Query 001487
Match_columns 1069
No_of_seqs 327 out of 3102
Neff 10.9
Searched_HMMs 29240
Date Tue Mar 26 16:30:47 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001487.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_788-792//hhsearch_pdb/001487hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fdd_A Transportin-1; heat rep 1.0 1 1 560.7 73.3 768 17-1048 5-793 (852)
2 1u6g_C TIP120 protein, CAND1; 1.0 1 1 506.7 67.2 949 17-1066 1-1155(1230)
3 2bpt_A Importin beta-1 subunit 1.0 1 1 506.1 80.6 799 19-952 1-857 (861)
4 1qgr_A Protein (importin beta 1.0 1 1 488.1 75.5 806 23-955 2-874 (876)
5 1wa5_C Importin alpha RE-expor 1.0 1 1 407.7 73.4 686 20-784 3-778 (960)
6 2x1g_F Cadmus; transport prote 1.0 1 1 388.4 54.6 518 19-555 4-639 (971)
7 2x19_B Importin-13; nuclear tr 1.0 1 1 385.1 62.5 544 19-580 21-652 (963)
8 1u6g_C TIP120 protein, CAND1; 1.0 1 1 370.1 71.1 925 58-1062 8-1111(1230)
9 1qgr_A Protein (importin beta 1.0 1 1 363.3 71.0 771 68-1003 12-875 (876)
10 3m1i_C Exportin-1; heat repeat 1.0 1 1 360.3 72.2 564 18-597 12-695 (1049)
No 1
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=1.00 E-value=1 Score=560.72 Aligned_cols=768 Identities=19% Similarity=0.274 Sum_probs=598.3
Q ss_pred HCCCH---HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHC--CCCCHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 09991---789999999608995898999999988650192489999999980--6999779998999999640458887
Q 001487 17 LGPDS---APFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQ--RSPHPEARAMAAVLLRKLLTRDDSF 91 (1069)
Q Consensus 17 ~~~~~---~~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~~p~~~~~~L~~il~--~~~~~~vR~~a~i~L~~~i~~~~~~ 91 (1069)
|.+++ +++.++|+.+++||++.|++||++|+++++ +|++ ..+|.+++. ++.++.+|++|++.||+.+.++
T Consensus 5 w~~~~~~~~~l~~~l~~~~s~d~~~r~~Ae~~L~~~~~-~p~~-~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~--- 79 (852)
T 4fdd_A 5 WKPDEQGLQQILQLLKESQSPDTTIQRTVQQKLEQLNQ-YPDF-NNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAH--- 79 (852)
T ss_dssp CCCCHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHTT-SHHH-HHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTS---
T ss_pred CCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH-CCCH-HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHC---
T ss_conf 89984239999999998739498999999999999870-9988-999999985668898679999999999989874---
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 45578987999999999899841513659999999999998421699990015999999602998567889999999945
Q 001487 92 LWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLS 171 (1069)
Q Consensus 92 ~w~~l~~~~~~~i~~~ll~~l~~e~~~~ir~~~~~~i~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~ 171 (1069)
|..++++.+..+|..+++.+.+ +++.+|+.++.+++.|++.+++ +.||++++.+.+.+.++++.+|++++.+++.++
T Consensus 80 -w~~~~~~~~~~ik~~ll~~l~~-~~~~vr~~~a~~i~~ia~~~~~-~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~ 156 (852)
T 4fdd_A 80 -FQNFPNGVTDFIKSECLNNIGD-SSPLIRATVGILITTIASKGEL-QNWPDLLPKLCSLLDSEDYNTCEGAFGALQKIC 156 (852)
T ss_dssp -GGGCCHHHHHHHHHHHHTTTTC-SSHHHHHHHHHHHHHHHHHTTT-TTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHH
T ss_pred -CCCCCHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf -4779999999999999998749-9899999999999999986481-356899999999870999899999999999999
Q ss_pred HHHHHHCC-----HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHH
Q ss_conf 54431100-----0099999999985269999479999999999999830791128679756999999999998379967
Q 001487 172 QYIGDTLT-----PHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEA 246 (1069)
Q Consensus 172 ~~~~~~~~-----~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~ 246 (1069)
+..+..+. ...+.+++.+.+++.++ +..||..|++++..++...+ ..+...++.+++.+...+++++++
T Consensus 157 ~~~~~~~~~~~~~~~~~~il~~l~~~l~~~-~~~vR~~A~~aL~~~~~~~~-----~~~~~~~~~~l~~l~~~~~d~~~~ 230 (852)
T 4fdd_A 157 EDSAEILDSDVLDRPLNIMIPKFLQFFKHS-SPKIRSHAVACVNQFIISRT-----QALMLHIDSFIENLFALAGDEEPE 230 (852)
T ss_dssp HHHTTHHHHCSSSSCHHHHHHHHTTTTTCS-SHHHHHHHHHHHHTTTTTTC-----HHHHTSHHHHHHHHHHHHTCCCHH
T ss_pred HHHHHHHCHHHHCCHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHCCCCCHH
T ss_conf 985787563431332999999999985679-78999999999999986463-----879988999999999871799778
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHH
Q ss_conf 89999999999873240889995999999999973278744578899999999999831015223202445599999999
Q 001487 247 TAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAIL 326 (1069)
Q Consensus 247 ~~~~~~~~l~~l~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l 326 (1069)
+|..+++++..+++.+++.+.+|+..+++.++....+ .++.+|..++++|..+++.. ...+...+++..++|.+
T Consensus 231 vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~--~~~~vr~~a~e~l~~l~~~~----~~~~~~~~~~~~l~p~l 304 (852)
T 4fdd_A 231 VRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQD--QDENVALEACEFWLTLAEQP----ICKDVLVRHLPKLIPVL 304 (852)
T ss_dssp HHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTC--SSHHHHHHHHHHHHHHTTST----THHHHHTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHHCCH----HHHHHHHHHHHHHHHHH
T ss_conf 9999999999999857798998899999999987069--96899999999999986036----57988788898899999
Q ss_pred HHHHCCCCCCCCCCCCC-CCCCCC----CCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 98424789972223679-987554----6776020498999999987299643687997898843699967999999999
Q 001487 327 MSMLLDIEDDPLWHSAE-TEDEDA----GESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIAL 401 (1069)
Q Consensus 327 ~~~l~~~~~~~~~~~~~-~e~ed~----~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l 401 (1069)
+..|.+.+++.+|...+ ++|+++ ..+..++.+..+++.++...| +.+++.+++.+.+.+++++|++|++++.++
T Consensus 305 l~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~-~~~~~~l~~~l~~~l~~~~~~~R~aa~~al 383 (852)
T 4fdd_A 305 VNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYR-DELLPHILPLLKELLFHHEWVVKESGILVL 383 (852)
T ss_dssp HHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHG-GGGHHHHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred HHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 9875786767998669844322245640111699999999999987461-878999999999985599889999999999
Q ss_pred HHHHHHCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 99994238999971999999998517898864899999999986742142277522441589999612699994599999
Q 001487 402 AQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHA 481 (1069)
Q Consensus 402 ~~l~~~~~~~~~~~~~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a 481 (1069)
+.+++++++.+.++++.+++.++..++|+++.||.+++++++.++++.++.....+...+++.+++.+.+ +++.||..+
T Consensus 384 g~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d-~~~~vr~~a 462 (852)
T 4fdd_A 384 GAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILD-SNKRVQEAA 462 (852)
T ss_dssp HHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTC-SSHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHC-CCHHHHHHH
T ss_conf 9998635688998799999999987179988999999999999998861104789999999999999858-988899999
Q ss_pred HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHCCCC
Q ss_conf 9999996511894333575699999999984148843999999999999995176557--54855669999999600672
Q 001487 482 ASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQ--KYYDAVMPFLKAILVNATDK 559 (1069)
Q Consensus 482 ~~al~~l~~~~~~~~~~~~l~~i~~~l~~~l~~~~~~v~~~al~~l~~l~~~~~~~~~--~~~~~i~~~l~~~l~~~~~~ 559 (1069)
++++..+++..+.. +.||++.+++.+...++..+......++.+++.++...+..+. +|++.++|.+.+.+....+.
T Consensus 463 ~~aL~~l~~~~~~~-l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~ 541 (852)
T 4fdd_A 463 CSAFATLEEEACTE-LVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDE 541 (852)
T ss_dssp HHHHHHHHHHHGGG-GGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999999973676-67679999999999998837479999999999999974243136789999889999998733304
Q ss_pred CCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf 10001469999999999752722126639999999999835889999801269999999999780378643226635999
Q 001487 560 SNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPL 639 (1069)
Q Consensus 560 ~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~l 639 (1069)
...++ .+++|++.++.++| ..|.||++.+++.++.
T Consensus 542 -~~~~~-~~~~~l~~i~~~~g-~~~~~~~~~i~~~~~~------------------------------------------ 576 (852)
T 4fdd_A 542 -DKDLF-PLLECLSSVATALQ-SGFLPYCEPVYQRCVN------------------------------------------ 576 (852)
T ss_dssp -CTTHH-HHHHHHHHHHHHHG-GGGHHHHHHHHHHHHH------------------------------------------
T ss_pred -CHHHH-HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH------------------------------------------
T ss_conf -69999-99999999999974-8679889999999999------------------------------------------
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 98615699832258897654346887531032138912453020599999999999999999301041319988998700
Q 001487 640 LQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVP 719 (1069)
Q Consensus 640 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~a~~~l~~l~~~~~~~~~p~~~~~~~~l~~ 719 (1069)
.+
T Consensus 577 --~l---------------------------------------------------------------------------- 578 (852)
T 4fdd_A 577 --LV---------------------------------------------------------------------------- 578 (852)
T ss_dssp --HH----------------------------------------------------------------------------
T ss_pred --HH----------------------------------------------------------------------------
T ss_conf --99----------------------------------------------------------------------------
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 13876996799999984899999999999808999999799999999999999999800993989999999999999984
Q 001487 720 LLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQIS 799 (1069)
Q Consensus 720 ~l~~~~~~~ir~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~v~~~~l~~l~~~i~~~ 799 (1069)
... +.... .....
T Consensus 579 --~~~---------------l~~~~-----------------------------~~~~~--------------------- 591 (852)
T 4fdd_A 579 --QKT---------------LAQAM-----------------------------LNNAQ--------------------- 591 (852)
T ss_dssp --HHH---------------HHHHH-----------------------------HHHHC---------------------
T ss_pred --HHH---------------HHHHH-----------------------------HHHCC---------------------
T ss_conf --999---------------99998-----------------------------75338---------------------
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
Q ss_conf 99999988999999999999988866999999720778886764575553366999999999999999998112205649
Q 001487 800 GPLLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVFDQVGEILGTLIKTFKAAFLPFF 879 (1069)
Q Consensus 800 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~ 879 (1069)
.+..++ .+..++..+.+.++.+++..+..+.+++
T Consensus 592 -----------------------------------~~~~~~-----------~d~~~~~~~l~~l~~l~~~l~~~~~~~~ 625 (852)
T 4fdd_A 592 -----------------------------------PDQYEA-----------PDKDFMIVALDLLSGLAEGLGGNIEQLV 625 (852)
T ss_dssp -----------------------------------TTTSCC-----------CCTHHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred -----------------------------------CCCCCC-----------CCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf -----------------------------------866688-----------7611999999999789998747699883
Q ss_pred --HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf --998865653206999888899999979999767225666425748999996626999468886658997998421987
Q 001487 880 --DELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSV 957 (1069)
Q Consensus 880 --~~l~~~l~~~l~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~i~~~ll~~l~~~~~~vr~~a~~~lg~l~~~~~~~ 957 (1069)
..+++.+...+ .+++.++|..++.++++++..++..+.+|++.++|.+...+.+.++.+|++|++++|.++...+..
T Consensus 626 ~~~~~~~~l~~~l-~~~~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~~~~ 704 (852)
T 4fdd_A 626 ARSNILTLMYQCM-QDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIE 704 (852)
T ss_dssp HTCCHHHHHHHHT-TCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHGGG
T ss_pred CCCCHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 6771899999983-899844999999999999998168889879999999998769420689999999999999971176
Q ss_pred CHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 068899999999986159987880335568789999999986538999--976499999860899886898899999999
Q 001487 958 VKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQFHRDSI--DAAQVVPAWLNCLPIKGDLIEAKIVHEQLC 1035 (1069)
Q Consensus 958 ~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~--~~~~~~~~~l~~lp~~~d~~~~~~~~~~l~ 1035 (1069)
+.||+..+++.|.+++..++. ...+++|++.++||++..+|+.+ +++++++.|+..||.++|.+|+..++++||
T Consensus 705 ~~p~~~~il~~L~~~l~~~~~----~~~~~~~a~~~igrl~~~~~~~~~~~l~~~~~~~~~~l~~~~d~~e~~~a~~~l~ 780 (852)
T 4fdd_A 705 MQPYIPMVLHQLVEIINRPNT----PKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGIC 780 (852)
T ss_dssp GGGGTHHHHHHHHHHHTCSSC----CHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHTSCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCC----CCHHHHHHHHHHHHHHHHCHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 787899999999998579988----7207788999999999868897675589999999998653666079999999999
Q ss_pred HHHHHCCCCCCCC
Q ss_conf 9985159843386
Q 001487 1036 SMVERSDSDLLGP 1048 (1069)
Q Consensus 1036 ~l~~~~~~~~~~~ 1048 (1069)
.+++.+|+.+.+.
T Consensus 781 ~li~~~p~~~~~~ 793 (852)
T 4fdd_A 781 TMISVNPSGVIQD 793 (852)
T ss_dssp HHHHHCGGGTGGG
T ss_pred HHHHHCHHHHHHH
T ss_conf 9998691868888
No 2
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=1.00 E-value=1 Score=506.69 Aligned_cols=949 Identities=13% Similarity=0.164 Sum_probs=651.1
Q ss_pred HCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC--------CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 0999178999999960899589899999998865019--------24899999999806999779998999999640458
Q 001487 17 LGPDSAPFETLISHLMSTSNEQRSEAELLFNLCKQQD--------PDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRD 88 (1069)
Q Consensus 17 ~~~~~~~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~~--------p~~~~~~L~~il~~~~~~~vR~~a~i~L~~~i~~~ 88 (1069)
|+.+..++.++|..+.+||++.|.+|++.|.+..+.. ++..+..+++.+. +.++.+|+.|+..|.+....
