230-935 817-1452(1702)
22 KOG2022 Nuclear transport rece 99.8 3.2E-13 6.8E-18 148.3 66.6 539 20-579 5-672 (982)
23 COG5101 CRM1 Importin beta-rel 99.8 4.3E-13 9.3E-18 141.0 64.7 497 19-536 11-652 (1053)
24 PLN03200 cellulose synthase-in 99.8 9.3E-15 2E-19 180.1 61.4 766 142-1048 57-868 (2102)
25 COG5181 HSH155 U2 snRNP splice 99.8 2.6E-14 5.6E-19 149.6 47.0 643 20-743 166-871 (975)
26 COG5657 CSE1 CAS/CSE protein i 99.8 2.7E-13 5.8E-18 149.9 56.6 547 19-577 1-609 (947)
27 KOG1242 Protein containing ada 99.8 5.3E-15 1.1E-19 158.0 41.4 527 68-736 28-558 (569)
28 KOG0915 Uncharacterized conser 99.7 3.3E-12 7.2E-17 148.1 58.3 650 181-955 815-1513(1702)
29 KOG1991 Nuclear transport rece 99.7 1.3E-09 2.8E-14 122.6 69.7 487 60-594 5-589 (1010)
30 KOG1242 Protein containing ada 99.7 1.8E-13 3.8E-18 146.5 37.1 438 58-555 98-546 (569)
31 KOG1248 Uncharacterized conser 99.7 1.9E-09 4.1E-14 123.7 66.0 746 58-932 95-920 (1176)
32 KOG0212 Uncharacterized conser 99.6 1.7E-12 3.6E-17 135.5 32.7 394 108-536 5-410 (675)
33 PTZ00429 beta-adaptin; Provisi 99.6 2.8E-10 6.1E-15 131.5 50.9 476 17-576 62-545 (746)
34 KOG0212 Uncharacterized conser 99.6 1E-11 2.2E-16 129.8 34.1 413 188-644 4-425 (675)
35 KOG1248 Uncharacterized conser 99.6 4.4E-08 9.4E-13 112.9 64.4 736 206-1064 72-878 (1176)
36 PF01602 Adaptin_N: Adaptin N 99.6 5.2E-11 1.1E-15 139.7 43.3 509 23-618 8-520 (526)
37 PF01602 Adaptin_N: Adaptin N 99.6 3E-11 6.6E-16 141.7 40.7 452 16-531 35-523 (526)
38 KOG0166 Karyopherin (importin) 99.5 8.5E-12 1.8E-16 133.2 27.0 362 145-536 68-440 (514)
39 KOG2081 Nuclear transport regu 99.5 3E-10 6.4E-15 120.3 37.8 463 40-535 2-539 (559)
40 PTZ00429 beta-adaptin; Provisi 99.5 1.4E-08 3.1E-13 117.6 53.6 424 118-624 47-473 (746)
41 KOG0166 Karyopherin (importin) 99.5 2E-11 4.4E-16 130.4 25.0 360 186-579 68-438 (514)
42 KOG0211 Protein phosphatase 2A 99.4 2.3E-09 5E-14 122.3 37.7 563 117-795 95-662 (759)
43 KOG0211 Protein phosphatase 2A 99.3 1.1E-08 2.3E-13 116.9 38.1 495 68-623 170-665 (759)
44 KOG1943 Beta-tubulin folding c 99.3 2E-06 4.3E-11 98.4 55.0 477 98-625 336-840 (1133)
45 PF10508 Proteasom_PSMB: Prote 99.2 7.6E-08 1.6E-12 109.2 39.0 394 108-533 43-463 (503)
46 COG5064 SRP1 Karyopherin (impo 99.2 4E-10 8.7E-15 110.3 16.4 361 145-577 73-443 (526)
47 PF08506 Cse1: Cse1; InterPro 99.2 3.4E-09 7.3E-14 113.2 24.3 255 222-485 73-370 (370)
48 KOG1943 Beta-tubulin folding c 99.2 4.4E-05 9.5E-10 87.9 57.8 472 456-1038 337-836 (1133)
49 KOG2274 Predicted importin 9 [ 99.1 7.2E-05 1.6E-09 84.3 56.4 321 540-955 445-783 (1005)
50 KOG1060 Vesicle coat complex A 99.1 6.4E-07 1.4E-11 98.4 33.9 451 24-552 73-549 (968)
51 PRK13800 putative oxidoreducta 99.1 3.3E-08 7.1E-13 121.0 27.3 275 144-529 622-896 (897)
52 KOG1992 Nuclear export recepto 99.1 7.8E-05 1.7E-09 83.1 59.3 714 102-956 5-798 (960)
53 PF10508 Proteasom_PSMB: Prote 99.1 1.6E-06 3.5E-11 98.5 38.7 424 23-490 4-462 (503)
54 PF12460 MMS19_C: RNAPII trans 99.0 5.2E-07 1.1E-11 100.4 33.5 382 146-552 2-414 (415)
55 PRK13800 putative oxidoreducta 99.0 5.8E-08 1.3E-12 118.9 28.1 273 106-487 624-896 (897)
56 PRK09687 putative lyase; Provi 99.0 1.2E-07 2.6E-12 98.0 25.2 252 187-528 26-278 (280)
57 KOG1062 Vesicle coat complex A 99.0 3.2E-05 6.9E-10 86.0 44.6 441 99-627 103-549 (866)
58 PF12755 Vac14_Fab1_bd: Vacuol 99.0 5.1E-09 1.1E-13 87.2 11.1 94 393-489 2-95 (97)
59 PRK09687 putative lyase; Provi 99.0 1.6E-07 3.6E-12 97.0 24.2 250 108-486 28-278 (280)
60 KOG1060 Vesicle coat complex A 99.0 1.5E-05 3.2E-10 88.0 38.6 392 108-547 40-473 (968)
61 COG5064 SRP1 Karyopherin (impo 98.9 4.1E-07 8.9E-12 89.7 23.8 351 69-492 83-445 (526)
62 KOG1240 Protein kinase contain 98.9 1.9E-07 4.2E-12 107.1 24.6 302 144-494 423-729 (1431)
63 KOG0891 DNA-dependent protein 98.9 4.2E-05 9.2E-10 98.0 47.3 545 377-1002 134-766 (2341)
64 KOG1967 DNA repair/transcripti 98.9 0.00034 7.3E-09 79.4 53.4 237 683-953 786-1025(1030)
65 PF12348 CLASP_N: CLASP N term 98.9 1.3E-07 2.8E-12 96.7 18.9 190 379-580 9-209 (228)
66 KOG1020 Sister chromatid cohes 98.8 0.0011 2.3E-08 79.4 52.9 131 435-580 794-924 (1692)
67 KOG1993 Nuclear transport rece 98.8 0.00068 1.5E-08 75.5 58.1 455 476-1065 412-886 (978)
68 KOG1020 Sister chromatid cohes 98.8 0.00082 1.8E-08 80.4 47.2 142 104-258 817-958 (1692)
69 KOG1062 Vesicle coat complex A 98.7 0.00037 8.1E-09 77.9 39.5 196 97-303 136-379 (866)
70 KOG1061 Vesicle coat complex A 98.7 6.4E-05 1.4E-09 83.9 33.8 471 27-576 54-527 (734)
71 KOG0392 SNF2 family DNA-depend 98.7 0.0014 3E-08 76.9 45.0 143 68-216 88-239 (1549)
72 COG5240 SEC21 Vesicle coat com 98.7 0.00018 4E-09 76.6 35.1 293 181-531 261-554 (898)
73 PF12348 CLASP_N: CLASP N term 98.7 5.5E-07 1.2E-11 92.1 16.5 188 351-545 20-219 (228)
74 KOG2020 Nuclear transport rece 98.7 0.0031 6.8E-08 75.6 57.9 225 23-263 11-261 (1041)
75 PF12460 MMS19_C: RNAPII trans 98.6 0.00017 3.6E-09 80.6 36.1 393 421-889 2-414 (415)
76 KOG4224 Armadillo repeat prote 98.6 7.1E-06 1.5E-10 82.0 21.9 391 108-535 90-496 (550)
77 KOG4224 Armadillo repeat prote 98.6 9.5E-07 2E-11 88.1 15.7 360 142-579 84-448 (550)
78 COG5240 SEC21 Vesicle coat com 98.6 0.0015 3.3E-08 70.0 41.6 409 103-579 22-444 (898)
79 KOG1059 Vesicle coat complex A 98.6 0.0023 4.9E-08 70.8 41.2 112 97-215 138-249 (877)
80 KOG1240 Protein kinase contain 98.6 9.2E-06 2E-10 93.9 23.2 301 187-536 425-729 (1431)
81 KOG2032 Uncharacterized conser 98.6 3.5E-05 7.6E-10 81.0 25.4 165 375-540 215-379 (533)
82 PF03810 IBN_N: Importin-beta 98.6 2.9E-07 6.2E-12 75.0 8.1 67 42-113 1-76 (77)
83 KOG1059 Vesicle coat complex A 98.5 0.0011 2.3E-08 73.2 35.3 260 139-446 140-400 (877)
84 KOG1820 Microtubule-associated 98.5 1.1E-05 2.4E-10 93.6 21.2 208 372-592 248-458 (815)
85 KOG0414 Chromosome condensatio 98.5 0.0088 1.9E-07 70.4 67.3 159 141-303 268-428 (1251)
86 cd00020 ARM Armadillo/beta-cat 98.4 2.9E-06 6.2E-11 76.8 10.3 111 378-490 8-120 (120)
87 PF03378 CAS_CSE1: CAS/CSE pro 98.3 0.0011 2.4E-08 73.1 31.7 237 493-784 16-259 (435)
88 PF12755 Vac14_Fab1_bd: Vacuol 98.3 5.4E-06 1.2E-10 69.2 10.3 95 898-999 2-96 (97)
89 KOG1077 Vesicle coat complex A 98.3 0.0054 1.2E-07 67.7 35.2 385 151-595 82-487 (938)
90 KOG1058 Vesicle coat complex C 98.3 0.012 2.7E-07 65.6 37.0 173 244-450 293-466 (948)
91 PF13513 HEAT_EZ: HEAT-like re 98.3 2E-06 4.3E-11 64.3 5.8 55 391-445 1-55 (55)
92 KOG1967 DNA repair/transcripti 98.2 0.021 4.5E-07 65.5 61.6 135 920-1065 864-1005(1030)
93 KOG2259 Uncharacterized conser 98.2 0.0035 7.6E-08 68.7 30.6 295 183-536 197-515 (823)
94 KOG2956 CLIP-associating prote 98.2 0.00018 3.9E-09 75.3 19.7 203 377-593 287-493 (516)
95 KOG1061 Vesicle coat complex A 98.2 0.0018 4E-08 72.7 28.6 430 25-531 89-527 (734)
96 KOG4535 HEAT and armadillo rep 98.2 0.0023 5E-08 67.1 27.1 432 117-577 9-559 (728)
97 KOG0168 Putative ubiquitin fus 98.2 0.0023 4.9E-08 72.1 28.7 157 416-579 209-366 (1051)
98 KOG0168 Putative ubiquitin fus 98.1 0.0047 1E-07 69.7 30.5 372 144-552 168-651 (1051)
99 KOG1078 Vesicle coat complex C 98.1 0.031 6.7E-07 63.0 37.1 290 181-533 242-533 (865)
100 PF05804 KAP: Kinesin-associat 98.1 0.014 3E-07 67.9 35.1 373 117-534 263-651 (708)
101 KOG1058 Vesicle coat complex C 98.1 0.032 7E-07 62.4 35.2 146 373-535 313-466 (948)
102 KOG2021 Nuclear mRNA export fa 98.1 0.038 8.2E-07 61.9 51.2 187 854-1048 549-773 (980)
103 KOG4413 26S proteasome regulat 98.0 0.019 4E-07 57.5 29.5 351 156-532 53-439 (524)
104 PF08389 Xpo1: Exportin 1-like 98.0 3.4E-05 7.3E-10 72.8 10.7 128 118-255 2-148 (148)
105 KOG4535 HEAT and armadillo rep 98.0 0.0051 1.1E-07 64.7 25.3 308 393-738 271-599 (728)
106 COG5096 Vesicle coat complex, 98.0 0.07 1.5E-06 61.8 38.9 137 23-173 56-196 (757)
107 KOG1293 Proteins containing ar 98.0 0.029 6.4E-07 62.0 32.1 146 388-535 388-536 (678)
108 KOG4413 26S proteasome regulat 98.0 0.017 3.7E-07 57.8 27.5 289 124-450 63-380 (524)
109 cd00020 ARM Armadillo/beta-cat 98.0 2.2E-05 4.8E-10 71.0 7.6 111 419-531 8-119 (120)
110 KOG2956 CLIP-associating prote 98.0 0.00027 5.8E-09 74.1 15.9 170 374-552 326-498 (516)
111 KOG1410 Nuclear transport rece 97.9 0.057 1.2E-06 59.6 50.2 146 21-173 4-158 (1082)
112 COG5656 SXM1 Importin, protein 97.9 0.068 1.5E-06 59.9 68.8 499 102-642 3-588 (970)
113 KOG2259 Uncharacterized conser 97.9 0.017 3.7E-07 63.6 28.8 292 236-580 203-514 (823)
114 PF13513 HEAT_EZ: HEAT-like re 97.9 1.9E-05 4.1E-10 59.0 5.0 55 432-488 1-55 (55)
115 KOG2032 Uncharacterized conser 97.9 0.01 2.2E-07 63.2 25.8 278 127-447 237-531 (533)
116 PF12717 Cnd1: non-SMC mitotic 97.8 0.00076 1.6E-08 65.2 15.1 108 390-506 1-108 (178)
117 PF04510 DUF577: Family of unk 97.8 0.0025 5.5E-08 57.9 16.8 154 103-260 3-164 (174)
118 PF08167 RIX1: rRNA processing 97.8 0.00071 1.5E-08 64.0 14.3 138 414-553 21-164 (165)
119 KOG1077 Vesicle coat complex A 97.8 0.12 2.5E-06 57.7 39.4 317 102-463 110-448 (938)
120 PF13646 HEAT_2: HEAT repeats; 97.7 0.00025 5.3E-09 59.6 9.4 86 380-486 2-88 (88)
121 PF12717 Cnd1: non-SMC mitotic 97.7 0.00083 1.8E-08 64.9 14.0 135 156-303 1-139 (178)
122 PF14500 MMS19_N: Dos2-interac 97.7 0.017 3.6E-07 59.2 23.4 247 147-424 3-256 (262)
123 PF10274 ParcG: Parkin co-regu 97.7 0.00072 1.6E-08 63.1 12.0 96 458-554 36-134 (183)
124 KOG2933 Uncharacterized conser 97.7 0.0012 2.7E-08 65.6 14.2 149 378-535 89-237 (334)
125 KOG1078 Vesicle coat complex C 97.7 0.19 4.1E-06 57.0 41.0 362 140-580 61-424 (865)
126 PLN03076 ARF guanine nucleotid 97.6 0.5 1.1E-05 61.3 43.0 198 68-268 1148-1384(1780)
127 COG5096 Vesicle coat complex, 97.6 0.24 5.3E-06 57.5 37.3 165 32-215 29-196 (757)
128 PF05804 KAP: Kinesin-associat 97.6 0.04 8.8E-07 64.2 27.9 303 142-491 330-650 (708)
129 PLN03076 ARF guanine nucleotid 97.6 0.12 2.7E-06 66.5 33.8 355 95-471 1081-1513(1780)
130 PF03378 CAS_CSE1: CAS/CSE pro 97.6 0.011 2.4E-07 65.3 21.9 309 225-556 20-351 (435)
131 PF05004 IFRD: Interferon-rela 97.5 0.016 3.4E-07 61.2 21.9 198 424-625 49-260 (309)
132 KOG0891 DNA-dependent protein 97.5 0.76 1.7E-05 60.8 65.5 267 423-741 486-762 (2341)
133 KOG4653 Uncharacterized conser 97.5 0.013 2.8E-07 66.6 21.2 233 462-743 729-965 (982)
134 PF08167 RIX1: rRNA processing 97.5 0.0031 6.6E-08 59.7 14.4 139 140-280 22-163 (165)
135 KOG1820 Microtubule-associated 97.5 0.0049 1.1E-07 72.3 18.4 165 374-546 292-458 (815)
136 PF04826 Arm_2: Armadillo-like 97.4 0.0084 1.8E-07 60.8 17.6 191 379-581 14-209 (254)
137 cd00256 VATPase_H VATPase_H, r 97.4 0.2 4.2E-06 54.8 28.6 353 53-446 50-424 (429)
138 PF14500 MMS19_N: Dos2-interac 97.4 0.057 1.2E-06 55.3 23.3 245 189-466 4-256 (262)
139 PF08506 Cse1: Cse1; InterPro 97.4 0.26 5.5E-06 53.5 29.3 131 391-527 225-370 (370)
140 PF13646 HEAT_2: HEAT repeats; 97.4 0.00076 1.6E-08 56.6 8.2 86 420-528 1-88 (88)
141 PF11864 DUF3384: Domain of un 97.4 0.4 8.6E-06 54.5 32.6 313 120-465 6-349 (464)
142 PF13251 DUF4042: Domain of un 97.4 0.002 4.3E-08 61.0 11.4 143 392-534 1-176 (182)
143 PF05918 API5: Apoptosis inhib 97.4 0.13 2.9E-06 57.6 27.1 195 68-281 33-228 (556)
144 PF05004 IFRD: Interferon-rela 97.3 0.033 7.1E-07 58.9 21.2 208 385-598 51-281 (309)
145 KOG0889 Histone acetyltransfer 97.3 1.4 2.9E-05 59.4 49.5 535 166-742 700-1306(3550)
146 KOG0392 SNF2 family DNA-depend 97.3 0.81 1.8E-05 55.1 46.3 156 139-304 71-238 (1549)
147 KOG4653 Uncharacterized conser 97.2 0.04 8.7E-07 62.8 21.0 220 386-620 736-962 (982)
148 PF02985 HEAT: HEAT repeat; I 97.2 0.00046 9.9E-09 43.8 3.7 30 419-448 1-30 (31)
149 KOG1517 Guanine nucleotide bin 97.2 0.036 7.7E-07 64.4 20.8 147 390-537 570-737 (1387)
150 PF02985 HEAT: HEAT repeat; I 97.2 0.00049 1.1E-08 43.7 3.7 30 924-953 1-30 (31)
151 PF13251 DUF4042: Domain of un 97.2 0.0055 1.2E-07 58.0 12.3 141 119-262 1-176 (182)
152 KOG1525 Sister chromatid cohes 97.2 1.1 2.4E-05 55.9 37.0 130 359-491 243-406 (1266)
153 KOG2160 Armadillo/beta-catenin 97.1 0.028 6.1E-07 58.0 17.1 148 388-537 94-245 (342)
154 KOG0946 ER-Golgi vesicle-tethe 97.1 0.4 8.6E-06 54.6 26.9 342 101-465 20-416 (970)
155 PF05918 API5: Apoptosis inhib 97.1 0.18 4E-06 56.6 24.6 294 684-1043 35-349 (556)
156 KOG0946 ER-Golgi vesicle-tethe 97.1 0.81 1.8E-05 52.2 41.1 116 142-262 121-243 (970)
157 KOG4500 Rho/Rac GTPase guanine 97.1 0.43 9.3E-06 50.3 25.0 154 376-533 314-476 (604)
158 PF04826 Arm_2: Armadillo-like 97.0 0.021 4.6E-07 57.9 15.3 186 106-303 15-205 (254)
159 KOG2759 Vacuolar H+-ATPase V1 97.0 0.62 1.3E-05 49.3 25.8 353 56-447 65-438 (442)
160 PF12231 Rif1_N: Rap1-interact 96.9 0.88 1.9E-05 50.0 31.3 296 198-555 6-329 (372)
161 PF10274 ParcG: Parkin co-regu 96.9 0.013 2.9E-07 54.8 11.7 92 881-973 38-133 (183)
162 PF11865 DUF3385: Domain of un 96.9 0.012 2.6E-07 55.2 11.2 147 374-534 7-159 (160)
163 PF08064 UME: UME (NUC010) dom 96.9 0.014 2.9E-07 50.4 10.5 97 497-599 5-105 (107)
164 COG1413 FOG: HEAT repeat [Ener 96.8 0.59 1.3E-05 51.0 25.4 261 184-531 43-303 (335)
165 smart00802 UME Domain in UVSB 96.7 0.021 4.6E-07 48.6 10.2 95 497-597 5-103 (107)
166 KOG1949 Uncharacterized conser 96.6 0.19 4.1E-06 56.1 19.2 219 68-303 99-331 (1005)
167 COG1413 FOG: HEAT repeat [Ener 96.6 1 2.2E-05 49.2 25.8 254 142-491 42-305 (335)
168 PF12719 Cnd3: Nuclear condens 96.6 0.21 4.6E-06 53.1 19.4 167 380-555 30-208 (298)
169 PF10521 DUF2454: Protein of u 96.5 0.054 1.2E-06 56.7 14.4 167 389-556 87-277 (282)
170 cd00256 VATPase_H VATPase_H, r 96.5 1.6 3.6E-05 47.8 25.6 72 459-531 352-424 (429)
171 KOG4524 Uncharacterized conser 96.5 2.8 6E-05 49.5 53.9 167 892-1058 813-994 (1014)
172 KOG1837 Uncharacterized conser 96.4 2.4 5.2E-05 52.7 28.5 100 856-960 1520-1619(1621)
173 TIGR02270 conserved hypothetic 96.4 1.5 3.2E-05 48.4 25.1 242 104-447 55-296 (410)
174 KOG4524 Uncharacterized conser 96.4 3.1 6.7E-05 49.2 46.6 73 143-216 278-350 (1014)
175 KOG1293 Proteins containing ar 96.4 2.4 5.1E-05 47.7 34.5 472 69-575 21-531 (678)
176 KOG1517 Guanine nucleotide bin 96.4 0.19 4.1E-06 58.8 18.2 183 21-216 471-673 (1387)
177 KOG2062 26S proteasome regulat 96.4 0.049 1.1E-06 61.0 13.1 157 378-556 520-677 (929)
178 KOG2025 Chromosome condensatio 96.3 1.3 2.7E-05 50.1 23.4 110 96-210 78-189 (892)
179 PF13001 Ecm29: Proteasome sta 96.3 2.8 6.2E-05 48.1 29.6 83 24-114 25-113 (501)
180 COG5116 RPN2 26S proteasome re 96.3 0.042 9E-07 59.3 11.5 153 381-555 520-673 (926)
181 KOG0413 Uncharacterized conser 96.2 3.6 7.8E-05 48.3 27.1 144 391-550 945-1089(1529)
182 KOG1243 Protein kinase [Genera 96.0 0.13 2.9E-06 57.8 14.5 254 242-535 265-518 (690)
183 PF13001 Ecm29: Proteasome sta 95.9 4.5 9.7E-05 46.5 28.4 175 356-537 255-448 (501)
184 TIGR02270 conserved hypothetic 95.9 0.38 8.2E-06 52.9 17.2 151 58-259 56-206 (410)
185 KOG2149 Uncharacterized conser 95.9 0.18 3.9E-06 53.1 13.8 132 421-554 61-192 (393)
186 KOG2933 Uncharacterized conser 95.8 0.1 2.2E-06 52.5 11.1 127 358-493 108-237 (334)
187 PF12719 Cnd3: Nuclear condens 95.8 0.93 2E-05 48.2 19.4 110 102-215 26-144 (298)
188 PF08064 UME: UME (NUC010) dom 95.8 0.097 2.1E-06 45.1 9.6 99 411-513 4-106 (107)
189 PF01603 B56: Protein phosphat 95.6 1.2 2.7E-05 49.4 20.3 237 20-268 131-378 (409)
190 smart00802 UME Domain in UVSB 95.6 0.1 2.2E-06 44.6 9.0 98 411-512 4-105 (107)
191 PF11865 DUF3385: Domain of un 95.5 0.13 2.8E-06 48.3 10.4 145 415-577 7-157 (160)
192 KOG2160 Armadillo/beta-catenin 95.5 0.32 6.9E-06 50.5 13.7 146 154-304 94-241 (342)
193 PF05536 Neurochondrin: Neuroc 95.5 6.7 0.00015 45.4 30.1 186 391-582 71-266 (543)
194 PF08623 TIP120: TATA-binding 95.4 0.067 1.5E-06 49.7 7.8 102 958-1065 3-116 (169)
195 PF08569 Mo25: Mo25-like; Int 95.4 4.7 0.0001 43.1 24.9 180 117-304 89-284 (335)
196 KOG1851 Uncharacterized conser 95.4 11 0.00024 47.3 32.2 177 355-537 1504-1683(1710)
197 PF01603 B56: Protein phosphat 95.4 3.2 7E-05 46.2 22.3 115 182-303 253-370 (409)
198 PF12054 DUF3535: Domain of un 95.1 2.8 6.1E-05 46.9 20.9 244 391-647 101-367 (441)
199 COG5095 TAF6 Transcription ini 95.1 1.1 2.3E-05 44.8 15.1 150 413-578 196-360 (450)
200 PF10521 DUF2454: Protein of u 94.9 0.84 1.8E-05 47.9 15.2 146 451-599 111-274 (282)
201 PF08767 CRM1_C: CRM1 C termin 94.9 3.4 7.3E-05 44.2 19.9 136 860-1000 92-245 (319)
202 KOG0803 Predicted E3 ubiquitin 94.8 3.1 6.6E-05 52.2 21.5 108 187-301 44-151 (1312)
203 PF11864 DUF3384: Domain of un 94.8 9.8 0.00021 43.4 37.4 243 37-303 5-285 (464)
204 KOG2549 Transcription initiati 94.7 2.5 5.4E-05 46.6 18.1 147 414-577 207-370 (576)
205 KOG0889 Histone acetyltransfer 94.7 27 0.00059 48.1 54.0 103 198-304 20-127 (3550)
206 KOG2122 Beta-catenin-binding p 94.5 18 0.00039 45.2 25.8 76 922-1004 529-606 (2195)
207 PF08767 CRM1_C: CRM1 C termin 94.5 5.6 0.00012 42.5 20.5 101 389-489 132-243 (319)
208 KOG2025 Chromosome condensatio 94.5 12 0.00025 42.9 35.7 109 372-485 80-188 (892)
209 PF10363 DUF2435: Protein of u 94.4 0.33 7.1E-06 40.3 8.6 65 892-957 13-77 (92)
210 PF03224 V-ATPase_H_N: V-ATPas 94.3 7.4 0.00016 41.8 21.1 202 53-265 52-274 (312)
211 KOG2149 Uncharacterized conser 94.2 0.82 1.8E-05 48.4 12.9 127 384-512 65-191 (393)
212 KOG1949 Uncharacterized conser 94.2 0.6 1.3E-05 52.4 12.2 146 379-531 176-330 (1005)
213 COG5218 YCG1 Chromosome conden 94.1 3.4 7.3E-05 45.7 17.4 174 61-255 13-194 (885)
214 KOG0413 Uncharacterized conser 94.0 17 0.00037 43.1 42.5 76 183-266 575-651 (1529)
215 PF08623 TIP120: TATA-binding 94.0 0.2 4.3E-06 46.7 7.2 106 894-1002 39-150 (169)
216 KOG2759 Vacuolar H+-ATPase V1 94.0 10 0.00022 40.6 26.1 72 418-490 366-438 (442)
217 PF12054 DUF3535: Domain of un 94.0 7.1 0.00015 43.8 20.7 77 432-513 101-178 (441)
218 COG5657 CSE1 CAS/CSE protein i 93.8 19 0.0004 42.7 34.2 96 920-1018 530-626 (947)
219 KOG1243 Protein kinase [Genera 93.8 1.5 3.3E-05 49.8 14.7 192 269-493 327-518 (690)
220 KOG2549 Transcription initiati 93.7 2.1 4.5E-05 47.2 15.2 139 375-514 237-394 (576)
221 KOG2022 Nuclear transport rece 93.7 18 0.0004 42.6 72.7 396 519-1002 440-870 (982)
222 KOG2137 Protein kinase [Signal 93.7 13 0.00029 42.8 21.8 111 140-260 386-496 (700)
223 PF12530 DUF3730: Protein of u 93.6 9.4 0.0002 38.8 20.2 194 33-246 12-218 (234)
224 cd08050 TAF6 TATA Binding Prot 93.5 0.75 1.6E-05 49.6 11.8 123 423-556 183-321 (343)
225 COG5095 TAF6 Transcription ini 93.5 5.6 0.00012 40.0 16.2 99 856-954 252-361 (450)
226 PF12231 Rif1_N: Rap1-interact 93.4 15 0.00032 40.4 34.8 166 411-582 32-209 (372)
227 PF08161 NUC173: NUC173 domain 93.4 2 4.4E-05 41.9 13.3 188 508-740 5-197 (198)
228 PF04118 Dopey_N: Dopey, N-ter 93.3 2.6 5.7E-05 44.2 14.9 154 382-537 16-172 (307)
229 KOG4500 Rho/Rac GTPase guanine 93.3 8.5 0.00018 41.1 18.1 234 60-304 227-476 (604)
230 KOG2137 Protein kinase [Signal 93.3 19 0.00042 41.6 23.6 175 317-515 345-520 (700)
231 PF10363 DUF2435: Protein of u 93.3 0.88 1.9E-05 37.8 9.2 74 461-537 4-77 (92)
232 PF04118 Dopey_N: Dopey, N-ter 93.1 13 0.00028 39.1 20.8 111 410-529 130-251 (307)
233 COG5116 RPN2 26S proteasome re 93.0 0.62 1.3E-05 50.8 9.9 115 386-517 561-676 (926)
234 cd08050 TAF6 TATA Binding Prot 92.8 0.92 2E-05 48.9 11.2 127 361-488 198-338 (343)
235 KOG0414 Chromosome condensatio 92.8 30 0.00066 42.4 58.7 132 357-493 294-431 (1251)
236 KOG3036 Protein involved in ce 92.7 11 0.00024 37.1 18.6 232 1-260 1-247 (293)
237 KOG0567 HEAT repeat-containing 92.6 6.6 0.00014 39.2 15.2 59 419-489 68-128 (289)
238 PF00790 VHS: VHS domain; Int 92.4 2.6 5.7E-05 38.7 12.1 95 499-593 38-134 (140)
239 KOG1848 Uncharacterized conser 92.3 8.3 0.00018 47.6 18.6 82 923-1004 997-1087(1610)
240 PF05536 Neurochondrin: Neuroc 91.9 29 0.00063 40.3 33.9 235 58-304 7-262 (543)
241 COG5218 YCG1 Chromosome conden 91.4 28 0.0006 39.0 22.4 218 180-444 45-263 (885)
242 cd03561 VHS VHS domain family; 91.0 3.6 7.8E-05 37.3 11.2 78 417-494 36-116 (133)
243 KOG1048 Neural adherens juncti 90.9 33 0.00072 40.1 20.8 106 384-491 240-350 (717)
244 KOG3961 Uncharacterized conser 90.6 1 2.2E-05 42.7 7.2 93 458-552 112-207 (262)
245 cd03568 VHS_STAM VHS domain fa 90.6 3.7 8E-05 37.7 10.9 78 417-494 36-114 (144)
246 KOG1822 Uncharacterized conser 90.5 67 0.0015 41.9 64.6 148 59-215 54-207 (2067)
247 PF01347 Vitellogenin_N: Lipop 90.4 7.5 0.00016 46.7 16.8 120 389-527 447-584 (618)
248 KOG1048 Neural adherens juncti 90.0 45 0.00098 39.1 27.4 116 141-261 230-350 (717)
249 smart00638 LPD_N Lipoprotein N 90.0 23 0.00049 42.0 20.1 134 377-527 393-540 (574)
250 PF14664 RICTOR_N: Rapamycin-i 89.8 34 0.00073 37.5 19.3 150 139-303 21-176 (371)
251 cd03569 VHS_Hrs_Vps27p VHS dom 89.7 6.3 0.00014 36.1 11.6 79 417-495 40-119 (142)
252 KOG1822 Uncharacterized conser 89.6 79 0.0017 41.3 65.1 192 106-304 54-249 (2067)
253 PF00514 Arm: Armadillo/beta-c 89.0 0.81 1.7E-05 31.3 4.1 29 418-446 12-40 (41)
254 PF03224 V-ATPase_H_N: V-ATPas 88.8 17 0.00036 39.0 16.2 151 145-303 107-269 (312)
255 KOG2062 26S proteasome regulat 88.8 53 0.0011 38.2 43.1 109 854-976 569-677 (929)
256 PF12530 DUF3730: Protein of u 88.7 30 0.00064 35.2 19.0 182 769-1003 2-189 (234)
257 PF00514 Arm: Armadillo/beta-c 88.7 0.78 1.7E-05 31.3 3.9 29 923-951 12-40 (41)
258 PF04078 Rcd1: Cell differenti 88.4 4.2 9.1E-05 40.8 10.1 135 860-1000 70-219 (262)
259 PF12830 Nipped-B_C: Sister ch 88.3 14 0.00031 35.9 13.9 65 23-88 9-76 (187)
260 cd03568 VHS_STAM VHS domain fa 88.3 5.8 0.00013 36.4 10.3 76 376-451 36-114 (144)
261 PF08389 Xpo1: Exportin 1-like 87.5 3.3 7.3E-05 38.5 8.9 128 432-572 2-148 (148)
262 PF11698 V-ATPase_H_C: V-ATPas 87.3 2.5 5.5E-05 36.7 6.9 70 418-490 43-115 (119)
263 PF00790 VHS: VHS domain; Int 86.9 7.2 0.00016 35.8 10.3 79 416-494 40-122 (140)
264 PF12074 DUF3554: Domain of un 86.9 51 0.0011 35.9 21.4 221 100-333 19-256 (339)
265 PF12333 Ipi1_N: Rix1 complex 86.7 5.6 0.00012 34.0 8.8 62 410-471 3-64 (102)
266 smart00288 VHS Domain present 86.6 15 0.00033 33.3 12.0 80 500-581 34-115 (133)
267 PF01347 Vitellogenin_N: Lipop 86.4 58 0.0013 39.1 20.7 96 181-299 487-585 (618)
268 smart00288 VHS Domain present 86.3 8.3 0.00018 34.9 10.2 78 417-494 36-115 (133)
269 KOG3036 Protein involved in ce 86.1 22 0.00047 35.2 13.0 113 882-999 125-247 (293)
270 cd03567 VHS_GGA VHS domain fam 85.3 18 0.0004 32.9 11.7 76 418-493 38-119 (139)
271 PF08569 Mo25: Mo25-like; Int 85.0 60 0.0013 34.9 21.3 190 68-262 87-285 (335)
272 KOG2122 Beta-catenin-binding p 85.0 1.2E+02 0.0027 38.5 25.2 73 418-491 530-602 (2195)
273 PF11698 V-ATPase_H_C: V-ATPas 84.8 4.5 9.7E-05 35.2 7.1 67 886-953 48-116 (119)
274 cd03569 VHS_Hrs_Vps27p VHS dom 84.8 12 0.00027 34.2 10.6 78 141-218 39-118 (142)
275 KOG1222 Kinesin associated pro 84.2 70 0.0015 35.0 22.9 93 394-488 280-372 (791)
276 cd03561 VHS VHS domain family; 84.2 19 0.00042 32.6 11.6 96 852-956 16-116 (133)
277 cd03567 VHS_GGA VHS domain fam 84.2 26 0.00056 31.9 12.2 96 852-956 17-120 (139)
278 KOG0929 Guanine nucleotide exc 84.0 65 0.0014 41.4 19.1 160 116-281 1049-1225(1514)
279 PF12333 Ipi1_N: Rix1 complex 83.6 3.5 7.5E-05 35.3 6.1 62 495-556 3-65 (102)
280 KOG1851 Uncharacterized conser 83.4 1.5E+02 0.0032 38.2 35.8 182 432-626 1501-1682(1710)
281 COG5231 VMA13 Vacuolar H+-ATPa 82.8 63 0.0014 33.4 19.4 70 378-447 357-428 (432)
282 KOG2199 Signal transducing ada 82.5 10 0.00023 39.8 9.8 105 383-495 18-123 (462)
283 PF12765 Cohesin_HEAT: HEAT re 81.7 2.1 4.6E-05 29.4 3.3 25 417-441 17-41 (42)
284 PF12830 Nipped-B_C: Sister ch 81.6 39 0.00085 32.8 13.4 85 182-277 6-91 (187)
285 PF11701 UNC45-central: Myosin 81.4 21 0.00046 33.5 11.0 133 68-210 16-155 (157)
286 PF09324 DUF1981: Domain of un 81.1 15 0.00033 30.1 8.7 71 181-256 14-84 (86)
287 KOG3961 Uncharacterized conser 81.0 4.1 8.8E-05 38.8 5.9 77 898-975 130-209 (262)
288 PF11919 DUF3437: Domain of un 81.0 5 0.00011 33.1 5.8 60 938-1004 4-63 (90)
289 PF11919 DUF3437: Domain of un 80.4 3 6.5E-05 34.4 4.3 61 392-453 4-64 (90)
290 smart00638 LPD_N Lipoprotein N 80.0 1.4E+02 0.003 35.5 23.9 150 142-303 356-509 (574)
291 PF04078 Rcd1: Cell differenti 79.8 73 0.0016 32.3 17.0 74 141-215 92-169 (262)
292 PF08146 BP28CT: BP28CT (NUC21 79.7 32 0.00069 32.1 11.4 98 859-956 40-151 (153)
293 KOG2011 Sister chromatid cohes 79.4 1.2E+02 0.0026 37.6 18.5 129 394-526 262-393 (1048)
294 PF12397 U3snoRNP10: U3 small 79.2 24 0.00052 31.4 10.2 73 373-448 2-75 (121)
295 PF04388 Hamartin: Hamartin pr 78.6 20 0.00043 42.8 12.1 93 960-1064 66-161 (668)
296 KOG2213 Apoptosis inhibitor 5/ 78.5 1E+02 0.0022 33.1 17.6 60 476-535 256-317 (460)
297 PF08161 NUC173: NUC173 domain 78.0 72 0.0016 31.2 14.6 57 397-453 20-76 (198)
298 PF14225 MOR2-PAG1_C: Cell mor 77.9 74 0.0016 32.8 14.4 125 119-260 130-254 (262)
299 KOG2005 26S proteasome regulat 77.5 1.4E+02 0.0031 34.4 17.0 82 377-468 640-721 (878)
300 PF12074 DUF3554: Domain of un 77.5 1.1E+02 0.0025 33.2 20.6 176 372-554 56-254 (339)
301 cd03565 VHS_Tom1 VHS domain fa 77.3 35 0.00075 31.3 10.7 92 417-508 37-133 (141)
302 PF04388 Hamartin: Hamartin pr 77.3 98 0.0021 37.1 17.3 94 180-281 66-161 (668)
303 COG5369 Uncharacterized conser 76.9 9.4 0.0002 42.0 7.8 137 394-532 406-545 (743)
304 COG5101 CRM1 Importin beta-rel 76.7 1.5E+02 0.0032 34.0 53.2 74 139-215 188-262 (1053)
305 KOG1789 Endocytosis protein RM 76.0 2E+02 0.0043 35.3 24.5 138 158-303 1740-1883(2235)
306 cd00197 VHS_ENTH_ANTH VHS, ENT 75.7 36 0.00078 29.9 10.3 73 373-445 33-113 (115)
307 KOG2081 Nuclear transport regu 74.9 1.6E+02 0.0034 33.5 39.3 154 429-594 400-553 (559)
308 cd03572 ENTH_epsin_related ENT 74.3 23 0.00049 31.3 8.2 76 500-575 35-117 (122)
309 KOG0803 Predicted E3 ubiquitin 73.7 1.7E+02 0.0038 37.6 18.5 105 383-489 47-152 (1312)
310 PF14664 RICTOR_N: Rapamycin-i 73.7 1.5E+02 0.0032 32.6 21.8 231 231-491 25-270 (371)
311 PF09324 DUF1981: Domain of un 73.7 25 0.00055 28.9 8.0 59 386-444 27-85 (86)
312 PF08713 DNA_alkylation: DNA a 73.2 6.3 0.00014 39.5 5.5 70 376-451 119-188 (213)
313 PF12726 SEN1_N: SEN1 N termin 72.9 2.4E+02 0.0051 34.7 34.9 123 417-540 119-251 (727)
314 KOG2973 Uncharacterized conser 72.9 31 0.00067 35.5 9.7 104 382-490 8-111 (353)
315 KOG3678 SARM protein (with ste 72.3 99 0.0021 33.7 13.7 67 893-959 233-300 (832)
316 KOG4199 Uncharacterized conser 72.0 1.3E+02 0.0029 31.5 28.4 308 386-742 116-444 (461)
317 PF14225 MOR2-PAG1_C: Cell mor 71.7 1.1E+02 0.0024 31.5 13.9 75 456-536 184-258 (262)
318 PF07571 DUF1546: Protein of u 71.0 20 0.00044 29.9 7.0 61 154-214 17-78 (92)
319 PF07571 DUF1546: Protein of u 70.7 14 0.0003 30.9 5.9 59 388-446 17-77 (92)
320 KOG2256 Predicted protein invo 70.5 2.1E+02 0.0046 33.1 18.9 180 458-639 280-473 (661)
321 PF11935 DUF3453: Domain of un 69.4 1.4E+02 0.003 30.5 15.9 126 193-329 2-161 (239)
322 KOG2085 Serine/threonine prote 69.3 79 0.0017 34.1 12.1 246 28-303 157-414 (457)
323 PF11701 UNC45-central: Myosin 68.8 31 0.00068 32.4 8.6 130 355-487 22-156 (157)
324 smart00185 ARM Armadillo/beta- 67.9 7.3 0.00016 26.2 3.2 28 419-446 13-40 (41)
325 PF11841 DUF3361: Domain of un 66.5 90 0.0019 29.1 10.6 97 860-957 37-136 (160)
326 cd03565 VHS_Tom1 VHS domain fa 66.0 1.1E+02 0.0024 28.1 12.1 94 500-594 35-132 (141)
327 PF12765 Cohesin_HEAT: HEAT re 66.0 12 0.00027 25.6 3.9 40 167-209 3-42 (42)
328 cd06561 AlkD_like A new struct 65.9 23 0.0005 34.8 7.7 67 380-451 108-174 (197)
329 KOG0929 Guanine nucleotide exc 65.8 3E+02 0.0065 35.8 18.0 233 387-630 1047-1306(1514)
330 cd00197 VHS_ENTH_ANTH VHS, ENT 65.5 90 0.0019 27.4 10.5 74 415-488 34-113 (115)
331 smart00185 ARM Armadillo/beta- 64.4 9.4 0.0002 25.7 3.2 28 924-951 13-40 (41)
332 PF12783 Sec7_N: Guanine nucle 64.1 1.3E+02 0.0028 28.6 12.1 106 198-303 35-146 (168)
333 PF14668 RICTOR_V: Rapamycin-i 63.9 20 0.00043 28.3 5.1 55 393-449 3-60 (73)
334 PF12726 SEN1_N: SEN1 N termin 63.9 3.5E+02 0.0076 33.2 40.9 150 57-217 78-246 (727)
335 PF04510 DUF577: Family of unk 63.5 66 0.0014 30.2 9.1 73 901-977 20-97 (174)
336 KOG2256 Predicted protein invo 63.4 2.9E+02 0.0063 32.1 19.5 35 181-216 279-313 (661)
337 KOG0567 HEAT repeat-containing 63.2 1.8E+02 0.0039 29.6 21.4 95 419-535 188-283 (289)
338 cd03572 ENTH_epsin_related ENT 62.7 79 0.0017 28.0 9.1 93 905-998 21-118 (122)
339 cd00872 PI3Ka_I Phosphoinositi 61.7 95 0.0021 29.5 10.2 81 20-116 37-118 (171)
340 PF08713 DNA_alkylation: DNA a 61.7 1.8E+02 0.0038 29.0 15.0 152 36-215 33-185 (213)
341 PF14868 DUF4487: Domain of un 61.6 3.1E+02 0.0068 31.9 25.1 74 120-195 244-318 (559)
342 PF03542 Tuberin: Tuberin; In 61.6 2.4E+02 0.0053 30.6 18.4 118 198-331 210-329 (356)
343 KOG1877 Putative transmembrane 59.9 3.9E+02 0.0084 32.4 18.1 98 689-798 74-175 (819)
344 KOG2038 CAATT-binding transcri 59.9 3.6E+02 0.0078 32.0 25.9 114 176-303 296-409 (988)
345 KOG2011 Sister chromatid cohes 59.4 2.7E+02 0.0059 34.7 15.6 134 154-301 298-433 (1048)
346 PF12783 Sec7_N: Guanine nucle 59.0 1.7E+02 0.0036 27.9 14.7 98 157-260 36-146 (168)
347 PF06685 DUF1186: Protein of u 59.0 1.8E+02 0.0039 29.7 12.2 48 966-1017 113-161 (249)
348 COG5369 Uncharacterized conser 56.8 1.8E+02 0.0039 32.7 12.3 155 378-533 432-595 (743)
349 COG5209 RCD1 Uncharacterized p 56.5 54 0.0012 31.9 7.5 58 896-953 160-219 (315)
350 KOG4199 Uncharacterized conser 56.0 2.7E+02 0.0059 29.4 30.6 316 139-489 104-443 (461)
351 PF14668 RICTOR_V: Rapamycin-i 55.7 31 0.00068 27.2 5.0 54 435-491 4-59 (73)
352 PF12397 U3snoRNP10: U3 small 55.4 55 0.0012 29.0 7.4 74 414-492 2-76 (121)
353 PF14631 FancD2: Fanconi anaem 54.9 1.3E+02 0.0028 39.6 13.1 166 400-578 417-582 (1426)
354 PF08146 BP28CT: BP28CT (NUC21 54.2 62 0.0013 30.2 7.7 82 563-644 36-118 (153)
355 KOG1087 Cytosolic sorting prot 53.9 1.3E+02 0.0028 33.8 11.2 117 468-596 13-132 (470)
356 PF14911 MMS22L_C: S-phase gen 53.1 3.4E+02 0.0073 29.6 21.1 42 703-745 60-101 (373)
357 PLN03205 ATR interacting prote 52.9 3.2E+02 0.007 29.4 17.9 136 122-259 302-445 (652)
358 cd00864 PI3Ka Phosphoinositide 52.7 1.1E+02 0.0023 28.5 9.0 81 20-116 37-118 (152)
359 KOG2199 Signal transducing ada 52.6 1E+02 0.0022 32.9 9.4 75 376-450 44-121 (462)
360 COG4912 Predicted DNA alkylati 52.2 79 0.0017 31.0 8.0 83 361-449 102-185 (222)
361 cd00870 PI3Ka_III Phosphoinosi 51.7 1.1E+02 0.0025 28.9 9.0 78 23-116 47-125 (166)
362 KOG1087 Cytosolic sorting prot 51.6 1.9E+02 0.0042 32.6 12.1 87 418-506 38-126 (470)
363 PF05327 RRN3: RNA polymerase 51.1 4.8E+02 0.01 30.8 22.9 52 921-972 344-397 (563)
364 PF12612 TFCD_C: Tubulin foldi 50.9 1.4E+02 0.0031 29.1 10.1 132 416-555 5-138 (193)
365 KOG1525 Sister chromatid cohes 49.4 7.2E+02 0.016 32.3 51.4 267 240-534 59-331 (1266)
366 PF07539 DRIM: Down-regulated 49.2 2.1E+02 0.0046 26.2 10.2 47 417-471 16-62 (141)
367 KOG1848 Uncharacterized conser 47.9 7.4E+02 0.016 32.0 26.9 153 116-268 854-1034(1610)
368 PF12243 CTK3: CTD kinase subu 47.8 87 0.0019 28.5 7.2 77 423-510 13-91 (139)
369 smart00145 PI3Ka Phosphoinosit 46.7 1.5E+02 0.0033 28.6 9.2 79 21-115 43-122 (184)
370 PF14838 INTS5_C: Integrator c 46.5 5.8E+02 0.013 30.5 24.3 85 193-278 319-407 (696)
371 PF11707 Npa1: Ribosome 60S bi 46.5 4.1E+02 0.0089 28.7 21.6 76 229-304 54-144 (330)
372 PF12612 TFCD_C: Tubulin foldi 45.6 3E+02 0.0065 26.9 15.0 150 99-260 3-158 (193)
373 PF01417 ENTH: ENTH domain; I 45.5 2.2E+02 0.0048 25.4 9.9 90 356-445 18-119 (125)
374 KOG1837 Uncharacterized conser 44.0 8.8E+02 0.019 31.8 37.6 82 501-587 1539-1620(1621)
375 COG5231 VMA13 Vacuolar H+-ATPa 40.5 4.6E+02 0.0099 27.6 21.7 72 418-490 356-428 (432)
376 cd03562 CID CID (CTD-Interacti 40.2 1.9E+02 0.0042 25.2 8.3 83 430-523 17-99 (114)
377 cd07064 AlkD_like_1 A new stru 39.6 1.5E+02 0.0033 29.4 8.4 78 376-460 114-191 (208)
378 PF14961 BROMI: Broad-minded p 39.0 4.8E+02 0.01 33.1 13.4 136 145-283 163-316 (1296)
379 PF03130 HEAT_PBS: PBS lyase H 37.8 51 0.0011 19.9 3.0 14 939-952 1-14 (27)
380 PF00613 PI3Ka: Phosphoinositi 36.9 96 0.0021 30.0 6.3 79 21-115 44-123 (184)
381 KOG2213 Apoptosis inhibitor 5/ 36.9 5.8E+02 0.013 27.7 23.2 53 685-742 38-90 (460)
382 KOG3678 SARM protein (with ste 36.6 6.3E+02 0.014 28.0 17.8 118 7-134 162-294 (832)
383 PF11841 DUF3361: Domain of un 36.3 3.7E+02 0.008 25.2 13.8 100 159-263 33-134 (160)
384 KOG1086 Cytosolic sorting prot 35.4 6.3E+02 0.014 27.7 14.3 69 149-217 51-126 (594)
385 smart00567 EZ_HEAT E-Z type HE 35.0 50 0.0011 20.4 2.7 14 391-404 1-14 (30)
386 PF11935 DUF3453: Domain of un 34.1 5.2E+02 0.011 26.3 15.6 93 182-275 41-160 (239)
387 PF10350 DUF2428: Putative dea 33.6 5.5E+02 0.012 26.5 13.9 77 860-936 168-253 (255)
388 KOG3687 Tuberin - Rap/ran-GTPa 33.4 1E+03 0.022 29.5 24.9 466 37-545 42-556 (1697)
389 KOG2973 Uncharacterized conser 32.9 6.1E+02 0.013 26.7 25.1 107 145-260 5-111 (353)
390 cd00869 PI3Ka_II Phosphoinosit 32.6 4.4E+02 0.0096 25.0 10.1 80 20-115 37-117 (169)
391 PF13925 Katanin_con80: con80 31.9 1.3E+02 0.0029 28.4 6.3 55 124-179 46-105 (164)
392 PF01465 GRIP: GRIP domain; I 31.3 1.1E+02 0.0024 21.5 4.1 33 100-133 4-36 (46)
393 COG5537 IRR1 Cohesin [Cell div 30.6 9.1E+02 0.02 28.0 15.6 116 412-531 268-385 (740)
394 PF09759 Atx10homo_assoc: Spin 30.4 1.1E+02 0.0025 26.0 4.8 58 899-956 3-63 (102)
395 COG5234 CIN1 Beta-tubulin fold 30.1 3.2E+02 0.0069 32.0 9.5 254 764-1058 243-505 (993)
396 PF05997 Nop52: Nucleolar prot 29.4 1.9E+02 0.004 29.0 7.1 73 423-495 5-77 (217)
397 KOG1222 Kinesin associated pro 29.4 8.4E+02 0.018 27.3 24.9 55 142-196 344-398 (791)
398 cd00869 PI3Ka_II Phosphoinosit 29.1 5.1E+02 0.011 24.6 10.1 97 36-156 21-118 (169)
399 PF06025 DUF913: Domain of Unk 29.0 2.1E+02 0.0046 31.5 8.1 150 853-1004 73-237 (379)
400 PF14676 FANCI_S2: FANCI solen 28.9 4.9E+02 0.011 24.4 9.5 117 76-209 37-156 (158)
401 KOG4646 Uncharacterized conser 28.4 4.5E+02 0.0097 23.8 11.1 101 384-490 24-128 (173)
402 cd00870 PI3Ka_III Phosphoinosi 27.9 5.3E+02 0.011 24.5 10.9 51 93-155 73-124 (166)
403 PF10193 Telomere_reg-2: Telom 27.4 2.4E+02 0.0051 24.8 6.5 69 926-996 6-79 (114)
404 PF04147 Nop14: Nop14-like fam 27.0 1.3E+03 0.029 28.8 15.7 126 937-1068 489-621 (840)
405 PF14961 BROMI: Broad-minded p 26.6 2E+02 0.0043 36.2 7.7 84 106-189 164-249 (1296)
406 PF06371 Drf_GBD: Diaphanous G 26.2 4.1E+02 0.0088 25.6 9.0 60 429-489 127-186 (187)
407 PF07539 DRIM: Down-regulated 26.0 4.7E+02 0.01 24.0 8.4 30 182-212 15-44 (141)
408 KOG2038 CAATT-binding transcri 26.0 1.2E+03 0.026 28.0 25.1 78 225-311 298-375 (988)
409 KOG2229 Protein required for a 25.7 1E+03 0.022 27.0 29.1 84 167-260 3-86 (616)
410 PF14676 FANCI_S2: FANCI solen 24.6 5.8E+02 0.013 24.0 8.9 83 163-256 75-157 (158)
411 PF03542 Tuberin: Tuberin; In 24.0 9.7E+02 0.021 26.2 18.6 77 897-976 212-288 (356)
412 PF14911 MMS22L_C: S-phase gen 23.6 1E+03 0.022 26.2 19.7 55 414-468 65-120 (373)
413 PF10350 DUF2428: Putative dea 23.4 8.3E+02 0.018 25.2 15.3 78 898-975 163-251 (255)
414 PF00613 PI3Ka: Phosphoinositi 23.1 4.7E+02 0.01 25.3 8.4 80 53-155 43-123 (184)
415 PF05327 RRN3: RNA polymerase 22.7 1.3E+03 0.028 27.2 27.3 49 162-215 55-104 (563)
416 PF14868 DUF4487: Domain of un 22.6 1.3E+03 0.028 27.1 27.2 104 431-535 451-555 (559)
417 PF10193 Telomere_reg-2: Telom 22.6 4.7E+02 0.01 22.9 7.5 82 500-587 4-88 (114)
418 cd00871 PI4Ka Phosphoinositide 22.6 6.8E+02 0.015 24.0 9.0 64 39-118 55-120 (175)
419 KOG2200 Tumour suppressor prot 22.5 2.5E+02 0.0054 32.1 6.9 134 902-1047 373-511 (674)
420 PF08620 RPAP1_C: RPAP1-like, 22.5 1.5E+02 0.0033 23.4 3.9 30 145-174 41-70 (73)
421 cd00872 PI3Ka_I Phosphoinositi 21.5 7.2E+02 0.016 23.7 10.2 96 36-155 21-117 (171)
422 PF14228 MOR2-PAG1_mid: Cell m 21.1 1.9E+03 0.04 28.5 26.1 58 897-954 931-988 (1120)
423 cd03571 ENTH_epsin ENTH domain 20.6 6.1E+02 0.013 22.6 9.9 90 355-444 15-115 (123)
424 PF14228 MOR2-PAG1_mid: Cell m 20.6 1.9E+03 0.042 28.4 16.6 53 249-303 934-986 (1120)
425 PF04499 SAPS: SIT4 phosphatas 20.1 1.3E+03 0.029 26.3 13.4 77 922-1003 61-152 (475)
No 1
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.5e-124 Score=1038.84 Aligned_cols=1024 Identities=46% Similarity=0.762 Sum_probs=943.1
Q ss_pred CChHHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHccCCCHHHHHHHHHHHHhhcccCCCCcccCCCH
Q 001487 19 PDSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSL 98 (1069)
Q Consensus 19 ~~~~~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~~p~~~~~~L~~il~~~~~~~~R~~a~i~L~~~i~~~~~~~w~~l~~ 98 (1069)
||.++|.+++..+.+|||++|++||+.|+....+ +. ..+.|.+++.++.++++|++|++++|+++.++ |+.++.
T Consensus 1 ~~~~~l~qLl~~l~spDn~vr~~Ae~~l~~~~~~-~~-~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~----w~~l~~ 74 (1075)
T KOG2171|consen 1 MDSAPLEQLLQQLLSPDNEVRRQAEEALETLAKT-EP-LLPALAHILATSADPQVRQLAAVLLRKLLTKH----WSRLSA 74 (1075)
T ss_pred CchhHHHHHHHHhcCCCchHHHHHHHHHHHhhcc-cc-hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH----hhcCCH
Confidence 5778999999999999999999999999976653 33 57899999999999999999999999999997 999999
Q ss_pred HHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCCChhHHHHHHHHHHHhhhhhhhhc
Q 001487 99 HTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTL 178 (1069)
Q Consensus 99 ~~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~ 178 (1069)
++++.||+.++..+.+|+.+.+|+.+|++++.|++.++|. .||+++++++++.+|+++..|+.|+.+|..+.+.++..+
T Consensus 75 e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e-~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~ 153 (1075)
T KOG2171|consen 75 EVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPE-KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTL 153 (1075)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcccc-chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhcccc
Confidence 9999999999999999999999999999999999999995 999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhC-CcchHhHHHhhHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 001487 179 TPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLT-SSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIE 257 (1069)
Q Consensus 179 ~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~-~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~l~~ 257 (1069)
.+|+..+.++|.++++++ +..||..|+++++.++...+ +....+.|..++|.++.++...+++++.+....++++|.+
T Consensus 154 ~~~~~~l~~lf~q~~~d~-s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~E 232 (1075)
T KOG2171|consen 154 QPHLDDLLRLFSQTMTDP-SSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIE 232 (1075)
T ss_pred chhHHHHHHHHHHhccCC-cchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHH
Confidence 999999999999999998 55599999999999999985 4556778999999999999999999999999999999999
Q ss_pred HHccccHHHHHhHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCc
Q 001487 258 LAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDP 337 (1069)
Q Consensus 258 l~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~ 337 (1069)
+++..|+.+++++..++.+++++..+++.++.+|..|++++.++++ +.|.+.++.+++...+++.++..|.+..+|+
T Consensus 233 l~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e---~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ 309 (1075)
T KOG2171|consen 233 LLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSE---YAPAMCKKLALLGHTLVPVLLAMMTEEEDDD 309 (1075)
T ss_pred HHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHH---hhHHHhhhchhhhccHHHHHHHhcCCcccch
Confidence 9999999999999999999999999999999999999999999999 5888888888899999999999999998889
Q ss_pred ccccCCCCCccccCCcchhhHHHHHHHHHHHcCCccchHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHH
Q 001487 338 LWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLE 417 (1069)
Q Consensus 338 ~~~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~ 417 (1069)
+|...++.|||+ +.+++..|.+++++++..+|++.++|.+++++..+++|++|+.|+|++++|+.+++||++.+.+.++
T Consensus 310 ew~~~d~~ded~-~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~ 388 (1075)
T KOG2171|consen 310 EWSNEDDLDEDD-EETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLP 388 (1075)
T ss_pred hhcccccccccc-ccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 999877666554 5678889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccc
Q 001487 418 QVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEIL 497 (1069)
Q Consensus 418 ~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~ 497 (1069)
++++.++++|+|++|+||++|+.++|++++.+.+.+.+.+.+.+.|.|+..+.+..+++|+.+|+.++-++.+.+.++.+
T Consensus 389 ~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l 468 (1075)
T KOG2171|consen 389 KILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSIL 468 (1075)
T ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHH
Confidence 99999999999999999999999999999999999987788888889999999877899999999999999999999999
Q ss_pred cCchHHHHH-HHHHHhhcCChhHHHHHHHHHHHHHHhhHhhhHhhHhhhhHHHHHHHhhccCccccchhhHHHHHHHHHH
Q 001487 498 TPYLDGIVS-KLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVG 576 (1069)
Q Consensus 498 ~~~l~~i~~-~l~~~l~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~l~ 576 (1069)
.||++.+++ .+.-+.++.++.+++.++.+||+++.+.++.|.||++.+||.|.+.+++..+++.+.+|+++++|++.++
T Consensus 469 ~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~ 548 (1075)
T KOG2171|consen 469 EPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIA 548 (1075)
T ss_pred HHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHH
Confidence 999999999 5555667778999999999999999999999999999999999999999888889999999999999999
Q ss_pred HhhChhhhhhhHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHHHhcCCcccchhhhhHHHHHhcccCCCccccCCCC
Q 001487 577 MAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADS 656 (1069)
Q Consensus 577 ~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~ 656 (1069)
.++|+++|.|+..++++++..++.+..+.+++.+++.+.+|+++|+.+|++|.||++.++|.+++....+|+....|+++
T Consensus 549 ~AVGke~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~~warmc~ilg~~F~p~L~~Vmppl~~ta~~~p~~~~~d~~d 628 (1075)
T KOG2171|consen 549 RAVGKEKFLPLAEELIQLLLELQGSDQDDDDPLRSYMIAFWARMCRILGDDFAPFLPVVMPPLLKTARLDPDVALSDEED 628 (1075)
T ss_pred HHhhhhhhhHhHHHHHHHHHhhcccchhhccccHHHHHHHHHHHHHHhchhhHhHHHHHhHHHHHhhccCCcccCcCchh
Confidence 99999999999999999999987767778889999999999999999999999999999999999999988876653322
Q ss_pred ccccccCCCcccchhhcCCc-eeeeccchHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHhhccCCcCChHHHHHHHH
Q 001487 657 DNEIEDSDDDSMETITLGDK-RIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVS 735 (1069)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~k~~a~~~l~~l~~~~~~~~~p~~~~~~~~l~~~l~~~~~~~ir~~a~~ 735 (1069)
+.+..+.++|+++..+++ .++|+|+.+++|+.|+.+|+.++...+..|.||+.++++..++.+..++|..+|++|+.
T Consensus 629 --~e~~~~~~~~e~~~~~~~e~~~I~Tsvl~eK~~A~~~Lv~~a~~lk~~F~pYve~v~~l~v~~l~f~fhdgVR~aa~~ 706 (1075)
T KOG2171|consen 629 --EEEEQDLDGWEVVELGDKENIGIRTSVLDEKETACEALGEYAKELKEAFAPYVEQVVELMVPLLKFYFHDGVRKAAAE 706 (1075)
T ss_pred --hhhccccccchhhccCCceeeeeeehhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 222235567888888877 89999999999999999999999999999999999999977788888999999999999
Q ss_pred hHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHH
Q 001487 736 AMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGP-LLDEGQVRSIVDE 814 (1069)
Q Consensus 736 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~v~~~~l~~l~~~i~~~~~-~~~~~~~~~~~~~ 814 (1069)
+++.++++...+..+ .+.+++..+..+.+.++..+..+++++++.++++++++|++.+|+ +++++.+..+...
T Consensus 707 ~~p~ll~~~~~A~~~------~p~~l~~l~~~~~~~l~~~l~~E~e~~vl~~vl~~f~~~i~~~G~~~L~~~~~~~~~~~ 780 (1075)
T KOG2171|consen 707 SMPQLLTCALKACQG------GPEYLKQLWEAIRPALIKALEEEPETEVLSEILESFAECIEVMGDNCLNEDGLEALLGG 780 (1075)
T ss_pred HHHHHHHHHHHHhcc------ChHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHH
Confidence 999999988776643 345889999999999999999999999999999999999999997 4788888888888
Q ss_pred HHHHHHHHHhhHHHHHHHhcCCCCChHhhhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhchhhhHHHHHhhhhhhhcCCC
Q 001487 815 IKQVITASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDK 894 (1069)
Q Consensus 815 l~~~l~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~ 894 (1069)
+...+.....+...|..+...||+|.++.|.+. |.+..+.+.+.+.+..+++.+++.|.|+|..++|.+++++.++.
T Consensus 781 ~~~~~l~~~~~~~~r~~~~~eed~d~~eee~~~---e~d~~ll~~i~~i~~~l~k~~k~~f~p~f~~~~p~iv~~l~~~~ 857 (1075)
T KOG2171|consen 781 LLAQLLQHFKRMQDRQEEDDEEDDDIEEEEDLD---EQDAYLLDAISDILAALAKALKGSFLPFFENFLPLIVKLLKSKK 857 (1075)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHh---hhhHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHhcCC
Confidence 777777777666665544334444444444443 57788999999999999999999999999999999999997666
Q ss_pred CHHHHHHHHHHHHHHHhHhhhhhhhhhHhHHHHHHhhccCCChhHHHhhhHHHHHHHhhcCCCchHHHHHHHHHHHHhhc
Q 001487 895 TAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIR 974 (1069)
Q Consensus 895 ~~~~r~~a~~~l~~l~~~~~~~~~~~~~~l~~~ll~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~~l~~L~~~l~ 974 (1069)
... |+.|+++++++++.++++..+|...++|.++.++.|++++||++|+|++|.+++++++.+.|.....++.|..+++
T Consensus 858 ~~~-r~~av~~~~d~ie~~~~a~~~~~~~~~p~~~~~~~d~~pEVRqaAsYGiGvlaq~~g~~y~~v~~~~l~~L~~~iq 936 (1075)
T KOG2171|consen 858 TVA-RQWAVCIFDDLIEGCGEASAKYKERFLPLVLEALQDSDPEVRQAAAYGMGVLAQFGGEDYAPVCSEALPLLVQVLQ 936 (1075)
T ss_pred cHH-HHHHHHHHHHHHHhcccccchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHc
Confidence 555 9999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChhhhhhHHHHHHHHHHHHhhcCCCCCHhhHHHHHHhhCCCCCcHHHHHHHHHHHHHHHhhcCCcccCcCcCChh
Q 001487 975 HPNALQPENLMAYDNAVSALGKICQFHRDSIDAAQVVPAWLNCLPIKGDLIEAKIVHEQLCSMVERSDSDLLGPNHQYLP 1054 (1069)
Q Consensus 975 ~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~l~~lp~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 1054 (1069)
.+..+.+++..+++|+++|++|++.++|..+++++++|.||+.||.++|.+|....|.+|+.|++++||.++|++.+++|
T Consensus 937 ~~~ar~Ee~~~ateNa~gaiaki~~~~~~~i~vdqvl~~~l~~LPl~~D~eEa~~iy~~l~~L~e~n~p~v~~~~n~~ip 1016 (1075)
T KOG2171|consen 937 PPLARTEENRRATENAIGAIAKILLFNPNRIPVDQVLPAWLSWLPLKEDKEEAVPIYTFLSDLYESNHPIVLGPNNQNIP 1016 (1075)
T ss_pred ChhhhhHHHhHHHHHHHHHHHHHHHhCCccCcHHHHHHHHHHhCCCccchhhhhhHHHHHHHHHHhCCCeeeCCCcccch
Confidence 99988888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhh
Q 001487 1055 KIVSVFAEVSSC 1066 (1069)
Q Consensus 1055 ~i~~~~~~~~~~ 1066 (1069)
+|+.++.+.+..
T Consensus 1017 ~i~~v~~~~~~~ 1028 (1075)
T KOG2171|consen 1017 KILSVCAESLAD 1028 (1075)
T ss_pred HHHHHHHhhhhc
Confidence 999999998764
No 2
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.9e-70 Score=566.39 Aligned_cols=768 Identities=23% Similarity=0.340 Sum_probs=617.8
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc--CCCHHHHHHHHHHHHhhcccCCCCcccCCCHH
Q 001487 22 APFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR--SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLH 99 (1069)
Q Consensus 22 ~~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~~p~~~~~~L~~il~~--~~~~~~R~~a~i~L~~~i~~~~~~~w~~l~~~ 99 (1069)
+|+.++|++.+|||+++|+.+...|.++.. .|++ ..||+.+|.. +.+..+|..|+.+|||.++.+ |..++++
T Consensus 13 ~ql~~lLk~s~Spn~~~~~~~~~~leq~~~-~pdf-nnYL~~IL~~~~~~d~~~Rs~aGLlLKNnvr~~----~~~~~~~ 86 (885)
T KOG2023|consen 13 QQLAQLLKNSQSPNSETRNNVQEKLEQFNL-FPDF-NNYLIYILIRAKSEDVPTRSLAGLLLKNNVRGH----YNSIPSE 86 (885)
T ss_pred HHHHHHHHhccCCChHHHHHHHHHHHHHhc-ccch-hceeeEEEecccccchhHHHHhhhhHhcccccc----ccCCChH
Confidence 467778999999999999999999999999 7885 6999999986 677889999999999999998 9999999
Q ss_pred HHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCCChhHHHHHHHHHHHhhhhhhhhc-
Q 001487 100 TQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTL- 178 (1069)
Q Consensus 100 ~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~- 178 (1069)
.+.++|..+++.+.+ .++.+|...+.+|.+|++... ...||+++|.|.+++.+++.+..++|+.+|..+|+...+.+
T Consensus 87 ~~~yiKs~~l~~lgd-~~~lIr~tvGivITTI~s~~~-~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~ld 164 (885)
T KOG2023|consen 87 VLDYIKSECLHGLGD-ASPLIRATVGIVITTIASTGG-LQHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLD 164 (885)
T ss_pred HHHHHHHHHHhhccC-chHHHHhhhhheeeeeecccc-cccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHh
Confidence 999999999999998 688999999999999998643 37899999999999999999999999999999999876543
Q ss_pred ----chhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhCCcchHhHHHhhHHHHHHHHHHHHhCCChHHHHHHHHH
Q 001487 179 ----TPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALEL 254 (1069)
Q Consensus 179 ----~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~ 254 (1069)
..-++-++|.|++..+++ ++.+|..|+.|+..++... ...+...+..+++.++...++.++++|+..|..
T Consensus 165 s~~~~rpl~~mipkfl~f~~h~-spkiRs~A~~cvNq~i~~~-----~qal~~~iD~Fle~lFalanD~~~eVRk~vC~a 238 (885)
T KOG2023|consen 165 SDVLTRPLNIMIPKFLQFFKHP-SPKIRSHAVGCVNQFIIIQ-----TQALYVHIDKFLEILFALANDEDPEVRKNVCRA 238 (885)
T ss_pred hhcccCchHHhHHHHHHHHhCC-ChhHHHHHHhhhhheeecC-----cHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHH
Confidence 235788999999999998 9999999999999888653 345666778899999999999999999999999
Q ss_pred HHHHHccccHHHHHhHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCC
Q 001487 255 LIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIE 334 (1069)
Q Consensus 255 l~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~ 334 (1069)
|.-+.+..++.+.||+..+++++++... +.++++...|++||.++++. |--..-+.+|+.+++|.|+..|.+.+
T Consensus 239 lv~Llevr~dkl~phl~~IveyML~~tq--d~dE~VALEACEFwla~aeq----pi~~~~L~p~l~kliPvLl~~M~Ysd 312 (885)
T KOG2023|consen 239 LVFLLEVRPDKLVPHLDNIVEYMLQRTQ--DVDENVALEACEFWLALAEQ----PICKEVLQPYLDKLIPVLLSGMVYSD 312 (885)
T ss_pred HHHHHHhcHHhcccchHHHHHHHHHHcc--CcchhHHHHHHHHHHHHhcC----cCcHHHHHHHHHHHHHHHHccCcccc
Confidence 9999999999999999999999999764 45788999999999999993 32123467899999999999998754
Q ss_pred CCcc---------------------cc-------------cCCCCCc--ccc---CCcchhhHHHHHHHHHHHcCCccch
Q 001487 335 DDPL---------------------WH-------------SAETEDE--DAG---ESSNYSVGQECLDRLAIALGGNTIV 375 (1069)
Q Consensus 335 ~~~~---------------------~~-------------~~~~e~e--d~~---~~~~~~~a~~~l~~l~~~~~~~~~~ 375 (1069)
+|.. +. ++++||| |+| +|+.++.+..+|+.++..+| ++++
T Consensus 313 ~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~-~elL 391 (885)
T KOG2023|consen 313 DDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFG-DELL 391 (885)
T ss_pred ccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhH-HHHH
Confidence 3210 00 0001111 111 24556678889999999998 8999
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhHhhhchhHHh
Q 001487 376 PVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQN 455 (1069)
Q Consensus 376 ~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~ 455 (1069)
+.++|++.+.+.+++|++|++++.++|++++||.+.+.+|++.++|++++.|.|..|.||..+||+|++++.|.-..-..
T Consensus 392 ~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~ 471 (885)
T KOG2023|consen 392 PILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRD 471 (885)
T ss_pred HHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998655446
Q ss_pred hhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhH
Q 001487 456 QFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQ 535 (1069)
Q Consensus 456 ~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~i~~~l~~~l~~~~~~v~~~al~~l~~l~~~~~ 535 (1069)
.|+..++..+++.+-| ++.+||++||+++..+-+..+++ +.||+..|+..+..++.....+-..-.+.++|+++..+|
T Consensus 472 ~~f~pvL~~ll~~llD-~NK~VQEAAcsAfAtleE~A~~e-LVp~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg 549 (885)
T KOG2023|consen 472 EYFKPVLEGLLRRLLD-SNKKVQEAACSAFATLEEEAGEE-LVPYLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSVG 549 (885)
T ss_pred hhhHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHhccch-hHHHHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHH
Confidence 7899999999999999 89999999999999999998866 679999999999999987765555567899999999999
Q ss_pred hhhH--hhHhhhhHHHHHHHhhccC--ccccchhhHHHHHHHHHHHhhChhhhhhhHHHHHHHHHHHhcCCCCCCCchhh
Q 001487 536 EHFQ--KYYDAVMPFLKAILVNATD--KSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTS 611 (1069)
Q Consensus 536 ~~~~--~~~~~i~~~l~~~l~~~~~--~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~ 611 (1069)
..+. .|.+.++|.|.+.+..-.+ ++..++ ++|++.+++++| ..|.||++++.+-...+..
T Consensus 550 ~~Ln~~~YiqiLmPPLi~KW~~lsd~DKdLfPL----LEClSsia~AL~-~gF~P~~~~Vy~Rc~~il~----------- 613 (885)
T KOG2023|consen 550 HALNKPAYIQILMPPLIEKWELLSDSDKDLFPL----LECLSSIASALG-VGFLPYAQPVYQRCFRILQ----------- 613 (885)
T ss_pred HhcCcHHHHHHhccHHHHHHHhcCcccchHHHH----HHHHHHHHHHHh-ccccccCHHHHHHHHHHHH-----------
Confidence 8775 4899999999998876433 222333 556666655555 4455554443332111000
Q ss_pred HHHHHHHHHHHHhcCCcccchhhhhHHHHHhcccCCCccccCCCCccccccCCCcccchhhcCCceeeeccchHHHHHHH
Q 001487 612 YMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATA 691 (1069)
Q Consensus 612 ~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~a 691 (1069)
.++..+++ .+.++..
T Consensus 614 ---~t~q~~~~--------------------~~~~~~~------------------------------------------ 628 (885)
T KOG2023|consen 614 ---KTLQLLAK--------------------VQQDPTV------------------------------------------ 628 (885)
T ss_pred ---HHHHHHHh--------------------ccCCccc------------------------------------------
Confidence 00000000 0000000
Q ss_pred HHHHHHHHHHhhhcccccHHHHHHHHhhccCCcCChHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHH
Q 001487 692 CNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPA 771 (1069)
Q Consensus 692 ~~~l~~l~~~~~~~~~p~~~~~~~~l~~~l~~~~~~~ir~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 771 (1069)
T Consensus 629 -------------------------------------------------------------------------------- 628 (885)
T KOG2023|consen 629 -------------------------------------------------------------------------------- 628 (885)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHccCCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCCCChHhhhHhhhhhh
Q 001487 772 LVEALHKEPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIKEENE 851 (1069)
Q Consensus 772 l~~~~~~~~~~~v~~~~l~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~~ 851 (1069)
..++.+.
T Consensus 629 ------~~pdkdf------------------------------------------------------------------- 635 (885)
T KOG2023|consen 629 ------EAPDKDF------------------------------------------------------------------- 635 (885)
T ss_pred ------cCCCcce-------------------------------------------------------------------
Confidence 0000000
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhchhhhHHH--HHhhhhhhhcCCCCHHHHHHHHHHHHHHHhHhhhhhhhhhHhHHHHHH
Q 001487 852 QEEEVFDQVGEILGTLIKTFKAAFLPFFDE--LSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLL 929 (1069)
Q Consensus 852 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~--l~~~l~~~l~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~l~~~ll 929 (1069)
+-.+.++++.+++++|....+.+.+ +...+..++ .+..+++|++++.++|++.+.|.+++.|+...++|.+.
T Consensus 636 -----iI~sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~-~D~~peVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg 709 (885)
T KOG2023|consen 636 -----IIVSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCL-QDEVPEVRQSAFALLGDLTKACFEHVIPNLADFLPILG 709 (885)
T ss_pred -----EEEeHHHHhHHHHHhhhchHHHhhhccHHHHHHHHh-ccCChHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHh
Confidence 0011222223333333333222222 444444554 57889999999999999999999999999999999999
Q ss_pred hhccCCChhHHHhhhHHHHHHHhhcCCCchHHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHHHHHhhcCCCC--CH
Q 001487 930 EACNDENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQFHRDSI--DA 1007 (1069)
Q Consensus 930 ~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~--~~ 1007 (1069)
..+....-.+++||+|++|.++...+...++|+..++..|..++..++. ...+-+|.+.++||+...+|+.+ ++
T Consensus 710 ~Nl~~~~isv~nNA~WAiGeia~k~g~~~~~~v~~vl~~L~~iin~~~~----~~tllENtAITIGrLg~~~Pe~vAp~l 785 (885)
T KOG2023|consen 710 ANLNPENISVCNNAIWAIGEIALKMGLKMKQYVSPVLEDLITIINRQNT----PKTLLENTAITIGRLGYICPEEVAPHL 785 (885)
T ss_pred hcCChhhchHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHhcccCc----hHHHHHhhhhhhhhhhccCHHhcchhH
Confidence 8888888999999999999999999999999999999999999987754 46899999999999999999987 79
Q ss_pred hhHHHHHHhhCCCCCcHHHHHHHHHHHHHHHhhcCCcccCcCcCChhHHHHHH
Q 001487 1008 AQVVPAWLNCLPIKGDLIEAKIVHEQLCSMVERSDSDLLGPNHQYLPKIVSVF 1060 (1069)
Q Consensus 1008 ~~~~~~~l~~lp~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~i~~~~ 1060 (1069)
+.++..|+..+....|.+|++++|.++|.++..+|..+... ++-+..++
T Consensus 786 ~~f~~pWc~sl~~i~DneEK~sAFrG~c~mi~vNp~~vv~~----~~f~c~ai 834 (885)
T KOG2023|consen 786 DSFMRPWCTSLRNIDDNEEKESAFRGLCNMINVNPSGVVSS----FIFICDAI 834 (885)
T ss_pred HHHHHHHHHHhcccccchhHHHHHHHHHHheeeCchhhhhh----hHHHHHHH
Confidence 99999999999988999999999999999998887777665 44444443
No 3
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.8e-59 Score=490.48 Aligned_cols=763 Identities=20% Similarity=0.312 Sum_probs=610.8
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc-CCCHHHHHHHHHHHHhhcccCC-------CCccc
Q 001487 23 PFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDD-------SFLWP 94 (1069)
Q Consensus 23 ~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~~p~~~~~~L~~il~~-~~~~~~R~~a~i~L~~~i~~~~-------~~~w~ 94 (1069)
++.++|....|||.+.|+.|+++|+++.++|.+.|+..|.++|.+ ..+...|..|++.|||.+..++ ...|-
T Consensus 2 ~~~~~le~tlSpD~n~~~~Ae~~l~~~~~~nf~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~qRWl 81 (859)
T KOG1241|consen 2 ELLELLEKTLSPDQNVRKRAEKQLEQAQSQNFPQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERKQQYQQRWL 81 (859)
T ss_pred cHHHHHHHHcCCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHHHHHHHHHH
Confidence 466788889999999999999999999988888899999999997 6678899999999999998874 34599
Q ss_pred CCCHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCCChh-HHHHHHHHHHHhhhh
Q 001487 95 RLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVK-LQESAFLIFAQLSQY 173 (1069)
Q Consensus 95 ~l~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~~~~w~~ll~~l~~~~~~~~~~-~r~~al~~l~~l~~~ 173 (1069)
.++.+.++++|..+++.|.+ +.+.....++++++.||..++|.+.||++++.+.....++.+. ++++++.++|.+|++
T Consensus 82 ~l~~e~reqVK~~il~tL~~-~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~ 160 (859)
T KOG1241|consen 82 QLPAEIREQVKNNILRTLGS-PEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNVGEEQASMVKESSLEALGYICED 160 (859)
T ss_pred cCCHHHHHHHHHHHHHHcCC-CCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHcc
Confidence 99999999999999999997 6888999999999999999999999999999999999877664 999999999999999
Q ss_pred hhhh-cchhHHHHHHHHHHhhcCC-CChHHHHHHHHHHHHHHHhhCCcchHhHHHhhHHHHHHHHHHHHhCCChHHHHHH
Q 001487 174 IGDT-LTPHLKHLHAVFLNCLTNS-NNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEA 251 (1069)
Q Consensus 174 ~~~~-~~~~~~~l~~~l~~~l~~~-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ 251 (1069)
..+. +....+.++..+..++... ++..||.+|+++|....++...++..+.-. ..++++.++..+++|.+++.++
T Consensus 161 i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~er---n~iMqvvcEatq~~d~~i~~aa 237 (859)
T KOG1241|consen 161 IDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMER---NYIMQVVCEATQSPDEEIQVAA 237 (859)
T ss_pred CCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhh---ceeeeeeeecccCCcHHHHHHH
Confidence 6554 5567888888888887764 478999999999999888754332222222 2678899999999999999999
Q ss_pred HHHHHHHHccccHHHHHhHHH-HHHHHHHHhcCCCcchHHHHHHHHHHHHHHHhh-----hccchhhhcc--------hh
Q 001487 252 LELLIELAGTEPRFLRRQLVD-VVGSMLQIAEAESLEEGTRHLAIEFVITLAEAR-----ERAPGMMRKL--------PQ 317 (1069)
Q Consensus 252 ~~~l~~l~~~~~~~~~~~~~~-l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~-----~~~~~~~~~~--------~~ 317 (1069)
+.||.++...+++++.+|+.+ ++...+..+. +.++++..++++||+++++.+ ++.....+.. ..
T Consensus 238 ~~ClvkIm~LyY~~m~~yM~~alfaitl~amk--s~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~ 315 (859)
T KOG1241|consen 238 FQCLVKIMSLYYEFMEPYMEQALFAITLAAMK--SDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQ 315 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHH
Confidence 999999999999999999986 8887777664 568999999999999999852 1111111111 12
Q ss_pred hHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCcchhhHHHHHHHHHHHcCCccchHHHHHHHHHhhcCCChHHHHHH
Q 001487 318 FINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAA 397 (1069)
Q Consensus 318 ~~~~l~~~l~~~l~~~~~~~~~~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aa 397 (1069)
-++.++|.|++.|.+.++ ++|+|+|++.++|..||..++...| +.++|+++|++.+.+++++|+.|++|
T Consensus 316 a~~~v~P~Ll~~L~kqde----------~~d~DdWnp~kAAg~CL~l~A~~~~-D~Iv~~Vl~Fiee~i~~pdwr~reaa 384 (859)
T KOG1241|consen 316 ALQDVVPVLLELLTKQDE----------DDDDDDWNPAKAAGVCLMLFAQCVG-DDIVPHVLPFIEENIQNPDWRNREAA 384 (859)
T ss_pred HHhHhhHHHHHHHHhCCC----------CcccccCcHHHHHHHHHHHHHHHhc-ccchhhhHHHHHHhcCCcchhhhhHH
Confidence 345689999988876543 3345579999999999999999998 89999999999999999999999999
Q ss_pred HHHHHHHHhhcH-HHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhHhhhchhH-HhhhhhhhHHHHHhhccCCCCh
Q 001487 398 LIALAQIAEGCA-KVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDL-QNQFHPQVLPALAGAMDDFQNP 475 (1069)
Q Consensus 398 l~~l~~l~~~~~-~~~~~~~~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~-~~~~~~~il~~l~~~l~~~~~~ 475 (1069)
.+++|++.++.. +...+...+.+|.++..+.|++-.||.++.|++|++++.++..+ ...+...+++.++..|+| .|
T Consensus 385 vmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D--eP 462 (859)
T KOG1241|consen 385 VMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND--EP 462 (859)
T ss_pred HHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh--Cc
Confidence 999999998855 46677888899999999999999999999999999999886543 235788999999999998 89
Q ss_pred hHHHHHHHHHHHhhhcCC--------cccccCchHHHHHHHHHHhhcC---ChhHHHHHHHHHHHHHHhhHhhhHhhHhh
Q 001487 476 RVQAHAASAVLNFSENCT--------PEILTPYLDGIVSKLLVLLQNG---KQMVQEGALTALASVADSSQEHFQKYYDA 544 (1069)
Q Consensus 476 ~v~~~a~~al~~l~~~~~--------~~~~~~~l~~i~~~l~~~l~~~---~~~v~~~al~~l~~l~~~~~~~~~~~~~~ 544 (1069)
+|..++||++..+++.+. .+...|+++.|+..|++..+.. ....|..++++|+.+++...+...|....
T Consensus 463 rva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~ 542 (859)
T KOG1241|consen 463 RVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQK 542 (859)
T ss_pred hHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 999999999999986531 1234579999999999987763 46899999999999999998887665555
Q ss_pred hhHHHHHHHhh---------ccCccccchhhHHHHHHHHHHHhhChhhhhhhHHHHHHHHHHHhcCCCCCCCchhhHHHH
Q 001487 545 VMPFLKAILVN---------ATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQ 615 (1069)
Q Consensus 545 i~~~l~~~l~~---------~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~ 615 (1069)
+...+...+.+ .+......+..-...+++.+.+.+|+ .+.++.+.+|.+++++.++ .....+.+.++.
T Consensus 543 ~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~-~~~~~~d~iM~lflri~~s--~~s~~v~e~a~l 619 (859)
T KOG1241|consen 543 LTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGS-DIREVSDQIMGLFLRIFES--KRSAVVHEEAFL 619 (859)
T ss_pred HHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccc-cchhHHHHHHHHHHHHHcC--CccccchHHHHH
Confidence 54444443322 11123345666677789999999994 8999999999999997765 223457788888
Q ss_pred HHHHHHHHhcCCcccchhhhhHHHHHhcccCCCccccCCCCccccccCCCcccchhhcCCceeeeccchHHHHHHHHHHH
Q 001487 616 AWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNML 695 (1069)
Q Consensus 616 ~~~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~a~~~l 695 (1069)
+.+.++..+|+.|..|++.+.|+|...++.-.+ -+.=..|....
T Consensus 620 aV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e------------------------------------~qVc~~aVglV 663 (859)
T KOG1241|consen 620 AVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQE------------------------------------YQVCAAAVGLV 663 (859)
T ss_pred HHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchH------------------------------------HHHHHHHHHHH
Confidence 999999999999999999999999999943110 01124678889
Q ss_pred HHHHHHhhhcccccHHHHHHHHhhccCCc-CChHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHH
Q 001487 696 CCYADELKEGFFPWIDQVAPTLVPLLKFY-FHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVE 774 (1069)
Q Consensus 696 ~~l~~~~~~~~~p~~~~~~~~l~~~l~~~-~~~~ir~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~ 774 (1069)
|.++..++..|.||...++..++..++.+ .+.+++-...+++|.+...+.. .+.+|++.+++.+.+
T Consensus 664 gdl~raL~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~-------------~F~~Yl~~vm~llq~ 730 (859)
T KOG1241|consen 664 GDLARALEDDILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGA-------------DFEPYLEMVMPLLQQ 730 (859)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHccCccccccccchHHHHHHHHHHHHHH-------------hHHHHHHHHHHHHHH
Confidence 99999999999999999999999999764 3667888889999998776532 367889999986665
Q ss_pred HHc--cCC----c----HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCCCChHhhh
Q 001487 775 ALH--KEP----D----TEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESE 844 (1069)
Q Consensus 775 ~~~--~~~----~----~~v~~~~l~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~e~~d~~~~~ 844 (1069)
.-. .++ . .+++..++++...++..++.......+.++++.+++++.+... +++
T Consensus 731 as~~~~d~~~~~~~dYvd~LRe~~leay~gi~qglk~~~~~~~~~p~v~~I~sfi~~I~~----------e~~------- 793 (859)
T KOG1241|consen 731 ASSVQTDPADDSMVDYVDELREGILEAYTGIIQGLKTHADVMLVQPYVPHIISFIDRIAA----------EPD------- 793 (859)
T ss_pred HHhccCCCCcccHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhcchHHHHHHHHHHhc----------Ccc-------
Confidence 542 221 1 1345556666666777776444556677888888888776421 111
Q ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHhhhchhhhHH
Q 001487 845 LIKEENEQEEEVFDQVGEILGTLIKTFKAAFLPFFD 880 (1069)
Q Consensus 845 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 880 (1069)
.++.+...+..+||.|+..+|.+..+++.
T Consensus 794 -------~~~~~~~~a~GlIgDL~~~fg~~~~~~~~ 822 (859)
T KOG1241|consen 794 -------VSEALHAAALGLIGDLATMFGKGVIKLFL 822 (859)
T ss_pred -------cchHHHHHHHHHHHHHHHHcccchhhhhc
Confidence 23466778899999999999988766544
No 4
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=100.00 E-value=4.7e-46 Score=379.73 Aligned_cols=684 Identities=16% Similarity=0.203 Sum_probs=530.5
Q ss_pred ChHHHHHHHHH-hcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc-CCCHHHHHHHHHHHHhhcccCC-------C
Q 001487 20 DSAPFETLISH-LMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDD-------S 90 (1069)
Q Consensus 20 ~~~~l~~ll~~-~~s~d~~~r~~A~~~L~~~~~~~p~~~~~~L~~il~~-~~~~~~R~~a~i~L~~~i~~~~-------~ 90 (1069)
.-.++.++.++ +++||++.|..||.+|.++...+...|+..+.+.+.+ +++++.|..|++.|||.+..++ .
T Consensus 2 ~~~ef~~l~~n~vLspD~n~rl~aE~ql~~l~~~dF~qf~~ll~qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~~~~ 81 (858)
T COG5215 2 KKSEFRCLGKNHVLSPDPNARLRAEAQLLELQSGDFEQFISLLVQVLCDLNSNDQLRMVAGLILKNSLHANDPELQKGCS 81 (858)
T ss_pred chHHHHHHHhcccCCCCCCccccHHHHHHHhccccHHHHHHHHHHHHhccCCcHHHHHHHHHHHhhhhhcCCHHHHHHHH
Confidence 34456666665 7899999999999999999987778899999999997 8889999999999999998764 4
Q ss_pred CcccCCCHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCCCh-hHHHHHHHHHHH
Q 001487 91 FLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSV-KLQESAFLIFAQ 169 (1069)
Q Consensus 91 ~~w~~l~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~~~~w~~ll~~l~~~~~~~~~-~~r~~al~~l~~ 169 (1069)
..|-.+++|.|+++|...++.|.+ +.+.....+++.++.|++.++|++.||+++..+........+ ..+..++.+++.
T Consensus 82 qrW~~~~~E~k~qvK~~al~aL~s-~epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy 160 (858)
T COG5215 82 QRWLGMRHESKEQVKGMALRALKS-PEPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGY 160 (858)
T ss_pred HhhccCCHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhccccCchHhHHHHHHHHHH
Confidence 569999999999999999999998 789999999999999999999999999999999999887665 577889999999
Q ss_pred hhhhhhh-hcchhHHHHHHHH-HHhhcCCCChHHHHHHHHHHHHHHHhhCCcchHhHHHhhHHHHHHHHHHHHhCCChHH
Q 001487 170 LSQYIGD-TLTPHLKHLHAVF-LNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEAT 247 (1069)
Q Consensus 170 l~~~~~~-~~~~~~~~l~~~l-~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~ 247 (1069)
+|+...+ .+....+.++-.+ ...++.+.+..||..|+++|..-..........+ .-...++++.++..+.++.++
T Consensus 161 ~ces~~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E---~erNy~mqvvceatq~~d~e~ 237 (858)
T COG5215 161 HCESEAPEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYE---EERNYFMQVVCEATQGNDEEL 237 (858)
T ss_pred HhhccCHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcch---hhhchhheeeehhccCCcHHH
Confidence 9998655 4555555555444 4455555688999999999998555443322222 223378889999999999999
Q ss_pred HHHHHHHHHHHHccccHHHHHhHHH-HHHHHHHHhcCCCcchHHHHHHHHHHHHHHHhh-------hccchhhhcch---
Q 001487 248 AQEALELLIELAGTEPRFLRRQLVD-VVGSMLQIAEAESLEEGTRHLAIEFVITLAEAR-------ERAPGMMRKLP--- 316 (1069)
Q Consensus 248 ~~~~~~~l~~l~~~~~~~~~~~~~~-l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~-------~~~~~~~~~~~--- 316 (1069)
..+++.||.++...+++++.+|+.. +..++.+.+ +..++++..++.++|+++++.+ ++.|..-....
T Consensus 238 q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~m--ks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa 315 (858)
T COG5215 238 QHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFM--KSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFA 315 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchH
Confidence 9999999999999999999999875 444445545 4568999999999999999853 11121100111
Q ss_pred -hhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCcchhhHHHHHHHHHHHcCCccchHHHHHHHHHhhcCCChHHHH
Q 001487 317 -QFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHH 395 (1069)
Q Consensus 317 -~~~~~l~~~l~~~l~~~~~~~~~~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~ 395 (1069)
..+..++|.++.+|....+ |.++|+|++..+|..||..++...| +.+...++.++.+.+.+++|..|+
T Consensus 316 ~aav~dvlP~lL~LL~~q~e----------d~~~DdWn~smaA~sCLqlfaq~~g-d~i~~pVl~FvEqni~~~~w~nre 384 (858)
T COG5215 316 RAAVADVLPELLSLLEKQGE----------DYYGDDWNPSMAASSCLQLFAQLKG-DKIMRPVLGFVEQNIRSESWANRE 384 (858)
T ss_pred HHHHHHHHHHHHHHHHhcCC----------CccccccchhhhHHHHHHHHHHHhh-hHhHHHHHHHHHHhccCchhhhHH
Confidence 2345689999998876543 2334578889999999999999998 778888999999999999999999
Q ss_pred HHHHHHHHHHhhcH-HHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhHhhhchhHH-hhhhhhhHHHHHhhccCCC
Q 001487 396 AALIALAQIAEGCA-KVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQ-NQFHPQVLPALAGAMDDFQ 473 (1069)
Q Consensus 396 aal~~l~~l~~~~~-~~~~~~~~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~-~~~~~~il~~l~~~l~~~~ 473 (1069)
+|.+++|++.++.. ....++.++.+|.+.....|+.-.|+..++||+++++.+....+. ..|+.......+-++.|
T Consensus 385 aavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D-- 462 (858)
T COG5215 385 AAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLMD-- 462 (858)
T ss_pred HHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhhc--
Confidence 99999999998755 456678899999999999999999999999999999988765542 13567777777778888
Q ss_pred ChhHHHHHHHHHHHhhhcCCc------ccccCchHHHHHHHHHHhh--cCChhHHHHHHHHHHHHHHhhHhhhHhhHhhh
Q 001487 474 NPRVQAHAASAVLNFSENCTP------EILTPYLDGIVSKLLVLLQ--NGKQMVQEGALTALASVADSSQEHFQKYYDAV 545 (1069)
Q Consensus 474 ~~~v~~~a~~al~~l~~~~~~------~~~~~~l~~i~~~l~~~l~--~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~i 545 (1069)
+|.+..+++|...++++++.+ +.+.++++.|+..|++..+ ......|..+++++|.++..+++...+.+..+
T Consensus 463 ~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~ 542 (858)
T COG5215 463 CPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILAGF 542 (858)
T ss_pred cchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHH
Confidence 788889999999999887643 4566788888888887654 34567899999999999988876655444333
Q ss_pred hHHHHHHHhh-----------ccCccccchhhHHHHHHHHHHHhhChhhhhhhHHHHHHHHHHHhcCCCCCCCchhhHHH
Q 001487 546 MPFLKAILVN-----------ATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYML 614 (1069)
Q Consensus 546 ~~~l~~~l~~-----------~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~ 614 (1069)
..+....+.. .+.-...++.+..+..+..+.+..+ ..+.+-.++++++++++..+. ....+.+-++
T Consensus 543 ~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~-~~ie~v~D~lm~Lf~r~les~--~~t~~~~dV~ 619 (858)
T COG5215 543 YDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRR-RDIEDVEDQLMELFIRILEST--KPTTAFGDVY 619 (858)
T ss_pred HHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcC-CCcccHHHHHHHHHHHHHhcc--CCchhhhHHH
Confidence 3333332222 1111233455556666666766666 446677788999999855432 2234667778
Q ss_pred HHHHHHHHHhcCCcccchhhhhHHHHHhcccCCCccccCCCCccccccCCCcccchhhcCCceeeeccchHHHHHHHHHH
Q 001487 615 QAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNM 694 (1069)
Q Consensus 615 ~~~~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~a~~~ 694 (1069)
.+++.++..+++.|..|++.++|.+.+.++.... ..-..|+..
T Consensus 620 ~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~~d~-------------------------------------~v~~~avgl 662 (858)
T COG5215 620 TAISALSTSLEERFEQYASKFIPYLTRALNCTDR-------------------------------------FVLNSAVGL 662 (858)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHhcchhH-------------------------------------HHHHHHHHH
Confidence 8899999999999999999999999999842100 112457888
Q ss_pred HHHHHHHhhhcccccHHHHHHHHhhccCCc-CChHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHH
Q 001487 695 LCCYADELKEGFFPWIDQVAPTLVPLLKFY-FHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALV 773 (1069)
Q Consensus 695 l~~l~~~~~~~~~p~~~~~~~~l~~~l~~~-~~~~ir~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~ 773 (1069)
+|.++..++..|.+|...++..+..+++.+ .+.+++-+..+.++.+...... .+..|.+.|+-.+.
T Consensus 663 vgdlantl~~df~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga-------------~F~~YL~~im~L~q 729 (858)
T COG5215 663 VGDLANTLGTDFNIYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALAIGA-------------NFESYLDMIMMLFQ 729 (858)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHhcChhhccccchHHHHHHHHHHHHHhh-------------hHHHHHHHHHHHHH
Confidence 999999999999999999999999998754 3567888888999988776532 36678888776444
Q ss_pred HH
Q 001487 774 EA 775 (1069)
Q Consensus 774 ~~ 775 (1069)
+.
T Consensus 730 qa 731 (858)
T COG5215 730 QA 731 (858)
T ss_pred HH
Confidence 43
No 5
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=100.00 E-value=9.1e-38 Score=337.25 Aligned_cols=948 Identities=15% Similarity=0.211 Sum_probs=642.8
Q ss_pred HHHHHhcCCChHHHHHHHHHHH-Hhhhc----Cch---HHHHHHHHHHccCCCHHHHHHHHHHHHhhcccCCCCcccCCC
Q 001487 26 TLISHLMSTSNEQRSEAELLFN-LCKQQ----DPD---SLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLS 97 (1069)
Q Consensus 26 ~ll~~~~s~d~~~r~~A~~~L~-~~~~~----~p~---~~~~~L~~il~~~~~~~~R~~a~i~L~~~i~~~~~~~w~~l~ 97 (1069)
++++.+.|+|.+.|-.|+..|. ++++. +-+ ..+..+++.|. +.+.+++++|..++.-++++ +.
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~-D~ngEVQnlAVKClg~lvsK--------vk 79 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLE-DKNGEVQNLAVKCLGPLVSK--------VK 79 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHh-ccCcHHHHHHHHHHHHHHhh--------ch
Confidence 8899999999999999999875 45542 111 13456667665 57899999999999988755 55
Q ss_pred HHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCC-------CCchhhHHHHHHhhcC--CChhHHHHHHHHHH
Q 001487 98 LHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPE-------NGWPELLPFMFQCVSS--DSVKLQESAFLIFA 168 (1069)
Q Consensus 98 ~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~~-------~~w~~ll~~l~~~~~~--~~~~~r~~al~~l~ 168 (1069)
++..+.+.+.|...+.+ .....|...+-.+-.+....-|. .-.+.+.|.+.+.+.. +...++..++++++
T Consensus 80 e~~le~~ve~L~~~~~s-~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~ 158 (1233)
T KOG1824|consen 80 EDQLETIVENLCSNMLS-GKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILA 158 (1233)
T ss_pred HHHHHHHHHHHhhhhcc-chhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHH
Confidence 67778888888888776 35555655555555555433331 2345566666665543 33457888899999
Q ss_pred HhhhhhhhhcchhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhCCcchHhHHHhhHHHHHHHHHHHHhCCChHHH
Q 001487 169 QLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATA 248 (1069)
Q Consensus 169 ~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~ 248 (1069)
.+...++.-+.++...++..+.-.+..+ ...||+.|+.+++.++... ....|..++..+++.|.. .......
T Consensus 159 d~lsr~g~ll~~fh~~il~~l~~ql~s~-R~aVrKkai~~l~~la~~~----~~~ly~~li~~Ll~~L~~---~~q~~~~ 230 (1233)
T KOG1824|consen 159 DVLSRFGTLLPNFHLSILKCLLPQLQSP-RLAVRKKAITALGHLASSC----NRDLYVELIEHLLKGLSN---RTQMSAT 230 (1233)
T ss_pred HHHHhhcccCcchHHHHHHHHhhcccCh-HHHHHHHHHHHHHHHHHhc----CHHHHHHHHHHHHhccCC---CCchHHH
Confidence 8888888877777788888888888887 8999999999999999987 345666665555554443 3455667
Q ss_pred HHHHHHHHHHHccccHHHHHhHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHH
Q 001487 249 QEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEA-ESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILM 327 (1069)
Q Consensus 249 ~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~ 327 (1069)
...++|++++++..+..++.|+..+++++.+.++. .+.+++.|+.+++.+..+.. +.| +.+.++.+.++..++
T Consensus 231 rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~---rcp---~ei~p~~pei~~l~l 304 (1233)
T KOG1824|consen 231 RTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLR---RCP---KEILPHVPEIINLCL 304 (1233)
T ss_pred HHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHH---hCh---hhhcccchHHHHHHH
Confidence 78899999999999999999999999999988732 34578899999999999988 566 356788999999999
Q ss_pred HhhcCCC-------CCcc--cccCCCCCc-----cccCCcch---hhHHHHHHHHHHHcCCccchHH----HHHHHHHhh
Q 001487 328 SMLLDIE-------DDPL--WHSAETEDE-----DAGESSNY---SVGQECLDRLAIALGGNTIVPV----ASEQLPAYL 386 (1069)
Q Consensus 328 ~~l~~~~-------~~~~--~~~~~~e~e-----d~~~~~~~---~~a~~~l~~l~~~~~~~~~~~~----l~~~l~~~l 386 (1069)
.++.++. +|++ ...+++++| .||++..| ++|.+|+..+..... +++|. +-|.+...+
T Consensus 305 ~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~--E~L~~~~q~l~p~lI~Rf 382 (1233)
T KOG1824|consen 305 SYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRL--EMLPDFYQTLGPALISRF 382 (1233)
T ss_pred HHhccCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhccH--HHHHHHHHHhCHHHHHHH
Confidence 9988642 1111 111111111 12333344 568888877764432 33333 333344444
Q ss_pred cCCChHHHHHHHHHHHHHHhh------------------cH---HHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHh
Q 001487 387 AAPEWQKHHAALIALAQIAEG------------------CA---KVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQL 445 (1069)
Q Consensus 387 ~~~~~~~r~aal~~l~~l~~~------------------~~---~~~~~~~~~i~~~l~~~l~d~~~~vr~~a~~~l~~l 445 (1069)
+.....+|.-.+.++-.+... .+ ..+....+.++..+-+.+++.+-+.|..++..|..+
T Consensus 383 kEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~el 462 (1233)
T KOG1824|consen 383 KEREENVKADVFHAYIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTEL 462 (1233)
T ss_pred HHHhhhHHHHHHHHHHHHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHH
Confidence 555555555555554443321 11 233445566778888888888888899999999999
Q ss_pred HhhhchhHHhhhhhhhHHHHHhhccCCC-ChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHH
Q 001487 446 STDLGPDLQNQFHPQVLPALAGAMDDFQ-NPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGAL 524 (1069)
Q Consensus 446 ~~~~~~~~~~~~~~~il~~l~~~l~~~~-~~~v~~~a~~al~~l~~~~~~~~~~~~l~~i~~~l~~~l~~~~~~v~~~al 524 (1069)
....++.. .++.+.++|.+...|+|.+ ....+..+...+......++++.+.||++.+.+.+..++.++...+-..|+
T Consensus 463 i~~lp~~l-~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL 541 (1233)
T KOG1824|consen 463 INVLPGAL-AQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFYKISAEAL 541 (1233)
T ss_pred HHhCcchh-hhcccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchHhhhHHHH
Confidence 98887766 7999999999999999842 235667788888888888888889999999999999999999999999999
Q ss_pred HHHHHHHHhhHh-------hhHhhHhhhhHHHHHHHhhccCccccchhhHHHHHHHHHHHhhChhhhhhhHHHHHHHHHH
Q 001487 525 TALASVADSSQE-------HFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMS 597 (1069)
Q Consensus 525 ~~l~~l~~~~~~-------~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~ 597 (1069)
.+.+.+++...+ ++.||+.+++....+.++.. +.++++|.+|+.|+|.+...+| +....+++.+++.+.+
T Consensus 542 ~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~--d~DqeVkeraIscmgq~i~~fg-D~l~~eL~~~L~il~e 618 (1233)
T KOG1824|consen 542 LVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKAT--DSDQEVKERAISCMGQIIANFG-DFLGNELPRTLPILLE 618 (1233)
T ss_pred HHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhcc--cccHHHHHHHHHHHHHHHHHHh-hhhhhhhHHHHHHHHH
Confidence 999999987643 45689999999888888764 3467899999999999999999 7788889999999887
Q ss_pred -HhcCCCCCCCchhhHHHHHHHHHHHH-hcCCcccchhhhhHHHHHhcccCCCccccCCCCccccccCCCcccchh-h-c
Q 001487 598 -LQGSQMETDDPTTSYMLQAWARLCKC-LGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETI-T-L 673 (1069)
Q Consensus 598 -l~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~ 673 (1069)
+.+ +..|..+..++..++.. +.-+..|.+..+++.+...+.......-. . .-.-++.+ . .
T Consensus 619 Rl~n------EiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~r~lr~-~---------~l~a~~~L~~~~ 682 (1233)
T KOG1824|consen 619 RLGN------EITRLTAVKALTLIAMSPLDIDLSPVLTEILPELASFLRKNQRALRL-A---------TLTALDKLVKNY 682 (1233)
T ss_pred HHhc------hhHHHHHHHHHHHHHhccceeehhhhHHHHHHHHHHHHHHHHHHHHH-H---------HHHHHHHHHHHH
Confidence 443 44577888888877765 33345677888888777666321100000 0 00000000 0 0
Q ss_pred CCc-eeeeccchH------------HHHHHHHHHHHHHHHHhhhcccccHHHHHHHHhhccCCcC---------------
Q 001487 674 GDK-RIGIKTSVL------------EEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYF--------------- 725 (1069)
Q Consensus 674 ~~~-~~~v~~~~~------------~~k~~a~~~l~~l~~~~~~~~~p~~~~~~~~l~~~l~~~~--------------- 725 (1069)
++. .....+..+ ..-+.|+.++..++...+..+.-..+.+++.++.++..+.
T Consensus 683 ~~~~~~~~~e~vL~el~~Lisesdlhvt~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll~Spllqg~al~~~l~~f~a 762 (1233)
T KOG1824|consen 683 SDSIPAELLEAVLVELPPLISESDLHVTQLAVAFLTTLAIIQPSSLLKISNPILDEIIRLLRSPLLQGGALSALLLFFQA 762 (1233)
T ss_pred hccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcccHHHHHHhhhhHHHHHHHhhCccccchHHHHHHHHHHH
Confidence 000 000001111 1234567777777666555444444555555554443200
Q ss_pred --------------------------ChHHHHHHHHhHHHHHHHHHHH---------------HH---------------
Q 001487 726 --------------------------HEEVRKAAVSAMPELLRSAKLA---------------IE--------------- 749 (1069)
Q Consensus 726 --------------------------~~~ir~~a~~~l~~l~~~~~~~---------------~~--------------- 749 (1069)
...+.+.|..++...+.....+ +.
T Consensus 763 lV~t~~~~l~y~~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt~~~~~~s~s~a~kl~~~~~s~~s~~~ikvfa~Ls 842 (1233)
T KOG1824|consen 763 LVITKEPDLDYISLLSLLTAPVYEQVTDGLHKQAYYSIAKCVAALTCACPQKSKSLATKLIQDLQSPKSSDSIKVFALLS 842 (1233)
T ss_pred HHhcCCCCccHHHHHHHHcCCcccccccchhHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHhCCCCchhHHHHHHhh
Confidence 0011122222121111110000 00
Q ss_pred ---cCCCC----------------CCCHHHHHH------------HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHH
Q 001487 750 ---KGLAP----------------GRNESYVKQ------------LSDFIIPALVEALHKEPDTEICASMLDSLNECIQI 798 (1069)
Q Consensus 750 ---~~~~~----------------~~~~~~~~~------------~~~~i~~~l~~~~~~~~~~~v~~~~l~~l~~~i~~ 798 (1069)
-|... +...+.++. -.+..+|.++..+..++..+.. .+.++.+++..
T Consensus 843 lGElgr~~~~s~~~e~~~~iieaf~sp~edvksAAs~ALGsl~vgnl~~yLpfil~qi~sqpk~QyL--LLhSlkevi~~ 920 (1233)
T KOG1824|consen 843 LGELGRRKDLSPQNELKDTIIEAFNSPSEDVKSAASYALGSLAVGNLPKYLPFILEQIESQPKRQYL--LLHSLKEVIVS 920 (1233)
T ss_pred hhhhccCCCCCcchhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCchHhHHHHHHHHHhcchHhHHH--HHHHHHHHHHH
Confidence 01000 000000100 0122334444444444333332 55666666655
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCCCChHhhhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhchhhh
Q 001487 799 SGPLLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVFDQVGEILGTLIKTFKAAFLPF 878 (1069)
Q Consensus 799 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 878 (1069)
... +...+..+.+|.+|.+..++ .++..|..+++|+|.++-.-|+...|-
T Consensus 921 ~sv----d~~~~~v~~IW~lL~k~cE~--------------------------~eegtR~vvAECLGkL~l~epesLlpk 970 (1233)
T KOG1824|consen 921 ASV----DGLKPYVEKIWALLFKHCEC--------------------------AEEGTRNVVAECLGKLVLIEPESLLPK 970 (1233)
T ss_pred hcc----chhhhhHHHHHHHHHHhccc--------------------------chhhhHHHHHHHhhhHHhCChHHHHHH
Confidence 432 24455666666666653311 234558889999999998888776655
Q ss_pred HHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHHhHhhhhhhhhhHhHHHHHHhhccCCChhHHHhhhHHHHHHHhhcCCCc
Q 001487 879 FDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVV 958 (1069)
Q Consensus 879 ~~~l~~~l~~~l~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~l~~~ll~~l~~~~~~vr~~a~~~lg~l~~~~~~~~ 958 (1069)
+.. .+ .+..+..|..+++++...+..-++.+.+++.+.+..++..++|+|..||+.|...+...+.+.|..+
T Consensus 971 L~~-------~~-~S~a~~~rs~vvsavKfsisd~p~~id~~lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKpslI 1042 (1233)
T KOG1824|consen 971 LKL-------LL-RSEASNTRSSVVSAVKFSISDQPQPIDPLLKQQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKPSLI 1042 (1233)
T ss_pred HHH-------Hh-cCCCcchhhhhhheeeeeecCCCCccCHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHccCHhHH
Confidence 443 33 4566778999999999988888888888999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhcCC------------CCCChhhhhhHHHHHHHHHHHHhhcCCCCCHhhHHHHHHhhCCCCCcHHH
Q 001487 959 KPLVGEALSRLNVVIRHP------------NALQPENLMAYDNAVSALGKICQFHRDSIDAAQVVPAWLNCLPIKGDLIE 1026 (1069)
Q Consensus 959 ~~~~~~~l~~L~~~l~~~------------~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~l~~lp~~~d~~~ 1026 (1069)
+..++++||.|+.--... ++..|+..+.|..|.+|+..++..+-+.+++.+|+...-.+|... ..-
T Consensus 1043 rDllpeLLp~Ly~eTkvrkelIreVeMGPFKH~VDdgLd~RKaaFEcmytLLdscld~~dit~Fl~~~~~GL~Dh--ydi 1120 (1233)
T KOG1824|consen 1043 RDLLPELLPLLYSETKVRKELIREVEMGPFKHTVDDGLDLRKAAFECMYTLLDSCLDRLDITEFLNHVEDGLEDH--YDI 1120 (1233)
T ss_pred HHHHHHHHHHHHHhhhhhHhhhhhhcccCccccccchHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHhhcchh--hHH
Confidence 999999999998743221 334578899999999999999999888889999998777777532 334
Q ss_pred HHHHHHHHHHHHhhcCCcccCcCcCChhHHHHHHHHHhh
Q 001487 1027 AKIVHEQLCSMVERSDSDLLGPNHQYLPKIVSVFAEVSS 1065 (1069)
Q Consensus 1027 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 1065 (1069)
+.-.|..+.++....|..+..- +++++.-+..+.+
T Consensus 1121 Kmlt~l~l~rLa~lcPs~Vlqr----lD~l~EpLr~t~~ 1155 (1233)
T KOG1824|consen 1121 KMLTFLMLARLADLCPSAVLQR----LDRLVEPLRKTCT 1155 (1233)
T ss_pred HHHHHHHHHHHHhhCcHHHHHH----HHHHHHHHHHHhh
Confidence 5567888888888888888877 8888877766543
No 6
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-36 Score=340.72 Aligned_cols=832 Identities=17% Similarity=0.220 Sum_probs=575.6
Q ss_pred HHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhc-CCChhHHHHHHHHHHHhhhhhhhhcc-hhHHH
Q 001487 107 MLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVS-SDSVKLQESAFLIFAQLSQYIGDTLT-PHLKH 184 (1069)
Q Consensus 107 ~ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~~~~w~~ll~~l~~~~~-~~~~~~r~~al~~l~~l~~~~~~~~~-~~~~~ 184 (1069)
.|++.+.+ ++..+|+.+-+.+..+.+. +.+++.|...+. +.++.+|..|...++.++...-..+. +.-++
T Consensus 8 qLl~~l~s-pDn~vr~~Ae~~l~~~~~~-------~~~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~s 79 (1075)
T KOG2171|consen 8 QLLQQLLS-PDNEVRRQAEEALETLAKT-------EPLLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAEVQQS 79 (1075)
T ss_pred HHHHHhcC-CCchHHHHHHHHHHHhhcc-------cchHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHHHHHH
Confidence 45555665 7889999999999877653 227888888775 56889999999999988876444333 34556
Q ss_pred HHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhCCcchHhHHHhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHccccH
Q 001487 185 LHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPR 264 (1069)
Q Consensus 185 l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~ 264 (1069)
+...++..+..+..+.||+.....+..+++..- ..-+|.+++.++++.+++++..|..++.+|..+.+..+.
T Consensus 80 iks~lL~~~~~E~~~~vr~k~~dviAeia~~~l--------~e~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~ 151 (1075)
T KOG2171|consen 80 IKSSLLEIIQSETEPSVRHKLADVIAEIARNDL--------PEKWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGN 151 (1075)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHHhcc--------ccchHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhcc
Confidence 777777777776688999999999999888742 125789999999999999999999999999999999999
Q ss_pred HHHHhHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCC
Q 001487 265 FLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAET 344 (1069)
Q Consensus 265 ~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~ 344 (1069)
.+.+|++++...+.+.+++++ ..+|..+...+..++...+..+. ..+....++|.++..+....+++
T Consensus 152 ~~~~~~~~l~~lf~q~~~d~s--~~vr~~a~rA~~a~~~~~~~~~~----~~~~~~~llP~~l~vl~~~i~~~------- 218 (1075)
T KOG2171|consen 152 TLQPHLDDLLRLFSQTMTDPS--SPVRVAAVRALGAFAEYLENNKS----EVDKFRDLLPSLLNVLQEVIQDG------- 218 (1075)
T ss_pred ccchhHHHHHHHHHHhccCCc--chHHHHHHHHHHHHHHHhccchH----HHHHHHHHhHHHHHHhHhhhhcc-------
Confidence 999999999999999887654 34999999999998885321122 22344556666666554432210
Q ss_pred CCccccCCcchhhHHHHHHHHHHHcCCccchH---HHHHHHHHhhcCC--ChHHHHHHHHHHHHHHhhcHHHHH---Hh-
Q 001487 345 EDEDAGESSNYSVGQECLDRLAIALGGNTIVP---VASEQLPAYLAAP--EWQKHHAALIALAQIAEGCAKVMV---KN- 415 (1069)
Q Consensus 345 e~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~---~l~~~l~~~l~~~--~~~~r~aal~~l~~l~~~~~~~~~---~~- 415 (1069)
+......+.+++..+....| +-+-| .++.+..+...+. +...|+.|+..+-.++++.+...+ .+
T Consensus 219 ------d~~~a~~~l~~l~El~e~~p-k~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~ 291 (1075)
T KOG2171|consen 219 ------DDDAAKSALEALIELLESEP-KLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLG 291 (1075)
T ss_pred ------chHHHHHHHHHHHHHHhhch-HHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhh
Confidence 11112234445555554443 22222 3333334444443 567888888888777765432111 11
Q ss_pred ------------------------------------------------------HHHHHHHHHhhCCCCChhHHHHHHHH
Q 001487 416 ------------------------------------------------------LEQVLSMVLNSFRDPHPRVRWAAINA 441 (1069)
Q Consensus 416 ------------------------------------------------------~~~i~~~l~~~l~d~~~~vr~~a~~~ 441 (1069)
++.+++.+...+.+++|.-|.+++.+
T Consensus 292 ~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~A 371 (1075)
T KOG2171|consen 292 HTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLA 371 (1075)
T ss_pred ccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 23444555556677789999999999
Q ss_pred HHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCC-hhHH
Q 001487 442 IGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGK-QMVQ 520 (1069)
Q Consensus 442 l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~i~~~l~~~l~~~~-~~v~ 520 (1069)
|+.+++.+...+ ...++++++.+++.|+| ++|+||.+||.+++++...+.++.-..|-+.+.+.|...+.++. +.|+
T Consensus 372 ls~i~EGc~~~m-~~~l~~Il~~Vl~~l~D-phprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ 449 (1075)
T KOG2171|consen 372 LSVIAEGCSDVM-IGNLPKILPIVLNGLND-PHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQ 449 (1075)
T ss_pred HHHHHcccHHHH-HHHHHHHHHHHHhhcCC-CCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHH
Confidence 999999998887 67999999999999999 99999999999999999999887544556666678888887754 6888
Q ss_pred HHHHHHHHHHHHh-hHhhhHhhHhhhhHHHHHHHhhccCccccchhhHHHHHHHHHHHhhChhhhhhhHHHHHHHHHH-H
Q 001487 521 EGALTALASVADS-SQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMS-L 598 (1069)
Q Consensus 521 ~~al~~l~~l~~~-~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~-l 598 (1069)
..|..++-.+... .++.+.||++.++...+..+... ....+|..+..+|+.++.+.+ +.|.||.+.+|+.+.. +
T Consensus 450 ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~---~~~~v~e~vvtaIasvA~AA~-~~F~pY~d~~Mp~L~~~L 525 (1075)
T KOG2171|consen 450 AHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQS---SKPYVQEQAVTAIASVADAAQ-EKFIPYFDRLMPLLKNFL 525 (1075)
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcC---CchhHHHHHHHHHHHHHHHHh-hhhHhHHHHHHHHHHHHH
Confidence 8888777766554 56778999999999666666553 345689999999999999999 8899999999999999 4
Q ss_pred hcCCCCCCCchhhHHHHHHHHHHHHhc-CCcccchhhhhHHHHHhcccCCCccccCCCCccccccCCCcccchhhcCCce
Q 001487 599 QGSQMETDDPTTSYMLQAWARLCKCLG-QDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKR 677 (1069)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (1069)
++.+-++...+|...+.|++.++...| +.|.|+...++..+...-..+. ++++.
T Consensus 526 ~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a~eliqll~~~~~~~~----------------~~dd~--------- 580 (1075)
T KOG2171|consen 526 QNADDKDLRELRGKTMECLSLIARAVGKEKFLPLAEELIQLLLELQGSDQ----------------DDDDP--------- 580 (1075)
T ss_pred hCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHHHHHHHHHhhcccch----------------hhccc---------
Confidence 543323445688899999999999998 5699999999998876641110 11111
Q ss_pred eeeccchHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHhhccCCc-----------------C--------C---hHH
Q 001487 678 IGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFY-----------------F--------H---EEV 729 (1069)
Q Consensus 678 ~~v~~~~~~~k~~a~~~l~~l~~~~~~~~~p~~~~~~~~l~~~l~~~-----------------~--------~---~~i 729 (1069)
.+...+.+++.+++..|.+|.||++.+++.+++..+-. . + -.|
T Consensus 581 ---------~~sy~~~~warmc~ilg~~F~p~L~~Vmppl~~ta~~~p~~~~~d~~d~e~~~~~~~~e~~~~~~~e~~~I 651 (1075)
T KOG2171|consen 581 ---------LRSYMIAFWARMCRILGDDFAPFLPVVMPPLLKTARLDPDVALSDEEDEEEEQDLDGWEVVELGDKENIGI 651 (1075)
T ss_pred ---------cHHHHHHHHHHHHHHhchhhHhHHHHHhHHHHHhhccCCcccCcCchhhhhccccccchhhccCCceeeee
Confidence 13556778999999999999999999999988654210 0 0 112
Q ss_pred -------HHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHhCC-
Q 001487 730 -------RKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGP- 801 (1069)
Q Consensus 730 -------r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~v~~~~l~~l~~~i~~~~~- 801 (1069)
+..|+.+|+.+..-.+.+ -.++..+.+...+|.+...+. ..|+.+..+++-.++...-.
T Consensus 652 ~Tsvl~eK~~A~~~Lv~~a~~lk~~---------F~pYve~v~~l~v~~l~f~fh----dgVR~aa~~~~p~ll~~~~~A 718 (1075)
T KOG2171|consen 652 RTSVLDEKETACEALGEYAKELKEA---------FAPYVEQVVELMVPLLKFYFH----DGVRKAAAESMPQLLTCALKA 718 (1075)
T ss_pred eehhHHHHHHHHHHHHHHHHhhhhh---------hhhHHHHHHHHHHHHHHhhhh----hHHHHHHHHHHHHHHHHHHHH
Confidence 245666666655433222 122344444433444433333 35676777766655544321
Q ss_pred -CCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCCCChHhhhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhch--hhh
Q 001487 802 -LLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVFDQVGEILGTLIKTFKAAF--LPF 878 (1069)
Q Consensus 802 -~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~--~~~ 878 (1069)
.-++..+..+...+.+.+.+.+. .|.+.++...+...++..++.+|... .+.
T Consensus 719 ~~~~p~~l~~l~~~~~~~l~~~l~-------------------------~E~e~~vl~~vl~~f~~~i~~~G~~~L~~~~ 773 (1075)
T KOG2171|consen 719 CQGGPEYLKQLWEAIRPALIKALE-------------------------EEPETEVLSEILESFAECIEVMGDNCLNEDG 773 (1075)
T ss_pred hccChHHHHHHHHHHHHHHHHHhh-------------------------cCCcHHHHHHHHHHHHHHHHhcCcccCCcHH
Confidence 12444444444444444333221 11344555566667777777777432 123
Q ss_pred HHHHHhhhhhhhc---------C------CCCH-----------HHHHHHHHHHHHHHhHhhhhhhhhhHhHHHHHHhhc
Q 001487 879 FDELSSYLTPMWG---------K------DKTA-----------EERRIAICIFDDVAEQCREAALKYYETYLPFLLEAC 932 (1069)
Q Consensus 879 ~~~l~~~l~~~l~---------~------~~~~-----------~~r~~a~~~l~~l~~~~~~~~~~~~~~l~~~ll~~l 932 (1069)
+..+...+...+. + +... ..-..+..++..+++..+..+.+++..+.|.++..+
T Consensus 774 ~~~~~~~~~~~~l~~~~~~~~r~~~~~eed~d~~eee~~~e~d~~ll~~i~~i~~~l~k~~k~~f~p~f~~~~p~iv~~l 853 (1075)
T KOG2171|consen 774 LEALLGGLLAQLLQHFKRMQDRQEEDDEEDDDIEEEEDLDEQDAYLLDAISDILAALAKALKGSFLPFFENFLPLIVKLL 853 (1075)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHH
Confidence 3322222221110 0 0000 011224567777888888888999999999999999
Q ss_pred cCCChhHHHhhhHHHHHHHhhcCCCchHHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHHHHHhhcCCCC-C-HhhH
Q 001487 933 NDENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQFHRDSI-D-AAQV 1010 (1069)
Q Consensus 933 ~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~-~-~~~~ 1010 (1069)
.++.+.-|+-|..+++.++++++....+|.+.+++.+...+..+ +.++|.||..-+|-++.+.+..+ + +...
T Consensus 854 ~~~~~~~r~~av~~~~d~ie~~~~a~~~~~~~~~p~~~~~~~d~------~pEVRqaAsYGiGvlaq~~g~~y~~v~~~~ 927 (1075)
T KOG2171|consen 854 KSKKTVARQWAVCIFDDLIEGCGEASAKYKERFLPLVLEALQDS------DPEVRQAAAYGMGVLAQFGGEDYAPVCSEA 927 (1075)
T ss_pred hcCCcHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHHHHHcCcchHHHHHHH
Confidence 98887669999999999999999999999999999999998765 68999999999999999988875 3 5667
Q ss_pred HHHHHhhCCCCCc-HHH----HHHHHHHHHHHHhhcCCcccCcCcCChhHHHHHHHHHh
Q 001487 1011 VPAWLNCLPIKGD-LIE----AKIVHEQLCSMVERSDSDLLGPNHQYLPKIVSVFAEVS 1064 (1069)
Q Consensus 1011 ~~~~l~~lp~~~d-~~~----~~~~~~~l~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~ 1064 (1069)
+|.+.+.+-.-.- .++ .+++..++.+++..++..+ + +++++.+....|
T Consensus 928 l~~L~~~iq~~~ar~Ee~~~ateNa~gaiaki~~~~~~~i-~-----vdqvl~~~l~~L 980 (1075)
T KOG2171|consen 928 LPLLVQVLQPPLARTEENRRATENAIGAIAKILLFNPNRI-P-----VDQVLPAWLSWL 980 (1075)
T ss_pred HHHHHHHHcChhhhhHHHhHHHHHHHHHHHHHHHhCCccC-c-----HHHHHHHHHHhC
Confidence 7776665422111 233 4578888888886554443 3 566666555443
No 7
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-30 Score=286.32 Aligned_cols=689 Identities=15% Similarity=0.195 Sum_probs=459.6
Q ss_pred CChHHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc-CCCHHHHHHHHHHHHhhcccCCCCcccC--
Q 001487 19 PDSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDDSFLWPR-- 95 (1069)
Q Consensus 19 ~~~~~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~~p~~~~~~L~~il~~-~~~~~~R~~a~i~L~~~i~~~~~~~w~~-- 95 (1069)
||.+.+.+.+.+...+|++.|+.||++|+++.+ .|+ |++.|++|+.+ +.+-.+|+.|++.|||.|.+. |+.
T Consensus 1 md~~~l~~~~~~T~d~d~~~R~~AE~~L~q~~K-~pg-Fv~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~----W~~~~ 74 (1010)
T KOG1991|consen 1 MDLQSLLQIFRATIDSDAKERKAAEQQLNQLEK-QPG-FVSSLLQIIMDDGVPLPVRQAAAIYLKNKITKS----WSSHE 74 (1010)
T ss_pred CChHHHHHHHHHhcCCChHHHHHHHHHHHHhhc-CCc-HHHHHHHHHHccCCchhHHHHHHHHHHHHHHhc----CCccC
Confidence 788999999999999999999999999999999 687 57999999987 566788999999999999998 653
Q ss_pred -------CCHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCCChhHHHHHHHHHH
Q 001487 96 -------LSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFA 168 (1069)
Q Consensus 96 -------l~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~l~ 168 (1069)
+.++.|..+|+.++..+.. .+..+|.....++..|.+.++| +.||.+++.+...+++++....-+|+.++.
T Consensus 75 ~~g~~~~I~e~dk~~irenIl~~iv~-~p~~iRvql~~~l~~Ii~~D~p-~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~ 152 (1010)
T KOG1991|consen 75 APGRPFGIPEEDKAVIRENILETIVQ-VPELIRVQLTACLNTIIKADYP-EQWPGLLDKIKNLLQSQDANHVYGALLCLY 152 (1010)
T ss_pred CCCCcCCCChHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHhcCCc-ccchhHHHHHHHHhcCcchhhHHHHHHHHH
Confidence 5788999999999999997 5888999999999999999999 899999999999999999999999999999
Q ss_pred Hhhhhhh-------hhc----chhHHHHHHHHHHhhcCC--CChHHHHHHHHHHHHHHHh-hCC-cchHhHHHhhHHHHH
Q 001487 169 QLSQYIG-------DTL----TPHLKHLHAVFLNCLTNS--NNPDVKIAALNAVINFIQC-LTS-SADRDRFQDLLPLMM 233 (1069)
Q Consensus 169 ~l~~~~~-------~~~----~~~~~~l~~~l~~~l~~~--~~~~vr~~a~~~l~~l~~~-~~~-~~~~~~~~~~~~~~l 233 (1069)
.+++... ..+ ...++.+++.+.+.+..+ .+..+.+..++++..++.+ ++. -...+.|..++..++
T Consensus 153 qL~k~ye~k~~eeR~~l~~~v~~~fP~il~~~~~ll~~~s~~s~el~klIlKifks~~~~~LP~~L~~~~~f~~W~~l~l 232 (1010)
T KOG1991|consen 153 QLFKTYEWKKDEERQPLGEAVEELFPDILQIFNGLLSQESYQSVELQKLILKIFKSLIYYELPLELSAPETFTSWMELFL 232 (1010)
T ss_pred HHHHHHhhccccccccHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhCCHHhhCchhHHHHHHHHH
Confidence 9998643 112 234455555555556654 2345566677777666654 211 112344555655555
Q ss_pred HHHHHHHh----CCChH---------HHHHHHHHHHHHHccccH---------HH-----HHhHHHHHHHHHHHhcC---
Q 001487 234 RTLTESLN----NGNEA---------TAQEALELLIELAGTEPR---------FL-----RRQLVDVVGSMLQIAEA--- 283 (1069)
Q Consensus 234 ~~l~~~l~----~~~~~---------~~~~~~~~l~~l~~~~~~---------~~-----~~~~~~l~~~l~~~~~~--- 283 (1069)
..+...+. .-|++ ..+.++-.+.++.+.+++ .| ..+.+.+++..++++..
T Consensus 233 ~i~~rpvP~E~l~~d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f~~n~~~~ile~~lk~l~~~~~ 312 (1010)
T KOG1991|consen 233 SILNRPVPVEVLSLDPEDRSSWPWWKCKKWALHILNRLFERYGSPSLVVPEYKEFAQMFLKNFAQGILEVFLKILEQWRQ 312 (1010)
T ss_pred HHHcCCCChhcccCChhhcccccchhhHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55443221 11343 345677777777766532 22 23344555555555421
Q ss_pred -CCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHH-HHHHHhhcCCCCCc-ccccCCCCC------ccccCCcc
Q 001487 284 -ESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLF-AILMSMLLDIEDDP-LWHSAETED------EDAGESSN 354 (1069)
Q Consensus 284 -~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~-~~l~~~l~~~~~~~-~~~~~~~e~------ed~~~~~~ 354 (1069)
.-..+++-..++.++..++.. ...++.+.|++..++ ..++++|+..+++. .|..++.|- --++..++
T Consensus 313 ~~yls~rvl~~~l~fl~~~Vs~----~~twkll~PHl~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~~Di~ed~~sp 388 (1010)
T KOG1991|consen 313 QLYLSDRVLYYLLNFLEQCVSH----ASTWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKKFDIFEDGYSP 388 (1010)
T ss_pred cccCCHHHHHHHHHHHHHhccH----HHHHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhcCchhcccCCC
Confidence 113455666777777766663 234455666666654 45667777665544 487665431 11335566
Q ss_pred hhhHHHHHHHHHHHcCCccchHHHHHHHHHhhc--------CCChHHHHHHHHHHHHHHhhcHH--HHHHhHHH-HHHHH
Q 001487 355 YSVGQECLDRLAIALGGNTIVPVASEQLPAYLA--------APEWQKHHAALIALAQIAEGCAK--VMVKNLEQ-VLSMV 423 (1069)
Q Consensus 355 ~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~--------~~~~~~r~aal~~l~~l~~~~~~--~~~~~~~~-i~~~l 423 (1069)
..+|..++..++...| +..+|.+++++.+.++ ..+++.+++|+.++|++++...+ .+...+.. +++.+
T Consensus 389 ~~Aa~~~l~~~~~KR~-ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hV 467 (1010)
T KOG1991|consen 389 DTAALDFLTTLVSKRG-KETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHV 467 (1010)
T ss_pred cHHHHHHHHHHHHhcc-hhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHh
Confidence 7788888888888887 6888888888888776 24688999999999999965432 34445554 56888
Q ss_pred HhhCCCCChhHHHHHHHHHHHhH-hhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCc--ccccCc
Q 001487 424 LNSFRDPHPRVRWAAINAIGQLS-TDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTP--EILTPY 500 (1069)
Q Consensus 424 ~~~l~d~~~~vr~~a~~~l~~l~-~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~--~~~~~~ 500 (1069)
++.++++-...|..|||.++.++ ..++. ...+...+....++|.+.++-.||..|..||..|+.+... +.+.++
T Consensus 468 fP~f~s~~g~Lrarac~vl~~~~~~df~d---~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~h 544 (1010)
T KOG1991|consen 468 FPEFQSPYGYLRARACWVLSQFSSIDFKD---PNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAH 544 (1010)
T ss_pred hHhhcCchhHHHHHHHHHHHHHHhccCCC---hHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhh
Confidence 99999999999999999999999 44544 3467888999999998327788999999999999988652 347899
Q ss_pred hHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhHhhhHhhHhhhhHHHHHHHhhc----c--Cc--cccch-hhHHHHH
Q 001487 501 LDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNA----T--DK--SNRML-RAKSMEC 571 (1069)
Q Consensus 501 l~~i~~~l~~~l~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~----~--~~--~~~~l-r~~a~~~ 571 (1069)
++.+++.++++.+....+. .-.++..++...++.+.||...++..|.+.+... . ++ ++..+ -...+.+
T Consensus 545 vp~~mq~lL~L~ne~End~---Lt~vme~iV~~fseElsPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~T 621 (1010)
T KOG1991|consen 545 VPPIMQELLKLSNEVENDD---LTNVMEKIVCKFSEELSPFAVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGILRT 621 (1010)
T ss_pred hhHHHHHHHHHHHhcchhH---HHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHH
Confidence 9999999999988766543 4567778888899999999888888777654331 1 11 11111 1112334
Q ss_pred HHHHHHhhCh--hhh---hhhHHHHHHHHHH------------HhcCCCCCCCchhhHHHHHHHHHHHHhcCCcccchhh
Q 001487 572 ISLVGMAVGK--DKF---RDDAKQVMEVLMS------------LQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSV 634 (1069)
Q Consensus 572 l~~l~~~~~~--~~~---~~~~~~i~~~l~~------------l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 634 (1069)
+.++..++.+ +.+ .|-+-+++..++. +.....--...+...+.+.|..+.+++.+.-..|++.
T Consensus 622 i~Til~s~e~~p~vl~~le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~~~~Isp~mW~ll~li~e~~~~~~~dyf~d 701 (1010)
T KOG1991|consen 622 ISTILLSLENHPEVLKQLEPIVLPVIGFILKNDITDFYEELLEIVSSLTFLSKEISPIMWGLLELILEVFQDDGIDYFTD 701 (1010)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhcccCHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 4444444431 111 1222222222222 1000000001134455566666777777766778888
Q ss_pred hhHHHHHhcccCCCccccCCCCccccccCCCcccchhhcCCceeeeccchHHHHHHHHHHHHHHHHHhhhcccccHHHHH
Q 001487 635 VMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVA 714 (1069)
Q Consensus 635 i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~a~~~l~~l~~~~~~~~~p~~~~~~ 714 (1069)
+++.+-+.+.++.+....+.+ ...--++.+. ++..-..+.-.+.+.|++.+..++.+|++.+..|++-++
T Consensus 702 ~~~~l~N~vt~g~~~~~s~~~-------y~~il~~i~~---~~l~~e~~~D~d~~~a~kLle~iiL~~kg~~dq~iplf~ 771 (1010)
T KOG1991|consen 702 MMPALHNYVTYGTPSLLSNPD-------YLQILLEIIK---KVLTSENGEDSDCESACKLLEVIILNCKGLLDQYIPLFL 771 (1010)
T ss_pred HHHHHhhheeeCchhhhccch-------HHHHHHHHHH---HHHcCCCCchHHHHHHHHHHHHHHHHhcCcHhhHhHHHH
Confidence 888877776553221110000 0000000000 000001122234567999999999999888888888888
Q ss_pred HHHhhccCC-cCChHHHHHHHHh
Q 001487 715 PTLVPLLKF-YFHEEVRKAAVSA 736 (1069)
Q Consensus 715 ~~l~~~l~~-~~~~~ir~~a~~~ 736 (1069)
+..+..+.. ......|..+.+.
T Consensus 772 ~~a~~~l~~~~e~s~~~~~~leV 794 (1010)
T KOG1991|consen 772 ELALSRLTREVETSELRVMLLEV 794 (1010)
T ss_pred HHHHHHHhccccchHHHHHHHHH
Confidence 887766654 2245566666654
No 8
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8e-31 Score=273.76 Aligned_cols=742 Identities=18% Similarity=0.193 Sum_probs=505.4
Q ss_pred HhcCCChHHHHHHHHHHHH-hhhc---CchHHHH----HHHHHHccCCCHHHHHHHHHHHHhhcccCCCCcccCCCHHHH
Q 001487 30 HLMSTSNEQRSEAELLFNL-CKQQ---DPDSLTL----KLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQ 101 (1069)
Q Consensus 30 ~~~s~d~~~r~~A~~~L~~-~~~~---~p~~~~~----~L~~il~~~~~~~~R~~a~i~L~~~i~~~~~~~w~~l~~~~~ 101 (1069)
...+-|...|+.|--.|+. +... .|..... .+++-+. +.++-+|...+++...++++....+|+
T Consensus 56 ~~~~~d~~~Rs~aGLlLKNnvr~~~~~~~~~~~~yiKs~~l~~lg-d~~~lIr~tvGivITTI~s~~~~~~wp------- 127 (885)
T KOG2023|consen 56 RAKSEDVPTRSLAGLLLKNNVRGHYNSIPSEVLDYIKSECLHGLG-DASPLIRATVGIVITTIASTGGLQHWP------- 127 (885)
T ss_pred cccccchhHHHHhhhhHhccccccccCCChHHHHHHHHHHHhhcc-CchHHHHhhhhheeeeeecccccccch-------
Confidence 3445667789999888875 3221 2222122 2233333 567799999999999999987666783
Q ss_pred HHHHHHHHHHHhhcchhhHHHHHHHHHHHHHh-------cccCCCCchhhHHHHHHhhcCCChhHHHHHHHHHHHhhhhh
Q 001487 102 SSLKSMLLQSIQLESAKSISKKLCDTVSELAS-------NILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYI 174 (1069)
Q Consensus 102 ~~i~~~ll~~l~~e~~~~vr~~~~~~i~~i~~-------~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~ 174 (1069)
++...|.+.|.+ ++......+-.++.+|.. .+++.....-++|.+++.++++++..|..|+.++..++-..
T Consensus 128 -elLp~L~~~L~s-~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~ 205 (885)
T KOG2023|consen 128 -ELLPQLCELLDS-PDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQ 205 (885)
T ss_pred -hHHHHHHHHhcC-CcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecC
Confidence 344567777776 566666666666666654 33343455678999999999999999999999999887766
Q ss_pred hhhcchhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhCCcchHhHHHhhHHHHHHHHHHHHhCCChHHHHHHHHH
Q 001487 175 GDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALEL 254 (1069)
Q Consensus 175 ~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~ 254 (1069)
...+-.+++++++.+....+|+ +++||+..+.++..+.+.. .+.+...++.+++.+.+..++.++++...||+.
T Consensus 206 ~qal~~~iD~Fle~lFalanD~-~~eVRk~vC~alv~Llevr-----~dkl~phl~~IveyML~~tqd~dE~VALEACEF 279 (885)
T KOG2023|consen 206 TQALYVHIDKFLEILFALANDE-DPEVRKNVCRALVFLLEVR-----PDKLVPHLDNIVEYMLQRTQDVDENVALEACEF 279 (885)
T ss_pred cHHHHHHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHHHHhc-----HHhcccchHHHHHHHHHHccCcchhHHHHHHHH
Confidence 6666667899999998888887 9999999999999999874 345567788899999999999999999999999
Q ss_pred HHHHHccc--cHHHHHhHHHHHHHHHHHhcCC----------Cc-------chH--------------------------
Q 001487 255 LIELAGTE--PRFLRRQLVDVVGSMLQIAEAE----------SL-------EEG-------------------------- 289 (1069)
Q Consensus 255 l~~l~~~~--~~~~~~~~~~l~~~l~~~~~~~----------~~-------~~~-------------------------- 289 (1069)
|..+++.. ...+.||++++++.++.-+.-+ +. +++
T Consensus 280 wla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe 359 (885)
T KOG2023|consen 280 WLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDE 359 (885)
T ss_pred HHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccc
Confidence 99999854 5778999999999988643111 00 011
Q ss_pred -----------HHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCcchhhH
Q 001487 290 -----------TRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVG 358 (1069)
Q Consensus 290 -----------~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~e~ed~~~~~~~~~a 358 (1069)
+|..+..++.-++. -|-..++|.+++.+++.-..++|. .+.++
T Consensus 360 ~DDdD~~~dWNLRkCSAAaLDVLan-------------vf~~elL~~l~PlLk~~L~~~~W~-------------vrEag 413 (885)
T KOG2023|consen 360 DDDDDAFSDWNLRKCSAAALDVLAN-------------VFGDELLPILLPLLKEHLSSEEWK-------------VREAG 413 (885)
T ss_pred cccccccccccHhhccHHHHHHHHH-------------hhHHHHHHHHHHHHHHHcCcchhh-------------hhhhh
Confidence 22222222222222 123456666666665443334443 34466
Q ss_pred HHHHHHHHHHcC--CccchHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHH-HHHHhHHHHHHHHHhhCCCCChhHH
Q 001487 359 QECLDRLAIALG--GNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAK-VMVKNLEQVLSMVLNSFRDPHPRVR 435 (1069)
Q Consensus 359 ~~~l~~l~~~~~--~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~-~~~~~~~~i~~~l~~~l~d~~~~vr 435 (1069)
.-+++.+++.+- -...+|.++|++.+.+.++.+-+|...++.|+..+..... .-..++..++.-+++.+-|.+.+|+
T Consensus 414 vLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQ 493 (885)
T KOG2023|consen 414 VLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQ 493 (885)
T ss_pred HHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHH
Confidence 667777776553 1245677899999999999999999999999887764332 2336788888888889999999999
Q ss_pred HHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccc-cCchHHHHHHHHHHh--
Q 001487 436 WAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEIL-TPYLDGIVSKLLVLL-- 512 (1069)
Q Consensus 436 ~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~-~~~l~~i~~~l~~~l-- 512 (1069)
++||.++..+-+.-+++. .+|+..++..+..+++..+..++ .-...|++.+++..+...- ..|++-++|.|++-.
T Consensus 494 EAAcsAfAtleE~A~~eL-Vp~l~~IL~~l~~af~kYQ~KNL-lILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~ 571 (885)
T KOG2023|consen 494 EAACSAFATLEEEAGEEL-VPYLEYILDQLVFAFGKYQKKNL-LILYDAIGTLADSVGHALNKPAYIQILMPPLIEKWEL 571 (885)
T ss_pred HHHHHHHHHHHHhccchh-HHHHHHHHHHHHHHHHHHhhcce-ehHHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHh
Confidence 999999999999888888 58999999999988875322222 2234455556555432211 257888888888744
Q ss_pred -hcCChhHHHHHHHHHHHHHHhhHhhhHhhHhhhhHHHHHHHhhccCccccchhhHHHHHHHHHHHhhChhhhhhhHHHH
Q 001487 513 -QNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQV 591 (1069)
Q Consensus 513 -~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i 591 (1069)
.+.+.++ -..++|+++++.+.+..|.||.+.+......++++ |+..++....+.
T Consensus 572 lsd~DKdL-fPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~---------------t~q~~~~~~~~~--------- 626 (885)
T KOG2023|consen 572 LSDSDKDL-FPLLECLSSIASALGVGFLPYAQPVYQRCFRILQK---------------TLQLLAKVQQDP--------- 626 (885)
T ss_pred cCcccchH-HHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHH---------------HHHHHHhccCCc---------
Confidence 4444444 36799999999999999999998888877777654 222222221111
Q ss_pred HHHHHHHhcCCCC-CCCchhhHHHHHHHHHHHHhcCCcccchh--hhhHHHHHhcccCCCccccCCCCccccccCCCccc
Q 001487 592 MEVLMSLQGSQME-TDDPTTSYMLQAWARLCKCLGQDFLPYMS--VVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSM 668 (1069)
Q Consensus 592 ~~~l~~l~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~l~--~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 668 (1069)
..+ .+....-.++..++.+++.+|..+.+.+. .++..++++++..
T Consensus 627 ----------~~~~pdkdfiI~sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~~D~---------------------- 674 (885)
T KOG2023|consen 627 ----------TVEAPDKDFIIVSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQDE---------------------- 674 (885)
T ss_pred ----------cccCCCcceEEEeHHHHhHHHHHhhhchHHHhhhccHHHHHHHHhccC----------------------
Confidence 000 01112334567788899999998888765 5778888887531
Q ss_pred chhhcCCceeeeccchHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHhhccCCcCChHHHHHHHHhHHHHHHHHHHHH
Q 001487 669 ETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAI 748 (1069)
Q Consensus 669 ~~~~~~~~~~~v~~~~~~~k~~a~~~l~~l~~~~~~~~~p~~~~~~~~l~~~l~~~~~~~ir~~a~~~l~~l~~~~~~~~ 748 (1069)
.-+.|++|+..||.+.+.|...+.|++..+++.+..-++.. +-++-..|++++|.+.....
T Consensus 675 ---------------~peVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg~Nl~~~-~isv~nNA~WAiGeia~k~g--- 735 (885)
T KOG2023|consen 675 ---------------VPEVRQSAFALLGDLTKACFEHVIPNLADFLPILGANLNPE-NISVCNNAIWAIGEIALKMG--- 735 (885)
T ss_pred ---------------ChHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhhcCChh-hchHHHHHHHHHHHHHHHhc---
Confidence 12458899999999999999999999999999998776643 56677888888888765431
Q ss_pred HcCCCCCCCHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhHHH
Q 001487 749 EKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRE 828 (1069)
Q Consensus 749 ~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~v~~~~l~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 828 (1069)
...++++..++..|...++.... -..+++..+-.++.+|. ..|+.+.+.++.+++.+...+...+
T Consensus 736 ----------~~~~~~v~~vl~~L~~iin~~~~---~~tllENtAITIGrLg~-~~Pe~vAp~l~~f~~pWc~sl~~i~- 800 (885)
T KOG2023|consen 736 ----------LKMKQYVSPVLEDLITIINRQNT---PKTLLENTAITIGRLGY-ICPEEVAPHLDSFMRPWCTSLRNID- 800 (885)
T ss_pred ----------hhhhhHHHHHHHHHHHHhcccCc---hHHHHHhhhhhhhhhhc-cCHHhcchhHHHHHHHHHHHhcccc-
Confidence 13557788888888888765433 23577888888888884 6778888888888887776553221
Q ss_pred HHHHhcCCCCChHhhhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhchhhhHHHHHhhhhhhhcCCCCHHHHHHHHHHHHH
Q 001487 829 RAERAKAEDFDAEESELIKEENEQEEEVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKTAEERRIAICIFDD 908 (1069)
Q Consensus 829 ~~~~~~~e~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~r~~a~~~l~~ 908 (1069)
|.+ +.+. +..-+..+++..|..+..-+..+...+... .....+.|+.-..++..
T Consensus 801 ----------Dne----------EK~s----AFrG~c~mi~vNp~~vv~~~~f~c~aiAsw--~np~~~l~~~f~kiL~g 854 (885)
T KOG2023|consen 801 ----------DNE----------EKES----AFRGLCNMINVNPSGVVSSFIFICDAIASW--SNPEDDLRDEFYKILQG 854 (885)
T ss_pred ----------cch----------hHHH----HHHHHHHheeeCchhhhhhhHHHHHHHhcc--cChHHHHHHHHHHHHHH
Confidence 111 1122 333444556666666544444344333332 23345567666666666
Q ss_pred HHhHhhhhhhh-hhHhHHHHHHhhc
Q 001487 909 VAEQCREAALK-YYETYLPFLLEAC 932 (1069)
Q Consensus 909 l~~~~~~~~~~-~~~~l~~~ll~~l 932 (1069)
.-...|....+ +..++-|.+.+++
T Consensus 855 ~k~qvg~~nW~~~~~qf~P~~~erl 879 (885)
T KOG2023|consen 855 FKNQVGKINWQRFSEQFPPPLKERL 879 (885)
T ss_pred HHHHhhhhhHHHHhhcCChhHHHHH
Confidence 65555544333 5555555555443
No 9
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=100.00 E-value=1.5e-28 Score=266.48 Aligned_cols=885 Identities=15% Similarity=0.203 Sum_probs=583.3
Q ss_pred HHHHHccCCCHHHHHHHHHHHHhhcccCCCCcccCCCHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCC
Q 001487 61 LAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENG 140 (1069)
Q Consensus 61 L~~il~~~~~~~~R~~a~i~L~~~i~~~~~~~w~~l~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~~~~ 140 (1069)
|++-++ +++..+|.||.--|-+-+.+. --+++.+.-..+...+++.|.+ .++++++.+..|+|.+++. .+..+
T Consensus 10 Llekmt-ssDKDfRfMAtsDLm~eLqkd----si~Ld~dSe~kvv~~lLklL~D-~ngEVQnlAVKClg~lvsK-vke~~ 82 (1233)
T KOG1824|consen 10 LLEKMT-SSDKDFRFMATSDLMTELQKD----SIKLDDDSERKVVKMLLKLLED-KNGEVQNLAVKCLGPLVSK-VKEDQ 82 (1233)
T ss_pred HHHHcc-CCCcchhhhhHHHHHHHHHhh----hhhccccchhHHHHHHHHHHhc-cCcHHHHHHHHHHHHHHhh-chHHH
Confidence 444443 678899999999988888775 4457777777788899999997 6999999999999999986 44467
Q ss_pred chhhHHHHHHhhcCCChhHHHHHHHHHHHhhhhhhhh----cc-hhHHHHHHHHHHhhcCC-CChHHHHHHHHHHHHHHH
Q 001487 141 WPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDT----LT-PHLKHLHAVFLNCLTNS-NNPDVKIAALNAVINFIQ 214 (1069)
Q Consensus 141 w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~----~~-~~~~~l~~~l~~~l~~~-~~~~vr~~a~~~l~~l~~ 214 (1069)
...+...+...+-++....|..+-..|.......++. +. ..+..+.|.+.+++... ....++..++..+..+..
T Consensus 83 le~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~ls 162 (1233)
T KOG1824|consen 83 LETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLS 162 (1233)
T ss_pred HHHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHH
Confidence 7888888888877777777877777777666665542 22 24566666666665543 245688889999888887
Q ss_pred hhCCcchHhHHHhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHccccHHHHHhHHHHHHHHHHHhcCCCcchHHHHHH
Q 001487 215 CLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLA 294 (1069)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a 294 (1069)
.+..- +.++-..++..+...++++...+|+.++.+++.++...+... +..+++.+++-+.++.....+| ..
T Consensus 163 r~g~l-----l~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~l---y~~li~~Ll~~L~~~~q~~~~r-t~ 233 (1233)
T KOG1824|consen 163 RFGTL-----LPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDL---YVELIEHLLKGLSNRTQMSATR-TY 233 (1233)
T ss_pred hhccc-----CcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHH---HHHHHHHHHhccCCCCchHHHH-HH
Confidence 76321 111222455555555667778899999999999988766543 3456667777666554444444 45
Q ss_pred HHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCcchhhHHHHHHHHHHHcCCccc
Q 001487 295 IEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTI 374 (1069)
Q Consensus 295 ~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~~~ 374 (1069)
++++.++++..+ .++..++..++|.+.+++...+++ ++..+....++++.+....+ +.+
T Consensus 234 Iq~l~~i~r~ag------~r~~~h~~~ivp~v~~y~~~~e~~--------------dDELrE~~lQale~fl~rcp-~ei 292 (1233)
T KOG1824|consen 234 IQCLAAICRQAG------HRFGSHLDKIVPLVADYCNKIEED--------------DDELREYCLQALESFLRRCP-KEI 292 (1233)
T ss_pred HHHHHHHHHHhc------chhhcccchhhHHHHHHhcccccC--------------cHHHHHHHHHHHHHHHHhCh-hhh
Confidence 788889988421 234568888999999987655322 11245566777777777765 444
Q ss_pred ---hHHHHHHHHHhhc----------------------------------CCChHHHHHHHHHHHHHHhhcHHHHHHhHH
Q 001487 375 ---VPVASEQLPAYLA----------------------------------APEWQKHHAALIALAQIAEGCAKVMVKNLE 417 (1069)
Q Consensus 375 ---~~~l~~~l~~~l~----------------------------------~~~~~~r~aal~~l~~l~~~~~~~~~~~~~ 417 (1069)
.|.++..+.+++. |-+|++|++|..++..++....+.+.....
T Consensus 293 ~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q 372 (1233)
T KOG1824|consen 293 LPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQ 372 (1233)
T ss_pred cccchHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 4445555555443 013999999999999999888888888888
Q ss_pred HHHHHHHhhCCCCChhHHHHHHHHHHHhHhhhchh--------------------HHhhhhhhhHHHHHhhccCCCChhH
Q 001487 418 QVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPD--------------------LQNQFHPQVLPALAGAMDDFQNPRV 477 (1069)
Q Consensus 418 ~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--------------------~~~~~~~~il~~l~~~l~~~~~~~v 477 (1069)
.+-|.++..+++....|+...+.+.-.+....++- ......+.++..+-+.+++ .+...
T Consensus 373 ~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~-ks~kt 451 (1233)
T KOG1824|consen 373 TLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLRE-KSVKT 451 (1233)
T ss_pred HhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHhh-ccccc
Confidence 89999999999999999998888877766544321 1112234455555566666 55557
Q ss_pred HHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCC--hhHHHHHHHHHHH-HHHhhHhhhHhhHhhhhHHHHHHHh
Q 001487 478 QAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGK--QMVQEGALTALAS-VADSSQEHFQKYYDAVMPFLKAILV 554 (1069)
Q Consensus 478 ~~~a~~al~~l~~~~~~~~~~~~l~~i~~~l~~~l~~~~--~~v~~~al~~l~~-l~~~~~~~~~~~~~~i~~~l~~~l~ 554 (1069)
+..+...|..++...+. .+.++++.++|.+...+++.+ ...+..++..+.. ++.+.++.|.||.+.+.|.+.....
T Consensus 452 ~~~cf~lL~eli~~lp~-~l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~ 530 (1233)
T KOG1824|consen 452 RQGCFLLLTELINVLPG-ALAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVG 530 (1233)
T ss_pred hhhHHHHHHHHHHhCcc-hhhhcccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhc
Confidence 77788888888888764 578999999999999998765 3455556655554 4555667899999999999888765
Q ss_pred hccCccccchhhHHHHHHHHHHHhhCh------hhhhhhHHHHHHHHHH-HhcCCCCCCCchhhHHHHHHHHHHHHhcCC
Q 001487 555 NATDKSNRMLRAKSMECISLVGMAVGK------DKFRDDAKQVMEVLMS-LQGSQMETDDPTTSYMLQAWARLCKCLGQD 627 (1069)
Q Consensus 555 ~~~~~~~~~lr~~a~~~l~~l~~~~~~------~~~~~~~~~i~~~l~~-l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 627 (1069)
+ ....+-..|+-....+.+.+.+ -.+.||+.+++...++ +... +.|-.+|+.++.|++.+...+|+.
T Consensus 531 d----~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~--d~DqeVkeraIscmgq~i~~fgD~ 604 (1233)
T KOG1824|consen 531 D----PFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKAT--DSDQEVKERAISCMGQIIANFGDF 604 (1233)
T ss_pred C----chHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhcc--cccHHHHHHHHHHHHHHHHHHhhh
Confidence 4 2344555566666677766542 2356889998887776 4443 334569999999999999999999
Q ss_pred cccchhhhhHHHHHhcccCCCccccCCCCccccccCCCcccchhhcCCceeeeccchHHHHHHHHHHHHHHHHH-hhhcc
Q 001487 628 FLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADE-LKEGF 706 (1069)
Q Consensus 628 ~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~a~~~l~~l~~~-~~~~~ 706 (1069)
....+|.+++.+++.++.+. .|..|++++..++.+ ..-.+
T Consensus 605 l~~eL~~~L~il~eRl~nEi---------------------------------------TRl~AvkAlt~Ia~S~l~i~l 645 (1233)
T KOG1824|consen 605 LGNELPRTLPILLERLGNEI---------------------------------------TRLTAVKALTLIAMSPLDIDL 645 (1233)
T ss_pred hhhhhHHHHHHHHHHHhchh---------------------------------------HHHHHHHHHHHHHhccceeeh
Confidence 99999999999999996432 267788888888776 34456
Q ss_pred cccHHHHHHHHhhccCCcCChHHHHHHHHhHHHHHHHHHHHHHcC--------CC---C------------------CCC
Q 001487 707 FPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKG--------LA---P------------------GRN 757 (1069)
Q Consensus 707 ~p~~~~~~~~l~~~l~~~~~~~ir~~a~~~l~~l~~~~~~~~~~~--------~~---~------------------~~~ 757 (1069)
.|.+.++++.+...+... ....|.+...++..|+......+.+. -+ . -..
T Consensus 646 ~~~l~~il~~l~~flrK~-~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lisesdlhvt~~a~~~L~tl~~~~ 724 (1233)
T KOG1824|consen 646 SPVLTEILPELASFLRKN-QRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISESDLHVTQLAVAFLTTLAIIQ 724 (1233)
T ss_pred hhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcc
Confidence 788888888887776543 55666666666666665442211000 00 0 000
Q ss_pred HHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHH-----------------HHHhC-CC---CC---HHHHHHHHH
Q 001487 758 ESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNEC-----------------IQISG-PL---LD---EGQVRSIVD 813 (1069)
Q Consensus 758 ~~~~~~~~~~i~~~l~~~~~~~~~~~v~~~~l~~l~~~-----------------i~~~~-~~---~~---~~~~~~~~~ 813 (1069)
+..+-...+.+++.++..+.+. -+....+.++... +..+. +. .+ +.+.---+.
T Consensus 725 ps~l~~~~~~iL~~ii~ll~Sp---llqg~al~~~l~~f~alV~t~~~~l~y~~l~s~lt~PV~~~~~~~l~kqa~~siA 801 (1233)
T KOG1824|consen 725 PSSLLKISNPILDEIIRLLRSP---LLQGGALSALLLFFQALVITKEPDLDYISLLSLLTAPVYEQVTDGLHKQAYYSIA 801 (1233)
T ss_pred cHHHHHHhhhhHHHHHHHhhCc---cccchHHHHHHHHHHHHHhcCCCCccHHHHHHHHcCCcccccccchhHHHHHHHH
Confidence 0011112222333333222221 0011111111110 00000 00 00 000000011
Q ss_pred HHHHHHHHHHhh---------------------HHH----HHHHhcC-CCC-ChHhh--hHhhhhhhhHHHHHHHHHHHH
Q 001487 814 EIKQVITASSSR---------------------KRE----RAERAKA-EDF-DAEES--ELIKEENEQEEEVFDQVGEIL 864 (1069)
Q Consensus 814 ~l~~~l~~~~~~---------------------~~~----~~~~~~~-e~~-d~~~~--~~~~~~~~~~~~~~~~~~~~l 864 (1069)
.+...|.....+ .+. ..++.|. .+. -..+. -.+..-....++++.+++..+
T Consensus 802 ~cvA~Lt~~~~~~s~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s~~~e~~~~iieaf~sp~edvksAAs~AL 881 (1233)
T KOG1824|consen 802 KCVAALTCACPQKSKSLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDLSPQNELKDTIIEAFNSPSEDVKSAASYAL 881 (1233)
T ss_pred HHHHHHHHhccccchhHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCCCcchhhHHHHHHHcCCChHHHHHHHHHHh
Confidence 111112111110 000 0111111 111 00111 111222346788999999999
Q ss_pred HHHHHHhhhchhhhHHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHHhHhhhh-hhhhhHhHHHHHHhhccCCChhHHHhh
Q 001487 865 GTLIKTFKAAFLPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREA-ALKYYETYLPFLLEACNDENQDVRQAA 943 (1069)
Q Consensus 865 ~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~r~~a~~~l~~l~~~~~~~-~~~~~~~l~~~ll~~l~~~~~~vr~~a 943 (1069)
|.++.+.-+.|.|+ ++..+. ..+.....-+..+.+++...... ..++.+.||..+.+.+.......|...
T Consensus 882 Gsl~vgnl~~yLpf-------il~qi~--sqpk~QyLLLhSlkevi~~~svd~~~~~v~~IW~lL~k~cE~~eegtR~vv 952 (1233)
T KOG1824|consen 882 GSLAVGNLPKYLPF-------ILEQIE--SQPKRQYLLLHSLKEVIVSASVDGLKPYVEKIWALLFKHCECAEEGTRNVV 952 (1233)
T ss_pred hhhhcCchHhHHHH-------HHHHHh--cchHhHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHhcccchhhhHHHH
Confidence 99988766666544 444332 22333334567888887665544 356999999999999999999999999
Q ss_pred hHHHHHHHhhcCCCchHHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHHHHHhhcCCCC--CHhhHHHHHHhhCCCC
Q 001487 944 VYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQFHRDSI--DAAQVVPAWLNCLPIK 1021 (1069)
Q Consensus 944 ~~~lg~l~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~--~~~~~~~~~l~~lp~~ 1021 (1069)
+.|||.++...|+. +++.|...+..+ ....|..+++++-..+..+|+.+ .+.+.+..++..+..
T Consensus 953 AECLGkL~l~epes-------LlpkL~~~~~S~------a~~~rs~vvsavKfsisd~p~~id~~lk~~ig~fl~~~~d- 1018 (1233)
T KOG1824|consen 953 AECLGKLVLIEPES-------LLPKLKLLLRSE------ASNTRSSVVSAVKFSISDQPQPIDPLLKQQIGDFLKLLRD- 1018 (1233)
T ss_pred HHHhhhHHhCChHH-------HHHHHHHHhcCC------CcchhhhhhheeeeeecCCCCccCHHHHHHHHHHHHHHhC-
Confidence 99999999998864 566776666555 34688899999998888889877 367888889988864
Q ss_pred CcHHHHHHHHHHHHHHHhhcCCcccCcCcCChhHHHHHH
Q 001487 1022 GDLIEAKIVHEQLCSMVERSDSDLLGPNHQYLPKIVSVF 1060 (1069)
Q Consensus 1022 ~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~i~~~~ 1060 (1069)
.|.+.++.++..+...++..|..+-+. +|.+++.+
T Consensus 1019 pDl~VrrvaLvv~nSaahNKpslIrDl----lpeLLp~L 1053 (1233)
T KOG1824|consen 1019 PDLEVRRVALVVLNSAAHNKPSLIRDL----LPELLPLL 1053 (1233)
T ss_pred CchhHHHHHHHHHHHHHccCHhHHHHH----HHHHHHHH
Confidence 578889999999999997777777777 88888754
No 10
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.9e-25 Score=238.38 Aligned_cols=721 Identities=17% Similarity=0.202 Sum_probs=490.3
Q ss_pred HhCCChHHHHHHHHHHHHHHccccHHHHHhHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHhhhccchhhh------
Q 001487 240 LNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMR------ 313 (1069)
Q Consensus 240 l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~------ 313 (1069)
..++|..+|+.+-.-|..+.... ++.++..+...+.+.......|..|--.|..-... +.|....
T Consensus 10 tlSpD~n~~~~Ae~~l~~~~~~n-------f~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~a--kd~~~k~~~~qRW 80 (859)
T KOG1241|consen 10 TLSPDQNVRKRAEKQLEQAQSQN-------FPQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTA--KDPERKQQYQQRW 80 (859)
T ss_pred HcCCCcchHHHHHHHHHHHHhcc-------HHHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhcc--CCHHHHHHHHHHH
Confidence 34678888888877777666532 33344444444444445566666654444332221 1111100
Q ss_pred -cchhhH-HHHHHHHHHhhcCCCCCcccccCCCCCccccCCcchhhHHHHHHHHHHHcCCccchHHHHHHHHHhhcCCCh
Q 001487 314 -KLPQFI-NRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEW 391 (1069)
Q Consensus 314 -~~~~~~-~~l~~~l~~~l~~~~~~~~~~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~ 391 (1069)
.++.-. +.+=..++..|..+ +......|.+++..++..-=|...+|.+++.+.....+..+
T Consensus 81 l~l~~e~reqVK~~il~tL~~~-----------------ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~~~~ 143 (859)
T KOG1241|consen 81 LQLPAEIREQVKNNILRTLGSP-----------------EPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNVGEEQA 143 (859)
T ss_pred HcCCHHHHHHHHHHHHHHcCCC-----------------CCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhcccccc
Confidence 011111 11222222333322 22345678899999886533477889999998888776554
Q ss_pred -HHHHHHHHHHHHHHhhcH-HHHHHhHHHHHHHHHhhCC--CCChhHHHHHHHHHHHhHhhhchhHHhh-hhhhhHHHHH
Q 001487 392 -QKHHAALIALAQIAEGCA-KVMVKNLEQVLSMVLNSFR--DPHPRVRWAAINAIGQLSTDLGPDLQNQ-FHPQVLPALA 466 (1069)
Q Consensus 392 -~~r~aal~~l~~l~~~~~-~~~~~~~~~i~~~l~~~l~--d~~~~vr~~a~~~l~~l~~~~~~~~~~~-~~~~il~~l~ 466 (1069)
.+|++++.++|.+++... +.+..+...++..++.+.+ .++..||-+|..+|-.-.+..+..+..+ .-+-++..++
T Consensus 144 ~~~k~~slealGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvc 223 (859)
T KOG1241|consen 144 SMVKESSLEALGYICEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVC 223 (859)
T ss_pred hHHHHHHHHHHHHHHccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeee
Confidence 599999999999998754 5666778888888888876 5677899999999987666655444222 2445777788
Q ss_pred hhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHH-HHHHHHHHhhcCChhHHHHHHHHHHHHHHh-------hHhhh
Q 001487 467 GAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDG-IVSKLLVLLQNGKQMVQEGALTALASVADS-------SQEHF 538 (1069)
Q Consensus 467 ~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~-i~~~l~~~l~~~~~~v~~~al~~l~~l~~~-------~~~~~ 538 (1069)
..-+. ++.+++.+|..+|.++....= +.+.+|... ++..-+..+.+.+.+|.-.+++.+++++.. .++.+
T Consensus 224 Eatq~-~d~~i~~aa~~ClvkIm~LyY-~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~ 301 (859)
T KOG1241|consen 224 EATQS-PDEEIQVAAFQCLVKIMSLYY-EFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAV 301 (859)
T ss_pred ecccC-CcHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888 899999999999888876432 346778776 777778888889999999999999988753 22222
Q ss_pred HhhH------------hhhhHHHHHHHhhc---cCccccchhhHHHHHHHHHHHhhChhhhhhhHHHHHHHHHHHhcCCC
Q 001487 539 QKYY------------DAVMPFLKAILVNA---TDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQM 603 (1069)
Q Consensus 539 ~~~~------------~~i~~~l~~~l~~~---~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~l~~~~~ 603 (1069)
..+. +.++|.|.+.|.+. .++++|.....|-.|+..+++.+| +.+.|++-++++- .+.++
T Consensus 302 d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~-D~Iv~~Vl~Fiee--~i~~p-- 376 (859)
T KOG1241|consen 302 DQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVG-DDIVPHVLPFIEE--NIQNP-- 376 (859)
T ss_pred hcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhc-ccchhhhHHHHHH--hcCCc--
Confidence 2233 37899999998772 234567777778889999999999 6666654444431 12221
Q ss_pred CCCCchhhHHHHHHHHHHHHhc-CCcccchhhhhHHHHHhcccCCCccccCCCCccccccCCCcccchhhcCCceeeecc
Q 001487 604 ETDDPTTSYMLQAWARLCKCLG-QDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKT 682 (1069)
Q Consensus 604 ~~~~~~~~~~~~~~~~l~~~~~-~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 682 (1069)
+..-|+.+.-+|+.+-.... ....|+.+..+|.+++.+. ++..
T Consensus 377 --dwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~-D~sl--------------------------------- 420 (859)
T KOG1241|consen 377 --DWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMS-DPSL--------------------------------- 420 (859)
T ss_pred --chhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhc-Cchh---------------------------------
Confidence 22356777777887765433 3378999999999998886 3322
Q ss_pred chHHHHHHHHHHHHHHHHHhhhcccc--cHHHHHHHHhhccCCcCChHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHH
Q 001487 683 SVLEEKATACNMLCCYADELKEGFFP--WIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESY 760 (1069)
Q Consensus 683 ~~~~~k~~a~~~l~~l~~~~~~~~~p--~~~~~~~~l~~~l~~~~~~~ir~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~ 760 (1069)
..|..+.-++|.+++.++....+ |+..++..++..+.| .+.+-..+|+++..|...+..+... .|..+ .
T Consensus 421 ---~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D--ePrva~N~CWAf~~Laea~~eA~~s---~~qt~-~ 491 (859)
T KOG1241|consen 421 ---WVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND--EPRVASNVCWAFISLAEAAYEAAVS---NGQTD-P 491 (859)
T ss_pred ---hhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh--CchHHHHHHHHHHHHHHHHHHhccC---CCCCC-c
Confidence 22344556789999888776555 567888888888887 6888889999988888766543221 11111 1
Q ss_pred HHHHHHHHHHHHHHHHccC--CcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCCC
Q 001487 761 VKQLSDFIIPALVEALHKE--PDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDF 838 (1069)
Q Consensus 761 ~~~~~~~i~~~l~~~~~~~--~~~~v~~~~l~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~e~~ 838 (1069)
..++++.++..|++.-... .+.+.|.+++++|.+++..+.. ...+.+..+..+....+. .+...+. .
T Consensus 492 ~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~-----~vy~~v~~~~l~il~kl~---q~i~~~~---l 560 (859)
T KOG1241|consen 492 ATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTD-----DVYPMVQKLTLVILEKLD---QTISSQI---L 560 (859)
T ss_pred cchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcH-----HHHHHHHHHHHHHHHHHH---HHHHHHh---c
Confidence 2367788888888775432 4567899999999999988653 222233332222222111 1111000 0
Q ss_pred ChHhhhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhchhhhHHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHHhHhhhhhh
Q 001487 839 DAEESELIKEENEQEEEVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAAL 918 (1069)
Q Consensus 839 d~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~r~~a~~~l~~l~~~~~~~~~ 918 (1069)
+.++. +.-.++-...+.+++.+.+..+.++.++.+.++..++.++....+......|+..++.+++..|..+.
T Consensus 561 ~~~dr-------~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~ 633 (859)
T KOG1241|consen 561 SLADR-------AQLNELQSLLCNTLQSIIRKVGSDIREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFA 633 (859)
T ss_pred cHhhH-------HHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHH
Confidence 00111 13455667789999999999999999999999999988886556666778899999999999999999
Q ss_pred hhhHhHHHHHHhhcc-CCChhHHHhhhHHHHHHHhhcCCCchHHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHHHH
Q 001487 919 KYYETYLPFLLEACN-DENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKI 997 (1069)
Q Consensus 919 ~~~~~l~~~ll~~l~-~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~l~~i 997 (1069)
.|.+.+.|.+...|+ -.+..|+.+|+..+|.++....+.|.||...++..|.+.|++|.. .+.++=-+.+++|-|
T Consensus 634 kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~Lss~~~----hR~vKP~IlS~FgDI 709 (859)
T KOG1241|consen 634 KYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYCDELMTVLVQCLSSPNL----HRNVKPAILSVFGDI 709 (859)
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHccCccc----cccccchHHHHHHHH
Confidence 999999999999995 478999999999999999999999999999999999999998853 467888899999999
Q ss_pred HhhcCCCC--CHhhHHHHHHhhC---CCCCcHH-------HHHHHHHHHHHHHhhcC-----CcccCcCcCChhHHHHHH
Q 001487 998 CQFHRDSI--DAAQVVPAWLNCL---PIKGDLI-------EAKIVHEQLCSMVERSD-----SDLLGPNHQYLPKIVSVF 1060 (1069)
Q Consensus 998 ~~~~~~~~--~~~~~~~~~l~~l---p~~~d~~-------~~~~~~~~l~~l~~~~~-----~~~~~~~~~~~~~i~~~~ 1060 (1069)
...-+..+ +++.++|.+-+.- +...|++ .++.+++....+++--+ ..+++ |+|.|++.+
T Consensus 710 AlaIg~~F~~Yl~~vm~llq~as~~~~d~~~~~~~dYvd~LRe~~leay~gi~qglk~~~~~~~~~p----~v~~I~sfi 785 (859)
T KOG1241|consen 710 ALAIGADFEPYLEMVMPLLQQASSVQTDPADDSMVDYVDELREGILEAYTGIIQGLKTHADVMLVQP----YVPHIISFI 785 (859)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhc----chHHHHHHH
Confidence 99887766 5788887655433 1122222 23444444444443222 12233 599999988
Q ss_pred HHHh
Q 001487 1061 AEVS 1064 (1069)
Q Consensus 1061 ~~~~ 1064 (1069)
.++-
T Consensus 786 ~~I~ 789 (859)
T KOG1241|consen 786 DRIA 789 (859)
T ss_pred HHHh
Confidence 7764
No 11
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.4e-24 Score=233.45 Aligned_cols=689 Identities=16% Similarity=0.213 Sum_probs=442.5
Q ss_pred ChHHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc-CCCHHHHHHHHHHHHhhcccCCCCccc----
Q 001487 20 DSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDDSFLWP---- 94 (1069)
Q Consensus 20 ~~~~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~~p~~~~~~L~~il~~-~~~~~~R~~a~i~L~~~i~~~~~~~w~---- 94 (1069)
+.+.+.+.|....+||++.|+.||+.|.++.. |++ |...+++++.+ ..++.+|..|++.+||.++++ |.
T Consensus 3 ~le~l~~~l~qTl~pdps~rk~aEr~L~~~e~-q~~-y~l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~----W~~~~~ 76 (960)
T KOG1992|consen 3 NLETLANYLLQTLSPDPSVRKPAERALRSLEG-QQN-YPLLLLNLVANGQQDPQIRVAAAVYFKNYIKRN----WIPAED 76 (960)
T ss_pred cHHHHHHHHHhcCCCCCccCchHHHHHHHhcc-CCC-chHHHHHHHhccCcChhHHHHHHHHHHHHHHhc----cCcCCC
Confidence 56788889999999999999999999999988 554 56788888887 558999999999999999998 64
Q ss_pred ---CCCHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCCChhHHHHHHHHHHHhh
Q 001487 95 ---RLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLS 171 (1069)
Q Consensus 95 ---~l~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~ 171 (1069)
++.++.++.||..++..+.+ ....++..+.++++.|+++++| +.||+|+|.+...+++.|-++-.+.+..-..+.
T Consensus 77 ~~~~i~~~~~e~ikslIv~lMl~-s~~~iQ~qlseal~~Ig~~DFP-~kWptLl~dL~~~ls~~D~~~~~gVL~tahsiF 154 (960)
T KOG1992|consen 77 SPIKIIEEDREQIKSLIVTLMLS-SPFNIQKQLSEALSLIGKRDFP-DKWPTLLPDLVARLSSGDFNVINGVLVTAHSIF 154 (960)
T ss_pred CccccchhHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHhccccc-hhhHHHHHHHHhhccccchHHHHHHHHHHHHHH
Confidence 47788999999999999997 5789999999999999999999 899999999999999999888777777777788
Q ss_pred hhhhhhcc---------hhHH----HHHHHHHH---hhcC-CCChH---HHHHHHHHHHHHHHhhCCcchHhHHHhhHHH
Q 001487 172 QYIGDTLT---------PHLK----HLHAVFLN---CLTN-SNNPD---VKIAALNAVINFIQCLTSSADRDRFQDLLPL 231 (1069)
Q Consensus 172 ~~~~~~~~---------~~~~----~l~~~l~~---~l~~-~~~~~---vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ 231 (1069)
+.+...++ -.++ .+..++.+ ..+. +++.. +-...+..+..+...+...+-++.|.+++..
