Query 001488
Match_columns 1068
No_of_seqs 216 out of 338
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 02:04:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001488.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001488hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2347 Sec5 subunit of exocys 100.0 4E-125 9E-130 1103.9 55.6 890 30-1008 2-934 (934)
2 KOG2346 Uncharacterized conser 100.0 3.4E-36 7.4E-41 337.2 37.2 548 198-953 25-622 (636)
3 PF15469 Sec5: Exocyst complex 100.0 5.8E-38 1.3E-42 326.3 19.4 179 239-417 1-182 (182)
4 PF04124 Dor1: Dor1-like famil 99.5 1.8E-11 4E-16 139.7 34.8 204 217-426 5-211 (338)
5 KOG2069 Golgi transport comple 99.0 1.1E-08 2.4E-13 120.1 20.6 213 203-428 18-237 (581)
6 PF08700 Vps51: Vps51/Vps67; 98.9 5.2E-09 1.1E-13 96.5 7.4 71 201-271 1-71 (87)
7 KOG2033 Low density lipoprotei 98.6 0.0059 1.3E-07 73.8 48.2 199 214-427 12-230 (863)
8 PF10475 DUF2450: Protein of u 98.3 0.00027 5.8E-09 79.7 25.6 197 203-404 10-211 (291)
9 KOG2176 Exocyst complex, subun 98.1 0.067 1.5E-06 66.4 46.9 130 211-348 36-165 (800)
10 PF04100 Vps53_N: Vps53-like, 97.8 0.0042 9.1E-08 72.8 24.3 166 204-383 2-181 (383)
11 PF06248 Zw10: Centromere/kine 97.7 0.31 6.7E-06 60.5 39.4 161 218-385 6-179 (593)
12 KOG2307 Low density lipoprotei 97.5 0.38 8.1E-06 57.8 44.0 193 200-404 27-234 (705)
13 PF10392 COG5: Golgi transport 97.2 0.0026 5.5E-08 63.8 10.8 113 202-326 4-128 (132)
14 PF04091 Sec15: Exocyst comple 97.1 0.0025 5.5E-08 72.7 10.5 141 804-955 142-288 (311)
15 PF06148 COG2: COG (conserved 96.5 0.0031 6.7E-08 63.1 4.9 68 200-270 7-74 (133)
16 PF10191 COG7: Golgi complex c 96.0 7.5 0.00016 50.0 56.6 219 200-427 4-237 (766)
17 PF04048 Sec8_exocyst: Sec8 ex 95.7 0.1 2.2E-06 53.1 11.3 125 202-332 17-141 (142)
18 KOG3691 Exocyst complex subuni 95.2 0.35 7.6E-06 60.7 15.4 148 218-370 42-191 (982)
19 KOG2180 Late Golgi protein sor 95.1 3.4 7.4E-05 51.4 23.0 173 201-385 14-198 (793)
20 PF04437 RINT1_TIP1: RINT-1 / 94.5 0.48 1E-05 57.6 14.3 138 797-942 300-443 (494)
21 PF06046 Sec6: Exocyst complex 89.2 27 0.00058 43.2 20.5 84 836-926 391-476 (566)
22 PF10474 DUF2451: Protein of u 79.9 29 0.00062 38.5 13.2 88 835-927 78-171 (234)
23 PF14923 CCDC142: Coiled-coil 71.2 55 0.0012 39.6 13.3 95 833-935 257-362 (450)
24 KOG4424 Predicted Rho/Rac guan 66.0 71 0.0015 39.6 12.7 143 281-444 109-254 (623)
25 PF04129 Vps52: Vps52 / Sac2 f 63.5 3.2E+02 0.007 33.8 18.3 155 282-452 47-216 (508)
26 KOG4648 Uncharacterized conser 54.5 1.2E+02 0.0027 35.5 11.5 91 332-426 106-213 (536)
27 KOG2115 Vacuolar sorting prote 52.7 6.9E+02 0.015 33.1 28.9 128 251-383 268-398 (951)
28 KOG0553 TPR repeat-containing 51.6 1.1E+02 0.0024 35.3 10.5 91 302-408 76-183 (304)
29 cd07657 F-BAR_Fes_Fer The F-BA 45.1 4.8E+02 0.01 29.1 14.5 50 220-269 66-115 (237)
30 cd07651 F-BAR_PombeCdc15_like 44.4 4.7E+02 0.01 28.7 15.0 39 220-258 61-99 (236)
31 PF06008 Laminin_I: Laminin Do 43.4 5.2E+02 0.011 28.9 15.2 23 356-378 120-142 (264)
32 PF12022 DUF3510: Domain of un 42.9 79 0.0017 31.7 7.0 55 836-890 22-77 (125)
33 PF11547 E3_UbLigase_EDD: E3 u 41.4 35 0.00076 28.8 3.4 30 980-1009 7-40 (53)
34 KOG0972 Huntingtin interacting 38.8 3.3E+02 0.0071 31.4 11.4 82 201-292 239-320 (384)
35 COG2904 Uncharacterized protei 38.6 26 0.00056 35.1 2.7 73 149-226 28-112 (137)
36 KOG2347 Sec5 subunit of exocys 37.1 99 0.0022 40.0 8.0 173 192-386 76-268 (934)
37 PF06419 COG6: Conserved oligo 35.8 5.3E+02 0.012 32.8 14.3 163 773-957 336-511 (618)
38 KOG1925 Rac1 GTPase effector F 35.7 5E+02 0.011 32.0 12.8 67 365-431 517-595 (817)
39 KOG4603 TBP-1 interacting prot 34.7 3E+02 0.0065 29.4 9.6 85 227-349 80-164 (201)
40 PF09726 Macoilin: Transmembra 34.2 1.7E+02 0.0036 37.7 9.5 107 221-334 547-656 (697)
41 PF10516 SHNi-TPR: SHNi-TPR; 32.6 34 0.00074 27.4 2.1 21 333-353 11-31 (38)
42 KOG2398 Predicted proline-seri 31.7 9.8E+02 0.021 30.5 15.4 48 221-268 49-96 (611)
43 cd07686 F-BAR_Fer The F-BAR (F 30.5 8.1E+02 0.018 27.4 14.5 50 219-268 65-114 (234)
44 cd07653 F-BAR_CIP4-like The F- 29.2 8E+02 0.017 26.9 13.2 42 219-260 65-106 (251)
45 KOG0780 Signal recognition par 28.9 1.2E+02 0.0026 36.4 6.3 59 202-270 281-339 (483)
46 PF10158 LOH1CR12: Tumour supp 27.9 3.4E+02 0.0074 27.7 8.7 67 204-270 22-99 (131)
47 PF03670 UPF0184: Uncharacteri 27.3 65 0.0014 30.3 3.2 44 204-250 21-64 (83)
48 cd07648 F-BAR_FCHO The F-BAR ( 26.1 6.1E+02 0.013 28.3 11.3 47 337-383 164-210 (261)
49 KOG4514 Uncharacterized conser 24.3 4.9E+02 0.011 28.0 9.2 20 299-318 200-219 (222)
50 PF04124 Dor1: Dor1-like famil 24.2 1.2E+03 0.025 27.2 15.6 38 312-349 155-192 (338)
51 PF04212 MIT: MIT (microtubule 24.1 1.5E+02 0.0034 26.0 5.0 18 336-353 18-35 (69)
52 cd07673 F-BAR_FCHO2 The F-BAR 24.0 9.1E+02 0.02 27.3 12.2 49 336-384 170-218 (269)
53 cd02683 MIT_1 MIT: domain cont 23.9 1.7E+02 0.0037 26.9 5.3 48 335-382 18-73 (77)
54 cd07649 F-BAR_GAS7 The F-BAR ( 22.2 1.1E+03 0.024 26.2 13.2 47 337-383 168-214 (233)
55 PF05837 CENP-H: Centromere pr 22.2 76 0.0017 30.9 2.8 40 802-843 58-97 (106)
56 PF02809 UIM: Ubiquitin intera 22.0 67 0.0014 21.8 1.6 12 5-16 1-12 (18)
57 smart00726 UIM Ubiquitin-inter 21.4 68 0.0015 23.7 1.7 12 6-17 1-12 (26)
58 PF00515 TPR_1: Tetratricopept 20.7 81 0.0018 23.2 2.2 21 333-353 11-31 (34)
59 PF13176 TPR_7: Tetratricopept 20.4 82 0.0018 24.1 2.2 20 333-352 9-28 (36)
No 1
>KOG2347 consensus Sec5 subunit of exocyst complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.1e-125 Score=1103.93 Aligned_cols=890 Identities=42% Similarity=0.612 Sum_probs=727.3
Q ss_pred CCCCCcccccCCCCCc-------cccCCCCCCCCCcccccccceeeecccCCccccchh---------hhhhh-cccCCc
Q 001488 30 PRKPVTNYVQQPKSAA-------TQKGGRSQGKKYEEEEESEVEMLSISSGDEEVSRDR---------GLAAK-NRARGR 92 (1068)
Q Consensus 30 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~-~~~~~~ 92 (1068)
.++||.+++|||++.. |+.+..-+++.+. +|+|+|++|+|+++||+.++.+ +++++ .+|+++
T Consensus 2 ~~np~~~~~q~p~vtg~s~~e~~p~t~~~ir~e~l~-~~~sd~~~l~i~g~D~lls~~~~s~~~~~~~~g~a~~~~G~~r 80 (934)
T KOG2347|consen 2 TRNPVARLAQQPRVTGLSPNEGGPGTAVTIRKEFLG-NDESDVIGLSICGGDELLSAERKSPNGIIARVGLAKREKGDIR 80 (934)
T ss_pred CCCchhhccCCccccCCCCCCCCCCcceeecCCccC-cchhhHhhhhhcccchhhhhhcCCCCccccccccccCCCCceE
Confidence 4789999999877662 2222355667777 9999999999999999877664 23233 278888
Q ss_pred cCCCCCCCCCCCCccccccHHHHHHHHHHhhhccCcccccccccccchhhcc-cccccccccCCCCCCCCCCCCCc-cch
Q 001488 93 RDDDGTWDGDEPNCWKRVDEAELARRVREMRETRTAPVAQKYEKKPSMAAGI-KGFSTLQSFPRGMECIDPLGLGI-IDN 170 (1068)
Q Consensus 93 ~~~~~~~~~~~p~~w~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~~DPLGl~~-~~~ 170 (1068)
..++..|+|-.|.+|.+|+.+++. +++|+..+..| ++++.++. ...+ ++...+|..|+.+...+|+-..+ ++.
T Consensus 81 ~~~~~~~~g~s~~~f~r~~~~qi~--~l~~s~~~~d~--~~~~~~~~-~~~~~~~~t~l~~~~~l~~~i~~~k~~~~~d~ 155 (934)
T KOG2347|consen 81 VTTLSGGKGTSTVCFRRVNHEQIG--PLDESAVRVDE--QQDQRKVP-GRLKGVALTSLQSEPPLGECIEPLKLKINEDN 155 (934)
T ss_pred EeeccCccccCchhhhhhhHhhhc--cchhhhhhccc--cccccccc-ccccccCCcccccCCCcccccCchhhcchhhh
Confidence 899999999999999999999998 99999999888 66666544 3322 37777777777677777776544 333
Q ss_pred hhhhhhcccCCCCCCCCcCCCCchhhcccCCCCCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHhhh
Q 001488 171 KTLRLITDSSGSTPKSDRDNVDNSLREKLMYFSDSFNAKLFLSRVHQNTSSADLEAGALALKTDLKGRTQQRKQLVKDNF 250 (1068)
Q Consensus 171 ~~L~~~~~~~~~~P~~~~~~~~p~lr~~~disS~~FdP~~FLs~vH~~tS~~dL~~gl~~L~r~I~~~~~~LK~LV~eNf 250 (1068)
+ .++|.. .+||.+++|+|+|||.++|+++||+||+.|...|++..+..++.-+.||++||
T Consensus 156 ~------------------~lfp~~--~~Dl~se~Fspkw~L~enH~~ts~edLk~~i~~lK~~~n~~~~~~~~lvK~n~ 215 (934)
T KOG2347|consen 156 K------------------TLFPIT--SVDLRSEHFSPKWFLLENHQDTSFEDLKAGILNLKRDLNGRKEGSLQLVKDNF 215 (934)
T ss_pred h------------------hhcccc--ccccccccCChhHHHHhhhhhccHHHHHHHHHHHHHhhcchhhhhHHHHhcch
Confidence 3 345554 57899999999999999999999999999999999999999999999999999
Q ss_pred hhhHhhhhhHHHHHHHhhhhcCCCCCCCchhHHhhHHHHHHHHHhhhhhHHHhHHHHHHHHHHHHHHHHHHHHhcCchhh
Q 001488 251 DCFVSCKTTIDDIESKLKRIEEDPEGSGTAHLFKLMQGVSSQANRAFEPLFERQAQAEKIRSVQGMLQRFRTLFNLPSTI 330 (1068)
Q Consensus 251 ~kFI~akdTId~m~~~~k~~e~~~~~~~t~~L~~~L~~i~~~a~~i~~pLler~~KaekLr~vl~~L~R~kfLFeLP~~L 330 (1068)
+.||.|++|+++|+.++++.+.+..+++|.+|.+.|+++.+.|+.+|.+|++|++|||++|+++++|+||+|||+||+++
T Consensus 216 ~~fi~~~dtl~~i~~kLe~~e~~~~gs~t~~l~n~i~~~~s~ad~iF~~vl~Rk~~ADstRsvL~~lqRfkfLFnLp~~i 295 (934)
T KOG2347|consen 216 DSFISCKDTLDNIHQKLERGEEDPHGSGTTKLENCIKNSTSRADLIFEDVLERKDKADSTRSVLGVLQRFKFLFNLPSNI 295 (934)
T ss_pred hHHHHHHHHHHHHHHHHhccccCccchHHHHHHHHHHHhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHhcchhh
Confidence 99999999999999999998888899999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhcCChHHHHHHHHHhhhhccCcchhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHhcCCCCCChH
Q 001488 331 RGSISKGEFDLAVREYKKAKSIALPSHVNILKRVLEEVEKVMQEFKAMLYKSMEDPHIDLTNLENTVRLLLELEPESDPV 410 (1068)
Q Consensus 331 ~~~I~~gdYe~aV~dY~kAk~L~~~~~v~vf~kV~~EVE~ii~~~k~~L~~~L~~~~~s~ee~~~lI~lLleL~~~~dPi 410 (1068)
+++|++|+|+.+|++|+|||+++.+++|++|+++++|||..|+.||..|+++|.+++.+.++++++|++|.+|++++||+
T Consensus 296 er~i~kGeYd~vvndYekAKsl~~~t~v~~Fkk~l~Eve~~m~~~k~~l~~kli~~p~t~~dq~~~ir~L~~L~~~~dP~ 375 (934)
T KOG2347|consen 296 ERSIKKGEYDTVVNDYEKAKSLFGKTEVNLFKKVLEEVEKRMQSFKETLYRKLIDTPITFEDQSKLIRYLSELEPESDPV 375 (934)
T ss_pred hhHhhcCCceeeccchhhHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCcccCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhccCCCcccccccCCCCCCCCCCCCCChhhH
Q 001488 411 WHYLNVQNHRIRGLFEKCTLDHEARMETLHNELHERAMSDARWLQIQQDLNQSSGADYSVTCGNIQPIDSLPVELSGEEV 490 (1068)
Q Consensus 411 w~~L~sq~~~I~~~le~~~~~~~~r~e~l~~~l~~~~~s~~~~~~l~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~ev 490 (1068)
|+||..|++||..+++.|...|+++++.++ .++ +|.+.+++....|.-+.....+ .- .. ....++.+.
T Consensus 376 wq~I~~q~k~i~~L~~s~~~~~~~~l~~~~-------~~~-~~~q~s~~g~~~S~t~s~~~~~-~~--q~-~~~~~~~~k 443 (934)
T KOG2347|consen 376 WQCIGVQNKRILGLLESCWDDHVARLEGLR-------LSD-KWTQPSQNGVHLSDTASSMENS-QN--QV-INEWKIREK 443 (934)
T ss_pred hhhccccchHHHhhhhhcchhHHHHhhccc-------ccc-cccchhhcccccCchHHHHhhh-hh--hh-ccchhhhhh
Confidence 999999999999999999999999999875 133 5665554442211111111111 00 10 112334455
Q ss_pred HHHHHHHHHHHHHHHHhhchHHHHHHHHhhcC-ccccccccccCCccccCCHHHHHHHHHHHHHHHHHHhhhhcCC----
Q 001488 491 DAFRGRYIRRLTAVLIHHIPAFWKVALSVFSG-KFAKAEEKVGEGKYSIHSLDEVAGMIRNTISVYEIKVHNTFND---- 565 (1068)
Q Consensus 491 ~~l~~~fi~~Lt~vil~~lp~FWklaqs~~~G-k~~k~~e~~~~~~~s~~~~~e~~~mi~e~i~~y~~~vs~~F~~---- 565 (1068)
...++.||++||+++++++|.|||+|++||+| .|..... .........-.+.++.|++++....+.+....|+.
T Consensus 444 ~~~r~~fiekL~~l~~s~lP~fWKl~~sy~~G~~~~~~sq-~~~s~~~k~~qn~~~~~~~~v~~sLv~~~~~~~~t~s~~ 522 (934)
T KOG2347|consen 444 TPERVNFIEKLTDLLLSQLPIFWKLAISYFNGDLFSPSSQ-VQDSDINKMEQNNEVREKREVFHSLVELALMDRFTLSQS 522 (934)
T ss_pred chHHHHHHHHHHHHHHHhCcHHHHHHHHHhcccccCcccc-cChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Confidence 56788999999999999999999999999999 4433220 00000111112244556655554444333322222
Q ss_pred ----------CCCCccchHHHHHHHHHHHHHHHhhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc---c
Q 001488 566 ----------LEDSNILRSYMRDAIEEISKACQAFEAKESAPPVAVMVLRTLQAEITKIYIGRLCSWMQGSTDGIS---K 632 (1068)
Q Consensus 566 ----------l~~~n~~~~yL~~~L~~v~~~~~sL~~~~~~p~~~~~~L~~L~~~~r~~~v~~lca~~~~~ae~i~---~ 632 (1068)
.|......|||+.+++.|+.+|++|+....+|..+++.|+.|+.+ .++.|+|+|++..+|.|+ .
T Consensus 523 ~~~a~~~~~~~dis~~~~~~~~~~i~~vr~~~~sL~ale~~P~~~lq~Iq~li~~---~rl~~~~~~~~~~~e~is~l~~ 599 (934)
T KOG2347|consen 523 DGKAKSPFGDADISRSLLPWMPLAIKTVRKACQSLEALESLPHDALQPIQKLITE---ARLQCLSSWMRASTERISTLAK 599 (934)
T ss_pred cccccCCcCCcccccccCccchhHHHHhHHHHHHHHHhhhChHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHh
Confidence 222222237999999999999999999555998888888888777 788889999999999999 7
Q ss_pred ccccccccccccCCCCCccccchHHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 001488 633 DETWIPVSILERNKSPYTISYLPLAFRSIMKSSMDQISLMIHSLRSEATKSEDMYAQLLEIQESVRLSFLNRFLDFAGHL 712 (1068)
Q Consensus 633 lEDW~~~~~~e~~~~~~~iT~LP~~Fe~~i~s~mqki~~~l~~~~~E~~~~~dv~~~l~~~~~~Vr~~F~~~~~af~~~L 712 (1068)
.|+|+++...+|+ .++|+||.+||++|+++|+.+..++.+..+|.. +|. ...|+++|...+++...+|..|+
T Consensus 600 re~W~~~s~~~rn---~s~t~LP~~fEt~ivssl~q~~~~~l~~~gEa~----~f~-~~~~~~~i~el~I~~~~~fl~c~ 671 (934)
T KOG2347|consen 600 RETWIPDSILERN---RSITYLPLAFETVIVSSLEQVNSVLLSFEGEAA----LFE-QPDMQAEIEELSISVRLAFLNCF 671 (934)
T ss_pred hhccccchhhhcc---cchhhhhHHHHHHHhhhHHhhhhHHhhcccccc----ccC-chHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999777876 569999999999999999999999877777665 333 25666667777777777777777
Q ss_pred HHHhhhhhhccCCccccc-----cccCCCCCCCCCCcCCCCCCCCCCCceeeeeecchhHHHhhhHHHHHHHHHhhcccc
Q 001488 713 EHIASELAQNKSNKESQH-----LQNGYSSDPCTESLSDIPGSVVDPHQRLLIVISNIGYCKDELSSELYNKYKDIWLQS 787 (1068)
Q Consensus 713 e~la~~~~~~~~~~e~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~RLLltLSN~~~lr~~viP~L~~~fe~~f~~~ 787 (1068)
|+++.-.++-. -+.+.. .++++....++.++.+.+..+++|++|||+||||++||+...+|+|.+.|+.-|--.
