Query 001489
Match_columns 1068
No_of_seqs 473 out of 1420
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 02:06:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001489.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001489hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03202 protein argonaute; Pr 100.0 2E-170 4E-175 1587.9 87.2 829 194-1068 26-900 (900)
2 KOG1041 Translation initiation 100.0 6E-150 1E-154 1389.3 75.2 820 199-1068 43-876 (876)
3 KOG1042 Germ-line stem cell di 100.0 5E-126 1E-130 1063.0 53.9 722 206-1015 87-832 (845)
4 cd04657 Piwi_ago-like Piwi_ago 100.0 1E-100 2E-105 897.8 41.7 415 567-1013 1-426 (426)
5 cd04658 Piwi_piwi-like_Euk Piw 100.0 1.2E-93 2.6E-98 846.1 46.1 434 535-1010 2-447 (448)
6 cd02826 Piwi-like Piwi-like: P 100.0 5.1E-87 1.1E-91 775.6 41.8 381 580-1011 2-393 (393)
7 PF02171 Piwi: Piwi domain; I 100.0 4.3E-71 9.3E-76 623.8 26.1 294 698-1014 1-302 (302)
8 cd04659 Piwi_piwi-like_ProArk 100.0 3.2E-47 7E-52 445.0 26.5 273 694-1010 109-401 (404)
9 PF02170 PAZ: PAZ domain; Int 99.9 6.7E-23 1.4E-27 203.3 10.7 133 409-546 1-135 (135)
10 cd02846 PAZ_argonaute_like PAZ 99.8 1.9E-20 4.1E-25 180.2 13.6 113 409-522 2-114 (114)
11 cd02825 PAZ PAZ domain, named 99.8 4.1E-20 9E-25 177.6 11.9 112 408-522 1-115 (115)
12 cd02845 PAZ_piwi_like PAZ doma 99.7 4.1E-18 9E-23 163.2 9.4 106 409-523 2-115 (117)
13 PF08699 DUF1785: Domain of un 99.5 1.5E-14 3.3E-19 117.2 2.5 52 356-408 1-52 (52)
14 cd02844 PAZ_CAF_like PAZ domai 99.4 9.6E-14 2.1E-18 136.0 6.7 84 436-523 27-133 (135)
15 PF12764 Gly-rich_Ago1: Glycin 99.3 2.1E-11 4.6E-16 108.4 8.8 99 87-193 3-103 (104)
16 COG1431 Argonaute homolog, imp 99.1 3.1E-09 6.8E-14 121.6 18.1 300 639-1011 356-668 (685)
17 cd02843 PAZ_dicer_like PAZ dom 98.6 9.3E-08 2E-12 90.6 5.9 67 438-507 39-106 (122)
18 PF12764 Gly-rich_Ago1: Glycin 96.2 0.0051 1.1E-07 55.8 4.1 50 125-174 40-93 (104)
19 PTZ00146 fibrillarin; Provisio 94.8 0.05 1.1E-06 60.7 6.4 9 205-213 84-92 (293)
20 KOG1596 Fibrillarin and relate 93.9 0.23 5E-06 52.7 8.3 6 383-388 257-262 (317)
21 KOG1596 Fibrillarin and relate 93.4 0.34 7.4E-06 51.5 8.5 6 272-277 157-162 (317)
22 PF13032 DUF3893: Domain of un 87.7 0.98 2.1E-05 45.0 5.5 57 955-1015 66-122 (138)
23 COG4371 Predicted membrane pro 87.0 1.2 2.5E-05 47.4 5.7 17 165-181 155-171 (334)
24 KOG4307 RNA binding protein RB 85.8 8.1 0.00018 47.0 12.3 12 215-226 869-880 (944)
25 smart00157 PRP Major prion pro 78.9 9.8 0.00021 39.0 8.3 11 227-237 158-168 (217)
26 PRK11617 endonuclease V; Provi 78.4 28 0.00061 37.6 12.2 40 967-1013 178-217 (224)
27 PF05642 Sporozoite_P67: Sporo 70.2 79 0.0017 38.1 13.8 20 530-549 587-606 (727)
28 KOG3915 Transcription regulato 63.2 31 0.00066 40.2 8.6 12 225-236 182-193 (641)
29 PHA00370 III attachment protei 60.3 27 0.00058 37.7 7.0 7 309-315 256-262 (297)
30 PF08459 UvrC_HhH_N: UvrC Heli 56.6 24 0.00052 35.9 5.9 103 773-908 9-120 (155)
31 TIGR00194 uvrC excinuclease AB 53.1 74 0.0016 39.5 10.4 107 776-913 382-498 (574)
32 COG1515 Nfi Deoxyinosine 3'end 46.4 2.3E+02 0.0049 30.4 11.2 49 954-1009 163-211 (212)
33 PF04493 Endonuclease_5: Endon 45.8 54 0.0012 35.0 6.7 31 969-1006 175-206 (206)
34 cd06559 Endonuclease_V Endonuc 45.0 77 0.0017 34.0 7.7 34 967-1007 174-207 (208)
35 KOG3915 Transcription regulato 43.5 1E+02 0.0022 36.2 8.6 11 511-521 371-381 (641)
36 PRK14672 uvrC excinuclease ABC 41.0 1.7E+02 0.0037 36.9 10.8 107 773-911 452-564 (691)
37 KOG1924 RhoA GTPase effector D 36.9 1.3E+02 0.0029 37.7 8.7 23 203-226 627-649 (1102)
38 PRK12306 uvrC excinuclease ABC 36.5 2.3E+02 0.0049 34.8 10.9 105 774-912 365-476 (519)
39 KOG0037 Ca2+-binding protein, 34.1 85 0.0018 33.5 5.8 8 342-349 161-168 (221)
40 PRK14667 uvrC excinuclease ABC 31.9 2.6E+02 0.0057 34.7 10.5 104 774-911 360-470 (567)
41 PF05642 Sporozoite_P67: Sporo 30.1 1.1E+03 0.024 28.9 14.6 13 638-650 590-602 (727)
42 KOG3875 Peroxisomal biogenesis 29.7 1.8E+02 0.0039 32.7 7.6 17 510-526 318-334 (362)
43 PLN03138 Protein TOC75; Provis 29.7 39 0.00084 43.1 2.9 20 510-529 364-384 (796)
44 KOG1924 RhoA GTPase effector D 29.6 1.9E+02 0.0042 36.4 8.4 11 338-348 699-709 (1102)
45 PRK14670 uvrC excinuclease ABC 28.9 3.8E+02 0.0082 33.4 11.1 107 774-910 357-470 (574)
46 PF04094 DUF390: Protein of un 28.7 2.5E+02 0.0055 35.1 9.2 10 891-900 795-804 (828)
47 cd01457 vWA_ORF176_type VWA OR 27.4 2.8E+02 0.0061 29.0 8.7 69 830-903 78-151 (199)
48 PRK12330 oxaloacetate decarbox 26.8 5.4E+02 0.012 31.5 11.7 58 694-754 138-198 (499)
49 PF05297 Herpes_LMP1: Herpesvi 24.4 25 0.00055 38.6 0.0 120 12-131 240-374 (381)
50 KOG3123 Diphthine synthase [Tr 23.2 95 0.0021 32.8 3.8 48 694-746 130-177 (272)
51 PRK14671 uvrC excinuclease ABC 23.1 4.1E+02 0.0089 33.5 10.1 105 774-912 414-525 (621)
52 PF09373 PMBR: Pseudomurein-bi 22.6 88 0.0019 23.0 2.6 20 841-860 14-33 (33)
53 PLN03138 Protein TOC75; Provis 22.1 65 0.0014 41.1 2.9 12 799-810 642-653 (796)
54 PRK14666 uvrC excinuclease ABC 21.8 4.7E+02 0.01 33.2 10.1 98 774-903 471-571 (694)
55 PF07555 NAGidase: beta-N-acet 21.5 8E+02 0.017 28.0 11.2 105 646-755 18-147 (306)
56 PRK00558 uvrC excinuclease ABC 21.1 5.7E+02 0.012 32.1 10.8 98 774-904 382-486 (598)
57 KOG4211 Splicing factor hnRNP- 20.2 2.9E+02 0.0062 33.1 7.3 73 21-94 356-428 (510)
No 1
>PLN03202 protein argonaute; Provisional
Probab=100.00 E-value=1.6e-170 Score=1587.90 Aligned_cols=829 Identities=38% Similarity=0.652 Sum_probs=704.9
Q ss_pred CCCCCccCCCCCCCCCCCCcceEEeeeEEeecC--CCceeeeEEEEcCC----cccchhhHHHHHHHHHHHHhhccCCcc
Q 001489 194 PSSKSVRFPLRPGRGSTGTRCIVKANHFFAELP--DKDLHQYDVTITPE----VTSRGVNRAVMEQLVKLYRESHLGKRL 267 (1068)
Q Consensus 194 ~s~~~~~~p~RP~~Gt~G~~v~l~aN~f~v~~~--~~~iy~YdV~i~pe----~~~k~~~r~i~~~l~~~~~~~~~~~~~ 267 (1068)
+..+...+|+||+|||.|++|.|+||||+|+++ +..||||||+|+|+ +.+++++++|++++++++... +.+..
T Consensus 26 ~~~~~~~~~~RPg~Gt~G~~i~l~aN~f~v~~~~~~~~ly~Y~V~i~p~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~ 104 (900)
T PLN03202 26 PSKPKRLPMARRGFGSKGQKIQLLTNHFKVSVNNPDGHFFHYSVSLTYEDGRPVDGKGIGRKVIDKVQETYSSD-LAGKD 104 (900)
T ss_pred ccccccccCCCCCCCCCCCEEEEEeeEEEEeccCCCCcEEEEEEEeccCCCCcccchhhhHHHHHHHHHhhHHh-hCCCc
Confidence 344455788999999999999999999999974 67899999999963 445778899999998876443 44446
Q ss_pred ceeecCceEEecCCCCCCcceEEEEEecCCCC------------CC---------CCCCCcEEEEEEEEeeeeChhhHHH
Q 001489 268 PAYDGRKSLYTAGPLPFLSKEFRITLLDDDDG------------QG---------GQRREREFKVVIKLAARADLHHLGL 326 (1068)
Q Consensus 268 ~~yDG~~~lys~~~Lp~~~~~~~v~~~~~~~~------------~~---------~~~~~~~~~V~I~~~~~~~l~~l~~ 326 (1068)
+||||+++|||+.+||++..+|.|++.++++. .. ...+.+.|+|+|++++++++.+|.+
T Consensus 105 ~~~Dg~~~l~s~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~i~~~~L~~ 184 (900)
T PLN03202 105 FAYDGEKSLFTVGALPQNKLEFTVVLEDVSSNRNNGNGSPVGNGSPNGGDRKRSRRPYQSKTFKVEISFAAKIPMQAIAN 184 (900)
T ss_pred eeecCccceEECccCCCCCceEEEEecccccccccccccccccCCccccccccccccCCCceEEEEEEEccccCHHHHHH
Confidence 79999999999999998777788877643111 00 0124688999999999999999999
Q ss_pred HhccCCCCChHHHHHHHHHHHccCCCCC-ccccCccccCCCCCCcccCCCCeEEEeeceeeecccCCeeEEeeecceeee
Q 001489 327 FLQGRQADAPQEALQVLDIVLRELPTTR-YCPVGRSFYSPDLGRRQPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAF 405 (1068)
Q Consensus 327 ~l~~~~~~~~~~~iq~Lniilr~~~~~~-~~~~Gr~ff~~~~~~~~~lg~gle~~~G~~~Svr~~~~~l~LniDvs~~~F 405 (1068)
||.+.....+.++||+||||||+.++.. ++.+||+||+++.....+++.|+|+|+||++|||+++++|+||||+++++|
T Consensus 185 ~l~~~~~~~~~~~iq~lnivlr~~~~~~~~~~~gr~ff~~~~~~~~~l~~gle~~~G~~~Svr~~~~~l~LnvDvs~~~F 264 (900)
T PLN03202 185 ALRGQESENSQDALRVLDIILRQHAAKQGCLLVRQSFFHNDPKNFVDLGGGVLGCRGFHSSFRTTQGGLSLNIDVSTTMI 264 (900)
T ss_pred HHcCCCCCCcHHHHHHHHHHHhhhhhhCCCceeccccCCCCCcccccCCCceEEeeeeeeEeeeccCceEEeeeeeeeee
Confidence 9999887788999999999999988765 889999999865444567899999999999999999999999999999999
Q ss_pred ecCccHHHHHHHHhcCCCCCCCCChHHHHHHHHHhcCcEEEEeecCCCCceEEEeccCCCCCCceeeeecCC--------
Q 001489 406 IEPLPVIDFVQQLLNRDVSSRPLSDADRVKIKKALRGVRVEVTHRGNMRRKYRISGLTSQTTGELTFPVDES-------- 477 (1068)
Q Consensus 406 ~~~~~l~d~i~~~~~~~~~~~~~~~~~~~~l~~~L~gl~V~~~~~~~~~r~~~I~~i~~~~a~~~~F~~~~~-------- 477 (1068)
|++++|+|+|.++.+..+ ....++.++.++|+|++|.++|+ +++|+|.+|++.++++.+|++++.
T Consensus 265 ~~~~~l~~~l~~~~~~~~----~~~~~~~~~~~~lkGl~V~t~~~---~k~yrI~~i~~~~a~~~~F~~~~~~~~~~~~~ 337 (900)
T PLN03202 265 VQPGPVVDFLIANQNVRD----PFQIDWSKAKRMLKNLRVKVSPS---NQEYKITGLSEKPCKEQTFSLKQRNGNGNEVE 337 (900)
T ss_pred ecCCcHHHHHHHhcCcCC----ccchhHHHHHHHhcCCEEEEecC---CceEEEeeccCCCCcceEEEcccCCcccccCC
Confidence 999999999998764322 11234567999999999999998 579999999999999999986521
Q ss_pred CcEeeHHHHHHHHcCCccCCC-CCceEEeccCCCCccccccceEeccCccccccCCHHHHHHHHHHhcCCchHHHHHHHH
Q 001489 478 GTLKSVVEYFYETYGFVIQHT-QWPCLQVGNQQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPHERERDIMQ 556 (1068)
Q Consensus 478 g~~iSV~~Yf~~~Y~i~L~~p-~lP~v~~g~~~~~~ylP~Elc~i~~gQ~~~~kl~~~q~~~mik~a~~~P~~R~~~I~~ 556 (1068)
+++|||+|||+++|||+|+|| +||||++|+.++++|||||||.|++||+++++|++.|+++||++|+.+|.+|.+.|.+
T Consensus 338 ~~~iSv~dYfk~~Yni~l~~p~~lPlv~~g~~~~~~ylP~ElC~i~~~Q~~~~~l~~~q~~~mik~a~~~P~~R~~~i~~ 417 (900)
T PLN03202 338 TVEITVYDYFVKHRGIELRYSGDLPCINVGKPKRPTYFPIELCSLVSLQRYTKALSTLQRSSLVEKSRQKPQERMKVLTD 417 (900)
T ss_pred cceEEHHHHHHHHcCccccCCCCCCEEEcCCCCCCeEEcceeeEccCCceechhCCHHHHHHHHHHHccCHHHHHHHHHH
Confidence 358999999999999999996 9999999998889999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCCccccccceEEcccceEEeeEEcCCCceeecCCCCccccCCcCcceeccCceeeeCceeceeEEEEecCCc
Q 001489 557 TVHHNAYHEDPYAREFGIKISEKLASVEARILPAPWLKYHDTGKEKDCLPQVGQWNMMNKKMVNGGTVNHWICINFSRHV 636 (1068)
Q Consensus 557 ~~~~~~~~~~~~l~~fGi~i~~~~~~v~grvL~~P~i~y~~~~~~~~~~p~~G~Wnl~~~kf~~~~~l~~W~vv~~~~~~ 636 (1068)
+++.++++.+++|++|||+|+++|++|+|||||+|+|.|+++. .+.|.+|+|||++++|++++.+++|+||+|+++
T Consensus 418 ~~~~~~~~~~~~l~~fGi~i~~~~~~V~gRvL~~P~I~y~~~~---~~~p~~g~Wn~~~~kf~~~~~l~~W~vv~~~~~- 493 (900)
T PLN03202 418 ALKSSNYDADPMLRSCGISISSQFTQVEGRVLPAPKLKVGNGE---DFFPRNGRWNFNNKKLVEPTKIERWAVVNFSAR- 493 (900)
T ss_pred HHHHhCCCCchHHHHCCcEecCCceEEeEEEcCCceeecCCCc---ccCCCCCceecCCCEecCCCccceEEEEEecCc-
Confidence 9988888888999999999999999999999999999998743 245789999999999999999999999988654
Q ss_pred chHHHHHHHHHHHHHHHhcCcccCCCCcccCCCCC--hhhHHHHHHHHHHHHHhhccCCCCceEEEEEeeCC-CCchhhh
Q 001489 637 QDSIARGFCFELAQMCYISGMAFNPEPVIPPISAR--PEHVEKVLKTRYHDAMTKLGQGKELDLLIVILPDN-NGSLYGD 713 (1068)
Q Consensus 637 ~~~~~~~f~~~L~~~~~~~Gm~i~~~p~~~~~~~~--~~~~~~~l~~~~~~a~~~~~~~~~~~lvlvilp~~-~~~~Y~~ 713 (1068)
..++.|++.|.+.|+.+||.+..++.+.....+ ....+..++..++.+.++++ ..++|||||||++ +.++|+.
T Consensus 494 --~~~~~f~~~l~~~~~~~G~~i~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~qlv~vIlp~~~~~~~Y~~ 569 (900)
T PLN03202 494 --CDIRHLVRDLIKCGEMKGINIEPPFDVFEENPQFRRAPPPVRVEKMFEQIQSKLP--GPPQFLLCILPERKNSDIYGP 569 (900)
T ss_pred --hhHHHHHHHHHHHHHHCCceeCCCccccccccccccccchHHHHHHHHHHHHhcc--CCCeEEEEEEcCCCCcchHHH
Confidence 257899999999999999999764322111110 01112334555554444332 4689999999974 6789999
Q ss_pred hhhhhhcccCceeeeeeccccccccHHHHHHHHHHHHhhcCCcccccccccccCCCccCCCCeEEEEEEecCCCCCCCCC
Q 001489 714 LKRICETDLGLVSQCCLTKHVFKMSKQYMANVALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSS 793 (1068)
Q Consensus 714 IK~~~d~~~GI~TQcv~~~~~~k~~~q~~~Ni~lKiN~KlGG~n~~l~~~~~~~~p~~~~~~tmiiG~DV~Hp~~g~~~~ 793 (1068)
||++||+++||+||||... +.++||++|||||||+||||+||.+..+....+|++.+.+|||||+||+||+++....
