Query 001489
Match_columns 1068
No_of_seqs 433 out of 1420
Neff 7.5
Searched_HMMs 29240
Date Tue Mar 26 17:13:58 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001489.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_788-792//hhsearch_pdb/001489hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f3t_A Protein argonaute-2; hy 1.0 1 1 1595.7 75.7 828 193-1068 19-861 (861)
2 4f1n_A Kpago; argonaute, RNAI, 1.0 1 1 1479.7 55.3 832 192-1068 10-1046(1046)
3 2yhb_A QDE-2, post-transcripti 1.0 1 1 851.4 20.7 408 613-1068 2-437 (437)
4 1yvu_A Hypothetical protein AQ 1.0 1 1 851.4 35.7 653 217-1016 6-696 (706)
5 1u04_A Argonaute, hypothetical 1.0 1 1 760.1 38.1 657 212-1016 2-759 (771)
6 3ho1_A Argonaute; argonaute, p 1.0 1 1 698.2 47.3 639 212-1011 5-669 (685)
7 2yha_A Post-transcriptional ge 1.0 1 1 695.8 22.7 360 613-1068 2-388 (388)
8 2w42_A PIWI, putative uncharac 1.0 1 1 467.2 11.5 360 587-1015 5-407 (427)
9 4g0x_A Protein argonaute 1; MI 1.0 1 1 227.0 15.2 146 615-760 2-147 (147)
10 1vyn_A Argonaute2; nucleic aci 1.0 1 1 222.6 10.0 138 406-546 2-143 (143)
No 1
>4f3t_A Protein argonaute-2; hydrolase/gene regulation, RNAI, slicer, hydrolase-RNA; 2.25A {Homo sapiens} PDB: 4ei1_A 4ei3_A* 1r4k_A 1si2_A 1si3_A
Probab=1.00 E-value=1 Score=1595.70 Aligned_cols=828 Identities=44% Similarity=0.766 Sum_probs=721.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEC
Q ss_conf 99987756878999999998336972247856499852665789727765301219999999999974014983215616
Q 001489 193 PPSSKSVRFPLRPGRGSTGTRCIVKANHFFAELPDKDLHQYDVTITPEVTSRGVNRAVMEQLVKLYRESHLGKRLPAYDG 272 (1068)
Q Consensus 193 p~~~~~~~~p~RP~~Gt~G~~v~l~tN~f~i~~~~~~iy~YdV~I~pe~~~k~~~r~i~~~l~~~~~~~~~~~~~~vyDG 272 (1068)
|.+.+...+|+||++||.|++|.|+||||++++++..+|||||+|.|+..+++++|+++++++++++...|++..+||||
T Consensus 19 ~~~~~~~~~p~RPg~Gt~G~~i~l~aN~F~v~~~~~~ly~Y~V~i~p~~~~~~~~r~i~~~l~~~~~~~~~~~~~~afDG 98 (861)
T 4f3t_A 19 PIQGYAFKPPPRPDFGTSGRTIKLQANFFEMDIPKIDIYHYELDIKPEKCPRRVNREIVEHMVQHFKTQIFGDRKPVFDG 98 (861)
T ss_dssp ------CCCCBCCCCCCCSEEEEEEESEEEEECCSCEEEEEEEEEESCSCCHHHHHHHHHHHHHHSCCCCCTTCCCEECS
T ss_pred CCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECC
T ss_conf 54454566798997898884789995569987788862650378478767677999999999987556650686078758
Q ss_pred CCEEEECCCCCCCCCEEEEEEECCCCCCCCCCCCCEEEEEEEEEEEECHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 74278417789996308999705999999988785899999993540746489875168999937899999999806998
Q 001489 273 RKSLYTAGPLPFLSKEFRITLLDDDDGQGGQRREREFKVVIKLAARADLHHLGLFLQGRQADAPQEALQVLDIVLRELPT 352 (1068)
Q Consensus 273 ~~~lys~~~Lp~~~~~~~v~~~~~~~~~~~~~~~~~~~v~i~~~~~~~l~~l~~~l~~~~~~~~~~~lq~Lniilr~~~~ 352 (1068)
+++|||+.+||+++..+++.+..+++ .+++.|+|+|++++++++.+|.+||.+.....+.++||+||||||+.++
T Consensus 99 ~~~l~s~~~L~~~~~~~~~~v~~~~~-----~~~~~~~V~I~~~~~i~l~~L~~~l~g~~~~~~~~~iq~Lniilr~~~~ 173 (861)
T 4f3t_A 99 RKNLYTAMPLPIGRDKVELEVTLPGE-----GKDRIFKVSIKWVSCVSLQALHDALSGRLPSVPFETIQALDVVMRHLPS 173 (861)
T ss_dssp SSEEEESSCCSCSSCEEEEECCC------------CEEEEEEEEEEEEHHHHHHHHHTCSSSCCHHHHHHHHHHHHHHHH
T ss_pred CCEEEECCCCCCCCCCEEEEEECCCC-----CCCCEEEEEEEEEEECCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 63178887678778636999863788-----9872799999990243889999996499878828999999999976221
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEEEEECEEEECCCCCEEEEEEECCEEEEECCCCHHHHHHHHHCCCCC---CCCCC
Q ss_conf 873465754359999986458997599720011100247805875405412464476199999998428999---99999
Q 001489 353 TRYCPVGRSFYSPDLGRRQPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVQQLLNRDVS---SRPLS 429 (1068)
Q Consensus 353 ~~~~~~Gr~ff~~~~~~~~~lg~Gle~~~G~~~Svr~~~~~l~LniD~s~~~F~~~~~l~d~i~~~~~~~~~---~~~~~ 429 (1068)
+++..+||+||++..+...++++|+|+|+||++|||+++++|+||+|+++++|+++++|+|+|.++++..+. .+.++
T Consensus 174 ~~~~~vGR~Ff~~~~~~~~~lg~Gle~w~G~~~Svr~~~~~l~LnvDvs~~~F~~~~~v~d~~~~~~~~~~~~~~~~~~~ 253 (861)
T 4f3t_A 174 MRYTPVGRSFFTASEGCSNPLGGGREVWFGFHQSVRPSLWKMMLNIDVSATAFYKAQPVIEFVCEVLDFKSIEEQQKPLT 253 (861)
T ss_dssp HHSEEETTEEECCC---CCEEETTEEEEEEEEEEEEECSSSEEEEEEEEEEEEECCEEHHHHHHHHHTCSSCC---CCCC
T ss_pred CCCCCCCCCCCCCCCCCEECCCCCEEEEECEEEEEEECCCCCEEEECCCCEEEEECCCHHHHHHHHHCCCCHHHHCCCCC
T ss_conf 24642687755898775011689879984506789851785278541431027607709999999863455022035657
Q ss_pred HHHHHHHHHHHCCCEEEEEECCCCCCEEEEECCCCCCCCCEEEEEC-CCC--CEEEHHHHHHHHCCCCCCCCCCCEEEEC