T Consensus 672 e~L~~h~~~~~-~~~~q~~t~~~~~~~~~~~~qed~~~ns~~~~~~~~qrlLi~LsN~~yc~~~~~~~l~n~fk~~~~~~ 750 (934)
T KOG2347|consen 672 EDLAIHLEQIG-ADLSQLTTQIEGQNGFSNAHQEDISINSADSVVDPEQRLLIVLSNIGYCKDILAPTLLNIFKYTWLLS 750 (934)
T ss_pred HHhhhcccccC-CchhhcccccccccccccccchhhhcccccccCChhheeEEEeccHHHHHHHHHHHHHHHHHHHhhcc
Confidence 77775111100 111111 133444444444555566778899999999999999999999999999996655443
Q ss_pred cccccccccHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHhhhhcCCCCCCCCCCCCccchHHHHHHHHHHHHHHHHhh
Q 001488 788 REKDQEGTDIQDLVMSFSGLEEKVLEQYTFAKANLIRTAATTFLLDSGVQWGAAPAVKGVRDVAVELLHTLVAVHAEVFA 867 (1068)
Q Consensus 788 ~~l~~~~~~i~~v~~~l~qLd~rLfe~Y~~~Ka~~L~~~I~~gil~~g~dW~~~~~P~~VRpYv~E~Ll~LV~VHAEV~t 867 (1068)
. +-+.+....|++|+.+||+.||+.|+++|+++++||||.+||+|..+|+|++||+|++|+|++||+||||||+
T Consensus 751 ~------k~iE~is~s~s~l~s~l~e~Yi~~k~~~i~~alEp~~~~~~~~W~~~~~~~~irdYa~E~l~~lV~VhaEvf~ 824 (934)
T KOG2347|consen 751 R------KNIEDISMSLSGLGSKLFENYIEDKADPIRGALEPYLLDGGIQWGMAPPVKGIRDYAKEALHNLVAVHAEVFA 824 (934)
T ss_pred c------ccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccchhhccccccccCCCccchHHHHHHHHHHHHHHHHHHHh
Confidence 2 2333445689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHhhhhhcccc-ccccCchhhHHHHhhHHHHHHhhcccCChhHHHHHHHHHHHHHHHHH
Q 001488 868 GAKPLLDKTLGILVEGLIDTFLSLFDENQSNN-LKSLDANGFCQLMLELDYFETILNPYFTHDARESLKNLQGVLLEKAT 946 (1068)
Q Consensus 868 ia~~Lv~rvLs~Lve~vaeelL~~F~~~~~~~-v~~fs~~G~lQAtLDIefl~qtLs~Y~T~~A~~~~~~l~~~~~~~a~ 946 (1068)
++|+|+++||..+++.++++|+++|+ | |++|+.+|.+|+++|||||+++|+.|.|+.|++.|++ |.
T Consensus 825 iap~Ll~kiL~~~ve~i~d~L~~l~~-----~~v~s~S~nG~lQi~vdl~~l~~~l~~Ylt~~a~~slkq--------al 891 (934)
T KOG2347|consen 825 IAPQLLDKILGETVEGISDELLRLFS-----CDVQSFSANGALQIMVDLEYLEDVLGPYLTKDAKESLKQ--------AL 891 (934)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHhh-----hhhhccCCCcceeeeeeHHHHHHHHHHhccHHHHHHHHH--------HH
Confidence 99999999999999999999999998 6 9999999999999999999999999999999999995 88
Q ss_pred hHHHhhhcCCCCCCCCCCCCchhhhhhhcCCCCCChHHHHHHHHHHHHHHHHHHHhhhhcch
Q 001488 947 VSVAEAVENPGHHRRPTRGSEDALADERQQGMTVSPDDLIALAQQYSSELLQAELERTRINT 1008 (1068)
Q Consensus 947 e~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1008 (1068)
|.+++.+.+ +++|+.++...+++++ ..|+.||. .++++||+|+
T Consensus 892 e~l~~~~~g-----~dtr~lee~ln~~k~s---------m~l~Lqc~-----~a~~~t~~~t 934 (934)
T KOG2347|consen 892 EALSECLSG-----GDTRRLEECLNDDKQS---------MRLQLQCF-----QALEDTRFNT 934 (934)
T ss_pred HHhhhhccC-----cchhhHHHHHHHhhHH---------HHHHHHHH-----HHhhhhhcCC
Confidence 888888888 5999999999999998 67899996 7899999985
No 2
>KOG2346 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=3.4e-36 Score=337.16 Aligned_cols=548 Identities=16% Similarity=0.227 Sum_probs=378.2
Q ss_pred ccCCCCCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhHhhhhhHHHHHHHhhhhcCCCCCC
Q 001488 198 KLMYFSDSFNAKLFLSRVHQNTSSADLEAGALALKTDLKGRTQQRKQLVKDNFDCFVSCKTTIDDIESKLKRIEEDPEGS 277 (1068)
Q Consensus 198 ~~disS~~FdP~~FLs~vH~~tS~~dL~~gl~~L~r~I~~~~~~LK~LV~eNf~kFI~akdTId~m~~~~k~~e~~~~~~ 277 (1068)
..|+++++|||+.||.++.+++++++|++.+..|.++|+.+|++||+|||+||||||+|+|||++|+++|..|+.+|.+
T Consensus 25 ptDlngahFDpEvyldkL~REcpLaqLidsetdMV~qIRaLDSDmqtLVYENYNKFisATdTirkmk~~f~~me~eMd~- 103 (636)
T KOG2346|consen 25 PTDLNGAHFDPEVYLDKLPRECPLAQLIDSETDMVQQIRALDSDMQTLVYENYNKFISATDTIRKMKSNFFGMEQEMDG- 103 (636)
T ss_pred ccccCCCCCCHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhchHHHHHHHhhcchhhhcchHHHHHHhhhhhhcchhhh-
Confidence 5689999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CchhHHhhHHHHHHHHHhhhhhHHHhHHHHHHHHHHHHHHHHHHHHhcCchhhHhhhhcCChHHHHHHHHHhhh-hccCc
Q 001488 278 GTAHLFKLMQGVSSQANRAFEPLFERQAQAEKIRSVQGMLQRFRTLFNLPSTIRGSISKGEFDLAVREYKKAKS-IALPS 356 (1068)
Q Consensus 278 ~t~~L~~~L~~i~~~a~~i~~pLler~~KaekLr~vl~~L~R~kfLFeLP~~L~~~I~~gdYe~aV~dY~kAk~-L~~~~ 356 (1068)
|+.+|..+++.+.++...|.++++.|.++-....++.+.+|+|+||.+|++|++.+.|..|++.|..|.. |-+|.
T Consensus 104 ----L~~~ms~i~~~s~~l~g~L~ekre~I~kLg~~~~llrkvqfifdLP~rLrkc~~~~aYG~avR~~~~A~~~L~qY~ 179 (636)
T KOG2346|consen 104 ----LEEVMSSIQSKSDGLAGSLFEKRELIKKLGQRPPLLRKVQFIFDLPRRLRKCGRAPAYGAAVRGSSEATGKLRQYD 179 (636)
T ss_pred ----HHHHHHHHhhhhccccchhHHhHHHHHHhcCCccchhhhHHHhhhHHHHHHhccccccchhhccccccccchhhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999987 45677
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHhcCCCCCChH-HHHHHHhHHHHHHHHHHHHHHHHHH
Q 001488 357 HVNILKRVLEEVEKVMQEFKAMLYKSMEDPHIDLTNLENTVRLLLELEPESDPV-WHYLNVQNHRIRGLFEKCTLDHEAR 435 (1068)
Q Consensus 357 ~v~vf~kV~~EVE~ii~~~k~~L~~~L~~~~~s~ee~~~lI~lLleL~~~~dPi-w~~L~sq~~~I~~~le~~~~~~~~r 435 (1068)
+.|.|+-+...+++|+..+-++|..+|.++..+.+...+++.+|+.||.+.|-. -.+|.+....|
T Consensus 180 ~~psfq~~~~~seei~~rl~~qL~~rlr~~~sga~~raEAv~LLl~lg~p~del~~~lL~~~eqsL-------------- 245 (636)
T KOG2346|consen 180 GRPSFQEDDVPSEEIRLRLVAQLGTKLRSDSSGAQARAEAVVLLLQLGVPVDELKAKLLEKLEQSL-------------- 245 (636)
T ss_pred CCCcHHHhccchHHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhccc--------------
Confidence 899999999999999999999999999999999999999999999997764332 22222111000
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHhhhccCCCcccccccCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHhhchHHHHH
Q 001488 436 METLHNELHERAMSDARWLQIQQDLNQSSGADYSVTCGNIQPIDSLPVELSGEEVDAFRGRYIRRLTAVLIHHIPAFWKV 515 (1068)
Q Consensus 436 ~e~l~~~l~~~~~s~~~~~~l~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~ev~~l~~~fi~~Lt~vil~~lp~FWkl 515 (1068)
..|+ - . + +.-..|+.+|+++...+. --+
T Consensus 246 -DvL~--------------------~-----------------~--d---------~~~s~fv~~l~s~a~t~~---alv 273 (636)
T KOG2346|consen 246 -DVLQ--------------------I-----------------K--D---------EEASTFVEDLDSSADTES---ALV 273 (636)
T ss_pred -hhhe--------------------e-----------------e--c---------ccccccccchhhhhhhhh---hhh
Confidence 0000 0 0 0 001145556666554330 000
Q ss_pred HHHhhcCccccccccccCCccccCCHHHHHHHHHHHHHHHHHHhhhhcCCCCCCcc--c----hHHHHHHHHHHH--HHH
Q 001488 516 ALSVFSGKFAKAEEKVGEGKYSIHSLDEVAGMIRNTISVYEIKVHNTFNDLEDSNI--L----RSYMRDAIEEIS--KAC 587 (1068)
Q Consensus 516 aqs~~~Gk~~k~~e~~~~~~~s~~~~~e~~~mi~e~i~~y~~~vs~~F~~l~~~n~--~----~~yL~~~L~~v~--~~~ 587 (1068)
-.. ..+++...+|...||..=.. | ..+.... + .+-++++|..+. .|.
T Consensus 274 ~~~----------------~~~e~~~~d~S~~vRAldr~--------f-r~s~~r~~~~a~~l~~~~~el~~~v~~~e~~ 328 (636)
T KOG2346|consen 274 HPA----------------KIHEDAVRDFSEAVRALDRI--------F-RDSEERLFKLARALTAMLPELLLSVLLRECF 328 (636)
T ss_pred hhh----------------hhhhccccchHHHHHHHHHH--------c-ccccchHHHhhhhhHHhhHHHHHHHHHHHHH
Confidence 000 11112222454444443222 2 1111110 0 001111111110 000
Q ss_pred HhhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCCccccchHHHHHHHHHHHH
Q 001488 588 QAFEAKESAPPVAVMVLRTLQAEITKIYIGRLCSWMQGSTDGISKDETWIPVSILERNKSPYTISYLPLAFRSIMKSSMD 667 (1068)
Q Consensus 588 ~sL~~~~~~p~~~~~~L~~L~~~~r~~~v~~lca~~~~~ae~i~~lEDW~~~~~~e~~~~~~~iT~LP~~Fe~~i~s~mq 667 (1068)
..| +...+-++.++.++|..+ -+.++++
T Consensus 329 l~l-------~ri~~~f~~~L~evr~al-------------------------------------------i~~L~s~-- 356 (636)
T KOG2346|consen 329 LIL-------NRIYQDFRQLLDEVRGAL-------------------------------------------IKDLISG-- 356 (636)
T ss_pred HHH-------HHHHHHHHHHHHHHHHHH-------------------------------------------HHHHHHH--
Confidence 000 111222222222222222 1111111
Q ss_pred HHHHHHhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhccCCccccccccCCCCCCCCCCcCCC
Q 001488 668 QISLMIHSLRSEATKSEDMYAQLLEIQESVRLSFLNRFLDFAGHLEHIASELAQNKSNKESQHLQNGYSSDPCTESLSDI 747 (1068)
Q Consensus 668 ki~~~l~~~~~E~~~~~dv~~~l~~~~~~Vr~~F~~~~~af~~~Le~la~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 747 (1068)
|.+. .-++|.. +++..+-=.+++- +.++. + .
T Consensus 357 ---------------------~~q~----~~~~~k~---sLaa~~Lfta~~v---------------sfsN~--p----~ 387 (636)
T KOG2346|consen 357 ---------------------WIQK----GSQDFKR---SLAAQFLFTAGKV---------------SFSND--P----E 387 (636)
T ss_pred ---------------------HHHH----HHHHHHH---HHHHHHHHhcccc---------------ccccC--C----C
Confidence 0000 1111111 1222111112110 00000 0 1
Q ss_pred CCCCCCCCceeeeeecchhHHHhhhHHHHHHHHHhhccccccccccc------ccHHHHHHHHHHHHHHHHHHHHHhhhH
Q 001488 748 PGSVVDPHQRLLIVISNIGYCKDELSSELYNKYKDIWLQSREKDQEG------TDIQDLVMSFSGLEEKVLEQYTFAKAN 821 (1068)
Q Consensus 748 ~~~~~~~~~RLLltLSN~~~lr~~viP~L~~~fe~~f~~~~~l~~~~------~~i~~v~~~l~qLd~rLfe~Y~~~Ka~ 821 (1068)
+.+..+.+.+|++++..++.+...++|++.+.--..|.. +..+. -+.-+++.++. -.+|++.|++..+-
T Consensus 388 ~~~S~~~hegLiv~~~~~~li~~~~~~~~~~~~a~y~l~---l~~eqF~~~p~~~v~~lc~~~r--a~kLl~hY~~~~gl 462 (636)
T KOG2346|consen 388 GKSSDKIHEGLIVVLAQLSLIEQKVIPRVTEEIAAYFLG---LNSEQFENGPAFIVGELCRVFR--AEKLLQHYIDTRGL 462 (636)
T ss_pred cccccchhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHh---cCHHHHhcCCCcchHHHHHHHH--HHHHHHHHHhhcch
Confidence 111335678899988888888899999887654443322 11100 13334555666 88999999999999
Q ss_pred hHHHHHHhhhhcCCCCCCCCCCCCccchHHHHHHHHHHHHHHHHhhcchh----------------hH---------HH-
Q 001488 822 LIRTAATTFLLDSGVQWGAAPAVKGVRDVAVELLHTLVAVHAEVFAGAKP----------------LL---------DK- 875 (1068)
Q Consensus 822 ~L~~~I~~gil~~g~dW~~~~~P~~VRpYv~E~Ll~LV~VHAEV~tia~~----------------Lv---------~r- 875 (1068)
.++.++++.|.. -+|.....|.+||.||.-.+..|-.|-.||.-+-|. ++ +|
T Consensus 463 ~vs~~LrK~~~t--~~w~~~~epr~vra~v~r~vee~~~~d~ev~lll~~~rK~k~s~~~~~~~~t~l~t~~~kLf~eri 540 (636)
T KOG2346|consen 463 KVSVLLRKRFKT--PNWVKHKEPREVRAYVDRFVEELEEVDKEVKLLLPQFRKHKRSGSNKMARSTLLETHLAKLFKERI 540 (636)
T ss_pred hHHHHHHHHhcC--CccccccccchHHHHHHHHHHHHHHHhHHHHHhccccccccccCccccchhHHHHHHHHHHHHHHh
Confidence 999999998875 699999999999999999999999999999654433 11 11
Q ss_pred --------HHHHHHHHHHHHHHHhhhhhccccccccCchhhHHHHhhHHHHHHhhcccCChhHHHHHHHHHHHHHHHHHh
Q 001488 876 --------TLGILVEGLIDTFLSLFDENQSNNLKSLDANGFCQLMLELDYFETILNPYFTHDARESLKNLQGVLLEKATV 947 (1068)
Q Consensus 876 --------vLs~Lve~vaeelL~~F~~~~~~~v~~fs~~G~lQAtLDIefl~qtLs~Y~T~~A~~~~~~l~~~~~~~a~e 947 (1068)
.-.+++..+..-+|+.|.++ ++++.||.-|+.|..+|+.||+..|..++.+++ .+..+.|+++..|.+
T Consensus 541 d~f~~veFn~~SvvT~ivK~~LK~l~E~--vRLqTf~rfG~qQvQvDc~fLq~~L~~~V~DE~--~v~~llDevi~sA~~ 616 (636)
T KOG2346|consen 541 DIFTKVEFNQESVVTTIVKLCLKSLQEY--VRLQTFNRFGFQQVQVDCQFLQAPLKEAVEDEA--AVDFLLDEVIVSASE 616 (636)
T ss_pred hhhceeeecchhhhHHHHHHHHHHHHHH--HHHHhhcccceeeeehhHHHHHHHHHHHhchHH--HHHHHHHHHHHHHHH
Confidence 12356778888899999986 478899999999999999999999999997764 577789999999988
Q ss_pred HHHhhh
Q 001488 948 SVAEAV 953 (1068)
Q Consensus 948 ~v~~~~ 953 (1068)
+--+-|
T Consensus 617 RC~Dpv 622 (636)
T KOG2346|consen 617 RCLDPV 622 (636)
T ss_pred cCCCCc
Confidence 765443
No 3
>PF15469 Sec5: Exocyst complex component Sec5
Probab=100.00 E-value=5.8e-38 Score=326.34 Aligned_cols=179 Identities=42% Similarity=0.720 Sum_probs=171.0
Q ss_pred hHHHHHHHHhhhhhhHhhhhhHHHHHHHhhhhcCC-CCCCCchhHHhhHHHHHHHHHhhhhhHHHhHHHHHHHHHHHHHH
Q 001488 239 TQQRKQLVKDNFDCFVSCKTTIDDIESKLKRIEED-PEGSGTAHLFKLMQGVSSQANRAFEPLFERQAQAEKIRSVQGML 317 (1068)
Q Consensus 239 ~~~LK~LV~eNf~kFI~akdTId~m~~~~k~~e~~-~~~~~t~~L~~~L~~i~~~a~~i~~pLler~~KaekLr~vl~~L 317 (1068)
+++||.||++||++||+||+|||+||.+|+.++.. ..+.++..|.+.|.++...++.+|.|+++++++++++++++++|
T Consensus 1 s~~lk~LV~~Nf~~Fv~~k~tid~i~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~pll~~~~k~~~l~~~l~~l 80 (182)
T PF15469_consen 1 SEDLKSLVKENFDKFVSCKDTIDDIYEEFRNMKTEAQQDSGTEKLEESLNEASSKANSVFKPLLERREKADKLRNALEFL 80 (182)
T ss_pred CHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999986543 23467899999999999999999999999999999999999999
Q ss_pred HHHHHHhcCchhhHhhhhcCChHHHHHHHHHhhhhccCc--chhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhHHHH
Q 001488 318 QRFRTLFNLPSTIRGSISKGEFDLAVREYKKAKSIALPS--HVNILKRVLEEVEKVMQEFKAMLYKSMEDPHIDLTNLEN 395 (1068)
Q Consensus 318 ~R~kfLFeLP~~L~~~I~~gdYe~aV~dY~kAk~L~~~~--~v~vf~kV~~EVE~ii~~~k~~L~~~L~~~~~s~ee~~~ 395 (1068)
+|++|||+||++|++||++|+|++||++|.||++++..+ ++++|++||.|||++|++||+.||++|.+++.+.+++++
T Consensus 81 ~r~~flF~LP~~L~~~i~~~dy~~~i~dY~kak~l~~~~~~~~~vf~~v~~eve~ii~~~r~~l~~~L~~~~~s~~~~~~ 160 (182)
T PF15469_consen 81 QRNRFLFNLPSNLRECIKKGDYDQAINDYKKAKSLFEKYKQQVPVFQKVWSEVEKIIEEFREKLWEKLLSPPSSQEEFLK 160 (182)
T ss_pred HHHHHHHHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 999999999999999999999999999999999999887 999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCChHHHHHHHh
Q 001488 396 TVRLLLELEPESDPVWHYLNVQ 417 (1068)
Q Consensus 396 lI~lLleL~~~~dPiw~~L~sq 417 (1068)
+|++|++|++++||||.||.+|
T Consensus 161 ~i~~Ll~L~~~~dPi~~~l~~q 182 (182)
T PF15469_consen 161 LIRKLLELNVEEDPIWYWLESQ 182 (182)
T ss_pred HHHHHHhCCCCCCHHHHHHHcC
Confidence 9999999999999999999875
No 4
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=99.53 E-value=1.8e-11 Score=139.72 Aligned_cols=204 Identities=17% Similarity=0.279 Sum_probs=170.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhHhhhhhHHHHHHHhhhhcCCCCCCCchhHHhhHHHHHHHHHhh
Q 001488 217 QNTSSADLEAGALALKTDLKGRTQQRKQLVKDNFDCFVSCKTTIDDIESKLKRIEEDPEGSGTAHLFKLMQGVSSQANRA 296 (1068)
Q Consensus 217 ~~tS~~dL~~gl~~L~r~I~~~~~~LK~LV~eNf~kFI~akdTId~m~~~~k~~e~~~~~~~t~~L~~~L~~i~~~a~~i 296 (1068)
.+.++++|......|..++.....+++.|..+||..||.+++++..+..++...... +..|.+.+.++...+...