T Consensus 570 IK~~~~~~~gV~TQcv~~~---~~~~q~~~NIalKiN~KLGG~n~~~~~~~~~~i~~~~~~~tMivG~DVtHp~~g~~~~ 646 (900)
T PLN03202 570 WKKKNLSEFGIVTQCIAPT---RVNDQYLTNVLLKINAKLGGLNSLLAIEHSPSIPLVSKVPTIILGMDVSHGSPGQSDV 646 (900)
T ss_pred HHHHHhhccCcccEEeCcc---ccchHHHHHHHHHHhhhhCCcceeecccccccCccccCCCeEEEEEEeecCCCCCCCC
Confidence 9999999999999999654 3478999999999999999999998765445578888889999999999999986557
Q ss_pred CeeEe-----cCCCcceeeeEEEEccCCchhhhhhhccccCCCcCcchhHHHHHHHHHHHHHc-CCCCceEEEEecCCCh
Q 001489 794 PSIAA-----DWPEVTKYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISFRRAT-GQKPQRIIFYRDGVSE 867 (1068)
Q Consensus 794 pSiaa-----d~~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~p~~~~~~~~mi~~~L~~f~~~~-~~~P~~IIiYRDGVSE 867 (1068)
||||| ||+.+++|++.+++|.+++|+|++|+....+ ..+++||+++|+.|++.+ +.+|++||||||||||
T Consensus 647 pSiaa~VaS~d~~~~~~y~s~~~~Q~~~~E~i~~l~~~~~~----~~~~~m~~~~L~~~~~~~~~~~P~~IiiyRDGVse 722 (900)
T PLN03202 647 PSIAAVVSSRQWPLISRYRASVRTQSPKVEMIDSLFKPVGD----KDDDGIIRELLLDFYTSSGKRKPEQIIIFRDGVSE 722 (900)
T ss_pred CceEEEEeccCcccccceeeEEEecCCCceeeeehhccccc----cchHHHHHHHHHHHHHHcCCCCCceeEEEecCCCH
Confidence 99888 7778999999999999999999988533222 235899999999999875 6899999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEEeecccccccccCCCCCCCCCCCCCCccceeecccccCCCcCceeec
Q 001489 868 GQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLC 947 (1068)
Q Consensus 868 gQ~~~Vl~~El~~I~~a~~~~~~~y~P~it~Ivv~KrhhtRff~~~~~~~~~~~~~~N~~pGTVVD~~It~p~~~DFyL~ 947 (1068)
|||.+|+++||++|++||++++++|+|+||||||+||||||||+.+ +.+||+||||||++||||.+||||||
T Consensus 723 GQ~~~Vl~~Ev~~i~~a~~~~~~~~~Pkit~Ivv~Krh~tRff~~~--------~~~N~~pGTvVD~~it~p~~~dFyL~ 794 (900)
T PLN03202 723 SQFNQVLNIELDQIIEACKFLDESWSPKFTVIVAQKNHHTKFFQAG--------SPDNVPPGTVVDNKICHPRNNDFYMC 794 (900)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEEeccceeeeeccC--------CCCCCCCceEeccccccCCcceEEEe
Confidence 9999999999999999999998899999999999999999999863 35899999999999999999999999
Q ss_pred cccCccccccCceEEEEecCCCCCHHHHHHHHHHhhccccccCCCccccchhHHHHHHHHHhhhhcCcccCCCCCcccCC
Q 001489 948 SHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSMTSGT 1027 (1068)
Q Consensus 948 Sh~~~qGTarPthY~VL~De~~~~~d~Lq~LT~~LCy~y~r~t~sVSip~P~yYA~l~a~Rar~~~~~~~~d~~s~~~~~ 1027 (1068)
||.++|||||||||+||+||+++++|+||+|||+|||+|+|||++||||||||||||+|+|||+||..+.++++++++++
T Consensus 795 Sh~~~qGTarPthY~Vl~de~~~~~d~lq~lty~lc~~y~~~t~~VsvpaP~yYAhlla~r~r~~l~~~~~~~~~~~~~~ 874 (900)
T PLN03202 795 AHAGMIGTTRPTHYHVLLDEIGFSADDLQELVHSLSYVYQRSTTAISVVAPVCYAHLAAAQMGQFMKFEDMSETSSSHGG 874 (900)
T ss_pred cccccccCCcCceEEEEECCCCCCHHHHHHHHHHHhhhhcccCCceecchhHHHHHHHHHHhhhhccccCCccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999985432222211111
Q ss_pred CCCCCCCCCCCCccCCCCCCCCCCCCCcccccccccCeeeC
Q 001489 1028 IGRGGMGGGVGARSTRGPGVGAAVRPLPALKENVKRVMFYC 1068 (1068)
Q Consensus 1028 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vh~~~~~~M~y~ 1068 (1068)
+++ + ...+...+++||+||+++||||
T Consensus 875 ~~~-----------~----~~~~~~~~~~~h~~~~~~Mfy~ 900 (900)
T PLN03202 875 ITS-----------A----GAVPVPELPRLHENVASSMFFC 900 (900)
T ss_pred cCC-----------C----CccccccccccchhhcCCeeeC
Confidence 100 0 0111235788999999999998
No 2
>KOG1041 consensus Translation initiation factor 2C (eIF-2C) and related proteins [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6e-150 Score=1389.26 Aligned_cols=820 Identities=40% Similarity=0.630 Sum_probs=698.8
Q ss_pred ccCCCCCCCCCCCCcceEEeeeEEeec--CCCc-eeeeEEEEcCCcccchhhH-HHHHHHHHHHHhhccCCccceeecCc
Q 001489 199 VRFPLRPGRGSTGTRCIVKANHFFAEL--PDKD-LHQYDVTITPEVTSRGVNR-AVMEQLVKLYRESHLGKRLPAYDGRK 274 (1068)
Q Consensus 199 ~~~p~RP~~Gt~G~~v~l~aN~f~v~~--~~~~-iy~YdV~i~pe~~~k~~~r-~i~~~l~~~~~~~~~~~~~~~yDG~~ 274 (1068)
...+.||+.|+.|++|.|.||||.+++ ++.. ++||+|++.++..++.+++ .+++.+++......+....++|||++
T Consensus 43 ~~~~~rp~~~~~g~~i~~~~n~f~~~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~YDg~~ 122 (876)
T KOG1041|consen 43 RFPMNRPGGGTKGKKIMVLVNHFKVDLKFTEESLFVHYSVGIFNEHGRRKVQCLRFFLDKVKNPELFELKSGGPAYDGQK 122 (876)
T ss_pred cccccCCCCCccceEEEEeeeEEEeccccCCcceEEEeeeeecCCCCchHHHHHHHHHHHHhccccccccCCcccccCCc
Confidence 455679999999999999999999766 4555 9999999999988777764 56665555443333555566799999
Q ss_pred eEEecCCCCCCcceEEEEEecCCCCCCCCCCCcEEEEEEEEeeeeChhhHHHHhccCCCCChHHHHHHHHHHHccCCCCC
Q 001489 275 SLYTAGPLPFLSKEFRITLLDDDDGQGGQRREREFKVVIKLAARADLHHLGLFLQGRQADAPQEALQVLDIVLRELPTTR 354 (1068)
Q Consensus 275 ~lys~~~Lp~~~~~~~v~~~~~~~~~~~~~~~~~~~V~I~~~~~~~l~~l~~~l~~~~~~~~~~~iq~Lniilr~~~~~~ 354 (1068)
+|||..+|+....++.+.+..+.+ .. .|+++|++.+.+.+..+..++.+.....+.+++|+||+++++.++..
T Consensus 123 ~lyt~~~~~~~~~~~~~~~~~~~~------~~-~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~s~~ 195 (876)
T KOG1041|consen 123 TLYTKLELPEGVVTLDFDVISPKE------WK-KFKVSIKKVSEVVLTKLNGFIYTRGENAPRDANQTLDVVLREIATSQ 195 (876)
T ss_pred eeEeccccccccceEEEEecCCCC------Cc-ceEEEEEecccccccCccccccCccccCchhHHHHHHHHHHhhhchh
Confidence 999977777423333333322211 11 19999999999889899999988877889999999999999999887
Q ss_pred -ccccCccccCCCCCCcccCCCCeEEEeeceeeecccCCeeEEeeecceeeeecCccHHHHHHHHhcCCCCCCCCChHHH
Q 001489 355 -YCPVGRSFYSPDLGRRQPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVQQLLNRDVSSRPLSDADR 433 (1068)
Q Consensus 355 -~~~~Gr~ff~~~~~~~~~lg~gle~~~G~~~Svr~~~~~l~LniDvs~~~F~~~~~l~d~i~~~~~~~~~~~~~~~~~~ 433 (1068)
+..++++||.........+++|.|+|.||++|+|+++++++||+|+++++||++.+|+++++++++... +.+.+...
T Consensus 196 ~~~~~~~sff~~~~~~~~~l~~g~e~~~Gf~~s~r~~~~~~~l~id~~~~~F~k~~~~~~~l~~~~~~~~--~~~~~~~~ 273 (876)
T KOG1041|consen 196 GLNNVGYSFFGNDTREPAKLGGGVEIWEGFHKSIRPTQGGLSLNIDVKTTAFYKGTPVIEFLKKILEIKT--RAFHKDRP 273 (876)
T ss_pred cccccchheecCCCCCccccCCCceeeeeeeeeeeeccCceEEeeeeeeeeeecCcchHHHHHhhhcCcc--cccccccc
Confidence 999999999863333455899999999999999999999999999999999999999999999987543 22222222
Q ss_pred HHHHHHhcCcEEEEeecCCCCceEEEeccCCCCCCceeeeecCC-CcEeeHHHHHHHHcCCccCCCCCceEEeccCCCCc
Q 001489 434 VKIKKALRGVRVEVTHRGNMRRKYRISGLTSQTTGELTFPVDES-GTLKSVVEYFYETYGFVIQHTQWPCLQVGNQQRPN 512 (1068)
Q Consensus 434 ~~l~~~L~gl~V~~~~~~~~~r~~~I~~i~~~~a~~~~F~~~~~-g~~iSV~~Yf~~~Y~i~L~~p~lP~v~~g~~~~~~ 512 (1068)
..++++|+||+|+++| ++.+|.|+|.+|+..++.+++|++++. +.++||+|||+++||++|+||+||||++|...+.+
T Consensus 274 ~~~~~~lkgL~v~~~h-~~~~r~~~i~~l~~~~a~~~~F~l~~~~~~~~tV~~Yf~~ky~~~Lkyp~LPcv~v~~~~~~~ 352 (876)
T KOG1041|consen 274 LDIKKALKGLKVYVTH-GKRKRKIKIMGLSKKPAKNTTFELKDKKGREITVADYFLEKYNITLKYPDLPCVVVKRPKREN 352 (876)
T ss_pred hhHHHHhhCcEEEEec-ccCcceEEEecccCCcccCceeeccCCCceEEeHHHHHHHhcCccccCCCCccEeecCCCCCc
Confidence 3389999999999999 566899999999999999999997654 58899999999999999999999999999999999
Q ss_pred cccccceEeccCccccc-cCCHHHHHHHHHHhcCCchHHHHHHHHHHHhccCCCCccccccceEEcccceEEeeEEcCCC
Q 001489 513 YLPMEVCKIVEGQRYSK-RLNERQITALLKVTCQRPHERERDIMQTVHHNAYHEDPYAREFGIKISEKLASVEARILPAP 591 (1068)
Q Consensus 513 ylP~Elc~i~~gQ~~~~-kl~~~q~~~mik~a~~~P~~R~~~I~~~~~~~~~~~~~~l~~fGi~i~~~~~~v~grvL~~P 591 (1068)
|+|||+|.|++||++.+ +|++.|+++|++.+++.|++|.+.|.++++...++.|++|++|||+|.++|+.|+|||||+|
T Consensus 353 ~~PmElc~i~~gQr~~k~kl~~~q~~~m~k~~~~~P~~R~~~i~~~~~~~~~~~d~~l~~fGi~i~~~~~~v~grvL~~P 432 (876)
T KOG1041|consen 353 FYPMELCNIVPGQRITKEKLTPNQQSAMIKASAVKPDQRQKLIKKVLKSSLKLSNPYLKEFGIIVVSEPTQVEGRVLPPP 432 (876)
T ss_pred ccchhheecccCceeecccCCHHHHHHhhhhhcCCHHHHHHHHHHHHHHhccccchhHHhcCeEEecccccccccccCCc
Confidence 99999999999999998 99999999999999999999999999999988888899999999999999999999999999
Q ss_pred ceeecCCCCccccCCcCcceeccCceeeeCceeceeEEEEecCCcchHHHHHHHHHHHHHHHhcCcccCCCCcccCCCCC
Q 001489 592 WLKYHDTGKEKDCLPQVGQWNMMNKKMVNGGTVNHWICINFSRHVQDSIARGFCFELAQMCYISGMAFNPEPVIPPISAR 671 (1068)
Q Consensus 592 ~i~y~~~~~~~~~~p~~G~Wnl~~~kf~~~~~l~~W~vv~~~~~~~~~~~~~f~~~L~~~~~~~Gm~i~~~p~~~~~~~~ 671 (1068)
+|.|+++ .....|..|.|++++++|++|+.+..|+|++|....+... +.|+++|++.|+..||.|.. |. .....
T Consensus 433 ~L~~~~~--~~~~~p~~g~~~~~~k~~~~~~~i~~wavv~f~~~~~~~~-~~f~~~L~~~c~~~Gm~i~~-~~--~~~~~ 506 (876)
T KOG1041|consen 433 KLKFGGN--EMPKNPTPGTWFMRNKKFVKPAKIKSWAVVNFSNSETLRQ-KQFVDELIKICKDKGMEIKR-PR--KWAPT 506 (876)
T ss_pred eeeccCC--CCccCCCcCccccccCcccccceEEEEEEEEecccccccH-HHHHHHHHHHHHHcCccccc-cc--ccCcc
Confidence 9999985 3345688999999999999999999999999976554444 89999999999999999976 55 22111
Q ss_pred hhhHHHHHHHHHHHHHhhccCCCCceEEEEEeeCCCCchhhhhhhhhhcccCceeeeeeccccccccHHHHHHHHHHHHh
Q 001489 672 PEHVEKVLKTRYHDAMTKLGQGKELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYMANVALKINV 751 (1068)
Q Consensus 672 ~~~~~~~l~~~~~~a~~~~~~~~~~~lvlvilp~~~~~~Y~~IK~~~d~~~GI~TQcv~~~~~~k~~~q~~~Ni~lKiN~ 751 (1068)
...++..++. ....++....++||+||+++++.++|+.||+++|+.+||+||||+.+++.|..+||++||+||||+
T Consensus 507 ~~~~~~~~~~----~~~~~~~~~~~~li~~I~~~k~~~vy~~lK~~e~t~~gi~tQc~~~~~~~k~~~qtl~Nl~lKiN~ 582 (876)
T KOG1041|consen 507 EESLEDMITE----KSSMEKAAAGVQLVFIILPEKNPDVHDELKYIEETVGGLTTQCIRPTTAKKMSPQTLANLILKINV 582 (876)
T ss_pred cchhHHHHHH----HHhhhccCCCceEEEEEECCCCcchhHHHHHHHHHhcCceeEEeecchhcccchHHHHHHHHHHhh
Confidence 2233333322 222221125699999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCcccccccccccCCCccCCCCeEEEEEEecCCCCCCCC--CCeeEe-----cCCCcceeeeEEEEccCCchhhhhhh
Q 001489 752 KVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDS--SPSIAA-----DWPEVTKYAGLVCAQAHRQELIQDLF 824 (1068)
Q Consensus 752 KlGG~n~~l~~~~~~~~p~~~~~~tmiiG~DV~Hp~~g~~~--~pSiaa-----d~~~~~~y~~~~~~Q~~~~E~i~~l~ 824 (1068)
||||+|+.|.++....+| +.+.||||||+|||||+++... .||||| || +.++|.+.+++|.+++|+|+++
T Consensus 583 KlGG~N~~l~~~~~~~~~-~~~~ptl~IG~dVsHp~~~~~~~~~PSiagvv~s~~~-~~~~y~g~~~~Q~~r~e~i~~~- 659 (876)
T KOG1041|consen 583 KLGGLNYVLVSPRSSRGP-KLDSPTLFIGFDVSHPAAGTSFDGNPSIVGVVYNLDW-HPQKFAGFVRFQKSRQEVIQDL- 659 (876)
T ss_pred ccCceeeEEecccccCcc-cCCCCeEEEEEeeeCCCcCCCcCCCccEEEEEecccc-cchhhcceEEEecCChhhhcch-
Confidence 999999988876444344 4578999999999999998754 599998 87 9999999999999999999984
Q ss_pred ccccCCCcCcchhHHHHHHHHHHHHHcCCCCceEEEEecCCChhHHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEEeec
Q 001489 825 KTWQDPVRGAVSGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKR 904 (1068)
Q Consensus 825 ~~~~~p~~~~~~~~mi~~~L~~f~~~~~~~P~~IIiYRDGVSEgQ~~~Vl~~El~~I~~a~~~~~~~y~P~it~Ivv~Kr 904 (1068)
.+|+.++|..|+++++.+|++|||||||||||||.+|+++|+.+||+||..+.++|+|+||||||+||
T Consensus 660 ------------~~~~~~~l~~f~~~t~~~P~~IIiyRdGvSEgqf~~vl~~E~~~ir~a~~~~~~~y~P~it~Iv~qKr 727 (876)
T KOG1041|consen 660 ------------GEMIRELLRSFRKSTRKLPDRIVIYRDGVSEGQFSMVLEEELRAIKEACKKLQEGYNPKITVIVAQKR 727 (876)
T ss_pred ------------HHHHHHHHHHHHHhccCCCceEEEEecCCccchHHHHHHHHHHHHHHHHHHhCCCCCCceEEEEEEcc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCCCCCCCCCCCCCccceeecccccCCCcCceeeccccCccccccCceEEEEecCCCCCHHHHHHHHHHhhc
Q 001489 905 HHTRLFANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCY 984 (1068)
Q Consensus 905 hhtRff~~~~~~~~~~~~~~N~~pGTVVD~~It~p~~~DFyL~Sh~~~qGTarPthY~VL~De~~~~~d~Lq~LT~~LCy 984 (1068)
||||||+.+..+ +..++..|++||||||+.||||.++|||||||.++|||||||||||||||++|++|+||+|||+|||
T Consensus 728 HhtR~F~~~~~~-~~~~~~~Nv~pGT~VD~~It~p~~~dFyL~sh~g~qGTsrp~~Y~VL~dd~~~~~d~lq~lt~~Lc~ 806 (876)
T KOG1041|consen 728 HHTRLFAAELSK-DGKAQSQNVPPGTVVDTTITSPGYFDFYLCSHHGLQGTSKPTHYTVLYDDIGFSKDELQKLTYALCF 806 (876)
T ss_pred cceeeecccCCC-CccCCccCCCCCCEecccccCCCcceEEEeccCcccccccCceEEEEeCCCCCCHHHHHHHHHHHhh
Confidence 999999998762 2256789999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCccccchhHHHHHHHHHhhhhcCcccCCCCCcccCCCCCCCCCCCCCCccCCCCCCCCCCCCCcccccccccC
Q 001489 985 TYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSMTSGTIGRGGMGGGVGARSTRGPGVGAAVRPLPALKENVKRV 1064 (1068)
Q Consensus 985 ~y~r~t~sVSip~P~yYA~l~a~Rar~~~~~~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vh~~~~~~ 1064 (1068)
+|+|||++||||+|+||||++|+|||.|.+....+.+...++.+. . ......+..++++|+++.++
T Consensus 807 ~~qr~t~pvSiP~P~YyA~~~A~Rgr~~~~~~~~~~~~~~~~~s~------------~--~~~~~~~~~~~~~~~~~~~~ 872 (876)
T KOG1041|consen 807 THQRCTKPVSLPAPLYYAHEVAKRGRNNYKEHLREKNSSAIYQSI------------V--DLDALNSEEGYKEKAGLFGT 872 (876)
T ss_pred heeeecCCCcCCchHHHHHHHHHHhhhhhhhhccccCCCcccccc------------c--ccchhhhhhHHHhhhcccce
Confidence 999999999999999999999999999832222222221111110 0 01122245578999999999
Q ss_pred eeeC
Q 001489 1065 MFYC 1068 (1068)
Q Consensus 1065 M~y~ 1068 (1068)
||||
T Consensus 873 ~f~a 876 (876)
T KOG1041|consen 873 RFNA 876 (876)
T ss_pred EEeC
Confidence 9998
No 3
>KOG1042 consensus Germ-line stem cell division protein Hiwi/Piwi; negative developmental regulator [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=4.9e-126 Score=1062.99 Aligned_cols=722 Identities=26% Similarity=0.429 Sum_probs=624.8
Q ss_pred CCCCCCCcceEEeeeEEeec-CCCceeeeEEEEcCCcccchhhHHHHHHHHHHHHhhccCCccceeecCceEEecCCCCC
Q 001489 206 GRGSTGTRCIVKANHFFAEL-PDKDLHQYDVTITPEVTSRGVNRAVMEQLVKLYRESHLGKRLPAYDGRKSLYTAGPLPF 284 (1068)
Q Consensus 206 ~~Gt~G~~v~l~aN~f~v~~-~~~~iy~YdV~i~pe~~~k~~~r~i~~~l~~~~~~~~~~~~~~~yDG~~~lys~~~Lp~ 284 (1068)
..|+.|.+|+|.||||++.. +++.||||+|+|.|++++++++++++. .|.+. +|. ..+|||. .||+.++|..