Q ss_conf 6789999998159599993259877339994357899875055416-999--1762999999881976578998469924
Q 001489 430 DADRVKIKKALRGVRVEVTHRGNMRRKYRISGLTSQTTGELTFPVD-ESG--TLKSVVEYFYETYGFVIQHTQWPCLQVG 506 (1068)
Q Consensus 430 ~~~~~~i~~~Lkgl~V~~~~~~~~~r~~~I~~i~~~~a~~~~F~~~-~~g--~~isV~eYf~~kY~i~L~~p~lP~v~~g 506 (1068)
+.++.+++++|+|++|.++|.+..+|+|+|.+|++.++.+.+|.++ ++| ++|||+|||+++|||+|+||+||||++|
T Consensus 254 ~~~~~~~~k~LkGl~V~~t~~~~~~r~yrI~~i~~~pa~~~~F~~~~~~g~~~~iSV~dYFk~kYni~L~~p~lPll~~g 333 (861)
T 4f3t_A 254 DSQRVKFTKEIKGLKVEITHCGQMKRKYRVCNVTRRPASHQTFPLQQESGQTVECTVAQYFKDRHKLVLRYPHLPCLQVG 333 (861)
T ss_dssp HHHHHHHHHHHTTCEEEESCC---CCEEEEEEEEEEETTTCEEEEECSSSCEEEEEHHHHHHHHHCCCCSCTTSEEEEES
T ss_pred HHHHHHHHHHHCCCEEEEEECCCCCCEEEEEECCCCCCCCCEEEEECCCCCCEEEEHHHHHHHHCCCCCCCCCCCEEEEC
T ss_conf 78999999985793899830377886599953788998776787652789841688899998753952479997638834
Q ss_pred CCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCEEEEEE
Q ss_conf 58877411454358406853345699999999999841994677999999998325999822232263872652287638
Q 001489 507 NQQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPHERERDIMQTVHHNAYHEDPYAREFGIKISEKLASVEAR 586 (1068)
Q Consensus 507 ~~~~~~ylP~Elc~i~~gQ~~~~kl~~~q~~~mik~~~~~P~~R~~~I~~~~~~~~~~~~~~l~~fGi~i~~~~~~v~gr 586 (1068)
++++++|||||||.|+|||++.++|+++|+++||++++..|.+|.+.|.++++.+.++.+++|++|||+|+++|++|+||
T Consensus 334 ~~~~~~ylP~Elc~i~~gQ~~~~~Lt~~q~s~mik~~~~~P~~R~~~I~~~~~~l~~~~~~~l~~fGi~i~~~~~~v~gR 413 (861)
T 4f3t_A 334 QEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIRATARSAPDRQEEISKLMRSASFNTDPYVREFGIMVKDEMTDVTGR 413 (861)
T ss_dssp CTTTTEEEEGGGEEECTTCBCCSCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCGGGCHHHHHTTCEECSSCEEEEEE
T ss_pred CCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCEEECCEEEEEEE
T ss_conf 88887525656689407844556689899999999875497999999999998716897568997797883875689779
Q ss_pred ECCCCCEEECCCCCCCCCCCCCCCEECCCCEEEECCEECEEEEEEECC--CCCHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 708994441479984335996750001273353072205159999268--866689999999999998842954589992
Q 001489 587 ILPAPWLKYHDTGKEKDCLPQVGQWNMMNKKMVNGGTVNHWICINFSR--HVQDSIARGFCFELAQMCYISGMAFNPEPV 664 (1068)
Q Consensus 587 vL~~P~i~y~~~~~~~~~~p~~g~Wn~~~~kf~~~~~i~~W~vv~~~~--~~~~~~~~~f~~~l~~~~~~~Gi~i~~~p~ 664 (1068)
|||||+|.|+++.+. .+.|.+|+|||++++|+++++|++|++++|+. ...++.++.|++.|.+.|+.+||.+...|.
T Consensus 414 vL~~P~I~y~~~~~~-~~~~~~g~W~~~~~~f~~~~~l~~W~vv~~~~~~~~~~~~~~~f~~~L~~~~~~~G~~i~~~p~ 492 (861)
T 4f3t_A 414 VLQPPSILYGGRNKA-IATPVQGVWDMRNKQFHTGIEIKVWAIACFAPQRQCTEVHLKSFTEQLRKISRDAGMPIQGQPC 492 (861)
T ss_dssp ECCCCCEECCSSSCC-EECCBTTBCCCTTCCCTBCCCBCCEEEEECSCTTTSCHHHHHHHHHHHHHHHHHHTCCBCSCCS
T ss_pred EECCCEEEECCCCCC-CCCCCCCCEECCCCEECCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCE
T ss_conf 825864885687643-3378878513569887027544405999845754445899999999999998507865479973
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHH
Q ss_conf 06899990559999999999998650699985199999508998304455565211347201333002202441779999
Q 001489 665 IPPISARPEHVEKVLKTRYHDAMTKLGQGKELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYMAN 744 (1068)
Q Consensus 665 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~lvlvilp~~~~~~Y~~IK~~~d~~~GI~TQci~~~~~~k~~~q~~~N 744 (1068)
+.......+.++..++.+.+. . .++||||||||++ .++|+.||++||+++||+||||+.+++.|.++||+.|
T Consensus 493 ~~~~~~~~~~~~~~~~~l~~~----~---~~~qlvl~Ilp~~-~~~Y~~IK~~~~~~~gI~TQcv~~~~~~k~~~q~~~n 564 (861)
T 4f3t_A 493 FCKYAQGADSVEPMFRHLKNT----Y---AGLQLVVVILPGK-TPVYAEVKRVGDTVLGMATQCVQMKNVQRTTPQTLSN 564 (861)
T ss_dssp EEEECCSSSSHHHHHHHHHHH----S---TTCCEEEEEESSS-CTHHHHHHHHHHHTSCCEEEEEETHHHHSCCHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHH----C---CCCCEEEEEECCC-CCHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHH
T ss_conf 777258457899999999852----6---8983899995898-4289999997430678422899721225556789999
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCEEEE-----CCCCCCEEEEEEEECCCCCHH
Q ss_conf 999998513972210121101477765799919999972189999999982673-----189853056699971687142
Q 001489 745 VALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAA-----DWPEVTKYAGLVCAQAHRQEL 819 (1068)
Q Consensus 745 i~lKiN~KlGG~N~~l~~~~~~~~p~~~~~~tmiiG~DVsHp~~g~~~~pSiaa-----d~~~~~ky~~~~~~Q~~~~E~ 819 (1068)
|+||||+||||+||.+.+. ..|.+...+|||||+||+||+++....||||| | .+.++|.+.+++|.+++|+