T Consensus 5 ~s~~l~~L~~Ep~~L~~~~~~l~~ql~~La~~~y~~fi~~~~~~~~i~~~~~~~~~~-----l~~L~~~l~~L~~~~~~f 79 (338)
T PF04124_consen 5 TSLSLESLFSEPQSLSEEIASLDAQLQSLAFRNYKTFIDNAECSSDIRQELSSLSDS-----LDSLLDSLPELDEACQRF 79 (338)
T ss_pred ccCCHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH
Confidence 367899999999999999999999999999999999999999999999998865432 334677777766665553
Q ss_pred hhhHHHhHHHHHHHHHHHHHHHHHHHHhcCchhhHhhhhcCChHHHHHHHHHhhhhcc-CcchhhHHHHHHHHHHHHHHH
Q 001488 297 FEPLFERQAQAEKIRSVQGMLQRFRTLFNLPSTIRGSISKGEFDLAVREYKKAKSIAL-PSHVNILKRVLEEVEKVMQEF 375 (1068)
Q Consensus 297 ~~pLler~~KaekLr~vl~~L~R~kfLFeLP~~L~~~I~~gdYe~aV~dY~kAk~L~~-~~~v~vf~kV~~EVE~ii~~~ 375 (1068)
-....+..++-.....++.-..+...+++||..|..||.+|.|++|++-+..+++|.. +.+++++++|+.+|+..+..+
T Consensus 80 ~~~~~~~~~~r~~~~~~l~~~~~l~diLElP~Lm~~ci~~g~y~eALel~~~~~~L~~~~~~~~lv~~i~~ev~~~~~~m 159 (338)
T PF04124_consen 80 SSKAQKISEERKKASLLLENHDRLLDILELPQLMDTCIRNGNYSEALELSAHVRRLQSRFPNIPLVKSIAQEVEAALQQM 159 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcccHhhHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHH
Confidence 3333333333444556666777889999999999999999999999999999999874 567999999999999999999
Q ss_pred HHHHHHhhcCCCCChhHHHHHHHHHhcCCC--CCChHHHHHHHhHHHHHHHHH
Q 001488 376 KAMLYKSMEDPHIDLTNLENTVRLLLELEP--ESDPVWHYLNVQNHRIRGLFE 426 (1068)
Q Consensus 376 k~~L~~~L~~~~~s~ee~~~lI~lLleL~~--~~dPiw~~L~sq~~~I~~~le 426 (1068)
...|..+|..+ .....+.++|.+|..++. +......||.++..|+.+.+.
T Consensus 160 l~~Li~~L~~~-l~l~~~ik~v~~Lrrl~~~~e~~Lr~~fl~~r~~~l~~~l~ 211 (338)
T PF04124_consen 160 LSQLINQLRTP-LKLPACIKTVGYLRRLPVLTESELRLKFLQSRDSWLQSVLE 211 (338)
T ss_pred HHHHHHHHcCc-ccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhhhHH
Confidence 99999999888 889999999999999965 334678999998888888554
No 5
>KOG2069 consensus Golgi transport complex subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.04 E-value=1.1e-08 Score=120.06 Aligned_cols=213 Identities=16% Similarity=0.261 Sum_probs=168.2
Q ss_pred CCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhHhhhhhHHHHHHHhhhhcCCCCCCCchhH
Q 001488 203 SDSFNAKLFLSRVHQNTSSADLEAGALALKTDLKGRTQQRKQLVKDNFDCFVSCKTTIDDIESKLKRIEEDPEGSGTAHL 282 (1068)
Q Consensus 203 S~~FdP~~FLs~vH~~tS~~dL~~gl~~L~r~I~~~~~~LK~LV~eNf~kFI~akdTId~m~~~~k~~e~~~~~~~t~~L 282 (1068)
++.| ..|+.++. .+.+++|.+.-..|..++...+.+++.|...||..||.+...+++++.++..++.+..+ |
T Consensus 18 ~~~~--~~~v~~l~-~~~~e~l~ke~~~La~e~~~i~~q~q~La~~ny~t~id~A~~~~~i~~~~~~~~~~~~~-----l 89 (581)
T KOG2069|consen 18 SPEM--DAYVRELT-TKPLEELRKEKALLAEEAAKIDAQTQDLARDNYKTLIDTARNTDAIYQLFGRSRHDLKE-----L 89 (581)
T ss_pred Cchh--HHHHHHHc-CCcHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHH-----H
Confidence 7777 67999988 78899999999999999999999999999999999999999999999999987664322 3
Q ss_pred HhhHHHHHHHHHhhhhhHHHhHHHHHHH----HHHHHHHHHHHHHhcCchhhHhhhhcCChHHHHHHHHHhhhhcc-Ccc
Q 001488 283 FKLMQGVSSQANRAFEPLFERQAQAEKI----RSVQGMLQRFRTLFNLPSTIRGSISKGEFDLAVREYKKAKSIAL-PSH 357 (1068)
Q Consensus 283 ~~~L~~i~~~a~~i~~pLler~~KaekL----r~vl~~L~R~kfLFeLP~~L~~~I~~gdYe~aV~dY~kAk~L~~-~~~ 357 (1068)
.-.+....+.+++ ..+....+... +.++........+.+||..|.+||+.|.|+++.+--+.+.+|.. .+.
T Consensus 90 ~l~~~~L~s~~~~----f~~~~~~i~e~~~~~~~~l~~~~~l~ellelp~lM~~cir~~~~~ealel~a~~~RL~~~~~~ 165 (581)
T KOG2069|consen 90 SLQLPELTSPCKR----FQDFAEEISEHRRLNSLTLDKHPQLLELLELPQLMDRCIRNGYYDEALELAAYASRLKQRFGT 165 (581)
T ss_pred HHhhHHhhhHHHH----HHHHHHHhhHhHHHHHHHHhhcchhHHHHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhccc
Confidence 3333443333333 22222222222 23333444458899999999999999999999999888888865 355
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHhcCCC--CCChHHHHHHHhHHHHHHHHHHH
Q 001488 358 VNILKRVLEEVEKVMQEFKAMLYKSMEDPHIDLTNLENTVRLLLELEP--ESDPVWHYLNVQNHRIRGLFEKC 428 (1068)
Q Consensus 358 v~vf~kV~~EVE~ii~~~k~~L~~~L~~~~~s~ee~~~lI~lLleL~~--~~dPiw~~L~sq~~~I~~~le~~ 428 (1068)
++++++|..+|+..+..+-.+|..+|+.+ ....++.+.|.||..+.+ .......||.++..|+.+.++..
T Consensus 166 ~pvi~~i~~~v~~tv~~ll~qL~~~l~~p-l~l~~cirvv~ylr~~~~~t~~~LRl~fl~~rd~~l~k~l~~I 237 (581)
T KOG2069|consen 166 IPVIQEIATEVEQTVQKLLEQLIQQLRTP-LQLPECIRVVGYLRRMAVLTENQLRLKFLQARDAWLEKILEDI 237 (581)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhc
Confidence 79999999999999999999999999987 567889999999977754 23377788888888888876654
No 6
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=98.86 E-value=5.2e-09 Score=96.47 Aligned_cols=71 Identities=17% Similarity=0.424 Sum_probs=67.8
Q ss_pred CCCCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhHhhhhhHHHHHHHhhhhc
Q 001488 201 YFSDSFNAKLFLSRVHQNTSSADLEAGALALKTDLKGRTQQRKQLVKDNFDCFVSCKTTIDDIESKLKRIE 271 (1068)
Q Consensus 201 isS~~FdP~~FLs~vH~~tS~~dL~~gl~~L~r~I~~~~~~LK~LV~eNf~kFI~akdTId~m~~~~k~~e 271 (1068)
+++++|||+.|+....++.|+.++.+-...|..+|+..+++||.+||+||..||.|.++|..|..++..+.
T Consensus 1 ~~~~~fd~~~~~~~~l~~~s~~~i~~~~~~L~~~i~~~~~eLr~~V~~nY~~fI~as~~I~~m~~~~~~l~ 71 (87)
T PF08700_consen 1 FDSENFDVDEYFKDLLKNSSIKEIRQLENKLRQEIEEKDEELRKLVYENYRDFIEASDEISSMENDLSELR 71 (87)
T ss_pred CCCCcCCHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999987643
No 7
>KOG2033 consensus Low density lipoprotein B-like protein [Lipid transport and metabolism]
Probab=98.56 E-value=0.0059 Score=73.79 Aligned_cols=199 Identities=15% Similarity=0.195 Sum_probs=146.8
Q ss_pred HhcCCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhHhhhhhHHHHHHHhhhhcCCCCCCCchhHHhhHHHHHHHH
Q 001488 214 RVHQNTSSADLEAGALALKTDLKGRTQQRKQLVKDNFDCFVSCKTTIDDIESKLKRIEEDPEGSGTAHLFKLMQGVSSQA 293 (1068)
Q Consensus 214 ~vH~~tS~~dL~~gl~~L~r~I~~~~~~LK~LV~eNf~kFI~akdTId~m~~~~k~~e~~~~~~~t~~L~~~L~~i~~~a 293 (1068)
.+..+-|.+++..-...++..|+.+.++|.++|-+-|--.|.|.|||..|.+--.. |.+.|.++...+
T Consensus 12 ~LFethsvsEIr~ve~~ir~~iE~KrEELRqmVGeRYRDLleAADtI~hM~sla~~------------L~~~I~~t~~nc 79 (863)
T KOG2033|consen 12 TLFETHSVSEIREVEKKIRSVIEGKREELRQMVGERYRDLLEAADTIRHMCSLADK------------LASDIANTRVNC 79 (863)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHhhhh
Confidence 34456689999999999999999999999999999999999999999999865432 445555544444
Q ss_pred Hhhh------hhHHHhHHHHHHHHHHHHHHHHHHHHhcCchhhHhhhhcCChHHHHHHHHHhhhhcc-----C------c
Q 001488 294 NRAF------EPLFERQAQAEKIRSVQGMLQRFRTLFNLPSTIRGSISKGEFDLAVREYKKAKSIAL-----P------S 356 (1068)
Q Consensus 294 ~~i~------~pLler~~KaekLr~vl~~L~R~kfLFeLP~~L~~~I~~gdYe~aV~dY~kAk~L~~-----~------~ 356 (1068)
..+. .|=+..+. -...+..++.-+.|.|.++|..|-.|+..+.+=.|..-|..++.+-. + .
T Consensus 80 rsL~a~svA~tp~raeqn--p~~e~~Yg~aaqVKyLv~~PE~IWg~lD~s~fl~At~ly~~~~Hlq~~liqLdsss~ll~ 157 (863)
T KOG2033|consen 80 RSLHANSVAKTPGRAEQN--PAGEHLYGTAAQVKYLVSSPELIWGHLDSSEFLDATVLYCMVEHLQKQLIQLDSSSMLLK 157 (863)
T ss_pred hhcccccccCCcchhhcC--chhhHHHHHHHHHHHHHhCHHHhhccccccchHHHHHHHHHHHHHHHHHhhcCCCcHHHh
Confidence 4333 22111111 24456677888999999999999999999999999999999887532 1 4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHhcCCCCCCh---HHHHHHHhHHHHHHHHHH
Q 001488 357 HVNILKRVLEEVEKVMQEFKAMLYKSMEDPHIDLTNLENTVRLLLELEPESDP---VWHYLNVQNHRIRGLFEK 427 (1068)
Q Consensus 357 ~v~vf~kV~~EVE~ii~~~k~~L~~~L~~~~~s~ee~~~lI~lLleL~~~~dP---iw~~L~sq~~~I~~~le~ 427 (1068)
+.|++.+=|.-++---.++.......|.+...+..-..+++.-+.=|+ +.|| .-.||.+++.||...++.
T Consensus 158 nfP~l~~Qw~a~r~F~stI~q~s~~~Lld~glsd~atvdaL~aiaLLd-esdpsqvLelFL~~Rk~~il~lLn~ 230 (863)
T KOG2033|consen 158 NFPALTNQWVATRPFHSTIEQQSCSTLLDIGLSDWATVDALAAIALLD-ESDPSQVLELFLEKRKEHILHLLND 230 (863)
T ss_pred hcHHHHHHHHHHhhHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 578888888888766677777778888888766544443333222221 2344 458999999999999984
No 8
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=98.27 E-value=0.00027 Score=79.73 Aligned_cols=197 Identities=9% Similarity=0.164 Sum_probs=154.1
Q ss_pred CCCCCHHHHHHHhcCC--CCHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhHhhhhhHHHHHHHhhhhcCCCCCCCch
Q 001488 203 SDSFNAKLFLSRVHQN--TSSADLEAGALALKTDLKGRTQQRKQLVKDNFDCFVSCKTTIDDIESKLKRIEEDPEGSGTA 280 (1068)
Q Consensus 203 S~~FdP~~FLs~vH~~--tS~~dL~~gl~~L~r~I~~~~~~LK~LV~eNf~kFI~akdTId~m~~~~k~~e~~~~~~~t~ 280 (1068)
.++|||..|..+..+. .+.+++.+....|+...+.-+..+-..|-.|++.|+.+-..++.+..++...-.. ..
T Consensus 10 ~~~FD~~~~~L~~l~~~~~~~~~i~~~~ekLs~~ldvVe~~L~~~I~~~s~~f~~a~~~v~el~~~l~~a~~~-----~~ 84 (291)
T PF10475_consen 10 DEDFDPVRYELEKLPEDELDLEDIEELQEKLSHYLDVVEKKLSREISEKSDSFFQAMSSVQELQDELEEALVI-----CK 84 (291)
T ss_pred CCCCCchHHHHHhCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HH
Confidence 4599999986555544 4788888889999999999999999999999999999999999999999864221 22
Q ss_pred hHHhhHHHHHHHHHhhhhhHHHhHHHHHHHHHHHHHHHHHHHHhcCchhhHhhhhcCChHHHHHHHHHhhhhcc-Ccchh
Q 001488 281 HLFKLMQGVSSQANRAFEPLFERQAQAEKIRSVQGMLQRFRTLFNLPSTIRGSISKGEFDLAVREYKKAKSIAL-PSHVN 359 (1068)
Q Consensus 281 ~L~~~L~~i~~~a~~i~~pLler~~KaekLr~vl~~L~R~kfLFeLP~~L~~~I~~gdYe~aV~dY~kAk~L~~-~~~v~ 359 (1068)
.+...|..+......---.++....|-+++..++..|+..+.+.+.=..|+..+..|||..|++.+...+.+.. ..+..
T Consensus 85 ~~R~~L~~~~~~~~~~~L~Il~~~rkr~~l~~ll~~L~~i~~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l~~l~~~~ 164 (291)
T PF10475_consen 85 NLRRNLKSADENLTKSGLEILRLQRKRQNLKKLLEKLEQIKTVQQTQSRLQELLEEGDYPGALDLIEECQQLLEELKGYS 164 (291)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcccch
Confidence 35555555543322223346677888889999999999999999999999999999999999999999988654 46788
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCC--CCChhHHHHHHHHHhcCC
Q 001488 360 ILKRVLEEVEKVMQEFKAMLYKSMEDP--HIDLTNLENTVRLLLELE 404 (1068)
Q Consensus 360 vf~kV~~EVE~ii~~~k~~L~~~L~~~--~~s~ee~~~lI~lLleL~ 404 (1068)
.|+.+-..++.....+.+.|-..|... ..+.+.+.+++..-.-||
T Consensus 165 c~~~L~~~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLg 211 (291)
T PF10475_consen 165 CVRHLSSQLQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLG 211 (291)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 888888888888888887777777665 344566667666543344
No 9
>KOG2176 consensus Exocyst complex, subunit SEC15 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.11 E-value=0.067 Score=66.38 Aligned_cols=130 Identities=12% Similarity=0.182 Sum_probs=95.3
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhHhhhhhHHHHHHHhhhhcCCCCCCCchhHHhhHHHHH
Q 001488 211 FLSRVHQNTSSADLEAGALALKTDLKGRTQQRKQLVKDNFDCFVSCKTTIDDIESKLKRIEEDPEGSGTAHLFKLMQGVS 290 (1068)
Q Consensus 211 FLs~vH~~tS~~dL~~gl~~L~r~I~~~~~~LK~LV~eNf~kFI~akdTId~m~~~~k~~e~~~~~~~t~~L~~~L~~i~ 290 (1068)
||..+.-.- +...-.+.|+..|+.++.++..|-..||.-||.+-+-+.+|.++.++....+.+ +...++.+.