T Consensus 87 KtGssG~pv~l~tN~f~l~t~p~w~iyqYhVef~P~ves~rlR~~~L~----~h~~l-ig~-~~~FDG~-iLfl~~k~eq 159 (845)
T KOG1042|consen 87 KTGSSGIPVKLQTNFFRLMTRPDWSIYQYHVEFEPDVESRRLREALLY----NHTDL-IGK-GYAFDGT-ILFLKEKFEQ 159 (845)
T ss_pred ccCCCCceEEEEeceeeeccCCCcEEEEEEEeeccccccHHHHHHHHH----HhHhh-hcc-ceeecce-eehhhHHHhh
Confidence 56999999999999999876 589999999999999999988777765 34332 443 4589996 8999998854
Q ss_pred CcceEEEEEecCCCCCCCCCCCcEEEEEEEEeeeeChhhHHHHhccCCCCChHHHHHHHHHHHcc-CCCCCccccCcccc
Q 001489 285 LSKEFRITLLDDDDGQGGQRREREFKVVIKLAARADLHHLGLFLQGRQADAPQEALQVLDIVLRE-LPTTRYCPVGRSFY 363 (1068)
Q Consensus 285 ~~~~~~v~~~~~~~~~~~~~~~~~~~V~I~~~~~~~l~~l~~~l~~~~~~~~~~~iq~Lniilr~-~~~~~~~~~Gr~ff 363 (1068)
+..+. + ..+++...++|+||+++++.. +++++||++|+|+|. +..+++.++||+||
T Consensus 160 ~~tel---~-------~ks~~ge~i~I~ik~~~~~~~-------------t~p~~iqv~NlI~RR~~k~L~L~qigRnyy 216 (845)
T KOG1042|consen 160 KQTEL---V-------SKSRDGELIKITIKLTNELPS-------------TDPQCIQVFNLILRRSMKGLNLTQIGRNYY 216 (845)
T ss_pred hhhee---e-------cccCCCceEEEEEEEeccccC-------------CChhHHHHHHHHHHHHHhhccHHHhhhccC
Confidence 32111 1 124567789999999988743 457899999999998 45678999999999
Q ss_pred CCCCCCcccC-CCCeEEEeeceeeecccCCeeEEeeecceeeeecCccHHHHHHHHhcCCCCCCCCChHHHHHHHHHhcC
Q 001489 364 SPDLGRRQPL-GEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVQQLLNRDVSSRPLSDADRVKIKKALRG 442 (1068)
Q Consensus 364 ~~~~~~~~~l-g~gle~~~G~~~Svr~~~~~l~LniDvs~~~F~~~~~l~d~i~~~~~~~~~~~~~~~~~~~~l~~~L~g 442 (1068)
++. ...++ ...+++|+||-+|||..+..++|+.|++|+ +.+..+|+|+|..+... ++...+++++.+.|
T Consensus 217 np~--~~i~ip~~km~lwPGy~tSIrq~E~~illctei~hK-vmR~ETvy~~m~~~~~~-------~~~~qe~~~~~~~g 286 (845)
T KOG1042|consen 217 DPR--AKIEIPEFKMSLWPGYETSIRQHENDILLCTEISHK-VMRTETVYDIMRSCQHN-------TQRFQETVNKNVIG 286 (845)
T ss_pred CCC--cccccccccceecCcchhHHHHhhhceeeehhhhhh-HhhhhHHHHHHHHHhhC-------HHHHHHHHHHHhcc
Confidence 987 33555 568999999999999999999999999998 58899999999998653 34466789999999
Q ss_pred cEEEEeecCCCCceEEEeccCCCCCCceeeeecCCCcEeeHHHHHHHHcCCccCCCCCceEEeccCC--------CCccc
Q 001489 443 VRVEVTHRGNMRRKYRISGLTSQTTGELTFPVDESGTLKSVVEYFYETYGFVIQHTQWPCLQVGNQQ--------RPNYL 514 (1068)
Q Consensus 443 l~V~~~~~~~~~r~~~I~~i~~~~a~~~~F~~~~~g~~iSV~~Yf~~~Y~i~L~~p~lP~v~~g~~~--------~~~yl 514 (1068)
+.|.|.|+ +|+|+|++|+|+.++.++|..++ .+||++|||+++|||+|++-+||+|....++ ..++|
T Consensus 287 livLT~YN---NktyriddvD~~~tP~stF~k~d--geIs~veYyk~qYni~I~dl~QPlliS~~k~K~~~g~~~q~~~l 361 (845)
T KOG1042|consen 287 LIVLTRYN---NKTYRIDDVDFSQTPLSTFKKDD--GEISFVEYYKKQYNIEITDLNQPLLISEPKDKRPKGEPPQLAML 361 (845)
T ss_pred eEEEEecC---CceeeeeccccCcCccceeeecC--ceeeHhHHHHHhcCeEEeeCCcceEeccCcccCCCCCCccceee
Confidence 99999999 89999999999999999998653 4999999999999999999999999985432 35799
Q ss_pred cccceEeccCccccccCCHHHHHHHHHHhcCCchHHHHHHHHHHHhccCCCC--ccccccceEEcccceEEeeEEcCCCc
Q 001489 515 PMEVCKIVEGQRYSKRLNERQITALLKVTCQRPHERERDIMQTVHHNAYHED--PYAREFGIKISEKLASVEARILPAPW 592 (1068)
Q Consensus 515 P~Elc~i~~gQ~~~~kl~~~q~~~mik~a~~~P~~R~~~I~~~~~~~~~~~~--~~l~~fGi~i~~~~~~v~grvL~~P~ 592 (1068)
.||||.++ |-...++-+.+.|++|.++|...|.+|...+..++..+.-+.+ +.|+.|||+++.++++|+|||||+.+
T Consensus 362 IPELc~~T-GLtd~mr~dF~~Mkama~hTRlsP~qR~~rlr~li~~l~~n~~~~~~lr~Wgi~ld~~l~~v~gRil~sEk 440 (845)
T KOG1042|consen 362 IPELCFLT-GLTDEMRSDFQLMKAMAEHTRLSPQQRQDRLRRLIDRLQKNPNSVEELRDWGISLDSNLAEVQGRILPSEK 440 (845)
T ss_pred ehhhhhcc-CCcHHHHhhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChHHHHHHHhcCcccCcchhhccceecCccc
Confidence 99999998 6666667777889999999999999999999988776643332 46899999999999999999999999
Q ss_pred eeecCCCCccccCCcCccee--ccCceeeeCceeceeEEEEecCCcchHHHHHHHHHHHHHHHhcCcccCCCCcccCCCC
Q 001489 593 LKYHDTGKEKDCLPQVGQWN--MMNKKMVNGGTVNHWICINFSRHVQDSIARGFCFELAQMCYISGMAFNPEPVIPPISA 670 (1068)
Q Consensus 593 i~y~~~~~~~~~~p~~G~Wn--l~~~kf~~~~~l~~W~vv~~~~~~~~~~~~~f~~~L~~~~~~~Gm~i~~~p~~~~~~~ 670 (1068)
|.+++.. ....+....|. ++..+++....+++|++++..++ ..++++|++.|.+.+..+||++.++-++.+.++
T Consensus 441 I~~~~~~--~~~~~~~ADWsr~~R~c~i~~~~~l~~W~vi~p~r~--~~~a~~fi~~l~r~a~~mgm~i~~P~~v~i~dd 516 (845)
T KOG1042|consen 441 ILFGNQK--VPYEGKQADWSREFRTCGILRGSNLDNWAVIYPGRN--NSEAQEFINMLRRVASSMGMQIREPICVEIKDD 516 (845)
T ss_pred eecCCcc--cCCCcchhhhhhhcccccccccCCCcceEEEecCcc--HHHHHHHHHHHHHhccccceecCCceEEEeCCC
Confidence 9998742 22334567896 68888999999999999976654 458899999999999999999988667777788
Q ss_pred ChhhHHHHHHHHHHHHHhhccCCCCceEEEEEeeCCCCchhhhhhhhhhcccCceeeeeecccccccc--HHHHHHHHHH
Q 001489 671 RPEHVEKVLKTRYHDAMTKLGQGKELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMS--KQYMANVALK 748 (1068)
Q Consensus 671 ~~~~~~~~l~~~~~~a~~~~~~~~~~~lvlvilp~~~~~~Y~~IK~~~d~~~GI~TQcv~~~~~~k~~--~q~~~Ni~lK 748 (1068)
+++.+.+++++.. +.++|+|+||||+++.+.|+.||++++++..||||||..+|+.+.. .++..+|+||
T Consensus 517 r~~tYvraiqq~v---------~~D~qmvvcil~~~nk~~Y~sIKK~~cvd~pvPsQ~V~lrTl~~~~~lmSIAtKI~lQ 587 (845)
T KOG1042|consen 517 RPGTYVRAIQQVV---------GADIQMVVCILPSDNKTRYDSIKKYLCVDCPVPSQCVNLRTLAKRSKLMSIATKIALQ 587 (845)
T ss_pred ChHHHHHHHHHhc---------cCCceEEEEEecCCchhhHHHHHhheeccCCCccceEEEEeecCcchhHHHHHHHHHH
Confidence 8999988887764 3579999999999999999999999999999999999999997643 5778899999
Q ss_pred HHhhcCCcccccccccccCCCccCCCCeEEEEEEecCCCCCCC-CCCeeEe--cCCCcceeeeEEEEccCCchhhhhhhc
Q 001489 749 INVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGED-SSPSIAA--DWPEVTKYAGLVCAQAHRQELIQDLFK 825 (1068)
Q Consensus 749 iN~KlGG~n~~l~~~~~~~~p~~~~~~tmiiG~DV~Hp~~g~~-~~pSiaa--d~~~~~~y~~~~~~Q~~~~E~i~~l~~ 825 (1068)
|||||||..|.++ ||+ +.+||||+||+|.+.... +.-.++| | ..+++|++.+..|...+|+.+.|
T Consensus 588 mnCKlGg~lW~V~------IPL---k~lMiVG~Dv~hd~~~k~rsvga~VAs~n-~~~tr~fS~v~~~~~~qel~d~L-- 655 (845)
T KOG1042|consen 588 MNCKLGGELWKVE------IPL---KGLMIVGFDVYHDPTLKGRSVGAFVASMN-NDFTRWFSRVIEQENGQELADNL-- 655 (845)
T ss_pred HhhhhcCcceEEe------eec---ccceEEEEEeecCccccCceEEEEEEeec-cchhhhhhheecccCHHHHHHHH--
Confidence 9999999999875 665 679999999999865322 2223333 6 89999999999999999999988
Q ss_pred cccCCCcCcchhHHHHHHHHHHHHHcCCCCceEEEEecCCChhHHHHHHHHHHH----HHHHHHHhhCCCCCCCEEEEEE
Q 001489 826 TWQDPVRGAVSGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLYELD----AIRKACASLEPNYQPPVTFVVV 901 (1068)
Q Consensus 826 ~~~~p~~~~~~~~mi~~~L~~f~~~~~~~P~~IIiYRDGVSEgQ~~~Vl~~El~----~I~~a~~~~~~~y~P~it~Ivv 901 (1068)
.-+|..+|++|++.|..+|+||||||||||+||+.+|.++||+ ++.+.++++..+|+|+++||||
T Consensus 656 -----------~~~~~~ALr~y~~~n~~LPsRIi~YRDGVgDGQLk~l~n~EV~~~~dql~~~~a~~~~~~~~rl~~iVV 724 (845)
T KOG1042|consen 656 -----------KVFLAKALRQYYEVNRTLPSRIIVYRDGVGDGQLKTLVNYEVPLVCDQLLDCYAELSNKEKPRLAVIVV 724 (845)
T ss_pred -----------HHHHHHHHHHHHHhcccCCceEEEEecCCCCcccceeeeeccchHHHHHHHHHHHhcCCCCCcEEEEEE
Confidence 6899999999999999999999999999999999999999999 7777778888889999999999
Q ss_pred eecccccccccCCCCCCCCCCCCCCccceeecccccCCCcCceeeccccCccccccCceEEEEecCCCCCHHHHHHHHHH
Q 001489 902 QKRHHTRLFANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNN 981 (1068)
Q Consensus 902 ~KrhhtRff~~~~~~~~~~~~~~N~~pGTVVD~~It~p~~~DFyL~Sh~~~qGTarPthY~VL~De~~~~~d~Lq~LT~~ 981 (1068)
+||.+||||-.... ...||+||||||++||.|.++||||+||++.|||..||||.||||++++++|.+|+|||+
T Consensus 725 ~KrvntR~f~~~~~------~~~NP~PGTVVD~~iT~pEryDFyLvsQ~VrqGtvsPTsYnvi~d~~gL~PDkmQrLtfK 798 (845)
T KOG1042|consen 725 TKRVNTRFFLQGSS------NAQNPPPGTVVDDTITRPERYDFYLVSQAVRQGTVSPTSYNVIYDDMGLSPDKMQRLTFK 798 (845)
T ss_pred EeeccHHHHhhCCc------cccCCCCCceecceecccceeeeEeehhhhhcCCcCCceEEEEecCCCCCHHHHHHHHHH
Confidence 99999999987653 578999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccccCCCccccchhHHHHHHHHHhhhhcCc
Q 001489 982 LCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEP 1015 (1068)
Q Consensus 982 LCy~y~r~t~sVSip~P~yYA~l~a~Rar~~~~~ 1015 (1068)
|||+|++|.+.|++||||+|||++|+..-.-|..
T Consensus 799 lCHlYyNW~GtiRVPApCqYAHKLAfLv~qslH~ 832 (845)
T KOG1042|consen 799 LCHLYYNWPGTIRVPAPCQYAHKLAFLVAQSLHR 832 (845)
T ss_pred HhheeecCCcceeccchhHHHHHHHHHHHhhhhh
Confidence 9999999999999999999999999988765553
No 4
>cd04657 Piwi_ago-like Piwi_ago-like: PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing.
Probab=100.00 E-value=9.8e-101 Score=897.76 Aligned_cols=415 Identities=53% Similarity=0.927 Sum_probs=366.5
Q ss_pred ccccccceEEcccceEEeeEEcCCCceeecCCCCccccCCcCcceeccCceeeeCceeceeEEEEecCCcch----HHHH
Q 001489 567 PYAREFGIKISEKLASVEARILPAPWLKYHDTGKEKDCLPQVGQWNMMNKKMVNGGTVNHWICINFSRHVQD----SIAR 642 (1068)
Q Consensus 567 ~~l~~fGi~i~~~~~~v~grvL~~P~i~y~~~~~~~~~~p~~G~Wnl~~~kf~~~~~l~~W~vv~~~~~~~~----~~~~ 642 (1068)
++|++|||+|+++|++|+||+|++|+|.|+++. ....+.+|+||+++++|++++.+++|+||++.+..+. +.++
T Consensus 1 ~~l~~fGi~i~~~~~~v~grvL~~P~i~y~~~~--~~~~~~~g~W~~~~~~f~~~~~~~~W~vi~~~~~~~~~~~~~~~~ 78 (426)
T cd04657 1 PYLKEFGISVSKEMITVPGRVLPPPKLKYGDSS--KTVPPRNGSWNLRGKKFLEGGPIRSWAVLNFAGPRRSREERADLR 78 (426)
T ss_pred ChhHhCCCEecCCeeEEeEEEcCCceeeccCCc--cccCCCCCceeecCcccCCCcccceEEEEEecCccccchhHHHHH
Confidence 468999999999999999999999999999633 2345778999999999999999999999988653221 4789
Q ss_pred HHHHHHHHHHHhcCcccCCCCcccCCCCChhhHHHHHHHHHHHHHhhccCCCCceEEEEEeeCCCCchhhhhhhhhhccc
Q 001489 643 GFCFELAQMCYISGMAFNPEPVIPPISARPEHVEKVLKTRYHDAMTKLGQGKELDLLIVILPDNNGSLYGDLKRICETDL 722 (1068)
Q Consensus 643 ~f~~~L~~~~~~~Gm~i~~~p~~~~~~~~~~~~~~~l~~~~~~a~~~~~~~~~~~lvlvilp~~~~~~Y~~IK~~~d~~~ 722 (1068)
.|++.|.+.|+.+||.+. .... ...+. ++.+++.+.++. ...++|||||||+++.++|+.||++||+++
T Consensus 79 ~F~~~l~~~~~~~g~~~~--~~~~---~~~~~----~~~~~~~~~~~~--~~~~~lv~~ilp~~~~~~Y~~iK~~~~~~~ 147 (426)
T cd04657 79 NFVDQLVKTVIGAGINIT--TAIA---SVEGR----VEELFAKLKQAK--GEGPQLVLVILPKKDSDIYGRIKRLADTEL 147 (426)
T ss_pred HHHHHHHHHHHhcCCccc--cccc---ccchh----HHHHHHHHHhhc--cCCCCEEEEEEcCCCcchHHHHHHHHhhcC
Confidence 999999999999999986 2111 11222 333333332222 136899999999988899999999999999
Q ss_pred Cceeeeeecccccc-ccHHHHHHHHHHHHhhcCCcccccccccccCCCccCCCCeEEEEEEecCCCCCC-CCCCeeEe--
Q 001489 723 GLVSQCCLTKHVFK-MSKQYMANVALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGE-DSSPSIAA-- 798 (1068)
Q Consensus 723 GI~TQcv~~~~~~k-~~~q~~~Ni~lKiN~KlGG~n~~l~~~~~~~~p~~~~~~tmiiG~DV~Hp~~g~-~~~pSiaa-- 798 (1068)
||+||||..+++.| .++||+.||+||||+||||+||.|++.. .+++...+|||||+||+||+++. ...|||||
T Consensus 148 gI~TQci~~~~~~k~~~~~~~~NI~lKin~KlGG~n~~v~~~~---~~~~~~~~tmiiG~Dv~H~~~~~~~~~pSiaa~V 224 (426)
T cd04657 148 GIHTQCVLAKKVTKKGNPQYFANVALKINLKLGGINHSLEPDI---RPLLTKEPTMVLGADVTHPSPGDPAGAPSIAAVV 224 (426)
T ss_pred CcccEEEcccccccccchHHHHHHHHHHHHhcCCEeeeccccc---ccccCCCCEEEEEEeeecCCCCCCCCCCcEEEEE
Confidence 99999999999986 7899999999999999999999997641 22345689999999999999875 45788887
Q ss_pred ---cCCCcceeeeEEEEccCCchhhhhhhccccCCCcCcchhHHHHHHHHHHHHHcCCCCceEEEEecCCChhHHHHHHH
Q 001489 799 ---DWPEVTKYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLL 875 (1068)
Q Consensus 799 ---d~~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~p~~~~~~~~mi~~~L~~f~~~~~~~P~~IIiYRDGVSEgQ~~~Vl~ 875 (1068)
| .++++|.+.+++|.+++|+|++| ++||+++|+.|++.++.+|++|||||||||||||.+|++
T Consensus 225 as~d-~~~~~y~~~~~~q~~~~e~i~~l-------------~~~~~~~l~~~~~~~~~~P~~IiiyRDGvsegq~~~v~~ 290 (426)
T cd04657 225 ASVD-WHLAQYPASVRLQSHRQEIIDDL-------------ESMVRELLRAFKKATGKLPERIIYYRDGVSEGQFAQVLN 290 (426)
T ss_pred EecC-CcccccceEEEEeCCCcchHHHH-------------HHHHHHHHHHHHHHhCCCCceEEEEEcCcCHHHHHHHHH
Confidence 7 88999999999999999999988 799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCCCCEEEEEEeecccccccccCCCCCCCCCCCCCCccceeecccccCCCcCceeeccccCcccc
Q 001489 876 YELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGT 955 (1068)
Q Consensus 876 ~El~~I~~a~~~~~~~y~P~it~Ivv~KrhhtRff~~~~~~~~~~~~~~N~~pGTVVD~~It~p~~~DFyL~Sh~~~qGT 955 (1068)
+|+++|++||.+++++|+|+||||||+||||||||+.+..+.+ .+.+||+||||||++||+|.+||||||||.++|||
T Consensus 291 ~E~~~i~~a~~~~~~~~~pkit~ivv~Krh~~Rff~~~~~~~~--~~~~N~~pGTvVd~~it~p~~~dFyL~sh~~~qGT 368 (426)
T cd04657 291 EELPAIRKACAKLYPGYKPKITFIVVQKRHHTRFFPTDEDDAD--GKNGNVPPGTVVDRGITHPREFDFYLCSHAGIQGT 368 (426)
T ss_pred HHHHHHHHHHHHhccCCCCcEEEEEeccceeeeEeccCccccc--ccCCCCCCCeEEecccCCCCceeEEEeccccCccC
Confidence 9999999999999888999999999999999999998765421 23799999999999999999999999999999999
Q ss_pred ccCceEEEEecCCCCCHHHHHHHHHHhhccccccCCCccccchhHHHHHHHHHhhhhc
Q 001489 956 SRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYM 1013 (1068)
Q Consensus 956 arPthY~VL~De~~~~~d~Lq~LT~~LCy~y~r~t~sVSip~P~yYA~l~a~Rar~~~ 1013 (1068)
||||||+||+||+++++|+||+|||+|||+|+|||++||||+|+||||++|+|||+||
T Consensus 369 arPt~Y~vl~d~~~~~~d~lq~lt~~lc~~y~~~~~~vsip~p~~yA~~la~r~r~~~ 426 (426)
T cd04657 369 ARPTHYHVLWDEIGFTADELQTLTYNLCYTYARCTRSVSIPPPAYYAHLAAARARCYL 426 (426)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999999999999999999999996
No 5
>cd04658 Piwi_piwi-like_Euk Piwi_piwi-like_Euk: PIWI domain, Piwi-like subfamily found in eukaryotes. This domain is found in Piwi and closely related proteins, where it is believed to perform a crucial role in germline cells, via RNA silencing. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The mechanism in Piwi is believed to be similar to that in Argonaute, the central component of the RNA-induced silencing complex (RISC). The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing.
Probab=100.00 E-value=1.2e-93 Score=846.12 Aligned_cols=434 Identities=30% Similarity=0.484 Sum_probs=386.0
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHhccCCCC--ccccccceEEcccceEEeeEEcCCCceeecCCCCccccCCcCccee
Q 001489 535 QITALLKVTCQRPHERERDIMQTVHHNAYHED--PYAREFGIKISEKLASVEARILPAPWLKYHDTGKEKDCLPQVGQWN 612 (1068)
Q Consensus 535 q~~~mik~a~~~P~~R~~~I~~~~~~~~~~~~--~~l~~fGi~i~~~~~~v~grvL~~P~i~y~~~~~~~~~~p~~G~Wn 612 (1068)
.|++|+++++.+|.+|++.|.++++.+.++.+ ++|++|||+|++++++|+||+|+||.|.|+++. ...+..++|+
T Consensus 2 ~m~~l~~~~~~~P~eR~~~i~~~~~~~~~~~~~~~~l~~~gi~i~~~~~~v~~rvL~~P~i~~~~~~---~~~~~~~~w~ 78 (448)
T cd04658 2 LMKELAEHTKLNPKERYDTIRQFIQRIQKNPSVQELLKKWGIELDSNPLKIQGRVLPPEQIIMGNVF---VYANSNADWK 78 (448)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCchHHHHHHCCeEEcCCceEEeeEEeCCCeEEeCCCc---cCCCCCCCcc
Confidence 47899999999999999999999988876665 589999999999999999999999999998742 1235578887
Q ss_pred c--cCceeeeCceeceeEEEEecCCcchHHHHHHHHHHHHHHHhcCcccCCCCcccCCCCChhhHHHHHHHHHHHHHhhc
Q 001489 613 M--MNKKMVNGGTVNHWICINFSRHVQDSIARGFCFELAQMCYISGMAFNPEPVIPPISARPEHVEKVLKTRYHDAMTKL 690 (1068)
Q Consensus 613 l--~~~kf~~~~~l~~W~vv~~~~~~~~~~~~~f~~~L~~~~~~~Gm~i~~~p~~~~~~~~~~~~~~~l~~~~~~a~~~~ 690 (1068)
+ .+.+|+.+..+++|++|++. .+.+.++.|++.|.+.++.+||.+..+.++.+...+.+++.+.|++.+.
T Consensus 79 ~~~~~~~~~~~~~~~~W~vi~~~--~~~~~~~~f~~~l~~~~~~~G~~~~~P~~~~~~~~~~~~~~~~l~~~~~------ 150 (448)
T cd04658 79 REIRNQPLYDAVNLNNWVLIYPS--RDQREAESFLQTLKQVAGPMGIQISPPKIIKVKDDRIETYIRALKDAFR------ 150 (448)
T ss_pred hhhcCCcccCCcccCeEEEEEec--CCHHHHHHHHHHHHHHHHHcCCccCCCeEEEeCCCCHHHHHHHHHHhhc------
Confidence 5 56678999999999999875 3567899999999999999999997755554544445566655554432
Q ss_pred cCCCCceEEEEEeeCCCCchhhhhhhhhhcccCceeeeeeccccccc--cHHHHHHHHHHHHhhcCCcccccccccccCC
Q 001489 691 GQGKELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKM--SKQYMANVALKINVKVGGRNTVLVDAISRRI 768 (1068)
Q Consensus 691 ~~~~~~~lvlvilp~~~~~~Y~~IK~~~d~~~GI~TQcv~~~~~~k~--~~q~~~Ni~lKiN~KlGG~n~~l~~~~~~~~ 768 (1068)
.+++|+|||||++..++|..||++|+.++||+||||..+++.+. ..+++.||+||||+||||+||.|+..
