Query 001488
Match_columns 1068
No_of_seqs 214 out of 338
Neff 5.6
Searched_HMMs 29240
Date Tue Mar 26 16:52:21 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001488.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_788-792//hhsearch_pdb/001488hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a2f_X Exocyst complex compone 1.0 1 1 47.2 11.5 106 807-924 185-291 (325)
2 2d2s_A Exocyst complex compone 1.0 1 1 39.5 19.7 199 316-595 11-217 (235)
3 3fhn_A Protein transport prote 1.0 1 1 33.6 14.1 178 795-986 502-694 (706)
4 2fji_1 Exocyst complex compone 1.0 1 1 23.4 26.8 336 602-997 7-370 (399)
5 3n1e_A Vacuolar protein sortin 1.0 1 1 18.9 10.1 82 837-925 42-126 (141)
6 2qho_B E3 ubiquitin-protein li 1.0 1 1 14.0 3.0 31 980-1010 7-41 (53)
7 3aco_A Pacsin2, protein kinase 1.0 1 1 13.7 10.3 13 252-264 50-62 (350)
8 3m3w_A Pacsin3, protein kinase 1.0 1 1 13.6 9.9 13 422-434 147-159 (320)
9 2rpa_A Katanin P60 ATPase-cont 1.0 1 1 13.6 4.6 43 331-373 20-66 (78)
10 2yxh_A MAZG-related protein; T 1.0 1 1 13.6 0.7 77 821-914 3-85 (116)
No 1
>2a2f_X Exocyst complex component SEC15; all helical structure, protein transport; 2.50A {Drosophila melanogaster}
Probab=1.00 E-value=1 Score=47.23 Aligned_cols=106 Identities=15% Similarity=0.170 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHH
Q ss_conf 99999989788666869999973210289988988988741258999999999999988303034-49999999999999
Q 001488 807 LEEKVLEQYTFAKANLIRTAATTFLLDSGVQWGAAPAVKGVRDVAVELLHTLVAVHAEVFAGAKP-LLDKTLGILVEGLI 885 (1068)
Q Consensus 807 Ld~~Lfe~Yv~~Ka~~L~~~I~~gil~~g~dW~~~p~P~~VRpYv~E~Ll~LV~VHAEV~sia~~-Ll~rvLs~Lve~va 885 (1068)
-+.+||+. +..|.+-+.. ...+||.+..+|++.++|+.+++..|=.+=+ +.+..|+ ....+.-.-+..++
T Consensus 185 Ae~~I~~~-v~~KIDdfl~-------la~yDW~~~~~~~~ps~yi~dli~fL~~~f~-sl~~LP~~v~~~~~~~a~~his 255 (325)
T 2a2f_X 185 AEKQVGLR-ICSKIDEFFE-------LSAYDWLLVEPPGIASAFITDMISYLKSTFD-SFAFKLPHIAQAACRRTFEHIA 255 (325)
T ss_dssp HHHHHHHH-HHHHHHHHHT-------TCCTTCC----CCSCCHHHHHHHHHHHHHHH-TTTTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHH-------HCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHHHH
T ss_conf 99999999-9989999987-------6036887888999856899999999999999-9873999999999999999999
Q ss_pred HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 999985312103445545900268998569999983133
Q 001488 886 DTFLSLFDENQSNNLKSLDANGFCQLMLELDYFETILNP 924 (1068)
Q Consensus 886 eelL~~F~~~~~~~v~~fs~~G~lQAtLDIefl~qtL~~ 924 (1068)
+.++..+-.. .|++|+++|..|..+||.|+++-...