T Consensus 565 i~lKiN~KlGG~n~~l~~~---~~~~~~~~~tmiiG~DV~H~~~~~~~~pSiaa~vaS~d-~~~~~y~~~~~~Q~~~~E~ 640 (861)
T 4f3t_A 565 LCLKINVKLGGVNNILLPQ---GRPPVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMD-AHPNRYCATVRVQQHRQEI 640 (861)
T ss_dssp HHHHHHHHTTCBCCEECST---TSCGGGGSCEEEEEEEEECCC----CCCEEEEEEEECS-SSSCCEEEEEEEESTTCCS
T ss_pred HHHHHHHHCCCCCEECCCC---CCCCCCCCCEEEEEEEECCCCCCCCCCCEEEEEEEECC-CCCCEEEEEEEECCCCCCH
T ss_conf 9999988619833044665---46534689658998772146888778865999999847-9856587899975899558
Q ss_pred HHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 03100003688767540579999999999990999944999825779157999999999999999995099999999999
Q 001489 820 IQDLFKTWQDPVRGAVSGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFV 899 (1068)
Q Consensus 820 i~~l~~~~~~~~~~~~~~~~i~~~L~~f~~~~~~~P~~IIiyRDGVSEGQf~~Vl~~Ei~~ik~a~~~~~~~y~P~it~I 899 (1068)
|++| .+|++++|+.|++.++.+|++|||||||||||||.+|+++|+++|++||.+++.+|+|+||||
T Consensus 641 i~~l-------------~~~~~~~L~~~~~~~~~~P~~IiiyRDGVsegq~~~v~~~Ev~~i~~a~~~~~~~~~P~it~I 707 (861)
T 4f3t_A 641 IQDL-------------AAMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFQQVLHHELLAIREACIKLEKDYQPGITFI 707 (861)
T ss_dssp CTTH-------------HHHHHHHHHHHHHHHSCCCSEEEEEEESCCGGGHHHHHHHHHHHHHHHHHHHCTTCCCEEEEE
T ss_pred HHHH-------------HHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEE
T ss_conf 9989-------------999999999999982899845999926877688999999999999999998544779857999
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCEEECCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHH
Q ss_conf 99413333323358999787778888866203115656788573662125676564468637998349988988899999
Q 001489 900 VVQKRHHTRLFANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLT 979 (1068)
Q Consensus 900 vv~KRhhtRff~~~~~~~~~~~~~~N~~pGTVVD~~It~p~~~DFyL~Sh~~~qGTarPthY~VL~De~~~~~d~Lq~LT 979 (1068)
||+||||||||+.+.++ ..++.+|++||||||++||||.+||||||||.++|||+|||||+||+||+++++|+||+||
T Consensus 708 vv~Krh~tRff~~~~~~--~~~~~~N~~pGTvVD~~it~p~~~dFyL~Sh~~~qGTarPthY~Vl~d~~~~~~d~lq~lt 785 (861)
T 4f3t_A 708 VVQKRHHTRLFCTDKNE--RVGKSGNIPAGTTVDTKITHPTEFDFYLCSHAGIQGTSRPSHYHVLWDDNRFSSDELQILT 785 (861)
T ss_dssp EEECCSCCCEEESSGGG--CBTTTTBCCTTEEECSSSSCSSBCEEEEECSCCCSSCCCCEEEEEEEETTCCCHHHHHHHH
T ss_pred EEECCCCCEEEECCCCC--CCCCCCCCCCCEECCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHH
T ss_conf 99725663562258753--3344689898401157502588777999888514136667668998379999999999999
Q ss_pred HHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99530565247774456156879999999653027666899--9865577788898888777667899988778999001
Q 001489 980 NNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDS--GSMTSGTIGRGGMGGGVGARSTRGPGVGAAVRPLPAL 1057 (1068)
Q Consensus 980 ~~LCy~y~r~t~sVSip~P~yYA~l~a~Rar~~~~~~~~d~--~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 1057 (1068)
|+|||+|+|||++||||+||||||++|+|||+|+.+...++ +|+.|+.+. . ....+...++.|
T Consensus 786 y~Lc~~y~~~t~~vsvpaP~yYA~~~a~R~r~~l~~~~~~~~~~~~~~~~~~-------------~--~~~~~~~~~~~v 850 (861)
T 4f3t_A 786 YQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHTSGQSN-------------G--RDHQALAKAVQV 850 (861)
T ss_dssp HHHTTCCTTSSBCCSSCHHHHHHHHHHHHHHHHHCCC-------------------------------CCSTTHHHHTCC
T ss_pred HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC-------------C--CCHHHHHHHHHH
T ss_conf 9986552104788877628899999999999751101356776654468876-------------6--553555445343
Q ss_pred CCCCCCCEEEC
Q ss_conf 11023680419
Q 001489 1058 KENVKRVMFYC 1068 (1068)
Q Consensus 1058 h~~~~~~M~y~ 1068 (1068)
|++++|+||||
T Consensus 851 h~~~~~~M~y~ 861 (861)
T 4f3t_A 851 HQDTLRTMYFA 861 (861)
T ss_dssp CHHHHTTTTTC
T ss_pred HHHHCCCCEEC
T ss_conf 16551583039
No 2
>4f1n_A Kpago; argonaute, RNAI, RNAse H, RNA binding protein-RNA complex; 3.19A {Vanderwaltozyma polyspora}
Probab=1.00 E-value=1 Score=1479.73 Aligned_cols=832 Identities=24% Similarity=0.377 Sum_probs=669.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCC---------------------CEEEEEEEECCCCCC-------
Q ss_conf 9999877568789999999983369722478564998---------------------526657897277653-------
Q 001489 192 APPSSKSVRFPLRPGRGSTGTRCIVKANHFFAELPDK---------------------DLHQYDVTITPEVTS------- 243 (1068)
Q Consensus 192 ~p~~~~~~~~p~RP~~Gt~G~~v~l~tN~f~i~~~~~---------------------~iy~YdV~I~pe~~~------- 243 (1068)
.+.+.....+|.||+|||.|++|.||||||.+.+.+. .||+|+|+|.|+...