T Consensus 36 ~lRs~~d~~---~~~~~~e~Le~~ir~~d~EIE~lcn~hyQdFidsIdEL~~Vr~daq~Lks~vsd-----~N~rLQ~~g 107 (800)
T KOG2176|consen 36 TLRSVYDGN---QHKPVMEKLENRIRNHDKEIEKLCNFHYQDFIDSIDELLKVRGDAQKLKSQVSD-----TNRRLQESG 107 (800)
T ss_pred HHHHHHccC---CcchHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhh-----hhhHHHHHH
Confidence 444444333 444556778888899999999999999999999999999999998876554433 333343332
Q ss_pred HHHHhhhhhHHHhHHHHHHHHHHHHHHHHHHHHhcCchhhHhhhhcCChHHHHHHHHH
Q 001488 291 SQANRAFEPLFERQAQAEKIRSVQGMLQRFRTLFNLPSTIRGSISKGEFDLAVREYKK 348 (1068)
Q Consensus 291 ~~a~~i~~pLler~~KaekLr~vl~~L~R~kfLFeLP~~L~~~I~~gdYe~aV~dY~k 348 (1068)
..=-.....+...+..-.++..+++.++..--++++=+++++.+++|.|=.|++.-..
T Consensus 108 ~eLiv~~e~lv~~r~~~rnit~ai~~l~~Cl~vLEl~sK~~e~~s~kqyy~aLktle~ 165 (800)
T KOG2176|consen 108 KELIVKKEDLVRCRTQSRNITEAIELLTLCLPVLELYSKLQEQMSEKQYYPALKTLES 165 (800)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 2212233446677777778889999999999999999999999999999777665443
No 10
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=97.79 E-value=0.0042 Score=72.83 Aligned_cols=166 Identities=11% Similarity=0.260 Sum_probs=123.3
Q ss_pred CCCCHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHhhhHHHHHHHHhhh-------hhhHhhhhhHHHHHHHhhhhcCCCC
Q 001488 204 DSFNAKLFLSRVHQN-TSSADLEAGALALKTDLKGRTQQRKQLVKDNF-------DCFVSCKTTIDDIESKLKRIEEDPE 275 (1068)
Q Consensus 204 ~~FdP~~FLs~vH~~-tS~~dL~~gl~~L~r~I~~~~~~LK~LV~eNf-------~kFI~akdTId~m~~~~k~~e~~~~ 275 (1068)
++|||-.||.++.++ .|+.+|-.-+..|...|..++.++..+|.+-- ..+-.++..|.++..++.......+
T Consensus 2 ~dfdpv~~in~lfp~e~SL~~ld~~i~~l~~~i~~ld~eI~~~v~~q~~~~~~~~~~l~~a~~~i~~L~~~i~~ik~kA~ 81 (383)
T PF04100_consen 2 PDFDPVDYINELFPDEQSLSNLDELIAKLRKEIRELDEEIKELVREQSSSGQDAEEDLEEAQEAIQELFEKISEIKSKAE 81 (383)
T ss_pred CCCCHHHHHHHhCCChHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999975 67899999999999999999999999998765 2344555555555555554322110
Q ss_pred C--CCchhHHhhHHHHHHHHHhhhhhHHHhHHHHHHHHHHHHHHHHHHHHhcCchhhHhhhhcCChHHHHHHHHHhhhhc
Q 001488 276 G--SGTAHLFKLMQGVSSQANRAFEPLFERQAQAEKIRSVQGMLQRFRTLFNLPSTIRGSISKGEFDLAVREYKKAKSIA 353 (1068)
Q Consensus 276 ~--~~t~~L~~~L~~i~~~a~~i~~pLler~~KaekLr~vl~~L~R~kfLFeLP~~L~~~I~~gdYe~aV~dY~kAk~L~ 353 (1068)
. ..+..+...|.. |+... .+|-.++.+|+|++-|.+-=..|...+++++|.++..-+.-++.|.
T Consensus 82 ~sE~~V~~it~dIk~------------LD~AK--rNLT~SIT~LkrL~MLv~a~~qL~~~~~~r~Y~e~a~~L~av~~L~ 147 (383)
T PF04100_consen 82 ESEQMVQEITRDIKQ------------LDNAK--RNLTQSITTLKRLQMLVTAVEQLKELAKKRQYKEIASLLQAVKELL 147 (383)
T ss_pred HHHHHHHHHHHHHHH------------HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 0 001111111111 12222 2567788899999999999999999999999999999999999875
Q ss_pred ----cCcchhhHHHHHHHHHHHHHHHHHHHHHhh
Q 001488 354 ----LPSHVNILKRVLEEVEKVMQEFKAMLYKSM 383 (1068)
Q Consensus 354 ----~~~~v~vf~kV~~EVE~ii~~~k~~L~~~L 383 (1068)
.|..++-+..++..|+.+-..++.++..-+
T Consensus 148 ~~F~~yksi~~I~~L~~~i~~l~~~L~~qI~~df 181 (383)
T PF04100_consen 148 EHFKPYKSIPQIAELSKRIDQLQNELKEQIFEDF 181 (383)
T ss_pred HHHHcccCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999998888887777654
No 11
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=97.68 E-value=0.31 Score=60.51 Aligned_cols=161 Identities=14% Similarity=0.220 Sum_probs=109.0
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhHhhhhhHHHHHHHhhhhcCCCCCC----CchhHHhhHHHHHHHH
Q 001488 218 NTSSADLEAGALALKTDLKGRTQQRKQLVKDNFDCFVSCKTTIDDIESKLKRIEEDPEGS----GTAHLFKLMQGVSSQA 293 (1068)
Q Consensus 218 ~tS~~dL~~gl~~L~r~I~~~~~~LK~LV~eNf~kFI~akdTId~m~~~~k~~e~~~~~~----~t~~L~~~L~~i~~~a 293 (1068)
.-+.++|......|.+.|....++.+..|.+||..|+....+.+.+..+.+....+.++. ....+...+..+
T Consensus 6 ~l~~edl~~~I~~L~~~i~~~k~eV~~~I~~~y~df~~~~~~~~~L~~~~~~l~~eI~d~l~~~~~~~i~~~l~~a---- 81 (593)
T PF06248_consen 6 PLSKEDLRKSISRLSRRIEELKEEVHSMINKKYSDFSPSLQSAKDLIERSKSLAREINDLLQSEIENEIQPQLRDA---- 81 (593)
T ss_pred CCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHH----
Confidence 346789999999999999999999999999999999988888877776665532221000 000111111111
Q ss_pred HhhhhhHHHhHHHHHHHHHHHHHHHHHHHHhcCchhhHhhhhcCChHHHHHHHHHhhhhccC------cchhhHHHHHHH
Q 001488 294 NRAFEPLFERQAQAEKIRSVQGMLQRFRTLFNLPSTIRGSISKGEFDLAVREYKKAKSIALP------SHVNILKRVLEE 367 (1068)
Q Consensus 294 ~~i~~pLler~~KaekLr~vl~~L~R~kfLFeLP~~L~~~I~~gdYe~aV~dY~kAk~L~~~------~~v~vf~kV~~E 367 (1068)
...+..-+.++.....++.++++.+.+=++=..+...++.|+|-.|++.-.+++.++.. .+..+++-+-.+
T Consensus 82 ---~~e~~~L~~eL~~~~~~l~~L~~L~~i~~~l~~~~~al~~~~~~~Aa~~L~~~~~~L~~l~~~~~~~~~i~~~Lk~e 158 (593)
T PF06248_consen 82 ---AEELQELKRELEENEQLLEVLEQLQEIDELLEEVEEALKEGNYLDAADLLEELKSLLDDLKSSKFEELKILKLLKDE 158 (593)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCcCcccccHHHHHHHHH
Confidence 11233334445555555666666655555558888999999999999999999987642 245777777777
Q ss_pred HHHHHHHHHHHH---HHhhcC
Q 001488 368 VEKVMQEFKAML---YKSMED 385 (1068)
Q Consensus 368 VE~ii~~~k~~L---~~~L~~ 385 (1068)
....-+.+...| |+++..
T Consensus 159 ~~~lr~~L~~~L~~~w~~lv~ 179 (593)
T PF06248_consen 159 YSELRENLQYQLSEEWERLVQ 179 (593)
T ss_pred HHHHHHHHHHHHHHHHHhhee
Confidence 777777766666 666643
No 12
>KOG2307 consensus Low density lipoprotein receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.55 E-value=0.38 Score=57.81 Aligned_cols=193 Identities=16% Similarity=0.219 Sum_probs=111.8
Q ss_pred CCCCCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhHhhhhhHHHHHHHhhhhcCCCCCCCc
Q 001488 200 MYFSDSFNAKLFLSRVHQNTSSADLEAGALALKTDLKGRTQQRKQLVKDNFDCFVSCKTTIDDIESKLKRIEEDPEGSGT 279 (1068)
Q Consensus 200 disS~~FdP~~FLs~vH~~tS~~dL~~gl~~L~r~I~~~~~~LK~LV~eNf~kFI~akdTId~m~~~~k~~e~~~~~~~t 279 (1068)
.+.+++||.+.|++......++++|...| .-=.+.+..+|-.|+.+-|.-||+-...+-.|-..+..++++.+.
T Consensus 27 eFmkedFdve~f~s~~R~~v~letLrddL---rlylksl~~aMieLIN~DYADFVnLStnLVgld~aln~i~qpL~q--- 100 (705)
T KOG2307|consen 27 EFMKEDFDVERFMSLARQKVDLETLRDDL---RLYLKSLQNAMIELINDDYADFVNLSTNLVGLDDALNKIEQPLNQ--- 100 (705)
T ss_pred hhccccCCHHHHHHHHhccCCHHHHHHHH---HHHHHHHHHHHHHHHhhhHHHHHhhhhhhccHHHHHHHHHhHHHH---
Confidence 46689999999999999999999998754 455667788999999999999999988877777777766554321
Q ss_pred hhHHhhHHHHHHHHHhhhhhHHHhHHHHH----------HHHHHHHHHHHHHHHhcCchhhHhhhhcCChHHHHHHHHHh
Q 001488 280 AHLFKLMQGVSSQANRAFEPLFERQAQAE----------KIRSVQGMLQRFRTLFNLPSTIRGSISKGEFDLAVREYKKA 349 (1068)
Q Consensus 280 ~~L~~~L~~i~~~a~~i~~pLler~~Kae----------kLr~vl~~L~R~kfLFeLP~~L~~~I~~gdYe~aV~dY~kA 349 (1068)
|.+-|..+...-..-...+-++.++.. .+..++..++|...++.=|.+=...++.-..+.+--+.+++
T Consensus 101 --lreei~s~rgsV~ea~~alr~q~se~~~~Re~k~~lldl~~v~~~ieKL~k~L~s~psk~q~~~a~sLERiAlelnql 178 (705)
T KOG2307|consen 101 --LREEIKSTRGSVGEAERALRQQCSELCSNREKKIELLDLIYVLVAIEKLSKMLLSPPSKEQQDGATSLERIALELNQL 178 (705)
T ss_pred --HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccchHHHHHHHHHHH
Confidence 333333222111111111222222222 22344445555555554444434445555567777777777
Q ss_pred hhhccCcchhhHHHHHHHHHHHHHHHHHHHHHhhcCC-----CCChhHHHHHHHHHhcCC
Q 001488 350 KSIALPSHVNILKRVLEEVEKVMQEFKAMLYKSMEDP-----HIDLTNLENTVRLLLELE 404 (1068)
Q Consensus 350 k~L~~~~~v~vf~kV~~EVE~ii~~~k~~L~~~L~~~-----~~s~ee~~~lI~lLleL~ 404 (1068)
+....+. ++..+..++..|+..+..|.+.|.-. ....+.+.+|.+.-.-|+
T Consensus 179 kf~a~h~----k~~l~p~~e~ria~~~~~L~qsl~~lf~eglqsa~~~l~nclriYatld 234 (705)
T KOG2307|consen 179 KFHASHL----KGSLFPHSEERIAAEKIILSQSLAVLFAEGLQSAAGDLQNCLRIYATLD 234 (705)
T ss_pred HHHHHHh----hcccCcchhhHHhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHh
Confidence 7654321 22234445555555555554443211 223455555555544443
No 13
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=97.21 E-value=0.0026 Score=63.84 Aligned_cols=113 Identities=18% Similarity=0.309 Sum_probs=80.7
Q ss_pred CCCCCCHHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhHhhhhhHHHHHHHhhhhcCCCCC
Q 001488 202 FSDSFNAKLFLSRVHQ-----NTSSADLEAGALALKTDLKGRTQQRKQLVKDNFDCFVSCKTTIDDIESKLKRIEEDPEG 276 (1068)
Q Consensus 202 sS~~FdP~~FLs~vH~-----~tS~~dL~~gl~~L~r~I~~~~~~LK~LV~eNf~kFI~akdTId~m~~~~k~~e~~~~~ 276 (1068)
-+++|||..|-+.+.. +.+--++...+..|...|+..+..++.+|.+||..+++-...+..+..-+..+
T Consensus 4 l~~dFd~~~fan~ll~~~~~~~~~~ld~~~~l~kL~~~i~eld~~i~~~v~~~~~~LL~q~~~~~~~~~~l~~v------ 77 (132)
T PF10392_consen 4 LSPDFDPVQFANDLLKSTNNNSDSELDISTPLKKLNFDIQELDKRIRSQVTSNHEDLLSQASSIEELESVLQAV------ 77 (132)
T ss_pred CCCCCCHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHhHHHHHHHHHHH------
Confidence 3899999999999987 34456788889999999999999999999999999999999999888755543
Q ss_pred CCchhHHhhHHHHHHHHHhhhhhHHHhHHHH-------HHHHHHHHHHHHHHHHhcC
Q 001488 277 SGTAHLFKLMQGVSSQANRAFEPLFERQAQA-------EKIRSVQGMLQRFRTLFNL 326 (1068)
Q Consensus 277 ~~t~~L~~~L~~i~~~a~~i~~pLler~~Ka-------ekLr~vl~~L~R~kfLFeL 326 (1068)
...+..+....+.|-..+.+-.+++ .++..+..+|++.-.++.|
T Consensus 78 ------~~~v~~L~~s~~RL~~eV~~Py~~~~~~~~~L~rl~~t~~LLR~~~r~l~L 128 (132)
T PF10392_consen 78 ------RSSVESLQSSYERLRSEVIEPYEKIQKLTSQLERLHQTSDLLRSVSRFLQL 128 (132)
T ss_pred ------HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444 4444555555555444443
No 14
>PF04091 Sec15: Exocyst complex subunit Sec15-like ; InterPro: IPR007225 Sec15 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0000145 exocyst; PDB: 2A2F_X.
Probab=97.08 E-value=0.0025 Score=72.66 Aligned_cols=141 Identities=14% Similarity=0.229 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHHHhhhHhHHHHHHhhhhcCCCCCCCCCCCCccchHHHHHHHHHHHHHHHHhhcchh-hHHHHHHHHHH
Q 001488 804 FSGLEEKVLEQYTFAKANLIRTAATTFLLDSGVQWGAAPAVKGVRDVAVELLHTLVAVHAEVFAGAKP-LLDKTLGILVE 882 (1068)
Q Consensus 804 l~qLd~rLfe~Y~~~Ka~~L~~~I~~gil~~g~dW~~~~~P~~VRpYv~E~Ll~LV~VHAEV~tia~~-Lv~rvLs~Lve 882 (1068)
-+.-|.+||+ -++.|.+-+.++. .+||.+..+|++.++|+.+++..|-.+=+.+.+..|+ +-..+.-..+.
T Consensus 142 r~~Ae~~I~~-lv~~KIDe~lela-------~yDW~~~~~~~~ps~yi~dli~fL~~~f~s~l~~LP~~v~~~~~~~a~~ 213 (311)
T PF04091_consen 142 RKAAEKRIFE-LVNSKIDEFLELA-------EYDWTPTEPPGEPSDYINDLIQFLETTFSSTLTNLPPSVKQLVYFSACD 213 (311)
T ss_dssp TTHHHHHHHH-HHHHHHHHHHTT---------TT--------S--HHHHHHHHHHHHHHHTTTTTSH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHHHHHhhc-------ccceecCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4456667764 4777877766443 5899999999999999999999999999887776664 66667777888
Q ss_pred HHHHHHHHhhhhhccccccccCchhhHHHHhhHHHHHHhhccc-----CChhHHHHHHHHHHHHHHHHHhHHHhhhcC
Q 001488 883 GLIDTFLSLFDENQSNNLKSLDANGFCQLMLELDYFETILNPY-----FTHDARESLKNLQGVLLEKATVSVAEAVEN 955 (1068)
Q Consensus 883 ~vaeelL~~F~~~~~~~v~~fs~~G~lQAtLDIefl~qtLs~Y-----~T~~A~~~~~~l~~~~~~~a~e~v~~~~~~ 955 (1068)
.+++.++..+-. ..|++|+++|+.|..+||.|+++-...= ......+.|.+|+-.|==-..+.+.+-.|+
T Consensus 214 his~~l~~~Ll~---~~vk~in~~al~~~~~Dv~~lE~f~~~~~~~~~~~~~L~~~F~eLrQlvdLl~s~~~~~y~d~ 288 (311)
T PF04091_consen 214 HISESLLDLLLS---DDVKRINMNALQNFDLDVKYLESFADSLPVPGNNIPSLRETFAELRQLVDLLLSDDWEEYLDP 288 (311)
T ss_dssp HHHHHHHHHHT------------TTHHHHHHHHHHHHHHHTT-SSSS--SSTTGGGGHHHHHHHHHHH----------
T ss_pred HHHHHHHHHhcC---CcccccCHHHHHHHHHHHHHHHHHHHhCcCcccccccHHHHHHHHHHHHHHHhcCCHHHHhCc
Confidence 899999998853 2699999999999999999999988776 444455666555544332334455555444
No 15
>PF06148 COG2: COG (conserved oligomeric Golgi) complex component, COG2; InterPro: IPR024602 This entry represents the uncharacterised N-terminal domain of subunit 2 of the COG complex. The COG complex comprises eight proteins COG1-8 and plays critical roles in Golgi structure and function [].; PDB: 2JQQ_A.
Probab=96.52 E-value=0.0031 Score=63.15 Aligned_cols=68 Identities=21% Similarity=0.359 Sum_probs=0.4
Q ss_pred CCCCCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhHhhhhhHHHHHHHhhhh
Q 001488 200 MYFSDSFNAKLFLSRVHQNTSSADLEAGALALKTDLKGRTQQRKQLVKDNFDCFVSCKTTIDDIESKLKRI 270 (1068)
Q Consensus 200 disS~~FdP~~FLs~vH~~tS~~dL~~gl~~L~r~I~~~~~~LK~LV~eNf~kFI~akdTId~m~~~~k~~ 270 (1068)
.+..++|||..||.+.++-.++++|...+..+.+. ++++|-.||.+||..||+--..+..+-..+..+
T Consensus 7 ~F~~~~Fd~d~Fl~~~~~~~~Le~L~~dL~~~~~~---L~~~Li~lIN~dY~dFv~Ls~~L~g~~~~i~~l 74 (133)
T PF06148_consen 7 EFTKPDFDVDEFLSSNRRYVSLEDLRKDLRSYSKE---LKNELIELINDDYADFVSLSTNLVGMDEKIEEL 74 (133)
T ss_dssp ----------------------------------------------------------------------H
T ss_pred ccCCCCCCHHHHHHHccCCCCHHHHHHHHHHHHHH---HHHHHHHHHHhhHHHHHHHHHHHccHHHHHHHH
Confidence 45679999999999999999999999987777655 568999999999999999888877766655543
No 16
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=96.03 E-value=7.5 Score=50.05 Aligned_cols=219 Identities=13% Similarity=0.208 Sum_probs=130.4
Q ss_pred CCCCCCCCHHHHHHHhcCCCCH----HHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhH----hhhhhHHHHHHHhhhhc
Q 001488 200 MYFSDSFNAKLFLSRVHQNTSS----ADLEAGALALKTDLKGRTQQRKQLVKDNFDCFV----SCKTTIDDIESKLKRIE 271 (1068)
Q Consensus 200 disS~~FdP~~FLs~vH~~tS~----~dL~~gl~~L~r~I~~~~~~LK~LV~eNf~kFI----~akdTId~m~~~~k~~e 271 (1068)
.+++++|||+.|++...+..+- ..+-+-+..|...++-..+++-.=|++.-..-+ ++.--|+.|..+.....