T Consensus 151 ---~~~~lvvvilp~~~~~~Y~~iK~~~~~~~gI~tQ~i~~~t~~~~~~~~~~~~ni~lkinaKlGG~~w~l~~~----- 222 (448)
T cd04658 151 ---SDPQLVVIILPGNKKDLYDAIKKFCCVECPVPSQVITSRTLKKKKNLRSIASKIALQINAKLGGIPWTVEIP----- 222 (448)
T ss_pred ---CCCcEEEEEECCCCchhHHHHHHHhhcccCcCCEEEehhhcccccccHHHHHHHHHHHHHHhCCcceEeccC-----
Confidence 46899999999988889999999999999999999999999764 56899999999999999999998753
Q ss_pred CccCCCCeEEEEEEecCCCCCCCCCCeeEe-----cCCCcceeeeEEEEccCCchh-hhhhhccccCCCcCcchhHHHHH
Q 001489 769 PLVSDRPTIIFGADVTHPHPGEDSSPSIAA-----DWPEVTKYAGLVCAQAHRQEL-IQDLFKTWQDPVRGAVSGGMIKE 842 (1068)
Q Consensus 769 p~~~~~~tmiiG~DV~Hp~~g~~~~pSiaa-----d~~~~~~y~~~~~~Q~~~~E~-i~~l~~~~~~p~~~~~~~~mi~~ 842 (1068)
+ ....+|||||+||+||++. ..||||| | .++++|.+.++.|..++|+ +++| ++||++
T Consensus 223 ~-~~~~~tmiiGidv~h~~~~--~~~Si~a~vas~~-~~~~~~~~~~~~q~~~~e~~~~~l-------------~~~~~~ 285 (448)
T cd04658 223 P-FILKNTMIVGIDVYHDTIT--KKKSVVGFVASLN-KSITKWFSKYISQVRGQEEIIDSL-------------GKSMKK 285 (448)
T ss_pred C-CCCCCeEEEEEeeecCCCC--CCCcEEEEEEEcC-CCCceEeeEEEEeCCCceeeHHHH-------------HHHHHH
Confidence 1 2357899999999999874 3577766 7 7899999999999999998 7777 799999
Q ss_pred HHHHHHHHcCCCCceEEEEecCCChhHHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEEeecccccccccCCCCCCCCCC
Q 001489 843 LLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHHDRNAVDR 922 (1068)
Q Consensus 843 ~L~~f~~~~~~~P~~IIiYRDGVSEgQ~~~Vl~~El~~I~~a~~~~~~~y~P~it~Ivv~KrhhtRff~~~~~~~~~~~~ 922 (1068)
+|+.|++.++.+|++|||||||||||||.+|+++|+++|++||..++.+|+|+||||+|+||||+|||+.+.. .
T Consensus 286 ~l~~y~~~~~~~P~~IiiyRdGvsegq~~~v~~~E~~~i~~a~~~~~~~~~p~it~ivv~Kr~~~Rff~~~~~------~ 359 (448)
T cd04658 286 ALKAYKKENKKLPSRIIIYRDGVGDGQLKKVKEYEVPQIKKAIKQYSENYSPKLAYIVVNKRINTRFFNQGGN------N 359 (448)
T ss_pred HHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEeccccceeecCCCC------C
Confidence 9999999999999999999999999999999999999999999998888999999999999999999997642 4
Q ss_pred CCCCccceeecccccCCCcCceeeccccCccccccCceEEEEecCCCCCHHHHHHHHHHhhccccccCCCccccchhHHH
Q 001489 923 SGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYA 1002 (1068)
Q Consensus 923 ~~N~~pGTVVD~~It~p~~~DFyL~Sh~~~qGTarPthY~VL~De~~~~~d~Lq~LT~~LCy~y~r~t~sVSip~P~yYA 1002 (1068)
.+||+||||||++||+|..|||||+||.++|||||||||+||+||+++++|+||+|||+|||+|+|||++||||+|+|||
T Consensus 360 ~~N~~~GTvVd~~it~p~~~dFyL~s~~~~qGtarP~~Y~Vl~d~~~~~~~~lq~lt~~lc~~y~~~~~~vs~P~p~~yA 439 (448)
T cd04658 360 FSNPPPGTVVDSEITKPEWYDFFLVSQSVRQGTVTPTHYNVLYDTTGLKPDHLQRLTYKLCHLYYNWSGSIRVPAPCQYA 439 (448)
T ss_pred CCCCCCCcEecccccCCCcccEEEeccccCccCCCCceEEEEECCCCCCHHHHHHHHHHhhhcccCCCCCCccCHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhh
Q 001489 1003 HLAAFRAR 1010 (1068)
Q Consensus 1003 ~l~a~Rar 1010 (1068)
|++|+|+.
T Consensus 440 ~~~a~~~g 447 (448)
T cd04658 440 HKLAFLVG 447 (448)
T ss_pred HHHHHHhc
Confidence 99999874
No 6
>cd02826 Piwi-like Piwi-like: PIWI domain. Domain found in proteins involved in RNA silencing. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The central component of the RNA-induced silencing complex (RISC) and related complexes is Argonaute. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing. This domain is also found in closely related proteins, including the Piwi subfamily, where it is believed to perform a crucial role in germline cells, via a similar mechanism.
Probab=100.00 E-value=5.1e-87 Score=775.59 Aligned_cols=381 Identities=32% Similarity=0.494 Sum_probs=329.8
Q ss_pred ceEEeeEEcCCCceeecCCCCccccCCcCcceeccCceeeeCcee-ceeEEEEecCCcchHHHHHHHHHHHHHHHhcCcc
Q 001489 580 LASVEARILPAPWLKYHDTGKEKDCLPQVGQWNMMNKKMVNGGTV-NHWICINFSRHVQDSIARGFCFELAQMCYISGMA 658 (1068)
Q Consensus 580 ~~~v~grvL~~P~i~y~~~~~~~~~~p~~G~Wnl~~~kf~~~~~l-~~W~vv~~~~~~~~~~~~~f~~~L~~~~~~~Gm~ 658 (1068)
+++|+|||||+|.|.|+++ |++++++|+.++.+ ++|+|+++.+ +..+.|++.|.+.|+.+||.
T Consensus 2 ~~~v~grvL~~p~i~~~~~------------w~~~~~~f~~~~~~~~~W~vi~~~~----~~~~~f~~~l~~~~~~~G~~ 65 (393)
T cd02826 2 PLILKGRVLPKPQILFKNK------------FLRNIGPFEKPAKITNPVAVIAFRN----EEVDDLVKRLADACRQLGMK 65 (393)
T ss_pred ceEEeeEecCCCceEecCC------------ccccCCeeCCCCEeCCeEEEEEccc----HHHHHHHHHHHHHHHhCCCc
Confidence 6789999999999999751 99999999999999 9999998853 23568999999999999999
Q ss_pred cCC-CCcccCCCC--ChhhHHHHHHHHHHHHHhhccCCCCceEEEEEeeCCCCchhhhhhhhhhcccCceeeeeeccccc
Q 001489 659 FNP-EPVIPPISA--RPEHVEKVLKTRYHDAMTKLGQGKELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVF 735 (1068)
Q Consensus 659 i~~-~p~~~~~~~--~~~~~~~~l~~~~~~a~~~~~~~~~~~lvlvilp~~~~~~Y~~IK~~~d~~~GI~TQcv~~~~~~ 735 (1068)
+.. ++...+... +.+++.+.|++.. + .+++|||||+|+++.++|+.||++|+.+ ||+||||+.+++.
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-----~~~~lv~~ilp~~~~~~Y~~iK~~~~~~-gI~tQ~i~~~t~~ 135 (393)
T cd02826 66 IKEIPIVSWIEDLNNSFKDLKSVFKNAI----K-----AGVQLVIFILKEKKPPLHDEIKRLEAKS-DIPSQVIQLKTAK 135 (393)
T ss_pred cCCCCCcceeecccccHHHHHHHHHHHh----h-----cCCCEEEEEEcCCCccHHHHHHHHHhcc-CCceEEEehhhhc
Confidence 976 333222211 2334444443322 1 4699999999999889999999999988 9999999999997
Q ss_pred c--ccHHHHHHHHHHHHhhcCCcccccccccccCCCccCCCCeEEEEEEecCCCCC-CCCCCeeEe---cCCCcceeeeE
Q 001489 736 K--MSKQYMANVALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPG-EDSSPSIAA---DWPEVTKYAGL 809 (1068)
Q Consensus 736 k--~~~q~~~Ni~lKiN~KlGG~n~~l~~~~~~~~p~~~~~~tmiiG~DV~Hp~~g-~~~~pSiaa---d~~~~~~y~~~ 809 (1068)
+ ..++|+.||+||||+||||+||.|+.. .+...+|||||+||+|++++ ....||+++ +....+.+.+.
T Consensus 136 ~~~~~~~~~~Ni~lkin~KlGG~~~~l~~~------~~~~~~tmiiGiDv~h~~~~~~~~~~si~~~vas~~~~~~~g~~ 209 (393)
T cd02826 136 KMRRLKQTLDNLLRKVNSKLGGINYILDSP------VKLFKSDIFIGFDVSHPDRRTVNGGPSAVGFAANLSNHTFLGGF 209 (393)
T ss_pred cccccHHHHHHHHHHHhhhhCCeeeEeccC------CCCCCCEEEEEEEeeCCCCCCCCCCCcEEEEEeecCCccccceE
Confidence 6 678999999999999999999999753 12347899999999999886 335688777 21111333455
Q ss_pred EEEccCCchhhhhhhccccCCCcCcchhHHHHHHHHHHHHHcCC-CCceEEEEecCCChhHHHHHHHHHHHHHHHHHHhh
Q 001489 810 VCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISFRRATGQ-KPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASL 888 (1068)
Q Consensus 810 ~~~Q~~~~E~i~~l~~~~~~p~~~~~~~~mi~~~L~~f~~~~~~-~P~~IIiYRDGVSEgQ~~~Vl~~El~~I~~a~~~~ 888 (1068)
++.|..++|++++| ++||+++|+.|+++++. +|++|||||||||||||++|+++|+++|++||. +
T Consensus 210 ~~~~~~~~~~~~~l-------------~~~~~~~L~~y~~~~~~~~P~~IiiyRDGvsegq~~~v~~~e~~~i~~a~~-~ 275 (393)
T cd02826 210 LYVQPSREVKLQDL-------------GEVIKKCLDGFKKSTGEGLPEKIVIYRDGVSEGEFKRVKEEVEEIIKEACE-I 275 (393)
T ss_pred EEEecCccchHHHH-------------HHHHHHHHHHHHHHcCCCCcceeEEEecCCCHHHHHHHHHHHHHHHHHHHh-h
Confidence 78898889998887 79999999999999999 999999999999999999999999999999999 7
Q ss_pred CCCCCCCEEEEEEeecccccccccCCCCCCCCCCCCCCccceeecccccCCCcCceeeccccCccccccCceEEEEecCC
Q 001489 889 EPNYQPPVTFVVVQKRHHTRLFANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDEN 968 (1068)
Q Consensus 889 ~~~y~P~it~Ivv~KrhhtRff~~~~~~~~~~~~~~N~~pGTVVD~~It~p~~~DFyL~Sh~~~qGTarPthY~VL~De~ 968 (1068)
+.+|+|+||||||+||||+|||+.+..+ ..+||+||||||++||||..+||||+||.++|||+|||||+||+||+
T Consensus 276 ~~~~~p~it~Ivv~Krh~~Rff~~~~~~-----~~~Np~~GTvVd~~it~p~~~dFyL~sh~~~qGT~rP~~Y~Vl~d~~ 350 (393)
T cd02826 276 EESYRPKLVIIVVQKRHNTRFFPNEKNG-----GVQNPEPGTVVDHTITSPGLSEFYLASHVARQGTVKPTKYTVVFNDK 350 (393)
T ss_pred CCCCCCCEEEEEEeccccceeccCCCCC-----CCCCCCCceEeccccccCCcceEEEeccccCcCCCCCceEEEEECCC
Confidence 7789999999999999999999987543 34899999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhhccccccCCCccccchhHHHHHHHHHhhh
Q 001489 969 KFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARF 1011 (1068)
Q Consensus 969 ~~~~d~Lq~LT~~LCy~y~r~t~sVSip~P~yYA~l~a~Rar~ 1011 (1068)
++++|+||+|||+|||+|+|||++||||+||||||++|+|||.
T Consensus 351 ~~~~d~lq~lty~lc~~y~~~~~~vslP~p~~yA~~~a~r~rn 393 (393)
T cd02826 351 NWSLNELEILTYILCLTHQNVYSPISLPAPLYYAHKLAKRGRN 393 (393)
T ss_pred CCCHHHHHHHHHHHhhcccccCCCcccChHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999999984
No 7
>PF02171 Piwi: Piwi domain; InterPro: IPR003165 This domain is found in the stem cell self-renewal protein Piwi and its relatives in Drosophila melanogaster []. It has been found in the C-terminal of a number of proteins which also contain the PAZ domain (IPR003100 from INTERPRO) in their central region, for example the Argonaute proteins. Several of these proteins have been implicated in the development and maintenance of stem cells through the RNA-mediated gene-quelling mechanisms associated with the protein DICER. ; GO: 0005515 protein binding; PDB: 4F1N_B 3LUH_B 4EI1_A 3QX8_A 3LUC_C 3LUJ_B 3LUD_B 3QX9_A 3LUG_B 3LUK_B ....
Probab=100.00 E-value=4.3e-71 Score=623.77 Aligned_cols=294 Identities=47% Similarity=0.775 Sum_probs=262.1
Q ss_pred EEEEEeeCCCCchhhhhhhhhhcccCceeeeeeccccccc--cHHHHHHHHHHHHhhcCCcccccccccccCCCccCCCC
Q 001489 698 LLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKM--SKQYMANVALKINVKVGGRNTVLVDAISRRIPLVSDRP 775 (1068)
Q Consensus 698 lvlvilp~~~~~~Y~~IK~~~d~~~GI~TQcv~~~~~~k~--~~q~~~Ni~lKiN~KlGG~n~~l~~~~~~~~p~~~~~~ 775 (1068)
+||||||+++.+.|..||++|+.++||+||||..+++.+. ..+++.||+||||+||||+|+.+.+. ....++ .+
T Consensus 1 ~i~~ii~~~~~~~Y~~iKk~~~~~~gi~tQ~i~~~~~~~~~~~~~~~~ni~lkinaKlGG~n~~~~~~-~~~~~~---~~ 76 (302)
T PF02171_consen 1 LIVVIIPDKNSDNYHAIKKYLERKLGIPTQCILSKTLRKKNKSKQILNNIALKINAKLGGINPWLLDS-PPSIDL---KN 76 (302)
T ss_dssp -EEEEESSSSHHHHHHHHHHHHTTTTCEEEEEEHHHHHTSTHHHHHHHHHHHHHHHHTTTBSEEECSC-SSGSSE---SE
T ss_pred CEEEEEeCCChhHHHHHHHHHccCCCcccEEEccCcccccchHHHHHHHHHHHHHHhCCCeeeeeccc-cccccc---Cc
Confidence 5889999988899999999999999999999999999877 46999999999999999996443321 111111 68
Q ss_pred eEEEEEEecCCCCCCCCCCeeEe-----cCCCcceeeeEEEEccCCchhhhhhhccccCCCcCcchhHHHHHHHHHHHHH
Q 001489 776 TIIFGADVTHPHPGEDSSPSIAA-----DWPEVTKYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISFRRA 850 (1068)
Q Consensus 776 tmiiG~DV~Hp~~g~~~~pSiaa-----d~~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~p~~~~~~~~mi~~~L~~f~~~ 850 (1068)
|||||+||+|++++....||++| | .+.++|.+.++.|..++|++++| .+|++++|+.|++.
T Consensus 77 ~miIGidv~h~~~~~~~~~sv~g~~~s~~-~~~~~~~~~~~~~~~~~e~~~~l-------------~~~~~~~L~~~~~~ 142 (302)
T PF02171_consen 77 TMIIGIDVSHPSPGSDKNPSVVGFVASFD-SDGSKYFSSVRFQDSGQEIIDNL-------------EEIIKEALKEFKKN 142 (302)
T ss_dssp EEEEEEEEEEESSTCTCSCEEEEEEEEES-TTTCEEEEEEEEECTTCCCHHHH-------------HHHHHHHHHHHHHT
T ss_pred eEEEEEEEEecCcccCCcceeeEEEEecc-CccccccceeEEeccchhhhcch-------------hhHHHHHHHHHHHH
Confidence 99999999999987645678776 7 89999999999999999999987 78999999999999
Q ss_pred cCC-CCceEEEEecCCChhHHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEEeecccccccccCCCCCCCCCCCCCCccc
Q 001489 851 TGQ-KPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHHDRNAVDRSGNILPG 929 (1068)
Q Consensus 851 ~~~-~P~~IIiYRDGVSEgQ~~~Vl~~El~~I~~a~~~~~~~y~P~it~Ivv~KrhhtRff~~~~~~~~~~~~~~N~~pG 929 (1068)
++. +|++|||||||||||||.+|+++|+++|++||+++..+|.|+||||+|+||||+|||+.+..+ ...||+||
T Consensus 143 ~~~~~P~~IiiyRdGvse~~~~~v~~~Ei~~i~~a~~~~~~~~~p~~~~i~v~K~~~~R~f~~~~~~-----~~~N~~~G 217 (302)
T PF02171_consen 143 NGKWLPERIIIYRDGVSEGQFKKVLEEEIEAIKEAIKELGEDYNPKITYIVVQKRHNTRFFPQNGRD-----GLQNPPPG 217 (302)
T ss_dssp TTT-TTSEEEEEEES--GGGHHHHHHHHHHHHHHHHHHHTHTTCTEEEEEEEESSSS--EEESSSEE-----TTTEECTT
T ss_pred cCCCCCceEEEEEcccCHHhhcccHHHHHHHHHHHHhhcccCCCCcEEEEEeeccccceEeeccccc-----ccCCCCCC
Confidence 998 999999999999999999999999999999999999899999999999999999999987642 57899999
Q ss_pred eeecccccCCCcCceeeccccCccccccCceEEEEecCCCCCHHHHHHHHHHhhccccccCCCccccchhHHHHHHHHHh
Q 001489 930 TVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRA 1009 (1068)
Q Consensus 930 TVVD~~It~p~~~DFyL~Sh~~~qGTarPthY~VL~De~~~~~d~Lq~LT~~LCy~y~r~t~sVSip~P~yYA~l~a~Ra 1009 (1068)
||||+.||+|..+||||+||.++|||+|||||+||+||+.++.|+||+|||+|||+|+||+++||+|+|+||||++|+|+
T Consensus 218 tvvd~~i~~~~~~~f~l~s~~~~~Gt~~P~~y~vl~~~~~~~~~~l~~~t~~L~~~~~~~~~~~~lP~p~~yA~~~a~~~ 297 (302)
T PF02171_consen 218 TVVDTGITSPNYFEFYLVSHTARQGTARPTHYTVLYDDSNLSMDELQQLTYSLCHLYQNSTGPISLPAPLYYAHKLAKRG 297 (302)
T ss_dssp EEESSEEEECSBEEEEEETSCCCSSSEEEEEEEEEEESSCSCHHHHHHHHHHHTTGGTTSSS--SS-HHHHHHHHHHHHH
T ss_pred eeeccceeeecceeeeeeecccccccccccEEEEecCcccccHHHHHHHHHHHHHHhcccCCCCccCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcC
Q 001489 1010 RFYME 1014 (1068)
Q Consensus 1010 r~~~~ 1014 (1068)
+.++.
T Consensus 298 ~~~~~ 302 (302)
T PF02171_consen 298 RNNLK 302 (302)
T ss_dssp HHHC-
T ss_pred HhhcC
Confidence 99863
No 8
>cd04659 Piwi_piwi-like_ProArk Piwi_piwi-like_ProArk: PIWI domain, Piwi-like subfamily found in Archaea and Bacteria. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The central component of the RNA-induced silencing complex (RISC) and related complexes is Argonaute. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing. This domain is also found in closely related proteins, including the Piwi subfamily, where it is believed to perform a crucial role in germline cells, via a similar mechanism.
Probab=100.00 E-value=3.2e-47 Score=444.95 Aligned_cols=273 Identities=23% Similarity=0.252 Sum_probs=226.7
Q ss_pred CCceEEEEEeeCCC------CchhhhhhhhhhcccCceeeeeeccccccc--cHHHHHHHHHHHHhhcCCcccccccccc
Q 001489 694 KELDLLIVILPDNN------GSLYGDLKRICETDLGLVSQCCLTKHVFKM--SKQYMANVALKINVKVGGRNTVLVDAIS 765 (1068)
Q Consensus 694 ~~~~lvlvilp~~~------~~~Y~~IK~~~d~~~GI~TQcv~~~~~~k~--~~q~~~Ni~lKiN~KlGG~n~~l~~~~~ 765 (1068)
..++++|||||++. .++|..||++| .+.||+||||..+|+.+. ..+++.||++|||+||||+||.|+..