T Consensus 10 ~~~~~~~~~~p~Rp~yGt~G~~v~l~aN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~i~~~~~~~~~~~~~~~ 89 (1046)
T 4f1n_A 10 KEDTHAIYKVENRHDYGTKGTKVDILTNHILLAVGNDVPTEKIDKELVPKLDGWWKTAFIFTYHIDFKPQQKGPPRRGKP 89 (1046)
T ss_dssp --CCCCCCCCCBCCCCCCCSEEEEEEESEEEEECCTTSCTTTSCTTTSCCCCSTTTSCEEEEEEEEEC------------
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCC
T ss_conf 87761135478999889899678999637998547775433221112334443335415899889975645665444566
Q ss_pred -------CHHHHHHHHHHHHH--HHHHCCCCCCCEEECCCEEEECCCCC---CCCCEEEEEEE-----CCCCC-------
Q ss_conf -------01219999999999--97401498321561674278417789---99630899970-----59999-------
Q 001489 244 -------RGVNRAVMEQLVKL--YRESHLGKRLPAYDGRKSLYTAGPLP---FLSKEFRITLL-----DDDDG------- 299 (1068)
Q Consensus 244 -------k~~~r~i~~~l~~~--~~~~~~~~~~~vyDG~~~lys~~~Lp---~~~~~~~v~~~-----~~~~~------- 299 (1068)
++.+++|+.+|+++ ... .+... +||||+++|||+.+|| +....+.|.+. +++++
T Consensus 90 ~~~~~~~~~k~~~ii~~ll~e~~~~~-~~~~~-ia~d~~~~L~s~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~ 167 (1046)
T 4f1n_A 90 VPPQELSKPKKYELIEALLDEDEILY-KYRDR-IAFNGEDTIYSHVPLEEFTLFDGCWEVSNKQKKKVVPGMGAPSNKAS 167 (1046)
T ss_dssp -----CCHHHHHHHHHHHHHSCTTTG-GGTTS-EEECSSSEEEESSCGGGSTTCTTCCC---------------------
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCHHH-HCCCC-EEECCCCCEEECCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCC
T ss_conf 76532212379999999997261356-42886-04647221687876776535777669865533446677665443322
Q ss_pred ----CCCCCCCCEEEEEEEEEEEECHHHHHHHHCCCCCCCH-----HHHHHHHHHHHCCCCCCC---CCCCCC-CCCCCC
Q ss_conf ----9998878589999999354074648987516899993-----789999999980699887---346575-435999
Q 001489 300 ----QGGQRREREFKVVIKLAARADLHHLGLFLQGRQADAP-----QEALQVLDIVLRELPTTR---YCPVGR-SFYSPD 366 (1068)
Q Consensus 300 ----~~~~~~~~~~~v~i~~~~~~~l~~l~~~l~~~~~~~~-----~~~lq~Lniilr~~~~~~---~~~~Gr-~ff~~~ 366 (1068)
.....+++.|+|+|++++++++.+|.+||.+...+.+ .+++++|++||++.+.+. ..++|+ +||..+
T Consensus 168 ~~~~~~~~~~~~~~~V~i~~~~~i~l~dL~~~l~~~~~~~~~~~~~~~~i~aL~~il~~~~~~~~~~i~~vg~nkFF~~~ 247 (1046)
T 4f1n_A 168 LQKKIDPELEEMVSQITLKFSGKVGLKDIYNDTTTQDTEVQESRMSAIDKTCLLSLLGAKFMSTDDLIFQVQGNKFFIFN 247 (1046)
T ss_dssp ----------CGGGGEEEEEEEEEEGGGGGSCSSCCCTTHHHHHHTCHHHHHHHHHHHHHHHCSSSCEEEETTTEEEECS
T ss_pred CCCCCCCCCCCCEEEEEEEEEEECCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCC
T ss_conf 23455555668459999987105179999999728985544333416789999999755655358964875784304679
Q ss_pred C-CCCCCCCCCEEEEEECEEEECCCCCEEEEEEECCEEEEECC-----------------CCHHHHHHHHHCCCC-----
Q ss_conf 9-98645899759972001110024780587540541246447-----------------619999999842899-----
Q 001489 367 L-GRRQPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEP-----------------LPVIDFVQQLLNRDV----- 423 (1068)
Q Consensus 367 ~-~~~~~lg~Gle~~~G~~~Svr~~~~~l~LniD~s~~~F~~~-----------------~~l~d~i~~~~~~~~----- 423 (1068)
. ....+|++|+|+|+|||+|||+++++|+||||+++++||++ ++|+|+|.++++..+
T Consensus 248 ~~~~~~~Lg~Gle~wrGffqSvRpa~~rLlLNvdvs~~aF~k~~~~~~~~~~~~~~~~~p~~lid~l~~~~~~~~~~~~~ 327 (1046)
T 4f1n_A 248 NFAKAIPFQIGGYLLQGFTVSLTHVYGGVALNTVSVPAPFIKHTKYLPGDPRFKNNEKEQFTLMDWIIECYHQSKAIRDI 327 (1046)
T ss_dssp TTCCEEECSSSEEEEEEEEEEEEEETTEEEEEEEEEEEEEECCSSSCTTSHHHHHCTTCCCCHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCCEEEEEEEEEEEEECCCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCC
T ss_conf 87751037881799976766678518940899725511178466667653100013568860999999986333332222
Q ss_pred -----CCCCCCHHHH-------HHHHHHHCCCEEEEEECC-------C-----CCCEEEEECCCCCCCCCEEEEECCC--
Q ss_conf -----9999996789-------999998159599993259-------8-----7733999435789987505541699--
Q 001489 424 -----SSRPLSDADR-------VKIKKALRGVRVEVTHRG-------N-----MRRKYRISGLTSQTTGELTFPVDES-- 477 (1068)
Q Consensus 424 -----~~~~~~~~~~-------~~i~~~Lkgl~V~~~~~~-------~-----~~r~~~I~~i~~~~a~~~~F~~~~~-- 477 (1068)
..+..+..++ .+++++|+||+|+++|.+ + ..+.++|.||+..++.+++|++++.
T Consensus 328 ~~~~~~~~~~~~~d~~~f~~~~~kl~k~LKgLkV~vth~~~~~~~~g~~~~~~~~r~k~I~GLs~~~a~~~~F~~~~~~~ 407 (1046)
T 4f1n_A 328 RYNPKTAPPPSVKDLNYFVEKNTDISALLKGLKVYRPYINYSINKDGTPKPPRKRSSKGIVGFTRESAVSMRFNVLESSL 407 (1046)
T ss_dssp SCTTTTSCCCCSSHHHHHHHHCHHHHHHHTTCEECCTTCC--------------CCCEECCEECSSCSSSCC--------
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEECCCCCC
T ss_conf 22322357875566544567889999984897899986675445566524434666469863468997731996168754
Q ss_pred -----------CCEEEHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf -----------917629999998819765789984699245887741145435840685334569999999999984199