T Consensus 4 ~f~~~~FD~~~WIN~~~~~~~~~~~~~~~d~~ls~l~~kLql~~qe~~~~le~~~~q~l~~~Pr~~~ev~~l~~ea~~L~ 83 (766)
T PF10191_consen 4 AFSDDDFDVKAWINAALKSRSKDEALEKADAHLSSLVMKLQLYSQEVNASLEETSQQALQRVPRVLREVDRLRQEAASLQ 83 (766)
T ss_pred hhCcCCCCHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 3678999999999987755433 233334666666666666666666666666555 34444455555444433
Q ss_pred CCCCCCCchhHHhhHHHHHHHHHhhhhhHHHhHHHHHHHHHHHHHHHHHHHHhcCchhhHhhhhcCChHHHHHHHHHhhh
Q 001488 272 EDPEGSGTAHLFKLMQGVSSQANRAFEPLFERQAQAEKIRSVQGMLQRFRTLFNLPSTIRGSISKGEFDLAVREYKKAKS 351 (1068)
Q Consensus 272 ~~~~~~~t~~L~~~L~~i~~~a~~i~~pLler~~KaekLr~vl~~L~R~kfLFeLP~~L~~~I~~gdYe~aV~dY~kAk~ 351 (1068)
..|.. +.+.++.+...+......|.+-..=-.++..+...|+.-.-.-.|-..+...++.|||..+.+--...++
T Consensus 84 ~~~~~-----v~~~~~~~e~~t~~s~~~L~~ld~vK~rm~~a~~~L~EA~~w~~l~~~v~~~~~~~d~~~~a~~l~~m~~ 158 (766)
T PF10191_consen 84 EQMAS-----VQEEIKAVEQDTAQSMAQLAELDSVKSRMEAARETLQEADNWSTLSAEVDDLFESGDIAKIADRLAEMQR 158 (766)
T ss_pred HHHHH-----HHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 32221 2233333322222222222222111133444555566666666777888888999999988877777654
Q ss_pred -hccCcchhhHHHHHHHHHHHHHHHHHHHHHhhcCC------CCChhHHHHHHHHHhcCCCCCChHHHHHHHhHHHHHHH
Q 001488 352 -IALPSHVNILKRVLEEVEKVMQEFKAMLYKSMEDP------HIDLTNLENTVRLLLELEPESDPVWHYLNVQNHRIRGL 424 (1068)
Q Consensus 352 -L~~~~~v~vf~kV~~EVE~ii~~~k~~L~~~L~~~------~~s~ee~~~lI~lLleL~~~~dPiw~~L~sq~~~I~~~ 424 (1068)
|.--.++|- |.|-...++.++++|...+... ..+++.+..++.++..+|-.+...-+|-.+++..|...
T Consensus 159 sL~~l~~~pd----~~~r~~~le~l~nrLEa~vsp~Lv~al~~~~~~~~~~~~~if~~i~R~~~l~~~Y~~~r~~~l~~~ 234 (766)
T PF10191_consen 159 SLAVLQDVPD----YEERRQQLEALKNRLEALVSPQLVQALNSRDVDAAKEYVKIFSSIGREPQLEQYYCKCRKAPLQRL 234 (766)
T ss_pred HHHHHcCCCc----hhHHHHHHHHHHHHHHHHhhHHHHHHHHhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 322223443 3455566666666655443221 34578899999999999888888888888877777666
Q ss_pred HHH
Q 001488 425 FEK 427 (1068)
Q Consensus 425 le~ 427 (1068)
-..
T Consensus 235 W~~ 237 (766)
T PF10191_consen 235 WQE 237 (766)
T ss_pred HHH
Confidence 543
No 17
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=95.71 E-value=0.1 Score=53.13 Aligned_cols=125 Identities=17% Similarity=0.199 Sum_probs=95.0
Q ss_pred CCCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhHhhhhhHHHHHHHhhhhcCCCCCCCchh
Q 001488 202 FSDSFNAKLFLSRVHQNTSSADLEAGALALKTDLKGRTQQRKQLVKDNFDCFVSCKTTIDDIESKLKRIEEDPEGSGTAH 281 (1068)
Q Consensus 202 sS~~FdP~~FLs~vH~~tS~~dL~~gl~~L~r~I~~~~~~LK~LV~eNf~kFI~akdTId~m~~~~k~~e~~~~~~~t~~ 281 (1068)
-.++|+|-..-..+.-++|. .+.+....+.+.-+..+..|+.+|.+||..|=++-.+--.|...+...... +..
T Consensus 17 ~~~~~~pv~~al~~ld~ss~-g~~~~~~~f~~~~~~~~~~L~~vV~eh~q~Fn~sI~sy~~i~~~i~~sq~~-----i~~ 90 (142)
T PF04048_consen 17 LTDDFNPVELALSLLDDSSV-GRAHRYQEFEELKKRIEKALQEVVNEHYQGFNSSIGSYSQILSSISESQER-----IRE 90 (142)
T ss_pred hcCCCcHHHHHHHhcCCCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHH
Confidence 37899999999999977776 488888889999999999999999999999999999988888887754332 222
Q ss_pred HHhhHHHHHHHHHhhhhhHHHhHHHHHHHHHHHHHHHHHHHHhcCchhhHh
Q 001488 282 LFKLMQGVSSQANRAFEPLFERQAQAEKIRSVQGMLQRFRTLFNLPSTIRG 332 (1068)
Q Consensus 282 L~~~L~~i~~~a~~i~~pLler~~KaekLr~vl~~L~R~kfLFeLP~~L~~ 332 (1068)
+.+.|..+...=..-...|.+-..+..+.+.++.+|.....+-.+|..|..
T Consensus 91 lK~~L~~ak~~L~~~~~eL~~L~~~s~~~~~mi~iL~~Ie~l~~vP~kie~ 141 (142)
T PF04048_consen 91 LKESLQEAKSLLGCRREELKELWQRSQEYKEMIEILDQIEELRQVPDKIES 141 (142)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhc
Confidence 444444433222222233555566667788999999999999999998864
No 18
>KOG3691 consensus Exocyst complex subunit Sec8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.22 E-value=0.35 Score=60.69 Aligned_cols=148 Identities=17% Similarity=0.165 Sum_probs=109.3
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhHhhhhhHHHHHHHhhhhcCCCCCCCchhHHhhHHHHHHHHHhhh
Q 001488 218 NTSSADLEAGALALKTDLKGRTQQRKQLVKDNFDCFVSCKTTIDDIESKLKRIEEDPEGSGTAHLFKLMQGVSSQANRAF 297 (1068)
Q Consensus 218 ~tS~~dL~~gl~~L~r~I~~~~~~LK~LV~eNf~kFI~akdTId~m~~~~k~~e~~~~~~~t~~L~~~L~~i~~~a~~i~ 297 (1068)
..+.+++...+..|..+-+.-+..++.||..++.-|-.|-.+-.+|-+.+.+-.+. +..+.+++......-+.=.
T Consensus 42 Se~~e~re~ek~~Led~Yk~~~a~Lq~lv~~H~q~~t~~i~sy~~i~s~It~~rer-----I~~vK~~L~~~k~ll~~~r 116 (982)
T KOG3691|consen 42 SEDTEPRETEKERLEDSYKEFGAALQELVHTHKQDFTTGISSYGEISSGITNCRER-----IHNVKNNLEACKELLNTRR 116 (982)
T ss_pred CCcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhcCH
Confidence 44556677788888888888899999999999999999999988888777653221 2235555555443333333
Q ss_pred hhHHHhHHHHHHHHHHHHHHHHHHHHhcCchhhHhhhhcCChHHHHHHHHHhhhhccC--cchhhHHHHHHHHHH
Q 001488 298 EPLFERQAQAEKIRSVQGMLQRFRTLFNLPSTIRGSISKGEFDLAVREYKKAKSIALP--SHVNILKRVLEEVEK 370 (1068)
Q Consensus 298 ~pLler~~KaekLr~vl~~L~R~kfLFeLP~~L~~~I~~gdYe~aV~dY~kAk~L~~~--~~v~vf~kV~~EVE~ 370 (1068)
..|.+-..+.-+.+.++++|.....+-.+|.++..+|.++.|-+|-..-.+|..+... ..|.++..+-.|.+.
T Consensus 117 deLqklw~~~~q~K~Vi~vL~eieEl~qvPqkie~~i~keqY~~Asdll~~~~~~lng~L~~VEgLs~l~~ele~ 191 (982)
T KOG3691|consen 117 DELQKLWAENSQYKKVIEVLKEIEELRQVPQKIETLIAKEQYLQASDLLTRAWELLNGPLDGVEGLSDLRSELEG 191 (982)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhHHHHHHHH
Confidence 4455556666777899999999999999999999999999999999999999887653 234444444444443
No 19
>KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.12 E-value=3.4 Score=51.38 Aligned_cols=173 Identities=12% Similarity=0.207 Sum_probs=124.7
Q ss_pred CCCCCCCHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhHhhhhhHHHHHHHhhhhcCCCCCCCc
Q 001488 201 YFSDSFNAKLFLSRVHQN-TSSADLEAGALALKTDLKGRTQQRKQLVKDNFDCFVSCKTTIDDIESKLKRIEEDPEGSGT 279 (1068)
Q Consensus 201 isS~~FdP~~FLs~vH~~-tS~~dL~~gl~~L~r~I~~~~~~LK~LV~eNf~kFI~akdTId~m~~~~k~~e~~~~~~~t 279 (1068)
+..+.|+.-.|+.++.++ .|+..+-.-...+..+|+..+..+...|..+=+.=-+.++.+++.-..+..
T Consensus 14 ~~t~~f~~v~~in~lfp~eqSL~~id~li~ki~~eir~~d~~l~~~Vr~q~N~g~~~~e~l~da~~ai~e---------- 83 (793)
T KOG2180|consen 14 IPTPEFNFVEYINELFPAEQSLTNIDSLIQKIQGEIRRVDKNLLAVVRTQENSGTRGKENLADAQAAIEE---------- 83 (793)
T ss_pred cCCcchhHHHHHHHhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHH----------
Confidence 334899999999999965 577777777778888999999999999998777666665555554444432
Q ss_pred hhHHhhHHHHHHHHHhhhhhHHHhHHHH-------HHHHHHHHHHHHHHHHhcCchhhHhhhhcCChHHHHHHHHHhhhh
Q 001488 280 AHLFKLMQGVSSQANRAFEPLFERQAQA-------EKIRSVQGMLQRFRTLFNLPSTIRGSISKGEFDLAVREYKKAKSI 352 (1068)
Q Consensus 280 ~~L~~~L~~i~~~a~~i~~pLler~~Ka-------ekLr~vl~~L~R~kfLFeLP~~L~~~I~~gdYe~aV~dY~kAk~L 352 (1068)
|...|.++.+.|++--.-+.+--..| .+|-.++.+|++..-|..==..|...+.++.|.++++-|.-.-.+
T Consensus 84 --L~~~i~eiks~ae~Te~~V~eiTrdIKqLD~AKkNLTtSiT~L~~L~MLv~~vesL~~l~~kr~y~e~a~~lqai~~l 161 (793)
T KOG2180|consen 84 --LFQKIQEIKSVAESTEAMVQEITRDIKQLDFAKKNLTTSITTLHRLHMLVTGVESLNALLSKRSYGEAASPLQAILQL 161 (793)
T ss_pred --HHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHhHHHHHHHH
Confidence 44445444444433222222222222 355678889999999988888899999999999999999988776
Q ss_pred c----cCcchhhHHHHHHHHHHHHHHHHHHHHHhhcC
Q 001488 353 A----LPSHVNILKRVLEEVEKVMQEFKAMLYKSMED 385 (1068)
Q Consensus 353 ~----~~~~v~vf~kV~~EVE~ii~~~k~~L~~~L~~ 385 (1068)
. .|..++-+...-.-++++=..+..++.+-+.+
T Consensus 162 l~~F~~Yk~v~~I~~Ls~si~~~k~~l~~qi~~df~~ 198 (793)
T KOG2180|consen 162 LNHFIAYKSVDEIANLSESIDKLKKSLLSQIFQDFKA 198 (793)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 46778888888887777777777777666644
No 20
>PF04437 RINT1_TIP1: RINT-1 / TIP-1 family; InterPro: IPR007528 This family includes RINT-1, a Rad50 interacting protein which participates in radiation induced checkpoint control [], that interacts with Rad50 only during late S and G2/M phases. RINT1 also functions in membrane trafficking from the endoplasmic reticulum(ER) to the Golgi complex in interphase cells [, , ]. In addition to this, the TIP-1 protein, which is involved in the retrograde transport from the Golgi to the ER []. They share a similar domain organisation with an N-terminal leucine heptad repeat rich coiled coil and an ~500-residue C-terminal RINT1/TIP20 domain, which might be a protein-protein interaction module necessary for the formation of functional complexes.; PDB: 3FHN_A.
Probab=94.55 E-value=0.48 Score=57.57 Aligned_cols=138 Identities=12% Similarity=0.137 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHhhhhcCCCCCCCCCC-----CCccchHHHHHHHHHHHHHHHHhh-cch
Q 001488 797 IQDLVMSFSGLEEKVLEQYTFAKANLIRTAATTFLLDSGVQWGAAPA-----VKGVRDVAVELLHTLVAVHAEVFA-GAK 870 (1068)
Q Consensus 797 i~~v~~~l~qLd~rLfe~Y~~~Ka~~L~~~I~~gil~~g~dW~~~~~-----P~~VRpYv~E~Ll~LV~VHAEV~t-ia~ 870 (1068)
.++++..+..|..+..+.++..=...+...++++.- .-.|...+. |..|.|-..++|..|-..=+-+.+ +++
T Consensus 300 Fde~i~~y~~l~~~~~~~iv~~v~~~~k~~lk~Y~k--~~~W~~~~~~~~~~~~~~S~el~~~L~~L~~~L~~L~~~L~~ 377 (494)
T PF04437_consen 300 FDETISAYEKLRKRMLESIVDRVVKEFKASLKAYFK--RSQWSSIESPSDSSPLSPSPELVPALSLLRSRLSFLERSLPP 377 (494)
T ss_dssp THHHHHHHHHHHTHHHHHHHHHHHHHHHHHTHHHHT----GGGT-------------GGGHHHHHHHHHHHHHHHTS--H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--ccCCCCcccccccccCCCCHHHHHHHHHHHHHHHHHHHHcCH
Confidence 445677788888899999998888888888877776 357877653 578999988888877665555544 555
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhccccccccCchhhHHHHhhHHHHHHhhcccCChhHHHHHHHHHHHHH
Q 001488 871 PLLDKTLGILVEGLIDTFLSLFDENQSNNLKSLDANGFCQLMLELDYFETILNPYFTHDARESLKNLQGVLL 942 (1068)
Q Consensus 871 ~Lv~rvLs~Lve~vaeelL~~F~~~~~~~v~~fs~~G~lQAtLDIefl~qtLs~Y~T~~A~~~~~~l~~~~~ 942 (1068)
.+..++-..|++.+..-+.+.+- ...+|+.+|..|...|+++|-.+++.|... ....|+.|.+.+.
T Consensus 378 ~~f~~i~r~ia~~l~~~l~~~Il-----~~n~Fs~~Ga~Ql~~D~~~L~~~~~~~~~~-p~~~f~~l~E~~~ 443 (494)
T PF04437_consen 378 ADFRRIWRRIASKLDDYLWESIL-----MSNKFSRAGAAQLQFDMRALFSVFSQYTPR-PEAFFKRLREACK 443 (494)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTT-----TTS-B-HHHHHHHHHHHHHHHTTS--TTSG-G-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh-----hcCeeChhHHHHHHHHHHHHHHHHHhhccC-HHHHHHHHHHHHH
Confidence 56777777777777777777443 355999999999999999999999998755 4577777776643
No 21
>PF06046 Sec6: Exocyst complex component Sec6; InterPro: IPR010326 Sec6 is a component of the multiprotein exocyst complex. Sec6 interacts with Sec8, Sec10 and Exo70.These exocyst proteins localise to regions of active exocytosis-at the growing ends of interphase cells and in the medial region of cells undergoing cytokinesis-in an F-actin-dependent and exocytosis- independent manner [].; PDB: 2FJI_2.
Probab=89.17 E-value=27 Score=43.21 Aligned_cols=84 Identities=7% Similarity=0.122 Sum_probs=65.9
Q ss_pred CCCCCCCCCCccchHHHHHHHHHHHHHHHHhh-cchhhHHHHHHHHHHHHHHHHHHhhhhhccccc-cccCchhhHHHHh
Q 001488 836 VQWGAAPAVKGVRDVAVELLHTLVAVHAEVFA-GAKPLLDKTLGILVEGLIDTFLSLFDENQSNNL-KSLDANGFCQLML 913 (1068)
Q Consensus 836 ~dW~~~~~P~~VRpYv~E~Ll~LV~VHAEV~t-ia~~Lv~rvLs~Lve~vaeelL~~F~~~~~~~v-~~fs~~G~lQAtL 913 (1068)
-.|... +.+..++.++--....... +.+++...++..+.+.+..+.++++.+++.+|= ..-...+.-|..-
T Consensus 391 ~~W~~~-------~~~~~I~~Ti~dY~~d~~~~l~~~~~~~l~~~~~~~~v~~Yl~~l~~kk~~~~~~~~~~~~a~~i~~ 463 (566)
T PF06046_consen 391 KKWYSG-------EAVDTICATIEDYLQDFQHYLRPPYFQELIEELHDRVVKEYLRALMKKKIKFKNKEERKEAAERIRR 463 (566)
T ss_dssp GGGCTS--------HHHHHHHHHHHHHHHHCCCS-HHHHHHHHHHHHHHHHHHHHHGGGG---------CCCCCHHHHHH
T ss_pred CcCcCc-------chHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHH
Confidence 379888 7888888888888888888 889999999999999999999999987543221 3346778899999
Q ss_pred hHHHHHHhhcccC
Q 001488 914 ELDYFETILNPYF 926 (1068)
Q Consensus 914 DIefl~qtLs~Y~ 926 (1068)
|++-|.+.+..|.
T Consensus 464 D~~~l~~~F~~~~ 476 (566)
T PF06046_consen 464 DAEQLKSFFSKLG 476 (566)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999998
No 22
>PF10474 DUF2451: Protein of unknown function C-terminus (DUF2451); InterPro: IPR019514 This protein is found in eukaryotes but its function is not known. The N-terminal domain of some members is PF10475 from PFAM (DUF2450).
Probab=79.94 E-value=29 Score=38.51 Aligned_cols=88 Identities=10% Similarity=0.149 Sum_probs=75.2
Q ss_pred CCCCCCCCCCCccchHHHHHHHHHHHHHHHH------hhcchhhHHHHHHHHHHHHHHHHHHhhhhhccccccccCchhh
Q 001488 835 GVQWGAAPAVKGVRDVAVELLHTLVAVHAEV------FAGAKPLLDKTLGILVEGLIDTFLSLFDENQSNNLKSLDANGF 908 (1068)
Q Consensus 835 g~dW~~~~~P~~VRpYv~E~Ll~LV~VHAEV------~tia~~Lv~rvLs~Lve~vaeelL~~F~~~~~~~v~~fs~~G~ 908 (1068)
...|+-.-.+.+-++||..++-.+-.....+ ..+.+++...+..+++.-+.+.|++.|. .|++=+.+|-
T Consensus 78 ~vKWdvkev~~qhs~YVd~l~~~~~~f~~rL~~i~~~~~i~~~~~~~lw~~~i~~~~~~Lveg~s-----~vkKCs~eGR 152 (234)
T PF10474_consen 78 NVKWDVKEVMSQHSSYVDQLVQEFQQFSERLDEISKQGPIPPEVQNVLWDRLIFFAFETLVEGYS-----RVKKCSNEGR 152 (234)
T ss_pred HcCCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH-----hccCCChhhH
Confidence 4689999889999999999999999988888 3445667777888888989999999997 5899999999
Q ss_pred HHHHhhHHHHHHhhcccCC
Q 001488 909 CQLMLELDYFETILNPYFT 927 (1068)
Q Consensus 909 lQAtLDIefl~qtLs~Y~T 927 (1068)
.+..||+.-|..-|..-+.