T Consensus 155 kr~R~efrSdaL~~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~~~~~~l~~lf~vlll~~klfysLn~QDiPEFFEdnm~~ 234 (960)
T KOG1992|consen 155 KRYRPEFRSDALWLEIKLVLDRFAEPLTDLFRKTMELIQRHANDAAALNILFGVLLLICKLFYSLNFQDIPEFFEDNMKT 234 (960)
T ss_pred HhcCcccccHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhcccchHHHHhhHHH
Confidence 76543321 1112 12222222 1111 11222 1111222222233333223345556666666
Q ss_pred HHHHHHHHHhCCC-------------hHHHHHHHHHHHHHHccccHHHHHhHHHHHHHHHHHhcCCC---cchHHHHHHH
Q 001487 232 MMRTLTESLNNGN-------------EATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAES---LEEGTRHLAI 295 (1069)
Q Consensus 232 ~l~~l~~~l~~~~-------------~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~---~~~~~r~~a~ 295 (1069)
.+..+.+.+..+. ...+...|+.+.-.+..+.+.|.+++++++...+..+..-. .-+.....|+
T Consensus 235 wM~~F~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY~~kYeEef~~fl~~fv~~~W~LL~~~s~~~kyD~Lvs~Al 314 (960)
T KOG1992|consen 235 WMGAFHKLLTYDNPLLESDEEEATVLDKLKAQICEIFNLYATKYEEEFQPFLPDFVTATWNLLVSTSPDTKYDYLVSKAL 314 (960)
T ss_pred HHHHHHHHHhccCcccccCcccccHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHhcCCCccHHHHHHHHH
Confidence 6666665554211 13566788999888899999999999999988777653322 2345677899
Q ss_pred HHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhc-----CCCCCcccccC-CC-----CCccccCCcchhhHHHHHHH
Q 001487 296 EFVITLAEARERAPGMMRKLPQFINRLFAILMSMLL-----DIEDDPLWHSA-ET-----EDEDAGESSNYSVGQECLDR 364 (1069)
Q Consensus 296 ~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~-----~~~~~~~~~~~-~~-----e~ed~~~~~~~~~a~~~l~~ 364 (1069)
+|+..+++...+. +.+. . ++++..+.+... -..+|++..++ +. |-|..|.++.++.|.+.+..
T Consensus 315 ~FLt~V~~r~~y~-~~F~-~----~~vl~~i~e~VvlpN~~lR~eDeElFED~pleYiRRDlEGsDvdTRRR~a~dlvrg 388 (960)
T KOG1992|consen 315 QFLTSVSRRPHYA-ELFE-G----ENVLAQICEKVVLPNLILREEDEELFEDNPLEYIRRDLEGSDVDTRRRAAIDLVRG 388 (960)
T ss_pred HHHHHHHhhhhhH-hhhc-c----hHHHHHHHHhhcccccccchhhHHHhccCHHHHHHHhcccCCcchhHHHHHHHHHH
Confidence 9999998843221 1111 1 223333333221 11122222211 10 11222344567889999999
Q ss_pred HHHHcCCccchHHHHHHHHHhhc------CCChHHHHHHHHHHHHHHhhcHH---------HH---HHhH-HHHHHHHHh
Q 001487 365 LAIALGGNTIVPVASEQLPAYLA------APEWQKHHAALIALAQIAEGCAK---------VM---VKNL-EQVLSMVLN 425 (1069)
Q Consensus 365 l~~~~~~~~~~~~l~~~l~~~l~------~~~~~~r~aal~~l~~l~~~~~~---------~~---~~~~-~~i~~~l~~ 425 (1069)
++..+. ..+.+.+...++..+. +.||+.++.++..+.+++..... .+ ..++ ..++|-+..
T Consensus 389 L~~~fe-~~vt~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s 467 (960)
T KOG1992|consen 389 LCKNFE-GQVTGVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFFANQILPDLLS 467 (960)
T ss_pred HHHHhc-chhHHHHHHHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeeccccccHHHHHHHHhhHHhcc
Confidence 999884 5666766666666665 56899999999999888754221 11 1111 233444433
Q ss_pred hCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcC--------Ccccc
Q 001487 426 SFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENC--------TPEIL 497 (1069)
Q Consensus 426 ~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~--------~~~~~ 497 (1069)
.=..++|.++..+.+.+-.+-..++ ..++-.++|.+...+.. +...|...|..++..+.... +++.+
T Consensus 468 ~~vn~~pilka~aIKy~~~FR~ql~----~~~lm~~~p~li~~L~a-~s~vvhsYAA~aiEkil~vre~~~~~if~~~~i 542 (960)
T KOG1992|consen 468 PNVNEFPILKADAIKYIYTFRNQLG----KEHLMALLPRLIRFLEA-ESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDI 542 (960)
T ss_pred CccccccchhhcccceeeeecccCC----hHHHHHHHHHHHHhccC-cchHHHHHHHHHHHhccccccCccccccchhhc
Confidence 3335678888888876655544444 46678899999999998 78889999999999876543 33567
Q ss_pred cCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhHhhhHhhHhhhhHHHHHHHhhc-cCccccchhhHHHHHHHHHH
Q 001487 498 TPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNA-TDKSNRMLRAKSMECISLVG 576 (1069)
Q Consensus 498 ~~~l~~i~~~l~~~l~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~-~~~~~~~lr~~a~~~l~~l~ 576 (1069)
.||...++..+++.+..+...--+..+.++-.+.....+...|+.+.+++.|.+++... .++.....-...+|+++.+.
T Consensus 543 ap~~~~ll~nLf~a~s~p~~~EneylmKaImRii~i~~~~i~p~~~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li 622 (960)
T KOG1992|consen 543 APFVEILLTNLFKALSLPGKAENEYLMKAIMRIISILQSAIIPHAPELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLI 622 (960)
T ss_pred chHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHhCHHhhhhhhhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHH
Confidence 78888999999988887766666778889999998888888899999888888876552 12223334555788998888
Q ss_pred HhhChhh---hhhhHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHHHhcCCcccchhhhhHHHHHhcccCCCccccC
Q 001487 577 MAVGKDK---FRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITS 653 (1069)
Q Consensus 577 ~~~~~~~---~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~ 653 (1069)
+..++.. ...+...+++.+..+...++ ....+|++..++.+....+..+.+....++|.+++
T Consensus 623 ~~t~~~~~~~vs~~e~aL~p~fq~Il~eDI---~EfiPYvfQlla~lve~~~~~ip~~~~~l~~~lLs------------ 687 (960)
T KOG1992|consen 623 RKTCKANPSAVSSLEEALFPVFQTILSEDI---QEFIPYVFQLLAVLVEHSSGTIPDSYSPLFPPLLS------------ 687 (960)
T ss_pred HHHhccCchHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhcC------------
Confidence 8765332 44444455544444222111 12567777777877777666444333334444332
Q ss_pred CCCccccccCCCcccchhhcCCceeeeccchHHHHHHHHHHHHHHHHHhhhccc--ccHHHHHHHHhhccCCcCChHHHH
Q 001487 654 ADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFF--PWIDQVAPTLVPLLKFYFHEEVRK 731 (1069)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~a~~~l~~l~~~~~~~~~--p~~~~~~~~l~~~l~~~~~~~ir~ 731 (1069)
+.-|+. ++. --+..+.+..+.+..+..+. ..+..++..+-+++....++ .
T Consensus 688 -----------p~lW~r-----------~gN---ipalvrLl~aflk~g~~~~~~~~~l~~iLGifqkLiaSka~D---h 739 (960)
T KOG1992|consen 688 -----------PNLWKR-----------SGN---IPALVRLLQAFLKTGSQIVEAADKLSGILGIFQKLIASKAND---H 739 (960)
T ss_pred -----------HHHHhh-----------cCC---cHHHHHHHHHHHhcCchhhcccccchhHHHHHHHHhcCcccc---h
Confidence 112320 000 01234556666655444444 34556666666665532221 3
Q ss_pred HHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHccCCcHH
Q 001487 732 AAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTE 783 (1069)
Q Consensus 732 ~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 783 (1069)
.+...|.+++... ++....+++..+...+++.+.+.+-+.
T Consensus 740 ~GF~LLn~i~~~~------------~~~~~~py~k~i~~llf~RlqnskT~k 779 (960)
T KOG1992|consen 740 HGFYLLNTIIESI------------PPNELAPYMKQIFGLLFQRLQNSKTEK 779 (960)
T ss_pred hHHHHHHHHHhcC------------CHhhhhHHHHHHHHHHHHHHhccCcHH
Confidence 3445555554432 333455677777777777776644333
No 12
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.7e-23 Score=223.89 Aligned_cols=517 Identities=14% Similarity=0.209 Sum_probs=327.7
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc-CCCHHHHHHHHHHHHhhcccCCCCccc-----CCC
Q 001487 24 FETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDDSFLWP-----RLS 97 (1069)
Q Consensus 24 l~~ll~~~~s~d~~~r~~A~~~L~~~~~~~p~~~~~~L~~il~~-~~~~~~R~~a~i~L~~~i~~~~~~~w~-----~l~ 97 (1069)
+.++|+...|||..+++-||++|+++++ +|++| +.|..+..+ +.+..+|-+|++.+||-|.+. |. .++
T Consensus 2 vvq~Lq~Ats~d~~v~k~AE~qLr~WEt-qPGF~-~~L~sI~l~~t~dv~vRWmAviyfKNgIdry----WR~~~~~sl~ 75 (978)
T KOG1993|consen 2 VVQVLQQATSQDHIVVKPAEAQLRQWET-QPGFF-SKLYSIFLSKTNDVSVRWMAVIYFKNGIDRY----WRRNTKMSLP 75 (978)
T ss_pred HHHHHHHhcCCCcccchhHHHHHHhhcc-CCcHH-HHHHHHHhccccceeeeeehhhhHhcchhHH----hhcCCcccCC
Confidence 4678999999999999999999999999 79876 888888876 667899999999999999997 75 489
Q ss_pred HHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCC----ChhHHHHHHHHHHHhhhh
Q 001487 98 LHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSD----SVKLQESAFLIFAQLSQY 173 (1069)
Q Consensus 98 ~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~~~~w~~ll~~l~~~~~~~----~~~~r~~al~~l~~l~~~ 173 (1069)
+|.|..||..++.... |+++.+..+.|.++++||+.++| ..||+++|.+.+.+++. |.......+..+..+.+.
T Consensus 76 ~EEK~~iR~~Ll~~~~-E~~nQlaiQ~AvlisrIARlDyP-reWP~Lf~~L~~~Lq~~~~~gD~~~~~RiLi~l~~ilK~ 153 (978)
T KOG1993|consen 76 PEEKDFIRCNLLLHSD-EENNQLAIQNAVLISRIARLDYP-REWPDLFPDLLGQLQSSLGTGDSLVQHRILITLHHILKA 153 (978)
T ss_pred HHHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHhcCCC-ccchhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence 9999999999999988 57899999999999999999999 89999999999998876 777888888889888876
Q ss_pred hhhh--------cchhHHHHHHHHHHhh------------cCCC------ChHHHHHHHHHHHHHHHh-hCCcchHhHHH
Q 001487 174 IGDT--------LTPHLKHLHAVFLNCL------------TNSN------NPDVKIAALNAVINFIQC-LTSSADRDRFQ 226 (1069)
Q Consensus 174 ~~~~--------~~~~~~~l~~~l~~~l------------~~~~------~~~vr~~a~~~l~~l~~~-~~~~~~~~~~~ 226 (1069)
.+.. +.+..+.+++.+...+ ++.. .-++...+++++..++.+ +.++...+ +.
T Consensus 154 Lat~RL~a~rk~F~el~~~I~~~l~~~l~s~lt~~~lq~~ss~~ea~~LsalQ~s~~~lk~lRrlvv~G~~~P~kse-~~ 232 (978)
T KOG1993|consen 154 LATKRLLADRKAFYELAPEILTILAPILWSSLTMMFLQSVSSIKEATLLSALQRSYLTLKVLRRLVVFGFQNPSKSE-FF 232 (978)
T ss_pred HHHhHHhhhhHHHHHHhHHHHHHHHHHHhcchHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhccCCcchhh-HH
Confidence 5432 2223344444222211 1110 112233456666666544 22222222 33
Q ss_pred hhHHHHHHH----HHHHHhCCCh----HHHHHH----HHHHHHHHccccHHHHH--hHHHHHHHHHHHhcCC--------
Q 001487 227 DLLPLMMRT----LTESLNNGNE----ATAQEA----LELLIELAGTEPRFLRR--QLVDVVGSMLQIAEAE-------- 284 (1069)
Q Consensus 227 ~~~~~~l~~----l~~~l~~~~~----~~~~~~----~~~l~~l~~~~~~~~~~--~~~~l~~~l~~~~~~~-------- 284 (1069)
+-++.+++. +...+..+.. +..... ...+..+.+.+|-.|.. -.+..+++.+....++
T Consensus 233 eRl~~F~e~~~~~~~~~~s~~~~~vk~di~ek~~i~l~K~l~~l~~rhpfsF~~~~~~~~~l~f~~~yIf~~~~~l~~~~ 312 (978)
T KOG1993|consen 233 ERLLQFLELHQRKLLSSLSTGTQSVKSDILEKFCIKLMKVLAFLFNRHPFSFSFYSPCPVKLEFSIDYIFDEYDFLGQIS 312 (978)
T ss_pred HHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHHhcCCCcccccccccceeeehhhhhhhcccchhcccc
Confidence 334444443 1111111111 112222 33444555555544444 2333333333322111
Q ss_pred ---CcchHHHHHHHHHHHHHHHhhhccchhh---------------hc------chhhHHHHHHHHHHhh--cCCCCCcc
Q 001487 285 ---SLEEGTRHLAIEFVITLAEARERAPGMM---------------RK------LPQFINRLFAILMSML--LDIEDDPL 338 (1069)
Q Consensus 285 ---~~~~~~r~~a~~~l~~l~~~~~~~~~~~---------------~~------~~~~~~~l~~~l~~~l--~~~~~~~~ 338 (1069)
..-++...+++..+..+...+.+.+... .+ ..+-+..+...++... ...++-++
T Consensus 313 ~~~~~fe~f~iq~l~mlK~vm~~~~~~~s~~~k~~~d~~~~~~~~a~~i~~sFl~~~rIt~lcd~Lvt~YflLt~~eLEe 392 (978)
T KOG1993|consen 313 GHLSSFEEFFIQCLNMLKKVMIMKNYKFSLTIKEFCDTKDEHLETAQKIYNSFLTDNRITNLCDLLVTHYFLLTEEELEE 392 (978)
T ss_pred cccccHHHHHHHHHHHHHHHHHhhcccccccchhcccCccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 1123344555555554444322221100 00 0111222333333321 12334456
Q ss_pred cccCCCC---CccccCC--cchhhHHHHHHHHHHHcCCccchHHHHHHHHHhhcCC---------ChHHHHHHHHHHHHH
Q 001487 339 WHSAETE---DEDAGES--SNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAP---------EWQKHHAALIALAQI 404 (1069)
Q Consensus 339 ~~~~~~e---~ed~~~~--~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~---------~~~~r~aal~~l~~l 404 (1069)
|..+++. +++..+| ..+..|...+..+...++ +.+.|.++..+.+..+.+ ..-.+.|...++|.-
T Consensus 393 W~~dPE~~~~Eq~~~dwey~lRPCaE~L~~~lF~~ys-qllvP~~l~~i~~a~~~~~pt~~~~l~a~L~KDAiYaa~g~~ 471 (978)
T KOG1993|consen 393 WTQDPEGWVLEQSGGDWEYNLRPCAEKLYKDLFDAYS-QLLVPPVLDMIYSAQELQSPTVTEDLTALLLKDAIYAAFGLA 471 (978)
T ss_pred HhcChHHhhhhcccccceeccchhHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHH
Confidence 8877653 1222222 223457777777777776 677888888886654432 133556666667665
Q ss_pred HhhcHHHHHHhHHH-HHHHHHhhCCC---CChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHH
Q 001487 405 AEGCAKVMVKNLEQ-VLSMVLNSFRD---PHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAH 480 (1069)
Q Consensus 405 ~~~~~~~~~~~~~~-i~~~l~~~l~d---~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~ 480 (1069)
+....+.+ .++. +...++.-+.. ....+|+..+|.+|+.... .+..+..+-+...+++.+++..+..|+.+
T Consensus 472 a~~l~~~~--dF~~Wl~~~llpEl~~~~~~~RiiRRRVa~ilg~Wvsv---q~~~e~k~l~Y~a~lnLL~d~~D~vV~Lt 546 (978)
T KOG1993|consen 472 AYELSNIL--DFDKWLQEALLPELANDHGNSRIIRRRVAWILGQWVSV---QQKLELKPLLYCAFLNLLQDQNDLVVRLT 546 (978)
T ss_pred HHHHHhcC--CHHHHHHHhhCHHhhhcccchhHHHHHHHHHHhhhhhe---echHhHHHHHHHHHHHhcCccccceeehH
Confidence 54433211 1122 22233333332 2335688999999987653 22234566777888889998447889999
Q ss_pred HHHHHHHhhhc--CCcccccCchHHHHHHHHHHhhcC-ChhHHHHHHHHHHHHHHhhHhhhHhhHhhhhHHHHHHHhh
Q 001487 481 AASAVLNFSEN--CTPEILTPYLDGIVSKLLVLLQNG-KQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVN 555 (1069)
Q Consensus 481 a~~al~~l~~~--~~~~~~~~~l~~i~~~l~~~l~~~-~~~v~~~al~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~ 555 (1069)
+..++...++. +.++.+.||++.+...+++++... ..+.|-.++..++.++..+++.+.||...++..+-.++..
T Consensus 547 t~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LWe~ 624 (978)
T KOG1993|consen 547 TARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYASTIVQYLPLLWEE 624 (978)
T ss_pred HHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhh
Confidence 99999999985 456778899999999999988764 3567888999999999999999889988888888877765
No 13
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=99.96 E-value=2.6e-23 Score=226.26 Aligned_cols=597 Identities=17% Similarity=0.236 Sum_probs=380.9
Q ss_pred ChHHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc-CCCHHHHHHHHHHHHhhcccCCCCcccC---
Q 001487 20 DSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDDSFLWPR--- 95 (1069)
Q Consensus 20 ~~~~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~~p~~~~~~L~~il~~-~~~~~~R~~a~i~L~~~i~~~~~~~w~~--- 95 (1069)
+.+.+..+|.+++|+|+++|.+||.+|+++.. +++|..+|.++..+ ..+.+.||.|.+.|++++.++ |..
T Consensus 2 ~~~~ii~~L~~~ls~d~~vr~~AE~~l~qle~--~~~f~~aL~~va~~~~~sl~lRQ~A~v~L~~yie~h----W~~~~E 75 (1005)
T KOG2274|consen 2 VKQAIIELLSGSLSADQNVRSQAETQLKQLEL--TEGFGVALAEVAANKDASLPLRQIALVLLKRYIEKH----WSPNFE 75 (1005)
T ss_pred cHHHHHHHHHhhcCCChhHHHHHHHHHhcccc--chHHHHHHHHHHhCcccCchHHHHHHHHHHHHHHHh----CCChHh
Confidence 45688999999999999999999999999987 34578999999987 477899999999999999998 653
Q ss_pred -------CCHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCCChhHHHHHHHHHH
Q 001487 96 -------LSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFA 168 (1069)
Q Consensus 96 -------l~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~l~ 168 (1069)
-+.+.|..||..+++.+.+ ++..+|..++.+++.|+..++| +.||+++|.+..++.+++.+..++|+++|.
T Consensus 76 ~fr~~~~~~e~~K~~IRe~Ll~~l~~-sn~ki~~~vay~is~Ia~~D~P-d~WpElv~~i~~~l~~~n~n~i~~am~vL~ 153 (1005)
T KOG2274|consen 76 AFRYPLIVSEEVKALIREQLLNLLDD-SNSKIRSAVAYAISSIAAVDYP-DEWPELVPFILKLLSSGNENSIHGAMRVLA 153 (1005)
T ss_pred hccCCCcccHHHHHHHHHHHHhhhhc-cccccchHHHHHHHHHHhccCc-hhhHHHHHHHHHHHhccchhhhhhHHHHHH
Confidence 3567899999999999995 7999999999999999999999 899999999999999999999999999999
Q ss_pred Hhhhhhhhh-cc----hhHHHHHHHHHHhhcCCCChHHHHHHH--HHHHHHHHhhCCc------chHhHHHhhHHHHHHH
Q 001487 169 QLSQYIGDT-LT----PHLKHLHAVFLNCLTNSNNPDVKIAAL--NAVINFIQCLTSS------ADRDRFQDLLPLMMRT 235 (1069)
Q Consensus 169 ~l~~~~~~~-~~----~~~~~l~~~l~~~l~~~~~~~vr~~a~--~~l~~l~~~~~~~------~~~~~~~~~~~~~l~~ 235 (1069)
.+....... .. ..+..+.-.+ ...... +...|..++ +.+.++..-+..- .-...+...++.+++.
T Consensus 154 el~~ev~~ee~~~~~~~~l~~m~~~f-~~~~~~-s~~~~~~aa~~~lf~sc~~li~~~~e~~~~~~~~~~s~~l~~~~~~ 231 (1005)
T KOG2274|consen 154 ELSDEVDVEEMFFVGPVSLAEMYRIF-ALTIVY-SIITRLGAARGKLFTSCLTLITNVEEVWAEHVKVFLSQILNQFMDI 231 (1005)
T ss_pred HHHHHHHHHHHhcccccchhhhhhhh-hhcccc-chhHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998775321 11 1222222221 111222 334444443 3333333222110 0112234556666666
Q ss_pred HHHHHhCC---ChHHHHHHHHHHHHHHccccHHHHHhHHHHHHHHHHHhcC--------------------CCcch----
Q 001487 236 LTESLNNG---NEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEA--------------------ESLEE---- 288 (1069)
Q Consensus 236 l~~~l~~~---~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~~~~--------------------~~~~~---- 288 (1069)
+.+.++-+ +...+...+.++..+.++.|..+.+++...++..++.... .+.++
T Consensus 232 l~h~l~~~~g~~~~~~~eilk~~t~l~~nfp~~~~~~~~~~~~~vw~~~~~~~~~yir~~V~~~e~~~~~~~dsd~e~~~ 311 (1005)
T KOG2274|consen 232 LEHPLQRNDGSDFSLRMEILKCLTQLVENFPSLINPFMMGMFSIVWQTLEKILAVYVRESVNGTEDSYDARYDSDPEEKS 311 (1005)
T ss_pred HhhhhcccccchHHHHHHHHHHHHHHHHhhHHhhhHHHHhhhhHHHHHHHHHHhhhhhhhccccccCcccccCCchhhhC
Confidence 66655433 3456788899999999999988888877766665543210 01111
Q ss_pred --HHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCC-CcccccCCCC---CccccCCcchhhHHHHH
Q 001487 289 --GTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIED-DPLWHSAETE---DEDAGESSNYSVGQECL 362 (1069)
Q Consensus 289 --~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~-~~~~~~~~~e---~ed~~~~~~~~~a~~~l 362 (1069)
......++|+..++..... .+.+..-+..+++.+..++.-.++ -..|..+... +||++ ...+......+
T Consensus 312 ~~~l~i~i~eF~s~i~t~~~~----~~ti~~~l~~lI~~~v~y~Qlseeqie~w~sD~~~fV~dEd~~-~~~~~~~rd~~ 386 (1005)
T KOG2274|consen 312 VETLVIQIVEFLSTIVTNRFL----SKTIKKNLPELIYQLVAYLQLSEEQIEVWTSDVNQFVADEDDG-YTARISVRDLL 386 (1005)
T ss_pred hHHhhhhHHHHHHHHHHHHHH----HHHhhhhhHHHHHHHHHHHHhhHHHHHHHhccHHHhhccCCCC-chhhhhHHHHH
Confidence 1234566777777764211 111222334455555555443322 1236544321 22222 22333344455
Q ss_pred HHHHHHcCCccchHHHHHH----HHH-----hhcC-CChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCC-CCC
Q 001487 363 DRLAIALGGNTIVPVASEQ----LPA-----YLAA-PEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFR-DPH 431 (1069)
Q Consensus 363 ~~l~~~~~~~~~~~~l~~~----l~~-----~l~~-~~~~~r~aal~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~-d~~ 431 (1069)
..+...+|...+.+ +... +.. .++. ..|+...+.+.+......+ +.....+..+...+...+. ...
T Consensus 387 ~~v~~~f~~~~i~~-i~~a~~~~~~es~at~~~~~~~~wk~qea~l~a~~~~~~~--~~~dd~l~~l~~~~~~~l~~~e~ 463 (1005)
T KOG2274|consen 387 LEVITTFGNEGINP-IQDAAGRHFQESQATYLFNNESWWKIQEALLVAAESVRID--DANDDKLIELTIMIDNGLVYQES 463 (1005)
T ss_pred HHHHHhccchhhhH-HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcccC--cchHHHHHHHHHHHHhhcccccC
Confidence 55555565333322 2222 221 1222 3577777777776655532 1223445555555555554 456
Q ss_pred hhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHH
Q 001487 432 PRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVL 511 (1069)
Q Consensus 432 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~i~~~l~~~ 511 (1069)
|..-..+.++++.++...... .+....++...++.+.-...+.++.+|+.++..++ +...+.+.+|.++..+.++
T Consensus 464 P~Ll~Ra~~~i~~fs~~~~~~--~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~---~~~vl~~~~p~ild~L~ql 538 (1005)
T KOG2274|consen 464 PFLLLRAFLTISKFSSSTVIN--PQLLQHFLNATVNALTMDVPPPVKISAVRAFCGYC---KVKVLLSLQPMILDGLLQL 538 (1005)
T ss_pred HHHHHHHHHHHHHHHhhhccc--hhHHHHHHHHHHHhhccCCCCchhHHHHHHHHhcc---CceeccccchHHHHHHHHH
Confidence 776679999999888764322 24566677776666654356677888887766666 6677889999999999999
Q ss_pred hhcCChhHHHHHHHHHHHHHHhhHhhhHhhHhhhhHHHHHHHhhccCccccchhhHHHHHHHHHHHhhChhhhhhhHHHH
Q 001487 512 LQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQV 591 (1069)
Q Consensus 512 l~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i 591 (1069)
....+.++....+++++.++..-++.-...-+.+.|.+..++.+..++. .+-..+.+++-.+.... ....|+...+
T Consensus 539 as~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP--~V~~~~qd~f~el~q~~--~~~g~m~e~~ 614 (1005)
T KOG2274|consen 539 ASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDP--QVASLAQDLFEELLQIA--ANYGPMQERL 614 (1005)
T ss_pred cccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCc--hHHHHHHHHHHHHHHHH--HhhcchHHHH
Confidence 9999999999999999998876554333455678898888887754432 34555666666665532 4566777777
Q ss_pred HHHHHHHhcCCCC-CCCchhhHHHHHHHHHHHHhcCCccc-chhhhhHHHHHhc
Q 001487 592 MEVLMSLQGSQME-TDDPTTSYMLQAWARLCKCLGQDFLP-YMSVVMPPLLQSA 643 (1069)
Q Consensus 592 ~~~l~~l~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~-~l~~i~~~ll~~~ 643 (1069)
++.++...+.+.+ ........++..+..+.+..++.+.. .+....|.+.+..
T Consensus 615 iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~t 668 (1005)
T KOG2274|consen 615 IPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKIT 668 (1005)
T ss_pred HHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhhe
Confidence 8777774432211 11224445556666666665554332 2334455555554
No 14
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.93 E-value=1.8e-20 Score=198.62 Aligned_cols=675 Identities=16% Similarity=0.209 Sum_probs=423.8
Q ss_pred HHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhCCcchHhHHHhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHccccH
Q 001487 185 LHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPR 264 (1069)
Q Consensus 185 l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~ 264 (1069)
++..++. .++. .+..|+++++.|..=...+. ....|..++|.+++.-. +...|...+..+..++.....
T Consensus 365 i~~llLk-vKNG-~ppmRk~~LR~ltdkar~~g---a~~lfnqiLpllMs~tL------eDqerhllVkvidriLyklDd 433 (1172)
T KOG0213|consen 365 IMRLLLK-VKNG-TPPMRKSALRILTDKARNFG---AGPLFNQILPLLMSPTL------EDQERHLLVKVIDRILYKLDD 433 (1172)
T ss_pred HHHHHHh-hcCC-CchhHHHHHHHHHHHHHhhc---cHHHHHHHHHHHcCccc------cchhhhhHHHHHHHHHHhhcc
Confidence 4444443 3444 78899999998887666542 22344555554443211 334567777777777766666
Q ss_pred HHHHhHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCC
Q 001487 265 FLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAET 344 (1069)
Q Consensus 265 ~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~ 344 (1069)
...||+..|+-.+-..+- +.+-..|...-+.+..++.. .+ +. ..+ ..|. ++ +
T Consensus 434 lvrpYVhkILvVieplli--ded~yar~egreIisnLaka----aG----la----~mi----stmr-pD----i----- 485 (1172)
T KOG0213|consen 434 LVRPYVHKILVVIEPLLI--DEDYYARVEGREIISNLAKA----AG----LA----TMI----STMR-PD----I----- 485 (1172)
T ss_pred cchhceeeeEEEeeccee--cchHHHhhchHHHHHHHHHH----hh----hH----HHH----Hhhc-CC----c-----
Confidence 667776655432222221 22334555666677777762 11 11 111 1111 10 0
Q ss_pred CCccccCCcchhhHHHHHHHHHHHcCCccchHHHHHHHHHhhcCC-ChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHH
Q 001487 345 EDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAP-EWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMV 423 (1069)
Q Consensus 345 e~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~-~~~~r~aal~~l~~l~~~~~~~~~~~~~~i~~~l 423 (1069)
|..+.-.++....++..++..+| .|.++|++.....|. +|+.|+.++.+..+|+.-.+-.+.+|+..++..+
T Consensus 486 ---dn~deYVRnttarafavvasalg----ip~llpfLkavc~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii 558 (1172)
T KOG0213|consen 486 ---DNKDEYVRNTTARAFAVVASALG----IPALLPFLKAVCGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKII 558 (1172)
T ss_pred ---ccccHHHHHHHHHHHHHHHHHhC----cHHHHHHHHHHhccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHH
Confidence 00111234567778888888887 478889999988886 9999999999999999877777889999999999
Q ss_pred HhhCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHH
Q 001487 424 LNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDG 503 (1069)
Q Consensus 424 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~ 503 (1069)
-.++.|.+..||..++.+++.+++...|-- ...++.++..|.+.... .....-.+-..|++.++-..+.+.-.-|-..
T Consensus 559 ~~gl~De~qkVR~itAlalsalaeaa~Pyg-ie~fDsVlkpLwkgir~-hrgk~laafLkAigyliplmd~eya~yyTre 636 (1172)
T KOG0213|consen 559 EHGLKDEQQKVRTITALALSALAEAATPYG-IEQFDSVLKPLWKGIRQ-HRGKELAAFLKAIGYLIPLMDAEYASYYTRE 636 (1172)
T ss_pred HHhhcccchhhhhHHHHHHHHHHHhcCCcc-hHHHHHHHHHHHHHHHH-ccChHHHHHHHHHhhccccccHHHHHHhHHH
Confidence 999999999999999999999999876644 46688888888888876 3333445556777777776665543345567
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHHHHHHHhhHhhhHhhHhhhhHHHH-HHHhhccC------------------------
Q 001487 504 IVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLK-AILVNATD------------------------ 558 (1069)
Q Consensus 504 i~~~l~~~l~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~i~~~l~-~~l~~~~~------------------------ 558 (1069)
++-.+..-+++++.+.+...+..+..++...|-+-.=....++|.++ ..+.....
T Consensus 637 vmlil~rEf~sPDeemkkivLKVv~qcc~t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~~~ 716 (1172)
T KOG0213|consen 637 VMLILIREFGSPDEEMKKIVLKVVKQCCATDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVGSDP 716 (1172)
T ss_pred HHHHHHHhhCCChHHHHHHHHHHHHHHhcccCCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHHhCchH
Confidence 88888888999999999999999999987765321101123333333 22222100
Q ss_pred ----------ccccchhhHHHHHHHHHHHhhChhhhhhh-HHHHHHHHHH-HhcCCCCCCCchhhHHHHHHHHHHHHhcC
Q 001487 559 ----------KSNRMLRAKSMECISLVGMAVGKDKFRDD-AKQVMEVLMS-LQGSQMETDDPTTSYMLQAWARLCKCLGQ 626 (1069)
Q Consensus 559 ----------~~~~~lr~~a~~~l~~l~~~~~~~~~~~~-~~~i~~~l~~-l~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 626 (1069)
++....|.-+.+++..+...+|...|..- .+.++..++. ++.+. .--..++.+|+.+++.+|.
T Consensus 717 ~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqt-----t~d~vml~gfg~V~~~lg~ 791 (1172)
T KOG0213|consen 717 IVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQT-----TEDSVMLLGFGTVVNALGG 791 (1172)
T ss_pred HHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcc-----cchhhhhhhHHHHHHHHhh
Confidence 11112233333333333333332222211 1222332222 22221 1123566789999999999
Q ss_pred CcccchhhhhHHHHHhcccCCCccccCCCCccccccCCCcccchhhcCCceeeeccchHHHHHHHHHHHHHHHHHhhhc-
Q 001487 627 DFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEG- 705 (1069)
Q Consensus 627 ~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~a~~~l~~l~~~~~~~- 705 (1069)
...||++.++..++..++.++. ..|+-|..+++.++..++..
T Consensus 792 r~kpylpqi~stiL~rLnnksa-------------------------------------~vRqqaadlis~la~Vlktc~ 834 (1172)
T KOG0213|consen 792 RVKPYLPQICSTILWRLNNKSA-------------------------------------KVRQQAADLISSLAKVLKTCG 834 (1172)
T ss_pred ccccchHHHHHHHHHHhcCCCh-------------------------------------hHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999976432 23566777777776654332
Q ss_pred ---ccccHHHHHHHHhhccCCcCChHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHccCCcH
Q 001487 706 ---FFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDT 782 (1069)
Q Consensus 706 ---~~p~~~~~~~~l~~~l~~~~~~~ir~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~ 782 (1069)
+..|+.-+ +...+... ++++--....++..+++.... .| ..+.+..++|.|..++++. ..
T Consensus 835 ee~~m~~lGvv---LyEylgee-ypEvLgsILgAikaI~nvigm--~k----------m~pPi~dllPrltPILknr-he 897 (1172)
T KOG0213|consen 835 EEKLMGHLGVV---LYEYLGEE-YPEVLGSILGAIKAIVNVIGM--TK----------MTPPIKDLLPRLTPILKNR-HE 897 (1172)
T ss_pred HHHHHHHhhHH---HHHhcCcc-cHHHHHHHHHHHHHHHHhccc--cc----------cCCChhhhcccchHhhhhh-HH
Confidence 33344332 44555544 677767777777766654321 11 2334456777777777653 23
Q ss_pred HHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCCCChHhhhHhhhhhhhHHHHHHHHH
Q 001487 783 EICASMLDSLNECIQISGP-LLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVFDQVG 861 (1069)
Q Consensus 783 ~v~~~~l~~l~~~i~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~~~~~~~~~~~~ 861 (1069)
.+.... ..+-..|..-|+ ..+......++-.++.+|+. ....++.++.
T Consensus 898 KVqen~-IdLvg~IadrgpE~v~aREWMRIcfeLlelLka------------------------------hkK~iRRaa~ 946 (1172)
T KOG0213|consen 898 KVQENC-IDLVGTIADRGPEYVSAREWMRICFELLELLKA------------------------------HKKEIRRAAV 946 (1172)
T ss_pred HHHHHH-HHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHH------------------------------HHHHHHHHHH
Confidence 444333 333334444444 24444333444444444443 2346777888
Q ss_pred HHHHHHHHHhhhchhhhHHHHHhhhhhhhcCCCCHHHHHHH---HHHHHHHHhHhhhhhhhhhHhHHHHHHhhccCCChh
Q 001487 862 EILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKTAEERRIA---ICIFDDVAEQCREAALKYYETYLPFLLEACNDENQD 938 (1069)
Q Consensus 862 ~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~r~~a---~~~l~~l~~~~~~~~~~~~~~l~~~ll~~l~~~~~~ 938 (1069)
..+|.+++..|+.- ++..+++.|+ ...|+.- --.|+-+.+.|+.. .++|.++.--+.++..
T Consensus 947 nTfG~IakaIGPqd------VLatLlnnLk----vqeRq~RvcTtvaIaIVaE~c~pF------tVLPalmneYrtPe~n 1010 (1172)
T KOG0213|consen 947 NTFGYIAKAIGPQD------VLATLLNNLK----VQERQNRVCTTVAIAIVAETCGPF------TVLPALMNEYRTPEAN 1010 (1172)
T ss_pred hhhhHHHHhcCHHH------HHHHHHhcch----HHHHHhchhhhhhhhhhhhhcCch------hhhHHHHhhccCchhH
Confidence 89999999888542 3344444442 2234332 23466666777765 5789999988999999
Q ss_pred HHHhhhHHHHHHHhhcCCCchHHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHHHHHhhcCCCC------C-HhhHH
Q 001487 939 VRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQFHRDSI------D-AAQVV 1011 (1069)
Q Consensus 939 vr~~a~~~lg~l~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~------~-~~~~~ 1011 (1069)
|.+....++..+.++.++.-..|+..+.+.|-..+.+. +..-|..++.++..+...++..- | ++-++
T Consensus 1011 VQnGVLkalsf~FeyigemskdYiyav~PlleDAlmDr------D~vhRqta~~~I~Hl~Lg~~g~g~eda~iHLLN~iW 1084 (1172)
T KOG0213|consen 1011 VQNGVLKALSFMFEYIGEMSKDYIYAVTPLLEDALMDR------DLVHRQTAMNVIKHLALGVPGTGCEDALIHLLNLIW 1084 (1172)
T ss_pred HHHhHHHHHHHHHHHHHHHhhhHHHHhhHHHHHhhccc------cHHHHHHHHHHHHHHhcCCCCcCcHHHHHHHHHHhh
Confidence 99999999999999999888889999999998888765 56788999999999988877653 3 34455
Q ss_pred HHHHhhCC
Q 001487 1012 PAWLNCLP 1019 (1069)
Q Consensus 1012 ~~~l~~lp 1019 (1069)
|.+|...|
T Consensus 1085 pNIle~sP 1092 (1172)
T KOG0213|consen 1085 PNILETSP 1092 (1172)
T ss_pred hhhcCCCh
Confidence 55554444
No 15
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.92 E-value=4.1e-18 Score=176.11 Aligned_cols=719 Identities=13% Similarity=0.151 Sum_probs=448.2
Q ss_pred chhhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcC--CChhHHHHHHHHHHHhhhhhhhh-----------cch-h
Q 001487 116 SAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSS--DSVKLQESAFLIFAQLSQYIGDT-----------LTP-H 181 (1069)
Q Consensus 116 ~~~~vr~~~~~~i~~i~~~~~~~~~w~~ll~~l~~~~~~--~~~~~r~~al~~l~~l~~~~~~~-----------~~~-~ 181 (1069)
+++.+|..+-.-+-.+.+ +.+..++..+.+.+-+ +++..|-.+-.+|..-...-.+. +.+ .
T Consensus 17 pD~n~rl~aE~ql~~l~~-----~dF~qf~~ll~qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~~~~qrW~~~~~E~ 91 (858)
T COG5215 17 PDPNARLRAEAQLLELQS-----GDFEQFISLLVQVLCDLNSNDQLRMVAGLILKNSLHANDPELQKGCSQRWLGMRHES 91 (858)
T ss_pred CCCCccccHHHHHHHhcc-----ccHHHHHHHHHHHHhccCCcHHHHHHHHHHHhhhhhcCCHHHHHHHHHhhccCCHHH
Confidence 567777666555555544 4556666666666643 34556665655555332211111 111 2
Q ss_pred HHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhCCcchHhHHHhhHHHHHHHHHHHHhCCCh-HHHHHHHHHHHHHHc
Q 001487 182 LKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNE-ATAQEALELLIELAG 260 (1069)
Q Consensus 182 ~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~-~~~~~~~~~l~~l~~ 260 (1069)
-+++-...++.|.++ .+..-..|.+.+..++..- .-...+|.++..+.....++.+ .....++..++..++
T Consensus 92 k~qvK~~al~aL~s~-epr~~~~Aaql~aaIA~~E-------lp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ce 163 (858)
T COG5215 92 KEQVKGMALRALKSP-EPRFCTMAAQLLAAIARME-------LPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCE 163 (858)
T ss_pred HHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHhh-------CccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhh
Confidence 345556777888887 8888888989888887652 1235678888888877665554 456677888888877
Q ss_pred cc-cHHHHHhHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCccc
Q 001487 261 TE-PRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLW 339 (1069)
Q Consensus 261 ~~-~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~ 339 (1069)
.. |+.+...-..++-.+.......+.+..+|..++.++..-+.. +...+ .+.
T Consensus 164 s~~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~f--------------v~~nf-------~~E------ 216 (858)
T COG5215 164 SEAPEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMF--------------VQGNF-------CYE------ 216 (858)
T ss_pred ccCHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHH--------------HHHhh-------cch------
Confidence 54 434443333333222222222356778898888877653221 01000 000
Q ss_pred ccCCCCCccccCCcchhhHHHHHHHHHHHcCCccchHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHH
Q 001487 340 HSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQV 419 (1069)
Q Consensus 340 ~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~i 419 (1069)
.-...+++...+.-++++....++++.+|..+..-..+.+..++++.
T Consensus 217 ---------------------------------~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~a 263 (858)
T COG5215 217 ---------------------------------EERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENA 263 (858)
T ss_pred ---------------------------------hhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00112333344555677888888999898888877667777787765
Q ss_pred H-HHHHhhCCCCChhHHHHHHHHHHHhHhhh-chhHHhhh---------------hhhhHHHHHhhccC------CCChh
Q 001487 420 L-SMVLNSFRDPHPRVRWAAINAIGQLSTDL-GPDLQNQF---------------HPQVLPALAGAMDD------FQNPR 476 (1069)
Q Consensus 420 ~-~~l~~~l~d~~~~vr~~a~~~l~~l~~~~-~~~~~~~~---------------~~~il~~l~~~l~~------~~~~~ 476 (1069)
+ ......++++|..|...|....+.+++.- ...+...| ...++|.+++.|.. ..++.
T Consensus 264 L~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn 343 (858)
T COG5215 264 LAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWN 343 (858)
T ss_pred HHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccc
Confidence 4 45556788999999988888887776532 11111112 34588888887743 13677
Q ss_pred HHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhHh-hhHhhHhhhhHHHHHHHhh
Q 001487 477 VQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQE-HFQKYYDAVMPFLKAILVN 555 (1069)
Q Consensus 477 v~~~a~~al~~l~~~~~~~~~~~~l~~i~~~l~~~l~~~~~~v~~~al~~l~~l~~~~~~-~~~~~~~~i~~~l~~~l~~ 555 (1069)
+..+|..+|.-+.+..+...+ .+++..+-+.++++++.-|+.+.-++|++-..-.+ -..+|.++.+|.+.....
T Consensus 344 ~smaA~sCLqlfaq~~gd~i~----~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~- 418 (858)
T COG5215 344 PSMAASSCLQLFAQLKGDKIM----RPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMS- 418 (858)
T ss_pred hhhhHHHHHHHHHHHhhhHhH----HHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcc-
Confidence 888899999999988876544 44777778888999999999999999999875444 356788899998877643
Q ss_pred ccCccccchhhHHHHHHHHHHHhhChhhhhhh--HHHHHH-HHHHHhcCCCCCCCchhhHHHHHHHHHHHHhc-------
Q 001487 556 ATDKSNRMLRAKSMECISLVGMAVGKDKFRDD--AKQVME-VLMSLQGSQMETDDPTTSYMLQAWARLCKCLG------- 625 (1069)
Q Consensus 556 ~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~--~~~i~~-~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~------- 625 (1069)
+...-++..+..|++.++..+. +.+.|. +..... .+..+.++. .+...+...+.+++..+.
T Consensus 419 ---D~~l~vk~ttAwc~g~iad~va-~~i~p~~Hl~~~vsa~liGl~D~p-----~~~~ncsw~~~nlv~h~a~a~~~~~ 489 (858)
T COG5215 419 ---DSCLWVKSTTAWCFGAIADHVA-MIISPCGHLVLEVSASLIGLMDCP-----FRSINCSWRKENLVDHIAKAVREVE 489 (858)
T ss_pred ---cceeehhhHHHHHHHHHHHHHH-HhcCccccccHHHHHHHhhhhccc-----hHHhhhHHHHHhHHHhhhhhhcccc
Confidence 2334467888899999998876 444443 222222 222333321 111122223334444332
Q ss_pred CCcccchhhhhHHHHHhcccCCCccccCCCCccccccCCCcccchhhcCCceeeeccchHHHHHHHHHHHHHHHHHhhhc
Q 001487 626 QDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEG 705 (1069)
Q Consensus 626 ~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~a~~~l~~l~~~~~~~ 705 (1069)
.-+.++.+.++..|++......+ + ...|.+++.+||.+...+++.
T Consensus 490 S~l~~fY~ai~~~Lv~~t~~~~N----------------e-------------------~n~R~s~fsaLgtli~~~~d~ 534 (858)
T COG5215 490 SFLAKFYLAILNALVKGTELALN----------------E-------------------SNLRVSLFSALGTLILICPDA 534 (858)
T ss_pred chhHHHHHHHHHHHHHHHHhhcc----------------c-------------------hhHHHHHHHHHHHHHhhcchh
Confidence 22556666666666665532110 0 123678899999999999888
Q ss_pred ccccHHHHHHHHhhccCCc--------------CChHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHH
Q 001487 706 FFPWIDQVAPTLVPLLKFY--------------FHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPA 771 (1069)
Q Consensus 706 ~~p~~~~~~~~l~~~l~~~--------------~~~~ir~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 771 (1069)
..|.+..+...+.+.++.. ..+++...-+..|..+++. .. + ..++.-+.++..
T Consensus 535 V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~-------~~---~---~ie~v~D~lm~L 601 (858)
T COG5215 535 VSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRT-------RR---R---DIEDVEDQLMEL 601 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHh-------cC---C---CcccHHHHHHHH
Confidence 8776666655555444321 0222222333332222221 11 1 123344455565
Q ss_pred HHHHHccCCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCCCChHhhhHhhhhhh
Q 001487 772 LVEALHKEPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIKEENE 851 (1069)
Q Consensus 772 l~~~~~~~~~~~v~~~~l~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~~ 851 (1069)
+++.+.+.+...+-..++.++..+...++ +..+.+.+++.+.+.+.+.+
T Consensus 602 f~r~les~~~t~~~~dV~~aIsal~~sl~-----e~Fe~y~~~fiPyl~~aln~-------------------------- 650 (858)
T COG5215 602 FIRILESTKPTTAFGDVYTAISALSTSLE-----ERFEQYASKFIPYLTRALNC-------------------------- 650 (858)
T ss_pred HHHHHhccCCchhhhHHHHHHHHHHHHHH-----HHHHHHHhhhhHHHHHHhcc--------------------------
Confidence 66666554323334455556655555544 46677888888888765532
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhchhhhHHHHHhhhhhhhcCCC-CHHHHHHHHHHHHHHHhHhhhhhhhhhHhHHHHHHh
Q 001487 852 QEEEVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDK-TAEERRIAICIFDDVAEQCREAALKYYETYLPFLLE 930 (1069)
Q Consensus 852 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~-~~~~r~~a~~~l~~l~~~~~~~~~~~~~~l~~~ll~ 930 (1069)
.+..+...+..++|.++..++.+|.+|.+.++..++.++.... ..+.|-..++++|++....|..+.+|++.++-.+..
T Consensus 651 ~d~~v~~~avglvgdlantl~~df~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga~F~~YL~~im~L~qq 730 (858)
T COG5215 651 TDRFVLNSAVGLVGDLANTLGTDFNIYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALAIGANFESYLDMIMMLFQQ 730 (858)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcChhhccccchHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 4456777888999999999999999999999999998884221 123455679999999999999999999988877665
Q ss_pred hc--cCCC-----hhHHHhh-------hHHHHHHHhhcCCCchHHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHHH
Q 001487 931 AC--NDEN-----QDVRQAA-------VYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGK 996 (1069)
Q Consensus 931 ~l--~~~~-----~~vr~~a-------~~~lg~l~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~l~~ 996 (1069)
.- +.++ .+.|.++ ..++|.-....++.+.||+-.+.+.+..+-.+|+.+ ....+.+.+.+|-
T Consensus 731 as~~~p~~~~~~~~dy~~~~~~~v~~ayVgI~~~~~nr~~~v~Pyv~sif~~i~~iaeDp~~s----e~~traalGLigD 806 (858)
T COG5215 731 ASELDPHSDEVYVDDYRKNAVQLVNCAYVGIGDSSKNRVRSVLPYVISIFHKIGMIAEDPNGS----EAHTRAALGLIGD 806 (858)
T ss_pred HhccCCCCCceeHHHHHHHHHHHHHHHHHHhhhhhhhhHHHhhhHHHHHHHHHHHhhcCCccc----hhHHHHHHHHHHH
Confidence 43 2211 1333333 335566555555678899999999997776666542 3444678899999
Q ss_pred HHhhcCCC
Q 001487 997 ICQFHRDS 1004 (1069)
Q Consensus 997 i~~~~~~~ 1004 (1069)
+...+|..
T Consensus 807 la~mfpkg 814 (858)
T COG5215 807 LAGMFPKG 814 (858)
T ss_pred HHHhCCCc
Confidence 99999875
No 16
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=8.2e-18 Score=179.44 Aligned_cols=512 Identities=15% Similarity=0.141 Sum_probs=319.9
Q ss_pred hHHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc-CCCHHHHHHHHHHHHhhcccCCCCcccCC---
Q 001487 21 SAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDDSFLWPRL--- 96 (1069)
Q Consensus 21 ~~~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~~p~~~~~~L~~il~~-~~~~~~R~~a~i~L~~~i~~~~~~~w~~l--- 96 (1069)
.+++.+.+.+.++.|.+.|..||..|+++.+ +|+ |+..+++++.+ ..++.+|+.|+++|||.|.+. |...
T Consensus 2 ~~ellqcf~qTldada~~rt~AE~~Lk~leK-qPg-Fv~all~i~s~de~~lnvklsAaIYfKNkI~rs----Wss~~d~ 75 (970)
T COG5656 2 REELLQCFLQTLDADAGKRTIAEAMLKDLEK-QPG-FVMALLHICSKDEGDLNVKLSAAIYFKNKIIRS----WSSKRDD 75 (970)
T ss_pred hHHHHHHHHHHhccCcchhhHHHHHHHHhhc-CCc-HHHHHHHHHhhccCCchhhHHHHHHHhhhhhhh----hhhcccC
Confidence 4678888999999999999999999999999 687 47999999987 578999999999999999998 8752
Q ss_pred --C----HHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCCChhHHHHHHHHHHHh
Q 001487 97 --S----LHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQL 170 (1069)
Q Consensus 97 --~----~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l 170 (1069)
+ ++.|+.+++.++..+.. .+...|...-.++..|.+.++|.+.|+ +.|...+.+.+++....-.++.++..+
T Consensus 76 ~i~~Dek~e~K~~lienil~v~l~-sp~~tr~~l~ail~~I~seD~ps~~wg-l~p~~~nll~s~ea~~vy~gLlcl~el 153 (970)
T COG5656 76 GIKADEKSEAKKYLIENILDVFLY-SPEVTRTALNAILVNIFSEDKPSDLWG-LFPKAANLLRSSEANHVYTGLLCLEEL 153 (970)
T ss_pred CCCCcccHHHHHHHHHHHHHHHhc-CCchHHHHHHHHHHHhccccCchhhcc-cchHHHHhhcccchhHHHHHHHHHHHH
Confidence 3 34444444444444443 355566666667777788899989999 999999999999999999999999999
Q ss_pred hhhhh-------hhcchhHHHHHHHHHHh---hcCCC---ChHHHHHHHHHHHHHHHh-hCCc-chHhHHHhhHHHHHHH
Q 001487 171 SQYIG-------DTLTPHLKHLHAVFLNC---LTNSN---NPDVKIAALNAVINFIQC-LTSS-ADRDRFQDLLPLMMRT 235 (1069)
Q Consensus 171 ~~~~~-------~~~~~~~~~l~~~l~~~---l~~~~---~~~vr~~a~~~l~~l~~~-~~~~-~~~~~~~~~~~~~l~~ 235 (1069)
++... ..+.+....+.|.+.+. +.+.+ +.++-...++.+...+.+ ++.. ...+.+..++...+..
T Consensus 154 fkayRwk~ndeq~di~~li~alfpile~~g~nl~s~~ny~s~e~l~LILk~fKsvcy~~LP~~lsa~e~f~sw~ql~l~i 233 (970)
T COG5656 154 FKAYRWKYNDEQVDILMLITALFPILEKVGGNLESQGNYGSVETLMLILKSFKSVCYYSLPDFLSAIETFSSWFQLSLRI 233 (970)
T ss_pred HHHHhhhccchHhhHHHHHHHhhHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHhhCCHHHccchhhHHHHHHHHHH
Confidence 97532 12334455556666543 22211 223333344444333322 1110 0223444555544444
Q ss_pred HHHHHh----CCChHHH---------HHHHHHHHHHHccccH--------HHHHhHHHHHHHHH----HHhc---CCC-c
Q 001487 236 LTESLN----NGNEATA---------QEALELLIELAGTEPR--------FLRRQLVDVVGSML----QIAE---AES-L 286 (1069)
Q Consensus 236 l~~~l~----~~~~~~~---------~~~~~~l~~l~~~~~~--------~~~~~~~~l~~~l~----~~~~---~~~-~ 286 (1069)
+..-+. +-++++| +.|+..+.++...+.+ .+......+++.++ +... +.. .
T Consensus 234 ~qkplp~evlsldpevRs~~~wvKckKWa~ynLyR~fqRy~k~s~~~~y~~f~~~f~t~vp~il~tffkqie~wgqgqLW 313 (970)
T COG5656 234 LQKPLPNEVLSLDPEVRSLSKWVKCKKWAAYNLYRSFQRYIKKSYKKSYLSFYITFMTRVPMILATFFKQIEEWGQGQLW 313 (970)
T ss_pred HcCCCCHHHhccChhhccccchhhhhHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCee
Confidence 432211 1244444 3344455555544422 11111222333333 2221 111 0
Q ss_pred chHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHH-HHHhhcCCCC-CcccccCCCCC----cc--ccCCcchhhH
Q 001487 287 EEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAI-LMSMLLDIED-DPLWHSAETED----ED--AGESSNYSVG 358 (1069)
Q Consensus 287 ~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~-l~~~l~~~~~-~~~~~~~~~e~----ed--~~~~~~~~~a 358 (1069)
-.+.....+.+....|.. ....++.+.|+++-++.. ++++++-.++ .+.|+.+++|- .| ++..++.-++
T Consensus 314 lsd~~LYfi~~Fve~cv~---~d~tw~l~ePhlq~ii~~vIfPllc~see~eElfEnDp~eyirry~df~d~g~spdlaa 390 (970)
T COG5656 314 LSDIELYFIDFFVELCVD---ADQTWRLMEPHLQYIISGVIFPLLCLSEEEEELFENDPDEYIRRYYDFFDNGLSPDLAA 390 (970)
T ss_pred cchHHHHHHHHHHHHHhh---hHhhHhhhccHHHHHHHhhhhhhcCCChhhHHHHhcCHHHHHHHhcchhcCCCChhHHH
Confidence 111223333333333331 112334455555554442 3444443333 23355444320 01 1222333344
Q ss_pred HHHHHHHHHHcCCccchHHHHHHHHHhhc-----C---CChHHHHHHHHHHHHHHh--hcHHHHHHhHH-HHHHHHHhhC
Q 001487 359 QECLDRLAIALGGNTIVPVASEQLPAYLA-----A---PEWQKHHAALIALAQIAE--GCAKVMVKNLE-QVLSMVLNSF 427 (1069)
Q Consensus 359 ~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-----~---~~~~~r~aal~~l~~l~~--~~~~~~~~~~~-~i~~~l~~~l 427 (1069)
..++-......+ +..+..+++++...++ + .+.+..++|+..++++.. ...+.....++ -+++.+.+.+
T Consensus 391 l~fl~~~~sKrk-e~TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f 469 (970)
T COG5656 391 LFFLIISKSKRK-EETFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAF 469 (970)
T ss_pred HHHHHHHhcccc-hhhhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhh
Confidence 455555544444 5666677777777663 1 357788999999999877 22223333343 3678888999
Q ss_pred CCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCC-cccccCchHHHHH
Q 001487 428 RDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCT-PEILTPYLDGIVS 506 (1069)
Q Consensus 428 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~-~~~~~~~l~~i~~ 506 (1069)
+++.--.|..||..++.+.+.++. .....++++...+++++ ++-.|+..|..|+..+..+.. ...+..+.+..|+
T Consensus 470 ~s~ygfL~Srace~is~~eeDfkd---~~ill~aye~t~ncl~n-n~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tme 545 (970)
T COG5656 470 RSNYGFLKSRACEFISTIEEDFKD---NGILLEAYENTHNCLKN-NHLPVMIEAALALQFFIFNEQSHEKFSAHVPETME 545 (970)
T ss_pred cCcccchHHHHHHHHHHHHHhccc---chHHHHHHHHHHHHHhc-CCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHH
Confidence 999999999999999999777765 24567888889999999 888999999999999886542 2346788999999
Q ss_pred HHHHHhhcCChhHHHHHHHHHHHHHHhhHhhhHhhHhhhhHHHHH
Q 001487 507 KLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKA 551 (1069)
Q Consensus 507 ~l~~~l~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~i~~~l~~ 551 (1069)
.++++-+..+.++ .-.++..++....+.+.||.++++..|.+
T Consensus 546 kLLsLSn~feiD~---LS~vMe~fVe~fseELspfa~eLa~~Lv~ 587 (970)
T COG5656 546 KLLSLSNTFEIDP---LSMVMESFVEYFSEELSPFAPELAGSLVR 587 (970)
T ss_pred HHHHhcccccchH---HHHHHHHHHHHhHHhhchhHHHHHHHHHH
Confidence 9999877766544 34556677778888888888877776665
No 17
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.89 E-value=9.6e-17 Score=170.82 Aligned_cols=680 Identities=16% Similarity=0.220 Sum_probs=417.6
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhhhc-CchHHHHHHHHHHcc-CCCHHHHHHHHHHHHhhcccCCCCc--c-----
Q 001487 23 PFETLISHLMSTSNEQRSEAELLFNLCKQQ-DPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDDSFL--W----- 93 (1069)
Q Consensus 23 ~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~-~p~~~~~~L~~il~~-~~~~~~R~~a~i~L~~~i~~~~~~~--w----- 93 (1069)
.+..+|-.+.++.+.-|+.|..+|..=... -++-....++-++-+ +-+.+-|++-.-.+.+++.+-+.-. +
T Consensus 364 ~i~~llLkvKNG~ppmRk~~LR~ltdkar~~ga~~lfnqiLpllMs~tLeDqerhllVkvidriLyklDdlvrpYVhkIL 443 (1172)
T KOG0213|consen 364 KIMRLLLKVKNGTPPMRKSALRILTDKARNFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKIL 443 (1172)
T ss_pred HHHHHHHhhcCCCchhHHHHHHHHHHHHHhhccHHHHHHHHHHHcCccccchhhhhHHHHHHHHHHhhcccchhceeeeE
Confidence 566678888889999999999988753331 122222334444444 5566778877776666665431000 0
Q ss_pred ---c--CCCHHHHHH-----HHHHHHH---------HHhh---cchhhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHh
Q 001487 94 ---P--RLSLHTQSS-----LKSMLLQ---------SIQL---ESAKSISKKLCDTVSELASNILPENGWPELLPFMFQC 151 (1069)
Q Consensus 94 ---~--~l~~~~~~~-----i~~~ll~---------~l~~---e~~~~vr~~~~~~i~~i~~~~~~~~~w~~ll~~l~~~ 151 (1069)
. .++++.... |...|-. .+.- ..++-+|+..+.+++.+++.. ..|.++|+|...
T Consensus 444 vViepllided~yar~egreIisnLakaaGla~mistmrpDidn~deYVRnttarafavvasal----gip~llpfLkav 519 (1172)
T KOG0213|consen 444 VVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNKDEYVRNTTARAFAVVASAL----GIPALLPFLKAV 519 (1172)
T ss_pred EEeecceecchHHHhhchHHHHHHHHHHhhhHHHHHhhcCCcccccHHHHHHHHHHHHHHHHHh----CcHHHHHHHHHH
Confidence 0 022222211 2221111 1111 136679999999999999974 469999999999
Q ss_pred hcCC-ChhHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhCCcchHhHHHhhHH
Q 001487 152 VSSD-SVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLP 230 (1069)
Q Consensus 152 ~~~~-~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~ 230 (1069)
+.|. +|..|+.++.+...|+...+....+++..++.++..++.|. +..||..+..++..+++.. .+...+.|.+.
T Consensus 520 c~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~gl~De-~qkVR~itAlalsalaeaa-~Pygie~fDsV-- 595 (1172)
T KOG0213|consen 520 CGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGLKDE-QQKVRTITALALSALAEAA-TPYGIEQFDSV-- 595 (1172)
T ss_pred hccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHhhccc-chhhhhHHHHHHHHHHHhc-CCcchHHHHHH--
Confidence 9887 89999999999999999999888899999999999999998 8999999999999998864 23334445544
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHHccccHHHHHhHH-HHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHhhhccc
Q 001487 231 LMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLV-DVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAP 309 (1069)
Q Consensus 231 ~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~ 309 (1069)
+..|++-+..........-+.+++.++-........|+. +++-.+.+-. ...+++.+...+..+..+|......|
T Consensus 596 --lkpLwkgir~hrgk~laafLkAigyliplmd~eya~yyTrevmlil~rEf--~sPDeemkkivLKVv~qcc~t~Gv~~ 671 (1172)
T KOG0213|consen 596 --LKPLWKGIRQHRGKELAAFLKAIGYLIPLMDAEYASYYTREVMLILIREF--GSPDEEMKKIVLKVVKQCCATDGVEP 671 (1172)
T ss_pred --HHHHHHHHHHccChHHHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhh--CCChHHHHHHHHHHHHHHhcccCCCH
Confidence 444443332222222333344444444322222233322 3333333323 33467777777888887777432222
Q ss_pred hhhhcchhhHHHHHHHHHHhhc-----------------------CCCCCcccccCCCCCccccCCcchhhHHHHHHHHH
Q 001487 310 GMMRKLPQFINRLFAILMSMLL-----------------------DIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLA 366 (1069)
Q Consensus 310 ~~~~~~~~~~~~l~~~l~~~l~-----------------------~~~~~~~~~~~~~e~ed~~~~~~~~~a~~~l~~l~ 366 (1069)
...+ ..++|..+...- +.-.++.....- ++.-++....++....+++.+.
T Consensus 672 ~y~r------~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~~~~v~R~v-~~lkde~e~yrkm~~etv~ri~ 744 (1172)
T KOG0213|consen 672 AYIR------FDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVGSDPIVSRVV-LDLKDEPEQYRKMVAETVSRIV 744 (1172)
T ss_pred HHHh------hhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHHhCchHHHHHHh-hhhccccHHHHHHHHHHHHHHH
Confidence 2111 223333332211 000000000000 0000111122345566667776
Q ss_pred HHcCCccch----HHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHH
Q 001487 367 IALGGNTIV----PVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAI 442 (1069)
Q Consensus 367 ~~~~~~~~~----~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~d~~~~vr~~a~~~l 442 (1069)
..+|...+- ..++.-+...++.+.-..- ..+..++.++......+.+|+++|+..++..|+++.+.||..|+..+
T Consensus 745 ~~lg~~diderleE~lidgil~Afqeqtt~d~-vml~gfg~V~~~lg~r~kpylpqi~stiL~rLnnksa~vRqqaadli 823 (1172)
T KOG0213|consen 745 GRLGAADIDERLEERLIDGILYAFQEQTTEDS-VMLLGFGTVVNALGGRVKPYLPQICSTILWRLNNKSAKVRQQAADLI 823 (1172)
T ss_pred hccccccccHHHHHHHHHHHHHHHHhcccchh-hhhhhHHHHHHHHhhccccchHHHHHHHHHHhcCCChhHHHHHHHHH
Confidence 666643332 2333333334443322222 45677888888777778899999999999999999999999999999
Q ss_pred HHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCChhHHHH
Q 001487 443 GQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEG 522 (1069)
Q Consensus 443 ~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~i~~~l~~~l~~~~~~v~~~ 522 (1069)
+.++..+...-....+..+=-.|...|.. ..++|-.....|+..++...+...+.|-...++|.|...+.+.+.+|++.
T Consensus 824 s~la~Vlktc~ee~~m~~lGvvLyEylge-eypEvLgsILgAikaI~nvigm~km~pPi~dllPrltPILknrheKVqen 902 (1172)
T KOG0213|consen 824 SSLAKVLKTCGEEKLMGHLGVVLYEYLGE-EYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQEN 902 (1172)
T ss_pred HHHHHHHHhccHHHHHHHhhHHHHHhcCc-ccHHHHHHHHHHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHH
Confidence 99988775432122334444456788888 88999999999999999888776678889999999999999999999999
Q ss_pred HHHHHHHHHHhhHhhhHh-hHhhhhHHHHHHHhhccCccccchhhHHHHHHHHHHHhhChhhhhhhHHHHHHHHHH-Hhc
Q 001487 523 ALTALASVADSSQEHFQK-YYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMS-LQG 600 (1069)
Q Consensus 523 al~~l~~l~~~~~~~~~~-~~~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~-l~~ 600 (1069)
.+..+|.++...++.... -.-.|.=-|.+.|+.. ...+|..|.+++|.+++++|++. ++..|++ +..
T Consensus 903 ~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkah----kK~iRRaa~nTfG~IakaIGPqd-------VLatLlnnLkv 971 (1172)
T KOG0213|consen 903 CIDLVGTIADRGPEYVSAREWMRICFELLELLKAH----KKEIRRAAVNTFGYIAKAIGPQD-------VLATLLNNLKV 971 (1172)
T ss_pred HHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhhhHHHHhcCHHH-------HHHHHHhcchH
Confidence 999999999887763321 1223333344444432 34588999999999999999764 3444443 221
Q ss_pred CCCCCCCchhhHHHHHHHHHHHHhcCCcccchhhhhHHHHHhcccCCCccccCCCCccccccCCCcccchhhcCCceeee
Q 001487 601 SQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGI 680 (1069)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 680 (1069)
+ ++..|-+..-+++-+++.+| || .++|.+++--.. |+ .+|
T Consensus 972 q----eRq~RvcTtvaIaIVaE~c~----pF--tVLPalmneYrt-Pe-----------------------------~nV 1011 (1172)
T KOG0213|consen 972 Q----ERQNRVCTTVAIAIVAETCG----PF--TVLPALMNEYRT-PE-----------------------------ANV 1011 (1172)
T ss_pred H----HHHhchhhhhhhhhhhhhcC----ch--hhhHHHHhhccC-ch-----------------------------hHH
Confidence 1 11122222224444555554 33 355655543321 11 112
Q ss_pred ccchHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHhhccCCcCChHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHH
Q 001487 681 KTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESY 760 (1069)
Q Consensus 681 ~~~~~~~k~~a~~~l~~l~~~~~~~~~p~~~~~~~~l~~~l~~~~~~~ir~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~ 760 (1069)
. ..-+++++.+.+..+..-..|+..+.|.+...+.|. +..-|+.|+.++.++...+. .....+.
T Consensus 1012 Q-------nGVLkalsf~FeyigemskdYiyav~PlleDAlmDr-D~vhRqta~~~I~Hl~Lg~~--------g~g~eda 1075 (1172)
T KOG0213|consen 1012 Q-------NGVLKALSFMFEYIGEMSKDYIYAVTPLLEDALMDR-DLVHRQTAMNVIKHLALGVP--------GTGCEDA 1075 (1172)
T ss_pred H-------HhHHHHHHHHHHHHHHHhhhHHHHhhHHHHHhhccc-cHHHHHHHHHHHHHHhcCCC--------CcCcHHH
Confidence 2 334566888888888878889999999988888864 67779999998888754221 1112334
Q ss_pred HHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHH
Q 001487 761 VKQLSDFIIPALVEALHKEPDTEICASMLDSLNEC 795 (1069)
Q Consensus 761 ~~~~~~~i~~~l~~~~~~~~~~~v~~~~l~~l~~~ 795 (1069)
+-.+++.+.|.+++ +.+.+..+...++..+
T Consensus 1076 ~iHLLN~iWpNIle-----~sPhviqa~~e~~eg~ 1105 (1172)
T KOG0213|consen 1076 LIHLLNLIWPNILE-----TSPHVIQAFDEAMEGL 1105 (1172)
T ss_pred HHHHHHHhhhhhcC-----CChHHHHHHHHHHHHH
Confidence 45566666665443 3456554444444433
No 18
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=4.1e-17 Score=174.36 Aligned_cols=598 Identities=14% Similarity=0.177 Sum_probs=352.6
Q ss_pred HHHHHHHHHhcCC--ChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc-CCCHHHHHHHHHHHHhhcccCCCCcccCCCH
Q 001487 22 APFETLISHLMST--SNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDDSFLWPRLSL 98 (1069)
Q Consensus 22 ~~l~~ll~~~~s~--d~~~r~~A~~~L~~~~~~~p~~~~~~L~~il~~-~~~~~~R~~a~i~L~~~i~~~~~~~w~~l~~ 98 (1069)
+.+++++..+..| |.+.|+||.+++++++. .|++| ..+.+++.. ..++.+|..+...|...++.. +...+.
T Consensus 3 ddiEqav~a~ndp~vdsa~KqqA~~y~~qiKs-Sp~aw-~Icie~l~~~ts~d~vkf~clqtL~e~vrek----yne~nl 76 (980)
T KOG2021|consen 3 DDIEQAVNAVNDPRVDSATKQQAIEYLNQIKS-SPNAW-EICIELLINETSNDLVKFYCLQTLIELVREK----YNEANL 76 (980)
T ss_pred hHHHHHHHhhCCCcccHHHHHHHHHHHHhhcC-CccHH-HHHHHHHHhhcccchhhhhhHHHHHHHHHHh----hccCCH
Confidence 3577888887766 88999999999999999 68875 778888875 478999999999999999874 556888
Q ss_pred HHHHHHHHHHHHHHhh-----c---chhhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCCCh-hHHHHHHHHHHH
Q 001487 99 HTQSSLKSMLLQSIQL-----E---SAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSV-KLQESAFLIFAQ 169 (1069)
Q Consensus 99 ~~~~~i~~~ll~~l~~-----e---~~~~vr~~~~~~i~~i~~~~~~~~~w~~ll~~l~~~~~~~~~-~~r~~al~~l~~ 169 (1069)
..+..+|..++..+.- + .++-+++.++++++.+.-.++| ..|+.++-.++..+.-+.. .-...-++++-.
T Consensus 77 ~elqlvR~sv~swlk~qvl~ne~~~~p~fi~Nk~aqvlttLf~~eYp-~~WnsfF~dlmsv~~~~s~~~~~dfflkvlla 155 (980)
T KOG2021|consen 77 NELQLVRFSVTSWLKFQVLGNEQTKLPDFIMNKIAQVLTTLFMLEYP-DCWNSFFDDLMSVFQVDSAISGLDFFLKVLLA 155 (980)
T ss_pred HHHHHHHHHHHHHHHHHHhCcccCCCChHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHhcccchhhHHHHHHHHHH
Confidence 8899999999887753 2 2556999999999999999999 7899999999888763321 112233334433
Q ss_pred hhhhhhhh------------------cc-hhHHHHHHHHHHhhc---CCCChHHHHHHHHHHHHHHHhhCCcchHhHHHh
Q 001487 170 LSQYIGDT------------------LT-PHLKHLHAVFLNCLT---NSNNPDVKIAALNAVINFIQCLTSSADRDRFQD 227 (1069)
Q Consensus 170 l~~~~~~~------------------~~-~~~~~l~~~l~~~l~---~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ 227 (1069)
+-.+..+. ++ ..++.+.....+.+. ...++.+-..++.|++.+++|+. ......
T Consensus 156 IdsEiad~dv~rT~eei~knnliKDaMR~ndip~lv~~wyqil~~y~n~~npgl~~~cLdc~g~fVSWId----InLIaN 231 (980)
T KOG2021|consen 156 IDSEIADQDVIRTKEEILKNNLIKDAMRDNDIPKLVNVWYQILKLYENIVNPGLINSCLDCIGSFVSWID----INLIAN 231 (980)
T ss_pred hhhHhhhccccCChHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHhhhhh----hhhhhc
Confidence 33222110 11 123333333333222 11267888999999999999973 222221
Q ss_pred hHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHccccHHHHH---------------------------------------
Q 001487 228 LLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRR--------------------------------------- 268 (1069)
Q Consensus 228 ~~~~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~--------------------------------------- 268 (1069)
..+++.+...++ -+++|.+|+.|+.+++...-+-+.+
T Consensus 232 --d~f~nLLy~fl~--ieelR~aac~cilaiVsKkMkP~dKL~lln~L~q~l~lfg~~s~dq~~d~df~e~vskLitg~g 307 (980)
T KOG2021|consen 232 --DYFLNLLYKFLN--IEELRIAACNCILAIVSKKMKPMDKLALLNMLNQTLELFGYHSADQMDDLDFWESVSKLITGFG 307 (980)
T ss_pred --hhHHHHHHHHHh--HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhhccccccCchHHHHHHHHHhhcc
Confidence 145566666554 5678888888888777653211110
Q ss_pred ------------------------hHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHH
Q 001487 269 ------------------------QLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFA 324 (1069)
Q Consensus 269 ------------------------~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~ 324 (1069)
.+-.+++++++.+.+ ..+++....+.||+.....-++-+........++.+++.
T Consensus 308 vel~~i~s~lnseld~~~kqn~l~~ll~~vpyllq~l~~--e~ddit~~ifpFlsdyl~~LKkl~~ls~~qk~~l~~ill 385 (980)
T KOG2021|consen 308 VELTIIISQLNSELDTLYKQNVLSILLEIVPYLLQFLNN--EFDDITAKIFPFLSDYLAFLKKLKALSSPQKVPLHKILL 385 (980)
T ss_pred eeeehhHhhhhhccCHHHHHHHHHHHHHHHHHHHHHhcc--cchhhHHHHHHHHHHHHHHHhhcccccchhhccHHHHHH
Confidence 011223333333322 123333334444444332211111111122235666777
Q ss_pred HHHHhhcCCCCCcccccCCCCCccccCCcchhh-HHHHHHHHHHHcCCccchHHHHHHHHHhhc---CCChHHHHHHHHH
Q 001487 325 ILMSMLLDIEDDPLWHSAETEDEDAGESSNYSV-GQECLDRLAIALGGNTIVPVASEQLPAYLA---APEWQKHHAALIA 400 (1069)
Q Consensus 325 ~l~~~l~~~~~~~~~~~~~~e~ed~~~~~~~~~-a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~---~~~~~~r~aal~~ 400 (1069)
..++.+++.+.. .|..+...+|+++....++. ....++.++..- |+.+...+-..+...+. ..+|..-+.|+..
T Consensus 386 ai~kqicydemy-~nddn~tg~EeEa~f~e~RkkLk~fqdti~~id-psl~l~~Ir~slS~al~ns~e~swqevE~Aiyl 463 (980)
T KOG2021|consen 386 AIFKQICYDEMY-FNDDNVTGDEEEAFFEEVRKKLKNFQDTIVVID-PSLFLNNIRQSLSAALMNSKEESWQEVELAIYL 463 (980)
T ss_pred HHHHHHhccHHh-hcccCCCCchHHHHHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 777777665321 23322111122222222222 222334444322 23333334344444333 3579999999999
Q ss_pred HHHHHhhcHHHHH----------HhHHHHHHHHHh--hCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHh-
Q 001487 401 LAQIAEGCAKVMV----------KNLEQVLSMVLN--SFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAG- 467 (1069)
Q Consensus 401 l~~l~~~~~~~~~----------~~~~~i~~~l~~--~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~- 467 (1069)
+..++++.+.... ..+..+.+.+.. .+..+++.|+---...+.++.+.+..+. .+++.++...+.
T Consensus 464 ly~lgE~l~~~~~~~nsgd~s~~~vl~~~~~ll~tsqv~~h~h~lVqLlfmE~ivRY~kff~~es--q~ip~vL~aFld~ 541 (980)
T KOG2021|consen 464 LYNLGECLKNNYFGLNSGDISTSQVLFLNELLLMTSQVLAHDHELVQLLFMELIVRYNKFFSTES--QKIPLVLNAFLDS 541 (980)
T ss_pred HHHHhhccccccccccCccccHHHHHHHHHHHHHHcccccCCchHHHHHHHHHHHHHHHHHhcch--hhhHHHHHHHccc
Confidence 9999987664111 122234444443 3467888888887888888776665443 455555555543
Q ss_pred -hccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcC------------ChhHHHHHHHHHHHHHHhh
Q 001487 468 -AMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNG------------KQMVQEGALTALASVADSS 534 (1069)
Q Consensus 468 -~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~i~~~l~~~l~~~------------~~~v~~~al~~l~~l~~~~ 534 (1069)
++.+ ++.+||.+|...+.++++.+++. +.||.+.++..+-.+++.. ..+-+..+++++|-++..-
T Consensus 542 rglhn-~ne~Vr~RawYLF~RfVKlLkkq-lvpfie~iln~iqdlL~~~vtt~N~~s~~lt~fddqlyIfEtiGviI~l~ 619 (980)
T KOG2021|consen 542 RGLHN-KNENVRLRAWYLFTRFVKLLKKQ-LVPFIEEILNKIQDLLHIKVTTINAQSDNLTIFDDQLYIFETIGVIITLN 619 (980)
T ss_pred hhccc-cccccchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCcCCCcCccccccccccccceeeecceEEEeCC
Confidence 3455 78899999999999999998754 6799999999998888432 1223345666777665321
Q ss_pred ---HhhhHhhHhhhhHHHHH-----HHhh-ccCccccchhh----HHHHHHHHHHHhhChhhh-------hhhHHHHHHH
Q 001487 535 ---QEHFQKYYDAVMPFLKA-----ILVN-ATDKSNRMLRA----KSMECISLVGMAVGKDKF-------RDDAKQVMEV 594 (1069)
Q Consensus 535 ---~~~~~~~~~~i~~~l~~-----~l~~-~~~~~~~~lr~----~a~~~l~~l~~~~~~~~~-------~~~~~~i~~~ 594 (1069)
.+.-..|.+.++..+.. .... -.+++...... .++.++|.+++....... .--..++.+.
T Consensus 620 n~paE~qaay~~~litpl~~~~~igl~~a~lasde~~pv~Ia~c~~~lmaig~lakgf~~rlvt~~qvg~~~vf~~~ldv 699 (980)
T KOG2021|consen 620 NSPAELQAAYANTLITPLILDQIIGLLFAQLASDEASPVVIAECHHILMAIGTLAKGFHIRLVTENQVGNMVVFSNILDV 699 (980)
T ss_pred CCCHHHHHHHHhcccChHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHhhcccccCcchhcccHHHHHHHHHHH
Confidence 12223355444332211 1111 01222222221 134556666665431110 0012233333
Q ss_pred HHHHhcCCCCCCCchhhHHHHHHHHHHHHhcCCcccchhhhhHHHHHhc
Q 001487 595 LMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSA 643 (1069)
Q Consensus 595 l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~~ 643 (1069)
++.... .+...+.+|..+-.+++++...+|+++-||+|..++.+++..
T Consensus 700 il~~ls-~f~k~E~iRsavrft~hRmI~~lg~~vlPfipklie~lL~s~ 747 (980)
T KOG2021|consen 700 ILVTLS-FFNKFENIRSAVRFTFHRMIPILGNKVLPFIPKLIELLLSST 747 (980)
T ss_pred HHHHHh-hccccchhHHHHHHHHHHHHHhcchhhhcchHHHHHHHHhcC
Confidence 333221 122346689888889999999999999999999999988766
No 19
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.89 E-value=2.1e-16 Score=194.39 Aligned_cols=779 Identities=13% Similarity=0.102 Sum_probs=458.3
Q ss_pred HHHHHHHHHhcCC--ChHHHHHHHHHHHHhhhcCch---------HHHHHHHHHHccCCCHHHHHHHHHHHHhhcccCCC
Q 001487 22 APFETLISHLMST--SNEQRSEAELLFNLCKQQDPD---------SLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDS 90 (1069)
Q Consensus 22 ~~l~~ll~~~~s~--d~~~r~~A~~~L~~~~~~~p~---------~~~~~L~~il~~~~~~~~R~~a~i~L~~~i~~~~~ 90 (1069)
..+..+++.+.++ +.+.|.+|...|..+.+.+++ ++++.|...|.+ .++.+|..|+-.|.++-..
T Consensus 13 ~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~s-g~~~vk~nAaaaL~nLS~~--- 88 (2102)
T PLN03200 13 ASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRS-GTLGAKVNAAAVLGVLCKE--- 88 (2102)
T ss_pred HHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcC-CCHHHHHHHHHHHHHHhcC---
Confidence 4677788888866 678899999999888765432 135778888864 5688999998777776543
Q ss_pred CcccCCCHHHH-----HHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCc------hhhHHHHHHhhcCCC---
Q 001487 91 FLWPRLSLHTQ-----SSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGW------PELLPFMFQCVSSDS--- 156 (1069)
Q Consensus 91 ~~w~~l~~~~~-----~~i~~~ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~~~~w------~~ll~~l~~~~~~~~--- 156 (1069)
++.+ ......|++.|.+ .+...|..++.+|..++......+.| +..+|.|...+++++
T Consensus 89 -------e~nk~~Iv~~GaIppLV~LL~s-Gs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d 160 (2102)
T PLN03200 89 -------EDLRVKVLLGGCIPPLLSLLKS-GSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQD 160 (2102)
T ss_pred -------HHHHHHHHHcCChHHHHHHHHC-CCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhh
Confidence 2222 2333467777775 57889999999999998742111222 567889999888764
Q ss_pred hhHHHHHHHHHHHhhhhhhhhcchh-HHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhCCcchHhHH--HhhHHHHH
Q 001487 157 VKLQESAFLIFAQLSQYIGDTLTPH-LKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRF--QDLLPLMM 233 (1069)
Q Consensus 157 ~~~r~~al~~l~~l~~~~~~~~~~~-~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~--~~~~~~~l 233 (1069)
..+++.+..+|..++.+.+...... -...++.+...+.++ ++.++..|+.++..++...++ ....+ .+.+|.++
T Consensus 161 ~~L~~~Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~-d~~lQ~eAa~aLa~Lass~ee--~~~aVIeaGaVP~LV 237 (2102)
T PLN03200 161 KVVEGLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLSSG-NSDAQANAASLLARLMMAFES--SISKVLDAGAVKQLL 237 (2102)
T ss_pred HHHHHHHHHHHHHHhcCccchHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCChH--HHHHHHHCCCHHHHH
Confidence 2345566788888887654322111 234778888888887 899999999988877765321 11211 23455554
Q ss_pred HHHHHHHhC-CChHHHHHHHHHHHHHHccccHHHHHhHH-HHHHHHHHHhcCCC-------cchHHHHHHHHHHHHHHHh
Q 001487 234 RTLTESLNN-GNEATAQEALELLIELAGTEPRFLRRQLV-DVVGSMLQIAEAES-------LEEGTRHLAIEFVITLAEA 304 (1069)
Q Consensus 234 ~~l~~~l~~-~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~l~~~l~~~~~~~~-------~~~~~r~~a~~~l~~l~~~ 304 (1069)
+ ++.+ .++.+|..|.++|..++....+.-..... ..++.+++.+..+. .....++.|...+..++..
T Consensus 238 ~----LL~sg~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg 313 (2102)
T PLN03200 238 K----LLGQGNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGG 313 (2102)
T ss_pred H----HHccCCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCC
Confidence 4 4433 45688999999999999765433221111 23455554443221 2345688899999999872
Q ss_pred hhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCcchhhHHHHHHHHHHHcCC-cc---ch--HHH
Q 001487 305 RERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGG-NT---IV--PVA 378 (1069)
Q Consensus 305 ~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~-~~---~~--~~l 378 (1069)
. ..+++.|.+.+....+. .....+...+..+...+.. .. .+ ..+
T Consensus 314 ---~-----------~~ll~~L~~ll~s~rd~----------------~~~ada~gALayll~l~d~~~~~~~~i~~~~v 363 (2102)
T PLN03200 314 ---M-----------SALILYLGELSESPRSP----------------APIADTLGALAYALMVFDSSAESTRAFDPTVI 363 (2102)
T ss_pred ---c-----------hhhHHHHHHhhcccchH----------------HHHHHHHhhHHHHHHhcCCchhhhhhcccccc
Confidence 1 23344443332111000 0000111223222221111 00 01 123
Q ss_pred HHHHHHhhcCCChHH-HHHHHHHHHHHHhhcH--HHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhHhhhchhHHh
Q 001487 379 SEQLPAYLAAPEWQK-HHAALIALAQIAEGCA--KVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQN 455 (1069)
Q Consensus 379 ~~~l~~~l~~~~~~~-r~aal~~l~~l~~~~~--~~~~~~~~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~ 455 (1069)
.+.+.+.+.++++.. .+.+..+|..+..+.. ..+ +-....+.++..+...+..+|..++++|..++..-......
T Consensus 364 ~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L--~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~a 441 (2102)
T PLN03200 364 EQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKL--NHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEA 441 (2102)
T ss_pred HHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHH--HhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 355666777665553 5556666655443221 111 11356778889999899999999999999998664333311
Q ss_pred hhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhH
Q 001487 456 QFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQ 535 (1069)
Q Consensus 456 ~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~i~~~l~~~l~~~~~~v~~~al~~l~~l~~~~~ 535 (1069)
-.-...+|.|++.|.+ ++..+|..+++++..+....+.....-.-...+|.|.+++.+++..+++.|.+++++++.. .
T Consensus 442 Ii~~ggIp~LV~LL~s-~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~-~ 519 (2102)
T PLN03200 442 LGGREGVQLLISLLGL-SSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCH-S 519 (2102)
T ss_pred HHHcCcHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC-c
Confidence 2234578999999998 8899999999999999764332110001124578889999999999999999999999874 3
Q ss_pred hhhHhhH--hhhhHHHHHHHhhccCccccchhhHHHHHHHHHHHhhChhhhhhhHHHHHHHHHHHhcCCCCCCCchhhHH
Q 001487 536 EHFQKYY--DAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYM 613 (1069)
Q Consensus 536 ~~~~~~~--~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~ 613 (1069)
++....+ ...+|.|.+++++. ....+..+..++..+...-.++.. +.++++ ... ++...+..+
T Consensus 520 ~qir~iV~~aGAIppLV~LL~sg----d~~~q~~Aa~AL~nLi~~~d~~~I----~~Lv~L----Lls---dd~~~~~~a 584 (2102)
T PLN03200 520 EDIRACVESAGAVPALLWLLKNG----GPKGQEIAAKTLTKLVRTADAATI----SQLTAL----LLG---DLPESKVHV 584 (2102)
T ss_pred HHHHHHHHHCCCHHHHHHHHhCC----CHHHHHHHHHHHHHHHhccchhHH----HHHHHH----hcC---CChhHHHHH
Confidence 3333333 35788888888663 234567778888777654332222 223332 221 123456677
Q ss_pred HHHHHHHHHHhcCC-cc-c--chhhhhHHHHHhcccCCCccccCCCCccccccCCCcccchhhcCCceeeeccchHHHHH
Q 001487 614 LQAWARLCKCLGQD-FL-P--YMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKA 689 (1069)
Q Consensus 614 ~~~~~~l~~~~~~~-~~-~--~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~ 689 (1069)
+..++++....... +. . --...++.+.+.+... .-..|+
T Consensus 585 L~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sg-------------------------------------s~~ikk 627 (2102)
T PLN03200 585 LDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSS-------------------------------------KEETQE 627 (2102)
T ss_pred HHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCC-------------------------------------CHHHHH
Confidence 77777775543221 01 0 0123556666665321 123477
Q ss_pred HHHHHHHHHHHHhhhccccc-HHHHHHHHhhccCCcCChHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHH-H
Q 001487 690 TACNMLCCYADELKEGFFPW-IDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSD-F 767 (1069)
Q Consensus 690 ~a~~~l~~l~~~~~~~~~p~-~~~~~~~l~~~l~~~~~~~ir~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 767 (1069)
.|+.+|..++...++..... ....++.++.++... +.++++.++++|..+.... ...+...+++ .
T Consensus 628 ~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~-~~~v~keAA~AL~nL~~~~------------~~~q~~~~v~~G 694 (2102)
T PLN03200 628 KAASVLADIFSSRQDLCESLATDEIINPCIKLLTNN-TEAVATQSARALAALSRSI------------KENRKVSYAAED 694 (2102)
T ss_pred HHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcC-ChHHHHHHHHHHHHHHhCC------------CHHHHHHHHHcC
Confidence 88888988876543322211 234566667777654 7889999999999987632 1222223333 3
Q ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHHHHHHhCCCCCHHHH--HHHHHHHHHHHHHHHhhHHHHHHHhcCCCCChHhhhH
Q 001487 768 IIPALVEALHKEPDTEICASMLDSLNECIQISGPLLDEGQV--RSIVDEIKQVITASSSRKRERAERAKAEDFDAEESEL 845 (1069)
Q Consensus 768 i~~~l~~~~~~~~~~~v~~~~l~~l~~~i~~~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~~e~~d~~~~~~ 845 (1069)
.+|+|++.+.. .+.+++..++.++..++.... +...+ ...+..+..+|...
T Consensus 695 aV~pL~~LL~~-~d~~v~e~Al~ALanLl~~~e---~~~ei~~~~~I~~Lv~lLr~G----------------------- 747 (2102)
T PLN03200 695 AIKPLIKLAKS-SSIEVAEQAVCALANLLSDPE---VAAEALAEDIILPLTRVLREG----------------------- 747 (2102)
T ss_pred CHHHHHHHHhC-CChHHHHHHHHHHHHHHcCch---HHHHHHhcCcHHHHHHHHHhC-----------------------
Confidence 77888888865 466777777777776654421 01100 12233333333321
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHhhhc--hhhhHHH--HHhhhhhhhcCCCCHHHHH--HHHHHHHHHHhHhhh-hh-
Q 001487 846 IKEENEQEEEVFDQVGEILGTLIKTFKAA--FLPFFDE--LSSYLTPMWGKDKTAEERR--IAICIFDDVAEQCRE-AA- 917 (1069)
Q Consensus 846 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~--~~~~~~~--l~~~l~~~l~~~~~~~~r~--~a~~~l~~l~~~~~~-~~- 917 (1069)
....+..++..+..|++..+.. +..+... .+..++.+|+. .+.+... -++.+++.+.+..+. ..
T Consensus 748 -------~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~-~~~~~~~~~~al~~l~~l~~~~~~~~~~ 819 (2102)
T PLN03200 748 -------TLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNS-TDLDSSATSEALEALALLARTKGGANFS 819 (2102)
T ss_pred -------ChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhc-CCcchhhHHHHHHHHHHHHhhcccCCCC
Confidence 1234556777788888777632 2233333 34445566632 2222233 377777777764211 11
Q ss_pred h-hhh-----HhHHHHHHhhccCCChhHHHhhhHHHHHHHhh
Q 001487 918 L-KYY-----ETYLPFLLEACNDENQDVRQAAVYGLGVCAEF 953 (1069)
Q Consensus 918 ~-~~~-----~~l~~~ll~~l~~~~~~vr~~a~~~lg~l~~~ 953 (1069)
. +|. +.=+..++.++...+|.+.+-|+..|.++|..
T Consensus 820 ~~~~~~~~e~p~~l~~l~~~l~~~~p~~~~kai~il~~~~~~ 861 (2102)
T PLN03200 820 HPPWAVLAEVPSSLEPLVRCLAEGHPLVQDKAIEILSRLCRD 861 (2102)
T ss_pred CCchhhHHhccCchHHHHHHHHcCChHHHHHHHHHHHHHhcc
Confidence 1 111 22234555666666777777776665555543
No 20
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.87 E-value=1.5e-18 Score=180.64 Aligned_cols=669 Identities=16% Similarity=0.167 Sum_probs=399.4
Q ss_pred cCCCChHHHHHHHHHHHHHHHhhCCcchHhHHHhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHccccHHHHHhHHHH
Q 001487 194 TNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDV 273 (1069)
Q Consensus 194 ~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l 273 (1069)
++. ....|..+++.|..=...+. ....|..++|.+++.-. +...|...+..+..+.........||...|
T Consensus 178 KNG-~~~mR~~~lRiLtdkav~fg---~~~vfnkvLp~lm~r~L------eDqerhl~vk~idr~Ly~lddl~~pyvhkI 247 (975)
T COG5181 178 KNG-GKRMRMEGLRILTDKAVNFG---AAAVFNKVLPMLMSREL------EDQERHLVVKLIDRLLYGLDDLKVPYVHKI 247 (975)
T ss_pred ccC-CchhhHHHHHHHHHHhhccc---HHHHHHHHHHHHHhhhh------hhhhhHhHHHHHHHHHHhcccccccceeeE
Confidence 444 77889999998886655442 22334555555544322 334566667777766655555555555443
Q ss_pred HHHHHHHhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCc
Q 001487 274 VGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESS 353 (1069)
Q Consensus 274 ~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~e~ed~~~~~ 353 (1069)
+-..-..+- +.+-..|...-+.+.+++.. + + +... +..| . +++. ..+.-
T Consensus 248 LvVv~plli--ded~~~r~~g~eii~nL~~~---~-G----l~~~--------vs~m---r--pDi~--------~~deY 296 (975)
T COG5181 248 LVVVGPLLI--DEDLKRRCMGREIILNLVYR---C-G----LGFS--------VSSM---R--PDIT--------SKDEY 296 (975)
T ss_pred EEEeecccc--CccHHHhcccHHHHHHHHHH---h-c----ccee--------eeec---c--CCcc--------cccHH
Confidence 321111111 12333444444555555542 0 0 0000 0000 0 0010 01112
Q ss_pred chhhHHHHHHHHHHHcCCccchHHHHHHHHHhhcCC-ChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCCh
Q 001487 354 NYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAP-EWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHP 432 (1069)
Q Consensus 354 ~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~-~~~~r~aal~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~d~~~ 432 (1069)
.+++...+...++..+| .+.++|++.....+. +|+.|+.++.+..+|+.-.+....+|+..++..+-.++.|.+.
T Consensus 297 VRnvt~ra~~vva~alg----v~~llpfl~a~c~SrkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~~~l~D~~~ 372 (975)
T COG5181 297 VRNVTGRAVGVVADALG----VEELLPFLEALCGSRKSWEARHTGIRIAQQICELLGRSRLSHLGPLLKCISKLLKDRSR 372 (975)
T ss_pred HHHHHHHHHHHHHHhhC----cHHHHHHHHHHhcCccchhhhchhhHHHHHHHHHhCccHHhhhhhHHHHHHHHhhccce
Confidence 34567778888888887 467788888888776 8999999999999999988777889999999999999999999
Q ss_pred hHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHh
Q 001487 433 RVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLL 512 (1069)
Q Consensus 433 ~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~i~~~l~~~l 512 (1069)
.||..++.+++.+++..+|-- ...++.++..|.+..+. .....-.+-..|.+.++.-++++...-+-...+..++..+
T Consensus 373 ~vRi~tA~alS~lae~~~Pyg-ie~fd~vl~pLw~g~~~-hrgk~l~sfLkA~g~iiplm~peYa~h~tre~m~iv~ref 450 (975)
T COG5181 373 FVRIDTANALSYLAELVGPYG-IEQFDEVLCPLWEGASQ-HRGKELVSFLKAMGFIIPLMSPEYACHDTREHMEIVFREF 450 (975)
T ss_pred eeeehhHhHHHHHHHhcCCcc-hHHHHHHHHHHHHHHHh-cCCchHHHHHHHhccccccCChHhhhhhHHHHHHHHHHHh
Confidence 999999999999999877644 45677888888877766 2223334445555556666666666667778899999999
Q ss_pred hcCChhHHHHHHHHHHHHHHhhHh-hhHhhHhhhhHHHHHHHhhc---c-------------------------------
Q 001487 513 QNGKQMVQEGALTALASVADSSQE-HFQKYYDAVMPFLKAILVNA---T------------------------------- 557 (1069)
Q Consensus 513 ~~~~~~v~~~al~~l~~l~~~~~~-~~~~~~~~i~~~l~~~l~~~---~------------------------------- 557 (1069)
++++.+.+...+...... ...+. .-..|.+++.|.+++-+-.. .
T Consensus 451 ~spdeemkk~~l~v~~~C-~~v~~~tp~~lr~~v~pefF~~fw~rr~A~dr~~~k~v~~ttvilAk~~g~~~v~~kil~~ 529 (975)
T COG5181 451 KSPDEEMKKDLLVVERIC-DKVGTDTPWKLRDQVSPEFFSPFWRRRSAGDRRSYKQVVLTTVILAKMGGDPRVSRKILEY 529 (975)
T ss_pred CCchhhcchhHHHHHHHH-hccCCCCHHHHHHhhcHHhhchHHHhhhcccccccceeehhHHHHHHHcCChHHHHHHHhh
Confidence 999888776655554443 33332 22234566666655443221 0
Q ss_pred -CccccchhhHHHHHHHHHHHhhChhhhhhhH-HHHHHHHHH-HhcCCCCCCCchhhHHHHHHHHHHHHhcCCcccchhh
Q 001487 558 -DKSNRMLRAKSMECISLVGMAVGKDKFRDDA-KQVMEVLMS-LQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSV 634 (1069)
Q Consensus 558 -~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~-~~i~~~l~~-l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 634 (1069)
.++..+.|.-+..+.+.+...+|...|..-+ +.++..++. ++.+. .--..++.||+.+..+++-...||++.
T Consensus 530 ~~De~ep~r~m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~-----~t~~~il~~f~tv~vsl~~r~kp~l~~ 604 (975)
T COG5181 530 YSDEPEPYRKMNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQD-----TTVGLILPCFSTVLVSLEFRGKPHLSM 604 (975)
T ss_pred ccCCcchhhhhhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhcc-----ccccEEEecccceeeehhhccCcchHH
Confidence 1111222222222333333223222222111 111222221 22211 111233456666666667778899999
Q ss_pred hhHHHHHhcccCCCccccCCCCccccccCCCcccchhhcCCceeeeccchHHHHHHHHHHHHHHHHHh---hh-cccccH
Q 001487 635 VMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADEL---KE-GFFPWI 710 (1069)
Q Consensus 635 i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~a~~~l~~l~~~~---~~-~~~p~~ 710 (1069)
++..+++.+..++. ..|+-|..+.+.++..+ +. ....++
T Consensus 605 ivStiL~~L~~k~p-------------------------------------~vR~~aadl~~sl~~vlk~c~e~~~l~kl 647 (975)
T COG5181 605 IVSTILKLLRSKPP-------------------------------------DVRIRAADLMGSLAKVLKACGETKELAKL 647 (975)
T ss_pred HHHHHHHHhcCCCc-------------------------------------cHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 99999999976542 12445555566665443 32 232333
Q ss_pred HHHHHHHhhccCCcCChHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHH
Q 001487 711 DQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLD 790 (1069)
Q Consensus 711 ~~~~~~l~~~l~~~~~~~ir~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~v~~~~l~ 790 (1069)
. ..+...+... ++++-...++|+..+...... . .+++.+..++|.|..++.+. ...+....+.
T Consensus 648 g---~iLyE~lge~-ypEvLgsil~Ai~~I~sv~~~--~----------~mqpPi~~ilP~ltPILrnk-h~Kv~~nti~ 710 (975)
T COG5181 648 G---NILYENLGED-YPEVLGSILKAICSIYSVHRF--R----------SMQPPISGILPSLTPILRNK-HQKVVANTIA 710 (975)
T ss_pred h---HHHHHhcCcc-cHHHHHHHHHHHHHHhhhhcc--c----------ccCCchhhccccccHhhhhh-hHHHhhhHHH
Confidence 3 2344455543 677766667776666554321 1 23445567778777777653 3344433333
Q ss_pred HHHHHHHHhCC-CCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCCCChHhhhHhhhhhhhHHHHHHHHHHHHHHHHH
Q 001487 791 SLNECIQISGP-LLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVFDQVGEILGTLIK 869 (1069)
Q Consensus 791 ~l~~~i~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 869 (1069)
+-..|...++ ..++.....++-.+...|+. ...+++..+...+|.+++
T Consensus 711 -lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks------------------------------~nKeiRR~A~~tfG~Is~ 759 (975)
T COG5181 711 -LVGTICMNSPEYIGVREWMRICFELVDSLKS------------------------------WNKEIRRNATETFGCISR 759 (975)
T ss_pred -HHHHHHhcCcccCCHHHHHHHHHHHHHHHHH------------------------------hhHHHHHhhhhhhhhHHh
Confidence 3334444444 34544444444444444443 234677788889999998
Q ss_pred HhhhchhhhHHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHHhHhhhhhhhhhHhHHHHHHhhccCCChhHHHhhhHHHHH
Q 001487 870 TFKAAFLPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGV 949 (1069)
Q Consensus 870 ~~~~~~~~~~~~l~~~l~~~l~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~l~~~ll~~l~~~~~~vr~~a~~~lg~ 949 (1069)
..|+.- ++..+++.++ ......|...--.|+-+.+.||.. .++|.++.--..++..|.+....+++.
T Consensus 760 aiGPqd------vL~~LlnnLk-vqeRq~RvctsvaI~iVae~cgpf------sVlP~lm~dY~TPe~nVQnGvLkam~f 826 (975)
T COG5181 760 AIGPQD------VLDILLNNLK-VQERQQRVCTSVAISIVAEYCGPF------SVLPTLMSDYETPEANVQNGVLKAMCF 826 (975)
T ss_pred hcCHHH------HHHHHHhcch-HHHHHhhhhhhhhhhhhHhhcCch------hhHHHHHhcccCchhHHHHhHHHHHHH
Confidence 888532 3444544442 222222333333567777788875 568999988889999999999999999
Q ss_pred HHhhcCCCchHHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHHHHHhhcCCCCC-------HhhHHHHHHhhCC
Q 001487 950 CAEFGGSVVKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQFHRDSID-------AAQVVPAWLNCLP 1019 (1069)
Q Consensus 950 l~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~-------~~~~~~~~l~~lp 1019 (1069)
+.++.++.-..|+..+.+.|-..+.+. +..-|..+...+-.+..++|..-+ ++-++|.+|.-.|
T Consensus 827 mFeyig~~s~dYvy~itPlleDAltDr------D~vhRqta~nvI~Hl~Lnc~gtg~eda~IHLlNllwpNIle~sP 897 (975)
T COG5181 827 MFEYIGQASLDYVYSITPLLEDALTDR------DPVHRQTAMNVIRHLVLNCPGTGDEDAAIHLLNLLWPNILEPSP 897 (975)
T ss_pred HHHHHHHHHHHHHHHhhHHHHhhhccc------chHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhhhhccCCCc
Confidence 999999888899999999998888765 456788888888888888877643 2444454444444
No 21
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.85 E-value=5.4e-17 Score=186.75 Aligned_cols=591 Identities=16% Similarity=0.210 Sum_probs=358.5
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHHHcccc--HHHHHhHHHHHHHHHHHhcCC-CcchHHHHHHHHHHHHHHHhhh
Q 001487 230 PLMMRTLTESLNNGNEATAQEALELLIELAGTEP--RFLRRQLVDVVGSMLQIAEAE-SLEEGTRHLAIEFVITLAEARE 306 (1069)
Q Consensus 230 ~~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~--~~~~~~~~~l~~~l~~~~~~~-~~~~~~r~~a~~~l~~l~~~~~ 306 (1069)
..+.+.+...+.++++..|++++-.+..++...+ +...-+.++|...+...+.+. +...++....+...+.+...
T Consensus 817 ~~~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~-- 894 (1702)
T KOG0915|consen 817 TIILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDS-- 894 (1702)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCc--
Confidence 3456677777778899999998877777776554 223334556665555555432 22233334444444444441
Q ss_pred ccchhhhcchhhHHHHHHHHHHhhcCCCC-------CcccccCCCCCc--cccCCcchhhHHHHHHHHHHHcCCccchHH
Q 001487 307 RAPGMMRKLPQFINRLFAILMSMLLDIED-------DPLWHSAETEDE--DAGESSNYSVGQECLDRLAIALGGNTIVPV 377 (1069)
Q Consensus 307 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~-------~~~~~~~~~e~e--d~~~~~~~~~a~~~l~~l~~~~~~~~~~~~ 377 (1069)
+.-+.++..|++.+....- +.+......-.. |.+.- ...+-|-.++..+|- |.
T Consensus 895 ----------~~k~~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~i----sTYKELc~LASdl~q----Pd 956 (1702)
T KOG0915|consen 895 ----------SLKKSLVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKI----STYKELCNLASDLGQ----PD 956 (1702)
T ss_pred ----------hhHHHHHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcc----hHHHHHHHHHhhcCC----hH
Confidence 1224455555555543211 111100000000 01111 233456667766663 33
Q ss_pred HHHHHHHhhc-CCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhHhhhchhHHhh
Q 001487 378 ASEQLPAYLA-APEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQ 456 (1069)
Q Consensus 378 l~~~l~~~l~-~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 456 (1069)
++-.+.+..+ +..|..|.+|...++.|+....+.+.+|+++++|.+.++=.||++.|+.+.....+.+...-...+ +.
T Consensus 957 LVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~v-d~ 1035 (1702)
T KOG0915|consen 957 LVYKFMQLANHNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVV-DE 1035 (1702)
T ss_pred HHHHHHHHhhhhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHH-HH
Confidence 3322333333 568999999999999999999999999999999999999999999999998888888776544434 78
Q ss_pred hhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHH---HHHHHHHHHh
Q 001487 457 FHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGA---LTALASVADS 533 (1069)
Q Consensus 457 ~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~i~~~l~~~l~~~~~~v~~~a---l~~l~~l~~~ 533 (1069)
|+.+|+..|+..+.+ +.|+||+++|.||..++..-+.+.+...++.++..++..+++-...||+.+ ..+++.++-.
T Consensus 1036 y~neIl~eLL~~lt~-kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr 1114 (1702)
T KOG0915|consen 1036 YLNEILDELLVNLTS-KEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVR 1114 (1702)
T ss_pred HHHHHHHHHHHhccc-hhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999 999999999999999999877666778899999999999999888888765 4555555544
Q ss_pred hHhh-----hHhhHhhhhHHHHHHHhhccCccccchhhHHHHHHHHHHHhhChhhhhhhHHHHHHHHHHHhcCCCCCCCc
Q 001487 534 SQEH-----FQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDP 608 (1069)
Q Consensus 534 ~~~~-----~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~ 608 (1069)
.++. -...++.++|+|..- ..-....++|.-++..+..++...| ..+.||.++++..+++..+. ++ +.
T Consensus 1115 ~~d~~~~~~~~~~l~~iLPfLl~~---gims~v~evr~~si~tl~dl~Kssg-~~lkP~~~~LIp~ll~~~s~-lE--~~ 1187 (1702)
T KOG0915|consen 1115 ICDVTNGAKGKEALDIILPFLLDE---GIMSKVNEVRRFSIGTLMDLAKSSG-KELKPHFPKLIPLLLNAYSE-LE--PQ 1187 (1702)
T ss_pred hcccCCcccHHHHHHHHHHHHhcc---CcccchHHHHHHHHHHHHHHHHhch-hhhcchhhHHHHHHHHHccc-cc--hH
Confidence 4322 234677888887642 1112345678889999999999999 57999999999988875442 11 11
Q ss_pred hhhHH-HHHHHHHHHHh---c---CCccc---------------chhhhhHHHHHhcccCCCccccCCCCccccccCCCc
Q 001487 609 TTSYM-LQAWARLCKCL---G---QDFLP---------------YMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDD 666 (1069)
Q Consensus 609 ~~~~~-~~~~~~l~~~~---~---~~~~~---------------~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 666 (1069)
+..|. +++.+.=.+.+ . ..-.| .+..++|.+.+.+..
T Consensus 1188 vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~--------------------- 1246 (1702)
T KOG0915|consen 1188 VLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRG--------------------- 1246 (1702)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhc---------------------
Confidence 11111 01100000000 0 00111 122344444444321
Q ss_pred ccchhhcCCceeeeccchHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHhhccCCcCChHHHHHHHHhHHHHHHHHHH
Q 001487 667 SMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKL 746 (1069)
Q Consensus 667 ~~~~~~~~~~~~~v~~~~~~~k~~a~~~l~~l~~~~~~~~~p~~~~~~~~l~~~l~~~~~~~ir~~a~~~l~~l~~~~~~ 746 (1069)
+|- +..|..+...+..++..++..+.||.++++..+++.+.| .++.+|++.+.++|.+++..
T Consensus 1247 ------------sVg---l~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~d-RNesv~kafAsAmG~L~k~S-- 1308 (1702)
T KOG0915|consen 1247 ------------SVG---LGTKVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAKD-RNESVRKAFASAMGYLAKFS-- 1308 (1702)
T ss_pred ------------cCC---CCcchhHHHHHHHHHHHhccccCcchhHHHHHHhhcccc-ccHHHHHHHHHHHHHHHhcC--
Confidence 111 123677888899999999999999999999999999998 69999999999999998753
Q ss_pred HHHcCCCCCCCHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhH
Q 001487 747 AIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRK 826 (1069)
Q Consensus 747 ~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~v~~~~l~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 826 (1069)
.++..+.+++.++..++..- ++...+.. ..+.. |..- .++.+..+.+.+++++.-...
T Consensus 1309 ----------s~dq~qKLie~~l~~~l~k~--es~~sisc---atis~-Ian~----s~e~Lkn~asaILPLiFLa~~-- 1366 (1702)
T KOG0915|consen 1309 ----------SPDQMQKLIETLLADLLGKD--ESLKSISC---ATISN-IANY----SQEMLKNYASAILPLIFLAMH-- 1366 (1702)
T ss_pred ----------ChHHHHHHHHHHHHHHhccC--CCccchhH---HHHHH-HHHh----hHHHHHhhHHHHHHHHHHHHh--
Confidence 44467777777665444321 11113322 22222 2111 223344444555444332110
Q ss_pred HHHHHHhcCCCCChHhhhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhchhh-hHHHHHhhhhhhhcCCCCHHHHHHHHHH
Q 001487 827 RERAERAKAEDFDAEESELIKEENEQEEEVFDQVGEILGTLIKTFKAAFLP-FFDELSSYLTPMWGKDKTAEERRIAICI 905 (1069)
Q Consensus 827 ~~~~~~~~~e~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-~~~~l~~~l~~~l~~~~~~~~r~~a~~~ 905 (1069)
|+ + .+...++ -+++..++.. +....+ |...++..++.....+.+...|..+...
T Consensus 1367 ---------ee-~-----------Ka~q~Lw---~dvW~e~vsg-gagtvrl~~~eiLn~iceni~nn~~w~lr~q~Aka 1421 (1702)
T KOG0915|consen 1367 ---------EE-E-----------KANQELW---NDVWAELVSG-GAGTVRLYLLEILNLICENITNNESWKLRKQAAKA 1421 (1702)
T ss_pred ---------HH-H-----------HHHHHHH---HHHHHHhCCC-CcchhhhhHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence 00 0 0111111 2233332222 222233 4444444444333344445666666666
Q ss_pred HHHHHhHhhhhhh-hhhHhHHHHHHhhccCC
Q 001487 906 FDDVAEQCREAAL-KYYETYLPFLLEACNDE 935 (1069)
Q Consensus 906 l~~l~~~~~~~~~-~~~~~l~~~ll~~l~~~ 935 (1069)
+..++........ |++-.+.+.+++.+...
T Consensus 1422 i~~~a~~~sss~~~p~ilkl~~~ll~~L~GR 1452 (1702)
T KOG0915|consen 1422 IRVIAEGLSSSAPIPVILKLALSLLDTLNGR 1452 (1702)
T ss_pred HHHHcccccccCChHHHHHHHHHHHHHhhcc
Confidence 6666655544433 56777778888877654
No 22
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=3.2e-13 Score=148.35 Aligned_cols=539 Identities=17% Similarity=0.230 Sum_probs=333.2
Q ss_pred ChHHHHHHHHHhcCC-ChHHHHHHHHHHHHhhhcCchHHHHHHHHHHccCCCHHHHHHHHHHHHhhcccCCCCcccCCCH
Q 001487 20 DSAPFETLISHLMST-SNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSL 98 (1069)
Q Consensus 20 ~~~~l~~ll~~~~s~-d~~~r~~A~~~L~~~~~~~p~~~~~~L~~il~~~~~~~~R~~a~i~L~~~i~~~~~~~w~~l~~ 98 (1069)
+.+.++.++..++++ +.+...+++++|+..+. .|.+| ..-.++++.+..+++|.++|+.|.-.|+++ |...++
T Consensus 5 ~Ia~v~~~v~~lY~~~~~~~~a~~qk~Lq~aq~-S~Q~w-~~s~~llQ~~k~~evqyFGAltL~~ki~~~----~e~~~~ 78 (982)
T KOG2022|consen 5 LIATVEELVTTLYSHRNHENDAITQKWLQDAQC-SQQGW-HFSWQLLQPDKSSEVQYFGALTLHDKINTR----WEECPA 78 (982)
T ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHh-hHHHH-HHHHHHcCCCchhHHHHHhHHHHHHHHHhh----hccCCh
Confidence 457888999999988 66778888889998887 45554 666777887888999999999999999998 999999
Q ss_pred HHHHHHHHHHHHHHhhc--chhhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCCCh-----hHH-HHHHHHHHHh
Q 001487 99 HTQSSLKSMLLQSIQLE--SAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSV-----KLQ-ESAFLIFAQL 170 (1069)
Q Consensus 99 ~~~~~i~~~ll~~l~~e--~~~~vr~~~~~~i~~i~~~~~~~~~w~~ll~~l~~~~~~~~~-----~~r-~~al~~l~~l 170 (1069)
+..++++..++..+... ...-|-+..+-.++.++-+..| +.||.-+..++..++.... ..+ ..-+..|..+
T Consensus 79 ~~~~qL~~klf~~l~~~~g~~~lVl~kl~~sLasl~l~~~~-d~Wp~ai~~vi~~l~~q~~p~v~ad~n~~~~Le~Ls~~ 157 (982)
T KOG2022|consen 79 NEAVQLKLKLFLILSRFAGGPKLVLNKLCASLASLILYMVP-DLWPTAIQDVIPTLQGQASPLVLADINCEILLEVLSFM 157 (982)
T ss_pred hHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHcc-ccCCchHHHHHHHHhcccCccccchhhHHHHHHHhccC
Confidence 99999999999887642 2334566667777777777777 7999988888888765321 122 2233444433
Q ss_pred hhhhh-------------hhcchhHHHHHHHHHHhhcCCC--Ch-----HHHHHHHHHHHHHHHhhCCcchHhHHHhhHH
Q 001487 171 SQYIG-------------DTLTPHLKHLHAVFLNCLTNSN--NP-----DVKIAALNAVINFIQCLTSSADRDRFQDLLP 230 (1069)
Q Consensus 171 ~~~~~-------------~~~~~~~~~l~~~l~~~l~~~~--~~-----~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~ 230 (1069)
..++. .++.......++.+...++... .+ -.+.++++|+..++.+++-.. .....+..
T Consensus 158 p~e~q~~~l~~t~~~~l~~eLak~~~~v~~l~e~vlr~~~n~t~s~~~~i~~~~a~dCv~~Wi~~i~~~~--~~c~~i~~ 235 (982)
T KOG2022|consen 158 PAEFQHVTLPLTRRSVLRGELAKFSENVISLLEVVLRGGSNSTSSLINLIFKQAAVDCVEQWIRYISLTG--MDCDQITQ 235 (982)
T ss_pred cHhhhhccchhHHHHHHHHHHHHHHHHHhHHHHHHHhccccccHHHHHHHhhhHHHHHHHHHHHHhcccc--ccHHHHHH
Confidence 33321 1122223334444444444331 22 356678888888877543110 00001111
Q ss_pred HHHHHHH---------------------------------------------------------------HHHhCCC--h
Q 001487 231 LMMRTLT---------------------------------------------------------------ESLNNGN--E 245 (1069)
Q Consensus 231 ~~l~~l~---------------------------------------------------------------~~l~~~~--~ 245 (1069)
.++.++. +...+.| .
T Consensus 236 ~ll~~l~~s~~~~~~a~~~cmt~~~n~la~~~l~~~v~~i~q~d~~~y~nti~~li~i~~~~l~e~~~~~~~~e~~d~~~ 315 (982)
T KOG2022|consen 236 VLLDVLGQSTEGSYEAAEKCMTIFGNVLADDTLLASVNDIIQPDCEFYRNTITLLISICLGILQEVSGKIQEEENADASE 315 (982)
T ss_pred HHHHHHhhhccccccchhhhcccchhhhccchHHHHHHHhcChHHHhccchHHHHHHHHHHHHHHHHHHHHHHhCCCchh
Confidence 1111111 0011111 1
Q ss_pred HHHHHHHHHHHHHHccccHHHHH---------hHHHHHHHHHHHhcCCC---cchHHHHHHHHHHHHHHHhhh------c
Q 001487 246 ATAQEALELLIELAGTEPRFLRR---------QLVDVVGSMLQIAEAES---LEEGTRHLAIEFVITLAEARE------R 307 (1069)
Q Consensus 246 ~~~~~~~~~l~~l~~~~~~~~~~---------~~~~l~~~l~~~~~~~~---~~~~~r~~a~~~l~~l~~~~~------~ 307 (1069)
+.....+.+....+++....+-. ++..++..++.+.+.+. .++.+...++.||.++.+..- .
T Consensus 316 e~i~~~~~i~v~~~En~l~~lid~~~~g~~~e~v~rlv~vll~~t~~PG~ypveE~~S~~~l~FW~tL~dei~~~~~e~~ 395 (982)
T KOG2022|consen 316 EEIVTFLAITVSSVENHLPTLIDCAAQGEQSELVIRLVQVLLVLTNFPGQYPVEEIVSDRTLIFWYTLQDEIMQTINETQ 395 (982)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHhhcchHHHHHHHHHHHHHHhCCCCCccHHHHHhHHHHHHHHHHHHHHHHhhhccC
Confidence 22222233333333333222211 22234444444443332 355667778999999876410 0
Q ss_pred cchhhhcchhhHHHHHHHHHHhhcCCCCCc--ccccCCCCCccccCCcchh-hHHHHHHHHHHHcCCccchHHHHHHHHH
Q 001487 308 APGMMRKLPQFINRLFAILMSMLLDIEDDP--LWHSAETEDEDAGESSNYS-VGQECLDRLAIALGGNTIVPVASEQLPA 384 (1069)
Q Consensus 308 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~--~~~~~~~e~ed~~~~~~~~-~a~~~l~~l~~~~~~~~~~~~l~~~l~~ 384 (1069)
.+.-.....+...+++..++..+..+.+.. .|..++. +....|+ ...+++...-..+| +.++..+...+.+
T Consensus 396 ~~~~~i~~~qIy~qlvei~l~K~~~Ps~e~~~~W~S~s~-----e~F~~YR~diSD~~~~~Y~ilg-d~ll~~L~~~l~q 469 (982)
T KOG2022|consen 396 QIKKQILSQQIYAQLVEILLKKLALPSKEIWLSWSSDSR-----EQFESYRKDISDLLMSSYSILG-DGLLDFLIDTLEQ 469 (982)
T ss_pred CcchhHHHHHHHHHHHHHHHHHhcCCCHHHhccCCcchH-----HHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHH
Confidence 010000011344556666666665553321 3443321 1222332 33344444444556 6788888888888
Q ss_pred hhcCCC-----hHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhh-CCCCChhHHHHHHHHHHHhHhhhchhHHhhhh
Q 001487 385 YLAAPE-----WQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNS-FRDPHPRVRWAAINAIGQLSTDLGPDLQNQFH 458 (1069)
Q Consensus 385 ~l~~~~-----~~~r~aal~~l~~l~~~~~~~~~~~~~~i~~~l~~~-l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 458 (1069)
.+.+.+ |..-++++..+..+++..+......++.++...... +.-.+|..-..+...+|.++.+++... -|+
T Consensus 470 ~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~~~~i~rl~~~~asik~S~~n~ql~~Tss~~igs~s~~l~e~P--~~l 547 (982)
T KOG2022|consen 470 ALAAGDEDPDSLNRTEACIFQFQSVAEYLGETESTWIPRLFETSASIKLSAPNPQLLSTSSDLIGSLSNWLGEHP--MYL 547 (982)
T ss_pred hhhccCCCchHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHhccccccccCChhHHHHHHHHHHHHHHHHhcCC--ccc
Confidence 888765 999999999999999987765555555554433321 234488889999999999999998764 589
Q ss_pred hhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcC--ChhHHHHHHHHHHHHHHhhH-
Q 001487 459 PQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNG--KQMVQEGALTALASVADSSQ- 535 (1069)
Q Consensus 459 ~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~i~~~l~~~l~~~--~~~v~~~al~~l~~l~~~~~- 535 (1069)
+..+|.|++.+.. + +.-..+...+..+|+.++. .+.||.+.++..+-..+... ....|..++.++|.+.....
T Consensus 548 n~sl~~L~~~Lh~-s--k~s~q~i~tl~tlC~~C~~-~L~py~d~~~a~~~e~l~~~~~~~S~~~klm~sIGyvls~~~p 623 (982)
T KOG2022|consen 548 NPSLPLLFQGLHN-S--KESEQAISTLKTLCETCPE-SLDPYADQFSAVCYEVLNKSNAKDSDRLKLMKSIGYVLSRLKP 623 (982)
T ss_pred CchHHHHHHHhcC-c--hHHHHHHHHHHHHHHhhhh-hCchHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHHhccH
Confidence 9999999999975 2 3335566779999999985 48899999999988888764 46789999999999988775
Q ss_pred hhhHhhHhhhhHHHHHHHhhccCc----cccchhhH-HHHHHHHHHHhh
Q 001487 536 EHFQKYYDAVMPFLKAILVNATDK----SNRMLRAK-SMECISLVGMAV 579 (1069)
Q Consensus 536 ~~~~~~~~~i~~~l~~~l~~~~~~----~~~~lr~~-a~~~l~~l~~~~ 579 (1069)
+...+|+.+++..+..-++....+ ....+|.. -+.+++.+..+.
T Consensus 624 Ee~~kyl~~lin~il~qle~~l~~~i~~~e~~l~~~~~l~~iS~LftSL 672 (982)
T KOG2022|consen 624 EEIPKYLMKLINPILSQLEINLAPGIDDQENHLRIAFQLNTISALFTSL 672 (982)
T ss_pred HhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhcc
Confidence 455668888887777766653111 12222222 244566666553
No 23
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=99.82 E-value=4.3e-13 Score=140.98 Aligned_cols=497 Identities=18% Similarity=0.261 Sum_probs=315.9
Q ss_pred CChHHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHccCCCHHHHHHHHHHHHhhcccCCCCcccCCCH
Q 001487 19 PDSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSL 98 (1069)
Q Consensus 19 ~~~~~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~~p~~~~~~L~~il~~~~~~~~R~~a~i~L~~~i~~~~~~~w~~l~~ 98 (1069)
.|.+-+-+++...++||+..+++|++-|.+|++ +|++| ...-+||..+..|+.+..|..+|.++|..+ |.-++.
T Consensus 11 LdiallDkVVttfyqg~g~~q~qAq~iLtkFq~-~PdaW-tkad~IL~~S~~pqskyiALs~LdklIttk----Wkllp~ 84 (1053)
T COG5101 11 LDIALLDKVVTTFYQGDGRKQEQAQRILTKFQE-LPDAW-TKADYILNNSKLPQSKYIALSLLDKLITTK----WKLLPE 84 (1053)
T ss_pred cCHHHHHHHHHHhcCCCchhHHHHHHHHHHHHh-CchHH-HHHHHHHhcccCcchhhhHHHHHHHHHHhh----hhhCCc
Confidence 467788899999999999999999999999999 89997 778889999999999999999999999998 999999
Q ss_pred HHHHHHHHHHHHHHhhc-chhhH-------HHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCCChhHHHHHHHHHHHh
Q 001487 99 HTQSSLKSMLLQSIQLE-SAKSI-------SKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQL 170 (1069)
Q Consensus 99 ~~~~~i~~~ll~~l~~e-~~~~v-------r~~~~~~i~~i~~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l 170 (1069)
+.+..+|.-+.+.+-.. .+..+ -+.+-..+-.|++.+|| ..||+++|.+++..+ .+-++.+..+.+|..+
T Consensus 85 ~~r~GiRnyvv~~vI~~s~dd~v~~~qk~~lnkldltLvqIlKqeWP-~nWP~FIpeli~~S~-~s~~vCeNnmivLklL 162 (1053)
T COG5101 85 GMRQGIRNYVVQLVIEKSQDDKVRDKQKYVLNKLDLTLVQILKQEWP-RNWPTFIPELINVSQ-ISMEVCENNMIVLKLL 162 (1053)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhHHHHHHHHhcc-cccchhhHHHHhhcc-chHHHHhccHHHHHHh
Confidence 99999999988877542 23333 33445567788899999 899999999999876 4567788888888888
Q ss_pred hhhhh----h------------hcchhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhCCcchHhHHHhhHHHHHH
Q 001487 171 SQYIG----D------------TLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMR 234 (1069)
Q Consensus 171 ~~~~~----~------------~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~ 234 (1069)
.+..- + ++.-.+++++..+.+.|.-..++..-.+++..+..+..|++-. -.| ...+++
T Consensus 163 sEEvFdfSaeqmTq~k~~~LkNqm~~EF~qIF~lc~qiLE~~~~~SLi~ATLesllrfl~wiPl~---yIf---eTnIie 236 (1053)
T COG5101 163 SEEVFDFSAEQMTQVKKRLLKNQMKIEFPQIFGLCKQILEYSRDESLIEATLESLLRFLEWIPLD---YIF---ETNIIE 236 (1053)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhCchh---HHH---HHHHHH
Confidence 77531 1 2233567888888888876667788888999998888887421 111 224555
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHHHccc--c-------HHHHHhH---------------------------------HH
Q 001487 235 TLTESLNNGNEATAQEALELLIELAGTE--P-------RFLRRQL---------------------------------VD 272 (1069)
Q Consensus 235 ~l~~~l~~~~~~~~~~~~~~l~~l~~~~--~-------~~~~~~~---------------------------------~~ 272 (1069)
.+...+. ..++.|..++.|+.+++... | ..+.-|. ..
T Consensus 237 Lv~~~f~-s~pd~r~~tl~CLtEi~~L~~~pq~n~~~~r~~v~~fq~i~~~~~~s~~p~~~d~~e~Y~~~~~neq~Fvq~ 315 (1053)
T COG5101 237 LVLEHFN-SMPDTRVATLSCLTEIVDLGRHPQENAEKERILVIHFQCIEFLKMYSNKPQEEDIYEVYGGMDKNEQIFVQK 315 (1053)
T ss_pred HHHHHhc-cCCchhHHHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHHHHHHhccchHHHHHHHHcccChhHHHHHHH
Confidence 5544443 35677888888888776532 1 0000000 00
Q ss_pred HHHHH-------HHHhcCCC------------------cchHHHHHHHHHHHHHHHh-h---hc------cc--------
Q 001487 273 VVGSM-------LQIAEAES------------------LEEGTRHLAIEFVITLAEA-R---ER------AP-------- 309 (1069)
Q Consensus 273 l~~~l-------~~~~~~~~------------------~~~~~r~~a~~~l~~l~~~-~---~~------~~-------- 309 (1069)
+..++ +..++.++ .+.++-..+++.|..++-- . ++ .|
T Consensus 316 LA~fL~s~~~~~~~lLE~~e~~e~llnah~YLiqiSrInereiFkt~leyW~klVadLy~E~q~lp~tem~Pli~ls~~s 395 (1053)
T COG5101 316 LAQFLSSLYEVYISLLEAREMAENLLNAHGYLIQISRINEREIFKTALEYWNKLVADLYSEFQRLPATEMSPLIQLSVGS 395 (1053)
T ss_pred HHHHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCcchhccccc
Confidence 00000 00111110 1122334455555544321 0 00 01
Q ss_pred -------hhhhc--ch-----hhHHHHHHHHHHhhcCCCCCcccccCCCCCc-------cccCCcchhhHHHHHHHHHHH
Q 001487 310 -------GMMRK--LP-----QFINRLFAILMSMLLDIEDDPLWHSAETEDE-------DAGESSNYSVGQECLDRLAIA 368 (1069)
Q Consensus 310 -------~~~~~--~~-----~~~~~l~~~l~~~l~~~~~~~~~~~~~~e~e-------d~~~~~~~~~a~~~l~~l~~~ 368 (1069)
..... +. ..+.++.-.++..|..+++- .-..+++.| |.|.-..++.-..+|-.++..
T Consensus 396 ~~istnpn~~~~~pLrkhiY~~ilsqLrlvlienMvrPEEV--liVendegEivRefvketDtI~lYksmRevLvyLthL 473 (1053)
T COG5101 396 QAISTNPNQDSTKPLRKHIYIGILSQLRLVLIENMVRPEEV--LIVENDEGEIVREFVKETDTIELYKSMREVLVYLTHL 473 (1053)
T ss_pred hhccCCcchhcccchHHHHHHHHHHHHHHHHHHcCCCcceE--EEEECCCcHHHHHHhccccHhHHHHHHhhHHHHHhhh
Confidence 00000 00 01111222222222222210 111111111 111122344445555555533
Q ss_pred cCCccchHHHHHHHHHhhcCC--ChHHHHHHHHHHHHHHhhcHHHHHH-hHHHHHHHHH-----hhCCCCChhHHHHHHH
Q 001487 369 LGGNTIVPVASEQLPAYLAAP--EWQKHHAALIALAQIAEGCAKVMVK-NLEQVLSMVL-----NSFRDPHPRVRWAAIN 440 (1069)
Q Consensus 369 ~~~~~~~~~l~~~l~~~l~~~--~~~~r~aal~~l~~l~~~~~~~~~~-~~~~i~~~l~-----~~l~d~~~~vr~~a~~ 440 (1069)
.- .+.-..++..+-..+.+. +|+.-..-++++|+++...++...+ .+-.++.-++ +..+|....|-.....
T Consensus 474 ~v-~Dte~~mi~Klarq~dg~EWsw~nlNtLcWAIGSISGamsE~~EkrF~VnviKdLL~LcemKrgKdnKAVvASnIMy 552 (1053)
T COG5101 474 IV-DDTEKYMIGKLARQLDGKEWSWNNLNTLCWAIGSISGAMSEVNEKRFFVNVIKDLLALCEMKRGKDNKAVVASNIMY 552 (1053)
T ss_pred hh-hhHHHHHHHHHHHHhcCCccchhhHhHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhecceee
Confidence 22 344455566666666655 4677778899999998877764432 2333333332 3445665555556667
Q ss_pred HHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcc-------cccCchHHHHHHHHHHhh
Q 001487 441 AIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPE-------ILTPYLDGIVSKLLVLLQ 513 (1069)
Q Consensus 441 ~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~-------~~~~~l~~i~~~l~~~l~ 513 (1069)
.+|++-+.+.... .++..++..|+..+.+ .+..|+.-||..+-.+++.|+-+ .-.|+...|+..+-+.-.
T Consensus 553 vvGQYpRFLkahw--~FLkTVv~KLFEFMhE-~HEGvqDMACDtFiKIvqKC~~hFv~Qq~gesEpFI~~Iirnl~ktT~ 629 (1053)
T COG5101 553 VVGQYPRFLKAHW--SFLKTVVKKLFEFMHE-DHEGVQDMACDTFIKIVQKCPVHFVTQQEGESEPFIVYIIRNLPKTTG 629 (1053)
T ss_pred eeccchHHHHHHH--HHHHHHHHHHHHHHhh-hhhhHHhhhHHHHHHHHHhCcHHHhhcCCCCCCcHHHHHHHhhhhhcc
Confidence 7788776666554 6788999999999988 78999999999999998877532 235788888888777766
Q ss_pred cCChhHHHHHHHHHHHHHHhhHh
Q 001487 514 NGKQMVQEGALTALASVADSSQE 536 (1069)
Q Consensus 514 ~~~~~v~~~al~~l~~l~~~~~~ 536 (1069)
+-.+.-+..-.++.|.+++..+.
T Consensus 630 dL~pqQ~htfYeAcg~vIse~p~ 652 (1053)
T COG5101 630 DLEPQQKHTFYEACGMVISEVPK 652 (1053)
T ss_pred cCChHHHhHHHHHHhHHHhccch
Confidence 66666667788889988877653
No 24
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.82 E-value=9.3e-15 Score=180.14 Aligned_cols=766 Identities=15% Similarity=0.134 Sum_probs=443.5
Q ss_pred hhhHHHHHHhhcCCChhHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhCCcch
Q 001487 142 PELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSAD 221 (1069)
Q Consensus 142 ~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~ 221 (1069)
.+.+|.|...+.+++...+..+..++..++.+-...-.-.....+|.++..|++. +.+.|..|..+|..+...-.....
T Consensus 57 aGaIP~LV~lL~sg~~~vk~nAaaaL~nLS~~e~nk~~Iv~~GaIppLV~LL~sG-s~eaKe~AA~AL~sLS~~~~~D~~ 135 (2102)
T PLN03200 57 SQAMPLLVSLLRSGTLGAKVNAAAVLGVLCKEEDLRVKVLLGGCIPPLLSLLKSG-SAEAQKAAAEAIYAVSSGGLSDHV 135 (2102)
T ss_pred cCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHcCChHHHHHHHHCC-CHHHHHHHHHHHHHHHcCcchhhh
Confidence 4568899999999999999999999998886622111112356778888888887 899999999999998864210101
Q ss_pred H-hH--HHhhHHHHHHHHHHHHhCC---ChHHHHHHHHHHHHHHccccHHHHHhHH-HHHHHHHHHhcCCCcchHHHHHH
Q 001487 222 R-DR--FQDLLPLMMRTLTESLNNG---NEATAQEALELLIELAGTEPRFLRRQLV-DVVGSMLQIAEAESLEEGTRHLA 294 (1069)
Q Consensus 222 ~-~~--~~~~~~~~l~~l~~~l~~~---~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~l~~~l~~~~~~~~~~~~~r~~a 294 (1069)
+ .. -.+.+|.++..+. ++ +..++..++.+|..++......-...+. ..++.+...+.. .+...+..|
T Consensus 136 ~~~I~v~~GaVp~Lv~lL~----~gsk~d~~L~~~Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS--~d~~lQ~eA 209 (2102)
T PLN03200 136 GSKIFSTEGVVPSLWDQLQ----PGNKQDKVVEGLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLSS--GNSDAQANA 209 (2102)
T ss_pred hhhhhhhcCChHHHHHHHh----CCchhhHHHHHHHHHHHHHHhcCccchHHHHHHcCCHHHHHHHHcC--CCHHHHHHH
Confidence 1 10 1234555555444 33 2224455567787887755433222222 366667776653 357778888
Q ss_pred HHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCcchhhHHHHHHHHHHHcC----
Q 001487 295 IEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALG---- 370 (1069)
Q Consensus 295 ~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~---- 370 (1069)
..++..++.. .+.....+ .-...+|.+++++....+ ...+..|..+|..++..-.
T Consensus 210 a~aLa~Lass---~ee~~~aV--IeaGaVP~LV~LL~sg~~----------------~~VRE~AA~AL~nLAs~s~e~r~ 268 (2102)
T PLN03200 210 ASLLARLMMA---FESSISKV--LDAGAVKQLLKLLGQGNE----------------VSVRAEAAGALEALSSQSKEAKQ 268 (2102)
T ss_pred HHHHHHHHcC---ChHHHHHH--HHCCCHHHHHHHHccCCC----------------hHHHHHHHHHHHHHhcCCHHHHH
Confidence 8888777763 11111110 112357788887753211 1123456666766664210
Q ss_pred ---CccchHHHHHHHHHh----hcC-CChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCC-ChhHHHHHHHH
Q 001487 371 ---GNTIVPVASEQLPAY----LAA-PEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDP-HPRVRWAAINA 441 (1069)
Q Consensus 371 ---~~~~~~~l~~~l~~~----l~~-~~~~~r~aal~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~d~-~~~vr~~a~~~ 441 (1069)
....+|.++..+... +++ .+...++.|.++|+.++.+. ..+++.+...+++. +..+...++|+
T Consensus 269 ~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~--------~~ll~~L~~ll~s~rd~~~~ada~gA 340 (2102)
T PLN03200 269 AIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGM--------SALILYLGELSESPRSPAPIADTLGA 340 (2102)
T ss_pred HHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCc--------hhhHHHHHHhhcccchHHHHHHHHhh
Confidence 012344444443210 111 12335788999999999775 34666666666544 44556677888
Q ss_pred HHHhHhhhchhHHh-hhh--hhhHHHHHhhccCCCChh-HHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCCh
Q 001487 442 IGQLSTDLGPDLQN-QFH--PQVLPALAGAMDDFQNPR-VQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQ 517 (1069)
Q Consensus 442 l~~l~~~~~~~~~~-~~~--~~il~~l~~~l~~~~~~~-v~~~a~~al~~l~~~~~~~~~~~~l~~i~~~l~~~l~~~~~ 517 (1069)
+..+...+...... ..+ ..+.+.|.+.+++ +++. ++..+..+|..+..+..-.... +-....+.|+.++...+.
T Consensus 341 Layll~l~d~~~~~~~~i~~~~v~~~LV~Llr~-k~p~~vqe~V~eALasl~gN~~l~~~L-~~~daik~LV~LL~~~~~ 418 (2102)
T PLN03200 341 LAYALMVFDSSAESTRAFDPTVIEQILVKLLKP-RDTKLVQERIIEALASLYGNAYLSRKL-NHAEAKKVLVGLITMATA 418 (2102)
T ss_pred HHHHHHhcCCchhhhhhccccccHHHHHHHhCC-CCCchhHHHHHHHHHHhcCChHHHHHH-HhccchhhhhhhhccCCH
Confidence 88876554332201 111 2456888899988 5555 5778888886655443111010 113456778888998899
Q ss_pred hHHHHHHHHHHHHHHhhHhhhHhhH-hhhhHHHHHHHhhccCccccchhhHHHHHHHHHHHhhChhhhhhhHHHHHHHHH
Q 001487 518 MVQEGALTALASVADSSQEHFQKYY-DAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLM 596 (1069)
Q Consensus 518 ~v~~~al~~l~~l~~~~~~~~~~~~-~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~ 596 (1069)
+++..+..++..++..-.+...-.. ...+|.|.+.|.+. ....+..+..+++.++..-...+-.---...++.+.
T Consensus 419 evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~----s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV 494 (2102)
T PLN03200 419 DVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLS----SEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLV 494 (2102)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCC----CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHH
Confidence 9999999999999866443322222 23678888888763 234667778888888653221111000123345555
Q ss_pred HHhcCCCCCCCchhhHHHHHHHHHHHHhcCCcccch--hhhhHHHHHhcccCCCccccCCCCccccccCCCcccchhhcC
Q 001487 597 SLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYM--SVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLG 674 (1069)
Q Consensus 597 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l--~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (1069)
++..+ .+..+++.+..++++++.. .++....+ ...+|.+++.+...
T Consensus 495 ~LL~s---~~~~iqeeAawAL~NLa~~-~~qir~iV~~aGAIppLV~LL~sg---------------------------- 542 (2102)
T PLN03200 495 QLLET---GSQKAKEDSATVLWNLCCH-SEDIRACVESAGAVPALLWLLKNG---------------------------- 542 (2102)
T ss_pred HHHcC---CCHHHHHHHHHHHHHHhCC-cHHHHHHHHHCCCHHHHHHHHhCC----------------------------
Confidence 54432 2345777888888888763 23333334 24677777777421
Q ss_pred CceeeeccchHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHhhccCCcCChHHHHHHHHhHHHHHHHHHHHHHcCCCC
Q 001487 675 DKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAP 754 (1069)
Q Consensus 675 ~~~~~v~~~~~~~k~~a~~~l~~l~~~~~~~~~p~~~~~~~~l~~~l~~~~~~~ir~~a~~~l~~l~~~~~~~~~~~~~~ 754 (1069)
..+.|..|+.+|..+....... .++.++.++... ++.++..++.++++++......
T Consensus 543 ---------d~~~q~~Aa~AL~nLi~~~d~~-------~I~~Lv~LLlsd-d~~~~~~aL~vLgnIlsl~~~~------- 598 (2102)
T PLN03200 543 ---------GPKGQEIAAKTLTKLVRTADAA-------TISQLTALLLGD-LPESKVHVLDVLGHVLSVASLE------- 598 (2102)
T ss_pred ---------CHHHHHHHHHHHHHHHhccchh-------HHHHHHHHhcCC-ChhHHHHHHHHHHHHHhhcchh-------
Confidence 0234677888898887643222 223344445433 6788888999999887643210
Q ss_pred CCCHHHHHHH--HHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHH-HHHHHHHHHHHhhHHHHHH
Q 001487 755 GRNESYVKQL--SDFIIPALVEALHKEPDTEICASMLDSLNECIQISGPLLDEGQVRSIV-DEIKQVITASSSRKRERAE 831 (1069)
Q Consensus 755 ~~~~~~~~~~--~~~i~~~l~~~~~~~~~~~v~~~~l~~l~~~i~~~~~~~~~~~~~~~~-~~l~~~l~~~~~~~~~~~~ 831 (1069)
+..... ....+|.|.+.+..+ +..+...+...+..+... .++....++ ....+.+...+..
T Consensus 599 ----d~~~~g~~~~ggL~~Lv~LL~sg-s~~ikk~Aa~iLsnL~a~-----~~d~~~avv~agaIpPLV~LLss------ 662 (2102)
T PLN03200 599 ----DLVREGSAANDALRTLIQLLSSS-KEETQEKAASVLADIFSS-----RQDLCESLATDEIINPCIKLLTN------ 662 (2102)
T ss_pred ----HHHHHhhhccccHHHHHHHHcCC-CHHHHHHHHHHHHHHhcC-----ChHHHHHHHHcCCHHHHHHHHhc------
Confidence 001110 123567777777765 455665565555554432 222222111 1111222222110
Q ss_pred HhcCCCCChHhhhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhch-hhhHHH-HHhhhhhhhcCCCCHHHHHHHHHHHHHH
Q 001487 832 RAKAEDFDAEESELIKEENEQEEEVFDQVGEILGTLIKTFKAAF-LPFFDE-LSSYLTPMWGKDKTAEERRIAICIFDDV 909 (1069)
Q Consensus 832 ~~~~e~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~-~~~~~~-l~~~l~~~l~~~~~~~~r~~a~~~l~~l 909 (1069)
.+.++...++..++.+.....+.- ..++.. .+|.+++++ ++.+...+..++.+|+.+
T Consensus 663 --------------------~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL-~~~d~~v~e~Al~ALanL 721 (2102)
T PLN03200 663 --------------------NTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLA-KSSSIEVAEQAVCALANL 721 (2102)
T ss_pred --------------------CChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHH-hCCChHHHHHHHHHHHHH
Confidence 112345567888888886443332 223443 677788888 456778899999999999
Q ss_pred HhHhhhhhhhhhHhHHHHHHhhccCCChhHHHhhhHHHHHHHhhcCC-C-chHHHHH--HHHHHHHhhcCCCCCChhhhh
Q 001487 910 AEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGS-V-VKPLVGE--ALSRLNVVIRHPNALQPENLM 985 (1069)
Q Consensus 910 ~~~~~~~~~~~~~~l~~~ll~~l~~~~~~vr~~a~~~lg~l~~~~~~-~-~~~~~~~--~l~~L~~~l~~~~~~~~~~~~ 985 (1069)
+........-.-...++.++..+++.++.+|++|+++|..++...+. . +..++.. .+..|...|...+.. ..
T Consensus 722 l~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~----~~ 797 (2102)
T PLN03200 722 LSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLD----SS 797 (2102)
T ss_pred HcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcc----hh
Confidence 88764432112356689999999999999999999999999998872 2 3333322 455666677665421 12
Q ss_pred hHHHHHHHHHHHHhhc-CCCC---CHh------hHHHHHHhhCCCCCcHHHHHHHHHHHHHHHhhcCCcccCc
Q 001487 986 AYDNAVSALGKICQFH-RDSI---DAA------QVVPAWLNCLPIKGDLIEAKIVHEQLCSMVERSDSDLLGP 1048 (1069)
Q Consensus 986 ~~~~~~~~l~~i~~~~-~~~~---~~~------~~~~~~l~~lp~~~d~~~~~~~~~~l~~l~~~~~~~~~~~ 1048 (1069)
..-.+..+++.+.+.- .... ++. .=+..+..++ -.+.....+.+++.+-++++ ..|.++|.
T Consensus 798 ~~~~al~~l~~l~~~~~~~~~~~~~~~~~~e~p~~l~~l~~~l-~~~~p~~~~kai~il~~~~~-~~~~~~~~ 868 (2102)
T PLN03200 798 ATSEALEALALLARTKGGANFSHPPWAVLAEVPSSLEPLVRCL-AEGHPLVQDKAIEILSRLCR-DQPVVLGD 868 (2102)
T ss_pred hHHHHHHHHHHHHhhcccCCCCCCchhhHHhccCchHHHHHHH-HcCChHHHHHHHHHHHHHhc-cChhHHHH
Confidence 2223667777777742 1111 111 1122232333 12344567789999999984 55555553
No 25
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.79 E-value=2.6e-14 Score=149.57 Aligned_cols=643 Identities=15% Similarity=0.194 Sum_probs=373.7
Q ss_pred ChHHHHHHHHHhcCCChHHHHHHHHHHHHhhh-cCchHHHHHHHHHHcc-CCCHHHHHHHHHHHHhhcccCCCC--ccc-
Q 001487 20 DSAPFETLISHLMSTSNEQRSEAELLFNLCKQ-QDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDDSF--LWP- 94 (1069)
Q Consensus 20 ~~~~l~~ll~~~~s~d~~~r~~A~~~L~~~~~-~~p~~~~~~L~~il~~-~~~~~~R~~a~i~L~~~i~~~~~~--~w~- 94 (1069)
+.-.+..+|-...+++..-|..+...|..=.- .-|.....-++-++-+ +-+.+-|++-.-++.+++..-+.- -+.
T Consensus 166 ~Er~v~rllLkvKNG~~~mR~~~lRiLtdkav~fg~~~vfnkvLp~lm~r~LeDqerhl~vk~idr~Ly~lddl~~pyvh 245 (975)
T COG5181 166 DERDVYRLLLKVKNGGKRMRMEGLRILTDKAVNFGAAAVFNKVLPMLMSRELEDQERHLVVKLIDRLLYGLDDLKVPYVH 245 (975)
T ss_pred chHhHHHHHhhcccCCchhhHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhhhhhHhHHHHHHHHHHhccccccccee
Confidence 44567777888889999999999988865332 1233333444444443 555666777777776666542100 000
Q ss_pred ---------CCCHHHH-----HHHHHHHHHH--H-------h---hcchhhHHHHHHHHHHHHHhcccCCCCchhhHHHH
Q 001487 95 ---------RLSLHTQ-----SSLKSMLLQS--I-------Q---LESAKSISKKLCDTVSELASNILPENGWPELLPFM 148 (1069)
Q Consensus 95 ---------~l~~~~~-----~~i~~~ll~~--l-------~---~e~~~~vr~~~~~~i~~i~~~~~~~~~w~~ll~~l 148 (1069)
.++++.+ .+|...|... + . ...++-+|+..+.+.+.+++.. ..++++|++
T Consensus 246 kILvVv~pllided~~~r~~g~eii~nL~~~~Gl~~~vs~mrpDi~~~deYVRnvt~ra~~vva~al----gv~~llpfl 321 (975)
T COG5181 246 KILVVVGPLLIDEDLKRRCMGREIILNLVYRCGLGFSVSSMRPDITSKDEYVRNVTGRAVGVVADAL----GVEELLPFL 321 (975)
T ss_pred eEEEEeeccccCccHHHhcccHHHHHHHHHHhccceeeeeccCCcccccHHHHHHHHHHHHHHHHhh----CcHHHHHHH
Confidence 0122221 1111112111 1 0 0136679999999999999874 468999999
Q ss_pred HHhhcCC-ChhHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhCCcchHhHHHh
Q 001487 149 FQCVSSD-SVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQD 227 (1069)
Q Consensus 149 ~~~~~~~-~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ 227 (1069)
.....|. ++..|+.++.+...|++..+....+++..++..+..++.|. +..||..+..+++.+++.. .+...+.|..
T Consensus 322 ~a~c~SrkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~~~l~D~-~~~vRi~tA~alS~lae~~-~Pygie~fd~ 399 (975)
T COG5181 322 EALCGSRKSWEARHTGIRIAQQICELLGRSRLSHLGPLLKCISKLLKDR-SRFVRIDTANALSYLAELV-GPYGIEQFDE 399 (975)
T ss_pred HHHhcCccchhhhchhhHHHHHHHHHhCccHHhhhhhHHHHHHHHhhcc-ceeeeehhHhHHHHHHHhc-CCcchHHHHH
Confidence 9998876 88999999999999999988887789999999999999997 8899999999999998864 2333444544
Q ss_pred hHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHcc-ccHHHHHhHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHhhh
Q 001487 228 LLPLMMRTLTESLNNGNEATAQEALELLIELAGT-EPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARE 306 (1069)
Q Consensus 228 ~~~~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~~-~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~ 306 (1069)
.+. .|++-.+.........-+.+.+.++-. .|+...-+..+....++..+..+ +++.+...+.+...+.....
T Consensus 400 vl~----pLw~g~~~hrgk~l~sfLkA~g~iiplm~peYa~h~tre~m~iv~ref~sp--deemkk~~l~v~~~C~~v~~ 473 (975)
T COG5181 400 VLC----PLWEGASQHRGKELVSFLKAMGFIIPLMSPEYACHDTREHMEIVFREFKSP--DEEMKKDLLVVERICDKVGT 473 (975)
T ss_pred HHH----HHHHHHHhcCCchHHHHHHHhccccccCChHhhhhhHHHHHHHHHHHhCCc--hhhcchhHHHHHHHHhccCC
Confidence 333 333322211111112222222222211 12222222233444444443322 23333222222222222111
Q ss_pred ccchhhhcchhhHHHHHHHHHHhhcCC--CCC-ccccc-------------CCC------CCccccCCcch-hhHHHHHH
Q 001487 307 RAPGMMRKLPQFINRLFAILMSMLLDI--EDD-PLWHS-------------AET------EDEDAGESSNY-SVGQECLD 363 (1069)
Q Consensus 307 ~~~~~~~~~~~~~~~l~~~l~~~l~~~--~~~-~~~~~-------------~~~------e~ed~~~~~~~-~~a~~~l~ 363 (1069)
..|. .+-.++.|.++...-.. ..| ..+.. +.. +.. .|+..++ +.+..+..
T Consensus 474 ~tp~------~lr~~v~pefF~~fw~rr~A~dr~~~k~v~~ttvilAk~~g~~~v~~kil~~~-~De~ep~r~m~a~~vs 546 (975)
T COG5181 474 DTPW------KLRDQVSPEFFSPFWRRRSAGDRRSYKQVVLTTVILAKMGGDPRVSRKILEYY-SDEPEPYRKMNAGLVS 546 (975)
T ss_pred CCHH------HHHHhhcHHhhchHHHhhhcccccccceeehhHHHHHHHcCChHHHHHHHhhc-cCCcchhhhhhhHHHH
Confidence 1111 01122333333221000 000 00000 000 000 0011222 33444555
Q ss_pred HHHHHcCCccchH----HHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHH
Q 001487 364 RLAIALGGNTIVP----VASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAI 439 (1069)
Q Consensus 364 ~l~~~~~~~~~~~----~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~d~~~~vr~~a~ 439 (1069)
++...+|...+-. .++..+...++.++-.+. -.+.+++.+.....-...+|+..++..++..|+++.|.+|..|+
T Consensus 547 ri~~~lg~~~~dErleerl~d~il~Afqeq~~t~~-~il~~f~tv~vsl~~r~kp~l~~ivStiL~~L~~k~p~vR~~aa 625 (975)
T COG5181 547 RIFSRLGRLGFDERLEERLYDSILNAFQEQDTTVG-LILPCFSTVLVSLEFRGKPHLSMIVSTILKLLRSKPPDVRIRAA 625 (975)
T ss_pred HHHHhcccccccHHHHHHHHHHHHHHHHhcccccc-EEEecccceeeehhhccCcchHHHHHHHHHHhcCCCccHHHHHH
Confidence 5555554322222 222222222222211100 11223333332332344589999999999999999999999999
Q ss_pred HHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCChhH
Q 001487 440 NAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMV 519 (1069)
Q Consensus 440 ~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~i~~~l~~~l~~~~~~v 519 (1069)
...+.++..+...-....+..+=..|.+.+.. ..++|-.....|+..+....+-..+.|-...|+|.+...+.+...++
T Consensus 626 dl~~sl~~vlk~c~e~~~l~klg~iLyE~lge-~ypEvLgsil~Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv 704 (975)
T COG5181 626 DLMGSLAKVLKACGETKELAKLGNILYENLGE-DYPEVLGSILKAICSIYSVHRFRSMQPPISGILPSLTPILRNKHQKV 704 (975)
T ss_pred HHHHHHHHHHHhcchHHHHHHHhHHHHHhcCc-ccHHHHHHHHHHHHHHhhhhcccccCCchhhccccccHhhhhhhHHH
Confidence 99998887765322123344455556788888 78999899999999888887766788999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhHhhhHh--hHhhhhHHHHHHHhhccCccccchhhHHHHHHHHHHHhhChhhhhhhHHHHHHHHHH
Q 001487 520 QEGALTALASVADSSQEHFQK--YYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMS 597 (1069)
Q Consensus 520 ~~~al~~l~~l~~~~~~~~~~--~~~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~ 597 (1069)
....+..+|.++...++...+ +.. |.=-|...++.. ..++|..|-+++|.+++++|++. ++..+++
T Consensus 705 ~~nti~lvg~I~~~~peyi~~rEWMR-IcfeLvd~Lks~----nKeiRR~A~~tfG~Is~aiGPqd-------vL~~Lln 772 (975)
T COG5181 705 VANTIALVGTICMNSPEYIGVREWMR-ICFELVDSLKSW----NKEIRRNATETFGCISRAIGPQD-------VLDILLN 772 (975)
T ss_pred hhhHHHHHHHHHhcCcccCCHHHHHH-HHHHHHHHHHHh----hHHHHHhhhhhhhhHHhhcCHHH-------HHHHHHh
Confidence 999999999999887764332 332 322333334432 34588899999999999999764 4444444
Q ss_pred -HhcCCCCCCCchhhHHHHHHHHHHHHhcCCcccchhhhhHHHHHhcccCCCccccCCCCccccccCCCcccchhhcCCc
Q 001487 598 -LQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDK 676 (1069)
Q Consensus 598 -l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (1069)
+..+ ++..|.+..-+++-+++.+|. | .++|.++.--.. |+
T Consensus 773 nLkvq----eRq~RvctsvaI~iVae~cgp----f--sVlP~lm~dY~T-Pe---------------------------- 813 (975)
T COG5181 773 NLKVQ----ERQQRVCTSVAISIVAEYCGP----F--SVLPTLMSDYET-PE---------------------------- 813 (975)
T ss_pred cchHH----HHHhhhhhhhhhhhhHhhcCc----h--hhHHHHHhcccC-ch----------------------------
Confidence 2211 112233333345556666553 2 345555432211 11
Q ss_pred eeeeccchHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHhhccCCcCChHHHHHHHHhHHHHHHH
Q 001487 677 RIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRS 743 (1069)
Q Consensus 677 ~~~v~~~~~~~k~~a~~~l~~l~~~~~~~~~p~~~~~~~~l~~~l~~~~~~~ir~~a~~~l~~l~~~ 743 (1069)
...+..-+++++.+.+..++.-..|+..+.|.+-..+.|. ++.-|+.|...+.+|...
T Consensus 814 --------~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAltDr-D~vhRqta~nvI~Hl~Ln 871 (975)
T COG5181 814 --------ANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTDR-DPVHRQTAMNVIRHLVLN 871 (975)
T ss_pred --------hHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhccc-chHHHHHHHHHHHHHhcC
Confidence 1122334666888888888888889999999998888874 778899999988887653
No 26
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=99.78 E-value=2.7e-13 Score=149.90 Aligned_cols=547 Identities=14% Similarity=0.140 Sum_probs=301.4
Q ss_pred CChHHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc-CCCHHHHHHHHHHHHhhcccCCCCcccC--
Q 001487 19 PDSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDDSFLWPR-- 95 (1069)
Q Consensus 19 ~~~~~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~~p~~~~~~L~~il~~-~~~~~~R~~a~i~L~~~i~~~~~~~w~~-- 95 (1069)
|+.-.....+...+++|+..++.||+.|+++++ +++ |...|..+..+ ..+-.+|..|++.+||.|.++ |..
T Consensus 1 M~~~~vv~~~~~aqs~~p~s~k~AE~~Lrqwe~-q~g-F~~kL~~I~~~~~~~m~lR~~a~i~fkn~I~~~----W~~~~ 74 (947)
T COG5657 1 MEDLPVVKQLDLAQSPDPPSVKCAEERLRQWEK-QHG-FALKLLSINLSAFNSMSLRWAALIQFKNYIDKH----WREEN 74 (947)
T ss_pred CCchHHHHHHHhhcCCCCchHhhHHHHHHhhhc-ccc-HHHHHHHHHhccccchhHHHHHHHHHHhhHHHH----hhhhc
Confidence 333445566778899999999999999999999 566 56888888876 577899999999999999998 763
Q ss_pred ---CCHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCCChhHHHHHHHHHHHhhh
Q 001487 96 ---LSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQ 172 (1069)
Q Consensus 96 ---l~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~ 172 (1069)
+.++....||..++.++.+ .+..+..+.+.+++.||+.++| +.||+++|.+...+++.|...-.+.+.++..+.+
T Consensus 75 ~~~i~p~e~v~IR~~l~~lii~-s~n~l~iq~a~avs~IA~~DfP-deWpTL~~DL~~~Ls~~D~~tn~~~L~~~h~Ifk 152 (947)
T COG5657 75 GNSILPDENVLIRDELFSLIIS-SSNQLQIQNALAVSRIARLDFP-DEWPTLVPDLLSLLSEKDMVTNENSLRVLHHIFK 152 (947)
T ss_pred ccCCCCccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHHhccCc-ccchhHHHHHHhhhcccchHHHHHHHHHHHHHHH
Confidence 4555556999999999997 5677777899999999999999 9999999999999999887777788888888888
Q ss_pred hhhhhcc------hhHHHHHHHHHHhhcCC-CChHHHH-----------HHHHHHHHHHHhhCCcchHhHHHhhHHHHHH
Q 001487 173 YIGDTLT------PHLKHLHAVFLNCLTNS-NNPDVKI-----------AALNAVINFIQCLTSSADRDRFQDLLPLMMR 234 (1069)
Q Consensus 173 ~~~~~~~------~~~~~l~~~l~~~l~~~-~~~~vr~-----------~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~ 234 (1069)
...+.++ ...+.+.+.+.+.+... ..+..+. .+++.+..+... .-...++.+.++++..+.
T Consensus 153 ~~r~l~Rsd~lf~ei~p~L~~~l~pfl~~~~~~~s~~~~~~~~llslfqv~L~~~r~~~~~-~~qdi~eFfEd~l~~~m~ 231 (947)
T COG5657 153 RLRRLFRSDALFLEIAPVLLSILCPFLFSSAYFWSMSENLDESLLSLFQVCLKLIRRYYDL-GFQDIPEFFEDNLDKFME 231 (947)
T ss_pred HHhhhhccHHHHHHHHHHHHHHHHHHHHhccchhHHhhcchhhHHHHHHHHHHHHHHHHHh-cCCChhHHHHHHHHHHHH
Confidence 7654321 12222222222222111 0111111 133333333322 111233556677777777
Q ss_pred HHHHHHhCCChHHHH-------------HHHHHHHHHHccccHHHHHhHHHHHHHHHHHhcC---CCcchHHHHHHHHHH
Q 001487 235 TLTESLNNGNEATAQ-------------EALELLIELAGTEPRFLRRQLVDVVGSMLQIAEA---ESLEEGTRHLAIEFV 298 (1069)
Q Consensus 235 ~l~~~l~~~~~~~~~-------------~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~~~~---~~~~~~~r~~a~~~l 298 (1069)
.+...+....+..+. ..+..+.-+...++..+.+++-+.++.++..+.. +..-+.+...++.++
T Consensus 232 ~F~klls~~~~~lq~~~le~~~~~~l~~~i~e~f~ly~t~yp~~it~li~dfv~~vw~~lttit~~~~~d~Lv~k~l~~l 311 (947)
T COG5657 232 HFCKLLSYSNPVLQKDCLEDCVYFKLKGSICEIFNLYTTKYPEVITYLIYDFVEIVWNLLTTITRPYIRDYLVSKSLTVL 311 (947)
T ss_pred HHHHHHhhcchhhhhhhcccceeeeecccHHHHHHHHhhccHHHhhHHHHHHHHHHHHHHHhhcCccccchhhhhHHHHH
Confidence 766666543333333 2345555555667788887766777666665432 112233344455555
Q ss_pred HHHHHh--hhccchhhhcchhhHHHHHHHHHHhh--cCCCCCcccccCCCCC--c---cccCCcchhhHHHHHHHHHHHc
Q 001487 299 ITLAEA--RERAPGMMRKLPQFINRLFAILMSML--LDIEDDPLWHSAETED--E---DAGESSNYSVGQECLDRLAIAL 369 (1069)
Q Consensus 299 ~~l~~~--~~~~~~~~~~~~~~~~~l~~~l~~~l--~~~~~~~~~~~~~~e~--e---d~~~~~~~~~a~~~l~~l~~~~ 369 (1069)
....+. .+..+.......+.+.+++..++... ...+|-++|..++.+. | .+-+...+..+.+.+..+...+
T Consensus 312 ~~v~k~~irk~~e~l~n~~~~~~~~lvd~l~l~n~~lreed~E~~~ddp~eyire~s~~dye~~vr~~~~~~l~~~f~~~ 391 (947)
T COG5657 312 INVIKYPIRKTAEVLSNVSENLINNLVDLLILPNLILREEDLEEWEDDPLEYIREQSKTDYEVNVRPCIENELKDLFDVF 391 (947)
T ss_pred HHhhccccHHHHHHHHHHHHHHHHHHHHHHhhhccccCcccccccccCHHHHHHhhccccchhhhhHHHHHHHHHHHHHH
Confidence 444441 00111111111223334444443321 1233344565443210 0 0112223445666666666666
Q ss_pred CCccchHHHHHHHHHhhcCCCh---HHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCC----ChhHHHH-HHHH
Q 001487 370 GGNTIVPVASEQLPAYLAAPEW---QKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDP----HPRVRWA-AINA 441 (1069)
Q Consensus 370 ~~~~~~~~l~~~l~~~l~~~~~---~~r~aal~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~d~----~~~vr~~-a~~~ 441 (1069)
| +-+.+++...+.+....++. ..+.-++.++..+....-..+....+..-......+.++ +.+++.. +...
T Consensus 392 ~-~i~~~~~~~~ie~~~t~P~~~d~~~~~~a~~a~~g~g~~av~~~~~~v~~~~~~~~pd~~s~~~~~~~ri~~~~i~~i 470 (947)
T COG5657 392 G-RIAVGHELTVIESEATTPNILDEARQLFAAYASFGLGVEAVNRMVDFVKFLGSIIYPDLLSPNEIIHLRILRSRIAYI 470 (947)
T ss_pred h-hHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhcCccccCcccCceeEEehhccchh
Confidence 6 56677777777777776621 122222222222221111112222222222222223232 3343322 2222
Q ss_pred HHHhHhhhchh--HHhhhhhhhHHHHHhhccC-CCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCC-h
Q 001487 442 IGQLSTDLGPD--LQNQFHPQVLPALAGAMDD-FQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGK-Q 517 (1069)
Q Consensus 442 l~~l~~~~~~~--~~~~~~~~il~~l~~~l~~-~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~i~~~l~~~l~~~~-~ 517 (1069)
+..-......+ ...-+..+.+........+ ..--.+|.+....+....-.-. ...+-+++++-.+.+...++. .
T Consensus 471 ~~~r~~l~~~~~~~~~fl~~~~F~~yt~~~id~~~lLT~~~a~~t~~~~~n~~~~--~~~~~lenl~~lvl~~~as~~~~ 548 (947)
T COG5657 471 LTFRNQLDSSELSESKFLASQFFVNYTTACIDAVVLLTTREAYSTIFDDWNFSVC--SKIGLLENLILLVLSLMASPSSL 548 (947)
T ss_pred eechhhhhhhhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcccccc--cccccHHHHHHHHHHhcCCcchh
Confidence 21111111111 0000111111112211222 0112344444444444332221 233566777766677666543 5
Q ss_pred hHHHHHHHHHHHHHHhhHhhhHhhHhhhhHHHHHHHhhcc-CccccchhhHHHHHHHHHHH
Q 001487 518 MVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNAT-DKSNRMLRAKSMECISLVGM 577 (1069)
Q Consensus 518 ~v~~~al~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~-~~~~~~lr~~a~~~l~~l~~ 577 (1069)
..+...+.++++++...++.+.|..+.+++.+.+++.... ++....+-...++.++.++.
T Consensus 549 ~e~~~ll~~i~rii~~~~~~i~pl~~~il~~L~~lv~~~~knps~p~~~h~~fe~I~al~~ 609 (947)
T COG5657 549 EEREFLLQLISRIIIIDPELIAPLGSEILQLLDNLVEINAKNPSNPQFAHYTFEDIGALVF 609 (947)
T ss_pred HHHHHHHHHHHHHHHhCHHhhhhhHHHHHHHHHHHHHHHccCCccHHHHHHHHHHHHHHHH
Confidence 6788999999999999999999988999999988876532 22222233344556665554
No 27
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.78 E-value=5.3e-15 Score=158.03 Aligned_cols=527 Identities=15% Similarity=0.168 Sum_probs=347.8
Q ss_pred CCCHHHHHHHHHHHHhhcccCCCCcccCCCHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCC-chhhHH
Q 001487 68 SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENG-WPELLP 146 (1069)
Q Consensus 68 ~~~~~~R~~a~i~L~~~i~~~~~~~w~~l~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~~~~-w~~ll~ 146 (1069)
+..+.+|..-.--....+..+ ..++...+++..-+.|++.+...+|+......+..+.+....+. --.++.
T Consensus 28 d~~~~v~~~ml~a~~~~~~~~--------~~~~v~~l~~~~~~~l~~~~~~~~~~~~~v~~~~~a~~~~~~d~~~~~~~~ 99 (569)
T KOG1242|consen 28 DRRIDVRGNMLEAGEAAINQH--------GDQNVLNLKPCFEQRLNSLHNDNLRNNVVVLEGTLAFHLQIVDPRPISIIE 99 (569)
T ss_pred CcchhhHHhHHHHHHHHHHhh--------hHHHHHHHHHHHHHHhccchhHHHhhhhHHHHHHHHHhccccCcchhHHHH
Confidence 344555554444444444433 23456778888888999888888999988888888887544322 235677
Q ss_pred HHHHhhcCCChhHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhCCcchHhHHH
Q 001487 147 FMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQ 226 (1069)
Q Consensus 147 ~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ 226 (1069)
.+.+.+..+.+.++.....++..+....... ....+.+.+.+.++.. ...-|..+...+..++... ....+.
T Consensus 100 ~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~---~~~~~l~~l~~ll~~~-~~~~~~~aa~~~ag~v~g~----~i~~~~ 171 (569)
T KOG1242|consen 100 ILLEELDTPSKSVQRAVSTCLPPLVVLSKGL---SGEYVLELLLELLTST-KIAERAGAAYGLAGLVNGL----GIESLK 171 (569)
T ss_pred HHHHhcCCCcHHHHHHHHHHhhhHHHHhhcc---CHHHHHHHHHHHhccc-cHHHHhhhhHHHHHHHcCc----HHhhhh
Confidence 7777778888888888888888776554332 3455566666777765 6777887777777666543 222222
Q ss_pred hhHHHHHHHHHHHHhCCChHH-HHHHHHHHHHHHccccHHHHHhHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHhh
Q 001487 227 DLLPLMMRTLTESLNNGNEAT-AQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEAR 305 (1069)
Q Consensus 227 ~~~~~~l~~l~~~l~~~~~~~-~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~ 305 (1069)
+. .++..+...+++..... |..+.-++.......+..+.||+..+++.++.... +....+|..+......+.++
T Consensus 172 ~~--~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~--d~~~~Vr~Aa~~a~kai~~~- 246 (569)
T KOG1242|consen 172 EF--GFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFG--DKINKVREAAVEAAKAIMRC- 246 (569)
T ss_pred hh--hHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhh--ccchhhhHHHHHHHHHHHHh-
Confidence 22 46666676666554433 33455555555566667777888888887776653 34567777776655555441
Q ss_pred hccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCcchhhHHHHHHHHHHHcCCccchHHHHHHHHHh
Q 001487 306 ERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAY 385 (1069)
Q Consensus 306 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~ 385 (1069)
.+ . ++.+.++|.++.-+..
T Consensus 247 --~~-------~---------------------------------------------------~aVK~llpsll~~l~~- 265 (569)
T KOG1242|consen 247 --LS-------A---------------------------------------------------YAVKLLLPSLLGSLLE- 265 (569)
T ss_pred --cC-------c---------------------------------------------------chhhHhhhhhHHHHHH-
Confidence 00 0 0012333333333322
Q ss_pred hcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHH
Q 001487 386 LAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPAL 465 (1069)
Q Consensus 386 l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l 465 (1069)
..|+.+.+++..+|.++...+..+...+++++|.+.+.|.|.+|.||.++..|+..++..... +-+..++|.+
T Consensus 266 ---~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN----~dI~~~ip~L 338 (569)
T KOG1242|consen 266 ---AKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDN----PDIQKIIPTL 338 (569)
T ss_pred ---HhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhcc----HHHHHHHHHH
Confidence 279999999999999999999999999999999999999999999999999999999887653 4478899999
Q ss_pred HhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhh--HhhhHhhHh
Q 001487 466 AGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSS--QEHFQKYYD 543 (1069)
Q Consensus 466 ~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~i~~~l~~~l~~~~~~v~~~al~~l~~l~~~~--~~~~~~~~~ 543 (1069)
+.++.+ ++..+.+ +...|.. ..+-...-.|-+.-++|.+.+.++..+..++..+...+++++.-. +..+.||++
T Consensus 339 ld~l~d-p~~~~~e-~~~~L~~--ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~ 414 (569)
T KOG1242|consen 339 LDALAD-PSCYTPE-CLDSLGA--TTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLP 414 (569)
T ss_pred HHHhcC-cccchHH-HHHhhcc--eeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHH
Confidence 999999 6644432 3233221 111112234778889999999999999999999999999999988 668899999
Q ss_pred hhhHHHHHHHhhccCccccchhhHHHHHHHHHHHhhChhhhhhhHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHHH
Q 001487 544 AVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKC 623 (1069)
Q Consensus 544 ~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 623 (1069)
.++|-+...+.+. . .++|..+..+++.+...+|...|....+++.+.+..-.. ..-+. .+...++..
T Consensus 415 ~Llp~lk~~~~d~-~---PEvR~vaarAL~~l~e~~g~~~f~d~~p~l~e~~~~~k~------~~~~~---g~aq~l~ev 481 (569)
T KOG1242|consen 415 SLLPGLKENLDDA-V---PEVRAVAARALGALLERLGEVSFDDLIPELSETLTSEKS------LVDRS---GAAQDLSEV 481 (569)
T ss_pred HHhhHHHHHhcCC-C---hhHHHHHHHHHHHHHHHHHhhcccccccHHHHhhccchh------hhhhH---HHhhhHHHH
Confidence 9999999988664 3 457888899999999999977773333444443322111 00122 233445555
Q ss_pred hcCCcccchhhhhHHHHHhcccCCCccccCCCCccccccCCCcccchhhcCCceeeeccchHHHHHHHHHHHHHHHHHhh
Q 001487 624 LGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELK 703 (1069)
Q Consensus 624 ~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~a~~~l~~l~~~~~ 703 (1069)
++..-..++..+++.++......-. + + .++.+.+ ..+.-+-...+
T Consensus 482 l~~~~v~~~~~~~~~~~a~~~~~~~----------------~--~----------~~~dg~~-------~~~~~lp~~~~ 526 (569)
T KOG1242|consen 482 LAGLGVEKVEDILPEILANASSVLI----------------D--E----------RIRDGVI-------WLFYLLPYIFG 526 (569)
T ss_pred HhcccchHHHHHHHHHHHHHhhccc----------------h--h----------hhccCee-------ehhhccchhhh
Confidence 5555556777777777766643100 0 0 0011100 01222223346
Q ss_pred hcccccHHHHHHHHhhccCCcCChHHHHHHHHh
Q 001487 704 EGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSA 736 (1069)
Q Consensus 704 ~~~~p~~~~~~~~l~~~l~~~~~~~ir~~a~~~ 736 (1069)
..+.||+.++++.+.+.+.+. ++..|..+.++
T Consensus 527 ~~~~~yi~~i~~~~~k~~ad~-de~~~~~~~~~ 558 (569)
T KOG1242|consen 527 FQFQPYIHEILDEFLKGLADN-DEKGRDTALEA 558 (569)
T ss_pred HHhHHHHHHHHHHHHHHhhhc-CCccccchhhh
Confidence 678999999999988888764 66666555543
No 28
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.74 E-value=3.3e-12 Score=148.11 Aligned_cols=650 Identities=15% Similarity=0.165 Sum_probs=385.6
Q ss_pred hHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhCCcchHhHHHhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHc
Q 001487 181 HLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAG 260 (1069)
Q Consensus 181 ~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~ 260 (1069)
....+...+...+.++ +++.|.+++-.|..++.++.. ........+.+...+.+.+.++|+=.+..+.+-++-+-+
T Consensus 815 ~~~~~~~~l~~~~~s~-nph~R~A~~VWLLs~vq~l~~---~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYe 890 (1702)
T KOG0915|consen 815 RETIILKLLDTLLTSP-NPHERQAGCVWLLSLVQYLGQ---QPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYE 890 (1702)
T ss_pred cHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHhcc---CchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEe
Confidence 3455667777788887 999999999999999998753 233344556677777777776665444444443332211
Q ss_pred cccHHHH-HhHHHHHHHHHHHhcCC--Ccc---------------hHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHH
Q 001487 261 TEPRFLR-RQLVDVVGSMLQIAEAE--SLE---------------EGTRHLAIEFVITLAEARERAPGMMRKLPQFINRL 322 (1069)
Q Consensus 261 ~~~~~~~-~~~~~l~~~l~~~~~~~--~~~---------------~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l 322 (1069)
....-+. ..+..+++.+..- ..+ ..+ +.-.....+=+.+++..- .. +.+
T Consensus 891 lgd~~~k~~LV~sL~~tl~~G-kr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl-~q-----------PdL 957 (1702)
T KOG0915|consen 891 LGDSSLKKSLVDSLVNTLTGG-KRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDL-GQ-----------PDL 957 (1702)
T ss_pred cCCchhHHHHHHHHHHHHhcc-ccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhc-CC-----------hHH
Confidence 1111111 1222333322210 000 000 011122233333444310 01 112
Q ss_pred HHHHHHhhcCCCCCcccccCCCCCccccCCcchhhHHHHHHHHHHHcCC--ccchHHHHHHHHHhhcCCChHHHHHHHHH
Q 001487 323 FAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGG--NTIVPVASEQLPAYLAAPEWQKHHAALIA 400 (1069)
Q Consensus 323 ~~~l~~~l~~~~~~~~~~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~~~~~~~r~aal~~ 400 (1069)
+...++.- ...-.|+ .++=|.--++.++...|. +..++.++|.+.++--||+.+++.+....