T Consensus 109 ~~~~~~lvilP~~~~~~~~~~~~Y~~iK~~~-~~~giptQ~v~~~tl~~~~~~~~~~~nial~i~aKlGG~pW~l~~~-- 185 (404)
T cd04659 109 QGVDVVIVVLPEDLKELPEEFDLYDRLKAKL-LRLGIPTQFVREDTLKNRQDLAYVAWNLALALYAKLGGIPWKLDAD-- 185 (404)
T ss_pred CCCCEEEEEeCHHHhhcccccCHHHHHHHHH-HhcCCceEEeeHHHcCccccHHHHHHHHHHHHHHhcCCCceEcccC--
Confidence 46899999999875 78999999987 679999999999999754 57899999999999999999998642
Q ss_pred cCCCccCCCCeEEEEEEecCCCCCCCCCCeeEe--cCCCcceeeeEEEEccCCchhhhhhhccccCCCcCcchhHHHHHH
Q 001489 766 RRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAA--DWPEVTKYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKEL 843 (1068)
Q Consensus 766 ~~~p~~~~~~tmiiG~DV~Hp~~g~~~~pSiaa--d~~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~p~~~~~~~~mi~~~ 843 (1068)
...+|||||+||+|+..+....+++|+ | .+. .+.+..+...++.+.+- ....+.++++++
T Consensus 186 ------~~~~~~iIGidv~~~~~~~~~~~~~a~vf~-~~g---~g~~~~~~~~~~~~~~~--------~~~~~~~~l~~~ 247 (404)
T cd04659 186 ------SDPADLYIGIGFARSRDGEVRVTGCAQVFD-SDG---LGLILRGAPIEEPTEDR--------SPADLKDLLKRV 247 (404)
T ss_pred ------CCCCeEEEEEEEEEcCCCCEEEEEEEEEEc-CCC---CEEEEecCccCCccccc--------CHHHHHHHHHHH
Confidence 236899999999999865334567777 4 222 12222233333333210 001247899999
Q ss_pred HHHHHHHcCC-CCceEEEEecCCChhHHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEEeecccccccccCCCCCCCCCC
Q 001489 844 LISFRRATGQ-KPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHHDRNAVDR 922 (1068)
Q Consensus 844 L~~f~~~~~~-~P~~IIiYRDGVSEgQ~~~Vl~~El~~I~~a~~~~~~~y~P~it~Ivv~KrhhtRff~~~~~~~~~~~~ 922 (1068)
|+.|++.++. +|++|||||||+. .++|+++|++||.++. |+|+||+|+||||+|||+.+..+ .
T Consensus 248 l~~y~~~~~~~~P~rIiihrdg~~-------~~~E~~~i~~a~~~~~----~~i~~I~V~k~~~~R~f~~~~~~-----~ 311 (404)
T cd04659 248 LEGYRESHRGRDPKRLVLHKDGRF-------TDEEIEGLKEALEELG----IKVDLVEVIKSGPHRLFRFGTYP-----N 311 (404)
T ss_pred HHHHHHHcCCCCCeEEEEECCCCC-------CHHHHHHHHHHHHhhC----ceEEEEEEEecCCcceEEecCCC-----C
Confidence 9999999988 9999999999993 7999999999999874 89999999999999999976532 1
Q ss_pred CCCCccceeecccccCCCcCceeeccccCc--------cccccCceEEEEecCCCCCHHHHHHHHHHhhccccccCC-Cc
Q 001489 923 SGNILPGTVVDSKICHPTEFDFYLCSHAGI--------QGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTR-SV 993 (1068)
Q Consensus 923 ~~N~~pGTVVD~~It~p~~~DFyL~Sh~~~--------qGTarPthY~VL~De~~~~~d~Lq~LT~~LCy~y~r~t~-sV 993 (1068)
..||++|||||.. .+||||++|... +||+||+| |++|+.+++.|+|+++||.|||+|+|++. ++
T Consensus 312 ~~np~~GT~v~~~-----~~~~~L~s~g~~~~~~~~~~~gtp~Pl~--v~~~~~~~~~~~l~~~~~~Lt~~~~n~~~~~~ 384 (404)
T cd04659 312 GFPPRRGTYVKLS-----DDEGLLWTHGSVPKYNTYPGMGTPRPLL--LRRHSGNTDLEQLASQILGLTKLNWNSFQFYS 384 (404)
T ss_pred CCCCCCceEEEeC-----CCeEEEEecCCccccccCCCCCCCCcEE--EEEccCCCCHHHHHHHHHHHhhcCcCCCCCCC
Confidence 2799999999954 599999999886 99999999 88899999999999999999999999988 99
Q ss_pred cccchhHHHHHHHHHhh
Q 001489 994 SIVPPAYYAHLAAFRAR 1010 (1068)
Q Consensus 994 Sip~P~yYA~l~a~Rar 1010 (1068)
++|+|+||||++|+...
T Consensus 385 ~lP~ti~YA~~~a~~~~ 401 (404)
T cd04659 385 RLPVTIHYADRVAKLLK 401 (404)
T ss_pred CcceEEeHHHHHHHHHh
Confidence 99999999999998654
No 9
>PF02170 PAZ: PAZ domain; InterPro: IPR003100 This domain is named after the proteins Piwi Argonaut and Zwille. It is also found in the CAF protein from Arabidopsis thaliana. The function of the domain is unknown but has been found in the middle region of a number of members of the Argonaute protein family, which also contain the Piwi domain (IPR003165 from INTERPRO) in their C-terminal region []. Several members of this family have been implicated in the development and maintenance of stem cells through the RNA-mediated gene-quelling mechanisms associated with the protein DICER. ; GO: 0005515 protein binding; PDB: 1R6Z_P 1T2R_A 1T2S_A 3MJ0_A 1VYN_A 3O3I_X 2L5C_A 3O6E_X 3O7V_X 2L5D_A ....
Probab=99.88 E-value=6.7e-23 Score=203.29 Aligned_cols=133 Identities=34% Similarity=0.609 Sum_probs=109.6
Q ss_pred ccHHHHHHHHhcCCCCCCCCChHHHHHHHHHhcCcEEEEeecCCCCceEEEeccCCCCCCceeeeecCCCcEeeHHHHHH
Q 001489 409 LPVIDFVQQLLNRDVSSRPLSDADRVKIKKALRGVRVEVTHRGNMRRKYRISGLTSQTTGELTFPVDESGTLKSVVEYFY 488 (1068)
Q Consensus 409 ~~l~d~i~~~~~~~~~~~~~~~~~~~~l~~~L~gl~V~~~~~~~~~r~~~I~~i~~~~a~~~~F~~~~~g~~iSV~~Yf~ 488 (1068)
++|+|+|.++.+.... .......+++++|+|++|.++|++. .+.|+|.+|++..+++.+|+.+ +|+.+||+|||+
T Consensus 1 ~~vld~~~~~~~~~~~---~~~~~~~~~~~~lkg~~V~~~~~~~-~r~~~I~~i~~~~~~~~~F~~~-~g~~itv~eYf~ 75 (135)
T PF02170_consen 1 QSVLDFLKEIQNFRQR---NNIKFQKKLERALKGLKVTTTYNNN-KRTYKIKGISFDPAPESTFPDN-DGKEITVAEYFK 75 (135)
T ss_dssp HHHHHHHHHHCTCSSH---HHHHHHHHHHHHHTTEEEEETTTTC-CEEEEEEEEEEEETTTSEEEET-TSEEEEHHHHHH
T ss_pred CcHHHHHHHHHhhhcc---cchHHHHHHHHHcCCcEEEEecCCC-ceEEEEeEEECCCCcceeeecC-CCceEEhHHHHH
Confidence 4799999998764321 1123444599999999999999843 3999999999999999999865 588999999999
Q ss_pred HHcCCccCCCCCceEEeccCCC--CccccccceEeccCccccccCCHHHHHHHHHHhcCC
Q 001489 489 ETYGFVIQHTQWPCLQVGNQQR--PNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQR 546 (1068)
Q Consensus 489 ~~Y~i~L~~p~lP~v~~g~~~~--~~ylP~Elc~i~~gQ~~~~kl~~~q~~~mik~a~~~ 546 (1068)
++||++|+||+||||+++...+ ++|||||||.|+++|++..++...+++.|++.+|.+
T Consensus 76 ~~Y~i~L~~p~~Pll~~~~~~~~~~~~lP~Elc~i~~~q~~~~~~~~~~~s~m~r~~~~~ 135 (135)
T PF02170_consen 76 EKYNIRLKYPDLPLLNVKSKKKKQPIYLPPELCFIVPGQRYKKKLFTCQPSIMIRFACSP 135 (135)
T ss_dssp HTCT---SSTTSEEEEECSTTTTTCEEEECCGEEEETTTBB-SS--HHHHHHHHHHHSS-
T ss_pred hhhhcccccCCCCeEEeccCCCCceEEEChhHhcccCCcHHHHhccHHHHHHHHHHHhcC
Confidence 9999999999999999998777 999999999999999999999999999999999864
No 10
>cd02846 PAZ_argonaute_like PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes.
Probab=99.84 E-value=1.9e-20 Score=180.19 Aligned_cols=113 Identities=49% Similarity=0.879 Sum_probs=98.7
Q ss_pred ccHHHHHHHHhcCCCCCCCCChHHHHHHHHHhcCcEEEEeecCCCCceEEEeccCCCCCCceeeeecCCCcEeeHHHHHH
Q 001489 409 LPVIDFVQQLLNRDVSSRPLSDADRVKIKKALRGVRVEVTHRGNMRRKYRISGLTSQTTGELTFPVDESGTLKSVVEYFY 488 (1068)
Q Consensus 409 ~~l~d~i~~~~~~~~~~~~~~~~~~~~l~~~L~gl~V~~~~~~~~~r~~~I~~i~~~~a~~~~F~~~~~g~~iSV~~Yf~ 488 (1068)
++|+|+++++++..... .+++.++.+++++|+|++|.++|++...|.|+|.+|++.++.+.+|++++.++++||+|||+
T Consensus 2 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~lkgl~v~~~~~~~~~r~~~i~~l~~~~~~~~~F~~~~~~~~isV~dYf~ 80 (114)
T cd02846 2 QPVIEFLKEFLGFDTPL-GLSDNDRRKLKKALKGLKVEVTHRGNTNRKYKIKGLSAEPASQQTFELKDGEKEISVADYFK 80 (114)
T ss_pred ccHHHHHHHHhCccccc-ccchHHHHHHHHHhCCCEEEEEcCCCCCceEEEeeccCCCccceEEEcCCCCcEEEHHHHHH
Confidence 68999999998754322 45667888999999999999999865578999999999999899998654335899999999
Q ss_pred HHcCCccCCCCCceEEeccCCCCccccccceEec
Q 001489 489 ETYGFVIQHTQWPCLQVGNQQRPNYLPMEVCKIV 522 (1068)
Q Consensus 489 ~~Y~i~L~~p~lP~v~~g~~~~~~ylP~Elc~i~ 522 (1068)
++||++|+||+||||++|+..+++|||||||.|+
T Consensus 81 ~~y~~~l~~p~lP~v~~g~~~~~~~~P~Elc~i~ 114 (114)
T cd02846 81 EKYNIRLKYPNLPCLQVGRKGKPNYLPMELCNIV 114 (114)
T ss_pred HHcCCcccCCCCCEEEeCCCCCCcEecceeEEeC
Confidence 9999999999999999999888999999999984
No 11
>cd02825 PAZ PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the piwi and Dicer families. PAZ functions as a nucleic-acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes. This parent model also contains structures of an archaeal PAZ domain.
Probab=99.82 E-value=4.1e-20 Score=177.60 Aligned_cols=112 Identities=29% Similarity=0.430 Sum_probs=98.1
Q ss_pred CccHHHHHHHHhcCCCCCCCCChHHHHHHHHHhcCcEEEEeecCCCCceEEEeccCCCCCCceeeeecCCCcEeeHHHHH
Q 001489 408 PLPVIDFVQQLLNRDVSSRPLSDADRVKIKKALRGVRVEVTHRGNMRRKYRISGLTSQTTGELTFPVDESGTLKSVVEYF 487 (1068)
Q Consensus 408 ~~~l~d~i~~~~~~~~~~~~~~~~~~~~l~~~L~gl~V~~~~~~~~~r~~~I~~i~~~~a~~~~F~~~~~g~~iSV~~Yf 487 (1068)
.++|+|+++++++.+...+.+.+.++.++.++|+|++|.++|++ .++.|+|.+|++.++++. |.. .+|+++||+|||
T Consensus 1 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkg~~V~~~h~~-~~r~y~i~~i~~~~a~~~-f~~-~~~~~isv~dYf 77 (115)
T cd02825 1 ADPVIETMCKFPKDREIDTPLLDSPREEFTKELKGLKVEDTHNP-LNRVYRPDGETRLKAPSQ-LKH-SDGKEITFADYF 77 (115)
T ss_pred CccHHHHHHHHhcccccccccchHHHHHHHHHcCCCEEEEecCC-CceEEEEeeEECCCChhh-eec-CCCCEEEHHHHH
Confidence 36899999999876555566777788999999999999999984 468999999999999888 763 347899999999
Q ss_pred HHHcCCccCCCCCceEEeccC---CCCccccccceEec
Q 001489 488 YETYGFVIQHTQWPCLQVGNQ---QRPNYLPMEVCKIV 522 (1068)
Q Consensus 488 ~~~Y~i~L~~p~lP~v~~g~~---~~~~ylP~Elc~i~ 522 (1068)
+++||++|+||+||||+++++ .+++|||||||.|+
T Consensus 78 ~~kY~~~l~~p~~Pll~~~~~~~~~~~~~lp~Elc~i~ 115 (115)
T cd02825 78 KERYNLTLTDLNQPLLIVKFSSKKSYSILLPPELCVIT 115 (115)
T ss_pred HHHcCCcccCCCCCEEEecCcccCCCceEEchheEEeC
Confidence 999999999999999999987 67899999999974
No 12
>cd02845 PAZ_piwi_like PAZ domain, Piwi_like subfamily. In multi-cellular organisms, the Piwi protein appears to be essential for the maintenance of germline stem cells. In the Drosophila male germline, Piwi was shown to be involved in the silencing of retrotransposons in the male gametes. The Piwi proteins share their domain architecture with other members of the argonaute family. The PAZ domain has been named after the proteins Piwi, Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might
Probab=99.74 E-value=4.1e-18 Score=163.22 Aligned_cols=106 Identities=26% Similarity=0.388 Sum_probs=90.7
Q ss_pred ccHHHHHHHHhcCCCCCCCCChHHHHHHHHHhcCcEEEEeecCCCCceEEEeccCCCCCCceeeeecCCCcEeeHHHHHH
Q 001489 409 LPVIDFVQQLLNRDVSSRPLSDADRVKIKKALRGVRVEVTHRGNMRRKYRISGLTSQTTGELTFPVDESGTLKSVVEYFY 488 (1068)
Q Consensus 409 ~~l~d~i~~~~~~~~~~~~~~~~~~~~l~~~L~gl~V~~~~~~~~~r~~~I~~i~~~~a~~~~F~~~~~g~~iSV~~Yf~ 488 (1068)
.+|+|++.++++... ....+.+++++|+|++|.++|+ ++.|+|.+|+++.++.++|+.. ++..+||+|||+
T Consensus 2 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~g~~V~t~yn---~k~Y~I~~I~~~~~p~s~F~~~-~~~~~S~~~Yy~ 72 (117)
T cd02845 2 TTVLDRMHKLYRQET-----DERFREECEKELIGSIVLTRYN---NKTYRIDDIDFDKTPLSTFKKS-DGTEITFVEYYK 72 (117)
T ss_pred eeHHHHHHHHHHhcc-----cHHHHHHHHHHcCCCEEEEeeC---CeEEEEeEecCCCCccccCcCC-CCCeeeHHHHHH
Confidence 478999998876421 1246788999999999999996 6899999999999999999743 346899999999
Q ss_pred HHcCCccCCCCCceEEeccCC--------CCccccccceEecc
Q 001489 489 ETYGFVIQHTQWPCLQVGNQQ--------RPNYLPMEVCKIVE 523 (1068)
Q Consensus 489 ~~Y~i~L~~p~lP~v~~g~~~--------~~~ylP~Elc~i~~ 523 (1068)
++||+.|+||+||||+++.++ +++|||||||.|+.
T Consensus 73 ~kY~i~I~~~~qPLL~~~~k~~~~~~~~~~~iyL~pElC~ltg 115 (117)
T cd02845 73 KQYNIEITDLNQPLLVSRPKRRDPRGGEKEPIYLIPELCFLTG 115 (117)
T ss_pred HHcCCccccCCCCcEEeeccccccCCCCCcEEEEchHHhhhcC
Confidence 999999999999999998643 47999999999983
No 13
>PF08699 DUF1785: Domain of unknown function (DUF1785); InterPro: IPR014811 This region is found in argonaute [] proteins and often co-occurs with IPR003103 from INTERPRO and IPR003165 from INTERPRO. ; PDB: 1R6Z_P 3MJ0_A 4EI1_A 4F3T_A 4EI3_A 1R4K_A.
Probab=99.47 E-value=1.5e-14 Score=117.22 Aligned_cols=52 Identities=62% Similarity=1.081 Sum_probs=42.1
Q ss_pred cccCccccCCCCCCcccCCCCeEEEeeceeeecccCCeeEEeeecceeeeecC
Q 001489 356 CPVGRSFYSPDLGRRQPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEP 408 (1068)
Q Consensus 356 ~~~Gr~ff~~~~~~~~~lg~gle~~~G~~~Svr~~~~~l~LniDvs~~~F~~~ 408 (1068)
+.+||+||+++... .+|++|+|+|+|||+||||++++|+|||||++++||++
T Consensus 1 ~~vgrsFF~~~~~~-~~l~~Gle~~rG~~qSvRp~~~~l~lNvDvs~~aF~~p 52 (52)
T PF08699_consen 1 TAVGRSFFPPSGGP-VDLGGGLEAWRGFFQSVRPTQGGLLLNVDVSHTAFYKP 52 (52)
T ss_dssp EEETTEEEE-------EEETTEEEEEEEEEEEEEETTEEEEEEECCEECCC--
T ss_pred CccccccCCCCCCC-ccCCCcEEEeEeEEeeeEEcCCCCEEEEeCceeeEECc
Confidence 36899999876433 78999999999999999999999999999999999975
No 14
>cd02844 PAZ_CAF_like PAZ domain, CAF_like subfamily. CAF (for carpel factory) is a plant homolog of Dicer. CAF has been implicated in flower morphogenesis and in early Arabidopsis development and might function through posttranscriptional regulation of specific mRNA molecules. PAZ domains are named after the proteins Piwi, Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic-acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes.
Probab=99.45 E-value=9.6e-14 Score=135.96 Aligned_cols=84 Identities=31% Similarity=0.532 Sum_probs=71.2
Q ss_pred HHHHhcCcEEEEeecCCCCceEEEeccCCCCCCceeeeecCCCcEeeHHHHHHHHcCCccCCCCCceEEecc--------
Q 001489 436 IKKALRGVRVEVTHRGNMRRKYRISGLTSQTTGELTFPVDESGTLKSVVEYFYETYGFVIQHTQWPCLQVGN-------- 507 (1068)
Q Consensus 436 l~~~L~gl~V~~~~~~~~~r~~~I~~i~~~~a~~~~F~~~~~g~~iSV~~Yf~~~Y~i~L~~p~lP~v~~g~-------- 507 (1068)
..+.|+|++|.++|+ +|.|+|.+|+ +.+++++|+.++.++.+||+|||+++|||+|+||+||||++..
T Consensus 27 ~~~~l~g~~V~t~hn---~r~Y~I~~i~-~~~p~s~F~~~~~~~~~Sy~eYy~~kY~i~L~~~~QPLL~~~~~~~~~NlL 102 (135)
T cd02844 27 CACDLKGSVVTAPHN---GRFYVISGIL-DLNANSSFPGKEGLGYATYAEYFKEKYGIVLNHPNQPLLKGKQIFNLHNLL 102 (135)
T ss_pred cHHHhcCCEEEEcCC---CcEEEEEEEc-CCCccCcccCCCCCceeeHHHHHHHHhCceeccCCcceEEEecccccceec
Confidence 467899999999997 7999999999 8999999986553367999999999999999999999999751
Q ss_pred ------------CCC---CccccccceEecc
Q 001489 508 ------------QQR---PNYLPMEVCKIVE 523 (1068)
Q Consensus 508 ------------~~~---~~ylP~Elc~i~~ 523 (1068)
+.+ .++||||||.+.+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~v~L~PELC~~~~ 133 (135)
T cd02844 103 HNRFEEKGESEEKEKDRYFVELPPELCSVID 133 (135)
T ss_pred ccccccccccccccccceEEEeChHHhcccc
Confidence 011 4699999998863
No 15
>PF12764 Gly-rich_Ago1: Glycine-rich region of argonaut; InterPro: IPR024357 This domain is found in the N terminus of some argonaut proteins. Argonaut (AGO) proteins are involved in RNA-mediated post-transcriptional gene silencing [].