T Consensus 256 ~~l~~~Ll~~---~vk~in~~av~~~~~Dv~~lE~fa~~ 291 (325)
T 2a2f_X 256 EKIYSIMYDE---DVKQISTGALTQINLDLMQCEFFAAS 291 (325)
T ss_dssp HHHHHHHTC---------CCTTHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCC---CHHHCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999986486---11432999999899999999999872
No 2
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=1.00 E-value=1 Score=39.47 Aligned_cols=199 Identities=13% Similarity=0.133 Sum_probs=136.3
Q ss_pred HHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 9999789763954347621038837999999996321067-------631569999999999999999999996149999
Q 001488 316 MLQRFRTLFNLPSTIRGSISKGEFDLAVREYKKAKSIALP-------SHVNILKRVLEEVEKVMQEFKAMLYKSMEDPHI 388 (1068)
Q Consensus 316 ~L~R~kfLFeLP~~L~~~I~~gdYd~aV~dY~kAk~L~~~-------~~v~vf~kV~~EVE~ii~~~k~~L~~kL~~~~~ 388 (1068)
.-+..+++-+.|..|.-+|...+|+.||.--.+++.++.. .......-+-..+++....+...|-..+.. +.
T Consensus 11 ~~~~~~wl~~~~deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~-~~ 89 (235)
T 2d2s_A 11 TAQRLKFLDEGVEEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS-SN 89 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT-CS
T ss_pred CCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CC
T ss_conf 10047888716298899999976999999999999998728444565536789999999999999999999999870-58
Q ss_pred CHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 95679999999861799997598999976999999998979889999999878887843215799999863115777543
Q 001488 389 DLTNLENTVRLLLELEPESDPVWHYLNVQNHRIRGLFEKCTLDHEARMETLHNELHERAMSDARWLQIQQDLNQSSGADY 468 (1068)
Q Consensus 389 s~ee~~~lI~lLleL~~~~dPiw~~L~sq~~~L~~~le~~~~~~~~k~e~l~~kl~~~~~s~~~~~~lq~~~~~~~~v~~ 468 (1068)
...+..+.|..|..||-.+.-+-.||.++..+|...+..+.
T Consensus 90 ~~~~~r~~v~~L~rLg~~~~A~~lfL~~rs~~i~~~~r~l~--------------------------------------- 130 (235)
T 2d2s_A 90 EIVHLKSGTENMIKLGLPEQALDLFLQNRSNFIQDLILQIG--------------------------------------- 130 (235)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCC----------------------------------------
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHC---------------------------------------
T ss_conf 77999999999988798169999999999999999988721---------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCC-CCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 333589888888987787256779999999999999972016899998785168-4233000126776666898999999
Q 001488 469 SVTCGNIQPIDSLPVELSGEEVDAFRGRYIRRLTAVLIHHIPAFWKVALSVFSG-KFAKAEEKVGEGKYSIHSLDEVAGM 547 (1068)
Q Consensus 469 ~l~~~~~~~~~~~~~~~~~~ev~~l~~~fi~~Lt~vil~~lp~FWklaqs~~~G-k~~k~~ek~~~~r~s~~~~~e~~~m 547 (1068)
.... -..|+..|+.+.-+.+-+=-+--+..|.+ +- .-...|+.+
T Consensus 131 -------------~~gd--------~~~Yi~~Ls~i~Fs~I~~t~~~f~~~F~~~~~--------------~~~S~lV~W 175 (235)
T 2d2s_A 131 -------------SVDN--------PTNYLTQLAVIRFQTIKKTVEDFQDIFKELGA--------------KISSILVDW 175 (235)
T ss_dssp --------------CCS--------HHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCH--------------HHHHHHHHH
T ss_pred -------------CCCC--------HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC--------------CCCCHHHHH