T Consensus 153 alM~lD~q~~~~~le~l~~ 171 (234)
T PF10474_consen 153 ALMQLDFQQLQNKLEKLSG 171 (234)
T ss_pred HHHHHHHHHHHHHHHHHcC
Confidence 9999999999988865543
No 23
>PF14923 CCDC142: Coiled-coil protein 142
Probab=71.18 E-value=55 Score=39.64 Aligned_cols=95 Identities=19% Similarity=0.299 Sum_probs=61.1
Q ss_pred cCCCCCCCCC---CCCccchHHHHHHHHHHHHHHHHhhcchh-----hHHHHHHHHHHHHHHHHHHhhhhhccccccccC
Q 001488 833 DSGVQWGAAP---AVKGVRDVAVELLHTLVAVHAEVFAGAKP-----LLDKTLGILVEGLIDTFLSLFDENQSNNLKSLD 904 (1068)
Q Consensus 833 ~~g~dW~~~~---~P~~VRpYv~E~Ll~LV~VHAEV~tia~~-----Lv~rvLs~Lve~vaeelL~~F~~~~~~~v~~fs 904 (1068)
-.|--|.-.. -|.....||-.++.+++.==-|....-++ .+..++..++|.-.+.++ .++ -|||
T Consensus 257 P~g~~WR~~~~~~lP~~pS~Yv~~~v~~vl~PVl~g~q~L~~~aq~~~l~~~l~a~~eAWLdhIl---~~k-----IKFS 328 (450)
T PF14923_consen 257 PSGRYWRRSLSPELPSAPSEYVEYVVETVLEPVLQGVQGLPPEAQIPALSQALTAMLEAWLDHIL---MHK-----IKFS 328 (450)
T ss_pred CCcchhcccCCCCCCCCccHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHH---Hcc-----ceee
Confidence 3455787764 37799999999888876533222221111 244444555444444443 222 3899
Q ss_pred chhhHHHHhhHHHHHHhhcc--c-CChhHHHHHH
Q 001488 905 ANGFCQLMLELDYFETILNP--Y-FTHDARESLK 935 (1068)
Q Consensus 905 ~~G~lQAtLDIefl~qtLs~--Y-~T~~A~~~~~ 935 (1068)
..|++|++.|..++++-|.. | .++++++.+.
T Consensus 329 ~~GAlQL~~DF~~Vr~wl~~e~~~Ls~e~rq~Ll 362 (450)
T PF14923_consen 329 LQGALQLRQDFGYVRDWLESECSGLSPELRQTLL 362 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCHHHHHHHh
Confidence 99999999999999999887 5 6666655443
No 24
>KOG4424 consensus Predicted Rho/Rac guanine nucleotide exchange factor/faciogenital dysplasia protein 3 [Signal transduction mechanisms]
Probab=66.02 E-value=71 Score=39.57 Aligned_cols=143 Identities=20% Similarity=0.294 Sum_probs=84.2
Q ss_pred hHHhhHHHHHHHHHhhhhhHHHhHHHHHHHHHHHHHHHHHHHHhcCchhhHhhhhcCChHHHHHHHHHhhhhccC--cch
Q 001488 281 HLFKLMQGVSSQANRAFEPLFERQAQAEKIRSVQGMLQRFRTLFNLPSTIRGSISKGEFDLAVREYKKAKSIALP--SHV 358 (1068)
Q Consensus 281 ~L~~~L~~i~~~a~~i~~pLler~~KaekLr~vl~~L~R~kfLFeLP~~L~~~I~~gdYe~aV~dY~kAk~L~~~--~~v 358 (1068)
.|-.+|..+...-...+-|.+..+- +-.+++|+--||.+ |.+-++.|.+|-.|+.. ...
T Consensus 109 ~lf~nIssi~~fh~qfllp~l~~r~-------Iadv~qKlAPFLKm------------YseY~knydrA~~L~~~lt~rs 169 (623)
T KOG4424|consen 109 GLFGNISSIHNFHGQFLLPELEKRI-------IADVFQKLAPFLKM------------YSEYAKNYDRALKLFQTLTSRS 169 (623)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHhhH-------HHHHHHHhhhHHHH------------HHHHHhcchhHHHHHHHHHhhC
Confidence 3445555555555455555555544 55678888888765 88899999999998875 345
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhHHHHHHH-HHhcCCCCCChHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 001488 359 NILKRVLEEVEKVMQEFKAMLYKSMEDPHIDLTNLENTVR-LLLELEPESDPVWHYLNVQNHRIRGLFEKCTLDHEARME 437 (1068)
Q Consensus 359 ~vf~kV~~EVE~ii~~~k~~L~~~L~~~~~s~ee~~~lI~-lLleL~~~~dPiw~~L~sq~~~I~~~le~~~~~~~~r~e 437 (1068)
+.|++|.+++++.-.-=.-.|..-|..|---+.-++=++. ||+.| +++||=|.=+...-.-|...-. .......++|
T Consensus 170 p~F~~vl~~Iek~~~cg~l~LqhhMiePVQRIPRYeLLLk~yl~~l-p~~d~D~~d~~ksLe~I~~aA~-HsNaai~k~E 247 (623)
T KOG4424|consen 170 PQFRKVVEEIEKQPECGGLKLQHHMIEPVQRVPRYELLLQDYLLYL-PPDDPDYKDLKKSLELISTAAS-HSNAAITKME 247 (623)
T ss_pred hHHHHHHHHHhhchhcCCccchhheechhhhhhHHHHHHHHHHHhC-CCCCcchHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 9999999999987655555666666665322333333333 33343 5566666555433333322221 2223344556
Q ss_pred HHHHHHH
Q 001488 438 TLHNELH 444 (1068)
Q Consensus 438 ~l~~~l~ 444 (1068)
.+++-+.
T Consensus 248 ~~~kLle 254 (623)
T KOG4424|consen 248 RLQKLLE 254 (623)
T ss_pred HHHHHHH
Confidence 6654443
No 25
>PF04129 Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 Vps52 complexes with Vps53 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=63.51 E-value=3.2e+02 Score=33.75 Aligned_cols=155 Identities=15% Similarity=0.222 Sum_probs=81.8
Q ss_pred HHhhHHHHHHHHHhhhhhHHHhHHHHHHHHHHHHHHHHHHHHhcCchhhHhhhhcCChHH-----HHHHHHHhhhhcc--
Q 001488 282 LFKLMQGVSSQANRAFEPLFERQAQAEKIRSVQGMLQRFRTLFNLPSTIRGSISKGEFDL-----AVREYKKAKSIAL-- 354 (1068)
Q Consensus 282 L~~~L~~i~~~a~~i~~pLler~~KaekLr~vl~~L~R~kfLFeLP~~L~~~I~~gdYe~-----aV~dY~kAk~L~~-- 354 (1068)
+..-|..+...+..+...|-.|+.-.++|...+ .=.-+|..|.+.|-.|+-+. ++..+.|-.....
T Consensus 47 iS~eI~~LQ~~S~~l~~~L~Nrk~~~~~L~~~i-------~~i~ipP~lI~~I~~~~v~e~~~~~~~~~~~k~~~~~~~~ 119 (508)
T PF04129_consen 47 ISSEIRSLQERSSSLNVKLKNRKAVEEKLSPFI-------DDIVIPPDLIRSICEGPVNEQYIEELLELLKKKIFFSKDQ 119 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-------HHHcCCHHHHHhHhcCCCCHHHHHHHHHHHHHHHHHHhhc
Confidence 556666667777777766666666555555543 22349999999999998765 2333333222222
Q ss_pred -CcchhhHHHHHHHHH----HHHHHHHHHHHHh---hcCCCCChhHHHHHHHHHhcCCCCCChHHHHHHHhHHHHHHHHH
Q 001488 355 -PSHVNILKRVLEEVE----KVMQEFKAMLYKS---MEDPHIDLTNLENTVRLLLELEPESDPVWHYLNVQNHRIRGLFE 426 (1068)
Q Consensus 355 -~~~v~vf~kV~~EVE----~ii~~~k~~L~~~---L~~~~~s~ee~~~lI~lLleL~~~~dPiw~~L~sq~~~I~~~le 426 (1068)
.....+.+.+..+.+ +.++.+|+-|..+ |+.+..+..-.-+ .|++ -.+...||..++..+-..+.
T Consensus 120 ~~~~~~a~~d~~~~Le~L~~ka~~rir~fl~~kI~~lr~~~tn~q~iQ~---~LLk----~~~~~~FL~~~~~~~a~El~ 192 (508)
T PF04129_consen 120 SFKDSKAIKDVKPELEKLKNKAVERIRDFLLKKIKSLRKPKTNSQIIQQ---VLLK----YKELFQFLKKHSPELAKELR 192 (508)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHH---HHHh----hHHHHHHHHHhhHHHHHHHH
Confidence 233444554544444 2333333333333 3444322211111 2222 25678888887777776666
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHH
Q 001488 427 KCTLDHEARMETLHNELHERAMSDAR 452 (1068)
Q Consensus 427 ~~~~~~~~r~e~l~~~l~~~~~s~~~ 452 (1068)
..+.+..++ ......+.|..+..+
T Consensus 193 ~~Yv~tM~~--~Y~~~F~~Y~~~L~k 216 (508)
T PF04129_consen 193 QAYVETMSW--YYSSYFKRYIRSLEK 216 (508)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 666544333 222334445444444
No 26
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=54.54 E-value=1.2e+02 Score=35.53 Aligned_cols=91 Identities=18% Similarity=0.174 Sum_probs=49.5
Q ss_pred hhhhcCChHHHHHHHHHhhhhccC------------cchhhHHHHHHHHHHHHHHHHHHHH--HhhcCCCCC---hhHHH
Q 001488 332 GSISKGEFDLAVREYKKAKSIALP------------SHVNILKRVLEEVEKVMQEFKAMLY--KSMEDPHID---LTNLE 394 (1068)
Q Consensus 332 ~~I~~gdYe~aV~dY~kAk~L~~~------------~~v~vf~kV~~EVE~ii~~~k~~L~--~~L~~~~~s---~ee~~ 394 (1068)
+..++|.|++|+++|.++-.+.-+ -.+..|.---.+|+..+.-=+.-+. .|=.....+ ..+.+
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAK 185 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNMEAK 185 (536)
T ss_pred hhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 456899999999999998876542 2345566666777766543222221 111111111 23444
Q ss_pred HHHHHHhcCCCCCChHHHHHHHhHHHHHHHHH
Q 001488 395 NTVRLLLELEPESDPVWHYLNVQNHRIRGLFE 426 (1068)
Q Consensus 395 ~lI~lLleL~~~~dPiw~~L~sq~~~I~~~le 426 (1068)
+-.+..|+|+|..+ =|..+...|.+..+
T Consensus 186 kD~E~vL~LEP~~~----ELkK~~a~i~Sl~E 213 (536)
T KOG4648|consen 186 KDCETVLALEPKNI----ELKKSLARINSLRE 213 (536)
T ss_pred HhHHHHHhhCcccH----HHHHHHHHhcchHh
Confidence 55555667777622 23334444444443
No 27
>KOG2115 consensus Vacuolar sorting protein VPS45 [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.70 E-value=6.9e+02 Score=33.07 Aligned_cols=128 Identities=14% Similarity=0.209 Sum_probs=82.8
Q ss_pred hhhHhhhhhHHHHHHHhhhhcCCCCCCCchhHHhhHHHHHHHHHhhhhhHHHhHHHHHHHHHHHHHHHHHHHHhcCchhh
Q 001488 251 DCFVSCKTTIDDIESKLKRIEEDPEGSGTAHLFKLMQGVSSQANRAFEPLFERQAQAEKIRSVQGMLQRFRTLFNLPSTI 330 (1068)
Q Consensus 251 ~kFI~akdTId~m~~~~k~~e~~~~~~~t~~L~~~L~~i~~~a~~i~~pLler~~KaekLr~vl~~L~R~kfLFeLP~~L 330 (1068)
+.|.-|..+.+++..++.+.-+ -+..|.++|..+....-.-...+++-..+-.+....+..|+-...+.+--..+
T Consensus 268 dsFfha~~~~~~Lq~~~~d~~~-----~vk~Lre~i~~vd~~~~~~s~~Ile~~~~r~n~~kL~~kL~~i~~V~~~q~~v 342 (951)
T KOG2115|consen 268 DSFFHAMTSLHNLQKELRDTMS-----EVKELRENIKEVDAENVRKSIKILELALTRKNVEKLLQKLRLIATVHQAQSTV 342 (951)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 5788888899888888876321 14458888887765433323334433333333333444444445566666778
Q ss_pred HhhhhcCChHHHHHHHHHhhhhcc---CcchhhHHHHHHHHHHHHHHHHHHHHHhh
Q 001488 331 RGSISKGEFDLAVREYKKAKSIAL---PSHVNILKRVLEEVEKVMQEFKAMLYKSM 383 (1068)
Q Consensus 331 ~~~I~~gdYe~aV~dY~kAk~L~~---~~~v~vf~kV~~EVE~ii~~~k~~L~~~L 383 (1068)
...++.+||..|++..+--..++. -..+..|+..|.+.-.....+-..+-+.+
T Consensus 343 q~ll~~~d~~~ALdlI~t~q~~L~g~eL~gl~sfrhL~~ql~el~~tI~~m~t~eF 398 (951)
T KOG2115|consen 343 QLLLSTQDFVGALDLIKTIQELLKGSELLGLHSFRHLRSQLLELYKTIDKMLTREF 398 (951)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHhhhhhcCchhHHhhHHHHHHHHHHHHHHHHHHH
Confidence 888999999999998888777665 24588899998887765555444444333
No 28
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=51.59 E-value=1.1e+02 Score=35.28 Aligned_cols=91 Identities=19% Similarity=0.310 Sum_probs=57.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhcCchhhHhhhhcCChHHHHHHHHHhhhhcc------------CcchhhHHHHHHHHH
Q 001488 302 ERQAQAEKIRSVQGMLQRFRTLFNLPSTIRGSISKGEFDLAVREYKKAKSIAL------------PSHVNILKRVLEEVE 369 (1068)
Q Consensus 302 er~~KaekLr~vl~~L~R~kfLFeLP~~L~~~I~~gdYe~aV~dY~kAk~L~~------------~~~v~vf~kV~~EVE 369 (1068)
+.+.++++|+.- =.+.++.++|..||..|.+|-.|.- +..+.-+..-|++|+
T Consensus 76 e~~~~AE~LK~e----------------GN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce 139 (304)
T KOG0553|consen 76 EDKALAESLKNE----------------GNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCE 139 (304)
T ss_pred hHHHHHHHHHHH----------------HHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHH
Confidence 677778877653 2355788999999999999999752 234444556677777
Q ss_pred HHHH--HHHHHHHHhhcCCCCChhHHHHHHH---HHhcCCCCCC
Q 001488 370 KVMQ--EFKAMLYKSMEDPHIDLTNLENTVR---LLLELEPESD 408 (1068)
Q Consensus 370 ~ii~--~~k~~L~~~L~~~~~s~ee~~~lI~---lLleL~~~~d 408 (1068)
.-+. .--.+.|.||.-.-....+.++.|+ .=|+|+|...
T Consensus 140 ~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne 183 (304)
T KOG0553|consen 140 SALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNE 183 (304)
T ss_pred HHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcH
Confidence 6543 4455667777554333433444443 3456665533
No 29
>cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), and Fer (Fes related) are cytoplasmic (or nonreceptor) tyrosine kinases that play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Although Fes and Fer show redundancy in their biological functions, they show differences in their expression patterns. Fer is ubiquitously expressed while Fes is expressed predominantly in myeloid and endothelial cells. Fes and Fer contain an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a posit
Probab=45.13 E-value=4.8e+02 Score=29.07 Aligned_cols=50 Identities=10% Similarity=0.067 Sum_probs=45.7
Q ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhHhhhhhHHHHHHHhhh
Q 001488 220 SSADLEAGALALKTDLKGRTQQRKQLVKDNFDCFVSCKTTIDDIESKLKR 269 (1068)
Q Consensus 220 S~~dL~~gl~~L~r~I~~~~~~LK~LV~eNf~kFI~akdTId~m~~~~k~ 269 (1068)
|+.+++.+.+.+.++.....+.|..-|-+++..++..+..+++-+.+.-.
T Consensus 66 sW~~iL~ete~~A~~~~~~ae~l~~~i~~~l~~l~~~~~~~rK~~~~~~~ 115 (237)
T cd07657 66 SWKEIMDSTDQLSKLIKQHAEALESGTLDKLTLLIKDKRKAKKAYQEERQ 115 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 38999999999999999999999999999999999999999988866654
No 30
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=44.38 E-value=4.7e+02 Score=28.74 Aligned_cols=39 Identities=18% Similarity=0.157 Sum_probs=31.5
Q ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhHhhhh
Q 001488 220 SSADLEAGALALKTDLKGRTQQRKQLVKDNFDCFVSCKT 258 (1068)
Q Consensus 220 S~~dL~~gl~~L~r~I~~~~~~LK~LV~eNf~kFI~akd 258 (1068)
++..++.....+...=.+....|...|++.+.+|..-..
T Consensus 61 a~~~i~~e~e~~a~~H~~~a~~L~~~v~~~l~~~~~~~~ 99 (236)
T cd07651 61 SLDTLRLETESMAKSHLKFAKQIRQDLEEKLAAFASSYT 99 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467778888888888888888999999999999865543
No 31
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=43.37 E-value=5.2e+02 Score=28.95 Aligned_cols=23 Identities=22% Similarity=0.396 Sum_probs=19.7
Q ss_pred cchhhHHHHHHHHHHHHHHHHHH
Q 001488 356 SHVNILKRVLEEVEKVMQEFKAM 378 (1068)
Q Consensus 356 ~~v~vf~kV~~EVE~ii~~~k~~ 378 (1068)
....-+.+...|++.++.+||..
T Consensus 120 ~~~~~l~~~l~ea~~mL~emr~r 142 (264)
T PF06008_consen 120 LPSEDLQRALAEAQRMLEEMRKR 142 (264)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhc
Confidence 34577999999999999999876
No 32
>PF12022 DUF3510: Domain of unknown function (DUF3510); InterPro: IPR024603 The COG complex comprises eight proteins (COG1-8) and plays critical roles in Golgi structure and function []. This uncharacterised domain is found in the C-terminal of COG complex subunit 2 proteins.
Probab=42.88 E-value=79 Score=31.67 Aligned_cols=55 Identities=9% Similarity=0.124 Sum_probs=40.5
Q ss_pred CCCCCCCCCCccchHHHHHHHHHHHHHHHH-hhcchhhHHHHHHHHHHHHHHHHHH
Q 001488 836 VQWGAAPAVKGVRDVAVELLHTLVAVHAEV-FAGAKPLLDKTLGILVEGLIDTFLS 890 (1068)
Q Consensus 836 ~dW~~~~~P~~VRpYv~E~Ll~LV~VHAEV-~tia~~Lv~rvLs~Lve~vaeelL~ 890 (1068)
+.|-.-+.|+...+||-.+|..|-..+... ..+.+.....++..+++.+++.++.