Probab=99.25 E-value=2.1e-11 Score=108.45 Aligned_cols=99 Identities=63% Similarity=1.000 Sum_probs=69.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCccCCCCCCCCCc
Q 001489 87 TSEYQGRGRGGPPQPGGRGGYGGGRGGVGMGSGGRGGHSGGPTRSSQIPELHQATPTPFSSGVMTQPTQSQAGSSSHSPE 166 (1068)
Q Consensus 87 ~~~~~g~g~g~~~~~gg~g~~~gg~~g~g~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (1068)
...|+++|+|++...||.++|+||++|+ +...|+++++.++++|||++++++++.++++++.+++++.++++
T Consensus 3 p~eYqgrGRGgp~~qgG~~~yGggrgg~--------~ps~G~p~r~~~PELHQAt~~~yQa~v~~qp~pSea~sss~p~e 74 (104)
T PF12764_consen 3 PPEYQGRGRGGPPQQGGRPGYGGGRGGG--------GPSGGGPPRPSVPELHQATQVQYQAPVSSQPSPSEASSSSQPPE 74 (104)
T ss_pred CccccccCCCCCcccCCCCCCCCCCCCC--------CCCCCCCcCCCcchhhcccCCcccCcccCCCCcCcCCCccCCCC
Confidence 3446666666555455555553332221 12223455667899999999999999998888888888888866
Q ss_pred chh--hhHhhhcccCCccCCCCCCCCCCC
Q 001489 167 LSE--VSQQFQQLSLPEEVSSSQVIQPAP 193 (1068)
Q Consensus 167 ~~~--~~~~~~~~~~~~~~s~~~~~~~~p 193 (1068)
... ++++|++|++..++++++++.++|
T Consensus 75 ~s~~qv~QQfqqLsi~~e~s~sQaiQp~P 103 (104)
T PF12764_consen 75 PSTVQVTQQFQQLSIQQESSPSQAIQPAP 103 (104)
T ss_pred cchHHHHHHHHHHhhccCCCcccccCCCC
Confidence 655 699999999988887777776554
No 16
>COG1431 Argonaute homolog, implicated in RNA metabolism [Translation, ribosomal structure and biogenesis]
Probab=99.08 E-value=3.1e-09 Score=121.56 Aligned_cols=300 Identities=19% Similarity=0.159 Sum_probs=173.8
Q ss_pred HHHHHHHHHHHHHHHhcC-cccCCC-CcccCCCCChhhHHHHHHHHHHHHHhhccCCCCceEEEEEeeCCCCchhhhhhh
Q 001489 639 SIARGFCFELAQMCYISG-MAFNPE-PVIPPISARPEHVEKVLKTRYHDAMTKLGQGKELDLLIVILPDNNGSLYGDLKR 716 (1068)
Q Consensus 639 ~~~~~f~~~L~~~~~~~G-m~i~~~-p~~~~~~~~~~~~~~~l~~~~~~a~~~~~~~~~~~lvlvilp~~~~~~Y~~IK~ 716 (1068)
..++.|.+.|..+.+..+ +...-. +-+.....++..- ..|..+++++ ....++..-+-++...|+.+|+
T Consensus 356 ~rlk~~~kkv~~~fkn~n~i~~k~eg~~l~~a~~r~~~k-ddl~~iIkei--------d~ee~~k~e~ykdd~~YailKr 426 (685)
T COG1431 356 TRLKSTIKKVVYGFKNSNGIDWKVEGLTLHVAGKRPKMK-DDLTKIIKEI--------DVEELKKQEMYKDDVKYAILKR 426 (685)
T ss_pred hHHHHHHHHHHHHHHhccchhhhcccceeeecccchhhh-ccchhhhhhh--------hhhhhccccccccchHHHHHHh
Confidence 457888999999888776 433211 2222222222111 2233333321 1122333444566678999998
Q ss_pred hhhcccCceeeeeeccccccccHHHHHHHHHHHHhhcCCcccccccccccCCCccCCCCeEEEEEEecCCCCCCCCCCee
Q 001489 717 ICETDLGLVSQCCLTKHVFKMSKQYMANVALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSPSI 796 (1068)
Q Consensus 717 ~~d~~~GI~TQcv~~~~~~k~~~q~~~Ni~lKiN~KlGG~n~~l~~~~~~~~p~~~~~~tmiiG~DV~Hp~~g~~~~pSi 796 (1068)
.+.=|++|.++-.+..|.-+-++.|+|+|+-||-+|+++.+.+. ...-+-|+|+||+.-+-+....-.+
T Consensus 427 ---ld~~ipsqvil~~n~rk~~Kg~~tnla~~~~~ktlgqpY~~r~~--------~gpvDaivGlDvsr~~~gn~tV~gc 495 (685)
T COG1431 427 ---LDETIPSQVILDPNNRKPYKGTKTNLASKRYLKTLGQPYLKRNG--------LGPVDAIVGLDVSRVSEGNWTVEGC 495 (685)
T ss_pred ---hcccCcceeeeccccCCcchhhhhHHHHHHHHHhcCCceeeecc--------CCCccceeeeeeeEEeeCCeEEeee
Confidence 44669999999999887778899999999999999999976542 1223589999999876432111001
Q ss_pred EecCCCcceeeeEEEEccCCchhhhhhhccccCCCcCcchhHHHHHHHHHHHH--HcC-CCCceEEEEecCCChhHHHHH
Q 001489 797 AADWPEVTKYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISFRR--ATG-QKPQRIIFYRDGVSEGQFYQV 873 (1068)
Q Consensus 797 aad~~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~p~~~~~~~~mi~~~L~~f~~--~~~-~~P~~IIiYRDGVSEgQ~~~V 873 (1068)
. +|..-+. +++.--. .-.|.- ++.+....+-+.. +.+ ..-.+|++.|||- +
T Consensus 496 t-----------~~f~seg--~l~eyy~--t~tpa~----GErl~~~g~yle~~~~~gfe~~n~iV~lRDG~-------l 549 (685)
T COG1431 496 T-----------SCFVSEG--GLEEYYH--TVTPAL----GERLETSGRYLEKMNWRGFESRNLIVTLRDGK-------L 549 (685)
T ss_pred e-----------EEEeccC--ceEEeee--cccCCc----cchhhhHHHHHHHHHhhhhhccCeeEEEecCc-------c
Confidence 1 1111111 1111000 000111 1111111111111 112 2346799999994 5
Q ss_pred HHHHHHHHHHHHHhhCCCCCCCEEEEEEeecccccccccCCCCCCCCCCCCCCccceee------cccccCCCcCceeec
Q 001489 874 LLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHHDRNAVDRSGNILPGTVV------DSKICHPTEFDFYLC 947 (1068)
Q Consensus 874 l~~El~~I~~a~~~~~~~y~P~it~Ivv~KrhhtRff~~~~~~~~~~~~~~N~~pGTVV------D~~It~p~~~DFyL~ 947 (1068)
...|+.++++.=.++ .-.++++.+.|. +-+||..+..- + |-.| ++.++.|.
T Consensus 550 ~~~E~aavkeyg~el----gsn~ev~~i~kn-Np~vf~~e~~i-------~----g~f~~~~~s~~h~~~~~y------- 606 (685)
T COG1431 550 VAGEIAAVKEYGGEL----GSNPEVNRILKN-NPWVFAIEGEI-------W----GAFVRLDGSTVHLCCSPY------- 606 (685)
T ss_pred chHHHHHHHHHhhhc----CCChhhheeccc-CCeEEEeccee-------e----eEEEecCCcccccccCCC-------
Confidence 678888877765544 244566666554 55599875421 1 3333 23334332
Q ss_pred cccCccccccCceEEEEecCCCCCHHHHHHHHHHhhccccccCCC--ccccchhHHHHHHHHHhhh
Q 001489 948 SHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRS--VSIVPPAYYAHLAAFRARF 1011 (1068)
Q Consensus 948 Sh~~~qGTarPthY~VL~De~~~~~d~Lq~LT~~LCy~y~r~t~s--VSip~P~yYA~l~a~Rar~ 1011 (1068)
.....||-+|..-- .+-+.-..++-.|.|+|+-|.+-+... .+||||++|||++.+.||.
T Consensus 607 -npv~~gT~~pi~~r---~~~g~l~~e~i~lv~dLT~mNys~~~g~~~rlPApvhYaDk~~kl~~~ 668 (685)
T COG1431 607 -NPVRRGTPRPIALR---RRDGKLDGELIGLVHDLTAMNYSNPSGTWSRLPAPVHYADKASKLARY 668 (685)
T ss_pred -CceecCCCcccccc---cccCccchhhHHHHHHhhhhccCCCCCceecCCcchhhhHHHHHHHhc
Confidence 23556888887633 333333344444999999999888887 9999999999999999886
No 17
>cd02843 PAZ_dicer_like PAZ domain, dicer_like subfamily. Dicer is an RNAse involved in cleaving dsRNA in the RNA interference pathway. It generates dsRNAs which are approximately 20 bp long (siRNAs), which in turn target hydrolysis of homologous RNAs. PAZ domains are named after the proteins Piwi Argonaut and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the piwi and Dicer families. PAZ functions as a nucleic-acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes.
Probab=98.56 E-value=9.3e-08 Score=90.56 Aligned_cols=67 Identities=18% Similarity=0.241 Sum_probs=58.9
Q ss_pred HHhcCcEEEEeecCCC-CceEEEeccCCCCCCceeeeecCCCcEeeHHHHHHHHcCCccCCCCCceEEecc
Q 001489 438 KALRGVRVEVTHRGNM-RRKYRISGLTSQTTGELTFPVDESGTLKSVVEYFYETYGFVIQHTQWPCLQVGN 507 (1068)
Q Consensus 438 ~~L~gl~V~~~~~~~~-~r~~~I~~i~~~~a~~~~F~~~~~g~~iSV~~Yf~~~Y~i~L~~p~lP~v~~g~ 507 (1068)
+.+.|..|.+.|++.. .++|+|.+|.++.++.++|+.+ + .+|++|||++||||.|++++||+|.|+.
T Consensus 39 ~~~~g~vV~t~YnN~d~pK~Y~V~dI~~dltP~S~F~~~--~-~~Ty~eYyk~KY~I~I~~~~QPLL~v~~ 106 (122)
T cd02843 39 EDYQDAVVMPWYRNFDQPQYFYVAEICTDLRPLSKFPGP--E-YETFEEYYKKKYKLDIQNLNQPLLDVDH 106 (122)
T ss_pred HHhCCCEEeecccCCCCCeEEEEEEEcCCCCCCCCCCCC--C-CccHHHHHHHhcCeEeccCCCCcEeecC
Confidence 6789999999998422 3899999999999999999743 3 6999999999999999999999999964
No 18
>PF12764 Gly-rich_Ago1: Glycine-rich region of argonaut; InterPro: IPR024357 This domain is found in the N terminus of some argonaut proteins. Argonaut (AGO) proteins are involved in RNA-mediated post-transcriptional gene silencing [].
Probab=96.24 E-value=0.0051 Score=55.82 Aligned_cols=50 Identities=16% Similarity=0.184 Sum_probs=34.1
Q ss_pred CCCCCCCCCCCccccC----CCCCCCCCCCCCCCccCCCCCCCCCcchhhhHhh
Q 001489 125 SGGPTRSSQIPELHQA----TPTPFSSGVMTQPTQSQAGSSSHSPELSEVSQQF 174 (1068)
Q Consensus 125 ~~~~~~~~~~~~~~~a----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (1068)
...++.++|+..+||| .+.|..+.+++.++++.+..++++++++++.++.
T Consensus 40 ~~~PELHQAt~~~yQa~v~~qp~pSea~sss~p~e~s~~qv~QQfqqLsi~~e~ 93 (104)
T PF12764_consen 40 PSVPELHQATQVQYQAPVSSQPSPSEASSSSQPPEPSTVQVTQQFQQLSIQQES 93 (104)
T ss_pred CCcchhhcccCCcccCcccCCCCcCcCCCccCCCCcchHHHHHHHHHHhhccCC
Confidence 3558999999999999 2444445555455555555557889999876654
No 19
>PTZ00146 fibrillarin; Provisional
Probab=94.85 E-value=0.05 Score=60.67 Aligned_cols=9 Identities=33% Similarity=0.789 Sum_probs=3.9
Q ss_pred CCCCCCCCc
Q 001489 205 PGRGSTGTR 213 (1068)
Q Consensus 205 P~~Gt~G~~ 213 (1068)
|+.-..|.+
T Consensus 84 pg~~vygek 92 (293)
T PTZ00146 84 PGESVYGEK 92 (293)
T ss_pred CCcccccce
Confidence 443344444
No 20
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=93.86 E-value=0.23 Score=52.73 Aligned_cols=6 Identities=50% Similarity=0.717 Sum_probs=2.6
Q ss_pred ceeeec
Q 001489 383 FYQSIR 388 (1068)
Q Consensus 383 ~~~Svr 388 (1068)
|..||+
T Consensus 257 fvisik 262 (317)
T KOG1596|consen 257 FVISIK 262 (317)
T ss_pred EEEEEe
Confidence 334444
No 21
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=93.35 E-value=0.34 Score=51.53 Aligned_cols=6 Identities=67% Similarity=1.132 Sum_probs=2.6
Q ss_pred cCceEE
Q 001489 272 GRKSLY 277 (1068)
Q Consensus 272 G~~~ly 277 (1068)
|.|.||
T Consensus 157 GsKVLY 162 (317)
T KOG1596|consen 157 GSKVLY 162 (317)
T ss_pred CceEEE
Confidence 344444
No 22
>PF13032 DUF3893: Domain of unknown function (DUF3893)
Probab=87.70 E-value=0.98 Score=44.95 Aligned_cols=57 Identities=18% Similarity=0.164 Sum_probs=46.6
Q ss_pred cccCceEEEEecCCCCCHHHHHHHHHHhhccccccCCCccccchhHHHHHHHHHhhhhcCc
Q 001489 955 TSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEP 1015 (1068)
Q Consensus 955 TarPthY~VL~De~~~~~d~Lq~LT~~LCy~y~r~t~sVSip~P~yYA~l~a~Rar~~~~~ 1015 (1068)
.....=.+|+.=...-.+++|-.|||.||+.+.-+-..+.+|-|+++|.+ ++.|+-+
T Consensus 66 ~~~ilEI~V~~~~~~d~~~~lA~~vh~LR~~~~~~~~~l~lP~PLHlak~----~~eYi~~ 122 (138)
T PF13032_consen 66 NPQILEITVLGCQPEDDPEALAKLVHYLRRSPPLYDENLALPLPLHLAKQ----AKEYILP 122 (138)
T ss_pred CCCceEEEEeccCCCCCHHHHHHHHHHHHhCcccccccccCcccHHHHHH----HHHHccc
Confidence 34455677777665678999999999999999999999999999999987 4567665
No 23
>COG4371 Predicted membrane protein [Function unknown]
Probab=86.95 E-value=1.2 Score=47.44 Aligned_cols=17 Identities=18% Similarity=0.372 Sum_probs=10.5
Q ss_pred CcchhhhHhhhcccCCc
Q 001489 165 PELSEVSQQFQQLSLPE 181 (1068)
Q Consensus 165 ~~~~~~~~~~~~~~~~~ 181 (1068)
+++..+..++++++.+.
T Consensus 155 A~a~elk~eL~~iA~~a 171 (334)
T COG4371 155 AEADELKSELQRIAQQA 171 (334)
T ss_pred hhhHHHHHHHHHHHHhc
Confidence 55556667777766543
No 24
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=85.78 E-value=8.1 Score=46.96 Aligned_cols=12 Identities=17% Similarity=0.445 Sum_probs=7.8
Q ss_pred eEEeeeEEeecC
Q 001489 215 IVKANHFFAELP 226 (1068)
Q Consensus 215 ~l~aN~f~v~~~ 226 (1068)
.|.+|-|+.++.
T Consensus 869 V~~~~n~Pf~v~ 880 (944)
T KOG4307|consen 869 VLSCNNFPFDVT 880 (944)
T ss_pred EEEecCCCcccc
Confidence 577777775544
No 25
>smart00157 PRP Major prion protein. The prion protein is a major component of scrapie-associated fibrils in Creutzfeldt-Jakob disease, kuru, Gerstmann-Straussler syndrome and bovine spongiform encephalopathy.
Probab=78.91 E-value=9.8 Score=39.02 Aligned_cols=11 Identities=27% Similarity=0.283 Sum_probs=6.4
Q ss_pred CCceeeeEEEE
Q 001489 227 DKDLHQYDVTI 237 (1068)
Q Consensus 227 ~~~iy~YdV~i 237 (1068)
+.+|-+|.|+-
T Consensus 158 N~tv~~~~~~~ 168 (217)
T smart00157 158 NITIKQHTVTT 168 (217)
T ss_pred hhheeeeEecc
Confidence 44566676653
No 26
>PRK11617 endonuclease V; Provisional
Probab=78.35 E-value=28 Score=37.57 Aligned_cols=40 Identities=13% Similarity=0.172 Sum_probs=31.9
Q ss_pred CCCCCHHHHHHHHHHhhccccccCCCccccchhHHHHHHHHHhhhhc
Q 001489 967 ENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYM 1013 (1068)
Q Consensus 967 e~~~~~d~Lq~LT~~LCy~y~r~t~sVSip~P~yYA~l~a~Rar~~~ 1013 (1068)
-+..+.|+--.++-.+|- --++|.|+..||++|.+.+...
T Consensus 178 Gh~i~l~~A~~~v~~~~~-------~yRlPePlR~Ad~ls~~~~~~~ 217 (224)
T PRK11617 178 GHRVSLDSALAWVQRCMK-------GYRLPEPTRWADALASRRPAFV 217 (224)
T ss_pred CCCcCHHHHHHHHHHHcc-------CCCCCHHHHHHHHHHhhhhhhh
Confidence 356788888888988873 3379999999999998887643
No 27
>PF05642 Sporozoite_P67: Sporozoite P67 surface antigen; InterPro: IPR008845 This family consists of several Theileria P67 surface antigens. A stage specific surface antigen of Theileria parva, p67, is the basis for the development of an anti-sporozoite vaccine for the control of East Coast fever (ECF) in Bos taurus. The antigen has been shown to contain five distinct linear peptide sequences recognised by sporozoite-neutralising murine monoclonal antibodies [].
Probab=70.22 E-value=79 Score=38.10 Aligned_cols=20 Identities=20% Similarity=0.469 Sum_probs=12.1
Q ss_pred cCCHHHHHHHHHHhcCCchH
Q 001489 530 RLNERQITALLKVTCQRPHE 549 (1068)
Q Consensus 530 kl~~~q~~~mik~a~~~P~~ 549 (1068)
.|++++...++......|.+
T Consensus 587 dlteeev~kilde~vkd~s~ 606 (727)
T PF05642_consen 587 DLTEEEVKKILDELVKDPSD 606 (727)
T ss_pred ccCHHHHHHHHHHHhcCcch
Confidence 56666666666665555544
No 28
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=63.19 E-value=31 Score=40.20 Aligned_cols=12 Identities=8% Similarity=0.351 Sum_probs=5.5
Q ss_pred cCCCceeeeEEE
Q 001489 225 LPDKDLHQYDVT 236 (1068)
Q Consensus 225 ~~~~~iy~YdV~ 236 (1068)
+....+--|+|+
T Consensus 182 ~rG~kVAsF~i~ 193 (641)
T KOG3915|consen 182 LRGAKVASFTIE 193 (641)
T ss_pred ecCceeeEEEec
Confidence 334444445543
No 29
>PHA00370 III attachment protein
Probab=60.35 E-value=27 Score=37.69 Aligned_cols=7 Identities=14% Similarity=0.520 Sum_probs=2.9
Q ss_pred EEEEEEE
Q 001489 309 FKVVIKL 315 (1068)
Q Consensus 309 ~~V~I~~ 315 (1068)
|++.|-.
T Consensus 256 Ye~~I~C 262 (297)
T PHA00370 256 YEFIIGC 262 (297)
T ss_pred hhhhhcc
Confidence 4444433
No 30
>PF08459 UvrC_HhH_N: UvrC Helix-hairpin-helix N-terminal; InterPro: IPR001162 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []. The UvrC proteins contain 4 conserved regions: a central region which interacts with UvrB (Uvr domain), a Helix hairpin Helix (HhH) domain important for 5 prime incision of damage DNA and the homology regions 1 and 2 of unknown function. UvrC homology region 2 is specific for UvrC proteins, whereas UvrC homology region 1 is also shared by few other nucleases. Proteins that contain the UvrC homology region 1, IPR000305 from INTERPRO, are listed below: Prokaryotic UvrC proteins. Bacteriophage T4 END2 protein. Small subunit of ribonucleotide reductase enzyme. T4 TEV1 protein. Endonuclease specific to the thymidylate synthase (td) gene splice junction. Found in putative intron-homing endonucleases encoded by group I introns of fungi and phage. Mycobacterium hypothetical protein Y002. Exonuclease by similarity. Bacillus subtilis hypothetical protein YURQ. ; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3C65_A 2NRZ_A 2NRR_A 2NRX_A 2NRV_A 2NRT_A 2NRW_A.
Probab=56.58 E-value=24 Score=35.88 Aligned_cols=103 Identities=21% Similarity=0.316 Sum_probs=46.4
Q ss_pred CCCeEEEEEEecCCCCCCCCCCeeEe--c-CCCcceeeeEEEEccCCchhhhhhhccccCCCcCcchhHHHHHHHHHHHH
Q 001489 773 DRPTIIFGADVTHPHPGEDSSPSIAA--D-WPEVTKYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISFRR 849 (1068)
Q Consensus 773 ~~~tmiiG~DV~Hp~~g~~~~pSiaa--d-~~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~p~~~~~~~~mi~~~L~~f~~ 849 (1068)
+.|.-|-++|+||-... ...-|++. + .+.-..|. .+.+... +-.+|. .+|.|.|..+++
T Consensus 9 ~~P~rIE~fDiSh~~G~-~~Vgs~Vvf~~G~~~k~~YR-~f~i~~~--~~~dDy--------------~~M~Evl~RR~~ 70 (155)
T PF08459_consen 9 KLPRRIECFDISHIQGS-DTVGSMVVFENGKPDKSEYR-RFNIKTV--DGGDDY--------------AAMREVLTRRFK 70 (155)
T ss_dssp S--SEEEEEEEEECTTT-CEEEEEEEEETTEE-GGG-E-EEEEE----STT-HH--------------HHHHHHHHHHHC
T ss_pred CCCCEEEEEECcccCCc-ccEEEEEEEECCccChhhCc-eEecCCC--CCCcHH--------------HHHHHHHHHHHh
Confidence 34678999999997532 22223333 1 01112222 2222211 112555 456666655553
Q ss_pred H----cCCCCceEEEEecCCChhHHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEEeec--cccc
Q 001489 850 A----TGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKR--HHTR 908 (1068)
Q Consensus 850 ~----~~~~P~~IIiYRDGVSEgQ~~~Vl~~El~~I~~a~~~~~~~y~P~it~Ivv~Kr--hhtR 908 (1068)
. ...+|+-||| || +.||+. +.+++++++.- . |.+|-..|+ |.|+
T Consensus 71 ~~~~~~~~lPDLilI--DG-G~gQl~--------aa~~~l~~lgl--~--i~viglaK~~~~~t~ 120 (155)
T PF08459_consen 71 RLKEEKEPLPDLILI--DG-GKGQLN--------AAKEVLKELGL--N--IPVIGLAKNDEHKTG 120 (155)
T ss_dssp CCHHHT----SEEEE--SS-SHHHHH--------HHHHHHHCTT--------EEEEESSSSE---
T ss_pred cccccCCCCCCEEEE--cC-CHHHHH--------HHHHHHHHcCC--C--eEEEEEEeccccccc
Confidence 2 3368999998 77 566664 44677776632 3 555555554 5555
No 31
>TIGR00194 uvrC excinuclease ABC, C subunit. This family consists of the DNA repair enzyme UvrC, an ABC excinuclease subunit which interacts with the UvrA/UvrB complex to excise UV-damaged nucleotide segments.