T Consensus 1 ~~~~~~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~-d~~~~vR~~A~~~L~~l~~~- 78 (1230)
T 1u6g_C 1 MASASYHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLE-DKNGEVQNLAVKCLGPLVSK- 78 (1230)
T ss_dssp ---CCHHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTT-CSSHHHHHHHHHHHHHHHTT-
T ss_pred CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHH-
T ss_conf 9836769999997558987859999999999997416657875679999999999866-99989999999999999975-
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCC--------CCHHHHHHHHHHHC-CCCHHH
Q ss_conf 887455789879999999998998415136599999999999984216999--------90015999999602-998567
Q 001487 89 DSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPEN--------GWPELLPFMFQCVS-SDSVKL 159 (1069)
Q Consensus 89 ~~~~w~~l~~~~~~~i~~~ll~~l~~e~~~~ir~~~~~~i~~i~~~~~~~~--------~w~~ll~~l~~~l~-~~~~~~ 159 (1069)
++++....++..+++.+.+ ++..+|..++.+++.++....+.. .|++++|.+...+. ++++.+
T Consensus 79 -------~~~~~~~~i~~~Ll~~l~d-~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~ 150 (1230)
T 1u6g_C 79 -------VKEYQVETIVDTLCTNMLS-DKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSV 150 (1230)
T ss_dssp -------SCHHHHHHHHHHHHHHTTC-SSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHH
T ss_pred -------CCHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf -------8798999999999998669-83889999999999999967974444411788999999999998757884679
Q ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 88999999994554431100009999999998526999947999999999999983079112867975699999999999
Q 001487 160 QESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTES 239 (1069)
Q Consensus 160 r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~ 239 (1069)
|..++.++..+++..+..+.++.+.+++.+...+.++ +..||..++.+++.++...+. ..+..+++.+++.+..
T Consensus 151 ~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~-~~~vR~~a~~al~~l~~~~~~----~~~~~~l~~l~~~L~~- 224 (1230)
T 1u6g_C 151 QLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSP-RLAVRKRTIIALGHLVMSCGN----IVFVDLIEHLLSELSK- 224 (1230)
T ss_dssp HHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCS-SHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHCCH----HHHHHHHHHHHHHHCC-
T ss_conf 9999999999999827677887999999999987599-689999999999999985689----9999999999998616-
Q ss_pred HHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHCCHHHH
Q ss_conf 83799678999999999987324088999599999999997327874457889999999999983101522320244559
Q 001487 240 LNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFI 319 (1069)
Q Consensus 240 l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~ 319 (1069)
..+...|..++++++.++...+..+.+|+..+++.++..+.+ .++++|..+++++..+++. .+ ..+.+++
T Consensus 225 --~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d--~~~~vR~~a~~~l~~l~~~---~~---~~~~~~l 294 (1230)
T 1u6g_C 225 --NDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNV--DDDELREYCIQAFESFVRR---CP---KEVYPHV 294 (1230)
T ss_dssp --TCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSS--CCTTTHHHHHHHHHHHHHC---TT---CCCHHHH
T ss_pred --CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHH---CH---HHHHHHH
T ss_conf --775568999999999999986898998899999999998668--9778999999999999997---84---8777768
Q ss_pred HHHHHHHHHHHCCCCC-----CCCCCC------CCCCCC---------CCCCCCCHHHHHHHHHHHHHHCCC--CCCHHH
Q ss_conf 9999999984247899-----722236------799875---------546776020498999999987299--643687
Q 001487 320 NRLFAILMSMLLDIED-----DPLWHS------AETEDE---------DAGESSNYSVGQECLDRLAIALGG--NTIVPV 377 (1069)
Q Consensus 320 ~~l~~~l~~~l~~~~~-----~~~~~~------~~~e~e---------d~~~~~~~~~a~~~l~~l~~~~~~--~~~~~~ 377 (1069)
+.++|.++..+.+..+ +.+|.. .+++++ ++..|..+..+..++..++...+. ..+++.
T Consensus 295 ~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~ 374 (1230)
T 1u6g_C 295 STIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKT 374 (1230)
T ss_dssp HHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTT
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_conf 99999999982789988876441101122334465301100136664555677999999999999997466679999999
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHH-------------------CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 997898843699967999999999999942-------------------3899997199999999851789886489999
Q 001487 378 ASEQLPAYLAAPEWQKHHAALIALAQIAEG-------------------CAKVMVKNLEQVLSMVLNSFRDPHPRVRWAA 438 (1069)
Q Consensus 378 l~~~l~~~l~~~~~~~r~aal~~l~~l~~~-------------------~~~~~~~~~~~i~~~l~~~l~d~~~~vr~~a 438 (1069)
+++.+...+.+.+..+|.+++.+++.+... +...+..+++.+++.+...++++++.+|.++
T Consensus 375 l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~ 454 (1230)
T 1u6g_C 375 VSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCC 454 (1230)
T ss_dssp THHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 98999987179865799999999999999724243434675201356455999998746999999998613778799999
Q ss_pred HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 9999986742142277522441589999612699994--59999999999965118943335756999999999841488
Q 001487 439 INAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNP--RVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGK 516 (1069)
Q Consensus 439 ~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~--~v~~~a~~al~~l~~~~~~~~~~~~l~~i~~~l~~~l~~~~ 516 (1069)
+.+++.++...+..+ .++++.+++.++..+.+ +++ .++..++.++..+++..+++.+.||++.+++.++..+++.+
T Consensus 455 ~~~L~~l~~~~~~~l-~~~l~~ll~~l~~~L~d-~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~ 532 (1230)
T 1u6g_C 455 FNMLTELVNVLPGAL-TQHIPVLVPGIIFSLND-KSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPF 532 (1230)
T ss_dssp HHHHHHHHHHSTTTT-GGGHHHHHHHHHHHTTC-SSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSS
T ss_pred HHHHHHHHHHCHHHH-HHHHHHHHHHHHHHHCC-CCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 999999999761105-77799999999999748-7885168999999999999838988788679999999999971424
Q ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHH
Q ss_conf 43999999999999995176-------55754855669999999600672100014699999999997527221266399
Q 001487 517 QMVQEGALTALASVADSSQE-------HFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAK 589 (1069)
Q Consensus 517 ~~v~~~al~~l~~l~~~~~~-------~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~ 589 (1069)
..++..++.+++.++..++. .+.||++.++|.+...+... +....+|..++.+++.++...| +.+.++++
T Consensus 533 ~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~--d~~~~vr~~a~~~lg~L~~~~g-~~~~~~~~ 609 (1230)
T 1u6g_C 533 YKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAA--DIDQEVKERAISCMGQIICNLG-DNLGSDLP 609 (1230)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCS--SSCHHHHHHHHHHHHHHHHHTG-GGCCTHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHHHHHHC-CHHHHHHH
T ss_conf 68999999999999987167555653232789999999999987326--9988999999999999999827-03244388
Q ss_pred HHHHHHHHHHCCCC-------------------------------------CCCCCHHHHHHHHHHHHHHHHCC------
Q ss_conf 99999999835889-------------------------------------99980126999999999978037------
Q 001487 590 QVMEVLMSLQGSQM-------------------------------------ETDDPTTSYMLQAWARLCKCLGQ------ 626 (1069)
Q Consensus 590 ~i~~~l~~l~~~~~-------------------------------------~~~~~~~~~~~~~~~~l~~~~~~------ 626 (1069)
.+++.+........ +.+..+|..++.+++.++...+.
T Consensus 610 ~~l~~L~~~l~~e~~r~~~~~al~~i~~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~r~~a~~al~~l~~~~~~~~~~~~ 689 (1230)
T 1u6g_C 610 NTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAM 689 (1230)
T ss_dssp HHHHHHHHHTTSSSHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCCTTCCHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHH
T ss_conf 99999998844530599999999999818564436888999999999999867888999999999999960433389899
Q ss_pred ------------------------------------CCCCCHHHHHHHHHHHCCCCC--CCC-----------CCCCC--
Q ss_conf ------------------------------------864322663599998615699--832-----------25889--
Q 001487 627 ------------------------------------DFLPYMSVVMPPLLQSAQLKP--DVT-----------ITSAD-- 655 (1069)
Q Consensus 627 ------------------------------------~~~~~l~~i~~~ll~~~~~~~--~~~-----------~~~~~-- 655 (1069)
.+.++.+.+++.++..+.... +.. .....
T Consensus 690 v~~~l~~ll~ll~~~D~~~~~~~~~~L~~l~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~ 769 (1230)
T 1u6g_C 690 IDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNN 769 (1230)
T ss_dssp HHHHHTTCGGGSCTTCHHHHHHHHHHHHHHTTSCGGGGGGTTTTTHHHHHHHHTCTTCCHHHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99999998763575418789999999999988491267776776899999997586210578999999999998347887
Q ss_pred -CCCC--------CC-CCCC-CCCC---H-------HH--CCC--------CEEEECC--CHHHHHHHHHHHHHHHHHHH
Q ss_conf -7654--------34-6887-5310---3-------21--389--------1245302--05999999999999999993
Q 001487 656 -SDNE--------IE-DSDD-DSME---T-------IT--LGD--------KRIGIKT--SVLEEKATACNMLCCYADEL 702 (1069)
Q Consensus 656 -~~~~--------~~-~~~~-~~~~---~-------~~--~~~--------~~~~v~~--~~~~~k~~a~~~l~~l~~~~ 702 (1069)
.-.. .. +.++ ...+ . +. .++ ....+.+ .....+..++.+++.+...
T Consensus 770 ~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~- 848 (1230)
T 1u6g_C 770 LGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHH- 848 (1230)
T ss_dssp CSHHHHHHHHSTTTTTC----CCHHHHHHHHHHHHHHHHHSCCCSHHHHTTTTTTTTTTTCCHHHHHHHHHHHHHHHHH-
T ss_pred CCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCC-
T ss_conf 8899999998500357887320001048999999999984656668999999998378876679999999999986156-
Q ss_pred HHCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCH
Q ss_conf 01041319988998700138769967999999848999999999998089999997999999999999999998009939
Q 001487 703 KEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDT 782 (1069)
Q Consensus 703 ~~~~~p~~~~~~~~l~~~l~~~~~~~ir~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~ 782 (1069)
..+.++ +++.+.+.+.+.+. ++.||.+|..++|.+... . . +.++|.+++.+..+ +
T Consensus 849 -~~~~~~-~~l~~~~~~~l~~~-~~~Vr~aAa~aLg~l~~~-------------~---~----~~~lp~ll~~l~~~--~ 903 (1230)
T 1u6g_C 849 -IDLSGQ-LELKSVILEAFSSP-SEEVKSAASYALGSISVG-------------N---L----PEYLPFVLQEITSQ--P 903 (1230)
T ss_dssp -SCCCSC-THHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHH-------------T---H----HHHHHHHHHHHHSC--G
T ss_pred -CCCCCC-CCHHHHHHHHHCCC-CHHHHHHHHHHHHHHHCC-------------C---H----HHHHHHHHHHHHCC--C
T ss_conf -787656-41899999984799-778999999996877526-------------9---9----98899999987266--0
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89999999999999984999999889999999999999888669999997207788867645755533669999999999
Q 001487 783 EICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVFDQVGE 862 (1069)
Q Consensus 783 ~v~~~~l~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~~~~~~l~~~~~~ 862 (1069)
+.+...+.++.+++...+. +.+.++...+++.|..... + .++.++..+++
T Consensus 904 ~~~~~~l~al~e~i~~~~~----~~~~~~~~~i~~~L~~~~~------------~--------------~~~~~r~~~a~ 953 (1230)
T 1u6g_C 904 KRQYLLLHSLKEIISSASV----VGLKPYVENIWALLLKHCE------------C--------------AEEGTRNVVAE 953 (1230)
T ss_dssp GGHHHHHHHHHHHHHSSCS----TTTHHHHHHHHHHHTTCCC------------C--------------SSTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCH----HHHHHHHHHHHHHHHHHHC------------C--------------CCHHHHHHHHH
T ss_conf 3249889999999823876----6677669999999998733------------8--------------30446899998
Q ss_pred HHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 99999998112205649998865653206999888899999979999767225666425748999996626999468886
Q 001487 863 ILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQA 942 (1069)
Q Consensus 863 ~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~i~~~ll~~l~~~~~~vr~~ 942 (1069)
|+|.++...+..+. |.+...+ .+.++..|..++.+++.++...+..+.++++.+++.++..++|++..||++
T Consensus 954 ~lg~l~~~~~~~l~-------p~l~~~l-~~~~~~~R~~~~~~l~~~~~~~~~~~~~~l~~~~~~ll~~l~d~~~~vr~~ 1025 (1230)
T 1u6g_C 954 CLGKLTLIDPETLL-------PRLKGYL-ISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRV 1025 (1230)
T ss_dssp HHHHHHHSSGGGTH-------HHHTTTS-SSSCHHHHHHHHHHTGGGCCSSCCTHHHHHHHHSTTTHHHHSSSSTHHHHH
T ss_pred HHHHHHCCCHHHHH-------HHHHHHH-CCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf 87566506768888-------9999985-699788999999999999706823358989998999998648985879999
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCC------------CCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 658997998421987068899999999986159987------------88033556878999999998653899997649
Q 001487 943 AVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNA------------LQPENLMAYDNAVSALGKICQFHRDSIDAAQV 1010 (1069)
Q Consensus 943 a~~~lg~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~------------~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 1010 (1069)
|+++++.+++..|+.+.+++..+++.|++.+..++. ..|++.++|++|.+|+++++.++.+.+++.++
T Consensus 1026 a~~~l~~~~~~~~~~~~~~l~~~lp~l~~~~~~~~~~~~~v~~gp~k~~vd~~l~~rk~a~~~~~~ll~~~~~~i~~~~~ 1105 (1230)
T 1u6g_C 1026 ALVTFNSAAHNKPSLIRDLLDTVLPHLYNETKVRKELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSCLDRLDIFEF 1105 (1230)
T ss_dssp HHHHHHHHHHHCGGGTGGGHHHHHHHHHHTTSCCGGGEEEEEETTEEEEEETHHHHHHHHHHHHHHHHHSSCSSSCHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHH
T ss_conf 99999999842857689779889899998830268760133058960236774899999999999999988874789999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 99998608998868988999999999985159843386767734899999997300
Q 001487 1011 VPAWLNCLPIKGDLIEAKIVHEQLCSMVERSDSDLLGPNHQYLPKIVSVFAEVSSC 1066 (1069)
Q Consensus 1011 ~~~~l~~lp~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 1066 (1069)
++.|+..||. |.+.+..+|..+.+|+...|+.+.+. +++++..+..++..