T Consensus 22 YR~Tnk~~Pt~~S~yV~~il~Pl~~F~~~~~~~~~~~~~~~~~~~v~~~v~~~y~~ 77 (125)
T PF12022_consen 22 YRMTNKPVPTKPSPYVSSILRPLKSFLEEYSSYLSPEIIEEWLQKVITEVTERYYE 77 (125)
T ss_pred hhccCCCCCCCccHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 468888999999999999999999999888 3345555555555555555544443
No 33
>PF11547 E3_UbLigase_EDD: E3 ubiquitin ligase EDD; InterPro: IPR024725 EDD, the ER ubiquitin ligase from the HECT ligases, contains an N-terminal ubiquitin-associated (UBA) domain which binds ubiquitin. Ubiquitin is recognised by helices alpha-1 and -3 in in the UBA domain. EDD is involved in DNA damage repair pathways and binds to mono-ubiquitinated proteins [].; GO: 0043130 ubiquitin binding; PDB: 2QHO_H.
Probab=41.35 E-value=35 Score=28.80 Aligned_cols=30 Identities=37% Similarity=0.530 Sum_probs=23.9
Q ss_pred CChHHHHHHHHHH----HHHHHHHHHhhhhcchh
Q 001488 980 VSPDDLIALAQQY----SSELLQAELERTRINTA 1009 (1068)
Q Consensus 980 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 1009 (1068)
.=|||++.-||.+ +++.+..||.||-+|+.
T Consensus 7 ~vPedlI~q~q~VLqgksR~vIirELqrTnLdVN 40 (53)
T PF11547_consen 7 QVPEDLINQAQVVLQGKSRNVIIRELQRTNLDVN 40 (53)
T ss_dssp GS-HHHHHHHHHHSTTS-HHHHHHHHHHTTT-HH
T ss_pred cCCHHHHHHHHHHHcCCcHHHHHHHHHHhcccHH
Confidence 4599999999987 68899999999998775
No 34
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=38.84 E-value=3.3e+02 Score=31.35 Aligned_cols=82 Identities=16% Similarity=0.214 Sum_probs=60.6
Q ss_pred CCCCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhHhhhhhHHHHHHHhhhhcCCCCCCCch
Q 001488 201 YFSDSFNAKLFLSRVHQNTSSADLEAGALALKTDLKGRTQQRKQLVKDNFDCFVSCKTTIDDIESKLKRIEEDPEGSGTA 280 (1068)
Q Consensus 201 isS~~FdP~~FLs~vH~~tS~~dL~~gl~~L~r~I~~~~~~LK~LV~eNf~kFI~akdTId~m~~~~k~~e~~~~~~~t~ 280 (1068)
|-+..=+.+.||.++|+ ++...|......-+.++.+|+.|| .+|-.+++++..++...++....++. -|.
T Consensus 239 Ie~~~~~~~~~Ldklh~-----eit~~LEkI~SREK~lNnqL~~l~----q~fr~a~~~lse~~e~y~q~~~gv~~-rT~ 308 (384)
T KOG0972|consen 239 IEQKVGNVGPYLDKLHK-----EITKALEKIASREKSLNNQLASLM----QKFRRATDTLSELREKYKQASVGVSS-RTE 308 (384)
T ss_pred HHHhhcchhHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhcccHHH-HHH
Confidence 44555677999999995 566678888888888888888887 47999999999998888876554432 456
Q ss_pred hHHhhHHHHHHH
Q 001488 281 HLFKLMQGVSSQ 292 (1068)
Q Consensus 281 ~L~~~L~~i~~~ 292 (1068)
.|.+.|..+...
T Consensus 309 ~L~eVm~e~E~~ 320 (384)
T KOG0972|consen 309 TLDEVMDEIEQL 320 (384)
T ss_pred HHHHHHHHHHHH
Confidence 676666665433
No 35
>COG2904 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.62 E-value=26 Score=35.14 Aligned_cols=73 Identities=29% Similarity=0.368 Sum_probs=40.7
Q ss_pred cccccCCCCCCCCCCCCCcc-------chhhhhhhcc-cCCCCCCCCcCC--CCchhhcccCCCCCCCCHHHHHHHhcCC
Q 001488 149 TLQSFPRGMECIDPLGLGII-------DNKTLRLITD-SSGSTPKSDRDN--VDNSLREKLMYFSDSFNAKLFLSRVHQN 218 (1068)
Q Consensus 149 ~~~~~p~~~~~~DPLGl~~~-------~~~~L~~~~~-~~~~~P~~~~~~--~~p~lr~~~disS~~FdP~~FLs~vH~~ 218 (1068)
-+|-+|+...- ||||++.. |...+=-+.= ...|.|...+.. +|-.. .-+|.|++| ++||...-+.
T Consensus 28 LL~pvpR~~nR-~~LGl~~~~lpf~G~DiW~~YElSwLn~~G~PqVaig~~~ip~dS--~NlIESKSF--KLYLNSfNqt 102 (137)
T COG2904 28 LLQPVPRSLNR-DPLGLTANNLPFHGADIWTLYELSWLNAKGLPQVAIGTVYIPADS--PNLIESKSF--KLYLNSFNQT 102 (137)
T ss_pred HhccCccccCc-cccccccCCCCccccchhhhhhhhhhccCCCceEEEEEEEecCCC--ccccccchh--hhhhhhcchH
Confidence 35789997665 99999755 1111111100 125566554432 23222 457899999 9999876532
Q ss_pred --CCHHHHHH
Q 001488 219 --TSSADLEA 226 (1068)
Q Consensus 219 --tS~~dL~~ 226 (1068)
+|+++|.+
T Consensus 103 ~f~s~e~v~~ 112 (137)
T COG2904 103 KFASWEEVRQ 112 (137)
T ss_pred hhccHHHHHH
Confidence 34444443
No 36
>KOG2347 consensus Sec5 subunit of exocyst complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.14 E-value=99 Score=40.05 Aligned_cols=173 Identities=11% Similarity=0.097 Sum_probs=116.0
Q ss_pred CchhhcccCCCCCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhHhhhhhHHHHHHHhhhhc
Q 001488 192 DNSLREKLMYFSDSFNAKLFLSRVHQNTSSADLEAGALALKTDLKGRTQQRKQLVKDNFDCFVSCKTTIDDIESKLKRIE 271 (1068)
Q Consensus 192 ~p~lr~~~disS~~FdP~~FLs~vH~~tS~~dL~~gl~~L~r~I~~~~~~LK~LV~eNf~kFI~akdTId~m~~~~k~~e 271 (1068)
..++|..++-.+..|++..|..-.|..-+ .|..++..+.. +....-.+..++.-|+.++.... -.+.++..++.+.
T Consensus 76 ~G~~r~~~~~~~~g~s~~~f~r~~~~qi~--~l~~s~~~~d~-~~~~~~~~~~~~~~~~t~l~~~~-~l~~~i~~~k~~~ 151 (934)
T KOG2347|consen 76 KGDIRVTTLSGGKGTSTVCFRRVNHEQIG--PLDESAVRVDE-QQDQRKVPGRLKGVALTSLQSEP-PLGECIEPLKLKI 151 (934)
T ss_pred CCceEEeeccCccccCchhhhhhhHhhhc--cchhhhhhccc-ccccccccccccccCCcccccCC-CcccccCchhhcc
Confidence 34455567777899999999999998777 88888887777 55566667777888888877776 4444444444321
Q ss_pred --------CCCCCCCchhHHhhHHHHHHHHHhhh--hhHHHhHHHH---HHHHHHHHHHHHHHHHhcCchhhHhhhhcCC
Q 001488 272 --------EDPEGSGTAHLFKLMQGVSSQANRAF--EPLFERQAQA---EKIRSVQGMLQRFRTLFNLPSTIRGSISKGE 338 (1068)
Q Consensus 272 --------~~~~~~~t~~L~~~L~~i~~~a~~i~--~pLler~~Ka---ekLr~vl~~L~R~kfLFeLP~~L~~~I~~gd 338 (1068)
..+++. | ...=| ++++.+--+. +.|+. .+.-+|+-|+.|...+.++-+++
T Consensus 152 ~~d~~~lfp~~~~D----l----------~se~Fspkw~L~enH~~ts~edLk~---~i~~lK~~~n~~~~~~~~lvK~n 214 (934)
T KOG2347|consen 152 NEDNKTLFPITSVD----L----------RSEHFSPKWFLLENHQDTSFEDLKA---GILNLKRDLNGRKEGSLQLVKDN 214 (934)
T ss_pred hhhhhhhccccccc----c----------ccccCChhHHHHhhhhhccHHHHHH---HHHHHHHhhcchhhhhHHHHhcc
Confidence 111110 1 11112 2334333333 44444 44556788999999999999999
Q ss_pred hHHHHHHHHHhhhhc----c---CcchhhHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 001488 339 FDLAVREYKKAKSIA----L---PSHVNILKRVLEEVEKVMQEFKAMLYKSMEDP 386 (1068)
Q Consensus 339 Ye~aV~dY~kAk~L~----~---~~~v~vf~kV~~EVE~ii~~~k~~L~~~L~~~ 386 (1068)
++.+|++|...-.+- . +-+.....++|.-++... .....+|+.+..-
T Consensus 215 ~~~fi~~~dtl~~i~~kLe~~e~~~~gs~t~~l~n~i~~~~-s~ad~iF~~vl~R 268 (934)
T KOG2347|consen 215 FDSFISCKDTLDNIHQKLERGEEDPHGSGTTKLENCIKNST-SRADLIFEDVLER 268 (934)
T ss_pred hhHHHHHHHHHHHHHHHHhccccCccchHHHHHHHHHHHhh-hHHHHHHHHHHhc
Confidence 999999999876642 1 234556667888777777 7778888888654
No 37
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=35.83 E-value=5.3e+02 Score=32.77 Aligned_cols=163 Identities=13% Similarity=0.157 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHHHHHHHhhhHhHHHH-HHhhhhcCCCCCCCCC----CCCcc
Q 001488 773 SSELYNKYKDIWLQSREKDQEGTDIQDLVMSFSGLEEKVLEQYTFAKANLIRTA-ATTFLLDSGVQWGAAP----AVKGV 847 (1068)
Q Consensus 773 iP~L~~~fe~~f~~~~~l~~~~~~i~~v~~~l~qLd~rLfe~Y~~~Ka~~L~~~-I~~gil~~g~dW~~~~----~P~~V 847 (1068)
+-+|...|..-|.. +.-....+-+.+..+..+-.+.|.++++.++..|... + .+.| ||.-+
T Consensus 336 i~~LL~fY~~~~~k---~i~~~s~L~~tl~~L~~~a~~~f~~~l~~~~~~l~~~~~-----------~~~~~DL~PP~~l 401 (618)
T PF06419_consen 336 IANLLSFYQMTFSK---LIGEDSSLIETLKELQDLAQKKFFSSLRDHVAKLLRSAP-----------EPPPADLSPPEWL 401 (618)
T ss_pred HHHHHHHHHHHHHH---HcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC-----------CCCCCCCCCCHHH
Q ss_pred chHHHHHHHHHHHHHHHHhhcch-----hhHHHHHHHHHHHHHHHHHHhhhhhccccc-cccCchhhHHHHhhHHHHHHh
Q 001488 848 RDVAVELLHTLVAVHAEVFAGAK-----PLLDKTLGILVEGLIDTFLSLFDENQSNNL-KSLDANGFCQLMLELDYFETI 921 (1068)
Q Consensus 848 RpYv~E~Ll~LV~VHAEV~tia~-----~Lv~rvLs~Lve~vaeelL~~F~~~~~~~v-~~fs~~G~lQAtLDIefl~qt 921 (1068)
+.|+.. |..|+.+|..-..-.. ..+.+|+...++-+.+.+.++-..-..+.- .-|-.|-+ .+|+.+
T Consensus 402 ~d~l~~-L~~il~~~~~s~~~~~~~~~~~~~~~Il~~~idpll~~c~~~a~~L~~~~~~~if~iNCl-------~~i~s~ 473 (618)
T PF06419_consen 402 IDFLSL-LREILDVYDSSLSPDDDRENDNDFKPILDEPIDPLLQMCQKSASPLAPKDDRAIFMINCL-------DLIQST 473 (618)
T ss_pred HHHHHH-HHHHHHHhhcccCCccchhhhhHHHHHHHHHhHHHHHHHHHHhhccCChhhhHHHHHHhH-------HHHHHH
Q ss_pred hccc-CChhHHHHHHHHHHHHHHH-HHhHHHhhhcCCC
Q 001488 922 LNPY-FTHDARESLKNLQGVLLEK-ATVSVAEAVENPG 957 (1068)
Q Consensus 922 Ls~Y-~T~~A~~~~~~l~~~~~~~-a~e~v~~~~~~~~ 957 (1068)
|++| .+..-.+-+....++.++. +-+.++..++.-|
T Consensus 474 L~~~~~~~~~~e~L~~~id~~~~~Lv~~Q~~~lL~~sG 511 (618)
T PF06419_consen 474 LSPFEFTSERVEELQDQIDAHVDTLVEEQASFLLERSG 511 (618)
T ss_pred ccChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
No 38
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=35.70 E-value=5e+02 Score=32.01 Aligned_cols=67 Identities=18% Similarity=0.311 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHH--HHHHHhhcCCCCCh-hHHHHHHHHHhcCCCCCChHHHHHHHh---------HHHHHHHHHHHHHH
Q 001488 365 LEEVEKVMQEFK--AMLYKSMEDPHIDL-TNLENTVRLLLELEPESDPVWHYLNVQ---------NHRIRGLFEKCTLD 431 (1068)
Q Consensus 365 ~~EVE~ii~~~k--~~L~~~L~~~~~s~-ee~~~lI~lLleL~~~~dPiw~~L~sq---------~~~I~~~le~~~~~ 431 (1068)
++=|+-+++.|- .+||..+.....+. -+.+++...|.+|+-...--|+||.+- +.++..+|..|-..
T Consensus 517 hHlc~~vVE~FpessDLYSEiGA~tRSAkVDf~qL~DNL~qlErrCKaSWe~L~~Iakhe~~p~l~~r~~~fl~~cA~R 595 (817)
T KOG1925|consen 517 HHLCSLVVETFPESSDLYSEIGALTRSAKVDFEQLTDNLGQLERRCKASWESLRSIAKHELAPALRARLTHFLDQCARR 595 (817)
T ss_pred HHHHHHHHHhCCcchhHHHHhHhhhhhhhccHHHHHHHHHHHHHHhhHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHH
Confidence 455666666664 46777665543332 246777788888888888899999873 34566666666544
No 39
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=34.70 E-value=3e+02 Score=29.40 Aligned_cols=85 Identities=14% Similarity=0.209 Sum_probs=48.7
Q ss_pred HHHHHHHHHHhhhHHHHHHHHhhhhhhHhhhhhHHHHHHHhhhhcCCCCCCCchhHHhhHHHHHHHHHhhhhhHHHhHHH
Q 001488 227 GALALKTDLKGRTQQRKQLVKDNFDCFVSCKTTIDDIESKLKRIEEDPEGSGTAHLFKLMQGVSSQANRAFEPLFERQAQ 306 (1068)
Q Consensus 227 gl~~L~r~I~~~~~~LK~LV~eNf~kFI~akdTId~m~~~~k~~e~~~~~~~t~~L~~~L~~i~~~a~~i~~pLler~~K 306 (1068)
.+..|..+|..+.+.+|.| ++|+..|-.+++...... .+..+.+.| +.+...+-+.+++
T Consensus 80 el~~ld~~i~~l~ek~q~l-----------~~t~s~veaEik~L~s~L---t~eemQe~i-------~~L~kev~~~~er 138 (201)
T KOG4603|consen 80 ELQVLDGKIVALTEKVQSL-----------QQTCSYVEAEIKELSSAL---TTEEMQEEI-------QELKKEVAGYRER 138 (201)
T ss_pred HHHHHhHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHhc---ChHHHHHHH-------HHHHHHHHHHHHH
Confidence 4556777777777777766 457777777777543211 122233333 3344445566667
Q ss_pred HHHHHHHHHHHHHHHHHhcCchhhHhhhhcCChHHHHHHHHHh
Q 001488 307 AEKIRSVQGMLQRFRTLFNLPSTIRGSISKGEFDLAVREYKKA 349 (1068)
Q Consensus 307 aekLr~vl~~L~R~kfLFeLP~~L~~~I~~gdYe~aV~dY~kA 349 (1068)
+.+++... ..|...|-+++-+.|.++
T Consensus 139 l~~~k~g~-----------------~~vtpedk~~v~~~y~~~ 164 (201)
T KOG4603|consen 139 LKNIKAGT-----------------NHVTPEDKEQVYREYQKY 164 (201)
T ss_pred HHHHHHhc-----------------ccCCHHHHHHHHHHHHHH
Confidence 77766653 334455556666666554
No 40
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=34.19 E-value=1.7e+02 Score=37.72 Aligned_cols=107 Identities=16% Similarity=0.207 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhh--hhhhHhh-hhhHHHHHHHhhhhcCCCCCCCchhHHhhHHHHHHHHHhhh
Q 001488 221 SADLEAGALALKTDLKGRTQQRKQLVKDN--FDCFVSC-KTTIDDIESKLKRIEEDPEGSGTAHLFKLMQGVSSQANRAF 297 (1068)
Q Consensus 221 ~~dL~~gl~~L~r~I~~~~~~LK~LV~eN--f~kFI~a-kdTId~m~~~~k~~e~~~~~~~t~~L~~~L~~i~~~a~~i~ 297 (1068)
..||...+..|.++++.+++.+..|..+. +-+|... ..-++.+...+..|.+ .+.+|+++|..=+...-.+|
T Consensus 547 ~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqd-----k~~~LE~sLsaEtriKldLf 621 (697)
T PF09726_consen 547 RRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQD-----KNQHLENSLSAETRIKLDLF 621 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH-----HHHHHHHhhhHHHHHHHHHH
Confidence 46777788888889999999988888866 4444311 1123444444444432 24568888876555556799
Q ss_pred hhHHHhHHHHHHHHHHHHHHHHHHHHhcCchhhHhhh
Q 001488 298 EPLFERQAQAEKIRSVQGMLQRFRTLFNLPSTIRGSI 334 (1068)
Q Consensus 298 ~pLler~~KaekLr~vl~~L~R~kfLFeLP~~L~~~I 334 (1068)
..|.+.+.+++-+.+. +.+|=+.|.+|-.+|.+-+
T Consensus 622 saLg~akrq~ei~~~~--~~~~d~ei~~lk~ki~~~~ 656 (697)
T PF09726_consen 622 SALGDAKRQLEIAQGQ--LRKKDKEIEELKAKIAQLL 656 (697)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 9999999988877665 5677788888877776654
No 41
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=32.62 E-value=34 Score=27.40 Aligned_cols=21 Identities=33% Similarity=0.624 Sum_probs=18.0
Q ss_pred hhhcCChHHHHHHHHHhhhhc
Q 001488 333 SISKGEFDLAVREYKKAKSIA 353 (1068)
Q Consensus 333 ~I~~gdYe~aV~dY~kAk~L~ 353 (1068)
+++.++|++|+.||.++-.+.
T Consensus 11 sle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 11 SLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred HHHhccHHHHHHHHHHHHHHH
Confidence 477899999999999987764
No 42
>KOG2398 consensus Predicted proline-serine-threonine phosphatase-interacting protein (PSTPIP) [Cell cycle control, cell division, chromosome partitioning]
Probab=31.72 E-value=9.8e+02 Score=30.54 Aligned_cols=48 Identities=10% Similarity=0.039 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhHhhhhhHHHHHHHhh
Q 001488 221 SADLEAGALALKTDLKGRTQQRKQLVKDNFDCFVSCKTTIDDIESKLK 268 (1068)
Q Consensus 221 ~~dL~~gl~~L~r~I~~~~~~LK~LV~eNf~kFI~akdTId~m~~~~k 268 (1068)
++.+...-..|...-.++...++.++++=...|...+.+-..++..+.