Probab=53.15 E-value=74 Score=39.50 Aligned_cols=107 Identities=21% Similarity=0.230 Sum_probs=57.8
Q ss_pred eEEEEEEecCCCCCCCCCCeeEe--c-CCCcceeeeEEEEccCCchhhhhhhccccCCCcCcchhHHHHHHHHHHHHH--
Q 001489 776 TIIFGADVTHPHPGEDSSPSIAA--D-WPEVTKYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISFRRA-- 850 (1068)
Q Consensus 776 tmiiG~DV~Hp~~g~~~~pSiaa--d-~~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~p~~~~~~~~mi~~~L~~f~~~-- 850 (1068)
..|-++|+||-... ....|++. | -+.-..|. ...+.. .+-.+|. .||+|.|...++.
T Consensus 382 ~rIE~fDiSh~~G~-~~V~smVvf~~G~~~k~~YR-~f~i~~--~~~~dDy--------------a~m~Evl~RR~~r~~ 443 (574)
T TIGR00194 382 KRIEIFDISHIDGS-QTVGSMVVFEDGKPLKASYR-RYNINS--ITGGDDY--------------AAMREVLRRRYSSIQ 443 (574)
T ss_pred CEEEEEECCccCCC-cceEEEEEEeCCccChhhCC-eeecCC--CCCCCHH--------------HHHHHHHHHHHhhhc
Confidence 67899999997643 22334333 2 01112222 111211 1113454 4566666544433
Q ss_pred c--C-CCCceEEEEecCCChhHHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEEee--cccccccccC
Q 001489 851 T--G-QKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQK--RHHTRLFANN 913 (1068)
Q Consensus 851 ~--~-~~P~~IIiYRDGVSEgQ~~~Vl~~El~~I~~a~~~~~~~y~P~it~Ivv~K--rhhtRff~~~ 913 (1068)
. . .+|+-||| || +.||+..+ .++++++. ....|.+|-..| ||.+++|..+
T Consensus 444 ~~~~~~~PDLili--DG-GkgQl~aa--------~~~l~~lg--~~~~i~viglaK~~~~~~~i~~~~ 498 (574)
T TIGR00194 444 KKNNLPLPDLILI--DG-GKGQLNAA--------LEVLKSLG--VVNKPIVIGLAKAKRHETDIFLIG 498 (574)
T ss_pred cccCCCCCCEEEE--eC-CHHHHHHH--------HHHHHHcC--CCCCCcEEEEEecCCCceEEEeCC
Confidence 1 1 48988888 77 56777644 45666663 212466777777 7778888653
No 32
>COG1515 Nfi Deoxyinosine 3'endonuclease (endonuclease V) [DNA replication, recombination, and repair]
Probab=46.44 E-value=2.3e+02 Score=30.38 Aligned_cols=49 Identities=14% Similarity=0.152 Sum_probs=33.3
Q ss_pred ccccCceEEEEecCCCCCHHHHHHHHHHhhccccccCCCccccchhHHHHHHHHHh
Q 001489 954 GTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRA 1009 (1068)
Q Consensus 954 GTarPthY~VL~De~~~~~d~Lq~LT~~LCy~y~r~t~sVSip~P~yYA~l~a~Ra 1009 (1068)
.|.+.+.=.++-=.+..+.+..-+|+.+|| +..++|.|+-.||+++.+.
T Consensus 163 ~t~~~~~pi~vS~g~~i~l~sal~l~~~l~-------~~~rlpeptr~ad~~a~~~ 211 (212)
T COG1515 163 RTKERAKPIFVSPGHRISLPSALKLAQRLS-------KGYRLPEPTRLADILAKKR 211 (212)
T ss_pred EecccCCCeEEccCCccCHHHHHHHHHHHc-------ccccCCCcccHHHHhhhhc
Confidence 344333333333344568888888898887 3478999999999998764
No 33
>PF04493 Endonuclease_5: Endonuclease V; InterPro: IPR007581 Endonuclease V is specific for single-stranded DNA, for duplex DNA that contains uracil, or that is damaged []. Matrix metalloproteinase-1 (MMP-1) is the major enzyme responsible for collagen 1 digestion. It is induced by exposure to sunlight, but is reduced with treatment of DNA repair enzyme endonuclease V []. This family consequently has potential medical importance []. This endonuclease also appears in bifunctional enzymes, such as the bifunctional methyltransferase/endonuclease in Thermoplasma acidophilum.; GO: 0004519 endonuclease activity, 0006281 DNA repair; PDB: 3GA2_A 2W36_A 3HD0_A 2W35_B 3GOC_B.
Probab=45.79 E-value=54 Score=35.01 Aligned_cols=31 Identities=16% Similarity=0.367 Sum_probs=23.5
Q ss_pred CCCHHHHHHHHHHhhccccccCCC-ccccchhHHHHHHH
Q 001489 969 KFTADGLQSLTNNLCYTYARCTRS-VSIVPPAYYAHLAA 1006 (1068)
Q Consensus 969 ~~~~d~Lq~LT~~LCy~y~r~t~s-VSip~P~yYA~l~a 1006 (1068)
..+.+..-+++.++| +. .++|-|++.||+.+
T Consensus 175 ~i~l~ta~~iv~~~~-------~~~~r~PeP~r~Ad~~t 206 (206)
T PF04493_consen 175 RISLETALEIVLKLC-------KGGYRLPEPTRLADLLT 206 (206)
T ss_dssp SS-HHHHHHHHHHTS-------STTSSS-HHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHc-------CCCCcCCCcchhhhhcC
Confidence 467888888888887 44 78999999999864
No 34
>cd06559 Endonuclease_V Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases. Endonuclease_V (EndoV) is an enzyme that can initiate repair of all possible deaminated DNA bases. EndoV cleaves the DNA strand containing lesions at the second phosphodiester bond 3' to the lesion using Mg2+ as a cofactor. EndoV homologs are conserved throughout all domains of life from bacteria to humans. EndoV is encoded by the nfi gene and nfi null mutant mice have a phenotype prone to cancer. The ability of endonuclease V to recognize mismatches and abnormal replicative DNA structures suggests that the enzyme plays an important role in DNA metabolism. The details of downstream processing for the EndoV pathway remain unknown.
Probab=44.99 E-value=77 Score=33.97 Aligned_cols=34 Identities=15% Similarity=0.257 Sum_probs=27.3
Q ss_pred CCCCCHHHHHHHHHHhhccccccCCCccccchhHHHHHHHH
Q 001489 967 ENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAF 1007 (1068)
Q Consensus 967 e~~~~~d~Lq~LT~~LCy~y~r~t~sVSip~P~yYA~l~a~ 1007 (1068)
-+..+.|+--+++-.+| +.-++|.|+..||+++.
T Consensus 174 Gh~i~l~~A~~~v~~~~-------~~~r~Pep~R~Ad~~sr 207 (208)
T cd06559 174 GHRIDLETAVELVLKCC-------KGYRLPEPTRLADLLSR 207 (208)
T ss_pred CCCcCHHHHHHHHHHHc-------cCCCCCcHHHHHHHHhc
Confidence 35678888888888876 44679999999999874
No 35
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=43.53 E-value=1e+02 Score=36.18 Aligned_cols=11 Identities=27% Similarity=0.467 Sum_probs=4.9
Q ss_pred CccccccceEe
Q 001489 511 PNYLPMEVCKI 521 (1068)
Q Consensus 511 ~~ylP~Elc~i 521 (1068)
++.+|+.-...
T Consensus 371 pvslppasv~m 381 (641)
T KOG3915|consen 371 PVSLPPASVEM 381 (641)
T ss_pred cccCCchhhHH
Confidence 44555543333
No 36
>PRK14672 uvrC excinuclease ABC subunit C; Provisional
Probab=41.04 E-value=1.7e+02 Score=36.87 Aligned_cols=107 Identities=23% Similarity=0.343 Sum_probs=58.4
Q ss_pred CCCeEEEEEEecCCCCCCCCCCeeEe--c-CCCcceeeeEEEEccCCchhhhhhhccccCCCcCcchhHHHHHHHHHHHH
Q 001489 773 DRPTIIFGADVTHPHPGEDSSPSIAA--D-WPEVTKYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISFRR 849 (1068)
Q Consensus 773 ~~~tmiiG~DV~Hp~~g~~~~pSiaa--d-~~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~p~~~~~~~~mi~~~L~~f~~ 849 (1068)
..|..|-++|+||-... ....|++. | -+.-..|. .+.+.... .-++|+ .+|.|.|...++
T Consensus 452 ~~p~rIE~fDiSh~~G~-~~VasmVvf~~G~p~k~~YR-~f~ik~~~-~~~DD~--------------asM~Evl~RR~~ 514 (691)
T PRK14672 452 RIPTLIEGFDISHLGGK-YTVASLICFKNGAPDTKNYR-LFNLRAHD-TRIDDF--------------ASMREAIARRYT 514 (691)
T ss_pred CCCCeEEEEECCccCCc-CceEEEEEEECCccChhhCC-eeeccCCC-CCCchH--------------HHHHHHHHHHhh
Confidence 35789999999997643 23334443 2 01111121 12222110 113555 466777765554
Q ss_pred Hc---CCCCceEEEEecCCChhHHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEEeecccccccc
Q 001489 850 AT---GQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFA 911 (1068)
Q Consensus 850 ~~---~~~P~~IIiYRDGVSEgQ~~~Vl~~El~~I~~a~~~~~~~y~P~it~Ivv~KrhhtRff~ 911 (1068)
+. ..+|+-||| || +.||+.. .++++.++. . .|.+|-..||.-.-|+|
T Consensus 515 r~~~~~~~PDLilI--DG-GkgQl~a--------a~~vl~elg--l--~i~vigLaKr~e~i~~~ 564 (691)
T PRK14672 515 HTPEGYTLPDLILV--DG-GIGHVSA--------AQHVLDALG--L--SIPLVGLAKRAEELFIP 564 (691)
T ss_pred cccccCCCCCEEEE--eC-CHHHHHH--------HHHHHHHcC--C--CCcEEEEEecccEEEeC
Confidence 42 258998888 77 5566654 356666663 2 47788888976444444
No 37
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=36.89 E-value=1.3e+02 Score=37.70 Aligned_cols=23 Identities=13% Similarity=0.058 Sum_probs=12.4
Q ss_pred CCCCCCCCCCcceEEeeeEEeecC
Q 001489 203 LRPGRGSTGTRCIVKANHFFAELP 226 (1068)
Q Consensus 203 ~RP~~Gt~G~~v~l~aN~f~v~~~ 226 (1068)
+|++.+. =.+-.+.-|+|-|++.
T Consensus 627 rr~nW~k-I~p~d~s~~cFWvkv~ 649 (1102)
T KOG1924|consen 627 RRFNWSK-IVPRDLSENCFWVKVN 649 (1102)
T ss_pred ccCCccc-cCccccCccceeeecc
Confidence 4555443 2445566667766554
No 38
>PRK12306 uvrC excinuclease ABC subunit C; Reviewed
Probab=36.52 E-value=2.3e+02 Score=34.81 Aligned_cols=105 Identities=21% Similarity=0.335 Sum_probs=56.6
Q ss_pred CCeEEEEEEecCCCCCCCCCCeeEe--c-CCCcceeeeEEEEccCCchhhhhhhccccCCCcCcchhHHHHHHHHHHHHH
Q 001489 774 RPTIIFGADVTHPHPGEDSSPSIAA--D-WPEVTKYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISFRRA 850 (1068)
Q Consensus 774 ~~tmiiG~DV~Hp~~g~~~~pSiaa--d-~~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~p~~~~~~~~mi~~~L~~f~~~ 850 (1068)
.|.-|-++|+||-... ....|++. | -+.-..|. ...+.. .+-.+|. .+|+|.|...+++
T Consensus 365 ~p~rIE~fDiSh~~G~-~~V~smVvf~~G~p~k~~YR-~f~Ik~--~~~~dDy--------------~~m~Evl~RR~~r 426 (519)
T PRK12306 365 PPNVIECFDISHLSGT-STVGSMVQFRNGKPDKKNYR-RFKIKT--VEGIDDF--------------ASIAEVVRRRYSR 426 (519)
T ss_pred CCCeEEEEECCccCCC-CceEEEEEEeCCccChhhcC-eeecCC--CCCCCHH--------------HHHHHHHHHHHhh
Confidence 4567999999996543 23334433 2 01111222 122221 1113454 4566666544433
Q ss_pred c----CCCCceEEEEecCCChhHHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEEeeccccccccc
Q 001489 851 T----GQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFAN 912 (1068)
Q Consensus 851 ~----~~~P~~IIiYRDGVSEgQ~~~Vl~~El~~I~~a~~~~~~~y~P~it~Ivv~KrhhtRff~~ 912 (1068)
. ..+|+-||| || +-||+..+ .+++.++. . .|.+|-..|+. .++|..
T Consensus 427 ~~~~~~~~PDLilI--DG-GkgQl~aa--------~~~l~elg--~--~i~viglaK~~-e~i~~p 476 (519)
T PRK12306 427 LLEENSELPDLIVI--DG-GKGQLSSA--------FKELRKLG--L--KIPLISIAKRE-EEIYVP 476 (519)
T ss_pred cccccCCCCCEEEE--eC-CHHHHHHH--------HHHHHHcC--C--CCcEEEEEcCc-eEEEeC
Confidence 1 148988888 77 56777644 45666663 2 47788888876 445543
No 39
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=34.09 E-value=85 Score=33.54 Aligned_cols=8 Identities=13% Similarity=0.609 Sum_probs=3.7
Q ss_pred HHHHHHcc
Q 001489 342 VLDIVLRE 349 (1068)
Q Consensus 342 ~Lniilr~ 349 (1068)
++|+|+++
T Consensus 161 ~~~~lv~k 168 (221)
T KOG0037|consen 161 FYNLLVRK 168 (221)
T ss_pred HHHHHHHH
Confidence 44444444
No 40
>PRK14667 uvrC excinuclease ABC subunit C; Provisional
Probab=31.92 E-value=2.6e+02 Score=34.69 Aligned_cols=104 Identities=20% Similarity=0.218 Sum_probs=56.8
Q ss_pred CCeEEEEEEecCCCCCCCCCCeeEe--c-CCCcceeeeEEEEccCCchhhhhhhccccCCCcCcchhHHHHHHHHHHHHH
Q 001489 774 RPTIIFGADVTHPHPGEDSSPSIAA--D-WPEVTKYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISFRRA 850 (1068)
Q Consensus 774 ~~tmiiG~DV~Hp~~g~~~~pSiaa--d-~~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~p~~~~~~~~mi~~~L~~f~~~ 850 (1068)
.|..|-++|+||-... ....|++. | -+.-..|. ...+... +-.+|. .||+|.|...+++
T Consensus 360 ~p~rIE~fDiSh~~G~-~~V~smVvf~~G~~~k~~YR-~f~i~~~--~~~dD~--------------~~m~Evl~RR~~r 421 (567)
T PRK14667 360 LPERIEGFDISHFYGE-FTVGSCVVWEDGSMNKKEYR-RYKIKTV--DGIDDY--------------ASLREVLTRRARR 421 (567)
T ss_pred CCCeEEEEECcccCCC-cceEEEEEEECCccChhhCC-eeecCCC--CCCCHH--------------HHHHHHHHHHhhh
Confidence 4678999999996543 23334433 2 01111221 1222211 113555 4667777555543
Q ss_pred c----CCCCceEEEEecCCChhHHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEEeecccccccc
Q 001489 851 T----GQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFA 911 (1068)
Q Consensus 851 ~----~~~P~~IIiYRDGVSEgQ~~~Vl~~El~~I~~a~~~~~~~y~P~it~Ivv~KrhhtRff~ 911 (1068)
. ..+|+-||| || +.||+..+ .+++.++.- .|.+|-..|+. .++|.
T Consensus 422 ~~~~~~~~PDLili--DG-GkgQl~aa--------~~~l~~lg~----~i~v~glaK~~-e~i~~ 470 (567)
T PRK14667 422 YKEGENPMPDLWLI--DG-GKGQLSVG--------IEVRDRLGL----NIKVFSLAKKE-EILYT 470 (567)
T ss_pred ccccCCCCCCEEEE--eC-CHHHHHHH--------HHHHHHcCC----CCcEEEEEecC-cEEEc
Confidence 2 248998888 77 56776544 456666632 46788888865 44553
No 41
>PF05642 Sporozoite_P67: Sporozoite P67 surface antigen; InterPro: IPR008845 This family consists of several Theileria P67 surface antigens. A stage specific surface antigen of Theileria parva, p67, is the basis for the development of an anti-sporozoite vaccine for the control of East Coast fever (ECF) in Bos taurus. The antigen has been shown to contain five distinct linear peptide sequences recognised by sporozoite-neutralising murine monoclonal antibodies [].
Probab=30.08 E-value=1.1e+03 Score=28.94 Aligned_cols=13 Identities=15% Similarity=0.158 Sum_probs=7.1
Q ss_pred hHHHHHHHHHHHH
Q 001489 638 DSIARGFCFELAQ 650 (1068)
Q Consensus 638 ~~~~~~f~~~L~~ 650 (1068)
++++...+++|++
T Consensus 590 eeev~kilde~vk 602 (727)
T PF05642_consen 590 EEEVKKILDELVK 602 (727)
T ss_pred HHHHHHHHHHHhc
Confidence 4555555555554
No 42
>KOG3875 consensus Peroxisomal biogenesis protein peroxin [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.68 E-value=1.8e+02 Score=32.68 Aligned_cols=17 Identities=24% Similarity=0.458 Sum_probs=11.5
Q ss_pred CCccccccceEeccCcc
Q 001489 510 RPNYLPMEVCKIVEGQR 526 (1068)
Q Consensus 510 ~~~ylP~Elc~i~~gQ~ 526 (1068)
..-|+|.-.|.|+.-|.
T Consensus 318 ~tG~iP~NYvkIi~rq~ 334 (362)
T KOG3875|consen 318 TTGLIPINYVKIIGRQP 334 (362)
T ss_pred eeeeeehhhhhhhhcCC
Confidence 34578888888875443
No 43
>PLN03138 Protein TOC75; Provisional
Probab=29.67 E-value=39 Score=43.07 Aligned_cols=20 Identities=15% Similarity=0.257 Sum_probs=12.1
Q ss_pred CCccccccceE-eccCccccc
Q 001489 510 RPNYLPMEVCK-IVEGQRYSK 529 (1068)
Q Consensus 510 ~~~ylP~Elc~-i~~gQ~~~~ 529 (1068)
++.++=-|+-. +.||+.+..
T Consensus 364 rD~VIRREL~~~lkeGd~fN~ 384 (796)
T PLN03138 364 QLPIIDRELPKQLRQGHIFNI 384 (796)
T ss_pred cCeEEeeecccccCCCcccCH
Confidence 45555556653 667877753
No 44
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=29.58 E-value=1.9e+02 Score=36.40 Aligned_cols=11 Identities=36% Similarity=0.386 Sum_probs=5.8
Q ss_pred HHHHHHHHHHc
Q 001489 338 EALQVLDIVLR 348 (1068)
Q Consensus 338 ~~iq~Lniilr 348 (1068)
.+.|-|.|++.
T Consensus 699 KtaQnLsIflg 709 (1102)
T KOG1924|consen 699 KTAQNLSIFLG 709 (1102)
T ss_pred HHHHHHHHHHh
Confidence 34555555554
No 45
>PRK14670 uvrC excinuclease ABC subunit C; Provisional
Probab=28.90 E-value=3.8e+02 Score=33.41 Aligned_cols=107 Identities=22% Similarity=0.301 Sum_probs=56.7
Q ss_pred CCeEEEEEEecCCCCCCCCCCeeEe--c-CCCcceeeeEEEEccCCchhhhhhhccccCCCcCcchhHHHHHHHHHHHHH
Q 001489 774 RPTIIFGADVTHPHPGEDSSPSIAA--D-WPEVTKYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISFRRA 850 (1068)
Q Consensus 774 ~~tmiiG~DV~Hp~~g~~~~pSiaa--d-~~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~p~~~~~~~~mi~~~L~~f~~~ 850 (1068)
.|..|-++|+||-... ....|++. | -+.-..|. ...+.......++|. .+|+|.|...++.