Q 001489 478 -----------GTLKSVVEYFYETYGFVIQHTQWPCLQVGNQQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQR 546 (1068)
Q Consensus 478 -----------g~~isV~eYf~~kY~i~L~~p~lP~v~~g~~~~~~ylP~Elc~i~~gQ~~~~kl~~~q~~~mik~~~~~ 546 (1068)
++++||+|||+++|||+|+||+||||++|++ .+|||||||.|+|||+|+++|++ +++||++||++
T Consensus 408 ~~~~~~~~g~~~~~iTVadYFk~kYni~LkyP~LPcV~VG~~--~~ylPmElC~I~pGQr~~kKL~~--ts~MIKfAa~r 483 (1046)
T 4f1n_A 408 KKNSAPKPNEKPININTIDYFKRKYDITLKYPDMKLVNLGGK--NDVVPPECLTIVPGQKLKGQIFD--TKTYIDFSAIR 483 (1046)
T ss_dssp ---------------CHHHHHHHHSCCCCSCTTSCCEECSTT--TCEECGGGCCBCTTCBCCSCCCC--HHHHHHHHCCC
T ss_pred CCCCCCCCCCCCEEEEHHHHHHHHHCCCCCCCCCCEEEECCC--CCCCCCCEEEECCCCCCCCCCCC--HHHHHHHHCCC
T ss_conf 445666677675278899999987394047999877997897--74213104796689624512351--78999987569
Q ss_pred CHHHHHHHHHHHHH-----CCCCCCCCCCCCCEEECCCCEEEEEEECCCCCEEECCCCCC-------CCCCCCCCCEECC
Q ss_conf 46779999999983-----25999822232263872652287638708994441479984-------3359967500012
Q 001489 547 PHERERDIMQTVHH-----NAYHEDPYAREFGIKISEKLASVEARILPAPWLKYHDTGKE-------KDCLPQVGQWNMM 614 (1068)
Q Consensus 547 P~~R~~~I~~~~~~-----~~~~~~~~l~~fGi~i~~~~~~v~grvL~~P~i~y~~~~~~-------~~~~p~~g~Wn~~ 614 (1068)
|.+|++.|.+.+.. +..+.+++|++|| +|+.+|++|+|||||||+|+|+++... ....|++|.|||+
T Consensus 484 P~eR~~~I~~~~~~~~~~~l~~~~~~~l~~FG-~I~~~m~~V~gRVLppP~L~Yg~~~~~~~~~p~~~~~~p~~G~Wnm~ 562 (1046)
T 4f1n_A 484 PTEKFDLISRLSMPAIKRGLTDSEKEESSAPH-NSAYQFMRVPSRILDAPVVQFKESTFEYKDKSYGTKHEESKGNWNMK 562 (1046)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCCC---------CCSSSCCEEEEEECCCCCEECSSCEECCCCCCSSSSGGGGTTBCCCT
T ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCC-CCCCCEEEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 49999999999887541024666557678628-75685036778874897576168754555565434457667852688
Q ss_pred CCEEEECCE-ECEEEEEEEC-C-C----CCHHHHHHHHHHHHHHHHHCCCCCCCC--CCCCC------C--CC-------
Q ss_conf 733530722-0515999926-8-8----666899999999999988429545899--92068------9--99-------
Q 001489 615 NKKMVNGGT-VNHWICINFS-R-H----VQDSIARGFCFELAQMCYISGMAFNPE--PVIPP------I--SA------- 670 (1068)
Q Consensus 615 ~~kf~~~~~-i~~W~vv~~~-~-~----~~~~~~~~f~~~l~~~~~~~Gi~i~~~--p~~~~------~--~~------- 670 (1068)
+++|++++. +.+|.++++. . . ...+.+..|+..|++.|+.+||.+..+ |.+.. . ..
T Consensus 563 ~~kf~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~Gm~i~~~~~p~~~~~~~~~~~~~~~~~~~~r~ 642 (1046)
T 4f1n_A 563 GHQFISTPAKQVNLRAIFINNANTAPPASMESELDISMDKFASDVKQLGVDFNVSGKPILINQFGPPIKKFQGGGRGGRG 642 (1046)
T ss_dssp TCCCSBCCSSCEEEEEEEEECSSSCCCGGGHHHHHHHHHHHHHHHHTTTCCEECCSCCEEEESCCSCBC-----------
T ss_pred CCEEECCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 88771378666407999972787666542389999999999999986698547877874121345543111233433323
Q ss_pred --------------------CHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECC-CCCHHHHHHHHHHCCCCCEEEEE
Q ss_conf --------------------905599999999999986506999851999995089-98304455565211347201333
Q 001489 671 --------------------RPEHVEKVLKTRYHDAMTKLGQGKELDLLIVILPDN-NGSLYGDLKRICETDLGLVSQCC 729 (1068)
Q Consensus 671 --------------------~~~~~~~~l~~~~~~~~~~~~~~~~~~lvlvilp~~-~~~~Y~~IK~~~d~~~GI~TQci 729 (1068)
..++.+..|..++++ . ..++|||||||++ +.++|..||++||+++||+||||
T Consensus 643 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~---~~~~lvl~Ilp~~~~~~~Y~~IK~~~d~~~gV~TQcv 715 (1046)
T 4f1n_A 643 GRGSRGGRGGRGAPSGPPTFETSPGEISLLNLLEN----I---PSNTYILYVLRRGNDSAVYDRLKYITDLKFGALNSCV 715 (1046)
T ss_dssp -----------------CCCBCCTTHHHHHHHHHT----C---CTTEEEEEEESSSCCHHHHHHHHHHHTTTTCCCEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH----C---CCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCEEE
T ss_conf 33333333333344443211123179999999974----5---8997899996688871689999997613578144898
Q ss_pred ECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC----CCCCEEEEEEEECCCCCCCCCCCEEEE-----CC
Q ss_conf 002202441779999999998513972210121101477765----799919999972189999999982673-----18
Q 001489 730 LTKHVFKMSKQYMANVALKINVKVGGRNTVLVDAISRRIPLV----SDRPTIIFGADVTHPHPGEDSSPSIAA-----DW 800 (1068)
Q Consensus 730 ~~~~~~k~~~q~~~Ni~lKiN~KlGG~N~~l~~~~~~~~p~~----~~~~tmiiG~DVsHp~~g~~~~pSiaa-----d~ 800 (1068)
+.+++.|.++||++||+||||+||||+||.|++.. ++.+ +..+|||||+||+|++++. .+|||| |
T Consensus 716 ~~~t~~k~~~q~~~NI~lKiN~KLGG~n~~l~~~~---~~~l~~~~~~~ptMiiG~DVtH~p~~~--~~SiaavVaS~d- 789 (1046)