T Consensus 1106 ~~~~~~gl~d--~~di~~~~~~~l~~l~~~~~~~~~~~----~~~~~~~~~~~l~~ 1155 (1230)
T 1u6g_C 1106 LNHVEDGLKD--HYDIKMLTFLMLVRLSTLCPSAVLQR----LDRLVEPLRATCTT 1155 (1230)
T ss_dssp HHHHHHTTSS--CHHHHHHHHHHHHHHHHSCCHHHHTT----TTTTHHHHHHHHHC
T ss_pred HHHHHCCCCC--HHHHHHHHHHHHHHHHHCCHHHHHHH----HHHHHHHHHHHHHH
T ss_conf 9999804676--68899999999999984087989999----99999999999841
No 3
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=1.00 E-value=1 Score=506.07 Aligned_cols=799 Identities=17% Similarity=0.258 Sum_probs=629.2
Q ss_pred CCHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHCCCCC-------
Q ss_conf 9917899999996-0899589899999998865019248999999998069-997799989999996404588-------
Q 001487 19 PDSAPFETLISHL-MSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRS-PHPEARAMAAVLLRKLLTRDD------- 89 (1069)
Q Consensus 19 ~~~~~l~~ll~~~-~s~d~~~r~~A~~~L~~~~~~~p~~~~~~L~~il~~~-~~~~vR~~a~i~L~~~i~~~~------- 89 (1069)
||++++.++|..+ ++||++.|++|+++|+++.+++++.+...|++++.++ .++.+|++|+++||+.+.++|
T Consensus 1 Md~~~l~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~l~~il~~~~~~~~vR~~A~~~lk~~i~~~w~~~~~~~ 80 (861)
T 2bpt_A 1 MSTAEFAQLLENSILSPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQF 80 (861)
T ss_dssp CCHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHH
T ss_pred CCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 98779999999742693979999999999999851999999999999837899867999999998702257574878999
Q ss_pred CCCCCC-CCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCC-CHHHHHHHHHHH
Q ss_conf 874557-898799999999989984151365999999999999842169999001599999960299-856788999999
Q 001487 90 SFLWPR-LSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSD-SVKLQESAFLIF 167 (1069)
Q Consensus 90 ~~~w~~-l~~~~~~~i~~~ll~~l~~e~~~~ir~~~~~~i~~i~~~~~~~~~w~~ll~~l~~~l~~~-~~~~r~~al~~l 167 (1069)
...|.. ++++.+..+|+.+++.+.+ ++..+|+.++.+++.+++.++|.+.||++++.+.+.+.++ ++..|++++.++
T Consensus 81 ~~~~~~~l~~~~~~~ik~~ll~~l~~-~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l 159 (861)
T 2bpt_A 81 AQRWITQVSPEAKNQIKTNALTALVS-IEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLAL 159 (861)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 97676629999999999999998779-96379999999999999846764554999999999872689789999999999
Q ss_pred HHHHHHHHHH---CCHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9945544311---00009999999998526999-9479999999999999830791128679756999999999998379
Q 001487 168 AQLSQYIGDT---LTPHLKHLHAVFLNCLTNSN-NPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNG 243 (1069)
Q Consensus 168 ~~l~~~~~~~---~~~~~~~l~~~l~~~l~~~~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~ 243 (1069)
+.+++..++. +.++.+.+++.+...+.++. +..||..++++++.++.++....... ...+.+++.+...+++.
T Consensus 160 ~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~---~~~~~ll~~l~~~~~~~ 236 (861)
T 2bpt_A 160 GYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMERE---GERNYLMQVVCEATQAE 236 (861)
T ss_dssp HHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSH---HHHHHHHHHHHHHHTCS
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCH---HHHHHHHHHHHHHHCCC
T ss_conf 999972784356789889999999998415799987899999999999999999870676---68999999999986599
Q ss_pred CHHHHHHHHHHHHHHHCCCCHHHHHHHH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCC----------CHHH
Q ss_conf 9678999999999987324088999599-9999999973278744578899999999999831015----------2232
Q 001487 244 NEATAQEALELLIELAGTEPRFLRRQLV-DVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERA----------PGMM 312 (1069)
Q Consensus 244 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~----------~~~~ 312 (1069)
++.+|..++.++..+++.++..+.+++. .+++.++..+. +.++.+|..++++|..+++..... |...
T Consensus 237 ~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~--~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 314 (861)
T 2bpt_A 237 DIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMK--SPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQS 314 (861)
T ss_dssp CHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTT--CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf 8899999999999999998899999889999999999873--77278999999999999987886433321035773256
Q ss_pred -HCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCH
Q ss_conf -0244559999999998424789972223679987554677602049899999998729964368799789884369996
Q 001487 313 -RKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEW 391 (1069)
Q Consensus 313 -~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~ 391 (1069)
+...+++..++|.++..+.+.+++ ++++++..+..+..++..++..++ +.+++.+++.+.+.+++++|
T Consensus 315 ~~~~~~~~~~il~~ll~~l~~~~~d----------~~d~~~~~r~~a~~~L~~l~~~~~-~~~~~~l~~~l~~~l~~~~~ 383 (861)
T 2bpt_A 315 YNFALSSIKDVVPNLLNLLTRQNED----------PEDDDWNVSMSAGACLQLFAQNCG-NHILEPVLEFVEQNITADNW 383 (861)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCCCCC-----------CCCCCHHHHHHHHHHHHHHHHHG-GGGHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCC----------CCCCCCCHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHCCCCCH
T ss_conf 9999999988999999998706653----------012468689999999999998740-86899999999987579972
Q ss_pred HHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCHHH-HHHHHHHHHHHHHHHC
Q ss_conf 799999999999994238-99997199999999851789886489999999998674214227-7522441589999612
Q 001487 392 QKHHAALIALAQIAEGCA-KVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDL-QNQFHPQVLPALAGAM 469 (1069)
Q Consensus 392 ~~r~aal~~l~~l~~~~~-~~~~~~~~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~-~~~~~~~il~~l~~~l 469 (1069)
+.|++++.+++.+++++. +.+.++++.+++.+...+.|+++.||.++++++++++..+++.+ ...+++.+++.++..+
T Consensus 384 ~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l 463 (861)
T 2bpt_A 384 RNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGL 463 (861)
T ss_dssp HHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 69999999999998599878889989999999998828995999999999999999873540487888999999999976
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCC---CCCCCCCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 699994599999999999651189---43335756999999999841488--4399999999999999517655754855
Q 001487 470 DDFQNPRVQAHAASAVLNFSENCT---PEILTPYLDGIVSKLLVLLQNGK--QMVQEGALTALASVADSSQEHFQKYYDA 544 (1069)
Q Consensus 470 ~~~~~~~v~~~a~~al~~l~~~~~---~~~~~~~l~~i~~~l~~~l~~~~--~~v~~~al~~l~~l~~~~~~~~~~~~~~ 544 (1069)
.+ + +.+|..+++++..+++.++ +..+.||++.+++.+...+.+.+ ..+|..++.+++.++...+..+.+|++.
T Consensus 464 ~~-~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~ 541 (861)
T 2bpt_A 464 QD-H-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSAS 541 (861)
T ss_dssp TS-C-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHH
T ss_pred CC-C-HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf 44-7-289999999999999862313542468999999999999985758615899999999999999762656999999
Q ss_pred HHHHHHHHHHHCC-------C----CCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCC-CHHHH
Q ss_conf 6699999996006-------7----2100014699999999997527221266399999999998358899998-01269
Q 001487 545 VMPFLKAILVNAT-------D----KSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDD-PTTSY 612 (1069)
Q Consensus 545 i~~~l~~~l~~~~-------~----~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~-~~~~~ 612 (1069)
++|.+.+.+.... + +....+|..++.+++.++..+| ..+.|+++.+++.+....... +. .++..
T Consensus 542 l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~-~~~~~~~~~l~~~l~~~l~~~---~~~~v~~~ 617 (861)
T 2bpt_A 542 ISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSP-SSVEPVADMLMGLFFRLLEKK---DSAFIEDD 617 (861)
T ss_dssp HHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCG-GGTGGGHHHHHHHHHHHHHST---TGGGTHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCCC---CCCCHHHH
T ss_conf 99999999998875320138855677799999999999999999855-634789999999999997467---88757999
Q ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCEEEECCCHHHHHHHHH
Q ss_conf 99999999978037864322663599998615699832258897654346887531032138912453020599999999
Q 001487 613 MLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATAC 692 (1069)
Q Consensus 613 ~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~a~ 692 (1069)
++.+++.++...|..|.||++.+++.+++.+..+ + ...+..|+
T Consensus 618 ~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~-~------------------------------------~~vr~~a~ 660 (861)
T 2bpt_A 618 VFYAISALAASLGKGFEKYLETFSPYLLKALNQV-D------------------------------------SPVSITAV 660 (861)
T ss_dssp HHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCT-T------------------------------------SHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-C------------------------------------HHHHHHHH
T ss_conf 9999999999976609999999999999886556-6------------------------------------78999999
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 99999999930104131998899870013876-99679999998489999999999980899999979999999999999
Q 001487 693 NMLCCYADELKEGFFPWIDQVAPTLVPLLKFY-FHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPA 771 (1069)
Q Consensus 693 ~~l~~l~~~~~~~~~p~~~~~~~~l~~~l~~~-~~~~ir~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 771 (1069)
.+++.++..++..+.||++.+++.+...+.+. .+..+|..++.+++.++..... .+.++++.++|.
T Consensus 661 ~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~-------------~~~~~l~~~l~~ 727 (861)
T 2bpt_A 661 GFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGA-------------DFIPYLNDIMAL 727 (861)
T ss_dssp HHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGG-------------GGHHHHHHHHHH
T ss_pred HHHHHHHHHHCHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHH
T ss_conf 9999999874540311199999999997278655676659999999999998405-------------089999999999
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 99998009939899999999999999849999998899999999999998886699999972077888676457555336
Q 001487 772 LVEALHKEPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIKEENE 851 (1069)
Q Consensus 772 l~~~~~~~~~~~v~~~~l~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~~ 851 (1069)
+++.+...... + +.+ . .+
T Consensus 728 l~~~~~~~~~~-----------------~---d~d-----------------------------------~-------~~ 745 (861)
T 2bpt_A 728 CVAAQNTKPEN-----------------G---TLE-----------------------------------A-------LD 745 (861)
T ss_dssp HHHHHTCCCSS-----------------S---SHH-----------------------------------H-------HH
T ss_pred HHHHHHCCCCC-----------------C---CHH-----------------------------------H-------HH
T ss_conf 99997367899-----------------9---758-----------------------------------8-------99
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HCHHHHHHHHHHHHHHHHCCC--C-CHHHHHHHHHHHHHHHHHH-HHHHHHHHH-H
Q ss_conf 699999999999999999811---220564999886565320699--9-8888999999799997672-256664257-4
Q 001487 852 QEEEVFDQVGEILGTLIKTFK---AAFLPFFDELSSYLTPMWGKD--K-TAEERRIAICIFDDVAEQC-REAALKYYE-T 923 (1069)
Q Consensus 852 ~~~~l~~~~~~~l~~l~~~~~---~~~~~~~~~l~~~l~~~l~~~--~-~~~~r~~a~~~l~~l~~~~-~~~~~~~~~-~ 923 (1069)
....++..+.++++.++...+ ..+.+++..+++.+...+.+. . +...|..++.+++.++... |..+.+|++ .
T Consensus 746 ~~~~vr~~~l~~~~~i~~~l~~~~~~~~~~~~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~~~g~~~~~~~~~~ 825 (861)
T 2bpt_A 746 YQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDGSIKQFYGQD 825 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCHHHHGGGHHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHCTTSTTGGGTTCH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHCH
T ss_conf 99999999999999999998267788999999999999998748555786999999999999999882882488987267
Q ss_pred HHHHHHHHCC---CCCHHHHHHHHHHHHHHHH
Q ss_conf 8999996626---9994688866589979984
Q 001487 924 YLPFLLEACN---DENQDVRQAAVYGLGVCAE 952 (1069)
Q Consensus 924 i~~~ll~~l~---~~~~~vr~~a~~~lg~l~~ 952 (1069)
+++.+++.+. +.+..++.+|.|++|.+.+
T Consensus 826 ~~~~ll~~l~~~~~~~~~~~~~~~wa~~~~~~ 857 (861)
T 2bpt_A 826 WVIDYIKRTRSGQLFSQATKDTARWAREQQKR 857 (861)
T ss_dssp HHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf 99999998853557887789999999999998
No 4
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=1.00 E-value=1 Score=488.11 Aligned_cols=806 Identities=17% Similarity=0.240 Sum_probs=589.0
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHCCCCC-------CCCCC
Q ss_conf 8999999960899589899999998865019248999999998069-997799989999996404588-------87455
Q 001487 23 PFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRS-PHPEARAMAAVLLRKLLTRDD-------SFLWP 94 (1069)
Q Consensus 23 ~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~~p~~~~~~L~~il~~~-~~~~vR~~a~i~L~~~i~~~~-------~~~w~ 94 (1069)
++.++|..+++||++.|++|+++|+++.+++++.+...|++++.+. .++.+|++|+++||+.+...+ ...|.
T Consensus 2 ~l~~~L~~~~s~d~~~r~~A~~~L~~~~~~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w~ 81 (876)
T 1qgr_A 2 ELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWL 81 (876)
T ss_dssp CHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHC
T ss_conf 68999997629898999999999999871680469999999985789987999999999987605543476789986440
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHH
Q ss_conf 7898799999999989984151365999999999999842169999001599999960299--85678899999999455
Q 001487 95 RLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSD--SVKLQESAFLIFAQLSQ 172 (1069)
Q Consensus 95 ~l~~~~~~~i~~~ll~~l~~e~~~~ir~~~~~~i~~i~~~~~~~~~w~~ll~~l~~~l~~~--~~~~r~~al~~l~~l~~ 172 (1069)
.++++.+..+|..+++.+.++ +..+ +.++.+++.+++.+++.+.||++++.+.+.+.++ ++.+|..++.+++.+++
T Consensus 82 ~l~~~~~~~ik~~ll~~l~~~-~~~~-~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~ 159 (876)
T 1qgr_A 82 AIDANARREVKNYVLHTLGTE-TYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQ 159 (876)
T ss_dssp TSCHHHHHHHHHHHHHHTTTC-CSSS-CHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHCCC-CHHH-HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf 699999999999999986799-4788-99999999999846762256889999999870889879999999999999987
Q ss_pred HH-HHHCCHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 44-31100009999999998526999-94799999999999998307911286797569999999999983799678999
Q 001487 173 YI-GDTLTPHLKHLHAVFLNCLTNSN-NPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQE 250 (1069)
Q Consensus 173 ~~-~~~~~~~~~~l~~~l~~~l~~~~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~ 250 (1069)
.. ++.+..+.+.+++.+...+.++. +..+|..++++++.++.++........ ..+.+++.+...+.+.++++|..