T Consensus 958 VYKFM~LA---nh~A~wn-------------Sk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sI 1021 (1702)
T KOG0915|consen 958 VYKFMQLA---NHNATWN-------------SKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSI 1021 (1702)
T ss_pred HHHHHHHh---hhhchhh-------------cccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHH
Confidence 22222211 1111243 222233345555544431 24667788888888889999999999999
Q ss_pred HHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHH
Q 001487 401 LAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAH 480 (1069)
Q Consensus 401 l~~l~~~~~~~~~~~~~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~ 480 (1069)
.+.++......+..|+..|++-++..+.+..++||.++|-++..+...-+.....+.++.++..+++.++| =...||.+
T Consensus 1022 W~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDD-IKEsVR~a 1100 (1702)
T KOG0915|consen 1022 WNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDD-IKESVREA 1100 (1702)
T ss_pred HHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 99999988889999999999999999999999999999999999998765544467889999999999998 66778866
Q ss_pred H---HHHHHHhhhcCCc----ccccCchHHHHHHHHH--HhhcCChhHHHHHHHHHHHHHHhhHhhhHhhHhhhhHHHHH
Q 001487 481 A---ASAVLNFSENCTP----EILTPYLDGIVSKLLV--LLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKA 551 (1069)
Q Consensus 481 a---~~al~~l~~~~~~----~~~~~~l~~i~~~l~~--~l~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~i~~~l~~ 551 (1069)
+ +.++..++-.... ..-...+..++|.|+. .+ +.-.++|..++.++..++++.|..+.||++.++|.|.+
T Consensus 1101 a~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gim-s~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~ 1179 (1702)
T KOG0915|consen 1101 ADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIM-SKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLN 1179 (1702)
T ss_pred HHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcc-cchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHH
Confidence 5 4555555433221 1112456666776665 23 45688999999999999999999999999999999998
Q ss_pred HHhhccCccc---cchh-----hHHHHHHHHHH-HhhC----hhhhhhh-----HHHHHHHHHHHhcCCCCCCCchhhHH
Q 001487 552 ILVNATDKSN---RMLR-----AKSMECISLVG-MAVG----KDKFRDD-----AKQVMEVLMSLQGSQMETDDPTTSYM 613 (1069)
Q Consensus 552 ~l~~~~~~~~---~~lr-----~~a~~~l~~l~-~~~~----~~~~~~~-----~~~i~~~l~~l~~~~~~~~~~~~~~~ 613 (1069)
.+.... +.. -.+| ..+++.+..=+ +..+ -+...+| +.++++.+.++...++. -.-|..+
T Consensus 1180 ~~s~lE-~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVg--l~Tkvg~ 1256 (1702)
T KOG0915|consen 1180 AYSELE-PQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVG--LGTKVGC 1256 (1702)
T ss_pred Hccccc-hHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCC--CCcchhH
Confidence 865421 110 0011 11222211100 0000 0122333 34455555553322221 1235666
Q ss_pred HHHHHHHHHHhcCCcccchhhhhHHHHHhcccCCCccccCCCCccccccCCCcccchhhcCCceeeeccchHHHHHHHHH
Q 001487 614 LQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACN 693 (1069)
Q Consensus 614 ~~~~~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~a~~ 693 (1069)
..+...++..+|.++.||-..++..++..+.... -..|.+-..
T Consensus 1257 A~fI~~L~~r~~~emtP~sgKll~al~~g~~dRN-------------------------------------esv~kafAs 1299 (1702)
T KOG0915|consen 1257 ASFISLLVQRLGSEMTPYSGKLLRALFPGAKDRN-------------------------------------ESVRKAFAS 1299 (1702)
T ss_pred HHHHHHHHHHhccccCcchhHHHHHHhhcccccc-------------------------------------HHHHHHHHH
Confidence 6778889999999999999999999988874310 012333345
Q ss_pred HHHHHHHHh-hhcccccHHHHHHHHhhccCCcCChHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHH
Q 001487 694 MLCCYADEL-KEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPAL 772 (1069)
Q Consensus 694 ~l~~l~~~~-~~~~~p~~~~~~~~l~~~l~~~~~~~ir~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l 772 (1069)
++|.++... ++.+..++..++..+..- .+..++.++.++.++.+. ..+.++.+.+.++|.+
T Consensus 1300 AmG~L~k~Ss~dq~qKLie~~l~~~l~k-----~es~~siscatis~Ian~-------------s~e~Lkn~asaILPLi 1361 (1702)
T KOG0915|consen 1300 AMGYLAKFSSPDQMQKLIETLLADLLGK-----DESLKSISCATISNIANY-------------SQEMLKNYASAILPLI 1361 (1702)
T ss_pred HHHHHHhcCChHHHHHHHHHHHHHHhcc-----CCCccchhHHHHHHHHHh-------------hHHHHHhhHHHHHHHH
Confidence 567776654 335666666655544332 233446667766664443 2345778889999976
Q ss_pred HHHHccCCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCCCChHhhhHhhhhhhh
Q 001487 773 VEALHKEPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIKEENEQ 852 (1069)
Q Consensus 773 ~~~~~~~~~~~v~~~~l~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~~~ 852 (1069)
.-...++ +.+ ...-+.++...+.+. +.+.++-+...++..+..+.. +++
T Consensus 1362 FLa~~ee-~Ka----~q~Lw~dvW~e~vsg-gagtvrl~~~eiLn~iceni~-------------------------nn~ 1410 (1702)
T KOG0915|consen 1362 FLAMHEE-EKA----NQELWNDVWAELVSG-GAGTVRLYLLEILNLICENIT-------------------------NNE 1410 (1702)
T ss_pred HHHHhHH-HHH----HHHHHHHHHHHhCCC-CcchhhhhHHHHHHHHHHHhc-------------------------cch
Confidence 6655543 111 223344455444331 223333344444444333221 124
Q ss_pred HHHHHHHHHHHHHHHHHHhhhchh-hhHHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHHhHhhhhhhhhhHhHHHHHHhh
Q 001487 853 EEEVFDQVGEILGTLIKTFKAAFL-PFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEA 931 (1069)
Q Consensus 853 ~~~~~~~~~~~l~~l~~~~~~~~~-~~~~~l~~~l~~~l~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~l~~~ll~~ 931 (1069)
.+.++..++..+..++.......- |++-.+.+.+...+ .+...+.+...+.++...+..++..+..-.+.+....++.
T Consensus 1411 ~w~lr~q~Akai~~~a~~~sss~~~p~ilkl~~~ll~~L-~GRiwdGKe~iLKAl~~~~~a~~~~v~~~~~si~~A~~~e 1489 (1702)
T KOG0915|consen 1411 SWKLRKQAAKAIRVIAEGLSSSAPIPVILKLALSLLDTL-NGRIWDGKEEILKALASAFEAGLADVKRNMSSIEHAVMEE 1489 (1702)
T ss_pred HHHHHHHHHHHHHHHcccccccCChHHHHHHHHHHHHHh-hccccccHHHHHHHHHHHHHHhHHHHHHhchHHHHHHHHH
Confidence 577888888888888777766654 77777777777666 4677777888888888887777776655444555555544
Q ss_pred ccCCChhHHHhhhHHHHHHHhhcC
Q 001487 932 CNDENQDVRQAAVYGLGVCAEFGG 955 (1069)
Q Consensus 932 l~~~~~~vr~~a~~~lg~l~~~~~ 955 (1069)
+......-+..+..+.|......+
T Consensus 1490 ~sr~~~~y~~~ala~~~~~lda~~ 1513 (1702)
T KOG0915|consen 1490 VSRREAKYKIMALAGAGLALDATK 1513 (1702)
T ss_pred HHHHHhHHHHHHHhhhHHHHhhhh
Confidence 443344444444444555444444
No 29
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=1.3e-09 Score=122.56 Aligned_cols=487 Identities=14% Similarity=0.165 Sum_probs=276.7
Q ss_pred HHHHHHcc--CCCHHHHHHHHHHHHhhcccCCCCcccCCCHHHHHHHHHHHHHHHhhcch-hhHHHHHHHHHHHHHhccc
Q 001487 60 KLAHLLQR--SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESA-KSISKKLCDTVSELASNIL 136 (1069)
Q Consensus 60 ~L~~il~~--~~~~~~R~~a~i~L~~~i~~~~~~~w~~l~~~~~~~i~~~ll~~l~~e~~-~~vr~~~~~~i~~i~~~~~ 136 (1069)
.+.+++.. ++++..|..|-..|++.=+. ......+++.+.++.. -.+|..++-=+-..+...|
T Consensus 5 ~l~~~~~~T~d~d~~~R~~AE~~L~q~~K~--------------pgFv~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W 70 (1010)
T KOG1991|consen 5 SLLQIFRATIDSDAKERKAAEQQLNQLEKQ--------------PGFVSSLLQIIMDDGVPLPVRQAAAIYLKNKITKSW 70 (1010)
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhhcC--------------CcHHHHHHHHHHccCCchhHHHHHHHHHHHHHHhcC
Confidence 34555543 66799999999999875432 2345577888877543 4578877766665555445
Q ss_pred CCCCc--------h----hhHHHHHHhhcCCChhHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHhhcCCCChHHHHH
Q 001487 137 PENGW--------P----ELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIA 204 (1069)
Q Consensus 137 ~~~~w--------~----~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~ 204 (1069)
+.+.- + -+-..++..+.......|..-..++..|.... +..+.+.+++.+...|+++ +...-..
T Consensus 71 ~~~~~~g~~~~I~e~dk~~irenIl~~iv~~p~~iRvql~~~l~~Ii~~D---~p~~Wp~l~d~i~~~Lqs~-~~~~vy~ 146 (1010)
T KOG1991|consen 71 SSHEAPGRPFGIPEEDKAVIRENILETIVQVPELIRVQLTACLNTIIKAD---YPEQWPGLLDKIKNLLQSQ-DANHVYG 146 (1010)
T ss_pred CccCCCCCcCCCChHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhcC---CcccchhHHHHHHHHhcCc-chhhHHH
Confidence 53311 1 13344455444444556655556666665542 2236888999999999997 7778889
Q ss_pred HHHHHHHHHHhhC--Ccc----hHhHHHhhHHHHHHHHHHHHhCCChHH---HHHHHHHHHHHHcc-ccHHH-H-HhHHH
Q 001487 205 ALNAVINFIQCLT--SSA----DRDRFQDLLPLMMRTLTESLNNGNEAT---AQEALELLIELAGT-EPRFL-R-RQLVD 272 (1069)
Q Consensus 205 a~~~l~~l~~~~~--~~~----~~~~~~~~~~~~l~~l~~~l~~~~~~~---~~~~~~~l~~l~~~-~~~~~-~-~~~~~ 272 (1069)
|+-|+..+++..+ ..+ -...+..++|.+++.....+..++... .+..+..+-.++.. .|..+ . ..+..
T Consensus 147 aLl~l~qL~k~ye~k~~eeR~~l~~~v~~~fP~il~~~~~ll~~~s~~s~el~klIlKifks~~~~~LP~~L~~~~~f~~ 226 (1010)
T KOG1991|consen 147 ALLCLYQLFKTYEWKKDEERQPLGEAVEELFPDILQIFNGLLSQESYQSVELQKLILKIFKSLIYYELPLELSAPETFTS 226 (1010)
T ss_pred HHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhCCHHhhCchhHHH
Confidence 9999999887654 111 224466788888888888777655433 23334444333321 12222 2 23445
Q ss_pred HHHHHHHHhcCCC------cchHHH---------HHHHHHHHHHHHhhhccchhh----hc-----chhhHHHHHHHHHH
Q 001487 273 VVGSMLQIAEAES------LEEGTR---------HLAIEFVITLAEARERAPGMM----RK-----LPQFINRLFAILMS 328 (1069)
Q Consensus 273 l~~~l~~~~~~~~------~~~~~r---------~~a~~~l~~l~~~~~~~~~~~----~~-----~~~~~~~l~~~l~~ 328 (1069)
.+.+++.+++.+- .+++.| .=|+..+..+.+-.. .|... +. ..++...++...++
T Consensus 227 W~~l~l~i~~rpvP~E~l~~d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg-~~~~~~~~y~~Fa~~f~~n~~~~ile~~lk 305 (1010)
T KOG1991|consen 227 WMELFLSILNRPVPVEVLSLDPEDRSSWPWWKCKKWALHILNRLFERYG-SPSLVVPEYKEFAQMFLKNFAQGILEVFLK 305 (1010)
T ss_pred HHHHHHHHHcCCCChhcccCChhhcccccchhhHHHHHHHHHHHHHHhC-CccccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666664331 233333 335666666665321 11111 11 12344445555544
Q ss_pred hhcCCCCCcccccCCCCCccccCCcchhhHHHHHHHHHHHcCCccchHHHHHHHHHhhc-------------------CC
Q 001487 329 MLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLA-------------------AP 389 (1069)
Q Consensus 329 ~l~~~~~~~~~~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-------------------~~ 389 (1069)
.+..-.. ..|- +-++-..++.-+......+.+++.+-|+++-.+. ||
T Consensus 306 ~l~~~~~-~~yl-------------s~rvl~~~l~fl~~~Vs~~~twkll~PHl~~ii~~vIFPlmc~~d~deelwe~DP 371 (1010)
T KOG1991|consen 306 ILEQWRQ-QLYL-------------SDRVLYYLLNFLEQCVSHASTWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEEDP 371 (1010)
T ss_pred HHHHHHh-cccC-------------CHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhcCH
Confidence 4321111 1121 2223334444444444333444444444433322 11
Q ss_pred ChHH-------------HHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCC--------CCChhHHHHHHHHHHHhHhh
Q 001487 390 EWQK-------------HHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFR--------DPHPRVRWAAINAIGQLSTD 448 (1069)
Q Consensus 390 ~~~~-------------r~aal~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~--------d~~~~vr~~a~~~l~~l~~~ 448 (1069)
.... +.||...+..++..-++ ..++.+++++...|. ..+++-+..|+.++|.++..
T Consensus 372 ~EYiR~~~Di~ed~~sp~~Aa~~~l~~~~~KR~k---e~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~ 448 (1010)
T KOG1991|consen 372 YEYIRKKFDIFEDGYSPDTAALDFLTTLVSKRGK---ETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASI 448 (1010)
T ss_pred HHHHHhcCchhcccCCCcHHHHHHHHHHHHhcch---hhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHH
Confidence 1222 35666666666654421 334445554444433 34677788999999999976
Q ss_pred hchhH--HhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhh-cCCcccccCchHHHHHHHHHHhh-cCChhHHHHHH
Q 001487 449 LGPDL--QNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSE-NCTPEILTPYLDGIVSKLLVLLQ-NGKQMVQEGAL 524 (1069)
Q Consensus 449 ~~~~~--~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~-~~~~~~~~~~l~~i~~~l~~~l~-~~~~~v~~~al 524 (1069)
+...- ....-.-+.+.++..+++ +.-..|..||+.++.+++ .++. ...+...+....+++. +..-.||-.|.
T Consensus 449 L~K~s~~~~~mE~flv~hVfP~f~s-~~g~Lrarac~vl~~~~~~df~d---~~~l~~ale~t~~~l~~d~~lPV~VeAa 524 (1010)
T KOG1991|consen 449 LLKKSPYKSQMEYFLVNHVFPEFQS-PYGYLRARACWVLSQFSSIDFKD---PNNLSEALELTHNCLLNDNELPVRVEAA 524 (1010)
T ss_pred HccCCchHHHHHHHHHHHhhHhhcC-chhHHHHHHHHHHHHHHhccCCC---hHHHHHHHHHHHHHhccCCcCchhhHHH
Confidence 64321 111223455666777888 788899999999999984 4542 2457777888888887 66778999999
Q ss_pred HHHHHHHHhhH---hhhHhhHhhhhHHHHHHHhhccCccccchhhHHHHHHHHHHHhhChhhhhhhHHHHHHH
Q 001487 525 TALASVADSSQ---EHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEV 594 (1069)
Q Consensus 525 ~~l~~l~~~~~---~~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i~~~ 594 (1069)
-++..++.... +.+.++.+.+++-|+.+.+....+. + -.++..+....+ +.+.||+.++++.
T Consensus 525 lALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~---L----t~vme~iV~~fs-eElsPfA~eL~q~ 589 (1010)
T KOG1991|consen 525 LALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDD---L----TNVMEKIVCKFS-EELSPFAVELCQN 589 (1010)
T ss_pred HHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhH---H----HHHHHHHHHHHH-HhhchhHHHHHHH
Confidence 99999988766 3477777777777777655432211 1 224444444444 4455555554443
No 30
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.69 E-value=1.8e-13 Score=146.53 Aligned_cols=438 Identities=18% Similarity=0.213 Sum_probs=329.7
Q ss_pred HHHHHHHHccCCCHHHHHHHHHHHHhhcccCCCCcccCCCHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccC
Q 001487 58 TLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILP 137 (1069)
Q Consensus 58 ~~~L~~il~~~~~~~~R~~a~i~L~~~i~~~~~~~w~~l~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~ 137 (1069)
+..+++.+. .+.+.+|+..+.+|..+.... .......+...+.+.+.. +...-|..++..++.+.....-
T Consensus 98 ~~~~~~~~~-tps~~~q~~~~~~l~~~~~~~--------~~~~~~~~l~~l~~ll~~-~~~~~~~~aa~~~ag~v~g~~i 167 (569)
T KOG1242|consen 98 IEILLEELD-TPSKSVQRAVSTCLPPLVVLS--------KGLSGEYVLELLLELLTS-TKIAERAGAAYGLAGLVNGLGI 167 (569)
T ss_pred HHHHHHhcC-CCcHHHHHHHHHHhhhHHHHh--------hccCHHHHHHHHHHHhcc-ccHHHHhhhhHHHHHHHcCcHH
Confidence 344444433 567889999999998877442 222344556666777774 6788899988888888775432
Q ss_pred CC-CchhhHHHHHHhhcCCCh-hHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHh
Q 001487 138 EN-GWPELLPFMFQCVSSDSV-KLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQC 215 (1069)
Q Consensus 138 ~~-~w~~ll~~l~~~~~~~~~-~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~ 215 (1069)
.. .-..++..+...+.+.+. ..|++++.++...+...+..+.|++-.++|.++....|. ...||.+|..+...+...
T Consensus 168 ~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~-~~~Vr~Aa~~a~kai~~~ 246 (569)
T KOG1242|consen 168 ESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDK-INKVREAAVEAAKAIMRC 246 (569)
T ss_pred hhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhcc-chhhhHHHHHHHHHHHHh
Confidence 21 223567777777776654 456678888888888898889999999999999999997 899999999999999988
Q ss_pred hCCcchHhHHHhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHccccHHHHHhHHHHHHHHHHHhcCCCcchHHHHHHH
Q 001487 216 LTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAI 295 (1069)
Q Consensus 216 ~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~ 295 (1069)
++ ......++|..+..+... .|.....+++.++.++...+..+.-.++++++.+.+.+.+ ...++|..+.
T Consensus 247 ~~----~~aVK~llpsll~~l~~~----kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~D--T~~evr~a~~ 316 (569)
T KOG1242|consen 247 LS----AYAVKLLLPSLLGSLLEA----KWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWD--TKPEVRKAGI 316 (569)
T ss_pred cC----cchhhHhhhhhHHHHHHH----hhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHcc--CCHHHHHHHH
Confidence 73 344566777776666542 6778889999999999999999999999999999998854 5789999999
Q ss_pred HHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCcchhhHHHHHHHHHH-----HcC
Q 001487 296 EFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAI-----ALG 370 (1069)
Q Consensus 296 ~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~e~ed~~~~~~~~~a~~~l~~l~~-----~~~ 370 (1069)
+++..+++..+ .+-+..++|.+++.+.++... ..++++.+.. ..-
T Consensus 317 ~~l~~~~svid---------N~dI~~~ip~Lld~l~dp~~~---------------------~~e~~~~L~~ttFV~~V~ 366 (569)
T KOG1242|consen 317 ETLLKFGSVID---------NPDIQKIIPTLLDALADPSCY---------------------TPECLDSLGATTFVAEVD 366 (569)
T ss_pred HHHHHHHHhhc---------cHHHHHHHHHHHHHhcCcccc---------------------hHHHHHhhcceeeeeeec
Confidence 99999888421 134788889999888766411 1123333321 111
Q ss_pred CccchHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhc--HHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhHhh
Q 001487 371 GNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGC--AKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTD 448 (1069)
Q Consensus 371 ~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~--~~~~~~~~~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 448 (1069)
..-+..+.|.+.+.+...+...+..+...++.++.-. +..+.++++.++|.+-..+.|+.|.+|..+.++|+.+.+.
T Consensus 367 -~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~ 445 (569)
T KOG1242|consen 367 -APSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLER 445 (569)
T ss_pred -chhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHH
Confidence 2445678899999888888888888888999888766 5678899999999999999999999999999999999988
Q ss_pred hchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcC--ChhHHHHHHHH
Q 001487 449 LGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNG--KQMVQEGALTA 526 (1069)
Q Consensus 449 ~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~i~~~l~~~l~~~--~~~v~~~al~~ 526 (1069)
.+. .+++...|.+...+.++....-+..+...+...+...+ ..++..+++.++...... .+.++...+..
T Consensus 446 ~g~----~~f~d~~p~l~e~~~~~k~~~~~~g~aq~l~evl~~~~----v~~~~~~~~~~~a~~~~~~~~~~~~dg~~~~ 517 (569)
T KOG1242|consen 446 LGE----VSFDDLIPELSETLTSEKSLVDRSGAAQDLSEVLAGLG----VEKVEDILPEILANASSVLIDERIRDGVIWL 517 (569)
T ss_pred HHh----hcccccccHHHHhhccchhhhhhHHHhhhHHHHHhccc----chHHHHHHHHHHHHHhhccchhhhccCeeeh
Confidence 764 44588999999988774444445666666666665554 256677777777766554 35588888888
Q ss_pred HHHHHHhhHhhhHhhHhhhhHHHHHHHhh
Q 001487 527 LASVADSSQEHFQKYYDAVMPFLKAILVN 555 (1069)
Q Consensus 527 l~~l~~~~~~~~~~~~~~i~~~l~~~l~~ 555 (1069)
+..+-...+..+.+|+..+++.+.+.+..
T Consensus 518 ~~~lp~~~~~~~~~yi~~i~~~~~k~~ad 546 (569)
T KOG1242|consen 518 FYLLPYIFGFQFQPYIHEILDEFLKGLAD 546 (569)
T ss_pred hhccchhhhHHhHHHHHHHHHHHHHHhhh
Confidence 88888888889999999999999888764
No 31
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.66 E-value=1.9e-09 Score=123.74 Aligned_cols=746 Identities=13% Similarity=0.146 Sum_probs=381.0
Q ss_pred HHHHHHHHcc-CCCHHHHHHHHHHHHhhcccCCCCcccCCCHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcc-
Q 001487 58 TLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNI- 135 (1069)
Q Consensus 58 ~~~L~~il~~-~~~~~~R~~a~i~L~~~i~~~~~~~w~~l~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~i~~~~- 135 (1069)
...+..+++. +.+..++..+.-+|..++...+-..|. ....+..+...+.-.+- ..+.+|..+.+.+..+...-
T Consensus 95 ~~~l~~~~~~~stn~svlr~~iscL~~lLraQd~~aW~--~~~t~~~~~~il~~~~h--~~pkvRk~a~~~i~~VL~~p~ 170 (1176)
T KOG1248|consen 95 LNILAPFLTAESTNGSVLRLAISCLEDLLRAQDASAWS--YSSTKTELFGILAFAAH--KKPKVRKAAQRGIAAVLKGPP 170 (1176)
T ss_pred HHHHHHHHhhhcccchHHHHHHHHHHHHHHHcchhhhc--cccHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHcCCC
Confidence 4555555553 778889999999999999988777798 33445555444333332 46778888877777766510
Q ss_pred -cCCC----------------------------------------Cch-hhH----HHHHHhhcCCChhHHHHHHHHHHH
Q 001487 136 -LPEN----------------------------------------GWP-ELL----PFMFQCVSSDSVKLQESAFLIFAQ 169 (1069)
Q Consensus 136 -~~~~----------------------------------------~w~-~ll----~~l~~~~~~~~~~~r~~al~~l~~ 169 (1069)
.|.. .|| .++ ..+...+...+..++..++.++..
T Consensus 171 ~~~~~~HpA~~~vak~cl~~~e~~~~~a~~t~v~~~L~Ll~~~~~~~p~~li~sl~e~lL~i~~~s~v~v~~~~~q~l~~ 250 (1176)
T KOG1248|consen 171 FAPDAEHPASLSVAKFCLALIESKLGSAENTTVLRSLMLLRDVLSTFPRPLIKSLCEVLLNITTESPVLVLLEVLQCLHS 250 (1176)
T ss_pred CCccccchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHH
Confidence 0111 233 122 222222233344455555555555
Q ss_pred hhhhhhhhcch-hHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhCCcchHhHHHhhHHHHHHHHHHHHhCCChHHH
Q 001487 170 LSQYIGDTLTP-HLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATA 248 (1069)
Q Consensus 170 l~~~~~~~~~~-~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~ 248 (1069)
+....++.+.. ....++..+...--+..+..+...-++++......+... ..+.....+|.++..++.+..+..++..
T Consensus 251 lf~~~~~~l~a~~~a~lL~al~~l~ps~~D~~~t~~W~~v~~~~~~~la~~-q~~~~~~~~~~~~~~~~t~~~s~~~e~~ 329 (1176)
T KOG1248|consen 251 LFKKHPTALAAELNARLLTALMTLSPSENDDLLTVAWLKVLNEAHDILATL-QEEKALQALPRLFSLFFTILESLIEELV 329 (1176)
T ss_pred HHhcCCCcchHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHHHHHHh-CHHHHHHhhhhhhhHHHHHHhcccHHHH
Confidence 55544433221 222333333333223223334444444444433332111 2233334566777777777777788888
Q ss_pred HHHHHHHHHHHccccHHHHHhHHHHHHH-HHHHhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHH
Q 001487 249 QEALELLIELAGTEPRFLRRQLVDVVGS-MLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILM 327 (1069)
Q Consensus 249 ~~~~~~l~~l~~~~~~~~~~~~~~l~~~-l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~ 327 (1069)
..+-+++.++...+.... +.++.. +...+..+ ...+-..+++.+..+.+. .. ....+++.+.+..+.
T Consensus 330 q~a~q~l~~il~~sv~~~----~~~c~~~~~~~l~~k--f~~~~~~ilqi~s~~fek---~G---~~s~~~l~~~L~~l~ 397 (1176)
T KOG1248|consen 330 QAASQSLKEILKESVTVI----DALCSKQLHSLLDYK--FHAVWRFILQILSALFEK---CG---ELSGPELTKTLEGLC 397 (1176)
T ss_pred HHHHHHHHHHhcccCccc----HHHHHHHHHHHHcch--HHHHHHHHHHHHHHHHHH---hh---hhcCHHHHHHHHHHH
Confidence 888888888887766522 222222 11111111 122334455556555552 11 012233333333332
Q ss_pred HhhcCCCCCcccccCCCCCccccCCcchhhHHHHHHHHHHHcCCccchHHHHHHHHHhhcC-CChHHHHHHHHHHHHHHh
Q 001487 328 SMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAA-PEWQKHHAALIALAQIAE 406 (1069)
Q Consensus 328 ~~l~~~~~~~~~~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~-~~~~~r~aal~~l~~l~~ 406 (1069)
. |...+ +.........+++.-...+||+.++. ++|. .+.. .....|-=-+=.|..-+.
T Consensus 398 ~----------lr~~~-------d~~~~~~ld~~IGSAV~AmGPe~vL~-~lpL---nl~~~s~~~~RsWLLPvLR~~i~ 456 (1176)
T KOG1248|consen 398 D----------LRASP-------DFFHKLQLDQCIGSAVRAMGPERVLT-ILPL---NLHAESLSFTRSWLLPVLRDYII 456 (1176)
T ss_pred H----------hhcCC-------CCccHHHHHHHHHHHHHhhCHHHHHH-Hcch---hccccccccchhHhHHHHHHhhc
Confidence 2 11111 11111234567777777777643332 2221 1110 000000000001111111
Q ss_pred hcH-HHHHHhHHHHHHHHH---hhCCCCChh--HHHHHHH----HHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChh
Q 001487 407 GCA-KVMVKNLEQVLSMVL---NSFRDPHPR--VRWAAIN----AIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPR 476 (1069)
Q Consensus 407 ~~~-~~~~~~~~~i~~~l~---~~l~d~~~~--vr~~a~~----~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~ 476 (1069)
+.+ ..+..++-.+...+. ..+.+.... +-+..++ .|-.||+. +.+. ...+..+.+.+...+.. .+.
T Consensus 457 ~A~La~F~~~ivpla~sl~~K~~~l~~~~~~~~~~~tl~~QLW~LLP~FC~~-P~Dl-~~sF~~la~~l~~al~~--~~e 532 (1176)
T KOG1248|consen 457 GASLAFFTEYIVPLAMSLQLKAKKLKEAGSQVSLYDTLVDQLWSLLPGFCNY-PVDL-AESFTDLAPILGAALLK--RPE 532 (1176)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHhhhhccCcHHHHHHHHHHHHHhChhhhCC-CccH-HHHHHHHHHHHHHHHhc--chH
Confidence 111 122222222211111 112222211 2222211 22233332 2233 34478888999988887 569
Q ss_pred HHHHHHHHHHHhhhcCC--------cccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhH-hhhHhhHhhhhH
Q 001487 477 VQAHAASAVLNFSENCT--------PEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQ-EHFQKYYDAVMP 547 (1069)
Q Consensus 477 v~~~a~~al~~l~~~~~--------~~~~~~~l~~i~~~l~~~l~~~~~~v~~~al~~l~~l~~~~~-~~~~~~~~~i~~ 547 (1069)
.|...|.+|..+++... .+.+..|-.+.++.++..-......-+ .++.+......... ..|..-...+..
T Consensus 533 lr~~Ic~sL~~Lv~~n~~~~~a~e~~e~~s~~AknfL~~lfn~ytq~~~~~~-~~l~~~~~~L~~i~~~~~~~t~~dv~~ 611 (1176)
T KOG1248|consen 533 LRETICNSLRMLVEQNKPSSDAAENKEVLSNDAKNFLPRLFNVYTQTVAAGR-KILASRSTVLEIIRVDYFTVTPTDVVG 611 (1176)
T ss_pred hHHHHHHHHHHHHHcCCCcchHHHHHHHHhhhhhHHHHHHHHHhcCCCcccc-ccHHHHHHHHHHHHHHHhhcccHHHHH
Confidence 99999999999998752 134567788889999988766554443 44444444444333 222222223333
Q ss_pred HHHHHHhhccCccccc----hhhHHHHHHHHHHHhhChhhhhhhHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHHH
Q 001487 548 FLKAILVNATDKSNRM----LRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKC 623 (1069)
Q Consensus 548 ~l~~~l~~~~~~~~~~----lr~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 623 (1069)
.+.+.++......+.. .....++.+..++.....+....+. .+.+. ..++ ++..++..+...+..++..
T Consensus 612 ~l~~s~~e~as~~~~s~~~~~~~slLdl~~~~a~~~~e~~vs~l~-~v~~~---~e~~---~~~~vQkK~yrlL~~l~~~ 684 (1176)
T KOG1248|consen 612 SLKDSAGELASDLDESVASFKTLSLLDLLIALAPVQTESQVSKLF-TVDPE---FENS---SSTKVQKKAYRLLEELSSS 684 (1176)
T ss_pred HHHHHHHhHhccchhhhhhHHHHHHHHHHHhhhccccchhHHHHH-HhhHH---hhcc---ccHHHHHHHHHHHHHHhcC
Confidence 3333333211111011 1111222222232222212111111 11111 1111 1123444555566666554
Q ss_pred hcCCcc----cchhhhhHHHHHhcccCCCccccCCCCccccccCCCcccchhhcCCceeeeccchHHHHHHHHHHHHHHH
Q 001487 624 LGQDFL----PYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYA 699 (1069)
Q Consensus 624 ~~~~~~----~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~a~~~l~~l~ 699 (1069)
+... ..+..+...+.+.++.- ..-.|..++.+|..+.
T Consensus 685 --~s~~~~~~q~i~~I~n~L~ds~qs~-------------------------------------~~~~~~~rl~~L~~L~ 725 (1176)
T KOG1248|consen 685 --PSGEGLVEQRIDDIFNSLLDSFQSS-------------------------------------SSPAQASRLKCLKRLL 725 (1176)
T ss_pred --CchhhHHHHHHHHHHHHHHHHHhcc-------------------------------------chHHHHHHHHHHHHHH
Confidence 2222 23333334443333211 1123567889999999
Q ss_pred HHhhhcccccHHHHHHHHhhccCCcCChHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHccC
Q 001487 700 DELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKE 779 (1069)
Q Consensus 700 ~~~~~~~~p~~~~~~~~l~~~l~~~~~~~ir~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~ 779 (1069)
+.++..+..++++.++.++-.+.+ .+..-|..|..+|..+.+ .......| +++ ....++.+++.+...+..+
T Consensus 726 ~~~~~e~~~~i~k~I~EvIL~~Ke-~n~~aR~~Af~lL~~i~~-i~~~~d~g----~e~--~~~~lnefl~~Isagl~gd 797 (1176)
T KOG1248|consen 726 KLLSAEHCDLIPKLIPEVILSLKE-VNVKARRNAFALLVFIGA-IQSSLDDG----NEP--ASAILNEFLSIISAGLVGD 797 (1176)
T ss_pred HhccHHHHHHHHHHHHHHHHhccc-ccHHHHhhHHHHHHHHHH-HHhhhccc----ccc--hHHHHHHHHHHHHhhhccc
Confidence 988877777788877776666664 588999999999988875 22222222 222 2234455555555555444
Q ss_pred CcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCCCChHhhhHhhhhhhhHHHHHHH
Q 001487 780 PDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVFDQ 859 (1069)
Q Consensus 780 ~~~~v~~~~l~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~~~~~~~~~~ 859 (1069)
. ..++...+-++..++...+..++.+.+..+++.+...|.+ ....++.+
T Consensus 798 ~-~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s------------------------------~sreI~ka 846 (1176)
T KOG1248|consen 798 S-TRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLAS------------------------------NSREIAKA 846 (1176)
T ss_pred H-HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhc------------------------------CCHHHHHH
Confidence 3 3333333778888888877777878777777766555543 22456777
Q ss_pred HHHHHHHHHHHhhhch-hhhHHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHHhHhhhhhh-hhhHhHHHHHHhhc
Q 001487 860 VGEILGTLIKTFKAAF-LPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAAL-KYYETYLPFLLEAC 932 (1069)
Q Consensus 860 ~~~~l~~l~~~~~~~~-~~~~~~l~~~l~~~l~~~~~~~~r~~a~~~l~~l~~~~~~~~~-~~~~~l~~~ll~~l 932 (1069)
+-.++..++..+|... .+|.+.++|.++..+ ++.+...|.-+-.++.-+++.+|.... .+++...-.++..+
T Consensus 847 AI~fikvlv~~~pe~~l~~~~~~LL~sll~ls-~d~k~~~r~Kvr~LlekLirkfg~~eLe~~~pee~~klL~nI 920 (1176)
T KOG1248|consen 847 AIGFIKVLVYKFPEECLSPHLEELLPSLLALS-HDHKIKVRKKVRLLLEKLIRKFGAEELESFLPEEDMKLLTNI 920 (1176)
T ss_pred HHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHhCHHHHHhhCHHHHHHHHHHH
Confidence 8889999999999764 688888999999876 455666777777888899988887644 36665555555544
No 32
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.62 E-value=1.7e-12 Score=135.53 Aligned_cols=394 Identities=15% Similarity=0.166 Sum_probs=282.6
Q ss_pred HHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCch---hhHHHH-HHhhcCCChhHHHHHHHHHHHhhhhhhhhcchhHH
Q 001487 108 LLQSIQLESAKSISKKLCDTVSELASNILPENGWP---ELLPFM-FQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLK 183 (1069)
Q Consensus 108 ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~~~~w~---~ll~~l-~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~ 183 (1069)
+...|.+ ...+-|+.++.-+..+++....++... .++..+ -..+.+++.+.|.+++..+....-..+..-..+..
T Consensus 5 i~r~ltd-KlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~ 83 (675)
T KOG0212|consen 5 IARGLTD-KLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLE 83 (675)
T ss_pred hhhhhhh-HHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHH
Confidence 4455665 567789999999999999766655443 444422 23456778888889999998887777766666899
Q ss_pred HHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhCCcchHhHHHhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHcccc
Q 001487 184 HLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEP 263 (1069)
Q Consensus 184 ~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~ 263 (1069)
.+++.++.++.|+ +..||..|++.+..+++... ..+...++.+..+++....+.+..++. +.+.+..+++.-.
T Consensus 84 ~iv~Pv~~cf~D~-d~~vRyyACEsLYNiaKv~k-----~~v~~~Fn~iFdvL~klsaDsd~~V~~-~aeLLdRLikdIV 156 (675)
T KOG0212|consen 84 KIVPPVLNCFSDQ-DSQVRYYACESLYNIAKVAK-----GEVLVYFNEIFDVLCKLSADSDQNVRG-GAELLDRLIKDIV 156 (675)
T ss_pred HhhHHHHHhccCc-cceeeeHhHHHHHHHHHHhc-----cCcccchHHHHHHHHHHhcCCcccccc-HHHHHHHHHHHhc
Confidence 9999999999998 99999999999999998753 223445567777888777776666554 4445544443211
Q ss_pred --HHHHHhHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCccccc
Q 001487 264 --RFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHS 341 (1069)
Q Consensus 264 --~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~ 341 (1069)
..-.-+++.+++.+-..+. ..+...|...++.+..+-. .|. .++-.|++.+++.|++.+.+..++
T Consensus 157 te~~~tFsL~~~ipLL~eriy--~~n~~tR~flv~Wl~~Lds----~P~--~~m~~yl~~~ldGLf~~LsD~s~e----- 223 (675)
T KOG0212|consen 157 TESASTFSLPEFIPLLRERIY--VINPMTRQFLVSWLYVLDS----VPD--LEMISYLPSLLDGLFNMLSDSSDE----- 223 (675)
T ss_pred cccccccCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhc----CCc--HHHHhcchHHHHHHHHHhcCCcHH-----
Confidence 0002246677776665543 3466778777766655544 343 244568899999999988765321
Q ss_pred CCCCCccccCCcchhhHHHHHHHHHHHcCC--cc-chHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHH
Q 001487 342 AETEDEDAGESSNYSVGQECLDRLAIALGG--NT-IVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQ 418 (1069)
Q Consensus 342 ~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~--~~-~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~ 418 (1069)
.+.....+++.+-..... .. -.+.+++.+...+.++++..+..|+.++..+..-.+...-.++..
T Consensus 224 ------------Vr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~ 291 (675)
T KOG0212|consen 224 ------------VRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSG 291 (675)
T ss_pred ------------HHHHHHHHHHHHHHHHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhh
Confidence 233444455444332211 11 234566677777889999999999999999998888878889999
Q ss_pred HHHHHHhhCCCCCh-hHHHHHHHHHHHhHhhhchhHHh--hhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcc
Q 001487 419 VLSMVLNSFRDPHP-RVRWAAINAIGQLSTDLGPDLQN--QFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPE 495 (1069)
Q Consensus 419 i~~~l~~~l~d~~~-~vr~~a~~~l~~l~~~~~~~~~~--~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~ 495 (1069)
++..+++++.|..+ .++..+...-+.+...+...... --+..++..+.+.+.+ ...+.|.++...+..+....+.+
T Consensus 292 il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~-~~~~tri~~L~Wi~~l~~~~p~q 370 (675)
T KOG0212|consen 292 ILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSD-DREETRIAVLNWIILLYHKAPGQ 370 (675)
T ss_pred hhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhc-chHHHHHHHHHHHHHHHhhCcch
Confidence 99999999998887 47777766655555544432211 1245899999999999 88889999999999988888765
Q ss_pred cccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhHh
Q 001487 496 ILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQE 536 (1069)
Q Consensus 496 ~~~~~l~~i~~~l~~~l~~~~~~v~~~al~~l~~l~~~~~~ 536 (1069)
+.-+..++.+.|++.+.+++..|-..+++.++.++.....
T Consensus 371 -l~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~ 410 (675)
T KOG0212|consen 371 -LLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNS 410 (675)
T ss_pred -hhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCccc
Confidence 5689999999999999999999999999999999876543
No 33
>PTZ00429 beta-adaptin; Provisional
Probab=99.59 E-value=2.8e-10 Score=131.53 Aligned_cols=476 Identities=13% Similarity=0.134 Sum_probs=300.6
Q ss_pred hCCChH-HHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHc-c--CCCHHHHHHHHHHHHhhcccCCCCc
Q 001487 17 LGPDSA-PFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQ-R--SPHPEARAMAAVLLRKLLTRDDSFL 92 (1069)
Q Consensus 17 ~~~~~~-~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~~p~~~~~~L~~il~-~--~~~~~~R~~a~i~L~~~i~~~~~~~ 92 (1069)
+|.|.. -+..++..+.++|-+.|+-..-+|..+.+.+|+..+. .++-+. + +.++.+|.+|...|.++-.
T Consensus 62 ~G~DvS~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelalL-aINtl~KDl~d~Np~IRaLALRtLs~Ir~------ 134 (746)
T PTZ00429 62 MGRDVSYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKALL-AVNTFLQDTTNSSPVVRALAVRTMMCIRV------ 134 (746)
T ss_pred CCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHHH-HHHHHHHHcCCCCHHHHHHHHHHHHcCCc------
Confidence 455543 4456677788889999999999999887767774322 233333 2 7789999999988876532
Q ss_pred ccCCCHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCC-CchhhHHHHHHhhcCCChhHHHHHHHHHHHhh
Q 001487 93 WPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPEN-GWPELLPFMFQCVSSDSVKLQESAFLIFAQLS 171 (1069)
Q Consensus 93 w~~l~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~~~-~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~ 171 (1069)
++..+.+...+.+.+.+ +++.||+.++-++.++.+.. |.- .-..+++.+.+++.++++.+...|+.+|..+.
T Consensus 135 -----~~i~e~l~~~lkk~L~D-~~pYVRKtAalai~Kly~~~-pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~ 207 (746)
T PTZ00429 135 -----SSVLEYTLEPLRRAVAD-PDPYVRKTAAMGLGKLFHDD-MQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVN 207 (746)
T ss_pred -----HHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhhC-cccccccchHHHHHHHhcCCCccHHHHHHHHHHHHH
Confidence 44666777777778876 79999999999999997742 311 11256778888889999999999999999998
Q ss_pred hhhhhhcchhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhCCcchHhHHHhhHHHHHHHHHHHHhCCChHHHHHH
Q 001487 172 QYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEA 251 (1069)
Q Consensus 172 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ 251 (1069)
+..+..+. .....+..++..+.+- ++--+...+++|.. +.+. +.... ..+++.+...+++.++.+...+
T Consensus 208 ~~~~~~l~-l~~~~~~~Ll~~L~e~-~EW~Qi~IL~lL~~---y~P~--~~~e~----~~il~~l~~~Lq~~N~AVVl~A 276 (746)
T PTZ00429 208 DYGSEKIE-SSNEWVNRLVYHLPEC-NEWGQLYILELLAA---QRPS--DKESA----ETLLTRVLPRMSHQNPAVVMGA 276 (746)
T ss_pred HhCchhhH-HHHHHHHHHHHHhhcC-ChHHHHHHHHHHHh---cCCC--CcHHH----HHHHHHHHHHhcCCCHHHHHHH
Confidence 76554332 2333344455555554 55666666666643 2221 11111 2456666666777889999999
Q ss_pred HHHHHHHHccc-cHHHHHhHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhh
Q 001487 252 LELLIELAGTE-PRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSML 330 (1069)
Q Consensus 252 ~~~l~~l~~~~-~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l 330 (1069)
+.++..+.... +..+...+..+-..++.+. ..+.+++..++..+..++.. .|. .+..-+...+-.
T Consensus 277 ik~il~l~~~~~~~~~~~~~~rl~~pLv~L~---ss~~eiqyvaLr~I~~i~~~---~P~-------lf~~~~~~Ff~~- 342 (746)
T PTZ00429 277 IKVVANLASRCSQELIERCTVRVNTALLTLS---RRDAETQYIVCKNIHALLVI---FPN-------LLRTNLDSFYVR- 342 (746)
T ss_pred HHHHHHhcCcCCHHHHHHHHHHHHHHHHHhh---CCCccHHHHHHHHHHHHHHH---CHH-------HHHHHHHhhhcc-
Confidence 99998887543 2333333334444444443 23567888888888777762 332 222212221111
Q ss_pred cCCCCCcccccCCCCCccccCCcchhhHHHHHHHHHHHcCCccchHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHH
Q 001487 331 LDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAK 410 (1069)
Q Consensus 331 ~~~~~~~~~~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~ 410 (1069)
..| ..+ +...-|+.+..... +.-+..++.-+.++..+.+...+..++.++|.++...+.
T Consensus 343 --~~D-----------------p~y-IK~~KLeIL~~Lan-e~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~~ 401 (746)
T PTZ00429 343 --YSD-----------------PPF-VKLEKLRLLLKLVT-PSVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKVDS 401 (746)
T ss_pred --cCC-----------------cHH-HHHHHHHHHHHHcC-cccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhChH
Confidence 111 012 34445555555554 445566778888888888999999999999999976554
Q ss_pred HHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhc--cCCCChhHHHHHHHHHHHh
Q 001487 411 VMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAM--DDFQNPRVQAHAASAVLNF 488 (1069)
Q Consensus 411 ~~~~~~~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l--~~~~~~~v~~~a~~al~~l 488 (1069)
....++..++..+.+....+ ..++..+..+.+..+. .+ +++.++..+ ..-.++..+.+.+|.|+.+
T Consensus 402 ----~a~~cV~~Ll~ll~~~~~~v-~e~i~vik~IlrkyP~----~~---il~~L~~~~~~~~i~e~~AKaaiiWILGEy 469 (746)
T PTZ00429 402 ----VAPDCANLLLQIVDRRPELL-PQVVTAAKDIVRKYPE----LL---MLDTLVTDYGADEVVEEEAKVSLLWMLGEY 469 (746)
T ss_pred ----HHHHHHHHHHHHhcCCchhH-HHHHHHHHHHHHHCcc----HH---HHHHHHHhhcccccccHHHHHHHHHHHHhh
Confidence 34556666666666544433 3456666666554432 11 455555433 2224678888999999998
Q ss_pred hhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhHhhhHhhHhhhhHHHHHHHhhccCccccchhhHH
Q 001487 489 SENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKS 568 (1069)
Q Consensus 489 ~~~~~~~~~~~~l~~i~~~l~~~l~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~a 568 (1069)
++... ..+.++..++.-+...+..||..++.+...+....+.+..+ .+..+++...+ +.++..+|-+|
T Consensus 470 ~~~I~------~a~~~L~~~i~~f~~E~~~VqlqlLta~vKlfl~~p~~~~~----~l~~vL~~~t~--~~~d~DVRDRA 537 (746)
T PTZ00429 470 CDFIE------NGKDIIQRFIDTIMEHEQRVQLAILSAAVKMFLRDPQGMEP----QLNRVLETVTT--HSDDPDVRDRA 537 (746)
T ss_pred HhhHh------hHHHHHHHHHhhhccCCHHHHHHHHHHHHHHHhcCcHHHHH----HHHHHHHHHHh--cCCChhHHHHH
Confidence 87543 23456666666666677889988888888777665544322 33333332222 22345688888
Q ss_pred HHHHHHHH
Q 001487 569 MECISLVG 576 (1069)
Q Consensus 569 ~~~l~~l~ 576 (1069)
+..+..+.
T Consensus 538 ~~Y~rLLs 545 (746)
T PTZ00429 538 FAYWRLLS 545 (746)
T ss_pred HHHHHHHc
Confidence 87766553
No 34
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.58 E-value=1e-11 Score=129.75 Aligned_cols=413 Identities=16% Similarity=0.166 Sum_probs=289.1
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHHHHHhhCCcchHhHHHhhHHHHHHHH-HHHHhCCChHHHHHHHHHHHHHHccccHHH
Q 001487 188 VFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTL-TESLNNGNEATAQEALELLIELAGTEPRFL 266 (1069)
Q Consensus 188 ~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l-~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~ 266 (1069)
.+.++++|. -.+-|++|..-+-.++..+-...+.+.+ ..+++.+ .....+++...|+.++-.+...+-..+..-
T Consensus 4 ~i~r~ltdK-lYekRKaaalelEk~Vk~l~~~~~~~~i----~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~ 78 (675)
T KOG0212|consen 4 SIARGLTDK-LYEKRKAAALELEKLVKDLVNNNDYDQI----RKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKD 78 (675)
T ss_pred HhhhhhhhH-HHHHHHHHHHHHHHHHHHHHccCcHHHH----HHHHHHHHHHhccCcccccccchHHHHHHHHHHhcccc
Confidence 345667776 7778888888888887765333333333 3444432 334445566666666555554433334444
Q ss_pred HHhHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCC
Q 001487 267 RRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETED 346 (1069)
Q Consensus 267 ~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~e~ 346 (1069)
.+|+..+++..+.++.+ .+..+|..|++.++.+++..+ .....|.+.++..+.+...+.+.
T Consensus 79 ~~Y~~~iv~Pv~~cf~D--~d~~vRyyACEsLYNiaKv~k------~~v~~~Fn~iFdvL~klsaDsd~----------- 139 (675)
T KOG0212|consen 79 AGYLEKIVPPVLNCFSD--QDSQVRYYACESLYNIAKVAK------GEVLVYFNEIFDVLCKLSADSDQ----------- 139 (675)
T ss_pred HHHHHHhhHHHHHhccC--ccceeeeHhHHHHHHHHHHhc------cCcccchHHHHHHHHHHhcCCcc-----------
Confidence 55888999998888854 578899999999999998522 23445777788887776554421
Q ss_pred ccccCCcchhhHHHHHHHHHHHcCCc----cchHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHH
Q 001487 347 EDAGESSNYSVGQECLDRLAIALGGN----TIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSM 422 (1069)
Q Consensus 347 ed~~~~~~~~~a~~~l~~l~~~~~~~----~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~i~~~ 422 (1069)
..+-+.+.++++.+..-.+ --++.++|.+.+.+...++..|...+.++..+-....-.+-.|++.+++.
T Consensus 140 -------~V~~~aeLLdRLikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldG 212 (675)
T KOG0212|consen 140 -------NVRGGAELLDRLIKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDG 212 (675)
T ss_pred -------ccccHHHHHHHHHHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHH
Confidence 1233566777776543222 24678999999999999999999999999988777666788999999999
Q ss_pred HHhhCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchH
Q 001487 423 VLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLD 502 (1069)
Q Consensus 423 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~ 502 (1069)
++..|.|+++.||..+-.+++.+..........-..+..++.+...+.+ +++.+|..|...+..|+...+.. +.+|+.
T Consensus 213 Lf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~s-s~~~iq~~al~Wi~efV~i~g~~-~l~~~s 290 (675)
T KOG0212|consen 213 LFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQS-SEPEIQLKALTWIQEFVKIPGRD-LLLYLS 290 (675)
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhccccccC-CcHHHHHHHHHHHHHHhcCCCcc-hhhhhh
Confidence 9999999999999999999999887775443111467889999999999 99999999999999999887755 679999
Q ss_pred HHHHHHHHHhhcCCh-hHHHHHHHHHHHHHHhhHhhhH---hhHhhhhHHHHHHHhhccCccccchhhHHHHHHHHHHHh
Q 001487 503 GIVSKLLVLLQNGKQ-MVQEGALTALASVADSSQEHFQ---KYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMA 578 (1069)
Q Consensus 503 ~i~~~l~~~l~~~~~-~v~~~al~~l~~l~~~~~~~~~---~~~~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~l~~~ 578 (1069)
.++..+++++.+... .+++.+...-+.+...++.... --+..++..+...+.+. ...-|..+++.+..+-..
T Consensus 291 ~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~----~~~tri~~L~Wi~~l~~~ 366 (675)
T KOG0212|consen 291 GILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDD----REETRIAVLNWIILLYHK 366 (675)
T ss_pred hhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcc----hHHHHHHHHHHHHHHHhh
Confidence 999999999988766 4666666655555544443222 13457777777776553 334688889999888888
Q ss_pred hChhhhhhhHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHHHhcCCcccchhhhhHHHHHhcc
Q 001487 579 VGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQ 644 (1069)
Q Consensus 579 ~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~~~ 644 (1069)
.+ ..+..+..++...++....+ .+|.+...++..++.+|.. .-.+.+-+.+..+++...
T Consensus 367 ~p-~ql~~h~~~if~tLL~tLsd---~sd~vvl~~L~lla~i~~s---~~~~~~~~fl~sLL~~f~ 425 (675)
T KOG0212|consen 367 AP-GQLLVHNDSIFLTLLKTLSD---RSDEVVLLALSLLASICSS---SNSPNLRKFLLSLLEMFK 425 (675)
T ss_pred Cc-chhhhhccHHHHHHHHhhcC---chhHHHHHHHHHHHHHhcC---cccccHHHHHHHHHHHHh
Confidence 88 55777888888887773332 3355555556666666554 333344444555555553
No 35
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.56 E-value=4.4e-08 Score=112.88 Aligned_cols=736 Identities=13% Similarity=0.100 Sum_probs=365.8
Q ss_pred HHHHHHHHHhhCCcchHhHHHhhHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHccccHHHHHh--HHHHHHHHHHHh
Q 001487 206 LNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLN--NGNEATAQEALELLIELAGTEPRFLRRQ--LVDVVGSMLQIA 281 (1069)
Q Consensus 206 ~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~--~~~~~~~~~~~~~l~~l~~~~~~~~~~~--~~~l~~~l~~~~ 281 (1069)
+.+|..++.+.+. +.+..-++.+++.+..++. +.+..++..++.||..+.......-..+ ....+..++...
T Consensus 72 ~~LL~li~~~VPs----~vL~~kFs~~~~~l~~~~~~~stn~svlr~~iscL~~lLraQd~~aW~~~~t~~~~~~il~~~ 147 (1176)
T KOG1248|consen 72 AYLLVLILKYVPS----PVLQAKFSDTLNILAPFLTAESTNGSVLRLAISCLEDLLRAQDASAWSYSSTKTELFGILAFA 147 (1176)
T ss_pred HHHHHHHHhhCCH----HHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHcchhhhccccHHHHHHHHHHHH
Confidence 5666666666642 3344455566666666665 5677889999999998876432211111 112222222222
Q ss_pred cCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCcchhhHHHH
Q 001487 282 EAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQEC 361 (1069)
Q Consensus 282 ~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~e~ed~~~~~~~~~a~~~ 361 (1069)
-+..+.+|..|...+..+.......| ..-.+....+...++..+....-. . +.....-....
T Consensus 148 --~h~~pkvRk~a~~~i~~VL~~p~~~~---~~~HpA~~~vak~cl~~~e~~~~~---------a----~~t~v~~~L~L 209 (1176)
T KOG1248|consen 148 --AHKKPKVRKAAQRGIAAVLKGPPFAP---DAEHPASLSVAKFCLALIESKLGS---------A----ENTTVLRSLML 209 (1176)
T ss_pred --hcCchHHHHHHHHHHHHHHcCCCCCc---cccchHHHHHHHHHHHHHHhhhch---------H----HHHHHHHHHHH
Confidence 13468899999999888887321111 111222333333333333211100 0 00000011223
Q ss_pred HHHHHHHcCCccchHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHH-hHHHHHHHHHhhCCCCChhHHHHHHH
Q 001487 362 LDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVK-NLEQVLSMVLNSFRDPHPRVRWAAIN 440 (1069)
Q Consensus 362 l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~-~~~~i~~~l~~~l~d~~~~vr~~a~~ 440 (1069)
|..+...+| ...+..+-..+.......+..++..++.++..+....+..... ....++..+...--+. ..++..+.|
T Consensus 210 l~~~~~~~p-~~li~sl~e~lL~i~~~s~v~v~~~~~q~l~~lf~~~~~~l~a~~~a~lL~al~~l~ps~-~D~~~t~~W 287 (1176)
T KOG1248|consen 210 LRDVLSTFP-RPLIKSLCEVLLNITTESPVLVLLEVLQCLHSLFKKHPTALAAELNARLLTALMTLSPSE-NDDLLTVAW 287 (1176)
T ss_pred HHHhhccCC-HHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhCCCc-cchHHHHHH
Confidence 333333333 3444445555555566778889999999999888766542222 1223444443332111 122222222
Q ss_pred ------HHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHH-HHHHhh
Q 001487 441 ------AIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSK-LLVLLQ 513 (1069)
Q Consensus 441 ------~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~i~~~-l~~~l~ 513 (1069)
+...++. ...+......+.+++..+..+.. ..+.+-..+...+..+.+.+.. +.+.+... +...++
T Consensus 288 ~~v~~~~~~~la~-~q~~~~~~~~~~~~~~~~t~~~s-~~~e~~q~a~q~l~~il~~sv~-----~~~~~c~~~~~~~l~ 360 (1176)
T KOG1248|consen 288 LKVLNEAHDILAT-LQEEKALQALPRLFSLFFTILES-LIEELVQAASQSLKEILKESVT-----VIDALCSKQLHSLLD 360 (1176)
T ss_pred HHHHHHHHHHHHH-hCHHHHHHhhhhhhhHHHHHHhc-ccHHHHHHHHHHHHHHhcccCc-----ccHHHHHHHHHHHHc
Confidence 1122222 22222235678888888886666 7777777888888777765442 44555554 555666
Q ss_pred cCChhHHHHHHHHHHHHHHhhHhhhHhhHhhhhHHHHHHHhhccCccccchhhHHHHHHHHHHHhhChhhhhhhH-----
Q 001487 514 NGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDA----- 588 (1069)
Q Consensus 514 ~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~----- 588 (1069)
-....+-..++..+..+.+.+|+...||+-..+..|...=.. ++..-+...=+|+|.-.+++|++.+...+
T Consensus 361 ~kf~~~~~~ilqi~s~~fek~G~~s~~~l~~~L~~l~~lr~~----~d~~~~~~ld~~IGSAV~AmGPe~vL~~lpLnl~ 436 (1176)
T KOG1248|consen 361 YKFHAVWRFILQILSALFEKCGELSGPELTKTLEGLCDLRAS----PDFFHKLQLDQCIGSAVRAMGPERVLTILPLNLH 436 (1176)
T ss_pred chHHHHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHhhcC----CCCccHHHHHHHHHHHHHhhCHHHHHHHcchhcc
Confidence 666677788999999999999999889888777777654211 12223445567999999999988654322
Q ss_pred --------HHHHHHHHH-HhcCCCCCCCchhhHHHHHHHHHHHHhcCC--------ccc-chhhhhHHHHHhcccCCCcc
Q 001487 589 --------KQVMEVLMS-LQGSQMETDDPTTSYMLQAWARLCKCLGQD--------FLP-YMSVVMPPLLQSAQLKPDVT 650 (1069)
Q Consensus 589 --------~~i~~~l~~-l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~-~l~~i~~~ll~~~~~~~~~~ 650 (1069)
.++++++.. ..+.. ..+..+.|--++..+... ..+ .++.+.-.+...+ |+.
T Consensus 437 ~~s~~~~RsWLLPvLR~~i~~A~-------La~F~~~ivpla~sl~~K~~~l~~~~~~~~~~~tl~~QLW~LL---P~F- 505 (1176)
T KOG1248|consen 437 AESLSFTRSWLLPVLRDYIIGAS-------LAFFTEYIVPLAMSLQLKAKKLKEAGSQVSLYDTLVDQLWSLL---PGF- 505 (1176)
T ss_pred ccccccchhHhHHHHHHhhccCc-------HHHHHHHHHHHHHHHHHHHHhhhhccCcHHHHHHHHHHHHHhC---hhh-
Confidence 233444433 11110 001111111222222111 111 1111111111111 110
Q ss_pred ccCCCCccccccCCCcccchhhcCCceeeeccchHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHhhcc---CCc--C
Q 001487 651 ITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLL---KFY--F 725 (1069)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~a~~~l~~l~~~~~~~~~p~~~~~~~~l~~~l---~~~--~ 725 (1069)
.+ ....+.+++-. . ...|+..... ...+++-+-.-+..++..- ++. .
T Consensus 506 C~-----------------------~P~Dl~~sF~~---l-a~~l~~al~~-~~elr~~Ic~sL~~Lv~~n~~~~~a~e~ 557 (1176)
T KOG1248|consen 506 CN-----------------------YPVDLAESFTD---L-APILGAALLK-RPELRETICNSLRMLVEQNKPSSDAAEN 557 (1176)
T ss_pred hC-----------------------CCccHHHHHHH---H-HHHHHHHHhc-chHhHHHHHHHHHHHHHcCCCcchHHHH
Confidence 00 00000000000 0 0111111111 0122222222222222211 000 0
Q ss_pred ChHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHH-HHHccCCcHHHHHHHHHHHHHHH--------
Q 001487 726 HEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALV-EALHKEPDTEICASMLDSLNECI-------- 796 (1069)
Q Consensus 726 ~~~ir~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~-~~~~~~~~~~v~~~~l~~l~~~i-------- 796 (1069)
.+-+-..|-..|+.+++.... .-..+. +........+..+. ..+ .....++......++.+..
T Consensus 558 ~e~~s~~AknfL~~lfn~ytq----~~~~~~---~~l~~~~~~L~~i~~~~~-~~t~~dv~~~l~~s~~e~as~~~~s~~ 629 (1176)
T KOG1248|consen 558 KEVLSNDAKNFLPRLFNVYTQ----TVAAGR---KILASRSTVLEIIRVDYF-TVTPTDVVGSLKDSAGELASDLDESVA 629 (1176)
T ss_pred HHHHhhhhhHHHHHHHHHhcC----CCcccc---ccHHHHHHHHHHHHHHHh-hcccHHHHHHHHHHHHhHhccchhhhh
Confidence 111222233333333332210 000110 01111111111111 111 1122333333333333322
Q ss_pred -----------HHhCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCCCChHhhhHhhhhhhhHHHHHHHHHHHHH
Q 001487 797 -----------QISGPLLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVFDQVGEILG 865 (1069)
Q Consensus 797 -----------~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~~~~~~~~~~~~~~l~ 865 (1069)
...++..+.+.+..++ .+.+-.. ......+..-+.++|.
T Consensus 630 ~~~~~slLdl~~~~a~~~~e~~vs~l~-~v~~~~e-----------------------------~~~~~~vQkK~yrlL~ 679 (1176)
T KOG1248|consen 630 SFKTLSLLDLLIALAPVQTESQVSKLF-TVDPEFE-----------------------------NSSSTKVQKKAYRLLE 679 (1176)
T ss_pred hHHHHHHHHHHHhhhccccchhHHHHH-HhhHHhh-----------------------------ccccHHHHHHHHHHHH
Confidence 2222222222222222 1110000 1113345556777888
Q ss_pred HHHHHhh-hc-hhhhHHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHHhHhhhhhhhhhHhHHHHHHhhccCCChhHHHhh
Q 001487 866 TLIKTFK-AA-FLPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAA 943 (1069)
Q Consensus 866 ~l~~~~~-~~-~~~~~~~l~~~l~~~l~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~l~~~ll~~l~~~~~~vr~~a 943 (1069)
.+...-. .. ...++..+...+.+-. ++.....+...+.++..+++.++.....+++..+|.++-.+++.+...|++|
T Consensus 680 ~l~~~~s~~~~~~q~i~~I~n~L~ds~-qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~A 758 (1176)
T KOG1248|consen 680 ELSSSPSGEGLVEQRIDDIFNSLLDSF-QSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVNVKARRNA 758 (1176)
T ss_pred HHhcCCchhhHHHHHHHHHHHHHHHHH-hccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccccHHHHhhH
Confidence 7776611 11 1233444555555544 3344456778899999999999976677888889888877788999999999
Q ss_pred hHHHHHHH--hhcCCC----chHHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHHHHHhhcCCCC---CHhhHHHHH
Q 001487 944 VYGLGVCA--EFGGSV----VKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQFHRDSI---DAAQVVPAW 1014 (1069)
Q Consensus 944 ~~~lg~l~--~~~~~~----~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~---~~~~~~~~~ 1014 (1069)
..||-.+. ....+. ....+.+++..|+.-+... ...++...+-+++.+...+...+ .+++++..+
T Consensus 759 f~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd------~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V 832 (1176)
T KOG1248|consen 759 FALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGD------STRVVASDIVAITHILQEFKNILDDETLEKLISMV 832 (1176)
T ss_pred HHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhccc------HHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 99988777 333221 1224555566665554332 22233333778888888776654 467777777
Q ss_pred HhhCCCCCcHHHHHHHHHHHHHHHhhcCCcccCcCcCChhHHHHHHHHHh
Q 001487 1015 LNCLPIKGDLIEAKIVHEQLCSMVERSDSDLLGPNHQYLPKIVSVFAEVS 1064 (1069)
Q Consensus 1015 l~~lp~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~ 1064 (1069)
...|-- +..+-...+..++..++..-|..++.+ |+|+|++.+..-+
T Consensus 833 ~~~L~s-~sreI~kaAI~fikvlv~~~pe~~l~~---~~~~LL~sll~ls 878 (1176)
T KOG1248|consen 833 CLYLAS-NSREIAKAAIGFIKVLVYKFPEECLSP---HLEELLPSLLALS 878 (1176)
T ss_pred HHHHhc-CCHHHHHHHHHHHHHHHHcCCHHHHhh---hHHHHHHHHHHHH
Confidence 666653 456778899999999998888877775 7888888766543
No 36
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.56 E-value=5.2e-11 Score=139.70 Aligned_cols=509 Identities=17% Similarity=0.229 Sum_probs=330.1
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhhhc--CchHHHHHHHHHHccCCCHHHHHHHHHHHHhhcccCCCCcccCCCHHH
Q 001487 23 PFETLISHLMSTSNEQRSEAELLFNLCKQQ--DPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHT 100 (1069)
Q Consensus 23 ~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~--~p~~~~~~L~~il~~~~~~~~R~~a~i~L~~~i~~~~~~~w~~l~~~~ 100 (1069)
++.+.++... .+...|..+-..|-.+... +.+......+..+. +.+...|+++-..+..+...+ ++.
T Consensus 8 el~~~~~~~~-~~~~~~~~~l~kli~~~~~G~~~~~~~~~vi~l~~-s~~~~~Krl~yl~l~~~~~~~---------~~~ 76 (526)
T PF01602_consen 8 ELAKILNSFK-IDISKKKEALKKLIYLMMLGYDISFLFMEVIKLIS-SKDLELKRLGYLYLSLYLHED---------PEL 76 (526)
T ss_dssp HHHHHHHCSS-THHHHHHHHHHHHHHHHHTT---GSTHHHHHCTCS-SSSHHHHHHHHHHHHHHTTTS---------HHH
T ss_pred HHHHHHhcCC-CCHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhcc---------hhH
Confidence 4555555444 4666777777776654332 22322233333333 788999999999999887653 555
Q ss_pred HHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCCChhHHHHHHHHHHHhhhhhhhhcch
Q 001487 101 QSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTP 180 (1069)
Q Consensus 101 ~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~ 180 (1069)
.-.+.+.+.+-+.+ +++.+|..+..+++.+... .-.+.+++.+.+.+.++++.+|..|+.++..+....++.+..
T Consensus 77 ~~l~~n~l~kdl~~-~n~~~~~lAL~~l~~i~~~----~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~ 151 (526)
T PF01602_consen 77 LILIINSLQKDLNS-PNPYIRGLALRTLSNIRTP----EMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVED 151 (526)
T ss_dssp HHHHHHHHHHHHCS-SSHHHHHHHHHHHHHH-SH----HHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHG
T ss_pred HHHHHHHHHHhhcC-CCHHHHHHHHhhhhhhccc----chhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHH
Confidence 66677777777876 6889999988888887643 356889999999999999999999999999999887664332
Q ss_pred hHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhCCcchHhHHHhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHc
Q 001487 181 HLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAG 260 (1069)
Q Consensus 181 ~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~ 260 (1069)
. +++.+.+.+.+. ++.|+..|+.++..+ .. ..+.+..+++.+.+.+.+.+...++..+...++++..++.
T Consensus 152 ~---~~~~l~~lL~d~-~~~V~~~a~~~l~~i-~~-----~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~ 221 (526)
T PF01602_consen 152 E---LIPKLKQLLSDK-DPSVVSAALSLLSEI-KC-----NDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAP 221 (526)
T ss_dssp G---HHHHHHHHTTHS-SHHHHHHHHHHHHHH-HC-----THHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTS
T ss_pred H---HHHHHhhhccCC-cchhHHHHHHHHHHH-cc-----CcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhccc
Confidence 2 678888888887 899999999999888 22 1233336777888888887788899999999999988776
Q ss_pred cccHHHHHhHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccc
Q 001487 261 TEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWH 340 (1069)
Q Consensus 261 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~ 340 (1069)
..+..... ..+++.+...+. +.+..+...+..++..+.. ....+..+++.+...+...+
T Consensus 222 ~~~~~~~~--~~~i~~l~~~l~--s~~~~V~~e~~~~i~~l~~-----------~~~~~~~~~~~L~~lL~s~~------ 280 (526)
T PF01602_consen 222 MEPEDADK--NRIIEPLLNLLQ--SSSPSVVYEAIRLIIKLSP-----------SPELLQKAINPLIKLLSSSD------ 280 (526)
T ss_dssp SSHHHHHH--HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHSS-----------SHHHHHHHHHHHHHHHTSSS------
T ss_pred CChhhhhH--HHHHHHHHHHhh--ccccHHHHHHHHHHHHhhc-----------chHHHHhhHHHHHHHhhccc------
Confidence 55544421 234444444432 2356666666666654433 12256777888887776321
Q ss_pred cCCCCCccccCCcchhhHHHHHHHHHHHcCCccchHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHH
Q 001487 341 SAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVL 420 (1069)
Q Consensus 341 ~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~i~ 420 (1069)
.+.+..+.+.+..++...+ ..+. .....+.-...+++..+|..++..+..++.. .....++
T Consensus 281 -----------~nvr~~~L~~L~~l~~~~~-~~v~-~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~------~n~~~Il 341 (526)
T PF01602_consen 281 -----------PNVRYIALDSLSQLAQSNP-PAVF-NQSLILFFLLYDDDPSIRKKALDLLYKLANE------SNVKEIL 341 (526)
T ss_dssp -----------HHHHHHHHHHHHHHCCHCH-HHHG-THHHHHHHHHCSSSHHHHHHHHHHHHHH--H------HHHHHHH
T ss_pred -----------chhehhHHHHHHHhhcccc-hhhh-hhhhhhheecCCCChhHHHHHHHHHhhcccc------cchhhHH
Confidence 1233455566666654431 1122 1112222233488899999999999988864 3455677
Q ss_pred HHHHhhCCCC-ChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccC
Q 001487 421 SMVLNSFRDP-HPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTP 499 (1069)
Q Consensus 421 ~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~ 499 (1069)
+.+...+.+. ++.+|..++..++.++...++. ...+++.+++.+.. ....+...+...+..++...+.
T Consensus 342 ~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~-----~~~~v~~l~~ll~~-~~~~~~~~~~~~i~~ll~~~~~----- 410 (526)
T PF01602_consen 342 DELLKYLSELSDPDFRRELIKAIGDLAEKFPPD-----AEWYVDTLLKLLEI-SGDYVSNEIINVIRDLLSNNPE----- 410 (526)
T ss_dssp HHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSS-----HHHHHHHHHHHHHC-TGGGCHCHHHHHHHHHHHHSTT-----
T ss_pred HHHHHHHHhccchhhhhhHHHHHHHHHhccCch-----HHHHHHHHHHhhhh-ccccccchHHHHHHHHhhcChh-----
Confidence 7777777444 7789999999999999887543 34556666666666 5566677777888888766432
Q ss_pred chHHHHHHHHHHhhc-CChhHHHHHHHHHHHHHHhhHhhhHhhHhhhhHHHHHHHhhccCccccchhhHHHHHHHHHHHh
Q 001487 500 YLDGIVSKLLVLLQN-GKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMA 578 (1069)
Q Consensus 500 ~l~~i~~~l~~~l~~-~~~~v~~~al~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~l~~~ 578 (1069)
....++..+...+.+ .++.++..+++++|..+..... .. ....++..+.+.+.. +...+|..++.++..+...
T Consensus 411 ~~~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~-~~-~~~~~~~~l~~~~~~----~~~~vk~~ilt~~~Kl~~~ 484 (526)
T PF01602_consen 411 LREKILKKLIELLEDISSPEALAAAIWILGEYGELIEN-TE-SAPDILRSLIENFIE----ESPEVKLQILTALAKLFKR 484 (526)
T ss_dssp THHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTT-TT-HHHHHHHHHHHHHTT----SHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccc-cc-cHHHHHHHHHHhhcc----ccHHHHHHHHHHHHHHHhh
Confidence 234457777777765 4577888999999988876664 11 333444444444432 2345788888888888876
Q ss_pred hChhhhhhhHHHHHHHHHHHhcCCCCCCCchhhHHHHHHH
Q 001487 579 VGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWA 618 (1069)
Q Consensus 579 ~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~ 618 (1069)
.+.+...+ .+.+.+....... +.+-.++..+...+.
T Consensus 485 ~~~~~~~~---~i~~~~~~~~~~~-s~~~evr~Ra~~y~~ 520 (526)
T PF01602_consen 485 NPENEVQN---EILQFLLSLATED-SSDPEVRDRAREYLR 520 (526)
T ss_dssp SCSTTHHH---HHHHHHHCHHHHS--SSHHHHHHHHHHHH
T ss_pred CCchhhHH---HHHHHHHHHhccC-CCCHHHHHHHHHHHH
Confidence 65333333 4445544432200 112347777665554
No 37
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.56 E-value=3e-11 Score=141.71 Aligned_cols=452 Identities=17% Similarity=0.220 Sum_probs=290.6
Q ss_pred HhCCChH-HHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHc-c--CCCHHHHHHHHHHHHhhcccCCCC
Q 001487 16 ILGPDSA-PFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQ-R--SPHPEARAMAAVLLRKLLTRDDSF 91 (1069)
Q Consensus 16 ~~~~~~~-~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~~p~~~~~~L~~il~-~--~~~~~~R~~a~i~L~~~i~~~~~~ 91 (1069)
.+|.|.. .+..++..+.+.|...|+-+.-++..+...+|+.. ....+-+. + ++++.+|.+|...+.++.
T Consensus 35 ~~G~~~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~-~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~------ 107 (526)
T PF01602_consen 35 MLGYDISFLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPELL-ILIINSLQKDLNSPNPYIRGLALRTLSNIR------ 107 (526)
T ss_dssp HTT---GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHH-HHHHHHHHHHHCSSSHHHHHHHHHHHHHH-------
T ss_pred HcCCCCchHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHH-HHHHHHHHHhhcCCCHHHHHHHHhhhhhhc------
Confidence 4455644 55566666778899999999999999887677643 33334333 2 788999999999998864
Q ss_pred cccCCCHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCchh-hHHHHHHhhcCCChhHHHHHHHHHHHh
Q 001487 92 LWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPE-LLPFMFQCVSSDSVKLQESAFLIFAQL 170 (1069)
Q Consensus 92 ~w~~l~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~~~~w~~-ll~~l~~~~~~~~~~~r~~al~~l~~l 170 (1069)
+++..+.+...+.+.+.+ +++.||+.++.++..+.+. .| +..+. +++.+.+.+.++++.++..|+.++..+
T Consensus 108 -----~~~~~~~l~~~v~~ll~~-~~~~VRk~A~~~l~~i~~~-~p-~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i 179 (526)
T PF01602_consen 108 -----TPEMAEPLIPDVIKLLSD-PSPYVRKKAALALLKIYRK-DP-DLVEDELIPKLKQLLSDKDPSVVSAALSLLSEI 179 (526)
T ss_dssp -----SHHHHHHHHHHHHHHHHS-SSHHHHHHHHHHHHHHHHH-CH-CCHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH
T ss_pred -----ccchhhHHHHHHHHHhcC-CchHHHHHHHHHHHHHhcc-CH-HHHHHHHHHHHhhhccCCcchhHHHHHHHHHHH
Confidence 366777888888888887 6889999999999999986 34 34455 799999999999999999999999988
Q ss_pred hhhhhhhcchhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhCCcc-----------------------hH-----
Q 001487 171 SQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSA-----------------------DR----- 222 (1069)
Q Consensus 171 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~-----------------------~~----- 222 (1069)
+..++......+.++..+.+.+... ++-++...++.+..+........ ..
T Consensus 180 -~~~~~~~~~~~~~~~~~L~~~l~~~-~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~ 257 (526)
T PF01602_consen 180 -KCNDDSYKSLIPKLIRILCQLLSDP-DPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIK 257 (526)
T ss_dssp -HCTHHHHTTHHHHHHHHHHHHHTCC-SHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -ccCcchhhhhHHHHHHHhhhccccc-chHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 2222211123444444444444443 44444444444432221100000 00
Q ss_pred -hHHHhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHccccHHHHHhHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHH
Q 001487 223 -DRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITL 301 (1069)
Q Consensus 223 -~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l 301 (1069)
......+..+++.+..++.+.+++++..+++++..++...+..+. +....+. .+. .+.+..+|..+++.+..+
T Consensus 258 l~~~~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~-~~~~~~~----~l~-~~~d~~Ir~~~l~lL~~l 331 (526)
T PF01602_consen 258 LSPSPELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVF-NQSLILF----FLL-YDDDPSIRKKALDLLYKL 331 (526)
T ss_dssp HSSSHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHG-THHHHHH----HHH-CSSSHHHHHHHHHHHHHH
T ss_pred hhcchHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchhhh-hhhhhhh----eec-CCCChhHHHHHHHHHhhc
Confidence 000013344556666667777777888888888888776644333 2111111 111 234677888888888888
Q ss_pred HHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCcchhhHHHHHHHHHHHcCCccchHHHHHH
Q 001487 302 AEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQ 381 (1069)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~ 381 (1069)
+.. .-+..+++.+..++.+..+ ......+...+..++..++ ......++.
T Consensus 332 ~~~------------~n~~~Il~eL~~~l~~~~d----------------~~~~~~~i~~I~~la~~~~--~~~~~~v~~ 381 (526)
T PF01602_consen 332 ANE------------SNVKEILDELLKYLSELSD----------------PDFRRELIKAIGDLAEKFP--PDAEWYVDT 381 (526)
T ss_dssp --H------------HHHHHHHHHHHHHHHHC------------------HHHHHHHHHHHHHHHHHHG--SSHHHHHHH
T ss_pred ccc------------cchhhHHHHHHHHHHhccc----------------hhhhhhHHHHHHHHHhccC--chHHHHHHH
Confidence 772 1334466666666532211 1133456667777777664 344556677
Q ss_pred HHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCC-CChhHHHHHHHHHHHhHhhhchhHHhhhhhh
Q 001487 382 LPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRD-PHPRVRWAAINAIGQLSTDLGPDLQNQFHPQ 460 (1069)
Q Consensus 382 l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ 460 (1069)
+.+.+...+..+...+...+..+....++. -..++..+...+.+ .++.++..++|++|+++..... . . ....
T Consensus 382 l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~----~~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~-~-~-~~~~ 454 (526)
T PF01602_consen 382 LLKLLEISGDYVSNEIINVIRDLLSNNPEL----REKILKKLIELLEDISSPEALAAAIWILGEYGELIEN-T-E-SAPD 454 (526)
T ss_dssp HHHHHHCTGGGCHCHHHHHHHHHHHHSTTT----HHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTT-T-T-HHHH
T ss_pred HHHhhhhccccccchHHHHHHHHhhcChhh----hHHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccc-c-c-cHHH
Confidence 777777666677777777777776654432 23345555555554 6788999999999999987654 1 1 5667
Q ss_pred hHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhh--cCChhHHHHHHHHHHHHH
Q 001487 461 VLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQ--NGKQMVQEGALTALASVA 531 (1069)
Q Consensus 461 il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~i~~~l~~~l~--~~~~~v~~~al~~l~~l~ 531 (1069)
++..+.+.+.+ .++.+|..+..++..+....+.. ...+.+++.+.+... +.+.++|..|...+.-+-
T Consensus 455 ~~~~l~~~~~~-~~~~vk~~ilt~~~Kl~~~~~~~---~~~~~i~~~~~~~~~~~s~~~evr~Ra~~y~~ll~ 523 (526)
T PF01602_consen 455 ILRSLIENFIE-ESPEVKLQILTALAKLFKRNPEN---EVQNEILQFLLSLATEDSSDPEVRDRAREYLRLLN 523 (526)
T ss_dssp HHHHHHHHHTT-SHHHHHHHHHHHHHHHHHHSCST---THHHHHHHHHHCHHHHS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcc-ccHHHHHHHHHHHHHHHhhCCch---hhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHc
Confidence 78888888777 67889999999999988776532 224577888888887 789999999988776543
No 38
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.51 E-value=8.5e-12 Score=133.21 Aligned_cols=362 Identities=17% Similarity=0.217 Sum_probs=249.9
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHhhhhhh-hhcch-hHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhCCcchH
Q 001487 145 LPFMFQCVSSDSVKLQESAFLIFAQLSQYIG-DTLTP-HLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADR 222 (1069)
Q Consensus 145 l~~l~~~~~~~~~~~r~~al~~l~~l~~~~~-~~~~~-~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~ 222 (1069)
.+.+.+.+.+.+...+..+...++.+..... +.+.. ....++|.+..++....++.++..|..+|..++..-+.....
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~ 147 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKV 147 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccc
Confidence 5566666677777777777777776654321 11111 234678888888875447999999999999998864321111
Q ss_pred hHHHhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHccccHHHHHhHH--HHHHHHHHHhcCCCcchHHHHHHHHHHHH
Q 001487 223 DRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLV--DVVGSMLQIAEAESLEEGTRHLAIEFVIT 300 (1069)
Q Consensus 223 ~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~--~l~~~l~~~~~~~~~~~~~r~~a~~~l~~ 300 (1069)
-.-..-+|. +..++.+++.+++..++++|+.++...+ .++.++- .++..++..+..+. .....+.+..++..
T Consensus 148 vv~agavp~----fi~Ll~s~~~~v~eQavWALgNIagds~-~~Rd~vl~~g~l~pLl~~l~~~~-~~~~lRn~tW~LsN 221 (514)
T KOG0166|consen 148 VVDAGAVPI----FIQLLSSPSADVREQAVWALGNIAGDSP-DCRDYVLSCGALDPLLRLLNKSD-KLSMLRNATWTLSN 221 (514)
T ss_pred cccCCchHH----HHHHhcCCcHHHHHHHHHHHhccccCCh-HHHHHHHhhcchHHHHHHhcccc-chHHHHHHHHHHHH
Confidence 001133444 4455668899999999999999998654 3455443 45666666664432 24567788999999
Q ss_pred HHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCcchhhHHHHHHHHHHHcCCc---cchHH
Q 001487 301 LAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGN---TIVPV 377 (1069)
Q Consensus 301 l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~---~~~~~ 377 (1069)
+|+.+.-.|. ..-+..++|.+...+...+.+ ...-+..++..++..-... .+-.-
T Consensus 222 lcrgk~P~P~-----~~~v~~iLp~L~~ll~~~D~~-----------------Vl~Da~WAlsyLsdg~ne~iq~vi~~g 279 (514)
T KOG0166|consen 222 LCRGKNPSPP-----FDVVAPILPALLRLLHSTDEE-----------------VLTDACWALSYLTDGSNEKIQMVIDAG 279 (514)
T ss_pred HHcCCCCCCc-----HHHHHHHHHHHHHHHhcCCHH-----------------HHHHHHHHHHHHhcCChHHHHHHHHcc
Confidence 9996421221 135677888888876544211 2233555666555322100 01123
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHH-HHHHHHHhhCC-CCChhHHHHHHHHHHHhHhhhchhHHh
Q 001487 378 ASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLE-QVLSMVLNSFR-DPHPRVRWAAINAIGQLSTDLGPDLQN 455 (1069)
Q Consensus 378 l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~-~i~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~ 455 (1069)
+.|.+...+.+.+.+++-.|+.++|.++.+........++ ..+|.+...+. .+...+|..|||+++.++..-+..+..
T Consensus 280 vv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqa 359 (514)
T KOG0166|consen 280 VVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQA 359 (514)
T ss_pred chHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHH
Confidence 5677778888999999999999999999887764444444 47788888887 667779999999999999877766644
Q ss_pred hhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchH--HHHHHHHHHhhcCChhHHHHHHHHHHHHHHh
Q 001487 456 QFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLD--GIVSKLLVLLQNGKQMVQEGALTALASVADS 533 (1069)
Q Consensus 456 ~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~--~i~~~l~~~l~~~~~~v~~~al~~l~~l~~~ 533 (1069)
-.-..++|.|++.+.. .+.++|..|+|++.+++....++.+ .|+- .+++.+..++.-.+.++...++.++..+...
T Consensus 360 Vida~l~p~Li~~l~~-~ef~~rKEAawaIsN~ts~g~~~qi-~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~ 437 (514)
T KOG0166|consen 360 VIDANLIPVLINLLQT-AEFDIRKEAAWAISNLTSSGTPEQI-KYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKV 437 (514)
T ss_pred HHHcccHHHHHHHHhc-cchHHHHHHHHHHHhhcccCCHHHH-HHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHH
Confidence 4566899999999999 8899999999999999887765533 3432 3678888888777888888899999998876
Q ss_pred hHh
Q 001487 534 SQE 536 (1069)
Q Consensus 534 ~~~ 536 (1069)
...
T Consensus 438 ~e~ 440 (514)
T KOG0166|consen 438 GEA 440 (514)
T ss_pred HHH
Confidence 543
No 39
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.50 E-value=3e-10 Score=120.27 Aligned_cols=463 Identities=17% Similarity=0.218 Sum_probs=276.7
Q ss_pred HHHHHHHHHhhhcCchHHHHHHHHHHccCCCHHHHHHHHHHHHhhcccCCCCcccCCCHHHHHHHHHHHHHHHhhc--ch
Q 001487 40 SEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLE--SA 117 (1069)
Q Consensus 40 ~~A~~~L~~~~~~~p~~~~~~L~~il~~~~~~~~R~~a~i~L~~~i~~~~~~~w~~l~~~~~~~i~~~ll~~l~~e--~~ 117 (1069)
.+|-.+|.+|++ .++.| ..+-+++....+.....+|+..+++++... +..+++.....+|+.+++.+..- ..
T Consensus 2 ~~A~~~L~~FQ~-S~~aW-~i~~eiL~~~~~~~~~~FaaqTlr~Ki~~~----F~~Lp~~~~~slrdsl~thl~~l~~~~ 75 (559)
T KOG2081|consen 2 EKANNWLGNFQK-SNDAW-QICEEILSQKCDVEALLFAAQTLRNKIQYD----FSELPPLTHASLRDSLITHLKELHDHP 75 (559)
T ss_pred chHhHHHHHhCC-ChHHH-HHHHHHHcccchHHHHHHHHHHHHHHHHhh----HHhcCcchhHHHHHHHHHHHHHHHhCC
Confidence 578899999999 45655 778888887778899999999999999987 88888888888888666655431 23
Q ss_pred hhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCCChhHHHHHHHHHHHhhhhhhh---------------hcchhH
Q 001487 118 KSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGD---------------TLTPHL 182 (1069)
Q Consensus 118 ~~vr~~~~~~i~~i~~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~---------------~~~~~~ 182 (1069)
+.++.+++-+++.++-+. + .|.+-++.+++...+..+. .-.-+.+|..+.++..+ .+....
T Consensus 76 ~~i~tQL~vavA~Lal~~-~--~W~n~I~e~v~~~~~~~~~-~~~lLeiL~VlPEE~~~~~~~~~a~Rr~e~~~~l~~~~ 151 (559)
T KOG2081|consen 76 DVIRTQLAVAVAALALHM-P--EWVNPIFELVRALSNKHPA-VPILLEILKVLPEETRDIRLTVGANRRHEFIDELAAQV 151 (559)
T ss_pred chHHHHHHHHHHHHHHHh-H--hhcchHHHHHHHhhcCCcc-HHHHHHHHHhCcHhhcchhhhhhhhhHHHHHHHHHHhH
Confidence 388999999999998863 3 7988777777777666655 33455666666654321 123344
Q ss_pred HHHHHHHHHhhcCC--CChHHHHHHHHHHHHHHHhhCCcchHhHHHhhHHHHHHHHHHHHh-------------------
Q 001487 183 KHLHAVFLNCLTNS--NNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLN------------------- 241 (1069)
Q Consensus 183 ~~l~~~l~~~l~~~--~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~------------------- 241 (1069)
..++..+..+++.. ++..+-..++++++++...-.- ..+.+....| ++..++..++
T Consensus 152 ~~~L~~l~~lLe~~~l~~~~~l~~Vl~~l~SWl~~~~~--~~d~v~a~~p-Li~l~F~sl~~~~lhe~At~cic~ll~~~ 228 (559)
T KOG2081|consen 152 SKVLVFLSDLLERSDLKSSDDLEQVLRCLGSWLRLHVF--PPDQVLASFP-LITLAFRSLSDDELHEEATECICALLYCS 228 (559)
T ss_pred HHHHHHHHHHHhhcCCChhhHHHHHHHHHhhhhhhccC--CHHHHHhhhH-HHHHHHHHcccchhhHHHHHHHHHHHHHh
Confidence 55555555666554 1345666777777777652100 1111111111 1222222221
Q ss_pred -----------------------------CCChHHHHHHHHHHHHHHccccHHHHH---hHHHHHHHHHHHhcCCCcchH
Q 001487 242 -----------------------------NGNEATAQEALELLIELAGTEPRFLRR---QLVDVVGSMLQIAEAESLEEG 289 (1069)
Q Consensus 242 -----------------------------~~~~~~~~~~~~~l~~l~~~~~~~~~~---~~~~l~~~l~~~~~~~~~~~~ 289 (1069)
..|.+.+...+++|.++.+.+...+.. ..-.+++.++-..+ +.+.+
T Consensus 229 ~~~~~~~~~~~~l~~~v~~L~~~~~~a~~~~d~d~~~a~~RIFtel~eaf~~~i~~np~~~l~~vellLl~~~--h~~~e 306 (559)
T KOG2081|consen 229 LDRSEGLPLAAILFIGVIILETAFHLAMAGEDLDKNEAICRIFTELGEAFVVLISTNPEEFLRIVELLLLVAG--HNDTE 306 (559)
T ss_pred hhhhccCchhHHHhccccccchHHHHhhcccCHHHHHHHHHHHHHHHHHHHHHHhhCCCcchhHHHHHHHhcc--CCchh
Confidence 123344444445554444433222211 11123333333333 33457
Q ss_pred HHHHHHHHHHHHHHhh--hccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCC-cchhhHHHHHHHHH
Q 001487 290 TRHLAIEFVITLAEAR--ERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGES-SNYSVGQECLDRLA 366 (1069)
Q Consensus 290 ~r~~a~~~l~~l~~~~--~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~e~ed~~~~-~~~~~a~~~l~~l~ 366 (1069)
+....+.+|..+.+.- .+.....+.+.++..+++..+......+.+..... |++ ++. .-+....+.+..++
T Consensus 307 vie~SF~fW~~lse~l~~~~~~~~~~~frpy~~rLvs~l~~h~qlp~~~~~l~----Ee~--~~f~~fR~~v~dvl~Dv~ 380 (559)
T KOG2081|consen 307 VIEASFNFWYSLSEELTLTDDDEALGIFRPYFLRLVSLLKRHVQLPPDQFDLP----EEE--SEFFEFRLKVGDVLKDVA 380 (559)
T ss_pred hhhhhHHhhhhhHHHHhccccHHHHHHhHHHHHHHHHHHHHHccCCCccccCc----cch--hHHHHHHHHHHHHHHHHH
Confidence 8888999999987741 12222233456788889998888887765221111 011 111 11223556677777
Q ss_pred HHcCCccchHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhH
Q 001487 367 IALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLS 446 (1069)
Q Consensus 367 ~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~ 446 (1069)
...|.+..+..+...+.+ +++.|+.-+|++..+..++.+.+..-...+++++..+.+.= ...+ +|+.++..+|.+.
T Consensus 381 ~iigs~e~lk~~~~~l~e--~~~~We~~EAaLF~l~~~~~~~~~~e~~i~pevl~~i~nlp-~Q~~-~~~ts~ll~g~~~ 456 (559)
T KOG2081|consen 381 FIIGSDECLKQMYIRLKE--NNASWEEVEAALFILRAVAKNVSPEENTIMPEVLKLICNLP-EQAP-LRYTSILLLGEYS 456 (559)
T ss_pred HHhCcHHHHHHHHHHHcc--CCCchHHHHHHHHHHHHHhccCCccccchHHHHHHHHhCCc-cchh-HHHHHHHHHHHHH
Confidence 777876666666555554 57789999999999999998766444445555555554432 2233 9999999999999
Q ss_pred hhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcc--cccCchHHHHHHHHHHhhcCChhHHHHHH
Q 001487 447 TDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPE--ILTPYLDGIVSKLLVLLQNGKQMVQEGAL 524 (1069)
Q Consensus 447 ~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~--~~~~~l~~i~~~l~~~l~~~~~~v~~~al 524 (1069)
+++.... .....++..+...+.. .. ....+..++..++..+... .+.|++..+...+.....+ .+..- .+
T Consensus 457 ew~~~~p--~~le~v~~~~~~~~~~-~~--~as~~a~~~~~i~~~c~~~~~~l~~~~~~l~~~l~~~~~~--~e~a~-l~ 528 (559)
T KOG2081|consen 457 EWVEQHP--ELLEPVLRYIRQGLQL-KR--LASAAALAFHRICSACRVQMTCLIPSLLELIRSLDSTQIN--EEAAC-LL 528 (559)
T ss_pred HHHHhCc--HHHHHHHHHHHHHhhh-cc--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcc--HHHHH-HH
Confidence 9986543 5567777778888877 22 5566666777777665422 1223343443433333322 22221 44
Q ss_pred HHHHHHHHhhH
Q 001487 525 TALASVADSSQ 535 (1069)
Q Consensus 525 ~~l~~l~~~~~ 535 (1069)
..++.++...+
T Consensus 529 ~~~s~i~~~lp 539 (559)
T KOG2081|consen 529 QGISLIISNLP 539 (559)
T ss_pred HHHHHHHhcCC
Confidence 55555555544
No 40
>PTZ00429 beta-adaptin; Provisional
Probab=99.49 E-value=1.4e-08 Score=117.61 Aligned_cols=424 Identities=13% Similarity=0.121 Sum_probs=266.0
Q ss_pred hhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCCChhHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHhhcCCC
Q 001487 118 KSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSN 197 (1069)
Q Consensus 118 ~~vr~~~~~~i~~i~~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~ 197 (1069)
...+..+-.+|+.+... .....+++.++.++.+++...|......+....+.-++ ..--.++.|.+-+.++
T Consensus 47 ~~kk~alKkvIa~mt~G----~DvS~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pe----lalLaINtl~KDl~d~- 117 (746)
T PTZ00429 47 YRKKAAVKRIIANMTMG----RDVSYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPE----KALLAVNTFLQDTTNS- 117 (746)
T ss_pred HHHHHHHHHHHHHHHCC----CCchHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChH----HHHHHHHHHHHHcCCC-
Confidence 33455555666666543 45678999999999999998888877777666543332 2334466777888887
Q ss_pred ChHHHHHHHHHHHHHHHhhCCcchHhHHHhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHccccHHHHHhHHHHHHHH
Q 001487 198 NPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSM 277 (1069)
Q Consensus 198 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l 277 (1069)
++.+|..|+++++.+-. ..+++.++..+.+++.+.++-+|+.|.-|+..+....++.+... .+++.+
T Consensus 118 Np~IRaLALRtLs~Ir~-----------~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~--~~~~~L 184 (746)
T PTZ00429 118 SPVVRALAVRTMMCIRV-----------SSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQ--DFKKDL 184 (746)
T ss_pred CHHHHHHHHHHHHcCCc-----------HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCccccccc--chHHHH
Confidence 99999999998875432 24556777778888889999999999999999887776554211 122333
Q ss_pred HHHhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCcchhh
Q 001487 278 LQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSV 357 (1069)
Q Consensus 278 ~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~e~ed~~~~~~~~~ 357 (1069)
...+. +.+..+...|+..+..+.+. .|... ......+..++..+.+ -.+|.
T Consensus 185 ~~LL~--D~dp~Vv~nAl~aL~eI~~~---~~~~l----~l~~~~~~~Ll~~L~e---~~EW~----------------- 235 (746)
T PTZ00429 185 VELLN--DNNPVVASNAAAIVCEVNDY---GSEKI----ESSNEWVNRLVYHLPE---CNEWG----------------- 235 (746)
T ss_pred HHHhc--CCCccHHHHHHHHHHHHHHh---Cchhh----HHHHHHHHHHHHHhhc---CChHH-----------------
Confidence 33343 45778889999988888762 33211 1223333333333322 12332
Q ss_pred HHHHHHHHHHHcCC-ccchHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcH-HHHHHhHHHHHHHHHhhCCCCChhHH
Q 001487 358 GQECLDRLAIALGG-NTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCA-KVMVKNLEQVLSMVLNSFRDPHPRVR 435 (1069)
Q Consensus 358 a~~~l~~l~~~~~~-~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~-~~~~~~~~~i~~~l~~~l~d~~~~vr 435 (1069)
-..+|+.+....+. +.-...++..+...+++.|.-+..+|+.++-.+...+. +.+......+.+.++.. ...++.+|
T Consensus 236 Qi~IL~lL~~y~P~~~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L-~ss~~eiq 314 (746)
T PTZ00429 236 QLYILELLAAQRPSDKESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTVRVNTALLTL-SRRDAETQ 314 (746)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHh-hCCCccHH
Confidence 12455666554332 12234567777788888999999999888887775542 33333334444555544 45678999
Q ss_pred HHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcC
Q 001487 436 WAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNG 515 (1069)
Q Consensus 436 ~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~i~~~l~~~l~~~ 515 (1069)
..++..+..+....+.-+ .. -+..++-..+| +. .|+......|..++..- ....|+..|.....+.
T Consensus 315 yvaLr~I~~i~~~~P~lf-~~----~~~~Ff~~~~D-p~-yIK~~KLeIL~~Lane~-------Nv~~IL~EL~eYa~d~ 380 (746)
T PTZ00429 315 YIVCKNIHALLVIFPNLL-RT----NLDSFYVRYSD-PP-FVKLEKLRLLLKLVTPS-------VAPEILKELAEYASGV 380 (746)
T ss_pred HHHHHHHHHHHHHCHHHH-HH----HHHhhhcccCC-cH-HHHHHHHHHHHHHcCcc-------cHHHHHHHHHHHhhcC
Confidence 999999988877554322 22 34555556677 54 48888888777765432 3466778888888888
Q ss_pred ChhHHHHHHHHHHHHHHhhHhhhHhhHhhhhHHHHHHHhhccCccccchhhHHHHHHHHHHHhhChhhhhhhHHHHHHHH
Q 001487 516 KQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVL 595 (1069)
Q Consensus 516 ~~~v~~~al~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l 595 (1069)
+..++..++.++|.++...+. ..+.++..|.+++.... + +...++..+..+.+... +.+ ++..+
T Consensus 381 D~ef~r~aIrAIg~lA~k~~~----~a~~cV~~Ll~ll~~~~--~---~v~e~i~vik~IlrkyP-~~~------il~~L 444 (746)
T PTZ00429 381 DMVFVVEVVRAIASLAIKVDS----VAPDCANLLLQIVDRRP--E---LLPQVVTAAKDIVRKYP-ELL------MLDTL 444 (746)
T ss_pred CHHHHHHHHHHHHHHHHhChH----HHHHHHHHHHHHhcCCc--h---hHHHHHHHHHHHHHHCc-cHH------HHHHH
Confidence 899999999999999977654 45566666666664321 1 23345555555554443 211 23333
Q ss_pred HHHh-cCCCCCCCchhhHHHHHHHHHHHHh
Q 001487 596 MSLQ-GSQMETDDPTTSYMLQAWARLCKCL 624 (1069)
Q Consensus 596 ~~l~-~~~~~~~~~~~~~~~~~~~~l~~~~ 624 (1069)
.... ...++ +...+..++..+|+.+...
T Consensus 445 ~~~~~~~~i~-e~~AKaaiiWILGEy~~~I 473 (746)
T PTZ00429 445 VTDYGADEVV-EEEAKVSLLWMLGEYCDFI 473 (746)
T ss_pred HHhhcccccc-cHHHHHHHHHHHHhhHhhH
Confidence 3211 11121 2235777777788776544
No 41
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.45 E-value=2e-11 Score=130.41 Aligned_cols=360 Identities=16% Similarity=0.195 Sum_probs=252.8
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHHHhhCCcchHhHH-HhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHccccH
Q 001487 186 HAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRF-QDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPR 264 (1069)
Q Consensus 186 ~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~-~~~~~~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~ 264 (1069)
.+.....+.++ +...+..+...+..+.+.-..+...... ...+|.+++.+. .+.++..+..+.++|..++....+
T Consensus 68 ~~~~~~~~~S~-~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~---~~~~~~lq~eAAWaLTnIAsgtse 143 (514)
T KOG0166|consen 68 LELMLAALYSD-DPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLS---RDDNPTLQFEAAWALTNIASGTSE 143 (514)
T ss_pred hHHHHHHHhCC-CHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHc---cCCChhHHHHHHHHHHHHhcCchh
Confidence 34444555555 6777888988888888765432111211 244555555443 245688999999999999886654
Q ss_pred HHHHhHH-HHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhH--HHHHHHHHHhhcCCCCCccccc
Q 001487 265 FLRRQLV-DVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFI--NRLFAILMSMLLDIEDDPLWHS 341 (1069)
Q Consensus 265 ~~~~~~~-~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~~~~~ 341 (1069)
.-.-.+. ..++.++.++. +.+..++.+|...+..++. ..|. +.+++ ..+++.|+..+....
T Consensus 144 ~T~~vv~agavp~fi~Ll~--s~~~~v~eQavWALgNIag---ds~~----~Rd~vl~~g~l~pLl~~l~~~~------- 207 (514)
T KOG0166|consen 144 QTKVVVDAGAVPIFIQLLS--SPSADVREQAVWALGNIAG---DSPD----CRDYVLSCGALDPLLRLLNKSD------- 207 (514)
T ss_pred hccccccCCchHHHHHHhc--CCcHHHHHHHHHHHhcccc---CChH----HHHHHHhhcchHHHHHHhcccc-------
Confidence 4333222 34555666664 3578999999999999887 3332 22333 235556665554321
Q ss_pred CCCCCccccCCcchhhHHHHHHHHHHHcCCc---cchHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHH-
Q 001487 342 AETEDEDAGESSNYSVGQECLDRLAIALGGN---TIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLE- 417 (1069)
Q Consensus 342 ~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~- 417 (1069)
..+..+.+..+|..+++.-.|. .....++|.+...+.+.|..+..-|+++++.++++..+.+.-.++
T Consensus 208 ---------~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~ 278 (514)
T KOG0166|consen 208 ---------KLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDA 278 (514)
T ss_pred ---------chHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHc
Confidence 1234566888999998766222 345678899999999999999999999999999999887766665
Q ss_pred HHHHHHHhhCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccc
Q 001487 418 QVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEIL 497 (1069)
Q Consensus 418 ~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~ 497 (1069)
.++|.++..|..+++.++..|++++|.++..-......-.-...+|.+...+...+...++..|||++.++...... .+
T Consensus 279 gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~-qi 357 (514)
T KOG0166|consen 279 GVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQE-QI 357 (514)
T ss_pred cchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHH-HH
Confidence 58899999999999999999999999988765443322234578888888888536677999999999999875432 23
Q ss_pred cCc-hHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhHhhhHhhH--hhhhHHHHHHHhhccCccccchhhHHHHHHHH
Q 001487 498 TPY-LDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYY--DAVMPFLKAILVNATDKSNRMLRAKSMECISL 574 (1069)
Q Consensus 498 ~~~-l~~i~~~l~~~l~~~~~~v~~~al~~l~~l~~~~~~~~~~~~--~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~ 574 (1069)
... -..++|.|+.++++.+.++|..|..+|++++.....+...|+ ..+++.+..+|.- .+ . .+-..+++++..
T Consensus 358 qaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~-~D--~-~ii~v~Ld~l~n 433 (514)
T KOG0166|consen 358 QAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTC-PD--V-KIILVALDGLEN 433 (514)
T ss_pred HHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccC-CC--h-HHHHHHHHHHHH
Confidence 222 236789999999999999999999999999987777666776 3578888888732 22 1 234456777777
Q ss_pred HHHhh
Q 001487 575 VGMAV 579 (1069)
Q Consensus 575 l~~~~ 579 (1069)
+....
T Consensus 434 il~~~ 438 (514)
T KOG0166|consen 434 ILKVG 438 (514)
T ss_pred HHHHH
Confidence 66544
No 42
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=99.39 E-value=2.3e-09 Score=122.28 Aligned_cols=563 Identities=15% Similarity=0.175 Sum_probs=354.8
Q ss_pred hhhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCCChhHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHhhcCC
Q 001487 117 AKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNS 196 (1069)
Q Consensus 117 ~~~vr~~~~~~i~~i~~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~ 196 (1069)
+-..|.....-++.++........-.+++|++.+.. ..+..+...+..-++.+....+.. .+...+.+.+.....+.
T Consensus 95 di~~r~~~~~~l~~~a~~~~~~~tr~~lipf~~e~~-~~~dev~~~~a~~~~~~~~~v~~~--~~~~~ll~~le~l~~~e 171 (759)
T KOG0211|consen 95 DIQLRLNSGRKLSNLALALGVERTRLELIPFLTEAE-DDEDEVLLDLAEQLGTFLPDVGGP--EYAHMLLPPLELLATVE 171 (759)
T ss_pred hhhhhhhhhccccchhhhcccchhhhhhhhHHHHhc-cchhHHHHHHHHHhcccchhccch--hHHHHhhHHHHhhhHHH
Confidence 444566666666666665555334578999999999 666677777777777777664332 24555666777777775
Q ss_pred CChHHHHHHHHHHHHHHHhhCCcchHhHHHhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHcccc-HHHHHhHHHHHH
Q 001487 197 NNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEP-RFLRRQLVDVVG 275 (1069)
Q Consensus 197 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~-~~~~~~~~~l~~ 275 (1069)
...||..++..+...+...+.. ..... ++..+.......-...|..++..+.......+ ..+...+..++
T Consensus 172 -et~vr~k~ve~l~~v~~~~~~~---~~~~~----lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~~~vk~elr~~~- 242 (759)
T KOG0211|consen 172 -ETGVREKAVESLLKVAVGLPKE---KLREH----LVPLLKRLATGDWFQSRLSACGLFGKLYVSLPDDAVKRELRPIV- 242 (759)
T ss_pred -HHHHHHHHHHHHHHHHHhcChH---HHHHH----HHHHHHHccchhhhhcchhhhhhhHHhccCCChHHHHHHHHHHH-
Confidence 7789999999999988876432 11222 22222222222223456677777877666555 44444333333
Q ss_pred HHHHHhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhH-HHHHHHHHHhhcCCCCCcccccCCCCCccccCCcc
Q 001487 276 SMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFI-NRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSN 354 (1069)
Q Consensus 276 ~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~-~~l~~~l~~~l~~~~~~~~~~~~~~e~ed~~~~~~ 354 (1069)
.+++. +....+|..+.+-+..++..- +. ... ..++|.......+ +.++.
T Consensus 243 --~~lc~--d~~~~Vr~~~a~~l~~~a~~~---~~------~~~~s~v~~~~~~L~~D-----------------dqdsV 292 (759)
T KOG0211|consen 243 --QSLCQ--DDTPMVRRAVASNLGNIAKVL---ES------EIVKSEVLPTLIQLLRD-----------------DQDSV 292 (759)
T ss_pred --Hhhcc--ccchhhHHHHHhhhHHHHHHH---HH------HHHHhhccHHHhhhhhc-----------------chhhH
Confidence 34442 346778888777777776631 10 111 2223333222111 13345
Q ss_pred hhhHHHHHHHHHHHcCCc-cchHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChh
Q 001487 355 YSVGQECLDRLAIALGGN-TIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPR 433 (1069)
Q Consensus 355 ~~~a~~~l~~l~~~~~~~-~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~d~~~~ 433 (1069)
+.+|...+..+...+..+ .....+.+.+.+...+.+|.+|+.....+..+...... ...-....+.....++|....
T Consensus 293 r~~a~~~~~~l~~l~~~~~d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~--~~~~~~~~~~~~~l~~~~~~e 370 (759)
T KOG0211|consen 293 REAAVESLVSLLDLLDDDDDVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGP--SATRTQLVPPVSNLLKDEEWE 370 (759)
T ss_pred HHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhcc--ccCcccchhhHHHHhcchhhh
Confidence 667778888887777655 56667778888888999999999877776666554332 123335677888899999999
Q ss_pred HHHHHHHHHHHhHhhhchhH-HhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHh
Q 001487 434 VRWAAINAIGQLSTDLGPDL-QNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLL 512 (1069)
Q Consensus 434 vr~~a~~~l~~l~~~~~~~~-~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~i~~~l~~~l 512 (1069)
+|.++..-...++....... ..-..+.++|.+.....+ ++..||.+....+..+....+.+ .-...+.|.+...+
T Consensus 371 ~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d-~~~~vr~a~a~~~~~~~p~~~k~---~ti~~llp~~~~~l 446 (759)
T KOG0211|consen 371 VRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLD-NALHVRSALASVITGLSPILPKE---RTISELLPLLIGNL 446 (759)
T ss_pred hhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhc-ccchHHHHHhccccccCccCCcC---cCccccChhhhhhc
Confidence 99999988888887765211 012345668888888888 88999888777766665555432 33445567777788
Q ss_pred hcCChhHHHHHHHHHHHHHHhhHh-hhHhhHhhhhHHHHHHHhhccCccccchhhHHHHHHHHHHHhhChhhhhhhHHHH
Q 001487 513 QNGKQMVQEGALTALASVADSSQE-HFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQV 591 (1069)
Q Consensus 513 ~~~~~~v~~~al~~l~~l~~~~~~-~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i 591 (1069)
++..+.||...+..+..+-...+. ...-+-+..+|.+...-.. ..+.+|...++.+..++...|.+.|.+...++
T Consensus 447 ~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d----~~wRvr~ail~~ip~la~q~~~~~~~~~~~~l 522 (759)
T KOG0211|consen 447 KDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAED----LLWRVRLAILEYIPQLALQLGVEFFDEKLAEL 522 (759)
T ss_pred chhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccc----hhHHHHHHHHHHHHHHHHhhhhHHhhHHHHHH
Confidence 888899999888777554433321 2334667778877765322 25778888899999988888754444432222
Q ss_pred HHHHHHHhcCCCCCCCchhhHHHHHHHHHHHHhcCCcccchhhhhHHHHHhcccCCCccccCCCCccccccCCCcccchh
Q 001487 592 MEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETI 671 (1069)
Q Consensus 592 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 671 (1069)
+..- +.+ ....++..+...+..++..+|.. -+...+++.++.....+ + +
T Consensus 523 ~~~~--l~d----~v~~Ir~~aa~~l~~l~~~~G~~--w~~~~~i~k~L~~~~q~-~-------------------y--- 571 (759)
T KOG0211|consen 523 LRTW--LPD----HVYSIREAAARNLPALVETFGSE--WARLEEIPKLLAMDLQD-N-------------------Y--- 571 (759)
T ss_pred HHhh--hhh----hHHHHHHHHHHHhHHHHHHhCcc--hhHHHhhHHHHHHhcCc-c-------------------c---
Confidence 1110 111 12357888999999999999943 34556777776665321 0 1
Q ss_pred hcCCceeeeccchHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHhhccCCcCChHHHHHHHHhHHHHHHHHHHHHHcC
Q 001487 672 TLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKG 751 (1069)
Q Consensus 672 ~~~~~~~~v~~~~~~~k~~a~~~l~~l~~~~~~~~~p~~~~~~~~l~~~l~~~~~~~ir~~a~~~l~~l~~~~~~~~~~~ 751 (1069)
..|...+.++..++..+|..+ +..++++.+..+..|. .++||-.+++.|..+......
T Consensus 572 --------------~~R~t~l~si~~la~v~g~ei--~~~~Llp~~~~l~~D~-vanVR~nvak~L~~i~~~L~~----- 629 (759)
T KOG0211|consen 572 --------------LVRMTTLFSIHELAEVLGQEI--TCEDLLPVFLDLVKDP-VANVRINVAKHLPKILKLLDE----- 629 (759)
T ss_pred --------------chhhHHHHHHHHHHHHhccHH--HHHHHhHHHHHhccCC-chhhhhhHHHHHHHHHhhcch-----
Confidence 124455666777777777654 2566777787777764 899999999999988775421
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHH
Q 001487 752 LAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNEC 795 (1069)
Q Consensus 752 ~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~v~~~~l~~l~~~ 795 (1069)
...+..+-++...+..+.+.+++..+..+.+.+
T Consensus 630 -----------~~~~~~v~pll~~L~~d~~~dvr~~a~~a~~~i 662 (759)
T KOG0211|consen 630 -----------SVRDEEVLPLLETLSSDQELDVRYRAILAFGSI 662 (759)
T ss_pred -----------HHHHHHHHHHHHHhccCcccchhHHHHHHHHHH
Confidence 122222333455566677777776666665544
No 43
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=99.33 E-value=1.1e-08 Score=116.94 Aligned_cols=495 Identities=13% Similarity=0.105 Sum_probs=310.8
Q ss_pred CCCHHHHHHHHHHHHhhcccCCCCcccCCCHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCchhhHHH
Q 001487 68 SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPF 147 (1069)
Q Consensus 68 ~~~~~~R~~a~i~L~~~i~~~~~~~w~~l~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~~~~w~~ll~~ 147 (1069)
.....+|+-++..|.+.+..+ +.+........++..+....-...|..+|.+++..+...-+...-.++.+.
T Consensus 170 ~eet~vr~k~ve~l~~v~~~~--------~~~~~~~~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~~~vk~elr~~ 241 (759)
T KOG0211|consen 170 VEETGVREKAVESLLKVAVGL--------PKEKLREHLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPDDAVKRELRPI 241 (759)
T ss_pred HHHHHHHHHHHHHHHHHHHhc--------ChHHHHHHHHHHHHHccchhhhhcchhhhhhhHHhccCCChHHHHHHHHHH
Confidence 455677999998888887664 222222222223333322123345666667777665532222244678888
Q ss_pred HHHhhcCCChhHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhCCcchHhHHHh
Q 001487 148 MFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQD 227 (1069)
Q Consensus 148 l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ 227 (1069)
..+..++.++.+|.++..-++.+....... .....+++.+.+...|+ ...||..|...+..+...+.... +
T Consensus 242 ~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~--~~~s~v~~~~~~L~~Dd-qdsVr~~a~~~~~~l~~l~~~~~------d 312 (759)
T KOG0211|consen 242 VQSLCQDDTPMVRRAVASNLGNIAKVLESE--IVKSEVLPTLIQLLRDD-QDSVREAAVESLVSLLDLLDDDD------D 312 (759)
T ss_pred HHhhccccchhhHHHHHhhhHHHHHHHHHH--HHHhhccHHHhhhhhcc-hhhHHHHHHHHHHHHHHhcCCch------h
Confidence 888999999999999999999888877663 24566778888888887 88999999999999999885431 3
Q ss_pred hHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHccccHHHHHhHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHhhhc
Q 001487 228 LLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARER 307 (1069)
Q Consensus 228 ~~~~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~ 307 (1069)
....+.+.+.+..++.++.++......+..+....+. ...-...++.....+. +...+.|.....-...++...+.
T Consensus 313 ~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~--~~~~~~~~~~~~~l~~--~~~~e~r~a~a~~~~~l~~~l~~ 388 (759)
T KOG0211|consen 313 VVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGP--SATRTQLVPPVSNLLK--DEEWEVRYAIAKKVQKLACYLNA 388 (759)
T ss_pred hhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhcc--ccCcccchhhHHHHhc--chhhhhhHHhhcchHHHhhhcCc
Confidence 3445666777777788888888777766666543322 1111133343444332 23344444433322333331100
Q ss_pred cchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCcchhhHHHHHHHHHHHcCCccchHHHHHHHHHhhc
Q 001487 308 APGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLA 387 (1069)
Q Consensus 308 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~ 387 (1069)
.+ ...-..+.++|.+.....+... ....+.......+...+|.+...+.+.|.+...++
T Consensus 389 ~~----~~~i~~~~ilp~~~~lv~d~~~-----------------~vr~a~a~~~~~~~p~~~k~~ti~~llp~~~~~l~ 447 (759)
T KOG0211|consen 389 SC----YPNIPDSSILPEVQVLVLDNAL-----------------HVRSALASVITGLSPILPKERTISELLPLLIGNLK 447 (759)
T ss_pred cc----ccccchhhhhHHHHHHHhcccc-----------------hHHHHHhccccccCccCCcCcCccccChhhhhhcc
Confidence 00 0111234455665554332211 11111111222222233445666778888888889
Q ss_pred CCChHHHHHHHHHHHHHHhhcH-HHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHH
Q 001487 388 APEWQKHHAALIALAQIAEGCA-KVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALA 466 (1069)
Q Consensus 388 ~~~~~~r~aal~~l~~l~~~~~-~~~~~~~~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~ 466 (1069)
+..+.+|......+..+-.... ..+....+..+|.+...-.|.++++|.+..+.+-.++...+..+. -+.+-+.+.
T Consensus 448 de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~~~~~---~~~~~~l~~ 524 (759)
T KOG0211|consen 448 DEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLGVEFF---DEKLAELLR 524 (759)
T ss_pred hhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhHHh---hHHHHHHHH
Confidence 9999999988766643332221 134445667888888888888999999999999988877764332 233444555
Q ss_pred hhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhHhhhHhhHhhhh
Q 001487 467 GAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVM 546 (1069)
Q Consensus 467 ~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~i~~~l~~~l~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~i~ 546 (1069)
..+.+ ....+|.+|...+..++..++.+ -+...+++.++....+++...|...+.++..++..+|..+ +...++
T Consensus 525 ~~l~d-~v~~Ir~~aa~~l~~l~~~~G~~---w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei--~~~~Ll 598 (759)
T KOG0211|consen 525 TWLPD-HVYSIREAAARNLPALVETFGSE---WARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEI--TCEDLL 598 (759)
T ss_pred hhhhh-hHHHHHHHHHHHhHHHHHHhCcc---hhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHH--HHHHHh
Confidence 56777 67889999999999999988843 4667788888888777788999999999999999999876 567778
Q ss_pred HHHHHHHhhccCccccchhhHHHHHHHHHHHhhChhhhhhhHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHHH
Q 001487 547 PFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKC 623 (1069)
Q Consensus 547 ~~l~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 623 (1069)
|.+.....+ ....+|..+...+..+...+.......++.++.+.+.. +.+-.++-.+..+++.+...
T Consensus 599 p~~~~l~~D----~vanVR~nvak~L~~i~~~L~~~~~~~~v~pll~~L~~------d~~~dvr~~a~~a~~~i~l~ 665 (759)
T KOG0211|consen 599 PVFLDLVKD----PVANVRINVAKHLPKILKLLDESVRDEEVLPLLETLSS------DQELDVRYRAILAFGSIELS 665 (759)
T ss_pred HHHHHhccC----CchhhhhhHHHHHHHHHhhcchHHHHHHHHHHHHHhcc------CcccchhHHHHHHHHHHHHH
Confidence 888776433 34468888888887777666544444444444433322 12233666766666655443
No 44
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=2e-06 Score=98.42 Aligned_cols=477 Identities=14% Similarity=0.164 Sum_probs=267.0
Q ss_pred HHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCC-ChhHHHHHHHHHHHhhhhhhh
Q 001487 98 LHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSD-SVKLQESAFLIFAQLSQYIGD 176 (1069)
Q Consensus 98 ~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~~~~w~~ll~~l~~~~~~~-~~~~r~~al~~l~~l~~~~~~ 176 (1069)
++..+.+...|++.+.+ ++..+|-.+|..++.++.. .|..--.+.+..++..+.-. ++..=++|+.+|+.++..- -
T Consensus 336 ~eivE~vie~Lls~l~d-~dt~VrWSaAKg~grvt~r-lp~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rG-l 412 (1133)
T KOG1943|consen 336 PEIVEFVIEHLLSALSD-TDTVVRWSAAKGLGRVTSR-LPPELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRG-L 412 (1133)
T ss_pred HHHHHHHHHHHHHhccC-CcchhhHHHHHHHHHHHcc-CcHHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcC-C
Confidence 36778889999999997 7999999999999999986 34122245566666644322 2455679999999887641 1
Q ss_pred hcchhHHHHHHHHHHhhcCC-------CChHHHHHHHHHHHHHHHhhCCcchHhHHHhhHHHHHHHHH-HHHhCCChHHH
Q 001487 177 TLTPHLKHLHAVFLNCLTNS-------NNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLT-ESLNNGNEATA 248 (1069)
Q Consensus 177 ~~~~~~~~l~~~l~~~l~~~-------~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~-~~l~~~~~~~~ 248 (1069)
.+...+..++|.+.+++.-+ ....||.+|+-.+-.+....+. +.+..++..+...|. ..+=+++-..|
T Consensus 413 Llps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~----~~l~p~l~~L~s~LL~~AlFDrevncR 488 (1133)
T KOG1943|consen 413 LLPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSP----SDLKPVLQSLASALLIVALFDREVNCR 488 (1133)
T ss_pred cchHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCCh----hhhhHHHHHHHHHHHHHHhcCchhhHh
Confidence 12225677888888776532 2678999999988888887643 223333333332222 22236677889
Q ss_pred HHHHHHHHHHHccccHHHHHhHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHH
Q 001487 249 QEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMS 328 (1069)
Q Consensus 249 ~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~ 328 (1069)
.+|..+|.+.+...+.+ ||-.+++...- ...-..|.. ++..++.. ...++.|...++..++.
T Consensus 489 RAAsAAlqE~VGR~~n~--p~Gi~Lis~~d------y~sV~~rsN---cy~~l~~~-------ia~~~~y~~~~f~~L~t 550 (1133)
T KOG1943|consen 489 RAASAALQENVGRQGNF--PHGISLISTID------YFSVTNRSN---CYLDLCVS-------IAEFSGYREPVFNHLLT 550 (1133)
T ss_pred HHHHHHHHHHhccCCCC--CCchhhhhhcc------hhhhhhhhh---HHHHHhHH-------HHhhhhHHHHHHHHHHh
Confidence 99999999988765432 11111111000 000111222 23333331 11234466666666654
Q ss_pred hhcCCCCCcccccCCCCCccccCCcchhhHHHHHHHHHHHcCCccchHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhc
Q 001487 329 MLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGC 408 (1069)
Q Consensus 329 ~l~~~~~~~~~~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~ 408 (1069)
. .-..|.. ..+..+..+|..++...+ +.+....++-+.....+.+...|++...+.|.++.++
T Consensus 551 ~-----Kv~HWd~-----------~irelaa~aL~~Ls~~~p-k~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~ 613 (1133)
T KOG1943|consen 551 K-----KVCHWDV-----------KIRELAAYALHKLSLTEP-KYLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGAL 613 (1133)
T ss_pred c-----ccccccH-----------HHHHHHHHHHHHHHHhhH-HhhcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHh
Confidence 2 1123431 234467778888887765 4555455555555666788999999999999888765
Q ss_pred HHHH--HHh--------HHHHHHHHHhhCCCCC--hhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChh
Q 001487 409 AKVM--VKN--------LEQVLSMVLNSFRDPH--PRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPR 476 (1069)
Q Consensus 409 ~~~~--~~~--------~~~i~~~l~~~l~d~~--~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~ 476 (1069)
...- ..+ +..+++.+...-.... ..+|.+.+..+..+...-..-............+.+.+.+ ++ .
T Consensus 614 ~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~-~n-~ 691 (1133)
T KOG1943|consen 614 RKLEPVIKGLDENRIAGLLSIIPPICDRYFYRGQGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTL-PN-Q 691 (1133)
T ss_pred hhhhhhhhhhHHHHhhhhhhhccHHHHHHhccchHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcc-hH-H
Confidence 4311 111 1122222222111111 4566666666666553322211111222333344455555 55 7
Q ss_pred HHHHHHHHHHHhhhcCCcccccCchH-HHHHHHHHHhhcC-ChhHHHHHHHHHHHHHHhhHhhhHhhHhhhhHHHHHHHh
Q 001487 477 VQAHAASAVLNFSENCTPEILTPYLD-GIVSKLLVLLQNG-KQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILV 554 (1069)
Q Consensus 477 v~~~a~~al~~l~~~~~~~~~~~~l~-~i~~~l~~~l~~~-~~~v~~~al~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~ 554 (1069)
+|..+.+++..++...-.. .++.. .++...+..+.+. ...+|.....+++.+....-. .++.+.+...+.....
T Consensus 692 i~~~av~av~~l~s~y~~~--d~~~~~~li~~~ls~~~~~~~~~~r~g~~lal~~lp~~~i~--~~~q~~lc~~~l~~~p 767 (1133)
T KOG1943|consen 692 IRDAAVSAVSDLVSTYVKA--DEGEEAPLITRYLSRLTKCSEERIRRGLILALGVLPSELIH--RHLQEKLCKLVLELLP 767 (1133)
T ss_pred HHHHHHHHHHHHHHHHHhc--CchhhhHHHHHHHHHhcCchHHHHHHHHHHHHccCcHHhhc--hHHHHHHHHHHhccCc
Confidence 8999999999988753211 12222 4666666666665 456666666666555422110 0123333333332211
Q ss_pred hccCccccchhhHHHHHHHHHHHhhChhhhhhhHHHHHHHHHHHhcC-CCCC----CCchhhHHHHHHHHHHHHhc
Q 001487 555 NATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGS-QMET----DDPTTSYMLQAWARLCKCLG 625 (1069)
Q Consensus 555 ~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~l~~~-~~~~----~~~~~~~~~~~~~~l~~~~~ 625 (1069)
.+-...-|...+.++..+...++...+..-..++++.+++..++ ..+. ...+|+.++.++..+...+.
T Consensus 768 ---~d~~a~aR~~~V~al~~v~~~~~~~~~~~~~~k~~e~LL~~lddYttd~rGDVGswVReaAm~al~~~~~~l~ 840 (1133)
T KOG1943|consen 768 ---SDAWAEARQQNVKALAHVCKTVTSLLFSESIEKFRETLLNALDDYTTDSRGDVGSWVREAAMKALSSLLDTLS 840 (1133)
T ss_pred ---ccccHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcccccCccHHHHHHHHHHHHHHhhhhhhc
Confidence 11133456667788888888777555555566667766663321 1111 12489999888877765543
No 45
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.24 E-value=7.6e-08 Score=109.24 Aligned_cols=394 Identities=18% Similarity=0.248 Sum_probs=258.1
Q ss_pred HHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCCChhHHHHHHHHHHHhhhhhhhhcch-hHHHHH
Q 001487 108 LLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTP-HLKHLH 186 (1069)
Q Consensus 108 ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~-~~~~l~ 186 (1069)
++..+.+. +...-..++.+|..+.....+....+++.+.+...+.++++.+|..++..++.+..+....... .-+.++
T Consensus 43 lf~~L~~~-~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~ 121 (503)
T PF10508_consen 43 LFDCLNTS-NREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELL 121 (503)
T ss_pred HHHHHhhc-ChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHH
Confidence 66777753 5555567788888888866554457889999999999999999999999999888764332211 235688
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHHHhhCCcchHhHHHhhHH-HHHHHHHHHHhCCChHHHHHHHHHHHHHHccccHH
Q 001487 187 AVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLP-LMMRTLTESLNNGNEATAQEALELLIELAGTEPRF 265 (1069)
Q Consensus 187 ~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~-~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~ 265 (1069)
+.+..++.++ +..|...|+++|..+...-. .+..+++ ..+..+...+...+..+|..+++++..++...+..
T Consensus 122 ~~i~~~L~~~-d~~Va~~A~~~L~~l~~~~~------~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~ 194 (503)
T PF10508_consen 122 PLIIQCLRDP-DLSVAKAAIKALKKLASHPE------GLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEA 194 (503)
T ss_pred HHHHHHHcCC-cHHHHHHHHHHHHHHhCCch------hHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHH
Confidence 8999999998 99999999999999987531 1122211 22555555555557789999999999999887776
Q ss_pred HHHhHH-HHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHH--HHHHHHHHhhcCCCCCcccccC
Q 001487 266 LRRQLV-DVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFIN--RLFAILMSMLLDIEDDPLWHSA 342 (1069)
Q Consensus 266 ~~~~~~-~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~--~l~~~l~~~l~~~~~~~~~~~~ 342 (1069)
+..... .+++.++..+.+ .|.-++..+++++..+++. +. ...|+. .+++.+...+...++++.+
T Consensus 195 ~~~~~~sgll~~ll~eL~~--dDiLvqlnalell~~La~~----~~----g~~yL~~~gi~~~L~~~l~~~~~dp~~--- 261 (503)
T PF10508_consen 195 AEAVVNSGLLDLLLKELDS--DDILVQLNALELLSELAET----PH----GLQYLEQQGIFDKLSNLLQDSEEDPRL--- 261 (503)
T ss_pred HHHHHhccHHHHHHHHhcC--ccHHHHHHHHHHHHHHHcC----hh----HHHHHHhCCHHHHHHHHHhccccCCcc---
Confidence 654432 478888876643 3556788999999999983 11 123333 3677777776655433200
Q ss_pred CCCCccccCCcchhh-HHHHHHHHHHHcCCc---cchHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHH--HH----
Q 001487 343 ETEDEDAGESSNYSV-GQECLDRLAIALGGN---TIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAK--VM---- 412 (1069)
Q Consensus 343 ~~e~ed~~~~~~~~~-a~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~--~~---- 412 (1069)
...+-. .....+.++..- +. ..+|.++..+.+.+.+.+...+.+|+.++|.++..... .+
T Consensus 262 ---------~~~~l~g~~~f~g~la~~~-~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~ 331 (503)
T PF10508_consen 262 ---------SSLLLPGRMKFFGNLARVS-PQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQ 331 (503)
T ss_pred ---------cchhhhhHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhc
Confidence 011111 224455555432 22 23477777778888899999999999999999865443 22
Q ss_pred HHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhHhhhchh-------HHhhh----hhhhHH-HHHhhccCCCChhHHHH
Q 001487 413 VKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPD-------LQNQF----HPQVLP-ALAGAMDDFQNPRVQAH 480 (1069)
Q Consensus 413 ~~~~~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~-------~~~~~----~~~il~-~l~~~l~~~~~~~v~~~ 480 (1069)
.+.++.++..+..........+|.+++.+++.+.....+. +.... -..-.. .++..++. |-+++|.+
T Consensus 332 ~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~q-PF~elr~a 410 (503)
T PF10508_consen 332 GPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQ-PFPELRCA 410 (503)
T ss_pred chHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcC-CchHHHHH
Confidence 1234556777777777788889999999999986543321 11111 111112 55666677 77999999
Q ss_pred HHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHh
Q 001487 481 AASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADS 533 (1069)
Q Consensus 481 a~~al~~l~~~~~~~~~~~~l~~i~~~l~~~l~~~~~~v~~~al~~l~~l~~~ 533 (1069)
+...+..++..--.....--.+.+++.++.--...+...++.=..++..++..
T Consensus 411 ~~~~l~~l~~~~Wg~~~i~~~~gfie~lldr~~E~~K~~ke~K~~ii~~l~~~ 463 (503)
T PF10508_consen 411 AYRLLQALAAQPWGQREICSSPGFIEYLLDRSTETTKEGKEAKYDIIKALAKS 463 (503)
T ss_pred HHHHHHHHhcCHHHHHHHHhCccHHhhhcCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 99999988865211000112334455544444445566666666666666644
No 46
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.22 E-value=4e-10 Score=110.30 Aligned_cols=361 Identities=15% Similarity=0.208 Sum_probs=225.6
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHhhhh-hhhhcchhH-HHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhCCcchH
Q 001487 145 LPFMFQCVSSDSVKLQESAFLIFAQLSQY-IGDTLTPHL-KHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADR 222 (1069)
Q Consensus 145 l~~l~~~~~~~~~~~r~~al~~l~~l~~~-~~~~~~~~~-~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~ 222 (1069)
+|.+.+.+.|.+.+....|..-++.+... ..+.+.+.+ ..++|.|.+++...+..-.+..|..+|..+.+.-......
T Consensus 73 lp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkv 152 (526)
T COG5064 73 LPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKV 152 (526)
T ss_pred hHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEE
Confidence 47777777777877777777777655532 222233322 3467778888854335567788999999888764321100
Q ss_pred hHHHhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHccccHHHHHhHH--HHHHHHHHHhcCCCcchHHHHHHHHHHHH
Q 001487 223 DRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLV--DVVGSMLQIAEAESLEEGTRHLAIEFVIT 300 (1069)
Q Consensus 223 ~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~--~l~~~l~~~~~~~~~~~~~r~~a~~~l~~ 300 (1069)
-.-..-+|.+++.|. +.+.+++..++++|+.++...+ -.++|+- ..++.++.++..+..+-.+.+.+-..++.
T Consensus 153 Vvd~~AVPlfiqlL~----s~~~~V~eQavWALGNiAGDS~-~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSN 227 (526)
T COG5064 153 VVDAGAVPLFIQLLS----STEDDVREQAVWALGNIAGDSE-GCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSN 227 (526)
T ss_pred EEeCCchHHHHHHHc----CchHHHHHHHHHHhccccCCch-hHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHH
Confidence 001244666666544 6788999999999999887543 3344432 23334444432222223333445555555
Q ss_pred HHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCcchhhHHHHHHHHHHHcCCccchHHHHH
Q 001487 301 LAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASE 380 (1069)
Q Consensus 301 l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~ 380 (1069)
+++.+ .| .++| ......+|
T Consensus 228 lcRGk--nP--------------------------~P~w---------------------------------~~isqalp 246 (526)
T COG5064 228 LCRGK--NP--------------------------PPDW---------------------------------SNISQALP 246 (526)
T ss_pred hhCCC--CC--------------------------CCch---------------------------------HHHHHHHH
Confidence 55521 11 1111 11223445
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHH-HHHHHHhhCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhh
Q 001487 381 QLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQ-VLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHP 459 (1069)
Q Consensus 381 ~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~-i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ 459 (1069)
.+..++.+.++.+-.-|+++++.++++..+.+...++. +.+.+++.|.+++..|+.-|++.+|.+...-......-.--
T Consensus 247 iL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~ 326 (526)
T COG5064 247 ILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINC 326 (526)
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheec
Confidence 55566667778888889999999999888766655553 55678999999999999999999999886543222111123
Q ss_pred hhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCch-HHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhH--h
Q 001487 460 QVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYL-DGIVSKLLVLLQNGKQMVQEGALTALASVADSSQ--E 536 (1069)
Q Consensus 460 ~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l-~~i~~~l~~~l~~~~~~v~~~al~~l~~l~~~~~--~ 536 (1069)
..++.+...|.+ +..++|..|||.+.++..... +.+...+ ..++|.|+.++...+..+|..|++++++.....- +
T Consensus 327 G~L~a~~~lLs~-~ke~irKEaCWTiSNITAGnt-eqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~P 404 (526)
T COG5064 327 GALKAFRSLLSS-PKENIRKEACWTISNITAGNT-EQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRP 404 (526)
T ss_pred ccHHHHHHHhcC-hhhhhhhhhheeecccccCCH-HHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCc
Confidence 456666667888 777999999999998865433 2222222 2467889999999999999999999999876532 3
Q ss_pred hhHhhH--hhhhHHHHHHHhhccCccccchhhHHHHHHHHHHH
Q 001487 537 HFQKYY--DAVMPFLKAILVNATDKSNRMLRAKSMECISLVGM 577 (1069)
Q Consensus 537 ~~~~~~--~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~l~~ 577 (1069)
+...|+ ..++..|...|.-... .+-..+++|+..+..
T Consensus 405 D~iryLv~qG~IkpLc~~L~~~dN----kiiev~LD~~eniLk 443 (526)
T COG5064 405 DIIRYLVSQGFIKPLCDLLDVVDN----KIIEVALDAIENILK 443 (526)
T ss_pred hHHHHHHHccchhHHHHHHhccCc----cchhhhHHHHHHHHh
Confidence 455565 3466677776644211 133335666665543
No 47
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=99.21 E-value=3.4e-09 Score=113.20 Aligned_cols=255 Identities=17% Similarity=0.210 Sum_probs=161.3
Q ss_pred HhHHHhhHHHHHHHHHHHHhCC-------C-------hHHHHHHHHHHHHHHccccHHHHHhHHHHHHHHHHHhcCC---
Q 001487 222 RDRFQDLLPLMMRTLTESLNNG-------N-------EATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAE--- 284 (1069)
Q Consensus 222 ~~~~~~~~~~~l~~l~~~l~~~-------~-------~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~~~~~--- 284 (1069)
++.|.+.+...++.+...+.-+ + +.++..+|+++....+.+.+.+.++++.++...++.+..-
T Consensus 73 Pe~fed~l~~wm~~f~~~L~~~~p~l~~~d~~e~~~l~kvK~~i~~~~~ly~~kY~e~f~~~l~~fv~~vw~lL~~~~~~ 152 (370)
T PF08506_consen 73 PEFFEDNLSEWMEIFHKYLTYPNPALEEDDDDEPGLLEKVKAWICENLNLYAEKYEEEFEPFLPTFVQAVWNLLTKISQQ 152 (370)
T ss_dssp -HHHHHTHHHHHHHHHHHHH--SGGG-TT-SSS--HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTC--SS
T ss_pred cHHHHHHHHHHHHHHHHHHcCCCcccCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3445555666655555444321 1 1345667888888888888999999999888888876331
Q ss_pred CcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHH-HHHHhhcCCCCCc-ccccCCCC-----CccccCCcchhh
Q 001487 285 SLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFA-ILMSMLLDIEDDP-LWHSAETE-----DEDAGESSNYSV 357 (1069)
Q Consensus 285 ~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~-~l~~~l~~~~~~~-~~~~~~~e-----~ed~~~~~~~~~ 357 (1069)
...+.+...+++++.++++..... ..+. ..+.+..++. .+++.|...++|. .|..++.| -|..|..+.+++
T Consensus 153 ~~~D~lv~~al~FL~~v~~~~~~~-~lf~-~~~~L~~Iie~VI~Pnl~~~e~D~ElfEddP~EYIrrd~e~sd~~TrR~A 230 (370)
T PF08506_consen 153 PKYDILVSKALQFLSSVAESPHHK-NLFE-NKPHLQQIIEKVIFPNLCLREEDEELFEDDPEEYIRRDLEGSDSDTRRRA 230 (370)
T ss_dssp GGGHHHHHHHHHHHHHHHTSHHHH-TTT--SHHHHHHHHHHTHHHHHS--HHHHHHHHHSHHHHHHHHSCSS---SHHHH
T ss_pred ccccHHHHHHHHHHHHHHcchhHH-HHhC-CHHHHHHHHHHhccCccCCCHHHHHHHccCHHHHHHhhccccccCCcHHH
Confidence 223556778999999887732111 0111 2456666665 3456666544333 36554432 111234567788
Q ss_pred HHHHHHHHHHHcCCccchHHHHHHHHHhhc------CCChHHHHHHHHHHHHHHhhcHH------------HHHHhHHH-
Q 001487 358 GQECLDRLAIALGGNTIVPVASEQLPAYLA------APEWQKHHAALIALAQIAEGCAK------------VMVKNLEQ- 418 (1069)
Q Consensus 358 a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~------~~~~~~r~aal~~l~~l~~~~~~------------~~~~~~~~- 418 (1069)
|.+.+..+++..+ +.+.+.+..++...++ +.+|+.+.+|+..+++++..... .+...+.+
T Consensus 231 A~dfl~~L~~~~~-~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~ 309 (370)
T PF08506_consen 231 ACDFLRSLCKKFE-KQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQH 309 (370)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHH
T ss_pred HHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHH
Confidence 9999999998886 6777777777777765 56899999999999999865421 12222222
Q ss_pred HHHHHHhhCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHH
Q 001487 419 VLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAV 485 (1069)
Q Consensus 419 i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al 485 (1069)
++|-+. .-.+.+|.+|..|++.+..+-..+++ +.+..++|.+.+.|.+ ++..|+..|+.++
T Consensus 310 v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~----~~l~~~~~~l~~~L~~-~~~vv~tyAA~~i 370 (370)
T PF08506_consen 310 VLPELQ-PDVNSHPILKADAIKFLYTFRNQLPK----EQLLQIFPLLVNHLQS-SSYVVHTYAAIAI 370 (370)
T ss_dssp TCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-H----HHHHHHHHHHHHHTTS-S-HHHHHHHHHHH
T ss_pred hHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCH----HHHHHHHHHHHHHhCC-CCcchhhhhhhhC
Confidence 234333 22367899999999999998877664 5688999999999999 8888988887664
No 48
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=4.4e-05 Score=87.85 Aligned_cols=472 Identities=16% Similarity=0.175 Sum_probs=261.5
Q ss_pred hhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCC-hhHHHHHHHHHHHHHHhh
Q 001487 456 QFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGK-QMVQEGALTALASVADSS 534 (1069)
Q Consensus 456 ~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~i~~~l~~~l~~~~-~~v~~~al~~l~~l~~~~ 534 (1069)
.+++.++..|+..++| .+..||..|+..++.+....+.+. .+.++...+.++.... ...=..++-+++.++..
T Consensus 337 eivE~vie~Lls~l~d-~dt~VrWSaAKg~grvt~rlp~~L----ad~vi~svid~~~p~e~~~aWHgacLaLAELA~r- 410 (1133)
T KOG1943|consen 337 EIVEFVIEHLLSALSD-TDTVVRWSAAKGLGRVTSRLPPEL----ADQVIGSVIDLFNPAEDDSAWHGACLALAELALR- 410 (1133)
T ss_pred HHHHHHHHHHHHhccC-CcchhhHHHHHHHHHHHccCcHHH----HHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhc-
Confidence 4567888999999999 899999999999999998887542 3444444444433222 33445777777777754
Q ss_pred HhhhHhhHhhhhHHHHHHHhhccC----ccccchhhHHHHHHHHHHHhhChhhhhhhHHHHHHHHHH--HhcCCCCCCCc
Q 001487 535 QEHFQKYYDAVMPFLKAILVNATD----KSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMS--LQGSQMETDDP 608 (1069)
Q Consensus 535 ~~~~~~~~~~i~~~l~~~l~~~~~----~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~--l~~~~~~~~~~ 608 (1069)
|-....-++.++|.+...+.-... .....+|-.|.-.+-.++++..+..+.|++..+...++. +.+.. --
T Consensus 411 GlLlps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDre----vn 486 (1133)
T KOG1943|consen 411 GLLLPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDRE----VN 486 (1133)
T ss_pred CCcchHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCch----hh
Confidence 212223567888888876643211 123457888777778888999888899998888877665 33321 12
Q ss_pred hhhHHHHHHHHHHHHhcCCcccchhhhhHHHHHhcccCCCccccCCCCccccccCCCcccchhhcCCceeeeccchHHHH
Q 001487 609 TTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEK 688 (1069)
Q Consensus 609 ~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k 688 (1069)
.|.++..+|.+.....|. .|+--.++. ..++ ++| ..+
T Consensus 487 cRRAAsAAlqE~VGR~~n--~p~Gi~Lis----~~dy--------------------------------~sV-----~~r 523 (1133)
T KOG1943|consen 487 CRRAASAALQENVGRQGN--FPHGISLIS----TIDY--------------------------------FSV-----TNR 523 (1133)
T ss_pred HhHHHHHHHHHHhccCCC--CCCchhhhh----hcch--------------------------------hhh-----hhh
Confidence 456665555554433322 111111111 1100 000 012
Q ss_pred HHHHHHHHHHHHHhhhcccccHHHHHHHHhhc-cCCcCChHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Q 001487 689 ATACNMLCCYADELKEGFFPWIDQVAPTLVPL-LKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDF 767 (1069)
Q Consensus 689 ~~a~~~l~~l~~~~~~~~~p~~~~~~~~l~~~-l~~~~~~~ir~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 767 (1069)
..+..-+..... .|..|...+++.++.. +.+ ++..+|..++.+|..|.... .+...+.
T Consensus 524 sNcy~~l~~~ia----~~~~y~~~~f~~L~t~Kv~H-Wd~~irelaa~aL~~Ls~~~----------------pk~~a~~ 582 (1133)
T KOG1943|consen 524 SNCYLDLCVSIA----EFSGYREPVFNHLLTKKVCH-WDVKIRELAAYALHKLSLTE----------------PKYLADY 582 (1133)
T ss_pred hhHHHHHhHHHH----hhhhHHHHHHHHHHhccccc-ccHHHHHHHHHHHHHHHHhh----------------HHhhccc
Confidence 222222333322 2566777777776655 443 68899999999998865432 1222335
Q ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHHHHHHhCCCC--CHHHHHHHHHH----HHHHHHHHHhhHHHHHHHhcCCCCChH
Q 001487 768 IIPALVEALHKEPDTEICASMLDSLNECIQISGPLL--DEGQVRSIVDE----IKQVITASSSRKRERAERAKAEDFDAE 841 (1069)
Q Consensus 768 i~~~l~~~~~~~~~~~v~~~~l~~l~~~i~~~~~~~--~~~~~~~~~~~----l~~~l~~~~~~~~~~~~~~~~e~~d~~ 841 (1069)
.+|++++.... .+...+-..+.+.++++..+-... .......-+.- +.+.......+.
T Consensus 583 ~L~~lld~~ls-~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg--------------- 646 (1133)
T KOG1943|consen 583 VLPPLLDSTLS-KDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPPICDRYFYRG--------------- 646 (1133)
T ss_pred chhhhhhhhcC-CChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHHHHHHhccc---------------
Confidence 56667766543 345666666777777776653211 11111111111 111111111100
Q ss_pred hhhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhchhhhHHHHHhhhh-hhhcCCCCHHHHHHHHHHHHHHHhHhhhhhhhh
Q 001487 842 ESELIKEENEQEEEVFDQVGEILGTLIKTFKAAFLPFFDELSSYLT-PMWGKDKTAEERRIAICIFDDVAEQCREAALKY 920 (1069)
Q Consensus 842 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~-~~l~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~ 920 (1069)
...-.+.+.+..+..+.-.-..-+..++..-+..++ +.+ ...+ ..|+.++..+++++...-.. .++
T Consensus 647 ----------~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l-~~~n-~i~~~av~av~~l~s~y~~~-d~~ 713 (1133)
T KOG1943|consen 647 ----------QGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNL-TLPN-QIRDAAVSAVSDLVSTYVKA-DEG 713 (1133)
T ss_pred ----------hHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhh-cchH-HHHHHHHHHHHHHHHHHHhc-Cch
Confidence 011233344444444433323222222222222222 332 2223 67888999999987653222 122
Q ss_pred h-HhHHHHHHhhccCC-ChhHHHhhhHHHHHHHhhcCCCchHHHHHH-HHHHHHhhcCCCCCChhhhhhHHHHHHHHHHH
Q 001487 921 Y-ETYLPFLLEACNDE-NQDVRQAAVYGLGVCAEFGGSVVKPLVGEA-LSRLNVVIRHPNALQPENLMAYDNAVSALGKI 997 (1069)
Q Consensus 921 ~-~~l~~~ll~~l~~~-~~~vr~~a~~~lg~l~~~~~~~~~~~~~~~-l~~L~~~l~~~~~~~~~~~~~~~~~~~~l~~i 997 (1069)
. ..++.-.+..+.+. +..+|+....++|.+....-+ -.+++. ...+.... | .+.....|.+.+.++.++
T Consensus 714 ~~~~li~~~ls~~~~~~~~~~r~g~~lal~~lp~~~i~---~~~q~~lc~~~l~~~--p---~d~~a~aR~~~V~al~~v 785 (1133)
T KOG1943|consen 714 EEAPLITRYLSRLTKCSEERIRRGLILALGVLPSELIH---RHLQEKLCKLVLELL--P---SDAWAEARQQNVKALAHV 785 (1133)
T ss_pred hhhHHHHHHHHHhcCchHHHHHHHHHHHHccCcHHhhc---hHHHHHHHHHHhccC--c---ccccHHHHHHHHHHHHHH
Confidence 2 24777778888775 788888888888887754332 222222 33322221 2 112568899999999999
Q ss_pred HhhcCCCC---CHhhHHHHHHhhCC-----CCCcHH--HHHHHHHHHHHHH
Q 001487 998 CQFHRDSI---DAAQVVPAWLNCLP-----IKGDLI--EAKIVHEQLCSMV 1038 (1069)
Q Consensus 998 ~~~~~~~~---~~~~~~~~~l~~lp-----~~~d~~--~~~~~~~~l~~l~ 1038 (1069)
+....... ..+++...+|++|. -.+|.. .++.++..+..+.
T Consensus 786 ~~~~~~~~~~~~~~k~~e~LL~~lddYttd~rGDVGswVReaAm~al~~~~ 836 (1133)
T KOG1943|consen 786 CKTVTSLLFSESIEKFRETLLNALDDYTTDSRGDVGSWVREAAMKALSSLL 836 (1133)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhhcccccCccHHHHHHHHHHHHHHhhh
Confidence 98877432 47889999998884 234432 3445555555444
No 49
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=99.08 E-value=7.2e-05 Score=84.31 Aligned_cols=321 Identities=14% Similarity=0.153 Sum_probs=169.6
Q ss_pred hhHhhhhHHHHHHHhhccCccccchhhHHHHHHHHHHHhhChhhhhhhHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHH
Q 001487 540 KYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWAR 619 (1069)
Q Consensus 540 ~~~~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 619 (1069)
.++..+...+...+..... ..+-.+++-+++..+.+.. ...+....+++..+... ..+...+++..++.++..
T Consensus 445 d~l~~l~~~~~~~l~~~e~---P~Ll~Ra~~~i~~fs~~~~--~~~~~~~~fl~~~v~~l--~~~~~~~~ki~a~~~~~~ 517 (1005)
T KOG2274|consen 445 DKLIELTIMIDNGLVYQES---PFLLLRAFLTISKFSSSTV--INPQLLQHFLNATVNAL--TMDVPPPVKISAVRAFCG 517 (1005)
T ss_pred HHHHHHHHHHHhhcccccC---HHHHHHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhh--ccCCCCchhHHHHHHHHh
Confidence 3445555555555443222 2344467777776655421 01122333343333321 223344577777666655
Q ss_pred HHHHhcCCcccchhhhhHHHHHhcccCCCccccCCCCccccccCCCcccchhhcCCceeeeccchHHHHHHHHHHHHHHH
Q 001487 620 LCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYA 699 (1069)
Q Consensus 620 l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~a~~~l~~l~ 699 (1069)
.+ -..-+.+++|.++..+++....-. ++ . . ..-+.+|+.++
T Consensus 518 ~~--~~~vl~~~~p~ild~L~qlas~~s-----------------~e-v------------l-------~llmE~Ls~vv 558 (1005)
T KOG2274|consen 518 YC--KVKVLLSLQPMILDGLLQLASKSS-----------------DE-V------------L-------VLLMEALSSVV 558 (1005)
T ss_pred cc--CceeccccchHHHHHHHHHccccc-----------------HH-H------------H-------HHHHHHHHHHh
Confidence 54 123377888888888877763210 00 0 0 11122333333
Q ss_pred HH-------hhhcccccHHHHHHHHhhccCCcCChHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHH
Q 001487 700 DE-------LKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPAL 772 (1069)
Q Consensus 700 ~~-------~~~~~~p~~~~~~~~l~~~l~~~~~~~ir~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l 772 (1069)
+. .+..+ .+.++..+.+.-+| +-+-..+-.++..++... . ...++....+|.+
T Consensus 559 ~~dpef~as~~skI---~P~~i~lF~k~s~D---P~V~~~~qd~f~el~q~~----~----------~~g~m~e~~iPsl 618 (1005)
T KOG2274|consen 559 KLDPEFAASMESKI---CPLTINLFLKYSED---PQVASLAQDLFEELLQIA----A----------NYGPMQERLIPSL 618 (1005)
T ss_pred ccChhhhhhhhcch---hHHHHHHHHHhcCC---chHHHHHHHHHHHHHHHH----H----------hhcchHHHHHHHH
Confidence 21 11122 23333444444333 334344444444443311 1 1335666788999
Q ss_pred HHHHccCCc---HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCCCChHhhhHhhhh
Q 001487 773 VEALHKEPD---TEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIKEE 849 (1069)
Q Consensus 773 ~~~~~~~~~---~~v~~~~l~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~ 849 (1069)
+..+....+ +..+.-++.-+..+++...+-+....+...++.+.++...+
T Consensus 619 isil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHs--------------------------- 671 (1005)
T KOG2274|consen 619 ISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHS--------------------------- 671 (1005)
T ss_pred HHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeec---------------------------
Confidence 988865431 23333344555555555444344444444444443333210
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhchhhh-------HHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHHhHhhhhhhhhhH
Q 001487 850 NEQEEEVFDQVGEILGTLIKTFKAAFLPF-------FDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYE 922 (1069)
Q Consensus 850 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-------~~~l~~~l~~~l~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~ 922 (1069)
++..++..+.+|+..++....+....+ +..++..+..+|+...+...-.++-..+..++.+.|..+.+.+.
T Consensus 672 --dD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~~~yImqV~sqLLdp~~sds~a~~VG~lV~tLit~a~~el~~n~d 749 (1005)
T KOG2274|consen 672 --DDHETLQNATECLRALISVTLEQLLTWHDEPGHNLWYIMQVLSQLLDPETSDSAAAFVGPLVLTLITHASSELGPNLD 749 (1005)
T ss_pred --CChHHHHhHHHHHHHHHhcCHHHHHhhccCCCccHHHHHHHHHHHcCCccchhHHHHHhHHHHHHHHHHHHHhchhHH
Confidence 123456678899998888755543221 22355555555544444444445556788888888888888999
Q ss_pred hHHHHHHhhccC-CChhHHHhhhHHHHHHHhhcC
Q 001487 923 TYLPFLLEACND-ENQDVRQAAVYGLGVCAEFGG 955 (1069)
Q Consensus 923 ~l~~~ll~~l~~-~~~~vr~~a~~~lg~l~~~~~ 955 (1069)
+|+..++..|.. +...+.++-++.++.+.....
T Consensus 750 ~IL~Avisrmq~ae~lsviQsLi~VfahL~~t~~ 783 (1005)
T KOG2274|consen 750 QILRAVISRLQQAETLSVIQSLIMVFAHLVHTDL 783 (1005)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhCCH
Confidence 999999988865 668888888888888776544
No 50
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.07 E-value=6.4e-07 Score=98.35 Aligned_cols=451 Identities=14% Similarity=0.189 Sum_probs=281.3
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHH--HHHHccCCCHHHHHHHHHHHHhhcccCCCCcccCCCHHHH
Q 001487 24 FETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKL--AHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQ 101 (1069)
Q Consensus 24 l~~ll~~~~s~d~~~r~~A~~~L~~~~~~~p~~~~~~L--~~il~~~~~~~~R~~a~i~L~~~i~~~~~~~w~~l~~~~~ 101 (1069)
+-.++.+..+.|.++++-..-+|.++.+.+|+-.+..+ +|---.++|+.+|..|...|..+= -+.+.|
T Consensus 73 Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALLSIntfQk~L~DpN~LiRasALRvlSsIR-------vp~IaP--- 142 (968)
T KOG1060|consen 73 FPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALLSINTFQKALKDPNQLIRASALRVLSSIR-------VPMIAP--- 142 (968)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceeeeHHHHHhhhcCCcHHHHHHHHHHHHhcc-------hhhHHH---
Confidence 44567778888889999999998888776776421111 111113788889988887775432 111222
Q ss_pred HHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCCChhHHHHHHHHHHHhhhhhhhhcchh
Q 001487 102 SSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPH 181 (1069)
Q Consensus 102 ~~i~~~ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~ 181 (1069)
.+.-.+-+... ++.+-||+.+|++|-++.+.+ + ++.+++...+..++.+.++.+...|..++..+|-+--+-+..+
T Consensus 143 -I~llAIk~~~~-D~s~yVRk~AA~AIpKLYsLd-~-e~k~qL~e~I~~LLaD~splVvgsAv~AF~evCPerldLIHkn 218 (968)
T KOG1060|consen 143 -IMLLAIKKAVT-DPSPYVRKTAAHAIPKLYSLD-P-EQKDQLEEVIKKLLADRSPLVVGSAVMAFEEVCPERLDLIHKN 218 (968)
T ss_pred -HHHHHHHHHhc-CCcHHHHHHHHHhhHHHhcCC-h-hhHHHHHHHHHHHhcCCCCcchhHHHHHHHHhchhHHHHhhHH
Confidence 22222223333 478899999999999997743 2 5667999999999999999999999999999887654555556
Q ss_pred HHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHh-hCCc----------c-------------hHhHHHhhHHHHHHHHH
Q 001487 182 LKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQC-LTSS----------A-------------DRDRFQDLLPLMMRTLT 237 (1069)
Q Consensus 182 ~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~-~~~~----------~-------------~~~~~~~~~~~~l~~l~ 237 (1069)
+..++.++. +- +.-=+...+..|...+.. +.++ . .+-....=+..+++...
T Consensus 219 yrklC~ll~----dv-deWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stk 293 (968)
T KOG1060|consen 219 YRKLCRLLP----DV-DEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTK 293 (968)
T ss_pred HHHHHhhcc----ch-hhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhcc
Confidence 666555543 32 223344566666665543 1111 0 00000111334666777
Q ss_pred HHHhCCChHHHHHHHHHHHHHHccccHHHHHhHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchh
Q 001487 238 ESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQ 317 (1069)
Q Consensus 238 ~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~ 317 (1069)
.++++.++.+..++++++-.++-.. ....++..+++.+.. +.+++...++.+..++. ..|+++ .+
T Consensus 294 pLl~S~n~sVVmA~aql~y~lAP~~------~~~~i~kaLvrLLrs---~~~vqyvvL~nIa~~s~---~~~~lF---~P 358 (968)
T KOG1060|consen 294 PLLQSRNPSVVMAVAQLFYHLAPKN------QVTKIAKALVRLLRS---NREVQYVVLQNIATISI---KRPTLF---EP 358 (968)
T ss_pred HHHhcCCcHHHHHHHhHHHhhCCHH------HHHHHHHHHHHHHhc---CCcchhhhHHHHHHHHh---cchhhh---hh
Confidence 7788889999999999888776422 234455555655532 34566677777777776 344332 23
Q ss_pred hHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCcchhhHHHHHHHHHHHcCCccchHHHHHHHHHhhcCCChHHHHHH
Q 001487 318 FINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAA 397 (1069)
Q Consensus 318 ~~~~l~~~l~~~l~~~~~~~~~~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aa 397 (1069)
|+++. .....|. ......-.+.|..++. ..-...+++-++.++++.+...--++
T Consensus 359 ~lKsF-------fv~ssDp---------------~~vk~lKleiLs~La~----esni~~ILrE~q~YI~s~d~~faa~a 412 (968)
T KOG1060|consen 359 HLKSF-------FVRSSDP---------------TQVKILKLEILSNLAN----ESNISEILRELQTYIKSSDRSFAAAA 412 (968)
T ss_pred hhhce-------EeecCCH---------------HHHHHHHHHHHHHHhh----hccHHHHHHHHHHHHhcCchhHHHHH
Confidence 33321 1111110 0011112234444442 44567788889999998887666677
Q ss_pred HHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhH
Q 001487 398 LIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRV 477 (1069)
Q Consensus 398 l~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v 477 (1069)
+.++|..+.... ..-+..+..++..++..+..|...+...+..+...-+.. ...++..+.+.++.-.-+..
T Consensus 413 V~AiGrCA~~~~----sv~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~-----h~~ii~~La~lldti~vp~A 483 (968)
T KOG1060|consen 413 VKAIGRCASRIG----SVTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAE-----HLEILFQLARLLDTILVPAA 483 (968)
T ss_pred HHHHHHHHHhhC----chhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHH-----HHHHHHHHHHHhhhhhhhhh
Confidence 778887665432 334566777788888888899999999998887654322 23455556666654334566
Q ss_pred HHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhHhhhHhhHhhhhHHHHHH
Q 001487 478 QAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAI 552 (1069)
Q Consensus 478 ~~~a~~al~~l~~~~~~~~~~~~l~~i~~~l~~~l~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~i~~~l~~~ 552 (1069)
|...+|.++..++.. ....+.++..+.+.+.+....+|-+++.....+.....++ ...+....++.
T Consensus 484 RA~IiWLige~~e~v-----pri~PDVLR~laksFs~E~~evKlQILnL~aKLyl~~~~~----~kll~~Yv~~L 549 (968)
T KOG1060|consen 484 RAGIIWLIGEYCEIV-----PRIAPDVLRKLAKSFSDEGDEVKLQILNLSAKLYLTNIDQ----TKLLVQYVFEL 549 (968)
T ss_pred hceeeeeehhhhhhc-----chhchHHHHHHHHhhccccchhhHHHHHhhhhheEechhh----HHHHHHHHHHH
Confidence 777778877777653 3467888999999999999999988888777665443333 34444455544
No 51
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.06 E-value=3.3e-08 Score=121.02 Aligned_cols=275 Identities=17% Similarity=0.176 Sum_probs=183.4
Q ss_pred hHHHHHHhhcCCChhHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhCCcchHh
Q 001487 144 LLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRD 223 (1069)
Q Consensus 144 ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~ 223 (1069)
-++.|.+.+.++++.+|..|+..|+.+.. +..++.|...|.|+ ++.||..|+.+|..+......
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~----------~~~~~~L~~aL~D~-d~~VR~~Aa~aL~~l~~~~~~----- 685 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETTP----------PGFGPALVAALGDG-AAAVRRAAAEGLRELVEVLPP----- 685 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhcc----------hhHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhccCc-----
Confidence 35677788889999999999998886531 23456677778887 899999999998877654311
Q ss_pred HHHhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHccccHHHHHhHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHH
Q 001487 224 RFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAE 303 (1069)
Q Consensus 224 ~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~ 303 (1069)
...+...++++++.+|..++..|..+..... ..++..+. +.+..+|..|+..+..+-.
T Consensus 686 ---------~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~-----------~~l~~~L~--D~d~~VR~~Av~aL~~~~~ 743 (897)
T PRK13800 686 ---------APALRDHLGSPDPVVRAAALDVLRALRAGDA-----------ALFAAALG--DPDHRVRIEAVRALVSVDD 743 (897)
T ss_pred ---------hHHHHHHhcCCCHHHHHHHHHHHHhhccCCH-----------HHHHHHhc--CCCHHHHHHHHHHHhcccC
Confidence 0123334556788999999988887542111 11233343 4567888888777664311
Q ss_pred hhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCcchhhHHHHHHHHHHHcCCccchHHHHHHHH
Q 001487 304 ARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLP 383 (1069)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~ 383 (1069)
+ . .+...+.+. +...+..+...|..+...- +...+.+.
T Consensus 744 -----~----------~----~l~~~l~D~-----------------~~~VR~~aa~aL~~~~~~~------~~~~~~L~ 781 (897)
T PRK13800 744 -----V----------E----SVAGAATDE-----------------NREVRIAVAKGLATLGAGG------APAGDAVR 781 (897)
T ss_pred -----c----------H----HHHHHhcCC-----------------CHHHHHHHHHHHHHhcccc------chhHHHHH
Confidence 0 1 112222111 1223444555555443211 11245566
Q ss_pred HhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHH
Q 001487 384 AYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLP 463 (1069)
Q Consensus 384 ~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~ 463 (1069)
..++++++.+|.+|+.+|+.+... +...+.+...|.|+++.||.+|+++|+.+. -+..++
T Consensus 782 ~ll~D~d~~VR~aA~~aLg~~g~~---------~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~-----------~~~a~~ 841 (897)
T PRK13800 782 ALTGDPDPLVRAAALAALAELGCP---------PDDVAAATAALRASAWQVRQGAARALAGAA-----------ADVAVP 841 (897)
T ss_pred HHhcCCCHHHHHHHHHHHHhcCCc---------chhHHHHHHHhcCCChHHHHHHHHHHHhcc-----------ccchHH
Confidence 788899999999999999877432 123355777889999999999999998753 134557
Q ss_pred HHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHH
Q 001487 464 ALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALAS 529 (1069)
Q Consensus 464 ~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~i~~~l~~~l~~~~~~v~~~al~~l~~ 529 (1069)
.|...|+| +++.||..|..+|..+ . --+...+.|...+++.+..||..|..+|..
T Consensus 842 ~L~~~L~D-~~~~VR~~A~~aL~~~----~------~~~~a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 842 ALVEALTD-PHLDVRKAAVLALTRW----P------GDPAARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred HHHHHhcC-CCHHHHHHHHHHHhcc----C------CCHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 78888899 8999999999998775 1 112346777788889999999999888764
No 52
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.06 E-value=7.8e-05 Score=83.11 Aligned_cols=714 Identities=13% Similarity=0.179 Sum_probs=345.7
Q ss_pred HHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCC--ChhHHHHHHHHHHHhhhh-hhhh-
Q 001487 102 SSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSD--SVKLQESAFLIFAQLSQY-IGDT- 177 (1069)
Q Consensus 102 ~~i~~~ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~~~~w~~ll~~l~~~~~~~--~~~~r~~al~~l~~l~~~-~~~~- 177 (1069)
+.+-+.+.+.+. +++.+|+.+-+++...... ..++ -.+.+.+.++ ++..|.+|...+...++. +.+.
T Consensus 5 e~l~~~l~qTl~--pdps~rk~aEr~L~~~e~q----~~y~---l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~ 75 (960)
T KOG1992|consen 5 ETLANYLLQTLS--PDPSVRKPAERALRSLEGQ----QNYP---LLLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIPAE 75 (960)
T ss_pred HHHHHHHHhcCC--CCCccCchHHHHHHHhccC----CCch---HHHHHHHhccCcChhHHHHHHHHHHHHHHhccCcCC
Confidence 344445555554 5788999888888755331 2333 3333443332 567888999889888873 3221
Q ss_pred -----cc-hhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhCCcchHhHHHhhHHHHHHHHHHHHhCCChHHHHHH
Q 001487 178 -----LT-PHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEA 251 (1069)
Q Consensus 178 -----~~-~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ 251 (1069)
+. ..-+.+-..+...+-+. ...++..--++++.+..+ .|.+-+|.+++.+...++++|..+-..+
T Consensus 76 ~~~~~i~~~~~e~ikslIv~lMl~s-~~~iQ~qlseal~~Ig~~--------DFP~kWptLl~dL~~~ls~~D~~~~~gV 146 (960)
T KOG1992|consen 76 DSPIKIIEEDREQIKSLIVTLMLSS-PFNIQKQLSEALSLIGKR--------DFPDKWPTLLPDLVARLSSGDFNVINGV 146 (960)
T ss_pred CCccccchhHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHhcc--------ccchhhHHHHHHHHhhccccchHHHHHH
Confidence 11 23455566666766665 567777666666655543 2455667777777777777776655555
Q ss_pred HHHHHHHHccccH-----HH----HHh-------HHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHhh-----hccch
Q 001487 252 LELLIELAGTEPR-----FL----RRQ-------LVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEAR-----ERAPG 310 (1069)
Q Consensus 252 ~~~l~~l~~~~~~-----~~----~~~-------~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~-----~~~~~ 310 (1069)
+..-..+-+.+.. .+ .-. +..++..+.......+.+...-..-++.+.-+++.. +..|+
T Consensus 147 L~tahsiFkr~R~efrSdaL~~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~~~~~~l~~lf~vlll~~klfysLn~QDiPE 226 (960)
T KOG1992|consen 147 LVTAHSIFKRYRPEFRSDALWLEIKLVLDRFAEPLTDLFRKTMELIQRHANDAAALNILFGVLLLICKLFYSLNFQDIPE 226 (960)
T ss_pred HHHHHHHHHhcCcccccHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhcccchH
Confidence 4444434433311 11 111 122222223333222223331112223222233320 11222
Q ss_pred hhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCcch----hhHHHHHHHHHHHcCCccchHHHHHHH---H
Q 001487 311 MMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNY----SVGQECLDRLAIALGGNTIVPVASEQL---P 383 (1069)
Q Consensus 311 ~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~e~ed~~~~~~~----~~a~~~l~~l~~~~~~~~~~~~l~~~l---~ 383 (1069)
.+.+.++..++...+++.+.... ... |+++.... ..-.+.+...+..+. +.+-|.+-.++ -
T Consensus 227 ---FFEdnm~~wM~~F~k~l~~~~p~--le~------~~ee~~~l~~lka~ICEi~~LY~~kYe-Eef~~fl~~fv~~~W 294 (960)
T KOG1992|consen 227 ---FFEDNMKTWMGAFHKLLTYDNPL--LES------DEEEATVLDKLKAQICEIFNLYATKYE-EEFQPFLPDFVTATW 294 (960)
T ss_pred ---HHHhhHHHHHHHHHHHHhccCcc--ccc------CcccccHHHHHHHHHHHHHHHHHHhhH-HHHHhhHHHHHHHHH
Confidence 22334555666666666643211 111 11121111 112223333444342 22222222222 2
Q ss_pred HhhcC--CChHHHHHH---HHHHHHHHhhcHHHHHHh--HHHHHHHHHhhCCCCChhHHHHHHHHHHHhHhhhchhHHhh
Q 001487 384 AYLAA--PEWQKHHAA---LIALAQIAEGCAKVMVKN--LEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQ 456 (1069)
Q Consensus 384 ~~l~~--~~~~~r~aa---l~~l~~l~~~~~~~~~~~--~~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 456 (1069)
..+.+ ++.+.-.-. +..|..+++... ...+ .+.++..+.+...=+|-..|..-- +-
T Consensus 295 ~LL~~~s~~~kyD~Lvs~Al~FLt~V~~r~~--y~~~F~~~~vl~~i~e~VvlpN~~lR~eDe---------------El 357 (960)
T KOG1992|consen 295 NLLVSTSPDTKYDYLVSKALQFLTSVSRRPH--YAELFEGENVLAQICEKVVLPNLILREEDE---------------EL 357 (960)
T ss_pred HHHHhcCCCccHHHHHHHHHHHHHHHHhhhh--hHhhhcchHHHHHHHHhhcccccccchhhH---------------HH
Confidence 23333 333322222 333333332211 0000 012222222222222222221111 11
Q ss_pred hhhhhHHHHHhhccCCCChh-HHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHh-hcC--ChhHHHHHHHHHHHHHH
Q 001487 457 FHPQVLPALAGAMDDFQNPR-VQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLL-QNG--KQMVQEGALTALASVAD 532 (1069)
Q Consensus 457 ~~~~il~~l~~~l~~~~~~~-v~~~a~~al~~l~~~~~~~~~~~~l~~i~~~l~~~l-~~~--~~~v~~~al~~l~~l~~ 532 (1069)
+-+..+..+-+-+.- .+.+ -|..||..+..++++++.. +.+.+..-++.++.-. .++ ++.-+..++..+.+++.
T Consensus 358 FED~pleYiRRDlEG-sDvdTRRR~a~dlvrgL~~~fe~~-vt~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talai 435 (960)
T KOG1992|consen 358 FEDNPLEYIRRDLEG-SDVDTRRRAAIDLVRGLCKNFEGQ-VTGVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAI 435 (960)
T ss_pred hccCHHHHHHHhccc-CCcchhHHHHHHHHHHHHHHhcch-hHHHHHHHHHHHHHHhccCCCccccccchhhhhhHHHHh
Confidence 223345555555554 3444 3577889999999988643 4566666666665533 233 46677788888888876
Q ss_pred hhHh------------hhHhhH-hhhhHHHHHHHhhccCccccchhhHHHHHHHHHHHhhChhhhhhhHHHHHHHHHHHh
Q 001487 533 SSQE------------HFQKYY-DAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQ 599 (1069)
Q Consensus 533 ~~~~------------~~~~~~-~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~l~ 599 (1069)
..+. +...|+ ..+.|.|.+ .+-.+...+|..+++-+-..-..+|++....+++.++..+
T Consensus 436 k~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s----~~vn~~pilka~aIKy~~~FR~ql~~~~lm~~~p~li~~L---- 507 (960)
T KOG1992|consen 436 KGQTAKHGVTSTNELVDVVDFFANQILPDLLS----PNVNEFPILKADAIKYIYTFRNQLGKEHLMALLPRLIRFL---- 507 (960)
T ss_pred hcchhhcceeeccccccHHHHHHHHhhHHhcc----CccccccchhhcccceeeeecccCChHHHHHHHHHHHHhc----
Confidence 5321 122333 445555443 2223344566666666555555556554444333333322
Q ss_pred cCCCCCCCchhhHHHHHHHHHHHHhcC---------CcccchhhhhHHHHHhcccCCCccccCCCCccccccCCCcccch
Q 001487 600 GSQMETDDPTTSYMLQAWARLCKCLGQ---------DFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMET 670 (1069)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 670 (1069)
.. ....+..|+..++..+-...++ ++.||+..++..+++.++...+. ++
T Consensus 508 ~a---~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~---------------En---- 565 (960)
T KOG1992|consen 508 EA---ESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKA---------------EN---- 565 (960)
T ss_pred cC---cchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCCccc---------------cc----
Confidence 21 1234666776666655443332 36677777777777766542210 00
Q ss_pred hhcCCceeeeccchHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHhhcc----CCcCChHHHHHHHHhHHHHHHHHHH
Q 001487 671 ITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLL----KFYFHEEVRKAAVSAMPELLRSAKL 746 (1069)
Q Consensus 671 ~~~~~~~~~v~~~~~~~k~~a~~~l~~l~~~~~~~~~p~~~~~~~~l~~~l----~~~~~~~ir~~a~~~l~~l~~~~~~ 746 (1069)
+.-++++-.+..-......|+.+.++..+...+ ..+.++.---.-.++++.+++....
T Consensus 566 ------------------eylmKaImRii~i~~~~i~p~~~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~ 627 (960)
T KOG1992|consen 566 ------------------EYLMKAIMRIISILQSAIIPHAPELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCK 627 (960)
T ss_pred ------------------HHHHHHHHHHHHhCHHhhhhhhhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhc
Confidence 112223333333344556666655555544332 2222444444555666655554321
Q ss_pred HHHcCCCCCCCHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhH
Q 001487 747 AIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRK 826 (1069)
Q Consensus 747 ~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~v~~~~l~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 826 (1069)
.++..+..+.+.++|.+...+.+|- .+..--++.-++.++...+. -.++...++++-+++. ...++
T Consensus 628 ---------~~~~~vs~~e~aL~p~fq~Il~eDI-~EfiPYvfQlla~lve~~~~-~ip~~~~~l~~~lLsp--~lW~r- 693 (960)
T KOG1992|consen 628 ---------ANPSAVSSLEEALFPVFQTILSEDI-QEFIPYVFQLLAVLVEHSSG-TIPDSYSPLFPPLLSP--NLWKR- 693 (960)
T ss_pred ---------cCchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCC-CCchhHHHHHHHhcCH--HHHhh-
Confidence 1344456666777887766666542 33444466777777777664 2333434444333211 00000
Q ss_pred HHHHHHhcCCCCChHhhhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhchh--hhHHHHHhhhhhhhcCCCCHHHHHHHHH
Q 001487 827 RERAERAKAEDFDAEESELIKEENEQEEEVFDQVGEILGTLIKTFKAAFL--PFFDELSSYLTPMWGKDKTAEERRIAIC 904 (1069)
Q Consensus 827 ~~~~~~~~~e~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~--~~~~~l~~~l~~~l~~~~~~~~r~~a~~ 904 (1069)
..-.-++..++.++.+..+..+. ..+..++..+-+++ .++..+. .++.
T Consensus 694 ---------------------------~gNipalvrLl~aflk~g~~~~~~~~~l~~iLGifqkLi-aSka~Dh--~GF~ 743 (960)
T KOG1992|consen 694 ---------------------------SGNIPALVRLLQAFLKTGSQIVEAADKLSGILGIFQKLI-ASKANDH--HGFY 743 (960)
T ss_pred ---------------------------cCCcHHHHHHHHHHHhcCchhhcccccchhHHHHHHHHh-cCcccch--hHHH
Confidence 01122355666677776665553 33444555554544 2333332 3566
Q ss_pred HHHHHHhHhhhhh-hhhhHhHHHHHHhhccCCC--hhHHHhhhHHHHHHHhhcCC
Q 001487 905 IFDDVAEQCREAA-LKYYETYLPFLLEACNDEN--QDVRQAAVYGLGVCAEFGGS 956 (1069)
Q Consensus 905 ~l~~l~~~~~~~~-~~~~~~l~~~ll~~l~~~~--~~vr~~a~~~lg~l~~~~~~ 956 (1069)
++..++.+.+... .||..+++..++++++.+. ..++.-..+..-..+..++.
T Consensus 744 LLn~i~~~~~~~~~~py~k~i~~llf~RlqnskT~kf~k~~~vF~~~~~ik~~~~ 798 (960)
T KOG1992|consen 744 LLNTIIESIPPNELAPYMKQIFGLLFQRLQNSKTEKFVKSFIVFFSLFTIKKGGL 798 (960)
T ss_pred HHHHHHhcCCHhhhhHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhhH
Confidence 7788887776653 5699999999999998754 45555555554445555554
No 53
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.06 E-value=1.6e-06 Score=98.55 Aligned_cols=424 Identities=16% Similarity=0.190 Sum_probs=251.5
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhhhcCc--hHH-HHHHHHHHccCCCHHHHHHHHHHHHhhcccCCCCcccCCCHH
Q 001487 23 PFETLISHLMSTSNEQRSEAELLFNLCKQQDP--DSL-TLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLH 99 (1069)
Q Consensus 23 ~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~~p--~~~-~~~L~~il~~~~~~~~R~~a~i~L~~~i~~~~~~~w~~l~~~ 99 (1069)
.....+..+.+. +.+.++...++......+ +.+ .+.++..+.++ +.+.-..+.-+|++++... -...