T 4f1n_A 716 VWDNFKKNSIQYNSNVVMKMNLKLLGSNHSLSIEN---NKLLIDKESNLPILVLGSDVTHYPEKD--QNSIASLVGSYD- 789 (1046)
T ss_dssp EHHHHTTCCHHHHHHHHHHHHHHTTCBCCEECTTG---GGGGEETTTTEECEEEEEEEECCSSTT--CEEEEEEEECCS-
T ss_pred EHHHHCCCCHHHHHHHHHHHHHHCCCEEEECCCCC---CCCCCCCCCCCCEEEEEEEEECCCCCC--CCEEEEEEEEEC-
T ss_conf 42351354278999999999986098511436654---432344456773499853111179899--872669999987-
Q ss_pred CCCCEEEEEEEECCC-CCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH-CCCCCCEEEEEECCCCHHHHHHHHHHHH
Q ss_conf 985305669997168-71420310000368876754057999999999999-0999944999825779157999999999
Q 001489 801 PEVTKYAGLVCAQAH-RQELIQDLFKTWQDPVRGAVSGGMIKELLISFRRA-TGQKPQRIIFYRDGVSEGQFYQVLLYEL 878 (1068)
Q Consensus 801 ~~~~ky~~~~~~Q~~-~~E~i~~l~~~~~~~~~~~~~~~~i~~~L~~f~~~-~~~~P~~IIiyRDGVSEGQf~~Vl~~Ei 878 (1068)
.++++|.+.+++|.+ ++|+|++| .+|+.++|+.|++. ++.+|++|||||||||||||.+|+++|+
T Consensus 790 ~~~t~y~s~~~~Q~~~~~Eii~~L-------------~~~~~~~L~~y~~~n~~~lP~~IIiYRDGVSEGQf~~Vl~~Ev 856 (1046)
T 4f1n_A 790 DKFTQFPGDYMLQDGPGEEIITNV-------------GSLMLNRLKIYQKHNNGKLPTKIMYFRDGVSVDQFSQVVKIEV 856 (1046)
T ss_dssp SSCCCCCEEEEEEEEETCCSCTTG-------------GGGHHHHHHHHHHTTTTCCCSSEEEEEESCCGGGHHHHHHTHH
T ss_pred CCCCEEEEEEEEECCCCCCHHHHH-------------HHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHH
T ss_conf 985858359998458872489889-------------9999999999998637999857999806876577899999999
Q ss_pred HHHHHHHHHHC------CCCCCCEEEEEEEECCCCCCCCCCCCCCCC------CCCCCCCCCCEEECCCCCCCCCCCEEE
Q ss_conf 99999999509------999999999999413333323358999787------778888866203115656788573662
Q 001489 879 DAIRKACASLE------PNYQPPVTFVVVQKRHHTRLFANNHHDRNA------VDRSGNILPGTVVDSKICHPTEFDFYL 946 (1068)
Q Consensus 879 ~~ik~a~~~~~------~~y~P~it~Ivv~KRhhtRff~~~~~~~~~------~~~~~N~~pGTVVD~~It~p~~~DFyL 946 (1068)
++|++||.++. .+|+|+||||||+||||||||+.+.++.+. .++++|++||||||++||||.+|||||
T Consensus 857 ~~Ik~a~~~~~~~~~~~~~y~Pkit~IVV~KRhhtRfF~~~~~~~d~~g~~~~~~~~~N~~pGTVVD~~It~p~~~DFyL 936 (1046)
T 4f1n_A 857 KSIKESVRKFGPQLNGGNKYDPPVTCIATVKRNQVRFIPIQENAKNEKGEEVAVQSMGNVMPGTVVDRGITSVAHFDFFI 936 (1046)
T ss_dssp HHHHHHHHHHTHHHHTSCCCCCCEEEEEEECSCSCCEEECCSEEECTTSCEEECEETTEECTTEEECSSSSCSSBEEEEE
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCEEEE
T ss_conf 99999999854300345577987799999657642351145554333344323456679999728646645667412899
Q ss_pred CCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 12567656446863799834998898889999999530565247774456156879999999653027666899986557
Q 001489 947 CSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSMTSG 1026 (1068)
Q Consensus 947 ~Sh~~~qGTarPthY~VL~De~~~~~d~Lq~LT~~LCy~y~r~t~sVSip~P~yYA~l~a~Rar~~~~~~~~d~~s~~~~ 1026 (1068)
|||.++|||||||||+||+||+++++|+||+|||+|||+|+|||++||||+||||||++|+|||+|+.....+..+..++
T Consensus 937 ~Sh~~~qGTarPthY~VL~De~~~~~d~lQ~LTy~LC~~y~r~t~sVsvPaP~yYAhlla~R~r~~~~~~~~~~~~~~~~ 1016 (1046)
T 4f1n_A 937 QSHQALKGTGVPCHYWCLYDENQSTSDYLQEICNNLCYIFGRSTTSVKVPAPVYYADLLCTRATCFFKAGFELNMAQAPK 1016 (1046)
T ss_dssp ECSCCCSSSCCCEEEEEEEESSCCCHHHHHHHHHHTTSCCTTSSBCCSSCHHHHHHHHHHHHHHHHHHHTSHHHHHCC--
T ss_pred ECCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 70334777665737999967999998999999999865533517886255789999999999999998641202222455
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf 778889888877766789998877899900111023680419
Q 001489 1027 TIGRGGMGGGVGARSTRGPGVGAAVRPLPALKENVKRVMFYC 1068 (1068)
Q Consensus 1027 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vh~~~~~~M~y~ 1068 (1068)
++.+ .+ ......+++|+.||++|+++||||
T Consensus 1017 -~~~~----------~~-~~~~~~~~~~~~~~~~~~~~mf~i 1046 (1046)
T 4f1n_A 1017 -EKGS----------KD-QPTVSKNVLLPQVNDNIKSVMYYI 1046 (1046)
T ss_dssp --------------------CCCHHHHSCCCCGGGTTSCTTC
T ss_pred -CCCC----------CC-CCCCCCCCCCCHHHHHHCCCEEEC
T ss_conf -6677----------66-555676654511335540152359
No 3
>2yhb_A QDE-2, post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; 3.65A {Neurospora crassa}
Probab=1.00 E-value=1 Score=851.36 Aligned_cols=408 Identities=31% Similarity=0.517 Sum_probs=345.7
Q ss_pred CCCCEEEE-CCEECEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 12733530-72205159999268866689999999999998842954589992-06899990559999999999998650
Q 001489 613 MMNKKMVN-GGTVNHWICINFSRHVQDSIARGFCFELAQMCYISGMAFNPEPV-IPPISARPEHVEKVLKTRYHDAMTKL 690 (1068)
Q Consensus 613 ~~~~kf~~-~~~i~~W~vv~~~~~~~~~~~~~f~~~l~~~~~~~Gi~i~~~p~-~~~~~~~~~~~~~~l~~~~~~~~~~~ 690 (1068)
|++++|++ +++|++|++++++...+.+.++.|++.|.+.|+.+||.+..+.. +... .. ++.+..+ .++++.+.