T Consensus 160 ~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~---~~~~il~~l~~~~~~~~~~vr~~ 236 (876)
T 1qgr_A 160 DIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKES---ERHFIMQVVCEATQCPDTRVRVA 236 (876)
T ss_dssp HSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHH---HHHHHHHHHHHHTTCSSHHHHHH
T ss_pred HCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHCCCCCHHHHHH
T ss_conf 458766786799999999986167999889999999999999999999887178---99999999998717998899999
Q ss_pred HHHHHHHHHCCCCHHHHHHHH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHC-------------CC--HHHHC
Q ss_conf 999999987324088999599-999999997327874457889999999999983101-------------52--23202
Q 001487 251 ALELLIELAGTEPRFLRRQLV-DVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARER-------------AP--GMMRK 314 (1069)
Q Consensus 251 ~~~~l~~l~~~~~~~~~~~~~-~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~-------------~~--~~~~~ 314 (1069)
+++++..+++.+++.+.+++. .+++.++.... +.++.+|..++++|..+++.... .| .....
T Consensus 237 a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (876)
T 1qgr_A 237 ALQNLVKIMSLYYQYMETYMGPALFAITIEAMK--SDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFY 314 (876)
T ss_dssp HHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHT--CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHH
T ss_conf 999999999986999998877899999999963--873499999999999998878767665100112477754201899
Q ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHH
Q ss_conf 44559999999998424789972223679987554677602049899999998729964368799789884369996799
Q 001487 315 LPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKH 394 (1069)
Q Consensus 315 ~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r 394 (1069)
..+++..+++.++..+...++ +++++++..+..+..++..++..++ +.+++.+++.+.+.+++++|++|
T Consensus 315 ~~~~~~~ll~~ll~~l~~~~~----------d~~~~~~~~r~~a~~~l~~l~~~~~-~~~~~~~l~~l~~~l~~~~~~~r 383 (876)
T 1qgr_A 315 AKGALQYLVPILTQTLTKQDE----------NDDDDDWNPCKAAGVCLMLLATCCE-DDIVPHVLPFIKEHIKNPDWRYR 383 (876)
T ss_dssp HHHHHHHHHHHHHHHTTCCCS----------SCCTTCCCHHHHHHHHHHHHHHHHG-GGGHHHHHHHHHHHTTCSSHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCC----------CCCCCCCHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 999898870799987531334----------4454521799999999999998775-86699999999988469982899
Q ss_pred HHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCHHH-HHHHHHHHHHHHHHHCCCC
Q ss_conf 999999999994238-99997199999999851789886489999999998674214227-7522441589999612699
Q 001487 395 HAALIALAQIAEGCA-KVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDL-QNQFHPQVLPALAGAMDDF 472 (1069)
Q Consensus 395 ~aal~~l~~l~~~~~-~~~~~~~~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~-~~~~~~~il~~l~~~l~~~ 472 (1069)
++++.+++.+++++. +.+.++++.+++.++..+.|+++.||.+|+++++++++.+++.+ ..++++.+++.++..+.+
T Consensus 384 ~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~- 462 (876)
T 1qgr_A 384 DAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSA- 462 (876)
T ss_dssp HHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTS-
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHCC-
T ss_conf 9999999999748877789999999999999986799789999999999999985720114477799999999998758-
Q ss_pred CCHHHHHHHHHHHHHHHHCCC-------------CCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHHHHHH
Q ss_conf 994599999999999651189-------------4333575699999999984148---843999999999999995176
Q 001487 473 QNPRVQAHAASAVLNFSENCT-------------PEILTPYLDGIVSKLLVLLQNG---KQMVQEGALTALASVADSSQE 536 (1069)
Q Consensus 473 ~~~~v~~~a~~al~~l~~~~~-------------~~~~~~~l~~i~~~l~~~l~~~---~~~v~~~al~~l~~l~~~~~~ 536 (1069)
+ +.|+..+++++..+++.++ .+.+.||++.+++.+...+.+. +..+|..++.+++.++...+.
T Consensus 463 ~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~ 541 (876)
T 1qgr_A 463 E-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAK 541 (876)
T ss_dssp C-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCS
T ss_pred C-HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCH
T ss_conf 8-889999999999999985020123444455540321576999999999997276742046999999999999997743
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCC-----CHHH
Q ss_conf 55754855669999999600672100014699999999997527221266399999999998358899998-----0126
Q 001487 537 HFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDD-----PTTS 611 (1069)
Q Consensus 537 ~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~-----~~~~ 611 (1069)
.+.+|+..+++.+...+...... . ......++ .++.
T Consensus 542 ~~~~~~~~l~~~l~~~l~~~~~~--------------------~-------------------~~~~~~~d~~~~~~~~~ 582 (876)
T 1qgr_A 542 DCYPAVQKTTLVIMERLQQVLQM--------------------E-------------------SHIQSTSDRIQFNDLQS 582 (876)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTT--------------------T-------------------TSCCSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------------------H-------------------HCCCCHHHHHHHHHHHH
T ss_conf 11899999999999999999988--------------------7-------------------12488635999999999
Q ss_pred HHHHHHHHHHHHHC-CCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCEEEECCCHHHHHHH
Q ss_conf 99999999997803-78643226635999986156998322588976543468875310321389124530205999999
Q 001487 612 YMLQAWARLCKCLG-QDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKAT 690 (1069)
Q Consensus 612 ~~~~~~~~l~~~~~-~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~ 690 (1069)
.++.+++.++..+| ..+.||++.+++.+++.+....+ . ...++.
T Consensus 583 ~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~----------------~-------------------~~v~~~ 627 (876)
T 1qgr_A 583 LLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAG----------------S-------------------GGVQED 627 (876)
T ss_dssp HHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC---------------------C-------------------CHHHHH
T ss_pred HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCC----------------C-------------------CCCCHH
T ss_conf 99999999999828542057899999999999985368----------------8-------------------885089
Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 99999999999301041319988998700138769967999999848999999999998089999997999999999999
Q 001487 691 ACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIP 770 (1069)
Q Consensus 691 a~~~l~~l~~~~~~~~~p~~~~~~~~l~~~l~~~~~~~ir~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 770 (1069)
++.+++.++...+..|.||++.+++.+...+.+..++.+|..++.+++.++..... .+.++...+++
T Consensus 628 a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~-------------~~~~~~~~i~~ 694 (876)
T 1qgr_A 628 ALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQS-------------NIIPFCDEVMQ 694 (876)
T ss_dssp HHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGG-------------GGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHH
T ss_conf 99999999999876099999999999999875865087999999999999998878-------------54645999999
Q ss_pred HHHHHHCC-CCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 99999800-99398999999999999998499999988999999999999988866999999720778886764575553
Q 001487 771 ALVEALHK-EPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIKEE 849 (1069)
Q Consensus 771 ~l~~~~~~-~~~~~v~~~~l~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~ 849 (1069)
.++..+.. +.+.+++...+.++..+...+|.. +.++++.+++.+.+.... ..+..|++.
T Consensus 695 ~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~-----~~~~l~~~~~~l~~~~~~--------~~~~~d~~~------- 754 (876)
T 1qgr_A 695 LLLENLGNENVHRSVKPQILSVFGDIALAIGGE-----FKKYLEVVLNTLQQASQA--------QVDKSDYDM------- 754 (876)
T ss_dssp HHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGG-----GGGGHHHHHHHHHHHHTC--------CCCTTCHHH-------
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCHH-----HHHHHHHHHHHHHHHHHC--------CCCCCCHHH-------
T ss_conf 999974871233876399999999999970352-----799999999999999855--------589997588-------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------CHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHHHH-HH
Q ss_conf 366999999999999999998112----------205649998865653206999-888899999979999767225-66
Q 001487 850 NEQEEEVFDQVGEILGTLIKTFKA----------AFLPFFDELSSYLTPMWGKDK-TAEERRIAICIFDDVAEQCRE-AA 917 (1069)
Q Consensus 850 ~~~~~~l~~~~~~~l~~l~~~~~~----------~~~~~~~~l~~~l~~~l~~~~-~~~~r~~a~~~l~~l~~~~~~-~~ 917 (1069)
.+....++..+.++++.+++..+. .+.+|+..+++.+.....+.. +..+|..++.+++.++...|. .+
T Consensus 755 ~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~ 834 (876)
T 1qgr_A 755 VDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVL 834 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCHHH
T ss_conf 99999999999999999999974575555543889999999999999998658888889999999999999988284889
Q ss_pred HHH-HHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 642-5748999996-6269994688866589979984219
Q 001487 918 LKY-YETYLPFLLE-ACNDENQDVRQAAVYGLGVCAEFGG 955 (1069)
Q Consensus 918 ~~~-~~~i~~~ll~-~l~~~~~~vr~~a~~~lg~l~~~~~ 955 (1069)
.+| .+.+++.++. ++.++++.+|++|+|++|.+.+..+
T Consensus 835 ~~~~~~~~i~~ll~~~l~~~~~~~r~~a~~a~~~~~~~~~ 874 (876)
T 1qgr_A 835 KLVEARPMIHELLTEGRRSKTNKAKTLARWATKELRKLKN 874 (876)
T ss_dssp HHHHTSHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 9997048999999987546887689999999999997534
No 5
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=1.00 E-value=1 Score=407.73 Aligned_cols=686 Identities=12% Similarity=0.152 Sum_probs=490.3
Q ss_pred CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHCCCCCCCCCC----
Q ss_conf 917899999996089958989999999886501924899999999806-999779998999999640458887455----
Q 001487 20 DSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDDSFLWP---- 94 (1069)
Q Consensus 20 ~~~~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~~p~~~~~~L~~il~~-~~~~~vR~~a~i~L~~~i~~~~~~~w~---- 94 (1069)
|.+++.++|..+++||++.| ||++|+++++ +|++ ...|++++.+ +.+..+|++|+++|||.+.++ |.
T Consensus 3 d~~~l~~~L~~~~spd~~~r--Ae~~L~~~~~-~p~~-~~~L~~il~~~~~~~~vR~~A~i~lkn~i~~~----w~~~~~ 74 (960)
T 1wa5_C 3 DLETVAKFLAESVIASTAKT--SERNLRQLET-QDGF-GLTLLHVIASTNLPLSTRLAGALFFKNFIKRK----WVDENG 74 (960)
T ss_dssp HHHHHHHHHHHTTSGGGHHH--HHHHHHHHHT-STTH-HHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHH----SBCSSS
T ss_pred CHHHHHHHHHHHCCCCHHHH--HHHHHHHHHC-CCCH-HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC----CCCCCC
T ss_conf 59999999997659987899--9999998555-9988-99999998657988889999999999999854----887656
Q ss_pred --CCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf --789879999999998998415136599999999999984216999900159999996029985678899999999455
Q 001487 95 --RLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQ 172 (1069)
Q Consensus 95 --~l~~~~~~~i~~~ll~~l~~e~~~~ir~~~~~~i~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~ 172 (1069)
.++++.+..||+.+++.+.++ +..+|++++.+++.|+++++| +.||++++.+.+.+++++...+++++.++..+++
T Consensus 75 ~~~l~~~~k~~ik~~ll~~l~~~-~~~ir~~l~~~ia~ia~~d~p-~~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~ 152 (960)
T 1wa5_C 75 NHLLPANNVELIKKEIVPLMISL-PNNLQVQIGEAISSIADSDFP-DRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFK 152 (960)
T ss_dssp CBSSCHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHST-TTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHG
T ss_pred CCCCCHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 78899899999999999999808-799999999999999986171-3015799999998478988999999999999999
Q ss_pred HHHHH-------------CCHHHHHHHHHHH---HHHCCCCC--HHHH------HHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 44311-------------0000999999999---85269999--4799------99999999999830791128679756
Q 001487 173 YIGDT-------------LTPHLKHLHAVFL---NCLTNSNN--PDVK------IAALNAVINFIQCLTSSADRDRFQDL 228 (1069)
Q Consensus 173 ~~~~~-------------~~~~~~~l~~~l~---~~l~~~~~--~~vr------~~a~~~l~~l~~~~~~~~~~~~~~~~ 228 (1069)
..... +....+.+++.+. +.+.+... ..++ ..+++++..+....-.....+.+..+
T Consensus 153 ~~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~~~~ 232 (960)
T 1wa5_C 153 RWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVG 232 (960)
T ss_dssp GGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 98876148477899999999989999999999999987357987999999999999999999986256559999989999
Q ss_pred HHHHHHHHHHHHH--CCC---------HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHC---CCCCCHHHHHHH
Q ss_conf 9999999999983--799---------67899999999998732408899959999999999732---787445788999
Q 001487 229 LPLMMRTLTESLN--NGN---------EATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAE---AESLEEGTRHLA 294 (1069)
Q Consensus 229 ~~~~l~~l~~~l~--~~~---------~~~~~~~~~~l~~l~~~~~~~~~~~~~~i~~~l~~~~~---~~~~~~~vr~~a 294 (1069)
++.+++.+..... ..+ +.+++.+++++..+.+.+++.|.++++.+++.++..+. +...++.++..+
T Consensus 233 ~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a 312 (960)
T 1wa5_C 233 MGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKS 312 (960)
T ss_dssp HHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHH
T ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
T ss_conf 99999997689985557855331327999999999999999999899999999999999999998437776728999999
Q ss_pred HHHHHHHHHHHHCCCHHHHCC--HHHHHHHH-HHHHHHHCCCCCC-CCCCCCCCC-----CCCCCCCCCHHHHHHHHHHH
Q ss_conf 999999998310152232024--45599999-9999842478997-222367998-----75546776020498999999
Q 001487 295 IEFVITLAEARERAPGMMRKL--PQFINRLF-AILMSMLLDIEDD-PLWHSAETE-----DEDAGESSNYSVGQECLDRL 365 (1069)
Q Consensus 295 ~~~l~~l~~~~~~~~~~~~~~--~~~~~~l~-~~l~~~l~~~~~~-~~~~~~~~e-----~ed~~~~~~~~~a~~~l~~l 365 (1069)
+++|.++++.... ...+ .+++..++ +.+++.|...+++ +.|..+++| .++++.++.+.++..+++.+
T Consensus 313 l~fl~~~~~~~~~----~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l 388 (960)
T 1wa5_C 313 LSFLTAVTRIPKY----FEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKEL 388 (960)
T ss_dssp HHHHHHHHTSHHH----HGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHH
T ss_pred HHHHHHHHCCHHH----HHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHCCCCCCCCCCHHHHHHHHHHH
T ss_conf 9999999686768----998768518999999996873488887899884499999986357551237188999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHC---HHHHHH-----HHHHH-HHHHHHHCCCC
Q ss_conf 9872996436879978988436------999679999999999999423---899997-----19999-99998517898
Q 001487 366 AIALGGNTIVPVASEQLPAYLA------APEWQKHHAALIALAQIAEGC---AKVMVK-----NLEQV-LSMVLNSFRDP 430 (1069)
Q Consensus 366 ~~~~~~~~~~~~l~~~l~~~l~------~~~~~~r~aal~~l~~l~~~~---~~~~~~-----~~~~i-~~~l~~~l~d~ 430 (1069)
+..++ +.+++.+++++.+.++ +++|+.|++|+.++|.++++. ...... .+..+ ...+++.+.++
T Consensus 389 ~~~~~-~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~ 467 (960)
T 1wa5_C 389 KEKNE-VLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSN 467 (960)
T ss_dssp HHHCH-HHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCS
T ss_pred HHHCC-HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 99701-32789999999999987366961217999999999999998741256774123443569999999737874499
Q ss_pred ---CHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCC----------CCCCC
Q ss_conf ---86489999999998674214227752244158999961269999459999999999965118----------94333
Q 001487 431 ---HPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENC----------TPEIL 497 (1069)
Q Consensus 431 ---~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~----------~~~~~ 497 (1069)
+|.+|.+|+|+++++++++. ..++..+++.+++.+.+ +++.|+.+|+.++..+++.. ..+.+
T Consensus 468 ~~~~p~vr~~a~~~lg~~~~~~~----~~~l~~~l~~l~~~L~d-~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l 542 (960)
T 1wa5_C 468 NIPHIILRVDAIKYIYTFRNQLT----KAQLIELMPILATFLQT-DEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDI 542 (960)
T ss_dssp SCSCHHHHHHHHHHHHHTGGGSC----HHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGT
T ss_pred CCCCCEEHHHHHHHHHHHHHHCC----HHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHH
T ss_conf 88883303989999999886589----99999999999998489-97219999999999998443644466544359875
Q ss_pred CCCHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCCCHHHHHHHH
Q ss_conf 5756999999999841488-----4399999999999999517655754855669999999600-672100014699999
Q 001487 498 TPYLDGIVSKLLVLLQNGK-----QMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNA-TDKSNRMLRAKSMEC 571 (1069)
Q Consensus 498 ~~~l~~i~~~l~~~l~~~~-----~~v~~~al~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~-~~~~~~~lr~~a~~~ 571 (1069)
.||++.+++.|+.+++... ....+.++.+++.++...++.+.||++.+++.+...+... .+++...++..+++|
T Consensus 543 ~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~ 622 (960)
T 1wa5_C 543 SNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFES 622 (960)
T ss_dssp TTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 64699999999999971467877643227999999999998888612479999999999999997398972788999999
Q ss_pred HHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH--HHCCCCCCC
Q ss_conf 999997527221266399999999998358899998012699999999997803786432266359999--861569983
Q 001487 572 ISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLL--QSAQLKPDV 649 (1069)
Q Consensus 572 l~~l~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll--~~~~~~~~~ 649 (1069)
++.++++.+++.+.++.+.+++.+........ ....++++..++.+.... +.+.+|+..+++.++ ..++...