T Consensus 4 ~~~~~l~~l~~~--~~~~~~L~~l~~~~~~~~~l~~~~~~~lf~~L~~~-~~e~v~~~~~iL~~~l~~~-------~~~~ 73 (503)
T PF10508_consen 4 WINELLEELSSK--AERLEALPELKTELSSSPFLERLPEPVLFDCLNTS-NREQVELICDILKRLLSAL-------SPDS 73 (503)
T ss_pred HHHHHHHHHhcc--cchHHHHHHHHHHHhhhhHHHhchHHHHHHHHhhc-ChHHHHHHHHHHHHHHhcc-------CHHH
Confidence 455566666655 455555555544222122 111 23366667654 4444467778899988763 1233
Q ss_pred HHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCC---CchhhHHHHHHhhcCCChhHHHHHHHHHHHhhhhhhh
Q 001487 100 TQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPEN---GWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGD 176 (1069)
Q Consensus 100 ~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~~~---~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~ 176 (1069)
....+...+..+|.+ +++.+|..++..++.+++..-..- .-+++++.+..++.+++..+...|+.+|..++....
T Consensus 74 l~~~~~~~L~~gL~h-~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~- 151 (503)
T PF10508_consen 74 LLPQYQPFLQRGLTH-PSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPE- 151 (503)
T ss_pred HHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCch-
Confidence 367788888899997 799999999999998876531111 236899999999999999999999999999987532
Q ss_pred hcchh-HHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhCCcchHhHHHhhH-HHHHHHHHHHHhCCChHHHHHHHHH
Q 001487 177 TLTPH-LKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLL-PLMMRTLTESLNNGNEATAQEALEL 254 (1069)
Q Consensus 177 ~~~~~-~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~-~~~l~~l~~~l~~~~~~~~~~~~~~ 254 (1069)
.+... -+.+.+.+.+.+..+ +..+|..++.++..+...- .+.+.... ..+++.+...+.++|.-++..++++
T Consensus 152 ~~~~l~~~~~~~~L~~l~~~~-~~~vR~Rv~el~v~i~~~S-----~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalel 225 (503)
T PF10508_consen 152 GLEQLFDSNLLSKLKSLMSQS-SDIVRCRVYELLVEIASHS-----PEAAEAVVNSGLLDLLLKELDSDDILVQLNALEL 225 (503)
T ss_pred hHHHHhCcchHHHHHHHHhcc-CHHHHHHHHHHHHHHHhcC-----HHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHH
Confidence 11111 112256667777765 7789999999888887642 12222111 1355566666667777789999999
Q ss_pred HHHHHccccHHHHHhHH--HHHHHHHHHhcCCCcch---HHH-HHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHH
Q 001487 255 LIELAGTEPRFLRRQLV--DVVGSMLQIAEAESLEE---GTR-HLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMS 328 (1069)
Q Consensus 255 l~~l~~~~~~~~~~~~~--~l~~~l~~~~~~~~~~~---~~r-~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~ 328 (1069)
+..++.... - ..++. .+++.+...+.+.+.++ .+. ...+.+...++.. .|. .+....+.++..++.
T Consensus 226 l~~La~~~~-g-~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~---~~~---~v~~~~p~~~~~l~~ 297 (503)
T PF10508_consen 226 LSELAETPH-G-LQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARV---SPQ---EVLELYPAFLERLFS 297 (503)
T ss_pred HHHHHcChh-H-HHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhc---ChH---HHHHHHHHHHHHHHH
Confidence 999998332 1 22222 45555555554433333 111 2234566666652 221 111122333333333
Q ss_pred hhcCCCCCcccccCCCCCccccCCcchhhHHHHHHHHHHHcCCc--------cchHHHHHHHHHhhcCCChHHHHHHHHH
Q 001487 329 MLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGN--------TIVPVASEQLPAYLAAPEWQKHHAALIA 400 (1069)
Q Consensus 329 ~l~~~~~~~~~~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~--------~~~~~l~~~l~~~l~~~~~~~r~aal~~ 400 (1069)
.+... +.....+|.++++.++....+. .....++..+.....+.....|..++.+
T Consensus 298 ~~~s~-----------------d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~a 360 (503)
T PF10508_consen 298 MLESQ-----------------DPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHA 360 (503)
T ss_pred HhCCC-----------------ChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 22111 2234556777777776432112 2233455555566667778899999999
Q ss_pred HHHHHhhcHH----HHHHhHHHH--------HH-HHHhhCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHh
Q 001487 401 LAQIAEGCAK----VMVKNLEQV--------LS-MVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAG 467 (1069)
Q Consensus 401 l~~l~~~~~~----~~~~~~~~i--------~~-~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~ 467 (1069)
++.+.....+ .+....... .. .++..++.|-|.+|.++...+..++.+-.....-...+.++..++.
T Consensus 361 l~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg~~~i~~~~gfie~lld 440 (503)
T PF10508_consen 361 LASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWGQREICSSPGFIEYLLD 440 (503)
T ss_pred HHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHHHHHHHhCccHHhhhcC
Confidence 9999643322 111111111 12 6777788888999999999999998764322212346677777776
Q ss_pred hccCCCChhHHHHHHHHHHHhhh
Q 001487 468 AMDDFQNPRVQAHAASAVLNFSE 490 (1069)
Q Consensus 468 ~l~~~~~~~v~~~a~~al~~l~~ 490 (1069)
.-.+ +++..+..=...+..+.+
T Consensus 441 r~~E-~~K~~ke~K~~ii~~l~~ 462 (503)
T PF10508_consen 441 RSTE-TTKEGKEAKYDIIKALAK 462 (503)
T ss_pred CCCC-CCHHHHHHHHHHHHHHHh
Confidence 6666 566555443444444443
No 54
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=99.04 E-value=5.2e-07 Score=100.42 Aligned_cols=382 Identities=15% Similarity=0.157 Sum_probs=231.4
Q ss_pred HHHHHhhcCCCh---hHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhCCcc--
Q 001487 146 PFMFQCVSSDSV---KLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSA-- 220 (1069)
Q Consensus 146 ~~l~~~~~~~~~---~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~-- 220 (1069)
|.++..+.+.+. ...+..+.++..++..-. -+......++..+........+.......+.++..++.......
T Consensus 2 p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~~~-i~~~~~~~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~~~ 80 (415)
T PF12460_consen 2 PALLALLPDSDSSTDSNYERILEALAALSTSPQ-ILETLSIRLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDKQF 80 (415)
T ss_pred chHHhhCCCCCCcchhHHHHHHHHHHHHHCChh-HHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhccccccc
Confidence 555666654433 456677788887776521 12223445555555555544355666778888888877643322
Q ss_pred -hHhHHHh--hHHHHHHHHHHHHhCCC---hHHHHHHHHHHHHHHccccHHH-HHhHHHHHHHHHHH-----hcCCCc-c
Q 001487 221 -DRDRFQD--LLPLMMRTLTESLNNGN---EATAQEALELLIELAGTEPRFL-RRQLVDVVGSMLQI-----AEAESL-E 287 (1069)
Q Consensus 221 -~~~~~~~--~~~~~l~~l~~~l~~~~---~~~~~~~~~~l~~l~~~~~~~~-~~~~~~l~~~l~~~-----~~~~~~-~ 287 (1069)
....+.. ++|.+++.......... +.+...+...+..+++..+..- ...+..++..++.. ...... .
T Consensus 81 ~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~~~~~~~lf~~~~~~~~~~~~~~~~ 160 (415)
T PF12460_consen 81 EDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEILDELYSLFLSPKSFSPFQPSSSTI 160 (415)
T ss_pred chHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccccccCCCCcccccc
Confidence 2233333 67777776665433222 3333444444444444433221 22233444433300 000000 0
Q ss_pred hHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCcchhhHHHHHHHHHH
Q 001487 288 EGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAI 367 (1069)
Q Consensus 288 ~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~e~ed~~~~~~~~~a~~~l~~l~~ 367 (1069)
.......+-.+..+...- .+.. .+ +....++..++.......+ ...+..+.+++..+..
T Consensus 161 ~~~~~~~~~l~~~il~~l--~~~~--~~-~~~~~ll~~l~~~~~~~~~----------------~~~~~~~~~~la~LvN 219 (415)
T PF12460_consen 161 SEQQSRLVILFSAILCSL--RKDV--SL-PDLEELLQSLLNLALSSED----------------EFSRLAALQLLASLVN 219 (415)
T ss_pred ccccccHHHHHHHHHHcC--Cccc--Cc-cCHHHHHHHHHHHHHcCCC----------------hHHHHHHHHHHHHHHc
Confidence 001111222222232210 0000 11 1233345555444332221 1234566777888877
Q ss_pred HcCCccchHHHHHHHHHhh-cCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhH
Q 001487 368 ALGGNTIVPVASEQLPAYL-AAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLS 446 (1069)
Q Consensus 368 ~~~~~~~~~~l~~~l~~~l-~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~ 446 (1069)
.++....+..++..+...+ .+.+...|..++..+.+++.+.--...+....++..++..+.+ +.+...++.+++.+.
T Consensus 220 K~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~ 297 (415)
T PF12460_consen 220 KWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLATELLDKLLELLSS--PELGQQAAKAFGILL 297 (415)
T ss_pred CCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHh
Confidence 6654444555555555555 4556777888888888887764322224455677788888877 678888899988887
Q ss_pred hhhch------------hHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhc
Q 001487 447 TDLGP------------DLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQN 514 (1069)
Q Consensus 447 ~~~~~------------~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~i~~~l~~~l~~ 514 (1069)
...+. -....++..++|.+++..+. .+...+..-..||..++++.+...+.++++.++|.+++.++.
T Consensus 298 ~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~-~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~ 376 (415)
T PF12460_consen 298 SDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKE-ADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSL 376 (415)
T ss_pred cCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhh-cChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCC
Confidence 65321 11235688899999999888 566688888999999999999888999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHHhhHhhhHhhHhhhhHHHHHH
Q 001487 515 GKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAI 552 (1069)
Q Consensus 515 ~~~~v~~~al~~l~~l~~~~~~~~~~~~~~i~~~l~~~ 552 (1069)
++..++..++.++..+....++.+.+|++.++|.|.++
T Consensus 377 ~~~~v~~s~L~tL~~~l~~~~~~i~~hl~sLI~~LL~l 414 (415)
T PF12460_consen 377 PDADVLLSSLETLKMILEEAPELISEHLSSLIPRLLKL 414 (415)
T ss_pred CCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999888999999999988753
No 55
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.04 E-value=5.8e-08 Score=118.87 Aligned_cols=273 Identities=20% Similarity=0.218 Sum_probs=186.9
Q ss_pred HHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCCChhHHHHHHHHHHHhhhhhhhhcchhHHHH
Q 001487 106 SMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHL 185 (1069)
Q Consensus 106 ~~ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l 185 (1069)
..|++.|.+ +++.+|..++..++.+. -++.++.|.+.+.++++.+|..++..|..+.+..+..
T Consensus 624 ~~L~~~L~D-~d~~VR~~Av~~L~~~~--------~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~-------- 686 (897)
T PRK13800 624 AELAPYLAD-PDPGVRRTAVAVLTETT--------PPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPA-------- 686 (897)
T ss_pred HHHHHHhcC-CCHHHHHHHHHHHhhhc--------chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCch--------
Confidence 356677776 69999999999988653 2567899999999999999999999998875433221
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHHHhhCCcchHhHHHhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHccccHH
Q 001487 186 HAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRF 265 (1069)
Q Consensus 186 ~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~ 265 (1069)
+.+...|.++ ++.||..++.+|+.+-.. .. ..+...+.++++.+|..++..|..+-. .
T Consensus 687 -~~L~~~L~~~-d~~VR~~A~~aL~~~~~~-----~~-----------~~l~~~L~D~d~~VR~~Av~aL~~~~~--~-- 744 (897)
T PRK13800 687 -PALRDHLGSP-DPVVRAAALDVLRALRAG-----DA-----------ALFAAALGDPDHRVRIEAVRALVSVDD--V-- 744 (897)
T ss_pred -HHHHHHhcCC-CHHHHHHHHHHHHhhccC-----CH-----------HHHHHHhcCCCHHHHHHHHHHHhcccC--c--
Confidence 3455667776 999999999988865311 11 123345678899999999999987522 1
Q ss_pred HHHhHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCC
Q 001487 266 LRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETE 345 (1069)
Q Consensus 266 ~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~e 345 (1069)
+.+...+. +.+..+|..+...|..+... .+ ..++.+...+.+.
T Consensus 745 ---------~~l~~~l~--D~~~~VR~~aa~aL~~~~~~---~~-----------~~~~~L~~ll~D~------------ 787 (897)
T PRK13800 745 ---------ESVAGAAT--DENREVRIAVAKGLATLGAG---GA-----------PAGDAVRALTGDP------------ 787 (897)
T ss_pred ---------HHHHHHhc--CCCHHHHHHHHHHHHHhccc---cc-----------hhHHHHHHHhcCC------------
Confidence 11233343 45789999998887766441 10 1133344433221
Q ss_pred CccccCCcchhhHHHHHHHHHHHcCCccchHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHh
Q 001487 346 DEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLN 425 (1069)
Q Consensus 346 ~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~i~~~l~~ 425 (1069)
+ ..+...++..|...-. . +.+.+.+...+++++|.+|.+|..+|+.+.. +..++.|..
T Consensus 788 -----d---~~VR~aA~~aLg~~g~-~---~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~----------~~a~~~L~~ 845 (897)
T PRK13800 788 -----D---PLVRAAALAALAELGC-P---PDDVAAATAALRASAWQVRQGAARALAGAAA----------DVAVPALVE 845 (897)
T ss_pred -----C---HHHHHHHHHHHHhcCC-c---chhHHHHHHHhcCCChHHHHHHHHHHHhccc----------cchHHHHHH
Confidence 1 1233334444443322 1 1233456778899999999999999987642 234578888
Q ss_pred hCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHH
Q 001487 426 SFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLN 487 (1069)
Q Consensus 426 ~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~ 487 (1069)
.|+|+++.||..|+++|+.+. . -+...+.|...++| +++.||..|..+|..
T Consensus 846 ~L~D~~~~VR~~A~~aL~~~~--~--------~~~a~~~L~~al~D-~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 846 ALTDPHLDVRKAAVLALTRWP--G--------DPAARDALTTALTD-SDADVRAYARRALAH 896 (897)
T ss_pred HhcCCCHHHHHHHHHHHhccC--C--------CHHHHHHHHHHHhC-CCHHHHHHHHHHHhh
Confidence 999999999999999998851 1 12456667788888 899999999998863
No 56
>PRK09687 putative lyase; Provisional
Probab=99.02 E-value=1.2e-07 Score=98.02 Aligned_cols=252 Identities=15% Similarity=0.099 Sum_probs=164.8
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHHHhhCCcchHhHHHhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHccccHHH
Q 001487 187 AVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFL 266 (1069)
Q Consensus 187 ~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~ 266 (1069)
+.+...|.+. +..||..++.+|..+-.. ..+..+...++++++.+|..+.+.|+.+......
T Consensus 26 ~~L~~~L~d~-d~~vR~~A~~aL~~~~~~---------------~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~-- 87 (280)
T PRK09687 26 DELFRLLDDH-NSLKRISSIRVLQLRGGQ---------------DVFRLAIELCSSKNPIERDIGADILSQLGMAKRC-- 87 (280)
T ss_pred HHHHHHHhCC-CHHHHHHHHHHHHhcCcc---------------hHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc--
Confidence 4455566887 999999999998744321 2333344455688999999999999997642211
Q ss_pred HHhHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCC
Q 001487 267 RRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETED 346 (1069)
Q Consensus 267 ~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~e~ 346 (1069)
....++.+...+. .+.+..+|..+...+..++.. .+ ......++.+...+.+.
T Consensus 88 ---~~~a~~~L~~l~~-~D~d~~VR~~A~~aLG~~~~~---~~-------~~~~~a~~~l~~~~~D~------------- 140 (280)
T PRK09687 88 ---QDNVFNILNNLAL-EDKSACVRASAINATGHRCKK---NP-------LYSPKIVEQSQITAFDK------------- 140 (280)
T ss_pred ---hHHHHHHHHHHHh-cCCCHHHHHHHHHHHhccccc---cc-------ccchHHHHHHHHHhhCC-------------
Confidence 1233444443322 345688999999988877541 11 01122333333322211
Q ss_pred ccccCCcchhhHHHHHHHHHHHcCCccchHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhh
Q 001487 347 EDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNS 426 (1069)
Q Consensus 347 ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~i~~~l~~~ 426 (1069)
++..+..+...|.. ++ -+..++.+...+++++|.+|..|..+||.+... -+...+.|...
T Consensus 141 ----~~~VR~~a~~aLg~----~~----~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~--------~~~~~~~L~~~ 200 (280)
T PRK09687 141 ----STNVRFAVAFALSV----IN----DEAAIPLLINLLKDPNGDVRNWAAFALNSNKYD--------NPDIREAFVAM 200 (280)
T ss_pred ----CHHHHHHHHHHHhc----cC----CHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCC--------CHHHHHHHHHH
Confidence 11223333333322 22 245667777888899999999999999987322 23577788889
Q ss_pred CCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHH
Q 001487 427 FRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVS 506 (1069)
Q Consensus 427 l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~i~~ 506 (1069)
+.|+++.||..|.++|+.+. -+..+|.|++.+++ ++ ++..++.+|+.+-. +..+|
T Consensus 201 L~D~~~~VR~~A~~aLg~~~-----------~~~av~~Li~~L~~-~~--~~~~a~~ALg~ig~-----------~~a~p 255 (280)
T PRK09687 201 LQDKNEEIRIEAIIGLALRK-----------DKRVLSVLIKELKK-GT--VGDLIIEAAGELGD-----------KTLLP 255 (280)
T ss_pred hcCCChHHHHHHHHHHHccC-----------ChhHHHHHHHHHcC-Cc--hHHHHHHHHHhcCC-----------HhHHH
Confidence 99999999999999998843 13688888899988 54 56777788776632 24567
Q ss_pred HHHHHhh-cCChhHHHHHHHHHH
Q 001487 507 KLLVLLQ-NGKQMVQEGALTALA 528 (1069)
Q Consensus 507 ~l~~~l~-~~~~~v~~~al~~l~ 528 (1069)
.|..+++ +++..++..+.+++.
T Consensus 256 ~L~~l~~~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 256 VLDTLLYKFDDNEIITKAIDKLK 278 (280)
T ss_pred HHHHHHhhCCChhHHHHHHHHHh
Confidence 7777775 678889988888775
No 57
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.02 E-value=3.2e-05 Score=86.01 Aligned_cols=441 Identities=16% Similarity=0.202 Sum_probs=261.3
Q ss_pred HHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCCChhHHHHHHHHHHHhhhhhhhhc
Q 001487 99 HTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTL 178 (1069)
Q Consensus 99 ~~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~ 178 (1069)
+....+.+.+-+-|.+ ++.-+.-.+.-+++.|+.. .--+++.|.+.+.++++++.+|.-|..|...+....++
T Consensus 103 dvllLltNslknDL~s-~nq~vVglAL~alg~i~s~----EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~-- 175 (866)
T KOG1062|consen 103 DLLLLLTNSLKNDLNS-SNQYVVGLALCALGNICSP----EMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPD-- 175 (866)
T ss_pred HHHHHHHHHHHhhccC-CCeeehHHHHHHhhccCCH----HHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCch--
Confidence 3444555555555555 3444444444455555443 34588999999999999999999999999988887766
Q ss_pred chhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhCCcchHhHHHhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHH
Q 001487 179 TPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIEL 258 (1069)
Q Consensus 179 ~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~l~~l 258 (1069)
.++.+++.+.+.|.+. +..|-.+++..+..+++.-+ +....|.++++.++..|.+.....-+...
T Consensus 176 --l~e~f~~~~~~lL~ek-~hGVL~~~l~l~~e~c~~~~--~~l~~fr~l~~~lV~iLk~l~~~~yspey---------- 240 (866)
T KOG1062|consen 176 --LVEHFVIAFRKLLCEK-HHGVLIAGLHLITELCKISP--DALSYFRDLVPSLVKILKQLTNSGYSPEY---------- 240 (866)
T ss_pred --HHHHhhHHHHHHHhhc-CCceeeeHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHhcCCCCCcc----------
Confidence 3666677777788886 88898899998888887532 24566788888998888877654311100
Q ss_pred HccccHHHHHhHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcc
Q 001487 259 AGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPL 338 (1069)
Q Consensus 259 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~ 338 (1069)
.....-.|.++--+-.++++++.. +.+......+.|..++...+ ...+.-..++-.
T Consensus 241 --dv~gi~dPFLQi~iLrlLriLGq~--d~daSd~M~DiLaqvatntd-------sskN~GnAILYE------------- 296 (866)
T KOG1062|consen 241 --DVHGISDPFLQIRILRLLRILGQN--DADASDLMNDILAQVATNTD-------SSKNAGNAILYE------------- 296 (866)
T ss_pred --CccCCCchHHHHHHHHHHHHhcCC--CccHHHHHHHHHHHHHhccc-------ccccchhHHHHH-------------
Confidence 000111233321122233444322 34444555566666665311 111122222222
Q ss_pred cccCCCCCccccCCcchhhHHHHHHHHHHHcCCccchHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHH
Q 001487 339 WHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQ 418 (1069)
Q Consensus 339 ~~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~ 418 (1069)
|+..+....+...+....+..+-+++.+.+-+.|+.|+..|..++..-+.....|-
T Consensus 297 ----------------------~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr-- 352 (866)
T KOG1062|consen 297 ----------------------CVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHR-- 352 (866)
T ss_pred ----------------------HHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHH--
Confidence 33333322222334444566677788889999999999999999887766555554
Q ss_pred HHHHHHhhCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCccccc
Q 001487 419 VLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILT 498 (1069)
Q Consensus 419 i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~ 498 (1069)
..++.+|+|+++.+|..|+..+-.+.. ...+..++..++..|.. .++..+.....-+..+++.+.++. .
T Consensus 353 --~tIleCL~DpD~SIkrralELs~~lvn-------~~Nv~~mv~eLl~fL~~-~d~~~k~~~as~I~~laEkfaP~k-~ 421 (866)
T KOG1062|consen 353 --STILECLKDPDVSIKRRALELSYALVN-------ESNVRVMVKELLEFLES-SDEDFKADIASKIAELAEKFAPDK-R 421 (866)
T ss_pred --HHHHHHhcCCcHHHHHHHHHHHHHHhc-------cccHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHhcCCcc-h
Confidence 456678999999999999988766653 34567788888888887 678888888888888998887753 4
Q ss_pred CchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhHhhhHhhH-hhhhHHHHHHHhhccCccccchhhHHHHHHHHHHH
Q 001487 499 PYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYY-DAVMPFLKAILVNATDKSNRMLRAKSMECISLVGM 577 (1069)
Q Consensus 499 ~~l~~i~~~l~~~l~~~~~~v~~~al~~l~~l~~~~~~~~~~~~-~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~l~~ 577 (1069)
-|++.++ +.+......|+..+...+-.++.....+...|. ..++..+..... .+.+...+-..+.=|+|.-+.
T Consensus 422 W~idtml----~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~--~~is~e~l~qVa~W~IGEYGd 495 (866)
T KOG1062|consen 422 WHIDTML----KVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDTL--LDISQEPLLQVASWCIGEYGD 495 (866)
T ss_pred hHHHHHH----HHHHhcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhhh--hhhhhhhHHHHHHHHhhhhhH
Confidence 5555443 444444555666666666655554422222221 222222222110 011122333445567776663
Q ss_pred hh--C--h-hhhhhhHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHHHhcCC
Q 001487 578 AV--G--K-DKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQD 627 (1069)
Q Consensus 578 ~~--~--~-~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 627 (1069)
-+ | . +.....-..++..+....... ..+...+.+++.++..+...++..
T Consensus 496 lll~~~~~~~p~~vtesdivd~l~~v~~~~-~s~~~tk~yal~Al~KLSsr~~s~ 549 (866)
T KOG1062|consen 496 LLLDGANEEEPIKVTESDIVDKLEKVLMSH-SSDSTTKGYALTALLKLSSRFHSS 549 (866)
T ss_pred HhhcCccccCCCcCCHHHHHHHHHHHHHhc-cchHHHHHHHHHHHHHHHhhcccc
Confidence 21 1 1 111222344555555533221 123457888888887777666544
No 58
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=98.99 E-value=5.1e-09 Score=87.16 Aligned_cols=94 Identities=26% Similarity=0.350 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCC
Q 001487 393 KHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDF 472 (1069)
Q Consensus 393 ~r~aal~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~ 472 (1069)
.|.+++.+|++++.+.+..+..+++.|++.++..+.|++++||..||.+|..+++..+..+ -++++++++.+.+.+.|
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~-l~~f~~IF~~L~kl~~D- 79 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEI-LPYFNEIFDALCKLSAD- 79 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcC-
Confidence 5899999999999999999999999999999999999999999999999999999998888 57999999999999999
Q ss_pred CChhHHHHHHHHHHHhh
Q 001487 473 QNPRVQAHAASAVLNFS 489 (1069)
Q Consensus 473 ~~~~v~~~a~~al~~l~ 489 (1069)
++++||..| ..|.+++
T Consensus 80 ~d~~Vr~~a-~~Ld~ll 95 (97)
T PF12755_consen 80 PDENVRSAA-ELLDRLL 95 (97)
T ss_pred CchhHHHHH-HHHHHHh
Confidence 999998776 4555543
No 59
>PRK09687 putative lyase; Provisional
Probab=98.98 E-value=1.6e-07 Score=97.01 Aligned_cols=250 Identities=15% Similarity=0.118 Sum_probs=131.9
Q ss_pred HHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCCChhHHHHHHHHHHHhhhhhhhhcchhHHHHHH
Q 001487 108 LLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHA 187 (1069)
Q Consensus 108 ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~ 187 (1069)
|+..|.+ .+..+|..++..++.+. -++.++.+...++++++.+|..+..+|+.+-..-. .....++
T Consensus 28 L~~~L~d-~d~~vR~~A~~aL~~~~--------~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~-----~~~~a~~ 93 (280)
T PRK09687 28 LFRLLDD-HNSLKRISSIRVLQLRG--------GQDVFRLAIELCSSKNPIERDIGADILSQLGMAKR-----CQDNVFN 93 (280)
T ss_pred HHHHHhC-CCHHHHHHHHHHHHhcC--------cchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcc-----chHHHHH
Confidence 4445554 46667776666665432 14556666666667777777777777776543110 0223344
Q ss_pred HHHHh-hcCCCChHHHHHHHHHHHHHHHhhCCcchHhHHHhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHccccHHH
Q 001487 188 VFLNC-LTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFL 266 (1069)
Q Consensus 188 ~l~~~-l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~ 266 (1069)
.+... ++++ ++.||..|+.+|+.+-.... ...+..+..+...+.+.++.+|..+...|+.+..
T Consensus 94 ~L~~l~~~D~-d~~VR~~A~~aLG~~~~~~~---------~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~------ 157 (280)
T PRK09687 94 ILNNLALEDK-SACVRASAINATGHRCKKNP---------LYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND------ 157 (280)
T ss_pred HHHHHHhcCC-CHHHHHHHHHHHhccccccc---------ccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC------
Confidence 44433 3454 66777777777766532110 0112233334344445566666666665543321
Q ss_pred HHhHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCC
Q 001487 267 RRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETED 346 (1069)
Q Consensus 267 ~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~e~ 346 (1069)
...++.++..+.+ .+..+|..|...|..+.
T Consensus 158 ----~~ai~~L~~~L~d--~~~~VR~~A~~aLg~~~-------------------------------------------- 187 (280)
T PRK09687 158 ----EAAIPLLINLLKD--PNGDVRNWAAFALNSNK-------------------------------------------- 187 (280)
T ss_pred ----HHHHHHHHHHhcC--CCHHHHHHHHHHHhcCC--------------------------------------------
Confidence 1123333333322 23345555444333220
Q ss_pred ccccCCcchhhHHHHHHHHHHHcCCccchHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhh
Q 001487 347 EDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNS 426 (1069)
Q Consensus 347 ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~i~~~l~~~ 426 (1069)
.-.+...+.+...+++.+|.+|..|..+|+.+.. +..+|.|+..
T Consensus 188 --------------------------~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~----------~~av~~Li~~ 231 (280)
T PRK09687 188 --------------------------YDNPDIREAFVAMLQDKNEEIRIEAIIGLALRKD----------KRVLSVLIKE 231 (280)
T ss_pred --------------------------CCCHHHHHHHHHHhcCCChHHHHHHHHHHHccCC----------hhHHHHHHHH
Confidence 0012334445555667777777777777776432 2456667777
Q ss_pred CCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHH
Q 001487 427 FRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVL 486 (1069)
Q Consensus 427 l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~ 486 (1069)
+++++ +|..++.+||.+.. +..+|.|...++..++..|+..+..++.
T Consensus 232 L~~~~--~~~~a~~ALg~ig~-----------~~a~p~L~~l~~~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 232 LKKGT--VGDLIIEAAGELGD-----------KTLLPVLDTLLYKFDDNEIITKAIDKLK 278 (280)
T ss_pred HcCCc--hHHHHHHHHHhcCC-----------HhHHHHHHHHHhhCCChhHHHHHHHHHh
Confidence 77655 55667777776542 2466666666652267777777776664
No 60
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.95 E-value=1.5e-05 Score=88.03 Aligned_cols=392 Identities=13% Similarity=0.140 Sum_probs=209.5
Q ss_pred HHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCCChhHHHHHHHHHHHhhhhhhhhcchhHHHHHH
Q 001487 108 LLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHA 187 (1069)
Q Consensus 108 ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~ 187 (1069)
|.+.|.+..+...+.+.-++|+.||+. ..-.+++|.+.....+.+.+++...-.-|-.-++.-++. . --=+.
T Consensus 40 L~~lLdSnkd~~KleAmKRIia~iA~G----~dvS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdL-A---LLSIn 111 (968)
T KOG1060|consen 40 LKQLLDSNKDSLKLEAMKRIIALIAKG----KDVSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDL-A---LLSIN 111 (968)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHhcC----CcHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCc-e---eeeHH
Confidence 445566655666777777788888774 347788888888888888887765544444444433221 1 00134
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHHHHHhhCCcchHhHHHhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHccccHHHH
Q 001487 188 VFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLR 267 (1069)
Q Consensus 188 ~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~ 267 (1069)
.|.+.|.|+ ++-+|..|++++..+=- .-+.|.++-.+.++..+..+-+|+.|..++..+-...++.-.
T Consensus 112 tfQk~L~Dp-N~LiRasALRvlSsIRv-----------p~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~ 179 (968)
T KOG1060|consen 112 TFQKALKDP-NQLIRASALRVLSSIRV-----------PMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKD 179 (968)
T ss_pred HHHhhhcCC-cHHHHHHHHHHHHhcch-----------hhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHH
Confidence 566778887 88888888887764422 224456666677777777777888877777776554433222
Q ss_pred HhHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHhh--------hccchhhhcchhhHHH-HHHHHHHhhcCCCCCcc
Q 001487 268 RQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEAR--------ERAPGMMRKLPQFINR-LFAILMSMLLDIEDDPL 338 (1069)
Q Consensus 268 ~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~--------~~~~~~~~~~~~~~~~-l~~~l~~~l~~~~~~~~ 338 (1069)
.+.+++..++ .+ .+..+...|.-.+..+|-.. .+--....++..+-+- ++..|..+....--++
T Consensus 180 -qL~e~I~~LL---aD--~splVvgsAv~AF~evCPerldLIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P- 252 (968)
T KOG1060|consen 180 -QLEEVIKKLL---AD--RSPLVVGSAVMAFEEVCPERLDLIHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDP- 252 (968)
T ss_pred -HHHHHHHHHh---cC--CCCcchhHHHHHHHHhchhHHHHhhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCc-
Confidence 3333444333 22 23334333333333333210 0000000000011110 2222322221110000
Q ss_pred cccCCCCCccccC-CcchhhHHHHHHHHHHHcCC---ccchHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHH
Q 001487 339 WHSAETEDEDAGE-SSNYSVGQECLDRLAIALGG---NTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVK 414 (1069)
Q Consensus 339 ~~~~~~e~ed~~~-~~~~~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~ 414 (1069)
|..+. +-+++.. .+..... ...-+| +.-...+++....++.+.++.+-.|+..++..++...
T Consensus 253 ~~~~~-~~e~n~~~~~~~~~~-------~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~------ 318 (968)
T KOG1060|consen 253 TVVDS-SLEDNGRSCNLKDKY-------NEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKN------ 318 (968)
T ss_pred ccccc-ccccCcccccccccc-------cccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHH------
Confidence 00000 0000000 0000000 000011 2223445666666777888888888777777666432
Q ss_pred hHHHHHHHHHhhCCCCChhHHHHHHHHHHHhHhhhchhH-----------------------------HhhhhhhhHHHH
Q 001487 415 NLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDL-----------------------------QNQFHPQVLPAL 465 (1069)
Q Consensus 415 ~~~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~-----------------------------~~~~~~~il~~l 465 (1069)
....|+..+++.|+ .++.+|...+.++..++...+..+ ....+..|++.+
T Consensus 319 ~~~~i~kaLvrLLr-s~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~ 397 (968)
T KOG1060|consen 319 QVTKIAKALVRLLR-SNREVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILREL 397 (968)
T ss_pred HHHHHHHHHHHHHh-cCCcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHH
Confidence 33445555665554 345566666777666665432211 122345566666
Q ss_pred HhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhHhhhHhhHhhh
Q 001487 466 AGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAV 545 (1069)
Q Consensus 466 ~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~i~~~l~~~l~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~i 545 (1069)
...+.+ .+..+...+..+|+..+.... ..-+.++..|+.++.+.+..|...+...|..++..-+..-..++.++
T Consensus 398 q~YI~s-~d~~faa~aV~AiGrCA~~~~-----sv~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~h~~ii~~L 471 (968)
T KOG1060|consen 398 QTYIKS-SDRSFAAAAVKAIGRCASRIG-----SVTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAEHLEILFQL 471 (968)
T ss_pred HHHHhc-CchhHHHHHHHHHHHHHHhhC-----chhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHHHHHHHHHH
Confidence 667776 555677777888877766543 45677888889999888888888888888888877665433333333
Q ss_pred hH
Q 001487 546 MP 547 (1069)
Q Consensus 546 ~~ 547 (1069)
..
T Consensus 472 a~ 473 (968)
T KOG1060|consen 472 AR 473 (968)
T ss_pred HH
Confidence 33
No 61
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=98.94 E-value=4.1e-07 Score=89.70 Aligned_cols=351 Identities=14% Similarity=0.168 Sum_probs=216.0
Q ss_pred CCHHHHHHHHHHHHhhcccCCCCcccCCCHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCC---chhhH
Q 001487 69 PHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENG---WPELL 145 (1069)
Q Consensus 69 ~~~~~R~~a~i~L~~~i~~~~~~~w~~l~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~~~~---w~~ll 145 (1069)
.+-+-...|..-+++.+++. .-+.+.+-....+...+.+.+......-.+-.++-++..|++....... -..-+
T Consensus 83 dDie~q~qav~kFR~~LS~E---~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AV 159 (526)
T COG5064 83 DDIEQQLQAVYKFRKLLSKE---TSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAV 159 (526)
T ss_pred hHHHHHHHHHHHHHHHhccc---cCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCch
Confidence 45566677788899998875 2445666666778888888886433445667788889999886433211 13568
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHhhhhhhhhcchhH--HHHHHHHHHhhcCC-CChHHHHHHHHHHHHHHHhhCCcchH
Q 001487 146 PFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHL--KHLHAVFLNCLTNS-NNPDVKIAALNAVINFIQCLTSSADR 222 (1069)
Q Consensus 146 ~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~~~-~~~~vr~~a~~~l~~l~~~~~~~~~~ 222 (1069)
|.+++++.+++..+|+-+.-+|+.++-.... .+.++ ...+..++..+.+. .+..+-..+...|+.+...-..+.++
T Consensus 160 PlfiqlL~s~~~~V~eQavWALGNiAGDS~~-~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w 238 (526)
T COG5064 160 PLFIQLLSSTEDDVREQAVWALGNIAGDSEG-CRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDW 238 (526)
T ss_pred HHHHHHHcCchHHHHHHHHHHhccccCCchh-HHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCch
Confidence 9999999999999999999999999865432 22222 12333344444443 12355556778888887664333344
Q ss_pred hHHHhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHccccHHHHHhHH-HHHHHHHHHhcCCCcchHHHHHHHHHHHHH
Q 001487 223 DRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLV-DVVGSMLQIAEAESLEEGTRHLAIEFVITL 301 (1069)
Q Consensus 223 ~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l 301 (1069)
.... ..+..|..++...|+++...+++++..+.....+.+...++ .+...++..+.++ +..+..-++.....+
T Consensus 239 ~~is----qalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~--sa~iqtPalR~vGNI 312 (526)
T COG5064 239 SNIS----QALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHE--SAKIQTPALRSVGNI 312 (526)
T ss_pred HHHH----HHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCc--cccccCHHHHhhcCe
Confidence 4333 45556666666789999999999998887654444332221 1111122222111 111111111111110
Q ss_pred HHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCcchhhHHHHHHHHHHHcCCccchHHHHHH
Q 001487 302 AEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQ 381 (1069)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~ 381 (1069)
+ ...|+ ... ++ -.+| .++.
T Consensus 313 V-----------------------------TG~D~--------------QTq-------vi----I~~G-------~L~a 331 (526)
T COG5064 313 V-----------------------------TGSDD--------------QTQ-------VI----INCG-------ALKA 331 (526)
T ss_pred e-----------------------------ecCcc--------------cee-------hh----eecc-------cHHH
Confidence 0 01110 000 00 0111 3455
Q ss_pred HHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHH-HHHHHHHhhCCCCChhHHHHHHHHHHHhHhhh--chhHHhhh-
Q 001487 382 LPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLE-QVLSMVLNSFRDPHPRVRWAAINAIGQLSTDL--GPDLQNQF- 457 (1069)
Q Consensus 382 l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~-~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~--~~~~~~~~- 457 (1069)
+...++++....|.-+++.++.+..+..+.+...++ .++|.++..|...+-.+|..|||+++....+. .|.+ -.|
T Consensus 332 ~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~-iryL 410 (526)
T COG5064 332 FRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDI-IRYL 410 (526)
T ss_pred HHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchH-HHHH
Confidence 556688888899999999999999888877766665 58899999999999999999999999876554 2222 122
Q ss_pred -hhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcC
Q 001487 458 -HPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENC 492 (1069)
Q Consensus 458 -~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~ 492 (1069)
.+.++..|+..|.- .+.++-+-+..++..++...
T Consensus 411 v~qG~IkpLc~~L~~-~dNkiiev~LD~~eniLk~G 445 (526)
T COG5064 411 VSQGFIKPLCDLLDV-VDNKIIEVALDAIENILKVG 445 (526)
T ss_pred HHccchhHHHHHHhc-cCccchhhhHHHHHHHHhhh
Confidence 34567777777776 44445566677777776543
No 62
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.94 E-value=1.9e-07 Score=107.08 Aligned_cols=302 Identities=17% Similarity=0.240 Sum_probs=192.2
Q ss_pred hHHHHHHhhcCC-ChhHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhCCcc--
Q 001487 144 LLPFMFQCVSSD-SVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSA-- 220 (1069)
Q Consensus 144 ll~~l~~~~~~~-~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~-- 220 (1069)
+++.+..++.+= ..+.+..|+.+|..+.....++. .++.++|.++.++.|+ ...||..|+.+|..++....+..
T Consensus 423 ~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~--~LDRVlPY~v~l~~Ds-~a~Vra~Al~Tlt~~L~~Vr~~~~~ 499 (1431)
T KOG1240|consen 423 FVSVLTSCIRALKTIQTKLAALELLQELSTYIDDEV--KLDRVLPYFVHLLMDS-EADVRATALETLTELLALVRDIPPS 499 (1431)
T ss_pred eHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHH--HHhhhHHHHHHHhcCc-hHHHHHHHHHHHHHHHhhccCCCcc
Confidence 455555555432 34567788999998888766543 5889999999999998 99999999999999887764321
Q ss_pred hHhHHHhhHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHccccHHHHHhHHHHHHHHHHHhcC-CCcchHHHHHHHHHH
Q 001487 221 DRDRFQDLLPLMMRTLTESLNN-GNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEA-ESLEEGTRHLAIEFV 298 (1069)
Q Consensus 221 ~~~~~~~~~~~~l~~l~~~l~~-~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~r~~a~~~l 298 (1069)
+...|.+ .++..|..++.+ ....+|.....+|..++...+.++.-- .. +...+. .+.+.+.
T Consensus 500 daniF~e---YlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~-q~-----~~~~g~~n~~nset-------- 562 (1431)
T KOG1240|consen 500 DANIFPE---YLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELT-QE-----LRQAGMLNDPNSET-------- 562 (1431)
T ss_pred cchhhHh---hhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHH-HH-----HHhcccccCccccc--------
Confidence 2222332 455556666655 445677777888888887655443211 00 111100 1111110
Q ss_pred HHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCcchhhHHHHHHHHHHHcCCccchHHH
Q 001487 299 ITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVA 378 (1069)
Q Consensus 299 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l 378 (1069)
..+. ....-...+...++..+..| +.+. ....+++..+.+..|+..+|...--..+
T Consensus 563 --~~~~--~~~~~~~~L~~~V~~~v~sL---lsd~-----------------~~~Vkr~Lle~i~~LC~FFGk~ksND~i 618 (1431)
T KOG1240|consen 563 --APEQ--NYNTELQALHHTVEQMVSSL---LSDS-----------------PPIVKRALLESIIPLCVFFGKEKSNDVI 618 (1431)
T ss_pred --cccc--ccchHHHHHHHHHHHHHHHH---HcCC-----------------chHHHHHHHHHHHHHHHHhhhcccccch
Confidence 0000 00000001111222222222 2221 1123445555678888888866667788
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhHhhhchhHHhhhh
Q 001487 379 SEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFH 458 (1069)
Q Consensus 379 ~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 458 (1069)
++++..++++.+|..|-+-+..+..++-..+.. ..-+-++|.+.++|.|+.+.|...|+.++..+++. ..+.+.++
T Consensus 619 LshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~r--s~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~--~ll~K~~v 694 (1431)
T KOG1240|consen 619 LSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWR--SVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKL--GLLRKPAV 694 (1431)
T ss_pred HHHHHHHhcCccHHHHHHHHhhccceEEEEeee--eHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHh--cccchHHH
Confidence 999999999999999998776666544332210 01234789999999999999999999999998874 22335667
Q ss_pred hhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCc
Q 001487 459 PQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTP 494 (1069)
Q Consensus 459 ~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~ 494 (1069)
-+++..+...|-. |+.-+|.+++..+....+.++.
T Consensus 695 ~~i~~~v~PlL~h-PN~WIR~~~~~iI~~~~~~ls~ 729 (1431)
T KOG1240|consen 695 KDILQDVLPLLCH-PNLWIRRAVLGIIAAIARQLSA 729 (1431)
T ss_pred HHHHHhhhhheeC-chHHHHHHHHHHHHHHHhhhhh
Confidence 7788888888888 9999999999999888876653
No 63
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=98.93 E-value=4.2e-05 Score=98.04 Aligned_cols=545 Identities=16% Similarity=0.241 Sum_probs=301.8
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhHhhhchhHH--
Q 001487 377 VASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQ-- 454 (1069)
Q Consensus 377 ~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~-- 454 (1069)
.-...+.+++.+..-..|++|......+....+....+++..++..++..+.|+++.+|..|+.++.......+....
T Consensus 134 ~~~k~~~ew~~~~~~~~~~~a~~~~~~l~~~~P~~~~~~~~~~~~~i~~~~~~~~~~i~~~a~~al~~~~~~~~~~~~~~ 213 (2341)
T KOG0891|consen 134 FEVKRLIEWLGERQEYRRLAAVLIIKELADNVPTFFYPYVNKFFKNIFAALRDPKPAIRLQACSALHAVLSSLAQREAKL 213 (2341)
T ss_pred HHHHHHHHHhhhhhhhhhHHHHHhhhhHhhcCcHHHHHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHhhhhhccchh
Confidence 333444455555566778999999999999999999999999999999999999999999999998877655543220
Q ss_pred -hhhhhhhHHHHHhhccCCCChh------------------------HHHHHHHH---------------HHHhhhcCCc
Q 001487 455 -NQFHPQVLPALAGAMDDFQNPR------------------------VQAHAASA---------------VLNFSENCTP 494 (1069)
Q Consensus 455 -~~~~~~il~~l~~~l~~~~~~~------------------------v~~~a~~a---------------l~~l~~~~~~ 494 (1069)
.+.+...+...-..+.+ +... .+...+.. +..+......
T Consensus 214 ~~~~~~rcvd~~~~~l~~-~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~lk~~~i~~~l~~~~~~~~~~~~~ 292 (2341)
T KOG0891|consen 214 KPQWYQRCVDEARHGLSS-DGVKIHASLLVYNELLRISDPFLEKYDSTCVRQAKGKLLKSIVIRMTLSQILPLLAAFNPA 292 (2341)
T ss_pred hhHHHHHHHHhccccccc-hHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccccHHHHHHhccHHHhhhhhh
Confidence 01122222222222222 1100 11111000 0000000000
Q ss_pred ccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhHhhhHhhHhhhhHHHHHHHhhccCccccchhhHHHHHHHH
Q 001487 495 EILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISL 574 (1069)
Q Consensus 495 ~~~~~~l~~i~~~l~~~l~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~ 574 (1069)
..-..|+...+..++..+... +..++..++.++...+..+.+|...+...+.+.+....-...+. -...+.|++.
T Consensus 293 ~~~~~~l~~~~~~~l~~~~~~----~~~~~~~i~~ia~al~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~ 367 (2341)
T KOG0891|consen 293 KFQVKYLHTEMDHLLSILRKE----KTRAFVSIGEIAVALGSSMSPYLSNILDHIRQTLPTKDLARKKF-EKSVFTCIGL 367 (2341)
T ss_pred hhHHHHHHHHHHHHHHhhhcc----chhHHHHHHHHHHHhhhhhhhhhcchhhhhhhcchhhhHHHHhc-chhHHHHHHH
Confidence 001134555556666555522 26688889999999999988888776655555443311111111 1225789999
Q ss_pred HHHhhChhhhhhhHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHHHhcCCcccchhhhhHHHHHhccc----C----
Q 001487 575 VGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQL----K---- 646 (1069)
Q Consensus 575 l~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~~~~----~---- 646 (1069)
++.++++..+......+++.+.. .. ......+++-.++..++ +..+.+.+.++..... .
T Consensus 368 ~~~a~~~~~~~~~~~~il~~~~~---~~------~~~~l~e~l~~l~~rl~----~l~~~i~~rll~~~~~vl~~~a~~~ 434 (2341)
T KOG0891|consen 368 LASALGPADQKDLNKDILEQMFK---CT------LSDSLLERLFILSQRIP----KLGQSIQDRLLNMTSQVLSGKAFIQ 434 (2341)
T ss_pred HhhccCHHHHHhHHHHHHHHHhc---CC------chHHHHHHHHHHHHhcc----chhhHHHHHHHHHHHHHHhCccccC
Confidence 99999976555544666655443 11 12344445555555544 3344444444443321 1
Q ss_pred CCc-cc---cCCCCccccccCCCcccchhhcCCceeeeccchHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHhhccC
Q 001487 647 PDV-TI---TSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLK 722 (1069)
Q Consensus 647 ~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~a~~~l~~l~~~~~~~~~p~~~~~~~~l~~~l~ 722 (1069)
+.. .+ ..-... ... +.-...+ .-+.|+.+++.+... +.....++.+++...+..
T Consensus 435 ~~~~~vl~~~~~p~~-~~~--------------~~~~~~~----~~~~a~~~l~~~~~~-~~~~~~~~~~~~~~~~~~-- 492 (2341)
T KOG0891|consen 435 PGQFTVLPKLAIPKA-ILQ--------------KTGDSTD----DIQLAFKTLGGFKFS-GYSLTLFVQQCVDSYLEA-- 492 (2341)
T ss_pred ccccCccchhcccch-hhh--------------hcccccH----HHHHHHHHHhhhhhh-hhhHHHHHHHHHHHHHhc--
Confidence 100 00 000000 000 0000000 124577778877543 222334455555444432
Q ss_pred CcCChHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHH-HH---
Q 001487 723 FYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECI-QI--- 798 (1069)
Q Consensus 723 ~~~~~~ir~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~v~~~~l~~l~~~i-~~--- 798 (1069)
.++++|+.+..++..++.....+.++. +. .-+++..++..+......++++.++..++.++.+.. ..
T Consensus 493 --~~~e~r~~~~l~~~~ll~~~~~~~~~~------~~-~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~~~~~~~laQ 563 (2341)
T KOG0891|consen 493 --DDSEIRKNAALTCCELLKYDIICSQTS------PH-ALQVVKEVLSALLTVAIADTDPDIRIRVLSSLNERFDAQLAQ 563 (2341)
T ss_pred --ccHHHHHHHHHHHHHHHhhhhhhhccc------ch-HHHHHHHHHHHHHHHhccCCCcchhhhHHhhhccchhhhhcC
Confidence 378999999999888887654432221 11 113456666666666667777777766666655111 00
Q ss_pred -------------------------hCC--CCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCCCChHhhhHhhhhhh
Q 001487 799 -------------------------SGP--LLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIKEENE 851 (1069)
Q Consensus 799 -------------------------~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~~ 851 (1069)
.|+ ..+|..+-+-+.. ........ -+.+
T Consensus 564 ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~---~~l~~~s~----------l~~s------------ 618 (2341)
T KOG0891|consen 564 PDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRK---TLLELLTE----------LEFS------------ 618 (2341)
T ss_pred chhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHH---HHHHHhch----------hhhc------------
Confidence 110 0111111110000 00000000 0000
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhchhhhHHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHHhHhhhhhhhhhHhHHHHHHhh
Q 001487 852 QEEEVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEA 931 (1069)
Q Consensus 852 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~l~~~ll~~ 931 (1069)
.-..+....+..+..++...+....+|...++-+++..+.+ .+..+-..++.++++++...|.....+...+++.+.+.
T Consensus 619 g~~r~~~~~a~~~~~~i~~~~~~i~~~v~~~l~~~~~~~~~-~~s~~~~~~~~~~~eL~~v~g~~~~~~~~~~~~~~~~~ 697 (2341)
T KOG0891|consen 619 GMARTKEESAKLLCELIISSPVLISPYVGPILLVLLPKLQD-PSSGVEKAVLETIGELCAVGGEEMVKWVDELFSLIIKM 697 (2341)
T ss_pred chHHhHHHHHHHhhHHHHHHHHHHHhhcCchHHHHHHHHhc-cchhhHHHHHHHHHHHHHhccchhhhccchHHHHHHHH
Confidence 00011112334445555555566677777777777777643 33355566789999999999977666777888999998
Q ss_pred ccC-CChhHHHhhhHHHHHHHhhcCCCchHH--HHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHHHHHhhcC
Q 001487 932 CND-ENQDVRQAAVYGLGVCAEFGGSVVKPL--VGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQFHR 1002 (1069)
Q Consensus 932 l~~-~~~~vr~~a~~~lg~l~~~~~~~~~~~--~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~~~ 1002 (1069)
+.+ .....|+++.+++|.+....+-.+.|+ +|.++..+.+.+.... ...+|.-++..+|......|
T Consensus 698 l~~~s~~~rr~aslk~l~~l~s~~~~~v~p~~~~P~ll~~l~~~~~te~-----~~~ir~~~v~~~g~~g~~d~ 766 (2341)
T KOG0891|consen 698 LQDQSSLGKRLAALKALGQLESSTGYVVDPYLDYPELLDILINILKTEQ-----SSTIRREAIRLLGLLGALDP 766 (2341)
T ss_pred HHHhhhhhchhHHHHHhhhhhcccceEecccccChHHHHHHHHHHhHhh-----hhHHHHHHHHHhhhhcccch
Confidence 877 457889999999999999998877776 6888888888876542 34667777777775554443
No 64
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=98.91 E-value=0.00034 Score=79.38 Aligned_cols=237 Identities=14% Similarity=0.135 Sum_probs=166.4
Q ss_pred chHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHhhccCCcCChHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHH
Q 001487 683 SVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVK 762 (1069)
Q Consensus 683 ~~~~~k~~a~~~l~~l~~~~~~~~~p~~~~~~~~l~~~l~~~~~~~ir~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 762 (1069)
+....++.|+..+..+.+..-..-.|-...+...++..++ ++++-..+.+++.-+..-......+..+.....-+.+
T Consensus 786 gs~dls~~al~~l~Wv~KaLl~R~~~~s~~ia~klld~Ls---~~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQ 862 (1030)
T KOG1967|consen 786 GSLDLSEIALTVLAWVTKALLLRNHPESSEIAEKLLDLLS---GPSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQ 862 (1030)
T ss_pred CCcchhhHHHHHHHHHHHHHHHcCCcccchHHHHHHHhcC---CccccchHHHhhHhhhccChHHhhhccccchhHHHHH
Confidence 3345567788888888777655555666667777777776 4677778888877665533221111111111234667
Q ss_pred HHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCCCChHh
Q 001487 763 QLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEE 842 (1069)
Q Consensus 763 ~~~~~i~~~l~~~~~~~~~~~v~~~~l~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~e~~d~~~ 842 (1069)
+.+..++|.++..+...+ .......+.++..+++.+. .+.+-+-++.+.++|.+.+.-
T Consensus 863 RfF~~ivP~l~~~~~t~~-~~~K~~yl~~LshVl~~vP----~~vllp~~~~LlPLLLq~Ls~----------------- 920 (1030)
T KOG1967|consen 863 RFFCDIVPILVSKFETAP-GSQKHNYLEALSHVLTNVP----KQVLLPQFPMLLPLLLQALSM----------------- 920 (1030)
T ss_pred HHHHhhHHHHHHHhccCC-ccchhHHHHHHHHHHhcCC----HHhhccchhhHHHHHHHhcCC-----------------
Confidence 888999999999988432 3455567888888888654 345555667777777654321
Q ss_pred hhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhchhhhHHHHHhhhhhhhcCCCC--HHHHHHHHHHHHHHHhHhhhhh-hh
Q 001487 843 SELIKEENEQEEEVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKT--AEERRIAICIFDDVAEQCREAA-LK 919 (1069)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~--~~~r~~a~~~l~~l~~~~~~~~-~~ 919 (1069)
.+-.++-....++..+....+.-.-.|+.+++|.++..-++.++ ..+|..|+.+++.+.+..+... .+
T Consensus 921 ---------~D~~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~ 991 (1030)
T KOG1967|consen 921 ---------PDVIVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLS 991 (1030)
T ss_pred ---------CccchhhhHhhhhhHHHHhccccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCccccc
Confidence 11234455778888888888888888999999999887543332 4679999999999999777654 46
Q ss_pred hhHhHHHHHHhhccCCChhHHHhhhHHHHHHHhh
Q 001487 920 YYETYLPFLLEACNDENQDVRQAAVYGLGVCAEF 953 (1069)
Q Consensus 920 ~~~~l~~~ll~~l~~~~~~vr~~a~~~lg~l~~~ 953 (1069)
|.++++..+.+.+.|+...||..|+.+=+.+..-
T Consensus 992 fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W~~l 1025 (1030)
T KOG1967|consen 992 FRPLVLRALIKILDDKKRLVRKEAVDTRQNWYML 1025 (1030)
T ss_pred ccHHHHHHhhhccCcHHHHHHHHHHHHhhhhhhc
Confidence 9999999999999999999999999887766543
No 65
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.87 E-value=1.3e-07 Score=96.69 Aligned_cols=190 Identities=21% Similarity=0.322 Sum_probs=137.0
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHHHhhc-----HHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhHhhhchhH
Q 001487 379 SEQLPAYLAAPEWQKHHAALIALAQIAEGC-----AKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDL 453 (1069)
Q Consensus 379 ~~~l~~~l~~~~~~~r~aal~~l~~l~~~~-----~~~~~~~~~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~ 453 (1069)
...+...-.+.+|..|..++.-|..++.+. ...+...+..++..+...+.|....|...|+.+++.++..++..+
T Consensus 9 ~~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~ 88 (228)
T PF12348_consen 9 LAALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHF 88 (228)
T ss_dssp -TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGG
T ss_pred HHHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhH
Confidence 344444456789999999999999998876 234445566677888899999999999999999999999999987
Q ss_pred HhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHH-HHHHHHHhhcCChhHHHHHHHHHHHHHH
Q 001487 454 QNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGI-VSKLLVLLQNGKQMVQEGALTALASVAD 532 (1069)
Q Consensus 454 ~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~i-~~~l~~~l~~~~~~v~~~al~~l~~l~~ 532 (1069)
.++.+.++|.|++.+.+ ++..++..|..+|..+++.++ +.+.+ .+.+....++.++.+|..++.++..++.
T Consensus 89 -~~~~~~~l~~Ll~~~~~-~~~~i~~~a~~~L~~i~~~~~------~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~ 160 (228)
T PF12348_consen 89 -EPYADILLPPLLKKLGD-SKKFIREAANNALDAIIESCS------YSPKILLEILSQGLKSKNPQVREECAEWLAIILE 160 (228)
T ss_dssp -HHHHHHHHHHHHHGGG----HHHHHHHHHHHHHHHTTS-------H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHT
T ss_pred -HHHHHHHHHHHHHHHcc-ccHHHHHHHHHHHHHHHHHCC------cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 78999999999999999 888999999999999998765 22334 6777778889999999999999999998
Q ss_pred hhH---hhhHh--hHhhhhHHHHHHHhhccCccccchhhHHHHHHHHHHHhhC
Q 001487 533 SSQ---EHFQK--YYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVG 580 (1069)
Q Consensus 533 ~~~---~~~~~--~~~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~ 580 (1069)
..+ ..+.. .++.+.+.+...+.+ ....+|..|-+++..+...+|
T Consensus 161 ~~~~~~~~l~~~~~~~~l~~~l~~~l~D----~~~~VR~~Ar~~~~~l~~~~~ 209 (228)
T PF12348_consen 161 KWGSDSSVLQKSAFLKQLVKALVKLLSD----ADPEVREAARECLWALYSHFP 209 (228)
T ss_dssp T-----GGG--HHHHHHHHHHHHHHHTS----S-HHHHHHHHHHHHHHHHHH-
T ss_pred HccchHhhhcccchHHHHHHHHHHHCCC----CCHHHHHHHHHHHHHHHHHCC
Confidence 888 44433 357788887777654 345689999999999887777
No 66
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.82 E-value=0.0011 Score=79.43 Aligned_cols=131 Identities=13% Similarity=0.110 Sum_probs=97.0
Q ss_pred HHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhc
Q 001487 435 RWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQN 514 (1069)
Q Consensus 435 r~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~i~~~l~~~l~~ 514 (1069)
+..|.+..-.++.. ..+ ...++.++..++..+.. +...+|..|..+|..+++.-+ .. -..+.+-..+..-+.+
T Consensus 794 ~~~a~li~~~la~~--r~f-~~sfD~yLk~Il~~l~e-~~ialRtkAlKclS~ive~Dp-~v--L~~~dvq~~Vh~R~~D 866 (1692)
T KOG1020|consen 794 DDDAKLIVFYLAHA--RSF-SQSFDPYLKLILSVLGE-NAIALRTKALKCLSMIVEADP-SV--LSRPDVQEAVHGRLND 866 (1692)
T ss_pred chhHHHHHHHHHhh--hHH-HHhhHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHhcCh-Hh--hcCHHHHHHHHHhhcc
Confidence 34455444444332 223 35678888888899998 899999999999999988643 32 3456667788888889
Q ss_pred CChhHHHHHHHHHHHHHHhhHhhhHhhHhhhhHHHHHHHhhccCccccchhhHHHHHHHHHHHhhC
Q 001487 515 GKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVG 580 (1069)
Q Consensus 515 ~~~~v~~~al~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~ 580 (1069)
....||++|++.+|..+-..++....||+.+...+.. ..-.+|.+++..+..++...+
T Consensus 867 ssasVREAaldLvGrfvl~~~e~~~qyY~~i~erIlD--------tgvsVRKRvIKIlrdic~e~p 924 (1692)
T KOG1020|consen 867 SSASVREAALDLVGRFVLSIPELIFQYYDQIIERILD--------TGVSVRKRVIKILRDICEETP 924 (1692)
T ss_pred chhHHHHHHHHHHhhhhhccHHHHHHHHHHHHhhcCC--------CchhHHHHHHHHHHHHHHhCC
Confidence 9999999999999999988888777788777665432 234589999999888876554
No 67
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.79 E-value=0.00068 Score=75.54 Aligned_cols=455 Identities=15% Similarity=0.177 Sum_probs=244.3
Q ss_pred hHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhh-----cCC-hhHHHHHHHHHHHHHHhhHh--hhHhhH-hhhh
Q 001487 476 RVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQ-----NGK-QMVQEGALTALASVADSSQE--HFQKYY-DAVM 546 (1069)
Q Consensus 476 ~v~~~a~~al~~l~~~~~~~~~~~~l~~i~~~l~~~l~-----~~~-~~v~~~al~~l~~l~~~~~~--~~~~~~-~~i~ 546 (1069)
.+|-.|-.....+.+..+ +.+.|++-..+..-..+.. +-+ .-.+.+++.++|..+....+ +|..++ +.++
T Consensus 412 ~lRPCaE~L~~~lF~~ys-qllvP~~l~~i~~a~~~~~pt~~~~l~a~L~KDAiYaa~g~~a~~l~~~~dF~~Wl~~~ll 490 (978)
T KOG1993|consen 412 NLRPCAEKLYKDLFDAYS-QLLVPPVLDMIYSAQELQSPTVTEDLTALLLKDAIYAAFGLAAYELSNILDFDKWLQEALL 490 (978)
T ss_pred ccchhHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhC
Confidence 344444444444555544 3344555444443333331 111 23456677777777776654 455655 4456
Q ss_pred HHHHHHHhhccCccccchhhHHHHHHHHHHHhhChhhhhhhHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHHHh--
Q 001487 547 PFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCL-- 624 (1069)
Q Consensus 547 ~~l~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~-- 624 (1069)
|-+. + ..++.+.+|.+.+-.+|.....--+....|. +...++++..+. +|-+++-.+..++..+..-.
T Consensus 491 pEl~----~-~~~~~RiiRRRVa~ilg~Wvsvq~~~e~k~l---~Y~a~lnLL~d~--~D~vV~Ltt~~tlkl~vDD~nF 560 (978)
T KOG1993|consen 491 PELA----N-DHGNSRIIRRRVAWILGQWVSVQQKLELKPL---LYCAFLNLLQDQ--NDLVVRLTTARTLKLVVDDWNF 560 (978)
T ss_pred HHhh----h-cccchhHHHHHHHHHHhhhhheechHhHHHH---HHHHHHHhcCcc--ccceeehHHHHHHHHhhhhccC
Confidence 6554 1 3345677888887777777653323333333 334445533321 12346666666776666543
Q ss_pred -cCCcccchhhhhHHHHHhcccCCCccccCCCCccccccCCCcccchhhcCCceeeeccchHHHHHHHHHHHHHHHHHhh
Q 001487 625 -GQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELK 703 (1069)
Q Consensus 625 -~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~a~~~l~~l~~~~~ 703 (1069)
.+.|.||++.+...+++.+..-. + .+.|..-+.+++.+....+
T Consensus 561 ~~dsFlp~lenlf~~lfkll~~~~-------------------e-----------------~Dtk~~VL~~ls~lI~r~~ 604 (978)
T KOG1993|consen 561 SEDSFLPYLENLFVLLFKLLKAVE-------------------E-----------------CDTKTSVLNLLSTLIERVS 604 (978)
T ss_pred ChhhhhhhHHHHHHHHHHHHHHHh-------------------h-----------------hhhHHHHHHHHHHHHHHHH
Confidence 45699999999999888884310 0 1236677888999999999
Q ss_pred hcccccHHHHHHHHhhccCCcC-ChHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHccC-Cc
Q 001487 704 EGFFPWIDQVAPTLVPLLKFYF-HEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKE-PD 781 (1069)
Q Consensus 704 ~~~~p~~~~~~~~l~~~l~~~~-~~~ir~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~-~~ 781 (1069)
..+.||..+++..+-.+-.... ++-+|.+...+|.+++...+ ..+. .....+.|.+--...-. ++
T Consensus 605 e~I~P~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg----------~qS~---~~~~fL~pVIel~~D~~sP~ 671 (978)
T KOG1993|consen 605 EHIAPYASTIVQYLPLLWEESEEEPLLRCALLATLRNLVNALG----------AQSF---EFYPFLYPVIELSTDPSSPE 671 (978)
T ss_pred HhhhHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhc----------cCCc---cchHHHHHHHHHhcCCCCCc
Confidence 9999998888777665554332 44578888888888887652 1221 22223333222221111 11
Q ss_pred -HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCCCChHhhhHhhhhhhhHHHHHHHH
Q 001487 782 -TEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVFDQV 860 (1069)
Q Consensus 782 -~~v~~~~l~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~~~~~~~~~~~ 860 (1069)
.-.....+.-...++... +.++|+. -.+++.+...+..+.+ ....+
T Consensus 672 hv~L~EDgmeLW~~~L~n~-~~l~p~l-l~L~p~l~~~iE~ste-------------------------------~L~t~ 718 (978)
T KOG1993|consen 672 HVYLLEDGMELWLTTLMNS-QKLTPEL-LLLFPHLLYIIEQSTE-------------------------------NLPTV 718 (978)
T ss_pred eeehhhhHHHHHHHHHhcc-cccCHHH-HHHHHHHHHHHHhhhh-------------------------------hHHHH
Confidence 112233444444455544 3455543 3455555555543221 22334
Q ss_pred HHHHHHHHHHhhhchh-hhHHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHHhHhhhhhhh-hhHhHHHHHHhhc--cCCC
Q 001487 861 GEILGTLIKTFKAAFL-PFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALK-YYETYLPFLLEAC--NDEN 936 (1069)
Q Consensus 861 ~~~l~~l~~~~~~~~~-~~~~~l~~~l~~~l~~~~~~~~r~~a~~~l~~l~~~~~~~~~~-~~~~l~~~ll~~l--~~~~ 936 (1069)
..++.+.+-..++.|. .|...+...+...+. +-..+.-+..+.++.-+++.-+ ...+ +...++|.+...+ +++.
T Consensus 719 l~Ii~sYilLd~~~fl~~y~~~i~k~~~~~l~-dvr~egl~avLkiveili~t~~-il~~~~~~~~L~~lf~~I~~~~~y 796 (978)
T KOG1993|consen 719 LMIISSYILLDNTVFLNDYAFGIFKKLNDLLD-DVRNEGLQAVLKIVEILIKTNP-ILGSLLFSPLLSRLFLSIAENDKY 796 (978)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHhhhH-HHHhhhcchhhHHHHHHHHhCCCC
Confidence 5555555544444443 344445555544442 1122223333444444444433 2222 5566666665543 3455
Q ss_pred hhHHHhhhHHHHHHHhhcCCCchHHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHHHHHhhcCCC-CCHhhHHHHHH
Q 001487 937 QDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQFHRDS-IDAAQVVPAWL 1015 (1069)
Q Consensus 937 ~~vr~~a~~~lg~l~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~-~~~~~~~~~~l 1015 (1069)
|.+...-.-.+|++....++.+ -++++..++. .-+..++..|.
T Consensus 797 P~~~~~yl~vvaRi~l~n~~~~------------------------------------msvlqt~~~~d~~~~~li~~WI 840 (978)
T KOG1993|consen 797 PYVMGEYLLVVARISLRNPSLF------------------------------------MSVLQTKNTYDILIAMLIGNWI 840 (978)
T ss_pred chhHHHHHHHHHHHHhcChHHH------------------------------------HHHHHhhhhHHHHHHHHHHHHH
Confidence 5554333333333333333211 1111111110 01456677888
Q ss_pred hhCCCCCcHHHHHHHHHHHHHHHhhcCCcccCcCcCChhHHHHHHHHHhh
Q 001487 1016 NCLPIKGDLIEAKIVHEQLCSMVERSDSDLLGPNHQYLPKIVSVFAEVSS 1065 (1069)
Q Consensus 1016 ~~lp~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 1065 (1069)
...|...+.+.++--..++.++...+++.++.. ++.|.+..-++|+
T Consensus 841 ~~~~~I~~~k~rKl~~LalsSll~t~~~~ila~----~~~I~nl~~e~L~ 886 (978)
T KOG1993|consen 841 LLFDHINHPKDRKLNTLALSSLLRTNNPDILAV----LDSIMNLWFEVLS 886 (978)
T ss_pred HHcccCCCHHHhhHHHHHHHHHhccCCcHHHHH----HhHHHHHHHHHHH
Confidence 888877677766666777888888888888888 8999888777765
No 68
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.77 E-value=0.00082 Score=80.41 Aligned_cols=142 Identities=11% Similarity=0.167 Sum_probs=101.1
Q ss_pred HHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCCChhHHHHHHHHHHHhhhhhhhhcchhHH
Q 001487 104 LKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLK 183 (1069)
Q Consensus 104 i~~~ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~ 183 (1069)
+...++..+. |+...+|..+..|++.|+..+-.--.-|++-..+..-+.++...+|++|++.+|..+-..++ .+.
T Consensus 817 yLk~Il~~l~-e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e----~~~ 891 (1692)
T KOG1020|consen 817 YLKLILSVLG-ENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPE----LIF 891 (1692)
T ss_pred HHHHHHHHhc-CchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHH----HHH
Confidence 3345566666 68889999999999999986432224567777777777888889999999999988877655 456
Q ss_pred HHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhCCcchHhHHHhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHH
Q 001487 184 HLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIEL 258 (1069)
Q Consensus 184 ~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~l~~l 258 (1069)
+.+..+.+...|+ +..||+.+++.+..+....++ |.. ++.+.-.+....+++...+..-+++.|..+
T Consensus 892 qyY~~i~erIlDt-gvsVRKRvIKIlrdic~e~pd------f~~-i~~~cakmlrRv~DEEg~I~kLv~etf~kl 958 (1692)
T KOG1020|consen 892 QYYDQIIERILDT-GVSVRKRVIKILRDICEETPD------FSK-IVDMCAKMLRRVNDEEGNIKKLVRETFLKL 958 (1692)
T ss_pred HHHHHHHhhcCCC-chhHHHHHHHHHHHHHHhCCC------hhh-HHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence 6666777777887 899999999999999887542 222 233333334344454444777777777654
No 69
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.71 E-value=0.00037 Score=77.87 Aligned_cols=196 Identities=14% Similarity=0.158 Sum_probs=116.2
Q ss_pred CHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCCChhHHHHHHHHHHHhhhhhhh
Q 001487 97 SLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGD 176 (1069)
Q Consensus 97 ~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~ 176 (1069)
++|-...+-..+-+.+.. +++.+|+.++.|..++.+.. | +...-+++...+.+.+.+..+-.+++..+..+|+..++
T Consensus 136 s~EmardlapeVe~Ll~~-~~~~irKKA~Lca~r~irK~-P-~l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~ 212 (866)
T KOG1062|consen 136 SPEMARDLAPEVERLLQH-RDPYIRKKAALCAVRFIRKV-P-DLVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPD 212 (866)
T ss_pred CHHHhHHhhHHHHHHHhC-CCHHHHHHHHHHHHHHHHcC-c-hHHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHH
Confidence 566555566666666776 79999999999999998862 3 34455666666777777878888888888889887544
Q ss_pred h---cchhHHHHHHHHHHhhcCC----------CChHHHHHHHHHHHHHHHhhCCcchHhHHHhhHHHHHH---------
Q 001487 177 T---LTPHLKHLHAVFLNCLTNS----------NNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMR--------- 234 (1069)
Q Consensus 177 ~---~~~~~~~l~~~l~~~l~~~----------~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~--------- 234 (1069)
. ++...+.++..+.+..... .+|-++...++.|+-+-..-. ...+.+.+++..+..
T Consensus 213 ~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~--daSd~M~DiLaqvatntdsskN~G 290 (866)
T KOG1062|consen 213 ALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDA--DASDLMNDILAQVATNTDSSKNAG 290 (866)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCc--cHHHHHHHHHHHHHhcccccccch
Confidence 3 3334444444444433221 256677777777765554321 112222222222111
Q ss_pred --HHHHHHh-----CCChHHHHHHHHHHHHHHcc-------------------ccHHHHHhHHHHHHHHHHHhcCCCcch
Q 001487 235 --TLTESLN-----NGNEATAQEALELLIELAGT-------------------EPRFLRRQLVDVVGSMLQIAEAESLEE 288 (1069)
Q Consensus 235 --~l~~~l~-----~~~~~~~~~~~~~l~~l~~~-------------------~~~~~~~~~~~l~~~l~~~~~~~~~~~ 288 (1069)
.|.++.. ..+...|..++.+|+.++.+ .+.....|-..|++ ++. +.|.
T Consensus 291 nAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIle----CL~--DpD~ 364 (866)
T KOG1062|consen 291 NAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILE----CLK--DPDV 364 (866)
T ss_pred hHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHH----Hhc--CCcH
Confidence 0111110 23445666666666665543 33444445444444 443 4678
Q ss_pred HHHHHHHHHHHHHHH
Q 001487 289 GTRHLAIEFVITLAE 303 (1069)
Q Consensus 289 ~~r~~a~~~l~~l~~ 303 (1069)
.+|..|+++...+..
T Consensus 365 SIkrralELs~~lvn 379 (866)
T KOG1062|consen 365 SIKRRALELSYALVN 379 (866)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999998887
No 70
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.70 E-value=6.4e-05 Score=83.89 Aligned_cols=471 Identities=16% Similarity=0.170 Sum_probs=270.9
Q ss_pred HHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc--CCCHHHHHHHHHHHHhhcccCCCCcccCCCHHHHHHH
Q 001487 27 LISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR--SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSL 104 (1069)
Q Consensus 27 ll~~~~s~d~~~r~~A~~~L~~~~~~~p~~~~~~L~~il~~--~~~~~~R~~a~i~L~~~i~~~~~~~w~~l~~~~~~~i 104 (1069)
++.+....|=+..+....+|..+.+.+|+..+...--++.+ +.++.+|.+|...+...=- +...+.+
T Consensus 54 vvk~~~T~dlelKKlvyLYl~nYa~~~P~~a~~avnt~~kD~~d~np~iR~lAlrtm~~l~v-----------~~i~ey~ 122 (734)
T KOG1061|consen 54 VVKCMQTRDLELKKLVYLYLMNYAKGKPDLAILAVNTFLKDCEDPNPLIRALALRTMGCLRV-----------DKITEYL 122 (734)
T ss_pred HHhhcccCCchHHHHHHHHHHHhhccCchHHHhhhhhhhccCCCCCHHHHHHHhhceeeEee-----------hHHHHHH
Confidence 45556667778888999999888877887654444444444 7789999999877644321 3356677
Q ss_pred HHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCCChhHHHHHHHHHHHhhhhhhh-hcchhHH
Q 001487 105 KSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGD-TLTPHLK 183 (1069)
Q Consensus 105 ~~~ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~-~~~~~~~ 183 (1069)
...+...+.+ .++.+|+.++.+++.+.........-..+++.+..++.++++.+...|+.+|..|.+.-++ .......
T Consensus 123 ~~Pl~~~l~d-~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~ 201 (734)
T KOG1061|consen 123 CDPLLKCLKD-DDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNP 201 (734)
T ss_pred HHHHHHhccC-CChhHHHHHHHHHHHhhcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccH
Confidence 7788888887 5899999999999988765333224467889999999999999999999999999887653 2222344
Q ss_pred HHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhCCcchHhHHHhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHcccc
Q 001487 184 HLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEP 263 (1069)
Q Consensus 184 ~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~ 263 (1069)
+++..++..+..- ..--+...+.+ +..+.++.. .+. ..+++.+...++..++.+...+...+..++....
T Consensus 202 ~~~~~lL~al~ec-~EW~qi~IL~~---l~~y~p~d~-~ea-----~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~ 271 (734)
T KOG1061|consen 202 QLINKLLEALNEC-TEWGQIFILDC---LAEYVPKDS-REA-----EDICERLTPRLQHANSAVVLSAVKVILQLVKYLK 271 (734)
T ss_pred HHHHHHHHHHHHh-hhhhHHHHHHH---HHhcCCCCc-hhH-----HHHHHHhhhhhccCCcceEeehHHHHHHHHHHHH
Confidence 4555555555543 33334444444 444443221 111 1455555555666666666666777766655433
Q ss_pred HHHHHhHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCC
Q 001487 264 RFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAE 343 (1069)
Q Consensus 264 ~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~ 343 (1069)
..-...+..+-+.+...+. ...++...++.-+.-+.. +.|... ..-+... +..+. |+-+
T Consensus 272 ~~~~~~~~K~~~pl~tlls---~~~e~qyvaLrNi~lil~---~~p~~~-------~~~~~~F--f~kyn--DPiY---- 330 (734)
T KOG1061|consen 272 QVNELLFKKVAPPLVTLLS---SESEIQYVALRNINLILQ---KRPEIL-------KVEIKVF--FCKYN--DPIY---- 330 (734)
T ss_pred HHHHHHHHHhcccceeeec---ccchhhHHHHhhHHHHHH---hChHHH-------HhHhHee--eeecC--Cchh----
Confidence 3222223333333333332 122444444443333333 122211 1000000 00111 1000
Q ss_pred CCCccccCCcchhhHHHHHHHHHHHcCCccchHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHH
Q 001487 344 TEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMV 423 (1069)
Q Consensus 344 ~e~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~i~~~l 423 (1069)
....-.+++..++. +..++.++.-+.++....+...-..++.++|.++....+. ...++.+
T Consensus 331 ----------vK~eKleil~~la~----~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~-----~~cv~~l 391 (734)
T KOG1061|consen 331 ----------VKLEKLEILIELAN----DANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS-----NDCVSIL 391 (734)
T ss_pred ----------hHHHHHHHHHHHhh----HhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh-----hhhHHHH
Confidence 00112334444442 3455567777777777777777778899999887654432 5577777
Q ss_pred HhhCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHH
Q 001487 424 LNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDG 503 (1069)
Q Consensus 424 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~ 503 (1069)
+..++-...-|...+...+..+....+. ..+.+++.+...+..-.+|+.|.+..|.++...+..+ -.+.
T Consensus 392 Lell~~~~~yvvqE~~vvi~dilRkyP~-----~~~~vv~~l~~~~~sl~epeak~amiWilg~y~~~i~------~a~e 460 (734)
T KOG1061|consen 392 LELLETKVDYVVQEAIVVIRDILRKYPN-----KYESVVAILCENLDSLQEPEAKAALIWILGEYAERIE------NALE 460 (734)
T ss_pred HHHHhhcccceeeehhHHHHhhhhcCCC-----chhhhhhhhcccccccCChHHHHHHHHHHhhhhhccC------cHHH
Confidence 7777655444555556666666655543 2366777777777665678888999999988877664 3345
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHHHHHHHhhHhhhHhhHhhhhHHHHHHHhhccCccccchhhHHHHHHHHHH
Q 001487 504 IVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVG 576 (1069)
Q Consensus 504 i~~~l~~~l~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~l~ 576 (1069)
++..+++.+.+....|+...+.+.-.+.-..+..-...+..+++. ... +.+...+|.+++.-...+.
T Consensus 461 lL~~f~en~~dE~~~Vql~LLta~ik~Fl~~p~~tq~~l~~vL~~---~~~---d~~~~dlrDr~l~Y~RlLs 527 (734)
T KOG1061|consen 461 LLESFLENFKDETAEVQLELLTAAIKLFLKKPTETQELLQGVLPL---ATA---DTDNPDLRDRGLIYWRLLS 527 (734)
T ss_pred HHHHHHhhcccchHHHHHHHHHHHHHHHhcCCccHHHHHHHHHhh---hhc---cccChhhhhhHHHHHHHhh
Confidence 566666666666666665444443333322222212222222221 111 2223457888776665554
No 71
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=98.70 E-value=0.0014 Score=76.90 Aligned_cols=143 Identities=17% Similarity=0.151 Sum_probs=107.5
Q ss_pred CCCHHHHHHHHHHHHhhcccCCCCcccCCCHHHHHHHHHHHHHHH-----hh----cchhhHHHHHHHHHHHHHhcccCC
Q 001487 68 SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSI-----QL----ESAKSISKKLCDTVSELASNILPE 138 (1069)
Q Consensus 68 ~~~~~~R~~a~i~L~~~i~~~~~~~w~~l~~~~~~~i~~~ll~~l-----~~----e~~~~vr~~~~~~i~~i~~~~~~~ 138 (1069)
++..++|+-+++.++...+.+ ...++.+..+.+.-.++.-+ .+ +-...+|...+++++.+.++..+
T Consensus 88 ~~~we~rhg~~i~lrei~~~h----~~~~~~~~led~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L~~~l~~~~~- 162 (1549)
T KOG0392|consen 88 EPQWEIRHGAAIALREILKTH----GDSLSYELLEDLLIRLLCVLALDRFGDFISDNVVAPVREACAQALGAYLKHMDE- 162 (1549)
T ss_pred CchhhhhcCcchhhhhHHHHh----cchhhHHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHHhhhh-
Confidence 677899999999999999987 44455444443333333322 22 12346999999999999998665
Q ss_pred CCchhhHHHHHHhhcCCChhHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhh
Q 001487 139 NGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCL 216 (1069)
Q Consensus 139 ~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~ 216 (1069)
....+.+..+.+++..++++.|++++..+........+.+....+.+++.+..++.+. +..||..|...+..+....
T Consensus 163 s~~~~~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l~~~~~~vl~~~i~~L~ds-~ddv~~~aa~~l~~~~s~~ 239 (1549)
T KOG0392|consen 163 SLIKETLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLLFQLLNLVLDFVIEGLEDS-DDDVRSVAAQFLVPAPSIQ 239 (1549)
T ss_pred HhhHHHHHHHHHHHcCcchhheechHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc-chHHHHHHHHHhhhhhHHH
Confidence 5667788888899988999999999999886665433333456778888999999998 8899999999888777654
No 72
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=98.70 E-value=0.00018 Score=76.63 Aligned_cols=293 Identities=16% Similarity=0.130 Sum_probs=175.8
Q ss_pred hHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhCCcchHhHHHhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHc
Q 001487 181 HLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAG 260 (1069)
Q Consensus 181 ~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~ 260 (1069)
...++.|.+..-+.+. ...|...+.+++..+....- -.+++...++.|..++.+.....|-.|++.+..++.
T Consensus 261 ~~~q~rpfL~~wls~k-~emV~lE~Ar~v~~~~~~nv-------~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam 332 (898)
T COG5240 261 ALLQLRPFLNSWLSDK-FEMVFLEAARAVCALSEENV-------GSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAM 332 (898)
T ss_pred HHHHHHHHHHHHhcCc-chhhhHHHHHHHHHHHHhcc-------CHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHh
Confidence 3455666666667775 67888888888887765421 124455778888888888888899999999999999
Q ss_pred cccHHHHHhHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccc
Q 001487 261 TEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWH 340 (1069)
Q Consensus 261 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~ 340 (1069)
.+|..+..--.++ +-++ .+.+..+...|+..+ .+. + ...-+..++..+...+.+..|+
T Consensus 333 ~~P~kv~vcN~ev-EsLI-----sd~Nr~IstyAITtL---LKT---G------t~e~idrLv~~I~sfvhD~SD~---- 390 (898)
T COG5240 333 KYPQKVSVCNKEV-ESLI-----SDENRTISTYAITTL---LKT---G------TEETIDRLVNLIPSFVHDMSDG---- 390 (898)
T ss_pred hCCceeeecChhH-HHHh-----hcccccchHHHHHHH---HHc---C------chhhHHHHHHHHHHHHHhhccC----
Confidence 8886543211111 1111 123455555665544 341 1 1233444444444444433321
Q ss_pred cCCCCCccccCCcchhhHHHHHHHHHHHcCCccchHHHHHHHHHhhc-CCChHHHHHHHHHHHHHHhhcHHHHHHhHHHH
Q 001487 341 SAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLA-APEWQKHHAALIALAQIAEGCAKVMVKNLEQV 419 (1069)
Q Consensus 341 ~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~i 419 (1069)
-...+.+++..++..++.+ . ..++.++...+. ....+-+.++..++..+.+..++.-...+..+
T Consensus 391 -------------FKiI~ida~rsLsl~Fp~k-~-~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEraLe~L 455 (898)
T COG5240 391 -------------FKIIAIDALRSLSLLFPSK-K-LSYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKERALEVL 455 (898)
T ss_pred -------------ceEEeHHHHHHHHhhCcHH-H-HHHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHHHHHHH
Confidence 2345777888888888632 2 234555555443 34577788888888888877665444444444
Q ss_pred HHHHHhhCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccC
Q 001487 420 LSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTP 499 (1069)
Q Consensus 420 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~ 499 (1069)
+.+ +.|.. --+.+...|+-+.+..+.. +.-..++..+.+.+-- .+..||.+|..+|..|.-+.... -
T Consensus 456 C~f----IEDce--y~~I~vrIL~iLG~EgP~a---~~P~~yvrhIyNR~iL-EN~ivRsaAv~aLskf~ln~~d~---~ 522 (898)
T COG5240 456 CTF----IEDCE--YHQITVRILGILGREGPRA---KTPGKYVRHIYNRLIL-ENNIVRSAAVQALSKFALNISDV---V 522 (898)
T ss_pred HHH----Hhhcc--hhHHHHHHHHHhcccCCCC---CCcchHHHHHHHHHHH-hhhHHHHHHHHHHHHhccCcccc---c
Confidence 443 33332 2233455555555544321 1112233344444433 57789999999999998766532 1
Q ss_pred chHHHHHHHHHHhhcCChhHHHHHHHHHHHHH
Q 001487 500 YLDGIVSKLLVLLQNGKQMVQEGALTALASVA 531 (1069)
Q Consensus 500 ~l~~i~~~l~~~l~~~~~~v~~~al~~l~~l~ 531 (1069)
..+.+...+..++++.+.++|..|--++..+-
T Consensus 523 ~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 523 SPQSVENALKRCLNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred cHHHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence 23455667777999999999999877766554
No 73
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.68 E-value=5.5e-07 Score=92.07 Aligned_cols=188 Identities=18% Similarity=0.218 Sum_probs=125.0
Q ss_pred CCcchhhHHHHHHHHHHHcCCccchHHHH-------HHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHH
Q 001487 351 ESSNYSVGQECLDRLAIALGGNTIVPVAS-------EQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMV 423 (1069)
Q Consensus 351 ~~~~~~~a~~~l~~l~~~~~~~~~~~~l~-------~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~i~~~l 423 (1069)
+|..+..+...|..+.....+....+.+. ..+...++|....+-..|+.+++.++...+..+.++.+.++|.+
T Consensus 20 ~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~L 99 (228)
T PF12348_consen 20 DWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLPPL 99 (228)
T ss_dssp SHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 34444455556666555441123333333 34445566667778888999999999998888889999999999
Q ss_pred HhhCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhh-HHHHHhhccCCCChhHHHHHHHHHHHhhhcCC--cccccC-
Q 001487 424 LNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQV-LPALAGAMDDFQNPRVQAHAASAVLNFSENCT--PEILTP- 499 (1069)
Q Consensus 424 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~i-l~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~--~~~~~~- 499 (1069)
+..+.+.+..+|.+|..+|..+++.++ +.+.+ ++.+.....+ +++.+|..++..+..++...+ ...+..
T Consensus 100 l~~~~~~~~~i~~~a~~~L~~i~~~~~------~~~~~~~~~l~~~~~~-Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~ 172 (228)
T PF12348_consen 100 LKKLGDSKKFIREAANNALDAIIESCS------YSPKILLEILSQGLKS-KNPQVREECAEWLAIILEKWGSDSSVLQKS 172 (228)
T ss_dssp HHGGG---HHHHHHHHHHHHHHHTTS-------H--HHHHHHHHHHTT--S-HHHHHHHHHHHHHHHTT-----GGG--H
T ss_pred HHHHccccHHHHHHHHHHHHHHHHHCC------cHHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHHccchHhhhccc
Confidence 999999999999999999999998764 22344 7777778888 999999999999999998877 233333
Q ss_pred -chHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhHhhhHhhHhhh
Q 001487 500 -YLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAV 545 (1069)
Q Consensus 500 -~l~~i~~~l~~~l~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~i 545 (1069)
.++.+.+.+.+++.+++++||+.+-.++..+....|+.-...+..+
T Consensus 173 ~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a~~~~~~l 219 (228)
T PF12348_consen 173 AFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERAESILSML 219 (228)
T ss_dssp HHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH-------
T ss_pred chHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhhccchhcc
Confidence 3588999999999999999999999999999988887644444333
No 74
>KOG2020 consensus Nuclear transport receptor CRM1/MSN5 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.66 E-value=0.0031 Score=75.56 Aligned_cols=225 Identities=22% Similarity=0.333 Sum_probs=159.5
Q ss_pred HHHHHHHHhcC--CChHHHHHHHHHHHHhhhcCchHHHHHHHHHHccCCCHHHHHHHHHHHHhhcccCCCCcccCCCHHH
Q 001487 23 PFETLISHLMS--TSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHT 100 (1069)
Q Consensus 23 ~l~~ll~~~~s--~d~~~r~~A~~~L~~~~~~~p~~~~~~L~~il~~~~~~~~R~~a~i~L~~~i~~~~~~~w~~l~~~~ 100 (1069)
++...+....+ ++++.|.+|.+.|.+++. .|+.+ .....++..+.++.+|++|..+|.+.++.+ |..++.+.
T Consensus 11 ~lldavv~~~~~~~s~~~r~eA~~~l~~lke-~~~~~-~~~~~iL~~s~~~~~k~f~Lqlle~vik~~----W~~~~~~~ 84 (1041)
T KOG2020|consen 11 ELLDAVVVTLNPEGSNEERGEAQQILEELKE-EPDSW-LQVYLILKLSTNPILKYFALQLLENVIKFR----WNSLPVEE 84 (1041)
T ss_pred HHHHhHHHHhCcccchHHHHHHHHHHHHHHh-CcchH-HHHHHHHhccCCchhheeeHHHHHHHHHHh----cccCCccc
Confidence 33344444444 478899999999999999 78875 556677777889999999999999999998 99999999
Q ss_pred HHHHHHHHHHHHhhc--------chhhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCCChhHHHHHHHHHHHhhh
Q 001487 101 QSSLKSMLLQSIQLE--------SAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQ 172 (1069)
Q Consensus 101 ~~~i~~~ll~~l~~e--------~~~~vr~~~~~~i~~i~~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~ 172 (1069)
+..+|..++...... +...++..++.++-.|++.++| ..||+++|.+.+.... +...++.++.++..+.+
T Consensus 85 r~glk~~v~~~~~~~~~~~~~~~~~~~~~~kL~~i~Vqi~K~eWp-~~wp~~i~dl~~~s~~-s~~~~el~m~Il~lLsE 162 (1041)
T KOG2020|consen 85 RVGLKNYVLTLIIEASPDEDVSETEKHLLNKLNLILVQIVKREWP-AIWPTFIPDLAQSSKT-SETVCELSMIILLLLSE 162 (1041)
T ss_pred cHHHHHHHHHHHhhcCCcHhHHHHHHHHHHHHhHHHHHHHHHHHH-hhcchhhhhHHHHhhc-CcccchHHHHHHHHHHH
Confidence 999999888876531 2456788999999999999999 8999999999998874 34577888888888887
Q ss_pred hhhhh----c------------chhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhCCcchHhHHHhhHHHHHHHH
Q 001487 173 YIGDT----L------------TPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTL 236 (1069)
Q Consensus 173 ~~~~~----~------------~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l 236 (1069)
.+-.- + ...+..+...+....... +..+-.+++..+..+..+++- ...+... .++.+
T Consensus 163 dvf~~ss~~~~q~~~~il~~~~~~~f~~i~~l~~~~~~~a-~~~~~~atl~tl~~fl~wip~---~~I~~tn---~l~~~ 235 (1041)
T KOG2020|consen 163 EVFDFSSSELTQQKIIILKNLLENEFQQIFTLCSYIKEKA-NSELLSATLETLLRFLEWIPL---GYIFETN---ILELL 235 (1041)
T ss_pred HHhcccchHHHhhhHHHHHHHhhHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHhhcccH---HHHHHhh---hHHHH
Confidence 64211 0 011222333333333333 333777788888888887741 1222221 12222
Q ss_pred HHHHhCCChHHHHHHHHHHHHHHcccc
Q 001487 237 TESLNNGNEATAQEALELLIELAGTEP 263 (1069)
Q Consensus 237 ~~~l~~~~~~~~~~~~~~l~~l~~~~~ 263 (1069)
..... ..+..|..+++|+.+++....
T Consensus 236 l~~~l-n~~~~r~~al~CL~ei~s~~~ 261 (1041)
T KOG2020|consen 236 LNKFL-NAPELRNNALSCLTELLSRKR 261 (1041)
T ss_pred HHhcc-chHHHHHHHHHHHHHHHhccc
Confidence 22222 267889999999999887653
No 75
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=98.65 E-value=0.00017 Score=80.58 Aligned_cols=393 Identities=17% Similarity=0.172 Sum_probs=227.6
Q ss_pred HHHHhhCCCCCh---hHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcc--
Q 001487 421 SMVLNSFRDPHP---RVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPE-- 495 (1069)
Q Consensus 421 ~~l~~~l~d~~~---~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~-- 495 (1069)
|.++..|.|.++ .-...++.+++.++.. +.+.......++..+....+...+......++.++..+.+.....
T Consensus 2 p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~--~~i~~~~~~~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~~ 79 (415)
T PF12460_consen 2 PALLALLPDSDSSTDSNYERILEALAALSTS--PQILETLSIRLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDKQ 79 (415)
T ss_pred chHHhhCCCCCCcchhHHHHHHHHHHHHHCC--hhHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhcccccc
Confidence 556667776655 4455677777777753 222122333444444433433234555567777777777654322
Q ss_pred --cccCchHH-HHHHHHHHhhcC-----C--hhHHHHHHHHHHHHHHhhHhhh-HhhHhhhhHHHHHH--Hhhc--cCcc
Q 001487 496 --ILTPYLDG-IVSKLLVLLQNG-----K--QMVQEGALTALASVADSSQEHF-QKYYDAVMPFLKAI--LVNA--TDKS 560 (1069)
Q Consensus 496 --~~~~~l~~-i~~~l~~~l~~~-----~--~~v~~~al~~l~~l~~~~~~~~-~~~~~~i~~~l~~~--l~~~--~~~~ 560 (1069)
....|++. +++.++...... + ..+-+.+...++.+++..+..- ...++.+...+... .... ....
T Consensus 80 ~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~~~~~~~lf~~~~~~~~~~~~~~~ 159 (415)
T PF12460_consen 80 FEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEILDELYSLFLSPKSFSPFQPSSST 159 (415)
T ss_pred cchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccccccCCCCccccc
Confidence 22345554 777777765332 1 2333334444444444443321 12333333333200 0000 0000
Q ss_pred ccchhhHHHHHHHHHHHhhChhhhhhhHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHHHhcCCcccchhhhhHHHH
Q 001487 561 NRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLL 640 (1069)
Q Consensus 561 ~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll 640 (1069)
...-..+.+-.+..+..++.++.-.|...++++.++.+.... .+...+..+..+++.+++.+.++ ..+..++..+.
T Consensus 160 ~~~~~~~~~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~--~~~~~~~~~~~~la~LvNK~~~~--~~l~~~l~~~~ 235 (415)
T PF12460_consen 160 ISEQQSRLVILFSAILCSLRKDVSLPDLEELLQSLLNLALSS--EDEFSRLAALQLLASLVNKWPDD--DDLDEFLDSLL 235 (415)
T ss_pred cccccccHHHHHHHHHHcCCcccCccCHHHHHHHHHHHHHcC--CChHHHHHHHHHHHHHHcCCCCh--hhHHHHHHHHH
Confidence 001122334455566666666655567777777777642211 22557778888888888775332 14444444444
Q ss_pred HhcccCCCccccCCCCccccccCCCcccchhhcCCceeeeccchHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHhhc
Q 001487 641 QSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPL 720 (1069)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~a~~~l~~l~~~~~~~~~p~~~~~~~~l~~~ 720 (1069)
....... . ...+..++..+..+.++.-..-.|...+++..++.+
T Consensus 236 ~~~~~~~-----------------~-------------------~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~l 279 (415)
T PF12460_consen 236 QSISSSE-----------------D-------------------SELRPQALEILIWITKALVMRGHPLATELLDKLLEL 279 (415)
T ss_pred hhhcccC-----------------C-------------------cchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 4431000 0 012445677788888876555678888888889998
Q ss_pred cCCcCChHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHhC
Q 001487 721 LKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISG 800 (1069)
Q Consensus 721 l~~~~~~~ir~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~v~~~~l~~l~~~i~~~~ 800 (1069)
+++ +++...++++++-++........+..+.....=+.++++..++|.+++.+.+..+ ......+.++..+++.+.
T Consensus 280 L~~---~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~-~~k~~yL~ALs~ll~~vP 355 (415)
T PF12460_consen 280 LSS---PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADD-EIKSNYLTALSHLLKNVP 355 (415)
T ss_pred hCC---hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcCh-hhHHHHHHHHHHHHhhCC
Confidence 874 7889999999998876532222221111112235678899999999999876443 356667888888888754
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCCCChHhhhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhchhhhHH
Q 001487 801 PLLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVFDQVGEILGTLIKTFKAAFLPFFD 880 (1069)
Q Consensus 801 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 880 (1069)
.+.+.+-++.+.+++.+.+.. .+.+++.++.+++..+....++.+.+|+.
T Consensus 356 ----~~vl~~~l~~LlPLLlqsL~~--------------------------~~~~v~~s~L~tL~~~l~~~~~~i~~hl~ 405 (415)
T PF12460_consen 356 ----KSVLLPELPTLLPLLLQSLSL--------------------------PDADVLLSSLETLKMILEEAPELISEHLS 405 (415)
T ss_pred ----HHHHHHHHHHHHHHHHHHhCC--------------------------CCHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 566667777788877765521 12357778889999999988888999999
Q ss_pred HHHhhhhhh
Q 001487 881 ELSSYLTPM 889 (1069)
Q Consensus 881 ~l~~~l~~~ 889 (1069)
.++|.+++.
T Consensus 406 sLI~~LL~l 414 (415)
T PF12460_consen 406 SLIPRLLKL 414 (415)
T ss_pred HHHHHHHhc
Confidence 999988653
No 76
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.65 E-value=7.1e-06 Score=82.03 Aligned_cols=391 Identities=15% Similarity=0.161 Sum_probs=229.7
Q ss_pred HHHHHhhcchhhHHHHHHHHHHHHHhcccCCCC---chhhHHHHHHhhcCCChhHHHHHHHHHHHhhhhhhhhcchhHHH
Q 001487 108 LLQSIQLESAKSISKKLCDTVSELASNILPENG---WPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKH 184 (1069)
Q Consensus 108 ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~~~~---w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~ 184 (1069)
++-.+.+ .++.++..++..+|.++-....... .-.+=+.+.++..+ ...+|..+..++..++.......+--...
T Consensus 90 vl~llqs-~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd-~vevqcnaVgCitnLaT~d~nk~kiA~sG 167 (550)
T KOG4224|consen 90 VLALLQS-CDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTD-GVEVQCNAVGCITNLATFDSNKVKIARSG 167 (550)
T ss_pred HHHHHhC-cchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCC-CcEEEeeehhhhhhhhccccchhhhhhcc
Confidence 3444554 6889999999999988764332222 22333456666554 44677778888888876532221111112
Q ss_pred HHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhCCcchHhHHHhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHcc--c
Q 001487 185 LHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGT--E 262 (1069)
Q Consensus 185 l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~~--~ 262 (1069)
-+..+...-++. +..+|..+..+|..+....+ .+..+.. ..-+++|...+.+.+++++..|+..+..++-. .
T Consensus 168 aL~pltrLaksk-dirvqrnatgaLlnmThs~E---nRr~LV~--aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~ 241 (550)
T KOG4224|consen 168 ALEPLTRLAKSK-DIRVQRNATGALLNMTHSRE---NRRVLVH--AGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRA 241 (550)
T ss_pred chhhhHhhcccc-hhhHHHHHHHHHHHhhhhhh---hhhhhhc--cCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHH
Confidence 233344444454 88999999999988876542 1111110 02244556667788999999999998877643 2
Q ss_pred cHHHHHhHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccC
Q 001487 263 PRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSA 342 (1069)
Q Consensus 263 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~ 342 (1069)
.+.+..--+.+++.+...+.+ .+++++.+|--.+..++.-.+|.....+ ..-+|.+++.++.+.-
T Consensus 242 Rk~Laqaep~lv~~Lv~Lmd~--~s~kvkcqA~lALrnlasdt~Yq~eiv~------ag~lP~lv~Llqs~~~------- 306 (550)
T KOG4224|consen 242 RKILAQAEPKLVPALVDLMDD--GSDKVKCQAGLALRNLASDTEYQREIVE------AGSLPLLVELLQSPMG------- 306 (550)
T ss_pred HHHHHhcccchHHHHHHHHhC--CChHHHHHHHHHHhhhcccchhhhHHHh------cCCchHHHHHHhCcch-------
Confidence 344555455688888887754 4678888887778777764333221111 1235666666543210
Q ss_pred CCCCccccCCcchhhHHHHHHHHHHHcCCcc-chH-HHHHHHHHhhcC-CChHHHHHHHHHHHHHHhhcHHHHHHhHH-H
Q 001487 343 ETEDEDAGESSNYSVGQECLDRLAIALGGNT-IVP-VASEQLPAYLAA-PEWQKHHAALIALAQIAEGCAKVMVKNLE-Q 418 (1069)
Q Consensus 343 ~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~~-~~~-~l~~~l~~~l~~-~~~~~r~aal~~l~~l~~~~~~~~~~~~~-~ 418 (1069)
...-....|+..++.+-+.+. +.. -++.-+...+.- .+.+.+..|...|..++............ .
T Consensus 307 ----------plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esg 376 (550)
T KOG4224|consen 307 ----------PLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESG 376 (550)
T ss_pred ----------hHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcC
Confidence 001123345555543322111 111 122223344443 45567888888888887644332222222 3
Q ss_pred HHHHHHhhCCCCChhHHHHHHHHHHHhHhhhchhHHhhh-hhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCc---
Q 001487 419 VLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQF-HPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTP--- 494 (1069)
Q Consensus 419 i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~--- 494 (1069)
-+|.+...+.|....+|....-|+.+++-. ......+ -..++|.|+....+ .+.+||..+..+|.++++....
T Consensus 377 Ai~kl~eL~lD~pvsvqseisac~a~Lal~--d~~k~~lld~gi~~iLIp~t~s-~s~Ev~gNaAaAL~Nlss~v~~Yar 453 (550)
T KOG4224|consen 377 AIPKLIELLLDGPVSVQSEISACIAQLALN--DNDKEALLDSGIIPILIPWTGS-ESEEVRGNAAAALINLSSDVEHYAR 453 (550)
T ss_pred chHHHHHHHhcCChhHHHHHHHHHHHHHhc--cccHHHHhhcCCcceeecccCc-cchhhcccHHHHHHhhhhhhHHHHH
Confidence 567888888999888988877777777632 2221122 23688888888888 8899999999999999876431
Q ss_pred --ccc-cCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhH
Q 001487 495 --EIL-TPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQ 535 (1069)
Q Consensus 495 --~~~-~~~l~~i~~~l~~~l~~~~~~v~~~al~~l~~l~~~~~ 535 (1069)
+.. .|. +.+-..|...+.+....++..+..++..+.....
T Consensus 454 viEawd~P~-~gi~g~L~Rfl~S~~~tf~hia~wTI~qLle~h~ 496 (550)
T KOG4224|consen 454 VIEAWDHPV-QGIQGRLARFLASHELTFRHIARWTIQQLLEDHD 496 (550)
T ss_pred HHHHhcCcc-hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCC
Confidence 000 122 4455556666666666677777777777665543
No 77
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.64 E-value=9.5e-07 Score=88.08 Aligned_cols=360 Identities=16% Similarity=0.169 Sum_probs=216.1
Q ss_pred hhhHHHHHHhhcCCChhHHHHHHHHHHHhhhhhhhh-cchhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhCCcc
Q 001487 142 PELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDT-LTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSA 220 (1069)
Q Consensus 142 ~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~-~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~ 220 (1069)
.+....+.-.+++.++..+..+-..++.++-..+.. +.-.+..+-+.+.+.+.+ ...+|..++.|+.+++..-+...
T Consensus 84 res~epvl~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd--~vevqcnaVgCitnLaT~d~nk~ 161 (550)
T KOG4224|consen 84 RESNEPVLALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTD--GVEVQCNAVGCITNLATFDSNKV 161 (550)
T ss_pred hhhhhHHHHHHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCC--CcEEEeeehhhhhhhhccccchh
Confidence 345666677788899989889999999887765543 222344555566676666 56899999999999987632111
Q ss_pred hHhHHHhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHccccHHHHHhH--HHHHHHHHHHhcCCCcchHHHHHHHHHH
Q 001487 221 DRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQL--VDVVGSMLQIAEAESLEEGTRHLAIEFV 298 (1069)
Q Consensus 221 ~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~--~~l~~~l~~~~~~~~~~~~~r~~a~~~l 298 (1069)
..-.... +..+-.+.++.+..++..+...+..+...+.. +..+ ..-++++...+ +..+..++..+...+
T Consensus 162 kiA~sGa-----L~pltrLakskdirvqrnatgaLlnmThs~En--Rr~LV~aG~lpvLVsll--~s~d~dvqyycttai 232 (550)
T KOG4224|consen 162 KIARSGA-----LEPLTRLAKSKDIRVQRNATGALLNMTHSREN--RRVLVHAGGLPVLVSLL--KSGDLDVQYYCTTAI 232 (550)
T ss_pred hhhhccc-----hhhhHhhcccchhhHHHHHHHHHHHhhhhhhh--hhhhhccCCchhhhhhh--ccCChhHHHHHHHHh
Confidence 1111111 22222334455667777777777665432211 0000 01233444433 223455666666655
Q ss_pred HHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCcchhhHHHHHHHHHHHcCCccchHHH
Q 001487 299 ITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVA 378 (1069)
Q Consensus 299 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l 378 (1069)
..++-.. . +. ..++ +.-|.+
T Consensus 233 snIaVd~--------~-------------------------------------------~R---k~La------qaep~l 252 (550)
T KOG4224|consen 233 SNIAVDR--------R-------------------------------------------AR---KILA------QAEPKL 252 (550)
T ss_pred hhhhhhH--------H-------------------------------------------HH---HHHH------hcccch
Confidence 5554310 0 00 0011 112345
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhHhhhchhHHhhhh
Q 001487 379 SEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFH 458 (1069)
Q Consensus 379 ~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 458 (1069)
+|.+.+.+.+++.+++.-|-.+|+.++........-.-..-+|.+++.++++.....-+...|+..++-+-..+. .-.-
T Consensus 253 v~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~-lI~d 331 (550)
T KOG4224|consen 253 VPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEV-LIAD 331 (550)
T ss_pred HHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCccc-ceec
Confidence 666667777888888888888888887654321111111245788888888877777777788877765433322 1123
Q ss_pred hhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhHhhh
Q 001487 459 PQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHF 538 (1069)
Q Consensus 459 ~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~i~~~l~~~l~~~~~~v~~~al~~l~~l~~~~~~~~ 538 (1069)
..++..|+..|....+..++-+|...|..++.......-.-.-..-+|.+..++-+..-++++..-.|++.++..-. +
T Consensus 332 agfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~--~ 409 (550)
T KOG4224|consen 332 AGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALNDN--D 409 (550)
T ss_pred ccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhccc--c
Confidence 35667778888764567799999999999886543221111122346888888888889999999999998875432 2
Q ss_pred HhhH--hhhhHHHHHHHhhccCccccchhhHHHHHHHHHHHhh
Q 001487 539 QKYY--DAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAV 579 (1069)
Q Consensus 539 ~~~~--~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~ 579 (1069)
..++ ..++|.|.... .++..++|+.+.++++.+...+
T Consensus 410 k~~lld~gi~~iLIp~t----~s~s~Ev~gNaAaAL~Nlss~v 448 (550)
T KOG4224|consen 410 KEALLDSGIIPILIPWT----GSESEEVRGNAAAALINLSSDV 448 (550)
T ss_pred HHHHhhcCCcceeeccc----CccchhhcccHHHHHHhhhhhh
Confidence 2232 24566666543 3345678888888888877654
No 78
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=98.62 E-value=0.0015 Score=69.97 Aligned_cols=409 Identities=15% Similarity=0.134 Sum_probs=208.3
Q ss_pred HHHHHHHHHHhhcc--hhhHHHHHHHHHHHHHhc-ccCCCCchhhHHHHHHhhcCCChhHHHHHHHHHHHhhhhhhhhcc
Q 001487 103 SLKSMLLQSIQLES--AKSISKKLCDTVSELASN-ILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLT 179 (1069)
Q Consensus 103 ~i~~~ll~~l~~e~--~~~vr~~~~~~i~~i~~~-~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~ 179 (1069)
.+.+-..+.++..+ .+.-|+.+...+..++.. .+|...-.+++=.+...+++.++..|+....++..+..-..+.
T Consensus 22 t~~qd~~~sfn~Spvs~r~~r~lls~l~yll~tge~f~e~~at~lff~i~KlFQhkd~~Lrq~VY~aIkelS~~tedv-- 99 (898)
T COG5240 22 TLLQDMNESFNKSPVSTRSARKLLSNLFYLLSTGELFPEATATNLFFAILKLFQHKDLYLRQCVYSAIKELSKLTEDV-- 99 (898)
T ss_pred HHHHHHHHHhccCCCChHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhhcchhh--
Confidence 34444455555432 334455444444444432 2333445678888889999999999987777766665432221
Q ss_pred hhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhCCcchHhHHHhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHH
Q 001487 180 PHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELA 259 (1069)
Q Consensus 180 ~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~l~~l~ 259 (1069)
--....+++-++......+|-.|++.|..++..- .++.+-..+.+..-+..+..+.+++-.--.+.
T Consensus 100 ---lm~tssiMkD~~~g~~~~~kp~AiRsL~~Vid~~-----------tv~~~er~l~~a~Vs~~~a~~saalv~aYhLl 165 (898)
T COG5240 100 ---LMGTSSIMKDLNGGVPDDVKPMAIRSLFSVIDGE-----------TVYDFERYLNQAFVSTSMARRSAALVVAYHLL 165 (898)
T ss_pred ---hHHHHHHHHhhccCCccccccHHHHHHHHhcCcc-----------hhhhHHHHhhhhccccchhhhhhHHHHhhhhc
Confidence 1122334444444423367777877776655421 12223333333344455555555432222222
Q ss_pred ccccHHHHHhHHHHHHHHHHHhcCC----------CcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHh
Q 001487 260 GTEPRFLRRQLVDVVGSMLQIAEAE----------SLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSM 329 (1069)
Q Consensus 260 ~~~~~~~~~~~~~l~~~l~~~~~~~----------~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 329 (1069)
-...........+.-+..+.....+ ..+.--...|+.+++.+-+..+ -...+++.++.
T Consensus 166 p~~~~~~~rw~ne~qeav~~l~q~p~~~~n~gy~Pn~~~isqYHalGlLyq~kr~dk----------ma~lklv~hf~-- 233 (898)
T COG5240 166 PNNFNQTKRWLNETQEAVLDLKQFPNQHGNEGYEPNGNPISQYHALGLLYQSKRTDK----------MAQLKLVEHFR-- 233 (898)
T ss_pred cccHHHHHHHHHHHHHHHhhHhhCcCccCCcccCCCCChHHHHHHHHHHHHHhcccH----------HHHHHHHHHhh--
Confidence 2121222222222222222221111 0111123445666655543210 01122222221
Q ss_pred hcCCCCCcccccCCCCCccccCCcchhhHHHHHHHHHHHcC-CccchHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhc
Q 001487 330 LLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALG-GNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGC 408 (1069)
Q Consensus 330 l~~~~~~~~~~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~-~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~ 408 (1069)
..... ....+....+......+. ..+.+..+-|++..++++.-..+..-+..++..++...
T Consensus 234 --~n~sm----------------knq~a~V~lvr~~~~ll~~n~q~~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~n 295 (898)
T COG5240 234 --GNASM----------------KNQLAGVLLVRATVELLKENSQALLQLRPFLNSWLSDKFEMVFLEAARAVCALSEEN 295 (898)
T ss_pred --ccccc----------------ccchhheehHHHHHHHHHhChHHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhc
Confidence 11100 000111111111221111 13567778899999999865555555555555554322
Q ss_pred HHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHh
Q 001487 409 AKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNF 488 (1069)
Q Consensus 409 ~~~~~~~~~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l 488 (1069)
.-.+.+++.++.+...|..+....|.+|.+.|.+++...+..+ ...+ +.+-..+.| .+.. -+..|+..+
T Consensus 296 --v~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv--~vcN---~evEsLIsd-~Nr~---IstyAITtL 364 (898)
T COG5240 296 --VGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKV--SVCN---KEVESLISD-ENRT---ISTYAITTL 364 (898)
T ss_pred --cCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCcee--eecC---hhHHHHhhc-cccc---chHHHHHHH
Confidence 0114566778888888889999999999999999997765433 1112 222233444 4443 345666777
Q ss_pred hhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhHhhhHhhHhhhhHHHHHHHhhccCccccchhhHH
Q 001487 489 SENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKS 568 (1069)
Q Consensus 489 ~~~~~~~~~~~~l~~i~~~l~~~l~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~a 568 (1069)
.+....+ ..+.++..+...+.+-+...+--++.++.+++..++..-..| +.+|.+.+.+. ...+.|..+
T Consensus 365 LKTGt~e----~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~----l~FL~~~L~~e---Gg~eFK~~~ 433 (898)
T COG5240 365 LKTGTEE----TIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSY----LDFLGSSLLQE---GGLEFKKYM 433 (898)
T ss_pred HHcCchh----hHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHH----HHHHHHHHHhc---ccchHHHHH
Confidence 7765433 456666666666666666666677888888877766554334 44555555442 234567777
Q ss_pred HHHHHHHHHhh
Q 001487 569 MECISLVGMAV 579 (1069)
Q Consensus 569 ~~~l~~l~~~~ 579 (1069)
.++++.+...+
T Consensus 434 Vdaisd~~~~~ 444 (898)
T COG5240 434 VDAISDAMEND 444 (898)
T ss_pred HHHHHHHHhhC
Confidence 77776665444
No 79
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.60 E-value=0.0023 Score=70.78 Aligned_cols=112 Identities=14% Similarity=0.146 Sum_probs=69.6
Q ss_pred CHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCCChhHHHHHHHHHHHhhhhhhh
Q 001487 97 SLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGD 176 (1069)
Q Consensus 97 ~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~ 176 (1069)
+++....+-.-++..|++ +.+-+|+.+..++.++.-. +| .....-+|.+.+-+.++|+.+..+|..++..++..-+.
T Consensus 138 TpdLARDLa~Dv~tLL~s-skpYvRKkAIl~lykvFLk-YP-eAlr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPk 214 (877)
T KOG1059|consen 138 TPDLARDLADDVFTLLNS-SKPYVRKKAILLLYKVFLK-YP-EALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQ 214 (877)
T ss_pred CchhhHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHh-hh-HhHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCc
Confidence 566556666677777776 5677777777666666553 34 34455667777777788888888888877777776655
Q ss_pred hcchhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHh
Q 001487 177 TLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQC 215 (1069)
Q Consensus 177 ~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~ 215 (1069)
.+-+ +-|.|...|....+--+-...++.++.+...
T Consensus 215 nyL~----LAP~ffkllttSsNNWmLIKiiKLF~aLtpl 249 (877)
T KOG1059|consen 215 NYLQ----LAPLFYKLLVTSSNNWVLIKLLKLFAALTPL 249 (877)
T ss_pred cccc----ccHHHHHHHhccCCCeehHHHHHHHhhcccc
Confidence 4332 3344444444432334445566666666554
No 80
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.57 E-value=9.2e-06 Score=93.85 Aligned_cols=301 Identities=17% Similarity=0.189 Sum_probs=189.9
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHHHhhCCcchHhHHHhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHccccH--
Q 001487 187 AVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPR-- 264 (1069)
Q Consensus 187 ~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~-- 264 (1069)
+.+..+++.-...+.+..|+..|..+..++.+ ...+. .++..+..++.++..++|..|+..+.+++..-.+
T Consensus 425 s~lts~IR~lk~~~tK~~ALeLl~~lS~~i~d---e~~LD----RVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~ 497 (1431)
T KOG1240|consen 425 SVLTSCIRALKTIQTKLAALELLQELSTYIDD---EVKLD----RVLPYFVHLLMDSEADVRATALETLTELLALVRDIP 497 (1431)
T ss_pred HHHHHHHHhhhcchhHHHHHHHHHHHhhhcch---HHHHh----hhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCC
Confidence 33444443333457788999999999888743 22233 4455555666788999999999999887753211
Q ss_pred -HHHHhHH-HHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccC
Q 001487 265 -FLRRQLV-DVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSA 342 (1069)
Q Consensus 265 -~~~~~~~-~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~ 342 (1069)
.=...++ -++|.+-..+.+. ....+|..-..++..+++. . ..|+..... +-.. ...++++
T Consensus 498 ~~daniF~eYlfP~L~~l~~d~-~~~~vRiayAsnla~LA~t---A-------~rFle~~q~-~~~~--g~~n~~n---- 559 (1431)
T KOG1240|consen 498 PSDANIFPEYLFPHLNHLLNDS-SAQIVRIAYASNLAQLAKT---A-------YRFLELTQE-LRQA--GMLNDPN---- 559 (1431)
T ss_pred cccchhhHhhhhhhhHhhhccC-ccceehhhHHhhHHHHHHH---H-------HHHHHHHHH-HHhc--ccccCcc----
Confidence 1011111 1344443433322 3456777777788888772 1 112221111 0000 0011100
Q ss_pred CCCCccccCCcchhhHHHHHHHHHHHcCCccchHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHH
Q 001487 343 ETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSM 422 (1069)
Q Consensus 343 ~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~i~~~ 422 (1069)
++. .....++.-.. .+...+-..+..++.++++.+|.+-+..++-++.-.+. .+.=+-+++.
T Consensus 560 ---set-~~~~~~~~~~~------------~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk--~ksND~iLsh 621 (1431)
T KOG1240|consen 560 ---SET-APEQNYNTELQ------------ALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGK--EKSNDVILSH 621 (1431)
T ss_pred ---ccc-ccccccchHHH------------HHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhh--cccccchHHH
Confidence 000 00001111111 12223334455677888899999988887777653322 0112347899
Q ss_pred HHhhCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchH
Q 001487 423 VLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLD 502 (1069)
Q Consensus 423 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~ 502 (1069)
+...|+|.++..|.+-+..|.-++-..+.. ...+-++|.+.++|.| +.+.|-..|..++..+++..--+ .+++-
T Consensus 622 LiTfLNDkDw~LR~aFfdsI~gvsi~VG~r---s~seyllPLl~Q~ltD-~EE~Viv~aL~~ls~Lik~~ll~--K~~v~ 695 (1431)
T KOG1240|consen 622 LITFLNDKDWRLRGAFFDSIVGVSIFVGWR---SVSEYLLPLLQQGLTD-GEEAVIVSALGSLSILIKLGLLR--KPAVK 695 (1431)
T ss_pred HHHHhcCccHHHHHHHHhhccceEEEEeee---eHHHHHHHHHHHhccC-cchhhHHHHHHHHHHHHHhcccc--hHHHH
Confidence 999999999999999888887766665543 2355688999999999 89999999999999999864322 47888
Q ss_pred HHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhHh
Q 001487 503 GIVSKLLVLLQNGKQMVQEGALTALASVADSSQE 536 (1069)
Q Consensus 503 ~i~~~l~~~l~~~~~~v~~~al~~l~~l~~~~~~ 536 (1069)
.+++....++-.++.-+|..++..|..++...+.
T Consensus 696 ~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls~ 729 (1431)
T KOG1240|consen 696 DILQDVLPLLCHPNLWIRRAVLGIIAAIARQLSA 729 (1431)
T ss_pred HHHHhhhhheeCchHHHHHHHHHHHHHHHhhhhh
Confidence 9999999999999999999999999999887663
No 81
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.57 E-value=3.5e-05 Score=81.03 Aligned_cols=165 Identities=17% Similarity=0.180 Sum_probs=132.6
Q ss_pred hHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhHhhhchhHH
Q 001487 375 VPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQ 454 (1069)
Q Consensus 375 ~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~ 454 (1069)
.+.++..+.....+..|+.|......+..+.....-.-.+.+.+++..+.....|++..+|..|+.+|+..+...+...
T Consensus 215 ~~~il~q~~ss~ts~~~~~ritd~Af~ael~~~~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv- 293 (533)
T KOG2032|consen 215 MGKILAQLLSSITSEKENGRITDIAFFAELKRPKELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKV- 293 (533)
T ss_pred HHHHHhhcccccchhcccchHHHHHHHHHHhCcccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHH-
Confidence 3344444444555677888888777777765432111114567788888888999999999999999999999877777
Q ss_pred hhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhh
Q 001487 455 NQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSS 534 (1069)
Q Consensus 455 ~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~i~~~l~~~l~~~~~~v~~~al~~l~~l~~~~ 534 (1069)
..|.+.++..++..|-|..+..|+..+..+|..+.+......+.+|+-++.-.+...+.+.+.++|..++..+|.++...
T Consensus 294 ~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~ 373 (533)
T KOG2032|consen 294 RTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLA 373 (533)
T ss_pred HHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHc
Confidence 68899999999999888567899999999999999887777789999999999999999999999999999999999888
Q ss_pred HhhhHh
Q 001487 535 QEHFQK 540 (1069)
Q Consensus 535 ~~~~~~ 540 (1069)
|..-+.
T Consensus 374 g~~~e~ 379 (533)
T KOG2032|consen 374 GGGWEE 379 (533)
T ss_pred CCCchh
Confidence 765444
No 82
>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope. Karyopherins, which may act as importins or exportins, are part of the Importin-beta super-family, which all share a similar three-dimensional structure. Members of the importin-beta (karyopherin-beta) family can bind and transport cargo by themselves, or can form heterodimers with importin-alpha. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Importin-beta is a helicoidal molecule constructed from 19 HEAT repeats. Many nuclear pore proteins contain FG sequence repeats that can bind to HEAT repeats within importins [, ], which is important for importin-beta mediated transport. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. As a result, the N-terminal auto-inhibitory region on importin-alpha is free to loop back and bind to the major NLS-binding site, causing the cargo to be released []. There are additional release factors as well. This entry represents the N-terminal domain of karyopherins that is important for the binding of the Ran protein []. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport; PDB: 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 1IBR_D 1QGR_A 3LWW_A 1F59_A 2Q5D_A ....
Probab=98.55 E-value=2.9e-07 Score=75.00 Aligned_cols=67 Identities=33% Similarity=0.542 Sum_probs=59.8
Q ss_pred HHHHHHHhhhcCchHHHHHHHHHHcc-CCCHHHHHHHHHHHHhhcccCCCCccc--------CCCHHHHHHHHHHHHHHH
Q 001487 42 AELLFNLCKQQDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDDSFLWP--------RLSLHTQSSLKSMLLQSI 112 (1069)
Q Consensus 42 A~~~L~~~~~~~p~~~~~~L~~il~~-~~~~~~R~~a~i~L~~~i~~~~~~~w~--------~l~~~~~~~i~~~ll~~l 112 (1069)
||++|+++.+++|++ ...|++++.+ +.++.+|++|+++||+.|.++ |. .++++.+..||+.+++.|
T Consensus 1 AE~~L~~~~~~~p~~-~~~l~~il~~~~~~~~~R~~A~i~LKn~I~~~----W~~~~~~~~~~~~~~~k~~Ik~~ll~~l 75 (77)
T PF03810_consen 1 AEQQLKQFQKQNPGF-WQYLLQILSSNSQDPEVRQLAAILLKNLIKKN----WSPSKQKGWSQLPEEEKEQIKSQLLQLL 75 (77)
T ss_dssp HHHHHHHHHHSCTCH-HHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHS----GGHHHHHHHHGSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhH-HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHc----CchhhccCCCCCCHHHHHHHHHHHHHHH
Confidence 789999999933664 6999999965 668999999999999999998 88 999999999999999987
Q ss_pred h
Q 001487 113 Q 113 (1069)
Q Consensus 113 ~ 113 (1069)
.
T Consensus 76 ~ 76 (77)
T PF03810_consen 76 L 76 (77)
T ss_dssp H
T ss_pred c
Confidence 5
No 83
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.50 E-value=0.0011 Score=73.22 Aligned_cols=260 Identities=16% Similarity=0.216 Sum_probs=155.0
Q ss_pred CCchhhHHHHHHhhcCCChhHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhCC
Q 001487 139 NGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTS 218 (1069)
Q Consensus 139 ~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~ 218 (1069)
+.-.++-+.++.++.++.+.+|..|+.++..++..+++.+++. +|.+..-|.++ ++.|..+|+..+..++..-+
T Consensus 140 dLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr~~----FprL~EkLeDp-Dp~V~SAAV~VICELArKnP- 213 (877)
T KOG1059|consen 140 DLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALRPC----FPRLVEKLEDP-DPSVVSAAVSVICELARKNP- 213 (877)
T ss_pred hhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHhhh----HHHHHHhccCC-CchHHHHHHHHHHHHHhhCC-
Confidence 4456788889999999999999999999999998888876554 45566678888 99999999999999988743
Q ss_pred cchHhHHHhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHccccHHHHHhHHHHHHHHHHHhcCCCcchHHHHHHHHHH
Q 001487 219 SADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFV 298 (1069)
Q Consensus 219 ~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l 298 (1069)
..+-.+-|.+.+.+.. +.+..+....+.+|+.+.-..|..-.+ +++.+..++.. ........+|+
T Consensus 214 ----knyL~LAP~ffklltt---SsNNWmLIKiiKLF~aLtplEPRLgKK----Lieplt~li~s----T~AmSLlYECv 278 (877)
T KOG1059|consen 214 ----QNYLQLAPLFYKLLVT---SSNNWVLIKLLKLFAALTPLEPRLGKK----LIEPITELMES----TVAMSLLYECV 278 (877)
T ss_pred ----cccccccHHHHHHHhc---cCCCeehHHHHHHHhhccccCchhhhh----hhhHHHHHHHh----hHHHHHHHHHH
Confidence 4456667777776554 445567777888888877655543333 33433333321 11111223344
Q ss_pred HHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCcchhhHHHHHHHHHHHcCCccchHHH
Q 001487 299 ITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVA 378 (1069)
Q Consensus 299 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l 378 (1069)
.+++.. .+....++. ...+..|++.+...-++ ++.+....+.-++..+....+ ..+..-
T Consensus 279 NTVVa~-----s~s~g~~d~-~asiqLCvqKLr~fied-------------sDqNLKYlgLlam~KI~ktHp--~~Vqa~ 337 (877)
T KOG1059|consen 279 NTVVAV-----SMSSGMSDH-SASIQLCVQKLRIFIED-------------SDQNLKYLGLLAMSKILKTHP--KAVQAH 337 (877)
T ss_pred HHheee-----hhccCCCCc-HHHHHHHHHHHhhhhhc-------------CCccHHHHHHHHHHHHhhhCH--HHHHHh
Confidence 333331 111111111 22334444444322111 122334445556666665543 223333
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCCh-hHHHHHHHHHHHhH
Q 001487 379 SEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHP-RVRWAAINAIGQLS 446 (1069)
Q Consensus 379 ~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~d~~~-~vr~~a~~~l~~l~ 446 (1069)
-..+..++.|.+..+|--|+..+..++.. ..+..|+..++..+...++ ..|..-+.-+-.+|
T Consensus 338 kdlIlrcL~DkD~SIRlrALdLl~gmVsk------kNl~eIVk~LM~~~~~ae~t~yrdell~~II~iC 400 (877)
T KOG1059|consen 338 KDLILRCLDDKDESIRLRALDLLYGMVSK------KNLMEIVKTLMKHVEKAEGTNYRDELLTRIISIC 400 (877)
T ss_pred HHHHHHHhccCCchhHHHHHHHHHHHhhh------hhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHh
Confidence 45566788888888888888888776643 4566677777666654444 55555444333333
No 84
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=98.48 E-value=1.1e-05 Score=93.61 Aligned_cols=208 Identities=14% Similarity=0.232 Sum_probs=166.9
Q ss_pred ccchHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcH-HHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhHhhhc
Q 001487 372 NTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCA-KVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLG 450 (1069)
Q Consensus 372 ~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~-~~~~~~~~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~ 450 (1069)
.++++.+-+.+...+.|++|+.|..|+..+..+.+... +....+..-+...+-..+.|.|..|...|+.+|..++..++
T Consensus 248 ~di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr 327 (815)
T KOG1820|consen 248 VDILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLR 327 (815)
T ss_pred hhhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcc
Confidence 56777777888888899999999999999988887665 22333444555566667889999999999999999999999
Q ss_pred hhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHH
Q 001487 451 PDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASV 530 (1069)
Q Consensus 451 ~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~i~~~l~~~l~~~~~~v~~~al~~l~~l 530 (1069)
..+ .+|...++|.++..+.+ ..+.+|..+..++..++.. ..+..+.+.+...+.+.++.++......++..
T Consensus 328 ~~~-~~~~~~v~p~lld~lke-kk~~l~d~l~~~~d~~~ns-------~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~ 398 (815)
T KOG1820|consen 328 PLF-RKYAKNVFPSLLDRLKE-KKSELRDALLKALDAILNS-------TPLSKMSEAILEALKGKNPQIKGECLLLLDRK 398 (815)
T ss_pred hhh-HHHHHhhcchHHHHhhh-ccHHHHHHHHHHHHHHHhc-------ccHHHHHHHHHHHhcCCChhhHHHHHHHHHHH
Confidence 887 78999999999999999 8899999988888888773 34566677888888999999999999999988
Q ss_pred HHhhHhh--hHhhHhhhhHHHHHHHhhccCccccchhhHHHHHHHHHHHhhChhhhhhhHHHHH
Q 001487 531 ADSSQEH--FQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVM 592 (1069)
Q Consensus 531 ~~~~~~~--~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i~ 592 (1069)
....+.. +..-...++|.+....++ ....+|..++++++.+.+.+|.+.|..++..+-
T Consensus 399 ~~~~~~~~~~~~t~~~l~p~~~~~~~D----~~~~VR~Aa~e~~~~v~k~~Ge~~~~k~L~~~~ 458 (815)
T KOG1820|consen 399 LRKLGPKTVEKETVKTLVPHLIKHIND----TDKDVRKAALEAVAAVMKVHGEEVFKKLLKDLD 458 (815)
T ss_pred HhhcCCcCcchhhHHHHhHHHhhhccC----CcHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhc
Confidence 8877732 334567788888776544 345689999999999999999776666655443
No 85
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.45 E-value=0.0088 Score=70.39 Aligned_cols=159 Identities=13% Similarity=0.120 Sum_probs=103.8
Q ss_pred chhhHHHHHHhhcCCChhH-HHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhCCc
Q 001487 141 WPELLPFMFQCVSSDSVKL-QESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSS 219 (1069)
Q Consensus 141 w~~ll~~l~~~~~~~~~~~-r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~ 219 (1069)
.+.++..+++.+.+..+.. ..++....+.+.......+...+-.-+..++..+... +...|...+++++.++...-..
T Consensus 268 ~~sl~~~Iir~I~~~~~~~~d~~g~k~v~~fL~elS~~~P~l~~~~l~~lv~lld~e-s~~lRnavlei~~n~V~~~l~d 346 (1251)
T KOG0414|consen 268 SVSLAGNIIRSIGSPEPNEKDCAGPKIVGNFLVELSERVPKLMLRQLTLLVDLLDSE-SYTLRNAVLEICANLVASELRD 346 (1251)
T ss_pred cHHHHHHHHHHhcccchhcccccchhhHHHHHHHHHHHhHHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHHHHHHhcc
Confidence 4778888888877666554 3344455555554444333223333444555566665 8999999999999988764322
Q ss_pred ch-HhHHHhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHccccHHHHHhHHHHHHHHHHHhcCCCcchHHHHHHHHHH
Q 001487 220 AD-RDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFV 298 (1069)
Q Consensus 220 ~~-~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l 298 (1069)
.. ......+-..+++.+.+.+.+-++-+|..+++.|..+.+......+ ...+++......+. |-+.-||..|++.+
T Consensus 347 ~e~~~~sk~~r~~~le~l~erl~Dvsa~vRskVLqv~~~l~~~~s~p~~-~~~eV~~la~grl~--DkSslVRk~Ai~Ll 423 (1251)
T KOG0414|consen 347 EELEEMSKSLRDELLELLRERLLDVSAYVRSKVLQVFRRLFQQHSIPLG-SRTEVLELAIGRLE--DKSSLVRKNAIQLL 423 (1251)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHccCCCcc-HHHHHHHHHhcccc--cccHHHHHHHHHHH
Confidence 22 2333333334888888888888999999999999999876543322 23455555554443 23566899999999
Q ss_pred HHHHH
Q 001487 299 ITLAE 303 (1069)
Q Consensus 299 ~~l~~ 303 (1069)
..+..
T Consensus 424 ~~~L~ 428 (1251)
T KOG0414|consen 424 SSLLD 428 (1251)
T ss_pred HHHHh
Confidence 88877
No 86
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.36 E-value=2.9e-06 Score=76.82 Aligned_cols=111 Identities=19% Similarity=0.226 Sum_probs=90.0
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHH-HHHHHHHhhCCCCChhHHHHHHHHHHHhHhhhchhHHhh
Q 001487 378 ASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLE-QVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQ 456 (1069)
Q Consensus 378 l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~-~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 456 (1069)
+++.+.+.+.+.+|..|..++.+++.++...+........ .+++.+.+.+.++++.++..|+++|+.++...+... ..
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~-~~ 86 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNK-LI 86 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHH-HH
Confidence 4555666777888999999999999999876654444455 788999999999999999999999999997654333 22
Q ss_pred h-hhhhHHHHHhhccCCCChhHHHHHHHHHHHhhh
Q 001487 457 F-HPQVLPALAGAMDDFQNPRVQAHAASAVLNFSE 490 (1069)
Q Consensus 457 ~-~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~ 490 (1069)
. -..+++.+.+.+++ .+..++..++++|..+++
T Consensus 87 ~~~~g~l~~l~~~l~~-~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 87 VLEAGGVPKLVNLLDS-SNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHCCChHHHHHHHhc-CCHHHHHHHHHHHHHhhC
Confidence 2 34589999999999 789999999999998763
No 87
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=98.35 E-value=0.0011 Score=73.10 Aligned_cols=237 Identities=14% Similarity=0.181 Sum_probs=147.9
Q ss_pred CcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhHhhhHhhHhhhhHHHHHHHhhc-cCccccchhhHHHHH
Q 001487 493 TPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNA-TDKSNRMLRAKSMEC 571 (1069)
Q Consensus 493 ~~~~~~~~l~~i~~~l~~~l~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~-~~~~~~~lr~~a~~~ 571 (1069)
..+.+.|+.+.++..|+..+..+...--+..+.|+-.+....++...|+...+++.|..+++.- .++.....-...+|+
T Consensus 16 ~~~di~p~~~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEs 95 (435)
T PF03378_consen 16 SKADIQPFAQQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFES 95 (435)
T ss_dssp -GGGTTCCHHHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHH
T ss_pred CHHHhhhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHH
Confidence 3466889999999999999987655555778999999999999999999988888888877552 223334455668999
Q ss_pred HHHHHHhhCh---hhhhhhHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHHHhc-CCcccchhhhhHHHHHhcccCC
Q 001487 572 ISLVGMAVGK---DKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLG-QDFLPYMSVVMPPLLQSAQLKP 647 (1069)
Q Consensus 572 l~~l~~~~~~---~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~l~~i~~~ll~~~~~~~ 647 (1069)
++.+.+.+.+ +....+-..+++.+..+..+++ ....+|++..++.+.+... +.+.+....++|.++.-.
T Consensus 96 i~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV---~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~---- 168 (435)
T PF03378_consen 96 IGALIRFVCEADPEAVSQFEEALFPPFQEILQQDV---QEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPA---- 168 (435)
T ss_dssp HHHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT----TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGG----
T ss_pred HHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcc----
Confidence 9999887652 2223444555565555333322 2357788888888877765 455555556666655322
Q ss_pred CccccCCCCccccccCCCcccchhhcCCceeeeccchHHHHHHHHHHHHHHHHHhhhccc--ccHHHHHHHHhhccCCcC
Q 001487 648 DVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFF--PWIDQVAPTLVPLLKFYF 725 (1069)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~a~~~l~~l~~~~~~~~~--p~~~~~~~~l~~~l~~~~ 725 (1069)
-|+. .+.+ =...+.|..+....+..+. +++..++..+-++++...
T Consensus 169 -------------------lWe~-----------~gni---PalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~ 215 (435)
T PF03378_consen 169 -------------------LWER-----------RGNI---PALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKA 215 (435)
T ss_dssp -------------------GGGS-----------TTTH---HHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TT
T ss_pred -------------------hhcc-----------CCCc---CcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCC
Confidence 2321 0000 1235678888888777664 678888888888887543
Q ss_pred ChHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHccCCcHHH
Q 001487 726 HEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEI 784 (1069)
Q Consensus 726 ~~~ir~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~v 784 (1069)
++ ..+...|..++..+ +.+.+.+++..++..++..+.+.+....
T Consensus 216 ~D---~~gF~LL~~iv~~~------------p~~~l~~yl~~I~~lll~RLq~skT~kf 259 (435)
T PF03378_consen 216 ND---HYGFDLLESIVENL------------PPEALEPYLKQIFTLLLTRLQSSKTEKF 259 (435)
T ss_dssp CH---HHHHHHHHHHHHHS-------------HHHHGGGHHHHHHHHHHHHHHC--HHH
T ss_pred cc---hHHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHHHhhCCcHHH
Confidence 33 55777777777654 2334566777777777777765443333
No 88
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=98.33 E-value=5.4e-06 Score=69.23 Aligned_cols=95 Identities=20% Similarity=0.234 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHhHhhhhhhhhhHhHHHHHHhhccCCChhHHHhhhHHHHHHHhhcCCCchHHHHHHHHHHHHhhcCCC
Q 001487 898 ERRIAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPN 977 (1069)
Q Consensus 898 ~r~~a~~~l~~l~~~~~~~~~~~~~~l~~~ll~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~~l~~L~~~l~~~~ 977 (1069)
.|..++-+++.+...++..+.+|+++|+|.++.++.|+++.||-.|+.+|..++...+..+.+++.+++..|.+.+.+++
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d 81 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPD 81 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 36778888999999999988889999999999999999999999999999999999999999999999999999998774
Q ss_pred CCChhhhhhHHHHHHHHHHHHh
Q 001487 978 ALQPENLMAYDNAVSALGKICQ 999 (1069)
Q Consensus 978 ~~~~~~~~~~~~~~~~l~~i~~ 999 (1069)
..+|. ++..+-|+++
T Consensus 82 ------~~Vr~-~a~~Ld~llk 96 (97)
T PF12755_consen 82 ------ENVRS-AAELLDRLLK 96 (97)
T ss_pred ------hhHHH-HHHHHHHHhc
Confidence 34554 4466666543
No 89
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.32 E-value=0.0054 Score=67.69 Aligned_cols=385 Identities=15% Similarity=0.178 Sum_probs=205.5
Q ss_pred hhcCCChhHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhCCcchHhHHHhhHH
Q 001487 151 CVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLP 230 (1069)
Q Consensus 151 ~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~ 230 (1069)
++.++....+..+-..+..+.+.-.+ .+..++..+.+-|.+. ++.-...|+.+++.+-..- ..+.|..
T Consensus 82 LLss~kysEKqIGYl~is~L~n~n~d----l~klvin~iknDL~sr-n~~fv~LAL~~I~niG~re----~~ea~~~--- 149 (938)
T KOG1077|consen 82 LLSSNKYSEKQIGYLFISLLLNENSD----LMKLVINSIKNDLSSR-NPTFVCLALHCIANIGSRE----MAEAFAD--- 149 (938)
T ss_pred HhhcCCccHHHHhHHHHHHHHhcchH----HHHHHHHHHHhhhhcC-CcHHHHHHHHHHHhhccHh----HHHHhhh---
Confidence 34444445555666666666554322 3444555555555554 6666667888777665431 2233333
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHHccccHHHHHhHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHhhhccch
Q 001487 231 LMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPG 310 (1069)
Q Consensus 231 ~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~ 310 (1069)
.+-+.|.. .+...-+++.+.-||..+.+..|+.+.+ ......++.++++. +-.+...+..++..+++ +.|.
T Consensus 150 DI~KlLvS--~~~~~~vkqkaALclL~L~r~spDl~~~--~~W~~riv~LL~D~--~~gv~ta~~sLi~~lvk---~~p~ 220 (938)
T KOG1077|consen 150 DIPKLLVS--GSSMDYVKQKAALCLLRLFRKSPDLVNP--GEWAQRIVHLLDDQ--HMGVVTAATSLIEALVK---KNPE 220 (938)
T ss_pred hhHHHHhC--CcchHHHHHHHHHHHHHHHhcCccccCh--hhHHHHHHHHhCcc--ccceeeehHHHHHHHHH---cCCH
Confidence 23233332 1223456777888888888877766544 23334444455432 34455566667777776 3332
Q ss_pred hhhcchhhHHHHHHHHHHhhcCCC----CC-cccccCCCCCccccCCcchhhHHHHHHHHHHHcCCc---cchHHHHHHH
Q 001487 311 MMRKLPQFINRLFAILMSMLLDIE----DD-PLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGN---TIVPVASEQL 382 (1069)
Q Consensus 311 ~~~~~~~~~~~l~~~l~~~l~~~~----~~-~~~~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~---~~~~~l~~~l 382 (1069)
.....++..+..+.+.. -+ .++.. -....+|- ..+++..+. .+++. .....+.+.+
T Consensus 221 -------~yk~~~~~avs~L~riv~~~~t~~qdYTy-------y~vP~PWL-~vKl~rlLq-~~p~~~D~~~r~~l~evl 284 (938)
T KOG1077|consen 221 -------SYKTCLPLAVSRLSRIVVVVGTSLQDYTY-------YFVPAPWL-QVKLLRLLQ-IYPTPEDPSTRARLNEVL 284 (938)
T ss_pred -------HHhhhHHHHHHHHHHHHhhcccchhhcee-------ecCCChHH-HHHHHHHHH-hCCCCCCchHHHHHHHHH
Confidence 22223333333222110 00 00000 00112331 222232222 22221 1222233333
Q ss_pred HHhhc-------CCChHH---HHHHHH-HHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhHhhhch
Q 001487 383 PAYLA-------APEWQK---HHAALI-ALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGP 451 (1069)
Q Consensus 383 ~~~l~-------~~~~~~---r~aal~-~l~~l~~~~~~~~~~~~~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 451 (1069)
...++ +.+... +.|.+. ++.-+...-+ -...+..-+..+-+.+.+.++.+|.-|+..+..++..- .
T Consensus 285 ~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~--e~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~-~ 361 (938)
T KOG1077|consen 285 ERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDS--EPELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSE-F 361 (938)
T ss_pred HHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCC--cHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhcc-c
Confidence 33332 233332 333332 2222222111 11234455667777889999999999999998888652 2
Q ss_pred hHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHH
Q 001487 452 DLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVA 531 (1069)
Q Consensus 452 ~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~i~~~l~~~l~~~~~~v~~~al~~l~~l~ 531 (1069)
. .+.+..-...++..|+..++..+|..|...|-.+|+.-+ ...|+..+++.+.+.+..+|+....-++.++
T Consensus 362 s--~davK~h~d~Ii~sLkterDvSirrravDLLY~mcD~~N-------ak~IV~elLqYL~tAd~sireeivlKvAILa 432 (938)
T KOG1077|consen 362 S--IDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCDVSN-------AKQIVAELLQYLETADYSIREEIVLKVAILA 432 (938)
T ss_pred h--HHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhchhh-------HHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 1 233333466677788843888999999999999987643 4567888888888899999999998889999
Q ss_pred HhhHhhhHhhHhhhhHHHHHHHhhccCccccchhhHHHHHHHHHHH-hhChhhhhhhH-HHHHHHH
Q 001487 532 DSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGM-AVGKDKFRDDA-KQVMEVL 595 (1069)
Q Consensus 532 ~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~l~~-~~~~~~~~~~~-~~i~~~l 595 (1069)
+....++.=|.+.+++.+.-. .+..+++. +-.+.. .+..+.+.+|+ ..+++.|
T Consensus 433 EKyAtDy~WyVdviLqLiria-gd~vsdeV----------W~RvvQiVvNnedlq~yaak~~fe~L 487 (938)
T KOG1077|consen 433 EKYATDYSWYVDVILQLIRIA-GDYVSDEV----------WYRVVQIVVNNEDLQGYAAKRLFEYL 487 (938)
T ss_pred HHhcCCcchhHHHHHHHHHHh-cccccHHH----------HHHhheeEecchhhhHHHHHHHHHHH
Confidence 887777666777666655432 33333332 222222 23456677774 3444544
No 90
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.28 E-value=0.012 Score=65.57 Aligned_cols=173 Identities=12% Similarity=0.226 Sum_probs=100.7
Q ss_pred ChHHHHHHHHHHHHHHccccHHHHHhHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHH
Q 001487 244 NEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLF 323 (1069)
Q Consensus 244 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~ 323 (1069)
|..+....+.-+.++.....+. +.+++--++..+. ..+-++|..++++...++.. .-+..++
T Consensus 293 dnnvklIvldrl~~l~~~~~~i----l~~l~mDvLrvLs--s~dldvr~Ktldi~ldLvss------------rNvediv 354 (948)
T KOG1058|consen 293 DNNVKLIVLDRLSELKALHEKI----LQGLIMDVLRVLS--SPDLDVRSKTLDIALDLVSS------------RNVEDIV 354 (948)
T ss_pred CcchhhhhHHHHHHHhhhhHHH----HHHHHHHHHHHcC--cccccHHHHHHHHHHhhhhh------------ccHHHHH
Confidence 3344444444455444333333 3333333344443 34678999999998888773 1234445
Q ss_pred HHHHHhhcCCCCCcccccCCCCCccccCCcchhhHHHHHHHHHHHcCCccchHHHHHHHHHhhcCCChHHHHHHHHHHHH
Q 001487 324 AILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQ 403 (1069)
Q Consensus 324 ~~l~~~l~~~~~~~~~~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~ 403 (1069)
..+-+-+.+..+. |.++....+....+.+...+..++ ++...+++.+.+++.|.|...-...+..+..
T Consensus 355 ~~Lkke~~kT~~~----------e~d~~~~yRqlLiktih~cav~Fp--~~aatvV~~ll~fisD~N~~aas~vl~FvrE 422 (948)
T KOG1058|consen 355 QFLKKEVMKTHNE----------ESDDNGKYRQLLIKTIHACAVKFP--EVAATVVSLLLDFISDSNEAAASDVLMFVRE 422 (948)
T ss_pred HHHHHHHHhcccc----------ccccchHHHHHHHHHHHHHhhcCh--HHHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 5444443333211 001122223445666777777775 5677888999999999999887778888877
Q ss_pred HHhhcHHHHHHhHHHHHHHHHhhCC-CCChhHHHHHHHHHHHhHhhhc
Q 001487 404 IAEGCAKVMVKNLEQVLSMVLNSFR-DPHPRVRWAAINAIGQLSTDLG 450 (1069)
Q Consensus 404 l~~~~~~~~~~~~~~i~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~ 450 (1069)
..+..+..-.. ++..++..+. -.++.+-..|+|.+|.+++...
T Consensus 423 ~iek~p~Lr~~----ii~~l~~~~~~irS~ki~rgalwi~GeYce~~~ 466 (948)
T KOG1058|consen 423 AIEKFPNLRAS----IIEKLLETFPQIRSSKICRGALWILGEYCEGLS 466 (948)
T ss_pred HHHhCchHHHH----HHHHHHHhhhhhcccccchhHHHHHHHHHhhhH
Confidence 77766543332 3333333332 1455677889999999998754
No 91
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=98.27 E-value=2e-06 Score=64.28 Aligned_cols=55 Identities=33% Similarity=0.464 Sum_probs=52.4
Q ss_pred hHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHh
Q 001487 391 WQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQL 445 (1069)
Q Consensus 391 ~~~r~aal~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~d~~~~vr~~a~~~l~~l 445 (1069)
|.+|.+|+.+||.+++..++.+.++.+.+++.+...|+|+++.||.+|+++|+++
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 8899999999999999999999999999999999999999999999999999874
No 92
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=98.24 E-value=0.021 Score=65.52 Aligned_cols=135 Identities=13% Similarity=0.177 Sum_probs=109.7
Q ss_pred hhHhHHHHHHhhccCCChhHHHhhhHHHHHHHhhcCC-CchHHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHHHHH
Q 001487 920 YYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGS-VVKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKIC 998 (1069)
Q Consensus 920 ~~~~l~~~ll~~l~~~~~~vr~~a~~~lg~l~~~~~~-~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~l~~i~ 998 (1069)
++.+++|.+.+.++..+..+|.+-..+|..+..+.|. .+.|..+.++|.|.+.+.-++ ..+|-.+..++--+.
T Consensus 864 fF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D------~~v~vstl~~i~~~l 937 (1030)
T KOG1967|consen 864 FFCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPD------VIVRVSTLRTIPMLL 937 (1030)
T ss_pred HHHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCc------cchhhhHhhhhhHHH
Confidence 7789999999999988889999999999999998884 577999999999999998773 467778889998888
Q ss_pred hhcCCCC--CHhhHHHHHHhhCCCCCc---HHHHHHHHHHHHHHHhhcCC-cccCcCcCChhHHHHHHHHHhh
Q 001487 999 QFHRDSI--DAAQVVPAWLNCLPIKGD---LIEAKIVHEQLCSMVERSDS-DLLGPNHQYLPKIVSVFAEVSS 1065 (1069)
Q Consensus 999 ~~~~~~~--~~~~~~~~~l~~lp~~~d---~~~~~~~~~~l~~l~~~~~~-~~~~~~~~~~~~i~~~~~~~~~ 1065 (1069)
...++.. |++.++|.+|+. +...| ...+..++++|-.+.+..|. .+..+ -|++++++..+|.
T Consensus 938 ~~~~tL~t~~~~Tlvp~lLsl-s~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~f----r~~Vl~al~k~Ld 1005 (1030)
T KOG1967|consen 938 TESETLQTEHLSTLVPYLLSL-SSDNDNNMMVVREDALQCLNALTRRLPTKSLLSF----RPLVLRALIKILD 1005 (1030)
T ss_pred HhccccchHHHhHHHHHHHhc-CCCCCcchhHHHHHHHHHHHHHhccCCCcccccc----cHHHHHHhhhccC
Confidence 8888766 799999988874 32233 45678899999998874444 55555 9999999887763
No 93
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.21 E-value=0.0035 Score=68.67 Aligned_cols=295 Identities=18% Similarity=0.216 Sum_probs=176.2
Q ss_pred HHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhCCcchHhHHHhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHccc
Q 001487 183 KHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTE 262 (1069)
Q Consensus 183 ~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~~~ 262 (1069)
..+...+.....+. +..||..|++++..+-+.+. +-..+.+...+.+.+.++++|.+|++++.-+...+
T Consensus 197 ~~~~~~l~~~~~~~-D~~Vrt~A~eglL~L~eg~k----------L~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~ 265 (823)
T KOG2259|consen 197 EHAARGLIYLEHDQ-DFRVRTHAVEGLLALSEGFK----------LSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRC 265 (823)
T ss_pred HHHHHHHHHHhcCC-CcchHHHHHHHHHhhccccc----------ccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcC
Confidence 33444455566665 99999999999988776431 11134556667777889999999999888777766
Q ss_pred cHHH------HHhHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHH-HHHHhhcC---
Q 001487 263 PRFL------RRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFA-ILMSMLLD--- 332 (1069)
Q Consensus 263 ~~~~------~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~-~l~~~l~~--- 332 (1069)
|.-. .......+..+...+ .|.+-.+|..|.+.+..+-..+ ..++.+.+. .++..+..
T Consensus 266 p~~~e~e~~e~kl~D~aF~~vC~~v--~D~sl~VRV~AaK~lG~~~~vS----------ee~i~QTLdKKlms~lRRkr~ 333 (823)
T KOG2259|consen 266 PAPLERESEEEKLKDAAFSSVCRAV--RDRSLSVRVEAAKALGEFEQVS----------EEIIQQTLDKKLMSRLRRKRT 333 (823)
T ss_pred CCcccchhhhhhhHHHHHHHHHHHH--hcCceeeeehHHHHhchHHHhH----------HHHHHHHHHHHHhhhhhhhhh
Confidence 3111 122233333333333 2345567888887776654421 123332222 11111110
Q ss_pred -------CCCCcccccCC-------CCCccccCCcchhhHHHHHHHHHHHcCCccchHHHHHHHHHhhcCCChHHHHHHH
Q 001487 333 -------IEDDPLWHSAE-------TEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAAL 398 (1069)
Q Consensus 333 -------~~~~~~~~~~~-------~e~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal 398 (1069)
.....+|.... .|++|+++.+.-..+ .+| .+...+.|+-..+|.||.
T Consensus 334 ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sG---------ACG----------A~VhGlEDEf~EVR~AAV 394 (823)
T KOG2259|consen 334 AHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSG---------ACG----------ALVHGLEDEFYEVRRAAV 394 (823)
T ss_pred cccchHHHHhcCCcccCccccccCchhhcccccccccccc---------ccc----------eeeeechHHHHHHHHHHH
Confidence 00112343321 111111111111000 011 111233444578999999
Q ss_pred HHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHH
Q 001487 399 IALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQ 478 (1069)
Q Consensus 399 ~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~ 478 (1069)
..++.++...++ .-..-+.++...++|+-..||-.|..+|..++.++. .-+..++.++..|.| .++++|
T Consensus 395 ~Sl~~La~ssP~----FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~------i~eeql~~il~~L~D-~s~dvR 463 (823)
T KOG2259|consen 395 ASLCSLATSSPG----FAVRALDFLVDMFNDEIEVVRLKAIFALTMISVHLA------IREEQLRQILESLED-RSVDVR 463 (823)
T ss_pred HHHHHHHcCCCC----cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhe------ecHHHHHHHHHHHHh-cCHHHH
Confidence 999999987664 334566788889999999999999999999987742 234567777788888 889998
Q ss_pred HHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhHh
Q 001487 479 AHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQE 536 (1069)
Q Consensus 479 ~~a~~al~~l~~~~~~~~~~~~l~~i~~~l~~~l~~~~~~v~~~al~~l~~l~~~~~~ 536 (1069)
.+....|.. ++-.. ...+..++..+++.+... +.-|..++.|++.+...-+.
T Consensus 464 e~l~elL~~----~~~~d-~~~i~m~v~~lL~~L~ky-PqDrd~i~~cm~~iGqnH~~ 515 (823)
T KOG2259|consen 464 EALRELLKN----ARVSD-LECIDMCVAHLLKNLGKY-PQDRDEILRCMGRIGQNHRR 515 (823)
T ss_pred HHHHHHHHh----cCCCc-HHHHHHHHHHHHHHhhhC-CCCcHHHHHHHHHHhccChh
Confidence 876655533 23222 245667778888877754 44567889999998876554
No 94
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=98.18 E-value=0.00018 Score=75.29 Aligned_cols=203 Identities=12% Similarity=0.180 Sum_probs=145.3
Q ss_pred HHHHHHHHhhcCCChHHHHHHHH-HHHHHHhhcHHHHHHhHHHHHHHHHhhCCC-CChhHHHHHHHHHHHhHhhhchhHH
Q 001487 377 VASEQLPAYLAAPEWQKHHAALI-ALAQIAEGCAKVMVKNLEQVLSMVLNSFRD-PHPRVRWAAINAIGQLSTDLGPDLQ 454 (1069)
Q Consensus 377 ~l~~~l~~~l~~~~~~~r~aal~-~l~~l~~~~~~~~~~~~~~i~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~ 454 (1069)
.+...+.+.-.+.....|..|+. ..+.++++.-....+++.+|+-.+++.|.| .+..+|.-|++.|+.+++.-+..+
T Consensus 287 ~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l- 365 (516)
T KOG2956|consen 287 LVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARL- 365 (516)
T ss_pred HHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhh-
Confidence 34444444444556677777777 556667777778889999999999999999 888899999999999998866655
Q ss_pred hhhhhhhHHHHHhhccCCCChhHHHHHH-HHHHHhhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHh
Q 001487 455 NQFHPQVLPALAGAMDDFQNPRVQAHAA-SAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADS 533 (1069)
Q Consensus 455 ~~~~~~il~~l~~~l~~~~~~~v~~~a~-~al~~l~~~~~~~~~~~~l~~i~~~l~~~l~~~~~~v~~~al~~l~~l~~~ 533 (1069)
.++....+..++..-.| .++.|...|. .++..+....+. ..+..+.+.+ .+.+...-..++.++..++..
T Consensus 366 ~DstE~ai~K~Leaa~d-s~~~v~~~Aeed~~~~las~~P~----~~I~~i~~~I----lt~D~~~~~~~iKm~Tkl~e~ 436 (516)
T KOG2956|consen 366 FDSTEIAICKVLEAAKD-SQDEVMRVAEEDCLTTLASHLPL----QCIVNISPLI----LTADEPRAVAVIKMLTKLFER 436 (516)
T ss_pred hchHHHHHHHHHHHHhC-CchhHHHHHHHHHHHHHHhhCch----hHHHHHhhHH----hcCcchHHHHHHHHHHHHHhh
Confidence 67788888888888888 5555444443 344444444332 2233333333 334555555677788888877
Q ss_pred hH-hhhHhhHhhhhHHHHHHHhhccCccccchhhHHHHHHHHHHHhhChhhhhhhHHHHHH
Q 001487 534 SQ-EHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVME 593 (1069)
Q Consensus 534 ~~-~~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i~~ 593 (1069)
.. +.+.+.++.+.|.+++..... ...+|..|.-|+-.+...+|.+.+.||+.++-.
T Consensus 437 l~~EeL~~ll~diaP~~iqay~S~----SS~VRKtaVfCLVamv~~vG~~~mePhL~~Lt~ 493 (516)
T KOG2956|consen 437 LSAEELLNLLPDIAPCVIQAYDST----SSTVRKTAVFCLVAMVNRVGMEEMEPHLEQLTS 493 (516)
T ss_pred cCHHHHHHhhhhhhhHHHHHhcCc----hHHhhhhHHHhHHHHHHHHhHHhhhhHhhhccH
Confidence 65 456778899999998886553 345788899999999999998889999877543
No 95
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.18 E-value=0.0018 Score=72.71 Aligned_cols=430 Identities=16% Similarity=0.199 Sum_probs=242.6
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHc---cCCCHHHHHHHHHHHHhhcccCCCCcccCCCHHHH
Q 001487 25 ETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQ---RSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQ 101 (1069)
Q Consensus 25 ~~ll~~~~s~d~~~r~~A~~~L~~~~~~~p~~~~~~L~~il~---~~~~~~~R~~a~i~L~~~i~~~~~~~w~~l~~~~~ 101 (1069)
...+....+++...|..|-..+..+.- +....+++.-+. ++.++.+|..++++..++...+. +-...
T Consensus 89 nt~~kD~~d~np~iR~lAlrtm~~l~v---~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~-------~~~~~ 158 (734)
T KOG1061|consen 89 NTFLKDCEDPNPLIRALALRTMGCLRV---DKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDP-------DLVED 158 (734)
T ss_pred hhhhccCCCCCHHHHHHHhhceeeEee---hHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCCh-------hhccc
Confidence 344555677888899999887655432 123455555443 37789999999999999876541 11122
Q ss_pred HHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCC---CchhhHHHHHHhhcCCChhHHHHHHHHHHHhhhhhhhhc
Q 001487 102 SSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPEN---GWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTL 178 (1069)
Q Consensus 102 ~~i~~~ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~~~---~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~ 178 (1069)
..+...|-+.+.+ .++.+-..+..++..|.......+ .-+.++..+++.+.. ..--+-+.++..+..+.+..-
T Consensus 159 ~gl~~~L~~ll~D-~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~e---c~EW~qi~IL~~l~~y~p~d~ 234 (734)
T KOG1061|consen 159 SGLVDALKDLLSD-SNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNE---CTEWGQIFILDCLAEYVPKDS 234 (734)
T ss_pred cchhHHHHHHhcC-CCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHH---hhhhhHHHHHHHHHhcCCCCc
Confidence 3444455555565 577777777778888877543211 223344444444332 122234566777777766543
Q ss_pred chhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhCCcchHhHHHhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHH
Q 001487 179 TPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIEL 258 (1069)
Q Consensus 179 ~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~l~~l 258 (1069)
.....++..+...+.+. ++.|...+++.+...+..... .....+..+-|. +...+.. .++....++.-+.-+
T Consensus 235 -~ea~~i~~r~~p~Lqh~-n~avvlsavKv~l~~~~~~~~-~~~~~~~K~~~p----l~tlls~-~~e~qyvaLrNi~li 306 (734)
T KOG1061|consen 235 -REAEDICERLTPRLQHA-NSAVVLSAVKVILQLVKYLKQ-VNELLFKKVAPP----LVTLLSS-ESEIQYVALRNINLI 306 (734)
T ss_pred -hhHHHHHHHhhhhhccC-CcceEeehHHHHHHHHHHHHH-HHHHHHHHhccc----ceeeecc-cchhhHHHHhhHHHH
Confidence 24677888888888887 888889999999988887631 011112222222 2222222 336666777777777
Q ss_pred HccccHHHHHhHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcc
Q 001487 259 AGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPL 338 (1069)
Q Consensus 259 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~ 338 (1069)
+...|+.+...+..++ .+ -. .---++..-++++..++.. ..+.++++.+..+-.+.+
T Consensus 307 l~~~p~~~~~~~~~Ff---~k---yn-DPiYvK~eKleil~~la~~------------~nl~qvl~El~eYatevD---- 363 (734)
T KOG1061|consen 307 LQKRPEILKVEIKVFF---CK---YN-DPIYVKLEKLEILIELAND------------ANLAQVLAELKEYATEVD---- 363 (734)
T ss_pred HHhChHHHHhHhHeee---ee---cC-CchhhHHHHHHHHHHHhhH------------hHHHHHHHHHHHhhhhhC----
Confidence 7777775554332211 11 11 1223455556666666651 233445555554433221
Q ss_pred cccCCCCCccccCCcchhhHHHHHHHHHHHcCCccchHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHH
Q 001487 339 WHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQ 418 (1069)
Q Consensus 339 ~~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~ 418 (1069)
....+-+.++++.++..+. +. ...+..+.+.+.-..-.+...++..+..+...++. ..+.
T Consensus 364 -------------~~fvrkaIraig~~aik~e-~~--~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~----~~~~ 423 (734)
T KOG1061|consen 364 -------------VDFVRKAVRAIGRLAIKAE-QS--NDCVSILLELLETKVDYVVQEAIVVIRDILRKYPN----KYES 423 (734)
T ss_pred -------------HHHHHHHHHHhhhhhhhhh-hh--hhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCC----chhh
Confidence 1122345666777665553 22 33444444444422222233344444444444432 2244
Q ss_pred HHHHHHhhCCC-CChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccc
Q 001487 419 VLSMVLNSFRD-PHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEIL 497 (1069)
Q Consensus 419 i~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~ 497 (1069)
+++.+...+.. .+|..|.+-.|.+|++++.++. ...++..+++.+.+ ....||.....+.-.++-..++
T Consensus 424 vv~~l~~~~~sl~epeak~amiWilg~y~~~i~~------a~elL~~f~en~~d-E~~~Vql~LLta~ik~Fl~~p~--- 493 (734)
T KOG1061|consen 424 VVAILCENLDSLQEPEAKAALIWILGEYAERIEN------ALELLESFLENFKD-ETAEVQLELLTAAIKLFLKKPT--- 493 (734)
T ss_pred hhhhhcccccccCChHHHHHHHHHHhhhhhccCc------HHHHHHHHHhhccc-chHHHHHHHHHHHHHHHhcCCc---
Confidence 55555544443 5788999999999999987653 55788888999999 6788887776665554433322
Q ss_pred cCchHHHHHHHHHH-hhc-CChhHHHHHHHHHHHHH
Q 001487 498 TPYLDGIVSKLLVL-LQN-GKQMVQEGALTALASVA 531 (1069)
Q Consensus 498 ~~~l~~i~~~l~~~-l~~-~~~~v~~~al~~l~~l~ 531 (1069)
--+.+++.++.. .++ .++++|..++.-...+.
T Consensus 494 --~tq~~l~~vL~~~~~d~~~~dlrDr~l~Y~RlLs 527 (734)
T KOG1061|consen 494 --ETQELLQGVLPLATADTDNPDLRDRGLIYWRLLS 527 (734)
T ss_pred --cHHHHHHHHHhhhhccccChhhhhhHHHHHHHhh
Confidence 234445555443 333 35688888765544443
No 96
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=98.16 E-value=0.0023 Score=67.09 Aligned_cols=432 Identities=15% Similarity=0.140 Sum_probs=225.5
Q ss_pred hhhHHHHHHHHHHHHHhcccCC----CCchhhHHH--------HH-HhhcCCChhHHHHHHHHHHHhhhhhhh-------
Q 001487 117 AKSISKKLCDTVSELASNILPE----NGWPELLPF--------MF-QCVSSDSVKLQESAFLIFAQLSQYIGD------- 176 (1069)
Q Consensus 117 ~~~vr~~~~~~i~~i~~~~~~~----~~w~~ll~~--------l~-~~~~~~~~~~r~~al~~l~~l~~~~~~------- 176 (1069)
..++|..+..++....+. +++ +.|.-++|. ++ -.++++++..|..|+.++..+.+....
T Consensus 9 ~akvr~~al~~~~~~~~~-~~~~~~ygyw~~~~pd~~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~fls~a~~ 87 (728)
T KOG4535|consen 9 QAKVRQGALVCFLSTIKS-IEKKVLYGYWSAFIPDTPELGSPSLMTLTLKDPSPKTRACALQVLSAILEGSKQFLSVAED 87 (728)
T ss_pred HHHHHhhHHHHHHHHHhh-hhhhhhhceeeeecCCCCCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhhHHHHHHHhc
Confidence 345566665555555442 121 467655542 22 235678889999999999988764321
Q ss_pred ----hcch-------hHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhCCcchHhHHHhhHHHHHHHHHHHHhCCCh
Q 001487 177 ----TLTP-------HLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNE 245 (1069)
Q Consensus 177 ----~~~~-------~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~ 245 (1069)
.|.+ .+..+...++-.+..+..+.+-...++|+..+++..+- ...-..++..+++.+...+.+.|+
T Consensus 88 ~~~~~ftpf~v~~a~si~~~~r~l~~~l~~e~~~~~~tq~~kcla~lv~~~p~---~~l~~~~~~~~~~~ik~~i~~~d~ 164 (728)
T KOG4535|consen 88 TSDHAFTPFSVMIACSIRELHRCLLLALVAESSSQTVTQIIKCLANLVSNAPY---DRLKLSLLTKVWNQIKPYIRHKDV 164 (728)
T ss_pred cCCcCCCchHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCch---HHHHHHHHHHHHHHHHHHhhcCCC
Confidence 1332 23445555555555544778888999999999987531 122235666788888888888999
Q ss_pred HHHHHHHHHHHHHHccccHH--HH--------------HhHH--HHH---------------------------HHHHHH
Q 001487 246 ATAQEALELLIELAGTEPRF--LR--------------RQLV--DVV---------------------------GSMLQI 280 (1069)
Q Consensus 246 ~~~~~~~~~l~~l~~~~~~~--~~--------------~~~~--~l~---------------------------~~l~~~ 280 (1069)
.++..++..+..++.+.... +. +|.. +.. ..+..+
T Consensus 165 ~v~vs~l~~~~~~v~t~~~~pei~~~~~~~~s~~n~~~~h~s~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~i~~~~~i 244 (728)
T KOG4535|consen 165 NVRVSSLTLLGAIVSTHAPLPEVQLLLQQPCSSSNSATPHLSPPDWWKKLPAGPSLEETSVSSPKGSSEPCWLIRLCISI 244 (728)
T ss_pred ChhhHHHHHHHHHHhcCCCCHHHHHHhcCCCccccccCCCCCChHHHHhcCCCchhhhhccCCccCCCCCcceeeeeeee
Confidence 99999999998888754210 00 0000 000 000000
Q ss_pred -----------------hcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCC
Q 001487 281 -----------------AEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAE 343 (1069)
Q Consensus 281 -----------------~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~ 343 (1069)
++.--....+|..+++.+..++.. .++. .-+.-++...+...+.+.
T Consensus 245 ~~~~~~~s~~~~~~~~~~~~~~~ps~~rle~~qvl~~~a~~----~~~~---~~~~~~l~RvI~~~~~~~---------- 307 (728)
T KOG4535|consen 245 VVLPKEDSCSGSDAGSAAGSTYEPSPMRLEALQVLTLLARY----FSMT---QAYLMELGRVICKCMGEA---------- 307 (728)
T ss_pred eecCCccccchhhHHhhhcCccCCchhHHHHHHHHHHHHHH----HHHH---HHHHHHHHHHHHccCCCC----------
Confidence 000001122455555555555552 1111 112222222222222211
Q ss_pred CCCccccCCcchhhHHHHHHHHHHHcC----CccchHHHH-H-HHH---------HhhcCCChHHHHHHHHHHHHHHhhc
Q 001487 344 TEDEDAGESSNYSVGQECLDRLAIALG----GNTIVPVAS-E-QLP---------AYLAAPEWQKHHAALIALAQIAEGC 408 (1069)
Q Consensus 344 ~e~ed~~~~~~~~~a~~~l~~l~~~~~----~~~~~~~l~-~-~l~---------~~l~~~~~~~r~aal~~l~~l~~~~ 408 (1069)
....|..+..+++.+...++ |+..-..+. . +-. ....+..+..+.+++.++..+....
T Consensus 308 -------~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~ 380 (728)
T KOG4535|consen 308 -------DPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTMMLNGPLPRALYDSEHPTLQASACDALSSILPEA 380 (728)
T ss_pred -------ChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHHHccCCChhhhhhhcCCCchhHHHHHHhhcCchh
Confidence 12234445556655544332 111110000 0 000 1111222333445555555554322
Q ss_pred HHHHHHhHHHHHHHHHhhCCC-CChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHH
Q 001487 409 AKVMVKNLEQVLSMVLNSFRD-PHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLN 487 (1069)
Q Consensus 409 ~~~~~~~~~~i~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~ 487 (1069)
...+...-....+.+..+-.| ++..+|.+|.++++.+.-+-+-.....+.......++..+.| +.-.+|..+.++++.
T Consensus 381 f~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d-~~ln~r~Kaawtlgn 459 (728)
T KOG4535|consen 381 FSNLPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLED-KSLNVRAKAAWSLGN 459 (728)
T ss_pred hcCCCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhh-HhHhHHHHHHHHhhh
Confidence 221212222344555555554 455678888888887765543333234566677777788888 778899999999999
Q ss_pred hhhcCCcc------cccCchHHHHHHHHHHhh---cCChhHHHHHHHHHHHHHHhhHhhhHhhHhhhhHHHHHHHh-hcc
Q 001487 488 FSENCTPE------ILTPYLDGIVSKLLVLLQ---NGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILV-NAT 557 (1069)
Q Consensus 488 l~~~~~~~------~~~~~l~~i~~~l~~~l~---~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~-~~~ 557 (1069)
+.+.+-.. .-..+...++..+..... ..+.+|+.++.+++|++......-..+-+..+++.=...+. ...
T Consensus 460 ITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~ 539 (728)
T KOG4535|consen 460 ITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVL 539 (728)
T ss_pred hHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhccccee
Confidence 87754221 111233334444444332 23568999999999999887665444444444332222211 112
Q ss_pred CccccchhhHHHHHHHHHHH
Q 001487 558 DKSNRMLRAKSMECISLVGM 577 (1069)
Q Consensus 558 ~~~~~~lr~~a~~~l~~l~~ 577 (1069)
.+....+|-.+..++|.+.+
T Consensus 540 ~~~~~kV~WNaCya~gNLfk 559 (728)
T KOG4535|consen 540 TEAAMKVRWNACYAMGNLFK 559 (728)
T ss_pred cccccccchHHHHHHHHhhc
Confidence 23345677777777777654
No 97
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=0.0023 Score=72.13 Aligned_cols=157 Identities=15% Similarity=0.143 Sum_probs=114.7
Q ss_pred HHHHHHHHHhhCCCC-ChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCc
Q 001487 416 LEQVLSMVLNSFRDP-HPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTP 494 (1069)
Q Consensus 416 ~~~i~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~ 494 (1069)
++.++|.|+..|+++ ++.+...||+||..+++.++.....-.-...+|.++..|..-..-+|.+.+..+|..+....+.
T Consensus 209 v~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~ 288 (1051)
T KOG0168|consen 209 VKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPK 288 (1051)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccH
Confidence 467899999999875 7889999999999999999877632334468888888877645678999999999999887765
Q ss_pred ccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhHhhhHhhHhhhhHHHHHHHhhccCccccchhhHHHHHHHH
Q 001487 495 EILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISL 574 (1069)
Q Consensus 495 ~~~~~~l~~i~~~l~~~l~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~ 574 (1069)
..+..- -+..++..++--+..++..|+...++++..+..+--.|+-..+|.|..+|+..++ ..-..+.-|+..
T Consensus 289 AiL~AG---~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~ealPlL~~lLs~~D~----k~ies~~ic~~r 361 (1051)
T KOG0168|consen 289 AILQAG---ALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVMEALPLLTPLLSYQDK----KPIESVCICLTR 361 (1051)
T ss_pred HHHhcc---cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhhccc----hhHHHHHHHHHH
Confidence 443221 1233344444445678889999999999998876566788889999999877432 223334557777
Q ss_pred HHHhh
Q 001487 575 VGMAV 579 (1069)
Q Consensus 575 l~~~~ 579 (1069)
++...
T Consensus 362 i~d~f 366 (1051)
T KOG0168|consen 362 IADGF 366 (1051)
T ss_pred HHHhc
Confidence 77544
No 98
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=0.0047 Score=69.70 Aligned_cols=372 Identities=17% Similarity=0.245 Sum_probs=204.7
Q ss_pred hHHHHHHhhcCC-ChhHHHHHHHHHHHhhhhh--hh--hcc-hhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhC
Q 001487 144 LLPFMFQCVSSD-SVKLQESAFLIFAQLSQYI--GD--TLT-PHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLT 217 (1069)
Q Consensus 144 ll~~l~~~~~~~-~~~~r~~al~~l~~l~~~~--~~--~~~-~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~ 217 (1069)
=+..|++.+++. ++.. .+..+..+|+.. +. .+. --++.++|.+...|+++.+.++...|++||..+.+.++
T Consensus 168 k~kkLL~gL~~~~Des~---Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP 244 (1051)
T KOG0168|consen 168 KAKKLLQGLQAESDESQ---QLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLP 244 (1051)
T ss_pred HHHHHHHhccccCChHH---HHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhcc
Confidence 355666666654 5544 344555555532 21 121 14788999999999998789999999999999999876
Q ss_pred CcchHhHHH--hhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHccccHHHHH--hHHHHHHHHHHHhcCCCcchHHHHH
Q 001487 218 SSADRDRFQ--DLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRR--QLVDVVGSMLQIAEAESLEEGTRHL 293 (1069)
Q Consensus 218 ~~~~~~~~~--~~~~~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~l~~~l~~~~~~~~~~~~~r~~ 293 (1069)
.. ..... ..+|-+++.|... +--++.+.+++++-.+.+.++..+-. .+..++.+ +.++ ...+.+.
T Consensus 245 ~S--~a~vV~~~aIPvl~~kL~~I---eyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~Lsy-lDFF-----Si~aQR~ 313 (1051)
T KOG0168|consen 245 RS--SAIVVDEHAIPVLLEKLLTI---EYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSY-LDFF-----SIHAQRV 313 (1051)
T ss_pred ch--hheeecccchHHHHHhhhhh---hhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHH-HHHH-----HHHHHHH
Confidence 42 11122 2567777766642 35688999999999998888765432 12122221 1111 2345667
Q ss_pred HHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCcchhhHHHHHHHHHHHcCCc-
Q 001487 294 AIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGN- 372 (1069)
Q Consensus 294 a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~- 372 (1069)
|+.....+|+. .+ .+-..|+-..+|.|.+.+.+.+.. ......-|+.+++..+...