T Consensus 357 ~p~rIE~fDiSh~~G~-~~V~smVvf~~G~~~k~~YR-kf~ik~~~~~~~DD~--------------a~M~Evl~RR~~r 420 (574)
T PRK14670 357 LPKTIEGFDIAHLNGQ-KTVASLVTFKMGKPFKDGYR-VYKINSLLKGEIDDF--------------KAIKEVISRRYSK 420 (574)
T ss_pred CCCeEEEEECCccCCC-CceEEEEEEECCccChhhCC-eeeccCCCCCCCCHH--------------HHHHHHHHHHHhh
Confidence 4678999999997643 22334333 2 01111121 122221000013454 4566666555443
Q ss_pred --c--CCCCceEEEEecCCChhHHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEEeeccccccc
Q 001489 851 --T--GQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLF 910 (1068)
Q Consensus 851 --~--~~~P~~IIiYRDGVSEgQ~~~Vl~~El~~I~~a~~~~~~~y~P~it~Ivv~KrhhtRff 910 (1068)
. ..+|+-||| || +.||+..+ ++++.++. ....|.+|-..|+.-+ +|
T Consensus 421 ~~~~~~~~PDLilI--DG-GkgQl~aa--------~~vl~~lg--~~~~i~v~gLaK~~e~-i~ 470 (574)
T PRK14670 421 LINEQLELPNLILI--DG-GKGQLNAA--------YSILKGLK--IENKVKVCALAKKEET-IF 470 (574)
T ss_pred cccccCCCCCEEEE--eC-CHHHHHHH--------HHHHHHcC--CCCCceEEEEecCCeE-EE
Confidence 1 248998888 77 56777544 45666663 2224778888886633 44
No 46
>PF04094 DUF390: Protein of unknown function (DUF390); InterPro: IPR007228 This domain is found in a family of long proteins that are currently found only in rice. They have no known function. However they may be some kind of transposable element. There is a putative gypsy type transposon domain (IPR007321 from INTERPRO) towards the N terminus of the proteins.
Probab=28.67 E-value=2.5e+02 Score=35.09 Aligned_cols=10 Identities=20% Similarity=0.544 Sum_probs=5.4
Q ss_pred CCCCCEEEEE
Q 001489 891 NYQPPVTFVV 900 (1068)
Q Consensus 891 ~y~P~it~Iv 900 (1068)
+--|.|+|-.
T Consensus 795 g~apr~~~~~ 804 (828)
T PF04094_consen 795 GSAPRLAFAL 804 (828)
T ss_pred CcCccccccC
Confidence 3456666543
No 47
>cd01457 vWA_ORF176_type VWA ORF176 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most
Probab=27.39 E-value=2.8e+02 Score=29.05 Aligned_cols=69 Identities=16% Similarity=0.323 Sum_probs=43.7
Q ss_pred CCcCcchhHHHHHHHHHHHHH---cCCCC--ceEEEEecCCChhHHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEEee
Q 001489 830 PVRGAVSGGMIKELLISFRRA---TGQKP--QRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQK 903 (1068)
Q Consensus 830 p~~~~~~~~mi~~~L~~f~~~---~~~~P--~~IIiYRDGVSEgQ~~~Vl~~El~~I~~a~~~~~~~y~P~it~Ivv~K 903 (1068)
|..++.+...+..+++.|... +...| ..|||.=||.....- . -...|.+|.+++.....-.|.||.|..
T Consensus 78 p~G~T~l~~~l~~a~~~~~~~~~~~~~~p~~~~vIiiTDG~~~d~~-~----~~~~i~~a~~~l~~~~~i~i~~v~vG~ 151 (199)
T cd01457 78 PDGGTNLAAVLQDALNNYFQRKENGATCPEGETFLVITDGAPDDKD-A----VERVIIKASDELDADNELAISFLQIGR 151 (199)
T ss_pred CCCcCcHHHHHHHHHHHHHHHHhhccCCCCceEEEEEcCCCCCcHH-H----HHHHHHHHHHhhccccCceEEEEEeCC
Confidence 445567788888888777653 12344 889999999875421 1 124566777766544345677777654
No 48
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=26.79 E-value=5.4e+02 Score=31.46 Aligned_cols=58 Identities=21% Similarity=0.206 Sum_probs=34.7
Q ss_pred CCceEEEEE--eeCCCCchhhh-hhhhhhcccCceeeeeeccccccccHHHHHHHHHHHHhhcC
Q 001489 694 KELDLLIVI--LPDNNGSLYGD-LKRICETDLGLVSQCCLTKHVFKMSKQYMANVALKINVKVG 754 (1068)
Q Consensus 694 ~~~~lvlvi--lp~~~~~~Y~~-IK~~~d~~~GI~TQcv~~~~~~k~~~q~~~Ni~lKiN~KlG 754 (1068)
...+..||. -|..+.+.|.+ .|++ .+.|+.+-|| .+++--..+.-+..++-.|-..++
T Consensus 138 ~~~~~~i~yt~sp~~t~e~~~~~a~~l--~~~Gad~I~I-kDtaGll~P~~~~~LV~~Lk~~~~ 198 (499)
T PRK12330 138 KHAQGTICYTVSPIHTVEGFVEQAKRL--LDMGADSICI-KDMAALLKPQPAYDIVKGIKEACG 198 (499)
T ss_pred CeEEEEEEEecCCCCCHHHHHHHHHHH--HHcCCCEEEe-CCCccCCCHHHHHHHHHHHHHhCC
Confidence 445556655 44433344444 3433 4579888777 455555667777788777766654
No 49
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=24.37 E-value=25 Score=38.55 Aligned_cols=120 Identities=18% Similarity=0.333 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 001489 12 TGGESSESQETSAGGGRGSQRPSERSAPPSQGGGGGGTGYQGSGRGWGPPSQQGGRGGYGGGRGRGGPQQQHYGGTSEYQ 91 (1068)
Q Consensus 12 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~gg~~~~g~g~g~~~~g~~gg~gg~~g~~g~gg~~~~~~gg~~~~~ 91 (1068)
+++++++++..+...+.++..++.+..+..+-+|+.++.....+++.++-..-..++.+.++-++.|+-.+-.+.+....
T Consensus 240 n~G~gGggpDnGpqd~dn~dd~g~~d~~N~~dng~~g~dntddng~qgpDntddng~q~~d~~~dNGphdplp~np~Ds~ 319 (381)
T PF05297_consen 240 NGGAGGGGPDNGPQDPDNTDDNGPQDPGNTDDNGPQGPDNTDDNGPQGPDNTDDNGPQGPDNDDDNGPHDPLPHNPCDSA 319 (381)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCcccc
Q ss_pred CCCCCCCC------CCCCCCCCCCCCCCCCC---------CCCCCCCCCCCCCCC
Q 001489 92 GRGRGGPP------QPGGRGGYGGGRGGVGM---------GSGGRGGHSGGPTRS 131 (1068)
Q Consensus 92 g~g~g~~~------~~gg~g~~~gg~~g~g~---------~~~g~g~~~~~~~~~ 131 (1068)
|+.+|-+. +-||-++++.+..|+|+ +..|.||...++..+
T Consensus 320 GndggPp~Lt~~ve~~gGd~g~~~~~dGGgGdphlP~~i~~tsg~~g~~~~~~~~ 374 (381)
T PF05297_consen 320 GNDGGPPKLTEEVENKGGDGGPPPMTDGGGGDPHLPTPIQATSGSGGDDGDPHGP 374 (381)
T ss_dssp -------------------------------------------------------
T ss_pred CCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCccceeccCCCCCCCCCCCCc
No 50
>KOG3123 consensus Diphthine synthase [Translation, ribosomal structure and biogenesis]
Probab=23.18 E-value=95 Score=32.84 Aligned_cols=48 Identities=25% Similarity=0.402 Sum_probs=32.8
Q ss_pred CCceEEEEEeeCCCCchhhhhhhhhhcccCceeeeeeccccccccHHHHHHHH
Q 001489 694 KELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYMANVA 746 (1068)
Q Consensus 694 ~~~~lvlvilp~~~~~~Y~~IK~~~d~~~GI~TQcv~~~~~~k~~~q~~~Ni~ 746 (1068)
.-+.++++--..+..+.|+.||+ ..+.|++|-|++.=++ +.|.+.|++
T Consensus 130 etVSiv~ftd~wrP~SfydkI~~--Nr~~glHTLcLLDIkv---kEqs~enl~ 177 (272)
T KOG3123|consen 130 ETVSIVFFTDNWRPESFYDKIKE--NRQLGLHTLCLLDIKV---KEQSVENLA 177 (272)
T ss_pred cEEEEEEEccCcCchhHHHHHHH--hhhcCceeEEEEEEee---ccHHHHHHh
Confidence 44566666555566788999996 6889999999986433 334444443
No 51
>PRK14671 uvrC excinuclease ABC subunit C; Provisional
Probab=23.06 E-value=4.1e+02 Score=33.48 Aligned_cols=105 Identities=23% Similarity=0.278 Sum_probs=56.9
Q ss_pred CCeEEEEEEecCCCCCCCCCCeeEe--c-CCCcceeeeEEEEccCCchhhhhhhccccCCCcCcchhHHHHHHHHHHHHH
Q 001489 774 RPTIIFGADVTHPHPGEDSSPSIAA--D-WPEVTKYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISFRRA 850 (1068)
Q Consensus 774 ~~tmiiG~DV~Hp~~g~~~~pSiaa--d-~~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~p~~~~~~~~mi~~~L~~f~~~ 850 (1068)
.|..|-++|+||-... ....|++. | -+.-..|. ...+... +-.+|. .+|+|.|...+++
T Consensus 414 ~p~rIE~fDiSh~~G~-~~V~smVvf~~G~~~k~~YR-~f~ik~~--~~~dDy--------------~~m~Evl~RR~~r 475 (621)
T PRK14671 414 LPRRIECFDNSHFQGT-DYVSSMVCFVDGKPKKSDYR-KFKLRSF--EGSDDY--------------AAMREVVTRRYSG 475 (621)
T ss_pred CCCEEEEEECCccCCC-CceEEEEEEECCccChhhCC-eeecCCC--CCCCHH--------------HHHHHHHHHHhhc
Confidence 4678999999997643 22334333 2 01112222 1222210 113454 4666766555443
Q ss_pred c----CCCCceEEEEecCCChhHHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEEeeccccccccc
Q 001489 851 T----GQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFAN 912 (1068)
Q Consensus 851 ~----~~~P~~IIiYRDGVSEgQ~~~Vl~~El~~I~~a~~~~~~~y~P~it~Ivv~KrhhtRff~~ 912 (1068)
- ..+|+-||| || +.||+..+ .+++.++.- .|.+|-..||. .++|..
T Consensus 476 ~~~~~~~~PDLilI--DG-GkgQl~aa--------~~vl~~lg~----~i~viglaK~~-e~i~~~ 525 (621)
T PRK14671 476 SLAEELPLPDLIVI--DG-GKGQVNSA--------WKVLQELGL----SVPVIGLAKRL-EEIFTP 525 (621)
T ss_pred cccccCCCCCEEEE--eC-CHHHHHHH--------HHHHHHcCC----CCcEEEEEecc-cEEEeC
Confidence 1 258998888 77 56777544 456666632 47788888844 555543
No 52
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=22.62 E-value=88 Score=23.00 Aligned_cols=20 Identities=15% Similarity=0.326 Sum_probs=16.4
Q ss_pred HHHHHHHHHHcCCCCceEEE
Q 001489 841 KELLISFRRATGQKPQRIIF 860 (1068)
Q Consensus 841 ~~~L~~f~~~~~~~P~~IIi 860 (1068)
..++.+|+..|+++|..|-|
T Consensus 14 a~rv~~f~~~ngRlPnyV~i 33 (33)
T PF09373_consen 14 ASRVNNFYESNGRLPNYVSI 33 (33)
T ss_pred HHHHHHHHHHcCCCCCeeeC
Confidence 35788999999999998743
No 53
>PLN03138 Protein TOC75; Provisional
Probab=22.07 E-value=65 Score=41.13 Aligned_cols=12 Identities=17% Similarity=0.180 Sum_probs=7.9
Q ss_pred cCCCcceeeeEE
Q 001489 799 DWPEVTKYAGLV 810 (1068)
Q Consensus 799 d~~~~~~y~~~~ 810 (1068)
+|..++++.+++
T Consensus 642 ~~~~fNR~~~~~ 653 (796)
T PLN03138 642 KFPFFNRHQLTV 653 (796)
T ss_pred CCCceEEEEEEE
Confidence 566667776665
No 54
>PRK14666 uvrC excinuclease ABC subunit C; Provisional
Probab=21.77 E-value=4.7e+02 Score=33.19 Aligned_cols=98 Identities=19% Similarity=0.212 Sum_probs=52.5
Q ss_pred CCeEEEEEEecCCCCCCCCCCeeEe--c-CCCcceeeeEEEEccCCchhhhhhhccccCCCcCcchhHHHHHHHHHHHHH
Q 001489 774 RPTIIFGADVTHPHPGEDSSPSIAA--D-WPEVTKYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISFRRA 850 (1068)
Q Consensus 774 ~~tmiiG~DV~Hp~~g~~~~pSiaa--d-~~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~p~~~~~~~~mi~~~L~~f~~~ 850 (1068)
.|..|-++|+||-... ....|++. | -+.-..|. .+.+... + .+|. .+|.|.|...+++
T Consensus 471 ~p~rIE~~DiSh~~G~-~~v~~mVvf~~G~p~k~~YR-~f~i~~~--~-~dD~--------------~~m~ev~~RR~~~ 531 (694)
T PRK14666 471 PPHRIEAVDVSHTGGR-NTRVGMVVFEDGKPARDAYR-TYAFEDG--E-GDDY--------------GTLAAWAGRRVES 531 (694)
T ss_pred CCCEEEEEECcccCCc-CceEEEEEEECCccChhhCC-eeeCCCC--C-CChH--------------HHHHHHHHHHhcC
Confidence 4678999999997643 22334333 2 01111221 1112111 1 2454 4566666555443
Q ss_pred cCCCCceEEEEecCCChhHHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEEee
Q 001489 851 TGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQK 903 (1068)
Q Consensus 851 ~~~~P~~IIiYRDGVSEgQ~~~Vl~~El~~I~~a~~~~~~~y~P~it~Ivv~K 903 (1068)
...+|+-||| || +.||+..+ .+++.++.- ...|.+|-..|
T Consensus 532 ~~~~PDLili--DG-G~gQl~aa--------~~~l~e~g~--~~~~~v~~laK 571 (694)
T PRK14666 532 GPPWPDLLLV--DG-GRGQLAAV--------VRALEEAGM--GGLFAVASIAK 571 (694)
T ss_pred CCCCCCEEEE--cC-CHHHHHHH--------HHHHHHcCC--CCCccEEEEec
Confidence 3358988887 77 56777644 456666642 22367777777
No 55
>PF07555 NAGidase: beta-N-acetylglucosaminidase ; InterPro: IPR011496 This family consists of both eukaryotic and prokaryotic hyaluronidases. Human Q9HAR0 from SWISSPROT is expressed during meningioma []. Clostridium perfringens, P26831 from SWISSPROT, is involved in pathogenesis and is likely to act on connectivity tissue during gas gangrene []. It catalyses the random hydrolysis of 1->4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate.; PDB: 2WB5_B 2V5C_B 2VUR_A 2V5D_A 2YDS_A 2CBI_A 2XPK_A 2CBJ_B 2J62_A 2X0Y_A ....
Probab=21.45 E-value=8e+02 Score=27.99 Aligned_cols=105 Identities=21% Similarity=0.177 Sum_probs=58.4
Q ss_pred HHHHHHHHhcCccc---CC--CCcccCCCCC--hhhHHHHHHHHHHHHHhhccCCCCceEEEEEeeCCCC-----chhhh
Q 001489 646 FELAQMCYISGMAF---NP--EPVIPPISAR--PEHVEKVLKTRYHDAMTKLGQGKELDLLIVILPDNNG-----SLYGD 713 (1068)
Q Consensus 646 ~~L~~~~~~~Gm~i---~~--~p~~~~~~~~--~~~~~~~l~~~~~~a~~~~~~~~~~~lvlvilp~~~~-----~~Y~~ 713 (1068)
..|++++..+||+. .+ +|.....+.. |++-...|+++.+.+.+ .++.|++.|-|..+- ..+..
T Consensus 18 ~~l~~f~~~~kmN~YiYAPKdDpyhr~~Wre~Yp~~el~~l~~L~~~a~~-----~~V~Fv~aisPg~~~~~s~~~d~~~ 92 (306)
T PF07555_consen 18 LDLIRFLGRYKMNTYIYAPKDDPYHRSKWREPYPEEELAELKELADAAKA-----NGVDFVYAISPGLDICYSSEEDFEA 92 (306)
T ss_dssp HHHHHHHHHTT--EEEE--TT-TTTTTTTTS---HHHHHHHHHHHHHHHH-----TT-EEEEEEBGTTT--TSHHHHHHH
T ss_pred HHHHHHHHHcCCceEEECCCCChHHHhhhcccCCHHHHHHHHHHHHHHHH-----cCCEEEEEECcccccccCcHHHHHH
Confidence 45677888888875 11 2433322211 44445667777766544 579999999998653 23455
Q ss_pred hhhhhh--cccCceeeeeeccccc-----------cccHHHHHHHHHHHHhhcCC
Q 001489 714 LKRICE--TDLGLVSQCCLTKHVF-----------KMSKQYMANVALKINVKVGG 755 (1068)
Q Consensus 714 IK~~~d--~~~GI~TQcv~~~~~~-----------k~~~q~~~Ni~lKiN~KlGG 755 (1068)
||...+ .++||-.=+|+.+-+. +...+--..|+..|+..|.-
T Consensus 93 L~~K~~ql~~lGvr~FailfDDi~~~~~~~~~~~~~~~~~~q~~l~n~v~~~l~~ 147 (306)
T PF07555_consen 93 LKAKFDQLYDLGVRSFAILFDDIDGDLWHCDKDDFNSLAQAQARLLNRVNKELIK 147 (306)
T ss_dssp HHHHHHHHHCTT--EEEEE-TS-SSC--TTTTTT-SCHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhcCCCEEEEeecCCCCccccccccccchHHHHHHHHHHHHHHHHhc
Confidence 555444 3579988888877665 22234445778888777653
No 56
>PRK00558 uvrC excinuclease ABC subunit C; Validated
Probab=21.08 E-value=5.7e+02 Score=32.10 Aligned_cols=98 Identities=21% Similarity=0.279 Sum_probs=52.3
Q ss_pred CCeEEEEEEecCCCCCCCCCCeeEe--c-CCCcceeeeEEEEccCCchhhhhhhccccCCCcCcchhHHHHHHHHHHHHH
Q 001489 774 RPTIIFGADVTHPHPGEDSSPSIAA--D-WPEVTKYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISFRRA 850 (1068)
Q Consensus 774 ~~tmiiG~DV~Hp~~g~~~~pSiaa--d-~~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~p~~~~~~~~mi~~~L~~f~~~ 850 (1068)
.|..|-++|+||-... ....|++. | -+.-..|. ...+... +-.+|. .+|+|.|...++.
T Consensus 382 ~p~rIE~fDiSh~~G~-~~V~smVvf~~G~~~k~~YR-~f~i~~~--~~~dDy--------------a~m~Evl~RR~~~ 443 (598)
T PRK00558 382 PPYRIECFDISHIQGT-ATVASMVVFEDGGPDKSEYR-RYNIKGV--TGGDDY--------------AAMREVLTRRYSR 443 (598)
T ss_pred CCCEEEEEECCccCCC-cceEEEEEEECCccChhhCC-eeecCCC--CCCCHH--------------HHHHHHHHHHhhc
Confidence 4678999999996542 22334333 2 01111222 1222211 113454 4566666554443
Q ss_pred ----cCCCCceEEEEecCCChhHHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEEeec
Q 001489 851 ----TGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKR 904 (1068)
Q Consensus 851 ----~~~~P~~IIiYRDGVSEgQ~~~Vl~~El~~I~~a~~~~~~~y~P~it~Ivv~Kr 904 (1068)
...+|+-||| || +.||+..+ .++++++.- .|.+|-..|.
T Consensus 444 ~~~~~~~~PDLili--DG-GkgQl~~a--------~~~l~~lg~----~i~v~glaK~ 486 (598)
T PRK00558 444 LLKEFGPLPDLILI--DG-GKGQLNAA--------KEVLEELGL----DIPVVGLAKG 486 (598)
T ss_pred cccccCCCCCEEEE--eC-CHHHHHHH--------HHHHHHCCC----CCcEEEEEec
Confidence 2358998888 77 56777654 456666632 3667766663
No 57
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=20.23 E-value=2.9e+02 Score=33.10 Aligned_cols=73 Identities=21% Similarity=0.321 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 001489 21 ETSAGGGRGSQRPSERSAPPSQGGGGGGTGYQGSGRGWGPPSQQGGRGGYGGGRGRGGPQQQHYGGTSEYQGRG 94 (1068)
Q Consensus 21 ~~~~~~~~g~~~~~~~~~~~~~~~g~gg~~~~g~g~g~~~~g~~gg~gg~~g~~g~gg~~~~~~gg~~~~~g~g 94 (1068)
..+++.+.+++.+.++....+-+.+.|++..+..++|.+++++++...|. ...++++++++++.+..+|.+..
T Consensus 356 ~~~ga~g~~~~s~~~g~~~~~~~~~~Gg~a~g~~~gG~~g~~~~~~~~G~-~~~~~~~~~~~Gy~g~~~~~~~~ 428 (510)
T KOG4211|consen 356 GAPGASGGGGPSGPGGVGSSGDRNGGGGYASGSYGGGGNGGGGRGSPYGR-PSDGYSSPGGGGYSGPRGYGRGP 428 (510)
T ss_pred CCcccccCccCCCCCCccccccccCCCCccccccccCCCCCccccCCCCC-CcccccCCCCCCCcCcccCCCCc
Done!