T Consensus 623 l~~l~~~~~~~~~~~~~~~~~p~~~~iL~~~~---~~~~~~~~~i~~~l~~~~-~~~~~~~~~~~~~l~~~~~~~~~~-- 696 (960)
T 1wa5_C 623 IGAILNYTQRQNLPLLVDSMMPTFLTVFSEDI---QEFIPYVFQIIAFVVEQS-ATIPESIKPLAQPLLAPNVWELKG-- 696 (960)
T ss_dssp HHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTC---TTTHHHHHHHHHHHHHHC-SSCCTTTGGGHHHHTSGGGGCCTT--
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHCCHHHHCCCC--
T ss_conf 99999638953699999999999999998605---766999999999999735-478899999999980999855778--
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHH
Q ss_conf 22588976543468875310321389124530205999999999999999993010413199889987001387699679
Q 001487 650 TITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEV 729 (1069)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~a~~~l~~l~~~~~~~~~p~~~~~~~~l~~~l~~~~~~~i 729 (1069)
.+ ...+.+|..++...+..+.+ ++.++..+.+.+.+. . .
T Consensus 697 ----------------------------------~~---~~~~~~L~~~~~~~~~~~~~-~~~~l~~~~~~~~~~-~--~ 735 (960)
T 1wa5_C 697 ----------------------------------NI---PAVTRLLKSFIKTDSSIFPD-LVPVLGIFQRLIASK-A--Y 735 (960)
T ss_dssp ----------------------------------TH---HHHHHHHHHHHHHHGGGCSC-SHHHHHHHHHHHTCT-T--T
T ss_pred ----------------------------------CC---HHHHHHHHHHHHHCHHHHHH-HHHHHHHHHHHHCCC-C--C
T ss_conf ----------------------------------73---55899999999768499999-999999999996799-4--2
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHH
Q ss_conf 9999984899999999999808999999799999999999999999800993989
Q 001487 730 RKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEI 784 (1069)
Q Consensus 730 r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~v 784 (1069)
+..++..++.++..+. ...+.+++..+++.++..+........
T Consensus 736 ~~~a~~ll~~i~~~~~------------~~~~~~yl~~i~~~l~~~l~~~~~~~~ 778 (960)
T 1wa5_C 736 EVHGFDLLEHIMLLID------------MNRLRPYIKQIAVLLLQRLQNSKTERY 778 (960)
T ss_dssp HHHHHHHHHHHHHHSC------------HHHHGGGHHHHHHHHHHGGGSSCCHHH
T ss_pred CCHHHHHHHHHHHHCC------------HHHHHHHHHHHHHHHHHHHHHCCCHHH
T ss_conf 0359999999999798------------777898899999999999831774749
No 6
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=1.00 E-value=1 Score=388.36 Aligned_cols=518 Identities=14% Similarity=0.188 Sum_probs=393.3
Q ss_pred CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCH
Q ss_conf 99178999999960899589899999998865019248999999998069997799989999996404588874557898
Q 001487 19 PDSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSL 98 (1069)
Q Consensus 19 ~~~~~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~~p~~~~~~L~~il~~~~~~~vR~~a~i~L~~~i~~~~~~~w~~l~~ 98 (1069)
+|.+++.+++..+++||++.|++|+++|+++++ +|+++ .++.+++..+.++.+|++|+++|++.++++ |..+++
T Consensus 4 ~d~~~l~~~l~~~~~~d~~~r~~A~~~L~~~~~-~p~~w-~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~----w~~l~~ 77 (971)
T 2x1g_F 4 IDIARLEEAVVSFYRSNSQNQAITHEWLTDAEA-SPQAW-QFSWQLMQLGKSQEVQFFGAITLHSKLMKH----WHEVPP 77 (971)
T ss_dssp -------CTHHHHHTSTTTC----CHHHHHTTT-STHHH-HHHHHHTCTTSCHHHHHHHHHHHHHHHHHC----GGGCCG
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC-CHHHH-HHHHHHHHCCCCHHHHHHHHHHHHHHHHCC----HHHCCH
T ss_conf 559999999998769999999999999999874-97989-999999835994989999999999999715----864999
Q ss_pred HHHHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCC------CHHHHHHHHHHHHHH
Q ss_conf 799999999989984151--365999999999999842169999001599999960299------856788999999994
Q 001487 99 HTQSSLKSMLLQSIQLES--AKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSD------SVKLQESAFLIFAQL 170 (1069)
Q Consensus 99 ~~~~~i~~~ll~~l~~e~--~~~ir~~~~~~i~~i~~~~~~~~~w~~ll~~l~~~l~~~------~~~~r~~al~~l~~l 170 (1069)
+.+..+|+.+++.+.... ++.+|++++.+++.|++.++| .||++++.+.+.++++ ++..++.++.+|..+
T Consensus 78 ~~~~~ir~~ll~~l~~~~~~~~~vr~kl~~~la~i~~~~~p--~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l 155 (971)
T 2x1g_F 78 ENREELKQKILESIVRFAGGPKIVLNRLCISLGAYIVHMLG--EWPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAI 155 (971)
T ss_dssp GGHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTC--C------HHHHHHHHTC----CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 99999999999999986799878999999999999997062--2437999999997153345678788999999999985
Q ss_pred HHHHH------------HHCCHHHHHHHHHHHHHHCCCCCH-------HHHHHHHHHHHHHHH--HHCCC----------
Q ss_conf 55443------------110000999999999852699994-------799999999999998--30791----------
Q 001487 171 SQYIG------------DTLTPHLKHLHAVFLNCLTNSNNP-------DVKIAALNAVINFIQ--CLTSS---------- 219 (1069)
Q Consensus 171 ~~~~~------------~~~~~~~~~l~~~l~~~l~~~~~~-------~vr~~a~~~l~~l~~--~~~~~---------- 219 (1069)
+++.. +.+....+.+++.+...+.+..+. .++..+++|+..++. +.+..
T Consensus 156 ~EEi~~~~~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~~~~~ll~~l~ 235 (971)
T 2x1g_F 156 PEEAQVIHTSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIEGCVTITAVLL 235 (971)
T ss_dssp HHHHHHCCCSSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHH
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH
T ss_conf 99882468578999999999987999999999998554678888642367999999999998257838656631999998
Q ss_pred --------------------C-----------------------HHHHHHHHHHHHHHHHHHH---HHCCCH---HHHHH
Q ss_conf --------------------1-----------------------2867975699999999999---837996---78999
Q 001487 220 --------------------A-----------------------DRDRFQDLLPLMMRTLTES---LNNGNE---ATAQE 250 (1069)
Q Consensus 220 --------------------~-----------------------~~~~~~~~~~~~l~~l~~~---l~~~~~---~~~~~ 250 (1069)
. ....+..++|.++...... ..+.+. +....
T Consensus 236 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 315 (971)
T 2x1g_F 236 EVVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYPKTAFVLIKMFLDSLSEITKTEWKRENDNEDIIVH 315 (971)
T ss_dssp HHHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHHHHHHHHHHHHHHHHHHHHHHSSSSCSCSHHHHH
T ss_pred HHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
T ss_conf 64355302323566555676774799999999999976801132088999999999986899999985656540689999
Q ss_pred HHHHHHHHHCCCCHHHH-----------HHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHHHHHHH-H-----CCCH
Q ss_conf 99999998732408899-----------95999999999973278---744578899999999999831-0-----1522
Q 001487 251 ALELLIELAGTEPRFLR-----------RQLVDVVGSMLQIAEAE---SLEEGTRHLAIEFVITLAEAR-E-----RAPG 310 (1069)
Q Consensus 251 ~~~~l~~l~~~~~~~~~-----------~~~~~i~~~l~~~~~~~---~~~~~vr~~a~~~l~~l~~~~-~-----~~~~ 310 (1069)
.++.+..+++.+...+. +++..+++.++.+...+ ..+++++..++++|..+++.. . +.+.
T Consensus 316 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~ 395 (971)
T 2x1g_F 316 IYMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHK 395 (971)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
T ss_conf 99999999999999999873157653549999999999999758888886312458789999999999974133100089
Q ss_pred HHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCC--
Q ss_conf 320244559999999998424789972223679987554677602049899999998729964368799789884369--
Q 001487 311 MMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAA-- 388 (1069)
Q Consensus 311 ~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~-- 388 (1069)
......+++..+++.++..+.+++++ +|...+ .+|+++..+.++.+..++..++..++ +.+++.+++.+.+.+.+
T Consensus 396 ~~~~~~~~~~~ll~~l~~~~~~p~~~-~~~~~d-~~e~~~f~~~R~~~~~~l~~~~~~~~-~~~l~~~~~~l~~~l~~~~ 472 (971)
T 2x1g_F 396 CWEYIKPLYAHLTRILVRKSEQPDEK-SLAKWS-SDDLECFRCYRQDISDTFMYCYDVLN-DYILEILAAMLDEAIADLQ 472 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCCCTT-TTSCSC-HHHHHHHHHHHHHHHHHHHHHHTTCT-THHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCC-CCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCC
T ss_conf 99999999999999999986199962-433567-75799999999999999999999970-9999999999999997346
Q ss_pred ---CCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
Q ss_conf ---9967999999999999942389999719999999985178--98864899999999986742142277522441589
Q 001487 389 ---PEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFR--DPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLP 463 (1069)
Q Consensus 389 ---~~~~~r~aal~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~--d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~ 463 (1069)
++|+.|++++.+++.+++++.....++++.+++.+ ..+. |+++.||..++++++++++++.... .+++.+++
T Consensus 473 ~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~~l-~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~--~~l~~vl~ 549 (971)
T 2x1g_F 473 RHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVL-AEIPYEKLNVKLLGTALETMGSYCNWLMENP--AYIPPAIN 549 (971)
T ss_dssp HCTTCCHHHHHHHHHHHHTTTC------CHHHHHHHHH-HHSCTTTSCHHHHHHHHHHHHHTHHHHC------CHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH-HHCCCCCCCHHHHHHHHHHHHHHHHHHHCCH--HHHHHHHH
T ss_conf 89873899999999999998354803347799999999-8567653678999999999998788886088--98999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHHH-HHHHH
Q ss_conf 999612699994599999999999651189433357569999999998414--884399999999999999517-65575
Q 001487 464 ALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQN--GKQMVQEGALTALASVADSSQ-EHFQK 540 (1069)
Q Consensus 464 ~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~i~~~l~~~l~~--~~~~v~~~al~~l~~l~~~~~-~~~~~ 540 (1069)
.++..+ + +.|+..|+.++..+++.++.. +.||++.+++.+...++. .+...+..++++++.++...+ +...+
T Consensus 550 ~l~~~l-~---~~v~~~A~~al~~l~~~~~~~-l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~ 624 (971)
T 2x1g_F 550 LLVRGL-N---SSMSAQATLGLKELCRDCQLQ-LKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPK 624 (971)
T ss_dssp HHHHHH-H---SSCHHHHHHHHHHHHHHCHHH-HHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHH
T ss_pred HHHHHH-C---HHHHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_conf 999874-8---588999999999999998886-23007999999999972789992899999999999997299999999
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 485566999999960
Q 001487 541 YYDAVMPFLKAILVN 555 (1069)
Q Consensus 541 ~~~~i~~~l~~~l~~ 555 (1069)
|+..+++.+...+..