T Consensus 49 ~~~~r~~~~~ma~~h~~l~~~l~~~i~~~~k~~~~~~k~~k~~~~~~v 96 (611)
T KOG2398|consen 49 WLVMRTSTEAMAKSHLELSRELQDLIKDVAKYYAEQLKTRKKSKEEGV 96 (611)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 445555566666666677777777887777777777777666666554
No 43
>cd07686 F-BAR_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fer (Fes related) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fer (Fes related) is a cytoplasmic (or nonreceptor) tyrosine kinase expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membran
Probab=30.55 E-value=8.1e+02 Score=27.44 Aligned_cols=50 Identities=8% Similarity=0.013 Sum_probs=46.2
Q ss_pred CCHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhHhhhhhHHHHHHHhh
Q 001488 219 TSSADLEAGALALKTDLKGRTQQRKQLVKDNFDCFVSCKTTIDDIESKLK 268 (1068)
Q Consensus 219 tS~~dL~~gl~~L~r~I~~~~~~LK~LV~eNf~kFI~akdTId~m~~~~k 268 (1068)
.++.+++.+.+.+.+......+++..-|-+++.+++.=+..+++-+.++-
T Consensus 65 ~sW~~vl~qte~iA~~~~~~aE~l~~~i~~~l~~l~~~~~~~~k~~~~~~ 114 (234)
T cd07686 65 KSWLHMVQQTEQLSKIMKTHAEELNSGPLHRLTMMIKDKQQVKKSYIGVH 114 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36889999999999999999999999999999999999999999888874
No 44
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=29.18 E-value=8e+02 Score=26.94 Aligned_cols=42 Identities=5% Similarity=-0.070 Sum_probs=33.0
Q ss_pred CCHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhHhhhhhH
Q 001488 219 TSSADLEAGALALKTDLKGRTQQRKQLVKDNFDCFVSCKTTI 260 (1068)
Q Consensus 219 tS~~dL~~gl~~L~r~I~~~~~~LK~LV~eNf~kFI~akdTI 260 (1068)
.++..++.....+.+.-....+.+..-|.+.+..|+......
T Consensus 65 ~aw~~i~~e~~~~a~~H~~~a~~l~~~v~~~l~~~~~~~~~~ 106 (251)
T cd07653 65 KAFRSILNEVNDIAGQHELIAENLNSNVCKELKTLISELRQE 106 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677777888888888888888888999999998876543
No 45
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.88 E-value=1.2e+02 Score=36.36 Aligned_cols=59 Identities=19% Similarity=0.259 Sum_probs=47.0
Q ss_pred CCCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhHhhhhhHHHHHHHhhhh
Q 001488 202 FSDSFNAKLFLSRVHQNTSSADLEAGALALKTDLKGRTQQRKQLVKDNFDCFVSCKTTIDDIESKLKRI 270 (1068)
Q Consensus 202 sS~~FdP~~FLs~vH~~tS~~dL~~gl~~L~r~I~~~~~~LK~LV~eNf~kFI~akdTId~m~~~~k~~ 270 (1068)
+=+-|+|+.|.+.++.--.++.|...+..+. .+...+=++.|-..+| |++++|.+|+++
T Consensus 281 DlE~F~pk~FvsrlLGmGDi~glvek~~ev~--~~d~~el~~kl~~gkF--------tlrd~y~Qfq~i 339 (483)
T KOG0780|consen 281 DLEPFDPKPFVSRLLGMGDIEGLVEKVQEVG--KDDAKELVEKLKQGKF--------TLRDFYDQFQNI 339 (483)
T ss_pred ccCCCChHHHHHHHhccccHHHHHHHHHHHh--hhhHHHHHHHHHhCCc--------cHHHHHHHHHHH
Confidence 3478999999999999999999999998888 4444454555555555 899999999975
No 46
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=27.88 E-value=3.4e+02 Score=27.66 Aligned_cols=67 Identities=19% Similarity=0.332 Sum_probs=49.6
Q ss_pred CCCCHHHHHH-----HhcCCCCHHHHHHHHHHHHHHHHhhhHHHHHH----H--HhhhhhhHhhhhhHHHHHHHhhhh
Q 001488 204 DSFNAKLFLS-----RVHQNTSSADLEAGALALKTDLKGRTQQRKQL----V--KDNFDCFVSCKTTIDDIESKLKRI 270 (1068)
Q Consensus 204 ~~FdP~~FLs-----~vH~~tS~~dL~~gl~~L~r~I~~~~~~LK~L----V--~eNf~kFI~akdTId~m~~~~k~~ 270 (1068)
+.+|+.-|+. +.|=+...+.+...-+.|...|++-+..+-.+ + ..+|.+|..+-..|+.|...+...
T Consensus 22 eklds~~~l~Lc~R~Q~HL~~cA~~Va~~Q~~L~~riKevd~~~~~l~~~~~erqk~~~k~ae~L~kv~els~~L~~~ 99 (131)
T PF10158_consen 22 EKLDSRPVLRLCSRYQEHLNQCAEAVAFDQNALAKRIKEVDQEIAKLLQQMVERQKRFAKFAEQLEKVNELSQQLSRC 99 (131)
T ss_pred HccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777776 56667778888888888887777776665433 3 478888888888888888777753
No 47
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=27.33 E-value=65 Score=30.34 Aligned_cols=44 Identities=18% Similarity=0.196 Sum_probs=36.2
Q ss_pred CCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHhhh
Q 001488 204 DSFNAKLFLSRVHQNTSSADLEAGALALKTDLKGRTQQRKQLVKDNF 250 (1068)
Q Consensus 204 ~~FdP~~FLs~vH~~tS~~dL~~gl~~L~r~I~~~~~~LK~LV~eNf 250 (1068)
..|+-..|-.- +.+++.|...|++|.+..+.+.+.|+.|+.+|=
T Consensus 21 ~e~~~~E~~~i---ns~LD~Lns~LD~LE~rnD~l~~~L~~LLesnr 64 (83)
T PF03670_consen 21 DEFDEEEYAAI---NSMLDQLNSCLDHLEQRNDHLHAQLQELLESNR 64 (83)
T ss_pred ccccHHHHHHH---HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 45555554332 578999999999999999999999999999983
No 48
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=26.11 E-value=6.1e+02 Score=28.26 Aligned_cols=47 Identities=19% Similarity=0.229 Sum_probs=31.4
Q ss_pred CChHHHHHHHHHhhhhccCcchhhHHHHHHHHHHHHHHHHHHHHHhh
Q 001488 337 GEFDLAVREYKKAKSIALPSHVNILKRVLEEVEKVMQEFKAMLYKSM 383 (1068)
Q Consensus 337 gdYe~aV~dY~kAk~L~~~~~v~vf~kV~~EVE~ii~~~k~~L~~~L 383 (1068)
.+|..+|..|...+.-+...-..+|.++..==+..|..||..||.--
T Consensus 164 ~~Y~~~v~~~~~~~~~~~~~m~~~~~~~Q~lEe~Ri~~~k~~l~~y~ 210 (261)
T cd07648 164 DEYKALVEKYNNIRADFETKMTDSCKRFQEIEESHLRQMKEFLASYA 210 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888999888887765433345555555555667777777776543
No 49
>KOG4514 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.28 E-value=4.9e+02 Score=28.04 Aligned_cols=20 Identities=30% Similarity=0.441 Sum_probs=10.7
Q ss_pred hHHHhHHHHHHHHHHHHHHH
Q 001488 299 PLFERQAQAEKIRSVQGMLQ 318 (1068)
Q Consensus 299 pLler~~KaekLr~vl~~L~ 318 (1068)
|+..-..++..+|..+++|+
T Consensus 200 pv~~La~qir~irRlve~le 219 (222)
T KOG4514|consen 200 PVEQLAQQIRQIRRLVEMLE 219 (222)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 34444445556666665554
No 50
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=24.23 E-value=1.2e+03 Score=27.20 Aligned_cols=38 Identities=13% Similarity=0.195 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHhcCchhhHhhhhcCChHHHHHHHHHh
Q 001488 312 SVQGMLQRFRTLFNLPSTIRGSISKGEFDLAVREYKKA 349 (1068)
Q Consensus 312 ~vl~~L~R~kfLFeLP~~L~~~I~~gdYe~aV~dY~kA 349 (1068)
.+..+++..=-.+..|-.+..||+-.-|=..+..|...
T Consensus 155 ~~~~ml~~Li~~L~~~l~l~~~ik~v~~Lrrl~~~~e~ 192 (338)
T PF04124_consen 155 ALQQMLSQLINQLRTPLKLPACIKTVGYLRRLPVLTES 192 (338)
T ss_pred HHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhccccch
Confidence 34455666666888999999999877777666665544
No 51
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=24.07 E-value=1.5e+02 Score=26.03 Aligned_cols=18 Identities=28% Similarity=0.458 Sum_probs=16.1
Q ss_pred cCChHHHHHHHHHhhhhc
Q 001488 336 KGEFDLAVREYKKAKSIA 353 (1068)
Q Consensus 336 ~gdYe~aV~dY~kAk~L~ 353 (1068)
.|+|+.|++.|..|-.++
T Consensus 18 ~g~~~~A~~~Y~~ai~~l 35 (69)
T PF04212_consen 18 AGNYEEALELYKEAIEYL 35 (69)
T ss_dssp TTSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 799999999999998754
No 52
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=24.02 E-value=9.1e+02 Score=27.35 Aligned_cols=49 Identities=14% Similarity=0.136 Sum_probs=29.9
Q ss_pred cCChHHHHHHHHHhhhhccCcchhhHHHHHHHHHHHHHHHHHHHHHhhc
Q 001488 336 KGEFDLAVREYKKAKSIALPSHVNILKRVLEEVEKVMQEFKAMLYKSME 384 (1068)
Q Consensus 336 ~gdYe~aV~dY~kAk~L~~~~~v~vf~kV~~EVE~ii~~~k~~L~~~L~ 384 (1068)
..+|...|+.|.+.+.-+......+|.+...==+..+.-|+..||.--.
T Consensus 170 ~~~Y~~~v~~l~~~~~~~~~~m~~~~~~~Q~~Ee~Ri~~~k~~l~~y~~ 218 (269)
T cd07673 170 TESYKLYVEKYALAKADFEQKMTETAQKFQDIEETHLIRIKEIIGSYSN 218 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568888888888776543333444444444444567777777765443
No 53
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=23.87 E-value=1.7e+02 Score=26.89 Aligned_cols=48 Identities=17% Similarity=0.266 Sum_probs=34.0
Q ss_pred hcCChHHHHHHHHHhhhhcc-----Cc---chhhHHHHHHHHHHHHHHHHHHHHHh
Q 001488 335 SKGEFDLAVREYKKAKSIAL-----PS---HVNILKRVLEEVEKVMQEFKAMLYKS 382 (1068)
Q Consensus 335 ~~gdYe~aV~dY~kAk~L~~-----~~---~v~vf~kV~~EVE~ii~~~k~~L~~~ 382 (1068)
+.|+|+.|+..|..|-.++. +. -...++.-..+.-..++.++..|.+.
T Consensus 18 ~~g~y~eAl~~Y~~aie~l~~~lk~e~d~~~k~~~r~ki~eY~~RAE~Lk~~l~~~ 73 (77)
T cd02683 18 QEGRFQEALVCYQEGIDLLMQVLKGTKDEAKKKNLRQKISEYMDRAEAIKKRLDQE 73 (77)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46999999999999987552 12 23556666677777777777776443
No 54
>cd07649 F-BAR_GAS7 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Growth Arrest Specific protein 7. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Growth Arrest Specific protein 7 (GAS7) is mainly expressed in the brain and is required for neurite outgrowth. It may also play a role in the protection and migration of embryonic stem cells. Treatment-related acute myeloid leukemia (AML) has been reported resulting from mixed-lineage leukemia (MLL)-GAS7 translocations as a complication of primary cancer treatment. GAS7 contains an N-terminal SH3 domain, followed by a WW domain, and a central F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=22.24 E-value=1.1e+03 Score=26.19 Aligned_cols=47 Identities=13% Similarity=0.071 Sum_probs=32.1
Q ss_pred CChHHHHHHHHHhhhhccCcchhhHHHHHHHHHHHHHHHHHHHHHhh
Q 001488 337 GEFDLAVREYKKAKSIALPSHVNILKRVLEEVEKVMQEFKAMLYKSM 383 (1068)
Q Consensus 337 gdYe~aV~dY~kAk~L~~~~~v~vf~kV~~EVE~ii~~~k~~L~~~L 383 (1068)
.+|..++..|.+++.-+......+|.....-=+..+.-||..||+--
T Consensus 168 ~e~~~~ve~y~~~r~~we~~m~~~~~~~Q~~Ee~Rl~~lk~~L~~y~ 214 (233)
T cd07649 168 DDLMRCVDLYNQAQSKWFEEMVTTSLELERLEVERIEMIRQHLCQYT 214 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777888888877655545556666666666677777887776543
No 55
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=22.16 E-value=76 Score=30.92 Aligned_cols=40 Identities=18% Similarity=0.431 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHhhhHhHHHHHHhhhhcCCCCCCCCCC
Q 001488 802 MSFSGLEEKVLEQYTFAKANLIRTAATTFLLDSGVQWGAAPA 843 (1068)
Q Consensus 802 ~~l~qLd~rLfe~Y~~~Ka~~L~~~I~~gil~~g~dW~~~~~ 843 (1068)
..+..++..+= .-+.+...|.++...=|+.+|+||...|.
T Consensus 58 ~~l~~~~~~lk--~~r~~~~v~k~v~q~lI~gSgVdWa~D~~ 97 (106)
T PF05837_consen 58 EKLEKLEKELK--KSRQRWRVMKNVFQALIVGSGVDWAEDPK 97 (106)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhcCCCcccCHH
Confidence 33555555542 34567778888888889999999998864
No 56
>PF02809 UIM: Ubiquitin interaction motif; InterPro: IPR003903 The Ubiquitin Interacting Motif (UIM), or 'LALAL-motif', is a stretch of about 20 amino acid residues, which was first described in the 26S proteasome subunit PSD4/RPN-10 that is known to recognise ubiquitin [,]. In addition, the UIM is found, often in tandem or triplet arrays, in a variety of proteins either involved in ubiquitination and ubiquitin metabolism, or known to interact with ubiquitin-like modifiers. Among the UIM proteins are two different subgroups of the UBP (ubiquitin carboxy-terminal hydrolase) family of deubiquitinating enzymes, one F-box protein, one family of HECT-containing ubiquitin-ligases (E3s) from plants, and several proteins containing ubiquitin-associated UBA and/or UBX domains []. In most of these proteins, the UIM occurs in multiple copies and in association with other domains such as UBA (IPR015940 from INTERPRO), UBX (IPR001012 from INTERPRO), ENTH, EH (IPR000261 from INTERPRO), VHS (IPR002014 from INTERPRO), SH3 (IPR001452 from INTERPRO), HECT (IPR000569 from INTERPRO), VWFA (IPR002035 from INTERPRO), EF-hand calcium-binding, WD-40 (IPR001680 from INTERPRO), F-box (IPR001810 from INTERPRO), LIM (IPR001781 from INTERPRO), protein kinase (IPR000719 from INTERPRO), ankyrin (IPR002110 from INTERPRO), PX (IPR001683 from INTERPRO), phosphatidylinositol 3- and 4-kinase (IPR000403 from INTERPRO), C2 (IPR000008 from INTERPRO), OTU (IPR003323 from INTERPRO), dnaJ (IPR001623 from INTERPRO), RING-finger (IPR001841 from INTERPRO) or FYVE-finger (IPR017455 from INTERPRO). UIMs have been shown to bind ubiquitin and to serve as a specific targeting signal important for monoubiquitination. Thus, UIMs may have several functions in ubiquitin metabolism each of which may require different numbers of UIMs [, , ]. The UIM is unlikely to form an independent folding domain. Instead, based on the spacing of the conserved residues, the motif probably forms a short alpha-helix that can be embedded into different protein folds []. Some proteins known to contain an UIM are listed below: Eukaryotic PSD4/RPN-10/S5, a multi-ubiquitin binding subunit of the 26S proteasome. Vertebrate Machado-Joseph disease protein 1 (Ataxin-3), which acts as a histone-binding protein that regulates transcription; defects in Ataxin-3 cause the neurodegenerative disorder Machado-Joseph disease (MJD). Vertebrate epsin and epsin2. Vertebrate hepatocyte growth factor-regulated tyrosine kinase substrate (HRS). Mammalian epidermal growth factor receptor substrate 15 (EPS15), which is involved in cell growth regulation. Mammalian epidermal growth factor receptor substrate EPS15R. Drosophila melanogaster (Fruit fly) liquid facets (lqf), an epsin. Yeast VPS27 vacuolar sorting protein, which is required for membrane traffic to the vacuole. ; PDB: 2KDE_A 2KDF_A 1YX6_A 1YX5_A 1YX4_A 1P9C_A 1UEL_B 1P9D_S 2KLZ_A.
Probab=21.96 E-value=67 Score=21.80 Aligned_cols=12 Identities=67% Similarity=0.662 Sum_probs=9.8
Q ss_pred ccHHHHHHHHHH
Q 001488 5 SDEDELLQMALK 16 (1068)
Q Consensus 5 ~~~~~~~~~~~~ 16 (1068)
++||+-||+||+
T Consensus 1 ~~Ed~~L~~Al~ 12 (18)
T PF02809_consen 1 MDEDEDLQRALE 12 (18)
T ss_dssp SHHHHHHHHHHH
T ss_pred CchHHHHHHHHH
Confidence 368889999986
No 57
>smart00726 UIM Ubiquitin-interacting motif. Present in proteasome subunit S5a and other ubiquitin-associated proteins.
Probab=21.35 E-value=68 Score=23.74 Aligned_cols=12 Identities=67% Similarity=0.747 Sum_probs=10.2
Q ss_pred cHHHHHHHHHHH
Q 001488 6 DEDELLQMALKE 17 (1068)
Q Consensus 6 ~~~~~~~~~~~~ 17 (1068)
+|||.||+||++
T Consensus 1 ~EDe~Lq~Ai~l 12 (26)
T smart00726 1 DEDEDLQLALEL 12 (26)
T ss_pred ChHHHHHHHHHH
Confidence 578899999986
No 58
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=20.71 E-value=81 Score=23.23 Aligned_cols=21 Identities=19% Similarity=0.452 Sum_probs=16.7
Q ss_pred hhhcCChHHHHHHHHHhhhhc
Q 001488 333 SISKGEFDLAVREYKKAKSIA 353 (1068)
Q Consensus 333 ~I~~gdYe~aV~dY~kAk~L~ 353 (1068)
+...|+|+.|+..|.+|-.+-
T Consensus 11 ~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 11 YFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHhCCchHHHHHHHHHHHHC
Confidence 456899999999999997763
No 59
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=20.43 E-value=82 Score=24.14 Aligned_cols=20 Identities=20% Similarity=0.506 Sum_probs=15.6
Q ss_pred hhhcCChHHHHHHHHHhhhh
Q 001488 333 SISKGEFDLAVREYKKAKSI 352 (1068)
Q Consensus 333 ~I~~gdYe~aV~dY~kAk~L 352 (1068)
+.+.|+|+.|+..|.++-.+
T Consensus 9 ~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 9 YRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHCT-HHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 45689999999999997654
Done!