T Consensus 314 AlaiaaN~Cks---i~---sd~f~~v~ealPlL~~lLs~~D~k-----------------~ies~~ic~~ri~d~f~h~~ 370 (1051)
T KOG0168|consen 314 ALAIAANCCKS---IR---SDEFHFVMEALPLLTPLLSYQDKK-----------------PIESVCICLTRIADGFQHGP 370 (1051)
T ss_pred HHHHHHHHHhc---CC---CccchHHHHHHHHHHHHHhhccch-----------------hHHHHHHHHHHHHHhcccCh
Confidence 77777777773 21 233468888899998888775432 1223334555554433210
Q ss_pred c-----chHHHHHHHHHhhcCC----ChHHHHHHHHHHHHHHhhcHHHHHHhH----HHHHHHHHhhCC-CCC-----hh
Q 001487 373 T-----IVPVASEQLPAYLAAP----EWQKHHAALIALAQIAEGCAKVMVKNL----EQVLSMVLNSFR-DPH-----PR 433 (1069)
Q Consensus 373 ~-----~~~~l~~~l~~~l~~~----~~~~r~aal~~l~~l~~~~~~~~~~~~----~~i~~~l~~~l~-d~~-----~~ 433 (1069)
. ..+-++..+.+++.-. +-....+.+..+..++.+++..+...+ ..++..++..-. ..+ +.
T Consensus 371 ~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~nas~~~~l 450 (1051)
T KOG0168|consen 371 DKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSANASLHELL 450 (1051)
T ss_pred HHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCcCccccccccc
Confidence 1 1112333333333311 223344455555555555553222211 111111111100 000 00
Q ss_pred HH--HHHHH---------------------------------------------------HHHHhHh-------------
Q 001487 434 VR--WAAIN---------------------------------------------------AIGQLST------------- 447 (1069)
Q Consensus 434 vr--~~a~~---------------------------------------------------~l~~l~~------------- 447 (1069)
.| ..-+. +..++.+
T Consensus 451 ~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~~~~~~~~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~~t~~~~~ 530 (1051)
T KOG0168|consen 451 SRSPNELYELTSLIIELLPCLPVEGIFAVDCSLIYEIVNLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDTGTSRKQQ 530 (1051)
T ss_pred ccCcHHHHHHHHHHheeecCCcccceeehhhhhhcccccccccccccCccccccccccchhhhhhhhhhccCcccchhhh
Confidence 00 00000 0011111
Q ss_pred ------------hhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchH--HHHHHHHHHhh
Q 001487 448 ------------DLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLD--GIVSKLLVLLQ 513 (1069)
Q Consensus 448 ------------~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~--~i~~~l~~~l~ 513 (1069)
.-+|+....+...++|.+++...+..++.||..+..+|..++-..+.+.+...+. .+-..+-..+.
T Consensus 531 dkl~~~~r~~~l~nqpel~q~F~~~llpVLveVYsSsA~~~VR~kcL~Ailrlvy~s~seli~slLk~~~vSS~lAG~ls 610 (1051)
T KOG0168|consen 531 DKLNGSAREGLLKNQPELLQSFGKDLLPVLVEVYSSSANPDVRYKCLSAILRLVYFSNSELIGSLLKNTNVSSHLAGMLS 610 (1051)
T ss_pred hhcCCchhhhhhhcCHHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHhhCCHHHHHHHHhcchHHHHHHhhhh
Confidence 0023344567788999999988876789999999999999877665443322222 12233444555
Q ss_pred cCChhHHHHHHHHHHHHHHhhHhhhHhhH--hhhhHHHHHH
Q 001487 514 NGKQMVQEGALTALASVADSSQEHFQKYY--DAVMPFLKAI 552 (1069)
Q Consensus 514 ~~~~~v~~~al~~l~~l~~~~~~~~~~~~--~~i~~~l~~~ 552 (1069)
..+..+.-.|+...-.+.+..++.|.+++ +.++-.+.++
T Consensus 611 skD~~vlVgALQvAEiLmeKlpd~F~~~F~REGV~~~v~~L 651 (1051)
T KOG0168|consen 611 SKDLTVLVGALQVAEILMEKLPDTFSPSFRREGVFHAVKQL 651 (1051)
T ss_pred cCCCeeEeehHHHHHHHHHHhHHHhhhhHhhhhHHHHHHHH
Confidence 66677777788887788888888877765 3344444444
No 99
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.12 E-value=0.031 Score=63.04 Aligned_cols=290 Identities=18% Similarity=0.192 Sum_probs=171.3
Q ss_pred hHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhCCcchHhHHHhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHc
Q 001487 181 HLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAG 260 (1069)
Q Consensus 181 ~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~ 260 (1069)
....+.+.+-..+.+. ...|...|.+++..+-...+ . .+.| -++.+..++.++....|-+++..|.+++.
T Consensus 242 ~~s~~~~fl~s~l~~K-~emV~~EaArai~~l~~~~~-----r---~l~p-avs~Lq~flssp~~~lRfaAvRtLnkvAm 311 (865)
T KOG1078|consen 242 ADSPLFPFLESCLRHK-SEMVIYEAARAIVSLPNTNS-----R---ELAP-AVSVLQLFLSSPKVALRFAAVRTLNKVAM 311 (865)
T ss_pred chhhHHHHHHHHHhch-hHHHHHHHHHHHhhccccCH-----h---hcch-HHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 4556777777888876 77888888887776654431 1 1222 55666666778888999999999999998
Q ss_pred cccHHHHHhHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccc
Q 001487 261 TEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWH 340 (1069)
Q Consensus 261 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~ 340 (1069)
.+|....---.++-+. . .+.+..+...|+..+..-.. ..-+..++..+-..+.+.+++
T Consensus 312 ~~P~~v~~cN~elE~l----I--td~NrsIat~AITtLLKTG~------------e~sv~rLm~qI~~fv~disDe---- 369 (865)
T KOG1078|consen 312 KHPQAVTVCNLDLESL----I--TDSNRSIATLAITTLLKTGT------------ESSVDRLMKQISSFVSDISDE---- 369 (865)
T ss_pred hCCccccccchhHHhh----h--cccccchhHHHHHHHHHhcc------------hhHHHHHHHHHHHHHHhcccc----
Confidence 8876543221121111 1 12344555556555443222 112333444433444443321
Q ss_pred cCCCCCccccCCcchhhHHHHHHHHHHHcCCccchHHHHHHHHHhhcC-CChHHHHHHHHHHHHHHhhcHHHHHHhHHHH
Q 001487 341 SAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAA-PEWQKHHAALIALAQIAEGCAKVMVKNLEQV 419 (1069)
Q Consensus 341 ~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~-~~~~~r~aal~~l~~l~~~~~~~~~~~~~~i 419 (1069)
-..+..+++..++..++. -...+++++...+.+ ...+.+.+.+.++..+++..++.-..-+..+
T Consensus 370 -------------FKivvvdai~sLc~~fp~--k~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~~L~~L 434 (865)
T KOG1078|consen 370 -------------FKIVVVDAIRSLCLKFPR--KHTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKERGLEHL 434 (865)
T ss_pred -------------ceEEeHHHHHHHHhhccH--HHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhhHHHHHH
Confidence 123455677777776652 233466777666654 4567788888888888876665444444444
Q ss_pred HHHHHhhCCCCChhHHHHHHHHHHHhHhhhchhHH-hhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCccccc
Q 001487 420 LSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQ-NQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILT 498 (1069)
Q Consensus 420 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~-~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~ 498 (1069)
+.++..+ ..+..+...|..+.+..+.... ..|...+ .+.+-- .+..||.+|..++..|. .+...
T Consensus 435 CefIEDc------e~~~i~~rILhlLG~EgP~a~~Pskyir~i----yNRviL-En~ivRaaAv~alaKfg--~~~~~-- 499 (865)
T KOG1078|consen 435 CEFIEDC------EFTQIAVRILHLLGKEGPKAPNPSKYIRFI----YNRVIL-ENAIVRAAAVSALAKFG--AQDVV-- 499 (865)
T ss_pred HHHHHhc------cchHHHHHHHHHHhccCCCCCCcchhhHHH----hhhhhh-hhhhhHHHHHHHHHHHh--cCCCC--
Confidence 4444332 2344555666666655442220 2233333 333333 46889999999999998 22222
Q ss_pred CchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHh
Q 001487 499 PYLDGIVSKLLVLLQNGKQMVQEGALTALASVADS 533 (1069)
Q Consensus 499 ~~l~~i~~~l~~~l~~~~~~v~~~al~~l~~l~~~ 533 (1069)
-.+.+...+..++.+.+.++|+.|-..+..+-..
T Consensus 500 -l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~~~ 533 (865)
T KOG1078|consen 500 -LLPSILVLLKRCLNDSDDEVRDRATFYLKNLEEK 533 (865)
T ss_pred -ccccHHHHHHHHhcCchHHHHHHHHHHHHHhhhh
Confidence 3345566677789999999999998887777633
No 100
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=98.11 E-value=0.014 Score=67.93 Aligned_cols=373 Identities=15% Similarity=0.161 Sum_probs=199.0
Q ss_pred hhhHHHHHHHHHHHHHhcccCCC--CchhhHHHHHHhhcCCChhHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHhhc
Q 001487 117 AKSISKKLCDTVSELASNILPEN--GWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLT 194 (1069)
Q Consensus 117 ~~~vr~~~~~~i~~i~~~~~~~~--~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~ 194 (1069)
+..+| .+..++..++...-... .-..+++.|..++.+++......++.+|..++-.....-.-.-..+++.+.+.+.
T Consensus 263 eqLlr-v~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~ 341 (708)
T PF05804_consen 263 EQLLR-VAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLP 341 (708)
T ss_pred HHHHH-HHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhc
Confidence 44444 44456666665211000 1256788999999988888888888888877754322211123457788888888
Q ss_pred CCCChHHHHHHHHHHHHHHHhhCCcchHhHH--HhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHcccc--HHHHHhH
Q 001487 195 NSNNPDVKIAALNAVINFIQCLTSSADRDRF--QDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEP--RFLRRQL 270 (1069)
Q Consensus 195 ~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~--~~~~~~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~--~~~~~~~ 270 (1069)
++ +..++..++++|.++...-. .+..+ .+++|.++..+ . ++..+..++.+|-.+..... ..|. +
T Consensus 342 s~-~~~l~~~aLrlL~NLSfd~~---~R~~mV~~GlIPkLv~LL----~--d~~~~~val~iLy~LS~dd~~r~~f~-~- 409 (708)
T PF05804_consen 342 SE-NEDLVNVALRLLFNLSFDPE---LRSQMVSLGLIPKLVELL----K--DPNFREVALKILYNLSMDDEARSMFA-Y- 409 (708)
T ss_pred CC-CHHHHHHHHHHHHHhCcCHH---HHHHHHHCCCcHHHHHHh----C--CCchHHHHHHHHHHhccCHhhHHHHh-h-
Confidence 87 88899999999988765321 12222 24556555443 3 34455667777766654321 1111 1
Q ss_pred HHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCcccc
Q 001487 271 VDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAG 350 (1069)
Q Consensus 271 ~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~e~ed~~ 350 (1069)
.+.++.+++.+... .++.+...++.++..++...++...+.+ ..-++.++.......+
T Consensus 410 TdcIp~L~~~Ll~~-~~~~v~~eliaL~iNLa~~~rnaqlm~~------g~gL~~L~~ra~~~~D--------------- 467 (708)
T PF05804_consen 410 TDCIPQLMQMLLEN-SEEEVQLELIALLINLALNKRNAQLMCE------GNGLQSLMKRALKTRD--------------- 467 (708)
T ss_pred cchHHHHHHHHHhC-CCccccHHHHHHHHHHhcCHHHHHHHHh------cCcHHHHHHHHHhccc---------------
Confidence 13445555443222 2344444455555566553222211111 1223333333211110
Q ss_pred CCcchhhHHHHHHHHHHHcCC-c-cchHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhc-H-HHHHHhHH--HHHHHHH
Q 001487 351 ESSNYSVGQECLDRLAIALGG-N-TIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGC-A-KVMVKNLE--QVLSMVL 424 (1069)
Q Consensus 351 ~~~~~~~a~~~l~~l~~~~~~-~-~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~-~-~~~~~~~~--~i~~~l~ 424 (1069)
....+++..++.+-|+ + .+.+.+.+.+ ..+.+.+ .-+..+.++|.++.-. + ..+...+. .++|.+.
T Consensus 468 -----~lLlKlIRNiS~h~~~~k~~f~~~i~~L~-~~v~~~~--~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~ 539 (708)
T PF05804_consen 468 -----PLLLKLIRNISQHDGPLKELFVDFIGDLA-KIVSSGD--SEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLK 539 (708)
T ss_pred -----HHHHHHHHHHHhcCchHHHHHHHHHHHHH-HHhhcCC--cHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHH
Confidence 1334566666655432 1 1222222222 2333332 2345566666665432 1 12333333 4677777
Q ss_pred hhCCCC--ChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCC-CChhHHHHHHHHHHHhhhcCCcc-cccCc
Q 001487 425 NSFRDP--HPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDF-QNPRVQAHAASAVLNFSENCTPE-ILTPY 500 (1069)
Q Consensus 425 ~~l~d~--~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~-~~~~v~~~a~~al~~l~~~~~~~-~~~~~ 500 (1069)
..|... .+.+.-.++..+|.++..-.... .-.-..+++.++..|+.. .+.+.-...+.++.+++.+-... .+. .
T Consensus 540 ~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~-lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll-~ 617 (708)
T PF05804_consen 540 DLLKPGASEDDLLLEVVILLGTLASDPECAP-LLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETREVLL-K 617 (708)
T ss_pred HHhCCCCCChHHHHHHHHHHHHHHCCHHHHH-HHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHH-h
Confidence 777533 34566667778887775321111 112346777777777652 23455567778888877663221 111 1
Q ss_pred hHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhh
Q 001487 501 LDGIVSKLLVLLQNGKQMVQEGALTALASVADSS 534 (1069)
Q Consensus 501 l~~i~~~l~~~l~~~~~~v~~~al~~l~~l~~~~ 534 (1069)
-..+...++.++++.+..+|..+=.++..++..-
T Consensus 618 ~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d 651 (708)
T PF05804_consen 618 ETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYD 651 (708)
T ss_pred ccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhC
Confidence 1357788899999999999988877777777643
No 101
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.09 E-value=0.032 Score=62.42 Aligned_cols=146 Identities=16% Similarity=0.206 Sum_probs=93.7
Q ss_pred cchHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhC-------CCCChhHHHHHHHHHHHh
Q 001487 373 TIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSF-------RDPHPRVRWAAINAIGQL 445 (1069)
Q Consensus 373 ~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~i~~~l~~~l-------~d~~~~vr~~a~~~l~~l 445 (1069)
.++..+.--+...+++++..+|.-++...-.++.. ..+.+++.++-..+ +|.+..-|+.-.+++..+
T Consensus 313 ~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvss------rNvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~c 386 (948)
T KOG1058|consen 313 KILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSS------RNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHAC 386 (948)
T ss_pred HHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhh------ccHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHH
Confidence 44444444556678899999998887766655543 23444554444433 345667788888888887
Q ss_pred HhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhc-CChhHHHHHH
Q 001487 446 STDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQN-GKQMVQEGAL 524 (1069)
Q Consensus 446 ~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~i~~~l~~~l~~-~~~~v~~~al 524 (1069)
+-.++ .+...+++.++..+.| .++........++...++.++. .-..++..++..+.. .+.++-..++
T Consensus 387 av~Fp-----~~aatvV~~ll~fisD-~N~~aas~vl~FvrE~iek~p~-----Lr~~ii~~l~~~~~~irS~ki~rgal 455 (948)
T KOG1058|consen 387 AVKFP-----EVAATVVSLLLDFISD-SNEAAASDVLMFVREAIEKFPN-----LRASIIEKLLETFPQIRSSKICRGAL 455 (948)
T ss_pred hhcCh-----HHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHHhCch-----HHHHHHHHHHHhhhhhcccccchhHH
Confidence 76553 5678999999999999 7777666666666666665542 112344444444332 3455666788
Q ss_pred HHHHHHHHhhH
Q 001487 525 TALASVADSSQ 535 (1069)
Q Consensus 525 ~~l~~l~~~~~ 535 (1069)
+.+|..+....
T Consensus 456 wi~GeYce~~~ 466 (948)
T KOG1058|consen 456 WILGEYCEGLS 466 (948)
T ss_pred HHHHHHHhhhH
Confidence 88887776544
No 102
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=98.07 E-value=0.038 Score=61.91 Aligned_cols=187 Identities=14% Similarity=0.134 Sum_probs=113.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhchhhhHHHHHhhhhhhhc-CCCC----------HHHHHHHHHHHHHHHhHh---hhhhhh
Q 001487 854 EEVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWG-KDKT----------AEERRIAICIFDDVAEQC---REAALK 919 (1069)
Q Consensus 854 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~-~~~~----------~~~r~~a~~~l~~l~~~~---~~~~~~ 919 (1069)
+.++..+..++..++|.+...+.|+++.++..+-+.+. .-.+ .+.....+.++|-++... .+.-..
T Consensus 549 e~Vr~RawYLF~RfVKlLkkqlvpfie~iln~iqdlL~~~vtt~N~~s~~lt~fddqlyIfEtiGviI~l~n~paE~qaa 628 (980)
T KOG2021|consen 549 ENVRLRAWYLFTRFVKLLKKQLVPFIEEILNKIQDLLHIKVTTINAQSDNLTIFDDQLYIFETIGVIITLNNSPAELQAA 628 (980)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCCCcCccccccccccccceeeecceEEEeCCCCCHHHHHH
Confidence 45677788888889999998888998887777766652 1000 011122334444443221 111111
Q ss_pred hhHh---------HHHHH-HhhccCCCh----hHHHhhhHHHHHHHhhcCCCc--------hHHHHHHHHHHHHhhcCCC
Q 001487 920 YYET---------YLPFL-LEACNDENQ----DVRQAAVYGLGVCAEFGGSVV--------KPLVGEALSRLNVVIRHPN 977 (1069)
Q Consensus 920 ~~~~---------l~~~l-l~~l~~~~~----~vr~~a~~~lg~l~~~~~~~~--------~~~~~~~l~~L~~~l~~~~ 977 (1069)
|... ++... ....+|.+. .-+.+++.++|.++..-.... ...+.++++.+...+..+.
T Consensus 629 y~~~litpl~~~~~igl~~a~lasde~~pv~Ia~c~~~lmaig~lakgf~~rlvt~~qvg~~~vf~~~ldvil~~ls~f~ 708 (980)
T KOG2021|consen 629 YANTLITPLILDQIIGLLFAQLASDEASPVVIAECHHILMAIGTLAKGFHIRLVTENQVGNMVVFSNILDVILVTLSFFN 708 (980)
T ss_pred HHhcccChHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHhhcccccCcchhcccHHHHHHHHHHHHHHHHhhcc
Confidence 2222 22111 122233332 335667788999988665322 1235667777777776654
Q ss_pred CCChhhhhhHHHHHHHHHHHHhhcCCCC-C-HhhHHHHHHhhCCCCCcHHHHHHHHHHHHHHHhhcCCcccCc
Q 001487 978 ALQPENLMAYDNAVSALGKICQFHRDSI-D-AAQVVPAWLNCLPIKGDLIEAKIVHEQLCSMVERSDSDLLGP 1048 (1069)
Q Consensus 978 ~~~~~~~~~~~~~~~~l~~i~~~~~~~~-~-~~~~~~~~l~~lp~~~d~~~~~~~~~~l~~l~~~~~~~~~~~ 1048 (1069)
. ...+|+.+-..++||+...+..+ | +++.+..+|+. .|..|-...+..+..++.+++.++.+-
T Consensus 709 k----~E~iRsavrft~hRmI~~lg~~vlPfipklie~lL~s----~d~kEmvdfl~flsQLihkfk~~~~~i 773 (980)
T KOG2021|consen 709 K----FENIRSAVRFTFHRMIPILGNKVLPFIPKLIELLLSS----TDLKEMVDFLGFLSQLIHKFKTDCYQI 773 (980)
T ss_pred c----cchhHHHHHHHHHHHHHhcchhhhcchHHHHHHHHhc----CCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 35789999999999999877654 3 55555555554 455677778888999999998887775
No 103
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=0.019 Score=57.50 Aligned_cols=351 Identities=16% Similarity=0.165 Sum_probs=184.6
Q ss_pred ChhHHHH---HHHHHHHhhhhhhhhcchhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhCCcchHhHHHhhHHHH
Q 001487 156 SVKLQES---AFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLM 232 (1069)
Q Consensus 156 ~~~~r~~---al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~ 232 (1069)
+.+.|+. +..+|..+.+.... ....+++.+.+..+|..+ +..|+..+++.++.+++....+.-.+...-.-..+
T Consensus 53 NenhrekttlcVscLERLfkakeg--ahlapnlmpdLQrGLiad-dasVKiLackqigcilEdcDtnaVseillvvNaei 129 (524)
T KOG4413|consen 53 NENHREKTTLCVSCLERLFKAKEG--AHLAPNLMPDLQRGLIAD-DASVKILACKQIGCILEDCDTNAVSEILLVVNAEI 129 (524)
T ss_pred cccccchhhhHHHHHHHHHhhccc--hhhchhhhHHHHhcccCC-cchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhH
Confidence 3456666 45555555554211 124667888889999987 88999999999999988763211111111011246
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHccccHHHHHhHH-HHHHHHH-HHhcCCCcchHHHHHHHHHHHHHHHhhhccch
Q 001487 233 MRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLV-DVVGSML-QIAEAESLEEGTRHLAIEFVITLAEARERAPG 310 (1069)
Q Consensus 233 l~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~l~~~l~-~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~ 310 (1069)
++.+..++...+.++.+++.+.+..+... +..+...++ .+.+-+- .-+.. ..++-.|...++++..+... .|.
T Consensus 130 lklildcIggeddeVAkAAiesikrialf-paaleaiFeSellDdlhlrnlaa-kcndiaRvRVleLIieifSi---Spe 204 (524)
T KOG4413|consen 130 LKLILDCIGGEDDEVAKAAIESIKRIALF-PAALEAIFESELLDDLHLRNLAA-KCNDIARVRVLELIIEIFSI---SPE 204 (524)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHHhc-HHHHHHhcccccCChHHHhHHHh-hhhhHHHHHHHHHHHHHHhc---CHH
Confidence 66777788888999999999999887652 222221111 0000000 00000 12344566666666666553 221
Q ss_pred hhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCcchhhHHHHHHHHHHHcCCccchH--HHHHHHHHhhc-
Q 001487 311 MMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVP--VASEQLPAYLA- 387 (1069)
Q Consensus 311 ~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~--~l~~~l~~~l~- 387 (1069)
..... --..++..+..-|...+|. -......+....++..-.+.++++ .++..+.+.+.
T Consensus 205 sanec--kkSGLldlLeaElkGteDt----------------LVianciElvteLaeteHgreflaQeglIdlicnIIsG 266 (524)
T KOG4413|consen 205 SANEC--KKSGLLDLLEAELKGTEDT----------------LVIANCIELVTELAETEHGREFLAQEGLIDLICNIISG 266 (524)
T ss_pred HHhHh--hhhhHHHHHHHHhcCCcce----------------eehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhC
Confidence 11110 1123455554444332211 111112223333333222234443 35566666665
Q ss_pred -CCChHHHHHHHHHHHHHHh------hcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhHhhhch-hHHhhhhh
Q 001487 388 -APEWQKHHAALIALAQIAE------GCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGP-DLQNQFHP 459 (1069)
Q Consensus 388 -~~~~~~r~aal~~l~~l~~------~~~~~~~~~~~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~-~~~~~~~~ 459 (1069)
+.++..+.-++..++.+.. ..++.+-..+...+...++.....+|....+|..++|.+...... ......-+
T Consensus 267 adsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTgp 346 (524)
T KOG4413|consen 267 ADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGP 346 (524)
T ss_pred CCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCC
Confidence 4566666666666665543 233334444555556666777778888999999999998865532 12112223
Q ss_pred hhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCC--cccccC----------chHH--------HHHHHHHHhhcCChhH
Q 001487 460 QVLPALAGAMDDFQNPRVQAHAASAVLNFSENCT--PEILTP----------YLDG--------IVSKLLVLLQNGKQMV 519 (1069)
Q Consensus 460 ~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~--~~~~~~----------~l~~--------i~~~l~~~l~~~~~~v 519 (1069)
.-...++...-+.+...-+..++.+|..+..... ++.+.. +++. -+..+...++.+.+++
T Consensus 347 paaehllarafdqnahakqeaaihaLaaIagelrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilqQpfpEi 426 (524)
T KOG4413|consen 347 PAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQPFPEI 426 (524)
T ss_pred hHHHHHHHHHhcccccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcCCChhh
Confidence 3333444433331223345677777777765432 111111 0110 1233445566678888
Q ss_pred HHHHHHHHHHHHH
Q 001487 520 QEGALTALASVAD 532 (1069)
Q Consensus 520 ~~~al~~l~~l~~ 532 (1069)
+-.++.++..++.
T Consensus 427 hcAalktfTAiaa 439 (524)
T KOG4413|consen 427 HCAALKTFTAIAA 439 (524)
T ss_pred HHHHHHHHHHHHc
Confidence 8888888887764
No 104
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=98.04 E-value=3.4e-05 Score=72.79 Aligned_cols=128 Identities=22% Similarity=0.331 Sum_probs=95.8
Q ss_pred hhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCCChhHHHHHHHHHHHhhhhhhh----------------hcchh
Q 001487 118 KSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGD----------------TLTPH 181 (1069)
Q Consensus 118 ~~vr~~~~~~i~~i~~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~----------------~~~~~ 181 (1069)
+.++++++.+++.++.+++| ..||++++.+.+.+++ ++......+.+|..+.+++.+ .+...
T Consensus 2 ~~i~~kl~~~l~~i~~~~~P-~~Wp~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~ 79 (148)
T PF08389_consen 2 PFIRNKLAQVLAEIAKRDWP-QQWPDFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSN 79 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-TTSTTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHCh-hhCchHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHH
Confidence 46899999999999999999 7899999999999987 477788899999999887653 12335
Q ss_pred HHHHHHHHHHhhcCCCC---hHHHHHHHHHHHHHHHhhCCcchHhHHHhhHHHHHHHHHHHHhCCChHHHHHHHHHH
Q 001487 182 LKHLHAVFLNCLTNSNN---PDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELL 255 (1069)
Q Consensus 182 ~~~l~~~l~~~l~~~~~---~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~l 255 (1069)
.+.+++.+.+.+....+ ..+...+++++.+++.+.+ .+.+.. ..+++.+++.++ +++.+..|++||
T Consensus 80 ~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~----~~~i~~--~~~l~~~~~~l~--~~~~~~~A~~cl 148 (148)
T PF08389_consen 80 SPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIP----IELIIN--SNLLNLIFQLLQ--SPELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-----HHHHHS--SSHHHHHHHHTT--SCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCC----HHHhcc--HHHHHHHHHHcC--CHHHHHHHHHhC
Confidence 56677777777765422 7889999999999999863 222222 135666666664 455688888875
No 105
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=97.98 E-value=0.0051 Score=64.68 Aligned_cols=308 Identities=15% Similarity=0.144 Sum_probs=162.8
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhHhhhchhHH-hhhhhh-----hHHHHH
Q 001487 393 KHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQ-NQFHPQ-----VLPALA 466 (1069)
Q Consensus 393 ~r~aal~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~-~~~~~~-----il~~l~ 466 (1069)
+|..++..|..++.+.+ ....++-++...+...+.+..|.++..+..++..+......+.. ...-.. +.-...
T Consensus 271 ~rle~~qvl~~~a~~~~-~~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~~l 349 (728)
T KOG4535|consen 271 MRLEALQVLTLLARYFS-MTQAYLMELGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTMML 349 (728)
T ss_pred hHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHHHc
Confidence 45556666666655433 23346667778888899999999999998888877655431110 001111 111111
Q ss_pred -hh----ccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHh-hcCChhHHHHHHHHHHHHHHhhHhhh-H
Q 001487 467 -GA----MDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLL-QNGKQMVQEGALTALASVADSSQEHF-Q 539 (1069)
Q Consensus 467 -~~----l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~i~~~l~~~l-~~~~~~v~~~al~~l~~l~~~~~~~~-~ 539 (1069)
+. .-|...+..+.++|.++.++....... +..--.+..+.+.... ++.+.-++..|+.+++.++-+-+-.. .
T Consensus 350 ~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~-lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~ 428 (728)
T KOG4535|consen 350 NGPLPRALYDSEHPTLQASACDALSSILPEAFSN-LPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDV 428 (728)
T ss_pred cCCChhhhhhhcCCCchhHHHHHHhhcCchhhcC-CCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhH
Confidence 01 111123445677888887775432211 1111122333333333 33445688888888877665543221 1
Q ss_pred hhHhhhhHHHHHHHhhccCccccchhhHHHHHHHHHHHhhChhh--hhhhHHHHHHHHH----HHhcCCCCCCCchhhHH
Q 001487 540 KYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDK--FRDDAKQVMEVLM----SLQGSQMETDDPTTSYM 613 (1069)
Q Consensus 540 ~~~~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~--~~~~~~~i~~~l~----~l~~~~~~~~~~~~~~~ 613 (1069)
.+.......+...+.+ .....|.+++-++|.|..++-... .......+...++ ..-+..--+++.++..+
T Consensus 429 ~fv~~aa~~il~sl~d----~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~na 504 (728)
T KOG4535|consen 429 IFVADAANAILMSLED----KSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNA 504 (728)
T ss_pred HHHHHHHHHHHHHhhh----HhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHH
Confidence 2333333333333322 123457777778888877653111 1112333333322 21111111335578888
Q ss_pred HHHHHHHHHHhcCCcccchhhhhHHHHHhcccCCCccccCCCCccccccCCCcccchhhcCCceeeeccchHHHHHHHHH
Q 001487 614 LQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACN 693 (1069)
Q Consensus 614 ~~~~~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~a~~ 693 (1069)
+.+++++.+.+..-..+-+..+++.-...+.. .....+.+..|=.||.
T Consensus 505 vraLgnllQvlq~i~~~~~~e~~~~~~~~l~~--------------------------------~v~~~~~~kV~WNaCy 552 (728)
T KOG4535|consen 505 VRALGNLLQFLQPIEKPTFAEIIEESIQALIS--------------------------------TVLTEAAMKVRWNACY 552 (728)
T ss_pred HHHHhhHHHHHHHhhhccHHHHHHHHHHhccc--------------------------------ceecccccccchHHHH
Confidence 88888887665433333332222222111100 0012233445667899
Q ss_pred HHHHHHHH--hhhcccccHHHHHHHHhhccCCcCChHHHHHHHHhHH
Q 001487 694 MLCCYADE--LKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMP 738 (1069)
Q Consensus 694 ~l~~l~~~--~~~~~~p~~~~~~~~l~~~l~~~~~~~ir~~a~~~l~ 738 (1069)
++|.+.++ .+-.-.|+.+.+++.+..++.+..|-.||..|+.+|.
T Consensus 553 a~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~ 599 (728)
T KOG4535|consen 553 AMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALS 599 (728)
T ss_pred HHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhc
Confidence 99999886 2344567888888888888777667788888877754
No 106
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.97 E-value=0.07 Score=61.80 Aligned_cols=137 Identities=15% Similarity=0.158 Sum_probs=102.8
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc--CCCHHHHHHHHHHHHhhcccCCCCcccCCCHHH
Q 001487 23 PFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR--SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHT 100 (1069)
Q Consensus 23 ~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~~p~~~~~~L~~il~~--~~~~~~R~~a~i~L~~~i~~~~~~~w~~l~~~~ 100 (1069)
=+..++.++.+-|.+.++--.-+|..+.+.+|+..+..+-.+..+ ++|+.+|.+|...+..+=. ++.
T Consensus 56 Lf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lLavNti~kDl~d~N~~iR~~AlR~ls~l~~-----------~el 124 (757)
T COG5096 56 LFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALLAVNTIQKDLQDPNEEIRGFALRTLSLLRV-----------KEL 124 (757)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHhcCh-----------HHH
Confidence 344567777888999999999999999887887654444444444 8899999999988865422 335
Q ss_pred HHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCchh--hHHHHHHhhcCCChhHHHHHHHHHHHhhhh
Q 001487 101 QSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPE--LLPFMFQCVSSDSVKLQESAFLIFAQLSQY 173 (1069)
Q Consensus 101 ~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~~~~w~~--ll~~l~~~~~~~~~~~r~~al~~l~~l~~~ 173 (1069)
...+...+.+.+.+ +.+.||+.++.++..+.+.+ .+-.++ +...+...+.+++|.+...|+..|..+...
T Consensus 125 ~~~~~~~ik~~l~d-~~ayVRk~Aalav~kly~ld--~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 125 LGNIIDPIKKLLTD-PHAYVRKTAALAVAKLYRLD--KDLYHELGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHHHHHHHHccC-CcHHHHHHHHHHHHHHHhcC--HhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 56666777777776 78899999999999998743 234444 456666677789999999999999888766
No 107
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=97.97 E-value=0.029 Score=62.03 Aligned_cols=146 Identities=16% Similarity=0.177 Sum_probs=107.8
Q ss_pred CCChHHHHHHHHHHHHHHhhcHHHHHH-hHHHHHHHHHhhCCCCChhHHHHHHHHHHHhHhhhchhHHhhh-hhhhHHHH
Q 001487 388 APEWQKHHAALIALAQIAEGCAKVMVK-NLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQF-HPQVLPAL 465 (1069)
Q Consensus 388 ~~~~~~r~aal~~l~~l~~~~~~~~~~-~~~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~~il~~l 465 (1069)
..+...+.||+.++-.++......-.. .-..+...+++.+.|++..|..++.-++..+.-.+++.- ..+ -...+..+
T Consensus 388 ~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~k-skfl~~ngId~l 466 (678)
T KOG1293|consen 388 IKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLK-SKFLRNNGIDIL 466 (678)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHH-HHHHHcCcHHHH
Confidence 356778889999988877654432111 223567777788899999999999999999887776543 333 34788888
Q ss_pred HhhccCCCChhHHHHHHHHHHHhhhcCCcccc-cCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhH
Q 001487 466 AGAMDDFQNPRVQAHAASAVLNFSENCTPEIL-TPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQ 535 (1069)
Q Consensus 466 ~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~-~~~l~~i~~~l~~~l~~~~~~v~~~al~~l~~l~~~~~ 535 (1069)
.+.+.+ +.+.+|..+.|+|..+.=+++.... .++-.--.+.+....+++++.|+++++..+.++.....
T Consensus 467 ~s~~~~-~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~ 536 (678)
T KOG1293|consen 467 ESMLTD-PDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSR 536 (678)
T ss_pred HHHhcC-CCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcH
Confidence 899999 8999999999999998766654322 23333345566677889999999999999999876543
No 108
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=0.017 Score=57.77 Aligned_cols=289 Identities=15% Similarity=0.195 Sum_probs=168.9
Q ss_pred HHHHHHHHHhcccCCCCchhhHHHHHHhhcCCChhHHHHHHHHHHHhhhhhhhh-cch----hHHHHHHHHHHhhcCCCC
Q 001487 124 LCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDT-LTP----HLKHLHAVFLNCLTNSNN 198 (1069)
Q Consensus 124 ~~~~i~~i~~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~-~~~----~~~~l~~~l~~~l~~~~~ 198 (1069)
...++..+.+...+.+.-|+++|.+...+..++..++..++..++.+.+..... ..+ .-..+++.++.++..+ +
T Consensus 63 cVscLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgge-d 141 (524)
T KOG4413|consen 63 CVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGE-D 141 (524)
T ss_pred HHHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCC-c
Confidence 456777777766666778999999999999999999999999999999876522 221 2356888888888887 8
Q ss_pred hHHHHHHHHHHHHHHHhhCCcchHhHHHhhHH-------HHHHHHHHHHhCCChHHHHHHHHHHHHHHccccHHHHHhH-
Q 001487 199 PDVKIAALNAVINFIQCLTSSADRDRFQDLLP-------LMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQL- 270 (1069)
Q Consensus 199 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~-------~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~- 270 (1069)
.+|-++|++.+..+...- ..+..++| ++.+.-. .-+.-.|..+++++.++....+......-
T Consensus 142 deVAkAAiesikrialfp------aaleaiFeSellDdlhlrnlaa----kcndiaRvRVleLIieifSiSpesaneckk 211 (524)
T KOG4413|consen 142 DEVAKAAIESIKRIALFP------AALEAIFESELLDDLHLRNLAA----KCNDIARVRVLELIIEIFSISPESANECKK 211 (524)
T ss_pred HHHHHHHHHHHHHHHhcH------HHHHHhcccccCChHHHhHHHh----hhhhHHHHHHHHHHHHHHhcCHHHHhHhhh
Confidence 899999999998877542 11111111 1111111 11335577778888887776654432211
Q ss_pred HHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhH--HHHHHHHHHhhcCCCCCcccccCCCCCcc
Q 001487 271 VDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFI--NRLFAILMSMLLDIEDDPLWHSAETEDED 348 (1069)
Q Consensus 271 ~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~~~~~~~~e~ed 348 (1069)
..++..+..-+.- ..+.-++..++++...+++... -..|+ ..++..+...+...+.++
T Consensus 212 SGLldlLeaElkG-teDtLVianciElvteLaeteH--------greflaQeglIdlicnIIsGadsdP----------- 271 (524)
T KOG4413|consen 212 SGLLDLLEAELKG-TEDTLVIANCIELVTELAETEH--------GREFLAQEGLIDLICNIISGADSDP----------- 271 (524)
T ss_pred hhHHHHHHHHhcC-CcceeehhhHHHHHHHHHHHhh--------hhhhcchhhHHHHHHHHhhCCCCCc-----------
Confidence 2455555443321 1234467888999999988421 12233 335666655554433221
Q ss_pred ccCCcchhhHHHHHHHHHHHcCCc--------cchH---HHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHH--HHHHh
Q 001487 349 AGESSNYSVGQECLDRLAIALGGN--------TIVP---VASEQLPAYLAAPEWQKHHAALIALAQIAEGCAK--VMVKN 415 (1069)
Q Consensus 349 ~~~~~~~~~a~~~l~~l~~~~~~~--------~~~~---~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~--~~~~~ 415 (1069)
+. ....+.-+.+.+|.. .+.. ..+.-..+.+...++....+|+.++|.+...... .+.+.
T Consensus 272 ------fe-kfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkT 344 (524)
T KOG4413|consen 272 ------FE-KFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKT 344 (524)
T ss_pred ------HH-HHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhcc
Confidence 11 111222223333321 1222 2222233455677888999999999988765432 22222
Q ss_pred HHHHHHHHHhhCCCCCh-hHHHHHHHHHHHhHhhhc
Q 001487 416 LEQVLSMVLNSFRDPHP-RVRWAAINAIGQLSTDLG 450 (1069)
Q Consensus 416 ~~~i~~~l~~~l~d~~~-~vr~~a~~~l~~l~~~~~ 450 (1069)
-+.-...++....|.+. .-+.++..||..++..+.
T Consensus 345 gppaaehllarafdqnahakqeaaihaLaaIagelr 380 (524)
T KOG4413|consen 345 GPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGELR 380 (524)
T ss_pred CChHHHHHHHHHhcccccchHHHHHHHHHHhhcccc
Confidence 23333344444444443 335677888888876553
No 109
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=97.97 E-value=2.2e-05 Score=70.96 Aligned_cols=111 Identities=23% Similarity=0.251 Sum_probs=88.0
Q ss_pred HHHHHHhhCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhh-hhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccc
Q 001487 419 VLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHP-QVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEIL 497 (1069)
Q Consensus 419 i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~-~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~ 497 (1069)
+++.+.+.+.+.++.+|..++++++.++...+... ..... .+++.+.+.+.+ ++++++..++++|.+++...+....
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~-~~~~~~~~i~~l~~~l~~-~~~~v~~~a~~~L~~l~~~~~~~~~ 85 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNI-QAVVEAGGLPALVQLLKS-EDEEVVKAALWALRNLAAGPEDNKL 85 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHH-HHHHHCCChHHHHHHHhC-CCHHHHHHHHHHHHHHccCcHHHHH
Confidence 56778888889999999999999999997643333 33344 899999999999 8999999999999999876542111
Q ss_pred cCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHH
Q 001487 498 TPYLDGIVSKLLVLLQNGKQMVQEGALTALASVA 531 (1069)
Q Consensus 498 ~~~l~~i~~~l~~~l~~~~~~v~~~al~~l~~l~ 531 (1069)
...-..+++.+.+.+++.+..+++.++.++..++
T Consensus 86 ~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 86 IVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 1122347888999999999999999999998875
No 110
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=97.96 E-value=0.00027 Score=74.09 Aligned_cols=170 Identities=15% Similarity=0.129 Sum_probs=129.7
Q ss_pred chHHHHHHHHHhhcC-CChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHH-HHHhHhhhch
Q 001487 374 IVPVASEQLPAYLAA-PEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINA-IGQLSTDLGP 451 (1069)
Q Consensus 374 ~~~~l~~~l~~~l~~-~~~~~r~aal~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~d~~~~vr~~a~~~-l~~l~~~~~~ 451 (1069)
.+..++-.+.+.+.+ .+...|.-|+..|+.+....+..+.....-.+..++..-.|.++.|-..|..+ +..++.+.+-
T Consensus 326 ~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~ 405 (516)
T KOG2956|consen 326 HFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPL 405 (516)
T ss_pred HHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCch
Confidence 344555666667776 78889999999999999998887777777777778888888888776666554 4455554442
Q ss_pred hHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHH
Q 001487 452 DLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVA 531 (1069)
Q Consensus 452 ~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~i~~~l~~~l~~~~~~v~~~al~~l~~l~ 531 (1069)
..+..+.|.++. .| ...-..++..+..+++.++.+.+...++.+.|.+++..++.+..||..++.|+-.+.
T Consensus 406 ----~~I~~i~~~Ilt--~D---~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv 476 (516)
T KOG2956|consen 406 ----QCIVNISPLILT--AD---EPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMV 476 (516)
T ss_pred ----hHHHHHhhHHhc--Cc---chHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHH
Confidence 334555665555 22 233356677889999999888888999999999999999999999999999999999
Q ss_pred HhhH-hhhHhhHhhhhHHHHHH
Q 001487 532 DSSQ-EHFQKYYDAVMPFLKAI 552 (1069)
Q Consensus 532 ~~~~-~~~~~~~~~i~~~l~~~ 552 (1069)
..+| +.+.||+.++-..-.++
T Consensus 477 ~~vG~~~mePhL~~Lt~sk~~L 498 (516)
T KOG2956|consen 477 NRVGMEEMEPHLEQLTSSKLNL 498 (516)
T ss_pred HHHhHHhhhhHhhhccHHHHHH
Confidence 9999 88999998765444433
No 111
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.94 E-value=0.057 Score=59.57 Aligned_cols=146 Identities=22% Similarity=0.244 Sum_probs=111.1
Q ss_pred hHHHHHHHHHhc-CCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHccCCCHHHHHHHHHHHHhhcccCCCCcccCCCHH
Q 001487 21 SAPFETLISHLM-STSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLH 99 (1069)
Q Consensus 21 ~~~l~~ll~~~~-s~d~~~r~~A~~~L~~~~~~~p~~~~~~L~~il~~~~~~~~R~~a~i~L~~~i~~~~~~~w~~l~~~ 99 (1069)
..+|+.+-+.++ +.|+..|.+||+.|.++.. +|+ ++..+..++..+..+--..+|+.+|-+.+..+ ..++-+
T Consensus 4 LaqLe~lCk~LY~s~D~~~R~~AE~~L~e~s~-spe-clskCqlll~~gs~pYs~mlAst~L~Klvs~~-----t~lpl~ 76 (1082)
T KOG1410|consen 4 LAQLESLCKDLYESTDPTARHRAEKALAELSE-SPE-CLSKCQLLLERGSYPYSQMLASTCLMKLVSRK-----TPLPLE 76 (1082)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHcc-CHH-HHHHHHHHHHcCCCchHHHHHHHHHHHHHcCC-----CCCcHH
Confidence 356777777776 5689999999999999998 677 56777778888888999999999999999985 468999
Q ss_pred HHHHHHHHHHHHHhhc-c--hhhHHHHHHHHHHHHHhcccCCC-----CchhhHHHHHHhhcCCChhHHHHHHHHHHHhh
Q 001487 100 TQSSLKSMLLQSIQLE-S--AKSISKKLCDTVSELASNILPEN-----GWPELLPFMFQCVSSDSVKLQESAFLIFAQLS 171 (1069)
Q Consensus 100 ~~~~i~~~ll~~l~~e-~--~~~vr~~~~~~i~~i~~~~~~~~-----~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~ 171 (1069)
++-.|++-+++.+..- | .+-+-..+++.++++.+..|-.. .+.+.+..+...++.++.+....++.+|..+.
T Consensus 77 qrldir~Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~v~~~~kfl~~~~ve~~~igv~iLsqLv 156 (1082)
T KOG1410|consen 77 QRLDIRNYILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFRDPVDDVTKFLQMDNVEHCIIGVQILSQLV 156 (1082)
T ss_pred HHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchhhhhHHHHHHHhccCchHHHHHHHHHHHHHH
Confidence 9999999999999862 2 34567778888888888644321 23466666666666665556566666666665
Q ss_pred hh
Q 001487 172 QY 173 (1069)
Q Consensus 172 ~~ 173 (1069)
.+
T Consensus 157 qe 158 (1082)
T KOG1410|consen 157 QE 158 (1082)
T ss_pred HH
Confidence 54
No 112
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=0.068 Score=59.93 Aligned_cols=499 Identities=15% Similarity=0.171 Sum_probs=246.4
Q ss_pred HHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCC--ChhHHHHH-HHHHHHhhhhhhhh-
Q 001487 102 SSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSD--SVKLQESA-FLIFAQLSQYIGDT- 177 (1069)
Q Consensus 102 ~~i~~~ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~~~~w~~ll~~l~~~~~~~--~~~~r~~a-l~~l~~l~~~~~~~- 177 (1069)
+++++.+.+.+.. +..+|..+-..+-.+ ..-|.++-.+.+.+.+. +.++|..| +..=..+...+...
T Consensus 3 ~ellqcf~qTlda--da~~rt~AE~~Lk~l-------eKqPgFv~all~i~s~de~~lnvklsAaIYfKNkI~rsWss~~ 73 (970)
T COG5656 3 EELLQCFLQTLDA--DAGKRTIAEAMLKDL-------EKQPGFVMALLHICSKDEGDLNVKLSAAIYFKNKIIRSWSSKR 73 (970)
T ss_pred HHHHHHHHHHhcc--CcchhhHHHHHHHHh-------hcCCcHHHHHHHHHhhccCCchhhHHHHHHHhhhhhhhhhhcc
Confidence 4566677777764 677777665554433 24577777777776543 44555444 44434555544321
Q ss_pred -------cch-hHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhCCcchHhHHHhhHHHHHHHHHHHHhCCChHHHH
Q 001487 178 -------LTP-HLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQ 249 (1069)
Q Consensus 178 -------~~~-~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~ 249 (1069)
-.+ .-..+++.++..+.. ++.+-..++.++...+-.-.. . .+.++ +......++.+.+.....
T Consensus 74 d~~i~~Dek~e~K~~lienil~v~l~--sp~~tr~~l~ail~~I~seD~---p---s~~wg-l~p~~~nll~s~ea~~vy 144 (970)
T COG5656 74 DDGIKADEKSEAKKYLIENILDVFLY--SPEVTRTALNAILVNIFSEDK---P---SDLWG-LFPKAANLLRSSEANHVY 144 (970)
T ss_pred cCCCCCcccHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHHHhccccC---c---hhhcc-cchHHHHhhcccchhHHH
Confidence 111 112244444444333 334444566666555533211 1 12222 333344445567778888
Q ss_pred HHHHHHHHHHcccc-------HHHHHhHHHHHHHHHHHhcCCCc--ch---HHHHHHHHHHHHHHHhhhccchhhhcchh
Q 001487 250 EALELLIELAGTEP-------RFLRRQLVDVVGSMLQIAEAESL--EE---GTRHLAIEFVITLAEARERAPGMMRKLPQ 317 (1069)
Q Consensus 250 ~~~~~l~~l~~~~~-------~~~~~~~~~l~~~l~~~~~~~~~--~~---~~r~~a~~~l~~l~~~~~~~~~~~~~~~~ 317 (1069)
.++.|+.++.+.+. ..+.+....+++.+.++.++-.. +. ++-...++.....+-. .-|...... .
T Consensus 145 ~gLlcl~elfkayRwk~ndeq~di~~li~alfpile~~g~nl~s~~ny~s~e~l~LILk~fKsvcy~--~LP~~lsa~-e 221 (970)
T COG5656 145 TGLLCLEELFKAYRWKYNDEQVDILMLITALFPILEKVGGNLESQGNYGSVETLMLILKSFKSVCYY--SLPDFLSAI-E 221 (970)
T ss_pred HHHHHHHHHHHHHhhhccchHhhHHHHHHHhhHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHh--hCCHHHccc-h
Confidence 89999999987653 22344455666666665433211 12 1112222222222221 112111111 1
Q ss_pred hHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCcch----hhHHHHHHHHHHHcCCc--------------cchHHH-
Q 001487 318 FINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNY----SVGQECLDRLAIALGGN--------------TIVPVA- 378 (1069)
Q Consensus 318 ~~~~l~~~l~~~l~~~~~~~~~~~~~~e~ed~~~~~~~----~~a~~~l~~l~~~~~~~--------------~~~~~l- 378 (1069)
.+...+...+..+..+-..+....+ .++. ..+.| +=|.--|.++...++.. .++|.+
T Consensus 222 ~f~sw~ql~l~i~qkplp~evlsld---pevR-s~~~wvKckKWa~ynLyR~fqRy~k~s~~~~y~~f~~~f~t~vp~il 297 (970)
T COG5656 222 TFSSWFQLSLRILQKPLPNEVLSLD---PEVR-SLSKWVKCKKWAAYNLYRSFQRYIKKSYKKSYLSFYITFMTRVPMIL 297 (970)
T ss_pred hhHHHHHHHHHHHcCCCCHHHhccC---hhhc-cccchhhhhHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHH
Confidence 1222333333334433211111110 0110 11111 11333444444333311 122222
Q ss_pred ---HHHHHHhhcCCChHHHHHHHHHHHHHHhhcHH------HHHHhHHHHHH-HHHhhC-----------CCCChhHH--
Q 001487 379 ---SEQLPAYLAAPEWQKHHAALIALAQIAEGCAK------VMVKNLEQVLS-MVLNSF-----------RDPHPRVR-- 435 (1069)
Q Consensus 379 ---~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~------~~~~~~~~i~~-~l~~~l-----------~d~~~~vr-- 435 (1069)
+..+..+-+.+=|-. ...+..++...+.|.+ .+.+|+.-++. .+++.+ .|+..-+|
T Consensus 298 ~tffkqie~wgqgqLWls-d~~LYfi~~Fve~cv~~d~tw~l~ePhlq~ii~~vIfPllc~see~eElfEnDp~eyirry 376 (970)
T COG5656 298 ATFFKQIEEWGQGQLWLS-DIELYFIDFFVELCVDADQTWRLMEPHLQYIISGVIFPLLCLSEEEEELFENDPDEYIRRY 376 (970)
T ss_pred HHHHHHHHHhhcCCeecc-hHHHHHHHHHHHHHhhhHhhHhhhccHHHHHHHhhhhhhcCCChhhHHHHhcCHHHHHHHh
Confidence 223333334443432 2356666666665542 45677765554 333433 23333333
Q ss_pred -----------HHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCC-------CChhHHHHHHHHHHHhhhcCCc-cc
Q 001487 436 -----------WAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDF-------QNPRVQAHAASAVLNFSENCTP-EI 496 (1069)
Q Consensus 436 -----------~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~-------~~~~v~~~a~~al~~l~~~~~~-~~ 496 (1069)
-+|+.++-.....-+ +..+..+++-+...+... .+++-.+.|...+.++...... +.
T Consensus 377 ~df~d~g~spdlaal~fl~~~~sKrk----e~TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp 452 (970)
T COG5656 377 YDFFDNGLSPDLAALFFLIISKSKRK----EETFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSP 452 (970)
T ss_pred cchhcCCCChhHHHHHHHHHHhcccc----hhhhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCch
Confidence 233444433333222 233666777666666210 1233345566666665552221 11
Q ss_pred ccCchH-HHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhHhhhHhhHhhhhHHHHHHHhhccCccccchhhHHHHHHHHH
Q 001487 497 LTPYLD-GIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLV 575 (1069)
Q Consensus 497 ~~~~l~-~i~~~l~~~l~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~l 575 (1069)
+...++ -+++.+.+.++++.--++.+++..++.+-.-.++. ..+.++.....+.+++ +..+++..|..++..+
T Consensus 453 ~an~me~fiv~hv~P~f~s~ygfL~Srace~is~~eeDfkd~--~ill~aye~t~ncl~n----n~lpv~ieAalAlq~f 526 (970)
T COG5656 453 AANVMEYFIVNHVIPAFRSNYGFLKSRACEFISTIEEDFKDN--GILLEAYENTHNCLKN----NHLPVMIEAALALQFF 526 (970)
T ss_pred HHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHHHHHhcccc--hHHHHHHHHHHHHHhc----CCcchhhhHHHHHHHH
Confidence 222222 35677777888888889999999999884333321 1344455555555554 3456777766666666
Q ss_pred HHhh-ChhhhhhhHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHHHhcCCcccchhhhhHHHHHh
Q 001487 576 GMAV-GKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQS 642 (1069)
Q Consensus 576 ~~~~-~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~ 642 (1069)
...- -.++|..+++.+|+-++.+.+. ++. | ..-.++..++..+.+++.||-+.++..+.+.
T Consensus 527 i~~~q~h~k~sahVp~tmekLLsLSn~-fei-D----~LS~vMe~fVe~fseELspfa~eLa~~Lv~q 588 (970)
T COG5656 527 IFNEQSHEKFSAHVPETMEKLLSLSNT-FEI-D----PLSMVMESFVEYFSEELSPFAPELAGSLVRQ 588 (970)
T ss_pred HhchhhhHHHHhhhhHHHHHHHHhccc-ccc-h----HHHHHHHHHHHHhHHhhchhHHHHHHHHHHH
Confidence 5532 1267889999999999887652 322 2 2334566777788888899988887777663
No 113
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.91 E-value=0.017 Score=63.59 Aligned_cols=292 Identities=17% Similarity=0.183 Sum_probs=166.1
Q ss_pred HHHHHhCCChHHHHHHHHHHHHHHccccHHHHHhHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHhhhccchhh-h-
Q 001487 236 LTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMM-R- 313 (1069)
Q Consensus 236 l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~-~- 313 (1069)
+.....+.|+.+|..|++.+..+.+. -.+.. .++....+.+ .|.++.+|..|++.+.-... ..|... +
T Consensus 203 l~~~~~~~D~~Vrt~A~eglL~L~eg--~kL~~---~~Y~~A~~~l--sD~~e~VR~aAvqlv~v~gn---~~p~~~e~e 272 (823)
T KOG2259|consen 203 LIYLEHDQDFRVRTHAVEGLLALSEG--FKLSK---ACYSRAVKHL--SDDYEDVRKAAVQLVSVWGN---RCPAPLERE 272 (823)
T ss_pred HHHHhcCCCcchHHHHHHHHHhhccc--ccccH---HHHHHHHHHh--cchHHHHHHHHHHHHHHHHh---cCCCcccch
Confidence 44555678999999999999888762 22211 2333344444 45678899999887766655 232110 0
Q ss_pred -cchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCcchhhHHHHHHHHHHHcCCccchHHHHHHHHHhhcCC--C
Q 001487 314 -KLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAP--E 390 (1069)
Q Consensus 314 -~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~--~ 390 (1069)
.-.......+..+...+.+. ++..+-.|.+.|+.+...- +. .+.+.+...+-+. -
T Consensus 273 ~~e~kl~D~aF~~vC~~v~D~-----------------sl~VRV~AaK~lG~~~~vS--ee---~i~QTLdKKlms~lRR 330 (823)
T KOG2259|consen 273 SEEEKLKDAAFSSVCRAVRDR-----------------SLSVRVEAAKALGEFEQVS--EE---IIQQTLDKKLMSRLRR 330 (823)
T ss_pred hhhhhhHHHHHHHHHHHHhcC-----------------ceeeeehHHHHhchHHHhH--HH---HHHHHHHHHHhhhhhh
Confidence 11123344444444443332 2223334555655543221 11 1222222222211 1
Q ss_pred hHH---HHHHHHHHHHHHhh-------cHHHHHHhHHHHH-----HHHHhhCCCCChhHHHHHHHHHHHhHhhhchhHHh
Q 001487 391 WQK---HHAALIALAQIAEG-------CAKVMVKNLEQVL-----SMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQN 455 (1069)
Q Consensus 391 ~~~---r~aal~~l~~l~~~-------~~~~~~~~~~~i~-----~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~ 455 (1069)
|+. |-..+..=|..+.| .++.....-..|+ ..++.+|.|+--.||.+|...++.++..-+
T Consensus 331 kr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP----- 405 (823)
T KOG2259|consen 331 KRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSP----- 405 (823)
T ss_pred hhhcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCC-----
Confidence 211 11122221211111 1111111112333 467788999999999999999999986532
Q ss_pred hhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhH
Q 001487 456 QFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQ 535 (1069)
Q Consensus 456 ~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~i~~~l~~~l~~~~~~v~~~al~~l~~l~~~~~ 535 (1069)
.+...-+..|+..++| ....||..|+.+|..+..+.. .-+..++.++..+.+.+.++|+.+-..++..-..-.
T Consensus 406 ~FA~~aldfLvDMfND-E~~~VRL~ai~aL~~Is~~l~------i~eeql~~il~~L~D~s~dvRe~l~elL~~~~~~d~ 478 (823)
T KOG2259|consen 406 GFAVRALDFLVDMFND-EIEVVRLKAIFALTMISVHLA------IREEQLRQILESLEDRSVDVREALRELLKNARVSDL 478 (823)
T ss_pred CcHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHhe------ecHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCcH
Confidence 3456778888899999 888999999999999987743 234556777888899999999888777665422111
Q ss_pred hhhHhhHhhhhHHHHHHHhhccCccccchhhHHHHHHHHHHHhhC
Q 001487 536 EHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVG 580 (1069)
Q Consensus 536 ~~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~ 580 (1069)
+ -+...+..+...+.....+ |...+.|++.+++.-+
T Consensus 479 ~----~i~m~v~~lL~~L~kyPqD-----rd~i~~cm~~iGqnH~ 514 (823)
T KOG2259|consen 479 E----CIDMCVAHLLKNLGKYPQD-----RDEILRCMGRIGQNHR 514 (823)
T ss_pred H----HHHHHHHHHHHHhhhCCCC-----cHHHHHHHHHHhccCh
Confidence 1 3344455555555543222 3446789998887665
No 114
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.91 E-value=1.9e-05 Score=58.96 Aligned_cols=55 Identities=40% Similarity=0.530 Sum_probs=49.3
Q ss_pred hhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHh
Q 001487 432 PRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNF 488 (1069)
Q Consensus 432 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l 488 (1069)
|.||.+|+++||.++...+... .++.+.+++.|...|+| +++.||.+|+++|+++
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~-~~~~~~~~~~L~~~L~d-~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELL-QPYLPELLPALIPLLQD-DDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHH-HHHHHHHHHHHHHHTTS-SSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHH-HHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHhcC
Confidence 6799999999999887777666 68999999999999999 8889999999999764
No 115
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.88 E-value=0.01 Score=63.25 Aligned_cols=278 Identities=17% Similarity=0.179 Sum_probs=158.3
Q ss_pred HHHHHHhcccCCCCc-----hhhHHHHHHhhcCCChhHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHhhcCCCChHH
Q 001487 127 TVSELASNILPENGW-----PELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDV 201 (1069)
Q Consensus 127 ~i~~i~~~~~~~~~w-----~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v 201 (1069)
.++.+++...+...| .+++..+.+-..+++...|..|+..|+......+.....+...++..+..+|-|+.+.+|
T Consensus 237 d~Af~ael~~~~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V 316 (533)
T KOG2032|consen 237 DIAFFAELKRPKELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEV 316 (533)
T ss_pred HHHHHHHHhCcccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHH
Confidence 445555544443333 234444555556788899999999999999988887778889999999888888778899
Q ss_pred HHHHHHHHHHHHHhhCCcchHhHHHhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHccccH----HHHHhHH-HHHHH
Q 001487 202 KIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPR----FLRRQLV-DVVGS 276 (1069)
Q Consensus 202 r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~----~~~~~~~-~l~~~ 276 (1069)
...++++|..+.....+. .+...+-.+.-.+..+..+.+++.|..++-+++.+....+. +|...+. ...++
T Consensus 317 ~leam~~Lt~v~~~~~~~----~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~l 392 (533)
T KOG2032|consen 317 QLEAMKCLTMVLEKASND----DLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPL 392 (533)
T ss_pred HHHHHHHHHHHHHhhhhc----chhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccc
Confidence 999999999888876421 12222222333455566678899999999988888764432 2332222 33333
Q ss_pred HHHHhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCcchh
Q 001487 277 MLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYS 356 (1069)
Q Consensus 277 l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~e~ed~~~~~~~~ 356 (1069)
++.+ .+ .+..+. .|+......+- |. +..+.+..+++...+. + ..
T Consensus 393 llhl-~d--~~p~va-~ACr~~~~~c~-----p~-------l~rke~~~~~q~~ld~-----------------~-~~-- 436 (533)
T KOG2032|consen 393 LLHL-QD--PNPYVA-RACRSELRTCY-----PN-------LVRKELYHLFQESLDT-----------------D-MA-- 436 (533)
T ss_pred eeee-CC--CChHHH-HHHHHHHHhcC-----ch-------hHHHHHHHHHhhhhHH-----------------h-HH--
Confidence 3332 22 233332 23443333222 11 1112222222110000 0 00
Q ss_pred hHHHHHHHHHHHcCCccchHHHHHHHH----HhhcCCCh-HHHHHHHHHHHHHHhhcHHHHHHh--HHHHHHHHHhhCCC
Q 001487 357 VGQECLDRLAIALGGNTIVPVASEQLP----AYLAAPEW-QKHHAALIALAQIAEGCAKVMVKN--LEQVLSMVLNSFRD 429 (1069)
Q Consensus 357 ~a~~~l~~l~~~~~~~~~~~~l~~~l~----~~l~~~~~-~~r~aal~~l~~l~~~~~~~~~~~--~~~i~~~l~~~l~d 429 (1069)
-........+..+ ..+.|.++-++. -++ +..| .+|.++...-+..........-++ ...+...+-...+|
T Consensus 437 ~~q~Fyn~~c~~L--~~i~~d~l~~~~t~~~~~f-~sswe~vr~aavl~t~~~vd~l~~~~c~~~d~~qL~~~ls~l~~d 513 (533)
T KOG2032|consen 437 RFQAFYNQWCIQL--NHIHPDILMLLLTEDQHIF-SSSWEQVREAAVLKTTRSVDSLVRAACSSADGLQLRSSLSTLWRD 513 (533)
T ss_pred HHHHHHHHHHHHH--hhhCHHHHHHHHHhchhhe-ecchHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHccC
Confidence 0111122222222 122232222222 233 4456 788888877777766555433332 23566677777889
Q ss_pred CChhHHHHHHHHHHHhHh
Q 001487 430 PHPRVRWAAINAIGQLST 447 (1069)
Q Consensus 430 ~~~~vr~~a~~~l~~l~~ 447 (1069)
+-|.++..|..+++.+..
T Consensus 514 p~pev~~~a~~al~~l~~ 531 (533)
T KOG2032|consen 514 PRPEVTDSARKALDLLSV 531 (533)
T ss_pred CCchhHHHHHHHhhhHhh
Confidence 999999999999988753
No 116
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.78 E-value=0.00076 Score=65.15 Aligned_cols=108 Identities=20% Similarity=0.303 Sum_probs=82.5
Q ss_pred ChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhc
Q 001487 390 EWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAM 469 (1069)
Q Consensus 390 ~~~~r~aal~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l 469 (1069)
++.+|-.++.++|.++...+. .++..++.+...|+|++|.||..|+.++..+...- + ...-..++..++..+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~----~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d---~-ik~k~~l~~~~l~~l 72 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPN----LVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILED---M-IKVKGQLFSRILKLL 72 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcH----HHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcC---c-eeehhhhhHHHHHHH
Confidence 477899999999998876654 44556777788999999999999999999987542 2 244566777788888
Q ss_pred cCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHH
Q 001487 470 DDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVS 506 (1069)
Q Consensus 470 ~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~i~~ 506 (1069)
.| +++.||..|..++..+.....+..+..+++.++.
T Consensus 73 ~D-~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~ 108 (178)
T PF12717_consen 73 VD-ENPEIRSLARSFFSELLKKRNPNIIYNNFPELIS 108 (178)
T ss_pred cC-CCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence 99 9999999999999998887555544344444433
No 117
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=97.77 E-value=0.0025 Score=57.93 Aligned_cols=154 Identities=29% Similarity=0.407 Sum_probs=106.9
Q ss_pred HHHHHHHHHHhhcc-hhhHHHHHHHHHHHHHhcc--cCCCCchhhHHHHHHhhcCCChhHHHHHHHHHHHhh-hhhhhhc
Q 001487 103 SLKSMLLQSIQLES-AKSISKKLCDTVSELASNI--LPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLS-QYIGDTL 178 (1069)
Q Consensus 103 ~i~~~ll~~l~~e~-~~~vr~~~~~~i~~i~~~~--~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~-~~~~~~~ 178 (1069)
+||..++..|..+. ....-+.++++++.++... .+.+.|++|...+..... .++ ..|+.++..+. ...++-+
T Consensus 3 eikplLIsCL~~q~~k~s~~KiL~~iVs~Va~~v~~~~~~~W~eL~d~Ils~~~-~e~---~kA~~IF~~L~~~l~~efl 78 (174)
T PF04510_consen 3 EIKPLLISCLTMQETKESDFKILRRIVSHVAYEVFDLQEGGWDELSDCILSLSE-NEP---VKAFHIFICLPMPLYGEFL 78 (174)
T ss_pred chHHHHHHHHHhhcccHhHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhhc-cch---HHHHHHHHhCCchhhhhHH
Confidence 46778888887653 3345556666666666644 367899999988887652 222 56888998888 4555667
Q ss_pred chhHHHHHHHHHHhhcCCCChHHH--HHHH-HHHHHHHHhhCCcchHhHHHhhHHHHHHHHHHHHhCCCh-HHHHHHHHH
Q 001487 179 TPHLKHLHAVFLNCLTNSNNPDVK--IAAL-NAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNE-ATAQEALEL 254 (1069)
Q Consensus 179 ~~~~~~l~~~l~~~l~~~~~~~vr--~~a~-~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~-~~~~~~~~~ 254 (1069)
.+.++.+++.+.+.|.++.+.++. ..|+ .++...+..++.....+.+.++++.+++.+.+.++.+.+ .....+++-
T Consensus 79 ~~~~~~L~~~~~~~L~~p~~~d~~~W~LAl~~a~~~~Iql~e~~~~~~~vk~L~~~mv~Sv~elV~~g~E~~~l~rgl~~ 158 (174)
T PF04510_consen 79 IPFMENLLPEISKVLLPPEEVDVEDWVLALTGAVCMAIQLLESSMRVDLVKELLPKMVKSVKELVERGMEVGFLRRGLRD 158 (174)
T ss_pred HHHHHHHHHHHHHHcCCchhccHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 788999999999999987434443 3344 333445555555555678889999999999998887766 666677776
Q ss_pred HHHHHc
Q 001487 255 LIELAG 260 (1069)
Q Consensus 255 l~~l~~ 260 (1069)
+..++.
T Consensus 159 ~e~~v~ 164 (174)
T PF04510_consen 159 FESFVS 164 (174)
T ss_pred HHHHHH
Confidence 666554
No 118
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=97.77 E-value=0.00071 Score=64.00 Aligned_cols=138 Identities=22% Similarity=0.289 Sum_probs=115.2
Q ss_pred HhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCC
Q 001487 414 KNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCT 493 (1069)
Q Consensus 414 ~~~~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~ 493 (1069)
..++.++..+...++++++.-|..++..++..++..+.+....+....+..+++.++....+.+...++.++..++....
T Consensus 21 ~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~ 100 (165)
T PF08167_consen 21 SALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIR 100 (165)
T ss_pred HHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 45667777888899999999999999999999998866665678889999999999884556788999999999987543
Q ss_pred ------cccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhHhhhHhhHhhhhHHHHHHH
Q 001487 494 ------PEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAIL 553 (1069)
Q Consensus 494 ------~~~~~~~l~~i~~~l~~~l~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~i~~~l~~~l 553 (1069)
.+...|.++.+++.+++.+++ ......++.++..+....+..|.||..++-..+...+
T Consensus 101 ~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~ll 164 (165)
T PF08167_consen 101 GKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTTFRPFANKIESALLSLL 164 (165)
T ss_pred CCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCccccchHHHHHHHHHHHh
Confidence 245678999999999999886 5677889999999999999999999988887776654
No 119
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.76 E-value=0.12 Score=57.73 Aligned_cols=317 Identities=14% Similarity=0.123 Sum_probs=158.3
Q ss_pred HHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCC--ChhHHHHHHHHHHHhhhhhhhhcc
Q 001487 102 SSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSD--SVKLQESAFLIFAQLSQYIGDTLT 179 (1069)
Q Consensus 102 ~~i~~~ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~~~~w~~ll~~l~~~~~~~--~~~~r~~al~~l~~l~~~~~~~~~ 179 (1069)
..+.+.+.+-|.+ .++.-...+.++|+.|...++.....+++- ..+.++ .+.+|..|..+|-.+.+..++.+.
T Consensus 110 klvin~iknDL~s-rn~~fv~LAL~~I~niG~re~~ea~~~DI~----KlLvS~~~~~~vkqkaALclL~L~r~spDl~~ 184 (938)
T KOG1077|consen 110 KLVINSIKNDLSS-RNPTFVCLALHCIANIGSREMAEAFADDIP----KLLVSGSSMDYVKQKAALCLLRLFRKSPDLVN 184 (938)
T ss_pred HHHHHHHHhhhhc-CCcHHHHHHHHHHHhhccHhHHHHhhhhhH----HHHhCCcchHHHHHHHHHHHHHHHhcCccccC
Confidence 3344444444444 455555666788888877655422223322 334333 346788888888888887666432
Q ss_pred hhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhCCcchHhHHHhhHHHHHHHHHHHHhCC-------------ChH
Q 001487 180 PHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNG-------------NEA 246 (1069)
Q Consensus 180 ~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~-------------~~~ 246 (1069)
.....+.+...|.|. +..|-.++...+..++... ++.+...+|.-+..+....... .|.
T Consensus 185 --~~~W~~riv~LL~D~-~~gv~ta~~sLi~~lvk~~-----p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PW 256 (938)
T KOG1077|consen 185 --PGEWAQRIVHLLDDQ-HMGVVTAATSLIEALVKKN-----PESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPW 256 (938)
T ss_pred --hhhHHHHHHHHhCcc-ccceeeehHHHHHHHHHcC-----CHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChH
Confidence 345666777788887 7777777877777777764 2445555666555555433221 122
Q ss_pred HHHHHHHHHHHHHccccHHHHHhHHHHHHHHHHHhcCCCcchHH----HHHH--HHHHHHHHHhhhccchhhhcchhhHH
Q 001487 247 TAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGT----RHLA--IEFVITLAEARERAPGMMRKLPQFIN 320 (1069)
Q Consensus 247 ~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~----r~~a--~~~l~~l~~~~~~~~~~~~~~~~~~~ 320 (1069)
.....+.+|...-.....-....+.++.+.++.-...+-...++ ...| ++.+.-+... ..-++.+.
T Consensus 257 L~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~--------D~e~~ll~ 328 (938)
T KOG1077|consen 257 LQVKLLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHL--------DSEPELLS 328 (938)
T ss_pred HHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHc--------CCcHHHHH
Confidence 22223332222110000111111222222222211110000111 1111 1111111110 01112333
Q ss_pred HHHHHHHHhhcCCCCCcccccCCCCCccccCCcchhhHHHHHHHHHHHcCCccchHHHHHHHHHhhc-CCChHHHHHHHH
Q 001487 321 RLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLA-APEWQKHHAALI 399 (1069)
Q Consensus 321 ~l~~~l~~~l~~~~~~~~~~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-~~~~~~r~aal~ 399 (1069)
+.+..|-+++... +.+.+..+.+.+..++..-...+.+..=...+...++ ..+..+|.-|+.
T Consensus 329 ~~~~~Lg~fls~r-----------------E~NiRYLaLEsm~~L~ss~~s~davK~h~d~Ii~sLkterDvSirrravD 391 (938)
T KOG1077|consen 329 RAVNQLGQFLSHR-----------------ETNIRYLALESMCKLASSEFSIDAVKKHQDTIINSLKTERDVSIRRRAVD 391 (938)
T ss_pred HHHHHHHHHhhcc-----------------cccchhhhHHHHHHHHhccchHHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 3333333333221 2233444555555544331111122222334444555 678899999999
Q ss_pred HHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHH
Q 001487 400 ALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLP 463 (1069)
Q Consensus 400 ~l~~l~~~~~~~~~~~~~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~ 463 (1069)
.|..+++. .....|+.-+++.|...++.+|+.-..=+.-+++.+..+. .-|.+.++.
T Consensus 392 LLY~mcD~------~Nak~IV~elLqYL~tAd~sireeivlKvAILaEKyAtDy-~WyVdviLq 448 (938)
T KOG1077|consen 392 LLYAMCDV------SNAKQIVAELLQYLETADYSIREEIVLKVAILAEKYATDY-SWYVDVILQ 448 (938)
T ss_pred HHHHHhch------hhHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCc-chhHHHHHH
Confidence 99998875 3456777888888888889999876666666677666555 345444444
No 120
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.72 E-value=0.00025 Score=59.60 Aligned_cols=86 Identities=28% Similarity=0.403 Sum_probs=67.3
Q ss_pred HHHHHhh-cCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhHhhhchhHHhhhh
Q 001487 380 EQLPAYL-AAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFH 458 (1069)
Q Consensus 380 ~~l~~~l-~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 458 (1069)
+.+.+.+ ++++|.+|..++.+++.+. -+..++.+...++|+++.||..|+++|+.+. .
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~-----------~ 60 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGELG----------DPEAIPALIELLKDEDPMVRRAAARALGRIG-----------D 60 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCCT----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH-----------H
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcC----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC-----------C
Confidence 4455566 7899999999999999432 2367888888899999999999999999873 2
Q ss_pred hhhHHHHHhhccCCCChhHHHHHHHHHH
Q 001487 459 PQVLPALAGAMDDFQNPRVQAHAASAVL 486 (1069)
Q Consensus 459 ~~il~~l~~~l~~~~~~~v~~~a~~al~ 486 (1069)
+..++.+.+.+.+.++..||..|..+|+
T Consensus 61 ~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 4577788888877456678999988874
No 121
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.71 E-value=0.00083 Score=64.87 Aligned_cols=135 Identities=15% Similarity=0.245 Sum_probs=97.3
Q ss_pred ChhHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhCCcchHhHHHhhHHHHHHH
Q 001487 156 SVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRT 235 (1069)
Q Consensus 156 ~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~ 235 (1069)
++.+|..++.+++.++..++. .++..++.+...|.|+ ++.||..|+.++..++..- +..+-+.++..
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~----~ve~~~~~l~~~L~D~-~~~VR~~al~~Ls~Li~~d--------~ik~k~~l~~~ 67 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPN----LVEPYLPNLYKCLRDE-DPLVRKTALLVLSHLILED--------MIKVKGQLFSR 67 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcH----HHHhHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHcC--------ceeehhhhhHH
Confidence 467899999999999988766 4666777888889998 9999999999999998752 11112234344
Q ss_pred HHHHHhCCChHHHHHHHHHHHHHHcc-ccHHHHHhHHHHHHHHHHHhcCC---CcchHHHHHHHHHHHHHHH
Q 001487 236 LTESLNNGNEATAQEALELLIELAGT-EPRFLRRQLVDVVGSMLQIAEAE---SLEEGTRHLAIEFVITLAE 303 (1069)
Q Consensus 236 l~~~l~~~~~~~~~~~~~~l~~l~~~-~~~~~~~~~~~l~~~l~~~~~~~---~~~~~~r~~a~~~l~~l~~ 303 (1069)
+..++.++++++|..|..+|.++... .+..+..++++++..+-.....+ ..+.+-|...+.++.....
T Consensus 68 ~l~~l~D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~ 139 (178)
T PF12717_consen 68 ILKLLVDENPEIRSLARSFFSELLKKRNPNIIYNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFID 139 (178)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcC
Confidence 45566789999999999999999987 67778777777776555432222 2344455666666665544
No 122
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=97.67 E-value=0.017 Score=59.16 Aligned_cols=247 Identities=13% Similarity=0.188 Sum_probs=157.1
Q ss_pred HHHHhhcCCChhHHHHHHHHHHHhhhhhhhh-cc-hhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhCCcchHhH
Q 001487 147 FMFQCVSSDSVKLQESAFLIFAQLSQYIGDT-LT-PHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDR 224 (1069)
Q Consensus 147 ~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~-~~-~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 224 (1069)
.|-..++++++..|..|+.+|..+.+..+.. +. ..+..++..+..-+.|. ..+ ..+++++..++..- . ...+
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~--~~~-~~~l~gl~~L~~~~-~-~~~~- 76 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDH--ACV-QPALKGLLALVKMK-N-FSPE- 76 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccH--hhH-HHHHHHHHHHHhCc-C-CChh-
Confidence 3556778899999999999999999988754 33 35777888888888653 344 44488888888432 1 1112
Q ss_pred HHhhHHHHHHHHHHHH--hCCChHHHHHHHHHHHHHHccccHHHHHhHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHH
Q 001487 225 FQDLLPLMMRTLTESL--NNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLA 302 (1069)
Q Consensus 225 ~~~~~~~~l~~l~~~l--~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~ 302 (1069)
....+++.+++.. +..-...|..+++++..+.+++...+...-..++..+++.++. +-|++--..+++++..+.
T Consensus 77 ---~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~g-EkDPRnLl~~F~l~~~i~ 152 (262)
T PF14500_consen 77 ---SAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDG-EKDPRNLLLSFKLLKVIL 152 (262)
T ss_pred ---hHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHH
Confidence 2334455444422 2234578999999999999988777766556777777776643 345665566777777776
Q ss_pred HhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCcchhh-HHHHHHHHHHHcC-CccchHHHHH
Q 001487 303 EARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSV-GQECLDRLAIALG-GNTIVPVASE 380 (1069)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~e~ed~~~~~~~~~-a~~~l~~l~~~~~-~~~~~~~l~~ 380 (1069)
.. .+ ..++.+.++..+.-+.--. +..... .++.+ +.+.-..+-..+. ...+.|..+|
T Consensus 153 ~~---~~-----~~~~~e~lFd~~~cYFPI~-----F~pp~~--------dp~~IT~edLk~~L~~cl~s~~~fa~~~~p 211 (262)
T PF14500_consen 153 QE---FD-----ISEFAEDLFDVFSCYFPIT-----FRPPPN--------DPYGITREDLKRALRNCLSSTPLFAPFAFP 211 (262)
T ss_pred Hh---cc-----cchhHHHHHHHhhheeeee-----eeCCCC--------CCCCCCHHHHHHHHHHHhcCcHhhHHHHHH
Confidence 63 11 2456677777766554211 000000 01111 1222222222222 2467788999
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHHHhhcH-HHHHHhHHHHHHHHH
Q 001487 381 QLPAYLAAPEWQKHHAALIALAQIAEGCA-KVMVKNLEQVLSMVL 424 (1069)
Q Consensus 381 ~l~~~l~~~~~~~r~aal~~l~~l~~~~~-~~~~~~~~~i~~~l~ 424 (1069)
.+.+.+.+....+|.-++..+...+...+ ..+.+|..+++..+-
T Consensus 212 ~LleKL~s~~~~~K~D~L~tL~~c~~~y~~~~~~~~~~~iw~~lk 256 (262)
T PF14500_consen 212 LLLEKLDSTSPSVKLDSLQTLKACIENYGADSLSPHWSTIWNALK 256 (262)
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988776544 467778777777654
No 123
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=97.65 E-value=0.00072 Score=63.05 Aligned_cols=96 Identities=20% Similarity=0.257 Sum_probs=81.9
Q ss_pred hhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHH---HHhh
Q 001487 458 HPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASV---ADSS 534 (1069)
Q Consensus 458 ~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~i~~~l~~~l~~~~~~v~~~al~~l~~l---~~~~ 534 (1069)
++.++|.++.+|.+ ....-+--|...+..+++..+.+.+.|.+++++..+...+++.++++...++.++..+ ...+
T Consensus 36 y~~~Lpif~dGL~E-t~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~v 114 (183)
T PF10274_consen 36 YHHYLPIFFDGLRE-TEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMV 114 (183)
T ss_pred hhhHHHHHHhhhhc-cCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhh
Confidence 56899999999998 5555667777888888887444567899999999999999999999999999999999 6678
Q ss_pred HhhhHhhHhhhhHHHHHHHh
Q 001487 535 QEHFQKYYDAVMPFLKAILV 554 (1069)
Q Consensus 535 ~~~~~~~~~~i~~~l~~~l~ 554 (1069)
|+.+.||+.+++|.+.-...
T Consensus 115 G~aLvPyyrqLLp~ln~f~~ 134 (183)
T PF10274_consen 115 GEALVPYYRQLLPVLNLFKN 134 (183)
T ss_pred hHHHHHHHHHHHHHHHHHHh
Confidence 89999999999999875443
No 124
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.65 E-value=0.0012 Score=65.63 Aligned_cols=149 Identities=19% Similarity=0.273 Sum_probs=121.2
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhHhhhchhHHhhh
Q 001487 378 ASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQF 457 (1069)
Q Consensus 378 l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 457 (1069)
.+......+.+.+|....-++..+..++...++.+...+..++-.+.+.+++....|-.+||.+++.+.+.+...+ ...
T Consensus 89 al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i-~~~ 167 (334)
T KOG2933|consen 89 ALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSI-DQE 167 (334)
T ss_pred HHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 3344445677899999999999999999999999999999999999999999999999999999999999887777 345
Q ss_pred hhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhH
Q 001487 458 HPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQ 535 (1069)
Q Consensus 458 ~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~i~~~l~~~l~~~~~~v~~~al~~l~~l~~~~~ 535 (1069)
++.++..|+..-.. .+.-||+.|-.+|..++.+..+. .+++.|..++++.++.+|..+..++...+...|
T Consensus 168 ld~lv~~Ll~ka~~-dnrFvreda~kAL~aMV~~vtp~-------~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~ 237 (334)
T KOG2933|consen 168 LDDLVTQLLHKASQ-DNRFVREDAEKALVAMVNHVTPQ-------KLLRKLIPILQHSNPRVRAKAALCFSRCVIRLG 237 (334)
T ss_pred HHHHHHHHHhhhcc-cchHHHHHHHHHHHHHHhccChH-------HHHHHHHHHHhhhchhhhhhhhccccccceecc
Confidence 55555555554444 57789999999999998887653 346677777888899999888888887777665
No 125
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.65 E-value=0.19 Score=57.04 Aligned_cols=362 Identities=15% Similarity=0.131 Sum_probs=187.5
Q ss_pred CchhhHHHHHHhhcCCChhHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhCCc
Q 001487 140 GWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSS 219 (1069)
Q Consensus 140 ~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~ 219 (1069)
.-.+++=.+...+++.+...|...-.++..+.....+ .--+...+.+-.+.. ....|..|+++|..++..-
T Consensus 61 eate~ff~~tKlfQskd~~LRr~vYl~Ikels~ised-----viivtsslmkD~t~~-~d~yr~~AiR~L~~I~d~~--- 131 (865)
T KOG1078|consen 61 EATELFFAITKLFQSKDVSLRRMVYLAIKELSKISED-----VIIVTSSLMKDMTGK-EDLYRAAAIRALCSIIDGT--- 131 (865)
T ss_pred hHHHHHHHHHHHHhhcCHHHHHHHHHHHhhccccchh-----hhhhhHHHHhhccCC-CcchhHHHHHHHHhhcCcc---
Confidence 4456777778888899988887776666665543222 112223333333443 6678888888887666431
Q ss_pred chHhHHHhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHccccHHHHHhHHHHHHHHHHHhcCCCcchHHHHHHHHHHH
Q 001487 220 ADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVI 299 (1069)
Q Consensus 220 ~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~ 299 (1069)
.++.+-..+.+++-+..+.++..++-.=..+..............+.+. . .+.+.-+...|+.++.
T Consensus 132 --------m~~~iery~kqaivd~~~avSsaalvss~hll~~~~~~vkrw~neiqea-----~-~s~~~m~QyHalglLy 197 (865)
T KOG1078|consen 132 --------MLQAIERYMKQAIVDKNPAVSSAALVSSYHLLPISFDVVKRWANEVQEA-----V-NSDNIMVQYHALGLLY 197 (865)
T ss_pred --------hhHHHHHHHHhHeeccccccchHHHHHHhhhhcccHHHHHHHHHhhhhc-----c-CcHHHHHHHHHHHHHH
Confidence 1223334444555455555544443222223333333322222222220 0 1122334555667776
Q ss_pred HHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCcchhhHHHHHHHHHHHcC--CccchHH
Q 001487 300 TLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALG--GNTIVPV 377 (1069)
Q Consensus 300 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~--~~~~~~~ 377 (1069)
.+-+.. .-.+.+++...... ... ...|...+.+.+..+- .......
T Consensus 198 qirk~d----------rla~sklv~~~~~~---~~~-------------------~~~A~~~lir~~~~~l~~~~~~~s~ 245 (865)
T KOG1078|consen 198 QIRKND----------RLAVSKLVQKFTRG---SLK-------------------SPLAVCMLIRIASELLKENQQADSP 245 (865)
T ss_pred HHHhhh----------HHHHHHHHHHHccc---ccc-------------------chhHHHHHHHHHHHHhhhcccchhh
Confidence 665421 01122222222110 000 0012222222211110 0233456
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhHhhhchhHHhhh
Q 001487 378 ASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQF 457 (1069)
Q Consensus 378 l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 457 (1069)
+.+++..++.+....+-.-|..++-.+....+..+. .-+..+-..+..+.+.+|.+|.++|.+++...+....
T Consensus 246 ~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l~----pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~--- 318 (865)
T KOG1078|consen 246 LFPFLESCLRHKSEMVIYEAARAIVSLPNTNSRELA----PAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVT--- 318 (865)
T ss_pred HHHHHHHHHhchhHHHHHHHHHHHhhccccCHhhcc----hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCcccc---
Confidence 788999999988877777676666666554443333 3556666678889999999999999999876654331
Q ss_pred hhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhHhh
Q 001487 458 HPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEH 537 (1069)
Q Consensus 458 ~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~i~~~l~~~l~~~~~~v~~~al~~l~~l~~~~~~~ 537 (1069)
..=..+-..+.| .+. .-+..++..+....... -.+.++..+...+.+-+.+.+--+..++.+++...+..
T Consensus 319 --~cN~elE~lItd-~Nr---sIat~AITtLLKTG~e~----sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k 388 (865)
T KOG1078|consen 319 --VCNLDLESLITD-SNR---SIATLAITTLLKTGTES----SVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRK 388 (865)
T ss_pred --ccchhHHhhhcc-ccc---chhHHHHHHHHHhcchh----HHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHH
Confidence 111122333444 443 33455566666654432 34555555555555544444445566666666554432
Q ss_pred hHhhHhhhhHHHHHHHhhccCccccchhhHHHHHHHHHHHhhC
Q 001487 538 FQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVG 580 (1069)
Q Consensus 538 ~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~ 580 (1069)
...++++|...|.+. ...+.+...++++..++....
T Consensus 389 ----~~~~m~FL~~~Lr~e---Gg~e~K~aivd~Ii~iie~~p 424 (865)
T KOG1078|consen 389 ----HTVMMNFLSNMLREE---GGFEFKRAIVDAIIDIIEENP 424 (865)
T ss_pred ----HHHHHHHHHHHHHhc---cCchHHHHHHHHHHHHHHhCc
Confidence 334566677766653 233456667777777665443
No 126
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=97.63 E-value=0.5 Score=61.28 Aligned_cols=198 Identities=15% Similarity=0.178 Sum_probs=128.6
Q ss_pred CCCHHHHHHHHHHHHhhcccCCCCcccCCC-HHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccC--CCCchhh
Q 001487 68 SPHPEARAMAAVLLRKLLTRDDSFLWPRLS-LHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILP--ENGWPEL 144 (1069)
Q Consensus 68 ~~~~~~R~~a~i~L~~~i~~~~~~~w~~l~-~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~--~~~w~~l 144 (1069)
+.+..++.+|.-.||++..+.. .+..++ -..++.+.+.+...+....+..+|..+.+++..+...... ...|+.+
T Consensus 1148 ~~n~~va~fAidsLrQLs~kfl--e~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktI 1225 (1780)
T PLN03076 1148 SENLSIAIFAMDSLRQLSMKFL--EREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSM 1225 (1780)
T ss_pred CcchhHHHHHHHHHHHHHHHhc--chhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHH
Confidence 4467889999998888766530 011221 1223344455666666656779999999999988765433 2589999
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHhhhhhhhhcc----hhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhCCc-
Q 001487 145 LPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLT----PHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSS- 219 (1069)
Q Consensus 145 l~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~----~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~- 219 (1069)
+..+...+.+.++.....|+.++..|+..+-..+. ..+..++..+........+.++-..|+..|..+...+...
T Consensus 1226 F~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~ 1305 (1780)
T PLN03076 1226 FMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGD 1305 (1780)
T ss_pred HHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhcc
Confidence 99999998888888889999999988876433222 3556666666665544334566667777776554333100
Q ss_pred ------------------------c------hHhH-HHhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHccccHHHHH
Q 001487 220 ------------------------A------DRDR-FQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRR 268 (1069)
Q Consensus 220 ------------------------~------~~~~-~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 268 (1069)
. ..+. ..-|+| ++..|.....+.++++|..|++.|-.+...++..|.+
T Consensus 1306 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~p-LL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~ 1384 (1780)
T PLN03076 1306 LGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFP-LLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFSL 1384 (1780)
T ss_pred ccccccccccccccccccccccccccccccccchhHHHHHHH-HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCCH
Confidence 0 0011 123444 4445555566789999999999999888877665544
No 127
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.62 E-value=0.24 Score=57.53 Aligned_cols=165 Identities=12% Similarity=0.085 Sum_probs=112.9
Q ss_pred cCCChHHHHHHHHH-HHHhhhcCchHHHHHHHHHHcc--CCCHHHHHHHHHHHHhhcccCCCCcccCCCHHHHHHHHHHH
Q 001487 32 MSTSNEQRSEAELL-FNLCKQQDPDSLTLKLAHLLQR--SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSML 108 (1069)
Q Consensus 32 ~s~d~~~r~~A~~~-L~~~~~~~p~~~~~~L~~il~~--~~~~~~R~~a~i~L~~~i~~~~~~~w~~l~~~~~~~i~~~l 108 (1069)
-+.+...|..|-+. +.++...++ +...+-+++.. +.+.++|++.=.+|.++-+. | |+..-.-.+.+
T Consensus 29 ~s~n~~~kidAmK~iIa~M~~G~d--mssLf~dViK~~~trd~ElKrL~ylYl~~yak~-----~----P~~~lLavNti 97 (757)
T COG5096 29 ESSNDYKKIDAMKKIIAQMSLGED--MSSLFPDVIKNVATRDVELKRLLYLYLERYAKL-----K----PELALLAVNTI 97 (757)
T ss_pred cccChHHHHHHHHHHHHHHhcCCC--hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcc-----C----HHHHHHHHHHH
Confidence 34444555555554 555554222 22333344443 77899999999999987654 3 45555555666
Q ss_pred HHHHhhcchhhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCCChhHHHHHHHHHHHhhhhhhhhcchhHHHHHHH
Q 001487 109 LQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAV 188 (1069)
Q Consensus 109 l~~l~~e~~~~vr~~~~~~i~~i~~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~ 188 (1069)
..-+.+ +++.+|..+.+.++.+-. + ..|+.+++.+.++++++++.+|..|..++..+.+.....+.+ ......
T Consensus 98 ~kDl~d-~N~~iR~~AlR~ls~l~~---~-el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~--~g~~~~ 170 (757)
T COG5096 98 QKDLQD-PNEEIRGFALRTLSLLRV---K-ELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHE--LGLIDI 170 (757)
T ss_pred HhhccC-CCHHHHHHHHHHHHhcCh---H-HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhc--ccHHHH
Confidence 677776 799999998888776522 2 578999999999999999999999999999888654443221 113344
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHHHHh
Q 001487 189 FLNCLTNSNNPDVKIAALNAVINFIQC 215 (1069)
Q Consensus 189 l~~~l~~~~~~~vr~~a~~~l~~l~~~ 215 (1069)
+...+.|. ++.|...|+.++..+-..
T Consensus 171 l~~l~~D~-dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 171 LKELVADS-DPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHhhCC-CchHHHHHHHHHHHhchh
Confidence 44556676 999998998888766543
No 128
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=97.60 E-value=0.04 Score=64.17 Aligned_cols=303 Identities=17% Similarity=0.177 Sum_probs=164.9
Q ss_pred hhhHHHHHHhhcCCChhHHHHHHHHHHHhhhhhhhhcch--hHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhCCc
Q 001487 142 PELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTP--HLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSS 219 (1069)
Q Consensus 142 ~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~--~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~ 219 (1069)
..+++.|...+.+++...+..++.+|..+.-.-. .+. .-..++|.+...+.++ ..+..++.+|..+...-.
T Consensus 330 ~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~--~R~~mV~~GlIPkLv~LL~d~---~~~~val~iLy~LS~dd~-- 402 (708)
T PF05804_consen 330 SGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPE--LRSQMVSLGLIPKLVELLKDP---NFREVALKILYNLSMDDE-- 402 (708)
T ss_pred cCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHH--HHHHHHHCCCcHHHHHHhCCC---chHHHHHHHHHHhccCHh--
Confidence 3578899999999988899999999998875422 222 2234677777777765 455567777776654311
Q ss_pred chHhHH--HhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHcccc--HHHHHhHHHHHHHHHHHhcCCCcchHHHHHHH
Q 001487 220 ADRDRF--QDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEP--RFLRRQLVDVVGSMLQIAEAESLEEGTRHLAI 295 (1069)
Q Consensus 220 ~~~~~~--~~~~~~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~--~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~ 295 (1069)
....| .+.+|.+++.+.. .+++.+...++.++..++.... +.+... ..++.+++..-.. .+ ...+
T Consensus 403 -~r~~f~~TdcIp~L~~~Ll~---~~~~~v~~eliaL~iNLa~~~rnaqlm~~g--~gL~~L~~ra~~~--~D---~lLl 471 (708)
T PF05804_consen 403 -ARSMFAYTDCIPQLMQMLLE---NSEEEVQLELIALLINLALNKRNAQLMCEG--NGLQSLMKRALKT--RD---PLLL 471 (708)
T ss_pred -hHHHHhhcchHHHHHHHHHh---CCCccccHHHHHHHHHHhcCHHHHHHHHhc--CcHHHHHHHHHhc--cc---HHHH
Confidence 12222 3556666666554 3344444444555554443221 111110 1122333222111 11 2345
Q ss_pred HHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCcchhhHHHHHHHHHHHcCCc---
Q 001487 296 EFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGN--- 372 (1069)
Q Consensus 296 ~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~--- 372 (1069)
.++..++.+. +.....+.+|+..++.. +...++ .....++++.++..--++
T Consensus 472 KlIRNiS~h~---~~~k~~f~~~i~~L~~~----v~~~~~-------------------ee~~vE~LGiLaNL~~~~ld~ 525 (708)
T PF05804_consen 472 KLIRNISQHD---GPLKELFVDFIGDLAKI----VSSGDS-------------------EEFVVECLGILANLTIPDLDW 525 (708)
T ss_pred HHHHHHHhcC---chHHHHHHHHHHHHHHH----hhcCCc-------------------HHHHHHHHHHHHhcccCCcCH
Confidence 6777777742 11112233344444433 322211 125667888877543211
Q ss_pred -cch--HHHHHHHHHhhcCC--ChHHHHHHHHHHHHHHhhcHHHHHHhH--HHHHHHHHhhCCCC--ChhHHHHHHHHHH
Q 001487 373 -TIV--PVASEQLPAYLAAP--EWQKHHAALIALAQIAEGCAKVMVKNL--EQVLSMVLNSFRDP--HPRVRWAAINAIG 443 (1069)
Q Consensus 373 -~~~--~~l~~~l~~~l~~~--~~~~r~aal~~l~~l~~~~~~~~~~~~--~~i~~~l~~~l~d~--~~~vr~~a~~~l~ 443 (1069)
.++ ..++|++...+... +......++..+|.++.... ....+ ..+++.++..|+.. +..+.-..++++.
T Consensus 526 ~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~--~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~ 603 (708)
T PF05804_consen 526 AQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPE--CAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFY 603 (708)
T ss_pred HHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHH--HHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHH
Confidence 122 14677777777632 34566667788888775321 12222 24555555555432 3344455666777
Q ss_pred HhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhc
Q 001487 444 QLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSEN 491 (1069)
Q Consensus 444 ~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~ 491 (1069)
++..+-...-.--.-.++...++..+.| +|+.+|..|-.+|.-+++.
T Consensus 604 ~ll~h~~tr~~ll~~~~~~~ylidL~~d-~N~~ir~~~d~~Ldii~e~ 650 (708)
T PF05804_consen 604 QLLFHEETREVLLKETEIPAYLIDLMHD-KNAEIRKVCDNALDIIAEY 650 (708)
T ss_pred HHHcChHHHHHHHhccchHHHHHHHhcC-CCHHHHHHHHHHHHHHHHh
Confidence 7765522110001225688889999999 9999998888888777654
No 129
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=97.57 E-value=0.12 Score=66.53 Aligned_cols=355 Identities=14% Similarity=0.143 Sum_probs=199.7
Q ss_pred CCCHHHHHHHHHHHHHHHhhcc--hhhHHHHHHHHHHHHHhcccCC--CCchh----hHHHHHHhhcCCChhHHHHHHHH
Q 001487 95 RLSLHTQSSLKSMLLQSIQLES--AKSISKKLCDTVSELASNILPE--NGWPE----LLPFMFQCVSSDSVKLQESAFLI 166 (1069)
Q Consensus 95 ~l~~~~~~~i~~~ll~~l~~e~--~~~vr~~~~~~i~~i~~~~~~~--~~w~~----ll~~l~~~~~~~~~~~r~~al~~ 166 (1069)
.++.+....+...|.+.=..|- ...-|.-...-+..++.+-..+ -.|+. +-+++.....+++..++.-|+..
T Consensus 1081 ~L~~eai~~fv~AL~~vS~eEl~~~~~pr~FsLqKLveIa~~Nm~Rirl~W~~iW~~l~~hf~~vg~~~n~~va~fAids 1160 (1780)
T PLN03076 1081 KLNSEAIIDFVKALCKVSMEELRSPSDPRVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVTIGCSENLSIAIFAMDS 1160 (1780)
T ss_pred cCCHHHHHHHHHHHHHhhHHHHccCCCCchhHHHHHHHHHHhcccchheehHhHHHHHHHHHHHhcCCcchhHHHHHHHH
Confidence 4666655555555554322110 0011333333444444432221 25665 45555554455667777888888
Q ss_pred HHHhhhhhhhh--cc--hhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhCCcchHhHHHhhHHHHHHHHHHHHhC
Q 001487 167 FAQLSQYIGDT--LT--PHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNN 242 (1069)
Q Consensus 167 l~~l~~~~~~~--~~--~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~ 242 (1069)
|+.++..+-+. +. .+...++..|...+.+..+.+||...++|+..++.... ..+..=++.++.++.....+
T Consensus 1161 LrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~-----~nIkSGWktIF~VLs~aa~d 1235 (1780)
T PLN03076 1161 LRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRV-----NNVKSGWKSMFMVFTTAAYD 1235 (1780)
T ss_pred HHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH-----hhhhcCcHHHHHHHHHHHhC
Confidence 88887764321 11 13345667776666655578999999999999987642 23444456677777766667
Q ss_pred CChHHHHHHHHHHHHHHccccHHHH----HhHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHhhhccchh-------
Q 001487 243 GNEATAQEALELLIELAGTEPRFLR----RQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGM------- 311 (1069)
Q Consensus 243 ~~~~~~~~~~~~l~~l~~~~~~~~~----~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~------- 311 (1069)
.++.....+++.+..+...+-..+. ..+.+++..+..+..+. .+.++...|++++..++..--+.+..
T Consensus 1236 ~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~-~~~nISL~AI~lL~~~~~~La~~~~~~~~~~~~ 1314 (1780)
T PLN03076 1236 DHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSR-FNKDISLNAIAFLRFCATKLAEGDLGSSSRNKD 1314 (1780)
T ss_pred ccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCc-CcccccHHHHHHHHHHHHHHHhccccccccccc
Confidence 7888888999998887764433222 45667777777776433 34566777777776554321000000
Q ss_pred ---------------h-----hcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCcchhhHHHHHHHHHHHcCC
Q 001487 312 ---------------M-----RKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGG 371 (1069)
Q Consensus 312 ---------------~-----~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~ 371 (1069)
. .....+..-.+|.|..+ .+...+ +....++-|.++|-.+...+|.
T Consensus 1315 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~L-s~l~~D-------------~RlEVR~~ALqtLF~iL~~yG~ 1380 (1780)
T PLN03076 1315 KEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGL-SELSFD-------------PRPEIRKSALQVLFDTLRNHGH 1380 (1780)
T ss_pred cccccccccccccccccccccccchhHHHHHHHHHHHH-HHHhcC-------------CcHHHHHHHHHHHHHHHHHhhc
Confidence 0 00001111123333222 111000 0122345566665555455552
Q ss_pred ccch--------H-HHHHHHHHhh---c--------------C------CChHHHHHHHHHHHHHHhhcH---HHHHHhH
Q 001487 372 NTIV--------P-VASEQLPAYL---A--------------A------PEWQKHHAALIALAQIAEGCA---KVMVKNL 416 (1069)
Q Consensus 372 ~~~~--------~-~l~~~l~~~l---~--------------~------~~~~~r~aal~~l~~l~~~~~---~~~~~~~ 416 (1069)
.+- . .++|.+...- . + ..|. .+.+..+|..+++-.. +.+...+
T Consensus 1381 -~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl-~eT~~~AL~~lvdLft~fFd~L~~~L 1458 (1780)
T PLN03076 1381 -LFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWL-YETCTLALQLVVDLFVKFYPTVNPLL 1458 (1780)
T ss_pred -cCCHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 221 1 3444443211 0 0 1132 4566666666665433 3444566
Q ss_pred HHHHHHHHhhCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccC
Q 001487 417 EQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDD 471 (1069)
Q Consensus 417 ~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~ 471 (1069)
+.++..+..++..++..+-..+..||.++....+..+.+..+..++..+.+.+..
T Consensus 1459 ~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~~F~~~~W~~i~~~~~~lf~~ 1513 (1780)
T PLN03076 1459 KKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGHLFSDEKWLEVVLSLKEAANA 1513 (1780)
T ss_pred HHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHH
Confidence 7777777788888899998899999999998888877777788888777776665
No 130
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=97.56 E-value=0.011 Score=65.26 Aligned_cols=309 Identities=14% Similarity=0.190 Sum_probs=160.1
Q ss_pred HHhhHHHHHHHHHHHHhCC----ChHHHHHHHHHHHHHHccccHHHHHhHHHHHHHHHHHhcCCCcchHHHHHHHHHHHH
Q 001487 225 FQDLLPLMMRTLTESLNNG----NEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVIT 300 (1069)
Q Consensus 225 ~~~~~~~~l~~l~~~l~~~----~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~ 300 (1069)
+....+.+++.|+..+..+ ++-+.+..++++..+-+.........+..+...+..+++|++ +...-...+|.+..
T Consensus 20 i~p~~~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPs-nP~FnHylFEsi~~ 98 (435)
T PF03378_consen 20 IQPFAQQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPS-NPRFNHYLFESIGA 98 (435)
T ss_dssp TTCCHHHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS----HHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCC-CcchhhhHHHHHHH
Confidence 3444556666666666532 333445555555544444344444455555565556667764 77888889999999
Q ss_pred HHHhhh-ccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCcchhhHHHHHHHHHHHcCCccchHHHH
Q 001487 301 LAEARE-RAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVAS 379 (1069)
Q Consensus 301 l~~~~~-~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~ 379 (1069)
+++... ..+ ..+..+-..++|.+...|...-. +. .....+.+..+.+..++..+-+...
T Consensus 99 lir~~~~~~~---~~v~~~E~~L~P~f~~ILq~dV~---------------EF--~PYvfQIla~Lle~~~~~~~p~~y~ 158 (435)
T PF03378_consen 99 LIRFVCEADP---EAVSQFEEALFPPFQEILQQDVQ---------------EF--IPYVFQILAQLLELRPSSPLPDAYK 158 (435)
T ss_dssp HHHHS-GGGH---H---HHHHHHHHHHHHHHHTT-T---------------TT--HHHHHHHHHHHHHHSS--S--TTTG
T ss_pred HHHhccCCCh---hHHHHHHHHHHHHHHHHHHHHHH---------------HH--HHHHHHHHHHHHHcCCCCCCcHHHH
Confidence 988521 111 12334556677777666653211 12 2345667777766654222322333
Q ss_pred HHHHHhhcCCChHHH---HHHHHHHHHHHhhcHHHH--HHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhHhhhchhHH
Q 001487 380 EQLPAYLAAPEWQKH---HAALIALAQIAEGCAKVM--VKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQ 454 (1069)
Q Consensus 380 ~~l~~~l~~~~~~~r---~aal~~l~~l~~~~~~~~--~~~~~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~ 454 (1069)
..+...+...-|+.| -+....|.++....+..+ ..++..++..+-+.+..+.. -..++..|..+...++.+..
T Consensus 159 ~L~~~Ll~p~lWe~~gniPalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~--D~~gF~LL~~iv~~~p~~~l 236 (435)
T PF03378_consen 159 QLFPPLLSPALWERRGNIPALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKAN--DHYGFDLLESIVENLPPEAL 236 (435)
T ss_dssp GGHHHHTSGGGGGSTTTHHHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TTC--HHHHHHHHHHHHHHS-HHHH
T ss_pred HHHHHHcCcchhccCCCcCcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCCc--chHHHHHHHHHHHHCCHHHH
Confidence 333344444456543 344555666555544433 25667777777777765542 24588899999999998776
Q ss_pred hhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCccc-------ccC-chHHHHHHH-HHHhhc-CChhHHHHHH
Q 001487 455 NQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEI-------LTP-YLDGIVSKL-LVLLQN-GKQMVQEGAL 524 (1069)
Q Consensus 455 ~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~-------~~~-~l~~i~~~l-~~~l~~-~~~~v~~~al 524 (1069)
.+|++.++..++..|+..+..+.....+..+..++-..+++. +.+ .+..++..+ +..++. ....-|+.+.
T Consensus 237 ~~yl~~I~~lll~RLq~skT~kf~~~fv~F~~~~~~~~g~~~li~~id~IQ~glF~~il~~v~lp~~~k~~~~~erKi~~ 316 (435)
T PF03378_consen 237 EPYLKQIFTLLLTRLQSSKTEKFVKRFVVFLSLFAIKYGPDFLIQTIDSIQPGLFGMILEKVWLPDLQKVSGPIERKICA 316 (435)
T ss_dssp GGGHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH-HHHHHHHHHTTSTTHHHHHHHHTHHHHGGG--SHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCCcHHHHHHHHhcCchhhcCCcchhhHHH
Confidence 899999999999999864555544444444444433222221 111 222333322 233333 2233455555
Q ss_pred HHHHHHHHhhHh---hhHhhHhhhhHHHHHHHhhc
Q 001487 525 TALASVADSSQE---HFQKYYDAVMPFLKAILVNA 556 (1069)
Q Consensus 525 ~~l~~l~~~~~~---~~~~~~~~i~~~l~~~l~~~ 556 (1069)
-.+..+...... .....+..+++.+...+...
T Consensus 317 vGltkLL~es~~~~~~~~~~w~~ll~~Ll~ll~~p 351 (435)
T PF03378_consen 317 VGLTKLLCESPAFLSEYSQLWPPLLEALLKLLERP 351 (435)
T ss_dssp HHHHHHHHSSTTHHHH-CHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhccHhhhhHHHHHHHHHHHHHHHHHcCC
Confidence 555555533221 22335556666666666553
No 131
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.55 E-value=0.016 Score=61.24 Aligned_cols=198 Identities=18% Similarity=0.145 Sum_probs=132.8
Q ss_pred HhhCCCCChhHHHHHHHHHHHhHh-hhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCC-cccccCch
Q 001487 424 LNSFRDPHPRVRWAAINAIGQLST-DLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCT-PEILTPYL 501 (1069)
Q Consensus 424 ~~~l~d~~~~vr~~a~~~l~~l~~-~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~-~~~~~~~l 501 (1069)
+..+.+.+...|.+++..+..+.. ...+.+.......++..+.+.++. ....-+..|+.++.-++-.++ .......+
T Consensus 49 Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkk-g~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~ 127 (309)
T PF05004_consen 49 IDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKK-GKSEEQALAARALALLALTLGAGEDSEEIF 127 (309)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHHhhhcCCCccHHHHH
Confidence 335567788999999988876653 344555467788899999999987 555556667777777766544 12234677
Q ss_pred HHHHHHHHHHhhcCC--hhHHHHHHHHHHHHHHhhHhhhHhhHh--hhhHHHHH--HHhhccC------ccccchhhHHH
Q 001487 502 DGIVSKLLVLLQNGK--QMVQEGALTALASVADSSQEHFQKYYD--AVMPFLKA--ILVNATD------KSNRMLRAKSM 569 (1069)
Q Consensus 502 ~~i~~~l~~~l~~~~--~~v~~~al~~l~~l~~~~~~~~~~~~~--~i~~~l~~--~l~~~~~------~~~~~lr~~a~ 569 (1069)
..+.|.|.+.+.+.. ..+|..++.|+|.++...+.+...+.. ..+..+.. ..+.... ++...+...|+
T Consensus 128 ~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL 207 (309)
T PF05004_consen 128 EELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAAL 207 (309)
T ss_pred HHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHH
Confidence 888888888887764 467778888999888776654333321 33342222 1221111 12345888899
Q ss_pred HHHHHHHHhhChhhhhhhHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHHHhc
Q 001487 570 ECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLG 625 (1069)
Q Consensus 570 ~~l~~l~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~ 625 (1069)
.+++.+...++...+...+...++.+..+..+ ++..+|-.+-.+++-+.+...
T Consensus 208 ~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s---~d~~VRiAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 208 SAWALLLTTLPDSKLEDLLEEALPALSELLDS---DDVDVRIAAGEAIALLYELAR 260 (309)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHhh
Confidence 99999999998767777777788887775543 233578777777776666544
No 132
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=97.53 E-value=0.76 Score=60.82 Aligned_cols=267 Identities=15% Similarity=0.144 Sum_probs=156.0
Q ss_pred HHhhCCCCChhHHHHHHHHHHHhHhhhch------hHHhhhhhhhHHHHHhh-ccCCCChhHHHHHHHHHHHhhhcCCcc
Q 001487 423 VLNSFRDPHPRVRWAAINAIGQLSTDLGP------DLQNQFHPQVLPALAGA-MDDFQNPRVQAHAASAVLNFSENCTPE 495 (1069)
Q Consensus 423 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~------~~~~~~~~~il~~l~~~-l~~~~~~~v~~~a~~al~~l~~~~~~~ 495 (1069)
+...+...++.+|..+..++..+..+... .. .+++..++..+... +.+ +++.++.+....+. +.+.+.
T Consensus 486 ~~~~~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~-~~~v~~vl~~ll~~aia~-~~~~i~~~v~~~l~---~~~~~~ 560 (2341)
T KOG0891|consen 486 VDSYLEADDSEIRKNAALTCCELLKYDIICSQTSPHA-LQVVKEVLSALLTVAIAD-TDPDIRIRVLSSLN---ERFDAQ 560 (2341)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhhhhhhcccchH-HHHHHHHHHHHHHHhccC-CCcchhhhHHhhhc---cchhhh
Confidence 33455667888999987777776655432 11 13355555555553 344 67777766655543 222211
Q ss_pred cccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhHhhhHhhHhhhhHHHHHHHhhccCccccchhhHHHHHHHHH
Q 001487 496 ILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLV 575 (1069)
Q Consensus 496 ~~~~~l~~i~~~l~~~l~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~l 575 (1069)
-..+..+..++..+.+..-.+++.+...+|.++...+..+.|++........+-++-.. ....+..+..-+..+
T Consensus 561 ---laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg---~~r~~~~~a~~~~~~ 634 (2341)
T KOG0891|consen 561 ---LAQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSG---MARTKEESAKLLCEL 634 (2341)
T ss_pred ---hcCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcc---hHHhHHHHHHHhhHH
Confidence 12334456677778888888888888888888775554444555444433333222110 001111111111111
Q ss_pred HHhhChhhhhhhHHHHHHHHHH-HhcCCCCCCCchhhHHHHHHHHHHHHhcCCcccchhhhhHHHHHhcccCCCccccCC
Q 001487 576 GMAVGKDKFRDDAKQVMEVLMS-LQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSA 654 (1069)
Q Consensus 576 ~~~~~~~~~~~~~~~i~~~l~~-l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~ 654 (1069)
..... ..+.||..+++..+.. ++.. ...+...+..+.+.++...|..+..++...++.+.+.+....
T Consensus 635 i~~~~-~~i~~~v~~~l~~~~~~~~~~----~s~~~~~~~~~~~eL~~v~g~~~~~~~~~~~~~~~~~l~~~s------- 702 (2341)
T KOG0891|consen 635 IISSP-VLISPYVGPILLVLLPKLQDP----SSGVEKAVLETIGELCAVGGEEMVKWVDELFSLIIKMLQDQS------- 702 (2341)
T ss_pred HHHHH-HHHHhhcCchHHHHHHHHhcc----chhhHHHHHHHHHHHHHhccchhhhccchHHHHHHHHHHHhh-------
Confidence 11111 3356676666665555 3221 123556777889999999998887777777777777764211
Q ss_pred CCccccccCCCcccchhhcCCceeeeccchHHHHHHHHHHHHHHHHHhhhcccccH--HHHHHHHhhccCCcCChHHHHH
Q 001487 655 DSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWI--DQVAPTLVPLLKFYFHEEVRKA 732 (1069)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~a~~~l~~l~~~~~~~~~p~~--~~~~~~l~~~l~~~~~~~ir~~ 732 (1069)
....+..++.+++.+....+-...||. +.++..+...+.......+|..
T Consensus 703 -----------------------------~~~rr~aslk~l~~l~s~~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~ 753 (2341)
T KOG0891|consen 703 -----------------------------SLGKRLAALKALGQLESSTGYVVDPYLDYPELLDILINILKTEQSSTIRRE 753 (2341)
T ss_pred -----------------------------hhhchhHHHHHhhhhhcccceEecccccChHHHHHHHHHHhHhhhhHHHHH
Confidence 122356788889988887776777775 6677776666555556778888
Q ss_pred HHHhHHHHH
Q 001487 733 AVSAMPELL 741 (1069)
Q Consensus 733 a~~~l~~l~ 741 (1069)
+...++.+.
T Consensus 754 ~v~~~g~~g 762 (2341)
T KOG0891|consen 754 AIRLLGLLG 762 (2341)
T ss_pred HHHHhhhhc
Confidence 888877553
No 133
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.51 E-value=0.013 Score=66.58 Aligned_cols=233 Identities=15% Similarity=0.188 Sum_probs=160.3
Q ss_pred HHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhHhhhHhh
Q 001487 462 LPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKY 541 (1069)
Q Consensus 462 l~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~i~~~l~~~l~~~~~~v~~~al~~l~~l~~~~~~~~~~~ 541 (1069)
+...+..+.| +.+.+|..+...+..+++.-.+.. .-....++...+..+.+.++.|--.++..+..+++..++
T Consensus 729 ~qeai~sl~d-~qvpik~~gL~~l~~l~e~r~~~~-~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e----- 801 (982)
T KOG4653|consen 729 LQEAISSLHD-DQVPIKGYGLQMLRHLIEKRKKAT-LIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPE----- 801 (982)
T ss_pred HHHHHHHhcC-CcccchHHHHHHHHHHHHhcchhh-hhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcch-----
Confidence 5556666777 778899999999999998654332 345667888899999999998888888888888887554
Q ss_pred HhhhhHHHHHHHhhccCccccchhhHHHHHHHHHHHhhChhhhhhhHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHH
Q 001487 542 YDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLC 621 (1069)
Q Consensus 542 ~~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~ 621 (1069)
.++|-+.+...+........-|-++-+++..++.+.| +.+..|...+++..+.... +.+...|.+.+..+|.++
T Consensus 802 --~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~G-el~~~y~~~Li~tfl~gvr---epd~~~RaSS~a~lg~Lc 875 (982)
T KOG4653|consen 802 --DILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALG-ELVFKYKAVLINTFLSGVR---EPDHEFRASSLANLGQLC 875 (982)
T ss_pred --hhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHhcC---CchHHHHHhHHHHHHHHH
Confidence 4555555533332221111223445589999999999 8888898888888877332 223457888999999999
Q ss_pred HHhcCCcccchhhhhHHHHHhcccCCCccccCCCCccccccCCCcccchhhcCCceeeeccchHHHHHHHHHHHHHHHHH
Q 001487 622 KCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADE 701 (1069)
Q Consensus 622 ~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~a~~~l~~l~~~ 701 (1069)
.........++..+...++.....+ +....|.+|...+..+..+
T Consensus 876 q~~a~~vsd~~~ev~~~Il~l~~~d------------------------------------~s~~vRRaAv~li~~lL~~ 919 (982)
T KOG4653|consen 876 QLLAFQVSDFFHEVLQLILSLETTD------------------------------------GSVLVRRAAVHLLAELLNG 919 (982)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHccC------------------------------------CchhhHHHHHHHHHHHHhc
Confidence 8876555556666666666555321 1133578899999999999
Q ss_pred hhhcccccH----HHHHHHHhhccCCcCChHHHHHHHHhHHHHHHH
Q 001487 702 LKEGFFPWI----DQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRS 743 (1069)
Q Consensus 702 ~~~~~~p~~----~~~~~~l~~~l~~~~~~~ir~~a~~~l~~l~~~ 743 (1069)
++..+.|++ -+....+..+......+.+|.-|+.++-.+-..
T Consensus 920 tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei~a~ 965 (982)
T KOG4653|consen 920 TGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEIQAA 965 (982)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHH
Confidence 998888854 344444444444444566777777776655443
No 134
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=97.50 E-value=0.0031 Score=59.72 Aligned_cols=139 Identities=17% Similarity=0.220 Sum_probs=111.5
Q ss_pred CchhhHHHHHHhhcCCChhHHHHHHHHHHHhhhhh-hhhcchhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhCC
Q 001487 140 GWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYI-GDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTS 218 (1069)
Q Consensus 140 ~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~-~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~ 218 (1069)
.+..+...+.+.++++++..|-.|+..++.+++.. .+.+..+....+..+++.++.++...++..++.++..++....+
T Consensus 22 ~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~ 101 (165)
T PF08167_consen 22 ALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRG 101 (165)
T ss_pred HHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 45666777888888999999999999999999987 45566788889999999999876778899999999999987653
Q ss_pred c--chHhHHHhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHccccHHHHHhHHHHHHHHHHH
Q 001487 219 S--ADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQI 280 (1069)
Q Consensus 219 ~--~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~ 280 (1069)
. ..++.....+|.+++.+.+.+++ ......++.++..+...+|..|+|+...+-..+...
T Consensus 102 ~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~l 163 (165)
T PF08167_consen 102 KPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTTFRPFANKIESALLSL 163 (165)
T ss_pred CCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCccccchHHHHHHHHHHH
Confidence 2 13444556788888888887763 566788999999999999999999888776665543
No 135
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=97.48 E-value=0.0049 Score=72.27 Aligned_cols=165 Identities=17% Similarity=0.209 Sum_probs=137.7
Q ss_pred chHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhHhhhchhH
Q 001487 374 IVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDL 453 (1069)
Q Consensus 374 ~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~ 453 (1069)
....+...+.-...|.|..+-.-++.+|..++...+....++...+.|.++..+.+..+.+|.++..++..++..
T Consensus 292 ~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns----- 366 (815)
T KOG1820|consen 292 YTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNS----- 366 (815)
T ss_pred cchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhc-----
Confidence 344455555666678999999999999999999999888889999999999999999999999999999888762
Q ss_pred HhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCc-ccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHH
Q 001487 454 QNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTP-EILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVAD 532 (1069)
Q Consensus 454 ~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~-~~~~~~l~~i~~~l~~~l~~~~~~v~~~al~~l~~l~~ 532 (1069)
..+..+.+.+...+.+ .+|.++..+...+...+...++ .....-...+++.+....++.+..||..++.+++.+..
T Consensus 367 --~~l~~~~~~I~e~lk~-knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k 443 (815)
T KOG1820|consen 367 --TPLSKMSEAILEALKG-KNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMK 443 (815)
T ss_pred --ccHHHHHHHHHHHhcC-CChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHH
Confidence 3467788889999999 9999999999999998887773 22345678899999999999999999999999999999
Q ss_pred hhHhh-hHhhHhhhh
Q 001487 533 SSQEH-FQKYYDAVM 546 (1069)
Q Consensus 533 ~~~~~-~~~~~~~i~ 546 (1069)
..|+. +..|+..+-
T Consensus 444 ~~Ge~~~~k~L~~~~ 458 (815)
T KOG1820|consen 444 VHGEEVFKKLLKDLD 458 (815)
T ss_pred HhhHHHHHHHHHhhc
Confidence 99875 334444443
No 136
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=97.45 E-value=0.0084 Score=60.78 Aligned_cols=191 Identities=19% Similarity=0.220 Sum_probs=122.4
Q ss_pred HHHHHHhhc-CCChHHHHHHHHHHHHHHhhcHHHHHHhHH--HHHHHHHhhCCCCChhHHHHHHHHHHHhHhhhchhH-H
Q 001487 379 SEQLPAYLA-APEWQKHHAALIALAQIAEGCAKVMVKNLE--QVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDL-Q 454 (1069)
Q Consensus 379 ~~~l~~~l~-~~~~~~r~aal~~l~~l~~~~~~~~~~~~~--~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~-~ 454 (1069)
++.+...++ +.++..++.++.+++..+..... ...+. ..++.+...+.++++.+|..|++++..++....... .
T Consensus 14 l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~n--q~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~I 91 (254)
T PF04826_consen 14 LQKLLCLLESTEDPFIQEKALIALGNSAAFPFN--QDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQI 91 (254)
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhhccChhH--HHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHH
Confidence 344445555 56899999999999987654321 12222 357888899999999999999999998876543211 1
Q ss_pred hhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhh
Q 001487 455 NQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSS 534 (1069)
Q Consensus 455 ~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~i~~~l~~~l~~~~~~v~~~al~~l~~l~~~~ 534 (1069)
..|++.++..+.. ..-+..+|.++..+|.++.-.-. ....+...++.++.++...+..+|..++.++..++...
T Consensus 92 k~~i~~Vc~~~~s---~~lns~~Q~agLrlL~nLtv~~~---~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np 165 (254)
T PF04826_consen 92 KMYIPQVCEETVS---SPLNSEVQLAGLRLLTNLTVTND---YHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENP 165 (254)
T ss_pred HHHHHHHHHHHhc---CCCCCHHHHHHHHHHHccCCCcc---hhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCH
Confidence 3344555544433 21357889999999988853321 22344556777888899999999999999999998653
Q ss_pred HhhhHhh-HhhhhHHHHHHHhhccCccccchhhHHHHHHHHHHHhhCh
Q 001487 535 QEHFQKY-YDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGK 581 (1069)
Q Consensus 535 ~~~~~~~-~~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~ 581 (1069)
.- .... -.+..+.+..++.... ...+--+++..+..+...+++
T Consensus 166 ~~-~~~Ll~~q~~~~~~~Lf~~~~---~~~~l~~~l~~~~ni~~~~~~ 209 (254)
T PF04826_consen 166 DM-TRELLSAQVLSSFLSLFNSSE---SKENLLRVLTFFENINENIKK 209 (254)
T ss_pred HH-HHHHHhccchhHHHHHHccCC---ccHHHHHHHHHHHHHHHhhCc
Confidence 21 1111 2345666666665432 233444456666666555553
No 137
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=97.43 E-value=0.2 Score=54.82 Aligned_cols=353 Identities=12% Similarity=0.095 Sum_probs=176.2
Q ss_pred CchHHHHHHHHHHccCCCHHHHHHHHHHHHhhcccCCCCcccCCCHH--HHHHHHHHHHHHHhhcchhhHHHHHHHHHHH
Q 001487 53 DPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLH--TQSSLKSMLLQSIQLESAKSISKKLCDTVSE 130 (1069)
Q Consensus 53 ~p~~~~~~L~~il~~~~~~~~R~~a~i~L~~~i~~~~~~~w~~l~~~--~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~ 130 (1069)
+.+.+...+++++.....+.+.+....++..++...+ ..+..+-+. .....-..++..|.. .+..+...++.+++.
T Consensus 50 ~~~~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~-~~~~~f~~~~~~~~~~~~~fl~lL~~-~d~~i~~~a~~iLt~ 127 (429)
T cd00256 50 LSGQYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDD-TRVKLFHDDALLKKKTWEPFFNLLNR-QDQFIVHMSFSILAK 127 (429)
T ss_pred cHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhch-HHHHHHHHHhhccccchHHHHHHHcC-CchhHHHHHHHHHHH
Confidence 4456778889999888889999999999988887641 111111100 001122345556665 588899999999999
Q ss_pred HHhcccCCCCc----hhhHHHHHHhhcCC-ChhHHHHHHHHHHHhhhhhh--hhcchhHHHHHHHHHHhhcCCC-ChHHH
Q 001487 131 LASNILPENGW----PELLPFMFQCVSSD-SVKLQESAFLIFAQLSQYIG--DTLTPHLKHLHAVFLNCLTNSN-NPDVK 202 (1069)
Q Consensus 131 i~~~~~~~~~w----~~ll~~l~~~~~~~-~~~~r~~al~~l~~l~~~~~--~~~~~~~~~l~~~l~~~l~~~~-~~~vr 202 (1069)
++... +.+.- +.+++.+...++++ +...+..++.++..+...-. ..+-. ...++.+...++... +.+..
T Consensus 128 l~~~~-~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~--~~~v~~L~~~L~~~~~~~Ql~ 204 (429)
T cd00256 128 LACFG-LAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVL--ADGVPTLVKLLSNATLGFQLQ 204 (429)
T ss_pred HHhcC-ccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHH--ccCHHHHHHHHhhccccHHHH
Confidence 98753 21222 22444555555544 35666778888887765421 11110 113344444454431 34556
Q ss_pred HHHHHHHHHHHHhhCCcchHhHH--HhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHccccHH--HHHhHHHHHH---
Q 001487 203 IAALNAVINFIQCLTSSADRDRF--QDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRF--LRRQLVDVVG--- 275 (1069)
Q Consensus 203 ~~a~~~l~~l~~~~~~~~~~~~~--~~~~~~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~--~~~~~~~l~~--- 275 (1069)
..++-|+=-+. +... ..+.. .+++|.+++.+... ..+.+..-++.+|..++...... -..+...++.
T Consensus 205 Y~~ll~lWlLS--F~~~-~~~~~~~~~~i~~l~~i~k~s---~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l 278 (429)
T cd00256 205 YQSIFCIWLLT--FNPH-AAEVLKRLSLIQDLSDILKES---TKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKV 278 (429)
T ss_pred HHHHHHHHHHh--ccHH-HHHhhccccHHHHHHHHHHhh---hhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcCh
Confidence 66655543322 2211 11111 24566666665543 35566677777777777643110 0111111111
Q ss_pred -HHHHHh-cCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCc
Q 001487 276 -SMLQIA-EAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESS 353 (1069)
Q Consensus 276 -~l~~~~-~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~e~ed~~~~~ 353 (1069)
.+++.+ ..+-.|+++. ..++.+....+.. ......+..|...+.... -+|...- .++ .
T Consensus 279 ~~~l~~L~~rk~~DedL~-edl~~L~e~L~~~---~k~ltsfD~Y~~El~sg~----------L~WSp~H-~se-----~ 338 (429)
T cd00256 279 LKTLQSLEQRKYDDEDLT-DDLKFLTEELKNS---VQDLSSFDEYKSELRSGR----------LHWSPVH-KSE-----K 338 (429)
T ss_pred HHHHHHHhcCCCCcHHHH-HHHHHHHHHHHHH---HHHcCCHHHHHHHHhcCC----------ccCCCCC-CCc-----h
Confidence 122222 2222344433 3344444444321 000011122222222111 1242111 000 0
Q ss_pred chhhHHHHHHHHHHHcCCccchHHHHHHHHHhh-cCCChHHHHHHHHHHHHHHhhcHH--HHHHhHHHHHHHHHhhCCCC
Q 001487 354 NYSVGQECLDRLAIALGGNTIVPVASEQLPAYL-AAPEWQKHHAALIALAQIAEGCAK--VMVKNLEQVLSMVLNSFRDP 430 (1069)
Q Consensus 354 ~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l-~~~~~~~r~aal~~l~~l~~~~~~--~~~~~~~~i~~~l~~~l~d~ 430 (1069)
-|+- -...+- .+. -.++..+.+.+ ++.++.+-..|+.=+|.++...|. .+...++ .-..+++.+.++
T Consensus 339 FW~E---N~~kf~----~~~--~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg-~K~~vM~Lm~h~ 408 (429)
T cd00256 339 FWRE---NADRLN----EKN--YELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLG-GKQRVMRLLNHE 408 (429)
T ss_pred HHHH---HHHHHH----hcc--hHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcC-cHHHHHHHhcCC
Confidence 1211 001111 011 12334444444 345677777788888988887653 2222221 345688889999
Q ss_pred ChhHHHHHHHHHHHhH
Q 001487 431 HPRVRWAAINAIGQLS 446 (1069)
Q Consensus 431 ~~~vr~~a~~~l~~l~ 446 (1069)
++.||..|+.|++.+.
T Consensus 409 d~~Vr~eAL~avQklm 424 (429)
T cd00256 409 DPNVRYEALLAVQKLM 424 (429)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999999998874
No 138
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=97.42 E-value=0.057 Score=55.29 Aligned_cols=245 Identities=16% Similarity=0.219 Sum_probs=134.0
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHHHHhhCCcchHhHHHhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHccccHHHHH
Q 001487 189 FLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRR 268 (1069)
Q Consensus 189 l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 268 (1069)
+-..|+++ ++.+|..|+.+|..++..++... .-..-+..+++.+...+. |......++..+..+++. ..+-..
T Consensus 4 Lg~~Ltse-d~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~--D~~~~~~~l~gl~~L~~~-~~~~~~ 76 (262)
T PF14500_consen 4 LGEYLTSE-DPIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLD--DHACVQPALKGLLALVKM-KNFSPE 76 (262)
T ss_pred hhhhhCCC-CHHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhc--cHhhHHHHHHHHHHHHhC-cCCChh
Confidence 45678887 99999999999999999885321 111223345555555553 555556667777777742 222223
Q ss_pred hHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCcc
Q 001487 269 QLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDED 348 (1069)
Q Consensus 269 ~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~e~ed 348 (1069)
....++..+.+....+......|..+++++..+.+.. .. .+...-...+..+++.+. .+.|+
T Consensus 77 ~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~---~~---~l~~~~~~fv~~~i~~~~-gEkDP----------- 138 (262)
T PF14500_consen 77 SAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENH---RE---ALQSMGDDFVYGFIQLID-GEKDP----------- 138 (262)
T ss_pred hHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHh---HH---HHHhchhHHHHHHHHHhc-cCCCH-----------
Confidence 3445555555433333345667899999998888741 11 111122333333333321 11111
Q ss_pred ccCCcchhhHHHHHHHHHHHcCCccchHHHHHHHHHhh--------cCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHH
Q 001487 349 AGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYL--------AAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVL 420 (1069)
Q Consensus 349 ~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l--------~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~i~ 420 (1069)
...-.+.+.+..+...+......+.+...+.-+. +++..-.|+.--.+|.......+ .+-+..+
T Consensus 139 ----RnLl~~F~l~~~i~~~~~~~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~----~fa~~~~ 210 (262)
T PF14500_consen 139 ----RNLLLSFKLLKVILQEFDISEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTP----LFAPFAF 210 (262)
T ss_pred ----HHHHHHHHHHHHHHHhcccchhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcH----hhHHHHH
Confidence 1112244444444444432223333333222221 11211123322222322221111 2345678
Q ss_pred HHHHhhCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHH
Q 001487 421 SMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALA 466 (1069)
Q Consensus 421 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~ 466 (1069)
|.++.-|.++.+.++..++.+|...+...++....+|+..++..+-
T Consensus 211 p~LleKL~s~~~~~K~D~L~tL~~c~~~y~~~~~~~~~~~iw~~lk 256 (262)
T PF14500_consen 211 PLLLEKLDSTSPSVKLDSLQTLKACIENYGADSLSPHWSTIWNALK 256 (262)
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998888877655677777777663
No 139
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=97.41 E-value=0.26 Score=53.52 Aligned_cols=131 Identities=23% Similarity=0.227 Sum_probs=86.5
Q ss_pred hHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhh---CCCCChhHHHHHHHHHHHhHhhhch------------hHHh
Q 001487 391 WQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNS---FRDPHPRVRWAAINAIGQLSTDLGP------------DLQN 455 (1069)
Q Consensus 391 ~~~r~aal~~l~~l~~~~~~~~~~~~~~i~~~l~~~---l~d~~~~vr~~a~~~l~~l~~~~~~------------~~~~ 455 (1069)
-..|.||...+..+++...+.+.+.+...+..++.. -...+++-+.+|+..++.++..... .+..
T Consensus 225 ~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~ 304 (370)
T PF08506_consen 225 DTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVD 304 (370)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHH
T ss_pred CCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHH
Confidence 457789999999998776554444444444433331 1245788899999999998865421 1212
Q ss_pred hhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHH
Q 001487 456 QFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTAL 527 (1069)
Q Consensus 456 ~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~i~~~l~~~l~~~~~~v~~~al~~l 527 (1069)
-+...++|.|. .-.+ ..|-++..|+..+..|-..+++ ..+..++|.+...+.+++.-|+..|..|+
T Consensus 305 Ff~~~v~peL~-~~~~-~~piLka~aik~~~~Fr~~l~~----~~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 305 FFSQHVLPELQ-PDVN-SHPILKADAIKFLYTFRNQLPK----EQLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHTCHHHH--SS--S-HHHHHHHHHHHHHHGGGS-H----HHHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHhHHHhc-ccCC-CCcchHHHHHHHHHHHHhhCCH----HHHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 23455677776 2223 5788999999999999887764 46788999999999999988887776654
No 140
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.40 E-value=0.00076 Score=56.61 Aligned_cols=86 Identities=34% Similarity=0.552 Sum_probs=67.3
Q ss_pred HHHHHhhC-CCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCccccc
Q 001487 420 LSMVLNSF-RDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILT 498 (1069)
Q Consensus 420 ~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~ 498 (1069)
++.+++.+ +|+++.+|..++++|+.+. .+.+++.+...+++ +++.||..|+.+|+.+-
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~-----------~~~~~~~L~~~l~d-~~~~vr~~a~~aL~~i~--------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG-----------DPEAIPALIELLKD-EDPMVRRAAARALGRIG--------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT-----------HHHHHHHHHHHHTS-SSHHHHHHHHHHHHCCH---------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC-----------CHhHHHHHHHHHcC-CCHHHHHHHHHHHHHhC---------
Confidence 46677777 8999999999999998542 23678888888888 99999999999998762
Q ss_pred CchHHHHHHHHHHhhcC-ChhHHHHHHHHHH
Q 001487 499 PYLDGIVSKLLVLLQNG-KQMVQEGALTALA 528 (1069)
Q Consensus 499 ~~l~~i~~~l~~~l~~~-~~~v~~~al~~l~ 528 (1069)
-+..++.|...+.++ +..+|..+..+||
T Consensus 60 --~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 --DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp --HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 244667778877765 4567999988876
No 141
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=97.40 E-value=0.4 Score=54.50 Aligned_cols=313 Identities=13% Similarity=0.154 Sum_probs=153.7
Q ss_pred HHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCC-ChhHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHhhcCCCC
Q 001487 120 ISKKLCDTVSELASNILPENGWPELLPFMFQCVSSD-SVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNN 198 (1069)
Q Consensus 120 vr~~~~~~i~~i~~~~~~~~~w~~ll~~l~~~~~~~-~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~ 198 (1069)
-|..++.-++..+.. ++-..-+++-.....++... ..+.|..++..+..+++.-.......-..++..+...-.+ ++
T Consensus 6 ~R~~a~~~l~~~i~~-~~~~~i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~~R~~fF~~I~~~~~~-~d 83 (464)
T PF11864_consen 6 ERIKAAEELCESIQK-YPLSSIEEIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGLMRAEFFRDISDPSND-DD 83 (464)
T ss_pred HHHHHHHHHHHHHHh-CCchHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHhcCCCc-hh
Confidence 455555555555553 33234444444444444433 3478999999999998875432211122233333222112 14
Q ss_pred hHHHHHHHHHHHHHHHhhCC--cchHhHHHhhHHHHHHHHHH---HHh-------------CCChHHHHHHHHHHHHHHc
Q 001487 199 PDVKIAALNAVINFIQCLTS--SADRDRFQDLLPLMMRTLTE---SLN-------------NGNEATAQEALELLIELAG 260 (1069)
Q Consensus 199 ~~vr~~a~~~l~~l~~~~~~--~~~~~~~~~~~~~~l~~l~~---~l~-------------~~~~~~~~~~~~~l~~l~~ 260 (1069)
-..|..|+.+|..=-..+.. .+....+..+++...+.... ... +.+.......+..+..+++
T Consensus 84 ~~~~l~aL~~LT~~Grdi~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nviK 163 (464)
T PF11864_consen 84 FDLRLEALIALTDNGRDIDFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVIK 163 (464)
T ss_pred HHHHHHHHHHHHcCCcCchhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHHHh
Confidence 45666666666532222210 00111122222222211110 000 0122334455677777777
Q ss_pred cccHHHH-HhHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCccc
Q 001487 261 TEPRFLR-RQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLW 339 (1069)
Q Consensus 261 ~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~ 339 (1069)
.....+. ..+..++..++.++......+++ ..++.++.+++... ..| ..-+..++..|.......
T Consensus 164 fn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di-~~~L~vldaii~y~-~iP------~~sl~~~i~vLCsi~~~~------ 229 (464)
T PF11864_consen 164 FNFNYLDEDEISSLVDQICTICKSTSSEDDI-EACLSVLDAIITYG-DIP------SESLSPCIEVLCSIVNSV------ 229 (464)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhccCcHHHH-HHHHHHHHHHHHcC-cCC------hHHHHHHHHHHhhHhccc------
Confidence 6554444 45566666666665444333444 67788888887731 112 123344444444332111
Q ss_pred ccCCCCCccccCCcchhhHHHHHHHHHHHcCCccchHHHHHHHHHhhc------CCChHHHHHHHHHHHHHHhhcHHHHH
Q 001487 340 HSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLA------APEWQKHHAALIALAQIAEGCAKVMV 413 (1069)
Q Consensus 340 ~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~------~~~~~~r~aal~~l~~l~~~~~~~~~ 413 (1069)
+..+.+-+++..|... ..-...+..+...+. .++..+-.+|+..++.+.-+.++.-.
T Consensus 230 -------------~l~~~~w~~m~nL~~S----~~g~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~ 292 (464)
T PF11864_consen 230 -------------SLCKPSWRTMRNLLKS----HLGHSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGY 292 (464)
T ss_pred -------------ccchhHHHHHHHHHcC----ccHHHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCc
Confidence 0122333455555532 222333444444442 34567778999999987766532111
Q ss_pred H--hHH--HHHHHHHhhCCCCChhHHHHHHHHHHHhH-hhhchhHHhhhhhhhHHHH
Q 001487 414 K--NLE--QVLSMVLNSFRDPHPRVRWAAINAIGQLS-TDLGPDLQNQFHPQVLPAL 465 (1069)
Q Consensus 414 ~--~~~--~i~~~l~~~l~d~~~~vr~~a~~~l~~l~-~~~~~~~~~~~~~~il~~l 465 (1069)
+ .+. .+++.+...++..++.|-......+..+. ..+...+....++.++..+
T Consensus 293 ~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll~~~~~~~l~~~~W~~~~~i~ 349 (464)
T PF11864_consen 293 PSLPFSPSSVLPSLLNALKSNSPRVDYEILLLINRLLDGKYGRELSEEDWDIILDII 349 (464)
T ss_pred ceecccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHHhHhhhhhhcccCchHHHHHH
Confidence 1 122 48899999999888877777777666666 4444433333444444433
No 142
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=97.39 E-value=0.002 Score=60.97 Aligned_cols=143 Identities=21% Similarity=0.252 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHHHhh-cHHHHHHhHHHHHHH------------HHhhCCCCChhHHHHHHHHHHHhHhhhchhHH----
Q 001487 392 QKHHAALIALAQIAEG-CAKVMVKNLEQVLSM------------VLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQ---- 454 (1069)
Q Consensus 392 ~~r~aal~~l~~l~~~-~~~~~~~~~~~i~~~------------l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~---- 454 (1069)
++|.+|+.+|+.+++. .+..+..|...++|- +.-.+.|+++++|.+|+.++..+.+..++.+.
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~ 80 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEE 80 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 4788999999999887 444555565555542 23356899999999999999998876532210
Q ss_pred ---------------hhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCccccc-CchHHHHHHHHHHhhcCChh
Q 001487 455 ---------------NQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILT-PYLDGIVSKLLVLLQNGKQM 518 (1069)
Q Consensus 455 ---------------~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~-~~l~~i~~~l~~~l~~~~~~ 518 (1069)
...+.++=..|+..+..+.+..+....+.++..++.+.+-+.+. .+++.++..+...+.+.+..
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~ 160 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPN 160 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCc
Confidence 01122233345556666467778888899999888876533332 46788888888899999999
Q ss_pred HHHHHHHHHHHHHHhh
Q 001487 519 VQEGALTALASVADSS 534 (1069)
Q Consensus 519 v~~~al~~l~~l~~~~ 534 (1069)
++..++.++|.+....
T Consensus 161 v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 161 VRVAALSCLGALLSVQ 176 (182)
T ss_pred HHHHHHHHHHHHHcCC
Confidence 9999999999988653
No 143
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=97.38 E-value=0.13 Score=57.62 Aligned_cols=195 Identities=14% Similarity=0.139 Sum_probs=104.6
Q ss_pred CCCHHHHHHHHHHHHhhcccCCCCcccCCCHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCchhhHHH
Q 001487 68 SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPF 147 (1069)
Q Consensus 68 ~~~~~~R~~a~i~L~~~i~~~~~~~w~~l~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~~~~w~~ll~~ 147 (1069)
..+...+++|+..+-+.++. ++ +..+.-.+.++.+..++ +..||..+...|..+++. .+ ...+.+...
T Consensus 33 kg~~k~K~Laaq~I~kffk~-----FP----~l~~~Ai~a~~DLcEDe-d~~iR~~aik~lp~~ck~-~~-~~v~kvaDv 100 (556)
T PF05918_consen 33 KGSPKEKRLAAQFIPKFFKH-----FP----DLQEEAINAQLDLCEDE-DVQIRKQAIKGLPQLCKD-NP-EHVSKVADV 100 (556)
T ss_dssp GS-HHHHHHHHHHHHHHHCC------G----GGHHHHHHHHHHHHT-S-SHHHHHHHHHHGGGG--T----T-HHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhh-----Ch----hhHHHHHHHHHHHHhcc-cHHHHHHHHHhHHHHHHh-HH-HHHhHHHHH
Confidence 45789999999999999876 43 34455556778888874 889999999998888773 22 344788999
Q ss_pred HHHhhcCCChhHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhCCcchHhHHHh
Q 001487 148 MFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQD 227 (1069)
Q Consensus 148 l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ 227 (1069)
|.+++++.++..+...=..|..+....+.. .+..++..+... ... +..+|..+++.|..-+..+....... -.+
T Consensus 101 L~QlL~tdd~~E~~~v~~sL~~ll~~d~k~---tL~~lf~~i~~~-~~~-de~~Re~~lkFl~~kl~~l~~~~~~p-~~E 174 (556)
T PF05918_consen 101 LVQLLQTDDPVELDAVKNSLMSLLKQDPKG---TLTGLFSQIESS-KSG-DEQVRERALKFLREKLKPLKPELLTP-QKE 174 (556)
T ss_dssp HHHHTT---HHHHHHHHHHHHHHHHH-HHH---HHHHHHHHHH----HS--HHHHHHHHHHHHHHGGGS-TTTS----HH
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhcCcHH---HHHHHHHHHHhc-ccC-chHHHHHHHHHHHHHHhhCcHHHhhc-hHH
Confidence 999999988877666666666665543322 122222222211 133 67899999998876655543221110 011
Q ss_pred hHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHcccc-HHHHHhHHHHHHHHHHHh
Q 001487 228 LLPLMMRTLTESLNNGNEATAQEALELLIELAGTEP-RFLRRQLVDVVGSMLQIA 281 (1069)
Q Consensus 228 ~~~~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~-~~~~~~~~~l~~~l~~~~ 281 (1069)
.-..++..+...+++-..+.....+.+|..+-- +. ..-.+....+++.+...+
T Consensus 175 ~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~-~~~~~t~~g~qeLv~ii~eQa 228 (556)
T PF05918_consen 175 MEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKI-YGGKQTIEGRQELVDIIEEQA 228 (556)
T ss_dssp HHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG----GSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhCcc-ccccCChHHHHHHHHHHHHHh
Confidence 222445555555554233333333333332211 10 111234456777666544
No 144
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.34 E-value=0.033 Score=58.88 Aligned_cols=208 Identities=20% Similarity=0.247 Sum_probs=137.3
Q ss_pred hhcCCChHHHHHHHHHHHHHHh--hcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhHhhhc--hhHHhhhhhh
Q 001487 385 YLAAPEWQKHHAALIALAQIAE--GCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLG--PDLQNQFHPQ 460 (1069)
Q Consensus 385 ~l~~~~~~~r~aal~~l~~l~~--~~~~~~~~~~~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~--~~~~~~~~~~ 460 (1069)
.+.+...+.|++++..+..+.. ..++.+......++..+.+.++-....-+..|+.+++.++-.++ ... ...+..
T Consensus 51 ~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~-~ei~~~ 129 (309)
T PF05004_consen 51 LLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDS-EEIFEE 129 (309)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccH-HHHHHH
Confidence 3345668999999999887654 45677778888999999999987777667778888988887755 333 567888
Q ss_pred hHHHHHhhccCCC-ChhHHHHHHHHHHHhhhcC--CcccccCchHHHHHHHHHHh--h----------cCChhHHHHHHH
Q 001487 461 VLPALAGAMDDFQ-NPRVQAHAASAVLNFSENC--TPEILTPYLDGIVSKLLVLL--Q----------NGKQMVQEGALT 525 (1069)
Q Consensus 461 il~~l~~~l~~~~-~~~v~~~a~~al~~l~~~~--~~~~~~~~l~~i~~~l~~~l--~----------~~~~~v~~~al~ 525 (1069)
+.|.|.+.+.+.. .+.+|..++.+|+-.+-.. +.+.+.. .-..+..++... + .+++.+...|+.
T Consensus 130 ~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~-~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~ 208 (309)
T PF05004_consen 130 LKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEE-LMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALS 208 (309)
T ss_pred HHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHH-HHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHH
Confidence 8998888888732 3456677766666544332 2222110 012333222211 1 113568999999
Q ss_pred HHHHHHHhhHh-hhHhhHhhhhHHHHHHHhhccCccccchhhHHHHHHHHHHHhhCh---hhhhhhHHHHHHHHHHH
Q 001487 526 ALASVADSSQE-HFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGK---DKFRDDAKQVMEVLMSL 598 (1069)
Q Consensus 526 ~l~~l~~~~~~-~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~---~~~~~~~~~i~~~l~~l 598 (1069)
+++-++..++. .+..++...+|.|...|.. .+..+|..|-++++.+...... +...+..+.+++.+..+
T Consensus 209 aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s----~d~~VRiAAGEaiAll~E~~~~~~~~~~~~~~~~l~~~l~~L 281 (309)
T PF05004_consen 209 AWALLLTTLPDSKLEDLLEEALPALSELLDS----DDVDVRIAAGEAIALLYELARDHEEDFLYEDMEELLEQLREL 281 (309)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHHHHHhhcccccccccCHHHHHHHHHHH
Confidence 99999987765 4667778888988888764 2456899899998887654431 21233445555554443
No 145
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.34 E-value=1.4 Score=59.36 Aligned_cols=535 Identities=16% Similarity=0.136 Sum_probs=252.0
Q ss_pred HHHHhhhhhhh---hcchhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhCCcchHhHHHhhHHHHHHHHHHHHhC
Q 001487 166 IFAQLSQYIGD---TLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNN 242 (1069)
Q Consensus 166 ~l~~l~~~~~~---~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~ 242 (1069)
++..+|-..+- .+.|+++-++..+..+++. ++++...+++++.-++.......-.+.+....+.+++.|+..+..
T Consensus 700 LfvELclTvPvRLS~Llpylp~LM~PLv~aLkg--s~~lvsQgLRtlelcvDnltPefL~~~mepv~~~lmqaLw~~l~~ 777 (3550)
T KOG0889|consen 700 LFVELCLTLPVRLSSLLPYLPLLMKPLVFALKG--SPELVSQGLRTLELCVDNLTPEFLDPIMEPVRDDLMQALWSHLRP 777 (3550)
T ss_pred HHHHHHHhhhHHHHHhhhhhhhhhhHHHHHhcC--CHHHHHHHHhHHHHHHhcCChHhhhHHHHHHHHHHHHHHHHhccC
Confidence 44444444432 3567888888888888886 688999999999888887632222223444555666777766654
Q ss_pred C-ChHHHHHHHHHHHHHHccccHHHHH-----------------------------hHHHHHHHHHHHhcCCCcchHHHH
Q 001487 243 G-NEATAQEALELLIELAGTEPRFLRR-----------------------------QLVDVVGSMLQIAEAESLEEGTRH 292 (1069)
Q Consensus 243 ~-~~~~~~~~~~~l~~l~~~~~~~~~~-----------------------------~~~~l~~~l~~~~~~~~~~~~~r~ 292 (1069)
. +......|+.+++++...+.+.+.+ .+.+.+......+.....+...|.
T Consensus 778 ~~~~s~s~~a~rILGKlgG~NRq~l~~~q~l~~~~~~~~~~~l~~s~~~~~~~~~lp~~~~i~sA~~~l~s~~~d~~~~~ 857 (3550)
T KOG0889|consen 778 VPNYSYSHRALRILGKLGGRNRQFLKRPQDLEEIDEDDIDIRLVFSFKGLAHPLLLPLSKLIRSAFDALVSPNSDPFYRK 857 (3550)
T ss_pred CCCchHHHHHHHHHHhhcCcchhhcccccccccccCccccceEEEeccccCccccCchHHHHHHHHHHHhCccCCcchHH
Confidence 3 5677788999999988765433211 122333333344433334555666
Q ss_pred HHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHh---hcCCCCCcccccCCCCCccccCCcchhhHHHHHHHHHHHc
Q 001487 293 LAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSM---LLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIAL 369 (1069)
Q Consensus 293 ~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~---l~~~~~~~~~~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~ 369 (1069)
++...+.......-... ..+......+.+..... ..+..+...|.... ......+....-...+..+....
T Consensus 858 qa~~~l~~~~~~~~~~~---~~~~~~~~~l~~~~~~~i~~~~e~~~~n~~~~~~---~~~~~~a~~~~~~~~l~~~~~a~ 931 (3550)
T KOG0889|consen 858 QAFKYLRCDLLLMVNLS---ADFKSSIRQLLTLVVWSIDLRLECCEINLDLTER---YKSQDYSDRSIFVNALISLFYAT 931 (3550)
T ss_pred HHHHHHHHHHHHHHhhh---ccchhhHHHHHHhhcchHHHhhHhhhcccccccc---ccccchhHHHHHHHHHHHHHHHH
Confidence 66665544332110000 01111111122111110 00000000000000 00000000001111111111000
Q ss_pred CCccchHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhc----HHH-------HHHhHHHHHHHHHhhCCCCChhHHHHH
Q 001487 370 GGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGC----AKV-------MVKNLEQVLSMVLNSFRDPHPRVRWAA 438 (1069)
Q Consensus 370 ~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~----~~~-------~~~~~~~i~~~l~~~l~d~~~~vr~~a 438 (1069)
..+++.+...+.+... .|+-++.+.-...... ... ..-.-.-+++.+...+...+..++.++
T Consensus 932 ~~~elr~~a~~~~~~i-------l~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~lD~~i~ldal~~~l~~~~~~~~~~g 1004 (3550)
T KOG0889|consen 932 SCKELRDEAQDFLEAI-------LRHFALHGVVLYTGSNQLKHSNFGSNLQYKKMLDPSTFLDALVESLSHENSEMRPAG 1004 (3550)
T ss_pred hhHHHHhhhHHHHHHH-------HHHHHHHHHHHhhcchhccccccccccccccccCHHHHHHHHHHHHhccchhhhhhH
Confidence 0011222222222111 1111111111111000 000 000112467889999999999999999
Q ss_pred HHHHHHhHhhhch-------hHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHH
Q 001487 439 INAIGQLSTDLGP-------DLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVL 511 (1069)
Q Consensus 439 ~~~l~~l~~~~~~-------~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~i~~~l~~~ 511 (1069)
..++..+...... ....+.+..+++.+++.-.+ +.+.-+...+.+|..+++..+...+..+...++..+...
T Consensus 1005 ~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~-~~wy~k~gG~~gI~~l~~~~~~~~l~d~~~d~~~~l~fv 1083 (3550)
T KOG0889|consen 1005 VRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYD-STWYAKDGGVNGIKCLIESMPSLWLLDFQVDILKALFFV 1083 (3550)
T ss_pred HHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhcc-HhHHHHcCCCceeeeehhhchHHHHHHHHHHHhhhHHHh
Confidence 8888877654321 11124566677777776666 777778888888888888776544555666777777777
Q ss_pred hhcCChhHHH----HHHHHHHHHHHhhHhh-----hH-hhHhhhhHHHHHHHhhccCccccchhhHHHHHHHHHHHhhCh
Q 001487 512 LQNGKQMVQE----GALTALASVADSSQEH-----FQ-KYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGK 581 (1069)
Q Consensus 512 l~~~~~~v~~----~al~~l~~l~~~~~~~-----~~-~~~~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~ 581 (1069)
+.+...++.. .+-.++-.+......+ -. .....+...+..-+-+++ ..+|..+..++..++...|.
T Consensus 1084 l~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~npN----~~VR~~~~~~L~~i~~~s~~ 1159 (3550)
T KOG0889|consen 1084 LKDTESEVSSLPLDEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLVLELFNPN----SDVREFSQKLLRLISELSGK 1159 (3550)
T ss_pred hcCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCc----hHHHHHHHHHHHHHHHHcCC
Confidence 6654322222 2222332222221111 11 112233333333333322 26888899999988887763
Q ss_pred hhhhhhHHHHHHHHHH-HhcCCCC-CCCchhhHHHHHHHHHHHHhcCCcccchhhhhHHH--HHhcccCCCccccCCCCc
Q 001487 582 DKFRDDAKQVMEVLMS-LQGSQME-TDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPL--LQSAQLKPDVTITSADSD 657 (1069)
Q Consensus 582 ~~~~~~~~~i~~~l~~-l~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~l--l~~~~~~~~~~~~~~~~~ 657 (1069)
+ .......+-++++. .....+. -.....-..+.+. ..|...++.+-.+-....... +..+..
T Consensus 1160 ~-v~~L~~p~K~~ll~p~f~k~lr~~p~~~qig~vd~~-~fC~~l~p~~f~~~~~l~~l~~~~~~La~------------ 1225 (3550)
T KOG0889|consen 1160 S-VVKLLEPFKDVLLSPIFKKPLRALPFTIQIGHLDAI-TFCLSLGPCLFDFTEELYRLKRFLIALAD------------ 1225 (3550)
T ss_pred c-HHHHHHHHHHHHhccccccccccCCHHHHhhhHHHH-HHHHHcCCcccCchHHHHHHHHHHHHhhh------------
Confidence 2 33333334443311 1111000 0001111222222 234445665444443333211 111110
Q ss_pred cccccCCCcccchhh-cCCceeeeccchHHHHHHHHHHHHHHHHHhhh---cccccHHHHHHHHhhccCCcCChHHHHHH
Q 001487 658 NEIEDSDDDSMETIT-LGDKRIGIKTSVLEEKATACNMLCCYADELKE---GFFPWIDQVAPTLVPLLKFYFHEEVRKAA 733 (1069)
Q Consensus 658 ~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~k~~a~~~l~~l~~~~~~---~~~p~~~~~~~~l~~~l~~~~~~~ir~~a 733 (1069)
.++++.+. ......+..+.....|..++.+++......+. ...+|-+.++..+++.+... +.++-..+
T Consensus 1226 -------~~~~~~~~i~k~~~~k~~~~l~~Lr~~ci~ll~~~~~~~d~~~~~~~~~r~kii~v~fk~l~~~-~~Ei~~~~ 1297 (3550)
T KOG0889|consen 1226 -------AEEDELATIQKTSDYKNSSSLVRLRVACIKLLAACMKLSDFRTPQHAELREKIIAVFFKSLYKR-SSELIEVA 1297 (3550)
T ss_pred -------hhhhhhhhhhcccccccccccccchhHHHHHHHHHHhcccccchhhhhhhhHHHHHHHHHHcCC-hHHHHHHH
Confidence 11111111 01111222233334577788888877665543 35667788888888887754 77887777
Q ss_pred HHhHHHHHH
Q 001487 734 VSAMPELLR 742 (1069)
Q Consensus 734 ~~~l~~l~~ 742 (1069)
..++.....
T Consensus 1298 ~~~l~~v~~ 1306 (3550)
T KOG0889|consen 1298 LEGLRKVLA 1306 (3550)
T ss_pred HHHHHhhhh
Confidence 777665543
No 146
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=97.25 E-value=0.81 Score=55.07 Aligned_cols=156 Identities=15% Similarity=0.224 Sum_probs=99.4
Q ss_pred CCch--hhHHHHHHhhcCCChhHHHHHHHHHHHhhhhhhhhcc-hhHHHHHHHHH---------HhhcCCCChHHHHHHH
Q 001487 139 NGWP--ELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLT-PHLKHLHAVFL---------NCLTNSNNPDVKIAAL 206 (1069)
Q Consensus 139 ~~w~--~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~-~~~~~l~~~l~---------~~l~~~~~~~vr~~a~ 206 (1069)
.+|| .++..|...+-++.|+.|+++..++..+.+..+..+. ..++.++-.++ ....+..-..||.+..
T Consensus 71 ~~w~f~s~~e~L~~~~~~~~we~rhg~~i~lrei~~~h~~~~~~~~led~~~rll~v~~Ldrf~dfisd~vvapVre~ca 150 (1549)
T KOG0392|consen 71 RQWPFLSFLEELVNDLFEPQWEIRHGAAIALREILKTHGDSLSYELLEDLLIRLLCVLALDRFGDFISDNVVAPVREACA 150 (1549)
T ss_pred ccccHHHHHHHHHHHhcCchhhhhcCcchhhhhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHH
Confidence 4675 6788888888899999999999999999887654432 12222222222 1222222457999999
Q ss_pred HHHHHHHHhhCCcchHhHHHhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHccccHHHHHhHHHHHHHHHHHhcCCCc
Q 001487 207 NAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESL 286 (1069)
Q Consensus 207 ~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 286 (1069)
++|+.+..+.. ...+. ..++.+.+.+..+.++.|...+..+...+......+...+..+++.+...++ +.
T Consensus 151 q~L~~~l~~~~----~s~~~----~~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l~~~~~~vl~~~i~~L~--ds 220 (1549)
T KOG0392|consen 151 QALGAYLKHMD----ESLIK----ETLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLLFQLLNLVLDFVIEGLE--DS 220 (1549)
T ss_pred HHHHHHHHhhh----hHhhH----HHHHHHHHHHcCcchhheechHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--hc
Confidence 99999998862 22222 3444555544455677777766666555443333333444455565665554 45
Q ss_pred chHHHHHHHHHHHHHHHh
Q 001487 287 EEGTRHLAIEFVITLAEA 304 (1069)
Q Consensus 287 ~~~~r~~a~~~l~~l~~~ 304 (1069)
++.++..|..++..++..
T Consensus 221 ~ddv~~~aa~~l~~~~s~ 238 (1549)
T KOG0392|consen 221 DDDVRSVAAQFLVPAPSI 238 (1549)
T ss_pred chHHHHHHHHHhhhhhHH
Confidence 788898888888877764
No 147
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.23 E-value=0.04 Score=62.82 Aligned_cols=220 Identities=15% Similarity=0.207 Sum_probs=150.7
Q ss_pred hcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHH
Q 001487 386 LAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPAL 465 (1069)
Q Consensus 386 l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l 465 (1069)
+.++....|-+|+..+..+++.-...-......++...+..++|.++-|=-.|...+..+|+..+ +.++|.+
T Consensus 736 l~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~--------e~il~dL 807 (982)
T KOG4653|consen 736 LHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYP--------EDILPDL 807 (982)
T ss_pred hcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcc--------hhhHHHH
Confidence 34677888999999999988843222222345688899999999999998888887777776533 3555655
Q ss_pred Hh-hcc--CCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhHhhhHhhH
Q 001487 466 AG-AMD--DFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYY 542 (1069)
Q Consensus 466 ~~-~l~--~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~i~~~l~~~l~~~~~~v~~~al~~l~~l~~~~~~~~~~~~ 542 (1069)
.. ..+ +...++-+...-.++.+++...+ +....|...++..+++.+.+++...|..++..+|.++.........++
T Consensus 808 ~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~G-el~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~ 886 (982)
T KOG4653|consen 808 SEEYLSEKKKLQTDYRLKVGEAILKVAQALG-ELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFF 886 (982)
T ss_pred HHHHHhcccCCCccceehHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHH
Confidence 54 222 21223445556688888888877 456789999999999999999888999999999999987765555567
Q ss_pred hhhhHHHHHHHhhccCccccchhhHHHHHHHHHHHhhChhhhhhhH----HHHHHHHHHHhcCCCCCCCchhhHHHHHHH
Q 001487 543 DAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDA----KQVMEVLMSLQGSQMETDDPTTSYMLQAWA 618 (1069)
Q Consensus 543 ~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~----~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~ 618 (1069)
-++...+.+..+. +....+|..|...+..+..+.| +.+.|.. .+....+..... .+++|.++-.+-.|+.
T Consensus 887 ~ev~~~Il~l~~~---d~s~~vRRaAv~li~~lL~~tg-~dlLpilr~~l~Dl~~tl~~~vr--~~~dd~~klhaql~le 960 (982)
T KOG4653|consen 887 HEVLQLILSLETT---DGSVLVRRAAVHLLAELLNGTG-EDLLPILRLLLIDLDETLLSYVR--QHDDDGLKLHAQLCLE 960 (982)
T ss_pred HHHHHHHHHHHcc---CCchhhHHHHHHHHHHHHhccc-hhhHHHHHHHHHHHHHHHHHHHh--cCchhHHHHHHHHHHH
Confidence 7777777666544 3445688889999999999888 6666643 233333333222 1234444444444544
Q ss_pred HH
Q 001487 619 RL 620 (1069)
Q Consensus 619 ~l 620 (1069)
.+
T Consensus 961 ei 962 (982)
T KOG4653|consen 961 EI 962 (982)
T ss_pred HH
Confidence 44
No 148
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=97.23 E-value=0.00046 Score=43.82 Aligned_cols=30 Identities=33% Similarity=0.664 Sum_probs=26.8
Q ss_pred HHHHHHhhCCCCChhHHHHHHHHHHHhHhh
Q 001487 419 VLSMVLNSFRDPHPRVRWAAINAIGQLSTD 448 (1069)
Q Consensus 419 i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 448 (1069)
++|.+++.++|+++.||.+|+++++.++++
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 578999999999999999999999999875
No 149
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.22 E-value=0.036 Score=64.44 Aligned_cols=147 Identities=20% Similarity=0.232 Sum_probs=102.8
Q ss_pred ChHHHHHHHHHHHHHHhhcHHHHHHhH-HHHHHHHHhhCCCC-ChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHh
Q 001487 390 EWQKHHAALIALAQIAEGCAKVMVKNL-EQVLSMVLNSFRDP-HPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAG 467 (1069)
Q Consensus 390 ~~~~r~aal~~l~~l~~~~~~~~~~~~-~~i~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~ 467 (1069)
+++.|..|...|+.++.+.+..-..-+ ..++...+..++|+ .|..|.=++-|||++-+.+...--.-.-......+..
T Consensus 570 ~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~ 649 (1387)
T KOG1517|consen 570 PPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLIL 649 (1387)
T ss_pred CHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHH
Confidence 368899999999999988654333333 36788888999984 7999999999999998766421101122345566777
Q ss_pred hccCCCChhHHHHHHHHHHHhhhcCCc----c------ccc-----CchHHHHH----HHHHHhhcCChhHHHHHHHHHH
Q 001487 468 AMDDFQNPRVQAHAASAVLNFSENCTP----E------ILT-----PYLDGIVS----KLLVLLQNGKQMVQEGALTALA 528 (1069)
Q Consensus 468 ~l~~~~~~~v~~~a~~al~~l~~~~~~----~------~~~-----~~l~~i~~----~l~~~l~~~~~~v~~~al~~l~ 528 (1069)
.|.| +.++||.+|..||+.|+.+... . .+. .-.+..+. .++..+++.++-+|.+...+++
T Consensus 650 ~LsD-~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls 728 (1387)
T KOG1517|consen 650 LLSD-PVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALS 728 (1387)
T ss_pred HhcC-ccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHH
Confidence 8899 8999999999999999986421 1 000 11222333 5666778888889988888888
Q ss_pred HHHHhhHhh
Q 001487 529 SVADSSQEH 537 (1069)
Q Consensus 529 ~l~~~~~~~ 537 (1069)
.++......
T Consensus 729 ~~~~g~~~~ 737 (1387)
T KOG1517|consen 729 HFVVGYVSH 737 (1387)
T ss_pred HHHHhhHHH
Confidence 877554443
No 150
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=97.22 E-value=0.00049 Score=43.67 Aligned_cols=30 Identities=50% Similarity=0.639 Sum_probs=27.1
Q ss_pred HHHHHHhhccCCChhHHHhhhHHHHHHHhh
Q 001487 924 YLPFLLEACNDENQDVRQAAVYGLGVCAEF 953 (1069)
Q Consensus 924 l~~~ll~~l~~~~~~vr~~a~~~lg~l~~~ 953 (1069)
++|.+++.++|+++.||.+|++++|.+++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 579999999999999999999999999875
No 151
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=97.22 E-value=0.0055 Score=58.01 Aligned_cols=141 Identities=20% Similarity=0.201 Sum_probs=103.5
Q ss_pred hHHHHHHHHHHHHHhcccCC---CCchhhHHHH------------HHhhcCCChhHHHHHHHHHHHhhhhhhhh------
Q 001487 119 SISKKLCDTVSELASNILPE---NGWPELLPFM------------FQCVSSDSVKLQESAFLIFAQLSQYIGDT------ 177 (1069)
Q Consensus 119 ~vr~~~~~~i~~i~~~~~~~---~~w~~ll~~l------------~~~~~~~~~~~r~~al~~l~~l~~~~~~~------ 177 (1069)
.+|..+..++..+++..-++ +.|+.++|.- .-.+.++++.+|.+|+.++..+.+.....
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~ 80 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEE 80 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 37888889999999873332 4788777665 22345778899999999999998764321
Q ss_pred -------cc-------hhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhCCcchHhHHHhhHHHHHHHHHHHHhCC
Q 001487 178 -------LT-------PHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNG 243 (1069)
Q Consensus 178 -------~~-------~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~ 243 (1069)
|. ..+.++...+...+..+.+..+....++|+..++..-+- ...-.++++.++..+...+.+.
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY---~rL~~~ll~~~v~~v~~~l~~~ 157 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPY---HRLPPGLLTEVVTQVRPLLRHR 157 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCCh---hhcCHhHHHHHHHHHHHHHhcC
Confidence 22 234455666677777776788888999999999987542 1222477888888888888888
Q ss_pred ChHHHHHHHHHHHHHHccc
Q 001487 244 NEATAQEALELLIELAGTE 262 (1069)
Q Consensus 244 ~~~~~~~~~~~l~~l~~~~ 262 (1069)
|.+++..++.+++.++...
T Consensus 158 d~~v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 158 DPNVRVAALSCLGALLSVQ 176 (182)
T ss_pred CCcHHHHHHHHHHHHHcCC
Confidence 9999999999999887643
No 152
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.22 E-value=1.1 Score=55.87 Aligned_cols=130 Identities=16% Similarity=0.185 Sum_probs=97.3
Q ss_pred HHHHHHHHHHcCCccchHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHH
Q 001487 359 QECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAA 438 (1069)
Q Consensus 359 ~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~d~~~~vr~~a 438 (1069)
.+.+-.+-...+ +.+-.++|.+...+.+.+-.+|.-|...+|.+.......+....+.++...++.+.|.++.||..+
T Consensus 243 he~i~~L~~~~p--~ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~ 320 (1266)
T KOG1525|consen 243 HELILELWRIAP--QLLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMEC 320 (1266)
T ss_pred HHHHHHHHHhhH--HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhH
Confidence 344444444443 455668899999999999999999999999998766655556778899999999999999999999
Q ss_pred HHHHHHhHhhhch----------------------------------hHHhhhhhhhHHHHHhhccCCCChhHHHHHHHH
Q 001487 439 INAIGQLSTDLGP----------------------------------DLQNQFHPQVLPALAGAMDDFQNPRVQAHAASA 484 (1069)
Q Consensus 439 ~~~l~~l~~~~~~----------------------------------~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~a 484 (1069)
..+...+.-..+. .+...+.+.++..+...+.| ..+.||..|+..
T Consensus 321 v~~~~~~l~~~~~~~~~~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~~l~~~~~ll~~~~eR~rD-Kk~~VR~~Am~~ 399 (1266)
T KOG1525|consen 321 VESIKQCLLNNPSIAKASTILLALRERDLDEDVRVRTQVVIVACDVMKFKLVYIPLLLKLVAERLRD-KKIKVRKQAMNG 399 (1266)
T ss_pred HHHhHHHHhcCchhhhHHHHHHHHHhhcCChhhhheeeEEEEEeehhHhhhhhhHHHHHHHHHHHhh-hhHHHHHHHHHH
Confidence 8887665432210 11112344467777788889 899999999999
Q ss_pred HHHhhhc
Q 001487 485 VLNFSEN 491 (1069)
Q Consensus 485 l~~l~~~ 491 (1069)
|..+-.+
T Consensus 400 LaqlYk~ 406 (1266)
T KOG1525|consen 400 LAQLYKN 406 (1266)
T ss_pred HHHHHHH
Confidence 9888764
No 153
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.13 E-value=0.028 Score=58.03 Aligned_cols=148 Identities=17% Similarity=0.132 Sum_probs=103.2
Q ss_pred CCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhHhhhchhHHhhh-hhhhHHHHH
Q 001487 388 APEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQF-HPQVLPALA 466 (1069)
Q Consensus 388 ~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~~il~~l~ 466 (1069)
+.+...|+.|+.-|..+++.......-+--..+..++..+++.++.+|..|++.+|..+..-+..- ... -...++.|+
T Consensus 94 s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Q-e~v~E~~~L~~Ll 172 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQ-EQVIELGALSKLL 172 (342)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHH-HHHHHcccHHHHH
Confidence 457889999999999888765432211111234455559999999999999999999987754322 222 234777888
Q ss_pred hhccCCCChhHHHHHHHHHHHhhhcCCcccccCchH-HHHHHHHHHhhc--CChhHHHHHHHHHHHHHHhhHhh
Q 001487 467 GAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLD-GIVSKLLVLLQN--GKQMVQEGALTALASVADSSQEH 537 (1069)
Q Consensus 467 ~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~-~i~~~l~~~l~~--~~~~v~~~al~~l~~l~~~~~~~ 537 (1069)
..+...++..+|..|..|+..++.+..+.. ..++. .=+..|..++++ .+...+..++..++.+......+
T Consensus 173 ~~ls~~~~~~~r~kaL~AissLIRn~~~g~-~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~ 245 (342)
T KOG2160|consen 173 KILSSDDPNTVRTKALFAISSLIRNNKPGQ-DEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSD 245 (342)
T ss_pred HHHccCCCchHHHHHHHHHHHHHhcCcHHH-HHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhh
Confidence 888764566788999999999999876431 11111 115677778877 56778888999999998776543
No 154
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.12 E-value=0.4 Score=54.59 Aligned_cols=342 Identities=15% Similarity=0.188 Sum_probs=191.2
Q ss_pred HHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCC---CCchhhHHHHHHhhcCCChhHHHHHHHHHHHhhhhhh--
Q 001487 101 QSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPE---NGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIG-- 175 (1069)
Q Consensus 101 ~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~~---~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~-- 175 (1069)
..+-...|...+.+.+-..-|+.++..+-.+++.+-.. ...+.++..|..- -.|++....++.++..+..+-.
T Consensus 20 ~aETI~kLcDRvessTL~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D--~~D~E~ik~~LdTl~il~~~dd~~ 97 (970)
T KOG0946|consen 20 AAETIEKLCDRVESSTLLEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRD--YMDPEIIKYALDTLLILTSHDDSP 97 (970)
T ss_pred HHhHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhc--cCCHHHHHHHHHHHHHHHhcCcch
Confidence 34555677777776667778999999999988864221 2334444433332 2356677778888877765431
Q ss_pred ---------hh----cch---hHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhCCcchHhHHHhhHHHHHHHHHHH
Q 001487 176 ---------DT----LTP---HLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTES 239 (1069)
Q Consensus 176 ---------~~----~~~---~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~ 239 (1069)
++ +++ .-...+..++..+... +..||..+++.+.+++...+.. .....-..|.-+..+...
T Consensus 98 ~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~-DF~VR~~aIqLlsalls~r~~e--~q~~ll~~P~gIS~lmdl 174 (970)
T KOG0946|consen 98 EVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEF-DFHVRLYAIQLLSALLSCRPTE--LQDALLVSPMGISKLMDL 174 (970)
T ss_pred hhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhh-chhhhhHHHHHHHHHHhcCCHH--HHHHHHHCchhHHHHHHH
Confidence 01 111 1134567777777776 8999999999999999875321 111223356667777777
Q ss_pred HhCCChHHHHHHHHHHHHHHccccHHHHH-hHHHHHHHHHHHhcCCC-cch-HHHHHHHHHHHHHHHhhhccchhhhcch
Q 001487 240 LNNGNEATAQEALELLIELAGTEPRFLRR-QLVDVVGSMLQIAEAES-LEE-GTRHLAIEFVITLAEARERAPGMMRKLP 316 (1069)
Q Consensus 240 l~~~~~~~~~~~~~~l~~l~~~~~~~~~~-~~~~l~~~l~~~~~~~~-~~~-~~r~~a~~~l~~l~~~~~~~~~~~~~~~ 316 (1069)
+.+..+-+|..++-.|.++++.++..-.- -+..+++.++.++.... .+. -+..-|+.++..+.+........++.