T ss_conf -------------4687--------89999999999999999999999998478984--------------313389999
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 999999999986621179988821159999999999999986100138
Q 001488 548 IRNTISVYEIKVHNTFNDLEDSNILRSYMRDAIEEISKACQAFEAKES 595 (1068)
Q Consensus 548 i~e~i~~y~~~i~~~F~~l~~~n~~~~yL~~~L~~i~~~~~sL~~~~~ 595 (1068)
+.+-+..|+..+.--.+. ...+. - +|+..+..-|..|..++-
T Consensus 176 a~~eve~f~~l~~rqv~~--~~~l~---~-ecv~i~~~~~~~L~~vGL 217 (235)
T 2d2s_A 176 CSDEVDNHFKLIDKQLLN--DEMLS---P-GSIKSSRKQIDGLKAVGL 217 (235)
T ss_dssp HHHHHHHHHHHHHHHTTC-----CC---H-HHHHHHHHHHHGGGGGTC
T ss_pred HHHHHHHHHHHHHHHCCC--CCCHH---H-HHHHHHHHHHHHHHHCCC
T ss_conf 999999999999988357--86599---9-999999999999987698
No 3
>3fhn_A Protein transport protein TIP20; TIP20P, vesicle tethering, endoplasmic reticulum, ER-golgi transport, membrane, phosphoprotein; 3.00A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=33.61 Aligned_cols=178 Identities=10% Similarity=0.091 Sum_probs=119.4
Q ss_pred CCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC--------CCCCHHHHHHHHHHHHHHHHH
Q ss_conf 3189999989999999-9989788666869999973210289988988988--------741258999999999999988
Q 001488 795 TDIQDLVMSFSGLEEK-VLEQYTFAKANLIRTAATTFLLDSGVQWGAAPAV--------KGVRDVAVELLHTLVAVHAEV 865 (1068)
Q Consensus 795 ~~i~~v~~~l~qLd~~-Lfe~Yv~~Ka~~L~~~I~~gil~~g~dW~~~p~P--------~~VRpYv~E~Ll~LV~VHAEV 865 (1068)
...+++...+..+-.+ +.+.++..-..-+....++|.-. -.|..-+.+ -.+.+-.-+.|..|.--=+..
T Consensus 502 SIFDetIs~Y~~L~~~~~~~~Iv~~v~~eik~~lK~Y~k~--s~W~s~~~~~~~~~~~~lspSaEL~~~L~~L~~~L~~L 579 (706)
T 3fhn_A 502 SLFQNVENDYEKAMSTDMQNSIVHRIQKLLKETLRNYFKI--STWSTLEMSVDENIGPSSVPSAELVNSINVLRRLINKL 579 (706)
T ss_dssp CTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTHHHHHC--CGGGTCCCC------CCCCCCGGGHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 6089999999999988899999999999999999877481--66856678776665556889888999999999999999
Q ss_pred HHC--CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 303--034499999999999999999853121034455459002689985699999831336891389999999999999
Q 001488 866 FAG--AKPLLDKTLGILVEGLIDTFLSLFDENQSNNLKSLDANGFCQLMLELDYFETILNPYFTHDARESLKNLQGVLLE 943 (1068)
Q Consensus 866 ~si--a~~Ll~rvLs~Lve~vaeelL~~F~~~~~~~v~~fs~~G~lQAtLDIefl~qtL~~Y~T~~A~~~~~~l~~~~~~ 943 (1068)
... +..+..+|-..++..+..-+.+..-. ..+|+.+|+.|...|++++-.++..+... +...|+.+.+.+.=
T Consensus 580 ~~~lL~~~~f~~IwR~ia~~Ld~yL~e~IL~-----~nkFS~~Ga~Qf~~D~~~L~~v~~lp~~~-~~~~~~~L~E~l~L 653 (706)
T 3fhn_A 580 DSMDIPLAISLKVKNELLNVIVNYFTESILK-----LNKFNQNGLNQFLHDFKSLSSILSLPSHA-TNYKCMSLHELVKI 653 (706)
T ss_dssp HTSCCCHHHHHHHHHHHHHHHHHHHHHTTTT-----TSCBCHHHHHHHHHHHHHHHTTSCCCTTC-CCHHHHHHHHHHHH
T ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-----CCCCCHHHHHHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHH
T ss_conf 9813777899999999999999999999986-----08648888999999999999985688841-45677999999998
Q ss_pred HHHHHHHHHHCCCCCCCCC----CCCCCHHHHHHHCCCCCCCHHHHH
Q ss_conf 9876887642299999999----899811226632078888957999