T Consensus 2 ~~~~~f~~p~~~l~~W~vv~~~~~~~~~~~~~f~~~l~~~~~~~G~~i~~p~~~~~~~-~~-~~~~~~~--~~~~~~~~- 76 (437)
T 2yhb_A 2 AMAVKVARPCRKIEKWTYLELKGSKANEGVPQAMTAFAEFLNRTGIPINPRFSPGMSM-SV-PGSEKEF--FAKVKELM- 76 (437)
T ss_dssp ---CCCSBCCCCBCSEEEEEEECSSCCCCHHHHHHHHHHHHHHTTCCBCSCCCCCEEE-EC-CSSHHHH--HHHHHHHH-
T ss_pred CCCCEECCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEECCCCCCCEEC-CC-CCHHHHH--HHHHHHCC-
T ss_conf 9888862699727779999912777879999999999999987697717998764103-77-8658887--99875045-
Q ss_pred CCCCCCEEEEEEEECCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCHH--HHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 69998519999950899830445556521134720133300220244177--9999999998513972210121101477
Q 001489 691 GQGKELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQ--YMANVALKINVKVGGRNTVLVDAISRRI 768 (1068)
Q Consensus 691 ~~~~~~~lvlvilp~~~~~~Y~~IK~~~d~~~GI~TQci~~~~~~k~~~q--~~~Ni~lKiN~KlGG~N~~l~~~~~~~~ 768 (1068)
.++||||||||+++.++|..||++||+++||+||||+.+++.|.++| |+.||+||||+||||+||.|+++ +
T Consensus 77 ---~~~~lvl~ilp~~~~~~Y~~iK~~~~~~~gI~TQcv~~~~~~k~~~q~s~~~Ni~lKiN~KlGG~n~~l~~~----~ 149 (437)
T 2yhb_A 77 ---SSHQFVVVLLPRKDVAIYNMVKRAADITFGVHTVCCVAEKFLSTKGQLGYFANVGLKVNLKFGGTNHNIKTP----I 149 (437)
T ss_dssp ---HTCSEEEEEESSCCHHHHHHHHHHHHTTSCCEEEEEEHHHHHCSTTHHHHHHHHHHHHHHHTTCBCCCCSSC----C
T ss_pred ---CCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCEEEEHHHHCCCCCHHHHHHHHHHHHHHHHCCCCEECCCC----C
T ss_conf ---898389999788983489999998701568541897266724766289999999999999849924023666----4
Q ss_pred CCCCCCCEEEEEEEECCCC---CC--CCCCCEEEE-----CCCCCCEEEEEEEECC-CCCHHHHHHHCCCCCCCCCCCHH
Q ss_conf 7657999199999721899---99--999982673-----1898530566999716-87142031000036887675405
Q 001489 769 PLVSDRPTIIFGADVTHPH---PG--EDSSPSIAA-----DWPEVTKYAGLVCAQA-HRQELIQDLFKTWQDPVRGAVSG 837 (1068)
Q Consensus 769 p~~~~~~tmiiG~DVsHp~---~g--~~~~pSiaa-----d~~~~~ky~~~~~~Q~-~~~E~i~~l~~~~~~~~~~~~~~ 837 (1068)
|++.+.+|||||+||+||+ ++ ....||||| | .+.++|.+.+++|. +++|+|++| +
T Consensus 150 ~~~~~~~tmiiG~DV~H~~~~~~g~~~~~~pSiaa~vaS~d-~~~~~y~~~~~~Q~~~~~E~i~~l-------------~ 215 (437)
T 2yhb_A 150 PLLAKGKTMVVGYDVTHPTNLAAGQSPASAPSIVGLVSTID-QHLGQWPAMVWNNPHGQESMTEQF-------------T 215 (437)
T ss_dssp HHHHTTCEEEEEEEECCCSCCCTTCCSTTSCEEEEEEECCS-TTCCCCCEEEEEETTTHHHHHHHH-------------H
T ss_pred CCCCCCCEEEEEEEEECCCCCCCCCCCCCCCEEEEEEEECC-CCCCEEEEEEEECCCCCHHHHHHH-------------H
T ss_conf 54577877999888752565567776789997999987349-996744027898677644489999-------------9
Q ss_pred HHHHHHHHHHHH---HCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCEEEEEEEECCCCCCCCCC
Q ss_conf 799999999999---9099994499982577915799999999999999999509999-999999999413333323358
Q 001489 838 GMIKELLISFRR---ATGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNY-QPPVTFVVVQKRHHTRLFANN 913 (1068)
Q Consensus 838 ~~i~~~L~~f~~---~~~~~P~~IIiyRDGVSEGQf~~Vl~~Ei~~ik~a~~~~~~~y-~P~it~Ivv~KRhhtRff~~~ 913 (1068)
+|++++|+.|++ +++.+|++|||||||||||||.+|+++|+++|++||.+++++| +|+||||||+||||||||+.+
T Consensus 216 ~~~~~~L~~~~~~~~~~~~~P~rIiiyRDGVseGqf~~V~~~El~~i~~a~~~~~~~~~~p~it~Ivv~Krh~tRff~~~ 295 (437)
T 2yhb_A 216 DKFKTRLELWRSNPANNRSLPENILIFRDGVSEGQFQMVIKDELPLVRAACKLVYPAGKLPRITLIVSVKRHQTRFFPTD 295 (437)
T ss_dssp HHHHHHHHHHHTCGGGTTCCCSEEEEEEESCCTTTHHHHHHHTHHHHHHHHHHHSCTTCCCEEEEEEEC-----------
T ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCEECCCC
T ss_conf 99999999998655433799863899917756677999999999999999998504367987799999714553254677
Q ss_pred CCCCCCCC-CCCCCCCCEEECCCCCCCCCCCEEECCCCCCCCCCCCCEEEEEECCC------CCCHHHHHHHHHHHHCCC
Q ss_conf 99978777-88888662031156567885736621256765644686379983499------889888999999953056
Q 001489 914 HHDRNAVD-RSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDEN------KFTADGLQSLTNNLCYTY 986 (1068)
Q Consensus 914 ~~~~~~~~-~~~N~~pGTVVD~~It~p~~~DFyL~Sh~~~qGTarPthY~VL~De~------~~~~d~Lq~LT~~LCy~y 986 (1068)
..+ .+ +.+|++||||||++||||.+||||||||.++|||+|||||+||+||+ ++++|+||+|||+|||+|
T Consensus 296 ~~~---~~~~~~N~~pGTvVD~~it~p~~~dFyL~Sh~~~qGTarPthY~Vl~de~f~~~~~~~~~d~lq~lTy~Lc~~y 372 (437)
T 2yhb_A 296 PKH---IHFKSKSPKEGTVVDRGVTNVRYWDFFLQAHASLQGTARSAHYTVLVDEIFRADYGNKAADTLEQLTHDMCYLF 372 (437)
T ss_dssp -----------------------------------------------CEEEEEESSHHHHHGGGHHHHHHHHHHHHHTC-
T ss_pred CCC---CCCCCCCCCCCEEECCCCCCCCCCEEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 543---34466899985571564467777328997331210468763899993785432357999899999999987752
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 524777445615687999999965302766689--998655777888988887776678999887789990011102368
Q 001489 987 ARCTRSVSIVPPAYYAHLAAFRARFYMEPETSD--SGSMTSGTIGRGGMGGGVGARSTRGPGVGAAVRPLPALKENVKRV 1064 (1068)
Q Consensus 987 ~r~t~sVSip~P~yYA~l~a~Rar~~~~~~~~d--~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vh~~~~~~ 1064 (1068)
+|||++||||||+||||++|+|||+|+.+..++ ++|+.+++. . .+...++++|++|+++