T Consensus 175 L~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE-- 252 (970)
T KOG0946|consen 175 LRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFRE-- 252 (970)
T ss_pred HhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhc--
Confidence 87888889999999999999877542111 13355666666664432 333 35667888888888842111111111
Q ss_pred hhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCcchhh-----HHHHHHHHHHHcCCcc------------chHHHH
Q 001487 317 QFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSV-----GQECLDRLAIALGGNT------------IVPVAS 379 (1069)
Q Consensus 317 ~~~~~l~~~l~~~l~~~~~~~~~~~~~~e~ed~~~~~~~~~-----a~~~l~~l~~~~~~~~------------~~~~l~ 379 (1069)
...+|.+...+....-.+ ++...|+..++ +...+..+. +|.. ....++
T Consensus 253 ---~~~i~rL~klL~~f~~~d---------~Ev~~W~~Qrv~Nv~~~Lqivr~lV---sP~Nt~~~~~q~qk~l~ss~ll 317 (970)
T KOG0946|consen 253 ---GSYIPRLLKLLSVFEFGD---------GEVFGWSTQRVQNVIEALQIVRSLV---SPGNTSSITHQNQKALVSSHLL 317 (970)
T ss_pred ---cccHHHHHhhcCcccccC---------cccccccHHHHHHHHHHHHHHHHhc---CCCCcHHHHHHHHHHHHHcchH
Confidence 224455554443221110 01113333332 333333332 2210 112344
Q ss_pred HHHHHhhcCC--ChHHHHHHHHHHHHHHhhcHH---HHH----HhHH----HHHHHHHhhCCCC-ChhHHHHHHHHHHHh
Q 001487 380 EQLPAYLAAP--EWQKHHAALIALAQIAEGCAK---VMV----KNLE----QVLSMVLNSFRDP-HPRVRWAAINAIGQL 445 (1069)
Q Consensus 380 ~~l~~~l~~~--~~~~r~aal~~l~~l~~~~~~---~~~----~~~~----~i~~~l~~~l~d~-~~~vr~~a~~~l~~l 445 (1069)
..+...+-++ ...++..++..++.++.++.. .+. ++.+ .|+=.+....... .+..|.++++|+..+
T Consensus 318 ~~Lc~il~~~~vp~dIltesiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~ 397 (970)
T KOG0946|consen 318 DVLCTILMHPGVPADILTESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSY 397 (970)
T ss_pred HHHHHHHcCCCCcHhHHHHHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 4455555444 467788888888888877653 121 1222 2333344444444 456789999998776
Q ss_pred HhhhchhHHhhhhhhhHHHH
Q 001487 446 STDLGPDLQNQFHPQVLPAL 465 (1069)
Q Consensus 446 ~~~~~~~~~~~~~~~il~~l 465 (1069)
.-.- ......++..++|.-
T Consensus 398 l~dN-~~gq~~~l~tllp~~ 416 (970)
T KOG0946|consen 398 LYDN-DDGQRKFLKTLLPSS 416 (970)
T ss_pred Hhcc-hhhHHHHHHHHhhhh
Confidence 5322 112234555555543
No 155
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=97.11 E-value=0.18 Score=56.58 Aligned_cols=294 Identities=14% Similarity=0.184 Sum_probs=134.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHhhccCCcCChHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHH
Q 001487 684 VLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQ 763 (1069)
Q Consensus 684 ~~~~k~~a~~~l~~l~~~~~~~~~p~~~~~~~~l~~~l~~~~~~~ir~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 763 (1069)
..++|..|.+.+..+... |...-++.+..++.++.|. +..||..|++.|+.+++. .++
T Consensus 35 ~~k~K~Laaq~I~kffk~----FP~l~~~Ai~a~~DLcEDe-d~~iR~~aik~lp~~ck~-----------------~~~ 92 (556)
T PF05918_consen 35 SPKEKRLAAQFIPKFFKH----FPDLQEEAINAQLDLCEDE-DVQIRKQAIKGLPQLCKD-----------------NPE 92 (556)
T ss_dssp -HHHHHHHHHHHHHHHCC-----GGGHHHHHHHHHHHHT-S-SHHHHHHHHHHGGGG--T-------------------T
T ss_pred CHHHHHHHHHHHHHHHhh----ChhhHHHHHHHHHHHHhcc-cHHHHHHHHHhHHHHHHh-----------------HHH
Confidence 356788888888877653 4444577888888888876 889999999999998763 123
Q ss_pred HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCCCChHhh
Q 001487 764 LSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEES 843 (1069)
Q Consensus 764 ~~~~i~~~l~~~~~~~~~~~v~~~~l~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~e~~d~~~~ 843 (1069)
++..+...|.+.+..|. +..+..+=.++..++..- ....+..++..+... .
T Consensus 93 ~v~kvaDvL~QlL~tdd-~~E~~~v~~sL~~ll~~d----~k~tL~~lf~~i~~~--~---------------------- 143 (556)
T PF05918_consen 93 HVSKVADVLVQLLQTDD-PVELDAVKNSLMSLLKQD----PKGTLTGLFSQIESS--K---------------------- 143 (556)
T ss_dssp -HHHHHHHHHHHTT----HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHH---------------------------
T ss_pred HHhHHHHHHHHHHhccc-HHHHHHHHHHHHHHHhcC----cHHHHHHHHHHHHhc--c----------------------
Confidence 44555556666666653 333334445555555442 112222233222110 0
Q ss_pred hHhhhhhhhHHHHHHHHHHHHHHHHHHhhhchhh---hHHH-HHhhhhhhhcCCCCHHHHHHHHHHHHHHHhHhhhhhhh
Q 001487 844 ELIKEENEQEEEVFDQVGEILGTLIKTFKAAFLP---FFDE-LSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALK 919 (1069)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~---~~~~-l~~~l~~~l~~~~~~~~r~~a~~~l~~l~~~~~~~~~~ 919 (1069)
..++.+|..+..+|..=...++..... -.+. +...+.+.+ .+-+...-...+.+|+.+-.+.+.....
T Consensus 144 -------~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~i~~~ikkvL-~DVTaeEF~l~m~lL~~lk~~~~~~t~~ 215 (556)
T PF05918_consen 144 -------SGDEQVRERALKFLREKLKPLKPELLTPQKEMEEFIVDEIKKVL-QDVTAEEFELFMSLLKSLKIYGGKQTIE 215 (556)
T ss_dssp -------HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHHHHHHHHHHHC-TT--HHHHHHHHHHHHTSGG---GSSHH
T ss_pred -------cCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHhCccccccCChH
Confidence 012234444555554333333333322 1111 334444444 3334444444444444443221111122
Q ss_pred hhHhHHHHHHhhcc------CCChhHHHhhhHHHHHHHhhcC--CCchHHHHHHHHHHHHhhcCCCCCChhhhhhHHHHH
Q 001487 920 YYETYLPFLLEACN------DENQDVRQAAVYGLGVCAEFGG--SVVKPLVGEALSRLNVVIRHPNALQPENLMAYDNAV 991 (1069)
Q Consensus 920 ~~~~l~~~ll~~l~------~~~~~vr~~a~~~lg~l~~~~~--~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~ 991 (1069)
-..++++.+.+... ..|+..-...+.|+-....... ..-..++..+...+.+.+..= ....+-..+
T Consensus 216 g~qeLv~ii~eQa~Ld~~f~~sD~e~Idrli~C~~~Alp~fs~~v~Sskfv~y~~~kvlP~l~~l------~e~~kl~lL 289 (556)
T PF05918_consen 216 GRQELVDIIEEQADLDQPFDPSDPESIDRLISCLRQALPFFSRGVSSSKFVNYMCEKVLPKLSDL------PEDRKLDLL 289 (556)
T ss_dssp HHHHHHHHHHHHHTTTS---SSSHHHHHHHHHHHHHHGGG-BTTB--HHHHHHHHHHTCCCTT-----------HHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCCCcCHHHHHHHHHHHHHhhHHhcCCCChHHHHHHHHHHhcCChhhC------ChHHHHHHH
Confidence 34456666654432 2344544455555555433322 122344444444444433221 234566788
Q ss_pred HHHHHHHhhcCCCCCHhhHHH----HHHhhCCCCCc-H----HHHHHHHHHHHHHHhhcCC
Q 001487 992 SALGKICQFHRDSIDAAQVVP----AWLNCLPIKGD-L----IEAKIVHEQLCSMVERSDS 1043 (1069)
Q Consensus 992 ~~l~~i~~~~~~~~~~~~~~~----~~l~~lp~~~d-~----~~~~~~~~~l~~l~~~~~~ 1043 (1069)
.+++.++.+.... ...+.+| .++..||.... . ...+..+-.+..|..+.|+
T Consensus 290 k~lAE~s~~~~~~-d~~~~L~~i~~~L~~ymP~~~~~~~l~fs~vEcLL~afh~La~k~p~ 349 (556)
T PF05918_consen 290 KLLAELSPFCGAQ-DARQLLPSIFQLLKKYMPSKKTEPKLQFSYVECLLYAFHQLARKSPN 349 (556)
T ss_dssp HHHHHHHTT-----THHHHHHHHHHHHHTTS----------HHHHHHHHHHHHHHHTT-TH
T ss_pred HHHHHHcCCCCcc-cHHHHHHHHHHHHHHhCCCCCCCCcccchHhhHHHHHHHHHhhhCcc
Confidence 8888888877643 2444554 44556786531 2 3345666666777766654
No 156
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.10 E-value=0.81 Score=52.21 Aligned_cols=116 Identities=12% Similarity=0.134 Sum_probs=79.8
Q ss_pred hhhHHHHHHhhcCCChhHHHHHHHHHHHhhhhhhhhcch---hHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhCC
Q 001487 142 PELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTP---HLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTS 218 (1069)
Q Consensus 142 ~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~---~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~ 218 (1069)
++.+..+.+.+...|-.+|..++..+..+....+..+.. ..+.=+..++..|.|. .+.+|..++-.|..++..-+.
T Consensus 121 qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~Ds-rE~IRNe~iLlL~eL~k~n~~ 199 (970)
T KOG0946|consen 121 QDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDS-REPIRNEAILLLSELVKDNSS 199 (970)
T ss_pred chhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhh-hhhhchhHHHHHHHHHccCch
Confidence 577888888888888899999999999999887766443 2344455667778887 889999999999888875432
Q ss_pred cchHhHHHhhHHHHHHHHHHHHhCC---C-hHHHHHHHHHHHHHHccc
Q 001487 219 SADRDRFQDLLPLMMRTLTESLNNG---N-EATAQEALELLIELAGTE 262 (1069)
Q Consensus 219 ~~~~~~~~~~~~~~l~~l~~~l~~~---~-~~~~~~~~~~l~~l~~~~ 262 (1069)
....-.|. .....|+..+..+ | .-+...|+..+..+.+..
T Consensus 200 IQKlVAFE----NaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N 243 (970)
T KOG0946|consen 200 IQKLVAFE----NAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNN 243 (970)
T ss_pred HHHHHHHH----HHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhC
Confidence 11122233 3445555555422 1 245677888888888754
No 157
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=97.09 E-value=0.43 Score=50.27 Aligned_cols=154 Identities=13% Similarity=0.107 Sum_probs=97.9
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHH---HHH-HhHHHHHHHHHh-hCCCCChhHHHHHHHHHHHhHhhhc
Q 001487 376 PVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAK---VMV-KNLEQVLSMVLN-SFRDPHPRVRWAAINAIGQLSTDLG 450 (1069)
Q Consensus 376 ~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~---~~~-~~~~~i~~~l~~-~l~d~~~~vr~~a~~~l~~l~~~~~ 450 (1069)
|.++.++..++.|.+.....++..++|.+++.-.. .+. ..+..++..+.+ --.|.+..++.+++.+|..+.--.+
T Consensus 314 p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~ 393 (604)
T KOG4500|consen 314 PQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVS 393 (604)
T ss_pred cHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCC
Confidence 55888999999999999999999999999975443 222 234455555554 3346788888999999998864332
Q ss_pred hhHHhhhh-hhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCc--ccccCchHHHHHHHHHHhhcCChh-HHHHHHHH
Q 001487 451 PDLQNQFH-PQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTP--EILTPYLDGIVSKLLVLLQNGKQM-VQEGALTA 526 (1069)
Q Consensus 451 ~~~~~~~~-~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~--~~~~~~l~~i~~~l~~~l~~~~~~-v~~~al~~ 526 (1069)
.. ..+. ..+.+.++..++. ..|.|.-.-...+..+.+.... ..+ .--+.++..|.....+++.. +-......
T Consensus 394 nk--a~~~~aGvteaIL~~lk~-~~ppv~fkllgTlrM~~d~qe~~a~eL-~kn~~l~ekLv~Wsks~D~aGv~gESnRl 469 (604)
T KOG4500|consen 394 NK--AHFAPAGVTEAILLQLKL-ASPPVTFKLLGTLRMIRDSQEYIACEL-AKNPELFEKLVDWSKSPDFAGVAGESNRL 469 (604)
T ss_pred ch--hhccccchHHHHHHHHHh-cCCcchHHHHHHHHHHHhchHHHHHHH-hcCHHHHHHHHHhhhCCccchhhhhhhHH
Confidence 22 1222 3466777778877 6777777766776665543220 001 11235567777666666543 55555555
Q ss_pred HHHHHHh
Q 001487 527 LASVADS 533 (1069)
Q Consensus 527 l~~l~~~ 533 (1069)
+.-++++
T Consensus 470 l~~lIkH 476 (604)
T KOG4500|consen 470 LLGLIKH 476 (604)
T ss_pred HHHHHHh
Confidence 5555554
No 158
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=97.03 E-value=0.021 Score=57.94 Aligned_cols=186 Identities=17% Similarity=0.201 Sum_probs=119.3
Q ss_pred HHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCch--hhHHHHHHhhcCCChhHHHHHHHHHHHhhhhhhhh--cchh
Q 001487 106 SMLLQSIQLESAKSISKKLCDTVSELASNILPENGWP--ELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDT--LTPH 181 (1069)
Q Consensus 106 ~~ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~~~~w~--~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~--~~~~ 181 (1069)
+.|+..|....++.++..+..+++..+......+.+. ..++.+...+.++++.+|..|+.++..+....... +..+
T Consensus 15 ~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~ 94 (254)
T PF04826_consen 15 QKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMY 94 (254)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHH
Confidence 4677888866789999999999998876544333333 46889999999999999999999999887764432 3345
Q ss_pred HHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhCCcchHhHHHhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHcc
Q 001487 182 LKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGT 261 (1069)
Q Consensus 182 ~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~~ 261 (1069)
+++++..+.. .+-+..++.+++++|..+.-.. .....+...+| .+..++..++...+..++++|..+.++
T Consensus 95 i~~Vc~~~~s---~~lns~~Q~agLrlL~nLtv~~---~~~~~l~~~i~----~ll~LL~~G~~~~k~~vLk~L~nLS~n 164 (254)
T PF04826_consen 95 IPQVCEETVS---SPLNSEVQLAGLRLLTNLTVTN---DYHHMLANYIP----DLLSLLSSGSEKTKVQVLKVLVNLSEN 164 (254)
T ss_pred HHHHHHHHhc---CCCCCHHHHHHHHHHHccCCCc---chhhhHHhhHH----HHHHHHHcCChHHHHHHHHHHHHhccC
Confidence 5555544433 2235689999999999885331 12233344444 445556677889999999999988874
Q ss_pred ccHHHHHhHH-HHHHHHHHHhcCCCcchHHHHHHHHHHHHHHH
Q 001487 262 EPRFLRRQLV-DVVGSMLQIAEAESLEEGTRHLAIEFVITLAE 303 (1069)
Q Consensus 262 ~~~~~~~~~~-~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~ 303 (1069)
. ...+..+. +....++.++.. +...++...++.++..+.+
T Consensus 165 p-~~~~~Ll~~q~~~~~~~Lf~~-~~~~~~l~~~l~~~~ni~~ 205 (254)
T PF04826_consen 165 P-DMTRELLSAQVLSSFLSLFNS-SESKENLLRVLTFFENINE 205 (254)
T ss_pred H-HHHHHHHhccchhHHHHHHcc-CCccHHHHHHHHHHHHHHH
Confidence 3 22222211 223333333332 2345555556666666655
No 159
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.01 E-value=0.62 Score=49.26 Aligned_cols=353 Identities=14% Similarity=0.099 Sum_probs=174.7
Q ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHHhhcccCCC--CcccCCCHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHh
Q 001487 56 SLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDS--FLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELAS 133 (1069)
Q Consensus 56 ~~~~~L~~il~~~~~~~~R~~a~i~L~~~i~~~~~--~~w~~l~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~i~~ 133 (1069)
.++..++++++....++.-+....++--++..... ..+.......+.-.-...+..|.+ .+..+.+..+.+++.++.
T Consensus 65 ~~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r-~d~~iv~~~~~Ils~la~ 143 (442)
T KOG2759|consen 65 QYVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNR-QDTFIVEMSFRILSKLAC 143 (442)
T ss_pred HHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhc-CChHHHHHHHHHHHHHHH
Confidence 45677888888766677777777777777766410 000000111111122346667776 577788878889998887
Q ss_pred ccc---CCCCchhhHHHHHHhhcC-CChhHHHHHHHHHHHhhhhhh--hhc--chhHHHHHHHHHHhhcCCCChHHHHHH
Q 001487 134 NIL---PENGWPELLPFMFQCVSS-DSVKLQESAFLIFAQLSQYIG--DTL--TPHLKHLHAVFLNCLTNSNNPDVKIAA 205 (1069)
Q Consensus 134 ~~~---~~~~w~~ll~~l~~~~~~-~~~~~r~~al~~l~~l~~~~~--~~~--~~~~~~l~~~l~~~l~~~~~~~vr~~a 205 (1069)
.-. +.+...-....+...+++ .++.-+..+..||..+...-. ..+ ..-+..+++.+. +...+..++...
T Consensus 144 ~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~---s~~~~~QlQYqs 220 (442)
T KOG2759|consen 144 FGNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILA---STKCGFQLQYQS 220 (442)
T ss_pred hccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHh---ccCcchhHHHHH
Confidence 421 112334455667666665 455566677778877765321 111 112333444443 222366777777
Q ss_pred HHHHHHHHHhhCCcchH-hHHHhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHccccHH--HHHhHHHH----HHHHH
Q 001487 206 LNAVINFIQCLTSSADR-DRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRF--LRRQLVDV----VGSML 278 (1069)
Q Consensus 206 ~~~l~~l~~~~~~~~~~-~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~--~~~~~~~l----~~~l~ 278 (1069)
+-|+-.+.-. +.... -...++++.+.+.+.... .+.+...++..+..++...+.. ...+.... ++..+
T Consensus 221 ifciWlLtFn--~~~ae~~~~~~li~~L~~Ivk~~~---KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l 295 (442)
T KOG2759|consen 221 IFCIWLLTFN--PHAAEKLKRFDLIQDLSDIVKEST---KEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTL 295 (442)
T ss_pred HHHHHHhhcC--HHHHHHHhhccHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHH
Confidence 6666443311 00000 011244555555555433 4566777778888887766421 11111111 12223
Q ss_pred HHhcCCC-cchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCcchhh
Q 001487 279 QIAEAES-LEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSV 357 (1069)
Q Consensus 279 ~~~~~~~-~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~e~ed~~~~~~~~~ 357 (1069)
+.+.... .|++++ ..++++..-.+.+-+. ...+..|...+....+ +|...-.+ ..-|+-
T Consensus 296 ~~L~~rkysDEDL~-~di~~L~e~L~~svq~---LsSFDeY~sEl~sG~L----------~WSP~Hk~------e~FW~e 355 (442)
T KOG2759|consen 296 QSLEERKYSDEDLV-DDIEFLTEKLKNSVQD---LSSFDEYKSELRSGRL----------EWSPVHKS------EKFWRE 355 (442)
T ss_pred HHHHhcCCCcHHHH-HHHHHHHHHHHHHHHh---hccHHHHHHHHHhCCc----------CCCccccc------cchHHH
Confidence 3332222 233333 3455555444321000 0011122222222111 23221110 001211
Q ss_pred HHHHHHHHHHHcCCccchHHHHHHHHHhhc-CCChHHHHHHHHHHHHHHhhcHHHHHHhHH--HHHHHHHhhCCCCChhH
Q 001487 358 GQECLDRLAIALGGNTIVPVASEQLPAYLA-APEWQKHHAALIALAQIAEGCAKVMVKNLE--QVLSMVLNSFRDPHPRV 434 (1069)
Q Consensus 358 a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-~~~~~~r~aal~~l~~l~~~~~~~~~~~~~--~i~~~l~~~l~d~~~~v 434 (1069)
-... +- +.= -.++..+...++ +.++..-..|+.=+|..++..|+... .+. .--..+++.+++++|.|
T Consensus 356 Na~r---ln-----enn-yellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~-vv~k~ggKe~vM~Llnh~d~~V 425 (442)
T KOG2759|consen 356 NADR---LN-----ENN-YELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKA-VVEKYGGKERVMNLLNHEDPEV 425 (442)
T ss_pred hHHH---Hh-----hcc-HHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhH-HHHHhchHHHHHHHhcCCCchH
Confidence 1111 11 111 124444555555 34577777788888888887765221 111 12356788999999999
Q ss_pred HHHHHHHHHHhHh
Q 001487 435 RWAAINAIGQLST 447 (1069)
Q Consensus 435 r~~a~~~l~~l~~ 447 (1069)
|..|+.|+..+..
T Consensus 426 ry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 426 RYHALLAVQKLMV 438 (442)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999887653
No 160
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=96.95 E-value=0.88 Score=49.97 Aligned_cols=296 Identities=13% Similarity=0.123 Sum_probs=155.4
Q ss_pred ChHHHHHHHHHHHHHHHhhCCcchHhHHHhhHHHHHHHHHHHHhC-------CChHHHHHHHHHHHHHHcccc--HHHHH
Q 001487 198 NPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNN-------GNEATAQEALELLIELAGTEP--RFLRR 268 (1069)
Q Consensus 198 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~-------~~~~~~~~~~~~l~~l~~~~~--~~~~~ 268 (1069)
+..-|..|...|........+..+...+.+.++.+++.+..-+.. .+......|+++++.+..+.. +.+..
T Consensus 6 ~~~~r~daY~~l~~~l~~~~~~~~~~~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~~~l~~ 85 (372)
T PF12231_consen 6 DRSSRLDAYMTLNNALKAYDNLPDRQALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIVSTLSD 85 (372)
T ss_pred CcHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHHhhCCh
Confidence 445566677667766666544444566677777777777765544 255677888999988775321 11111
Q ss_pred hH-HHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCc
Q 001487 269 QL-VDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDE 347 (1069)
Q Consensus 269 ~~-~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~e~e 347 (1069)
.. ..++...+..+.++..+..+....+.++. . .+..+... .......++..
T Consensus 86 d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls---~-Q~f~~~~~--~~~~~~~l~~~---------------------- 137 (372)
T PF12231_consen 86 DFASFIIDHSIESLQNPNSPKSICTHYLWCLS---D-QKFSPKIM--TSDRVERLLAA---------------------- 137 (372)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH---c-CCCCCccc--chhhHHHHHHH----------------------
Confidence 11 12455555555444444444444433332 1 00000000 00011111111
Q ss_pred cccCCcchhhHHHHHHHHHHHcCCccchHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhC
Q 001487 348 DAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSF 427 (1069)
Q Consensus 348 d~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~i~~~l~~~l 427 (1069)
+..+-..++ ...+-...+.++..+....+..+..+...-++.++..+
T Consensus 138 --------------l~~i~~~~~-------------------s~si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l 184 (372)
T PF12231_consen 138 --------------LHNIKNRFP-------------------SKSIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDL 184 (372)
T ss_pred --------------HHHhhccCC-------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111111 12222334556666777777777777777788888888
Q ss_pred CCCChhHHHHHHHHHHHhHhhhchhHH---------------hhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcC
Q 001487 428 RDPHPRVRWAAINAIGQLSTDLGPDLQ---------------NQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENC 492 (1069)
Q Consensus 428 ~d~~~~vr~~a~~~l~~l~~~~~~~~~---------------~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~ 492 (1069)
-+....+|..|..++..+...+++... ..+.+.+.+.+...+.+..+.......-.++..+....
T Consensus 185 ~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~ 264 (372)
T PF12231_consen 185 LSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENGKLIQLYCERLKEMIKSKDEYKLAMQIWSVVILLLGSS 264 (372)
T ss_pred hhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccccHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHhCCc
Confidence 888888898877766666555543210 01122233334444444112222222333333343321
Q ss_pred CcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhHhhh---HhhHhhhhHHHHHHHhh
Q 001487 493 TPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHF---QKYYDAVMPFLKAILVN 555 (1069)
Q Consensus 493 ~~~~~~~~l~~i~~~l~~~l~~~~~~v~~~al~~l~~l~~~~~~~~---~~~~~~i~~~l~~~l~~ 555 (1069)
. -.-.+++...+.....+++++++.+|..|+.+...++.....+. .+.+.-++.++...++.
T Consensus 265 ~-~~~w~~~n~wL~v~e~cFn~~d~~~k~~A~~aW~~liy~~~~~~~~~~k~l~lL~~Pl~~~l~~ 329 (372)
T PF12231_consen 265 R-LDSWEHLNEWLKVPEKCFNSSDPQVKIQAFKAWRRLIYASNPNELTSPKRLKLLCQPLSSQLRR 329 (372)
T ss_pred h-hhccHhHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHhCc
Confidence 1 12347888888888899999999999999999999998654321 23344444444444433
No 161
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=96.93 E-value=0.013 Score=54.80 Aligned_cols=92 Identities=18% Similarity=0.126 Sum_probs=75.1
Q ss_pred HHHhhhhhhhcCCCCHHHHHHHHHHHHHHHhH-hhhhhhhhhHhHHHHHHhhccCCChhHHHhhhHHHHHH---HhhcCC
Q 001487 881 ELSSYLTPMWGKDKTAEERRIAICIFDDVAEQ-CREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVC---AEFGGS 956 (1069)
Q Consensus 881 ~l~~~l~~~l~~~~~~~~r~~a~~~l~~l~~~-~~~~~~~~~~~l~~~ll~~l~~~~~~vr~~a~~~lg~l---~~~~~~ 956 (1069)
..+|.+..-++. ....-+-.|...+.++++. .++.+.|.++++++.+-.++...++.|..++..+|..+ ....|+
T Consensus 38 ~~Lpif~dGL~E-t~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~ 116 (183)
T PF10274_consen 38 HYLPIFFDGLRE-TEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGE 116 (183)
T ss_pred hHHHHHHhhhhc-cCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhH
Confidence 356666655533 2334578889999999999 77888999999999999999999999999999999999 445567
Q ss_pred CchHHHHHHHHHHHHhh
Q 001487 957 VVKPLVGEALSRLNVVI 973 (1069)
Q Consensus 957 ~~~~~~~~~l~~L~~~l 973 (1069)
.+.||+.++++.+.-..
T Consensus 117 aLvPyyrqLLp~ln~f~ 133 (183)
T PF10274_consen 117 ALVPYYRQLLPVLNLFK 133 (183)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 89999999999996443
No 162
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=96.88 E-value=0.012 Score=55.19 Aligned_cols=147 Identities=14% Similarity=0.135 Sum_probs=95.5
Q ss_pred chHHHHHHHHHhhcC-CChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCC-----CCChhHHHHHHHHHHHhHh
Q 001487 374 IVPVASEQLPAYLAA-PEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFR-----DPHPRVRWAAINAIGQLST 447 (1069)
Q Consensus 374 ~~~~l~~~l~~~l~~-~~~~~r~aal~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~-----d~~~~vr~~a~~~l~~l~~ 447 (1069)
-.|.+++.+.+.++. .+|..|..++..+|.+.---+.... .+..... +.+........ ...
T Consensus 7 ~yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k--------~~~~~~~~~~~~~~~~~~~~~~l-----~~~ 73 (160)
T PF11865_consen 7 DYPELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHK--------SIQKSLDSKSSENSNDESTDISL-----PMM 73 (160)
T ss_pred HhHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHh--------cccccCCccccccccccchhhHH-----hhc
Confidence 357788888887775 4699999999999987643221111 1111111 11111122111 111
Q ss_pred hhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHH
Q 001487 448 DLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTAL 527 (1069)
Q Consensus 448 ~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~i~~~l~~~l~~~~~~v~~~al~~l 527 (1069)
...+...+-|...++..|++.|+|..-..-+..+..++..++...+... .||++.++|.++..+.+.....++..+.-+
T Consensus 74 ~~~~~~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~c-v~~L~~viP~~l~~i~~~~~~~~e~~~~qL 152 (160)
T PF11865_consen 74 GISPSSEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKC-VPYLPQVIPIFLRVIRTCPDSLREFYFQQL 152 (160)
T ss_pred cCCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCc-hhHHHHHhHHHHHHHHhCCHHHHHHHHHHH
Confidence 2222221335567788899999983334455678888888888777665 799999999999999988889999988888
Q ss_pred HHHHHhh
Q 001487 528 ASVADSS 534 (1069)
Q Consensus 528 ~~l~~~~ 534 (1069)
+.++...
T Consensus 153 ~~lv~iv 159 (160)
T PF11865_consen 153 ADLVSIV 159 (160)
T ss_pred HHHHHHh
Confidence 8887643
No 163
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=96.86 E-value=0.014 Score=50.37 Aligned_cols=97 Identities=18% Similarity=0.294 Sum_probs=78.8
Q ss_pred ccCchHHHHHHHHHHhhc----CChhHHHHHHHHHHHHHHhhHhhhHhhHhhhhHHHHHHHhhccCccccchhhHHHHHH
Q 001487 497 LTPYLDGIVSKLLVLLQN----GKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECI 572 (1069)
Q Consensus 497 ~~~~l~~i~~~l~~~l~~----~~~~v~~~al~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l 572 (1069)
+.+++=.++..+-..+++ .+..-|..++.+++.+++..++.+..+.++++..|...+..+ .++..+++|+
T Consensus 5 L~~~~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~------~l~~~al~~W 78 (107)
T PF08064_consen 5 LQPHILGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP------ELREEALSCW 78 (107)
T ss_pred HHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh------hhHHHHHHHH
Confidence 445555666666666666 456788899999999999888888889999998888887542 5888999999
Q ss_pred HHHHHhhChhhhhhhHHHHHHHHHHHh
Q 001487 573 SLVGMAVGKDKFRDDAKQVMEVLMSLQ 599 (1069)
Q Consensus 573 ~~l~~~~~~~~~~~~~~~i~~~l~~l~ 599 (1069)
..+.+.++.+.+.|.+.+++-.++...
T Consensus 79 ~~fi~~L~~~~l~~ll~~~~~~l~~~~ 105 (107)
T PF08064_consen 79 NCFIKTLDEEDLGPLLDQIFAILLPLW 105 (107)
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999888877643
No 164
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=96.77 E-value=0.59 Score=51.01 Aligned_cols=261 Identities=22% Similarity=0.236 Sum_probs=147.4
Q ss_pred HHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhCCcchHhHHHhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHcccc
Q 001487 184 HLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEP 263 (1069)
Q Consensus 184 ~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~ 263 (1069)
...+.+...+.+. +..+|..+...++.+-.. ..+..+...+.+.++.+|..+..+++.+-.
T Consensus 43 ~~~~~~~~~l~~~-~~~vr~~aa~~l~~~~~~---------------~av~~l~~~l~d~~~~vr~~a~~aLg~~~~--- 103 (335)
T COG1413 43 EAADELLKLLEDE-DLLVRLSAAVALGELGSE---------------EAVPLLRELLSDEDPRVRDAAADALGELGD--- 103 (335)
T ss_pred hhHHHHHHHHcCC-CHHHHHHHHHHHhhhchH---------------HHHHHHHHHhcCCCHHHHHHHHHHHHccCC---
Confidence 4456677778887 899999998875533321 234445556667888999999887776532
Q ss_pred HHHHHhHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCC
Q 001487 264 RFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAE 343 (1069)
Q Consensus 264 ~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~ 343 (1069)
+..++.++..+.. +.+..+|..+...+..+... .- +..++..+.+......+...
T Consensus 104 -------~~a~~~li~~l~~-d~~~~vR~~aa~aL~~~~~~------------~a----~~~l~~~l~~~~~~~a~~~~- 158 (335)
T COG1413 104 -------PEAVPPLVELLEN-DENEGVRAAAARALGKLGDE------------RA----LDPLLEALQDEDSGSAAAAL- 158 (335)
T ss_pred -------hhHHHHHHHHHHc-CCcHhHHHHHHHHHHhcCch------------hh----hHHHHHHhccchhhhhhhhc-
Confidence 1223333343332 45778898888777665441 11 22233333222110000000
Q ss_pred CCCccccCCcchhhHHHHHHHHHHHcCCccchHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHH
Q 001487 344 TEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMV 423 (1069)
Q Consensus 344 ~e~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~i~~~l 423 (1069)
....+......+..+... | .+...+.+...+.+.+..+|.++..+++.+.... ..+.+.+
T Consensus 159 -------~~~~~~~r~~a~~~l~~~-~----~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~--------~~~~~~l 218 (335)
T COG1413 159 -------DAALLDVRAAAAEALGEL-G----DPEAIPLLIELLEDEDADVRRAAASALGQLGSEN--------VEAADLL 218 (335)
T ss_pred -------cchHHHHHHHHHHHHHHc-C----ChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch--------hhHHHHH
Confidence 001111222223333311 1 2344566667778888899999999999877543 4566777
Q ss_pred HhhCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHH
Q 001487 424 LNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDG 503 (1069)
Q Consensus 424 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~ 503 (1069)
...+.|+++.+|..++..++.+. .....+.+...+.+ .++.++..+..++. .. ....
T Consensus 219 ~~~~~~~~~~vr~~~~~~l~~~~-----------~~~~~~~l~~~l~~-~~~~~~~~~~~~~~----~~-------~~~~ 275 (335)
T COG1413 219 VKALSDESLEVRKAALLALGEIG-----------DEEAVDALAKALED-EDVILALLAAAALG----AL-------DLAE 275 (335)
T ss_pred HHHhcCCCHHHHHHHHHHhcccC-----------cchhHHHHHHHHhc-cchHHHHHHHHHhc----cc-------Cchh
Confidence 88889999999999998887643 23445556666666 56666555544433 11 1111
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHHHHHH
Q 001487 504 IVSKLLVLLQNGKQMVQEGALTALASVA 531 (1069)
Q Consensus 504 i~~~l~~~l~~~~~~v~~~al~~l~~l~ 531 (1069)
-...+...+.+....++..+...++.+.
T Consensus 276 ~~~~l~~~~~~~~~~~~~~~~~~l~~~~ 303 (335)
T COG1413 276 AALPLLLLLIDEANAVRLEAALALGQIG 303 (335)
T ss_pred hHHHHHHHhhcchhhHHHHHHHHHHhhc
Confidence 2233444455555666666555555544
No 165
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=96.68 E-value=0.021 Score=48.64 Aligned_cols=95 Identities=15% Similarity=0.245 Sum_probs=77.0
Q ss_pred ccCchHHHHHHHHHHhhcCC----hhHHHHHHHHHHHHHHhhHhhhHhhHhhhhHHHHHHHhhccCccccchhhHHHHHH
Q 001487 497 LTPYLDGIVSKLLVLLQNGK----QMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECI 572 (1069)
Q Consensus 497 ~~~~l~~i~~~l~~~l~~~~----~~v~~~al~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l 572 (1069)
+.+++=.++..+-..+++.+ ..-|..++.+++.+++.+|+.+..+.++++..|...+.. ..+|..+++|+
T Consensus 5 L~~~~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~------~eL~~~al~~W 78 (107)
T smart00802 5 LKDHFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALEI------PELRSLALRCW 78 (107)
T ss_pred HHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc------hhHHHHHHHHH
Confidence 44566667777777776654 245889999999999999988888999999998888754 24899999999
Q ss_pred HHHHHhhChhhhhhhHHHHHHHHHH
Q 001487 573 SLVGMAVGKDKFRDDAKQVMEVLMS 597 (1069)
Q Consensus 573 ~~l~~~~~~~~~~~~~~~i~~~l~~ 597 (1069)
..+.+.+..+.+.|.+.+++..++.
T Consensus 79 ~~~i~~L~~~~l~~ll~~~~~~i~~ 103 (107)
T smart00802 79 HVLIKTLKEEELGPLLDQIFAAILP 103 (107)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 9999999988888888888777765
No 166
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.61 E-value=0.19 Score=56.10 Aligned_cols=219 Identities=12% Similarity=0.170 Sum_probs=127.8
Q ss_pred CCCHHHHHHHHHHHHhhcccCCCCcccCCCHHHHHHHHHHHHHHHhhc----chhhHHHHHHHHHHHHHhcccCCCCchh
Q 001487 68 SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLE----SAKSISKKLCDTVSELASNILPENGWPE 143 (1069)
Q Consensus 68 ~~~~~~R~~a~i~L~~~i~~~~~~~w~~l~~~~~~~i~~~ll~~l~~e----~~~~vr~~~~~~i~~i~~~~~~~~~w~~ 143 (1069)
.+......++.++++. |...+-+.+++|.+-.++.+... +...+....-++++.++..---.....+
T Consensus 99 l~ks~~~~~geI~frA---------Wkea~~dL~eeiE~d~iq~~~~haiha~rsp~~sk~r~Vl~~F~hqkk~~qgVee 169 (1005)
T KOG1949|consen 99 LQKSLMVYIGEIYFRA---------WKEASGDLLEEIENDCIQDFMFHAIHAPRSPVHSKVREVLSYFHHQKKVRQGVEE 169 (1005)
T ss_pred ccHHHHHHHhHHHHHH---------HHHhccchHHHHhhhHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 4556777788888876 87666666777777777766542 2223333334455555543211122333
Q ss_pred hH-----HHHHHhhcCCChhHHHHHHHHHHHhhhhhhhhc-chhHHH----HHHHHHHhhcCCCChHHHHHHHHHHHHHH
Q 001487 144 LL-----PFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTL-TPHLKH----LHAVFLNCLTNSNNPDVKIAALNAVINFI 213 (1069)
Q Consensus 144 ll-----~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~-~~~~~~----l~~~l~~~l~~~~~~~vr~~a~~~l~~l~ 213 (1069)
++ |-+...++.+|.++|..|..++-.+.--.+++. ++..+. =...+...|.|+ -+.||..|++-+..++
T Consensus 170 ml~rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~-~p~VRS~a~~gv~k~~ 248 (1005)
T KOG1949|consen 170 MLYRLYKPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDP-YPMVRSTAILGVCKIT 248 (1005)
T ss_pred HHHHHHhHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHH
Confidence 33 667778888999999999988876654443333 122333 334567788897 9999999988887776
Q ss_pred HhhCCcchHhHHHhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHccccHHHHHhHHHHHHHHHHHhcCCCcchHHHHH
Q 001487 214 QCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHL 293 (1069)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~ 293 (1069)
..+=.-.....+.+++..+...+ ..+...++|...++++..++.+... -+.+..+++.+-..+ .|..+.+|..
T Consensus 249 s~fWe~iP~~i~~~ll~kI~d~~---a~dt~s~VR~svf~gl~~~l~np~s--h~~le~~Lpal~~~l--~D~se~VRvA 321 (1005)
T KOG1949|consen 249 SKFWEMIPPTILIDLLKKITDEL---AFDTSSDVRCSVFKGLPMILDNPLS--HPLLEQLLPALRYSL--HDNSEKVRVA 321 (1005)
T ss_pred HHHHHHcCHHHHHHHHHHHHHHh---hhccchheehhHhcCcHHHHcCccc--hhHHHHHHHhcchhh--hccchhHHHH
Confidence 54200001111222222222222 2244568999999999988865422 122333333222222 2456889998
Q ss_pred HHHHHHHHHH
Q 001487 294 AIEFVITLAE 303 (1069)
Q Consensus 294 a~~~l~~l~~ 303 (1069)
+.+++..+-.
T Consensus 322 ~vd~ll~ik~ 331 (1005)
T KOG1949|consen 322 FVDMLLKIKA 331 (1005)
T ss_pred HHHHHHHHHh
Confidence 8888876644
No 167
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=96.60 E-value=1 Score=49.23 Aligned_cols=254 Identities=20% Similarity=0.234 Sum_probs=147.5
Q ss_pred hhhHHHHHHhhcCCChhHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhCCcch
Q 001487 142 PELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSAD 221 (1069)
Q Consensus 142 ~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~ 221 (1069)
+...+.+.+.+.+++..+|..+...++.+- ....++.+...+.+. ++.||..|+.+++.+-..
T Consensus 42 ~~~~~~~~~~l~~~~~~vr~~aa~~l~~~~----------~~~av~~l~~~l~d~-~~~vr~~a~~aLg~~~~~------ 104 (335)
T COG1413 42 PEAADELLKLLEDEDLLVRLSAAVALGELG----------SEEAVPLLRELLSDE-DPRVRDAAADALGELGDP------ 104 (335)
T ss_pred hhhHHHHHHHHcCCCHHHHHHHHHHHhhhc----------hHHHHHHHHHHhcCC-CHHHHHHHHHHHHccCCh------
Confidence 456778888888888888888887755332 345567777888887 889999998877644321
Q ss_pred HhHHHhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHccccHHHHHhHHHHHHHHHHHhcCCC----------cchHHH
Q 001487 222 RDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAES----------LEEGTR 291 (1069)
Q Consensus 222 ~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~----------~~~~~r 291 (1069)
..++.+++.+.. +.+..+|..+...|..+..... +. .+ +..+.+.. ....+|
T Consensus 105 -----~a~~~li~~l~~---d~~~~vR~~aa~aL~~~~~~~a--~~----~l----~~~l~~~~~~~a~~~~~~~~~~~r 166 (335)
T COG1413 105 -----EAVPPLVELLEN---DENEGVRAAAARALGKLGDERA--LD----PL----LEALQDEDSGSAAAALDAALLDVR 166 (335)
T ss_pred -----hHHHHHHHHHHc---CCcHhHHHHHHHHHHhcCchhh--hH----HH----HHHhccchhhhhhhhccchHHHHH
Confidence 123334443332 5788899999888887654321 11 12 22222111 011344
Q ss_pred HHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCcchhhHHHHHHHHHHHcCC
Q 001487 292 HLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGG 371 (1069)
Q Consensus 292 ~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~ 371 (1069)
..+...+..+.. +...+.+...+... ....+..+...+..+....
T Consensus 167 ~~a~~~l~~~~~----------------~~~~~~l~~~l~~~-----------------~~~vr~~Aa~aL~~~~~~~-- 211 (335)
T COG1413 167 AAAAEALGELGD----------------PEAIPLLIELLEDE-----------------DADVRRAAASALGQLGSEN-- 211 (335)
T ss_pred HHHHHHHHHcCC----------------hhhhHHHHHHHhCc-----------------hHHHHHHHHHHHHHhhcch--
Confidence 444443333322 11222222222211 1123344555555444211
Q ss_pred ccchHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhHhhhch
Q 001487 372 NTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGP 451 (1069)
Q Consensus 372 ~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 451 (1069)
..+.+.+...+.+++|.+|..++..++.+.. ....+.+...+.+.++.++..+...++.
T Consensus 212 ----~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~----------~~~~~~l~~~l~~~~~~~~~~~~~~~~~------- 270 (335)
T COG1413 212 ----VEAADLLVKALSDESLEVRKAALLALGEIGD----------EEAVDALAKALEDEDVILALLAAAALGA------- 270 (335)
T ss_pred ----hhHHHHHHHHhcCCCHHHHHHHHHHhcccCc----------chhHHHHHHHHhccchHHHHHHHHHhcc-------
Confidence 3456777888999999999999999886543 3445666677888888887776665541
Q ss_pred hHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhc
Q 001487 452 DLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSEN 491 (1069)
Q Consensus 452 ~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~ 491 (1069)
.........+...+.+ ....++..+..++..+...
T Consensus 271 ----~~~~~~~~~l~~~~~~-~~~~~~~~~~~~l~~~~~~ 305 (335)
T COG1413 271 ----LDLAEAALPLLLLLID-EANAVRLEAALALGQIGQE 305 (335)
T ss_pred ----cCchhhHHHHHHHhhc-chhhHHHHHHHHHHhhccc
Confidence 1122333444555566 6777888787777666443
No 168
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.56 E-value=0.21 Score=53.06 Aligned_cols=167 Identities=19% Similarity=0.227 Sum_probs=104.5
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhHhhhchhHHhhh--
Q 001487 380 EQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQF-- 457 (1069)
Q Consensus 380 ~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~-- 457 (1069)
..+...+.+.+..+|+.|+.++|..+--..+.-. +.++.+...++..+..||..|+.++..+....+.......
T Consensus 30 ~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~----~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~ 105 (298)
T PF12719_consen 30 SLILPAVQSSDPAVRELALKCLGLCCLLDKELAK----EHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESD 105 (298)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHH----HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhc
Confidence 4455788899999999999999987755443333 3444555555556899999999999988877665442222
Q ss_pred ------hhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhc----CChhHHHHHHHHH
Q 001487 458 ------HPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQN----GKQMVQEGALTAL 527 (1069)
Q Consensus 458 ------~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~i~~~l~~~l~~----~~~~v~~~al~~l 527 (1069)
...++..+.+.+.+ .++.++..++..+..+.-... +.+ -+.++..|+-..=+ .+..+|...-..+
T Consensus 106 ~~~~~~~~~l~~~l~~~l~~-~~~~~~~~a~EGl~KLlL~~~---i~~-~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ff 180 (298)
T PF12719_consen 106 NDESVDSKSLLKILTKFLDS-ENPELQAIAVEGLCKLLLSGR---ISD-PPKVLSRLLLLYFNPSTEDNQRLRQCLSVFF 180 (298)
T ss_pred cCccchHhHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHhcCC---CCc-HHHHHHHHHHHHcCcccCCcHHHHHHHHHHH
Confidence 34688888889988 788999999999988765432 111 34455555443322 2344443333333
Q ss_pred HHHHHhhHhhhHhhHhhhhHHHHHHHhh
Q 001487 528 ASVADSSQEHFQKYYDAVMPFLKAILVN 555 (1069)
Q Consensus 528 ~~l~~~~~~~~~~~~~~i~~~l~~~l~~ 555 (1069)
...+.....+-.-..+.++|.+...+..
T Consensus 181 p~y~~s~~~~Q~~l~~~f~~~l~~~~~~ 208 (298)
T PF12719_consen 181 PVYASSSPENQERLAEAFLPTLRTLSNA 208 (298)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHHhC
Confidence 3344333333333445555666555544
No 169
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=96.52 E-value=0.054 Score=56.72 Aligned_cols=167 Identities=17% Similarity=0.209 Sum_probs=112.5
Q ss_pred CChHHHHHHH-HHHHHHHh-hc-HHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhHhhhchhH---Hh--hhhhh
Q 001487 389 PEWQKHHAAL-IALAQIAE-GC-AKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDL---QN--QFHPQ 460 (1069)
Q Consensus 389 ~~~~~r~aal-~~l~~l~~-~~-~~~~~~~~~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~---~~--~~~~~ 460 (1069)
+.|+...+.. ..+..++. .. ...+..+++-++|.++..+.|.++.+|..++.++..+.+.++... .. ...+.
T Consensus 87 ~~WK~~~~~~~~~l~w~v~~~~~~~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v 166 (282)
T PF10521_consen 87 QPWKSNPGLASHVLSWIVLSQLDRPWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSV 166 (282)
T ss_pred CCcccCCcccHHHHHHHHHhcCCcchHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHH
Confidence 3455444222 34444333 22 236778899999999999999999999999999999998776433 11 22444
Q ss_pred hHHHHHhhcc--------CCCChhHHHHHHHHHHHhhhcCCcccccCc---hHHHH-HHHHHHhhc----CChhHHHHHH
Q 001487 461 VLPALAGAMD--------DFQNPRVQAHAASAVLNFSENCTPEILTPY---LDGIV-SKLLVLLQN----GKQMVQEGAL 524 (1069)
Q Consensus 461 il~~l~~~l~--------~~~~~~v~~~a~~al~~l~~~~~~~~~~~~---l~~i~-~~l~~~l~~----~~~~v~~~al 524 (1069)
+.+.+..++- + ....+-..+..++..++.......-.++ +..++ +.+++.+.. +...++...+
T Consensus 167 ~~~al~~~L~~LP~~tp~~-~s~~Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll 245 (282)
T PF10521_consen 167 FEDALFPCLYYLPPITPED-ESLELLQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLL 245 (282)
T ss_pred HHHHHHHHhhcCCCCCCch-hhHHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHH
Confidence 5555555554 3 4566777888888888654211111122 32222 324443332 2478889999
Q ss_pred HHHHHHHHhhHhhhHhhHhhhhHHHHHHHhhc
Q 001487 525 TALASVADSSQEHFQKYYDAVMPFLKAILVNA 556 (1069)
Q Consensus 525 ~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~ 556 (1069)
..+..++..+|.....|++.+++.+.+.+.++
T Consensus 246 ~~l~~~i~~lGi~~~~hL~rii~~l~~~l~np 277 (282)
T PF10521_consen 246 QQLPPIIDELGISSVKHLQRIIPVLSQILENP 277 (282)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999988764
No 170
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=96.50 E-value=1.6 Score=47.85 Aligned_cols=72 Identities=17% Similarity=0.177 Sum_probs=50.5
Q ss_pred hhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcc-cccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHH
Q 001487 459 PQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPE-ILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVA 531 (1069)
Q Consensus 459 ~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~-~~~~~l~~i~~~l~~~l~~~~~~v~~~al~~l~~l~ 531 (1069)
-.++..|.+.|....++.+-.-||.=++.+++..+.. .+..-+. .=..+..++++++++||..|+.|++.+.
T Consensus 352 ~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg-~K~~vM~Lm~h~d~~Vr~eAL~avQklm 424 (429)
T cd00256 352 YELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLG-GKQRVMRLLNHEDPNVRYEALLAVQKLM 424 (429)
T ss_pred hHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcC-cHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 4577777777754356777788899999999887421 1111111 2345677889999999999999998774
No 171
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.48 E-value=2.8 Score=49.49 Aligned_cols=167 Identities=13% Similarity=0.069 Sum_probs=98.3
Q ss_pred CCCCHHHHHHHHHHHHHH---HhHhhhhhhhhhHhHHHHHHhhccCCChhHHHhhhHHHHHHHhhcCCCch-HHHHHHHH
Q 001487 892 KDKTAEERRIAICIFDDV---AEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVK-PLVGEALS 967 (1069)
Q Consensus 892 ~~~~~~~r~~a~~~l~~l---~~~~~~~~~~~~~~l~~~ll~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~-~~~~~~l~ 967 (1069)
.+.+...|.-++.++..- .....+...|.+++.+|.++.++.++++-+-..|+.|+-.+...+|+-+. .+...++|
T Consensus 813 S~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgDFv~sR~l~dvlP 892 (1014)
T KOG4524|consen 813 SHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGDFVASRFLEDVLP 892 (1014)
T ss_pred cchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344555666677666543 33445566788999999999999999999999999999999999997433 34555566
Q ss_pred HHHHhhcCCCCCChhhhhhHHHHHHHHH-HHHhhcCCC--------CCHhhHHHHHHhhCCCCCcHHHHHHHHHHHHHHH
Q 001487 968 RLNVVIRHPNALQPENLMAYDNAVSALG-KICQFHRDS--------IDAAQVVPAWLNCLPIKGDLIEAKIVHEQLCSMV 1038 (1069)
Q Consensus 968 ~L~~~l~~~~~~~~~~~~~~~~~~~~l~-~i~~~~~~~--------~~~~~~~~~~l~~lp~~~d~~~~~~~~~~l~~l~ 1038 (1069)
.+...++..-.+.-..+.-.+.+..-++ +++...+.. .++..+.....-.+-...+.+..+.++.+|..++
T Consensus 893 ~l~~~~~~~~~~~~~~~~~~qta~yKlq~k~i~~~~~~v~~l~l~~~~l~~v~e~~~I~l~~~~~q~Lqe~~~s~F~~~V 972 (1014)
T KOG4524|consen 893 WLKHLCQDSFARTILKELRIQTAEYKLQLKSISKLVKFVPYLELAGVSLHMVAEGVKIYLSLIQPQVLQEIARSCFLDLV 972 (1014)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCCCcceeeecccccHHHHhhhhhhhHHhcChHHHHHHHHHHHHHHh
Confidence 6554443221000000111112222221 122222222 1455555555544555556666778888888888
Q ss_pred hhcCCcccCcCc--CChhHHHH
Q 001487 1039 ERSDSDLLGPNH--QYLPKIVS 1058 (1069)
Q Consensus 1039 ~~~~~~~~~~~~--~~~~~i~~ 1058 (1069)
...+|..+...+ .|.|++..
T Consensus 973 ~~ekp~~i~~~~~~lh~~~~~~ 994 (1014)
T KOG4524|consen 973 PVEKPQRISSMSLRLHEPDIVW 994 (1014)
T ss_pred ccCCCcccchhhhhcCchhhhh
Confidence 777766655422 24444443
No 172
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.44 E-value=2.4 Score=52.73 Aligned_cols=100 Identities=16% Similarity=0.141 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHHHHhhhchhhhHHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHHhHhhhhhhhhhHhHHHHHHhhccCC
Q 001487 856 VFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACNDE 935 (1069)
Q Consensus 856 ~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~l~~~ll~~l~~~ 935 (1069)
+-..+.-|++..+...+.++.|+..+++ ... .+++...|..|+..+..+....|+.+...+++++|.+-+.+.|.
T Consensus 1520 v~~~li~~i~~~~~a~~~d~~pl~~k~l----~~t-rss~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL~ED~ 1594 (1621)
T KOG1837|consen 1520 VSKLLIAEIASDSVADKDDLKPLNQKIL----KKT-RSSSRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAELMEDE 1594 (1621)
T ss_pred HHHHHHHHHHhhccCChhhhHHHHHHHH----HHh-ccccHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHHHhhh
Confidence 3344556666666666666666555533 333 35667889999999999999999999999999999999999999
Q ss_pred ChhHHHhhhHHHHHHHhhcCCCchH
Q 001487 936 NQDVRQAAVYGLGVCAEFGGSVVKP 960 (1069)
Q Consensus 936 ~~~vr~~a~~~lg~l~~~~~~~~~~ 960 (1069)
+.+|...+...+.++=...|+.+..
T Consensus 1595 ~~~Ve~~~q~li~q~e~~lGE~l~~ 1619 (1621)
T KOG1837|consen 1595 DDEVECLCQKLIRQLEEVLGEPLQS 1619 (1621)
T ss_pred HHHHHHHHHHHHHHHHHHhchhhhh
Confidence 9999888887777777776764443
No 173
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=96.43 E-value=1.5 Score=48.37 Aligned_cols=242 Identities=16% Similarity=0.110 Sum_probs=144.8
Q ss_pred HHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCCChhHHHHHHHHHHHhhhhhhhhcchhHH
Q 001487 104 LKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLK 183 (1069)
Q Consensus 104 i~~~ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~ 183 (1069)
....++..+....+..++..++..+. . ..-+..+..++..+.++++.+|..+...|+.+- ..
T Consensus 55 a~~~L~~aL~~d~~~ev~~~aa~al~---~-----~~~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~----------~~ 116 (410)
T TIGR02270 55 ATELLVSALAEADEPGRVACAALALL---A-----QEDALDLRSVLAVLQAGPEGLCAGIQAALGWLG----------GR 116 (410)
T ss_pred HHHHHHHHHhhCCChhHHHHHHHHHh---c-----cCChHHHHHHHHHhcCCCHHHHHHHHHHHhcCC----------ch
Confidence 34566777754456666664433332 1 111334888999999999999999999998543 23
Q ss_pred HHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhCCcchHhHHHhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHcccc
Q 001487 184 HLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEP 263 (1069)
Q Consensus 184 ~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~ 263 (1069)
...+.+...+.+. ++.||..++.+++..-. + -.+.+...+++.++.++..++.+++.+.....
T Consensus 117 ~a~~~L~~~L~~~-~p~vR~aal~al~~r~~--------~--------~~~~L~~~L~d~d~~Vra~A~raLG~l~~~~a 179 (410)
T TIGR02270 117 QAEPWLEPLLAAS-EPPGRAIGLAALGAHRH--------D--------PGPALEAALTHEDALVRAAALRALGELPRRLS 179 (410)
T ss_pred HHHHHHHHHhcCC-ChHHHHHHHHHHHhhcc--------C--------hHHHHHHHhcCCCHHHHHHHHHHHHhhccccc
Confidence 3445667777887 89999998877765111 1 11234444568899999999999998764211
Q ss_pred HHHHHhHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCC
Q 001487 264 RFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAE 343 (1069)
Q Consensus 264 ~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~ 343 (1069)
.+. +...+ .+.+..+|..|+..+..+.. ...++.+.......
T Consensus 180 ------~~~----L~~al--~d~~~~VR~aA~~al~~lG~----------------~~A~~~l~~~~~~~---------- 221 (410)
T TIGR02270 180 ------EST----LRLYL--RDSDPEVRFAALEAGLLAGS----------------RLAWGVCRRFQVLE---------- 221 (410)
T ss_pred ------hHH----HHHHH--cCCCHHHHHHHHHHHHHcCC----------------HhHHHHHHHHHhcc----------
Confidence 111 22223 35688999999887754422 11122222211111
Q ss_pred CCCccccCCcchhhHHHHHHHHHHHcCCccchHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHH
Q 001487 344 TEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMV 423 (1069)
Q Consensus 344 ~e~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~i~~~l 423 (1069)
+. . ........++. .|. +..++.+...++++. +|.+++.++|.+... ..++.+
T Consensus 222 -------g~-~--~~~~l~~~lal-~~~----~~a~~~L~~ll~d~~--vr~~a~~AlG~lg~p----------~av~~L 274 (410)
T TIGR02270 222 -------GG-P--HRQRLLVLLAV-AGG----PDAQAWLRELLQAAA--TRREALRAVGLVGDV----------EAAPWC 274 (410)
T ss_pred -------Cc-c--HHHHHHHHHHh-CCc----hhHHHHHHHHhcChh--hHHHHHHHHHHcCCc----------chHHHH
Confidence 00 0 11111111211 132 245666677777654 899999999976542 356677
Q ss_pred HhhCCCCChhHHHHHHHHHHHhHh
Q 001487 424 LNSFRDPHPRVRWAAINAIGQLST 447 (1069)
Q Consensus 424 ~~~l~d~~~~vr~~a~~~l~~l~~ 447 (1069)
+..+.|+. ++..|.++++.+..
T Consensus 275 ~~~l~d~~--~aR~A~eA~~~ItG 296 (410)
T TIGR02270 275 LEAMREPP--WARLAGEAFSLITG 296 (410)
T ss_pred HHHhcCcH--HHHHHHHHHHHhhC
Confidence 77777665 89999999888763
No 174
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.41 E-value=3.1 Score=49.16 Aligned_cols=73 Identities=14% Similarity=0.121 Sum_probs=53.7
Q ss_pred hhHHHHHHhhcCCChhHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhh
Q 001487 143 ELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCL 216 (1069)
Q Consensus 143 ~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~ 216 (1069)
..++.++....++++.+|+.-+.....+.......+....-.++..++..-+++ +++++....+.+..+...+
T Consensus 278 ~~~~~~~~~~~~~~~~v~~aL~d~~~~Ll~~C~~sL~~c~~~llesll~L~ndE-n~ki~~~~~~~l~~~~eq~ 350 (1014)
T KOG4524|consen 278 IALKAIIPLRKHNNESVREALADFVSILLTRCENSLNNCEKHLLESLVHLENDE-NPKLPSHCVKLLEVLNEQL 350 (1014)
T ss_pred HHHHhhhhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHH
Confidence 345555666667788888877777776666666666655666777777777886 9999999999988887765
No 175
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=96.39 E-value=2.4 Score=47.74 Aligned_cols=472 Identities=13% Similarity=0.064 Sum_probs=225.5
Q ss_pred CCHHHHHHHHHHHHhhcccCCCCcccCCCHHHHHHHHHHHHHHHhhc-chhhHHHHHHHHHHHHHhcccCCCCc-----h
Q 001487 69 PHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLE-SAKSISKKLCDTVSELASNILPENGW-----P 142 (1069)
Q Consensus 69 ~~~~~R~~a~i~L~~~i~~~~~~~w~~l~~~~~~~i~~~ll~~l~~e-~~~~vr~~~~~~i~~i~~~~~~~~~w-----~ 142 (1069)
.+++..--|....|+.+.-+.. .-.+-.+..-...++..+..+ .....+...+.+++..+..+- +.. .
T Consensus 21 ~dpe~lvrai~~~kN~vig~~~----~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eq--d~v~svL~~ 94 (678)
T KOG1293|consen 21 LDPEQLVRAIYMSKNLVIGFTD----NKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQ--DKVDSVLRI 94 (678)
T ss_pred CCHHHHHHHHHHhcchhhcCCC----ccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhcc--chHHHHHHH
Confidence 3455444477777777665411 111112222223444444443 233455667777777765421 222 2
Q ss_pred hhHHHHHHhhcCCC-hhHHHHHHHHHHHhhhhhhhh---cchhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhCC
Q 001487 143 ELLPFMFQCVSSDS-VKLQESAFLIFAQLSQYIGDT---LTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTS 218 (1069)
Q Consensus 143 ~ll~~l~~~~~~~~-~~~r~~al~~l~~l~~~~~~~---~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~ 218 (1069)
..++.+++++.+++ ...+++.+.+++.+.+..+.. ...+...+++.+.-.+..+.....+..+ ..+.+.+.
T Consensus 95 ~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~-----~~~a~~s~ 169 (678)
T KOG1293|consen 95 IELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDV-----SRAAHLSS 169 (678)
T ss_pred hhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhhhhhhhhhh-----hhhccccc
Confidence 45688899999888 789999999999999875321 2235566666665544422011122111 11222211
Q ss_pred cchHhH--HHhhHHHHHHHHHHHHhCCChHHHHHHHHHHH---HHHccccHHHHHhHHH-----HHH--HHHHHhcCCCc
Q 001487 219 SADRDR--FQDLLPLMMRTLTESLNNGNEATAQEALELLI---ELAGTEPRFLRRQLVD-----VVG--SMLQIAEAESL 286 (1069)
Q Consensus 219 ~~~~~~--~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~l~---~l~~~~~~~~~~~~~~-----l~~--~l~~~~~~~~~ 286 (1069)
....+. +.. .+.+.+.-+....+...|.+++.++. .++.+.+..-...+.. +.+ ...++..++
T Consensus 170 ~~~hq~Il~Na---~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~-- 244 (678)
T KOG1293|consen 170 TKDHQLILCNA---GILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDP-- 244 (678)
T ss_pred cchhhheeccc---cchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCC--
Confidence 111111 111 12222222222224577888888888 5555544322221111 111 112223333
Q ss_pred chHHHHHHHHHHHHHHHhhh-ccchh-hhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCcchhhHHHHHHH
Q 001487 287 EEGTRHLAIEFVITLAEARE-RAPGM-MRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDR 364 (1069)
Q Consensus 287 ~~~~r~~a~~~l~~l~~~~~-~~~~~-~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~e~ed~~~~~~~~~a~~~l~~ 364 (1069)
+.+.|..+++++..+.+... +.|-. ...+.+...+.+-.. .++. ...++.|...+ .....-|+..
T Consensus 245 ~~s~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~-~~i~-l~~~P~~s~l~-----------~~~~l~c~~a 311 (678)
T KOG1293|consen 245 DFSERLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQY-NCIV-LMNDPGLSTLD-----------HTNVLFCILA 311 (678)
T ss_pred CccHHHHHHHHHHHHHhccccccccccceeeccCchHHHHHH-hhhe-eecCCceeehh-----------hhhhhHHHHH
Confidence 34445666677666665321 11100 001111111111100 0000 01122222110 0011111111
Q ss_pred -HHHHcC----CccchHHHHHHHH--HhhcCCChHHHHHHHHHH---HHHHhhcHHHHHHhHHH--HHHHHHhhCCCCCh
Q 001487 365 -LAIALG----GNTIVPVASEQLP--AYLAAPEWQKHHAALIAL---AQIAEGCAKVMVKNLEQ--VLSMVLNSFRDPHP 432 (1069)
Q Consensus 365 -l~~~~~----~~~~~~~l~~~l~--~~l~~~~~~~r~aal~~l---~~l~~~~~~~~~~~~~~--i~~~l~~~l~d~~~ 432 (1069)
+..... .....+...+++. .-++....+.|.-++.-. .....+......+++.. ....+.......+.
T Consensus 312 ~~~sklq~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~ 391 (678)
T KOG1293|consen 312 RFASKLQLPQHEEATLKTTTELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDH 391 (678)
T ss_pred HHHHhhhhHHhhhhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccH
Confidence 211110 0122233333322 223344555555443322 12222222122233322 22333333344566
Q ss_pred hHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCc-hHHHHHHHHHH
Q 001487 433 RVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPY-LDGIVSKLLVL 511 (1069)
Q Consensus 433 ~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~-l~~i~~~l~~~ 511 (1069)
..+.+|+.|+-.++.....--....-..+...+++.+.+ |...|+..+..++.+++-.+++-. ..+ -...++.+.+.
T Consensus 392 ~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~d-p~~~i~~~~lgai~NlVmefs~~k-skfl~~ngId~l~s~ 469 (678)
T KOG1293|consen 392 DFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMD-PEIMIMGITLGAICNLVMEFSNLK-SKFLRNNGIDILESM 469 (678)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhC-cchhHHHHHHHHHHHHHhhcccHH-HHHHHcCcHHHHHHH
Confidence 788888888877766543211112234566777777788 899999999999999987665311 112 23467888899
Q ss_pred hhcCChhHHHHHHHHHHHHHHhhHhhhH--hhHhhhhHHHHHHHhhccCccccchhhHHHHHHHHH
Q 001487 512 LQNGKQMVQEGALTALASVADSSQEHFQ--KYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLV 575 (1069)
Q Consensus 512 l~~~~~~v~~~al~~l~~l~~~~~~~~~--~~~~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~l 575 (1069)
+.++++.+|..+++++-.+.....+.+. ++-..-...+....++ ..+.+.++++..+..+
T Consensus 470 ~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd----~d~~Vqeq~fqllRNl 531 (678)
T KOG1293|consen 470 LTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLIND----PDWAVQEQCFQLLRNL 531 (678)
T ss_pred hcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhC----CCHHHHHHHHHHHHHh
Confidence 9999999999999999999877765433 3433334444444322 3455666665555443
No 176
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.38 E-value=0.19 Score=58.81 Aligned_cols=183 Identities=17% Similarity=0.193 Sum_probs=120.0
Q ss_pred hHHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCch--------HHHHHHHHHHccCCCHHHHHHHHHHHHhhcccCCCCc
Q 001487 21 SAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPD--------SLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFL 92 (1069)
Q Consensus 21 ~~~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~~p~--------~~~~~L~~il~~~~~~~~R~~a~i~L~~~i~~~~~~~ 92 (1069)
|+||--+|+-++|. -.|-+|...|..|..--|= +..+|.+.+|+++ -.+.|..-+-+=.+++.-.
T Consensus 471 PeQLPiVLQVLLSQ--vHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~-a~ELrpiLVFIWAKILAvD---- 543 (1387)
T KOG1517|consen 471 PEQLPIVLQVLLSQ--VHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSS-ARELRPILVFIWAKILAVD---- 543 (1387)
T ss_pred hHhcchHHHHHHHH--HHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccc-hHhhhhhHHHHHHHHHhcC----
Confidence 68888888888865 7788888888887653221 1237777877753 3566655544444433321
Q ss_pred ccCCCHHHHHHHHHH----HHHHHhh-c-chhhHHHHHHHHHHHHHhcccCCCC----chhhHHHHHHhhcCC-ChhHHH
Q 001487 93 WPRLSLHTQSSLKSM----LLQSIQL-E-SAKSISKKLCDTVSELASNILPENG----WPELLPFMFQCVSSD-SVKLQE 161 (1069)
Q Consensus 93 w~~l~~~~~~~i~~~----ll~~l~~-e-~~~~vr~~~~~~i~~i~~~~~~~~~----w~~ll~~l~~~~~~~-~~~~r~ 161 (1069)
+.-+.+.+|+. +++.|.. . -+++-|..+|-+++.|++. ++.++ -.+++....+.+.++ .+-.|+
T Consensus 544 ----~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~n-f~lGQ~acl~~~li~iCle~lnd~~~pLLrQ 618 (1387)
T KOG1517|consen 544 ----PSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRN-FKLGQKACLNGNLIGICLEHLNDDPEPLLRQ 618 (1387)
T ss_pred ----chhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcc-cchhHHHhccccHHHHHHHHhcCCccHHHHH
Confidence 11233444442 2222222 1 2346788999999999986 55443 257888888888884 688999
Q ss_pred HHHHHHHHhhhhhhhh-cchhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhh
Q 001487 162 SAFLIFAQLSQYIGDT-LTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCL 216 (1069)
Q Consensus 162 ~al~~l~~l~~~~~~~-~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~ 216 (1069)
..+.+|+.+-+.+... ..-.-..-...+...|.|+ .++||.+|+-+|+.++...
T Consensus 619 W~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~-vpEVRaAAVFALgtfl~~~ 673 (1387)
T KOG1517|consen 619 WLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDP-VPEVRAAAVFALGTFLSNG 673 (1387)
T ss_pred HHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCc-cHHHHHHHHHHHHHHhccc
Confidence 9999999998876542 1111122334566678887 9999999999999999864
No 177
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.37 E-value=0.049 Score=60.96 Aligned_cols=157 Identities=21% Similarity=0.222 Sum_probs=110.0
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHh-hCCCCChhHHHHHHHHHHHhHhhhchhHHhh
Q 001487 378 ASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLN-SFRDPHPRVRWAAINAIGQLSTDLGPDLQNQ 456 (1069)
Q Consensus 378 l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~i~~~l~~-~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 456 (1069)
.-+++.+.+.+.++-.|.++...++.---+... ...+..++. ..+|.|..||++|..+||-++-.-
T Consensus 520 Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgn------nkair~lLh~aVsD~nDDVrRaAVialGFVl~~d------- 586 (929)
T KOG2062|consen 520 ADPLIKELLRDKDPILRYGGMYTLALAYVGTGN------NKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRD------- 586 (929)
T ss_pred hHHHHHHHhcCCchhhhhhhHHHHHHHHhccCc------hhhHHHhhcccccccchHHHHHHHHHheeeEecC-------
Confidence 335667778888899998887776643222211 122223333 478999999999999999876321
Q ss_pred hhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhHh
Q 001487 457 FHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQE 536 (1069)
Q Consensus 457 ~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~i~~~l~~~l~~~~~~v~~~al~~l~~l~~~~~~ 536 (1069)
+..+|..++.|.+.-|+.||..+..+|+-.|...+. ...+..|-.+..++...||..|+.+++.+.-...+
T Consensus 587 --p~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~-------~eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~ 657 (929)
T KOG2062|consen 587 --PEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGL-------KEAINLLEPLTSDPVDFVRQGALIALAMIMIQQTE 657 (929)
T ss_pred --hhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCc-------HHHHHHHhhhhcChHHHHHHHHHHHHHHHHHhccc
Confidence 345556666666646899999999999988876552 23345555566688889999999999998777776
Q ss_pred hhHhhHhhhhHHHHHHHhhc
Q 001487 537 HFQKYYDAVMPFLKAILVNA 556 (1069)
Q Consensus 537 ~~~~~~~~i~~~l~~~l~~~ 556 (1069)
..-|-+..+...+.+.+.+.
T Consensus 658 ~~~pkv~~frk~l~kvI~dK 677 (929)
T KOG2062|consen 658 QLCPKVNGFRKQLEKVINDK 677 (929)
T ss_pred ccCchHHHHHHHHHHHhhhh
Confidence 67777777777777777653
No 178
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.35 E-value=1.3 Score=50.13 Aligned_cols=110 Identities=14% Similarity=0.163 Sum_probs=78.0
Q ss_pred CCHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHh--cccCCCCchhhHHHHHHhhcCCChhHHHHHHHHHHHhhhh
Q 001487 96 LSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELAS--NILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQY 173 (1069)
Q Consensus 96 l~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~i~~--~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~ 173 (1069)
...+..+++...++.+..+ ++..||...+.+|+.+.. ...+.+-+..+...+..-+.+..+.+|..|+.+|..+-..
T Consensus 78 ~e~DlV~~~f~hlLRg~Es-kdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d 156 (892)
T KOG2025|consen 78 KEEDLVAGTFYHLLRGTES-KDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGD 156 (892)
T ss_pred chhhHHHHHHHHHHhcccC-cchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcC
Confidence 3455667777777777776 799999999999998877 3344445667777777778889999999999999987643
Q ss_pred hhhhcchhHHHHHHHHHHhhcCCCChHHHHHHHHHHH
Q 001487 174 IGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVI 210 (1069)
Q Consensus 174 ~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~ 210 (1069)
-.+.--+ +...+...++++++++||.+|+.++.
T Consensus 157 ~~dee~~----v~n~l~~liqnDpS~EVRRaaLsnI~ 189 (892)
T KOG2025|consen 157 PKDEECP----VVNLLKDLIQNDPSDEVRRAALSNIS 189 (892)
T ss_pred CCCCccc----HHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence 2222112 22333344444459999999987774
No 179
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=96.34 E-value=2.8 Score=48.09 Aligned_cols=83 Identities=16% Similarity=0.203 Sum_probs=63.0
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhhhc---CchH--HHHHHHHHHccCC-CHHHHHHHHHHHHhhcccCCCCcccCCC
Q 001487 24 FETLISHLMSTSNEQRSEAELLFNLCKQQ---DPDS--LTLKLAHLLQRSP-HPEARAMAAVLLRKLLTRDDSFLWPRLS 97 (1069)
Q Consensus 24 l~~ll~~~~s~d~~~r~~A~~~L~~~~~~---~p~~--~~~~L~~il~~~~-~~~~R~~a~i~L~~~i~~~~~~~w~~l~ 97 (1069)
|..+|..+.||+..+|+..-+.|+++.+. +|.- =+..|++...+.. ++-+|.++.++++.-+.+ ++
T Consensus 25 L~plLlkl~S~~~~VR~kV~eil~hin~Rik~~~~I~LPv~~Ll~q~~~~~~s~~vrnfsliyi~~g~~R--------l~ 96 (501)
T PF13001_consen 25 LPPLLLKLASPHASVRKKVIEILSHINKRIKSNPSIQLPVEALLKQYKEPSDSSFVRNFSLIYIEMGFDR--------LD 96 (501)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHHhccCCcCcCcHHHHHHHHhCCCCchHHHHHHHHHHHHhhhc--------CC
Confidence 33456667889999999999999887553 2321 1356666666644 789999999999887654 78
Q ss_pred HHHHHHHHHHHHHHHhh
Q 001487 98 LHTQSSLKSMLLQSIQL 114 (1069)
Q Consensus 98 ~~~~~~i~~~ll~~l~~ 114 (1069)
.+.+..+...+++.+..
T Consensus 97 ~~e~~~llP~ll~~is~ 113 (501)
T PF13001_consen 97 DEERRELLPSLLKGISK 113 (501)
T ss_pred HHHHHHHHHHHHHhhcc
Confidence 99999999999999984
No 180
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=96.27 E-value=0.042 Score=59.35 Aligned_cols=153 Identities=18% Similarity=0.183 Sum_probs=110.4
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhh-CCCCChhHHHHHHHHHHHhHhhhchhHHhhhhh
Q 001487 381 QLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNS-FRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHP 459 (1069)
Q Consensus 381 ~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~i~~~l~~~-l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ 459 (1069)
++.+++.+.++-.|+++...++.---+.+. ..++..++.. .+|.+..||++|..+||-+|-.- .
T Consensus 520 ~I~ell~d~ds~lRy~G~fs~alAy~GTgn------~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D---------~ 584 (926)
T COG5116 520 YINELLYDKDSILRYNGVFSLALAYVGTGN------LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDD---------R 584 (926)
T ss_pred HHHHHhcCchHHhhhccHHHHHHHHhcCCc------chhHhhhheeecccCchHHHHHHHHheeeeEecC---------c
Confidence 456667778888888877776643322211 1234444444 78999999999999999876321 2
Q ss_pred hhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhHhhhH
Q 001487 460 QVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQ 539 (1069)
Q Consensus 460 ~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~i~~~l~~~l~~~~~~v~~~al~~l~~l~~~~~~~~~ 539 (1069)
..++..++.|.+..++.||....-+|+-.|...+.. ..+..|-.++.+++..||..|+.+++.+.....+.+.
T Consensus 585 ~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~-------~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Ln 657 (926)
T COG5116 585 DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDK-------VATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELN 657 (926)
T ss_pred chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccH-------HHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccC
Confidence 345555566655468899999999998888766532 2344455566788899999999999999988888888
Q ss_pred hhHhhhhHHHHHHHhh
Q 001487 540 KYYDAVMPFLKAILVN 555 (1069)
Q Consensus 540 ~~~~~i~~~l~~~l~~ 555 (1069)
|-+..|...+.+.+.+
T Consensus 658 p~v~~I~k~f~~vI~~ 673 (926)
T COG5116 658 PNVKRIIKKFNRVIVD 673 (926)
T ss_pred hhHHHHHHHHHHHHhh
Confidence 9888898888888765
No 181
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=96.24 E-value=3.6 Score=48.27 Aligned_cols=144 Identities=10% Similarity=0.245 Sum_probs=98.7
Q ss_pred hHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCC-CCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhc
Q 001487 391 WQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFR-DPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAM 469 (1069)
Q Consensus 391 ~~~r~aal~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l 469 (1069)
..+|-.+...++.++-...+ .....+|.+.+.|. .....+|.....+++.+|..... ..+..+|.+...|
T Consensus 945 ~~vra~~vvTlakmcLah~~----LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTa-----m~d~YiP~I~~~L 1015 (1529)
T KOG0413|consen 945 DKVRAVGVVTLAKMCLAHDR----LAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTA-----MTDRYIPMIAASL 1015 (1529)
T ss_pred hHHHHHHHHHHHHHHhhhhH----HHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHH-----HHHHhhHHHHHHh
Confidence 45666677777776654432 33446777777765 45567888877788888765432 3567788888999
Q ss_pred cCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhHhhhHhhHhhhhHHH
Q 001487 470 DDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFL 549 (1069)
Q Consensus 470 ~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~i~~~l~~~l~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~i~~~l 549 (1069)
.| +++-||..++..|.+++.. + +..+-..++=.++..+-+.++++|..+=-+++.+...-.+.| ++..++..+
T Consensus 1016 ~D-p~~iVRrqt~ilL~rLLq~---~-~vKw~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~~~P~~--f~~~FVe~i 1088 (1529)
T KOG0413|consen 1016 CD-PSVIVRRQTIILLARLLQF---G-IVKWNGELFIRFMLALLDANEDIRNDAKFYISEVLQSEEPNF--FPLNFVEYI 1088 (1529)
T ss_pred cC-chHHHHHHHHHHHHHHHhh---h-hhhcchhhHHHHHHHHcccCHHHHHHHHHHHHHHHhhcCccc--hHHHHHHHH
Confidence 99 9999999999998888753 2 234444555555555556789999999999999987765554 334444444
Q ss_pred H
Q 001487 550 K 550 (1069)
Q Consensus 550 ~ 550 (1069)
.
T Consensus 1089 ~ 1089 (1529)
T KOG0413|consen 1089 I 1089 (1529)
T ss_pred H
Confidence 4
No 182
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=96.03 E-value=0.13 Score=57.85 Aligned_cols=254 Identities=13% Similarity=0.122 Sum_probs=156.5
Q ss_pred CCChHHHHHHHHHHHHHHccccHHHHHhHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHH
Q 001487 242 NGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINR 321 (1069)
Q Consensus 242 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~ 321 (1069)
-.+.+.+..-+..|...++..++.+.. ..+++.++..+.-.+.... .+..+..+.+. -...+|...
T Consensus 265 lks~~eK~~Ff~~L~~~l~~~pe~i~~--~kvlp~Ll~~~~~g~a~~~----~ltpl~k~~k~--------ld~~eyq~~ 330 (690)
T KOG1243|consen 265 LKSVEEKQKFFSGLIDRLDNFPEEIIA--SKVLPILLAALEFGDAASD----FLTPLFKLGKD--------LDEEEYQVR 330 (690)
T ss_pred cCcHHHHHHHHHHHHHHHhhhhHHHHH--HHHHHHHHHHhhccccchh----hhhHHHHhhhh--------ccccccccc
Confidence 346666777777776655555544332 2344444443322111111 12222222221 012236677
Q ss_pred HHHHHHHhhcCCCCCcccccCCCCCccccCCcchhhHHHHHHHHHHHcCCccchHHHHHHHHHhhcCCChHHHHHHHHHH
Q 001487 322 LFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIAL 401 (1069)
Q Consensus 322 l~~~l~~~l~~~~~~~~~~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l 401 (1069)
++|.+++++...+. ..+-...+-++.+..++.++.+...++|.+...+.+.+.-.|+-.+.++
T Consensus 331 i~p~l~kLF~~~Dr-----------------~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm 393 (690)
T KOG1243|consen 331 IIPVLLKLFKSPDR-----------------QIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSM 393 (690)
T ss_pred hhhhHHHHhcCcch-----------------HHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHH
Confidence 88888877654421 1222233334444555554556677889999999999999999999999
Q ss_pred HHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHH
Q 001487 402 AQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHA 481 (1069)
Q Consensus 402 ~~l~~~~~~~~~~~~~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a 481 (1069)
..++...... ..-.+++..+-..-.|.++.+|...-.|+|.++.++.+... -..+.....+.++| +-..-|.++
T Consensus 394 ~~La~kL~~~--~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~R---~~vL~~aftralkd-pf~paR~a~ 467 (690)
T KOG1243|consen 394 AVLAPKLSKR--NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASVR---KRVLASAFTRALKD-PFVPARKAG 467 (690)
T ss_pred HHHHhhhchh--hhcHHHHHHHHhhCccccCcccccceeeecccccccchhhh---ccccchhhhhhhcC-CCCCchhhh
Confidence 9988765542 12235666666666699999999999999999988765442 12233334456888 777788888
Q ss_pred HHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhH
Q 001487 482 ASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQ 535 (1069)
Q Consensus 482 ~~al~~l~~~~~~~~~~~~l~~i~~~l~~~l~~~~~~v~~~al~~l~~l~~~~~ 535 (1069)
..++....+.+... ..-..|++.+....-+++..+|..+..++........
T Consensus 468 v~~l~at~~~~~~~---~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl~ 518 (690)
T KOG1243|consen 468 VLALAATQEYFDQS---EVANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKLE 518 (690)
T ss_pred hHHHhhcccccchh---hhhhhccccccccccCcccchhhHHHHHHHHHHhhhh
Confidence 88887766665432 3455667777777778888899888777766554443
No 183
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=95.91 E-value=4.5 Score=46.51 Aligned_cols=175 Identities=13% Similarity=0.165 Sum_probs=111.4
Q ss_pred hhHHHHHHHHHHHcCCccchHHHHHHHH--H-----hhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCC
Q 001487 356 SVGQECLDRLAIALGGNTIVPVASEQLP--A-----YLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFR 428 (1069)
Q Consensus 356 ~~a~~~l~~l~~~~~~~~~~~~l~~~l~--~-----~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~ 428 (1069)
..|...|.++...+....++..++.... . ...-.++..|.-.+..|..-.. -....+.++..+..++.
T Consensus 255 ~~ae~~LKr~~~~~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~-----Aa~~~~~~~~i~~~~l~ 329 (501)
T PF13001_consen 255 DRAEDLLKRLSVSLEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVI-----AATSFPNILQIVFDGLY 329 (501)
T ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHH-----HHhCCccHHHHHhcccc
Confidence 3455566655544433333333333333 1 0012346666655555443211 12356778888888998
Q ss_pred CC--ChhHHHHHHHHH---HHhHhhhchhHHhhhhhhhHHHHHhhcc-------CCCChhHHHHHHHHHHHhhhcCCccc
Q 001487 429 DP--HPRVRWAAINAI---GQLSTDLGPDLQNQFHPQVLPALAGAMD-------DFQNPRVQAHAASAVLNFSENCTPEI 496 (1069)
Q Consensus 429 d~--~~~vr~~a~~~l---~~l~~~~~~~~~~~~~~~il~~l~~~l~-------~~~~~~v~~~a~~al~~l~~~~~~~~ 496 (1069)
++ +.++|..+...+ ......+++......-+.++..+...++ ...+...|..+..+|+.++...+.-
T Consensus 330 ~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l- 408 (501)
T PF13001_consen 330 SDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAPSL- 408 (501)
T ss_pred CCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHHHHHccCccc-
Confidence 88 789999999998 7777777765544444444444444452 1135678999999999999887642
Q ss_pred ccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhHhh
Q 001487 497 LTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEH 537 (1069)
Q Consensus 497 ~~~~l~~i~~~l~~~l~~~~~~v~~~al~~l~~l~~~~~~~ 537 (1069)
+..- -.++..|+..+.+..+++|..+-+|++.++.+....
T Consensus 409 ~~~d-~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~ 448 (501)
T PF13001_consen 409 FSKD-LSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDL 448 (501)
T ss_pred cccc-HHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhcc
Confidence 2222 356778888888889999999999999999887653
No 184
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=95.88 E-value=0.38 Score=52.91 Aligned_cols=151 Identities=17% Similarity=0.086 Sum_probs=103.2
Q ss_pred HHHHHHHHccCCCHHHHHHHHHHHHhhcccCCCCcccCCCHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccC
Q 001487 58 TLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILP 137 (1069)
Q Consensus 58 ~~~L~~il~~~~~~~~R~~a~i~L~~~i~~~~~~~w~~l~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~ 137 (1069)
+..|...+..+.+++++..++..+.. |.. +. ....+++.|.+ .+..+|..++..++.+
T Consensus 56 ~~~L~~aL~~d~~~ev~~~aa~al~~---------~~~--~~----~~~~L~~~L~d-~~~~vr~aaa~ALg~i------ 113 (410)
T TIGR02270 56 TELLVSALAEADEPGRVACAALALLA---------QED--AL----DLRSVLAVLQA-GPEGLCAGIQAALGWL------ 113 (410)
T ss_pred HHHHHHHHhhCCChhHHHHHHHHHhc---------cCC--hH----HHHHHHHHhcC-CCHHHHHHHHHHHhcC------
Confidence 57777777666778888877766643 211 11 24567778876 5777999988888743
Q ss_pred CCCchhhHHHHHHhhcCCChhHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhC
Q 001487 138 ENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLT 217 (1069)
Q Consensus 138 ~~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~ 217 (1069)
..+...+.|...+.++++.+|..++.+++..-.. -.+.+...++++ ++.||..|+.+++.+-..
T Consensus 114 --~~~~a~~~L~~~L~~~~p~vR~aal~al~~r~~~-----------~~~~L~~~L~d~-d~~Vra~A~raLG~l~~~-- 177 (410)
T TIGR02270 114 --GGRQAEPWLEPLLAASEPPGRAIGLAALGAHRHD-----------PGPALEAALTHE-DALVRAAALRALGELPRR-- 177 (410)
T ss_pred --CchHHHHHHHHHhcCCChHHHHHHHHHHHhhccC-----------hHHHHHHHhcCC-CHHHHHHHHHHHHhhccc--
Confidence 4577788888888999999988888766652111 123455567787 899999999999865432
Q ss_pred CcchHhHHHhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHH
Q 001487 218 SSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELA 259 (1069)
Q Consensus 218 ~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~l~~l~ 259 (1069)
..+|. |...+.+.++.+|..++..+..+.
T Consensus 178 ---------~a~~~----L~~al~d~~~~VR~aA~~al~~lG 206 (410)
T TIGR02270 178 ---------LSEST----LRLYLRDSDPEVRFAALEAGLLAG 206 (410)
T ss_pred ---------cchHH----HHHHHcCCCHHHHHHHHHHHHHcC
Confidence 11222 334466789999999988886653
No 185
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.87 E-value=0.18 Score=53.05 Aligned_cols=132 Identities=15% Similarity=0.220 Sum_probs=109.7
Q ss_pred HHHHhhCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCc
Q 001487 421 SMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPY 500 (1069)
Q Consensus 421 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~ 500 (1069)
.-++..+++.+..+|..|...+..+....+... ..+...+++.+.....| .+..||.....++..++....++.+.|+
T Consensus 61 keLl~qlkHhNakvRkdal~glkd~l~s~p~~l-~~~~~~ll~~~~~~i~D-~~~~vR~~~~qll~~~i~~~~~e~~sp~ 138 (393)
T KOG2149|consen 61 KELLSQLKHHNAKVRKDALNGLKDLLKSHPAEL-QSHLYALLQKLRELILD-DDSLVRDALYQLLDSLILPACKEDQSPM 138 (393)
T ss_pred HHHHhhhcCchHhhhHHHHHHHHHHHHhChHHH-HHHHHHHHHHhhhhhcC-ccccHHHHHHHHHHHHHhhcchhhhcch
Confidence 345557889999999999999998887744444 55777888888888888 7899999999999998877666668899
Q ss_pred hHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhHhhhHhhHhhhhHHHHHHHh
Q 001487 501 LDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILV 554 (1069)
Q Consensus 501 l~~i~~~l~~~l~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~ 554 (1069)
..-+++.+...+....+.+|..++..+..++..+++.+..+...+++.....+.
T Consensus 139 ~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~~~~~~il~n~~d~i~ 192 (393)
T KOG2149|consen 139 VSLLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFSRYASKILENFKDVIS 192 (393)
T ss_pred HHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988877777666666555543
No 186
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.79 E-value=0.1 Score=52.50 Aligned_cols=127 Identities=20% Similarity=0.225 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHcCCccchH---HHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhH
Q 001487 358 GQECLDRLAIALGGNTIVP---VASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRV 434 (1069)
Q Consensus 358 a~~~l~~l~~~~~~~~~~~---~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~d~~~~v 434 (1069)
+...+..++...+ +.+.+ .++-.+.+.+++....+-.+|+.+++.+.....+.+...++.++..|+..-...+..|
T Consensus 108 gLn~irrLs~fh~-e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld~lv~~Ll~ka~~dnrFv 186 (334)
T KOG2933|consen 108 GLNSIRRLSEFHP-ESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELDDLVTQLLHKASQDNRFV 186 (334)
T ss_pred hHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHH
Confidence 5556666665554 33333 3444455667788888889999999999998888787788888888877778889999
Q ss_pred HHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCC
Q 001487 435 RWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCT 493 (1069)
Q Consensus 435 r~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~ 493 (1069)
|..|-.+|..+..+..|. .+++.|...+++ .++++|..++..+......++
T Consensus 187 reda~kAL~aMV~~vtp~-------~~L~~L~~~~~~-~n~r~r~~a~~~~~~~v~rl~ 237 (334)
T KOG2933|consen 187 REDAEKALVAMVNHVTPQ-------KLLRKLIPILQH-SNPRVRAKAALCFSRCVIRLG 237 (334)
T ss_pred HHHHHHHHHHHHhccChH-------HHHHHHHHHHhh-hchhhhhhhhccccccceecc
Confidence 999999999988877653 466666667777 889998888877666555543
No 187
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=95.78 E-value=0.93 Score=48.20 Aligned_cols=110 Identities=18% Similarity=0.218 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCCChhHHHHHHHHHHHhhhhhhhhcc--
Q 001487 102 SSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLT-- 179 (1069)
Q Consensus 102 ~~i~~~ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~-- 179 (1069)
..+...++.++.+ ++..+|..+..++|..+-.+. ..-.+.++.+.+.++.++..++..|+.++..+....|....
T Consensus 26 ~ll~~lI~P~v~~-~~~~vR~~al~cLGl~~Lld~--~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~ 102 (298)
T PF12719_consen 26 SLLDSLILPAVQS-SDPAVRELALKCLGLCCLLDK--ELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDS 102 (298)
T ss_pred HHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHhCh--HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccc
Confidence 4455556677777 588999999999998876432 34567888888888777889999999999988877654322
Q ss_pred -------hhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHh
Q 001487 180 -------PHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQC 215 (1069)
Q Consensus 180 -------~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~ 215 (1069)
.....+...+...+.+. ++++|..|++.+..+.-.
T Consensus 103 ~~~~~~~~~~~~l~~~l~~~l~~~-~~~~~~~a~EGl~KLlL~ 144 (298)
T PF12719_consen 103 ESDNDESVDSKSLLKILTKFLDSE-NPELQAIAVEGLCKLLLS 144 (298)
T ss_pred hhccCccchHhHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHhc
Confidence 13456888999999997 899999999999998865
No 188
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=95.75 E-value=0.097 Score=45.14 Aligned_cols=99 Identities=23% Similarity=0.306 Sum_probs=73.6
Q ss_pred HHHHhHHHHHHHHHhhCCC----CChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHH
Q 001487 411 VMVKNLEQVLSMVLNSFRD----PHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVL 486 (1069)
Q Consensus 411 ~~~~~~~~i~~~l~~~l~d----~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~ 486 (1069)
.+.+++=.++..+-..+.| ....-|..+..+++.+.+..++.+ ..+.++++..|...+.. +.++..++.+..
T Consensus 4 fL~~~~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i-~~~~pQI~a~L~sal~~---~~l~~~al~~W~ 79 (107)
T PF08064_consen 4 FLQPHILGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHI-SSARPQIMACLQSALEI---PELREEALSCWN 79 (107)
T ss_pred HHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHhCC---hhhHHHHHHHHH
Confidence 3444555555555555555 445668889999999998555555 56677777777777765 489999999999
Q ss_pred HhhhcCCcccccCchHHHHHHHHHHhh
Q 001487 487 NFSENCTPEILTPYLDGIVSKLLVLLQ 513 (1069)
Q Consensus 487 ~l~~~~~~~~~~~~l~~i~~~l~~~l~ 513 (1069)
.|+..++.+.+.|.++.++-.+++.++
T Consensus 80 ~fi~~L~~~~l~~ll~~~~~~l~~~~~ 106 (107)
T PF08064_consen 80 CFIKTLDEEDLGPLLDQIFAILLPLWD 106 (107)
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHhcc
Confidence 999999988888999988888777654
No 189
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=95.63 E-value=1.2 Score=49.42 Aligned_cols=237 Identities=13% Similarity=0.151 Sum_probs=141.3
Q ss_pred ChHHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchH---HHHHHHHHHc----cCCCHHHHHHHHHHHHhhcccCCCCc
Q 001487 20 DSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDS---LTLKLAHLLQ----RSPHPEARAMAAVLLRKLLTRDDSFL 92 (1069)
Q Consensus 20 ~~~~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~~p~~---~~~~L~~il~----~~~~~~~R~~a~i~L~~~i~~~~~~~ 92 (1069)
|..-+.+++..+.|+|+..|......|..+....++. ....+..++. .+....-=.-...+++.+++..
T Consensus 131 ~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf---- 206 (409)
T PF01603_consen 131 DQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGF---- 206 (409)
T ss_dssp -HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT-----
T ss_pred CHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhcc----
Confidence 4467788899999999999999999998866533322 1122223332 2222222222344555555542
Q ss_pred ccCCCHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCCChhHHHHHHHHHHHhhh
Q 001487 93 WPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQ 172 (1069)
Q Consensus 93 w~~l~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~ 172 (1069)
=..+.++.+..+.+.++.+.....-......+..++..++..+- ..-..++..++..---.++.-....+.-+..+++
T Consensus 207 ~~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp--~l~~~~i~~llk~WP~t~s~Kev~FL~el~~il~ 284 (409)
T PF01603_consen 207 AVPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDP--SLAEPVIKGLLKHWPKTNSQKEVLFLNELEEILE 284 (409)
T ss_dssp -SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-G--GGHHHHHHHHHHHS-SS-HHHHHHHHHHHHHHHT
T ss_pred CCCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCc--hhHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHH
Confidence 12567888888888888888875555667888888888887532 1223344444443333444444556677777877
Q ss_pred hhhh-hcchhHHHHHHHHHHhhcCCCChHHHHHHHHHHHH--HHHhhCCcchHhHHHhhHHHHHHHHHHHHhCC-ChHHH
Q 001487 173 YIGD-TLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVIN--FIQCLTSSADRDRFQDLLPLMMRTLTESLNNG-NEATA 248 (1069)
Q Consensus 173 ~~~~-~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~--l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~~~~ 248 (1069)
..++ .+......++..+..++.++ +..|-..|+..... ++..+. +.....+|.+...+....+.. +..++
T Consensus 285 ~~~~~~f~~i~~~lf~~la~ci~S~-h~qVAErAl~~w~n~~~~~li~-----~~~~~i~p~i~~~L~~~~~~HWn~~Vr 358 (409)
T PF01603_consen 285 VLPPEEFQKIMVPLFKRLAKCISSP-HFQVAERALYFWNNEYFLSLIS-----QNSRVILPIIFPALYRNSKNHWNQTVR 358 (409)
T ss_dssp T--HHHHHHHHHHHHHHHHHHHTSS-SHHHHHHHHGGGGSHHHHHHHH-----CTHHHHHHHHHHHHSSTTSS-SSTTHH
T ss_pred hcCHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHCCHHHHHHHH-----hChHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 6553 45667788888889999998 88888888765542 122221 112334555555554433222 55788
Q ss_pred HHHHHHHHHHHccccHHHHH
Q 001487 249 QEALELLIELAGTEPRFLRR 268 (1069)
Q Consensus 249 ~~~~~~l~~l~~~~~~~~~~ 268 (1069)
..+..++..+.+..+..+..
T Consensus 359 ~~a~~vl~~l~~~d~~lf~~ 378 (409)
T PF01603_consen 359 NLAQNVLKILMEMDPKLFDK 378 (409)
T ss_dssp HHHHHHHHHHHTTSHHHHHH
T ss_pred HHHHHHHHHHHHhCHHHHHH
Confidence 88888888888877776665
No 190
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=95.62 E-value=0.1 Score=44.63 Aligned_cols=98 Identities=23% Similarity=0.367 Sum_probs=74.4
Q ss_pred HHHHhHHHHHHHHHhhCCCCC---h-hHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHH
Q 001487 411 VMVKNLEQVLSMVLNSFRDPH---P-RVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVL 486 (1069)
Q Consensus 411 ~~~~~~~~i~~~l~~~l~d~~---~-~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~ 486 (1069)
.+.+++=.++..+-..+.|.+ | .-|..+..+++.+.+..++.+ ..+.++++..|..++.. ++.|..++.+..
T Consensus 4 fL~~~~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i-~~a~pQI~acL~saL~~---~eL~~~al~~W~ 79 (107)
T smart00802 4 FLKDHFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHI-SSALPQIMACLQSALEI---PELRSLALRCWH 79 (107)
T ss_pred HHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCc---hhHHHHHHHHHH
Confidence 445566566666767777765 2 338889999999999777666 57778888888878865 579999999999
Q ss_pred HhhhcCCcccccCchHHHHHHHHHHh
Q 001487 487 NFSENCTPEILTPYLDGIVSKLLVLL 512 (1069)
Q Consensus 487 ~l~~~~~~~~~~~~l~~i~~~l~~~l 512 (1069)
.++..++.+.+.|.++.++..+++..
T Consensus 80 ~~i~~L~~~~l~~ll~~~~~~i~~~~ 105 (107)
T smart00802 80 VLIKTLKEEELGPLLDQIFAAILPLW 105 (107)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHhc
Confidence 99999988777777777777666554
No 191
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=95.53 E-value=0.13 Score=48.31 Aligned_cols=145 Identities=15% Similarity=0.245 Sum_probs=86.9
Q ss_pred hHHHHHHHHHhhCCC-CChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCC----CChhHHHHHHHHHHHhh
Q 001487 415 NLEQVLSMVLNSFRD-PHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDF----QNPRVQAHAASAVLNFS 489 (1069)
Q Consensus 415 ~~~~i~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~----~~~~v~~~a~~al~~l~ 489 (1069)
..+++++.+++.++. .++.+|..+.+++|.+... .| |....+ .....+. .+..... . ..+.
T Consensus 7 ~yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGAL-DP-----~~~k~~---~~~~~~~~~~~~~~~~~~----~-~l~~ 72 (160)
T PF11865_consen 7 DYPELLDILLNILKTEQSQSIRREALRVLGILGAL-DP-----YKHKSI---QKSLDSKSSENSNDESTD----I-SLPM 72 (160)
T ss_pred HhHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcccc-Cc-----HHHhcc---cccCCccccccccccchh----h-HHhh
Confidence 356788888888864 4699999999999998743 22 211111 1111110 1111111 1 1111
Q ss_pred hcCCcccccCchHHHHHHHHHHhhcCC-hhHHHHHHHHHHHHHHhhHhhhHhhHhhhhHHHHHHHhhccCccccchhhHH
Q 001487 490 ENCTPEILTPYLDGIVSKLLVLLQNGK-QMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKS 568 (1069)
Q Consensus 490 ~~~~~~~~~~~l~~i~~~l~~~l~~~~-~~v~~~al~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~a 568 (1069)
....+..-.-|....+..|...+++++ ..-...++.++..+....+....||+++++|.+...+.+..+ .+|+..
T Consensus 73 ~~~~~~~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~----~~~e~~ 148 (160)
T PF11865_consen 73 MGISPSSEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPD----SLREFY 148 (160)
T ss_pred ccCCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCH----HHHHHH
Confidence 222111111244556788888888876 344557888888888888888899999999999999986432 345544
Q ss_pred HHHHHHHHH
Q 001487 569 MECISLVGM 577 (1069)
Q Consensus 569 ~~~l~~l~~ 577 (1069)
+.-++.+..
T Consensus 149 ~~qL~~lv~ 157 (160)
T PF11865_consen 149 FQQLADLVS 157 (160)
T ss_pred HHHHHHHHH
Confidence 545554443
No 192
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.47 E-value=0.32 Score=50.54 Aligned_cols=146 Identities=14% Similarity=0.085 Sum_probs=93.9
Q ss_pred CCChhHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhCCcchHhHHHhhHHHHH
Q 001487 154 SDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMM 233 (1069)
Q Consensus 154 ~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l 233 (1069)
+.+...++.|+.-|..+++.+.....-.-...+..++..+++. +..+|..|+..++++++.-+. ....+.+. ..+
T Consensus 94 s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~-~~~lR~~Aa~Vigt~~qNNP~--~Qe~v~E~--~~L 168 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENS-DAELRELAARVIGTAVQNNPK--SQEQVIEL--GAL 168 (342)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCC-cHHHHHHHHHHHHHHHhcCHH--HHHHHHHc--ccH
Confidence 4567889999999999999876542222223334444488987 999999999999999987431 11222211 244
Q ss_pred HHHHHHHhC-CChHHHHHHHHHHHHHHccccHHHHHhHH-HHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHh
Q 001487 234 RTLTESLNN-GNEATAQEALELLIELAGTEPRFLRRQLV-DVVGSMLQIAEAESLEEGTRHLAIEFVITLAEA 304 (1069)
Q Consensus 234 ~~l~~~l~~-~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~ 304 (1069)
+.|...+.. .+..+|..++-++..++++.+.-....+. .=+..+..++..++.+...+..++.++..+...
T Consensus 169 ~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~ 241 (342)
T KOG2160|consen 169 SKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQE 241 (342)
T ss_pred HHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHh
Confidence 455555543 34566789999999999887654444322 113344455555545666777788777777763
No 193
>PF05536 Neurochondrin: Neurochondrin
Probab=95.47 E-value=6.7 Score=45.37 Aligned_cols=186 Identities=12% Similarity=0.079 Sum_probs=124.7
Q ss_pred hHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCCh-hHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhc
Q 001487 391 WQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHP-RVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAM 469 (1069)
Q Consensus 391 ~~~r~aal~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~d~~~-~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l 469 (1069)
...+.-|+..|+.++....-.-.+.+-.-+|.+++.+..... .+..-|..||..++.. +.....-.-...++.++..+
T Consensus 71 ~~~~~LavsvL~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~-~~G~~aLl~~g~v~~L~ei~ 149 (543)
T PF05536_consen 71 EEYLSLAVSVLAAFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASS-PEGAKALLESGAVPALCEII 149 (543)
T ss_pred HHHHHHHHHHHHHHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcC-cHhHHHHHhcCCHHHHHHHH
Confidence 445666777777777622212234556778888888877666 8888899999998843 22221122346777888877
Q ss_pred cCCCChhHHHHHHHHHHHhhhcCCccccc---CchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhHhh------hHh
Q 001487 470 DDFQNPRVQAHAASAVLNFSENCTPEILT---PYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEH------FQK 540 (1069)
Q Consensus 470 ~~~~~~~v~~~a~~al~~l~~~~~~~~~~---~~l~~i~~~l~~~l~~~~~~v~~~al~~l~~l~~~~~~~------~~~ 540 (1069)
.+ .+.....+...+..++...+.+... ..+..+++.+...+.......+-.++..++.+....+.. -..
T Consensus 150 ~~--~~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~ 227 (543)
T PF05536_consen 150 PN--QSFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPK 227 (543)
T ss_pred Hh--CcchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhh
Confidence 76 5666788888888887766533222 334566677777776666677778899999888776311 123
Q ss_pred hHhhhhHHHHHHHhhccCccccchhhHHHHHHHHHHHhhChh
Q 001487 541 YYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKD 582 (1069)
Q Consensus 541 ~~~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~ 582 (1069)
....+...+..++++... ..-|..++...+.+....|.+
T Consensus 228 W~~~l~~gl~~iL~sr~~---~~~R~~al~Laa~Ll~~~G~~ 266 (543)
T PF05536_consen 228 WLSDLRKGLRDILQSRLT---PSQRDPALNLAASLLDLLGPE 266 (543)
T ss_pred hHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHHHHHhChH
Confidence 667788888888876433 335777888888888888743
No 194
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=95.39 E-value=0.067 Score=49.73 Aligned_cols=102 Identities=15% Similarity=0.143 Sum_probs=80.9
Q ss_pred chHHHHHHHHHHHHhhcCCC------------CCChhhhhhHHHHHHHHHHHHhhcCCCCCHhhHHHHHHhhCCCCCcHH
Q 001487 958 VKPLVGEALSRLNVVIRHPN------------ALQPENLMAYDNAVSALGKICQFHRDSIDAAQVVPAWLNCLPIKGDLI 1025 (1069)
Q Consensus 958 ~~~~~~~~l~~L~~~l~~~~------------~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~l~~lp~~~d~~ 1025 (1069)
+.|+++.++|.++.-..... +..|+..++|..|.+|+..++..+.+.+++..++..+..+|- .+.+
T Consensus 3 i~~~L~~llP~ly~et~v~~elir~V~mGPFKh~vDDGLelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~--D~~D 80 (169)
T PF08623_consen 3 IRPHLDQLLPNLYAETKVKPELIREVDMGPFKHKVDDGLELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLK--DEHD 80 (169)
T ss_dssp TTTTHHHHHHHHHHTTS--STTEEEEEETTCEEEEEGGGHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTS--S-HH
T ss_pred hHHHHHHHHHHHHHHhccCHHHheeeecCCceeeecCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcC--CcHH
Confidence 56788899999998765432 224889999999999999999999998999999999999984 2445
Q ss_pred HHHHHHHHHHHHHhhcCCcccCcCcCChhHHHHHHHHHhh
Q 001487 1026 EAKIVHEQLCSMVERSDSDLLGPNHQYLPKIVSVFAEVSS 1065 (1069)
Q Consensus 1026 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 1065 (1069)
-..-++..+.+++...|..+... ++.++..+..+|+
T Consensus 81 Ik~L~~~~l~kl~~~~p~~v~~~----Ld~l~~~l~~~L~ 116 (169)
T PF08623_consen 81 IKMLCHLMLSKLAQLAPEEVLQR----LDSLVEPLRKTLS 116 (169)
T ss_dssp HHHHHHHHHHHHHHS-HHHHHHC----CTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCHHHHHHH----HHHHHHHHHHHhh
Confidence 56679999999998888888776 8888888888875
No 195
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=95.38 E-value=4.7 Score=43.06 Aligned_cols=180 Identities=12% Similarity=0.143 Sum_probs=109.6
Q ss_pred hhhHHHHHHHHHHHHHhcccCC----------CCchhhHHHHHHhhcCCChhHHHHHHHHHHHhhhhh--hhhcchhHHH
Q 001487 117 AKSISKKLCDTVSELASNILPE----------NGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYI--GDTLTPHLKH 184 (1069)
Q Consensus 117 ~~~vr~~~~~~i~~i~~~~~~~----------~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~--~~~~~~~~~~ 184 (1069)
+.+.|+.++.+.+.+.+..... ..||+++..+.....+++...- +-.+|+.++++- ...+- .+.
T Consensus 89 ~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~--~g~mlRec~k~e~l~~~iL--~~~ 164 (335)
T PF08569_consen 89 DFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALN--CGDMLRECIKHESLAKIIL--YSE 164 (335)
T ss_dssp -HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHH--HHHHHHHHTTSHHHHHHHH--TSG
T ss_pred CCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccch--HHHHHHHHHhhHHHHHHHh--CcH
Confidence 4455666666666666543321 3568889999988887765433 233344444331 11110 011
Q ss_pred HHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhCCcchHhHHHhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHccc--
Q 001487 185 LHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTE-- 262 (1069)
Q Consensus 185 l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~~~-- 262 (1069)
.+-.+.+..+.+ +-+|-..|..++..+...-. ....+.+......+......++.+++--.+..++.+|++++...
T Consensus 165 ~f~~ff~~~~~~-~Fdiasdaf~t~~~llt~hk-~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellldr~n 242 (335)
T PF08569_consen 165 CFWKFFKYVQLP-NFDIASDAFSTFKELLTRHK-KLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLLDRSN 242 (335)
T ss_dssp GGGGHHHHTTSS-SHHHHHHHHHHHHHHHHSSH-HHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHSGGG
T ss_pred HHHHHHHHhcCC-ccHhHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHHchhH
Confidence 222344566776 88999999998888776421 11234455667777787778888888899999999999988543
Q ss_pred cHHHHHhHH--HHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHh
Q 001487 263 PRFLRRQLV--DVVGSMLQIAEAESLEEGTRHLAIEFVITLAEA 304 (1069)
Q Consensus 263 ~~~~~~~~~--~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~ 304 (1069)
...+..|+. +-+..++..+. +.+..++..|+..+.-++.+
T Consensus 243 ~~vm~~yi~~~~nLkl~M~lL~--d~sk~Iq~eAFhvFKvFVAN 284 (335)
T PF08569_consen 243 FNVMTRYISSPENLKLMMNLLR--DKSKNIQFEAFHVFKVFVAN 284 (335)
T ss_dssp HHHHHHHTT-HHHHHHHHHHTT---S-HHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHCCHHHHHHHHHHhc--CcchhhhHHHHHHHHHHHhC
Confidence 455666654 34555566664 34688999999999888774
No 196
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.37 E-value=11 Score=47.30 Aligned_cols=177 Identities=8% Similarity=0.087 Sum_probs=104.9
Q ss_pred hhhHHHHHHHHHHHcCCccchHHHHHHHHHh-hcCCChHHHHHHHHHHHHHHhhcHH-HHHHhHHHHHHHHHhhCCCCCh
Q 001487 355 YSVGQECLDRLAIALGGNTIVPVASEQLPAY-LAAPEWQKHHAALIALAQIAEGCAK-VMVKNLEQVLSMVLNSFRDPHP 432 (1069)
Q Consensus 355 ~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~-l~~~~~~~r~aal~~l~~l~~~~~~-~~~~~~~~i~~~l~~~l~d~~~ 432 (1069)
.+.+..+.+.++.........+.++..+... ..+..|++|.+.+..+....-...- ......++|...+...+.|...
T Consensus 1504 ~~~a~~~~~lm~~~~~~~~l~~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~D~~i 1583 (1710)
T KOG1851|consen 1504 KNSALLCHSLMSLSWIGHHLQPEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLNDDQI 1583 (1710)
T ss_pred HHHHHHHHHHHHhhccchhhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHcchHH
Confidence 3455666666665554456777777777743 3466899999998888776543221 2345667888899999999999
Q ss_pred hHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCC-ChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHH
Q 001487 433 RVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQ-NPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVL 511 (1069)
Q Consensus 433 ~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~-~~~v~~~a~~al~~l~~~~~~~~~~~~l~~i~~~l~~~ 511 (1069)
.||..|+.+|+-+...-.-.. .+..-........... +......|..+|+.++-.++- .+..+++..+..+...
T Consensus 1584 ~vre~Aa~~Lsgl~~~s~~~~----~~~k~d~~~~~~~s~s~~~i~~HgavlgLgA~VlafPy-~vP~wip~~L~~Ls~f 1658 (1710)
T KOG1851|consen 1584 EVREEAAKCLSGLLQGSKFQF----VSDKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAFPY-VVPLWIPKPLMNLSSF 1658 (1710)
T ss_pred HHHHHHHHHHHHHHhcccccc----chHhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhccc-cchhhhHHHHHHHHhh
Confidence 999999999988765432222 2222222222222211 222335667777777766653 2333455444444443
Q ss_pred hhcCChhHHHHHHHHHHHHHHhhHhh
Q 001487 512 LQNGKQMVQEGALTALASVADSSQEH 537 (1069)
Q Consensus 512 l~~~~~~v~~~al~~l~~l~~~~~~~ 537 (1069)
..++ ..++..+-.+++..-+...+.
T Consensus 1659 a~e~-~~i~~tvkktvseFrrth~D~ 1683 (1710)
T KOG1851|consen 1659 ARES-AAIKQTVKKTVSEFRRTHADT 1683 (1710)
T ss_pred cCCc-hHHHHHHHHHHHHHHHHhhhh
Confidence 3333 556666666666655544433
No 197
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=95.36 E-value=3.2 Score=46.18 Aligned_cols=115 Identities=14% Similarity=0.200 Sum_probs=72.2
Q ss_pred HHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhCCcchHhHHHhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHcc
Q 001487 182 LKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGT 261 (1069)
Q Consensus 182 ~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~~ 261 (1069)
...++..+++..-.. +..-....+.-+..++..+ ....+......+.+.+..++++.+..+...|+..|..- .
T Consensus 253 ~~~~i~~llk~WP~t-~s~Kev~FL~el~~il~~~----~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~--~ 325 (409)
T PF01603_consen 253 AEPVIKGLLKHWPKT-NSQKEVLFLNELEEILEVL----PPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNNE--Y 325 (409)
T ss_dssp HHHHHHHHHHHS-SS--HHHHHHHHHHHHHHHTT------HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSH--H
T ss_pred HHHHHHHHHHhCCCC-CchhHHHHHHHHHHHHHhc----CHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCH--H
Confidence 444555555554443 4444445566666666655 34567888888999999999999999999988776421 0
Q ss_pred ccHHHHHhHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHHHHH
Q 001487 262 EPRFLRRQLVDVVGSMLQIA---EAESLEEGTRHLAIEFVITLAE 303 (1069)
Q Consensus 262 ~~~~~~~~~~~l~~~l~~~~---~~~~~~~~~r~~a~~~l~~l~~ 303 (1069)
....+..+-..+++.+...+ ...+.+..+|..+...+..+.+
T Consensus 326 ~~~li~~~~~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~ 370 (409)
T PF01603_consen 326 FLSLISQNSRVILPIIFPALYRNSKNHWNQTVRNLAQNVLKILME 370 (409)
T ss_dssp HHHHHHCTHHHHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHT
T ss_pred HHHHHHhChHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 11233344445555555543 2346788899999888887776
No 198
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=95.12 E-value=2.8 Score=46.92 Aligned_cols=244 Identities=14% Similarity=0.124 Sum_probs=124.6
Q ss_pred hHHHHHHHHHHHHHHhhcHHHHHHhHHHHHH-HHHhhCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhc
Q 001487 391 WQKHHAALIALAQIAEGCAKVMVKNLEQVLS-MVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAM 469 (1069)
Q Consensus 391 ~~~r~aal~~l~~l~~~~~~~~~~~~~~i~~-~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l 469 (1069)
.+.|.+|..+||.++...+. ..+..++. .+...|++++..-|..|+..+..++............+.+.+.|...|
T Consensus 101 ~r~Ri~aA~ALG~l~~~~~~---~~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~L 177 (441)
T PF12054_consen 101 IRARIAAAKALGLLLSYWPE---SSLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEIL 177 (441)
T ss_pred HHHHHHHHHHHHHHHHhccc---chHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHHH
Confidence 67899999999999887643 33444554 688899999998899999999999887654321111356666777777
Q ss_pred cCCCC-----------hhHHHHHHHHHHHhhhcCC--cccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhHh
Q 001487 470 DDFQN-----------PRVQAHAASAVLNFSENCT--PEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQE 536 (1069)
Q Consensus 470 ~~~~~-----------~~v~~~a~~al~~l~~~~~--~~~~~~~l~~i~~~l~~~l~~~~~~v~~~al~~l~~l~~~~~~ 536 (1069)
.+ +. .++|..+...+..+.+... .+. .|.++.+++.--. ..++...-+.|-...+........
T Consensus 178 ~~-~~~~~Y~El~~~l~~lr~ec~~Ll~~f~~~g~~~~~k-lp~l~~~v~~~~~--~~p~~fsi~~A~~v~~~~~~~l~~ 253 (441)
T PF12054_consen 178 EN-PEPPYYDELVPSLKRLRTECQQLLATFRDVGKVPPSK-LPSLPVVVQGEPE--AGPEAFSIEQAEKVVGEDFEKLKK 253 (441)
T ss_pred cC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhh-ccccccccccccc--cCCccCCHHHHHHHHHHHHHHHHH
Confidence 74 21 1345555555555554322 111 1333322221000 011111222333333333222222
Q ss_pred hhHh--------hHhhhhHHHHHHHhhc-cCccccchhhHHHHHHHHHHHhhChhhhhhhHHHHHHHHHHHhcCCCCCCC
Q 001487 537 HFQK--------YYDAVMPFLKAILVNA-TDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDD 607 (1069)
Q Consensus 537 ~~~~--------~~~~i~~~l~~~l~~~-~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~ 607 (1069)
.+.+ -++.--..+...+... ........|..+.-+-+.++...=++++.|.+..+|+.+.. +.+.
T Consensus 254 ~l~~~~k~~a~~~Le~~r~~l~~ai~~~~~~~~~~~~~V~Aa~A~A~v~l~~lP~KLnPiIrpLMdSIK~------Een~ 327 (441)
T PF12054_consen 254 SLSPSQKLSALQALEDRRQRLQAAIEEAKEVQTSRDVRVLAAAASALVALGGLPKKLNPIIRPLMDSIKR------EENE 327 (441)
T ss_pred hcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHhhc------cccH
Confidence 1111 1111111111111110 00112223333333333333332247888888888887654 2334
Q ss_pred chhhHHHHHHHHHHHHhcCCcccchhhhhHHHHHhcccCC
Q 001487 608 PTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKP 647 (1069)
Q Consensus 608 ~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~ 647 (1069)
.+...+..++..+...+-..-..--++|+.-|...+..|+
T Consensus 328 ~LQ~rsA~slA~Li~~~~~rkp~PndKIvkNLc~flC~D~ 367 (441)
T PF12054_consen 328 LLQQRSAESLARLIQLCVDRKPCPNDKIVKNLCTFLCVDT 367 (441)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHhhhhccCc
Confidence 5666666777777766553333334678888877776553
No 199
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=95.07 E-value=1.1 Score=44.85 Aligned_cols=150 Identities=13% Similarity=0.184 Sum_probs=88.4
Q ss_pred HHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCC-----CChhHHHHHHHHHHH
Q 001487 413 VKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDF-----QNPRVQAHAASAVLN 487 (1069)
Q Consensus 413 ~~~~~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~-----~~~~v~~~a~~al~~ 487 (1069)
.-|++.+++.+ +...+...|.+|+.+|.. ..-+.+++|.++..+.+. .+..+-........+
T Consensus 196 q~YF~kvisal---~dEs~~~~r~aAl~sLr~----------dsGlhQLvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~s 262 (450)
T COG5095 196 QMYFDKVISAL---LDESDEQTRDAALESLRN----------DSGLHQLVPYFIHFFNEQITKNLKNLEKLTTVVMMYSS 262 (450)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHhcc----------CccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 34556666555 455678899999988743 223445555555544431 112222333334444
Q ss_pred hhhcCCcccccCchHHHHHHHHHHhhc------C----ChhHHHHHHHHHHHHHHhhHhhhHhhHhhhhHHHHHHHhhcc
Q 001487 488 FSENCTPEILTPYLDGIVSKLLVLLQN------G----KQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNAT 557 (1069)
Q Consensus 488 l~~~~~~~~~~~~l~~i~~~l~~~l~~------~----~~~v~~~al~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~ 557 (1069)
+.++-. -.+.||+.+++|.++.|+-. + ...+|.-|...++.++..++......-+.+...+.+.+-+..
T Consensus 263 LL~N~~-iFvdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtrTllKafLD~~ 341 (450)
T COG5095 263 LLKNKY-IFVDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTRTLLKAFLDRE 341 (450)
T ss_pred HhcCCc-eeecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHHHHHHHHHhcc
Confidence 555433 35679999999999987632 1 134888888889988888877655555666666655554422
Q ss_pred CccccchhhHHHHHHHHHHHh
Q 001487 558 DKSNRMLRAKSMECISLVGMA 578 (1069)
Q Consensus 558 ~~~~~~lr~~a~~~l~~l~~~ 578 (1069)
.. ..-.-.|+.+++.+...
T Consensus 342 k~--~sT~YGalkgls~l~ke 360 (450)
T COG5095 342 KT--ESTQYGALKGLSILSKE 360 (450)
T ss_pred cc--cchhhhhhhhhhhhchh
Confidence 11 11223366777766653
No 200
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=94.86 E-value=0.84 Score=47.89 Aligned_cols=146 Identities=14% Similarity=0.198 Sum_probs=100.8
Q ss_pred hhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCccc---ccC--chHHHHHHHHHHhh--------cCCh
Q 001487 451 PDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEI---LTP--YLDGIVSKLLVLLQ--------NGKQ 517 (1069)
Q Consensus 451 ~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~---~~~--~l~~i~~~l~~~l~--------~~~~ 517 (1069)
+.+ ..+++-++|.++..++| .++.+|..++..+..+++...... +.. ..+.+-+.+..++. +.+.
T Consensus 111 ~~i-~~~~~liiP~iL~llDD-~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~ 188 (282)
T PF10521_consen 111 PWI-SQHWPLIIPPILNLLDD-YSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESL 188 (282)
T ss_pred chH-HHhhhHHHhhHHHHhcC-CCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhH
Confidence 444 68899999999999999 899999999999999999877554 332 35555566666665 4556
Q ss_pred hHHHHHHHHHHHHHHhhHh-hhHhhHhhhhHH----HHHHHhhccCccccchhhHHHHHHHHHHHhhChhhhhhhHHHHH
Q 001487 518 MVQEGALTALASVADSSQE-HFQKYYDAVMPF----LKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVM 592 (1069)
Q Consensus 518 ~v~~~al~~l~~l~~~~~~-~~~~~~~~i~~~----l~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i~ 592 (1069)
.+-..++.|+-.++..... +-.++...+... +++.+....+-....++...++.+..+...+| .....|++.++
T Consensus 189 ~Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lG-i~~~~hL~rii 267 (282)
T PF10521_consen 189 ELLQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELG-ISSVKHLQRII 267 (282)
T ss_pred HHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhc-cHHHHHHHHHH
Confidence 7888899999998876421 112233333333 33333322221235567777888888888898 56788899988
Q ss_pred HHHHHHh
Q 001487 593 EVLMSLQ 599 (1069)
Q Consensus 593 ~~l~~l~ 599 (1069)
..+.+..
T Consensus 268 ~~l~~~l 274 (282)
T PF10521_consen 268 PVLSQIL 274 (282)
T ss_pred HHHHHHh
Confidence 8887743
No 201
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=94.85 E-value=3.4 Score=44.19 Aligned_cols=136 Identities=14% Similarity=0.188 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHhhhchhhhHH----HHHhhhhhhhcCC--CCHHHHHHHHHHHHHHHhHhhhhhhh----hhHhHHHHHH
Q 001487 860 VGEILGTLIKTFKAAFLPFFD----ELSSYLTPMWGKD--KTAEERRIAICIFDDVAEQCREAALK----YYETYLPFLL 929 (1069)
Q Consensus 860 ~~~~l~~l~~~~~~~~~~~~~----~l~~~l~~~l~~~--~~~~~r~~a~~~l~~l~~~~~~~~~~----~~~~l~~~ll 929 (1069)
+..+++++++..++.+.+.+. .++...+.+++++ .-|+.|..-+..+..+.+.|...+.. .+..++..++
T Consensus 92 vL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~ 171 (319)
T PF08767_consen 92 VLSLMATIINKLGELIQPQVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIV 171 (319)
T ss_dssp HHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHH
Confidence 345666666666665544444 4455555666543 34788888899999999998776543 4667777788
Q ss_pred hhccCCChhHHHhhhHHHHHHHhhcCC-------C-chHHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHHHHHhh
Q 001487 930 EACNDENQDVRQAAVYGLGVCAEFGGS-------V-VKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQF 1000 (1069)
Q Consensus 930 ~~l~~~~~~vr~~a~~~lg~l~~~~~~-------~-~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~ 1000 (1069)
-++++.+.+|...+..++..++..... . ++.|+..+++.+..++.++.+ ...-+.-+..+.+++..
T Consensus 172 wg~kh~~~~I~~~~L~~l~~ll~~~~~~~~~~~~~F~~~y~~~il~~if~vltD~~H-----k~gf~~q~~iL~~Lf~~ 245 (319)
T PF08767_consen 172 WGFKHTNREISETGLNILLELLNNVSKTNPEFANQFYQQYYLDILQDIFSVLTDSDH-----KSGFKLQSQILSNLFRL 245 (319)
T ss_dssp HHHTSSSHHHHHHHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHHHHHHSTT------GGGHHHHHHHHHHHHHH
T ss_pred HHhCCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCccc-----HHHHHHHHHHHHHHHHH
Confidence 888999999999999999998876543 1 345677788888888887753 34555566777777654
No 202
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.78 E-value=3.1 Score=52.23 Aligned_cols=108 Identities=14% Similarity=0.140 Sum_probs=80.3
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHHHhhCCcchHhHHHhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHccccHHH
Q 001487 187 AVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFL 266 (1069)
Q Consensus 187 ~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~ 266 (1069)
..+++-+... ++.++..|++.+..++... +.+....++|........++.+.+..+|......+..+.....+.+
T Consensus 44 ~~I~kkL~Kk-D~~TK~KaL~eL~eli~~~----~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~l 118 (1312)
T KOG0803|consen 44 DIIVKKLLKR-DETTKIKALQELSELIDTS----DTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKL 118 (1312)
T ss_pred HHHHHHHhcc-ChHHHHHHHHhHHHhcccc----cchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444554 7899999999999988765 3344455778888888888889999999999999999999899999
Q ss_pred HHhHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHH
Q 001487 267 RRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITL 301 (1069)
Q Consensus 267 ~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l 301 (1069)
.||+..+++..+... .+.+-.+...|...+...
T Consensus 119 sp~LK~li~~wl~~~--~d~~~~vs~aa~~sf~~~ 151 (1312)
T KOG0803|consen 119 SPFLKSLIPPWLGGQ--FDLDYPVSEAAKASFKDG 151 (1312)
T ss_pred hHHHHhhhhhhhhee--cccchHHHHHHHHHHHhh
Confidence 999999999766533 344555555555544433
No 203
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=94.75 E-value=9.8 Score=43.40 Aligned_cols=243 Identities=14% Similarity=0.078 Sum_probs=128.0
Q ss_pred HHHHHHHHHHHHhhhcCchHHHHHHHHHHc----cCCCHHHHHHHHHHHHhhcccCCCCcccCCCHHHHHHHHHHHHHHH
Q 001487 37 EQRSEAELLFNLCKQQDPDSLTLKLAHLLQ----RSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSI 112 (1069)
Q Consensus 37 ~~r~~A~~~L~~~~~~~p~~~~~~L~~il~----~~~~~~~R~~a~i~L~~~i~~~~~~~w~~l~~~~~~~i~~~ll~~l 112 (1069)
..|-+|-+.|.+..+..|-.-++.+++... .+.+.++|+.+..+|..++... .. .-...|..+++.+
T Consensus 5 ~~R~~a~~~l~~~i~~~~~~~i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~----~~-----~~~~~R~~fF~~I 75 (464)
T PF11864_consen 5 SERIKAAEELCESIQKYPLSSIEEIWYAAKDLIDPNQPSEARRAALELLIACIKRQ----DS-----SSGLMRAEFFRDI 75 (464)
T ss_pred HHHHHHHHHHHHHHHhCCchHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHcc----cc-----ccHHHHHHHHHHH
Confidence 345555555554322234222344444433 3667889999999999999875 11 1235667777777
Q ss_pred hhcchhhHHHHHHHHHHHHHhc--ccCCCCchhhHHHHHHhhcCC---------------------------ChhHHHHH
Q 001487 113 QLESAKSISKKLCDTVSELASN--ILPENGWPELLPFMFQCVSSD---------------------------SVKLQESA 163 (1069)
Q Consensus 113 ~~e~~~~vr~~~~~~i~~i~~~--~~~~~~w~~ll~~l~~~~~~~---------------------------~~~~r~~a 163 (1069)
.....+..-..-.+++..+... +.. ..-.++.|.+..++... +...-...
T Consensus 76 ~~~~~~~d~~~~l~aL~~LT~~Grdi~-~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~l 154 (464)
T PF11864_consen 76 SDPSNDDDFDLRLEALIALTDNGRDID-FFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDL 154 (464)
T ss_pred hcCCCchhHHHHHHHHHHHHcCCcCch-hcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHH
Confidence 7543333333334455555442 111 23356667776666311 11111222
Q ss_pred HHHHHHhhhhhhhhcc-hhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhCCcchHhHHHhhHHHHHHHHHHHHhC
Q 001487 164 FLIFAQLSQYIGDTLT-PHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNN 242 (1069)
Q Consensus 164 l~~l~~l~~~~~~~~~-~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~ 242 (1069)
+..+..+++.-...+. ..+..++..+............-..++..+..++.+-.-+ .+-++.++.+|+...+.
T Consensus 155 l~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP------~~sl~~~i~vLCsi~~~ 228 (464)
T PF11864_consen 155 LQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIP------SESLSPCIEVLCSIVNS 228 (464)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCC------hHHHHHHHHHHhhHhcc
Confidence 3334444443222222 3566666666555444324444578888888888763111 23456778888876543
Q ss_pred CChHHHHHHHHHHHHHHccccHHHHHhHHHHHHHHHHHhc--CC--CcchHHHHHHHHHHHHHHH
Q 001487 243 GNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAE--AE--SLEEGTRHLAIEFVITLAE 303 (1069)
Q Consensus 243 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~~~--~~--~~~~~~r~~a~~~l~~l~~ 303 (1069)
. +....+.+++..+++.+.. ...+..+..++. .. ..+..+-+.|+.++..+.-
T Consensus 229 ~--~l~~~~w~~m~nL~~S~~g------~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~ 285 (464)
T PF11864_consen 229 V--SLCKPSWRTMRNLLKSHLG------HSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLW 285 (464)
T ss_pred c--ccchhHHHHHHHHHcCccH------HHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHh
Confidence 2 5566677777777764422 123333444441 11 1223344567777776655
No 204
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=94.72 E-value=2.5 Score=46.63 Aligned_cols=147 Identities=14% Similarity=0.178 Sum_probs=93.4
Q ss_pred HhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCC-------CChhHHHHHHHHHH
Q 001487 414 KNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDF-------QNPRVQAHAASAVL 486 (1069)
Q Consensus 414 ~~~~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~-------~~~~v~~~a~~al~ 486 (1069)
-|+.+|...+.. .++..|..|+.+|.. +.-+.+++|.++..+.+. .+-..-......+.
T Consensus 207 lYy~~It~a~~g----~~~~~r~eAL~sL~T----------DsGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~r 272 (576)
T KOG2549|consen 207 LYYKEITEACTG----SDEPLRQEALQSLET----------DSGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVR 272 (576)
T ss_pred HHHHHHHHHHhc----CCHHHHHHHHHhhcc----------CccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHH
Confidence 455555555544 788899999988754 223455666665555441 22333344455555
Q ss_pred HhhhcCCcccccCchHHHHHHHHHHhhc----------CChhHHHHHHHHHHHHHHhhHhhhHhhHhhhhHHHHHHHhhc
Q 001487 487 NFSENCTPEILTPYLDGIVSKLLVLLQN----------GKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNA 556 (1069)
Q Consensus 487 ~l~~~~~~~~~~~~l~~i~~~l~~~l~~----------~~~~v~~~al~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~ 556 (1069)
++.++-. -.+.||+-.++|.++.|+-. .++.+|..|...++.++...+.......+.+...+...|.+.
T Consensus 273 SLl~Np~-i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~ 351 (576)
T KOG2549|consen 273 SLLDNPN-IFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDN 351 (576)
T ss_pred HHhcCCc-cchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCC
Confidence 5655533 45789999999999998743 357799999999999999888775555667777777777653
Q ss_pred cCccccchhhHHHHHHHHHHH
Q 001487 557 TDKSNRMLRAKSMECISLVGM 577 (1069)
Q Consensus 557 ~~~~~~~lr~~a~~~l~~l~~ 577 (1069)
..+ ....-.++.++..++.
T Consensus 352 ~~~--~st~YGai~gL~~lg~ 370 (576)
T KOG2549|consen 352 KKP--LSTHYGAIAGLSELGH 370 (576)
T ss_pred CCC--chhhhhHHHHHHHhhh
Confidence 221 1222234555555544
No 205
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=94.65 E-value=27 Score=48.09 Aligned_cols=103 Identities=16% Similarity=0.250 Sum_probs=73.1
Q ss_pred ChHHHHHHHHHHHHHHHhhCCcchHhHHHhhHHHHHHHHHHHH-----hCCChHHHHHHHHHHHHHHccccHHHHHhHHH
Q 001487 198 NPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESL-----NNGNEATAQEALELLIELAGTEPRFLRRQLVD 272 (1069)
Q Consensus 198 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l-----~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 272 (1069)
..+.|...+.-++..++..........+..++|.+++.+...- .++..+.|..+++++..+. ..+.+.||..+
T Consensus 20 ~~~~klk~~~E~~~~le~~~~~~~~~~l~~~ip~~l~~l~~~~~~~~~~~~~~~lR~~~Leil~r~~--~~e~~~~~~~~ 97 (3550)
T KOG0889|consen 20 PIESKLKMLVEIRDFLENLFSPESYLFLEMLIPLLLNFLENTEKSFSAESPEQELRNLVLEILNRLP--HNEVFKPFSQE 97 (3550)
T ss_pred chHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHhcccCchhhhcCcHHHHHHHHHHHHHhcc--cHHHHHHHHHH
Confidence 4567777777777777765444343445677787777765421 2334577888888888775 35789999999
Q ss_pred HHHHHHHHhcCCCcchHHHHHHHHHHHHHHHh
Q 001487 273 VVGSMLQIAEAESLEEGTRHLAIEFVITLAEA 304 (1069)
Q Consensus 273 l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~ 304 (1069)
++..+++++.+ .+++-...|+..+..+.+.
T Consensus 98 ~~~~~~~vl~~--dNeen~~l~lkii~~l~r~ 127 (3550)
T KOG0889|consen 98 LLKVLMRVLTN--DNEENAILCLKIITDLFRQ 127 (3550)
T ss_pred HHHHHHHHHhc--ccchhhhhHHHHHHHHHHh
Confidence 99999999865 3566677788888888773
No 206
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=94.48 E-value=18 Score=45.22 Aligned_cols=76 Identities=16% Similarity=0.132 Sum_probs=55.5
Q ss_pred HhHHHHHHhhccCCChhHHHhhhHHHHHHHhhcCCCchHHH--HHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHHHHHh
Q 001487 922 ETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKPLV--GEALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQ 999 (1069)
Q Consensus 922 ~~l~~~ll~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~--~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~ 999 (1069)
...+..+++.|+...-.|-.|++.+|+.|.-.+++. +.++ ...+.-|.+++... +.++....+.+|-.++.
T Consensus 529 ~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~D-Qq~LwD~gAv~mLrnLIhSK------hkMIa~GSaaALrNLln 601 (2195)
T KOG2122|consen 529 HNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPED-QQMLWDDGAVPMLRNLIHSK------HKMIAMGSAAALRNLLN 601 (2195)
T ss_pred hhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHH-HHHHHhcccHHHHHHHHhhh------hhhhhhhHHHHHHHHhc
Confidence 456788999999999999999999999998888753 2322 22466666776554 45677778888888887
Q ss_pred hcCCC
Q 001487 1000 FHRDS 1004 (1069)
Q Consensus 1000 ~~~~~ 1004 (1069)
+.|..
T Consensus 602 ~RPAk 606 (2195)
T KOG2122|consen 602 FRPAK 606 (2195)
T ss_pred CCchh
Confidence 76543
No 207
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=94.48 E-value=5.6 Score=42.54 Aligned_cols=101 Identities=12% Similarity=0.196 Sum_probs=72.5
Q ss_pred CChHHHHHHHHHHHHHHhhcHHHHH----HhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhHhhhch-------hHHhhh
Q 001487 389 PEWQKHHAALIALAQIAEGCAKVMV----KNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGP-------DLQNQF 457 (1069)
Q Consensus 389 ~~~~~r~aal~~l~~l~~~~~~~~~----~~~~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~-------~~~~~~ 457 (1069)
.-|+.|..-...+.++.+.+...+. ..+..++..+..++++++..|...++.++..+.+.+.. .+...|
T Consensus 132 ~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~~~~~~~~F~~~y 211 (319)
T PF08767_consen 132 EYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSKTNPEFANQFYQQY 211 (319)
T ss_dssp SSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-SHHHHHHHHHHH
T ss_pred hChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 3489999999999999998776443 35678889999999999999999999999998877654 233445
Q ss_pred hhhhHHHHHhhccCCCChhHHHHHHHHHHHhh
Q 001487 458 HPQVLPALAGAMDDFQNPRVQAHAASAVLNFS 489 (1069)
Q Consensus 458 ~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~ 489 (1069)
+-.++..++..+.|..+...-..-+..|..++
T Consensus 212 ~~~il~~if~vltD~~Hk~gf~~q~~iL~~Lf 243 (319)
T PF08767_consen 212 YLDILQDIFSVLTDSDHKSGFKLQSQILSNLF 243 (319)
T ss_dssp HHHHHHHHHHHHHSTT-GGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcccHHHHHHHHHHHHHHH
Confidence 56677777777777333333233344555554
No 208
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.45 E-value=12 Score=42.93 Aligned_cols=109 Identities=18% Similarity=0.173 Sum_probs=79.4
Q ss_pred ccchHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhHhhhch
Q 001487 372 NTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGP 451 (1069)
Q Consensus 372 ~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 451 (1069)
++++..++.++.....+++.++|.-.+..+..+.......=...++.+...+...+.|..|.||..|..+|+++-..-..
T Consensus 80 ~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~d 159 (892)
T KOG2025|consen 80 EDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKD 159 (892)
T ss_pred hhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCC
Confidence 34566667777778888999999999999999887433222345677888888999999999999999999997642221
Q ss_pred hHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHH
Q 001487 452 DLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAV 485 (1069)
Q Consensus 452 ~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al 485 (1069)
---.+...+...++..|++.||.+|...+
T Consensus 160 -----ee~~v~n~l~~liqnDpS~EVRRaaLsnI 188 (892)
T KOG2025|consen 160 -----EECPVVNLLKDLIQNDPSDEVRRAALSNI 188 (892)
T ss_pred -----CcccHHHHHHHHHhcCCcHHHHHHHHHhh
Confidence 11234555555555448999999887665
No 209
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=94.41 E-value=0.33 Score=40.30 Aligned_cols=65 Identities=18% Similarity=0.195 Sum_probs=55.9
Q ss_pred CCCCHHHHHHHHHHHHHHHhHhhhhhhhhhHhHHHHHHhhccCCChhHHHhhhHHHHHHHhhcCCC
Q 001487 892 KDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSV 957 (1069)
Q Consensus 892 ~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~l~~~ll~~l~~~~~~vr~~a~~~lg~l~~~~~~~ 957 (1069)
.++.+..|..++..|..+++... ......+.++..++..++|+|+.|=-+|+.+++.++...++.
T Consensus 13 ~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~ 77 (92)
T PF10363_consen 13 NDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDE 77 (92)
T ss_pred cCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHH
Confidence 45667799999999999998876 122367899999999999999999999999999999998864
No 210
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=94.26 E-value=7.4 Score=41.75 Aligned_cols=202 Identities=19% Similarity=0.205 Sum_probs=105.8
Q ss_pred CchHHHHHHHHHHccC-CCHHHHHHHHHHHHhhcccCCCCcccCC---CHHHHHHHHHHHHHHHhhcchhhHHHHHHHHH
Q 001487 53 DPDSLTLKLAHLLQRS-PHPEARAMAAVLLRKLLTRDDSFLWPRL---SLHTQSSLKSMLLQSIQLESAKSISKKLCDTV 128 (1069)
Q Consensus 53 ~p~~~~~~L~~il~~~-~~~~~R~~a~i~L~~~i~~~~~~~w~~l---~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~i 128 (1069)
+.+.+...++.++... .++++.+....++..++...+ .....+ ........-..+++.+.. ++..++..++.++
T Consensus 52 ~~~~~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~-~~~~~~~~~~~~~~~~~~~~fl~ll~~-~D~~i~~~a~~iL 129 (312)
T PF03224_consen 52 DGDQYASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDP-SRVELFLELAKQDDSDPYSPFLKLLDR-NDSFIQLKAAFIL 129 (312)
T ss_dssp ----------HHHHHH---HHHHHHHHHHHHHHHH-SS-SSHHHHHHHHH-TTH--HHHHHHH-S--SSHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCH-HHHHHHHHhcccccchhHHHHHHHhcC-CCHHHHHHHHHHH
Confidence 4445556667777764 889999999999999888752 111111 110111144567776665 6999999999999
Q ss_pred HHHHhcccCCCCch---hhHHHHHHhhcC----CChhHHHHHHHHHHHhhhhh--hhhcchhHHHHHHHHHHhh------
Q 001487 129 SELASNILPENGWP---ELLPFMFQCVSS----DSVKLQESAFLIFAQLSQYI--GDTLTPHLKHLHAVFLNCL------ 193 (1069)
Q Consensus 129 ~~i~~~~~~~~~w~---~ll~~l~~~~~~----~~~~~r~~al~~l~~l~~~~--~~~~~~~~~~l~~~l~~~l------ 193 (1069)
+.++...-. ..-. +.++.+++++.+ ++.+.+..++.+|..+...- ...+-. ...++.+...+
T Consensus 130 t~Ll~~~~~-~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~--~~~v~~l~~iL~~~~~~ 206 (312)
T PF03224_consen 130 TSLLSQGPK-RSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWK--SNGVSPLFDILRKQATN 206 (312)
T ss_dssp HHHHTSTTT---HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHT--HHHHHHHHHHHH-----
T ss_pred HHHHHcCCc-cccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHh--cCcHHHHHHHHHhhccc
Confidence 999986433 2333 677777777764 34456688899999887542 111211 44455555555
Q ss_pred cCCCChHHHHHHHHHHHHHHHhhCCcchHhHH--HhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHccccHH
Q 001487 194 TNSNNPDVKIAALNAVINFIQCLTSSADRDRF--QDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRF 265 (1069)
Q Consensus 194 ~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~--~~~~~~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~ 265 (1069)
.+..+.++...++-|+= .-.+... ..+.+ ..++|.+++.+.. ...+.+..-++.+|..+++..++.
T Consensus 207 ~~~~~~Ql~Y~~ll~lW--lLSF~~~-~~~~~~~~~~i~~L~~i~~~---~~KEKvvRv~la~l~Nl~~~~~~~ 274 (312)
T PF03224_consen 207 SNSSGIQLQYQALLCLW--LLSFEPE-IAEELNKKYLIPLLADILKD---SIKEKVVRVSLAILRNLLSKAPKS 274 (312)
T ss_dssp ----HHHHHHHHHHHHH--HHTTSHH-HHHHHHTTSHHHHHHHHHHH-----SHHHHHHHHHHHHHTTSSSSTT
T ss_pred CCCCchhHHHHHHHHHH--HHhcCHH-HHHHHhccchHHHHHHHHHh---cccchHHHHHHHHHHHHHhccHHH
Confidence 22224455555554443 2223211 11111 1256666666554 346788888888898888876653
No 211
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.22 E-value=0.82 Score=48.36 Aligned_cols=127 Identities=16% Similarity=0.175 Sum_probs=102.2
Q ss_pred HhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHH
Q 001487 384 AYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLP 463 (1069)
Q Consensus 384 ~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~ 463 (1069)
..+.+-+.++|..|+..+..+....+..+..++..+++.+.....|.+..||.+....+..+.....+.-...++.-+++
T Consensus 65 ~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~~l~~~ 144 (393)
T KOG2149|consen 65 SQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMVSLLMP 144 (393)
T ss_pred hhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchHHHHHH
Confidence 45677889999999999999888877777788889999999999999999999999998887666555545778899999
Q ss_pred HHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHh
Q 001487 464 ALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLL 512 (1069)
Q Consensus 464 ~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~i~~~l~~~l 512 (1069)
.+..++.+ -.+.+|..+...+..+++.+++.. ..+...+++.+...+
T Consensus 145 yi~~AMTh-it~~i~~dslkfL~~Ll~~~~p~~-~~~~~~il~n~~d~i 191 (393)
T KOG2149|consen 145 YISSAMTH-ITPEIQEDSLKFLSLLLERYPDTF-SRYASKILENFKDVI 191 (393)
T ss_pred HHHHHHhh-ccHHHHHhhHHHHHHHHHHcChHH-HHHHHHHHHHHHHHH
Confidence 99999998 889999999999999999887643 333333444444433
No 212
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.15 E-value=0.6 Score=52.35 Aligned_cols=146 Identities=16% Similarity=0.154 Sum_probs=102.2
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHHHhh-----cHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHH----hHhhh
Q 001487 379 SEQLPAYLAAPEWQKHHAALIALAQIAEG-----CAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQ----LSTDL 449 (1069)
Q Consensus 379 ~~~l~~~l~~~~~~~r~aal~~l~~l~~~-----~~~~~~~~~~~i~~~l~~~l~d~~~~vr~~a~~~l~~----l~~~~ 449 (1069)
-|.+-..++.+|..+|-.|...+-.+.-- ..+.+...++.-...+...|+|+-|.||..|..-+.. +.+.+
T Consensus 176 ~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~i 255 (1005)
T KOG1949|consen 176 KPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMI 255 (1005)
T ss_pred hHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHc
Confidence 35566778889999998877766544321 1123334445555677889999999999988655544 44444
Q ss_pred chhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHH
Q 001487 450 GPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALAS 529 (1069)
Q Consensus 450 ~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~i~~~l~~~l~~~~~~v~~~al~~l~~ 529 (1069)
++.+ +..++..+...+.......||.+....|..++.+-. -.+.++.++|++-..+.+.+..||-++...+..
T Consensus 256 P~~i----~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~---sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ 328 (1005)
T KOG1949|consen 256 PPTI----LIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPL---SHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLK 328 (1005)
T ss_pred CHHH----HHHHHHHHHHHhhhccchheehhHhcCcHHHHcCcc---chhHHHHHHHhcchhhhccchhHHHHHHHHHHH
Confidence 4433 455666666555433567899888888888876633 247899999999999999999999998888876
Q ss_pred HH
Q 001487 530 VA 531 (1069)
Q Consensus 530 l~ 531 (1069)
+-
T Consensus 329 ik 330 (1005)
T KOG1949|consen 329 IK 330 (1005)
T ss_pred HH
Confidence 63
No 213
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=94.11 E-value=3.4 Score=45.70 Aligned_cols=174 Identities=12% Similarity=0.173 Sum_probs=105.1
Q ss_pred HHHHHcc--CCCHHHHHHHHHHHHhhcccCCCCcccCCCHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCC
Q 001487 61 LAHLLQR--SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPE 138 (1069)
Q Consensus 61 L~~il~~--~~~~~~R~~a~i~L~~~i~~~~~~~w~~l~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~~ 138 (1069)
+.+++.+ ....+.|...+.+.+-..... ++. .+...+-..|.-...+.+-..+...+..+..+..|.
T Consensus 13 ~~~if~k~Q~s~aGhrk~~a~l~~~~t~~~-------f~~----~flr~vn~IL~~Kk~~si~dRil~fl~~f~~Y~~~~ 81 (885)
T COG5218 13 MQLIFNKIQQSSAGHRKSLAELMEMLTAHE-------FSE----EFLRVVNTILACKKNPSIPDRILSFLKRFFEYDMPD 81 (885)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHh-------hHH----HHHHHHHHhhccccCCCcHHHHHHHHHHHHHhcCCC
Confidence 3444443 336777888887765542211 111 121111122221123444445556666676766664
Q ss_pred CC-----chhhHHHHHHhhcCCChhHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHH
Q 001487 139 NG-----WPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFI 213 (1069)
Q Consensus 139 ~~-----w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~ 213 (1069)
+. ...++.+++....+++..+|-.++.+|..+...+++.-....+.++..+..-+-|. .+.||..|+.+|..+-
T Consensus 82 dpeg~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DR-E~~VR~eAv~~L~~~Q 160 (885)
T COG5218 82 DPEGEELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDR-EKAVRREAVKVLCYYQ 160 (885)
T ss_pred ChhhhHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHH
Confidence 32 24566777778889999999999999999988776644446788888888888886 8999999999998776
Q ss_pred HhhCCcchHhHHHhhHHHHHHHHHHHHh-CCChHHHHHHHHHH
Q 001487 214 QCLTSSADRDRFQDLLPLMMRTLTESLN-NGNEATAQEALELL 255 (1069)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~l~~l~~~l~-~~~~~~~~~~~~~l 255 (1069)
+-- .+ .+. .+.+.+...++ +++.++|..++--+
T Consensus 161 e~~-~n--een------~~~n~l~~~vqnDPS~EVRr~allni 194 (885)
T COG5218 161 EME-LN--EEN------RIVNLLKDIVQNDPSDEVRRLALLNI 194 (885)
T ss_pred hcc-CC--hHH------HHHHHHHHHHhcCcHHHHHHHHHHHe
Confidence 432 11 111 12223333333 55667787765444
No 214
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=94.01 E-value=17 Score=43.13 Aligned_cols=76 Identities=16% Similarity=0.221 Sum_probs=53.7
Q ss_pred HHHHHHHHHhhc-CCCChHHHHHHHHHHHHHHHhhCCcchHhHHHhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHcc
Q 001487 183 KHLHAVFLNCLT-NSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGT 261 (1069)
Q Consensus 183 ~~l~~~l~~~l~-~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~~ 261 (1069)
..++..+...++ ++ ...|++.++..+.+...+.. ....++..+..|.....++-..+|+.++..|.++...
T Consensus 575 ~~V~~mi~Rr~~~d~-k~~v~k~a~~~l~S~l~~cD-------~~~~fe~~L~iLq~lCrd~~vsvrk~~~~Sltel~~~ 646 (1529)
T KOG0413|consen 575 KDVVYMIVRRLSTDD-KAPVKKAACSLLKSYLSYCD-------EASKFEVVLSILQMLCRDRMVSVRKTGADSLTELMLR 646 (1529)
T ss_pred HHHHHHHHHHhccCC-CcccchhhHHHHHHHHhccc-------hhhcchhHHHHHHHHhcCcchHHHHHHHHHHHHHHhh
Confidence 345666776666 44 67899999999988887752 1233444455566666677778999999999998876
Q ss_pred ccHHH
Q 001487 262 EPRFL 266 (1069)
Q Consensus 262 ~~~~~ 266 (1069)
.|..+
T Consensus 647 ~pr~~ 651 (1529)
T KOG0413|consen 647 DPRLF 651 (1529)
T ss_pred Cchhh
Confidence 66555
No 215
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=94.00 E-value=0.2 Score=46.69 Aligned_cols=106 Identities=11% Similarity=0.095 Sum_probs=77.4
Q ss_pred CCHHHHHHHHHHHHHHHhHhhhhhhhhhHhHHHHHHhhccCCChhHHHhhhHHHHHHHhhcCCCchHHHHHHHHHHHHhh
Q 001487 894 KTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVI 973 (1069)
Q Consensus 894 ~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~l~~~ll~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~~l~~L~~~l 973 (1069)
...+.|..|+.++..++..+...+. +..++..+..++.| +.++|--+...+.+++...|..+.+.+..+.+.+...+
T Consensus 39 DGLelRK~ayE~lytlLd~~~~~~~--~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L 115 (169)
T PF08623_consen 39 DGLELRKAAYECLYTLLDTCLSRID--ISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTL 115 (169)
T ss_dssp GGGHHHHHHHHHHHHHHHSTCSSS---HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhCC--HHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHh
Confidence 3457899999999999988776542 56678889999999 99999999999999999999888888888888888888
Q ss_pred cCCCC---CC---hhhhhhHHHHHHHHHHHHhhcC
Q 001487 974 RHPNA---LQ---PENLMAYDNAVSALGKICQFHR 1002 (1069)
Q Consensus 974 ~~~~~---~~---~~~~~~~~~~~~~l~~i~~~~~ 1002 (1069)
...-. .. +...+....++.++..+-...|
T Consensus 116 ~~k~k~~AvkQE~Ek~~E~~rs~lr~~~~l~~~i~ 150 (169)
T PF08623_consen 116 SKKLKENAVKQEIEKQQELIRSVLRAVKALNSKIP 150 (169)
T ss_dssp H----TTS-HHHHHHHHHHHHHHHHHHHHH-HSST
T ss_pred hccCCCCcccccHHHHHHHHHHHHHHHHHHHHhCc
Confidence 64321 11 3346677777777777744444
No 216
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=93.98 E-value=10 Score=40.56 Aligned_cols=72 Identities=15% Similarity=0.203 Sum_probs=52.7
Q ss_pred HHHHHHHhhCCCCC-hhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhh
Q 001487 418 QVLSMVLNSFRDPH-PRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSE 490 (1069)
Q Consensus 418 ~i~~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~ 490 (1069)
+++..++..|...+ |.+-..||.-+|++.++.+.....----..=..+++.+++ ++++||-+|..|+..+..
T Consensus 366 ellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh-~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 366 ELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNH-EDPEVRYHALLAVQKLMV 438 (442)
T ss_pred HHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcC-CCchHHHHHHHHHHHHHh
Confidence 57888888887554 8888999999999998876432100011223456778888 999999999999988764
No 217
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=93.97 E-value=7.1 Score=43.81 Aligned_cols=77 Identities=19% Similarity=0.262 Sum_probs=52.6
Q ss_pred hhHHHHHHHHHHHhHhhhchhHHhhhhhhhHH-HHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHH
Q 001487 432 PRVRWAAINAIGQLSTDLGPDLQNQFHPQVLP-ALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLV 510 (1069)
Q Consensus 432 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~-~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~i~~~l~~ 510 (1069)
.+.|..|+.+||.++..++. .....++. .+...|++ +...-|..++..+..++.........+..+.+.+.|..
T Consensus 101 ~r~Ri~aA~ALG~l~~~~~~----~~~~~~~~~~L~~~L~S-~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~ 175 (441)
T PF12054_consen 101 IRARIAAAKALGLLLSYWPE----SSLQEIFQPLLLPYLNS-PSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLE 175 (441)
T ss_pred HHHHHHHHHHHHHHHHhccc----chHHHHHHHHHHHHhcc-hhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHH
Confidence 35688899999999988754 33445555 57888888 77677788888888888876543222223455566666
Q ss_pred Hhh
Q 001487 511 LLQ 513 (1069)
Q Consensus 511 ~l~ 513 (1069)
+++
T Consensus 176 ~L~ 178 (441)
T PF12054_consen 176 ILE 178 (441)
T ss_pred HHc
Confidence 555
No 218
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=93.75 E-value=19 Score=42.73 Aligned_cols=96 Identities=15% Similarity=0.195 Sum_probs=58.6
Q ss_pred hhHhHHHHHHhhccC-CChhHHHhhhHHHHHHHhhcCCCchHHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHHHHH
Q 001487 920 YYETYLPFLLEACND-ENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKIC 998 (1069)
Q Consensus 920 ~~~~l~~~ll~~l~~-~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~l~~i~ 998 (1069)
..+.++-.+++.+.. ++-.-|.-...++++++...++.+.|...++++.|.++...- +++..++.........+|.++
T Consensus 530 ~lenl~~lvl~~~as~~~~~e~~~ll~~i~rii~~~~~~i~pl~~~il~~L~~lv~~~-~knps~p~~~h~~fe~I~al~ 608 (947)
T COG5657 530 LLENLILLVLSLMASPSSLEEREFLLQLISRIIIIDPELIAPLGSEILQLLDNLVEIN-AKNPSNPQFAHYTFEDIGALV 608 (947)
T ss_pred cHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhCHHhhhhhHHHHHHHHHHHHHHH-ccCCccHHHHHHHHHHHHHHH
Confidence 456666666777665 346677778889999999999999998888888887765321 111122333333344444444
Q ss_pred hhcCCCCCHhhHHHHHHhhC
Q 001487 999 QFHRDSIDAAQVVPAWLNCL 1018 (1069)
Q Consensus 999 ~~~~~~~~~~~~~~~~l~~l 1018 (1069)
..... ..++.+|.|...+
T Consensus 609 ~~~~~--~~~~~ip~l~~~l 626 (947)
T COG5657 609 FLKSG--MCEITIPTLVLAL 626 (947)
T ss_pred Hhhhc--ccccchHHHHHhh
Confidence 43222 2455666666543
No 219
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=93.75 E-value=1.5 Score=49.80 Aligned_cols=192 Identities=16% Similarity=0.195 Sum_probs=129.6
Q ss_pred hHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCcc
Q 001487 269 QLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDED 348 (1069)
Q Consensus 269 ~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~e~ed 348 (1069)
|-..+++++++.... .+..+|..-++-+...++. -. + ..+-.+++|++..-+.+.+
T Consensus 327 yq~~i~p~l~kLF~~--~Dr~iR~~LL~~i~~~i~~---Lt---~--~~~~d~I~phv~~G~~DTn-------------- 382 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKS--PDRQIRLLLLQYIEKYIDH---LT---K--QILNDQIFPHVALGFLDTN-------------- 382 (690)
T ss_pred cccchhhhHHHHhcC--cchHHHHHHHHhHHHHhhh---cC---H--HhhcchhHHHHHhhcccCC--------------
Confidence 444567777776643 4677888777766666652 10 0 1233567888777655432
Q ss_pred ccCCcchhhHHHHHHHHHHHcCCccchHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCC
Q 001487 349 AGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFR 428 (1069)
Q Consensus 349 ~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~ 428 (1069)
...+.....++..++..++.+.+-..++.++...-.|++...|.-...++|.++........ -.-+...+.+.++
T Consensus 383 ---~~Lre~Tlksm~~La~kL~~~~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~R--~~vL~~aftralk 457 (690)
T KOG1243|consen 383 ---ATLREQTLKSMAVLAPKLSKRNLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASVR--KRVLASAFTRALK 457 (690)
T ss_pred ---HHHHHHHHHHHHHHHhhhchhhhcHHHHHHHHhhCccccCcccccceeeecccccccchhhh--ccccchhhhhhhc
Confidence 12333455666667766765545566778777776678888888888888888765432111 1112334555789
Q ss_pred CCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCC
Q 001487 429 DPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCT 493 (1069)
Q Consensus 429 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~ 493 (1069)
|+-+.-|.++.+.+....+.+.. ......|+|.+.....| +++.||..|..++..+.....
T Consensus 458 dpf~paR~a~v~~l~at~~~~~~---~~va~kIlp~l~pl~vd-~e~~vr~~a~~~i~~fl~kl~ 518 (690)
T KOG1243|consen 458 DPFVPARKAGVLALAATQEYFDQ---SEVANKILPSLVPLTVD-PEKTVRDTAEKAIRQFLEKLE 518 (690)
T ss_pred CCCCCchhhhhHHHhhcccccch---hhhhhhccccccccccC-cccchhhHHHHHHHHHHhhhh
Confidence 99999999999998887766543 45677899999888888 899999999999988877654
No 220
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=93.74 E-value=2.1 Score=47.20 Aligned_cols=139 Identities=14% Similarity=0.176 Sum_probs=88.9
Q ss_pred hHHHHHHHHHhhcC--------CChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhC----------CCCChhHHH
Q 001487 375 VPVASEQLPAYLAA--------PEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSF----------RDPHPRVRW 436 (1069)
Q Consensus 375 ~~~l~~~l~~~l~~--------~~~~~r~aal~~l~~l~~~~~~~~~~~~~~i~~~l~~~l----------~d~~~~vr~ 436 (1069)
+..++|++..++.. .|-..-...+....++.++..-.+.+|+..++|.++.++ .|.++.+|.
T Consensus 237 L~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRD 316 (576)
T KOG2549|consen 237 LQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRD 316 (576)
T ss_pred HHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHH
Confidence 44455555554432 234444455556666666666678889999999888765 466889999
Q ss_pred HHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCC-CChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhc
Q 001487 437 AAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDF-QNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQN 514 (1069)
Q Consensus 437 ~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~-~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~i~~~l~~~l~~ 514 (1069)
-|+..+..++..++... ......++..+.+.+.|. ........++..|..|....-...+.|.+......+...+..
T Consensus 317 fAA~ll~~i~k~f~~~y-~~L~~Rit~tl~k~l~D~~~~~st~YGai~gL~~lg~~~I~~~ilp~L~~~~~~l~~~l~~ 394 (576)
T KOG2549|consen 317 FAARLLAQICKNFSTLY-NNLQPRITRTLSKALLDNKKPLSTHYGAIAGLSELGHEVIRTVILPNLKEYNERLQSVLDV 394 (576)
T ss_pred HHHHHHHHHHHhhhhHH-HHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHhhhhhhhheeccchHHHHHHhhhhccc
Confidence 99999999999887655 445677888888888872 223344445555555443222234556666666655555443
No 221
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.72 E-value=18 Score=42.58 Aligned_cols=396 Identities=14% Similarity=0.109 Sum_probs=205.7
Q ss_pred HHHHHHHHHHHHHHhhHhhhHhhHhhhhHHHHHHHhhcc-CccccchhhHHHHHHHHHHHhhChhhhhhhHHHHHHHHHH
Q 001487 519 VQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNAT-DKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMS 597 (1069)
Q Consensus 519 v~~~al~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~-~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~ 597 (1069)
-|...-.++-..-...|+.+ ++.++..|-+.+.... +++.+..-..++-++..++...| +...+.++..++....
T Consensus 440 YR~diSD~~~~~Y~ilgd~l---l~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~-~t~~~~i~rl~~~~as 515 (982)
T KOG2022|consen 440 YRKDISDLLMSSYSILGDGL---LDFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLG-ETESTWIPRLFETSAS 515 (982)
T ss_pred HHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcC-cchhHHHHHHHHhccc
Confidence 33333333333334444332 3333444444444432 34444445556778888888888 6677777877777666
Q ss_pred HhcCCCCCCCchhhHHHHHHHHHHHHhcCCcccchhhhhHHHHHhcccCCCccccCCCCccccccCCCcccchhhcCCce
Q 001487 598 LQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKR 677 (1069)
Q Consensus 598 l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (1069)
+.-+.+ +-.+...+...++.++.-+++. ..|++..+|.+++++...
T Consensus 516 ik~S~~--n~ql~~Tss~~igs~s~~l~e~-P~~ln~sl~~L~~~Lh~s------------------------------- 561 (982)
T KOG2022|consen 516 IKLSAP--NPQLLSTSSDLIGSLSNWLGEH-PMYLNPSLPLLFQGLHNS------------------------------- 561 (982)
T ss_pred cccccC--ChhHHHHHHHHHHHHHHHHhcC-CcccCchHHHHHHHhcCc-------------------------------
Confidence 443322 1224455666777777777765 446777888888888421
Q ss_pred eeeccchHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHhhccCCc-CChHHHHHHHHhHHHHHHHHHHHHHcCCCCCC
Q 001487 678 IGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFY-FHEEVRKAAVSAMPELLRSAKLAIEKGLAPGR 756 (1069)
Q Consensus 678 ~~v~~~~~~~k~~a~~~l~~l~~~~~~~~~p~~~~~~~~l~~~l~~~-~~~~ir~~a~~~l~~l~~~~~~~~~~~~~~~~ 756 (1069)
++-+.|...+..+++.|+.++.||..+++..+-..+... ..+..|....+++|.++...
T Consensus 562 --------k~s~q~i~tl~tlC~~C~~~L~py~d~~~a~~~e~l~~~~~~~S~~~klm~sIGyvls~~------------ 621 (982)
T KOG2022|consen 562 --------KESEQAISTLKTLCETCPESLDPYADQFSAVCYEVLNKSNAKDSDRLKLMKSIGYVLSRL------------ 621 (982)
T ss_pred --------hHHHHHHHHHHHHHHhhhhhCchHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHHhc------------
Confidence 012345666899999999999999999888766655432 25678888999999887764
Q ss_pred CHHHHHHHHHHHHHHHHHHHcc----C-CcHHHH---HHHHHHHHHHHHHhCCC------CCHH---------HHHHHHH
Q 001487 757 NESYVKQLSDFIIPALVEALHK----E-PDTEIC---ASMLDSLNECIQISGPL------LDEG---------QVRSIVD 813 (1069)
Q Consensus 757 ~~~~~~~~~~~i~~~l~~~~~~----~-~~~~v~---~~~l~~l~~~i~~~~~~------~~~~---------~~~~~~~ 813 (1069)
.++...++...++..++..+.. + ++.+-+ .-.+.++.++...+... -.+. -+..++.
T Consensus 622 ~pEe~~kyl~~lin~il~qle~~l~~~i~~~e~~l~~~~~l~~iS~LftSL~~~~~~~d~d~~~~~~~~~qq~~il~v~~ 701 (982)
T KOG2022|consen 622 KPEEIPKYLMKLINPILSQLEINLAPGIDDQENHLRIAFQLNTISALFTSLINKKDIIDTDQPEQREEPFQQFPILQVLQ 701 (982)
T ss_pred cHHhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCccccccchhhhccccccCCHHHHHH
Confidence 2334445555555555544432 1 112111 11234444444443210 0000 1223444
Q ss_pred HHHHHHHHHHhhHHHHHHHhcCCCCChHhhhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhch-hhhHHHHHhhhhhhhcC
Q 001487 814 EIKQVITASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVFDQVGEILGTLIKTFKAAF-LPFFDELSSYLTPMWGK 892 (1069)
Q Consensus 814 ~l~~~l~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~-~~~~~~l~~~l~~~l~~ 892 (1069)
.+++++.+.+.- .+ ...++.+.+|..++.=.+..++.| .|++..+.+++..+...
T Consensus 702 k~i~~~~kv~s~--~~----------------------~~s~vve~~C~i~~~~v~~~~~sF~~p~l~~l~~Fi~r~~~~ 757 (982)
T KOG2022|consen 702 KAIPVFEKVLSM--WL----------------------GLSDVVEASCIIMVKGVRSLLTSFPEPMLPSLCPFIVRFLTS 757 (982)
T ss_pred HHHHHHHHHHHH--Hh----------------------cchhHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhccc
Confidence 555555543320 00 112344555655554455566667 77888888888775421
Q ss_pred CCCHHHHHH-HHHHHHHHHhHhhhhhhhhhHhHHHHHHhhcc----CCChhHHHhhhHHHHHHHhhcCCCchH---HHHH
Q 001487 893 DKTAEERRI-AICIFDDVAEQCREAALKYYETYLPFLLEACN----DENQDVRQAAVYGLGVCAEFGGSVVKP---LVGE 964 (1069)
Q Consensus 893 ~~~~~~r~~-a~~~l~~l~~~~~~~~~~~~~~l~~~ll~~l~----~~~~~vr~~a~~~lg~l~~~~~~~~~~---~~~~ 964 (1069)
..-...--. ++-........+++.+...+...+.-.+.... .+++++-..-..++....+..|..+.+ .+..
T Consensus 758 ~~a~tl~l~~~~l~~~~~~~~~~~lv~~~~~~~~q~sl~lf~~~~f~n~~Di~~~~~~~v~~ilkk~P~~~~~~~~~~ts 837 (982)
T KOG2022|consen 758 CLAVTLSLIAACLLAKSTVEQCKPLVGQDMANAFQQSLLLFEQHPFSNQPDIYLQLIGFVRQILKKIPKFLEPSMLAFTS 837 (982)
T ss_pred hHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHhCcCccccchHHHHH
Confidence 110100001 11111111122222222222222222222222 245666666777888888888764443 3333
Q ss_pred H-HHHHHHhhcCCCCCChhhhhhHHHHHHHHHHHHhhcC
Q 001487 965 A-LSRLNVVIRHPNALQPENLMAYDNAVSALGKICQFHR 1002 (1069)
Q Consensus 965 ~-l~~L~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~~~ 1002 (1069)
+ +..-.+.+..|. +....+++.-+..++.+..
T Consensus 838 ~i~~~a~~ll~~pE------~~~i~aa~qF~t~~~~~~~ 870 (982)
T KOG2022|consen 838 LILICAFILLNSPE------PTTIRAASQFLTALATYAT 870 (982)
T ss_pred HHHHHHHHhcCCCc------cHHHHHHHHHHHHHHhhcc
Confidence 3 335556666663 2333444444444444433
No 222
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=93.68 E-value=13 Score=42.80 Aligned_cols=111 Identities=19% Similarity=0.267 Sum_probs=72.9
Q ss_pred CchhhHHHHHHhhcCCChhHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhCCc
Q 001487 140 GWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSS 219 (1069)
Q Consensus 140 ~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~ 219 (1069)
.-..++|.|...+.+.+..+++.++.++..+.+..+..+ .-+.++|.+.+.........|+..++-|++.+++.++
T Consensus 386 ~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~--vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD-- 461 (700)
T KOG2137|consen 386 VKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPF--VKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLD-- 461 (700)
T ss_pred HHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHH--HHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHH--
Confidence 445678888888888888888889998888888765332 2345667666544333477888889999998887652
Q ss_pred chHhHHHhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHc
Q 001487 220 ADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAG 260 (1069)
Q Consensus 220 ~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~ 260 (1069)
.- ..++.+ ..+..+.+..++......+.+...+.-
T Consensus 462 --~~---~v~d~~-lpi~~~~~~~dp~iv~~~~~i~~~l~~ 496 (700)
T KOG2137|consen 462 --KA---AVLDEL-LPILKCIKTRDPAIVMGFLRIYEALAL 496 (700)
T ss_pred --HH---HhHHHH-HHHHHHhcCCCcHHHHHHHHHHHHHHh
Confidence 11 112222 233445556677777777666665554
No 223
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=93.59 E-value=9.4 Score=38.77 Aligned_cols=194 Identities=15% Similarity=0.121 Sum_probs=110.3
Q ss_pred CCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHc---cCCCHHHHHHHHHHHHhhcccCCCCcccCCCHHHHHHHHHHHH
Q 001487 33 STSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQ---RSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLL 109 (1069)
Q Consensus 33 s~d~~~r~~A~~~L~~~~~~~p~~~~~~L~~il~---~~~~~~~R~~a~i~L~~~i~~~~~~~w~~l~~~~~~~i~~~ll 109 (1069)
..+++.....-+.|.++...+- ...+..++.+. +......+..+..++-.+.+.. +.....++..+.
T Consensus 12 ~~~~~~~~~~L~~L~~l~~~~~-~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~---------~r~f~~L~~~L~ 81 (234)
T PF12530_consen 12 ISDPELQLPLLEALPSLACHKN-VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKAN---------DRHFPFLQPLLL 81 (234)
T ss_pred CCChHHHHHHHHHHHHHhccCc-cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhC---------chHHHHHHHHHH
Confidence 3456667777777777655321 22344555444 3444555666766666654443 112234443333
Q ss_pred H----HHh----hcchhhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhh-cCCChhHHHHHHHHHHHhhhhhhhhcch
Q 001487 110 Q----SIQ----LESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCV-SSDSVKLQESAFLIFAQLSQYIGDTLTP 180 (1069)
Q Consensus 110 ~----~l~----~e~~~~vr~~~~~~i~~i~~~~~~~~~w~~ll~~l~~~~-~~~~~~~r~~al~~l~~l~~~~~~~~~~ 180 (1069)
. ... .+.........+..+..+.+. .| +.|+++++.+..++ .+.++..+..+++.+..+|+.-.-++.
T Consensus 82 ~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~-~p-~~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vvd~~- 158 (234)
T PF12530_consen 82 LLILRIPSSFSSKDEFWECLISIAASIRDICCS-RP-DHGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVVDFY- 158 (234)
T ss_pred HHHhhcccccCCCcchHHHHHHHHHHHHHHHHh-Ch-hhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhccHH-
Confidence 3 111 112334445556677777774 45 49999999999999 788888999999999999965333322
Q ss_pred hHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhCC-cchHhHHHhhHHHHHHHHHHHHhCCChH
Q 001487 181 HLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTS-SADRDRFQDLLPLMMRTLTESLNNGNEA 246 (1069)
Q Consensus 181 ~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~-~~~~~~~~~~~~~~l~~l~~~l~~~~~~ 246 (1069)
.....+..-+..+..+.|-.. +.+++..++. ..+.+.+..+...+++.+++.....+.+
T Consensus 159 ---s~w~vl~~~l~~~~rp~v~~~----l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~~~ 218 (234)
T PF12530_consen 159 ---SAWKVLQKKLSLDYRPLVLKS----LCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSDVN 218 (234)
T ss_pred ---HHHHHHHHhcCCccchHHHHH----HHHHHHHhccccCChhhhhHHHHHHHHHHHhhccccccc
Confidence 223334433444334444433 3343333321 1233456666778888888877665543
No 224
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=93.54 E-value=0.75 Score=49.58 Aligned_cols=123 Identities=15% Similarity=0.205 Sum_probs=79.8
Q ss_pred HHhhCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCC-----C-ChhHHHHHHHHHHHhhhcCCccc
Q 001487 423 VLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDF-----Q-NPRVQAHAASAVLNFSENCTPEI 496 (1069)
Q Consensus 423 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~-----~-~~~v~~~a~~al~~l~~~~~~~~ 496 (1069)
+.+.+.+.+...|..|+..|.. ..-+.+++|.++..+.+. . +...-...+..+..++.+-.- .
T Consensus 183 It~a~~~~~~~~r~~aL~sL~t----------D~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l-~ 251 (343)
T cd08050 183 ITEALVGSNEEKRREALQSLRT----------DPGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNL-H 251 (343)
T ss_pred HHHHHhCCCHHHHHHHHHHhcc----------CCCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCC-c
Confidence 3334445677778887776643 234555666655554431 1 233344555666666666443 4
Q ss_pred ccCchHHHHHHHHHHhh----------cCChhHHHHHHHHHHHHHHhhHhhhHhhHhhhhHHHHHHHhhc
Q 001487 497 LTPYLDGIVSKLLVLLQ----------NGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNA 556 (1069)
Q Consensus 497 ~~~~l~~i~~~l~~~l~----------~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~ 556 (1069)
+.+|+-.++|.++.|+- +.+..+|+.|...++.+++.++.......+.++..+.+.+.+.
T Consensus 252 le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~ 321 (343)
T cd08050 252 LEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDP 321 (343)
T ss_pred hHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCC
Confidence 78999999999999873 2346899999999999999887764445566666666666543
No 225
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=93.46 E-value=5.6 Score=39.99 Aligned_cols=99 Identities=15% Similarity=0.130 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHHHhhhchhhhHHHHHhhhhhhhc----CCCCHH-----HHHHHHHHHHHHHhHhhhhhhhhhHhHHH
Q 001487 856 VFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWG----KDKTAE-----ERRIAICIFDDVAEQCREAALKYYETYLP 926 (1069)
Q Consensus 856 ~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~----~~~~~~-----~r~~a~~~l~~l~~~~~~~~~~~~~~l~~ 926 (1069)
....+.....++.+.-.-.+-||+.+++|.++.++- .+...+ .|..|..+++-++..++.......+.+..
T Consensus 252 ~LtTv~~m~~sLL~N~~iFvdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtr 331 (450)
T COG5095 252 KLTTVVMMYSSLLKNKYIFVDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTR 331 (450)
T ss_pred HHHHHHHHHHHHhcCCceeecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHH
Confidence 344555666666655444457999999998886542 122222 68889999999999999887777788888
Q ss_pred HHHhhccC--CChhHHHhhhHHHHHHHhhc
Q 001487 927 FLLEACND--ENQDVRQAAVYGLGVCAEFG 954 (1069)
Q Consensus 927 ~ll~~l~~--~~~~vr~~a~~~lg~l~~~~ 954 (1069)
.+++.+-| ......-.|.+|+..+-...
T Consensus 332 TllKafLD~~k~~sT~YGalkgls~l~ke~ 361 (450)
T COG5095 332 TLLKAFLDREKTESTQYGALKGLSILSKEV 361 (450)
T ss_pred HHHHHHHhcccccchhhhhhhhhhhhchhh
Confidence 88777654 33566667777777665543
No 226
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=93.37 E-value=15 Score=40.45 Aligned_cols=166 Identities=13% Similarity=0.185 Sum_probs=95.4
Q ss_pred HHHHhHHHHHHHHHhhCCC-------CChhHHHHHHHHHHHhHhhh--chhHHhhhhhhhHHHHHhhccCCCC-hhHHHH
Q 001487 411 VMVKNLEQVLSMVLNSFRD-------PHPRVRWAAINAIGQLSTDL--GPDLQNQFHPQVLPALAGAMDDFQN-PRVQAH 480 (1069)
Q Consensus 411 ~~~~~~~~i~~~l~~~l~d-------~~~~vr~~a~~~l~~l~~~~--~~~~~~~~~~~il~~l~~~l~~~~~-~~v~~~ 480 (1069)
.+.++++-+++.+..-+.. .+.++...|+++++.+.-.. ...+..++...++...+..+.+... +.+...