Q 001488 944 KATVSVAEAVENPGHHRRP----TRGSEDALADERQQGMTVSPDDLI 986 (1068)
Q Consensus 944 ~a~e~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 986 (1068)
=...- ++...+-.. ..|-.+.+-+.. +--..++++++
T Consensus 654 L~L~~-----d~~~~~f~~~~y~~~~~~~~l~~~~-~i~~l~~~~i~ 694 (706)
T 3fhn_A 654 LKLKY-----DPNNQQFLNPEYIKTGNFTSLKEAY-SIKYLKDTKIQ 694 (706)
T ss_dssp HGGGG-----CGGGTTTTSHHHHHHCCCSHHHHHH-TCSSSCHHHHH
T ss_pred CCCCC-----CCCHHHHHHHHHHCCCCHHHHHHHC-CCCCCCHHHHH
T ss_conf 17988-----7422067789887017748899864-86468878999
No 4
>2fji_1 Exocyst complex component SEC6; exocytosis, tandem helical bundles, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=23.41 Aligned_cols=336 Identities=10% Similarity=0.089 Sum_probs=159.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 999999999999999999999995310144555653-3631113789896553169999999999999999875201344
Q 001488 602 MVLRTLQAEITKIYIGRLCSWMQGSTDGISKDETWI-PVSILERNKSPYTISYLPLAFRSIMKSSMDQISLMIHSLRSEA 680 (1068)
Q Consensus 602 ~~L~~L~~~~r~~~v~~lca~~~~~ae~i~~lEdW~-~~~~~e~~~~~~~iT~LP~~Fe~~i~s~lqki~~~l~~~~~E~ 680 (1068)
+.++.|...-..+....+..|+.+..+.= .++|. +...++.+.+-.=.|.+|..+-.++-..++.+..+.
T Consensus 7 ~~~~~L~~~Y~~~i~~~~~eW~~nil~~E--~~~w~~r~~~P~~d~~g~~~t~~~~dvfqml~eql~~a~~~~------- 77 (399)
T 2fji_1 7 KEKETLFKDYLNLIVVKMTEWIGNLEKAE--FDVFLERSTPPHSDSDGLLFLDGTKTCFQMFTQQVEVAAGTN------- 77 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHCCSCCEECTTSCEECHHHHHHHHHHHHHHHHHHHTT-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHCCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHCC-------
T ss_conf 45999999999999999999999999999--999884689998699988528864799999999999998479-------
Q ss_pred CCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 55236999-89999999999999999999976999864431--014--77543344568889988887678999988988
Q 001488 681 TKSEDMYA-QLLEIQESVRLSFLNRFLDFAGHLEHIASELA--QNK--SNKESQHLQNGYSSDPCTESLSDIPGSVVDPH 755 (1068)
Q Consensus 681 ~~~~di~~-~l~~~~~~Vr~~F~~~~~af~~~Le~la~~~~--~~~--~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 755 (1068)
..+++. ....+.... ..|+..| ...++...-..- ... .+.++ + . ++. .....-
T Consensus 78 --~~~l~~~v~~~~~~~L-~~f~~~~---~~~l~~~~~~~~~~~~~~~~~~~~-~----~-~~~----------~~~~~~ 135 (399)
T 2fji_1 78 --QAKILVGVVERFSDLL-TKRQKNW---ISKISEEIKKQINYNHKYDIDPES-I----T-PED----------ECPGGL 135 (399)
T ss_dssp --CHHHHHHHHHHHHHHH-HHHHHHH---HHHHHHHHHHHHHHHHTTTTGGGS-C----C-TTT----------CCCSCH
T ss_pred --CCCCHHHHHHHHHHHH-HHHHHHH---HHHHHHHHHHHHCCCCCCCCCCCC-C----C-CCC----------CCCCCH
T ss_conf --7300999999999999-9999999---999999999875201000124222-4----7-654----------565418
Q ss_pred CEEEEEECC-HHHHHHHHHHHHHHHHHHHCCCCCCCCCC-CCCHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q ss_conf 545301114-16788652799999998610345444335-4318999998999999999897---886668699999732
Q 001488 756 QRLLIVISN-IGYCKDELSSELYNKYKDIWLQSREKDQE-GTDIQDLVMSFSGLEEKVLEQY---TFAKANLIRTAATTF 830 (1068)
Q Consensus 756 ~RLLltLSN-~~~lr~~~iP~L~~~fe~~f~~~~~~~~~-~~~i~~v~~~l~qLd~~Lfe~Y---v~~Ka~~L~~~I~~g 830 (1068)
+--|+.+.| |..+. ..+..|...|+...... ..+. ...+.++.+.|..+-..-.+.- +.....|.-. .