T Consensus 625 ~~~~ll~~l~~~l~~ 639 (971)
T 2x1g_F 625 YLDIIVSPCFEELQA 639 (971)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 999999899999999
No 7
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=1.00 E-value=1 Score=385.08 Aligned_cols=544 Identities=17% Similarity=0.222 Sum_probs=406.9
Q ss_pred CCHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 991789999999-6089958989999999886501924899999999806999779998999999640458887455789
Q 001487 19 PDSAPFETLISH-LMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLS 97 (1069)
Q Consensus 19 ~~~~~l~~ll~~-~~s~d~~~r~~A~~~L~~~~~~~p~~~~~~L~~il~~~~~~~vR~~a~i~L~~~i~~~~~~~w~~l~ 97 (1069)
++.+++.+++.. ..++|++.|++|+++|+++++ +|+++ ..+.+++.++.++.+|++|+++||+.++++ |..++
T Consensus 21 ~~~~~l~~~l~~l~~~~~~~~r~~A~~~L~~~~~-~p~~~-~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~----w~~l~ 94 (963)
T 2x19_B 21 FTVENVEKALHQLYYDPNIENKNLAQKWLMQAQV-SPQAW-HFSWQLLQPDKVPEIQYFGASALHIKISRY----WSDIP 94 (963)
T ss_dssp CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH-STTHH-HHHHHHTSTTSCHHHHHHHHHHHHHHHHHC----GGGSC
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC-CHHHH-HHHHHHHCCCCCHHHHHHHHHHHHHHHHHC----HHHCC
T ss_conf 5599999999998359798999999999999846-99999-999998657972588999999999999738----87499
Q ss_pred HHHHHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHH
Q ss_conf 8799999999989984151--36599999999999984216999900159999996029-----9856788999999994
Q 001487 98 LHTQSSLKSMLLQSIQLES--AKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSS-----DSVKLQESAFLIFAQL 170 (1069)
Q Consensus 98 ~~~~~~i~~~ll~~l~~e~--~~~ir~~~~~~i~~i~~~~~~~~~w~~ll~~l~~~l~~-----~~~~~r~~al~~l~~l 170 (1069)
++.+..+|+.+++.+...+ ++.+|++++.+++.|++.++| ..||++++.+.+.+++ ++...++.++.+|..+
T Consensus 95 ~~~~~~ir~~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~p-~~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l 173 (963)
T 2x19_B 95 TDQYESLKAQLFTQITRFASGSKIVLTRLCVALASLALSMMP-DAWPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVL 173 (963)
T ss_dssp GGGHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTT-TTSTTHHHHHHHHHCC------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHC
T ss_conf 999999999999999987489889999999999999987483-1155599999999864335787478899999999868
Q ss_pred HHHHH-------------HHCCHHHHHHHHHHHHHHCCCCCH-HHHHHHHHHHHHHHH----------------------
Q ss_conf 55443-------------110000999999999852699994-799999999999998----------------------
Q 001487 171 SQYIG-------------DTLTPHLKHLHAVFLNCLTNSNNP-DVKIAALNAVINFIQ---------------------- 214 (1069)
Q Consensus 171 ~~~~~-------------~~~~~~~~~l~~~l~~~l~~~~~~-~vr~~a~~~l~~l~~---------------------- 214 (1069)
++... +.+....+.+++.+...+.+..+. .++..+++|+..++.
T Consensus 174 ~ee~~~~~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~~~~~~~~~~~ll~~l~~~l~~~ 253 (963)
T 2x19_B 174 PEEFQTSRLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQLEVPLQDCEALIQAAFAALQDS 253 (963)
T ss_dssp HHHHTTCCC---------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHTSSCCGGGTHHHHHHHHHHTTST
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCC
T ss_conf 99885065869999999999998788999999999827788057999999999999828998534168999999986796
Q ss_pred ---------------HHCCCCHHHHHHHHHHHHHHH---HHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHH------HHH
Q ss_conf ---------------307911286797569999999---99998379967899999999998732408899------959
Q 001487 215 ---------------CLTSSADRDRFQDLLPLMMRT---LTESLNNGNEATAQEALELLIELAGTEPRFLR------RQL 270 (1069)
Q Consensus 215 ---------------~~~~~~~~~~~~~~~~~~l~~---l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~------~~~ 270 (1069)
..........+..+++.++.. +.......+.+.....++++..+++.++..+. +++
T Consensus 254 ~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~ 333 (963)
T 2x19_B 254 ELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQVEHWQSF 333 (963)
T ss_dssp TTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 47999999999997531124577999999999974079999999877989999999999999998699997375565899
Q ss_pred HHHHHHHHHHHCCC---CCCHHHHHHHHHHHHHHHHHHHCC-----CHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 99999999973278---744578899999999999831015-----2232024455999999999842478997222367
Q 001487 271 VDVVGSMLQIAEAE---SLEEGTRHLAIEFVITLAEARERA-----PGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSA 342 (1069)
Q Consensus 271 ~~i~~~l~~~~~~~---~~~~~vr~~a~~~l~~l~~~~~~~-----~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~ 342 (1069)
..+++.++.+...+ ..+++++..++++|..+++..... +.......+++.++++.++..+.+++++ +|...
T Consensus 334 ~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~-~~~~~ 412 (963)
T 2x19_B 334 LALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDE-EYGFW 412 (963)
T ss_dssp HHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHH-HHHTS
T ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-CCCCC
T ss_conf 99999999997588888720345441299999999999862344457889999999999999999998099830-22677
Q ss_pred CCCCCCCCCC-CCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHHHHHCHHHHHHHHH
Q ss_conf 9987554677-6020498999999987299643687997898843----6999679999999999999423899997199
Q 001487 343 ETEDEDAGES-SNYSVGQECLDRLAIALGGNTIVPVASEQLPAYL----AAPEWQKHHAALIALAQIAEGCAKVMVKNLE 417 (1069)
Q Consensus 343 ~~e~ed~~~~-~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l----~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~ 417 (1069)
++ +|++++ ..++.+.+++..++...+ +.+++.+++.+.+.+ .+.+|+.|++++.+++.+++++.....++++
T Consensus 413 ~~--de~~~~~~~r~~~~~~L~~~~~~~~-~~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~ 489 (963)
T 2x19_B 413 SS--DEKEQFRIYRVDISDTLMYVYEMLG-AELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVP 489 (963)
T ss_dssp CH--HHHHHHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHH
T ss_pred CH--HHHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 76--3899999999999999999999706-89999999999999972579986679989999999997043822467899
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 99999985178988648999999999867421422775224415899996126999945999999999996511894333
Q 001487 418 QVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEIL 497 (1069)
Q Consensus 418 ~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~ 497 (1069)
.+++.+. .+.++++.||..++++++++++++.... .+++.+++.++..+.+ +.|+..|+.++..+++.++. .+
T Consensus 490 ~l~~~l~-~l~~~~~~vr~~~~~~l~~~~~~l~~~~--~~l~~vl~~l~~~l~~---~~V~~~A~~al~~l~~~~~~-~l 562 (963)
T 2x19_B 490 GLIGLIP-RISISNVQLADTVMFTIGALSEWLADHP--VMINSVLPLVLHALGN---PELSVSSVSTLKKICRECKY-DL 562 (963)
T ss_dssp HHHHHGG-GSCCCSHHHHHHHHHHHHHTHHHHHHCH--HHHTTTHHHHHHHTTC---GGGHHHHHHHHHHHHHHTGG-GC
T ss_pred HHHHHHH-HCCCCCHHHHHHHHHHHHHHHHHHHHCH--HHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHHHHH-HH
T ss_conf 9999998-5799858999999999998888887588--9899999999987178---46899999999999999899-87
Q ss_pred CCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHC----CCCCCCCHHHHHHH
Q ss_conf 57569999999998414--884399999999999999517-655754855669999999600----67210001469999
Q 001487 498 TPYLDGIVSKLLVLLQN--GKQMVQEGALTALASVADSSQ-EHFQKYYDAVMPFLKAILVNA----TDKSNRMLRAKSME 570 (1069)
Q Consensus 498 ~~~l~~i~~~l~~~l~~--~~~~v~~~al~~l~~l~~~~~-~~~~~~~~~i~~~l~~~l~~~----~~~~~~~lr~~a~~ 570 (1069)
.||++.+++.+...++. .+...+..++.+++.++...+ +.+.+|+..+++.+...+... .+++....+...++
T Consensus 563 ~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~ 642 (963)
T 2x19_B 563 PPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILG 642 (963)
T ss_dssp TTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 76699999999998635789848899999999999962999999999999998999999999827898778999999999
Q ss_pred HHHHHHHHHC
Q ss_conf 9999997527
Q 001487 571 CISLVGMAVG 580 (1069)
Q Consensus 571 ~l~~l~~~~~ 580 (1069)
|++.++++++
T Consensus 643 ~l~~i~~~~~ 652 (963)
T 2x19_B 643 LLSNLFTTLD 652 (963)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHHHCC
T ss_conf 9999997748
No 8
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=1.00 E-value=1 Score=370.12 Aligned_cols=925 Identities=12% Similarity=0.146 Sum_probs=596.9
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999998069997799989999996404588874557898799999999989984151365999999999999842169
Q 001487 58 TLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILP 137 (1069)
Q Consensus 58 ~~~L~~il~~~~~~~vR~~a~i~L~~~i~~~~~~~w~~l~~~~~~~i~~~ll~~l~~e~~~~ir~~~~~~i~~i~~~~~~ 137 (1069)
+..+++-+. +.++.+|..|..-|.+.+... ...+++.....+...+++.+.+ +++.+|..++.+++.++... +
T Consensus 8 l~~lL~~l~-s~d~~~R~~A~~~L~~~l~~~----~~~~~~~~~~~il~~Ll~~L~d-~~~~vR~~A~~~L~~l~~~~-~ 80 (1230)
T 1u6g_C 8 ISNLLEKMT-SSDKDFRFMATNDLMTELQKD----SIKLDDDSERKVVKMILKLLED-KNGEVQNLAVKCLGPLVSKV-K 80 (1230)
T ss_dssp HHHHHHHTT-CSSHHHHHHHHHHHHHHTSSS----CCSCCTTHHHHHHHHHHHHTTC-SSHHHHHHHHHHHHHHHTTS-C
T ss_pred HHHHHHHCC-CCCHHHHHHHHHHHHHHHCCC----CCCCCHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHC-C
T ss_conf 999997558-987859999999999997416----6578756799999999998669-99899999999999999758-7
Q ss_pred CCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH------CCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 9990015999999602998567889999999945544311------0000999999999852699994799999999999
Q 001487 138 ENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDT------LTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVIN 211 (1069)
Q Consensus 138 ~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~------~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~ 211 (1069)
...++.+++.+...+.+++..+|..+..+++.++...+.. ...+.+.+++.+...+.+..+..+|..++.++..
T Consensus 81 ~~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~ 160 (1230)
T 1u6g_C 81 EYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMAD 160 (1230)
T ss_dssp HHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 98999999999998669838899999999999999679744444117889999999999987578846799999999999
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 99830791128679756999999999998379967899999999998732408899959999999999732787445788
Q 001487 212 FIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTR 291 (1069)
Q Consensus 212 l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr 291 (1069)
++...+.. +...++.+++.+...+.++++.+|..++.+++.++...+..+ +..+++.++..+.... +...|
T Consensus 161 ~~~~~~~~-----l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~---~~~~l~~l~~~L~~~~-~~~~r 231 (1230)
T 1u6g_C 161 MLSRQGGL-----LVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIV---FVDLIEHLLSELSKND-SMSTT 231 (1230)
T ss_dssp HHHHTCSS-----CTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------CTTHHHHHHHHHHHTC-SSCSC
T ss_pred HHHHHHHH-----HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHH---HHHHHHHHHHHHCCCC-CHHHH
T ss_conf 99982767-----788799999999998759968999999999999998568999---9999999999861677-55689
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 99999999999831015223202445599999999984247899722236799875546776020498999999987299
Q 001487 292 HLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGG 371 (1069)
Q Consensus 292 ~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~ 371 (1069)
..++++|..+++. .+. .+.+++..+++.++..+.+. +...+..+..++..++..++
T Consensus 232 ~~a~~~l~~l~~~---~~~---~~~~~l~~l~~~ll~~l~d~-----------------~~~vR~~a~~~l~~l~~~~~- 287 (1230)
T 1u6g_C 232 RTYIQCIAAISRQ---AGH---RIGEYLEKIIPLVVKFCNVD-----------------DDELREYCIQAFESFVRRCP- 287 (1230)
T ss_dssp TTHHHHHHHHHHH---SSG---GGTTSCTTHHHHHHHHHSSC-----------------CTTTHHHHHHHHHHHHHCTT-
T ss_pred HHHHHHHHHHHHH---HHH---HHHHHHHHHHHHHHHHHCCC-----------------CHHHHHHHHHHHHHHHHHCH-
T ss_conf 9999999999998---689---89988999999999986689-----------------77899999999999999784-
Q ss_pred CC---CHHHHHHHHHHHHC-------------------------------------CCCHHHHHHHHHHHHHHHHHCHHH
Q ss_conf 64---36879978988436-------------------------------------999679999999999999423899
Q 001487 372 NT---IVPVASEQLPAYLA-------------------------------------APEWQKHHAALIALAQIAEGCAKV 411 (1069)
Q Consensus 372 ~~---~~~~l~~~l~~~l~-------------------------------------~~~~~~r~aal~~l~~l~~~~~~~ 411 (1069)
+. .++.+++.+...+. +..|++|.+++.+++.++...++.
T Consensus 288 ~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~ 367 (1230)
T 1u6g_C 288 KEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEM 367 (1230)
T ss_dssp CCCHHHHHHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCHHH
T ss_conf 87777689999999998278998887644110112233446530110013666455567799999999999999746667
Q ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCH------------------HHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 9971999999998517898864899999999986742142------------------2775224415899996126999
Q 001487 412 MVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGP------------------DLQNQFHPQVLPALAGAMDDFQ 473 (1069)
Q Consensus 412 ~~~~~~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~------------------~~~~~~~~~il~~l~~~l~~~~ 473 (1069)
+.++++.+++.+...+.|+++.||.+++.+++.++...+. .....+++.+++.+.+.+.+ +
T Consensus 368 ~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~-~ 446 (1230)
T 1u6g_C 368 LPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKE-K 446 (1230)
T ss_dssp HHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTC-S
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC-C
T ss_conf 999999998999987179865799999999999999724243434675201356455999998746999999998613-7
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q ss_conf 94599999999999651189433357569999999998414884--39999999999999951765-5754855669999
Q 001487 474 NPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQ--MVQEGALTALASVADSSQEH-FQKYYDAVMPFLK 550 (1069)
Q Consensus 474 ~~~v~~~a~~al~~l~~~~~~~~~~~~l~~i~~~l~~~l~~~~~--~v~~~al~~l~~l~~~~~~~-~~~~~~~i~~~l~ 550 (1069)
++.+|..++.+++.++..++ ..+.+|++.+++.+...+.+... .++..++..++.++...+.. +.||++.++|.+.