T Consensus 32 ~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~ 111 (372)
T PF12231_consen 32 ALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPNSPKSICTH 111 (372)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 3445555555555554433 25577788999998876431 1112123344577777778766332 344444
Q ss_pred HHHHHHHhhhcCCcccccCchHHHHHHHHHHhhc--CChhHHHHHHHHHHHHHHhhHhhhHhhHhhhhHHHHHHHhhccC
Q 001487 481 AASAVLNFSENCTPEILTPYLDGIVSKLLVLLQN--GKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATD 558 (1069)
Q Consensus 481 a~~al~~l~~~~~~~~~~~~l~~i~~~l~~~l~~--~~~~v~~~al~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~ 558 (1069)
..+.|.. +.+++..+.......+-..+..+.+ ++..+-...+.++..+....+..+......-+|.+...+-+.
T Consensus 112 ~l~~ls~--Q~f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~-- 187 (372)
T PF12231_consen 112 YLWCLSD--QKFSPKIMTSDRVERLLAALHNIKNRFPSKSIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSS-- 187 (372)
T ss_pred HHHHHHc--CCCCCcccchhhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--
Confidence 4444432 3455554444433333333333332 456677888899999998888877766666666666655442
Q ss_pred ccccchhhHHHHHHHHHHHhhChh
Q 001487 559 KSNRMLRAKSMECISLVGMAVGKD 582 (1069)
Q Consensus 559 ~~~~~lr~~a~~~l~~l~~~~~~~ 582 (1069)
...+|.+|+.+...+...+|++
T Consensus 188 --~k~ir~~a~~l~~~~~~~l~~~ 209 (372)
T PF12231_consen 188 --AKDIRTKAISLLLEAKKCLGPN 209 (372)
T ss_pred --chHHHHHHHHHHHHHHHHhChh
Confidence 2346777777766666666643
No 227
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=93.37 E-value=2 Score=41.86 Aligned_cols=188 Identities=13% Similarity=0.128 Sum_probs=103.9
Q ss_pred HHHHhhcCChhHHHHHHHHHHHHHHhhHhhhHhhHhhhhHHHHHHHhhccCccccchhhHHHHHHHHHHHhhChhhhhhh
Q 001487 508 LLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDD 587 (1069)
Q Consensus 508 l~~~l~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~ 587 (1069)
+...++-.....-..++.+++.+....|....|++..++..+.+.-.+. ....|..+=.|+|...+++|++.|...
T Consensus 5 ~e~~L~~~y~~aw~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~----~f~~~~~~e~~lgaAi~amGpe~vL~~ 80 (198)
T PF08161_consen 5 LESLLSYRYQHAWPEVLNVLSALFEKLGERSSPLLKPILKTLGDLRESE----DFSFRKELEQVLGAAIRAMGPEQVLSI 80 (198)
T ss_pred HHHHhCcchHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCC----CcchHHHHHHHHHHHHHHCCHHHHHHH
Confidence 3344444445667788999999999999887788888877777754332 256788888999999999998865432
Q ss_pred HHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHHHhcCCcccchhhhhHHHHHhcccCCCccccCCCCccccccCCCcc
Q 001487 588 AKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDS 667 (1069)
Q Consensus 588 ~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ 667 (1069)
+++ ++.+ -+..++-|...+-.+..- ..+..+.-|...++|..-..-+...+.. . ..+.
T Consensus 81 ----lPL--nl~~--~~~~~~~raWLLPlLr~~--i~~~~L~fF~~~~lPla~~~~~~~~~~~--~----------~~~~ 138 (198)
T PF08161_consen 81 ----LPL--NLDN--ADDSQPGRAWLLPLLRDH--IRNASLSFFVEEFLPLARRLRQKAQKAS--E----------AGKS 138 (198)
T ss_pred ----CCC--CccC--CCcCCcccchhHHHHHHh--ccCCChHHHHHHHHHHHHHHHHHHHHHh--h----------ccch
Confidence 111 1110 011122233333222221 1244555566666665433221100000 0 0000
Q ss_pred cchhhcCCceeeeccchHHHH---HHHHHHHHHHHHHh--hhcccccHHHHHHHHhhccCCcCChHHHHHHHHhHHHH
Q 001487 668 METITLGDKRIGIKTSVLEEK---ATACNMLCCYADEL--KEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPEL 740 (1069)
Q Consensus 668 ~~~~~~~~~~~~v~~~~~~~k---~~a~~~l~~l~~~~--~~~~~p~~~~~~~~l~~~l~~~~~~~ir~~a~~~l~~l 740 (1069)
.+.| ....+.++-+-..| +.++...++.+.+.+...+.+ .+++|...+.+|..|
T Consensus 139 -----------------~~ak~~~~l~~QlWslLP~FC~~P~D~~~~F~~~a~~L~~~L~~--~~~LR~~Ic~aL~~L 197 (198)
T PF08161_consen 139 -----------------VEAKIYETLVQQLWSLLPGFCNYPTDLAESFPSFAKLLGNALYD--QPDLRPIICQALRRL 197 (198)
T ss_pred -----------------HHHHHHHHHHHHHHHHhHHhcCCcccHHHHHHHHHHHHHHHHhc--CcchHHHHHHHHHHH
Confidence 1111 12233344444333 445555557777777777775 578888888887765
No 228
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=93.32 E-value=2.6 Score=44.19 Aligned_cols=154 Identities=18% Similarity=0.218 Sum_probs=116.0
Q ss_pred HHHhhcCCChHHHHHHHHHHHHHHh--hcHHHHHHhHHHHHHHHHhhCCCCCh-hHHHHHHHHHHHhHhhhchhHHhhhh
Q 001487 382 LPAYLAAPEWQKHHAALIALAQIAE--GCAKVMVKNLEQVLSMVLNSFRDPHP-RVRWAAINAIGQLSTDLGPDLQNQFH 458 (1069)
Q Consensus 382 l~~~l~~~~~~~r~aal~~l~~l~~--~~~~~~~~~~~~i~~~l~~~l~d~~~-~vr~~a~~~l~~l~~~~~~~~~~~~~ 458 (1069)
+..+-...+|-.--+++.-+....+ .......++-..+...+-++|+-.-| .|-..|+.+...+.+.+++.-....+
T Consensus 16 L~~Fe~~~EWAD~is~L~kL~k~lq~~~~~~~~IP~k~~v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~dl 95 (307)
T PF04118_consen 16 LKSFESSSEWADYISFLGKLLKALQNSNNQFPYIPHKLQVSKRLAQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQDL 95 (307)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHhccCCCCceeCcHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhhc
Confidence 3333345667766666655555554 11112223333566777778765443 68888999999999988877667778
Q ss_pred hhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhHhh
Q 001487 459 PQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEH 537 (1069)
Q Consensus 459 ~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~i~~~l~~~l~~~~~~v~~~al~~l~~l~~~~~~~ 537 (1069)
.-..+.++..+.. ..-.||......+..+.-.+++ .+.|.++.++..++..+++.+.+..+.++..+..+...++.+
T Consensus 96 ~i~~~GLfpl~~~-asi~Vkp~lL~i~e~~~lpL~~-~L~p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~~ 172 (307)
T PF04118_consen 96 PIYSPGLFPLFSY-ASIQVKPQLLDIYEKYYLPLGP-ALRPCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGDK 172 (307)
T ss_pred HHHHHHHHHHHHH-HHHhhHHHHHHHHHHHhcCccH-HHHHHHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcChh
Confidence 8888888888887 6778888888888888777776 688999999999999999999999999999999999888876
No 229
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=93.31 E-value=8.5 Score=41.10 Aligned_cols=234 Identities=15% Similarity=0.147 Sum_probs=116.9
Q ss_pred HHHHHHccCCCHHHHHHHHHHHHhhcccCCCCcccCCCHHHHHHHHHHHHHHHhhc-------chhhHHHHHHHHHHHHH
Q 001487 60 KLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLE-------SAKSISKKLCDTVSELA 132 (1069)
Q Consensus 60 ~L~~il~~~~~~~~R~~a~i~L~~~i~~~~~~~w~~l~~~~~~~i~~~ll~~l~~e-------~~~~vr~~~~~~i~~i~ 132 (1069)
-+.+++.+..++.+|.+.-.+|.....+. --++.- .++.+...+++.+..- .....-+.+++.+..+.
T Consensus 227 ~l~~ll~~~v~~d~~eM~feila~~aend----~Vkl~l-a~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vlll 301 (604)
T KOG4500|consen 227 MLLQLLPSMVREDIDEMIFEILAKAAEND----LVKLSL-AQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLL 301 (604)
T ss_pred HHHHHHHHhhccchhhHHHHHHHHHhcCc----ceeeeh-hhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhh
Confidence 34455555556666666666666655543 111111 1233444444444431 12233444555544443
Q ss_pred hcccC---CCCchhhHHHHHHhhcCCChhHHHHHHHHHHHhhhhhhhhcc----hhHHHHHHHHHHhhcCCCChHHHHHH
Q 001487 133 SNILP---ENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLT----PHLKHLHAVFLNCLTNSNNPDVKIAA 205 (1069)
Q Consensus 133 ~~~~~---~~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~----~~~~~l~~~l~~~l~~~~~~~vr~~a 205 (1069)
..+-. ...-|.++.++..|+.|.+.+....+..+++.++....--+. ..++.++..+.+--.-.++..++.++
T Consensus 302 tGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~ 381 (604)
T KOG4500|consen 302 TGDESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHAC 381 (604)
T ss_pred cCchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHH
Confidence 32111 013477999999999999999999999999999876443222 23444444444311111367788889
Q ss_pred HHHHHHHHHhhCCcchHhHHHhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHccccHHHHHh--HHHHHHHHHHHhcC
Q 001487 206 LNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQ--LVDVVGSMLQIAEA 283 (1069)
Q Consensus 206 ~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--~~~l~~~l~~~~~~ 283 (1069)
+.++..++.-.++ ...+.+ ..+.+.+...++...|.+....+..+.-+...-+...... -+.+++.+......
T Consensus 382 lsALRnl~IPv~n---ka~~~~--aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks 456 (604)
T KOG4500|consen 382 LSALRNLMIPVSN---KAHFAP--AGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKS 456 (604)
T ss_pred HHHHHhccccCCc---hhhccc--cchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhC
Confidence 9999988754332 111111 0233344444444455554444444433332221111110 12344444444433
Q ss_pred CCcchHHHHHHHHHHHHHHHh
Q 001487 284 ESLEEGTRHLAIEFVITLAEA 304 (1069)
Q Consensus 284 ~~~~~~~r~~a~~~l~~l~~~ 304 (1069)
+| ...+...+...+..++++
T Consensus 457 ~D-~aGv~gESnRll~~lIkH 476 (604)
T KOG4500|consen 457 PD-FAGVAGESNRLLLGLIKH 476 (604)
T ss_pred Cc-cchhhhhhhHHHHHHHHh
Confidence 32 223444455566666664
No 230
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=93.30 E-value=19 Score=41.55 Aligned_cols=175 Identities=14% Similarity=0.138 Sum_probs=111.3
Q ss_pred hhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCcchhhHHHHHHHHHHHcCCccchHHHHHHHHHhhcCCChHHHHH
Q 001487 317 QFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHA 396 (1069)
Q Consensus 317 ~~~~~l~~~l~~~l~~~~~~~~~~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~a 396 (1069)
.|...++|.+...+...... + ..-.-.+-++.+.+..+++.+...++|.+...+++.+....+.
T Consensus 345 ~~~~~~~p~l~pi~~~~~~~--------------~--~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~ 408 (700)
T KOG2137|consen 345 EFGPKMLPALKPIYSASDPK--------------Q--ALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQEL 408 (700)
T ss_pred hhhhhhhHHHHHHhccCCcc--------------c--chhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHH
Confidence 46677888887766542211 0 1112334456667777777889999999999999999999999
Q ss_pred HHHHHHHHHhhcHHHHHHhHHHHHHHHHh-hCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCCh
Q 001487 397 ALIALAQIAEGCAKVMVKNLEQVLSMVLN-SFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNP 475 (1069)
Q Consensus 397 al~~l~~l~~~~~~~~~~~~~~i~~~l~~-~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~ 475 (1069)
++..+..+++...... .-..|+|.+.+ .++..+..|+..++-|++.+++.+.. ...++.+.| ++++.+. .++
T Consensus 409 ~L~~lptv~e~iD~~~--vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD~---~~v~d~~lp-i~~~~~~-~dp 481 (700)
T KOG2137|consen 409 ALQILPTVAESIDVPF--VKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLDK---AAVLDELLP-ILKCIKT-RDP 481 (700)
T ss_pred HHHhhhHHHHhccHHH--HHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHHH---HHhHHHHHH-HHHHhcC-CCc
Confidence 9999999888765211 12345665544 45678889999999999999865532 123444444 4455555 567
Q ss_pred hHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcC
Q 001487 476 RVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNG 515 (1069)
Q Consensus 476 ~v~~~a~~al~~l~~~~~~~~~~~~l~~i~~~l~~~l~~~ 515 (1069)
.+..........+.-..... ..-....++|.+..+...+
T Consensus 482 ~iv~~~~~i~~~l~~~~~~g-~ev~~~~VlPlli~ls~~~ 520 (700)
T KOG2137|consen 482 AIVMGFLRIYEALALIIYSG-VEVMAENVLPLLIPLSVAP 520 (700)
T ss_pred HHHHHHHHHHHHHHhhcccc-eeeehhhhhhhhhhhhhcc
Confidence 77666666655554332211 1223455666666554443
No 231
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=93.29 E-value=0.88 Score=37.80 Aligned_cols=74 Identities=22% Similarity=0.265 Sum_probs=62.2
Q ss_pred hHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhHhh
Q 001487 461 VLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEH 537 (1069)
Q Consensus 461 il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~i~~~l~~~l~~~~~~v~~~al~~l~~l~~~~~~~ 537 (1069)
.+...+..+.| +.+.+|..+...|..+++.-. ......+.++..++..++++++.|--.|+.+++.++...++.
T Consensus 4 ~~~~al~~L~d-p~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~ 77 (92)
T PF10363_consen 4 TLQEALSDLND-PLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDE 77 (92)
T ss_pred HHHHHHHHccC-CCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHH
Confidence 35566778889 889999999999999998766 123567899999999999999999999999999999876654
No 232
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=93.14 E-value=13 Score=39.12 Aligned_cols=111 Identities=18% Similarity=0.165 Sum_probs=77.0
Q ss_pred HHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhh
Q 001487 410 KVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFS 489 (1069)
Q Consensus 410 ~~~~~~~~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~ 489 (1069)
..+.+.++.++..++.++.|++..+...+...+..+...++.. .++..+...+.. ++.+|..|...+..-.
T Consensus 130 ~~L~p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~~-------~F~~~lwl~ii~--sp~~Rl~al~~l~~~l 200 (307)
T PF04118_consen 130 PALRPCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGDK-------YFWQCLWLCIIT--SPSRRLGALNYLLRRL 200 (307)
T ss_pred HHHHHHHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcChh-------HHHHHHHHHHhc--CcchhHHHHHHHHHhC
Confidence 3455677788888999999999999999999999988777653 344555555554 6888888877766554
Q ss_pred hcCC-----------cccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHH
Q 001487 490 ENCT-----------PEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALAS 529 (1069)
Q Consensus 490 ~~~~-----------~~~~~~~l~~i~~~l~~~l~~~~~~v~~~al~~l~~ 529 (1069)
.... ...+.+--.-++.++..++++.+.-|+..++..+-.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~Llv~al~~~L~D~~iLVqR~~LDlLl~ 251 (307)
T PF04118_consen 201 PKFQNDELSLSSEEQEYCLGPDPGLLVRALCACLEDENILVQRGFLDLLLS 251 (307)
T ss_pred CcccccccccchHHHHHhcCCCccHHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence 4332 112334445567888888888877777776665544
No 233
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=93.04 E-value=0.62 Score=50.80 Aligned_cols=115 Identities=23% Similarity=0.267 Sum_probs=84.9
Q ss_pred hcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCC-CCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHH
Q 001487 386 LAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFR-DPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPA 464 (1069)
Q Consensus 386 l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~ 464 (1069)
.++.|-.+|.||..+||-++-.-++ .++..++.|. +-|+.||...+.+||-.|...+... .-.++.
T Consensus 561 vsD~nDDVrRAAViAlGfvc~~D~~--------~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~----a~diL~- 627 (926)
T COG5116 561 VSDGNDDVRRAAVIALGFVCCDDRD--------LLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV----ATDILE- 627 (926)
T ss_pred cccCchHHHHHHHHheeeeEecCcc--------hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH----HHHHHH-
Confidence 5678899999999999987643222 3333334444 5689999999999999886655322 223333
Q ss_pred HHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCCh
Q 001487 465 LAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQ 517 (1069)
Q Consensus 465 l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~i~~~l~~~l~~~~~ 517 (1069)
..+.| ++.-||..|+-+++.+...+.++ +.|....|...+.+++.+.+.
T Consensus 628 --~L~~D-~~dfVRQ~AmIa~~mIl~Q~n~~-Lnp~v~~I~k~f~~vI~~Khe 676 (926)
T COG5116 628 --ALMYD-TNDFVRQSAMIAVGMILMQCNPE-LNPNVKRIIKKFNRVIVDKHE 676 (926)
T ss_pred --HHhhC-cHHHHHHHHHHHHHHHHhhcCcc-cChhHHHHHHHHHHHHhhhhH
Confidence 34456 77899999999999999888865 779999999999998887654
No 234
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=92.82 E-value=0.92 Score=48.90 Aligned_cols=127 Identities=16% Similarity=0.176 Sum_probs=82.6
Q ss_pred HHHHHHHHcCCccchHHHHHHHHHhhc--CC-ChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhC----------
Q 001487 361 CLDRLAIALGGNTIVPVASEQLPAYLA--AP-EWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSF---------- 427 (1069)
Q Consensus 361 ~l~~l~~~~~~~~~~~~l~~~l~~~l~--~~-~~~~r~aal~~l~~l~~~~~~~~~~~~~~i~~~l~~~l---------- 427 (1069)
+|..+...-|-..++|.+..++.+.+. .. ++..-...+.+..++..+..-.+.+|+.+++|.++.++
T Consensus 198 aL~sL~tD~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~ 277 (343)
T cd08050 198 ALQSLRTDPGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPP 277 (343)
T ss_pred HHHHhccCCCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCC
Confidence 455554433334455555555554433 12 56666666777777777666577889999999888776
Q ss_pred CCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChh-HHHHHHHHHHHh
Q 001487 428 RDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPR-VQAHAASAVLNF 488 (1069)
Q Consensus 428 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~-v~~~a~~al~~l 488 (1069)
.+.++.+|.-|+..++.++..++... ....+.++..+.+.+.|...+. ..-.|...|..+
T Consensus 278 ~~~h~~LRd~AA~ll~~i~~~f~~~y-~~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~l 338 (343)
T cd08050 278 DDNHWALRDYAARLLAQICRKFSTSY-NTLQPRITRTLLKALLDPKKPLTTHYGAIVGLSAL 338 (343)
T ss_pred CchHHHHHHHHHHHHHHHHHHcCCCC-CcHHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHh
Confidence 34578999999999999999887654 3456677778888887733232 234444444443
No 235
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=92.79 E-value=30 Score=42.39 Aligned_cols=132 Identities=16% Similarity=0.176 Sum_probs=95.8
Q ss_pred hHHHHHHHHHHHcCCccchHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhc-H----HHHHHhHH-HHHHHHHhhCCCC
Q 001487 357 VGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGC-A----KVMVKNLE-QVLSMVLNSFRDP 430 (1069)
Q Consensus 357 ~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~-~----~~~~~~~~-~i~~~l~~~l~d~ 430 (1069)
.-...|..++...| ..+.+. +..+...+++.+...|.+.+.+++.+.... . +...+.+. .++..+...+.|-
T Consensus 294 ~v~~fL~elS~~~P-~l~~~~-l~~lv~lld~es~~lRnavlei~~n~V~~~l~d~e~~~~sk~~r~~~le~l~erl~Dv 371 (1251)
T KOG0414|consen 294 IVGNFLVELSERVP-KLMLRQ-LTLLVDLLDSESYTLRNAVLEICANLVASELRDEELEEMSKSLRDELLELLRERLLDV 371 (1251)
T ss_pred hHHHHHHHHHHHhH-HHHHHH-HHHHHHhcCCchHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHhhcc
Confidence 34456667776665 333333 233444677888999999999998876432 1 12222333 4888999999999
Q ss_pred ChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCC
Q 001487 431 HPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCT 493 (1069)
Q Consensus 431 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~ 493 (1069)
++.||..++..+..+++.-... ......++..++..+.| ++.-||..|+..+..+....+
T Consensus 372 sa~vRskVLqv~~~l~~~~s~p--~~~~~eV~~la~grl~D-kSslVRk~Ai~Ll~~~L~~~P 431 (1251)
T KOG0414|consen 372 SAYVRSKVLQVFRRLFQQHSIP--LGSRTEVLELAIGRLED-KSSLVRKNAIQLLSSLLDRHP 431 (1251)
T ss_pred cHHHHHHHHHHHHHHHHccCCC--ccHHHHHHHHHhccccc-ccHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999888653322 35678899999999999 899999999999999887643
No 236
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=92.68 E-value=11 Score=37.10 Aligned_cols=232 Identities=15% Similarity=0.151 Sum_probs=115.2
Q ss_pred CCccCchhHHHHHHHHh----CCChHHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHccCCCHHHHHH
Q 001487 1 MAAESTHLQQSQLAVIL----GPDSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAM 76 (1069)
Q Consensus 1 ~~~~~~~~~~~~~~~~~----~~~~~~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~~p~~~~~~L~~il~~~~~~~~R~~ 76 (1069)
||.-|.|+...|-.+-. ..+.+.+.+....+-+| +.|..|..+|-+-.+..|+ ..+.+++-+..
T Consensus 1 M~~~p~p~~s~~~~~~~p~~~~~~~dk~~~~i~~l~~~--p~rE~aL~ELskkre~~~d-lA~~lW~s~g~--------- 68 (293)
T KOG3036|consen 1 MANLPSPAMSKQQQTPSPGSNASNNDKAYQLILSLVSP--PTREMALLELSKKREPFPD-LAPMLWHSFGT--------- 68 (293)
T ss_pred CCCCCCCccchhccCCCCCcccccccchhhHHHHhhCC--chHHHHHHHHHHhccCCcc-ccHHHHHhcch---------
Confidence 77788766655444300 12334455666555544 5666666666544332333 23444443321
Q ss_pred HHHHHHhhcccCCCCcccCCCHHHHHHHHH--HHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCchhh-HHHHHHhhc
Q 001487 77 AAVLLRKLLTRDDSFLWPRLSLHTQSSLKS--MLLQSIQLESAKSISKKLCDTVSELASNILPENGWPEL-LPFMFQCVS 153 (1069)
Q Consensus 77 a~i~L~~~i~~~~~~~w~~l~~~~~~~i~~--~ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~~~~w~~l-l~~l~~~~~ 153 (1069)
..-+|...+.-...-.-..+++.+-+.+-+ .|+|.+.++ ++.|....+ ...|-+ .|++-....
T Consensus 69 ~~~LLqEivaiYp~l~p~~l~~~qsnRVcnaL~LlQcvASH--pdTr~~FL~------------A~iPlylYpfL~Tt~~ 134 (293)
T KOG3036|consen 69 MVALLQEIVAIYPSLSPPTLTPAQSNRVCNALALLQCVASH--PDTRRAFLR------------AHIPLYLYPFLNTTSK 134 (293)
T ss_pred HHHHHHHHHhcccccCCCCCCccccchHHHHHHHHHHHhcC--cchHHHHHH------------ccChhhhHHhhhcccc
Confidence 122333333321000011222222222222 355555543 334443211 233443 344444333
Q ss_pred -CCChhHHHHHHHHHHHhhhhhhhhcch--hHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhCCc----chHhHHH
Q 001487 154 -SDSVKLQESAFLIFAQLSQYIGDTLTP--HLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSS----ADRDRFQ 226 (1069)
Q Consensus 154 -~~~~~~r~~al~~l~~l~~~~~~~~~~--~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~----~~~~~~~ 226 (1069)
.+....|..++-+++.+++........ ...+++|..++.+..+ ++.-+..|..++..++..-.+- ...+.|.
T Consensus 135 ~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~G-SelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~ 213 (293)
T KOG3036|consen 135 SRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESG-SELSKTVATFILQKILLDDVGLYYICQTAERFS 213 (293)
T ss_pred CCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcc-cHHHHHHHHHHHHHHhhccccHHHHHHhHHHHH
Confidence 345678999999999999886655333 2356899999999987 7788888888888776532110 0112222
Q ss_pred hhHHHHH-HHHHHHHhCCChHHHHHHHHHHHHHHc
Q 001487 227 DLLPLMM-RTLTESLNNGNEATAQEALELLIELAG 260 (1069)
Q Consensus 227 ~~~~~~l-~~l~~~l~~~~~~~~~~~~~~l~~l~~ 260 (1069)
. +..++ +.+.+..+.+++...+.+++|...+..
T Consensus 214 a-v~~~L~kmv~~l~~~ps~RllKhviRcYlrLsd 247 (293)
T KOG3036|consen 214 A-VALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSD 247 (293)
T ss_pred H-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Confidence 1 11122 222333344455555666666665544
No 237
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=92.62 E-value=6.6 Score=39.17 Aligned_cols=59 Identities=22% Similarity=0.393 Sum_probs=35.6
Q ss_pred HHHHHHhhCCC--CChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhh
Q 001487 419 VLSMVLNSFRD--PHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFS 489 (1069)
Q Consensus 419 i~~~l~~~l~d--~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~ 489 (1069)
-++.+...+.| ..|.||..|..+||.+.. +.+.+.+-+..++ +...|+..+..|+..+-
T Consensus 68 Av~~l~~vl~desq~pmvRhEAaealga~~~-----------~~~~~~l~k~~~d-p~~~v~ETc~lAi~rle 128 (289)
T KOG0567|consen 68 AVPVLVEVLLDESQEPMVRHEAAEALGAIGD-----------PESLEILTKYIKD-PCKEVRETCELAIKRLE 128 (289)
T ss_pred hhHHHHHHhcccccchHHHHHHHHHHHhhcc-----------hhhHHHHHHHhcC-CccccchHHHHHHHHHH
Confidence 45555555554 467788888888877651 2333444444456 67777777666666653
No 238
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=92.44 E-value=2.6 Score=38.68 Aligned_cols=95 Identities=16% Similarity=0.118 Sum_probs=70.3
Q ss_pred CchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhHhhhHhhH--hhhhHHHHHHHhhccCccccchhhHHHHHHHHHH
Q 001487 499 PYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYY--DAVMPFLKAILVNATDKSNRMLRAKSMECISLVG 576 (1069)
Q Consensus 499 ~~l~~i~~~l~~~l~~~~~~v~~~al~~l~~l~~~~~~~~~~~~--~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~l~ 576 (1069)
..-...+..+.+-+.+.++.++..|+..+..++..+|..|...+ ..++..|..++..........+|.++++.+...+
T Consensus 38 ~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~ 117 (140)
T PF00790_consen 38 DGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWA 117 (140)
T ss_dssp THHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHH
Confidence 34567788899999999999999999999999999999887654 4567777777665443333338999999999999
Q ss_pred HhhChhhhhhhHHHHHH
Q 001487 577 MAVGKDKFRDDAKQVME 593 (1069)
Q Consensus 577 ~~~~~~~~~~~~~~i~~ 593 (1069)
..++...-.+++.++.+
T Consensus 118 ~~f~~~~~~~~i~~~y~ 134 (140)
T PF00790_consen 118 EAFKSDPELSLIQDTYK 134 (140)
T ss_dssp HHTTTSTTGHHHHHHHH
T ss_pred HHHCCCCCchHHHHHHH
Confidence 88754433344444443
No 239
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.33 E-value=8.3 Score=47.59 Aligned_cols=82 Identities=16% Similarity=0.151 Sum_probs=54.0
Q ss_pred hHHHHHHhhccCCChhHHHhhhHHHHHHHhhcCCCchH--HHHHHHHHHHHhhcCCCCCC------hhh-hhhHHHHHHH
Q 001487 923 TYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKP--LVGEALSRLNVVIRHPNALQ------PEN-LMAYDNAVSA 993 (1069)
Q Consensus 923 ~l~~~ll~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~--~~~~~l~~L~~~l~~~~~~~------~~~-~~~~~~~~~~ 993 (1069)
-++..+.+++.|+.+.||+.|+-.+=+++...+..+.+ |-.-+++.+.++|.....++ .+. ..-.+..+-.
T Consensus 997 ~ll~~L~~~~~dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~lt 1076 (1610)
T KOG1848|consen 997 MLLVHLADLCEDSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSCLT 1076 (1610)
T ss_pred HHHHHHHHHhccchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhhhh
Confidence 34455666777888999999999999999999888777 54555666666665332211 111 3334556666
Q ss_pred HHHHHhhcCCC
Q 001487 994 LGKICQFHRDS 1004 (1069)
Q Consensus 994 l~~i~~~~~~~ 1004 (1069)
++-|++.+++.
T Consensus 1077 isgIaklf~e~ 1087 (1610)
T KOG1848|consen 1077 ISGIAKLFSEN 1087 (1610)
T ss_pred HHHHHHHHHHH
Confidence 66666666554
No 240
>PF05536 Neurochondrin: Neurochondrin
Probab=91.93 E-value=29 Score=40.26 Aligned_cols=235 Identities=16% Similarity=0.181 Sum_probs=128.1
Q ss_pred HHHHHHHHccCCCHHHHHHHHHHHHhhcccCCCCcccCCCHH----HHHHHHHHHHHHHhhc-------chhhHHHHHHH
Q 001487 58 TLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLH----TQSSLKSMLLQSIQLE-------SAKSISKKLCD 126 (1069)
Q Consensus 58 ~~~L~~il~~~~~~~~R~~a~i~L~~~i~~~~~~~w~~l~~~----~~~~i~~~ll~~l~~e-------~~~~vr~~~~~ 126 (1069)
+.-++.+|... +.+-|..+..++++.++..+ .... ..+.+--.++..|... +....+..+..
T Consensus 7 l~~c~~lL~~~-~D~~rfagL~lvtk~~~~~~------~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~Lavs 79 (543)
T PF05536_consen 7 LEKCLSLLKSA-DDTERFAGLLLVTKLLDADD------EDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVS 79 (543)
T ss_pred HHHHHHHhccC-CcHHHHHHHHHHHHcCCCch------hhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHH
Confidence 35566666643 34445555566666665431 0011 1122222334443321 23345555556
Q ss_pred HHHHHHhccc--CCCCchhhHHHHHHhhcCCCh-hHHHHHHHHHHHhhhhhhhhcchh-HHHHHHHHHHhhcCCCChHHH
Q 001487 127 TVSELASNIL--PENGWPELLPFMFQCVSSDSV-KLQESAFLIFAQLSQYIGDTLTPH-LKHLHAVFLNCLTNSNNPDVK 202 (1069)
Q Consensus 127 ~i~~i~~~~~--~~~~w~~ll~~l~~~~~~~~~-~~r~~al~~l~~l~~~~~~~~~~~-~~~l~~~l~~~l~~~~~~~vr 202 (1069)
+++.+.+..- .....-.-+|.+.+.+.+.+. .....++.+|..++.+ ++..... -...++.+.+.+.+ .+..+
T Consensus 80 vL~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~-~~G~~aLl~~g~v~~L~ei~~~--~~~~~ 156 (543)
T PF05536_consen 80 VLAAFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASS-PEGAKALLESGAVPALCEIIPN--QSFQM 156 (543)
T ss_pred HHHHHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcC-cHhHHHHHhcCCHHHHHHHHHh--CcchH
Confidence 6666655210 012445668999999877666 7888899999999843 2211111 11233344444444 34667
Q ss_pred HHHHHHHHHHHHhhCCcchHhHHHhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHccccHH------HHHhHHHHHHH
Q 001487 203 IAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRF------LRRQLVDVVGS 276 (1069)
Q Consensus 203 ~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~------~~~~~~~l~~~ 276 (1069)
..|++++..++...... ........+..++..+...........+...+..+..+....+.. -..-...+...
T Consensus 157 E~Al~lL~~Lls~~~~~-~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~g 235 (543)
T PF05536_consen 157 EIALNLLLNLLSRLGQK-SWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKG 235 (543)
T ss_pred HHHHHHHHHHHHhcchh-hhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHH
Confidence 88888888887765311 111222333345555555554445566777888888888766311 11123455666
Q ss_pred HHHHhcCCCcchHHHHHHHHHHHHHHHh
Q 001487 277 MLQIAEAESLEEGTRHLAIEFVITLAEA 304 (1069)
Q Consensus 277 l~~~~~~~~~~~~~r~~a~~~l~~l~~~ 304 (1069)
+..++.++ ....-|..++.+...+.+.
T Consensus 236 l~~iL~sr-~~~~~R~~al~Laa~Ll~~ 262 (543)
T PF05536_consen 236 LRDILQSR-LTPSQRDPALNLAASLLDL 262 (543)
T ss_pred HHHHHhcC-CCHHHHHHHHHHHHHHHHH
Confidence 66666543 4567788888888777775
No 241
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=91.45 E-value=28 Score=39.02 Aligned_cols=218 Identities=13% Similarity=0.122 Sum_probs=115.1
Q ss_pred hhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhCCcchHhHHHhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHH
Q 001487 180 PHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELA 259 (1069)
Q Consensus 180 ~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~l~~l~ 259 (1069)
..+..++..++.+-+++ .+-...++.+..++.+.... +++. ..++..++..+...+.+.+-.+|..+++++..+.
T Consensus 45 ~~flr~vn~IL~~Kk~~---si~dRil~fl~~f~~Y~~~~-dpeg-~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~ 119 (885)
T COG5218 45 EEFLRVVNTILACKKNP---SIPDRILSFLKRFFEYDMPD-DPEG-EELVAGTFYHLLRGTESKDKKVRKRSLQILALLS 119 (885)
T ss_pred HHHHHHHHHhhccccCC---CcHHHHHHHHHHHHHhcCCC-Chhh-hHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHH
Confidence 34455555555544433 44556677777777754221 1221 4556667777777777888999999999998877
Q ss_pred ccccHHHHHhHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCccc
Q 001487 260 GTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLW 339 (1069)
Q Consensus 260 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~ 339 (1069)
....+.=......++..+..-+- +-+..+|..|..++..+-+-. ..-.+++..++-.+++ ....
T Consensus 120 d~v~eIDe~l~N~L~ekl~~R~~--DRE~~VR~eAv~~L~~~Qe~~-------~neen~~~n~l~~~vq---nDPS---- 183 (885)
T COG5218 120 DVVREIDEVLANGLLEKLSERLF--DREKAVRREAVKVLCYYQEME-------LNEENRIVNLLKDIVQ---NDPS---- 183 (885)
T ss_pred HhcchHHHHHHHHHHHHHHHHHh--cchHHHHHHHHHHHHHHHhcc-------CChHHHHHHHHHHHHh---cCcH----
Confidence 65544333334445554444332 335678999988877665421 1112233333333332 1110
Q ss_pred ccCCCCCccccCCcchhhHHHHHHHHHHHcCCccchHHHHHHHHHhhcCCChHHHHH-HHHHHHHHHhhcHHHHHHhHHH
Q 001487 340 HSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHA-ALIALAQIAEGCAKVMVKNLEQ 418 (1069)
Q Consensus 340 ~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~a-al~~l~~l~~~~~~~~~~~~~~ 418 (1069)
..+...++-.+. .. ....| ++.+...+.+.-.|.. --.+|-.+...+...+.+++
T Consensus 184 ---------------~EVRr~allni~--vd-nsT~p----~IlERarDv~~anRr~vY~r~Lp~iGd~~~lsi~kri-- 239 (885)
T COG5218 184 ---------------DEVRRLALLNIS--VD-NSTYP----CILERARDVSGANRRMVYERCLPRIGDLKSLSIDKRI-- 239 (885)
T ss_pred ---------------HHHHHHHHHHee--eC-CCcch----hHHHHhhhhhHHHHHHHHHHHhhhhcchhhcccccee--
Confidence 111122222221 11 23334 3334444444433433 23344444443333333332
Q ss_pred HHHHHHhhCCCCChhHHHHHHHHHHH
Q 001487 419 VLSMVLNSFRDPHPRVRWAAINAIGQ 444 (1069)
Q Consensus 419 i~~~l~~~l~d~~~~vr~~a~~~l~~ 444 (1069)
-.+-.++.|.+..|+.++..++..
T Consensus 240 --~l~ewgl~dRe~sv~~a~~d~ia~ 263 (885)
T COG5218 240 --LLMEWGLLDREFSVKGALVDAIAS 263 (885)
T ss_pred --hhhhhcchhhhhhHHHHHHHHHHH
Confidence 255678899999999998887754
No 242
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=90.95 E-value=3.6 Score=37.34 Aligned_cols=78 Identities=18% Similarity=0.277 Sum_probs=61.6
Q ss_pred HHHHHHHHhhCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhh-hhHHHHHhhccC--CCChhHHHHHHHHHHHhhhcCC
Q 001487 417 EQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHP-QVLPALAGAMDD--FQNPRVQAHAASAVLNFSENCT 493 (1069)
Q Consensus 417 ~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~-~il~~l~~~l~~--~~~~~v~~~a~~al~~l~~~~~ 493 (1069)
...+..|.+.|++++|.++..|+..|..+.+.++..+...+.. .++..+.+.+.. ..++.|+..+...+......++
T Consensus 36 k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~ 115 (133)
T cd03561 36 KEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFG 115 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 4567788888999999999999999999999998876444444 566666666654 2577899999999999988776
Q ss_pred c
Q 001487 494 P 494 (1069)
Q Consensus 494 ~ 494 (1069)
.
T Consensus 116 ~ 116 (133)
T cd03561 116 G 116 (133)
T ss_pred C
Confidence 4
No 243
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=90.89 E-value=33 Score=40.12 Aligned_cols=106 Identities=17% Similarity=0.186 Sum_probs=62.8
Q ss_pred HhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHH--HHHHHhhCCCCChhHHHHHHHHHHHhHhhhch---hHHhhhh
Q 001487 384 AYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQV--LSMVLNSFRDPHPRVRWAAINAIGQLSTDLGP---DLQNQFH 458 (1069)
Q Consensus 384 ~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~i--~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~~ 458 (1069)
.++.++++.+.-.|...+.-++.+..+ +.....++ ++.++..|..++..|+..||++|..+.-.-.. .+...+.
T Consensus 240 ~mL~~q~~~~qsnaaaylQHlcfgd~~-ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKlai~~~ 318 (717)
T KOG1048|consen 240 SMLMSQDPSVQSNAAAYLQHLCFGDNK-IKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLAIKEL 318 (717)
T ss_pred HHHhccChhhhHHHHHHHHHHHhhhHH-HHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchhhhhc
Confidence 344455555555454445555544332 22344443 67788899999999999999999988633211 1111222
Q ss_pred hhhHHHHHhhccCCCChhHHHHHHHHHHHhhhc
Q 001487 459 PQVLPALAGAMDDFQNPRVQAHAASAVLNFSEN 491 (1069)
Q Consensus 459 ~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~ 491 (1069)
+ =++.++..+....+.+|++.+...|-++.+.
T Consensus 319 ~-Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~ 350 (717)
T KOG1048|consen 319 N-GVPTLVRLLRHTQDDEVRELITGILWNLSSN 350 (717)
T ss_pred C-ChHHHHHHHHhhcchHHHHHHHHHHhcccch
Confidence 2 3455666666435677887777776666544
No 244
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.58 E-value=1 Score=42.71 Aligned_cols=93 Identities=16% Similarity=0.212 Sum_probs=72.9
Q ss_pred hhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHh---h
Q 001487 458 HPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADS---S 534 (1069)
Q Consensus 458 ~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~i~~~l~~~l~~~~~~v~~~al~~l~~l~~~---~ 534 (1069)
+..++|.++..|.+ -+..-+--|-..+..++...+ +.+.|.+++++..+...+...+.++...++.+|..++.. +
T Consensus 112 y~~yLp~F~dGL~e-~~hpyrf~A~~Gi~DLLl~~g-~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~~v 189 (262)
T KOG3961|consen 112 YCPYLPLFFDGLAE-TDHPYRFVARQGITDLLLAGG-EKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVGCV 189 (262)
T ss_pred chHHHHHHhhhhhh-cCCCcchhhhhcHHHHHHhcc-cccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccc
Confidence 44677777777776 444445556666667776666 457799999999999999999999999999999988765 4
Q ss_pred HhhhHhhHhhhhHHHHHH
Q 001487 535 QEHFQKYYDAVMPFLKAI 552 (1069)
Q Consensus 535 ~~~~~~~~~~i~~~l~~~ 552 (1069)
|..+.||+.+++|.+...
T Consensus 190 G~aLVPfYRQlLp~~n~~ 207 (262)
T KOG3961|consen 190 GAALVPFYRQLLPVLNTF 207 (262)
T ss_pred chhhhhHHHHhhhhhhhh
Confidence 678999999999987653
No 245
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=90.57 E-value=3.7 Score=37.68 Aligned_cols=78 Identities=13% Similarity=0.303 Sum_probs=62.7
Q ss_pred HHHHHHHHhhCCCCChhHHHHHHHHHHHhHhhhchhHHhhh-hhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCc
Q 001487 417 EQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQF-HPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTP 494 (1069)
Q Consensus 417 ~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~ 494 (1069)
...+..|.+.+.+.+|.+...|+..|..+.+.++..+.... ...++..+.+.+.+..++.|+..+...+....+.+..
T Consensus 36 k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~~ 114 (144)
T cd03568 36 KDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFKN 114 (144)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhCC
Confidence 45677888889999999999999999999999988763222 3467777777777645789999999999999888764
No 246
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.53 E-value=67 Score=41.85 Aligned_cols=148 Identities=16% Similarity=0.172 Sum_probs=97.3
Q ss_pred HHHHHHHccCCCHHHHHHHHHHHHhhcccCCCCcccCCCHHHHHHHHHHHHHHHhhc--chhhHHHHHHHHHHHHHhccc
Q 001487 59 LKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLE--SAKSISKKLCDTVSELASNIL 136 (1069)
Q Consensus 59 ~~L~~il~~~~~~~~R~~a~i~L~~~i~~~~~~~w~~l~~~~~~~i~~~ll~~l~~e--~~~~vr~~~~~~i~~i~~~~~ 136 (1069)
..|...+++...+.+|++.++.+++.+.. |..++....- ..+-..+.+. .++.-+..+..+++....++.
T Consensus 54 ~~l~s~~~~~~~~p~rkL~s~~i~rl~~~-----gd~f~~~~~l---~~c~d~l~d~~~~~~q~k~~a~~~l~~~y~~~g 125 (2067)
T KOG1822|consen 54 QQLISRLTNGAGPPTRKLISVAIARLISN-----GDSFSLYSRL---NSCNDFLSDGSPSDPQRKLAALSCLGSLYEHYG 125 (2067)
T ss_pred HHHHHHHccCCCchhHHHHHHHHHHHHhc-----cchhhHHHHH---HHhhhhhhcCCCccHHHHHhhccchHHHHHHhh
Confidence 45667777788899999999999999986 6655443222 1223333332 233334455567777777655
Q ss_pred CC--CCchhhHHHHHHhhcCCChhHHHHHHHHHHHhhhhhhh--hcchhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHH
Q 001487 137 PE--NGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGD--TLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINF 212 (1069)
Q Consensus 137 ~~--~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~--~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l 212 (1069)
+. ....+.+..+..+.+......|...+..+...++..+. ........+.-.....+.+. +-.||.++.+|+..+
T Consensus 126 ~~~~~~~edt~~if~~~~k~n~s~~~~~i~~~l~~~~~~~g~~s~~~~~~k~i~l~~k~~lld~-s~~v~iaa~rc~~a~ 204 (2067)
T KOG1822|consen 126 RMIGRGLEDTVQIFTKLVKTNESFVRQEIMITLHNALKGMGGTSAATATHKAIRLIAKNSLLDR-SFNVKIAAARCLKAF 204 (2067)
T ss_pred HhhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhhhhhhh-hHHHHHHhHHHHHHH
Confidence 42 23567788888888777777888888888888877662 22233444444555555665 677999999998877
Q ss_pred HHh
Q 001487 213 IQC 215 (1069)
Q Consensus 213 ~~~ 215 (1069)
...
T Consensus 205 s~~ 207 (2067)
T KOG1822|consen 205 SNL 207 (2067)
T ss_pred Hhh
Confidence 654
No 247
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=90.43 E-value=7.5 Score=46.71 Aligned_cols=120 Identities=16% Similarity=0.235 Sum_probs=71.4
Q ss_pred CChHHHHHHHHHHHHHHhhcHH--------------HHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhHhhhchhHH
Q 001487 389 PEWQKHHAALIALAQIAEGCAK--------------VMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQ 454 (1069)
Q Consensus 389 ~~~~~r~aal~~l~~l~~~~~~--------------~~~~~~~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~ 454 (1069)
.+...|.+|+.+++.++...-. ....+.+.+...+.......+..-+..++.+||.+..
T Consensus 447 ~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~------- 519 (618)
T PF01347_consen 447 NSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH------- 519 (618)
T ss_dssp T-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT--------
T ss_pred CChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC-------
Confidence 4678999999999998864221 1112334444444445556677778888999988642
Q ss_pred hhhhhhhHHHHHhhccCC--CChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcC--ChhHHHHHHHHH
Q 001487 455 NQFHPQVLPALAGAMDDF--QNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNG--KQMVQEGALTAL 527 (1069)
Q Consensus 455 ~~~~~~il~~l~~~l~~~--~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~i~~~l~~~l~~~--~~~v~~~al~~l 527 (1069)
+..++.+...+.+. ....+|..|++||..+...++ ..+.+.+++.+.+. +.++|-.|+..+
T Consensus 520 ----~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~--------~~v~~~l~~I~~n~~e~~EvRiaA~~~l 584 (618)
T PF01347_consen 520 ----PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCP--------EKVREILLPIFMNTTEDPEVRIAAYLIL 584 (618)
T ss_dssp ----GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-H--------HHHHHHHHHHHH-TTS-HHHHHHHHHHH
T ss_pred ----chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCc--------HHHHHHHHHHhcCCCCChhHHHHHHHHH
Confidence 34556666666551 357899999999876644332 24455666666554 466876665443
No 248
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=90.02 E-value=45 Score=39.08 Aligned_cols=116 Identities=16% Similarity=0.267 Sum_probs=75.7
Q ss_pred chh-hHHHHHHhhcCCChhHHHHHHHHHHHhhhhhhhhcchhHHHH--HHHHHHhhcCCCChHHHHHHHHHHHHHHHhhC
Q 001487 141 WPE-LLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHL--HAVFLNCLTNSNNPDVKIAALNAVINFIQCLT 217 (1069)
Q Consensus 141 w~~-ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l--~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~ 217 (1069)
|.+ =+|..++++.+.++..+..|-.-+..+|-.... .+..+.++ ++.++..+.+. ..+|+..|+.+|.+++..-.
T Consensus 230 w~d~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~-ik~~vrqlggI~kLv~Ll~~~-~~evq~~acgaLRNLvf~~~ 307 (717)
T KOG1048|consen 230 WRDPTLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNK-IKSRVRQLGGIPKLVALLDHR-NDEVQRQACGALRNLVFGKS 307 (717)
T ss_pred ccccccHHHHHHHhccChhhhHHHHHHHHHHHhhhHH-HHHHHHHhccHHHHHHHhcCC-cHHHHHHHHHHHHhhhcccC
Confidence 543 367788888888888888888888888755332 22233333 45667778887 99999999999999986543
Q ss_pred CcchHhHH--HhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHcc
Q 001487 218 SSADRDRF--QDLLPLMMRTLTESLNNGNEATAQEALELLIELAGT 261 (1069)
Q Consensus 218 ~~~~~~~~--~~~~~~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~~ 261 (1069)
.....-.+ ..=+|.+++.+.+ ..|.++++.+-..|..+...
T Consensus 308 ~~~NKlai~~~~Gv~~l~~~Lr~---t~D~ev~e~iTg~LWNLSS~ 350 (717)
T KOG1048|consen 308 TDSNKLAIKELNGVPTLVRLLRH---TQDDEVRELITGILWNLSSN 350 (717)
T ss_pred CcccchhhhhcCChHHHHHHHHh---hcchHHHHHHHHHHhcccch
Confidence 21111111 1235666666664 34778888777777766554
No 249
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=89.95 E-value=23 Score=42.04 Aligned_cols=134 Identities=15% Similarity=0.141 Sum_probs=75.9
Q ss_pred HHHHHHHHhhcC----CChHHHHHHHHHHHHHHh-hcHH-------HHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHH
Q 001487 377 VASEQLPAYLAA----PEWQKHHAALIALAQIAE-GCAK-------VMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQ 444 (1069)
Q Consensus 377 ~l~~~l~~~l~~----~~~~~r~aal~~l~~l~~-~~~~-------~~~~~~~~i~~~l~~~l~d~~~~vr~~a~~~l~~ 444 (1069)
.++..+.+++.+ +++..|..++.+++.++. .|.+ ....+++.+...+-.+..+.+...+..++.+||.
T Consensus 393 ~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN 472 (574)
T smart00638 393 EILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGN 472 (574)
T ss_pred HHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhc
Confidence 344444444443 467899999999999886 3321 1123333344444444455566667788889888
Q ss_pred hHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhc--CChhHHHH
Q 001487 445 LSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQN--GKQMVQEG 522 (1069)
Q Consensus 445 l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~i~~~l~~~l~~--~~~~v~~~ 522 (1069)
+... ..+..+.+.+. .-.. ....+|..|+++|..+....+.. +.+.+++.+.+ .+.++|-.
T Consensus 473 ~g~~-------~~i~~l~~~l~-~~~~-~~~~iR~~Av~Alr~~a~~~p~~--------v~~~l~~i~~n~~e~~EvRia 535 (574)
T smart00638 473 AGHP-------SSIKVLEPYLE-GAEP-LSTFIRLAAILALRNLAKRDPRK--------VQEVLLPIYLNRAEPPEVRMA 535 (574)
T ss_pred cCCh-------hHHHHHHHhcC-CCCC-CCHHHHHHHHHHHHHHHHhCchH--------HHHHHHHHHcCCCCChHHHHH
Confidence 6531 11222233222 1122 46789999999999887655432 23344444443 35678866
Q ss_pred HHHHH
Q 001487 523 ALTAL 527 (1069)
Q Consensus 523 al~~l 527 (1069)
|+..+
T Consensus 536 A~~~l 540 (574)
T smart00638 536 AVLVL 540 (574)
T ss_pred HHHHH
Confidence 65443
No 250
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=89.81 E-value=34 Score=37.48 Aligned_cols=150 Identities=15% Similarity=0.166 Sum_probs=93.9
Q ss_pred CCchhhHHHHHHhhcCCChhHHHHHHHHHHHhhhhhhhh--c-chhHHHHHHHHHHhhcCC-CChHHHHHHHHHHHHHHH
Q 001487 139 NGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDT--L-TPHLKHLHAVFLNCLTNS-NNPDVKIAALNAVINFIQ 214 (1069)
Q Consensus 139 ~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~--~-~~~~~~l~~~l~~~l~~~-~~~~vr~~a~~~l~~l~~ 214 (1069)
-.|..+.+.++..+-+++..+|.+|+++++.++.....- + .-+++. .+...|..+ ....-|..|++.+..++.
T Consensus 21 ~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~---~ii~SL~~~~~~~~ER~QALkliR~~l~ 97 (371)
T PF14664_consen 21 LVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDI---FIIRSLDRDNKNDVEREQALKLIRAFLE 97 (371)
T ss_pred hhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCch---hhHhhhcccCCChHHHHHHHHHHHHHHH
Confidence 368888888887666666999999999999888754221 1 112222 233344433 244568899999999988
Q ss_pred hhCCcchHhHHHhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHccccHHHHH--hHHHHHHHHHHHhcCCCcchHHHH
Q 001487 215 CLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRR--QLVDVVGSMLQIAEAESLEEGTRH 292 (1069)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~l~~~l~~~~~~~~~~~~~r~ 292 (1069)
.-.+ .+ .+=..+++.+..+.++.+...|..|++.+.+++-..|+.+.. -+..++..+.. + .-++..
T Consensus 98 ~~~~---~~---~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d----~--~~~~~~ 165 (371)
T PF14664_consen 98 IKKG---PK---EIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALID----G--SFSISE 165 (371)
T ss_pred hcCC---cc---cCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHh----c--cHhHHH
Confidence 6321 11 111256777777777788889999999999999887776532 23334443332 1 112444
Q ss_pred HHHHHHHHHHH
Q 001487 293 LAIEFVITLAE 303 (1069)
Q Consensus 293 ~a~~~l~~l~~ 303 (1069)
..+..+..+.+
T Consensus 166 ~l~~~lL~lLd 176 (371)
T PF14664_consen 166 SLLDTLLYLLD 176 (371)
T ss_pred HHHHHHHHHhC
Confidence 55555555555
No 251
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=89.67 E-value=6.3 Score=36.13 Aligned_cols=79 Identities=9% Similarity=0.188 Sum_probs=61.7
Q ss_pred HHHHHHHHhhCCCCChhHHHHHHHHHHHhHhhhchhHHhhh-hhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcc
Q 001487 417 EQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQF-HPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPE 495 (1069)
Q Consensus 417 ~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~ 495 (1069)
...+..+.+.+.+++|.+...|+..|..+.+.++..+...+ ...++..+.+.+.+..++.|+..+...+......++.+
T Consensus 40 k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~ 119 (142)
T cd03569 40 KYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFRNK 119 (142)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhCCC
Confidence 45677888889999999999999999999999887663332 34566666666654368899999999999998887643
No 252
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.60 E-value=79 Score=41.27 Aligned_cols=192 Identities=13% Similarity=0.076 Sum_probs=119.2
Q ss_pred HHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCC---ChhHHHHHHHHHHHhhhhhhhhcchhH
Q 001487 106 SMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSD---SVKLQESAFLIFAQLSQYIGDTLTPHL 182 (1069)
Q Consensus 106 ~~ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~~~~w~~ll~~l~~~~~~~---~~~~r~~al~~l~~l~~~~~~~~~~~~ 182 (1069)
..+...+..-..+.+|+.++.+++++.+. +..-....++..+...+++. ++..+.+++.+++..-+.++.....-.
T Consensus 54 ~~l~s~~~~~~~~p~rkL~s~~i~rl~~~-gd~f~~~~~l~~c~d~l~d~~~~~~q~k~~a~~~l~~~y~~~g~~~~~~~ 132 (2067)
T KOG1822|consen 54 QQLISRLTNGAGPPTRKLISVAIARLISN-GDSFSLYSRLNSCNDFLSDGSPSDPQRKLAALSCLGSLYEHYGRMIGRGL 132 (2067)
T ss_pred HHHHHHHccCCCchhHHHHHHHHHHHHhc-cchhhHHHHHHHhhhhhhcCCCccHHHHHhhccchHHHHHHhhHhhcchH
Confidence 34555555556788999999999998874 22111123344444444433 345667788899999999888777667
Q ss_pred HHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhCCcchHhHHHhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHccc
Q 001487 183 KHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTE 262 (1069)
Q Consensus 183 ~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~~~ 262 (1069)
...++++.+..+.. ..-+|......+............. ......+.......+.+....++..+.+|+..+....
T Consensus 133 edt~~if~~~~k~n-~s~~~~~i~~~l~~~~~~~g~~s~~---~~~~k~i~l~~k~~lld~s~~v~iaa~rc~~a~s~~~ 208 (2067)
T KOG1822|consen 133 EDTVQIFTKLVKTN-ESFVRQEIMITLHNALKGMGGTSAA---TATHKAIRLIAKNSLLDRSFNVKIAAARCLKAFSNLG 208 (2067)
T ss_pred HHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHhccchHH---HHHHHHHHHHHhhhhhhhhHHHHHHhHHHHHHHHhhc
Confidence 88888888888876 6777888777777777665421111 1112234444444555556678888899988777655
Q ss_pred cHHH-HHhHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHh
Q 001487 263 PRFL-RRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEA 304 (1069)
Q Consensus 263 ~~~~-~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~ 304 (1069)
+..+ ..-+.....++++.. ...+..+|..-.+++.++...
T Consensus 209 ~~~~~~Sele~~~s~cfk~~--~~s~~~~r~a~a~~~~~Lla~ 249 (2067)
T KOG1822|consen 209 GPGLGTSELETLASYCFKGI--EISNSEVRCAVAEFLGSLLAL 249 (2067)
T ss_pred Cccccchhhhhhcceeeeee--ccchHHHHHHHHHHHHHHHhc
Confidence 4433 333444445555433 233556776666777776653
No 253
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=88.97 E-value=0.81 Score=31.26 Aligned_cols=29 Identities=24% Similarity=0.416 Sum_probs=26.4
Q ss_pred HHHHHHHhhCCCCChhHHHHHHHHHHHhH
Q 001487 418 QVLSMVLNSFRDPHPRVRWAAINAIGQLS 446 (1069)
Q Consensus 418 ~i~~~l~~~l~d~~~~vr~~a~~~l~~l~ 446 (1069)
..+|.++..|+++++.+|..|+|+|+.++
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 36889999999999999999999999886
No 254
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=88.83 E-value=17 Score=39.04 Aligned_cols=151 Identities=15% Similarity=0.155 Sum_probs=76.6
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHhhcCC---CChHHHHHHHHHHHHHHHhhCCcch
Q 001487 145 LPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNS---NNPDVKIAALNAVINFIQCLTSSAD 221 (1069)
Q Consensus 145 l~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~---~~~~vr~~a~~~l~~l~~~~~~~~~ 221 (1069)
+..++..+.++|...+..|+.++..+....+.........+++.+.+.+.+. .+..++..++.++..+...- ..
T Consensus 107 ~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~---~~ 183 (312)
T PF03224_consen 107 YSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSK---EY 183 (312)
T ss_dssp HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSH---HH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcc---hh
Confidence 3344447778899999999999999987755443222234445444444432 15567788899999887542 12
Q ss_pred HhHHHhhHHHHHHHHHHHH-----hCC--ChHHHHHHHHHHHHHHccccHHHHHhH--HHHHHHHHHHhcCCCcchHHHH
Q 001487 222 RDRFQDLLPLMMRTLTESL-----NNG--NEATAQEALELLIELAGTEPRFLRRQL--VDVVGSMLQIAEAESLEEGTRH 292 (1069)
Q Consensus 222 ~~~~~~~~~~~l~~l~~~l-----~~~--~~~~~~~~~~~l~~l~~~~~~~~~~~~--~~l~~~l~~~~~~~~~~~~~r~ 292 (1069)
+..|.. ...++.+...+ .+. +......++-|+.-+. +.+.....+ ..+++.+..++... ..+++.+
T Consensus 184 R~~f~~--~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLS--F~~~~~~~~~~~~~i~~L~~i~~~~-~KEKvvR 258 (312)
T PF03224_consen 184 RQVFWK--SNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLS--FEPEIAEELNKKYLIPLLADILKDS-IKEKVVR 258 (312)
T ss_dssp HHHHHT--HHHHHHHHHHHH---------HHHHHHHHHHHHHHHT--TSHHHHHHHHTTSHHHHHHHHHHH---SHHHHH
T ss_pred HHHHHh--cCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHh--cCHHHHHHHhccchHHHHHHHHHhc-ccchHHH
Confidence 233322 23333343333 111 2334444444444332 222222111 12677777666543 3566767
Q ss_pred HHHHHHHHHHH
Q 001487 293 LAIEFVITLAE 303 (1069)
Q Consensus 293 ~a~~~l~~l~~ 303 (1069)
.++.++..+++
T Consensus 259 v~la~l~Nl~~ 269 (312)
T PF03224_consen 259 VSLAILRNLLS 269 (312)
T ss_dssp HHHHHHHHTTS
T ss_pred HHHHHHHHHHh
Confidence 77888888877
No 255
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=88.81 E-value=53 Score=38.18 Aligned_cols=109 Identities=16% Similarity=0.055 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhchhhhHHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHHhHhhhhhhhhhHhHHHHHHhhcc
Q 001487 854 EEVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACN 933 (1069)
Q Consensus 854 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~l~~~ll~~l~ 933 (1069)
.+++.++.-.+|=++-..++. +|.++.+|..+.++-+|..+.-++|-.+...|... -+..+-....
T Consensus 569 DDVrRaAVialGFVl~~dp~~--------~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~e------Ai~lLepl~~ 634 (929)
T KOG2062|consen 569 DDVRRAAVIALGFVLFRDPEQ--------LPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKE------AINLLEPLTS 634 (929)
T ss_pred hHHHHHHHHHheeeEecChhh--------chHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHH------HHHHHhhhhc
Confidence 356666666666444433333 34455556567788899998889998888877642 2333333346
Q ss_pred CCChhHHHhhhHHHHHHHhhcCCCchHHHHHHHHHHHHhhcCC
Q 001487 934 DENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHP 976 (1069)
Q Consensus 934 ~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~~l~~L~~~l~~~ 976 (1069)
|+...||+.|.-+++-+..-..+..-|-+..+-+.+.+++...
T Consensus 635 D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~kvI~dK 677 (929)
T KOG2062|consen 635 DPVDFVRQGALIALAMIMIQQTEQLCPKVNGFRKQLEKVINDK 677 (929)
T ss_pred ChHHHHHHHHHHHHHHHHHhcccccCchHHHHHHHHHHHhhhh
Confidence 8889999999999999887777777788888888888887654
No 256
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=88.70 E-value=30 Score=35.17 Aligned_cols=182 Identities=16% Similarity=0.106 Sum_probs=99.1
Q ss_pred HHHHHHHHccCCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCCCChHhhhHhhh
Q 001487 769 IPALVEALHKEPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIKE 848 (1069)
Q Consensus 769 ~~~l~~~~~~~~~~~v~~~~l~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~e~~d~~~~~~~~~ 848 (1069)
+|.|+....+..+++.....++++.++...- + .....+++.+..+....
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~----~-~~~~~v~~~L~~L~~~~-------------------------- 50 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHK----N-VCVPPVLQTLVSLVEQG-------------------------- 50 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccC----c-cchhHHHHHHHHHHcCC--------------------------
Confidence 3445555666677777777777766553321 1 22333444443332210
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhhchhhhHHHHHhh-hhhhh---c-CCCCHHHHHHHHHHHHHHHhHhhhhhhhhhHh
Q 001487 849 ENEQEEEVFDQVGEILGTLIKTFKAAFLPFFDELSSY-LTPMW---G-KDKTAEERRIAICIFDDVAEQCREAALKYYET 923 (1069)
Q Consensus 849 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~-l~~~l---~-~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~ 923 (1069)
.......+..++..+.+..+..| |++..++.. ..... . ++............+.+++...++ +-.+
T Consensus 51 ----~~~~~~~~~rLl~~lw~~~~r~f-~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ 121 (234)
T PF12530_consen 51 ----SLELRYVALRLLTLLWKANDRHF-PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVD 121 (234)
T ss_pred ----chhHHHHHHHHHHHHHHhCchHH-HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHH
Confidence 01122334556666666555444 555553322 22211 1 111222222234577888877666 4567
Q ss_pred HHHHHHhhc-cCCChhHHHhhhHHHHHHHhhcCCCchHHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHHHHHhhcC
Q 001487 924 YLPFLLEAC-NDENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQFHR 1002 (1069)
Q Consensus 924 l~~~ll~~l-~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~~~ 1002 (1069)
+++.+...+ ++.++.++..|..++..++....-.+.+.+.-+.+.+ ..+ .|--+..++++++...|
T Consensus 122 ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vvd~~s~w~vl~~~l----~~~---------~rp~v~~~l~~l~~l~~ 188 (234)
T PF12530_consen 122 LLPLLSGCLNQSCDEVAQALALEALAPLCEAEVVDFYSAWKVLQKKL----SLD---------YRPLVLKSLCSLFALVP 188 (234)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhc----CCc---------cchHHHHHHHHHHHHhc
Confidence 788888888 7888999999999999999765555555554444333 222 23335566667766666
Q ss_pred C
Q 001487 1003 D 1003 (1069)
Q Consensus 1003 ~ 1003 (1069)
.
T Consensus 189 ~ 189 (234)
T PF12530_consen 189 Q 189 (234)
T ss_pred c
Confidence 4
No 257
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=88.68 E-value=0.78 Score=31.33 Aligned_cols=29 Identities=24% Similarity=0.401 Sum_probs=26.6
Q ss_pred hHHHHHHhhccCCChhHHHhhhHHHHHHH
Q 001487 923 TYLPFLLEACNDENQDVRQAAVYGLGVCA 951 (1069)
Q Consensus 923 ~l~~~ll~~l~~~~~~vr~~a~~~lg~l~ 951 (1069)
..+|.+++.++++++.++..|+++|+.++
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 46899999999999999999999999986
No 258
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=88.44 E-value=4.2 Score=40.79 Aligned_cols=135 Identities=9% Similarity=0.090 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHhhhchhhhHHH-----HHhhhhhhhcCCCCHHHHHHHHHHHHHHHhHhhhhhhhhh--HhHHHHHHhhc
Q 001487 860 VGEILGTLIKTFKAAFLPFFDE-----LSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYY--ETYLPFLLEAC 932 (1069)
Q Consensus 860 ~~~~l~~l~~~~~~~~~~~~~~-----l~~~l~~~l~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~--~~l~~~ll~~l 932 (1069)
+..++.+++. +++.-.++++. ++|++...-+..+-...|-++++++|++++.-...+..|+ .+++|..+..+
T Consensus 70 aLaLlQ~vAs-hpetr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~m 148 (262)
T PF04078_consen 70 ALALLQCVAS-HPETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIM 148 (262)
T ss_dssp HHHHHHHHHH--TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHH
T ss_pred HHHHHHHHHc-ChHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHH
Confidence 4455556665 45444455554 3444422211111245688899999999997766666654 69999999999
Q ss_pred cCCChhHHHhhhHHHHHHHhhcCC-----CchH---HHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHHHHHhh
Q 001487 933 NDENQDVRQAAVYGLGVCAEFGGS-----VVKP---LVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQF 1000 (1069)
Q Consensus 933 ~~~~~~vr~~a~~~lg~l~~~~~~-----~~~~---~~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~ 1000 (1069)
+..+..-+..|.+.+..+...... .-.. .+..++..+...+.... ...+-+.+++|--|+..+
T Consensus 149 e~GselSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~p-----S~RLLKhIIrCYlRLsdn 219 (262)
T PF04078_consen 149 EFGSELSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQP-----SPRLLKHIIRCYLRLSDN 219 (262)
T ss_dssp HHS-HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS-------HHHHHHHHHHHHHHTTS
T ss_pred HhccHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCC-----ChhHHHHHHHHHHHHccC
Confidence 989999999999988887664421 0111 23334444444333221 457888899998888654
No 259
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=88.33 E-value=14 Score=35.88 Aligned_cols=65 Identities=25% Similarity=0.357 Sum_probs=57.1
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhhhc---CchHHHHHHHHHHccCCCHHHHHHHHHHHHhhcccC
Q 001487 23 PFETLISHLMSTSNEQRSEAELLFNLCKQQ---DPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRD 88 (1069)
Q Consensus 23 ~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~---~p~~~~~~L~~il~~~~~~~~R~~a~i~L~~~i~~~ 88 (1069)
-+..+|+...+++...|..|-+.+....++ +|..+++++..+.+ ++++.+|..|..+++..-.++
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~cvp~lIAL~t-s~~~~ir~~A~~~l~~l~eK~ 76 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQCVPTLIALET-SPNPSIRSRAYQLLKELHEKH 76 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHHHHhHhhhhhC-CCChHHHHHHHHHHHHHHHHh
Confidence 567789999999999999999999887665 89888898888655 589999999999999998885
No 260
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=88.26 E-value=5.8 Score=36.42 Aligned_cols=76 Identities=17% Similarity=0.189 Sum_probs=61.7
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHH--HHHHHHHhhCCC-CChhHHHHHHHHHHHhHhhhch
Q 001487 376 PVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLE--QVLSMVLNSFRD-PHPRVRWAAINAIGQLSTDLGP 451 (1069)
Q Consensus 376 ~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~--~i~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~ 451 (1069)
...+..|...+++.++++..-|+..|..++.+|+..+...+. .++..+...+.+ .++.|+..++..+...+..++.
T Consensus 36 k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~~ 114 (144)
T cd03568 36 KDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFKN 114 (144)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhCC
Confidence 356777788888999999999999999999999986655443 466667777766 7899999999999998887764
No 261
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=87.50 E-value=3.3 Score=38.50 Aligned_cols=128 Identities=18% Similarity=0.235 Sum_probs=81.8
Q ss_pred hhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCc---------------cc
Q 001487 432 PRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTP---------------EI 496 (1069)
Q Consensus 432 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~---------------~~ 496 (1069)
+.||...+.++..++....| ...+.+++.+++.++. ++.........|..+.+.... +.
T Consensus 2 ~~i~~kl~~~l~~i~~~~~P----~~Wp~~l~~l~~~~~~--~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~ 75 (148)
T PF08389_consen 2 PFIRNKLAQVLAEIAKRDWP----QQWPDFLEDLLQLLQS--SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDA 75 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHTT----TTSTTHHHHHHHHHHT--THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHCh----hhCchHHHHHHHHhcc--chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHH
Confidence 35777888888888876543 3467788888888776 455556666677666654321 11
Q ss_pred ccCchHHHHHHHHHHhhcCC----hhHHHHHHHHHHHHHHhhHhhhHhhHhhhhHHHHHHHhhccCccccchhhHHHHHH
Q 001487 497 LTPYLDGIVSKLLVLLQNGK----QMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECI 572 (1069)
Q Consensus 497 ~~~~l~~i~~~l~~~l~~~~----~~v~~~al~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l 572 (1069)
+....+.+++.+.++++... ..+...++.++++.+...+.....- ..+++.+.+.+..+ .++..|.+|+
T Consensus 76 l~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~-~~~l~~~~~~l~~~------~~~~~A~~cl 148 (148)
T PF08389_consen 76 LRSNSPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIIN-SNLLNLIFQLLQSP------ELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHS-SSHHHHHHHHTTSC------CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhcc-HHHHHHHHHHcCCH------HHHHHHHHhC
Confidence 23345666666666666544 6788899999999887555332111 34777777776332 2577788775
No 262
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=87.30 E-value=2.5 Score=36.72 Aligned_cols=70 Identities=16% Similarity=0.212 Sum_probs=48.9
Q ss_pred HHHHHHHhhC-CCCChhHHHHHHHHHHHhHhhhchhHHhhhh--hhhHHHHHhhccCCCChhHHHHHHHHHHHhhh
Q 001487 418 QVLSMVLNSF-RDPHPRVRWAAINAIGQLSTDLGPDLQNQFH--PQVLPALAGAMDDFQNPRVQAHAASAVLNFSE 490 (1069)
Q Consensus 418 ~i~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~--~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~ 490 (1069)
.++..|...| .+.++.+...||.-||.+++..+..- ..+ -..=..+++.+.+ ++++||..|..++..+..
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr--~ii~~lg~K~~vM~Lm~h-~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGR--NIIEKLGAKERVMELMNH-EDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGH--HHHHHHSHHHHHHHHTS--SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHH--HHHHhcChHHHHHHHhcC-CCHHHHHHHHHHHHHHHH
Confidence 3555555566 34477888889999999999875432 222 2344567778888 999999999999988764
No 263
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=86.94 E-value=7.2 Score=35.77 Aligned_cols=79 Identities=13% Similarity=0.270 Sum_probs=60.3
Q ss_pred HHHHHHHHHhhCCCCChhHHHHHHHHHHHhHhhhchhHHhhh-hhhhHHHHHhhccCCCChh---HHHHHHHHHHHhhhc
Q 001487 416 LEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQF-HPQVLPALAGAMDDFQNPR---VQAHAASAVLNFSEN 491 (1069)
Q Consensus 416 ~~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~~il~~l~~~l~~~~~~~---v~~~a~~al~~l~~~ 491 (1069)
-...+..|.+.|.+.+|.++..|+..+..+.+.+++.+...+ -..++..+.+.+.+.+... |+..+...+......
T Consensus 40 ~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~ 119 (140)
T PF00790_consen 40 AKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEA 119 (140)
T ss_dssp HHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHH
Confidence 346778888899999999999999999999999987774332 3356666666665423333 899999999999888
Q ss_pred CCc
Q 001487 492 CTP 494 (1069)
Q Consensus 492 ~~~ 494 (1069)
+..
T Consensus 120 f~~ 122 (140)
T PF00790_consen 120 FKS 122 (140)
T ss_dssp TTT
T ss_pred HCC
Confidence 854
No 264
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=86.88 E-value=51 Score=35.86 Aligned_cols=221 Identities=13% Similarity=0.089 Sum_probs=117.0
Q ss_pred HHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCCChhHHHHHHHHHHHhhh----h-h
Q 001487 100 TQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQ----Y-I 174 (1069)
Q Consensus 100 ~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~----~-~ 174 (1069)
.-..+-+.+...+..|.+.........+++.-.... ....=++++..+...+++..+.+|..-+..++.++. . .
T Consensus 19 ~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~-~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~ 97 (339)
T PF12074_consen 19 LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFL-SSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDS 97 (339)
T ss_pred hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh-CcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchH
Confidence 445667777888888888777777777777666544 223346788999999999888899999999998875 1 1
Q ss_pred hhhcchhHHHHHHHHHHhhcCCCChHHHHH---HHHHHHHHHH-hhCCcchHh-HHHhh----HHHHH--HHHHHHHhCC
Q 001487 175 GDTLTPHLKHLHAVFLNCLTNSNNPDVKIA---ALNAVINFIQ-CLTSSADRD-RFQDL----LPLMM--RTLTESLNNG 243 (1069)
Q Consensus 175 ~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~---a~~~l~~l~~-~~~~~~~~~-~~~~~----~~~~l--~~l~~~l~~~ 243 (1069)
.....+..+.++..+.+...++ .+..... +.-++..... ..+...... ....+ =|.++ ..+...+ .
T Consensus 98 ~~~~~~~~~~L~~~~~~~~~~p-~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl--~ 174 (339)
T PF12074_consen 98 LKFAEPFLPKLLQSLKEASANP-LQSAQNGELVGAYVLLALSSWKLDKIDSKNISFWSLALDPKPSFLLSEKVYSKL--A 174 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHhCC-CCccccccHHHHHHHHHhccccchhhhhhhhhhhhhccCCCcchhcCHHHHhcc--C
Confidence 1222334555555555555665 2222211 1111111000 000000000 00000 00110 1111111 2
Q ss_pred ChHHHHHHHHHHHHHHccccHHHHHhH-HHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHH
Q 001487 244 NEATAQEALELLIELAGTEPRFLRRQL-VDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRL 322 (1069)
Q Consensus 244 ~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l 322 (1069)
+++.....++++..+.........+.. ..+...++.++..+.....+|..|.+.+..+.. ..|+. +...+
T Consensus 175 ~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~---~~~~~------l~~~l 245 (339)
T PF12074_consen 175 SEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYA---SNPEL------LSKSL 245 (339)
T ss_pred CHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH---hChHH------HHHHH
Confidence 445566667777666655544333222 233333333333333467899999999998877 23321 44556
Q ss_pred HHHHHHhhcCC
Q 001487 323 FAILMSMLLDI 333 (1069)
Q Consensus 323 ~~~l~~~l~~~ 333 (1069)
+..+..++...
T Consensus 246 i~~l~~~l~~~ 256 (339)
T PF12074_consen 246 ISGLWKWLSSS 256 (339)
T ss_pred HHHHHHHHHhc
Confidence 66666666543
No 265
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=86.74 E-value=5.6 Score=33.98 Aligned_cols=62 Identities=10% Similarity=0.152 Sum_probs=54.0
Q ss_pred HHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccC
Q 001487 410 KVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDD 471 (1069)
Q Consensus 410 ~~~~~~~~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~ 471 (1069)
+.+.++++.++..+..++.+-.+.||..+...|.-+.+.+++.....+...+++..+..+.-
T Consensus 3 ~~l~p~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~~ 64 (102)
T PF12333_consen 3 ELLSPFFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLGW 64 (102)
T ss_pred HHHHhHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHCC
Confidence 45678899999999999999999999999999999999999883367888888888887765
No 266
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=86.57 E-value=15 Score=33.26 Aligned_cols=80 Identities=18% Similarity=0.083 Sum_probs=61.5
Q ss_pred chHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhHhhhHhhH--hhhhHHHHHHHhhccCccccchhhHHHHHHHHHHH
Q 001487 500 YLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYY--DAVMPFLKAILVNATDKSNRMLRAKSMECISLVGM 577 (1069)
Q Consensus 500 ~l~~i~~~l~~~l~~~~~~v~~~al~~l~~l~~~~~~~~~~~~--~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~l~~ 577 (1069)
.-...+..+.+-+.++++.+.-.|+..+..++..+|..|...+ ..++..|..++..... ...+|.++++.+...+.
T Consensus 34 ~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~--~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 34 GPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYP--LPLVKKRILELIQEWAD 111 (133)
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCC--cHHHHHHHHHHHHHHHH
Confidence 3456778888899999999999999999999999999886544 3467777776655322 12288999999999888
Q ss_pred hhCh
Q 001487 578 AVGK 581 (1069)
Q Consensus 578 ~~~~ 581 (1069)
+++.
T Consensus 112 ~f~~ 115 (133)
T smart00288 112 AFKN 115 (133)
T ss_pred HHcC
Confidence 7753
No 267
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=86.37 E-value=58 Score=39.10 Aligned_cols=96 Identities=18% Similarity=0.197 Sum_probs=55.9
Q ss_pred hHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhCCcchHhHHHhhHHHHHHHHHHHHhCC---ChHHHHHHHHHHHH
Q 001487 181 HLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNG---NEATAQEALELLIE 257 (1069)
Q Consensus 181 ~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~---~~~~~~~~~~~l~~ 257 (1069)
+.+.+.+.+....... +...+..++++|+++-.. ..++.+ ...+.+. ...+|..|+++|..
T Consensus 487 ~~~~l~~~l~~~~~~~-~~~~~~~~LkaLgN~g~~-----------~~i~~l----~~~i~~~~~~~~~~R~~Ai~Alr~ 550 (618)
T PF01347_consen 487 YVPYLEQELKEAVSRG-DEEEKIVYLKALGNLGHP-----------ESIPVL----LPYIEGKEEVPHFIRVAAIQALRR 550 (618)
T ss_dssp GTHHHHHHHHHHHHTT--HHHHHHHHHHHHHHT-G-----------GGHHHH----HTTSTTSS-S-HHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHhhcc-CHHHHHHHHHHhhccCCc-----------hhhHHH----HhHhhhccccchHHHHHHHHHHHH
Confidence 4444555555555555 778888999999876431 112222 2222222 56788899999988
Q ss_pred HHccccHHHHHhHHHHHHHHHHHhcCCCcchHHHHHHHHHHH
Q 001487 258 LAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVI 299 (1069)
Q Consensus 258 l~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~ 299 (1069)
++..++....+ .++.+..+...+.++|..|+..+.
T Consensus 551 ~~~~~~~~v~~-------~l~~I~~n~~e~~EvRiaA~~~lm 585 (618)
T PF01347_consen 551 LAKHCPEKVRE-------ILLPIFMNTTEDPEVRIAAYLILM 585 (618)
T ss_dssp GGGT-HHHHHH-------HHHHHHH-TTS-HHHHHHHHHHHH
T ss_pred HhhcCcHHHHH-------HHHHHhcCCCCChhHHHHHHHHHH
Confidence 77766655444 334444555567889999976554
No 268
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=86.29 E-value=8.3 Score=34.95 Aligned_cols=78 Identities=9% Similarity=0.195 Sum_probs=60.6
Q ss_pred HHHHHHHHhhCCCCChhHHHHHHHHHHHhHhhhchhHHhhh-hhhhHHHHHhhccCCCChh-HHHHHHHHHHHhhhcCCc
Q 001487 417 EQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQF-HPQVLPALAGAMDDFQNPR-VQAHAASAVLNFSENCTP 494 (1069)
Q Consensus 417 ~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~~il~~l~~~l~~~~~~~-v~~~a~~al~~l~~~~~~ 494 (1069)
...+..+.+.|++++|.+...|+..+..+.+.++..+...+ ...++..+.+.+.+..... |+..+...+......+..
T Consensus 36 k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~~ 115 (133)
T smart00288 36 KDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAFKN 115 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHcC
Confidence 34667788889999999999999999999999988774333 3457777777777633434 999999999998887753
No 269
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=86.14 E-value=22 Score=35.20 Aligned_cols=113 Identities=8% Similarity=0.103 Sum_probs=77.3
Q ss_pred HHhhhhhhhcCCCCHHHHHHHHHHHHHHHhHhhhhhhhhh--HhHHHHHHhhccCCChhHHHhhhHHHHHHHhhcCCC--
Q 001487 882 LSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYY--ETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSV-- 957 (1069)
Q Consensus 882 l~~~l~~~l~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~--~~l~~~ll~~l~~~~~~vr~~a~~~lg~l~~~~~~~-- 957 (1069)
++|++....++.+..-.|-+++++||.+++.....+..|+ .+++|..++-+...++.-+..|.+.++.+.....-.
T Consensus 125 lYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~GSelSKtvA~fIlqKIlldD~GL~Y 204 (293)
T KOG3036|consen 125 LYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESGSELSKTVATFILQKILLDDVGLYY 204 (293)
T ss_pred hHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcccHHHHHHHHHHHHHHhhccccHHH
Confidence 4555443333334456799999999999999888777643 689999999999999999999999999987654311
Q ss_pred ----ch--HHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHHHHHh
Q 001487 958 ----VK--PLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQ 999 (1069)
Q Consensus 958 ----~~--~~~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~ 999 (1069)
+. ..+..++..+.-.+.+. ....+-.++++|.-|+..
T Consensus 205 iCqt~eRF~av~~~L~kmv~~l~~~-----ps~RllKhviRcYlrLsd 247 (293)
T KOG3036|consen 205 ICQTAERFSAVALVLGKMVFQLVSM-----PSPRLLKHVIRCYLRLSD 247 (293)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHhcC-----CCHHHHHHHHHHHHHhcC
Confidence 11 12334455544444322 245777888888777754
No 270
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=85.27 E-value=18 Score=32.88 Aligned_cols=76 Identities=8% Similarity=0.196 Sum_probs=59.0
Q ss_pred HHHHHHHhhCCCCChhHHHHHHHHHHHhHhhhchhHHhhh-hhhhHHHHHhhccC-----CCChhHHHHHHHHHHHhhhc
Q 001487 418 QVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQF-HPQVLPALAGAMDD-----FQNPRVQAHAASAVLNFSEN 491 (1069)
Q Consensus 418 ~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~~il~~l~~~l~~-----~~~~~v~~~a~~al~~l~~~ 491 (1069)
..+..+.+.+++++|.+...|+..|..+.+.++..+.... ...++..+++.+.. ..+..|+..+...+....+.
T Consensus 38 ~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 117 (139)
T cd03567 38 LAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLE 117 (139)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 4667788889999999999999999999999988774333 24566666666642 24679999999999999887
Q ss_pred CC
Q 001487 492 CT 493 (1069)
Q Consensus 492 ~~ 493 (1069)
++
T Consensus 118 f~ 119 (139)
T cd03567 118 LP 119 (139)
T ss_pred hc
Confidence 76
No 271
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=85.00 E-value=60 Score=34.90 Aligned_cols=190 Identities=16% Similarity=0.165 Sum_probs=109.1
Q ss_pred CCCHHHHHHHHHHHHhhcccCCCCcc-cC--CCHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCC--Cch
Q 001487 68 SPHPEARAMAAVLLRKLLTRDDSFLW-PR--LSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPEN--GWP 142 (1069)
Q Consensus 68 ~~~~~~R~~a~i~L~~~i~~~~~~~w-~~--l~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~~~--~w~ 142 (1069)
.-+-+.|.-++.++.+.++......+ +. .-...+..+...|+.+.. .+.+--..+..+...++++.-.. -++
T Consensus 87 ~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~---~~dial~~g~mlRec~k~e~l~~~iL~~ 163 (335)
T PF08569_consen 87 KLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYE---NPDIALNCGDMLRECIKHESLAKIILYS 163 (335)
T ss_dssp GS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGG---STTTHHHHHHHHHHHTTSHHHHHHHHTS
T ss_pred hCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhc---CccccchHHHHHHHHHhhHHHHHHHhCc
Confidence 45678888888888888876521111 00 000111233333444333 33344444555555554321000 113
Q ss_pred hhHHHHHHhhcCCChhHHHHHHHHHHHhhhhh----hhhcchhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhCC
Q 001487 143 ELLPFMFQCVSSDSVKLQESAFLIFAQLSQYI----GDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTS 218 (1069)
Q Consensus 143 ~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~----~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~ 218 (1069)
+.+-.+++.++.++-.+-..|+.++..+.... .+.+..+++.++..+...+.++ +.-+|..+++.|+.++..-+.
T Consensus 164 ~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~-NYvtkrqslkLL~ellldr~n 242 (335)
T PF08569_consen 164 ECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESS-NYVTKRQSLKLLGELLLDRSN 242 (335)
T ss_dssp GGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-S-SHHHHHHHHHHHHHHHHSGGG
T ss_pred HHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCC-CeEeehhhHHHHHHHHHchhH
Confidence 34444667788888788888888888776542 2335567888999888999997 999999999999999864321
Q ss_pred cchHhHHHhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHccc
Q 001487 219 SADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTE 262 (1069)
Q Consensus 219 ~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~~~ 262 (1069)
-.-...+.. =|.-++.+...+.+....++..|+.++--++.+.
T Consensus 243 ~~vm~~yi~-~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp 285 (335)
T PF08569_consen 243 FNVMTRYIS-SPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANP 285 (335)
T ss_dssp HHHHHHHTT--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHC-CHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCC
Confidence 000001111 1245666777777888889999998888777643
No 272
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=84.97 E-value=1.2e+02 Score=38.53 Aligned_cols=73 Identities=16% Similarity=0.194 Sum_probs=49.9
Q ss_pred HHHHHHHhhCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhc
Q 001487 418 QVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSEN 491 (1069)
Q Consensus 418 ~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~ 491 (1069)
..+..+++.|+..+--|...+|-+|-.+....+..-..-+-...++.+.+.+.+ ++..+...+..+|.+++..
T Consensus 530 NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhS-KhkMIa~GSaaALrNLln~ 602 (2195)
T KOG2122|consen 530 NCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHS-KHKMIAMGSAAALRNLLNF 602 (2195)
T ss_pred hHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhh-hhhhhhhhHHHHHHHHhcC
Confidence 456788888888887777777777766664433222111234566777777777 7888888888899888754
No 273
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=84.77 E-value=4.5 Score=35.23 Aligned_cols=67 Identities=15% Similarity=0.125 Sum_probs=42.4
Q ss_pred hhhhhcCCCCHHHHHHHHHHHHHHHhHhhhhhhhhhH--hHHHHHHhhccCCChhHHHhhhHHHHHHHhh
Q 001487 886 LTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYE--TYLPFLLEACNDENQDVRQAAVYGLGVCAEF 953 (1069)
Q Consensus 886 l~~~l~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~--~l~~~ll~~l~~~~~~vr~~a~~~lg~l~~~ 953 (1069)
+.+++..+.++.....|..=||++++..+.. ...+. ..-..++..+.++|+.||..|..|+..+...
T Consensus 48 L~~lL~~s~d~~~laVac~Dig~~vr~~p~g-r~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~ 116 (119)
T PF11698_consen 48 LIKLLDKSDDPTTLAVACHDIGEFVRHYPNG-RNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMVN 116 (119)
T ss_dssp HHHHH-SHHHHHHHHHHHHHHHHHHHH-GGG-HHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCCCcceeehhhcchHHHHHHChhH-HHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 3334423333344455666799999888664 22222 2235678888999999999999999988754
No 274
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=84.77 E-value=12 Score=34.21 Aligned_cols=78 Identities=10% Similarity=0.157 Sum_probs=59.3
Q ss_pred chhhHHHHHHhhcCCChhHHHHHHHHHHHhhhhhhhhcchhH--HHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhCC
Q 001487 141 WPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHL--KHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTS 218 (1069)
Q Consensus 141 w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~ 218 (1069)
=.+.+..|..-++++++++...|+.+|..+++..|..|...+ ..++..+...+.+..++.|+..++..+..+...+.+
T Consensus 39 ~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 118 (142)
T cd03569 39 PKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFRN 118 (142)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhCC
Confidence 346777788888889999999999999999999887654322 335555555555334889999999999999988753
No 275
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.21 E-value=70 Score=35.03 Aligned_cols=93 Identities=13% Similarity=0.151 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCC
Q 001487 394 HHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQ 473 (1069)
Q Consensus 394 r~aal~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~ 473 (1069)
-.+|+..|-.+++..+-...-.-..++..++++|.-.+...-......|..++-...... .---..++..|.+.+.. .
T Consensus 280 Lrva~ylLlNlAed~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~-~M~~~~iveKL~klfp~-~ 357 (791)
T KOG1222|consen 280 LRVAVYLLLNLAEDISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKI-VMEQNGIVEKLLKLFPI-Q 357 (791)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchH-HHHhccHHHHHHHhcCC-C
Confidence 345677777788776655555556788888888887776666666666666554333222 11234577777777777 7
Q ss_pred ChhHHHHHHHHHHHh
Q 001487 474 NPRVQAHAASAVLNF 488 (1069)
Q Consensus 474 ~~~v~~~a~~al~~l 488 (1069)
+++++......+-++
T Consensus 358 h~dL~~~tl~LlfNl 372 (791)
T KOG1222|consen 358 HPDLRKATLMLLFNL 372 (791)
T ss_pred CHHHHHHHHHHhhhc
Confidence 787777766665444
No 276
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=84.20 E-value=19 Score=32.60 Aligned_cols=96 Identities=11% Similarity=0.110 Sum_probs=64.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhchhhhHHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHHhHhhhhhhh-hhH-hHHHHHH
Q 001487 852 QEEEVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALK-YYE-TYLPFLL 929 (1069)
Q Consensus 852 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~r~~a~~~l~~l~~~~~~~~~~-~~~-~l~~~ll 929 (1069)
+++.+...+++.+..- +.... ..+..+.+.+ ++.++.+...|+.++..++++||..+.. +-. +++..+.
T Consensus 16 ~D~~~il~icd~I~~~----~~~~k----~a~raL~krl-~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~ 86 (133)
T cd03561 16 PDWALNLELCDLINLK----PNGPK----EAARAIRKKI-KYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELV 86 (133)
T ss_pred ccHHHHHHHHHHHhCC----CCCHH----HHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHH
Confidence 4466666667766532 11111 1334444555 4567888889999999999999997654 322 5555666
Q ss_pred hhccC---CChhHHHhhhHHHHHHHhhcCC
Q 001487 930 EACND---ENQDVRQAAVYGLGVCAEFGGS 956 (1069)
Q Consensus 930 ~~l~~---~~~~vr~~a~~~lg~l~~~~~~ 956 (1069)
+.+.+ .++.||+-+...+..+....+.
T Consensus 87 ~l~~~~~~~~~~Vk~kil~ll~~W~~~f~~ 116 (133)
T cd03561 87 KIAKNSPKYDPKVREKALELILAWSESFGG 116 (133)
T ss_pred HHhCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 66654 4789999999999998887764
No 277
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=84.19 E-value=26 Score=31.93 Aligned_cols=96 Identities=11% Similarity=0.035 Sum_probs=64.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhchhhhHHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHHhHhhhhhhh--hhHhHHHHHH
Q 001487 852 QEEEVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALK--YYETYLPFLL 929 (1069)
Q Consensus 852 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~r~~a~~~l~~l~~~~~~~~~~--~~~~l~~~ll 929 (1069)
++|.+...+|+.+.. .+.... ..+..+.+.+ .+.++.+-..|+.++..++++||..+-. .-..++..++
T Consensus 17 ~dw~~ileicD~In~----~~~~~k----~a~rai~krl-~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~ 87 (139)
T cd03567 17 EDWEAIQAFCEQINK----EPEGPQ----LAVRLLAHKI-QSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELI 87 (139)
T ss_pred CCHHHHHHHHHHHHc----CCccHH----HHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHH
Confidence 456666667777743 122111 1233344444 4667778888999999999999997644 2246666666
Q ss_pred hhccC------CChhHHHhhhHHHHHHHhhcCC
Q 001487 930 EACND------ENQDVRQAAVYGLGVCAEFGGS 956 (1069)
Q Consensus 930 ~~l~~------~~~~vr~~a~~~lg~l~~~~~~ 956 (1069)
+.+.+ .+..|++-....+..+....+.
T Consensus 88 kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~ 120 (139)
T cd03567 88 KLVSPKYLGSRTSEKVKTKIIELLYSWTLELPH 120 (139)
T ss_pred HHhccccCCCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 66642 5689999999988888876653
No 278
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.05 E-value=65 Score=41.35 Aligned_cols=160 Identities=17% Similarity=0.244 Sum_probs=95.6
Q ss_pred chhhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCCChhHHHHHHHHHHHhhhh-hhhhcc---hhHHHHHHHHHH
Q 001487 116 SAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQY-IGDTLT---PHLKHLHAVFLN 191 (1069)
Q Consensus 116 ~~~~vr~~~~~~i~~i~~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~-~~~~~~---~~~~~l~~~l~~ 191 (1069)
.+..+|..+.+|++.-++ ..|..++..+-......+....+.+...+..+... +...+. ..+...++.+..
T Consensus 1049 ~s~~Irelv~rC~~~nik-----SGWk~if~i~~~aA~~~~~~iv~~~fe~v~~i~~~~f~~~~~~~~~sf~d~v~cl~~ 1123 (1514)
T KOG0929|consen 1049 SSAEIRELVVRCISSNIK-----SGWKNIFKIFTTAASDSSKNIVELAFETVSKILQELFENVFPQEMDSFKDCVKCLEE 1123 (1514)
T ss_pred CcchhHHHHHhhhhhhhh-----hhhhHHHHHHHHhhccchhhHHHHhHHHHHHHHHHhhhhhchhhhHHHHHHHHHHHH
Confidence 466788888888883222 58999999999988888888888888887755544 333232 123444555555
Q ss_pred hhcCCCChHHHHHHHHHHHHHHHhhCCc---ch--------Hh-HHHhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHH
Q 001487 192 CLTNSNNPDVKIAALNAVINFIQCLTSS---AD--------RD-RFQDLLPLMMRTLTESLNNGNEATAQEALELLIELA 259 (1069)
Q Consensus 192 ~l~~~~~~~vr~~a~~~l~~l~~~~~~~---~~--------~~-~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~l~~l~ 259 (1069)
...+...+.....+++.+..++....+. .. .+ ....++|.+.+. .....+...++|..+++.+-.+.
T Consensus 1124 F~~~~~~~~~s~~aI~~lr~ca~k~~e~~~~~~~~~~~~~~~~~~~~~wfP~l~~l-s~i~~~~~~~vr~~al~vlF~il 1202 (1514)
T KOG0929|consen 1124 FTKNLGFPDDSLNAIRFLRLCALKLAEGVYNEKLKVGKDSEFDVWNSGWFPMLFQL-SKIINDYRLEVRKRALEVLFDIL 1202 (1514)
T ss_pred HHHhcCCCccchHHHHHHHHHHHHhccccchhhcccccccccccceeeeehhHhhh-hHHhhccHHHHHHHHHHHHHHHH
Confidence 4443323344445555554444443322 00 01 122355554443 22233567899999999999999
Q ss_pred ccccHHHHHhH-HHHHHHHHHHh
Q 001487 260 GTEPRFLRRQL-VDVVGSMLQIA 281 (1069)
Q Consensus 260 ~~~~~~~~~~~-~~l~~~l~~~~ 281 (1069)
..++..|.++. ..++..++.+.
T Consensus 1203 ~~~g~~F~~~~We~v~~~~fpIF 1225 (1514)
T KOG0929|consen 1203 KEHGDDFSKEFWEDVFRILFPIF 1225 (1514)
T ss_pred HhhhhhccHHHHHHHHHheeecc
Confidence 88887776543 34555444443
No 279
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=83.61 E-value=3.5 Score=35.25 Aligned_cols=62 Identities=13% Similarity=0.231 Sum_probs=55.9
Q ss_pred ccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhHhh-hHhhHhhhhHHHHHHHhhc
Q 001487 495 EILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEH-FQKYYDAVMPFLKAILVNA 556 (1069)
Q Consensus 495 ~~~~~~l~~i~~~l~~~l~~~~~~v~~~al~~l~~l~~~~~~~-~~~~~~~i~~~l~~~l~~~ 556 (1069)
+.+.||++.++..+...+.+-.++||..++..+.-+.+.+++. +..+..++++.....+...
T Consensus 3 ~~l~p~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~~~ 65 (102)
T PF12333_consen 3 ELLSPFFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLGWS 65 (102)
T ss_pred HHHHhHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHCCC
Confidence 4578999999999999999999999999999999999999988 6778889999999888764
No 280
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.43 E-value=1.5e+02 Score=38.19 Aligned_cols=182 Identities=13% Similarity=0.049 Sum_probs=99.5
Q ss_pred hhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHH
Q 001487 432 PRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVL 511 (1069)
Q Consensus 432 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~i~~~l~~~ 511 (1069)
+.....++.|.+........ ....+.++..+.....+..++++|.++...+..++=...--......+.|-..+.+.
T Consensus 1501 d~a~~~a~~~~~lm~~~~~~---~~l~~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~ 1577 (1710)
T KOG1851|consen 1501 DLAKNSALLCHSLMSLSWIG---HHLQPEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESL 1577 (1710)
T ss_pred hHHHHHHHHHHHHHHhhccc---hhhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHH
Confidence 33444555555554433221 123455666665443343688999998888776553211112346677888889999
Q ss_pred hhcCChhHHHHHHHHHHHHHHhhHhhhHhhHhhhhHHHHHHHhhccCccccchhhHHHHHHHHHHHhhChhhhhhhHHHH
Q 001487 512 LQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQV 591 (1069)
Q Consensus 512 l~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i 591 (1069)
+.+....+|+.|..+++-+.......+.+ .............. .+......|...+|.++-+++ -.+.-++++.
T Consensus 1578 l~D~~i~vre~Aa~~Lsgl~~~s~~~~~~---~k~d~~~~~~~s~s--~~~i~~HgavlgLgA~VlafP-y~vP~wip~~ 1651 (1710)
T KOG1851|consen 1578 LNDDQIEVREEAAKCLSGLLQGSKFQFVS---DKRDTTSNILQSKS--KDEIKAHGAVLGLGAIVLAFP-YVVPLWIPKP 1651 (1710)
T ss_pred HcchHHHHHHHHHHHHHHHHhccccccch---Hhhhhhhhhhhhcc--hHHHHhhhhHHHHHHHHHhcc-ccchhhhHHH
Confidence 99988899999999999998765544433 11122222222111 112233446778888887776 3233333333
Q ss_pred HHHHHHHhcCCCCCCCchhhHHHHHHHHHHHHhcC
Q 001487 592 MEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQ 626 (1069)
Q Consensus 592 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 626 (1069)
+..+-... .+..+++..+-+++.++-....+
T Consensus 1652 L~~Ls~fa----~e~~~i~~tvkktvseFrrth~D 1682 (1710)
T KOG1851|consen 1652 LMNLSSFA----RESAAIKQTVKKTVSEFRRTHAD 1682 (1710)
T ss_pred HHHHHhhc----CCchHHHHHHHHHHHHHHHHhhh
Confidence 33222211 12245666666666555444333
No 281
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=82.79 E-value=63 Score=33.44 Aligned_cols=70 Identities=14% Similarity=0.165 Sum_probs=45.1
Q ss_pred HHHHHHHhhcCCChH-HHHHHHHHHHHHHhhcHHHHHHhHH-HHHHHHHhhCCCCChhHHHHHHHHHHHhHh
Q 001487 378 ASEQLPAYLAAPEWQ-KHHAALIALAQIAEGCAKVMVKNLE-QVLSMVLNSFRDPHPRVRWAAINAIGQLST 447 (1069)
Q Consensus 378 l~~~l~~~l~~~~~~-~r~aal~~l~~l~~~~~~~~~~~~~-~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 447 (1069)
++..+...+++.++. .-..|+.-++.+++..|+...-... ..-..++..+++++++||..|+.++..+..
T Consensus 357 i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 357 IVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCIS 428 (432)
T ss_pred HHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence 344444555544433 2345677788888877764432222 234577888999999999999998876653
No 282
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=82.46 E-value=10 Score=39.84 Aligned_cols=105 Identities=12% Similarity=0.219 Sum_probs=73.6
Q ss_pred HHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhHhhhchhHHhhh-hhhh
Q 001487 383 PAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQF-HPQV 461 (1069)
Q Consensus 383 ~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~~i 461 (1069)
.+...+.+|.....+|..++.-.++ -...+..|.++|+..+|.|.-.|+..++.++..|+..+.... ...+
T Consensus 18 ~e~nT~enW~~IlDvCD~v~~~~~~--------~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F 89 (462)
T KOG2199|consen 18 DEKNTSENWSLILDVCDKVGSDPDG--------GKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDF 89 (462)
T ss_pred CcccccccHHHHHHHHHhhcCCCcc--------cHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhH
Confidence 3455677898776666555543322 235678888999999999999999999999999887664333 2334
Q ss_pred HHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcc
Q 001487 462 LPALAGAMDDFQNPRVQAHAASAVLNFSENCTPE 495 (1069)
Q Consensus 462 l~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~ 495 (1069)
...|...+.+..++.|++.....+..+.+.+..+
T Consensus 90 ~~el~al~~~~~h~kV~~k~~~lv~eWsee~K~D 123 (462)
T KOG2199|consen 90 TTELRALIESKAHPKVCEKMRDLVKEWSEEFKKD 123 (462)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhccC
Confidence 4444444553367889888888888888877644
No 283
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=81.71 E-value=2.1 Score=29.35 Aligned_cols=25 Identities=32% Similarity=0.497 Sum_probs=21.8
Q ss_pred HHHHHHHHhhCCCCChhHHHHHHHH
Q 001487 417 EQVLSMVLNSFRDPHPRVRWAAINA 441 (1069)
Q Consensus 417 ~~i~~~l~~~l~d~~~~vr~~a~~~ 441 (1069)
+.+...+...+.|+++.||.+|...
T Consensus 17 ~~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 17 SDVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHH
Confidence 3678888999999999999999865
No 284
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=81.60 E-value=39 Score=32.85 Aligned_cols=85 Identities=18% Similarity=0.206 Sum_probs=59.8
Q ss_pred HHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHh-hCCcchHhHHHhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHc
Q 001487 182 LKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQC-LTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAG 260 (1069)
Q Consensus 182 ~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~-~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~ 260 (1069)
+...++.+++...++ +..+|..|++.+..++.. +- .+ . ..+..+..+..++++.+|..|...+..+.+
T Consensus 6 ~Qryl~~Il~~~~~~-~~~vr~~Al~~l~~il~qGLv---nP---~----~cvp~lIAL~ts~~~~ir~~A~~~l~~l~e 74 (187)
T PF12830_consen 6 VQRYLKNILELCLSS-DDSVRLAALQVLELILRQGLV---NP---K----QCVPTLIALETSPNPSIRSRAYQLLKELHE 74 (187)
T ss_pred HHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHhcCCC---Ch---H----HHHhHhhhhhCCCChHHHHHHHHHHHHHHH
Confidence 344455555566666 889999999999988764 11 11 1 344455556668899999999999999999
Q ss_pred cccHHHHHhHHHHHHHH
Q 001487 261 TEPRFLRRQLVDVVGSM 277 (1069)
Q Consensus 261 ~~~~~~~~~~~~l~~~l 277 (1069)
.++..+...+.+-+...
T Consensus 75 K~~s~v~~~~~~gi~~a 91 (187)
T PF12830_consen 75 KHESLVESRYSEGIRLA 91 (187)
T ss_pred HhHHHHHHHHHHHHHHH
Confidence 99888776555444433
No 285
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=81.38 E-value=21 Score=33.48 Aligned_cols=133 Identities=17% Similarity=0.102 Sum_probs=73.6
Q ss_pred CCCHHHHHHHHHHHHhhcccCCCCcccCCCHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCC----CCchh
Q 001487 68 SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPE----NGWPE 143 (1069)
Q Consensus 68 ~~~~~~R~~a~i~L~~~i~~~~~~~w~~l~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~~----~~w~~ 143 (1069)
..++++|..+.+++-+++... ..+..+.+ ...++.+..+....-...+..+++.+......- =.-+.
T Consensus 16 ~~~~~~r~~a~v~l~k~l~~~--------~~~~~~~~-~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg 86 (157)
T PF11701_consen 16 RQPEEVRSHALVILSKLLDAA--------REEFKEKI-SDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEG 86 (157)
T ss_dssp TTSCCHHHHHHHHHHHHHHHH--------HHHHHHHH-HHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTT
T ss_pred CCCHhHHHHHHHHHHHHHHHh--------HHHHHHHH-HHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhh
Confidence 567899999999999986432 12222222 233333333333344444444554443211000 01246
Q ss_pred hHHHHHHhhc--CCChhHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHhhcCCCChH-HHHHHHHHHH
Q 001487 144 LLPFMFQCVS--SDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPD-VKIAALNAVI 210 (1069)
Q Consensus 144 ll~~l~~~~~--~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~-vr~~a~~~l~ 210 (1069)
+++.+...+. +.+......+++++..-|..-... .......++.+....+.+.+.. +|..|+-+|.
T Consensus 87 ~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r-~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~ 155 (157)
T PF11701_consen 87 FLESLLPLASRKSKDRKVQKAALELLSAACIDKSCR-TFISKNYVSWLKELYKNSKDDSEIRVLAAVGLC 155 (157)
T ss_dssp HHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHH-HCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHH-HHHHHHHHHHHHHHHccccchHHHHHHHHHHHh
Confidence 7788888877 677778888888887666442111 1135556667777775543555 7777776654
No 286
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=81.12 E-value=15 Score=30.14 Aligned_cols=71 Identities=14% Similarity=0.260 Sum_probs=52.4
Q ss_pred hHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhCCcchHhHHHhhHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 001487 181 HLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLI 256 (1069)
Q Consensus 181 ~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~l~ 256 (1069)
+...++..+...+.+..+.+||...++|+..++... .+.+.+=++.+++.+.....+++++....|++++.
T Consensus 14 fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~-----~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 14 FQKDFLKPFEYIMSNNPSIDVRELILECILQILQSR-----GENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHh-----HHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 345566666666555458899999999999999874 23445557788888888777778888888887764
No 287
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.04 E-value=4.1 Score=38.84 Aligned_cols=77 Identities=17% Similarity=0.068 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHhHhhhhhhhhhHhHHHHHHhhccCCChhHHHhhhHHHHHHHhhcC---CCchHHHHHHHHHHHHhhc
Q 001487 898 ERRIAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGG---SVVKPLVGEALSRLNVVIR 974 (1069)
Q Consensus 898 ~r~~a~~~l~~l~~~~~~~~~~~~~~l~~~ll~~l~~~~~~vr~~a~~~lg~l~~~~~---~~~~~~~~~~l~~L~~~l~ 974 (1069)
-|..|-..+.+++...|+.+.+.+++++..+-.++...|..|...+...|..+....+ ..+.|||.++|+.+ +.+.
T Consensus 130 yrf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~~vG~aLVPfYRQlLp~~-n~~k 208 (262)
T KOG3961|consen 130 YRFVARQGITDLLLAGGEKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVGCVGAALVPFYRQLLPVL-NTFK 208 (262)
T ss_pred cchhhhhcHHHHHHhcccccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccccchhhhhHHHHhhhhh-hhhc
Confidence 3667777888999999999999999999999999999999999999999888877665 67889999999988 4444
Q ss_pred C
Q 001487 975 H 975 (1069)
Q Consensus 975 ~ 975 (1069)
.
T Consensus 209 ~ 209 (262)
T KOG3961|consen 209 N 209 (262)
T ss_pred c
Confidence 3
No 288
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=80.95 E-value=5 Score=33.08 Aligned_cols=60 Identities=25% Similarity=0.223 Sum_probs=46.8
Q ss_pred hHHHhhhHHHHHHHhhcCCCchHHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHHHHHhhcCCC
Q 001487 938 DVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQFHRDS 1004 (1069)
Q Consensus 938 ~vr~~a~~~lg~l~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~ 1004 (1069)
..|.+++.|||.++...|..+-++++++|..|.+...++ ..++..+-.+++.+-+++.+.
T Consensus 4 ~~rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~~-------~~I~~tvk~tl~eFkrtH~D~ 63 (90)
T PF11919_consen 4 RRRHAAVLGLSALVLAFPYDVPPWMPEVLEELARHANDP-------QPIRTTVKKTLSEFKRTHQDT 63 (90)
T ss_dssp HHHHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS--------SSHHHHTHHHHHHHHHHTSTT
T ss_pred HHHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCCC-------chHHHHHHHHHHHHHHhCccc
Confidence 346788899999999999989899999999998876643 368888889999999998765
No 289
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=80.38 E-value=3 Score=34.38 Aligned_cols=61 Identities=13% Similarity=0.187 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhHhhhchhH
Q 001487 392 QKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDL 453 (1069)
Q Consensus 392 ~~r~aal~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~ 453 (1069)
..|++++.+|++++...+-.+.+.+++++..|....+| ...|+..+-.+++.+-+.-.+..
T Consensus 4 ~~rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~-~~~I~~tvk~tl~eFkrtH~D~W 64 (90)
T PF11919_consen 4 RRRHAAVLGLSALVLAFPYDVPPWMPEVLEELARHAND-PQPIRTTVKKTLSEFKRTHQDTW 64 (90)
T ss_dssp HHHHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS--SSHHHHTHHHHHHHHHHTSTTH
T ss_pred HHHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCC-CchHHHHHHHHHHHHHHhCcccH
Confidence 56899999999999998887778999999888888886 56788899999999887666544
No 290
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=80.02 E-value=1.4e+02 Score=35.53 Aligned_cols=150 Identities=21% Similarity=0.194 Sum_probs=81.1
Q ss_pred hhhHHHHHHhhcCCChhHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhCCcch
Q 001487 142 PELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSAD 221 (1069)
Q Consensus 142 ~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~ 221 (1069)
+.-+..+.+.+.+...... .+..++..+......--.+.+..+.+++...-.. ....++..++-+++.++........
T Consensus 356 ~~a~~~i~~~i~~~~~~~~-ea~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~-~~~~l~~sa~l~~~~lv~~~c~~~~ 433 (574)
T smart00638 356 PPALKFIKQWIKNKKITPL-EAAQLLAVLPHTARYPTEEILKALFELAESPEVQ-KQPYLRESALLAYGSLVRRYCVNTP 433 (574)
T ss_pred HHHHHHHHHHHHcCCCCHH-HHHHHHHHHHHhhhcCCHHHHHHHHHHhcCcccc-ccHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4556777777766543221 2333333333322111112344444433322112 2678999999999999874321111
Q ss_pred ---HhHHHhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHccccHHHHHhHHHHHHHHHHHh-cCCCcchHHHHHHHHH
Q 001487 222 ---RDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIA-EAESLEEGTRHLAIEF 297 (1069)
Q Consensus 222 ---~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~~~r~~a~~~ 297 (1069)
......+++.+.+.+..+.+..+.+.+..++.+|+.+.- +. .+..+..++ ++......+|..|+..
T Consensus 434 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~--~~--------~i~~l~~~l~~~~~~~~~iR~~Av~A 503 (574)
T smart00638 434 SCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGH--PS--------SIKVLEPYLEGAEPLSTFIRLAAILA 503 (574)
T ss_pred CCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCC--hh--------HHHHHHHhcCCCCCCCHHHHHHHHHH
Confidence 122345666777777766666666777777787776543 11 111112222 2344567899999999
Q ss_pred HHHHHH
Q 001487 298 VITLAE 303 (1069)
Q Consensus 298 l~~l~~ 303 (1069)
+..++.
T Consensus 504 lr~~a~ 509 (574)
T smart00638 504 LRNLAK 509 (574)
T ss_pred HHHHHH
Confidence 987776
No 291
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=79.84 E-value=73 Score=32.32 Aligned_cols=74 Identities=14% Similarity=0.117 Sum_probs=45.9
Q ss_pred chh-hHHHHHHhhcC-CChhHHHHHHHHHHHhhhhhhhhcchhH--HHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHh
Q 001487 141 WPE-LLPFMFQCVSS-DSVKLQESAFLIFAQLSQYIGDTLTPHL--KHLHAVFLNCLTNSNNPDVKIAALNAVINFIQC 215 (1069)
Q Consensus 141 w~~-ll~~l~~~~~~-~~~~~r~~al~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~ 215 (1069)
.|- +.|++-...++ +....|-.++-+++.+++....+...++ .+++|..+..++.+ +.--+..|.-++..++..
T Consensus 92 iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~G-selSKtvAtfIlqKIL~d 169 (262)
T PF04078_consen 92 IPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFG-SELSKTVATFILQKILLD 169 (262)
T ss_dssp GGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS--HHHHHHHHHHHHHHHHS
T ss_pred chhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhc-cHHHHHHHHHHHHHHHcc
Confidence 343 34555333322 2357899999999999986544432222 35888888888886 777777788877777654
No 292
>PF08146 BP28CT: BP28CT (NUC211) domain; InterPro: IPR012954 This C-terminal domain is found in BAP28-like nucleolar proteins []. The bap28 mutation leads to abnormalities in the brain, starting at midsomitogenesis stages. Mutant zebrafish embryos display excessive apoptosis, especially in the central nervous system (CNS) that results in death. The mutation affects a gene that encodes a large protein with high similarity to the uncharacterised human protein BAP28 and lower similarity to yeast Utp10. Utp10 is a component of a nucleolar U3 small nucleolar RNA-containing RNP complex that is required for transcription of ribosomal DNA and for processing of 18 S rRNA. Zebrafish Bap28 is also required for rRNA transcription and processing, with a major effect on 18S rRNA maturation. Bap28 is therefore required for cell survival in the CNS through its role in rRNA synthesis and processing [].
Probab=79.66 E-value=32 Score=32.09 Aligned_cols=98 Identities=18% Similarity=0.248 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHhh-hchhhhHHHHHhhhhhhhcC--CCCHHHHHHH-HHHHHHHHhHhhhhhhhhhHhHHHHHHhhccC
Q 001487 859 QVGEILGTLIKTFK-AAFLPFFDELSSYLTPMWGK--DKTAEERRIA-ICIFDDVAEQCREAALKYYETYLPFLLEACND 934 (1069)
Q Consensus 859 ~~~~~l~~l~~~~~-~~~~~~~~~l~~~l~~~l~~--~~~~~~r~~a-~~~l~~l~~~~~~~~~~~~~~l~~~ll~~l~~ 934 (1069)
.+.+++-.++-.+. ..|.|.|..+..|-..-+.+ ......|..+ ++.+..+.+....-+.+|...++....+.|+.
T Consensus 40 ~v~~~~~~lV~KLnE~~FRPlF~~l~dWA~~~l~~~~~~~~~~R~itfy~l~~~l~e~LKslf~~Y~~~ll~~~~~~L~~ 119 (153)
T PF08146_consen 40 SVISAFVSLVLKLNEATFRPLFLKLVDWATSGLPKSDSSGSRARLITFYRLLNALAEKLKSLFTPYFSYLLDNAVDLLKQ 119 (153)
T ss_pred HHHHHHHHHHHHcccchhHhHHHHHHHHHcccCCcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555 46899999999987553322 2233446555 57888899999888889998888887666643
Q ss_pred CC----------hhHHHhhhHHHHHHHhhcCC
Q 001487 935 EN----------QDVRQAAVYGLGVCAEFGGS 956 (1069)
Q Consensus 935 ~~----------~~vr~~a~~~lg~l~~~~~~ 956 (1069)
-+ ...++....+|..+..+..+
T Consensus 120 ~~~~~~~~~~~~~~L~~~vL~~L~~~F~~D~~ 151 (153)
T PF08146_consen 120 FNSSKTESKSKSWELWRLVLSTLQKCFLHDQD 151 (153)
T ss_pred hhhccccchhhHHHHHHHHHHHHHHHHhhccC
Confidence 21 35555555566665555443
No 293
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=79.45 E-value=1.2e+02 Score=37.59 Aligned_cols=129 Identities=13% Similarity=0.230 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHhhcHHHHHHhHHHHHH-HHHhhCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCC
Q 001487 394 HHAALIALAQIAEGCAKVMVKNLEQVLS-MVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDF 472 (1069)
Q Consensus 394 r~aal~~l~~l~~~~~~~~~~~~~~i~~-~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~ 472 (1069)
|...+.......+...+.+...+..++. .++..-+|-.|.||..|...||..+...+..+. -..++..+-=.|.|
T Consensus 262 rle~Ll~~r~etqe~~d~i~~mi~~if~sVFVHRYRDV~~~IRaiCiqeLgiWi~~yP~~Fl---~dsYLKYiGWtLsD- 337 (1048)
T KOG2011|consen 262 RLESLLMLRKETQEQQDEIESMINDIFDSVFVHRYRDVDPDIRAICIQELGIWIKSYPEIFL---SDSYLKYIGWTLSD- 337 (1048)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeeecccCchHHHHHHHHHHHHHHHhccHHHh---cchHHHHhcceeec-
Confidence 5667766666666655556666666664 455677999999999999999988877765442 34566666667888
Q ss_pred CChhHHHHHHHHHHHhhhcCCc-ccccCchHHHHHHHHHHh-hcCChhHHHHHHHH
Q 001487 473 QNPRVQAHAASAVLNFSENCTP-EILTPYLDGIVSKLLVLL-QNGKQMVQEGALTA 526 (1069)
Q Consensus 473 ~~~~v~~~a~~al~~l~~~~~~-~~~~~~l~~i~~~l~~~l-~~~~~~v~~~al~~ 526 (1069)
.+..||..+..+|..+.+.-.. ..+.-+....=..++... .+.+..||...+..
T Consensus 338 k~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~RIVeMadrd~~~~Vrav~L~~ 393 (1048)
T KOG2011|consen 338 KNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDRIVEMADRDRNVSVRAVGLVL 393 (1048)
T ss_pred CccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHH
Confidence 8999999999999999887210 112233333334445544 33445565544433
No 294
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=79.17 E-value=24 Score=31.37 Aligned_cols=73 Identities=16% Similarity=0.165 Sum_probs=51.2
Q ss_pred cchHHHHHHHHHhhc-CCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhHhh
Q 001487 373 TIVPVASEQLPAYLA-APEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTD 448 (1069)
Q Consensus 373 ~~~~~l~~~l~~~l~-~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 448 (1069)
.+++.++|.+...+. +.....|.++++.++.++...+ .-.+.+..++..+......... ...+..++..++..
T Consensus 2 ~~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~-L~~~~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~q~ 75 (121)
T PF12397_consen 2 DILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVP-LSDEVLNALMESILKNWTQETV--QRQALICLIVLCQS 75 (121)
T ss_pred cHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcC-CcHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHc
Confidence 567889999999998 7788999999999999987643 1113344555555555554444 45677788777744
No 295
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=78.59 E-value=20 Score=42.75 Aligned_cols=93 Identities=17% Similarity=0.230 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHHHHHhhcCCCCC-H--hhHHHHHHhhCCCCCcHHHHHHHHHHHHH
Q 001487 960 PLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQFHRDSID-A--AQVVPAWLNCLPIKGDLIEAKIVHEQLCS 1036 (1069)
Q Consensus 960 ~~~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~-~--~~~~~~~l~~lp~~~d~~~~~~~~~~l~~ 1036 (1069)
|+-..++..|...+..+ ..|--++..||.+++.+|..++ + ..+++.+|.+|-...+......++.+|+.
T Consensus 66 P~~K~~~~~l~~~~~~~--------~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~Lim 137 (668)
T PF04388_consen 66 PHDKHLFDKLNDYFVKP--------SYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIM 137 (668)
T ss_pred ccHHHHHHHHHHHHcCc--------hhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHH
Confidence 56667888888888766 5778899999999999998663 2 36888899998766666666778888888
Q ss_pred HHhhcCCcccCcCcCChhHHHHHHHHHh
Q 001487 1037 MVERSDSDLLGPNHQYLPKIVSVFAEVS 1064 (1069)
Q Consensus 1037 l~~~~~~~~~~~~~~~~~~i~~~~~~~~ 1064 (1069)
|+-+-+..+-+ |+|.|+.|+..++
T Consensus 138 lLP~ip~~l~~----~L~~Lf~If~Rl~ 161 (668)
T PF04388_consen 138 LLPHIPSSLGP----HLPDLFNIFGRLL 161 (668)
T ss_pred HhccccchhhH----HHHHHHHHHHHHH
Confidence 88655555444 6999999998876
No 296
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=78.50 E-value=1e+02 Score=33.10 Aligned_cols=60 Identities=17% Similarity=0.087 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCC--hhHHHHHHHHHHHHHHhhH
Q 001487 476 RVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGK--QMVQEGALTALASVADSSQ 535 (1069)
Q Consensus 476 ~v~~~a~~al~~l~~~~~~~~~~~~l~~i~~~l~~~l~~~~--~~v~~~al~~l~~l~~~~~ 535 (1069)
..+.....+|..+......+.....++.|++.|...+..++ ++..-.-.+|+-.+....+
T Consensus 256 ~rkL~lLK~lAEMss~ttaq~a~q~Lpsi~elLk~yMpa~kt~ee~~fsyvEClly~~h~Lg 317 (460)
T KOG2213|consen 256 ERKLDLLKALAEMSSYTTAQAARQMLPSIVELLKEYMPAPKTGEEMQFSYVECLLYALHHLG 317 (460)
T ss_pred HHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHHhcccCCccHHHHHHHHHHHHHHHHHHh
Confidence 34455555555555444333334456666666655554332 3344444555555544444
No 297
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=78.04 E-value=72 Score=31.24 Aligned_cols=57 Identities=16% Similarity=0.155 Sum_probs=41.1
Q ss_pred HHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhHhhhchhH
Q 001487 397 ALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDL 453 (1069)
Q Consensus 397 al~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~ 453 (1069)
.+..++.+.+..+....+.+..++..+-+.-.+++...|..+-.++|...+.++|+.
T Consensus 20 vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe~ 76 (198)
T PF08161_consen 20 VLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPEQ 76 (198)
T ss_pred HHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHHH
Confidence 444555555555544456667777777776677777889999999999999999854
No 298
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=77.95 E-value=74 Score=32.83 Aligned_cols=125 Identities=15% Similarity=0.159 Sum_probs=74.6
Q ss_pred hHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCCChhHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHhhcCCCC
Q 001487 119 SISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNN 198 (1069)
Q Consensus 119 ~vr~~~~~~i~~i~~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~ 198 (1069)
......|..|+.++.. ...+.+-..+....+..-.....-.-.+...+.+.+. ..+-.+++..+...+.+. .
T Consensus 130 ~~~~~~A~~La~~a~~----~~~~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~---P~~~~~~l~~Ll~lL~n~-~ 201 (262)
T PF14225_consen 130 QECIEIAEALAQVAEA----QGLPNLARILSSYAKGRFRDKDDFLSQVVSYLREAFF---PDHEFQILTFLLGLLENG-P 201 (262)
T ss_pred HHHHHHHHHHHHHHHh----CCCccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhC---chhHHHHHHHHHHHHhCC-c
Confidence 3445677888888853 3456655555555544331222222233344444432 235567778888888887 8
Q ss_pred hHHHHHHHHHHHHHHHhhCCcchHhHHHhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHc
Q 001487 199 PDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAG 260 (1069)
Q Consensus 199 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~ 260 (1069)
..+|..+++.|..++...+-. ....+.++..+.+.++.+. -..|++++..++.
T Consensus 202 ~w~~~~~L~iL~~ll~~~d~~------~~~~~dlispllrlL~t~~---~~eAL~VLd~~v~ 254 (262)
T PF14225_consen 202 PWLRRKTLQILKVLLPHVDMR------SPHGADLISPLLRLLQTDL---WMEALEVLDEIVT 254 (262)
T ss_pred HHHHHHHHHHHHHHhccccCC------CCcchHHHHHHHHHhCCcc---HHHHHHHHHHHHh
Confidence 899999999999999886422 1144566777777665433 3455555555444
No 299
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=77.53 E-value=1.4e+02 Score=34.43 Aligned_cols=82 Identities=22% Similarity=0.170 Sum_probs=53.5
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhHhhhchhHHhh
Q 001487 377 VASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQ 456 (1069)
Q Consensus 377 ~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 456 (1069)
..+..+...+.=.++..|.+.=.+++-++-..|. -.++..+-+..+|.+..|-..+..++|.+..... ..
T Consensus 640 M~lR~f~h~l~yge~~iRravPLal~llsvSNPq------~~vlDtLsk~shd~D~eva~naIfamGLiGAGTn----NA 709 (878)
T KOG2005|consen 640 MVLRHFGHLLHYGEPHIRRAVPLALGLLSVSNPQ------VNVLDTLSKFSHDGDLEVAMNAIFAMGLIGAGTN----NA 709 (878)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhhccCCCc------chHHHHHHHhccCcchHHHHHHHHHhccccCCcc----hH
Confidence 4455566666667788888888888877655442 1356677777888888888888888887654432 22
Q ss_pred hhhhhHHHHHhh
Q 001487 457 FHPQVLPALAGA 468 (1069)
Q Consensus 457 ~~~~il~~l~~~ 468 (1069)
-+..++..+.+.
T Consensus 710 Rla~mLrqlaSY 721 (878)
T KOG2005|consen 710 RLAQMLRQLASY 721 (878)
T ss_pred HHHHHHHHHHHH
Confidence 344555555443
No 300
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=77.48 E-value=1.1e+02 Score=33.18 Aligned_cols=176 Identities=14% Similarity=0.093 Sum_probs=95.9
Q ss_pred ccchHHHHHHHHHhhcCCChHHHHHHHHHHHHHHh-----hcHHHHHHhHHHHHHHHHhhCCCCChhHH----HHHHHHH
Q 001487 372 NTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAE-----GCAKVMVKNLEQVLSMVLNSFRDPHPRVR----WAAINAI 442 (1069)
Q Consensus 372 ~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~-----~~~~~~~~~~~~i~~~l~~~l~d~~~~vr----~~a~~~l 442 (1069)
..+-+.++..+...+++....+|.+-+.+++.+.. .....+.+.++.++..+-+....+.+... .+|...+
T Consensus 56 ~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l 135 (339)
T PF12074_consen 56 SELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDSLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLL 135 (339)
T ss_pred cCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHH
Confidence 45667788889999999888899999999998875 22234445555666666556566554432 1122122
Q ss_pred HHhHhhhchhHHh-h---------hhh--hhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHH
Q 001487 443 GQLSTDLGPDLQN-Q---------FHP--QVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLV 510 (1069)
Q Consensus 443 ~~l~~~~~~~~~~-~---------~~~--~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~i~~~l~~ 510 (1069)
. ....-.+.+.. . --+ -+-+.++..+.+ .+-..-.+.++..+...............+-+.++.
T Consensus 136 ~-~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl~~---~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ 211 (339)
T PF12074_consen 136 A-LSSWKLDKIDSKNISFWSLALDPKPSFLLSEKVYSKLAS---EEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIY 211 (339)
T ss_pred H-hccccchhhhhhhhhhhhhccCCCcchhcCHHHHhccCC---HhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHH
Confidence 2 11100011000 0 000 111223333222 122233455555555554432111113556677788
Q ss_pred HhhcC--ChhHHHHHHHHHHHHHHhhHhhhHhhHhhhhHHHHHHHh
Q 001487 511 LLQNG--KQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILV 554 (1069)
Q Consensus 511 ~l~~~--~~~v~~~al~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~ 554 (1069)
++.++ .+.+|..++.++..+....+..+ -..++..+.+.+.
T Consensus 212 ll~s~~~~~~vR~~A~~~l~~l~~~~~~~l---~~~li~~l~~~l~ 254 (339)
T PF12074_consen 212 LLCSSNVSWKVRRAALSALKKLYASNPELL---SKSLISGLWKWLS 254 (339)
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHhChHHH---HHHHHHHHHHHHH
Confidence 88777 79999999999999887766542 2334444444443
No 301
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=77.30 E-value=35 Score=31.29 Aligned_cols=92 Identities=5% Similarity=0.075 Sum_probs=61.7
Q ss_pred HHHHHHHHhhCC-CCChhHHHHHHHHHHHhHhhhchhHHhhh-hhhhHHH-HHhhccCC--CChhHHHHHHHHHHHhhhc
Q 001487 417 EQVLSMVLNSFR-DPHPRVRWAAINAIGQLSTDLGPDLQNQF-HPQVLPA-LAGAMDDF--QNPRVQAHAASAVLNFSEN 491 (1069)
Q Consensus 417 ~~i~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~~il~~-l~~~l~~~--~~~~v~~~a~~al~~l~~~ 491 (1069)
...+..+.+.+. .+++.+...|+..+..+.+.++..+.... ...++.. +.+.+... ....|+..+...+......
T Consensus 37 k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~ 116 (141)
T cd03565 37 KDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADA 116 (141)
T ss_pred HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHH
Confidence 356667777776 57899999999999999999987764222 2355555 55655531 2458999999999999888
Q ss_pred CCcccccCchHHHHHHH
Q 001487 492 CTPEILTPYLDGIVSKL 508 (1069)
Q Consensus 492 ~~~~~~~~~l~~i~~~l 508 (1069)
++.+.-.+++..+...|
T Consensus 117 f~~~~~l~~i~~~y~~L 133 (141)
T cd03565 117 FRGSPDLTGVVEVYEEL 133 (141)
T ss_pred hCCCccchHHHHHHHHH
Confidence 76432224444444433
No 302
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=77.29 E-value=98 Score=37.09 Aligned_cols=94 Identities=21% Similarity=0.316 Sum_probs=65.2
Q ss_pred hhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhCCcchHhHHHhhHH-HHHHHHHHHHh-CCChHHHHHHHHHHHH
Q 001487 180 PHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLP-LMMRTLTESLN-NGNEATAQEALELLIE 257 (1069)
Q Consensus 180 ~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~-~~l~~l~~~l~-~~~~~~~~~~~~~l~~ 257 (1069)
|+-..++..+-..+..+ ..|..++..|+.++..-+.- +..+.. .++..|..++. +.+..+...|+.+|..
T Consensus 66 P~~K~~~~~l~~~~~~~---~~Rl~~L~Ll~~~v~~qp~~-----l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~Lim 137 (668)
T PF04388_consen 66 PHDKHLFDKLNDYFVKP---SYRLQALTLLGHFVRSQPPW-----LYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIM 137 (668)
T ss_pred ccHHHHHHHHHHHHcCc---hhHHHHHHHHHHHHhcCCch-----HHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHH
Confidence 34566666777777754 68999999999999864311 111111 23333444443 5567777889999999
Q ss_pred HHccccHHHHHhHHHHHHHHHHHh
Q 001487 258 LAGTEPRFLRRQLVDVVGSMLQIA 281 (1069)
Q Consensus 258 l~~~~~~~~~~~~~~l~~~l~~~~ 281 (1069)
++-..+..+.+|+++++.....++
T Consensus 138 lLP~ip~~l~~~L~~Lf~If~Rl~ 161 (668)
T PF04388_consen 138 LLPHIPSSLGPHLPDLFNIFGRLL 161 (668)
T ss_pred HhccccchhhHHHHHHHHHHHHHH
Confidence 998889999999999998877765
No 303
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=76.88 E-value=9.4 Score=41.99 Aligned_cols=137 Identities=13% Similarity=0.164 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHhhcHHHHHHhHH-HHHHHHHhhCCCCChhHHHHHHHHHHHhHhhhchhHHhhh-hhhhHHHHHhhccC
Q 001487 394 HHAALIALAQIAEGCAKVMVKNLE-QVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQF-HPQVLPALAGAMDD 471 (1069)
Q Consensus 394 r~aal~~l~~l~~~~~~~~~~~~~-~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~~il~~l~~~l~~ 471 (1069)
-.|++.+|.+++....-.-....+ ++...++..|.+|+.+|...+...+..+.-.+.+-- ..+ -..++..+.+.+..
T Consensus 406 ~~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~-~~fL~~~iIdvl~~~v~s 484 (743)
T COG5369 406 FVAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLG-AGFLEKSIIDVLVNLVMS 484 (743)
T ss_pred HHHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchH-HHHHHhhHHHHHHHHhhc
Confidence 345666666666554322222222 578889999999888887776666665554443322 222 34677777777777
Q ss_pred CCChhHHHHHHHHHHHhhhcCCcc-cccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHH
Q 001487 472 FQNPRVQAHAASAVLNFSENCTPE-ILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVAD 532 (1069)
Q Consensus 472 ~~~~~v~~~a~~al~~l~~~~~~~-~~~~~l~~i~~~l~~~l~~~~~~v~~~al~~l~~l~~ 532 (1069)
++...|....|.+..+.-++... .+.+....=+..++...+++...++++.+..+.++.-
T Consensus 485 -KDdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc 545 (743)
T COG5369 485 -KDDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTC 545 (743)
T ss_pred -chhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhccc
Confidence 67789999999999888777543 2333333447888999999999999999999998864
No 304
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=76.69 E-value=1.5e+02 Score=34.02 Aligned_cols=74 Identities=15% Similarity=0.285 Sum_probs=51.1
Q ss_pred CCchhhHHHHHHhhc-CCChhHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHh
Q 001487 139 NGWPELLPFMFQCVS-SDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQC 215 (1069)
Q Consensus 139 ~~w~~ll~~l~~~~~-~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~ 215 (1069)
..+|+++..+.+.+. +.++...++.+..+...++-++-.+- +...++..+.+.+.+ .++.|..+++||..++..
T Consensus 188 ~EF~qIF~lc~qiLE~~~~~SLi~ATLesllrfl~wiPl~yI-feTnIieLv~~~f~s--~pd~r~~tl~CLtEi~~L 262 (1053)
T COG5101 188 IEFPQIFGLCKQILEYSRDESLIEATLESLLRFLEWIPLDYI-FETNIIELVLEHFNS--MPDTRVATLSCLTEIVDL 262 (1053)
T ss_pred hhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhCchhHH-HHHHHHHHHHHHhcc--CCchhHHHHHHHHHHHhh
Confidence 356777777777664 45667777888888777776654322 345677777766665 567888899999887754
No 305
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=76.00 E-value=2e+02 Score=35.29 Aligned_cols=138 Identities=16% Similarity=0.150 Sum_probs=75.8
Q ss_pred hHHHHHHHHHHHhhhhhhhh---cc--hhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhCCcchHhHHHhhHHHH
Q 001487 158 KLQESAFLIFAQLSQYIGDT---LT--PHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLM 232 (1069)
Q Consensus 158 ~~r~~al~~l~~l~~~~~~~---~~--~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~ 232 (1069)
...+.++.+|..+....++. |. ...-..++.+...+....++.++..+++.+..+..+.+. .+.+..- ..
T Consensus 1740 ~~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~C---v~~~a~~--~v 1814 (2235)
T KOG1789|consen 1740 TKVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKEC---VTDLATC--NV 1814 (2235)
T ss_pred HHHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHH---HHHHHhh--hH
Confidence 35678899999998876532 11 122334556666666555778999999988776655321 1111111 23
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHccccHHHHHhHHH-HHHHHHHHhcCCCcchHHHHHHHHHHHHHHH
Q 001487 233 MRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVD-VVGSMLQIAEAESLEEGTRHLAIEFVITLAE 303 (1069)
Q Consensus 233 l~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~-l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~ 303 (1069)
+..|.+.+.+ .|+.|..++..+-.+..+ ++....-+.. -+..++.++-+ ......|.++.+++..+..
T Consensus 1815 L~~LL~lLHS-~PS~R~~vL~vLYAL~S~-~~i~keA~~hg~l~yil~~~c~-~~~~QqRAqaAeLlaKl~A 1883 (2235)
T KOG1789|consen 1815 LTTLLTLLHS-QPSMRARVLDVLYALSSN-GQIGKEALEHGGLMYILSILCL-TNSDQQRAQAAELLAKLQA 1883 (2235)
T ss_pred HHHHHHHHhc-ChHHHHHHHHHHHHHhcC-cHHHHHHHhcCchhhhhHHHhc-cCcHHHHHHHHHHHHHhhh
Confidence 4445555543 678899999988877653 3322222211 01111111111 2345667777777766544
No 306
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=75.65 E-value=36 Score=29.88 Aligned_cols=73 Identities=15% Similarity=0.126 Sum_probs=52.7
Q ss_pred cchHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHH--HHHHHHh----hC--CCCChhHHHHHHHHHHH
Q 001487 373 TIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQ--VLSMVLN----SF--RDPHPRVRWAAINAIGQ 444 (1069)
Q Consensus 373 ~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~--i~~~l~~----~l--~d~~~~vr~~a~~~l~~ 444 (1069)
.....++..+...+++.+|++..-|+..+..++..+++.+..++.. .+..++. .. .+.+..||..+...+..
T Consensus 33 ~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~ 112 (115)
T cd00197 33 VGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQL 112 (115)
T ss_pred ccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHH
Confidence 4456788888889999999999999999999999998766655432 2222221 11 24578899988877765
Q ss_pred h
Q 001487 445 L 445 (1069)
Q Consensus 445 l 445 (1069)
.
T Consensus 113 w 113 (115)
T cd00197 113 W 113 (115)
T ss_pred H
Confidence 4
No 307
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.85 E-value=1.6e+02 Score=33.47 Aligned_cols=154 Identities=13% Similarity=0.168 Sum_probs=85.7
Q ss_pred CCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHH
Q 001487 429 DPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKL 508 (1069)
Q Consensus 429 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~i~~~l 508 (1069)
...+..-++++.++..+++...+.- ...++.++..+++. .. +. .+|..++..++.+.+-.... ...+..++..+
T Consensus 400 ~~~We~~EAaLF~l~~~~~~~~~~e-~~i~pevl~~i~nl-p~-Q~-~~~~ts~ll~g~~~ew~~~~--p~~le~v~~~~ 473 (559)
T KOG2081|consen 400 NASWEEVEAALFILRAVAKNVSPEE-NTIMPEVLKLICNL-PE-QA-PLRYTSILLLGEYSEWVEQH--PELLEPVLRYI 473 (559)
T ss_pred CCchHHHHHHHHHHHHHhccCCccc-cchHHHHHHHHhCC-cc-ch-hHHHHHHHHHHHHHHHHHhC--cHHHHHHHHHH
Confidence 3467778888888888887776543 33344444443332 22 23 38888888888887755422 12344444555
Q ss_pred HHHhhcCChhHHHHHHHHHHHHHHhhHhhhHhhHhhhhHHHHHHHhhccCccccchhhHHHHHHHHHHHhhChhhhhhhH
Q 001487 509 LVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDA 588 (1069)
Q Consensus 509 ~~~l~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~ 588 (1069)
...++... ....+..++-.++..+.....+.++.+...+........+++.. .....++.+....+..+..+.+
T Consensus 474 ~~~~~~~~--~as~~a~~~~~i~~~c~~~~~~l~~~~~~l~~~l~~~~~~~e~a----~l~~~~s~i~~~lp~~k~~~~~ 547 (559)
T KOG2081|consen 474 RQGLQLKR--LASAAALAFHRICSACRVQMTCLIPSLLELIRSLDSTQINEEAA----CLLQGISLIISNLPAHKAKIAL 547 (559)
T ss_pred HHHhhhcc--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhccHHHH----HHHHHHHHHHhcCCHhhhhHHH
Confidence 55554433 55566667777777777666655555555444443322221111 1344455555556655666655
Q ss_pred HHHHHH
Q 001487 589 KQVMEV 594 (1069)
Q Consensus 589 ~~i~~~ 594 (1069)
+++...
T Consensus 548 ~el~~~ 553 (559)
T KOG2081|consen 548 EELCEP 553 (559)
T ss_pred HHHhhH
Confidence 555443
No 308
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=74.30 E-value=23 Score=31.29 Aligned_cols=76 Identities=14% Similarity=0.195 Sum_probs=53.5
Q ss_pred chHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhHhhhHhhHhhhhHHHHHHHhhcc-------CccccchhhHHHHHH
Q 001487 500 YLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNAT-------DKSNRMLRAKSMECI 572 (1069)
Q Consensus 500 ~l~~i~~~l~~~l~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~-------~~~~~~lr~~a~~~l 572 (1069)
-+..++..|.+-+++.++.|+..++.+|..++...++.|...+..-...+.....-.. +.....+|..|-+++
T Consensus 35 ~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~ 114 (122)
T cd03572 35 SCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELI 114 (122)
T ss_pred HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHH
Confidence 3568889999999999999999999999999999888888776655555544322111 122344666666666
Q ss_pred HHH
Q 001487 573 SLV 575 (1069)
Q Consensus 573 ~~l 575 (1069)
..+
T Consensus 115 ~~i 117 (122)
T cd03572 115 KAI 117 (122)
T ss_pred HHH
Confidence 544
No 309
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=73.74 E-value=1.7e+02 Score=37.58 Aligned_cols=105 Identities=18% Similarity=0.157 Sum_probs=79.1
Q ss_pred HHhhcCCChHHHHHHHHHHHHHHhhcHHHHH-HhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhh
Q 001487 383 PAYLAAPEWQKHHAALIALAQIAEGCAKVMV-KNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQV 461 (1069)
Q Consensus 383 ~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~-~~~~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~i 461 (1069)
.+.+.-.|...|.-|+.-++.+.+....... ..++.......+...|.+..||.+....+..+...++..+ .+|+..+
T Consensus 47 ~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~l-sp~LK~l 125 (1312)
T KOG0803|consen 47 VKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKL-SPFLKSL 125 (1312)
T ss_pred HHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHh-hHHHHhh
Confidence 3444557888899899999888876543222 2244444555667789999999999999999999998887 7999999
Q ss_pred HHHHHhhccCCCChhHHHHHHHHHHHhh
Q 001487 462 LPALAGAMDDFQNPRVQAHAASAVLNFS 489 (1069)
Q Consensus 462 l~~l~~~l~~~~~~~v~~~a~~al~~l~ 489 (1069)
+|..+-..-| ....|..+|...+....
T Consensus 126 i~~wl~~~~d-~~~~vs~aa~~sf~~~f 152 (1312)
T KOG0803|consen 126 IPPWLGGQFD-LDYPVSEAAKASFKDGF 152 (1312)
T ss_pred hhhhhheecc-cchHHHHHHHHHHHhhc
Confidence 9999888888 67777777766655543
No 310
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=73.74 E-value=1.5e+02 Score=32.64 Aligned_cols=231 Identities=14% Similarity=0.159 Sum_probs=109.6
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHHccccHHHHH----hHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHhhh
Q 001487 231 LMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRR----QLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARE 306 (1069)
Q Consensus 231 ~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~----~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~ 306 (1069)
.+.+.+...+-+++.++|..+++++..++.... .+.. +++.++ ...+......+.-|.+|+.++..+.+..+
T Consensus 25 ~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~-~l~~~~~l~id~~i---i~SL~~~~~~~~ER~QALkliR~~l~~~~ 100 (371)
T PF14664_consen 25 FFGERIQCMLLSDSKEVRAAGYRILRYLISDEE-SLQILLKLHIDIFI---IRSLDRDNKNDVEREQALKLIRAFLEIKK 100 (371)
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHH-HHHHHHHcCCchhh---HhhhcccCCChHHHHHHHHHHHHHHHhcC
Confidence 344444433334558999999999988776442 2222 222222 22233222345569999999999998521
Q ss_pred ccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCcchhhHHHHHHHHHHHcCCccch-HHHHHHHHHh
Q 001487 307 RAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIV-PVASEQLPAY 385 (1069)
Q Consensus 307 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~-~~l~~~l~~~ 385 (1069)
++ +.++ ..++..++...... ++..+.++.+++..++-.-| +-+. -.-+..+.+.
T Consensus 101 -~~---~~~~---~~vvralvaiae~~-----------------~D~lr~~cletL~El~l~~P-~lv~~~gG~~~L~~~ 155 (371)
T PF14664_consen 101 -GP---KEIP---RGVVRALVAIAEHE-----------------DDRLRRICLETLCELALLNP-ELVAECGGIRVLLRA 155 (371)
T ss_pred -Cc---ccCC---HHHHHHHHHHHhCC-----------------chHHHHHHHHHHHHHHhhCH-HHHHHcCCHHHHHHH
Confidence 11 1222 23333333322111 12234555555555553332 1110 0112223333
Q ss_pred hcCCChHHHHHHHHHHHHHHhhcHH--HHHH--hHHHHHHHHHhh----CCCCCh-hHHHHHHHHHHHhHhhhchhHHhh
Q 001487 386 LAAPEWQKHHAALIALAQIAEGCAK--VMVK--NLEQVLSMVLNS----FRDPHP-RVRWAAINAIGQLSTDLGPDLQNQ 456 (1069)
Q Consensus 386 l~~~~~~~r~aal~~l~~l~~~~~~--~~~~--~~~~i~~~l~~~----l~d~~~-~vr~~a~~~l~~l~~~~~~~~~~~ 456 (1069)
+.++....-++.+.++-.+.+.... .+.. .++.++..+... ..+... ..-..+..++..+.+.-++-+.-.
T Consensus 156 l~d~~~~~~~~l~~~lL~lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~ 235 (371)
T PF14664_consen 156 LIDGSFSISESLLDTLLYLLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLS 235 (371)
T ss_pred HHhccHhHHHHHHHHHHHHhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeee
Confidence 3333333444445555444443321 1111 233333333322 222221 122344555555554433322111
Q ss_pred hhh-hhHHHHHhhccCCCChhHHHHHHHHHHHhhhc
Q 001487 457 FHP-QVLPALAGAMDDFQNPRVQAHAASAVLNFSEN 491 (1069)
Q Consensus 457 ~~~-~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~ 491 (1069)
.-+ .-+..++..|.- +++.+|......+-.++..
T Consensus 236 ~~~~~~lksLv~~L~~-p~~~ir~~Ildll~dllri 270 (371)
T PF14664_consen 236 MNDFRGLKSLVDSLRL-PNPEIRKAILDLLFDLLRI 270 (371)
T ss_pred cCCchHHHHHHHHHcC-CCHHHHHHHHHHHHHHHCC
Confidence 111 567888888888 8888999888877666654
No 311
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=73.73 E-value=25 Score=28.88 Aligned_cols=59 Identities=12% Similarity=0.143 Sum_probs=50.7
Q ss_pred hcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHH
Q 001487 386 LAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQ 444 (1069)
Q Consensus 386 l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~d~~~~vr~~a~~~l~~ 444 (1069)
.++++..+|+-.+.++..+.....+.+..-.+.++..+-....+.+..+...|..++..
T Consensus 27 ~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~~ 85 (86)
T PF09324_consen 27 SNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQL 85 (86)
T ss_pred hccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHhh
Confidence 34578899999999999999999888888888999999888888888888888877653
No 312
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=73.22 E-value=6.3 Score=39.52 Aligned_cols=70 Identities=17% Similarity=0.185 Sum_probs=53.6
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhHhhhch
Q 001487 376 PVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGP 451 (1069)
Q Consensus 376 ~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 451 (1069)
+.+.+.+.++++|++.-.|.+++.++...... ...+.++..+...+.|++..||.+..|+|..++...++
T Consensus 119 ~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~------~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~ 188 (213)
T PF08713_consen 119 PEALELLEKWAKSDNEWVRRAAIVMLLRYIRK------EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKDPD 188 (213)
T ss_dssp GGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG------CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh------cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHH
Confidence 56788888999999877777776655443332 56677888888899999999999999999998876543
No 313
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=72.88 E-value=2.4e+02 Score=34.66 Aligned_cols=123 Identities=16% Similarity=0.052 Sum_probs=73.4
Q ss_pred HHHHHHHHhhCCCCChhHHHHHHHHHHHhHhh---h-chhHHhhhhhhhHHHHHhhccC-CCChhHHHHHHHHHHHhhhc
Q 001487 417 EQVLSMVLNSFRDPHPRVRWAAINAIGQLSTD---L-GPDLQNQFHPQVLPALAGAMDD-FQNPRVQAHAASAVLNFSEN 491 (1069)
Q Consensus 417 ~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~---~-~~~~~~~~~~~il~~l~~~l~~-~~~~~v~~~a~~al~~l~~~ 491 (1069)
+..+|.+...+-++++..|.=|...+..+... + ..++.....+.+...+... +. ..++.....--..+..+++.
T Consensus 119 ~~~lPG~~~~Lf~~~~~~r~WA~~~~~~l~~~~~~~t~~~~~~av~~~l~~~l~~i-~~~~~~~~~~~~fW~g~~~Il~~ 197 (727)
T PF12726_consen 119 KELLPGMTYFLFDGNPERRRWAERWWQRLKRPPYSITDEEFDWAVLDELSSHLYRI-SPNNYNPDSVIRFWSGFSLILRL 197 (727)
T ss_pred ccccchhhhhhhcCCHHHHHHHHHHHHHcCCCccCCchhhhhHHHHHHHHHHHHHh-ccCCCChhHHHHHHHHHHHHHHH
Confidence 55678888888889999998888888887653 1 2222112233333333333 22 12233223333455556666
Q ss_pred CCcccccCchHH-----HHHHHHHHhhcCChhHHHHHHHHHHHHHHhhHhhhHh
Q 001487 492 CTPEILTPYLDG-----IVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQK 540 (1069)
Q Consensus 492 ~~~~~~~~~l~~-----i~~~l~~~l~~~~~~v~~~al~~l~~l~~~~~~~~~~ 540 (1069)
++.+.+..++.. ++..++.-+...........+.++..+.+..+.+|-.
T Consensus 198 ld~~~i~~~l~~~~~~~i~~L~~~hL~~~~~~~l~~lL~~l~~lL~k~~~~FW~ 251 (727)
T PF12726_consen 198 LDKEQITHSLRALELDPIYRLLLNHLSSNLSPPLPILLRCLSILLEKLGSDFWD 251 (727)
T ss_pred ccHHHHHHHHhccccchHHHHHHHHhhcccchhHHHHHHHHHHHHHhCHHHHhc
Confidence 655544444433 5566666666664555678899999999999987754
No 314
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.88 E-value=31 Score=35.52 Aligned_cols=104 Identities=19% Similarity=0.194 Sum_probs=68.6
Q ss_pred HHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhh
Q 001487 382 LPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQV 461 (1069)
Q Consensus 382 l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~i 461 (1069)
+..++.++++.+|.+|+..+-.+.......+..+-...++.+.+.+.+..+ -.-|+.++..++... ...+..+..+
T Consensus 8 lv~ll~~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~--~l~~~ll~~~ 83 (353)
T KOG2973|consen 8 LVELLHSLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKE--ELRKKLLQDL 83 (353)
T ss_pred HHHHhccCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhH--HHHHHHHHHH
Confidence 456778899999999987776665543344555556678888888988887 344566777776543 2222334446
Q ss_pred HHHHHhhccCCCChhHHHHHHHHHHHhhh
Q 001487 462 LPALAGAMDDFQNPRVQAHAASAVLNFSE 490 (1069)
Q Consensus 462 l~~l~~~l~~~~~~~v~~~a~~al~~l~~ 490 (1069)
+..++..+.+ +.+......|..+.++..
T Consensus 84 ~k~l~~~~~~-p~~~lad~~cmlL~NLs~ 111 (353)
T KOG2973|consen 84 LKVLMDMLTD-PQSPLADLICMLLSNLSR 111 (353)
T ss_pred HHHHHHHhcC-cccchHHHHHHHHHHhcc
Confidence 6667777777 555555666666666543
No 315
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=72.31 E-value=99 Score=33.70 Aligned_cols=67 Identities=21% Similarity=0.326 Sum_probs=48.8
Q ss_pred CCCHHHHHHHHHHHHHHHhHhhhhhhhhh-HhHHHHHHhhccCCChhHHHhhhHHHHHHHhhcCCCch
Q 001487 893 DKTAEERRIAICIFDDVAEQCREAALKYY-ETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVK 959 (1069)
Q Consensus 893 ~~~~~~r~~a~~~l~~l~~~~~~~~~~~~-~~l~~~ll~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~ 959 (1069)
....+.....+++++.++++..+-....+ ...+..++-.++..+|.+-+.++.+||.++.+++...+
T Consensus 233 ~e~~e~aR~~~~il~~mFKHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~q 300 (832)
T KOG3678|consen 233 REPVELARSVAGILEHMFKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQ 300 (832)
T ss_pred cCcHHHHHHHHHHHHHHhhhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHH
Confidence 34555566678899999988766543333 34455666667778899999999999999999886543
No 316
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.02 E-value=1.3e+02 Score=31.48 Aligned_cols=308 Identities=14% Similarity=0.139 Sum_probs=158.5
Q ss_pred hcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhHhhhchhHH-hhh-hhhhHH
Q 001487 386 LAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQ-NQF-HPQVLP 463 (1069)
Q Consensus 386 l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~-~~~-~~~il~ 463 (1069)
-.+++...-.-++.++..+..+.++.+.-.-..++-.++. ++.++..+-...+.++..-|.. .+.. ..+ --.+++
T Consensus 116 a~~~~~~~l~ksL~al~~lt~~qpdl~da~g~~vvv~lL~-~~~~~~dlt~~~~~~v~~Ac~~--hE~nrQ~~m~~~il~ 192 (461)
T KOG4199|consen 116 AESPNESVLKKSLEAINSLTHKQPDLFDAEAMAVVLKLLA-LKVESEEVTLLTLQWLQKACIM--HEVNRQLFMELKILE 192 (461)
T ss_pred hhCCchhHHHHHHHHHHHhhcCCcchhccccHHHHHHHHh-cccchHHHHHHHHHHHHHHHHH--hHHHHHHHHHhhHHH
Confidence 4566666667778888888877776554443333322222 1223334444444444433321 1110 112 235677
Q ss_pred HHHhhccCCCChhHHHHHHHHHHHhhhcCCc----ccccCchHH-----HHHHHHHHhhcC-ChhHHHHHHHHHHHHHHh
Q 001487 464 ALAGAMDDFQNPRVQAHAASAVLNFSENCTP----EILTPYLDG-----IVSKLLVLLQNG-KQMVQEGALTALASVADS 533 (1069)
Q Consensus 464 ~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~----~~~~~~l~~-----i~~~l~~~l~~~-~~~v~~~al~~l~~l~~~ 533 (1069)
.+...+..+...++-..+++++..+...-+- .....|... ++..|...++.. ++.+...+..+++.++-.
T Consensus 193 Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr 272 (461)
T KOG4199|consen 193 LILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVR 272 (461)
T ss_pred HHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHH
Confidence 7776776534455667888998877642110 001122222 233444444332 356666777777777643
Q ss_pred hHhhhHhhHh--hhhHHHHHHHhhccCccccchhhHHHHHHHHHHHhhChhhhhhh------HHHHHHHHHHHhcCCCCC
Q 001487 534 SQEHFQKYYD--AVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDD------AKQVMEVLMSLQGSQMET 605 (1069)
Q Consensus 534 ~~~~~~~~~~--~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~------~~~i~~~l~~l~~~~~~~ 605 (1069)
- .|=.-.. .=+..++..+.+.++.+ .|.-+=+|++.+..-.|.+..... ++.++.+++.-. +
T Consensus 273 ~--E~C~~I~e~GGl~tl~~~i~d~n~~~---~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~-----~ 342 (461)
T KOG4199|consen 273 D--EICKSIAESGGLDTLLRCIDDSNEQG---NRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHS-----D 342 (461)
T ss_pred H--HHHHHHHHccCHHHHHHHHhhhchhh---HHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcC-----C
Confidence 1 1111111 12344555554433333 444455566666555565444333 345555555421 2
Q ss_pred CCchhhHHHHHHHHHHHHhcCCcccchhh-hhHHHHHhcccCCCccccCCCCccccccCCCcccchhhcCCceeeeccch
Q 001487 606 DDPTTSYMLQAWARLCKCLGQDFLPYMSV-VMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSV 684 (1069)
Q Consensus 606 ~~~~~~~~~~~~~~l~~~~~~~~~~~l~~-i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 684 (1069)
+..+.+.++.++..++-..++.-..+++. .-...++.++-.|. .
T Consensus 343 ~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~-----------------------------------~ 387 (461)
T KOG4199|consen 343 DPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPV-----------------------------------A 387 (461)
T ss_pred ChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcH-----------------------------------H
Confidence 23366666767777776655554444331 22333444432221 1
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHhhccCCcCChHHHHHHHHhHHHHHH
Q 001487 685 LEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLR 742 (1069)
Q Consensus 685 ~~~k~~a~~~l~~l~~~~~~~~~p~~~~~~~~l~~~l~~~~~~~ir~~a~~~l~~l~~ 742 (1069)
...+..|+.++..++......-.|++..=++.++..-... |+..+.++-.+|..|..
T Consensus 388 a~vQrnac~~IRNiv~rs~~~~~~~l~~GiE~Li~~A~~~-h~tce~~akaALRDLGc 444 (461)
T KOG4199|consen 388 AQVQRNACNMIRNIVVRSAENRTILLANGIEKLIRTAKAN-HETCEAAAKAALRDLGC 444 (461)
T ss_pred HHHHHHHHHHHHHHHHhhhhccchHHhccHHHHHHHHHhc-CccHHHHHHHHHHhcCc
Confidence 2234567778888887766656666655555555554433 88888888888777743
No 317
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=71.72 E-value=1.1e+02 Score=31.52 Aligned_cols=75 Identities=21% Similarity=0.257 Sum_probs=57.8
Q ss_pred hhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhH
Q 001487 456 QFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQ 535 (1069)
Q Consensus 456 ~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~i~~~l~~~l~~~~~~v~~~al~~l~~l~~~~~ 535 (1069)
++..+++..++..|.+ +.+.+|..+...|..++...+.. .|+-.+++..+.+.++++.. ..|++.+..+....|
T Consensus 184 ~~~~~~l~~Ll~lL~n-~~~w~~~~~L~iL~~ll~~~d~~--~~~~~dlispllrlL~t~~~---~eAL~VLd~~v~~s~ 257 (262)
T PF14225_consen 184 DHEFQILTFLLGLLEN-GPPWLRRKTLQILKVLLPHVDMR--SPHGADLISPLLRLLQTDLW---MEALEVLDEIVTRSG 257 (262)
T ss_pred hhHHHHHHHHHHHHhC-CcHHHHHHHHHHHHHHhccccCC--CCcchHHHHHHHHHhCCccH---HHHHHHHHHHHhhcc
Confidence 4556777778888888 77889999999999999887654 46888899999999987654 467777776665554
Q ss_pred h
Q 001487 536 E 536 (1069)
Q Consensus 536 ~ 536 (1069)
.
T Consensus 258 s 258 (262)
T PF14225_consen 258 S 258 (262)
T ss_pred c
Confidence 3
No 318
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=71.03 E-value=20 Score=29.85 Aligned_cols=61 Identities=11% Similarity=0.157 Sum_probs=46.5
Q ss_pred CCChhHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHhhcCC-CChHHHHHHHHHHHHHHH
Q 001487 154 SDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNS-NNPDVKIAALNAVINFIQ 214 (1069)
Q Consensus 154 ~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~-~~~~vr~~a~~~l~~l~~ 214 (1069)
+.++..|+.|..++..++..++.......+.+...+.+.+.|+ .+...+..|+..|..+-.
T Consensus 17 ~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG~ 78 (92)
T PF07571_consen 17 DNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALGP 78 (92)
T ss_pred cchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 3467899999999999999887765555667888888888876 245677788888776643
No 319
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=70.75 E-value=14 Score=30.87 Aligned_cols=59 Identities=20% Similarity=0.285 Sum_probs=45.6
Q ss_pred CCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCC--hhHHHHHHHHHHHhH
Q 001487 388 APEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPH--PRVRWAAINAIGQLS 446 (1069)
Q Consensus 388 ~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~d~~--~~vr~~a~~~l~~l~ 446 (1069)
+.+|..|+-|...++.++...+......-+.+...+.+.+.|++ ...+..|+..|..+.
T Consensus 17 ~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG 77 (92)
T PF07571_consen 17 DNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALG 77 (92)
T ss_pred cchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 45799999999999999987665444455678888888888664 457888888888874
No 320
>KOG2256 consensus Predicted protein involved in nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis]
Probab=70.50 E-value=2.1e+02 Score=33.15 Aligned_cols=180 Identities=12% Similarity=0.152 Sum_probs=89.2
Q ss_pred hhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCC-------hhHHHHHHHHHHHH
Q 001487 458 HPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGK-------QMVQEGALTALASV 530 (1069)
Q Consensus 458 ~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~i~~~l~~~l~~~~-------~~v~~~al~~l~~l 530 (1069)
...++..++..-.. .+..+|..|.-++..++....+..+.+.+....-.++.-..-.+ ...+..+.+.++.=
T Consensus 280 lk~liK~~V~vWst-ge~~~rv~Afl~l~~l~~~~~~~~l~~vlk~mY~afv~nsk~~~~~tl~~i~Fl~~slvEL~~ld 358 (661)
T KOG2256|consen 280 LKKLIKAVVHVWST-GEESLRVLAFLCLIDLCRKFKSTCLDPVLKTMYLAFVRNSKFVTVNTLPLINFLQNSLVELLGLD 358 (661)
T ss_pred HHHHHHHHheeecc-CCcchhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCCCCCcccchhHHHHHHHHHHhccC
Confidence 34444444444444 56778888888888887776655444444433333332211111 11222222222211
Q ss_pred HHhhHhhhHhhHhhhhHHHHHHHhhccCccccch-hh---HHHHHHHHHHH-hh-ChhhhhhhHHHHHHHHHHHhc-CCC
Q 001487 531 ADSSQEHFQKYYDAVMPFLKAILVNATDKSNRML-RA---KSMECISLVGM-AV-GKDKFRDDAKQVMEVLMSLQG-SQM 603 (1069)
Q Consensus 531 ~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~l-r~---~a~~~l~~l~~-~~-~~~~~~~~~~~i~~~l~~l~~-~~~ 603 (1069)
....-..---|+.++--.|.+.+.....++...+ -. .+++.+..+.. +. +...+.|.+.+++++.+.+.. ...
T Consensus 359 ~~~~Yq~aF~yIrQLAihLRnam~~k~K~s~~~VYnWqfi~cL~lW~rvisf~~~~~s~lq~LvYpLvQvi~GvirLipT 438 (661)
T KOG2256|consen 359 LQVSYQHAFVYIRQLAIHLRNAMITKNKESVQSVYNWQYVHCLDLWLRVISFANGSASQLQPLVYPLVQVILGVIRLIPT 438 (661)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccHhhhhhhhhHHHHHHHHHhhhcCc
Confidence 1111111123566666666666655332221111 11 12333333332 33 245677888888887776322 111
Q ss_pred CCCCchhhHHHHHHHHHHHHhcCCcccchhhhhHHH
Q 001487 604 ETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPL 639 (1069)
Q Consensus 604 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~l 639 (1069)
...-|+|-.++..+..++...|. |.|..|.++..+
T Consensus 439 ~qy~PLRlhcir~Li~Ls~ssg~-fIPi~~ll~Eml 473 (661)
T KOG2256|consen 439 PQYYPLRLHCIRSLISLSRSSGT-FIPLSPLLVEML 473 (661)
T ss_pred ccchhHHHHHHHHHHHHHhhcCc-eeecHHHHHHHH
Confidence 22346899999999999888764 566555544433
No 321
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=69.35 E-value=1.4e+02 Score=30.49 Aligned_cols=126 Identities=14% Similarity=0.282 Sum_probs=75.0
Q ss_pred hcCCCChHHHHHHHHHHHHHHHh----hCCcchHhHHHhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHccc------
Q 001487 193 LTNSNNPDVKIAALNAVINFIQC----LTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTE------ 262 (1069)
Q Consensus 193 l~~~~~~~vr~~a~~~l~~l~~~----~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~~~------ 262 (1069)
++++ ++.|.+.++.+...+... +......+..-..+..+=..+...+.+.++.++..++..+..++-..
T Consensus 2 l~d~-d~~v~K~~I~~~~~iy~~~~~~i~~~~~~~~~W~~~~~lK~~Il~~~~~~~~gvk~~~iKFle~vIl~qs~~~~~ 80 (239)
T PF11935_consen 2 LNDE-DPAVVKRAIQCSTSIYPLVFRWICVNPSDEQLWESMNELKDRILSLWDSENPGVKLAAIKFLERVILVQSPGSSD 80 (239)
T ss_dssp CT-S-SHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHGGGSSSHHHHHHHHHHHHHHHHHTS---TT
T ss_pred CCCC-cHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCCC
Confidence 4565 889999998888877654 31111111122223333344555566778889988888776655211
Q ss_pred ------------------------cHHHHHhHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhh
Q 001487 263 ------------------------PRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQF 318 (1069)
Q Consensus 263 ------------------------~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~ 318 (1069)
+..+...-..+++.++..+.....+...-..++..|..+++. . +.|
T Consensus 81 ~~~~~~~~~d~SL~~vp~~Hp~l~~~~Le~Ea~~lL~~Ll~~l~~~~i~~~~~~a~insL~~Iak~---R-------P~~ 150 (239)
T PF11935_consen 81 SPPRRGSPNDFSLSSVPPNHPLLNPQQLEAEANGLLDRLLDVLQSPHISSPLLTAIINSLSNIAKQ---R-------PQF 150 (239)
T ss_dssp S---GGGTTS--GGGS-TT-SSS-HHHHHHHHHHHHHHHHHHHC-TT--HHHHHHHHHHHHHHHHH---S-------GGG
T ss_pred CccccccccCCCHHHcCCCCCcCCHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHH---h-------hHH
Confidence 012334445678888887765544556666777888888872 3 357
Q ss_pred HHHHHHHHHHh
Q 001487 319 INRLFAILMSM 329 (1069)
Q Consensus 319 ~~~l~~~l~~~ 329 (1069)
...+++.+..+
T Consensus 151 ~~~Il~~ll~~ 161 (239)
T PF11935_consen 151 MSRILPALLSF 161 (239)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 78888888775
No 322
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=69.29 E-value=79 Score=34.07 Aligned_cols=246 Identities=15% Similarity=0.210 Sum_probs=115.8
Q ss_pred HHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHccCCCHHHHHHHHHHHHhhcccCCCCcccCCCHHHHHHHHHH
Q 001487 28 ISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSM 107 (1069)
Q Consensus 28 l~~~~s~d~~~r~~A~~~L~~~~~~~p~~~~~~L~~il~~~~~~~~R~~a~i~L~~~i~~~~~~~w~~l~~~~~~~i~~~ 107 (1069)
|..+.|||-+. +-|.+++. ..|+.-|+.++. +.+|.-|..--.+|.++..+. ...-+-.+..+-+.
T Consensus 157 Lrf~~sp~~d~-~vaK~yid-------~~FvlkLLdLFd-SEDpRERe~LKT~LhrIygKf-----l~~r~firk~iNNi 222 (457)
T KOG2085|consen 157 LRFLESPDFDP-SVAKKYID-------QKFVLKLLDLFD-SEDPREREFLKTILHRIYGKF-----LVHRPFIRKSINNI 222 (457)
T ss_pred HHHHhCcccCH-HHHHHHhh-------HHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHH-----hhhHHHHHHhhcch
Confidence 44566666332 33333332 135566777664 678999999999999888763 22222233333333
Q ss_pred HHHHHhhcchhhHHHHHHHHHHHHHhcccCCC-Cc-hh----hHHHHHHhhcCCC--hhHHHHHHHHHHHhhhhhhhhcc
Q 001487 108 LLQSIQLESAKSISKKLCDTVSELASNILPEN-GW-PE----LLPFMFQCVSSDS--VKLQESAFLIFAQLSQYIGDTLT 179 (1069)
Q Consensus 108 ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~~~-~w-~~----ll~~l~~~~~~~~--~~~r~~al~~l~~l~~~~~~~~~ 179 (1069)
+++.+-. +.+ .+.+++.++.+.+...+.. .. .+ +...|+.+-+-.. -...+ --.++..+++. -.
T Consensus 223 f~~FIyE-te~--hnGIaELLEIlgSiIngfAlPlKEEhkiFL~rvLipLhk~k~l~~yh~Q-LaYcivQfveK----d~ 294 (457)
T KOG2085|consen 223 FLRFIYE-TER--HNGIAELLEILGSIINGFALPLKEEHKLFLVRVLIPLHKPKSLSLYHKQ-LAYCIVQFVEK----DP 294 (457)
T ss_pred hhhhccc-ccc--cCCHHHHHHHHHHhcCcccCcchhHHHHHHHHhhhccccCCCccccccc-cceeeeeeecc----Cc
Confidence 4443332 222 1233444444433321100 01 11 1122222111100 00000 00111111111 11
Q ss_pred hhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhCCcchHhHHHhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHH
Q 001487 180 PHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELA 259 (1069)
Q Consensus 180 ~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~l~~l~ 259 (1069)
...+.++..+++..-.. ...-+..-+.-+..+.+.+ ....|..++..+...+..++.++...+...|+..|..=
T Consensus 295 kl~~~VIrglLK~WP~t-nS~KEVmFL~ElEEILe~i----ep~eFqk~~~PLf~qia~c~sS~HFQVAEraL~~wnNe- 368 (457)
T KOG2085|consen 295 KLTETVIRGLLKYWPKT-NSSKEVMFLNELEEILEVI----EPSEFQKIMVPLFRQIARCVSSPHFQVAERALYLWNNE- 368 (457)
T ss_pred cccHHHHHHHHHhcCCC-CCcceeeeHhhHHHHHHhc----CHHHHHHHhHHHHHHHHHHcCChhHHHHHHHHHHHhhH-
Confidence 13455555666554443 3333344555666666665 45678888888888889999988888988887777521
Q ss_pred ccccHHHHHh----HHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHH
Q 001487 260 GTEPRFLRRQ----LVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAE 303 (1069)
Q Consensus 260 ~~~~~~~~~~----~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~ 303 (1069)
.....+..+ ++.+++.+.+... .+.+..+...++..+..+.+
T Consensus 369 -~i~~Li~~n~~~ilPiiFpaLyr~sk-~hWN~~i~~l~~nvlk~f~e 414 (457)
T KOG2085|consen 369 -YIRSLISQNAEVILPIVFPALYRNSK-SHWNQAIHNLILNVLKTFME 414 (457)
T ss_pred -HHHHHHHhccceeeehhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 001122222 2333444443322 23445555555555555554
No 323
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=68.84 E-value=31 Score=32.35 Aligned_cols=130 Identities=17% Similarity=0.126 Sum_probs=79.8
Q ss_pred hhhHHHHHHHHHHHcCCccchHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhH--HHHHHHHHhhCC--CC
Q 001487 355 YSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNL--EQVLSMVLNSFR--DP 430 (1069)
Q Consensus 355 ~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~--~~i~~~l~~~l~--d~ 430 (1069)
+..+.-++..+....+ +.+...+..++...+...+......++.++..+..+.++.....+ +.+++.+..... ..
T Consensus 22 r~~a~v~l~k~l~~~~-~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~~~~ 100 (157)
T PF11701_consen 22 RSHALVILSKLLDAAR-EEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASRKSK 100 (157)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-CTS
T ss_pred HHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhcccC
Confidence 4444445544433333 455666777777777665555677788888888887777554432 345566666665 67
Q ss_pred ChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChh-HHHHHHHHHHH
Q 001487 431 HPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPR-VQAHAASAVLN 487 (1069)
Q Consensus 431 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~-v~~~a~~al~~ 487 (1069)
+..+..+++.++..-|.. .....-.....++.|-+.++..++.. +|..|.-.|..
T Consensus 101 ~~~~~~~~lell~aAc~d--~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 101 DRKVQKAALELLSAACID--KSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp -HHHHHHHHHHHHHHTTS--HHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcc--HHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 788888999988775532 22223346677777777775424455 67766665543
No 324
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=67.92 E-value=7.3 Score=26.23 Aligned_cols=28 Identities=21% Similarity=0.195 Sum_probs=23.8
Q ss_pred HHHHHHhhCCCCChhHHHHHHHHHHHhH
Q 001487 419 VLSMVLNSFRDPHPRVRWAAINAIGQLS 446 (1069)
Q Consensus 419 i~~~l~~~l~d~~~~vr~~a~~~l~~l~ 446 (1069)
.++.+++.+++.++.++..++++|..++
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 5667777788889999999999999875
No 325
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=66.52 E-value=90 Score=29.11 Aligned_cols=97 Identities=9% Similarity=0.034 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHhhhchhhhHHH-HHhhhhhhhcCCC-CHHHHHHHHHHHHHHHhHhhhhhhh-hhHhHHHHHHhhccCCC
Q 001487 860 VGEILGTLIKTFKAAFLPFFDE-LSSYLTPMWGKDK-TAEERRIAICIFDDVAEQCREAALK-YYETYLPFLLEACNDEN 936 (1069)
Q Consensus 860 ~~~~l~~l~~~~~~~~~~~~~~-l~~~l~~~l~~~~-~~~~r~~a~~~l~~l~~~~~~~~~~-~~~~l~~~ll~~l~~~~ 936 (1069)
+..++..|..+ |-.-|..+.. ++..+..+.+... +.+.-+.|++.+..++.+.+..... .-+--++.++.+++..+
T Consensus 37 ~L~af~eLMeH-g~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~ 115 (160)
T PF11841_consen 37 ALTAFVELMEH-GIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILESIVLNSPKLYQLVEQEVTLESLIRHLQVSN 115 (160)
T ss_pred HHHHHHHHHhc-CcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCC
Confidence 34444444443 3223333332 5555555554333 4667788999999998775543222 11333578899999999
Q ss_pred hhHHHhhhHHHHHHHhhcCCC
Q 001487 937 QDVRQAAVYGLGVCAEFGGSV 957 (1069)
Q Consensus 937 ~~vr~~a~~~lg~l~~~~~~~ 957 (1069)
+.+..+|...+..+....++.
T Consensus 116 ~~iq~naiaLinAL~~kA~~~ 136 (160)
T PF11841_consen 116 QEIQTNAIALINALFLKADDS 136 (160)
T ss_pred HHHHHHHHHHHHHHHhcCChH
Confidence 999999999999999988753
No 326
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=66.04 E-value=1.1e+02 Score=28.10 Aligned_cols=94 Identities=15% Similarity=0.080 Sum_probs=61.8
Q ss_pred chHHHHHHHHHHhh-cCChhHHHHHHHHHHHHHHhhHhhhHhhH--hhhhHH-HHHHHhhccCccccchhhHHHHHHHHH
Q 001487 500 YLDGIVSKLLVLLQ-NGKQMVQEGALTALASVADSSQEHFQKYY--DAVMPF-LKAILVNATDKSNRMLRAKSMECISLV 575 (1069)
Q Consensus 500 ~l~~i~~~l~~~l~-~~~~~v~~~al~~l~~l~~~~~~~~~~~~--~~i~~~-l~~~l~~~~~~~~~~lr~~a~~~l~~l 575 (1069)
.-...+..+.+-++ +.++.+...|+..+..++..+|..|...+ ..++.- |..++....+ ....++.++++.+...
T Consensus 35 ~~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~-~~~~Vk~kil~li~~W 113 (141)
T cd03565 35 GPKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNN-PPTIVQEKVLALIQAW 113 (141)
T ss_pred cHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCC-CcHHHHHHHHHHHHHH
Confidence 34566788888776 45788888999999999999998876433 245554 5555542211 2345788889999988
Q ss_pred HHhhChhhhhhhHHHHHHH
Q 001487 576 GMAVGKDKFRDDAKQVMEV 594 (1069)
Q Consensus 576 ~~~~~~~~~~~~~~~i~~~ 594 (1069)
+.+++.+.=.+++.+..+.
T Consensus 114 ~~~f~~~~~l~~i~~~y~~ 132 (141)
T cd03565 114 ADAFRGSPDLTGVVEVYEE 132 (141)
T ss_pred HHHhCCCccchHHHHHHHH
Confidence 8877633222334444433
No 327
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=66.01 E-value=12 Score=25.63 Aligned_cols=40 Identities=18% Similarity=0.323 Sum_probs=27.7
Q ss_pred HHHhhhhhhhhcchhHHHHHHHHHHhhcCCCChHHHHHHHHHH
Q 001487 167 FAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAV 209 (1069)
Q Consensus 167 l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l 209 (1069)
++.+.+..+.-+ ..+.+...+...+.|+ ++.||.+|+..+
T Consensus 3 l~~iv~~dp~ll--~~~~v~~~i~~rl~D~-s~~VR~aav~ll 42 (42)
T PF12765_consen 3 LSSIVEKDPTLL--DSSDVQSAIIRRLSDS-SPSVREAAVDLL 42 (42)
T ss_pred HHHHHhcCcccc--chHHHHHHHHHHhcCC-ChHHHHHHHHHC
Confidence 444444433322 2457788888999998 999999998753
No 328
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=65.91 E-value=23 Score=34.83 Aligned_cols=67 Identities=13% Similarity=0.127 Sum_probs=50.9
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhHhhhch
Q 001487 380 EQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGP 451 (1069)
Q Consensus 380 ~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 451 (1069)
+.+..+..+++.-.|.+++..+...... ..+.+.++..+-..+.|++..||.+..|+|..++...+.