T Consensus 136 ~e~liA~~Nn~~~~~-e~~~~l~~~~~~~~~~~--~~~~~~~~l~~~~~~f~~l~~~~~~~L~~~if~dl~p~~~----~ 208 (399)
T 2fji_1 136 VEYLIAVSNDQMKAA-DYAVAISSKYGKLVSKV--YEKQITNHLEGTLDGFAEVAQCSSLGLITLMFDDLRKPYQ----E 208 (399)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHHTTSCHH--HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTHHHHT----T
T ss_pred HHHHHHHHCCHHHHH-HHHHHHHHHHHHHCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H
T ss_conf 786566554488899-99999999999862677--8888899999999999999999999999999998899999----8
Q ss_pred HHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC---CH
Q ss_conf 10289988988988741258999999999999988-303034499999999999999999853121034455459---00
Q 001488 831 LLDSGVQWGAAPAVKGVRDVAVELLHTLVAVHAEV-FAGAKPLLDKTLGILVEGLIDTFLSLFDENQSNNLKSLD---AN 906 (1068)
Q Consensus 831 il~~g~dW~~~p~P~~VRpYv~E~Ll~LV~VHAEV-~sia~~Ll~rvLs~Lve~vaeelL~~F~~~~~~~v~~fs---~~ 906 (1068)
++ ...|...+ ++..++.++----... ....+++....+..+.+.+..+.++++.. -.+|. ..
T Consensus 209 lf--t~~W~~~~-------~v~~i~~ti~dy~~d~~~~L~~~~~~~l~~~~~~~~v~~Yl~~l~~-----~~~~~~~~~~ 274 (399)
T 2fji_1 209 IF--SKTWYMGS-------QAQQIADTLDEYLLDIKPQMNSVLFVNFIDNVIGETIIKFLTALSF-----EHSFKNKNNK 274 (399)
T ss_dssp TT--SGGGTTCC-------HHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHGGGG-----CCCCCCGGGH
T ss_pred HC--CCHHCCCC-------HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHC-----CCCCCCHHHH
T ss_conf 57--70300876-------7999999999999999998086999999999999999999999846-----7777840599
Q ss_pred HHHHHHHHHHHHHHHHCCCCCHHH------HH---HHHHHHHHHHHHHHHHHHHHHCCC----CCCCCCCCCCCHHHHHH
Q ss_conf 268998569999983133689138------99---999999999999876887642299----99999989981122663
Q 001488 907 GFCQLMLELDYFETILNPYFTHDA------RE---SLKNLQGVLLEKATVSVAEAVENP----GHHRRPTRGSEDALADE 973 (1068)
Q Consensus 907 G~lQAtLDIefl~qtL~~Y~T~~A------~~---~~~~l~~~~~~~a~e~~~~~~~~~----~~~~~~~~~~~~~~~~~ 973 (1068)
|..|...|++.|...+..|.+... .. .+..+.+ |- ++.|+.+.+.- ...-..+..-.-+.-.=
T Consensus 275 ~~~~l~~D~~~l~~~f~~~~~~~~~~~~~v~~~~~~l~~l~~-L~---~d~~~~i~~~~~~l~~~ypD~~~~~V~aiL~~ 350 (399)
T 2fji_1 275 FLEAMKRDFEIFYQLFVKVLDGNESKDTLITQNFTVMEFFMD-LS---CEPIDSILDIWQKYLEVYWDSRIDLLVGILKC 350 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHHH-HH---HSCGGGHHHHHHHHHTTCTTCCSHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH-HC---CCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 999999999999999998556532025778779999999997-36---89577799999999986899999999999982
Q ss_pred HCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 207888895799999999879999
Q 001488 974 RQQGMTVSPDDLIALAQQYSSELL 997 (1068)
Q Consensus 974 ~~~~~~~~~~~~~~~~~~~~~~~~ 997 (1068)
|+. ++.++...+.+.| .++.