T Consensus 447 ~~~vr~~~~~~L~~l~~~~~-~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~ 525 (1230)
T 1u6g_C 447 SVKTRQCCFNMLTELVNVLP-GALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVV 525 (1230)
T ss_dssp CHHHHHHHHHHHHHHHHHST-TTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf 78799999999999999761-10577799999999999748788516899999999999983898878867999999999
Q ss_pred HHHHHCCCCCCCCHHHHHHHHHHHHHHHHCH------HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 9996006721000146999999999975272------2126639999999999835889999801269999999999780
Q 001487 551 AILVNATDKSNRMLRAKSMECISLVGMAVGK------DKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCL 624 (1069)
Q Consensus 551 ~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~------~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~ 624 (1069)
..+.+ ....++..++.+++.++..+|+ ..+.||.+.+++.++..... .+.+..+|..++.+++.++...
T Consensus 526 ~~l~d----~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~-~d~~~~vr~~a~~~lg~L~~~~ 600 (1230)
T 1u6g_C 526 ACVGD----PFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKA-ADIDQEVKERAISCMGQIICNL 600 (1230)
T ss_dssp HHHTC----SSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSC-SSSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHCC----CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHH
T ss_conf 99714----246899999999999998716755565323278999999999998732-6998899999999999999982
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCCCC--------CCCCCCCCCCCCCCCCCCC-CHHHCCCCEEEECCCHHHHHHHHHHHH
Q ss_conf 3786432266359999861569983--------2258897654346887531-032138912453020599999999999
Q 001487 625 GQDFLPYMSVVMPPLLQSAQLKPDV--------TITSADSDNEIEDSDDDSM-ETITLGDKRIGIKTSVLEEKATACNML 695 (1069)
Q Consensus 625 ~~~~~~~l~~i~~~ll~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~k~~a~~~l 695 (1069)
|+.+.++++.+++.+...+..+... .+.... .. .+-+.+ ..+. .......+......|..++.++
T Consensus 601 g~~~~~~~~~~l~~L~~~l~~e~~r~~~~~al~~i~~~~----~~-~~~~~~~~~i~-~~L~~~l~~~~~~~r~~a~~al 674 (1230)
T 1u6g_C 601 GDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSP----LK-IDLRPVLGEGV-PILASFLRKNQRALKLGTLSAL 674 (1230)
T ss_dssp GGGCCTHHHHHHHHHHHHTTSSSHHHHHHHHHHHHTTCS----SC-CCCHHHHHHHH-HHHHHHTTSCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCC----CC-CCHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHH
T ss_conf 703244388999999988445305999999999998185----64-43688899999-9999999867888999999999
Q ss_pred HHHHHHHHHCCC-CCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH------------HCCCCCCCCHHHHH
Q ss_conf 999999301041-31998899870013876996799999984899999999999------------80899999979999
Q 001487 696 CCYADELKEGFF-PWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAI------------EKGLAPGRNESYVK 762 (1069)
Q Consensus 696 ~~l~~~~~~~~~-p~~~~~~~~l~~~l~~~~~~~ir~~a~~~l~~l~~~~~~~~------------~~~~~~~~~~~~~~ 762 (1069)
+.++...+..+. +++..++..+.+++++. +..++..+..++..++....... ..-...........
T Consensus 675 ~~l~~~~~~~~~~~~v~~~l~~ll~ll~~~-D~~~~~~~~~~L~~l~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 753 (1230)
T 1u6g_C 675 DILIKNYSDSLTAAMIDAVLDELPPLISES-DMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALS 753 (1230)
T ss_dssp HHHHHHCCTTCCHHHHHHHHTTCGGGSCTT-CHHHHHHHHHHHHHHTTSCGGGGGGTTTTTHHHHHHHHTCTTCCHHHHH
T ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
T ss_conf 999960433389899999999987635754-1878999999999998849126777677689999999758621057899
Q ss_pred H---HHHHH---------HHHHHHHHCCC--------CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH-
Q ss_conf 9---99999---------99999998009--------939899999999999999849999998899999999999998-
Q 001487 763 Q---LSDFI---------IPALVEALHKE--------PDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITA- 821 (1069)
Q Consensus 763 ~---~~~~i---------~~~l~~~~~~~--------~~~~v~~~~l~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~- 821 (1069)
. ++..+ ++.++..+... ...+....+-.+++.++...|+... .. ++.+...+..
T Consensus 754 ~l~~~~~~l~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~~~~~~~-~~----~~~~~~~~~~~ 828 (1230)
T 1u6g_C 754 AMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGP-AV----VGQFIQDVKNS 828 (1230)
T ss_dssp HHHHHHHHHHTTCCTTCSHHHHHHHHSTTTTTC----CCHHHHHHHHHHHHHHHHHSCCCSH-HH----HTTTTTTTTTT
T ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHH-HH----HHHHHHHHCCC
T ss_conf 99999999983478878899999998500357887320001048999999999984656668-99----99999983788
Q ss_pred --HHHHH-HH--HHHHHC-CCCCC--HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCC
Q ss_conf --88669-99--999720-77888--67-645755533669999999999999999981122056499988656532069
Q 001487 822 --SSSRK-RE--RAERAK-AEDFD--AE-ESELIKEENEQEEEVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGK 892 (1069)
Q Consensus 822 --~~~~~-~~--~~~~~~-~e~~d--~~-~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~ 892 (1069)
....+ -. +..+.+ ..+.. ++ ...+..--.+..+.++..++.++|.++.... ..++|.++..+..
T Consensus 829 ~~~~~~~~~~l~~l~~~g~~~~~~~~~~l~~~~~~~l~~~~~~Vr~aAa~aLg~l~~~~~-------~~~lp~ll~~l~~ 901 (1230)
T 1u6g_C 829 RSTDSIRLLALLSLGEVGHHIDLSGQLELKSVILEAFSSPSEEVKSAASYALGSISVGNL-------PEYLPFVLQEITS 901 (1230)
T ss_dssp TCCHHHHHHHHHHHHHHHHHSCCCSCTHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHTH-------HHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHC
T ss_conf 766799999999999861567876564189999998479977899999999687752699-------9889999998726
Q ss_pred CCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHH---------
Q ss_conf 9988889999997999976722-566642574899999662699946888665899799842198706889---------
Q 001487 893 DKTAEERRIAICIFDDVAEQCR-EAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKPLV--------- 962 (1069)
Q Consensus 893 ~~~~~~r~~a~~~l~~l~~~~~-~~~~~~~~~i~~~ll~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~--------- 962 (1069)
. +..|...+..+++++...+ ....++.+.+++.++..+.+.+..+|..++.|+|.++...+..+.|.+
T Consensus 902 ~--~~~~~~~l~al~e~i~~~~~~~~~~~~~~i~~~L~~~~~~~~~~~r~~~a~~lg~l~~~~~~~l~p~l~~~l~~~~~ 979 (1230)
T 1u6g_C 902 Q--PKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDPETLLPRLKGYLISGSS 979 (1230)
T ss_dssp C--GGGHHHHHHHHHHHHHSSCSTTTHHHHHHHHHHHTTCCCCSSTTHHHHHHHHHHHHHHSSGGGTHHHHTTTSSSSCH
T ss_pred C--CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCH
T ss_conf 6--03249889999999823876667766999999999873383044689999887566506768888999998569978
Q ss_pred -------------------------HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC--CHHHHHHHHH
Q ss_conf -------------------------9999999986159987880335568789999999986538999--9764999998
Q 001487 963 -------------------------GEALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQFHRDSI--DAAQVVPAWL 1015 (1069)
Q Consensus 963 -------------------------~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~--~~~~~~~~~l 1015 (1069)
+.+++.+...+.. .+..+|.+++.+++.+++..|+.+ +++.++|.++
T Consensus 980 ~~R~~~~~~l~~~~~~~~~~~~~~l~~~~~~ll~~l~d------~~~~vr~~a~~~l~~~~~~~~~~~~~~l~~~lp~l~ 1053 (1230)
T 1u6g_C 980 YARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLED------PDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHLY 1053 (1230)
T ss_dssp HHHHHHHHHTGGGCCSSCCTHHHHHHHHSTTTHHHHSS------SSTHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCC------CCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf 89999999999997068233589899989999986489------858799999999999984285768977988989999
Q ss_pred HHCCCCCCH-----------------HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 608998868-----------------98899999999998515984338676773489999999
Q 001487 1016 NCLPIKGDL-----------------IEAKIVHEQLCSMVERSDSDLLGPNHQYLPKIVSVFAE 1062 (1069)
Q Consensus 1016 ~~lp~~~d~-----------------~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~i~~~~~~ 1062 (1069)
..++.+.+. +.+++++++++.++......+ + +..+++.+..
T Consensus 1054 ~~~~~~~~~~~~v~~gp~k~~vd~~l~~rk~a~~~~~~ll~~~~~~i-~-----~~~~~~~~~~ 1111 (1230)
T 1u6g_C 1054 NETKVRKELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSCLDRL-D-----IFEFLNHVED 1111 (1230)
T ss_dssp HTTSCCGGGEEEEEETTEEEEEETHHHHHHHHHHHHHHHHHSSCSSS-C-----HHHHHHHHHH
T ss_pred HHHCCCHHHHEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC-C-----HHHHHHHHHC
T ss_conf 88302687601330589602367748999999999999999888747-8-----9999999980
No 9
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=1.00 E-value=1 Score=363.31 Aligned_cols=771 Identities=15% Similarity=0.157 Sum_probs=535.6
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHCCCC------CCC
Q ss_conf 999779998999999640458887455789879999999998998415-1365999999999999842169------999
Q 001487 68 SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLE-SAKSISKKLCDTVSELASNILP------ENG 140 (1069)
Q Consensus 68 ~~~~~vR~~a~i~L~~~i~~~~~~~w~~l~~~~~~~i~~~ll~~l~~e-~~~~ir~~~~~~i~~i~~~~~~------~~~ 140 (1069)
+.+.++|+.|...|++.- .+....+...|++.+.++ .+..+|..++..+...+....+ ...
T Consensus 12 s~d~~~r~~A~~~L~~~~------------~~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~ 79 (876)
T 1qgr_A 12 SPDRLELEAAQKFLERAA------------VENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQR 79 (876)
T ss_dssp CSCHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH------------HCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 989899999999999987------------16804699999999857899879999999999876055434767899864
Q ss_pred CHHHHHH--------HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHH
Q ss_conf 0015999--------99960299856788999999994554431100009999999998526999-94799999999999
Q 001487 141 WPELLPF--------MFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSN-NPDVKIAALNAVIN 211 (1069)
Q Consensus 141 w~~ll~~--------l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~-~~~vr~~a~~~l~~ 211 (1069)
|+.+.+. +.+.+.++++.+ ..+..+++.++....+ ....+.+++.+...+.++. ++.+|..++++++.
T Consensus 80 w~~l~~~~~~~ik~~ll~~l~~~~~~~-~~~~~~l~~i~~~~~~--~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~ 156 (876)
T 1qgr_A 80 WLAIDANARREVKNYVLHTLGTETYRP-SSASQCVAGIACAEIP--VNQWPELIPQLVANVTNPNSTEHMKESTLEAIGY 156 (876)
T ss_dssp HHTSCHHHHHHHHHHHHHHTTTCCSSS-CHHHHHHHHHHHHHGG--GTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHH
T ss_pred HCCCCHHHHHHHHHHHHHHHCCCCHHH-HHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 406999999999999999867994788-9999999999984676--2256889999999870889879999999999999
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHCCCCHHHHHH--HHHHHHHHHHHHCCCCCC
Q ss_conf 99830791128679756999999999998379--96789999999999873240889995--999999999973278744
Q 001487 212 FIQCLTSSADRDRFQDLLPLMMRTLTESLNNG--NEATAQEALELLIELAGTEPRFLRRQ--LVDVVGSMLQIAEAESLE 287 (1069)
Q Consensus 212 l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~--~~~~~~~~~~~l~~l~~~~~~~~~~~--~~~i~~~l~~~~~~~~~~ 287 (1069)
++.... .+.+...++.++..+...+.++ +..+|..+++++..++...+..+... ...+++.+...+. +.+
T Consensus 157 l~~~~~----~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~--~~~ 230 (876)
T 1qgr_A 157 ICQDID----PEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQ--CPD 230 (876)
T ss_dssp HHHHSC----HHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTT--CSS
T ss_pred HHHHCC----HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCC
T ss_conf 987458----76678679999999998616799988999999999999999999988717899999999998717--998
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHH-HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 578899999999999831015223202445599-9999999842478997222367998755467760204989999999
Q 001487 288 EGTRHLAIEFVITLAEARERAPGMMRKLPQFIN-RLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLA 366 (1069)
Q Consensus 288 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~~~~~~e~ed~~~~~~~~~a~~~l~~l~ 366 (1069)
.++|..+++++..+++. .+. .+.+++. .+++.++..+.+.+ ...+..+...+..++
T Consensus 231 ~~vr~~a~~~l~~l~~~---~~~---~~~~~~~~~l~~~~~~~~~~~~-----------------~~v~~~al~~l~~l~ 287 (876)
T 1qgr_A 231 TRVRVAALQNLVKIMSL---YYQ---YMETYMGPALFAITIEAMKSDI-----------------DEVALQGIEFWSNVC 287 (876)
T ss_dssp HHHHHHHHHHHHHHHHH---SGG---GCHHHHTTTHHHHHHHHHTCSS-----------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---HHH---HHHHHHHHHHHHHHHHHHCCCC-----------------HHHHHHHHHHHHHHH
T ss_conf 89999999999999998---699---9998877899999999963873-----------------499999999999998
Q ss_pred HHC-------------------CCCC----CHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHHHHHCHHHHHHHH
Q ss_conf 872-------------------9964----36879978988436-------99967999999999999942389999719
Q 001487 367 IAL-------------------GGNT----IVPVASEQLPAYLA-------APEWQKHHAALIALAQIAEGCAKVMVKNL 416 (1069)
Q Consensus 367 ~~~-------------------~~~~----~~~~l~~~l~~~l~-------~~~~~~r~aal~~l~~l~~~~~~~~~~~~ 416 (1069)
... +... ..+.+++.+.+.+. +.+|.+|.++..+++.++...++ ..+
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~---~~~ 364 (876)
T 1qgr_A 288 DEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED---DIV 364 (876)
T ss_dssp HHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG---GGH
T ss_pred HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCH---HHH
T ss_conf 87876766510011247775420189999989887079998753133444545217999999999999987758---669
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 99999998517898864899999999986742142277522441589999612699994599999999999651189433
Q 001487 417 EQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEI 496 (1069)
Q Consensus 417 ~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~ 496 (1069)
+.+++.+...+.|+++.+|.+++++++.++....+....++.+.+++.++..++| +++.||..++++++.+++..+...