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~~ 174 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKK-----ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKDPE 174 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHh-----cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCHH
Confidence 6777888888866666666555443322 246778888888899999999999999999999877443
No 329
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.83 E-value=3e+02 Score=35.83 Aligned_cols=233 Identities=10% Similarity=0.139 Sum_probs=115.5
Q ss_pred cCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhHhhhchhHHh---hhhhhhHH
Q 001487 387 AAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQN---QFHPQVLP 463 (1069)
Q Consensus 387 ~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~---~~~~~il~ 463 (1069)
.+.+.++|+..+.++.. .+..-...++..+-..-.+.+..+...+...++.+.......... ..+...++
T Consensus 1047 ~s~s~~Irelv~rC~~~-------nikSGWk~if~i~~~aA~~~~~~iv~~~fe~v~~i~~~~f~~~~~~~~~sf~d~v~ 1119 (1514)
T KOG0929|consen 1047 RSSSAEIRELVVRCISS-------NIKSGWKNIFKIFTTAASDSSKNIVELAFETVSKILQELFENVFPQEMDSFKDCVK 1119 (1514)
T ss_pred ccCcchhHHHHHhhhhh-------hhhhhhhHHHHHHHHhhccchhhHHHHhHHHHHHHHHHhhhhhchhhhHHHHHHHH
Confidence 35667888887777762 223344566667767777888888888777777444332221111 11223333
Q ss_pred HHHhhccCCCChhHHHHHHHHHHH----hhhc-----CC-------cccccCchHHHHHHHHHHhhcCChhHHHHHHHHH
Q 001487 464 ALAGAMDDFQNPRVQAHAASAVLN----FSEN-----CT-------PEILTPYLDGIVSKLLVLLQNGKQMVQEGALTAL 527 (1069)
Q Consensus 464 ~l~~~l~~~~~~~v~~~a~~al~~----l~~~-----~~-------~~~~~~~l~~i~~~l~~~l~~~~~~v~~~al~~l 527 (1069)
.+.....+...+.....+...+.. +.+. .. .....-|++.+ -.+-....+....+|..++..+
T Consensus 1120 cl~~F~~~~~~~~~s~~aI~~lr~ca~k~~e~~~~~~~~~~~~~~~~~~~~~wfP~l-~~ls~i~~~~~~~vr~~al~vl 1198 (1514)
T KOG0929|consen 1120 CLEEFTKNLGFPDDSLNAIRFLRLCALKLAEGVYNEKLKVGKDSEFDVWNSGWFPML-FQLSKIINDYRLEVRKRALEVL 1198 (1514)
T ss_pred HHHHHHHhcCCCccchHHHHHHHHHHHHhccccchhhcccccccccccceeeeehhH-hhhhHHhhccHHHHHHHHHHHH
Confidence 333222211112221222221111 1111 11 11122344433 3333344467789999999999
Q ss_pred HHHHHhhHhhhHh-hHhhhhHHHHHHHhhccCccccc-----hhhHHHHHHHHHHHhhC--hhhhhhhHHHHHHHHHHHh
Q 001487 528 ASVADSSQEHFQK-YYDAVMPFLKAILVNATDKSNRM-----LRAKSMECISLVGMAVG--KDKFRDDAKQVMEVLMSLQ 599 (1069)
Q Consensus 528 ~~l~~~~~~~~~~-~~~~i~~~l~~~l~~~~~~~~~~-----lr~~a~~~l~~l~~~~~--~~~~~~~~~~i~~~l~~l~ 599 (1069)
-.+....|++|.+ +...+...++.++..-..+.... +...+..++..+..-.. -+.+.+.++.++..+....
T Consensus 1199 F~il~~~g~~F~~~~We~v~~~~fpIF~~~~~~~~~~~~~eW~~tT~~~Al~~~v~lf~~~~~~l~~lL~~~~~ll~~ci 1278 (1514)
T KOG0929|consen 1199 FDILKEHGDDFSKEFWEDVFRILFPIFDNVKLDEDESEKDEWLSTTCNHALQALVDLFTQFFKQLNNLLPKVLGLLVGCI 1278 (1514)
T ss_pred HHHHHhhhhhccHHHHHHHHHheeecccccCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999875 55666666666654421111111 11222222222221111 0112233344444444322
Q ss_pred cCCCCCCCchhhHHHHHHHHHHHHhcCCccc
Q 001487 600 GSQMETDDPTTSYMLQAWARLCKCLGQDFLP 630 (1069)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 630 (1069)
. .++..+......||..+....|..|..
T Consensus 1279 ~---~~n~~la~~g~~cl~~l~~~n~~~fse 1306 (1514)
T KOG0929|consen 1279 K---QDNQQLARIGTSCLLQLVSSNGEKFSE 1306 (1514)
T ss_pred c---CcchhhHHhHHHHHHHHHHhcccccCH
Confidence 2 123445566677888888888877664
No 330
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=65.49 E-value=90 Score=27.35 Aligned_cols=74 Identities=12% Similarity=0.190 Sum_probs=50.8
Q ss_pred hHHHHHHHHHhhCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhh-hhHHHHHh----hc-cCCCChhHHHHHHHHHHHh
Q 001487 415 NLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHP-QVLPALAG----AM-DDFQNPRVQAHAASAVLNF 488 (1069)
Q Consensus 415 ~~~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~-~il~~l~~----~l-~~~~~~~v~~~a~~al~~l 488 (1069)
....++..+.+.+.+++|.+...|+..|..+.+.+++.+...... .++..+++ .. ....+..||..+...+...
T Consensus 34 ~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 34 GPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred cHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 455788899999999999999999999999999988776332211 22223322 11 1114678888887776654
No 331
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=64.43 E-value=9.4 Score=25.67 Aligned_cols=28 Identities=29% Similarity=0.421 Sum_probs=24.1
Q ss_pred HHHHHHhhccCCChhHHHhhhHHHHHHH
Q 001487 924 YLPFLLEACNDENQDVRQAAVYGLGVCA 951 (1069)
Q Consensus 924 l~~~ll~~l~~~~~~vr~~a~~~lg~l~ 951 (1069)
.++.+++.+.++++.+++.|+++|+.++
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 5677777788889999999999999875
No 332
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=64.08 E-value=1.3e+02 Score=28.58 Aligned_cols=106 Identities=16% Similarity=0.222 Sum_probs=66.1
Q ss_pred ChHHHHHHHHHHHHHHHhhCCcch----HhHHHhhH-HHHHHHHHHHHhCCChHHHHHHHHHHHHHHccccHHHHHhHHH
Q 001487 198 NPDVKIAALNAVINFIQCLTSSAD----RDRFQDLL-PLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVD 272 (1069)
Q Consensus 198 ~~~vr~~a~~~l~~l~~~~~~~~~----~~~~~~~~-~~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 272 (1069)
+...|..+++.+..+++....... ...+...+ ..+...+.+.+.+.++.+...+++++..+...+...+...+..
T Consensus 35 ~~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~ 114 (168)
T PF12783_consen 35 DERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELEV 114 (168)
T ss_pred hHHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777777765321100 01122211 2334444444444568888889999999988877777777777
Q ss_pred HHHHHHH-HhcCCCcchHHHHHHHHHHHHHHH
Q 001487 273 VVGSMLQ-IAEAESLEEGTRHLAIEFVITLAE 303 (1069)
Q Consensus 273 l~~~l~~-~~~~~~~~~~~r~~a~~~l~~l~~ 303 (1069)
++..++. ++..+...-..|..+++++..+++
T Consensus 115 ~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~ 146 (168)
T PF12783_consen 115 FLSHIILRILESDNSSLWQKELALEILRELCK 146 (168)
T ss_pred HHHHHHHHHHccCCCcHHHHHHHHHHHHHHHh
Confidence 7777666 444332234578889999999988
No 333
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=63.95 E-value=20 Score=28.27 Aligned_cols=55 Identities=18% Similarity=0.280 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHhHH--HHHHHHHhhCC-CCChhHHHHHHHHHHHhHhhh
Q 001487 393 KHHAALIALAQIAEGCAKVMVKNLE--QVLSMVLNSFR-DPHPRVRWAAINAIGQLSTDL 449 (1069)
Q Consensus 393 ~r~aal~~l~~l~~~~~~~~~~~~~--~i~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~ 449 (1069)
.+.+++.++|.++..... + ++++ .+++.+++... .+...+|..|+.+|+.++...
T Consensus 3 ~lKaaLWaighIgss~~G-~-~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~ 60 (73)
T PF14668_consen 3 ELKAALWAIGHIGSSPLG-I-QLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTE 60 (73)
T ss_pred HHHHHHHHHHhHhcChHH-H-HHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCH
Confidence 467899999999764332 1 1222 57777776654 678899999999999998653
No 334
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=63.87 E-value=3.5e+02 Score=33.20 Aligned_cols=150 Identities=13% Similarity=0.131 Sum_probs=80.9
Q ss_pred HHHHHHHHHcc----CCCHHHHHHHHHHHHhhcccCCCCcccCCCHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHH
Q 001487 57 LTLKLAHLLQR----SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELA 132 (1069)
Q Consensus 57 ~~~~L~~il~~----~~~~~~R~~a~i~L~~~i~~~~~~~w~~l~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~i~ 132 (1069)
....+.++|.. ..++.+|..=-..++....+.. +. +. ..+..-+...+.+ .++..|.-+...+..+.
T Consensus 78 ~~~aiyE~L~~p~lLr~~~~l~~~F~~~f~~~~~~~~---~~-~~----~~~lPG~~~~Lf~-~~~~~r~WA~~~~~~l~ 148 (727)
T PF12726_consen 78 LLLAIYECLCNPALLRDDEELRELFDAIFSSLQSKKP---LK-LP----KELLPGMTYFLFD-GNPERRRWAERWWQRLK 148 (727)
T ss_pred HHHHHHHHHhCHHHHcCcHHHHHHHHHHHHHHhccCC---cc-cc----ccccchhhhhhhc-CCHHHHHHHHHHHHHcC
Confidence 45667777775 4456677776677777766541 11 11 2233344555665 58889999999999887
Q ss_pred hcc--cCCCCch-----hhHHHHHHhhcCC--ChhHHHHHHHHHHHhhhhhhhh-cchhHH-----HHHHHHHHhhcCCC
Q 001487 133 SNI--LPENGWP-----ELLPFMFQCVSSD--SVKLQESAFLIFAQLSQYIGDT-LTPHLK-----HLHAVFLNCLTNSN 197 (1069)
Q Consensus 133 ~~~--~~~~~w~-----~ll~~l~~~~~~~--~~~~r~~al~~l~~l~~~~~~~-~~~~~~-----~l~~~l~~~l~~~~ 197 (1069)
+.. +....|. ++...+... +.. ++.....-=..+..+.+.++.+ +..++. .++..+.+.+.+.
T Consensus 149 ~~~~~~t~~~~~~av~~~l~~~l~~i-~~~~~~~~~~~~fW~g~~~Il~~ld~~~i~~~l~~~~~~~i~~L~~~hL~~~- 226 (727)
T PF12726_consen 149 RPPYSITDEEFDWAVLDELSSHLYRI-SPNNYNPDSVIRFWSGFSLILRLLDKEQITHSLRALELDPIYRLLLNHLSSN- 226 (727)
T ss_pred CCccCCchhhhhHHHHHHHHHHHHHh-ccCCCChhHHHHHHHHHHHHHHHccHHHHHHHHhccccchHHHHHHHHhhcc-
Confidence 642 3334443 233333333 211 2221111122333333333222 222222 2677777777775
Q ss_pred ChHHHHHHHHHHHHHHHhhC
Q 001487 198 NPDVKIAALNAVINFIQCLT 217 (1069)
Q Consensus 198 ~~~vr~~a~~~l~~l~~~~~ 217 (1069)
....-...++++..+.+..+
T Consensus 227 ~~~~l~~lL~~l~~lL~k~~ 246 (727)
T PF12726_consen 227 LSPPLPILLRCLSILLEKLG 246 (727)
T ss_pred cchhHHHHHHHHHHHHHhCH
Confidence 35566678888888887754
No 335
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=63.54 E-value=66 Score=30.20 Aligned_cols=73 Identities=15% Similarity=0.213 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhHhhhhhhh----hhHhHHHHHHhhccCCChhHHHhhhHHHHHHH-hhcCCCchHHHHHHHHHHHHhhcC
Q 001487 901 IAICIFDDVAEQCREAALK----YYETYLPFLLEACNDENQDVRQAAVYGLGVCA-EFGGSVVKPLVGEALSRLNVVIRH 975 (1069)
Q Consensus 901 ~a~~~l~~l~~~~~~~~~~----~~~~l~~~ll~~l~~~~~~vr~~a~~~lg~l~-~~~~~~~~~~~~~~l~~L~~~l~~ 975 (1069)
..+..++.++......+.. -.+++...++... .+..+ .|++-+-.|. ...++-+.|++..+++.+.+.|..
T Consensus 20 s~~KiL~~iVs~Va~~v~~~~~~~W~eL~d~Ils~~--~~e~~--kA~~IF~~L~~~l~~efl~~~~~~L~~~~~~~L~~ 95 (174)
T PF04510_consen 20 SDFKILRRIVSHVAYEVFDLQEGGWDELSDCILSLS--ENEPV--KAFHIFICLPMPLYGEFLIPFMENLLPEISKVLLP 95 (174)
T ss_pred hHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhh--ccchH--HHHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCC
Confidence 3444555555444443332 2233333333322 22223 3666666666 556677889999999999999988
Q ss_pred CC
Q 001487 976 PN 977 (1069)
Q Consensus 976 ~~ 977 (1069)
|.
T Consensus 96 p~ 97 (174)
T PF04510_consen 96 PE 97 (174)
T ss_pred ch
Confidence 84
No 336
>KOG2256 consensus Predicted protein involved in nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis]
Probab=63.43 E-value=2.9e+02 Score=32.12 Aligned_cols=35 Identities=14% Similarity=0.297 Sum_probs=25.8
Q ss_pred hHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhh
Q 001487 181 HLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCL 216 (1069)
Q Consensus 181 ~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~ 216 (1069)
....++..+......+ +..+|..|+-++..+....
T Consensus 279 ~lk~liK~~V~vWstg-e~~~rv~Afl~l~~l~~~~ 313 (661)
T KOG2256|consen 279 LLKKLIKAVVHVWSTG-EESLRVLAFLCLIDLCRKF 313 (661)
T ss_pred HHHHHHHHHheeeccC-CcchhhHHHHHHHHHHHHh
Confidence 4555666666666666 8899999999999777654
No 337
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=63.22 E-value=1.8e+02 Score=29.60 Aligned_cols=95 Identities=22% Similarity=0.342 Sum_probs=60.6
Q ss_pred HHHHHHhhCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCC-CChhHHHHHHHHHHHhhhcCCcccc
Q 001487 419 VLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDF-QNPRVQAHAASAVLNFSENCTPEIL 497 (1069)
Q Consensus 419 i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~-~~~~v~~~a~~al~~l~~~~~~~~~ 497 (1069)
-+..+...+.+++...|..++.++|++-. +.-+|.+.+.|.+. .++-||..|..||+.+..
T Consensus 188 aI~al~~~l~~~SalfrhEvAfVfGQl~s-----------~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~------- 249 (289)
T KOG0567|consen 188 AINALIDGLADDSALFRHEVAFVFGQLQS-----------PAAIPSLIKVLLDETEHPMVRHEAAEALGAIAD------- 249 (289)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHhhccc-----------hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC-------
Confidence 45566677888888888888888888642 22344444444331 467788888888877643
Q ss_pred cCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhH
Q 001487 498 TPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQ 535 (1069)
Q Consensus 498 ~~~l~~i~~~l~~~l~~~~~~v~~~al~~l~~l~~~~~ 535 (1069)
+..++.|.+.+.++.+-+++.+..++...-..-+
T Consensus 250 ----e~~~~vL~e~~~D~~~vv~esc~valdm~eyens 283 (289)
T KOG0567|consen 250 ----EDCVEVLKEYLGDEERVVRESCEVALDMLEYENS 283 (289)
T ss_pred ----HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhcc
Confidence 2335666667777777777777666665544333
No 338
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=62.72 E-value=79 Score=28.00 Aligned_cols=93 Identities=15% Similarity=0.216 Sum_probs=63.1
Q ss_pred HHHHHHhHhhhhhhhhhHhHHHHHHhhccCCChhHHHhhhHHHHHHHhhcCCCchHHHHHHHHHHHHhh--cC-CCC--C
Q 001487 905 IFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVI--RH-PNA--L 979 (1069)
Q Consensus 905 ~l~~l~~~~~~~~~~~~~~l~~~ll~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~~l~~L~~~l--~~-~~~--~ 979 (1069)
.+.++++..... ..-..+++..+.+.|++.++.|+.-+...|-.++..+++.|..++..-...+.... .. ++. -
T Consensus 21 ~~~Eia~~t~~s-~~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~G 99 (122)
T cd03572 21 LYEEIAKLTRKS-VGSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKG 99 (122)
T ss_pred HHHHHHHHHHcC-HHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccC
Confidence 344555444332 12356788999999999999999999999999999998888777655555444432 22 221 1
Q ss_pred ChhhhhhHHHHHHHHHHHH
Q 001487 980 QPENLMAYDNAVSALGKIC 998 (1069)
Q Consensus 980 ~~~~~~~~~~~~~~l~~i~ 998 (1069)
.+-+..+|+.|-.++.-+.
T Consensus 100 d~~~~~VR~~A~El~~~if 118 (122)
T cd03572 100 DSLNEKVREEAQELIKAIF 118 (122)
T ss_pred cchhHHHHHHHHHHHHHHh
Confidence 2335788888888876553
No 339
>cd00872 PI3Ka_I Phosphoinositide 3-kinase (PI3K) class I, accessory domain ; PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3K class I prefer phosphoinositol (4,5)-bisphosphate as a substrate. Mammalian members interact with active Ras. They form heterodimers with adapter molecules linking them to different signaling pathways.
Probab=61.72 E-value=95 Score=29.52 Aligned_cols=81 Identities=19% Similarity=0.216 Sum_probs=59.2
Q ss_pred ChHHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc-CCCHHHHHHHHHHHHhhcccCCCCcccCCCH
Q 001487 20 DSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDDSFLWPRLSL 98 (1069)
Q Consensus 20 ~~~~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~~p~~~~~~L~~il~~-~~~~~~R~~a~i~L~~~i~~~~~~~w~~l~~ 98 (1069)
++..+..++.++--.|.+.+.++...|.++..-+|. ..+++|.. -.++.||++|...|++ +++
T Consensus 37 ~p~aL~~~l~sv~w~~~~~v~e~~~lL~~W~~i~~~----~aLeLL~~~f~d~~VR~yAV~~L~~------------~sd 100 (171)
T cd00872 37 KPQALPKLLLSVKWNKRDDVAQMYQLLKRWPKLKPE----QALELLDCNFPDEHVREFAVRCLEK------------LSD 100 (171)
T ss_pred CcHHHHHHHhhCCCCCHHHHHHHHHHHHCCCCCCHH----HHHHHCCCcCCCHHHHHHHHHHHHh------------CCH
Confidence 467777788777777888888988888888663333 34566654 4568999999999876 345
Q ss_pred HHHHHHHHHHHHHHhhcc
Q 001487 99 HTQSSLKSMLLQSIQLES 116 (1069)
Q Consensus 99 ~~~~~i~~~ll~~l~~e~ 116 (1069)
+.......+|.|+|.-|+
T Consensus 101 ~eL~~yL~QLVQaLKyE~ 118 (171)
T cd00872 101 DELLQYLLQLVQVLKYEP 118 (171)
T ss_pred HHHHHHHHHHHHHHHccc
Confidence 666667777888888763
No 340
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=61.66 E-value=1.8e+02 Score=28.98 Aligned_cols=152 Identities=18% Similarity=0.153 Sum_probs=93.4
Q ss_pred hHHHHHHHHHHHHhhhcCchHHHHHHHHHHccCCCHHHHHHHHHHHHhhcccCCCCcccCCCHHHHHHHHHHHHHHHhhc
Q 001487 36 NEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLE 115 (1069)
Q Consensus 36 ~~~r~~A~~~L~~~~~~~p~~~~~~L~~il~~~~~~~~R~~a~i~L~~~i~~~~~~~w~~l~~~~~~~i~~~ll~~l~~e 115 (1069)
+..|+-|-...++... . +.+ ..++.-|-.+..-+.|.+|+.++...... ++++.... +-..+..-
T Consensus 33 p~lr~lak~~~~~~~~-~-~~~-~~l~~~L~~~~~~E~~~la~~il~~~~~~--------~~~~~~~~----~~~~~~~~ 97 (213)
T PF08713_consen 33 PDLRKLAKDIYKELKL-S-EEL-YELADELWESGYREERYLALLILDKRRKK--------LTEEDLEL----LEKWLPDI 97 (213)
T ss_dssp HHHHHHHHHHHHHHCT-S-HHH-HHHHHHHHCSSCHHHHHHHHHHHHHCGGG----------HHHHHH----HHHCCCCC
T ss_pred HHHHHHHHHHHhhccc-c-hHH-HHHHHHHcCCchHHHHHHHHHHhHHHhhh--------hhHHHHHH----HHHHhccC
Confidence 4556666665555555 2 333 23333333456689999999999775533 22221222 22222222
Q ss_pred chhhHHHHH-HHHHHHHHhcccCCCCchhhHHHHHHhhcCCChhHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHhhc
Q 001487 116 SAKSISKKL-CDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLT 194 (1069)
Q Consensus 116 ~~~~vr~~~-~~~i~~i~~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~ 194 (1069)
.+..+...+ ..+++.+.... +.+.+.+.+++.|++.-.|..|+.++...... ...+.++..+...+.
T Consensus 98 ~~W~~~D~~~~~~~~~~~~~~------~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~------~~~~~~l~~~~~~~~ 165 (213)
T PF08713_consen 98 DNWATCDSLCSKLLGPLLKKH------PEALELLEKWAKSDNEWVRRAAIVMLLRYIRK------EDFDELLEIIEALLK 165 (213)
T ss_dssp CCHHHHHHHTHHHHHHHHHHH------GGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG------CHHHHHHHHHHHCTT
T ss_pred CcchhhhHHHHHHHHHHHHhh------HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh------cCHHHHHHHHHHHcC
Confidence 345555555 44555554321 78899999999999998888887765433332 357778888888888
Q ss_pred CCCChHHHHHHHHHHHHHHHh
Q 001487 195 NSNNPDVKIAALNAVINFIQC 215 (1069)
Q Consensus 195 ~~~~~~vr~~a~~~l~~l~~~ 215 (1069)
++ +.-||.+.-.+|..+...
T Consensus 166 d~-~~~vq~ai~w~L~~~~~~ 185 (213)
T PF08713_consen 166 DE-EYYVQKAIGWALREIGKK 185 (213)
T ss_dssp GS--HHHHHHHHHHHHHHCTT
T ss_pred Cc-hHHHHHHHHHHHHHHHHh
Confidence 87 889998888888766654
No 341
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=61.58 E-value=3.1e+02 Score=31.88 Aligned_cols=74 Identities=18% Similarity=0.292 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCCChhHHHHHHHHHHHhhhhhhhhcch-hHHHHHHHHHHhhcC
Q 001487 120 ISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTP-HLKHLHAVFLNCLTN 195 (1069)
Q Consensus 120 vr~~~~~~i~~i~~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~-~~~~l~~~l~~~l~~ 195 (1069)
+-..++..+..++.. .+...|+++=..|.+.+-+++.-....++++...++.+...++-. ++..+. .+.+.+..
T Consensus 244 lY~~vl~~Lctfi~~-~~~s~f~eLE~~LL~~vL~~~~l~~lLa~DvWCFlaRygtaeLc~~hv~~L~-~Lik~lp~ 318 (559)
T PF14868_consen 244 LYQHVLVHLCTFIAS-LSPSAFPELERFLLENVLHPHFLCSLLAMDVWCFLARYGTAELCAHHVNLLA-HLIKSLPS 318 (559)
T ss_pred HHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHH-HHHHHcCC
Confidence 444555555555544 454699999999999999999988999999999888776555443 344444 34444443
No 342
>PF03542 Tuberin: Tuberin; InterPro: IPR018515 Initiation of eukaryotic mRNA transcription requires melting of promoter DNA with the help of the general transcription factors TFIIE and TFIIH. In higher eukaryotes, the general transcription factor TFIIE consists of two subunits: the large alpha subunit (IPR002853 from INTERPRO) and the small beta (IPR003166 from INTERPRO). TFIIE beta has been found to bind to the region where the promoter starts to open to be single-stranded upon transcription initiation by RNA polymerase II. The approximately 120-residue central core domain of TFIIE beta plays a role in double-stranded DNA binding of TFIIE []. The TFIIE beta central core DNA-binding domain consists of three helices with a beta hairpin at the C terminus, resembling the winged helix proteins. It shows a novel double-stranded DNA-binding activity where the DNA-binding surface locates on the opposite side to the previously reported winged helix motif by forming a positively charged furrow []. This domain is found in Tuberin proteins. ; GO: 0005096 GTPase activator activity, 0043547 positive regulation of GTPase activity
Probab=61.57 E-value=2.4e+02 Score=30.61 Aligned_cols=118 Identities=16% Similarity=0.276 Sum_probs=72.3
Q ss_pred ChHHHHHHHHHHHHHHHhhCCcchHhHHHhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHccccHHHHHhHHHHHHHH
Q 001487 198 NPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSM 277 (1069)
Q Consensus 198 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l 277 (1069)
..++....+.+|..++.+-+.- +... -..+++.+...+.+ .....|+.++.-.+-..|..+.+.++.++..+
T Consensus 210 ~~D~~~~~~~~Ls~LisYh~~~-~k~~----qd~iV~~l~~GL~s---~~a~~CI~aLtic~~EmP~s~~k~L~~iL~kL 281 (356)
T PF03542_consen 210 RADLQVCVFPVLSALISYHSHF-SKQE----QDEIVRALESGLGS---KTAKPCIHALTICCYEMPDSMKKLLPSILLKL 281 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc-CHhH----HHHHHHHHHHHhcc---CcHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 4567777888888888874311 1111 11455555544433 23455666666555556777888888888766
Q ss_pred HHHhcCCCcchHHHHHHHHHHHHHHHhhhccc-hhhhcc-hhhHHHHHHHHHHhhc
Q 001487 278 LQIAEAESLEEGTRHLAIEFVITLAEARERAP-GMMRKL-PQFINRLFAILMSMLL 331 (1069)
Q Consensus 278 ~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~-~~~~~~-~~~~~~l~~~l~~~l~ 331 (1069)
-++.. ...+..-.+||+..+++ -| .....+ .+-...++..+++++.
T Consensus 282 s~i~t----t~~~Ai~ILEFLs~L~~----lP~~ly~nF~~~~y~~VF~I~l~Y~~ 329 (356)
T PF03542_consen 282 SKIST----TPNMAIHILEFLSSLSR----LPNHLYSNFTEDEYKRVFAIALPYTQ 329 (356)
T ss_pred Hhhcc----chhhHHHHHHHHHHHhh----CcHHHhcCCCHHHHHHHHHHHhhccc
Confidence 65542 34456678999999988 45 444332 3345667888877653
No 343
>KOG1877 consensus Putative transmembrane protein cmp44E [General function prediction only]
Probab=59.93 E-value=3.9e+02 Score=32.39 Aligned_cols=98 Identities=16% Similarity=0.222 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHhhhcccccHHHHHHHHhhccCCcCChHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Q 001487 689 ATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFI 768 (1069)
Q Consensus 689 ~~a~~~l~~l~~~~~~~~~p~~~~~~~~l~~~l~~~~~~~ir~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i 768 (1069)
..|+.+...+..+|++....|...++..+.++++.. +++.+..++.++..++... +..+.+... ++.+
T Consensus 74 ~Iamea~~kLL~~C~eq~n~F~ssfL~mv~~LLes~-~~~~~ilg~~sf~~F~~i~----------~d~~sy~~~-yd~F 141 (819)
T KOG1877|consen 74 KIAMEAYDKLLQACKEQINLFVSSFLRMVQKLLESN-NDEMQILGTNSFVKFANIE----------EDGPSYHRN-YDFF 141 (819)
T ss_pred hhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC-CCceeeehhhHHHHHHhhc----------ccCchhhhh-hHHH
Confidence 357888999999999999888899999999999987 8899999999877776532 112233333 4555
Q ss_pred HHHHHHHHccCCcHH----HHHHHHHHHHHHHHH
Q 001487 769 IPALVEALHKEPDTE----ICASMLDSLNECIQI 798 (1069)
Q Consensus 769 ~~~l~~~~~~~~~~~----v~~~~l~~l~~~i~~ 798 (1069)
++.+.+...+..+.+ ++.+-+.++..++..
T Consensus 142 i~kf~~l~he~~~~~~~~~lr~agl~gLsa~v~~ 175 (819)
T KOG1877|consen 142 ISKFSSLCHERGDDDMKDCLRAAGLQGLSAVVWL 175 (819)
T ss_pred HHHHHHHhhcccchhhhhhccHhhhhhHHHHHHH
Confidence 665555544433322 344445555554433
No 344
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=59.86 E-value=3.6e+02 Score=32.01 Aligned_cols=114 Identities=15% Similarity=0.153 Sum_probs=70.2
Q ss_pred hhcchhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhCCcchHhHHHhhHHHHHHHHHHHHhCCChHHHHHHHHHH
Q 001487 176 DTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELL 255 (1069)
Q Consensus 176 ~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~l 255 (1069)
..+...+..+++.+.....++ -+.|+..+++.+..+...-+. .-. .++..+...+.+++..+...+.-.|
T Consensus 296 ~~LK~ly~rfievLe~lS~D~-L~~vk~raL~ti~~lL~~kPE-----qE~----~LL~~lVNKlGDpqnKiaskAsylL 365 (988)
T KOG2038|consen 296 HELKILYFRFIEVLEELSKDP-LEEVKKRALKTIYDLLTNKPE-----QEN----NLLVLLVNKLGDPQNKIASKASYLL 365 (988)
T ss_pred HHHHHHHHHHHHHHHHHcccc-HHHHHHHHHHHHHHHHhCCcH-----HHH----HHHHHHHHhcCCcchhhhhhHHHHH
Confidence 334455677777777777776 889999999999998876431 112 3444444455566666666666777
Q ss_pred HHHHccccHHHHHhHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHH
Q 001487 256 IELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAE 303 (1069)
Q Consensus 256 ~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~ 303 (1069)
..+...+|..=.-.+.+|..++++ +..+......|+.+|..+.-
T Consensus 366 ~~L~~~HPnMK~Vvi~EIer~~FR----pn~~~ra~Yyav~fLnQ~~L 409 (988)
T KOG2038|consen 366 EGLLAKHPNMKIVVIDEIERLAFR----PNVSERAHYYAVIFLNQMKL 409 (988)
T ss_pred HHHHhhCCcceeehHHHHHHHHcc----cCccccceeehhhhhhhhHh
Confidence 777766654322223344444433 44555566677777776654
No 345
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=59.39 E-value=2.7e+02 Score=34.70 Aligned_cols=134 Identities=13% Similarity=0.135 Sum_probs=74.4
Q ss_pred CCChhHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhCCcchHhHHHhhHHHHH
Q 001487 154 SDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMM 233 (1069)
Q Consensus 154 ~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l 233 (1069)
+-.+..|..++.-|+..+..++..|.. ...+..+-=.|.|. +..||..++++|..+.+.-.. ...+..+...+=
T Consensus 298 DV~~~IRaiCiqeLgiWi~~yP~~Fl~--dsYLKYiGWtLsDk-~~~VRl~~lkaL~~L~e~~~~---~~~L~lFtsRFK 371 (1048)
T KOG2011|consen 298 DVDPDIRAICIQELGIWIKSYPEIFLS--DSYLKYIGWTLSDK-NGTVRLRCLKALIKLYEKDED---KDKLELFTSRFK 371 (1048)
T ss_pred cCchHHHHHHHHHHHHHHHhccHHHhc--chHHHHhcceeecC-ccHHHHHHHHHHHHHHhcccc---chHHHHHHHHHH
Confidence 457889999999999999988876532 22333343456676 889999999999999986321 122222222333
Q ss_pred HHHHHHH-hCCChHHHHHHHHHHHHHHccccHHHH-HhHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHH
Q 001487 234 RTLTESL-NNGNEATAQEALELLIELAGTEPRFLR-RQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITL 301 (1069)
Q Consensus 234 ~~l~~~l-~~~~~~~~~~~~~~l~~l~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l 301 (1069)
..+.+.. .+-+.++|...+....... .+..+. .-+..+...+. +.+..++..|..++..-
T Consensus 372 ~RIVeMadrd~~~~Vrav~L~~~~~~~--~~g~L~d~di~~Vy~Li~------d~~r~~~~aa~~fl~~k 433 (1048)
T KOG2011|consen 372 DRIVEMADRDRNVSVRAVGLVLCLLLS--SSGLLSDKDILIVYSLIY------DSNRRVAVAAGEFLYKK 433 (1048)
T ss_pred HHHHHHHhhhcchhHHHHHHHHHHHHh--cccccChhHHHHHHHHHh------ccCcchHHHHHHHHHHH
Confidence 3333333 2345556655544443322 112221 11222222222 23456677777766543
No 346
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=58.99 E-value=1.7e+02 Score=27.86 Aligned_cols=98 Identities=15% Similarity=0.198 Sum_probs=64.8
Q ss_pred hhHHHHHHHHHHHhhhhhhhhcch----------hHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhCCcchHhHHH
Q 001487 157 VKLQESAFLIFAQLSQYIGDTLTP----------HLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQ 226 (1069)
Q Consensus 157 ~~~r~~al~~l~~l~~~~~~~~~~----------~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ 226 (1069)
...|..++.++..+.+..+..+.. .-..+.+.+.+.+.++ +..+-..+++.+..++..+. ..+.
T Consensus 36 ~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~-~~~i~~~slri~~~l~~~~~-----~~Lk 109 (168)
T PF12783_consen 36 ERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSS-DFPIFSRSLRIFLTLLSRFR-----SHLK 109 (168)
T ss_pred HHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHH-----HHHH
Confidence 456778889998888876665541 1245677777777776 68888889999998887752 2233
Q ss_pred hhHHHHHHHHHH-HHhCCC--hHHHHHHHHHHHHHHc
Q 001487 227 DLLPLMMRTLTE-SLNNGN--EATAQEALELLIELAG 260 (1069)
Q Consensus 227 ~~~~~~l~~l~~-~l~~~~--~~~~~~~~~~l~~l~~ 260 (1069)
.-+..++..+.. .+.+.. ...|..+++++..+++
T Consensus 110 ~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~ 146 (168)
T PF12783_consen 110 LELEVFLSHIILRILESDNSSLWQKELALEILRELCK 146 (168)
T ss_pred HHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHh
Confidence 333444444443 333332 3577788999988886
No 347
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=58.99 E-value=1.8e+02 Score=29.70 Aligned_cols=48 Identities=23% Similarity=0.211 Sum_probs=33.6
Q ss_pred HHHHHHhhcCCCCCChhhhhhHHHHHHHHHHHHhhcCCCC-CHhhHHHHHHhh
Q 001487 966 LSRLNVVIRHPNALQPENLMAYDNAVSALGKICQFHRDSI-DAAQVVPAWLNC 1017 (1069)
Q Consensus 966 l~~L~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~-~~~~~~~~~l~~ 1017 (1069)
++.|.+.+..++ -+.-+|.+|+.+++.+...+|..- .+-+.+..++..
T Consensus 113 ~~~L~~li~~~~----~~~yvR~aa~~aL~~l~~~~~~~Re~vi~~f~~ll~~ 161 (249)
T PF06685_consen 113 IEPLKELIEDPD----ADEYVRMAAISALAFLVHEGPISREEVIQYFRELLNY 161 (249)
T ss_pred HHHHHHHHhCCc----HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 455666666663 367899999999999998887642 355555666654
No 348
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=56.77 E-value=1.8e+02 Score=32.71 Aligned_cols=155 Identities=12% Similarity=0.101 Sum_probs=90.4
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhH-HHHHHHHHhhCCCCChhHHHHHHHHHHHhHhhhchhHHhh
Q 001487 378 ASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNL-EQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQ 456 (1069)
Q Consensus 378 l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~-~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 456 (1069)
+.+.+.+.+++|+..+...+...+....-..+..-...+ ..++..+.+.+...+...|....|.+..+.-.++....-+
T Consensus 432 I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq~~ekf~ 511 (743)
T COG5369 432 IVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQKNEKFK 511 (743)
T ss_pred hHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcCcchhhhh
Confidence 455566677776655554444443333222221111222 3567777777777777888889999988776665443212
Q ss_pred h-hhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCc-----ccccCch--HHHHHHHHHHhhcCChhHHHHHHHHHH
Q 001487 457 F-HPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTP-----EILTPYL--DGIVSKLLVLLQNGKQMVQEGALTALA 528 (1069)
Q Consensus 457 ~-~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~-----~~~~~~l--~~i~~~l~~~l~~~~~~v~~~al~~l~ 528 (1069)
. ...=+..++...+| +...|+..+.+.+.+|..+.+. +.+.... .-+...++..+...++..-...+..+-
T Consensus 512 ~Lakig~~kvl~~~ND-pc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~i~~~~yilv 590 (743)
T COG5369 512 FLAKIGVEKVLSYTND-PCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEENNPMEILEGCYILV 590 (743)
T ss_pred hHHhcCHHHHHHHhcC-cccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHhcCchhhhhhHHHHH
Confidence 2 33446677888899 9999999999999998764332 1111111 124556666666666544444455555
Q ss_pred HHHHh
Q 001487 529 SVADS 533 (1069)
Q Consensus 529 ~l~~~ 533 (1069)
.++..
T Consensus 591 ~~aa~ 595 (743)
T COG5369 591 RNAAC 595 (743)
T ss_pred HHHhc
Confidence 55443
No 349
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=56.54 E-value=54 Score=31.90 Aligned_cols=58 Identities=9% Similarity=0.102 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHhHhhhhhhhh--hHhHHHHHHhhccCCChhHHHhhhHHHHHHHhh
Q 001487 896 AEERRIAICIFDDVAEQCREAALKY--YETYLPFLLEACNDENQDVRQAAVYGLGVCAEF 953 (1069)
Q Consensus 896 ~~~r~~a~~~l~~l~~~~~~~~~~~--~~~l~~~ll~~l~~~~~~vr~~a~~~lg~l~~~ 953 (1069)
...|.+++++||.++++..+.+..+ ..+++|..+.-+...++--+..|++.+|.+.-.
T Consensus 160 EyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrIme~gSElSktvaifI~qkil~d 219 (315)
T COG5209 160 EYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRIMELGSELSKTVAIFIFQKILGD 219 (315)
T ss_pred ceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 4568899999999999988877663 368999999998888887788888888887654
No 350
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.01 E-value=2.7e+02 Score=29.39 Aligned_cols=316 Identities=13% Similarity=0.164 Sum_probs=159.8
Q ss_pred CCchhhHHHHHHhhcCCChhHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHhhcCC-CChHHHHHHHHHHHHHHHhhC
Q 001487 139 NGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNS-NNPDVKIAALNAVINFIQCLT 217 (1069)
Q Consensus 139 ~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~-~~~~vr~~a~~~l~~l~~~~~ 217 (1069)
+.++-++-... ...+++.....-++.++..+...-++-+...-. ..++..|... .+.++....++++....-.-+
T Consensus 104 ga~~~~it~~~-la~~~~~~~l~ksL~al~~lt~~qpdl~da~g~---~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE 179 (461)
T KOG4199|consen 104 GAHDALITLLE-LAESPNESVLKKSLEAINSLTHKQPDLFDAEAM---AVVLKLLALKVESEEVTLLTLQWLQKACIMHE 179 (461)
T ss_pred CCcchhhhHHH-HhhCCchhHHHHHHHHHHHhhcCCcchhccccH---HHHHHHHhcccchHHHHHHHHHHHHHHHHHhH
Confidence 34555555444 356777777777788887776654443322222 2333333332 267888888888776543221
Q ss_pred CcchHhHHHhhHHHHHHHHHHHHh-CCChHHHHHHHHHHHHHHcccc-----HHHHHhHHHH-----HHHHHHHhcCCCc
Q 001487 218 SSADRDRFQDLLPLMMRTLTESLN-NGNEATAQEALELLIELAGTEP-----RFLRRQLVDV-----VGSMLQIAEAESL 286 (1069)
Q Consensus 218 ~~~~~~~~~~~~~~~l~~l~~~l~-~~~~~~~~~~~~~l~~l~~~~~-----~~~~~~~~~l-----~~~l~~~~~~~~~ 286 (1069)
.....|.+. .+++.+.+.+. .+..++....++.+..+..... .....|...+ +..+...+.. ..
T Consensus 180 --~nrQ~~m~~--~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A-~~ 254 (461)
T KOG4199|consen 180 --VNRQLFMEL--KILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQA-GI 254 (461)
T ss_pred --HHHHHHHHh--hHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHc-cC
Confidence 122222221 23333333332 2334566666777766553210 0111122211 2222222211 12
Q ss_pred chHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCcchhhHHHHHHHHH
Q 001487 287 EEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLA 366 (1069)
Q Consensus 287 ~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~e~ed~~~~~~~~~a~~~l~~l~ 366 (1069)
++++-......+..++-..+-..++.. ..=+..++.++.+..+ ...+..+..++..+.
T Consensus 255 dp~~L~~l~~tl~~lAVr~E~C~~I~e------~GGl~tl~~~i~d~n~----------------~~~r~l~k~~lslLr 312 (461)
T KOG4199|consen 255 DPDSLVSLSTTLKALAVRDEICKSIAE------SGGLDTLLRCIDDSNE----------------QGNRTLAKTCLSLLR 312 (461)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHH------ccCHHHHHHHHhhhch----------------hhHHHHHHHHHHHHH
Confidence 344444455555555542110000000 0013344444433211 123456777777777
Q ss_pred HHcCCccchHH---------HHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHH-HHHHHHhhCC-C-CChhH
Q 001487 367 IALGGNTIVPV---------ASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQ-VLSMVLNSFR-D-PHPRV 434 (1069)
Q Consensus 367 ~~~~~~~~~~~---------l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~-i~~~l~~~l~-d-~~~~v 434 (1069)
...|.+.+-.. +...+.+. +.++.+-+.++.++..++-..++.-...++. .-...++.++ . ....|
T Consensus 313 alAG~DsvKs~IV~~gg~~~ii~l~~~h--~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~v 390 (461)
T KOG4199|consen 313 ALAGSDSVKSTIVEKGGLDKIITLALRH--SDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQV 390 (461)
T ss_pred HHhCCCchHHHHHHhcChHHHHHHHHHc--CCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHH
Confidence 66665443333 32222222 4578888888888888887666543333331 2233444443 2 24578
Q ss_pred HHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhh
Q 001487 435 RWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFS 489 (1069)
Q Consensus 435 r~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~ 489 (1069)
+..|||.+..++..-...- ...+..=++.|+..-.. .++.++..+-.+|..+-
T Consensus 391 Qrnac~~IRNiv~rs~~~~-~~~l~~GiE~Li~~A~~-~h~tce~~akaALRDLG 443 (461)
T KOG4199|consen 391 QRNACNMIRNIVVRSAENR-TILLANGIEKLIRTAKA-NHETCEAAAKAALRDLG 443 (461)
T ss_pred HHHHHHHHHHHHHhhhhcc-chHHhccHHHHHHHHHh-cCccHHHHHHHHHHhcC
Confidence 9999999999886543322 44555566667766666 67888887877877663
No 351
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=55.71 E-value=31 Score=27.16 Aligned_cols=54 Identities=13% Similarity=0.075 Sum_probs=41.0
Q ss_pred HHHHHHHHHHhHhhhchhHHhhhh--hhhHHHHHhhccCCCChhHHHHHHHHHHHhhhc
Q 001487 435 RWAAINAIGQLSTDLGPDLQNQFH--PQVLPALAGAMDDFQNPRVQAHAASAVLNFSEN 491 (1069)
Q Consensus 435 r~~a~~~l~~l~~~~~~~~~~~~~--~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~ 491 (1069)
.++|+|+++.++..-.. ..++ ..+++.+++.....+...+|..+..+|.-+...
T Consensus 4 lKaaLWaighIgss~~G---~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T 59 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLG---IQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISST 59 (73)
T ss_pred HHHHHHHHHhHhcChHH---HHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCC
Confidence 46899999999864222 1333 368899988877658889999999999888754
No 352
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=55.42 E-value=55 Score=29.03 Aligned_cols=74 Identities=12% Similarity=0.238 Sum_probs=53.8
Q ss_pred HhHHHHHHHHHhhCC-CCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcC
Q 001487 414 KNLEQVLSMVLNSFR-DPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENC 492 (1069)
Q Consensus 414 ~~~~~i~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~ 492 (1069)
.++..++|.+..+|. ...+..|-++...++.++...+= ..+.+..++..+++.... ... ...+..++..++..-
T Consensus 2 ~~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L--~~~~l~~l~~~i~~~~~~-~~~--~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 2 DILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPL--SDEVLNALMESILKNWTQ-ETV--QRQALICLIVLCQSQ 76 (121)
T ss_pred cHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCC--cHHHHHHHHHHHHhcccc-chh--HHHHHHHHHHHHHcc
Confidence 357789999999999 88899999999999999876532 235566677777666665 333 456667777777554
No 353
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=54.93 E-value=1.3e+02 Score=39.55 Aligned_cols=166 Identities=19% Similarity=0.214 Sum_probs=0.0
Q ss_pred HHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHH
Q 001487 400 ALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQA 479 (1069)
Q Consensus 400 ~l~~l~~~~~~~~~~~~~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~ 479 (1069)
.+.....+....+..|++.++...-..++++++.|+.-+......+...+. ..+-.+++..|+..+.+ .+..-..
T Consensus 417 ll~~~f~~~~~vL~~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fd----s~~qqeVv~~Lvthi~s-g~~~ev~ 491 (1426)
T PF14631_consen 417 LLDQTFKGHSEVLKDYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFD----SYCQQEVVGALVTHIGS-GNSQEVD 491 (1426)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-----HHHHHHHHHHHHHHHHH---HHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhcc----chhHHHHHHHHHHHHcC-CcHHHHH
Q ss_pred HHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhHhhhHhhHhhhhHHHHHHHhhccCc
Q 001487 480 HAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDK 559 (1069)
Q Consensus 480 ~a~~al~~l~~~~~~~~~~~~l~~i~~~l~~~l~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~ 559 (1069)
.|...|..+++... +.+.+| ...+..++..+++-+..=-...+..++.++...+..-...-+.+.-.+.+-+.+...
T Consensus 492 ~aL~vL~~L~~~~~-~~l~~f-a~~l~giLD~l~~Ls~~qiR~lf~il~~La~~~~~~~s~i~del~ivIRKQLss~~~- 568 (1426)
T PF14631_consen 492 AALDVLCELAEKNP-SELQPF-ATFLKGILDYLDNLSLQQIRKLFDILCTLAFSDSSSSSSIQDELHIVIRKQLSSSNP- 568 (1426)
T ss_dssp HHHHHHHHHHHH-H-HHHHHT-HHHHHGGGGGGGG--HHHHHHHHHHHHHHHHHHSS---HHHHHHHHHHHHHHT-SSH-
T ss_pred HHHHHHHHHHhccH-HHHHHH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHhhcCCcH-
Q ss_pred cccchhhHHHHHHHHHHHh
Q 001487 560 SNRMLRAKSMECISLVGMA 578 (1069)
Q Consensus 560 ~~~~lr~~a~~~l~~l~~~ 578 (1069)
+.+-+..+|.+...
T Consensus 569 -----~~K~~GIIGav~~i 582 (1426)
T PF14631_consen 569 -----KYKRIGIIGAVMMI 582 (1426)
T ss_dssp -----HHHHHHHHHHHHHH
T ss_pred -----HHHHHhHHHHHHHH
No 354
>PF08146 BP28CT: BP28CT (NUC211) domain; InterPro: IPR012954 This C-terminal domain is found in BAP28-like nucleolar proteins []. The bap28 mutation leads to abnormalities in the brain, starting at midsomitogenesis stages. Mutant zebrafish embryos display excessive apoptosis, especially in the central nervous system (CNS) that results in death. The mutation affects a gene that encodes a large protein with high similarity to the uncharacterised human protein BAP28 and lower similarity to yeast Utp10. Utp10 is a component of a nucleolar U3 small nucleolar RNA-containing RNP complex that is required for transcription of ribosomal DNA and for processing of 18 S rRNA. Zebrafish Bap28 is also required for rRNA transcription and processing, with a major effect on 18S rRNA maturation. Bap28 is therefore required for cell survival in the CNS through its role in rRNA synthesis and processing [].
Probab=54.24 E-value=62 Score=30.17 Aligned_cols=82 Identities=13% Similarity=0.169 Sum_probs=57.0
Q ss_pred chhhHHHHHHHHHHHhhChhhhhhhHHHHHHHHHH-HhcCCCCCCCchhhHHHHHHHHHHHHhcCCcccchhhhhHHHHH
Q 001487 563 MLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMS-LQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQ 641 (1069)
Q Consensus 563 ~lr~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~-l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~ 641 (1069)
.+-..+++|+-.+...+....|.|....+++.... +............-.....+..+++.++.-|.||...+++...+
T Consensus 36 ~vE~~v~~~~~~lV~KLnE~~FRPlF~~l~dWA~~~l~~~~~~~~~~R~itfy~l~~~l~e~LKslf~~Y~~~ll~~~~~ 115 (153)
T PF08146_consen 36 EVESSVISAFVSLVLKLNEATFRPLFLKLVDWATSGLPKSDSSGSRARLITFYRLLNALAEKLKSLFTPYFSYLLDNAVD 115 (153)
T ss_pred HHHHHHHHHHHHHHHHcccchhHhHHHHHHHHHcccCCcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555778888888888888999999888887654 22211111112233445667778888888899999999998877
Q ss_pred hcc
Q 001487 642 SAQ 644 (1069)
Q Consensus 642 ~~~ 644 (1069)
.++
T Consensus 116 ~L~ 118 (153)
T PF08146_consen 116 LLK 118 (153)
T ss_pred HHH
Confidence 774
No 355
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.86 E-value=1.3e+02 Score=33.84 Aligned_cols=117 Identities=17% Similarity=0.107 Sum_probs=78.7
Q ss_pred hccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhHhhhHhhH--hhh
Q 001487 468 AMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYY--DAV 545 (1069)
Q Consensus 468 ~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~i~~~l~~~l~~~~~~v~~~al~~l~~l~~~~~~~~~~~~--~~i 545 (1069)
.+.+ +++..-...|..| +.+ ...-+..+..|.+.+++.++.++-.|+..|-.+++.+|..|.-.+ ..+
T Consensus 13 ~l~~-pDWa~NleIcD~I-------N~~--~~~~~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~f 82 (470)
T KOG1087|consen 13 SLAE-PDWALNLEICDLI-------NST--EGGPKEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEF 82 (470)
T ss_pred cccC-ccHHHHHHHHHHH-------hcC--ccCcHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3444 6666544444443 222 123447888999999988889999999999999999999876322 345
Q ss_pred hHHHHHHHhhccCccccchhhHHHHHHHHHHHhhCh-hhhhhhHHHHHHHHH
Q 001487 546 MPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGK-DKFRDDAKQVMEVLM 596 (1069)
Q Consensus 546 ~~~l~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~-~~~~~~~~~i~~~l~ 596 (1069)
++-+....++.. -...+|.+++..|-....+++. ....|....+...+.
T Consensus 83 L~emVk~~k~~~--~~~~Vr~kiL~LI~~W~~af~~~~~~~~~~~~~y~~l~ 132 (470)
T KOG1087|consen 83 LNEMVKRPKNKP--RDLKVREKILELIDTWQQAFCGPDGYLPDYYQIYDELR 132 (470)
T ss_pred HHHHHhccccCC--cchhHHHHHHHHHHHHHHHccCCCCcchhHHHHHHHHH
Confidence 555555554431 3567899999999999998874 444555555554443
No 356
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=53.09 E-value=3.4e+02 Score=29.64 Aligned_cols=42 Identities=12% Similarity=0.143 Sum_probs=28.6
Q ss_pred hhcccccHHHHHHHHhhccCCcCChHHHHHHHHhHHHHHHHHH
Q 001487 703 KEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAK 745 (1069)
Q Consensus 703 ~~~~~p~~~~~~~~l~~~l~~~~~~~ir~~a~~~l~~l~~~~~ 745 (1069)
......|+.++...+-+.+. ..+.+........+|.+++.+.
T Consensus 60 ~~k~~~Y~g~~~k~i~p~l~-~~~se~l~~~Y~~lg~lvk~c~ 101 (373)
T PF14911_consen 60 VTKLLEYFGDFEKWIKPYLK-SKSSEGLQRIYRVLGILVKHCS 101 (373)
T ss_pred HHHHHHHHHHHHHHcCCccc-cCCHHHHHHHHHHHHHHHHhcc
Confidence 34456777888777777763 3366677777788888777543
No 357
>PLN03205 ATR interacting protein; Provisional
Probab=52.85 E-value=3.2e+02 Score=29.35 Aligned_cols=136 Identities=15% Similarity=0.179 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCCChhHHHHHHHHHHHhhhhhhhh-------cchhHHHHHHHHHHhhc
Q 001487 122 KKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDT-------LTPHLKHLHAVFLNCLT 194 (1069)
Q Consensus 122 ~~~~~~i~~i~~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~-------~~~~~~~l~~~l~~~l~ 194 (1069)
..+.++.+.+.+.....-....++..|..+..-.+..+...++++|..+.++.-.. .....-.++..+.+...
T Consensus 302 ekVshlYs~~tKiS~G~V~lqtLlEaLLdLC~v~n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NWvsLfElm~QiAv 381 (652)
T PLN03205 302 EKVYHLYSAVTKISYGFVNLKSLVEPLLDLCKAETAVLVHRSLRVLHVLLEHICGDEKRFEASWDANWHSLFELMNQIAS 381 (652)
T ss_pred HHHHHHHHHHHHhhCCeeeHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHhCCcccccccccccHHHHHHHHHHHHh
Confidence 44555666666543333356789999999998888888899999999888874221 12245556666655433
Q ss_pred CCCChHHHHHHHHHHHHHHHhhCCcchHhHHHhhHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHH
Q 001487 195 NSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNN-GNEATAQEALELLIELA 259 (1069)
Q Consensus 195 ~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~-~~~~~~~~~~~~l~~l~ 259 (1069)
......||..|+.++..++..-......+.|... .+++.+.++++. ...-+++.++.+|--+.
T Consensus 382 ~~TEE~VrLEAvSIMnVIlmssna~~eREkFG~~--~VfESiaQLLkkEaGl~VqKealhLLfLLL 445 (652)
T PLN03205 382 IRTEEDVKLEALSIMNIIVMSTDAYTARESFVSK--EVFESISLLLRKEGGLHVRKEAIHLFYLLL 445 (652)
T ss_pred ccchhheeeehhhhhHHhhhccchhHHHHHhcch--HHHHHHHHHHHHhccchhhHHHHHHHHHHH
Confidence 2237789999998887766543211122333221 234444444432 23456666766554433
No 358
>cd00864 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear, but it has been suggested to be involved in substrate presentation. Phosphoinositide 3-kinases play an important role in a variety of fundamental cellular processes and can be divided into three main classes, defined by their substrate specificity and domain architecture.
Probab=52.73 E-value=1.1e+02 Score=28.55 Aligned_cols=81 Identities=21% Similarity=0.218 Sum_probs=57.4
Q ss_pred ChHHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc-CCCHHHHHHHHHHHHhhcccCCCCcccCCCH
Q 001487 20 DSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDDSFLWPRLSL 98 (1069)
Q Consensus 20 ~~~~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~~p~~~~~~L~~il~~-~~~~~~R~~a~i~L~~~i~~~~~~~w~~l~~ 98 (1069)
++..+..++..+--.+.+.+.++...|.....-+| ...+++|.. -.++.||+.|...|++ +++
T Consensus 37 ~p~~lp~~L~sv~w~~~~~~~e~~~lL~~W~~~~~----~~aL~LL~~~~~~~~vr~yAv~~L~~------------~~~ 100 (152)
T cd00864 37 VPKALPKLLKSVNWNDDEEVSELYQLLKWWAPLSP----EDALELLSPKYPDPVVRQYAVRVLES------------ASD 100 (152)
T ss_pred ChHHHHHHHHHccCCCHHHHHHHHHHHhcCCCCCH----HHHHHHcCCcCCCHHHHHHHHHHHHh------------CCH
Confidence 45667777877777788888888888877655333 334555654 4569999999998866 345
Q ss_pred HHHHHHHHHHHHHHhhcc
Q 001487 99 HTQSSLKSMLLQSIQLES 116 (1069)
Q Consensus 99 ~~~~~i~~~ll~~l~~e~ 116 (1069)
+.......+|.|+|.-|+
T Consensus 101 ~~l~~ylpQLVQaLkye~ 118 (152)
T cd00864 101 DELLLYLPQLVQALKYEP 118 (152)
T ss_pred HHHHHHHHHHHHHHhccc
Confidence 666777778888887654
No 359
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=52.58 E-value=1e+02 Score=32.91 Aligned_cols=75 Identities=13% Similarity=0.129 Sum_probs=54.0
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHH--HHHHHHHhhCC-CCChhHHHHHHHHHHHhHhhhc
Q 001487 376 PVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLE--QVLSMVLNSFR-DPHPRVRWAAINAIGQLSTDLG 450 (1069)
Q Consensus 376 ~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~--~i~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~ 450 (1069)
...+..+...+++.++++..-|+..+++++.+|++.+...+. ++..-+...+. ..+++|+......+..+++.+.
T Consensus 44 kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWsee~K 121 (462)
T KOG2199|consen 44 KDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSEEFK 121 (462)
T ss_pred HHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhc
Confidence 456677788889999999999999999999999986654332 33444444444 5678888777777766666554
No 360
>COG4912 Predicted DNA alkylation repair enzyme [DNA replication, recombination, and repair]
Probab=52.16 E-value=79 Score=31.05 Aligned_cols=83 Identities=19% Similarity=0.180 Sum_probs=52.8
Q ss_pred HHHHHHHHcCCccchHHHHHHHHHhhcCCC-hHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHH
Q 001487 361 CLDRLAIALGGNTIVPVASEQLPAYLAAPE-WQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAI 439 (1069)
Q Consensus 361 ~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~-~~~r~aal~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~d~~~~vr~~a~ 439 (1069)
+++.++.++..-...+.+++......++.+ |..|-+....+...-+. .....+++.+-..+.|.+..|+.+.-
T Consensus 102 vvD~la~~~V~~~~~~~li~~~~a~~~~~~~w~rraaiv~~l~~~k~~------~~~~~if~i~E~~l~d~e~fV~KAig 175 (222)
T COG4912 102 VVDTLANHFVGIPLWPDLIEEWAADAEEDNRWERRAAIVHQLVYKKKT------LDLLEIFEIIELLLGDKEFFVQKAIG 175 (222)
T ss_pred HHHHHHHHhhccccCHHHHHHHHhccccchHHHHHHHHHHHHHHhcCc------cchhHHHHHHHHHccChHHHHHHHHH
Confidence 344444444323455666666644444444 55555545444443332 23346888888899999999999999
Q ss_pred HHHHHhHhhh
Q 001487 440 NAIGQLSTDL 449 (1069)
Q Consensus 440 ~~l~~l~~~~ 449 (1069)
|+|.+++.+.
T Consensus 176 WaLrq~~k~~ 185 (222)
T COG4912 176 WALRQIGKHS 185 (222)
T ss_pred HHHHHHHhhc
Confidence 9999998744
No 361
>cd00870 PI3Ka_III Phosphoinositide 3-kinase (PI3K) class III, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3Ks class III phosphorylate phosphoinositol (PtdIns) only. The prototypical PI3K class III, yeast Vps34, is involved in trafficking proteins from Golgi to the vacuole.
Probab=51.74 E-value=1.1e+02 Score=28.87 Aligned_cols=78 Identities=17% Similarity=0.126 Sum_probs=48.5
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc-CCCHHHHHHHHHHHHhhcccCCCCcccCCCHHHH
Q 001487 23 PFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQ 101 (1069)
Q Consensus 23 ~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~~p~~~~~~L~~il~~-~~~~~~R~~a~i~L~~~i~~~~~~~w~~l~~~~~ 101 (1069)
.+..+|.++-=.|...+++|.+.|.++..-+| ...+++|.. -.++.||++|...|++ ++++..
T Consensus 47 aL~~~L~sv~W~~~~e~~e~~~lL~~W~~i~~----~~aLeLL~~~f~~~~VR~yAV~~L~~------------~sd~eL 110 (166)
T cd00870 47 ALTKFLKSVNWSDEQEVKQALELMPKWAKIDI----EDALELLSPYFTNPVVRKYAVSRLKL------------ASDEEL 110 (166)
T ss_pred HHHHHhhhCCCCCHHHHHHHHHHHhcCCCCCH----HHHHHHcCccCCCHHHHHHHHHHHHh------------CCHHHH
Confidence 33344444433455667777777777755233 334556654 4468889998888876 345566
Q ss_pred HHHHHHHHHHHhhcc
Q 001487 102 SSLKSMLLQSIQLES 116 (1069)
Q Consensus 102 ~~i~~~ll~~l~~e~ 116 (1069)
......|+|+|.-|+
T Consensus 111 ~~yL~QLVQaLKyE~ 125 (166)
T cd00870 111 LLYLLQLVQALKYEN 125 (166)
T ss_pred HHHHHHHHHHHHhcc
Confidence 666677788887663
No 362
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.61 E-value=1.9e+02 Score=32.57 Aligned_cols=87 Identities=9% Similarity=0.165 Sum_probs=67.3
Q ss_pred HHHHHHHhhCCCCChhHHHHHHHHHHHhHhhhchhHHhhh-hhhhHHHHHhhccCC-CChhHHHHHHHHHHHhhhcCCcc
Q 001487 418 QVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQF-HPQVLPALAGAMDDF-QNPRVQAHAASAVLNFSENCTPE 495 (1069)
Q Consensus 418 ~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~~il~~l~~~l~~~-~~~~v~~~a~~al~~l~~~~~~~ 495 (1069)
+.+..|.+.+++.++.+..-|+..|..+.+.|+..|.... -..+++..+...+.. ....||..++..|...-+.++..
T Consensus 38 eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W~~af~~~ 117 (470)
T KOG1087|consen 38 EAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDTWQQAFCGP 117 (470)
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHHHHHHccCC
Confidence 6777888899999999999999999999999987763222 346778888888875 56789999999999998887652
Q ss_pred cccCchHHHHH
Q 001487 496 ILTPYLDGIVS 506 (1069)
Q Consensus 496 ~~~~~l~~i~~ 506 (1069)
..|++....
T Consensus 118 --~~~~~~~~~ 126 (470)
T KOG1087|consen 118 --DGYLPDYYQ 126 (470)
T ss_pred --CCcchhHHH
Confidence 245555433
No 363
>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.
Probab=51.08 E-value=4.8e+02 Score=30.78 Aligned_cols=52 Identities=27% Similarity=0.159 Sum_probs=31.2
Q ss_pred hHhHHHHHHhhccC--CChhHHHhhhHHHHHHHhhcCCCchHHHHHHHHHHHHh
Q 001487 921 YETYLPFLLEACND--ENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVV 972 (1069)
Q Consensus 921 ~~~l~~~ll~~l~~--~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~~l~~L~~~ 972 (1069)
.+.++..+++.+.+ ..+.+|++|+.=||.++......-..++...+..|...
T Consensus 344 ~~~Fl~~L~~~~~~~~~~~~~R~~A~~YlaSflaRAk~v~~~~v~~~l~~L~~w 397 (563)
T PF05327_consen 344 ADAFLSFLWKIAFDPNQPPVTRQAAAAYLASFLARAKFVPLSTVRSVLSYLCDW 397 (563)
T ss_dssp HHHHHHHHHHHHH-SSS-HHHHHHHHHHHHHHHHHBTT--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 33444455544444 45788999999999988887755445555555555553
No 364
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=50.94 E-value=1.4e+02 Score=29.15 Aligned_cols=132 Identities=17% Similarity=0.155 Sum_probs=71.0
Q ss_pred HHHHHHHHHhhCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChh--HHHHHHHHHHHhhhcCC
Q 001487 416 LEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPR--VQAHAASAVLNFSENCT 493 (1069)
Q Consensus 416 ~~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~--v~~~a~~al~~l~~~~~ 493 (1069)
..+++..+++..-+.-.+||..|..++..+.....+.+ ++++ -.+.+...+.. +... .-......+..++.-+.
T Consensus 5 ~~~~~~~llrqa~EKiDrvR~~A~~~l~~ll~~~~~~~--~~ip-~~~~L~~i~~~-~~~~~~~w~~~~~~F~~l~~LL~ 80 (193)
T PF12612_consen 5 VQQIIGGLLRQAAEKIDRVREVAGKCLQRLLHSQDPTI--PHIP-HREELQDIFPS-ESEASLNWSSSSEYFPRLVKLLD 80 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc--cCCC-cHHHHHHHccc-ccccccccCCHHHHHHHHHHHhc
Confidence 44555666666666667899999999999884332211 2333 22444444433 1110 01122233344443333
Q ss_pred cccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhHhhhHhhHhhhhHHHHHHHhh
Q 001487 494 PEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVN 555 (1069)
Q Consensus 494 ~~~~~~~l~~i~~~l~~~l~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~ 555 (1069)
+..|...++..+.......+..+...+..++-..+.... .-..-+..++..+..++++
T Consensus 81 ---~~~y~~~ll~Glv~S~G~~tesl~~~s~~AL~~~~~~~~-~~~~~~~~v~~~l~~il~~ 138 (193)
T PF12612_consen 81 ---LPEYRYSLLSGLVVSAGGLTESLVRASSAALLSYLRELS-DSPEELEQVLSDLLSILKE 138 (193)
T ss_pred ---cHHHHHHHHhHHHhcCCCCchhHHHHHHHHHHHHHHHhh-cCHHHHHHHHHHHHHHHHH
Confidence 235777788888777777777776666666666664321 1112344555555555554
No 365
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=49.39 E-value=7.2e+02 Score=32.34 Aligned_cols=267 Identities=14% Similarity=0.097 Sum_probs=140.5
Q ss_pred HhCCChHHHHHHHHHHHHHHcccc---HHHHHhHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHHHHHhhhccchh-hhc
Q 001487 240 LNNGNEATAQEALELLIELAGTEP---RFLRRQLVDVVGSMLQIAEA-ESLEEGTRHLAIEFVITLAEARERAPGM-MRK 314 (1069)
Q Consensus 240 l~~~~~~~~~~~~~~l~~l~~~~~---~~~~~~~~~l~~~l~~~~~~-~~~~~~~r~~a~~~l~~l~~~~~~~~~~-~~~ 314 (1069)
+++.|-++|.-..-|+.++.+.+. .+-..++.+|+.+++..+.. .+.....-..-...+.+++... ...-+ ...
T Consensus 59 L~h~d~dvrllvacCvseilRi~aPeaPy~~~~lkdIf~~~~~q~~gL~d~~sp~f~r~~~lletl~~~k-~~l~~~l~d 137 (1266)
T KOG1525|consen 59 LKHKDKDVRLLVACCVSEILRIYAPEAPYTDEQLKDIFQLILSQFSGLGDVESPYFKRYFYLLETLAKVK-FCLLMLLED 137 (1266)
T ss_pred hcCCCcChhHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHhH-HHheeeccc
Confidence 567788888888888888887552 22344677888777765421 1111111111223333443321 00000 012
Q ss_pred chhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCcchhhHHHHHHHHHHHcCCccchHHHHHHHHHhhcCCChHHH
Q 001487 315 LPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKH 394 (1069)
Q Consensus 315 ~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r 394 (1069)
..+++..++...+....+.... .+..-...+..+.... +.+-..++..+...+-.+....+
T Consensus 138 ~~e~~~~~f~~f~d~~~~~~~~-----------------~v~~~~~i~~~li~e~--d~v~~e~L~~ll~~lv~~~~~~~ 198 (1266)
T KOG1525|consen 138 CQELVHELFRTFFDLARKGHPK-----------------KVFNMLDIAIMLITEE--DTVQSELLDVLLENLVKPGRDTI 198 (1266)
T ss_pred hHHHHHHHHHHHHHHHhccccH-----------------HHHHHHHHHHHHHHhh--ccchHHHHHHHHHHhccCCCCcc
Confidence 2334444444444433222110 0111122222222221 23333444444444444444445
Q ss_pred HHHHHHHHHHHhhcHHHHHHhHHHHHH-HHHhhCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCC
Q 001487 395 HAALIALAQIAEGCAKVMVKNLEQVLS-MVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQ 473 (1069)
Q Consensus 395 ~aal~~l~~l~~~~~~~~~~~~~~i~~-~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~ 473 (1069)
..|...-..+++.|...+.+.+...+. .+...-. .-..++......+-.+.... ...+..++|.|..-|.. .
T Consensus 199 ~~a~~la~~li~~~a~~~~~~i~~f~~~~~~~~~s-~~~~~~~~~he~i~~L~~~~-----p~ll~~vip~l~~eL~s-e 271 (1266)
T KOG1525|consen 199 KEADKLASDLIERCADNLEDTIANFLNSCLTEYKS-RQSSLKIKYHELILELWRIA-----PQLLLAVIPQLEFELLS-E 271 (1266)
T ss_pred HHHHHHHHHHHHHhhhhhchhHHHHHHHHHhhccc-cccchhhHHHHHHHHHHHhh-----HHHHHHHHHHHHHHHhc-c
Confidence 555554455555555544444433322 2222211 11223333344444444332 23466788888888887 7
Q ss_pred ChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhh
Q 001487 474 NPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSS 534 (1069)
Q Consensus 474 ~~~v~~~a~~al~~l~~~~~~~~~~~~l~~i~~~l~~~l~~~~~~v~~~al~~l~~l~~~~ 534 (1069)
+..+|..|...++.++...... +..-.+.++...+..+.+.+..||...+.+...+....
T Consensus 272 ~~~~Rl~a~~lvg~~~~~~~~~-l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~ 331 (1266)
T KOG1525|consen 272 QEEVRLKAVKLVGRMFSDKDSQ-LSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNN 331 (1266)
T ss_pred hHHHHHHHHHHHHHHHhcchhh-hcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcC
Confidence 8999999999999998765533 33556788899999999999999999998888776653
No 366
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=49.17 E-value=2.1e+02 Score=26.19 Aligned_cols=47 Identities=17% Similarity=0.340 Sum_probs=31.8
Q ss_pred HHHHHHHHhhCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccC
Q 001487 417 EQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDD 471 (1069)
Q Consensus 417 ~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~ 471 (1069)
+.+-..+...|.++++.|+..|+.|+-.+- .+ ++...-+.|.+.+++
T Consensus 16 ~~l~~~~~~LL~~~d~~vQklAL~cll~~k---~~-----~l~pY~d~L~~Lldd 62 (141)
T PF07539_consen 16 DELYDALLRLLSSRDPEVQKLALDCLLTWK---DP-----YLTPYKDNLENLLDD 62 (141)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC---cH-----HHHhHHHHHHHHcCc
Confidence 345566778899999999999999997642 22 333333445555665
No 367
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.90 E-value=7.4e+02 Score=32.04 Aligned_cols=153 Identities=11% Similarity=0.183 Sum_probs=87.1
Q ss_pred chhhHHHHHHHHHHHHHhcccCC--CCchhhHHHHHHhhcCC---ChhHHHHHHHHHHHhhhhhhhhcc-hhHHHHHHHH
Q 001487 116 SAKSISKKLCDTVSELASNILPE--NGWPELLPFMFQCVSSD---SVKLQESAFLIFAQLSQYIGDTLT-PHLKHLHAVF 189 (1069)
Q Consensus 116 ~~~~vr~~~~~~i~~i~~~~~~~--~~w~~ll~~l~~~~~~~---~~~~r~~al~~l~~l~~~~~~~~~-~~~~~l~~~l 189 (1069)
+...+|...-.++-.|....+.. ..|+.+++-+-...... .......+..+|+-++.++-..+. ..+..++..+
T Consensus 854 ~~~evr~~sl~~l~silet~ge~ll~~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~~lidtl 933 (1610)
T KOG1848|consen 854 RGVEVRISSLEALVSILETVGEHLLHGWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCILDLIDTL 933 (1610)
T ss_pred ccceeeHHHHHHHHHHHhccchhhccccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHHHHHHHH
Confidence 34455555445555555433221 34998888887666554 345556678888888776544332 2455566666
Q ss_pred HHhhcCCCChHHHHHHHHHH---HHHHHh-hCC-cc-----------------hHhHHHhhHHHHHHHHHHHHhCCChHH
Q 001487 190 LNCLTNSNNPDVKIAALNAV---INFIQC-LTS-SA-----------------DRDRFQDLLPLMMRTLTESLNNGNEAT 247 (1069)
Q Consensus 190 ~~~l~~~~~~~vr~~a~~~l---~~l~~~-~~~-~~-----------------~~~~~~~~~~~~l~~l~~~l~~~~~~~ 247 (1069)
...-....+..+...|+..+ +.++.. ... .+ .......++=.++..+..+..+...++
T Consensus 934 ~~fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~ss~~~~~~l~e~lwi~ll~~L~~~~~dsr~eV 1013 (1610)
T KOG1848|consen 934 LVFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYSSMKSKEILPEVLWIMLLVHLADLCEDSRAEV 1013 (1610)
T ss_pred HHHHhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcccccchhhhhhHHHHHHHHHHHHHhccchHHH
Confidence 55444333555655655444 333332 110 00 011112233344555666677778899
Q ss_pred HHHHHHHHHHHHccccHHHHH
Q 001487 248 AQEALELLIELAGTEPRFLRR 268 (1069)
Q Consensus 248 ~~~~~~~l~~l~~~~~~~~~~ 268 (1069)
|..|++.|-.+...++..+++
T Consensus 1014 RngAvqtlfri~~Shg~~l~~ 1034 (1610)
T KOG1848|consen 1014 RNGAVQTLFRIFNSHGSKLGT 1034 (1610)
T ss_pred hhhHHHHHHHHHhhhcccCCh
Confidence 999999999988877766655
No 368
>PF12243 CTK3: CTD kinase subunit gamma CTK3
Probab=47.77 E-value=87 Score=28.49 Aligned_cols=77 Identities=12% Similarity=0.175 Sum_probs=51.2
Q ss_pred HHhhCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCccc--ccCc
Q 001487 423 VLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEI--LTPY 500 (1069)
Q Consensus 423 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~--~~~~ 500 (1069)
+++.|+-....++.+|..+|.. ...-+.+++.+++.+.+ ++-..|....+++..+++.+.... -.+|
T Consensus 13 ~L~~L~aS~qSi~kaa~fAlk~----------~~~~edL~~cIle~le~-~~lN~R~nI~~fID~l~e~~~~~~~~~~~Y 81 (139)
T PF12243_consen 13 LLRRLNASQQSIQKAAQFALKN----------RDMEEDLWSCILEQLEK-ENLNTRINIFYFIDSLCESSQKSKKYNYPY 81 (139)
T ss_pred HHHHcchhHHHHHHHHHHHHHc----------cccHHHHHHHHHHHHhc-cchhhHHHHHHHHHHHHHHHHhcccccchh
Confidence 4445655666677777777644 13356778888888888 788889999999999988654332 3466
Q ss_pred hHHHHHHHHH
Q 001487 501 LDGIVSKLLV 510 (1069)
Q Consensus 501 l~~i~~~l~~ 510 (1069)
...+-..|..
T Consensus 82 v~~l~~dL~~ 91 (139)
T PF12243_consen 82 VSMLQRDLPR 91 (139)
T ss_pred HHHHHHHHHH
Confidence 5554433333
No 369
>smart00145 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain). PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation.
Probab=46.69 E-value=1.5e+02 Score=28.64 Aligned_cols=79 Identities=20% Similarity=0.190 Sum_probs=45.7
Q ss_pred hHHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc-CCCHHHHHHHHHHHHhhcccCCCCcccCCCHH
Q 001487 21 SAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLH 99 (1069)
Q Consensus 21 ~~~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~~p~~~~~~L~~il~~-~~~~~~R~~a~i~L~~~i~~~~~~~w~~l~~~ 99 (1069)
++.+..+|.+..=.+....+++...|..+..-+| ...+++|.. -.++.||+.|...|++ ++++
T Consensus 43 p~aL~~~L~sv~W~~~~e~~e~~~ll~~W~~~~~----~~aL~LL~~~~~~~~Vr~yAV~~L~~------------~~d~ 106 (184)
T smart00145 43 PKALPKFLLSVNWSDADEVAQALSLLKKWAPLDP----EDALELLSPKFPDPFVRAYAVERLES------------ASDE 106 (184)
T ss_pred hHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCCCH----HHHHHHhCccCCCHHHHHHHHHHHHh------------CCHH
Confidence 3444445543333445556667666666654233 233455543 3467888888877755 3455
Q ss_pred HHHHHHHHHHHHHhhc
Q 001487 100 TQSSLKSMLLQSIQLE 115 (1069)
Q Consensus 100 ~~~~i~~~ll~~l~~e 115 (1069)
.......+|.|+|.-|
T Consensus 107 ~l~~yLpQLVQaLr~E 122 (184)
T smart00145 107 ELLLYLLQLVQALKYE 122 (184)
T ss_pred HHHHHHHHHHHHHHcc
Confidence 6666666777777665
No 370
>PF14838 INTS5_C: Integrator complex subunit 5 C-terminus
Probab=46.55 E-value=5.8e+02 Score=30.45 Aligned_cols=85 Identities=16% Similarity=0.177 Sum_probs=42.3
Q ss_pred hcCCCChHHHHHHHHHHHHHHHhhCCcchHhHHHhhHHHHHHHHHHHHhCCChH----HHHHHHHHHHHHHccccHHHHH
Q 001487 193 LTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEA----TAQEALELLIELAGTEPRFLRR 268 (1069)
Q Consensus 193 l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~----~~~~~~~~l~~l~~~~~~~~~~ 268 (1069)
|... +.++-..+++.|..+--.-.........-.+....+..++.++...+.. ....+...|..++...+....-
T Consensus 319 L~~~-~~~~~~~~v~lL~~l~~~~~~~~~~~~~L~l~~~~V~yFF~~l~~~~~~~~~~~~~~~~~lL~~l~~~s~~a~~~ 397 (696)
T PF14838_consen 319 LLHS-DPEVAHAAVKLLDLLPLPEKAPLSPSLLLKLSRALVKYFFLCLHEKDVSGKQEGLKRCCQLLSRLCSYSPAARKA 397 (696)
T ss_pred HcCC-ChhHHHHHHHHHHhCCCccccCCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHccCchHHHH
Confidence 3444 6667666666554332111001122333344455667777776654332 2335566666666655554444
Q ss_pred hHHHHHHHHH
Q 001487 269 QLVDVVGSML 278 (1069)
Q Consensus 269 ~~~~l~~~l~ 278 (1069)
.+..+++..+
T Consensus 398 vLr~LlE~al 407 (696)
T PF14838_consen 398 VLRELLEGAL 407 (696)
T ss_pred HHHHHHHHHH
Confidence 4555555433
No 371
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=46.47 E-value=4.1e+02 Score=28.70 Aligned_cols=76 Identities=18% Similarity=0.271 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHccccHHHHHhHHH-------HHHHHHHHhc-CCCcc-------hHHHHH
Q 001487 229 LPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVD-------VVGSMLQIAE-AESLE-------EGTRHL 293 (1069)
Q Consensus 229 ~~~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~-------l~~~l~~~~~-~~~~~-------~~~r~~ 293 (1069)
+..-++.+...+++........++.++.+++...+......+-. .++.++..-. ..+.. ..+|..
T Consensus 54 L~~~~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~ 133 (330)
T PF11707_consen 54 LQNHLKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTN 133 (330)
T ss_pred HHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHH
Confidence 33346667777777777788899999999998443322222211 1222221110 00010 289999
Q ss_pred HHHHHHHHHHh
Q 001487 294 AIEFVITLAEA 304 (1069)
Q Consensus 294 a~~~l~~l~~~ 304 (1069)
.+.||.++.+.
T Consensus 134 fI~F~Lsfl~~ 144 (330)
T PF11707_consen 134 FIRFWLSFLSS 144 (330)
T ss_pred HHHHHHHHHcc
Confidence 99999999884
No 372
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=45.63 E-value=3e+02 Score=26.89 Aligned_cols=150 Identities=15% Similarity=0.148 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCC-CCchhhHHHHHHhhcCCC-----hhHHHHHHHHHHHhhh
Q 001487 99 HTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPE-NGWPELLPFMFQCVSSDS-----VKLQESAFLIFAQLSQ 172 (1069)
Q Consensus 99 ~~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~~-~~w~~ll~~l~~~~~~~~-----~~~r~~al~~l~~l~~ 172 (1069)
+....+...+++... |.-..+|..++.++..+.....+. ...| -.+.+...+..+. +..-..++..+..+..
T Consensus 3 ~~~~~~~~~llrqa~-EKiDrvR~~A~~~l~~ll~~~~~~~~~ip-~~~~L~~i~~~~~~~~~~w~~~~~~F~~l~~LL~ 80 (193)
T PF12612_consen 3 ELVQQIIGGLLRQAA-EKIDRVREVAGKCLQRLLHSQDPTIPHIP-HREELQDIFPSESEASLNWSSSSEYFPRLVKLLD 80 (193)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCccccCCC-cHHHHHHHcccccccccccCCHHHHHHHHHHHhc
Confidence 334444445555444 467789999999999998543331 1122 3455555544322 2222222322222221
Q ss_pred hhhhhcchhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhCCcchHhHHHhhHHHHHHHHHHHHhCCChHHHHHHH
Q 001487 173 YIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEAL 252 (1069)
Q Consensus 173 ~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~ 252 (1069)
+..+...++..+....... ++.+.+.+..+|..++...+. .......++..++..+.... .+..+....+
T Consensus 81 -----~~~y~~~ll~Glv~S~G~~-tesl~~~s~~AL~~~~~~~~~--~~~~~~~v~~~l~~il~~~~--~~dRv~vP~l 150 (193)
T PF12612_consen 81 -----LPEYRYSLLSGLVVSAGGL-TESLVRASSAALLSYLRELSD--SPEELEQVLSDLLSILKENL--RNDRVVVPLL 150 (193)
T ss_pred -----cHHHHHHHHhHHHhcCCCC-chhHHHHHHHHHHHHHHHhhc--CHHHHHHHHHHHHHHHHHhC--CCCCeeecHH
Confidence 1235556666666666665 677888888888877764311 22333344444444444322 2333444555
Q ss_pred HHHHHHHc
Q 001487 253 ELLIELAG 260 (1069)
Q Consensus 253 ~~l~~l~~ 260 (1069)
+.+..+.+
T Consensus 151 ~tl~~Ll~ 158 (193)
T PF12612_consen 151 KTLDFLLS 158 (193)
T ss_pred HHHHHHHh
Confidence 55555544
No 373
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=45.55 E-value=2.2e+02 Score=25.36 Aligned_cols=90 Identities=19% Similarity=0.217 Sum_probs=53.8
Q ss_pred hhHHHHHHHHHHHcCCccchHHHHHHHHHhh---cCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHh--hCC--
Q 001487 356 SVGQECLDRLAIALGGNTIVPVASEQLPAYL---AAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLN--SFR-- 428 (1069)
Q Consensus 356 ~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l---~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~i~~~l~~--~l~-- 428 (1069)
......+..++...-...-...++..+...+ ...+|+...-|+..+..+....+..+...+..-...|.. .++
T Consensus 18 gp~~~~l~eIa~~t~~~~~~~~I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~~~~~~~~~~~~I~~l~~f~~~ 97 (125)
T PF01417_consen 18 GPPGKLLAEIAQLTYNSKDCQEIMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSERFVDELRDHIDIIRELQDFQYV 97 (125)
T ss_dssp S--HHHHHHHHHHTTSCHHHHHHHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HHHHHHHHHTHHHHHGGGG---B
T ss_pred CcCHHHHHHHHHHHhccccHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHhhcceeecc
Confidence 3445566677655432355667888888887 567899999999999999887776555544433322221 121
Q ss_pred CC-----ChhHHHHHHHHHHHh
Q 001487 429 DP-----HPRVRWAAINAIGQL 445 (1069)
Q Consensus 429 d~-----~~~vr~~a~~~l~~l 445 (1069)
|+ ...||..|-..+..+
T Consensus 98 d~~g~d~~~~VR~~A~~i~~lL 119 (125)
T PF01417_consen 98 DPKGKDQGQNVREKAKEILELL 119 (125)
T ss_dssp BTTSTBHHHHHHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHHHHh
Confidence 22 124777776665543
No 374
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.97 E-value=8.8e+02 Score=31.84 Aligned_cols=82 Identities=12% Similarity=0.175 Sum_probs=59.4
Q ss_pred hHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhHhhhHhhHhhhhHHHHHHHhhccCccccchhhHHHHHHHHHHHhhC
Q 001487 501 LDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVG 580 (1069)
Q Consensus 501 l~~i~~~l~~~l~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~ 580 (1069)
++++...++....+.+...|-.|+..+..+....|+...+.+++++|+|.+++.+.+ ..+...+-+.+..+-...|
T Consensus 1539 ~~pl~~k~l~~trss~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL~ED~~----~~Ve~~~q~li~q~e~~lG 1614 (1621)
T KOG1837|consen 1539 LKPLNQKILKKTRSSSRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAELMEDED----DEVECLCQKLIRQLEEVLG 1614 (1621)
T ss_pred hHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHHHhhhH----HHHHHHHHHHHHHHHHHhc
Confidence 444445555555666788999999999999999999999999999999999987632 2344445555666666667
Q ss_pred hhhhhhh
Q 001487 581 KDKFRDD 587 (1069)
Q Consensus 581 ~~~~~~~ 587 (1069)
+.|..|
T Consensus 1615 -E~l~~y 1620 (1621)
T KOG1837|consen 1615 -EPLQSY 1620 (1621)
T ss_pred -hhhhhc
Confidence 555443
No 375
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=40.55 E-value=4.6e+02 Score=27.56 Aligned_cols=72 Identities=13% Similarity=0.055 Sum_probs=48.9
Q ss_pred HHHHHHHhhCCCCChh-HHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhh
Q 001487 418 QVLSMVLNSFRDPHPR-VRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSE 490 (1069)
Q Consensus 418 ~i~~~l~~~l~d~~~~-vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~ 490 (1069)
.++..+...++..++. .-..||.-++++.+..+.....-.-...=..++..+++ ++++|+-.|..++..++.
T Consensus 356 ~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~k~~im~L~nh-~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 356 EIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYGVKEIIMNLINH-DDDDVKFEALQALQTCIS 428 (432)
T ss_pred HHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhhHHHHHHHhcC-CCchhhHHHHHHHHHHHh
Confidence 5677777888777766 34567888888887665432111112344556777888 899999999999877654
No 376
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=40.23 E-value=1.9e+02 Score=25.19 Aligned_cols=83 Identities=8% Similarity=0.077 Sum_probs=48.0
Q ss_pred CChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHH
Q 001487 430 PHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLL 509 (1069)
Q Consensus 430 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~i~~~l~ 509 (1069)
..+.|...+.||+... .+...++..+.+.+.. ..+.-+..+...+..++.+++...-..+...+.+.+.
T Consensus 17 S~~~I~~lt~~a~~~~----------~~a~~iv~~i~~~i~~-~~~~~KL~~LYL~dsIvkn~~~~~~~~~~~~~~~~f~ 85 (114)
T cd03562 17 SQPSIQTLTKLAIENR----------KHAKEIVEIIEKHIKK-CPPEQKLPLLYLLDSIVKNVGRKYKEFFSEFLVPLFL 85 (114)
T ss_pred cHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHHHcccchHHHHHHHHHHHHH
Confidence 4455555555555432 3556777777777776 5567778889999999988764321111222234444
Q ss_pred HHhhcCChhHHHHH
Q 001487 510 VLLQNGKQMVQEGA 523 (1069)
Q Consensus 510 ~~l~~~~~~v~~~a 523 (1069)
......++.+|...
T Consensus 86 ~~~~~~~~~~r~kl 99 (114)
T cd03562 86 DAYEKVDEKTRKKL 99 (114)
T ss_pred HHHHhCCHHHHHHH
Confidence 44444455555443
No 377
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=39.59 E-value=1.5e+02 Score=29.40 Aligned_cols=78 Identities=12% Similarity=0.124 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhHhhhchhHHh
Q 001487 376 PVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQN 455 (1069)
Q Consensus 376 ~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~ 455 (1069)
+.+.+.+.++..+++.-.|.+|+.+.-...+. ...+.+...+...+.|++..|+.+..|+|..+++.-++.+ .
T Consensus 114 ~~~~~~l~~W~~s~~~W~rR~ai~~~l~~~~~------~~~~~l~~~~~~~~~d~e~fI~KAiGW~LRe~~k~d~~~V-~ 186 (208)
T cd07064 114 PEFEPVMDEWSTDENFWLRRTAILHQLKYKEK------TDTDLLFEIILANLGSKEFFIRKAIGWALREYSKTNPDWV-R 186 (208)
T ss_pred hhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHc------cCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhccCHHHH-H
Q ss_pred hhhhh
Q 001487 456 QFHPQ 460 (1069)
Q Consensus 456 ~~~~~ 460 (1069)
.|+..
T Consensus 187 ~fl~~ 191 (208)
T cd07064 187 DFVAA 191 (208)
T ss_pred HHHHH
No 378
>PF14961 BROMI: Broad-minded protein
Probab=38.99 E-value=4.8e+02 Score=33.07 Aligned_cols=136 Identities=14% Similarity=0.196 Sum_probs=81.9
Q ss_pred HHHHHHhhcCCCh-hHHHHHHHHHHHhhhhhhhhc-chhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhCCcchH
Q 001487 145 LPFMFQCVSSDSV-KLQESAFLIFAQLSQYIGDTL-TPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADR 222 (1069)
Q Consensus 145 l~~l~~~~~~~~~-~~r~~al~~l~~l~~~~~~~~-~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~ 222 (1069)
++.+.+.+....| ++|..|+..|..+.-. +-+ .+..+.+...+..+|.|+ ++.+...+++........-+-....
T Consensus 163 lq~i~d~ld~~~P~evR~eAlq~Lc~~p~S--DVls~E~W~~L~~~L~~~LsDp-D~~is~~~L~f~Ak~fssSpl~~tr 239 (1296)
T PF14961_consen 163 LQLIADKLDPGQPKEVRLEALQILCSAPPS--DVLSCESWSVLRENLTDALSDP-DPEISDASLRFHAKMFSSSPLNMTR 239 (1296)
T ss_pred HHHHHHhcCCCCchHHHHHHHHHHhcCChh--hccccccHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhccCCchhhhH
Confidence 3455555554444 7888888888766543 111 247888889999999998 9999999999888888764333334
Q ss_pred hHHHhhHHHHHHHHHHHH----------hCCCh--HHHHHHHHHHHHHHccccH----HHHHhHHHHHHHHHHHhcC
Q 001487 223 DRFQDLLPLMMRTLTESL----------NNGNE--ATAQEALELLIELAGTEPR----FLRRQLVDVVGSMLQIAEA 283 (1069)
Q Consensus 223 ~~~~~~~~~~l~~l~~~l----------~~~~~--~~~~~~~~~l~~l~~~~~~----~~~~~~~~l~~~l~~~~~~ 283 (1069)
+.+..++..+...+...- .-..+ ...-..+.++.++-+..++ +-.+++.++++-.+.++..
T Consensus 240 EiYtsL~~~l~~~Fls~~~~lptl~~giDi~~~~~~rLLk~vrLlneyq~E~ps~WiRhpeK~mEeIVEsTLsLLs~ 316 (1296)
T PF14961_consen 240 EIYTSLANHLESYFLSQKNSLPTLSSGIDITFPDIERLLKKVRLLNEYQKEVPSFWIRHPEKYMEEIVESTLSLLST 316 (1296)
T ss_pred HHHHHHHHHHHHHHHhccccCccccccccccCccHHHHHHHHHHHHHHHHhcchhhhcCcHHHHHHHHHHHHHHhcc
Confidence 445554444433221100 00011 2223345566665544444 3467788888888877644
No 379
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=37.82 E-value=51 Score=19.90 Aligned_cols=14 Identities=43% Similarity=0.582 Sum_probs=11.2
Q ss_pred HHHhhhHHHHHHHh
Q 001487 939 VRQAAVYGLGVCAE 952 (1069)
Q Consensus 939 vr~~a~~~lg~l~~ 952 (1069)
||..|+++||.+-.
T Consensus 1 VR~~Aa~aLg~igd 14 (27)
T PF03130_consen 1 VRRAAARALGQIGD 14 (27)
T ss_dssp HHHHHHHHHGGG-S
T ss_pred CHHHHHHHHHHcCC
Confidence 68899999998866
No 380
>PF00613 PI3Ka: Phosphoinositide 3-kinase family, accessory domain (PIK domain); InterPro: IPR001263 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The role of the accessory domain of phosphoinositide 3-kinase (PI3-kinase) is unclear. It may be involved in substrate presentation [].; GO: 0004428 inositol or phosphatidylinositol kinase activity; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A ....
Probab=36.94 E-value=96 Score=30.01 Aligned_cols=79 Identities=24% Similarity=0.209 Sum_probs=45.3
Q ss_pred hHHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc-CCCHHHHHHHHHHHHhhcccCCCCcccCCCHH
Q 001487 21 SAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLH 99 (1069)
Q Consensus 21 ~~~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~~p~~~~~~L~~il~~-~~~~~~R~~a~i~L~~~i~~~~~~~w~~l~~~ 99 (1069)
++.|..+|.++--.+.+...++.+.|..+..-+|. ..+++|.. -.++.||++|...|++ ++++
T Consensus 44 p~aL~~~L~sv~w~~~~~~~~~~~ll~~W~~~~p~----~AL~LL~~~f~~~~VR~yAv~~L~~------------~~d~ 107 (184)
T PF00613_consen 44 PEALPKLLRSVDWWNPEEVSEAYQLLLQWPPISPE----DALELLSPNFPDPFVRQYAVRRLES------------LSDE 107 (184)
T ss_dssp GGGHHHHHTTSTTTSHHHHHHHHHHHHTSHCTTHH----HHHHCTSTT---HHHHHHHHHHHCT------------S-HH
T ss_pred chHHHHHHhhCCCCchhhHHHHHHHHHcCCCCCHH----HHHHHHHhhccHHHHHHHHHHHHHH------------cCch
Confidence 34444555544445556666777767666553332 23455543 2347888888877744 3466
Q ss_pred HHHHHHHHHHHHHhhc
Q 001487 100 TQSSLKSMLLQSIQLE 115 (1069)
Q Consensus 100 ~~~~i~~~ll~~l~~e 115 (1069)
....+...|.|+|.-|
T Consensus 108 ~l~~yLpQLVQaLr~e 123 (184)
T PF00613_consen 108 ELLFYLPQLVQALRYE 123 (184)
T ss_dssp HHHHHHHHHHHHGGGS
T ss_pred HHHHHHHHHHHHheec
Confidence 6667777777777765
No 381
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=36.91 E-value=5.8e+02 Score=27.72 Aligned_cols=53 Identities=15% Similarity=0.231 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHhhccCCcCChHHHHHHHHhHHHHHH
Q 001487 685 LEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLR 742 (1069)
Q Consensus 685 ~~~k~~a~~~l~~l~~~~~~~~~p~~~~~~~~l~~~l~~~~~~~ir~~a~~~l~~l~~ 742 (1069)
..+|..|.+.++.+.++.+. ....-+..=+.+++|. .-.||..|++-|+.++.
T Consensus 38 ~k~k~lasq~ip~~fk~fp~----la~~a~da~~d~~ed~-d~~ir~qaik~lp~fc~ 90 (460)
T KOG2213|consen 38 SKEKRLASQFIPRFFKHFPS----LADEAIDAQLDLCEDD-DVGIRRQAIKGLPLFCK 90 (460)
T ss_pred hHHHHHHHHHHHHHHhhCch----hhhHHHHhhhcccccc-chhhHHHHHhccchhcc
Confidence 45788888888888765221 2244445555566654 78899999999987764
No 382
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=36.57 E-value=6.3e+02 Score=27.96 Aligned_cols=118 Identities=14% Similarity=0.098 Sum_probs=69.8
Q ss_pred hhHHHHHHHHhC---CChHHHHHHHHHhcCCChHH--HHHHHHHHHHhhhc-CchHHH----HHHHHHHccCCCHHHHHH
Q 001487 7 HLQQSQLAVILG---PDSAPFETLISHLMSTSNEQ--RSEAELLFNLCKQQ-DPDSLT----LKLAHLLQRSPHPEARAM 76 (1069)
Q Consensus 7 ~~~~~~~~~~~~---~~~~~l~~ll~~~~s~d~~~--r~~A~~~L~~~~~~-~p~~~~----~~L~~il~~~~~~~~R~~ 76 (1069)
+.+-+.+|+=+- -+...+..+|.-+++|+.+. |-+|-..|.++... |-+... ..++.+......++..+.
T Consensus 162 ~aV~~evAq~LCD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~aeN~d~va~~~~~~Il~lAK~~e~~e~aR~ 241 (832)
T KOG3678|consen 162 AAVGREVAQGLCDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILVAENRDRVARIGLGVILNLAKEREPVELARS 241 (832)
T ss_pred hhhhHHHHHhhhhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhhhhhHHhhccchhhhhhhhhcCcHHHHHH
Confidence 455556665211 13457777888899998775 88998888886432 333321 223333333666777777
Q ss_pred HHHHHHhhcccCCCCcccCCCHHHHHHHH-----HHHHHHHhhcchhhHHHHHHHHHHHHHhc
Q 001487 77 AAVLLRKLLTRDDSFLWPRLSLHTQSSLK-----SMLLQSIQLESAKSISKKLCDTVSELASN 134 (1069)
Q Consensus 77 a~i~L~~~i~~~~~~~w~~l~~~~~~~i~-----~~ll~~l~~e~~~~vr~~~~~~i~~i~~~ 134 (1069)
.+-+|.++++.. ++....+. +.++-.... .++.+-+..+.+++.++-+
T Consensus 242 ~~~il~~mFKHS---------eet~~~Lvaa~~lD~vl~~~rR-t~P~lLRH~ALAL~N~~L~ 294 (832)
T KOG3678|consen 242 VAGILEHMFKHS---------EETCQRLVAAGGLDAVLYWCRR-TDPALLRHCALALGNCALH 294 (832)
T ss_pred HHHHHHHHhhhh---------HHHHHHHHhhcccchheeeccc-CCHHHHHHHHHHhhhhhhh
Confidence 777888887653 23222111 122223333 4677777778888887765
No 383
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=36.35 E-value=3.7e+02 Score=25.23 Aligned_cols=100 Identities=12% Similarity=0.083 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHhhcCCC-ChHHHHHHHHHHHHHHHhhCCcchHhHHHhhHHH-HHHHH
Q 001487 159 LQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSN-NPDVKIAALNAVINFIQCLTSSADRDRFQDLLPL-MMRTL 236 (1069)
Q Consensus 159 ~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~-~l~~l 236 (1069)
....++.++..+.++.--......+.++..+....+... +..+...++..|-+++..- ...+...-.. -++.+
T Consensus 33 ~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~Vl~S-----~~ly~~V~~evt~~~L 107 (160)
T PF11841_consen 33 ILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILESIVLNS-----PKLYQLVEQEVTLESL 107 (160)
T ss_pred HHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHHHHHhCC-----HHHHHHHhccCCHHHH
Confidence 334456666666664211111123334444444444331 5678888988888888752 1212111111 13445
Q ss_pred HHHHhCCChHHHHHHHHHHHHHHcccc
Q 001487 237 TESLNNGNEATAQEALELLIELAGTEP 263 (1069)
Q Consensus 237 ~~~l~~~~~~~~~~~~~~l~~l~~~~~ 263 (1069)
...++..+++.+..++.++..+....+
T Consensus 108 i~hLq~~~~~iq~naiaLinAL~~kA~ 134 (160)
T PF11841_consen 108 IRHLQVSNQEIQTNAIALINALFLKAD 134 (160)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhcCC
Confidence 555667788888888888887765544
No 384
>KOG1086 consensus Cytosolic sorting protein/ADP-ribosylation factor effector GGA [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.38 E-value=6.3e+02 Score=27.66 Aligned_cols=69 Identities=14% Similarity=0.162 Sum_probs=46.7
Q ss_pred HHhhcCCChhHHHHHHHHHHHhhhhhhhhcch------hHHHHHHHHH-HhhcCCCChHHHHHHHHHHHHHHHhhC
Q 001487 149 FQCVSSDSVKLQESAFLIFAQLSQYIGDTLTP------HLKHLHAVFL-NCLTNSNNPDVKIAALNAVINFIQCLT 217 (1069)
Q Consensus 149 ~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~------~~~~l~~~l~-~~l~~~~~~~vr~~a~~~l~~l~~~~~ 217 (1069)
..-++|+....-..|+.+|..+.+..++.|.. +++.++..+. +++.+-.+..|+...++.|..+.-+++
T Consensus 51 aHKiqSPqe~EAl~altvLe~cmkncGekfH~evgkfrFLNELIkvvsPKYlG~~tSekvKtkiIelLfsWtv~lp 126 (594)
T KOG1086|consen 51 AHKIQSPQEWEALQALTVLEYCMKNCGEKFHEEVGKFRFLNELIKVVSPKYLGSRTSEKVKTKIIELLFSWTVSLP 126 (594)
T ss_pred HhhcCChhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCchhcchhhhHHHHHHHHHHHhhheecCc
Confidence 34466666555556777888888887776543 5566666554 355554577888889998888776654
No 385
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=35.01 E-value=50 Score=20.39 Aligned_cols=14 Identities=36% Similarity=0.309 Sum_probs=12.3
Q ss_pred hHHHHHHHHHHHHH
Q 001487 391 WQKHHAALIALAQI 404 (1069)
Q Consensus 391 ~~~r~aal~~l~~l 404 (1069)
|.+|+.+..+||.+
T Consensus 1 ~~vR~~aa~aLg~~ 14 (30)
T smart00567 1 PLVRHEAAFALGQL 14 (30)
T ss_pred CHHHHHHHHHHHHc
Confidence 67899999999987
No 386
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=34.09 E-value=5.2e+02 Score=26.31 Aligned_cols=93 Identities=18% Similarity=0.310 Sum_probs=56.5
Q ss_pred HHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhCCcch-------------------------HhHHHhhHHHHHHHH
Q 001487 182 LKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSAD-------------------------RDRFQDLLPLMMRTL 236 (1069)
Q Consensus 182 ~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~-------------------------~~~~~~~~~~~l~~l 236 (1069)
+..+-..+++.+.+. ++.||..+++.+..++........ ...+..=-..++..|
T Consensus 41 ~~~lK~~Il~~~~~~-~~gvk~~~iKFle~vIl~qs~~~~~~~~~~~~~~d~SL~~vp~~Hp~l~~~~Le~Ea~~lL~~L 119 (239)
T PF11935_consen 41 MNELKDRILSLWDSE-NPGVKLAAIKFLERVILVQSPGSSDSPPRRGSPNDFSLSSVPPNHPLLNPQQLEAEANGLLDRL 119 (239)
T ss_dssp HHHHHHHHHHGGGSS-SHHHHHHHHHHHHHHHHHTS---TTS---GGGTTS--GGGS-TT-SSS-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCC-CchHHHHHHHHHHHHHHhcCCCCCCCccccccccCCCHHHcCCCCCcCCHHHHHHHHHHHHHHH
Confidence 445555666677776 889999999999988876432110 000111011345555
Q ss_pred HHHHhCC--ChHHHHHHHHHHHHHHccccHHHHHhHHHHHH
Q 001487 237 TESLNNG--NEATAQEALELLIELAGTEPRFLRRQLVDVVG 275 (1069)
Q Consensus 237 ~~~l~~~--~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~ 275 (1069)
...+.++ +......++.+|..+++..|.++...++.+..
T Consensus 120 l~~l~~~~i~~~~~~a~insL~~Iak~RP~~~~~Il~~ll~ 160 (239)
T PF11935_consen 120 LDVLQSPHISSPLLTAIINSLSNIAKQRPQFMSRILPALLS 160 (239)
T ss_dssp HHHHC-TT--HHHHHHHHHHHHHHHHHSGGGHHHHHHHHHH
T ss_pred HHHHhhcccchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 6555544 35677788889999998888776654444443
No 387
>PF10350 DUF2428: Putative death-receptor fusion protein (DUF2428); InterPro: IPR019442 This domain is found in a family of proteins of unknown function that are conserved from plants to humans. Several of these proteins have been annotated as being HEAT repeat-containing proteins while others are designated as death-receptor interacting proteins, but neither of these has yet been confirmed. Aberrations in the genes encoding these proteins have been observed in benign thyroid adenomas [].
Probab=33.63 E-value=5.5e+02 Score=26.46 Aligned_cols=77 Identities=12% Similarity=0.118 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHhhhchhhhHHHHHhhhhhhhcCCCC-------HHHHHHHHHHHHHHHhH--hhhhhhhhhHhHHHHHHh
Q 001487 860 VGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKT-------AEERRIAICIFDDVAEQ--CREAALKYYETYLPFLLE 930 (1069)
Q Consensus 860 ~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~-------~~~r~~a~~~l~~l~~~--~~~~~~~~~~~l~~~ll~ 930 (1069)
...++..+...-+..-.+.+...+..++...+.... ..-+.-|+.+|..++.. ++..+.+|+.+.+...++
T Consensus 168 LP~~i~aiL~ae~~~~~~ll~~~~~~Ll~ia~~~~~~~~~~~~d~~qVHAlNiLr~if~ds~L~~~~~~yi~~~l~lai~ 247 (255)
T PF10350_consen 168 LPFLILAILSAEPSNSRPLLHRTMKSLLEIAKSPSTQHEDEKSDLPQVHALNILRAIFRDSKLSEDVSPYIEDALILAIK 247 (255)
T ss_pred HHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCcccccccccchHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHH
Confidence 345666666665554335566666666665543222 23466789999999876 456677899998888888
Q ss_pred hccCCC
Q 001487 931 ACNDEN 936 (1069)
Q Consensus 931 ~l~~~~ 936 (1069)
++.+++
T Consensus 248 ~f~s~~ 253 (255)
T PF10350_consen 248 GFSSPD 253 (255)
T ss_pred hCCCcc
Confidence 887664
No 388
>KOG3687 consensus Tuberin - Rap/ran-GTPase-activating protein [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=33.35 E-value=1e+03 Score=29.45 Aligned_cols=466 Identities=13% Similarity=0.119 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhc--CchHHHHHHHHHHcc----CCCHHHHHHHHHHHHhhcccCCCCcccCCCHHHHHHHHHHHHH
Q 001487 37 EQRSEAELLFNLCKQQ--DPDSLTLKLAHLLQR----SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQ 110 (1069)
Q Consensus 37 ~~r~~A~~~L~~~~~~--~p~~~~~~L~~il~~----~~~~~~R~~a~i~L~~~i~~~~~~~w~~l~~~~~~~i~~~ll~ 110 (1069)
+.|.+-..++-+-.+. ..+..+..|++...+ +.+.+.|+.+.-++|+++... -+....+|..+++
T Consensus 42 ~~R~rmi~~i~~~~k~~~~~e~aI~~lw~~~~DlI~pN~~Ae~R~~vl~l~kR~v~TQ---------~~~l~I~R~~FF~ 112 (1697)
T KOG3687|consen 42 NNRIRMIGQICEVAKTKKFEEHAIEALWKAVADLIQPNRTAEARHAVLALLKRIVQTQ---------GERLGILRALFFK 112 (1697)
T ss_pred HHHHHHHHHHHhhHhhhcccHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHhhh---------hhHHHHHHHHHHH
Q ss_pred HHhhcchhhHHHHHHHHHHHHHhcccCCCCchhhH-HHHHHhhcCCChhHHHHHHHHHHHhhhhhhhhcchhHHHHHHHH
Q 001487 111 SIQLESAKSISKKLCDTVSELASNILPENGWPELL-PFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVF 189 (1069)
Q Consensus 111 ~l~~e~~~~vr~~~~~~i~~i~~~~~~~~~w~~ll-~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l 189 (1069)
.+.+.+...--+...+.+..+...--.-..+.+=+ +++..++... ....-+.++..+.+.-+.++..++-.++-..
T Consensus 113 vI~~~p~~edL~~rLe~L~~LTDnG~~It~~Ee~iG~f~l~W~~~~---l~~~~L~~lvnl~kfn~~~lD~~i~~l~vq~ 189 (1697)
T KOG3687|consen 113 VIKDYPSNEDLHERLEVLKALTDNGRHITYLEEELGDFVLQWMDVG---LSSEFLLVLVNLVKFNSCYLDEYIARLMVQM 189 (1697)
T ss_pred HHhcCcchHHHHHHHHHHHHHhhCCccccchHHHHHHHHHHHHHhh---cccHHHHHHHHHHHhcccchhHHHHHHHHHH
Q ss_pred HHhhcCCCChHHHHHHHHHHHHHHHhhCCcchHhHHHhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHccc-------
Q 001487 190 LNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTE------- 262 (1069)
Q Consensus 190 ~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~~~------- 262 (1069)
.=.+-.-...+|-...+..+...+.+. -.-.+-+|+++..++...+ .-..-..+++++..+..+.
T Consensus 190 ~c~lc~~t~~~i~~~~l~~l~~v~~y~------~~P~e~lpQ~I~tlcrt~n--v~~~C~~~~k~m~nllgthlg~~~~~ 261 (1697)
T KOG3687|consen 190 ICLLCVRTASSVDIEVLQVLDAVVCYN------CLPAESLPQFIVTLCRTIN--VKELCEPCWKLMRNLLGTHLGHSAIY 261 (1697)
T ss_pred HHHHHHhhccccchhhhhhhhhheeee------ecccchHHHHHHHHhcccc--hhhcCchHHHHHHhhhhcccchHHHH
Q ss_pred --------cHHHHH--------------------------hHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHhhhcc
Q 001487 263 --------PRFLRR--------------------------QLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERA 308 (1069)
Q Consensus 263 --------~~~~~~--------------------------~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~ 308 (1069)
...+.+ +...+++.+++.+ .+.+.-++...+-.+..++. .
T Consensus 262 ~mc~~~~drA~~eDa~llrgavf~~~m~~~g~~~~~~~~~~~T~v~~~fL~a~--DS~~~iV~yeVIlsi~~~i~----k 335 (1697)
T KOG3687|consen 262 NMCHLMEDRAYMEDAPLLRGAVFFVGMALWGAHRLYSLRNSPTSVFPSFLQAM--DSPNEVVSYEVILSITRLIK----K 335 (1697)
T ss_pred HHHhhhhhhhhhccchhhcchhhhcchhhcccceeeeecccchhhHHHHHHHh--cCccceEEEEEeehhhHHHH----H
Q ss_pred chhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCcchhhHHHHHHHHHHHcCCccchHHHHHHHHHhhcC
Q 001487 309 PGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAA 388 (1069)
Q Consensus 309 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~ 388 (1069)
-.......+.+-.++..++..+.+.++.. -...+..-..+++.++.. +++....-.+..-.-.-
T Consensus 336 ~~l~~~~wD~il~i~S~~vS~~~Y~~~~~-------------l~~iFh~~~~~ve~L~~q---n~~~g~~er~~~lier~ 399 (1697)
T KOG3687|consen 336 YELQVVAWDILLNIISRLLSQLQYLDSPE-------------LRTIFHDLLTTVEELCDQ---NEFHGSQERYFELVERC 399 (1697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcchh-------------hhhHHHhhhhHHHHHHhh---hhhcchHHHHHHHHHHh
Q ss_pred CChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCC-CCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHh
Q 001487 389 PEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFR-DPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAG 467 (1069)
Q Consensus 389 ~~~~~r~aal~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~ 467 (1069)
.+-+---..+..+..=+......-...+..+-..+.+..+ +.+..||-.....+..+..........+.+..++=..+.
T Consensus 400 ad~rpe~sVlnli~Yr~~~V~A~R~gwiq~l~~lm~r~~r~~s~~~Vrik~~~~l~~~~l~nr~~yeeEIL~~VvL~~ls 479 (1697)
T KOG3687|consen 400 ADQRPESSVLNLISYRAQSVHAARDGWIQNLQALMERFFRSESRGAVRIKVLDVLSFVLLINRQFYEEEILNSVVLSQLS 479 (1697)
T ss_pred hhcCchHHHHHHHHHhhhccCcCCchHHHHHHHHHHHHHHhcccceEEEeeHHHHHHHHhhhhhhhHHHhhhheeeEeec
Q ss_pred hccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhHhhhHhhHhhh
Q 001487 468 AMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAV 545 (1069)
Q Consensus 468 ~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~i~~~l~~~l~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~i 545 (1069)
..--.++..||..+..+|.++++.|... ..--+-.+++++...-.++.+.+.+....+.+.-..........++...
T Consensus 480 hi~L~~~~qvr~l~~~~l~N~a~~C~t~-~~~~lldi~EA~~~rs~s~~~~l~e~~~~~~~a~~~dI~~aVlgll~~~ 556 (1697)
T KOG3687|consen 480 HIPLDKDHQVRKLATQLLVNLAEGCHTH-HFNSLLDIIEAVMARSLSPPPELEERDVAAYSASLEDIKTAVLGLLVIL 556 (1697)
T ss_pred cccccchhHHHHHHHHHHHHHHhhcchh-cchhHHHHHHHHHhcccCCCcchhhhhhhhhhhHHHHHHHHHHHHHHHH
No 389
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.89 E-value=6.1e+02 Score=26.70 Aligned_cols=107 Identities=20% Similarity=0.156 Sum_probs=69.0
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhCCcchHhH
Q 001487 145 LPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDR 224 (1069)
Q Consensus 145 l~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 224 (1069)
+..+...+.+.+|.+|..|+..+..+...-...+..+....++.+.+.+.+. .+ -.-|+.++.++...- ..
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~-~~--~~~a~~alVnlsq~~------~l 75 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDL-DP--AEPAATALVNLSQKE------EL 75 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCc-cc--ccHHHHHHHHHHhhH------HH
Confidence 4456677788889999999987766655422334455666778888888776 44 334556666666532 22
Q ss_pred HHhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHc
Q 001487 225 FQDLLPLMMRTLTESLNNGNEATAQEALELLIELAG 260 (1069)
Q Consensus 225 ~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~ 260 (1069)
-..++..+++.++..+.++........+.++..+.+
T Consensus 76 ~~~ll~~~~k~l~~~~~~p~~~lad~~cmlL~NLs~ 111 (353)
T KOG2973|consen 76 RKKLLQDLLKVLMDMLTDPQSPLADLICMLLSNLSR 111 (353)
T ss_pred HHHHHHHHHHHHHHHhcCcccchHHHHHHHHHHhcc
Confidence 234455577777777766666666667777776655
No 390
>cd00869 PI3Ka_II Phosphoinositide 3-kinase (PI3K) class II, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, class II PI3-kinases phosphorylate phosphoinositol (PtdIns), PtdIns(4)-phosphate, but not PtdIns(4,5)-bisphosphate. They are larger, having a C2 domain at the C-terminus.
Probab=32.60 E-value=4.4e+02 Score=25.04 Aligned_cols=80 Identities=20% Similarity=0.176 Sum_probs=42.2
Q ss_pred ChHHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc-CCCHHHHHHHHHHHHhhcccCCCCcccCCCH
Q 001487 20 DSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDDSFLWPRLSL 98 (1069)
Q Consensus 20 ~~~~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~~p~~~~~~L~~il~~-~~~~~~R~~a~i~L~~~i~~~~~~~w~~l~~ 98 (1069)
++..|..+|.+.-+-+.+...++...|+.+..-+|.. -+++|.. =.++.||+.|...|++ +++
T Consensus 37 ~p~aLp~~L~s~~~w~~~~~~e~~~LL~~W~p~~p~~----ALeLL~~~f~d~~VR~yAV~~L~~------------~~d 100 (169)
T cd00869 37 EPNALPLVLASAPSWDWANLMDVYQLLHQWAPLRPLI----ALELLLPKFPDQEVRAHAVQWLAR------------LSN 100 (169)
T ss_pred CcHHHHHHHHhcccCcHHHHHHHHHHHhCCCCCCHHH----HHHHcCCcCCChHHHHHHHHHHHh------------CCH
Confidence 3445555555443223344555555555554423322 3344443 3346777777777755 334
Q ss_pred HHHHHHHHHHHHHHhhc
Q 001487 99 HTQSSLKSMLLQSIQLE 115 (1069)
Q Consensus 99 ~~~~~i~~~ll~~l~~e 115 (1069)
+........|.|+|.-|
T Consensus 101 deL~~yLpQLVQaLkyE 117 (169)
T cd00869 101 DELLDYLPQLVQALKFE 117 (169)
T ss_pred HHHHHHHHHHHHHHHcc
Confidence 45555556667777655
No 391
>PF13925 Katanin_con80: con80 domain of Katanin
Probab=31.94 E-value=1.3e+02 Score=28.40 Aligned_cols=55 Identities=22% Similarity=0.418 Sum_probs=42.8
Q ss_pred HHHHHHHHHhcccCCCCc-----hhhHHHHHHhhcCCChhHHHHHHHHHHHhhhhhhhhcc
Q 001487 124 LCDTVSELASNILPENGW-----PELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLT 179 (1069)
Q Consensus 124 ~~~~i~~i~~~~~~~~~w-----~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~ 179 (1069)
+++++..+....-+ +.| ..++|.+..+++|........|+..+..+...+++.+.
T Consensus 46 lvD~L~vl~~~~~~-~~~tLd~c~~lLP~i~~LL~Sk~E~~i~~aL~~L~~i~~~f~~~I~ 105 (164)
T PF13925_consen 46 LVDVLSVLNQSLKP-EKWTLDLCVDLLPLIEELLQSKYESYISVALEMLRSILKKFGPVIR 105 (164)
T ss_pred HHHHHHHHHHhcCc-CcccHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677766632223 446 68999999999999999999999999999998877644
No 392
>PF01465 GRIP: GRIP domain; InterPro: IPR000237 The GRIP (golgin-97, RanBP2alpha,Imh1p and p230/golgin-245) domain [, , ] is found in many large coiled-coil proteins. It has been shown to be sufficient for targeting to the Golgi []. The GRIP domain contains a completely conserved tyrosine residue.; GO: 0005515 protein binding, 0000042 protein targeting to Golgi; PDB: 1R4A_H 1UPT_B.
Probab=31.25 E-value=1.1e+02 Score=21.55 Aligned_cols=33 Identities=24% Similarity=0.276 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHh
Q 001487 100 TQSSLKSMLLQSIQLESAKSISKKLCDTVSELAS 133 (1069)
Q Consensus 100 ~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~i~~ 133 (1069)
..+++|+.+++.|.. .++..|..+..+|+.+.+
T Consensus 4 ~~eYLKNvl~~fl~~-~~~~~~~~llpvi~tlL~ 36 (46)
T PF01465_consen 4 NLEYLKNVLLQFLES-REPSEREQLLPVIATLLK 36 (46)
T ss_dssp HHHHHHHHHHHHHTT-SS---HHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHC
Confidence 567899999999997 457788888888888876
No 393
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=30.59 E-value=9.1e+02 Score=28.04 Aligned_cols=116 Identities=9% Similarity=0.161 Sum_probs=77.7
Q ss_pred HHHhHHHHH-HHHHhhCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhh
Q 001487 412 MVKNLEQVL-SMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSE 490 (1069)
Q Consensus 412 ~~~~~~~i~-~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~ 490 (1069)
+...+..++ ..++.+..|-++.+|..|...++..+...+.-+. . -..+...--.|.| .+..||......+..++.
T Consensus 268 ~~d~i~dicdsvfvsRy~Dv~d~IRv~c~~~L~dwi~lvP~yf~-k--~~~lry~GW~LSD-n~~~vRl~v~Kil~~L~s 343 (740)
T COG5537 268 IRDEIKDICDSVFVSRYIDVDDVIRVLCSMSLRDWIGLVPDYFR-K--ILGLRYNGWSLSD-NHEGVRLLVSKILLFLCS 343 (740)
T ss_pred HHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhcchHHHH-h--hhccccccccccc-chHHHHHHHHHHHHHHHh
Confidence 445566665 4567788999999999999998887766543321 1 1133334445777 788999999999998887
Q ss_pred cCCc-ccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHH
Q 001487 491 NCTP-EILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVA 531 (1069)
Q Consensus 491 ~~~~-~~~~~~l~~i~~~l~~~l~~~~~~v~~~al~~l~~l~ 531 (1069)
.-+. +.+..+++.....++..+......||-.++..+..+-
T Consensus 344 ~~p~~d~ir~f~eRFk~rILE~~r~D~d~VRi~sik~l~~lr 385 (740)
T COG5537 344 RIPHTDAIRRFVERFKDRILEFLRTDSDCVRICSIKSLCYLR 385 (740)
T ss_pred cCCcchHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHH
Confidence 6442 2345566666677777665554448877777666543
No 394
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=30.41 E-value=1.1e+02 Score=26.00 Aligned_cols=58 Identities=19% Similarity=0.289 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHhHhhhhhhhhh-HhHHHHHHhhcc--CCChhHHHhhhHHHHHHHhhcCC
Q 001487 899 RRIAICIFDDVAEQCREAALKYY-ETYLPFLLEACN--DENQDVRQAAVYGLGVCAEFGGS 956 (1069)
Q Consensus 899 r~~a~~~l~~l~~~~~~~~~~~~-~~l~~~ll~~l~--~~~~~vr~~a~~~lg~l~~~~~~ 956 (1069)
|...+.+|+-++-.....-.... -.=+|.+++++. +.+|.+|.-|.+|+-.++..+++
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~e 63 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPE 63 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHH
Confidence 34455566666544433211100 122678887764 56899999999999999998875
No 395
>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]
Probab=30.14 E-value=3.2e+02 Score=31.99 Aligned_cols=254 Identities=14% Similarity=0.053 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCCCChHhh
Q 001487 764 LSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEES 843 (1069)
Q Consensus 764 ~~~~i~~~l~~~~~~~~~~~v~~~~l~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~e~~d~~~~ 843 (1069)
+.+.++.-+.....+ .+..++-++.+++++.+..++-......++ +.+...+-+.-+.-+-+-
T Consensus 243 ~l~~iV~f~~~s~Ss-~~~~~rf~~a~~~aki~srl~w~l~~sfi~-ii~~~~en~~~s~l~~~c--------------- 305 (993)
T COG5234 243 YLEVIVDFLLSSVSS-IDSFVRFSAAKGLAKIISRLPWNLAESFID-IIELMTENMFLSPLENTC--------------- 305 (993)
T ss_pred HHHHHHHHHHcCccc-ccHHHHHHHHhhHHHHHhhcccccHHHHHH-HHHhcccccchhhhhCcc---------------
Q ss_pred hHhhhhhhhHHHHHHHHHHHHHHHHHHhhhchhhhHHHHHhhhhhhhc-------CCCCHHHHHHHHHHHHHHHhHhhhh
Q 001487 844 ELIKEENEQEEEVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWG-------KDKTAEERRIAICIFDDVAEQCREA 916 (1069)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~-------~~~~~~~r~~a~~~l~~l~~~~~~~ 916 (1069)
|.....+-+...+.-.++ +++..+=++..-+ +.|.+.+-+. .......|..+.-.+..+.......
T Consensus 306 ----dii~tnel~w~~~i~~~a-la~~~~id~~d~~--i~~iI~kg~~y~~~~~~~v~g~~IRdss~f~vWs~~r~~S~s 378 (993)
T COG5234 306 ----DIIITNELVWHGAILFFA-LAGAGLIDYSDCL--ILPIIEKGLSYEVRYGTRVTGQSIRDSSCFFVWSFYRCYSKS 378 (993)
T ss_pred ----ceeecchHHHHHHHHHHH-Hhhccccchhhhh--hhhheccccceeehheeeeccceeecccceeeeeeeeccccc
Q ss_pred hhh-hhHhHHHHHHh-hccCCChhHHHhhhHHHHHHHhhcCCCchHHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHH
Q 001487 917 ALK-YYETYLPFLLE-ACNDENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSAL 994 (1069)
Q Consensus 917 ~~~-~~~~l~~~ll~-~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~l 994 (1069)
..+ .-..++-.++. .+=|++-.+|++|+.++-+++-. +.-.+.-.+++..+ +.-..+ . ..|+-+.+
T Consensus 379 ~~~~lqt~L~hll~~~alFDpel~vRr~a~Aal~E~iGR--~~s~a~g~~lIslI-N~~sv~--------r-~s~csg~~ 446 (993)
T COG5234 379 AIEGLQTNLIHLLLQTALFDPELNVRRAATAALFEVIGR--HASIADGLSLISLI-NYVSVT--------R-ISNCSGDL 446 (993)
T ss_pred cchhHHHHHHHHHHhhhhcCchhhhhhHHHHHHHHHhcc--CCCcccchhhhhhc-cceecc--------h-hhhcchHH
Q ss_pred HHHHhhcCCCCCHhhHHHHHHhhCCCCCcHHHHHHHHHHHHHHHhhcCCcccCcCcCChhHHHH
Q 001487 995 GKICQFHRDSIDAAQVVPAWLNCLPIKGDLIEAKIVHEQLCSMVERSDSDLLGPNHQYLPKIVS 1058 (1069)
Q Consensus 995 ~~i~~~~~~~~~~~~~~~~~l~~lp~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~i~~ 1058 (1069)
+|.....|.......++..||-.==..-|.+.....--++..++ +++..+=.+ +|.|+.
T Consensus 447 ~r~~~~~~k~~~CedVF~diLl~Nl~H~~~~~k~~~~y~l~~li-K~~~~~p~y----l~~Il~ 505 (993)
T COG5234 447 CRKVAHFPKFRSCEDVFQDILLTNLQHWDVKVKQLSAYSLRQLI-KYPKELPIY----LPPILD 505 (993)
T ss_pred HHHhcCccccchHHHHHHHHHHhhhhccchhhhhhccccHHHHh-cCcccCchh----hhHHhh
No 396
>PF05997 Nop52: Nucleolar protein,Nop52; InterPro: IPR010301 Nop52 is believed to be involved in the generation of 28S rRNA [].; GO: 0006364 rRNA processing, 0030688 preribosome, small subunit precursor
Probab=29.45 E-value=1.9e+02 Score=28.97 Aligned_cols=73 Identities=14% Similarity=0.077 Sum_probs=52.8
Q ss_pred HHhhCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcc
Q 001487 423 VLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPE 495 (1069)
Q Consensus 423 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~ 495 (1069)
+.+.|.+.++.+|..|+..+..+...-.......-+..+...|+-++=....|.+|+..+.-|+.++..+...
T Consensus 5 ~~k~LAs~d~~~R~~al~~l~~~l~~~~~~~~~~~~~kLWKGLfy~mWmsDkpl~Q~~la~~la~l~~~~~~~ 77 (217)
T PF05997_consen 5 FAKKLASNDKKTRDRALKSLRKWLSKRSQLLTELDMLKLWKGLFYCMWMSDKPLVQEELAEELASLIHSFPSE 77 (217)
T ss_pred HHHHhhcCChhHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhcCh
Confidence 4456788899999999999988776543321134466788888776544347889999998888888777643
No 397
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.36 E-value=8.4e+02 Score=27.27 Aligned_cols=55 Identities=11% Similarity=0.085 Sum_probs=35.0
Q ss_pred hhhHHHHHHhhcCCChhHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHhhcCC
Q 001487 142 PELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNS 196 (1069)
Q Consensus 142 ~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~ 196 (1069)
..++..+..++...++..|...+..+-.+.-..+-.-+.....++|.+...+.++
T Consensus 344 ~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d 398 (791)
T KOG1222|consen 344 NGIVEKLLKLFPIQHPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSD 398 (791)
T ss_pred ccHHHHHHHhcCCCCHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCc
Confidence 3566777777777788888888877776653322111113345778888877775
No 398
>cd00869 PI3Ka_II Phosphoinositide 3-kinase (PI3K) class II, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, class II PI3-kinases phosphorylate phosphoinositol (PtdIns), PtdIns(4)-phosphate, but not PtdIns(4,5)-bisphosphate. They are larger, having a C2 domain at the C-terminus.
Probab=29.09 E-value=5.1e+02 Score=24.65 Aligned_cols=97 Identities=12% Similarity=0.164 Sum_probs=52.8
Q ss_pred hHHHHHHHHHHHHhhhcCchHHHHHHHHHHccCCCHHHHHHHHHHHHhhcccCCCCcccCCCHHHHHHHHHHHHHHHhhc
Q 001487 36 NEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLE 115 (1069)
Q Consensus 36 ~~~r~~A~~~L~~~~~~~p~~~~~~L~~il~~~~~~~~R~~a~i~L~~~i~~~~~~~w~~l~~~~~~~i~~~ll~~l~~e 115 (1069)
.+.|.---+.=..+.+ +|.+ ++.++.-...-.+..++.. -.+| .. |..++++.. ++.|...
T Consensus 21 ~~ek~llW~~R~~~~~-~p~a-Lp~~L~s~~~w~~~~~~e~-~~LL----~~-----W~p~~p~~A-------LeLL~~~ 81 (169)
T cd00869 21 TEDKDLLWEKRLYCTN-EPNA-LPLVLASAPSWDWANLMDV-YQLL----HQ-----WAPLRPLIA-------LELLLPK 81 (169)
T ss_pred HHHHHHHHHHHHHHhh-CcHH-HHHHHHhcccCcHHHHHHH-HHHH----hC-----CCCCCHHHH-------HHHcCCc
Confidence 3444433333223444 6766 4555553322123344442 2233 22 999888754 3444432
Q ss_pred -chhhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCCC
Q 001487 116 -SAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDS 156 (1069)
Q Consensus 116 -~~~~vr~~~~~~i~~i~~~~~~~~~w~~ll~~l~~~~~~~~ 156 (1069)
++..||..+.+++..+ +.+..-.++|.|+|.++-..
T Consensus 82 f~d~~VR~yAV~~L~~~-----~ddeL~~yLpQLVQaLkyE~ 118 (169)
T cd00869 82 FPDQEVRAHAVQWLARL-----SNDELLDYLPQLVQALKFEL 118 (169)
T ss_pred CCChHHHHHHHHHHHhC-----CHHHHHHHHHHHHHHHHccc
Confidence 4667999888888754 22455677888888887543
No 399
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=28.97 E-value=2.1e+02 Score=31.49 Aligned_cols=150 Identities=14% Similarity=0.134 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHHHHH---HhhhchhhhHH-H-HHhhhhhhhcC--CCCHHHHHHHHHHHHHHHhHhhhhhhhh-hHhH
Q 001487 853 EEEVFDQVGEILGTLIK---TFKAAFLPFFD-E-LSSYLTPMWGK--DKTAEERRIAICIFDDVAEQCREAALKY-YETY 924 (1069)
Q Consensus 853 ~~~~~~~~~~~l~~l~~---~~~~~~~~~~~-~-l~~~l~~~l~~--~~~~~~r~~a~~~l~~l~~~~~~~~~~~-~~~l 924 (1069)
...++....+++..+.. ..+......++ . +...+...++. .-.+.....|+.++..++.+-+..+... =..+
T Consensus 73 r~~llK~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl 152 (379)
T PF06025_consen 73 RQQLLKSLLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGL 152 (379)
T ss_pred HHHHHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCC
Confidence 34566667777777776 22233444555 3 44444444422 2235567778888888887755543221 1355
Q ss_pred HHHHHhhcc-C---CChhHHHhhhHHHHHHHhhcC--CCchHHHHHHHHHHHHhhcCCCCCC-hhhhhhHHHHHHHHHHH
Q 001487 925 LPFLLEACN-D---ENQDVRQAAVYGLGVCAEFGG--SVVKPLVGEALSRLNVVIRHPNALQ-PENLMAYDNAVSALGKI 997 (1069)
Q Consensus 925 ~~~ll~~l~-~---~~~~vr~~a~~~lg~l~~~~~--~~~~~~~~~~l~~L~~~l~~~~~~~-~~~~~~~~~~~~~l~~i 997 (1069)
.+.+++.+. . ++.++-..--.++|.+|.+.. +.+... ..++.+.+++..++... ....++..+.-.++..+
T Consensus 153 ~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~~Gl~~~~~~--~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL 230 (379)
T PF06025_consen 153 IDAFLDAITAKGILPSSEVLTSLPNVLSAICLNNRGLEKVKSS--NPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDEL 230 (379)
T ss_pred hHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcCHHHHHHHHhc--ChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHH
Confidence 566666665 2 556777777777888877653 233332 45666777776663211 01113444445666667
Q ss_pred HhhcCCC
Q 001487 998 CQFHRDS 1004 (1069)
Q Consensus 998 ~~~~~~~ 1004 (1069)
++++|..
T Consensus 231 ~RH~p~L 237 (379)
T PF06025_consen 231 MRHHPSL 237 (379)
T ss_pred HccCHHH
Confidence 7777753
No 400
>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=28.90 E-value=4.9e+02 Score=24.43 Aligned_cols=117 Identities=17% Similarity=0.164 Sum_probs=55.2
Q ss_pred HHHHHHHhhcccCCCCcccCCCHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccC---CCCchhhHHHHHHhh
Q 001487 76 MAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILP---ENGWPELLPFMFQCV 152 (1069)
Q Consensus 76 ~a~i~L~~~i~~~~~~~w~~l~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~---~~~w~~ll~~l~~~~ 152 (1069)
++..+|.+.++.+ +..+.+|.+.+++.+....+..+ ....++++.+++.. | .+.|..+. .++..+
T Consensus 37 LG~~IL~~~fk~h---------~~~r~~Ile~l~~rI~~~s~~~~-~~~idlL~~lv~~~-p~~vle~~~~l~-~~ld~l 104 (158)
T PF14676_consen 37 LGIQILLELFKVH---------EMIRSEILEQLLNRIVTKSSSPS-SQYIDLLSELVRKA-PLTVLECSSKLK-ELLDYL 104 (158)
T ss_dssp HHHHHHHHHHHH----------GGGHHHHHHHHHHHHHH--SS---HHHHHHHHHHHHH--HHHHS-S-HHHH-GGGGGT
T ss_pred HHHHHHHHHHHHh---------HHHHHHHHHHHHHHHHhcCccch-hHHHHHHHHHHHHC-hHHHHHHHHHHH-HHHHHH
Confidence 8888999988876 44566677777777765433222 33467788777742 2 01222211 111111
Q ss_pred cCCChhHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHhhcCCCChHHHHHHHHHH
Q 001487 153 SSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAV 209 (1069)
Q Consensus 153 ~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l 209 (1069)
..=.......-+.++.-+++... ..-+.++-.+-+.+-+. +...|..|+..+
T Consensus 105 ~~lp~~~a~~ll~Al~PLi~~s~----~lrd~lilvLRKamf~r-~~~~R~~Av~Gf 156 (158)
T PF14676_consen 105 SFLPGDVAIGLLRALLPLIKFSP----SLRDSLILVLRKAMFSR-ELDARQMAVNGF 156 (158)
T ss_dssp TTS-HHHHHHHHHHHHHHHTT-H----HHHHHHHHHHHHHTT-S-SHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHhcCH----HHHHHHHHHHHHHHccc-cHHHHHHHHHHh
Confidence 11112222222233333332211 13455556666666665 667777776544
No 401
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=28.44 E-value=4.5e+02 Score=23.80 Aligned_cols=101 Identities=14% Similarity=0.119 Sum_probs=56.3
Q ss_pred HhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHH--HHHHHHHhhCCCCChhHHHHHHHHHHHhHhhhchhHHhhhh--h
Q 001487 384 AYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLE--QVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFH--P 459 (1069)
Q Consensus 384 ~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~--~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~--~ 459 (1069)
++-+..+...++-...-|+.++..... ..++. +++..++..+..++.....-+.-.|+.+| .+.....++ .
T Consensus 24 efq~tt~~eakeqv~ANLANFAYDP~N--ys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC---~d~~n~~~I~ea 98 (173)
T KOG4646|consen 24 EFQTTTNIEAKEQVTANLANFAYDPIN--YSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLC---LDKTNAKFIREA 98 (173)
T ss_pred HHHHhccHHHHHHHHHHHHhhccCcch--HHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhc---cChHHHHHHHHh
Confidence 333445555555555555555543322 13333 46788888999999888766655555544 332212222 2
Q ss_pred hhHHHHHhhccCCCChhHHHHHHHHHHHhhh
Q 001487 460 QVLPALAGAMDDFQNPRVQAHAASAVLNFSE 490 (1069)
Q Consensus 460 ~il~~l~~~l~~~~~~~v~~~a~~al~~l~~ 490 (1069)
.=+|.++..+.+ +...+-..+..++.-++.
T Consensus 99 ~g~plii~~lss-p~e~tv~sa~~~l~~l~~ 128 (173)
T KOG4646|consen 99 LGLPLIIFVLSS-PPEITVHSAALFLQLLEF 128 (173)
T ss_pred cCCceEEeecCC-ChHHHHHHHHHHHHHhcC
Confidence 234556677777 655565666666665543
No 402
>cd00870 PI3Ka_III Phosphoinositide 3-kinase (PI3K) class III, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3Ks class III phosphorylate phosphoinositol (PtdIns) only. The prototypical PI3K class III, yeast Vps34, is involved in trafficking proteins from Golgi to the vacuole.
Probab=27.92 E-value=5.3e+02 Score=24.47 Aligned_cols=51 Identities=10% Similarity=0.204 Sum_probs=34.9
Q ss_pred ccCCCHHHHHHHHHHHHHHHhhc-chhhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCC
Q 001487 93 WPRLSLHTQSSLKSMLLQSIQLE-SAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSD 155 (1069)
Q Consensus 93 w~~l~~~~~~~i~~~ll~~l~~e-~~~~vr~~~~~~i~~i~~~~~~~~~w~~ll~~l~~~~~~~ 155 (1069)
|..++++.. ++.|... ++..||..+.+++..+ +.+..-.++|.|++.++-.
T Consensus 73 W~~i~~~~a-------LeLL~~~f~~~~VR~yAV~~L~~~-----sd~eL~~yL~QLVQaLKyE 124 (166)
T cd00870 73 WAKIDIEDA-------LELLSPYFTNPVVRKYAVSRLKLA-----SDEELLLYLLQLVQALKYE 124 (166)
T ss_pred CCCCCHHHH-------HHHcCccCCCHHHHHHHHHHHHhC-----CHHHHHHHHHHHHHHHHhc
Confidence 988887654 3444432 4678999888888753 3356777888888887654
No 403
>PF10193 Telomere_reg-2: Telomere length regulation protein; InterPro: IPR019337 This entry represents a conserved domain found in a group of proteins called telomere-length regulation, or clock abnormal protein-2, which are conserved from plants to humans. These proteins regulate telomere length and contribute to silencing of sub-telomeric regions []. In vitro the protein binds to telomeric DNA repeats. ; PDB: 3O4Z_B.
Probab=27.39 E-value=2.4e+02 Score=24.76 Aligned_cols=69 Identities=20% Similarity=-0.004 Sum_probs=42.0
Q ss_pred HHHHhhcc-C-CChhHHHhhhHHHHHHHhhcCC---CchHHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHHH
Q 001487 926 PFLLEACN-D-ENQDVRQAAVYGLGVCAEFGGS---VVKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGK 996 (1069)
Q Consensus 926 ~~ll~~l~-~-~~~~vr~~a~~~lg~l~~~~~~---~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~l~~ 996 (1069)
..++..+. + ++++....|....-.++...+. .+..+..+++..|..+=... ..++....|.+++.+++-
T Consensus 6 rDll~~L~~~~~~~e~~e~aL~~a~~LIR~k~~fg~el~~~a~eL~~~Ll~L~~~f--~~~~Fe~~R~~alval~v 79 (114)
T PF10193_consen 6 RDLLEYLRSDDEDYEKFEAALKSAEKLIRRKPDFGTELSEYAEELLKALLHLQNKF--DIENFEELRQNALVALVV 79 (114)
T ss_dssp HHHHHHHT------S-SHHHHHHHHHHHHS-----SSHHHHHHHHHHHHHH---TT----TTTTHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcCCHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhccccC--CccCHHHHHHHHHHHHHH
Confidence 33444444 2 2577788889999999998887 88889999988887753222 223467888888887653
No 404
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=27.05 E-value=1.3e+03 Score=28.80 Aligned_cols=126 Identities=12% Similarity=0.101 Sum_probs=67.4
Q ss_pred hhHHHhhhHHHHHHHhhcCCCchHHHHHHHHHHHHhhcCCC-CC-ChhhhhhHHHHH-HHHHHHHhh----cCCCCCHhh
Q 001487 937 QDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPN-AL-QPENLMAYDNAV-SALGKICQF----HRDSIDAAQ 1009 (1069)
Q Consensus 937 ~~vr~~a~~~lg~l~~~~~~~~~~~~~~~l~~L~~~l~~~~-~~-~~~~~~~~~~~~-~~l~~i~~~----~~~~~~~~~ 1009 (1069)
..+-..-+..|-.|++..|.....++...|..+...+.... .. ....+.+.+-+. ..+|.|..+ ||=..|.--
T Consensus 489 ~~~ld~L~~~L~~Laq~~p~~~a~~~r~~L~~~~~~~~~~~l~~~~~~~P~l~~Lvllklv~~lFPTSD~~HpVVTPall 568 (840)
T PF04147_consen 489 FEVLDSLIPHLYDLAQKYPEEAAECFREVLKEMQKRFRKGALKPKERSWPSLSDLVLLKLVGTLFPTSDFRHPVVTPALL 568 (840)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCChhHHHHHHHHHHhcCcccccCcchhHHHH
Confidence 34444444555566666655555555555555544443310 00 001233333332 222333222 111115667
Q ss_pred HHHHHHhhCCCCCcHHHHHHHHHHHHHHHhhcCCcccCcCcCChhHHHHHHHHHhhhhc
Q 001487 1010 VVPAWLNCLPIKGDLIEAKIVHEQLCSMVERSDSDLLGPNHQYLPKIVSVFAEVSSCFI 1068 (1069)
Q Consensus 1010 ~~~~~l~~lp~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 1068 (1069)
++..+|...|+.+-. ......+||.|+-+|-.. -..|+|.+++.+..+|.+++
T Consensus 569 lm~~~L~q~~v~s~~--di~~GlfL~~l~l~y~~~----SKR~vPEvinFL~~~L~~~~ 621 (840)
T PF04147_consen 569 LMSEYLSQCRVRSLR--DIASGLFLCTLLLEYQSL----SKRFVPEVINFLLGLLLLLV 621 (840)
T ss_pred HHHHHHhcCCCCCHH--HHHHHHHHHHHHHHHHHH----hcccChHHHHHHHHHHHHhC
Confidence 888999999986322 233445556777666433 34569999999999998774
No 405
>PF14961 BROMI: Broad-minded protein
Probab=26.63 E-value=2e+02 Score=36.18 Aligned_cols=84 Identities=8% Similarity=0.129 Sum_probs=60.8
Q ss_pred HHHHHHHhhcchhhHHHHHHHHHHHHHhcccC-CCCchhhHHHHHHhhcCCChhHHHHHHHHHHHhhhhhhhhcc-hhHH
Q 001487 106 SMLLQSIQLESAKSISKKLCDTVSELASNILP-ENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLT-PHLK 183 (1069)
Q Consensus 106 ~~ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~-~~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~-~~~~ 183 (1069)
+.+++.+....+.++|..+.+.+..+--.+.. ...|+.+-..|...+.++++...+.++..........+-.+. +.+.
T Consensus 164 q~i~d~ld~~~P~evR~eAlq~Lc~~p~SDVls~E~W~~L~~~L~~~LsDpD~~is~~~L~f~Ak~fssSpl~~trEiYt 243 (1296)
T PF14961_consen 164 QLIADKLDPGQPKEVRLEALQILCSAPPSDVLSCESWSVLRENLTDALSDPDPEISDASLRFHAKMFSSSPLNMTREIYT 243 (1296)
T ss_pred HHHHHhcCCCCchHHHHHHHHHHhcCChhhccccccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccCCchhhhHHHHH
Confidence 56677777666788999888777655433332 358999999999999999999999999998888776655432 2333
Q ss_pred HHHHHH
Q 001487 184 HLHAVF 189 (1069)
Q Consensus 184 ~l~~~l 189 (1069)
.+...+
T Consensus 244 sL~~~l 249 (1296)
T PF14961_consen 244 SLANHL 249 (1296)
T ss_pred HHHHHH
Confidence 344433
No 406
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=26.22 E-value=4.1e+02 Score=25.59 Aligned_cols=60 Identities=12% Similarity=0.107 Sum_probs=41.6
Q ss_pred CCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhh
Q 001487 429 DPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFS 489 (1069)
Q Consensus 429 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~ 489 (1069)
..+..+...++.|+..+...-...-..-..+..+..+...+.. ++..+|..++..|..+|
T Consensus 127 ~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s-~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 127 EEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDS-PNIKTRKLALEILAALC 186 (187)
T ss_dssp TTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--T-TSHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCC-CCHHHHHHHHHHHHHHH
Confidence 4566777888889888776432211012356788899999998 89999999998887765
No 407
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=26.03 E-value=4.7e+02 Score=24.00 Aligned_cols=30 Identities=23% Similarity=0.482 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhhcCCCChHHHHHHHHHHHHH
Q 001487 182 LKHLHAVFLNCLTNSNNPDVKIAALNAVINF 212 (1069)
Q Consensus 182 ~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l 212 (1069)
.+.+...+...|.++ +.+|++.|++|+..+
T Consensus 15 ~~~l~~~~~~LL~~~-d~~vQklAL~cll~~ 44 (141)
T PF07539_consen 15 SDELYDALLRLLSSR-DPEVQKLALDCLLTW 44 (141)
T ss_pred HHHHHHHHHHHHcCC-CHHHHHHHHHHHHHh
Confidence 456677788888997 999999999999875
No 408
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=25.96 E-value=1.2e+03 Score=28.00 Aligned_cols=78 Identities=15% Similarity=0.166 Sum_probs=49.6
Q ss_pred HHhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHccccHHHHHhHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHh
Q 001487 225 FQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEA 304 (1069)
Q Consensus 225 ~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~ 304 (1069)
+..++..++++|.....++-+.++..++..+-.++...|+.=. .++..+++-+++ .+..+...|--.|..+..
T Consensus 298 LK~ly~rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE~----~LL~~lVNKlGD--pqnKiaskAsylL~~L~~- 370 (988)
T KOG2038|consen 298 LKILYFRFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQEN----NLLVLLVNKLGD--PQNKIASKASYLLEGLLA- 370 (988)
T ss_pred HHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHHHH----HHHHHHHHhcCC--cchhhhhhHHHHHHHHHh-
Confidence 3445556777777776666778888888888888877665322 334444444433 455666677667766665
Q ss_pred hhccchh
Q 001487 305 RERAPGM 311 (1069)
Q Consensus 305 ~~~~~~~ 311 (1069)
.+|.+
T Consensus 371 --~HPnM 375 (988)
T KOG2038|consen 371 --KHPNM 375 (988)
T ss_pred --hCCcc
Confidence 46654
No 409
>KOG2229 consensus Protein required for actin cytoskeleton organization and cell cycle progression [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=25.74 E-value=1e+03 Score=27.02 Aligned_cols=84 Identities=12% Similarity=0.109 Sum_probs=51.4
Q ss_pred HHHhhhhhhhhcchhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhCCcchHhHHHhhHHHHHHHHHHHHhCCChH
Q 001487 167 FAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEA 246 (1069)
Q Consensus 167 l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~ 246 (1069)
+..++..++..+..+-.++..++......- .+.+|...++||.-+-..- .+ ....+++.++.++..++..
T Consensus 3 ~aqv~~~yp~~~a~FP~el~dLL~~~~~~l-p~~Lr~~i~~~LiLLrNk~-------~i--~~~~LL~lff~l~~~~dk~ 72 (616)
T KOG2229|consen 3 VAQVCPCYPEVLANFPSELKDLLRTNHTVL-PPELREKIVKALILLRNKN-------LI--VAEDLLELFFPLLRCGDKN 72 (616)
T ss_pred hhhcccccHHHHHhhhHHHHHHHHhccccC-CHHHHHHHHHHHHHHhccC-------cC--CHHHHHHHHHHHHhcCchh
Confidence 345555666655555555666666555554 7889999888887554321 00 0114555666666566777
Q ss_pred HHHHHHHHHHHHHc
Q 001487 247 TAQEALELLIELAG 260 (1069)
Q Consensus 247 ~~~~~~~~l~~l~~ 260 (1069)
.|..++.-+...+.
T Consensus 73 lRkllythiv~~Ik 86 (616)
T KOG2229|consen 73 LRKLLYTHIVTTIK 86 (616)
T ss_pred HHHHHHHHHHHHHH
Confidence 78887777776665
No 410
>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=24.57 E-value=5.8e+02 Score=23.98 Aligned_cols=83 Identities=17% Similarity=0.153 Sum_probs=43.1
Q ss_pred HHHHHHHhhhhhhhhcchhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhCCcchHhHHHhhHHHHHHHHHHHHhC
Q 001487 163 AFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNN 242 (1069)
Q Consensus 163 al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~ 242 (1069)
-.++|+.++...+-.+.++...+...+- .+..- ..++-..-++++.-++..- . .+-..++-++.+.+-+
T Consensus 75 ~idlL~~lv~~~p~~vle~~~~l~~~ld-~l~~l-p~~~a~~ll~Al~PLi~~s------~---~lrd~lilvLRKamf~ 143 (158)
T PF14676_consen 75 YIDLLSELVRKAPLTVLECSSKLKELLD-YLSFL-PGDVAIGLLRALLPLIKFS------P---SLRDSLILVLRKAMFS 143 (158)
T ss_dssp HHHHHHHHHHH-HHHHS-S-HHHHGGGG-GTTTS--HHHHHHHHHHHHHHHTT-------H---HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHChHHHHHHHHHHHHHHH-HHHhC-CHHHHHHHHHHHHHHHhcC------H---HHHHHHHHHHHHHHcc
Confidence 3577777777766555555555443332 22332 3455445555555555431 1 2223566667766666
Q ss_pred CChHHHHHHHHHHH
Q 001487 243 GNEATAQEALELLI 256 (1069)
Q Consensus 243 ~~~~~~~~~~~~l~ 256 (1069)
.+.+.|..|+.-+.
T Consensus 144 r~~~~R~~Av~Gfl 157 (158)
T PF14676_consen 144 RELDARQMAVNGFL 157 (158)
T ss_dssp SSHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHhc
Confidence 77788887776553
No 411
>PF03542 Tuberin: Tuberin; InterPro: IPR018515 Initiation of eukaryotic mRNA transcription requires melting of promoter DNA with the help of the general transcription factors TFIIE and TFIIH. In higher eukaryotes, the general transcription factor TFIIE consists of two subunits: the large alpha subunit (IPR002853 from INTERPRO) and the small beta (IPR003166 from INTERPRO). TFIIE beta has been found to bind to the region where the promoter starts to open to be single-stranded upon transcription initiation by RNA polymerase II. The approximately 120-residue central core domain of TFIIE beta plays a role in double-stranded DNA binding of TFIIE []. The TFIIE beta central core DNA-binding domain consists of three helices with a beta hairpin at the C terminus, resembling the winged helix proteins. It shows a novel double-stranded DNA-binding activity where the DNA-binding surface locates on the opposite side to the previously reported winged helix motif by forming a positively charged furrow []. This domain is found in Tuberin proteins. ; GO: 0005096 GTPase activator activity, 0043547 positive regulation of GTPase activity
Probab=23.99 E-value=9.7e+02 Score=26.16 Aligned_cols=77 Identities=10% Similarity=0.134 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHhHhhhhhhhhhHhHHHHHHhhccCCChhHHHhhhHHHHHHHhhcCCCchHHHHHHHHHHHHhhcCC
Q 001487 897 EERRIAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHP 976 (1069)
Q Consensus 897 ~~r~~a~~~l~~l~~~~~~~~~~~~~~l~~~ll~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~~l~~L~~~l~~~ 976 (1069)
+.....+.+|..++.+....-..--++++..+..++.+..+ +-++.+|-.++.-.|+.+...++.++..|.++...+
T Consensus 212 D~~~~~~~~Ls~LisYh~~~~k~~qd~iV~~l~~GL~s~~a---~~CI~aLtic~~EmP~s~~k~L~~iL~kLs~i~tt~ 288 (356)
T PF03542_consen 212 DLQVCVFPVLSALISYHSHFSKQEQDEIVRALESGLGSKTA---KPCIHALTICCYEMPDSMKKLLPSILLKLSKISTTP 288 (356)
T ss_pred HHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHhccCcH---HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccch
Confidence 44445566666666554332122345677777777765332 334556666677777778888888888887776544
No 412
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=23.56 E-value=1e+03 Score=26.18 Aligned_cols=55 Identities=9% Similarity=0.045 Sum_probs=33.4
Q ss_pred HhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhHhhhchhHHh-hhhhhhHHHHHhh
Q 001487 414 KNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQN-QFHPQVLPALAGA 468 (1069)
Q Consensus 414 ~~~~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~-~~~~~il~~l~~~ 468 (1069)
.|+.++...+-..++..++.......+++|.+.+++++-+.. .-...+++.++..
T Consensus 65 ~Y~g~~~k~i~p~l~~~~se~l~~~Y~~lg~lvk~c~~llytksk~~cll~~~vd~ 120 (373)
T PF14911_consen 65 EYFGDFEKWIKPYLKSKSSEGLQRIYRVLGILVKHCSPLLYTKSKSQCLLFRIVDC 120 (373)
T ss_pred HHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHhcchhheecCccccHHHHHHHH
Confidence 455556665555565567777778888888888887664422 2223444444443
No 413
>PF10350 DUF2428: Putative death-receptor fusion protein (DUF2428); InterPro: IPR019442 This domain is found in a family of proteins of unknown function that are conserved from plants to humans. Several of these proteins have been annotated as being HEAT repeat-containing proteins while others are designated as death-receptor interacting proteins, but neither of these has yet been confirmed. Aberrations in the genes encoding these proteins have been observed in benign thyroid adenomas [].
Probab=23.41 E-value=8.3e+02 Score=25.17 Aligned_cols=78 Identities=13% Similarity=0.032 Sum_probs=44.7
Q ss_pred HHHHHH-HHHHHHHhHhhhhhhhhhHhHHHHHHhhccCCCh--------hHHHhhhHHHHHHHhhcC--CCchHHHHHHH
Q 001487 898 ERRIAI-CIFDDVAEQCREAALKYYETYLPFLLEACNDENQ--------DVRQAAVYGLGVCAEFGG--SVVKPLVGEAL 966 (1069)
Q Consensus 898 ~r~~a~-~~l~~l~~~~~~~~~~~~~~l~~~ll~~l~~~~~--------~vr~~a~~~lg~l~~~~~--~~~~~~~~~~l 966 (1069)
-|+.++ .++..++..-+....+.++..+..+++..+.+.. .-+-+|..+|..++.... +.+.+|+.+.+
T Consensus 163 RRSAGLP~~i~aiL~ae~~~~~~ll~~~~~~Ll~ia~~~~~~~~~~~~d~~qVHAlNiLr~if~ds~L~~~~~~yi~~~l 242 (255)
T PF10350_consen 163 RRSAGLPFLILAILSAEPSNSRPLLHRTMKSLLEIAKSPSTQHEDEKSDLPQVHALNILRAIFRDSKLSEDVSPYIEDAL 242 (255)
T ss_pred cccCcHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCcccccccccchHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 344433 3444454443332225666777777776654332 466677777777777553 45777777776
Q ss_pred HHHHHhhcC
Q 001487 967 SRLNVVIRH 975 (1069)
Q Consensus 967 ~~L~~~l~~ 975 (1069)
..=.+.+..
T Consensus 243 ~lai~~f~s 251 (255)
T PF10350_consen 243 ILAIKGFSS 251 (255)
T ss_pred HHHHHhCCC
Confidence 655555443
No 414
>PF00613 PI3Ka: Phosphoinositide 3-kinase family, accessory domain (PIK domain); InterPro: IPR001263 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The role of the accessory domain of phosphoinositide 3-kinase (PI3-kinase) is unclear. It may be involved in substrate presentation [].; GO: 0004428 inositol or phosphatidylinositol kinase activity; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A ....
Probab=23.08 E-value=4.7e+02 Score=25.32 Aligned_cols=80 Identities=21% Similarity=0.313 Sum_probs=44.6
Q ss_pred CchHHHHHHHHHHccCCCHHHHHHHHHHHHhhcccCCCCcccCCCHHHHHHHHHHHHHHHhhc-chhhHHHHHHHHHHHH
Q 001487 53 DPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLE-SAKSISKKLCDTVSEL 131 (1069)
Q Consensus 53 ~p~~~~~~L~~il~~~~~~~~R~~a~i~L~~~i~~~~~~~w~~l~~~~~~~i~~~ll~~l~~e-~~~~vr~~~~~~i~~i 131 (1069)
+|.++ +.++..+ +-.++....-+..+|.. |..++++.. ++.|... +++.||..+...+..
T Consensus 43 ~p~aL-~~~L~sv-~w~~~~~~~~~~~ll~~---------W~~~~p~~A-------L~LL~~~f~~~~VR~yAv~~L~~- 103 (184)
T PF00613_consen 43 NPEAL-PKLLRSV-DWWNPEEVSEAYQLLLQ---------WPPISPEDA-------LELLSPNFPDPFVRQYAVRRLES- 103 (184)
T ss_dssp SGGGH-HHHHTTS-TTTSHHHHHHHHHHHHT---------SHCTTHHHH-------HHCTSTT---HHHHHHHHHHHCT-
T ss_pred CchHH-HHHHhhC-CCCchhhHHHHHHHHHc---------CCCCCHHHH-------HHHHHhhccHHHHHHHHHHHHHH-
Confidence 67763 5444422 22334433334444433 998888653 4555542 467788887777653
Q ss_pred HhcccCCCCchhhHHHHHHhhcCC
Q 001487 132 ASNILPENGWPELLPFMFQCVSSD 155 (1069)
Q Consensus 132 ~~~~~~~~~w~~ll~~l~~~~~~~ 155 (1069)
++.+....++|.|++.++-.
T Consensus 104 ----~~d~~l~~yLpQLVQaLr~e 123 (184)
T PF00613_consen 104 ----LSDEELLFYLPQLVQALRYE 123 (184)
T ss_dssp ----S-HHHHHHHHHHHHHHGGGS
T ss_pred ----cCchHHHHHHHHHHHHheec
Confidence 23245566788888887644
No 415
>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.
Probab=22.65 E-value=1.3e+03 Score=27.20 Aligned_cols=49 Identities=14% Similarity=0.175 Sum_probs=25.1
Q ss_pred HHHHHHHHhhhhhhhhcchhHHHHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHh
Q 001487 162 SAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTN-SNNPDVKIAALNAVINFIQC 215 (1069)
Q Consensus 162 ~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~-~~~~~vr~~a~~~l~~l~~~ 215 (1069)
.-+..|...+..+.. ....++..+++. .. ..++.++.+-+..+..++..
T Consensus 55 ~~L~~L~~~Vs~Ld~----~~~~LV~ail~~-~W~~~~~~~v~~y~~Fl~~Lvsa 104 (563)
T PF05327_consen 55 RWLKALSSCVSLLDS----SCKQLVEAILSL-NWLGRDEDFVEAYIQFLINLVSA 104 (563)
T ss_dssp HHHHHHHHGGGGG-S----CCHHHHHHHHT--TGGGS-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhh----HHHHHHHHHHcC-CCCCCCHHHHHHHHHHHHHHHHh
Confidence 344444444443333 355555555544 21 12667777777777777765
No 416
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=22.61 E-value=1.3e+03 Score=27.09 Aligned_cols=104 Identities=18% Similarity=0.188 Sum_probs=66.7
Q ss_pred ChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCccccc-CchHHHHHHHH
Q 001487 431 HPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILT-PYLDGIVSKLL 509 (1069)
Q Consensus 431 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~-~~l~~i~~~l~ 509 (1069)
.+.++......++-+.. +......+.+.+++-.+.+.+...+...++-+++..++.+.+..-+.... +..+.+...+-
T Consensus 451 ~~~l~~~~~~lL~l~~~-~~~~l~~~~i~qv~~~l~~l~~~~pp~~~kl~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~ 529 (559)
T PF14868_consen 451 QPYLQQTLSLLLSLLSF-FIQLLDPQLIEQVLTELTSLFKSEPPDHVKLALLDFLSSLGKLFIPESDQNPVSPALSELFH 529 (559)
T ss_pred chHHHHHHHHHHHHHHH-HHHhcChHHHHHHHHHHHHHHhhCCCccchHHHHHHHHHhccccCCccccchhhhHHHHHHH
Confidence 34445544444433322 22222234567777777777755345558888888888887755433222 45666666666
Q ss_pred HHhhcCChhHHHHHHHHHHHHHHhhH
Q 001487 510 VLLQNGKQMVQEGALTALASVADSSQ 535 (1069)
Q Consensus 510 ~~l~~~~~~v~~~al~~l~~l~~~~~ 535 (1069)
.++.+.++-+...|+++++.++....
T Consensus 530 ~LL~d~~Wll~q~ALeAF~~FAe~T~ 555 (559)
T PF14868_consen 530 MLLADRHWLLHQHALEAFGQFAERTS 555 (559)
T ss_pred HHhcCCcHHHHHHHHHHHHHHhccCC
Confidence 67889999999999999999987543
No 417
>PF10193 Telomere_reg-2: Telomere length regulation protein; InterPro: IPR019337 This entry represents a conserved domain found in a group of proteins called telomere-length regulation, or clock abnormal protein-2, which are conserved from plants to humans. These proteins regulate telomere length and contribute to silencing of sub-telomeric regions []. In vitro the protein binds to telomeric DNA repeats. ; PDB: 3O4Z_B.
Probab=22.58 E-value=4.7e+02 Score=22.91 Aligned_cols=82 Identities=15% Similarity=0.166 Sum_probs=42.0
Q ss_pred chHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhHh---hhHhhHhhhhHHHHHHHhhccCccccchhhHHHHHHHHHH
Q 001487 500 YLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQE---HFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVG 576 (1069)
Q Consensus 500 ~l~~i~~~l~~~l~~~~~~v~~~al~~l~~l~~~~~~---~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~l~ 576 (1069)
|+.+++..|..- +.+.+..+.++.+...+++.-.. ++..|...++..|..+=.+...++....|.+|+-++ +
T Consensus 4 YlrDll~~L~~~--~~~~e~~e~aL~~a~~LIR~k~~fg~el~~~a~eL~~~Ll~L~~~f~~~~Fe~~R~~alval---~ 78 (114)
T PF10193_consen 4 YLRDLLEYLRSD--DEDYEKFEAALKSAEKLIRRKPDFGTELSEYAEELLKALLHLQNKFDIENFEELRQNALVAL---V 78 (114)
T ss_dssp -HHHHHHHHT--------S-SHHHHHHHHHHHHS-----SSHHHHHHHHHHHHHH---TT--TTTTHHHHHHHHHH---H
T ss_pred hHHHHHHHHhcC--cCCHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhccccCCccCHHHHHHHHHHHH---H
Confidence 555555544321 12466778899999999987655 778888888888877533333334445666554433 3
Q ss_pred HhhChhhhhhh
Q 001487 577 MAVGKDKFRDD 587 (1069)
Q Consensus 577 ~~~~~~~~~~~ 587 (1069)
...+ +...||
T Consensus 79 v~~P-~~~~~~ 88 (114)
T PF10193_consen 79 VAAP-EKVAPY 88 (114)
T ss_dssp HHSG-GGHHH-
T ss_pred HHhh-HHHHHH
Confidence 3333 555555
No 418
>cd00871 PI4Ka Phosphoinositide 4-kinase(PI4K), accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. PI4K phosphorylates hydroxylgroup at position 4 on the inositol ring of phosphoinositide, the first commited step in the phosphatidylinositol cycle.
Probab=22.56 E-value=6.8e+02 Score=23.99 Aligned_cols=64 Identities=14% Similarity=0.131 Sum_probs=38.0
Q ss_pred HHHHHHHHHHhhhcCchHHHHHHHHHHcc--CCCHHHHHHHHHHHHhhcccCCCCcccCCCHHHHHHHHHHHHHHHhhcc
Q 001487 39 RSEAELLFNLCKQQDPDSLTLKLAHLLQR--SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLES 116 (1069)
Q Consensus 39 r~~A~~~L~~~~~~~p~~~~~~L~~il~~--~~~~~~R~~a~i~L~~~i~~~~~~~w~~l~~~~~~~i~~~ll~~l~~e~ 116 (1069)
...+.+.|..+..-+|. .-++.|.. ..++.+|+.|...|++ .+++.......+|.|.|.-|.
T Consensus 55 ~~~~l~~Ll~W~pi~p~----~ALell~~~y~~~~~Vr~yAvr~L~~------------~~~e~l~~YlpQLVQaLryd~ 118 (175)
T cd00871 55 NSPDLKYLLYWAPVSPV----QALSLFTPQYPGHPLVLQYAVRVLES------------YPVETVFFYIPQIVQALRYDK 118 (175)
T ss_pred HHHHHHHHcCCCCCCHH----HHHHHhCcccCCCHHHHHHHHHHHHh------------CCHHHHHHHHHHHHHHHhccc
Confidence 33344444455443332 23344432 4468888888888866 356666677777888888764
Q ss_pred hh
Q 001487 117 AK 118 (1069)
Q Consensus 117 ~~ 118 (1069)
..
T Consensus 119 ~~ 120 (175)
T cd00871 119 MG 120 (175)
T ss_pred cc
Confidence 33
No 419
>KOG2200 consensus Tumour suppressor protein p122-RhoGAP/DLC1 [Signal transduction mechanisms]
Probab=22.52 E-value=2.5e+02 Score=32.07 Aligned_cols=134 Identities=16% Similarity=0.099 Sum_probs=80.4
Q ss_pred HHHHHHHHHhHhhhhhhhhhHhHHHHHHhhccCCChhHHHhhhHHHHHHHhhcCCCchHHHHHHHHHHHHhhcCCCCCCh
Q 001487 902 AICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQP 981 (1069)
Q Consensus 902 a~~~l~~l~~~~~~~~~~~~~~l~~~ll~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~~ 981 (1069)
+...+..++..+++.+. ..+..+.|+.-.+-.....|-.| +.-++...|+.=...+..+|..|.+++... +
T Consensus 373 vAdlLKqffRdLPePL~--t~k~~~aF~~i~~~~pkkqrlqA---l~~aillLPDeNReaLktLL~FL~~V~an~----e 443 (674)
T KOG2200|consen 373 VADLLKQFFRDLPEPLF--TVKYSEAFAQIYQLVPKKQRLQA---LQLAILLLPDENREALKTLLEFLNDVIANE----E 443 (674)
T ss_pred HHHHHHHHHHhCCcccc--hhhHHHHHHHHHhcCcHHHHHHH---HHHHHHhCCcccHHHHHHHHHHHHHHHHhH----h
Confidence 55678888888877542 34555666665555555555444 455555667766777888888888887643 2
Q ss_pred hhhhhHHHHHHHHHHHHhhcCCCCCHhhHHHHHH-----hhCCCCCcHHHHHHHHHHHHHHHhhcCCcccC
Q 001487 982 ENLMAYDNAVSALGKICQFHRDSIDAAQVVPAWL-----NCLPIKGDLIEAKIVHEQLCSMVERSDSDLLG 1047 (1069)
Q Consensus 982 ~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~l-----~~lp~~~d~~~~~~~~~~l~~l~~~~~~~~~~ 1047 (1069)
++.++-.|..-|++==+-.... .+.+ .-|.+- -..|-..|..++..+..++..|| +|-..++.
T Consensus 444 ~N~MT~~NlsvcmAPsLF~l~~-~~~d-~spr~~~~k~~~g~p~~kel~~a~aaa~~l~~mI-~y~k~Lf~ 511 (674)
T KOG2200|consen 444 ENQMTLMNLSVCMAPSLFHLNA-LKLD-SSPRVRQKKSETGKPDQKELNEALAAAQGLAHMI-KYQKLLFT 511 (674)
T ss_pred hcccchhhhhhhhcchHHhhcc-CCCC-CCccccccccccCCCchHHHHHHHHHHHHHHHHH-HHHHHHhh
Confidence 3567778887776532111110 1111 111111 23455566778888999998888 56666665
No 420
>PF08620 RPAP1_C: RPAP1-like, C-terminal; InterPro: IPR013929 Inhibition of RNA polymerase II-associated protein 1 (RPAP1) synthesis in Saccharomyces cerevisiae (Baker's yeast) results in changes in global gene expression that are similar to those caused by the loss of the RNAPII subunit Rpb11 []. This entry represents the C-terminal region that contains the motif GLHHH. This region is conserved from yeast to humans.
Probab=22.45 E-value=1.5e+02 Score=23.38 Aligned_cols=30 Identities=10% Similarity=0.054 Sum_probs=26.5
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHhhhhh
Q 001487 145 LPFMFQCVSSDSVKLQESAFLIFAQLSQYI 174 (1069)
Q Consensus 145 l~~l~~~~~~~~~~~r~~al~~l~~l~~~~ 174 (1069)
++.++.+..|..+.+|..|+.+|+.|+...
T Consensus 41 i~El~~L~RSsv~~QR~~al~~L~~Il~~~ 70 (73)
T PF08620_consen 41 IQELFHLSRSSVPSQRCIALQTLGRILYRA 70 (73)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 788888899999999999999999988654
No 421
>cd00872 PI3Ka_I Phosphoinositide 3-kinase (PI3K) class I, accessory domain ; PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3K class I prefer phosphoinositol (4,5)-bisphosphate as a substrate. Mammalian members interact with active Ras. They form heterodimers with adapter molecules linking them to different signaling pathways.
Probab=21.48 E-value=7.2e+02 Score=23.74 Aligned_cols=96 Identities=17% Similarity=0.288 Sum_probs=53.2
Q ss_pred hHHHHHHHHHHHHhhhcCchHHHHHHHHHHccCCCHHHHHHHHHHHHhhcccCCCCcccCCCHHHHHHHHHHHHHHHhhc
Q 001487 36 NEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLE 115 (1069)
Q Consensus 36 ~~~r~~A~~~L~~~~~~~p~~~~~~L~~il~~~~~~~~R~~a~i~L~~~i~~~~~~~w~~l~~~~~~~i~~~ll~~l~~e 115 (1069)
.+.+..--+.=..+.+ +|.+ ++.++.-.. -.++.-..-+-.+|++ |..++++.. ++.|...
T Consensus 21 ~eek~llW~~R~~~~~-~p~a-L~~~l~sv~-w~~~~~v~e~~~lL~~---------W~~i~~~~a-------LeLL~~~ 81 (171)
T cd00872 21 EEDKELLWKLRHECRK-KPQA-LPKLLLSVK-WNKRDDVAQMYQLLKR---------WPKLKPEQA-------LELLDCN 81 (171)
T ss_pred HHHHHHHHHHHHHHhh-CcHH-HHHHHhhCC-CCCHHHHHHHHHHHHC---------CCCCCHHHH-------HHHCCCc
Confidence 3344433333223444 6765 455554332 2233333333334433 999888764 3444432
Q ss_pred -chhhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCC
Q 001487 116 -SAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSD 155 (1069)
Q Consensus 116 -~~~~vr~~~~~~i~~i~~~~~~~~~w~~ll~~l~~~~~~~ 155 (1069)
++..||+.+.+.+..+. .+..-..+|.|+|.++-.
T Consensus 82 f~d~~VR~yAV~~L~~~s-----d~eL~~yL~QLVQaLKyE 117 (171)
T cd00872 82 FPDEHVREFAVRCLEKLS-----DDELLQYLLQLVQVLKYE 117 (171)
T ss_pred CCCHHHHHHHHHHHHhCC-----HHHHHHHHHHHHHHHHcc
Confidence 57889999888887533 245667788888888754
No 422
>PF14228 MOR2-PAG1_mid: Cell morphogenesis central region
Probab=21.14 E-value=1.9e+03 Score=28.45 Aligned_cols=58 Identities=14% Similarity=-0.003 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHhHhhhhhhhhhHhHHHHHHhhccCCChhHHHhhhHHHHHHHhhc
Q 001487 897 EERRIAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFG 954 (1069)
Q Consensus 897 ~~r~~a~~~l~~l~~~~~~~~~~~~~~l~~~ll~~l~~~~~~vr~~a~~~lg~l~~~~ 954 (1069)
..-+.++-.|.+++-.......+++|.++..++-.+....+.|+..|-..|-.|+...
T Consensus 931 s~~qlalifL~dl~~~~~~~~~~~lP~LLH~~~~~lDH~~~~V~e~a~~lL~~Li~~l 988 (1120)
T PF14228_consen 931 SRGQLALIFLVDLAVEPDEDLREHLPLLLHVIFVLLDHYTPLVQEQARELLVNLIHSL 988 (1120)
T ss_pred cHHHHHHHHHHHHHcCCcchHhhhhHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHH
Confidence 3457788889999877666667789999998888888888999999998888877654
No 423
>cd03571 ENTH_epsin ENTH domain, Epsin family; The epsin (Eps15 interactor) N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the trans-Golgi network, which suggests that E/ANTH domains are univ
Probab=20.65 E-value=6.1e+02 Score=22.61 Aligned_cols=90 Identities=17% Similarity=0.156 Sum_probs=53.2
Q ss_pred hhhHHHHHHHHHHHcCCccchHHHHHHHHHhhcCC--ChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHh--hCC--
Q 001487 355 YSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAP--EWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLN--SFR-- 428 (1069)
Q Consensus 355 ~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~--~~~~r~aal~~l~~l~~~~~~~~~~~~~~i~~~l~~--~l~-- 428 (1069)
|......+..++..--...-++.++..+-..+.+. +|+.-+-++..+..+....++.+...+..-+..|-. .++
T Consensus 15 wGp~~~~m~eIa~~t~~~~~~~~Im~~l~kRL~~~~k~WR~vyKaL~lleyLl~nGse~vv~~~r~~~~~i~~L~~F~~~ 94 (123)
T cd03571 15 WGPSGTLMAEIARATYNYVEFQEIMSMLWKRLNDKGKNWRHVYKALTLLEYLLKNGSERVVDDARENLYIIRTLKDFQYI 94 (123)
T ss_pred CCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhCCHHHHHHHHHhHHHHHhhccceee
Confidence 33444556666654322345667788887777654 899999999999998877666444444433222211 111
Q ss_pred C-----CChhHHHHHHHHHHH
Q 001487 429 D-----PHPRVRWAAINAIGQ 444 (1069)
Q Consensus 429 d-----~~~~vr~~a~~~l~~ 444 (1069)
| .-..||..|-..+..
T Consensus 95 d~~g~d~G~~VR~ka~~i~~L 115 (123)
T cd03571 95 DENGKDQGINVREKAKEILEL 115 (123)
T ss_pred CCCCCchhHHHHHHHHHHHHH
Confidence 2 224677776655543
No 424
>PF14228 MOR2-PAG1_mid: Cell morphogenesis central region
Probab=20.57 E-value=1.9e+03 Score=28.36 Aligned_cols=53 Identities=23% Similarity=0.252 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHccccHHHHHhHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHH
Q 001487 249 QEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAE 303 (1069)
Q Consensus 249 ~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~ 303 (1069)
..++-.|.+++-.....+..|++.++...+-.+ .+...-++..|-++|..+..
T Consensus 934 qlalifL~dl~~~~~~~~~~~lP~LLH~~~~~l--DH~~~~V~e~a~~lL~~Li~ 986 (1120)
T PF14228_consen 934 QLALIFLVDLAVEPDEDLREHLPLLLHVIFVLL--DHYTPLVQEQARELLVNLIH 986 (1120)
T ss_pred HHHHHHHHHHHcCCcchHhhhhHHHHHHHHHcc--cCCChHHHHHHHHHHHHHHH
Confidence 346677778877677788899999888777655 34567777777777666654
No 425
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=20.08 E-value=1.3e+03 Score=26.35 Aligned_cols=77 Identities=18% Similarity=0.208 Sum_probs=48.6
Q ss_pred HhHHHHHHhhccC-CChhHHHhhhHHHHHHHhhcCCCc---------hHH-----HHHHHHHHHHhhcCCCCCChhhhhh
Q 001487 922 ETYLPFLLEACND-ENQDVRQAAVYGLGVCAEFGGSVV---------KPL-----VGEALSRLNVVIRHPNALQPENLMA 986 (1069)
Q Consensus 922 ~~l~~~ll~~l~~-~~~~vr~~a~~~lg~l~~~~~~~~---------~~~-----~~~~l~~L~~~l~~~~~~~~~~~~~ 986 (1069)
..+++.+++.+.. .++.+..+|+..|..++..+.... .+. -++.+..|...+.... ....
T Consensus 61 q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~-----~~s~ 135 (475)
T PF04499_consen 61 QNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQ-----GGSS 135 (475)
T ss_pred hCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHhChHHHHHHHHHHhcCC-----Ccch
Confidence 5788888888864 468899999999999887664211 111 1445565656554321 1245
Q ss_pred HHHHHHHHHHHHhhcCC
Q 001487 987 YDNAVSALGKICQFHRD 1003 (1069)
Q Consensus 987 ~~~~~~~l~~i~~~~~~ 1003 (1069)
-.|+++-+-.+++..+.
T Consensus 136 lvn~v~IlieLIRknns 152 (475)
T PF04499_consen 136 LVNGVSILIELIRKNNS 152 (475)
T ss_pred HHHHHHHHHHHHHhccc
Confidence 66677777777766543
Done!