T Consensus 351 R~D---~~~~~~k~ll~~~-~~~~ 370 (399)
T 2fji_1 351 RKD---VSSSERKKIVQQA-TEML 370 (399)
T ss_dssp CTT---CCHHHHHHHHHHH-HHHH
T ss_pred CCC---CCHHHHHHHHHHH-HHHH
T ss_conf 548---9989999999999-9998
No 5
>3n1e_A Vacuolar protein sorting-associated protein 54; spinal muscular atrophy, vesicle trafficking, golgi apparatu tethering complex, GARP.; 1.70A {Mus musculus} PDB: 3n1b_A
Probab=1.00 E-value=1 Score=18.86 Aligned_cols=82 Identities=6% Similarity=0.085 Sum_probs=58.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH--HHH
Q ss_conf 88988988741258999999999999988303034-499999999999999999853121034455459002689--985
Q 001488 837 QWGAAPAVKGVRDVAVELLHTLVAVHAEVFAGAKP-LLDKTLGILVEGLIDTFLSLFDENQSNNLKSLDANGFCQ--LML 913 (1068)
Q Consensus 837 dW~~~p~P~~VRpYv~E~Ll~LV~VHAEV~sia~~-Ll~rvLs~Lve~vaeelL~~F~~~~~~~v~~fs~~G~lQ--AtL 913 (1068)
+|...+ | .++||.-.+.=.++--|-=++.+.|+ -+.-++..+....-+.+-++|.. +.--+-+|-.. .+-
T Consensus 42 ~Wd~k~-p-vpS~~m~tl~Ke~~kLH~~Ls~~LP~~~v~~Im~~Vf~~fk~~l~~~~~~-----~~i~~~~G~q~g~v~~ 114 (141)
T 3n1e_A 42 KYEVKA-P-VPSPCFRNICKQMTKMHEAIFDLLPEEQTQMLFLRINASYKLHLKKQLSH-----LNVINDGGPQNGLVTA 114 (141)
T ss_dssp TCCCCS-S-SSCHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHHHH-----TTCCSSSSHHHHHHHH
T ss_pred HHCCCC-C-CCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH-----CCCCCCCCCCCHHHHH
T ss_conf 725589-9-89989999999999999998832999999999999999999999999998-----6887877630027899
Q ss_pred HHHHHHHHHCCC
Q ss_conf 699999831336
Q 001488 914 ELDYFETILNPY 925 (1068)
Q Consensus 914 DIefl~qtL~~Y 925 (1068)
|++|+...|..-
T Consensus 115 Dv~ff~~~L~~L 126 (141)
T 3n1e_A 115 DVAFYTGNLQAL 126 (141)
T ss_dssp HHHHHHHHHHTS
T ss_pred HHHHHHHHHCCC
T ss_conf 999999986246
No 6
>2qho_B E3 ubiquitin-protein ligase EDD1; protein-protein complex, protein binding/ligase complex; 1.85A {Homo sapiens}
Probab=1.00 E-value=1 Score=13.96 Aligned_cols=31 Identities=35% Similarity=0.527 Sum_probs=25.4
Q ss_pred CCHHHHHHHHHHH----HHHHHHHHHHHHHCCHHH
Q ss_conf 8957999999998----799999998542110113
Q 001488 980 VSPDDLIALAQQY----SSELLQAELERTRINTAC 1010 (1068)
Q Consensus 980 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 1010 (1068)
.-|+|++.-+|++ +++...-||.||-+++--
T Consensus 7 ~vPe~li~q~q~VLqgksR~vIirELqrTnLdVN~ 41 (53)
T 2qho_B 7 VIPEELISQAQVVLQGKSRSVIIRELQRTNLDVNL 41 (53)
T ss_dssp GSCHHHHHHHHHHSTTCCHHHHHHHHHHTTTCHHH
T ss_pred CCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHH
T ss_conf 08599999999995598489999999980752999
No 7
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}
Probab=1.00 E-value=1 Score=13.70 Aligned_cols=13 Identities=8% Similarity=0.074 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 5674621699999
Q 001488 252 CFVSCKTTIDDIE 264 (1068)
Q Consensus 252 kFIsakdTId~I~ 264 (1068)
.|+.-...|..-|
T Consensus 50 ~f~keRa~IE~eY 62 (350)
T 3aco_A 50 NCLHERARIEKAY 62 (350)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999999999
No 8
>3m3w_A Pacsin3, protein kinase C and casein kinase II substrate P; mouse, BAR domain, endocytosis; 2.60A {Mus musculus} PDB: 3syv_A 3qe6_A
Probab=1.00 E-value=1 Score=13.61 Aligned_cols=13 Identities=8% Similarity=-0.135 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999897988999
Q 001488 422 RGLFEKCTLDHEA 434 (1068)
Q Consensus 422 ~~~le~~~~~~~~ 434 (1068)
...+++++..|..