T Consensus 365 ~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d-~~~~vr~~a~~~l~~~~~~~~~~~ 443 (876)
T 1qgr_A 365 PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKD-PSVVVRDTAAWTVGRICELLPEAA 443 (876)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHCGGGT
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHCCHHC
T ss_conf 9999999988469982899999999999974887778999999999999998679-978999999999999998572011
Q ss_pred -CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf -357569999999998414884399999999999999517--------------65575485566999999960067210
Q 001487 497 -LTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQ--------------EHFQKYYDAVMPFLKAILVNATDKSN 561 (1069)
Q Consensus 497 -~~~~l~~i~~~l~~~l~~~~~~v~~~al~~l~~l~~~~~--------------~~~~~~~~~i~~~l~~~l~~~~~~~~ 561 (1069)
..+|++.+++.++..+.+. ..++..++.+++.++...+ ..+.||++.+++.+...+..... +.
T Consensus 444 ~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~-~~ 521 (876)
T 1qgr_A 444 INDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDG-HQ 521 (876)
T ss_dssp SSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSS-CS
T ss_pred CCHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC-CH
T ss_conf 44777999999999987588-88999999999999998502012344445554032157699999999999727674-20
Q ss_pred CCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 00146999999999975272212663999999999983588999980126999999999978037864322663599998
Q 001487 562 RMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQ 641 (1069)
Q Consensus 562 ~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~ 641 (1069)
..+|..++++++.++..+| ..+.+++..+++.++... ...
T Consensus 522 ~~~r~~~~~~l~~l~~~~~-~~~~~~~~~l~~~l~~~l------------------~~~--------------------- 561 (876)
T 1qgr_A 522 NNLRSSAYESLMEIVKNSA-KDCYPAVQKTTLVIMERL------------------QQV--------------------- 561 (876)
T ss_dssp TTHHHHHHHHHHHHHHTCC-STTHHHHHHHHHHHHHHH------------------HHH---------------------
T ss_pred HHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHH------------------HHH---------------------
T ss_conf 4699999999999999774-311899999999999999------------------999---------------------
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHHHH-HCCCCCHHHHHHHHHHC
Q ss_conf 61569983225889765434688753103213891245302059999999999999999930-10413199889987001
Q 001487 642 SAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELK-EGFFPWIDQVAPTLVPL 720 (1069)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~a~~~l~~l~~~~~-~~~~p~~~~~~~~l~~~ 720 (1069)
+...... . .+++. ....+.+..++.+++.++...+ ..+.||++.+++.++..
T Consensus 562 -~~~~~~~-~------------~~~d~-------------~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~ 614 (876)
T 1qgr_A 562 -LQMESHI-Q------------STSDR-------------IQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRM 614 (876)
T ss_dssp -HTTTTSC-C------------STTHH-------------HHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHH
T ss_pred -HHHHHCC-C------------CHHHH-------------HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_conf -9887124-8------------86359-------------9999999999999999999828542057899999999999
Q ss_pred CCCCC-CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 38769-96799999984899999999999808999999799999999999999999800993989999999999999984
Q 001487 721 LKFYF-HEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQIS 799 (1069)
Q Consensus 721 l~~~~-~~~ir~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~v~~~~l~~l~~~i~~~ 799 (1069)
+.... ...+|..++.+++.++..... .+.+++..++|.+...+....+..++..++.++..+...+
T Consensus 615 l~~~~~~~~v~~~a~~~l~~l~~~~~~-------------~~~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~ 681 (876)
T 1qgr_A 615 FQSTAGSGGVQEDALMAVSTLVEVLGG-------------EFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRAL 681 (876)
T ss_dssp C-----CCHHHHHHHHHHHHHHHHHGG-------------GGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCCCCCHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 985368888508999999999999876-------------0999999999999998758650879999999999999988
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
Q ss_conf 99999988999999999999988866999999720778886764575553366999999999999999998112205649
Q 001487 800 GPLLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVFDQVGEILGTLIKTFKAAFLPFF 879 (1069)
Q Consensus 800 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~ 879 (1069)
|. .+.++++.+.+.+...+. +.+ .+..++..+..+++.++...|+.+.+++
T Consensus 682 ~~-----~~~~~~~~i~~~l~~~l~----------~~~--------------~~~~~~~~~~~~l~~i~~~~g~~~~~~l 732 (876)
T 1qgr_A 682 QS-----NIIPFCDEVMQLLLENLG----------NEN--------------VHRSVKPQILSVFGDIALAIGGEFKKYL 732 (876)
T ss_dssp GG-----GGHHHHHHHHHHHHHHHT----------CTT--------------SCGGGHHHHHHHHHHHHHHHGGGGGGGH
T ss_pred HH-----HHHHHHHHHHHHHHHHHC----------CCC--------------CCHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_conf 78-----546459999999999748----------712--------------3387639999999999997035279999
Q ss_pred HHHHHHHHHHHCCCC---C-------HHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHCCCC--CH
Q ss_conf 998865653206999---8-------88899999979999767225----------66642574899999662699--94
Q 001487 880 DELSSYLTPMWGKDK---T-------AEERRIAICIFDDVAEQCRE----------AALKYYETYLPFLLEACNDE--NQ 937 (1069)
Q Consensus 880 ~~l~~~l~~~l~~~~---~-------~~~r~~a~~~l~~l~~~~~~----------~~~~~~~~i~~~ll~~l~~~--~~ 937 (1069)
..++|.+...+.... + ...|..++.+++.++...+. .+.+|++.+++.+...+.++ +.
T Consensus 733 ~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 812 (876)
T 1qgr_A 733 EVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTD 812 (876)
T ss_dssp HHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHTCSCCCH
T ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCH
T ss_conf 99999999998555899975889999999999999999999997457555554388999999999999999865888888
Q ss_pred HHHHHHHHHHHHHHHHCCC-CCHHH-HHHHHHHHHH-HHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 6888665899799842198-70688-9999999998-61599878803355687899999999865389
Q 001487 938 DVRQAAVYGLGVCAEFGGS-VVKPL-VGEALSRLNV-VIRHPNALQPENLMAYDNAVSALGKICQFHRD 1003 (1069)
Q Consensus 938 ~vr~~a~~~lg~l~~~~~~-~~~~~-~~~~l~~l~~-~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 1003 (1069)
.+|..|+.++|.++...+. .+.++ ...+++.+.. .+..+ +..+|.+++.++|.+.+..+.
T Consensus 813 ~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~i~~ll~~~l~~~------~~~~r~~a~~a~~~~~~~~~~ 875 (876)
T 1qgr_A 813 GVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGRRSK------TNKAKTLARWATKELRKLKNQ 875 (876)
T ss_dssp HHHHHHHHHHHHHHHHHCTHHHHHHHTSHHHHHHHHHHHHCS------CHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHCHHHHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHCC
T ss_conf 999999999999998828488999970489999999875468------876899999999999975347
No 10
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=1.00 E-value=1 Score=360.27 Aligned_cols=564 Identities=15% Similarity=0.228 Sum_probs=413.7
Q ss_pred CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 99917899999996089958989999999886501924899999999806999779998999999640458887455789
Q 001487 18 GPDSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLS 97 (1069)
Q Consensus 18 ~~~~~~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~~p~~~~~~L~~il~~~~~~~vR~~a~i~L~~~i~~~~~~~w~~l~ 97 (1069)
.|+.+++.+++..+++|+++.|++|+++|+++++ +|+++ ..+.+++.++.++.+|++|+++||+.++++ |..++
T Consensus 12 ~~~~~~l~~~l~~~~~p~~~~r~~Ae~~L~~~~~-~p~~~-~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~----W~~l~ 85 (1049)
T 3m1i_C 12 DLDIALLDQVVSTFYQGSGVQQKQAQEILTKFQD-NPDAW-QKADQILQFSTNPQSKFIALSILDKLITRK----WKLLP 85 (1049)
T ss_dssp CCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH-STTGG-GGHHHHHHHCSCHHHHHHHHHHHHHHHHHT----GGGSC
T ss_pred CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH-CCHHH-HHHHHHHHHCCCHHHHHHHHHHHHHHHHHH----CCCCC
T ss_conf 4659999999999868993899999999999883-95699-999999862998899999999999999760----70499
Q ss_pred HHHHHHHHHHHHHHHHHCC--------HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 8799999999989984151--------36599999999999984216999900159999996029985678899999999
Q 001487 98 LHTQSSLKSMLLQSIQLES--------AKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQ 169 (1069)
Q Consensus 98 ~~~~~~i~~~ll~~l~~e~--------~~~ir~~~~~~i~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~ 169 (1069)
++.+..+|+.+++.+.+++ +..+|+.++.+++.|++.++| +.||++++.+.+.++ ++...++.++.+|..
T Consensus 86 ~~~~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p-~~Wp~ll~~L~~~~~-~~~~~~~~~l~~L~~ 163 (1049)
T 3m1i_C 86 NDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWP-QNWPEFIPELIGSSS-SSVNVCENNMIVLKL 163 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTT-TTCTTHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHC-CCHHHHHHHHHHHHH
T ss_conf 999999999999999862776200000289999999999999997681-115479999999871-585889999999999
Q ss_pred HHHHHHH----------------HCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHH-----------
Q ss_conf 4554431----------------1000099999999985269999479999999999999830791128-----------
Q 001487 170 LSQYIGD----------------TLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADR----------- 222 (1069)
Q Consensus 170 l~~~~~~----------------~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~----------- 222 (1069)
+++.+.+ .+..+.+.+++.+...+.+..+..++..+++++..++.|.+.....
T Consensus 164 l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~~~~~~~~ll~~l~~~ 243 (1049)
T 3m1i_C 164 LSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRYIYETNILELLSTK 243 (1049)
T ss_dssp HHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf 99999872600132689999999999999999999999998668889999999999999860889988605599999998
Q ss_pred -------------------------------HHHHHHHHHHHHHHHH-----------HH---HCCCHHHHHHHHHHHHH
Q ss_conf -------------------------------6797569999999999-----------98---37996789999999999
Q 001487 223 -------------------------------DRFQDLLPLMMRTLTE-----------SL---NNGNEATAQEALELLIE 257 (1069)
Q Consensus 223 -------------------------------~~~~~~~~~~l~~l~~-----------~l---~~~~~~~~~~~~~~l~~ 257 (1069)
..+..+++.++..+.. .. .+.+.+.....++.+..
T Consensus 244 ~l~~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~ 323 (1049)
T 3m1i_C 244 FMTSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTT 323 (1049)
T ss_dssp HHHSHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf 68987679999999999994889950346889999999999999988627985417877445771028999999999999
Q ss_pred HHCCCCHH------HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHHHHHHC
Q ss_conf 87324088------999599999999997327874457889999999999983101522320244559999999998424
Q 001487 258 LAGTEPRF------LRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLL 331 (1069)
Q Consensus 258 l~~~~~~~------~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~ 331 (1069)
+++.+... +.+++..+++.++.+... .+++++..++++|..+++.....+.......+++.++++.++..|.
T Consensus 324 ~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~--~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~ 401 (1049)
T 3m1i_C 324 YLARNRALLESDESLRELLLNAHQYLIQLSKI--EERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMV 401 (1049)
T ss_dssp HHHHHHHHHHSCGGGHHHHHHHHHHHHHHHTS--SCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999828821479999999999998868--9089999999999999999974635899999999999999998658
Q ss_pred CCCCCCCCCCCCCC------CCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHC--CCCHHHHHHHHHHHHH
Q ss_conf 78997222367998------755467760204989999999872996436879978988436--9996799999999999
Q 001487 332 DIEDDPLWHSAETE------DEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLA--APEWQKHHAALIALAQ 403 (1069)
Q Consensus 332 ~~~~~~~~~~~~~e------~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~--~~~~~~r~aal~~l~~ 403 (1069)
+++ +.+|..+++. .+|+|+++.++.+..+|..++...+ ..+++.+.+.+.+.++ +.+|+.|+++++++|+
T Consensus 402 ~~e-d~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~~-~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algs 479 (1049)
T 3m1i_C 402 RPE-EVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNV-IDTEEIMISKLARQIDGSEWSWHNINTLSWAIGS 479 (1049)
T ss_dssp CCT-TCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHH
T ss_pred CCC-CEEEEECCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf 996-20000579985048653122279999999999999883698-9999999999998727787898999999999999
Q ss_pred HHHHCHHHHH-HHHHHHHHHHHHHCC-----CCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf 9942389999-719999999985178-----9886489999999998674214227752244158999961269999459
Q 001487 404 IAEGCAKVMV-KNLEQVLSMVLNSFR-----DPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRV 477 (1069)
Q Consensus 404 l~~~~~~~~~-~~~~~i~~~l~~~l~-----d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v 477 (1069)
+++++..... .+++.+++.+..... ++++.+|..+++++|++++++... ..+++.+++.++..+.+ ++++|
T Consensus 480 ia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~--~~~l~~vl~~ll~~l~~-~~~~V 556 (1049)
T 3m1i_C 480 ISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAH--WNFLRTVILKLFEFMHE-THEGV 556 (1049)
T ss_dssp TTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHC--HHHHHHHHHHHHHHTTS-SCHHH
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHCC-CCHHH
T ss_conf 8602376255799999999999877654356654999988999999779999867--89999999999998618-98789
Q ss_pred HHHHHHHHHHHHHCCCCCC-------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Q ss_conf 9999999999651189433-------357569999999998414884399999999999999517--6557548556699
Q 001487 478 QAHAASAVLNFSENCTPEI-------LTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQ--EHFQKYYDAVMPF 548 (1069)
Q Consensus 478 ~~~a~~al~~l~~~~~~~~-------~~~~l~~i~~~l~~~l~~~~~~v~~~al~~l~~l~~~~~--~~~~~~~~~i~~~ 548 (1069)
+..||.++..+++.++... +.||++.+++.+...+...+..-....+++++.++...+ +...+|+..+++.
T Consensus 557 ~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~~~~~~~~~~~~l~~~ 636 (1049)
T 3m1i_C 557 QDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQL 636 (1049)
T ss_dssp HHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 99999999999999889861156778775799999989999985899999999999999997599789999999999988
Q ss_pred HHHHHHHCC--------CC-CCCCHH--HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
Q ss_conf 999996006--------72-100014--69999999999752722126639999999999
Q 001487 549 LKAILVNAT--------DK-SNRMLR--AKSMECISLVGMAVGKDKFRDDAKQVMEVLMS 597 (1069)
Q Consensus 549 l~~~l~~~~--------~~-~~~~lr--~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~ 597 (1069)
+.+.+.... .. +....+ ...+.|++.++.++| ..|.|++..++.-++.
T Consensus 637 ~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~l~~~~~~~~~l~-~~f~p~~~~i~~~~l~ 695 (1049)
T 3m1i_C 637 PNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMG-ADFYPQLGHIYYNMLQ 695 (1049)
T ss_dssp HHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHG-GGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCHHHHCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_conf 9999999999873164640487999999999999999999856-7889999999999999
Done!