T Consensus 147 ~~~l~kaKk~Y~~ 159 (320)
T 3m3w_A 147 LKEVEASKKSYHT 159 (320)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999998887999
No 9
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=1.00 E-value=1 Score=13.60 Aligned_cols=43 Identities=16% Similarity=0.150 Sum_probs=25.9
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHCC----CCCHHHHHHHHHHHHHHHH
Q ss_conf 762103883799999999632106----7631569999999999999
Q 001488 331 RGSISKGEFDLAVREYKKAKSIAL----PSHVNILKRVLEEVEKVMQ 373 (1068)
Q Consensus 331 ~~~I~~gdYd~aV~dY~kAk~L~~----~~~v~vf~kV~~EVE~ii~ 373 (1068)
|++.-.|+|+.++-.|..+..... .-.-+..+.=|..+-+.+.
T Consensus 20 Re~Al~GnYdta~~yY~g~~~qI~k~l~~~~d~~~r~kW~~~~~ei~ 66 (78)
T 2rpa_A 20 REYALLGNYDSAMVYYQGVLDQMNKYLYSVKDTHLRQKWQQVWQEIN 66 (78)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 99999659099999999999999999986689898876999999999
No 10
>2yxh_A MAZG-related protein; TM0360, LEFT-handed superhelix fold, structural genomics; 2.00A {Thermotoga maritima}
Probab=1.00 E-value=1 Score=13.56 Aligned_cols=77 Identities=14% Similarity=0.146 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHCC--CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 86999997321028--9988988988741258999999999999988303034499999999999999999853121034
Q 001488 821 NLIRTAATTFLLDS--GVQWGAAPAVKGVRDVAVELLHTLVAVHAEVFAGAKPLLDKTLGILVEGLIDTFLSLFDENQSN 898 (1068)
Q Consensus 821 ~~L~~~I~~gil~~--g~dW~~~p~P~~VRpYv~E~Ll~LV~VHAEV~sia~~Ll~rvLs~Lve~vaeelL~~F~~~~~~ 898 (1068)
..|..+| +.+ |++|.....|..+.+|+.| |+.-+...+-..-...+.+.+++-|+.+....
T Consensus 3 ~~l~~i~----lR~~~G~~W~~~qt~~~l~~~l~E----------E~~El~eai~~~d~~~l~eElGDlLf~vv~la--- 65 (116)
T 2yxh_A 3 ERLLEII----ERSLRKCPWLEKQSIETLLEALAS----------EIEEVAEAVKKNDLANLEEEIGDMIYDALLVA--- 65 (116)
T ss_dssp HHHHHHH----HHHHHHCHHHHTCCHHHHHHHHHH----------HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHH----CCCCCCCCCCCCCCHHHHHHHHHH----------HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH---
T ss_conf 8899998----548789899865699999999999----------99999999981899999999989999999999---
Q ss_pred CCC----CCCCHHHHHHHHH
Q ss_conf 455----4590026899856
Q 001488 899 NLK----SLDANGFCQLMLE 914 (1068)
Q Consensus 899 ~v~----~fs~~G~lQAtLD 914 (1068)
+.- .|+..-.++.+.+
T Consensus 66 ~~~~~~~~~d~e~al~~~~~ 85 (116)
T 2yxh_A 66 AVAQRDYGIDLESAIQKVVE 85 (116)
T ss_dssp HHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHH
T ss_conf 98727179999999999999
Done!