T Consensus 373 ~r~t~sVsipaP~yYAh~~a~R~r~~l~~~~~~~~~~~~~~~~~-------------~------~~~~~~~~~~~~l~~~ 433 (437)
T 2yhb_A 373 GRATKAVSICPPAYYADLVCDRARIHQKELFDALDENDSVKTDD-------------F------ARWGNSGAVHPNLRNS 433 (437)
T ss_dssp ---------CHHHHHHHHHHHHHHHHCHHHHHHHHHTSCCCHHH-------------H------HHHHHHTSCCGGGTTS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC-------------C------CCCCCCCCCCHHHCCC
T ss_conf 03158877487899999999999987454115777777667777-------------4------3222346659766378
Q ss_pred EEEC
Q ss_conf 0419
Q 001489 1065 MFYC 1068 (1068)
Q Consensus 1065 M~y~ 1068 (1068)
||||
T Consensus 434 mfyl 437 (437)
T 2yhb_A 434 MYYI 437 (437)
T ss_dssp CTTC
T ss_pred CEEC
T ss_conf 3569
No 4
>1yvu_A Hypothetical protein AQ_1447; RNAse H fold, RNA binding protein, gene regulation; 2.90A {Aquifex aeolicus} SCOP: b.34.14.1 c.55.3.10 PDB: 2f8s_A 2f8t_A 2nub_A
Probab=1.00 E-value=1 Score=851.36 Aligned_cols=653 Identities=15% Similarity=0.149 Sum_probs=489.5
Q ss_pred EEEEEEEECC-CCC---EEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEECCCEEEECCCCCCCCCEEEEE
Q ss_conf 7224785649-985---266578972776530121999999999997401498321561674278417789996308999
Q 001489 217 KANHFFAELP-DKD---LHQYDVTITPEVTSRGVNRAVMEQLVKLYRESHLGKRLPAYDGRKSLYTAGPLPFLSKEFRIT 292 (1068)
Q Consensus 217 ~tN~f~i~~~-~~~---iy~YdV~I~pe~~~k~~~r~i~~~l~~~~~~~~~~~~~~vyDG~~~lys~~~Lp~~~~~~~v~ 292 (1068)
..|.|++... ..+ +|+= +-|+...++++.-|+..+. . | ++.|-.....|++.+...+ ..-..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~----~--~--~~~~~~~~~~~~~~~~~~~--~~~~~ 71 (706)
T 1yvu_A 6 LLNLYRIEYRPKDTTFTVFKP----THEIQKEKLNKVRWRVFLQ----T--G--LPTFRREDEFWCAGKVEKD--TLYLT 71 (706)
T ss_dssp EESEEEEEECCSSCEEBCCEE----SSCCCHHHHHHHHHHHHHH----H--C--SCEEEETTEEEESSCCTTC--CCEEE
T ss_pred HHHHHEEEECCCCCEEEEECC----HHHHHHHHHHHEEEEEEEE----C--C--CCCCCCCCCCEECCCCCCC--EEEEE
T ss_conf 535442551367733676345----0788787641201476510----1--7--8652015310343520132--48998
Q ss_pred EECCCCCCCCCCCCCEEEEEEEEEEEECHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 70599999998878589999999354074648987516899993789999999980699887346575435999998645
Q 001489 293 LLDDDDGQGGQRREREFKVVIKLAARADLHHLGLFLQGRQADAPQEALQVLDIVLRELPTTRYCPVGRSFYSPDLGRRQP 372 (1068)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~v~i~~~~~~~l~~l~~~l~~~~~~~~~~~lq~Lniilr~~~~~~~~~~Gr~ff~~~~~~~~~ 372 (1068)
..+ .. +|+|++++++..- .-..+.+++|+++++|+.. ..++..+||+||++. ....
T Consensus 72 ~~~----------~~--~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~-~l~~~~igr~~~~~~--~~~~ 127 (706)
T 1yvu_A 72 LSN----------GE--IVELKRVGEEEFR---------GFQNERECQELFRDFLTKT-KVKDKFISDFYKKFR--DKIT 127 (706)
T ss_dssp ECS----------SS--CEEEEECCCEECC---------CCSCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHH--HHHE
T ss_pred CCC----------CC--EEEEEEEEEEECC---------CCCCCHHHHHHHHHHHHHC-CCHHHHHCCCCCCCC--CCCC
T ss_conf 179----------97--8999999886156---------7899989999999999975-774755172445833--5620
Q ss_pred C---CCCEEEEEECEEEECCCC-CEEEEEEECCEEEEECCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCEEEEE
Q ss_conf 8---997599720011100247-805875405412464476199999998428999999996789999998159599993
Q 001489 373 L---GEGLESWRGFYQSIRPTQ-MGLSLNIDMSSTAFIEPLPVIDFVQQLLNRDVSSRPLSDADRVKIKKALRGVRVEVT 448 (1068)
Q Consensus 373 l---g~Gle~~~G~~~Svr~~~-~~l~LniD~s~~~F~~~~~l~d~i~~~~~~~~~~~~~~~~~~~~i~~~Lkgl~V~~~ 448 (1068)
+ ..++|+|+||..||+..+ ++++||+|++|+ |++..+|+|+|.+ ... .. ..+..+
T Consensus 128 i~~~~~~l~iwPG~~tsi~~~e~~~~~L~~DvshK-vlr~~Tvld~l~~-~~~------~~-------------~~~~~~ 186 (706)
T 1yvu_A 128 VQGKNRKIALIPEVNEKVLKSEEGYFLLHLDLKFR-IQPFETLQTLLER-NDF------NP-------------KRIRVK 186 (706)
T ss_dssp EECSSCEEEEEEEEEEEEEEBSSSCEEEEEEEEEE-EEESSCHHHHHHH-CCC------CC-------------TTCEEE
T ss_pred CCCCCCCEEECCCEEEEEEECCCCCEEEEEEEEEE-ECCCCHHHHHHHH-HHH------CC-------------HHHHHH
T ss_conf 56778767981686889885267875999973404-5566539999997-230------46-------------568864
Q ss_pred ECCCCCCEE--EEECC-CCCCCCCEEEEECCCCCEEEHHHHHHHHCCCC--------CCCCCCCEEEECCCCCCCCCCCC
Q ss_conf 259877339--99435-78998750554169991762999999881976--------57899846992458877411454
Q 001489 449 HRGNMRRKY--RISGL-TSQTTGELTFPVDESGTLKSVVEYFYETYGFV--------IQHTQWPCLQVGNQQRPNYLPME 517 (1068)
Q Consensus 449 ~~~~~~r~~--~I~~i-~~~~a~~~~F~~~~~g~~isV~eYf~~kY~i~--------L~~p~lP~v~~g~~~~~~ylP~E 517 (1068)
|. +++| +|.++ ++...+..+|. + |..+| ||+++|++. .+.+.+|++..+. +. .|++
T Consensus 187 y~---n~ty~~riddi~~~~~~P~~~f~-~--g~~iS---Yyk~~~~~~q~ll~~r~~~~~~~~~~v~~~--~~--~p~~ 253 (706)
T 1yvu_A 187 PI---GIDFVGRVQDVFKAKEKGEEFFR-L--CMERS---THKSSKKAWEELLKNRELREKAFLVVLEKG--YT--YPAT 253 (706)
T ss_dssp ET---TCCCCEEEEEEEESTTSCHHHHH-H--HHHTC---SSHHHHHHHHHHHHCHHHHHHCEEEEETTS--CE--EEGG
T ss_pred CC---CCEECCCCCCCCCCCCCCCEEEC-C--CCCCC---EEECCCCCCHHHHHCCCCCCCCCEEEECCC--CC--CCCE
T ss_conf 32---55633365740046889513842-8--99755---585146754144430244567724884268--87--7864
Q ss_pred CEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCEEEEEEECCCCCEEECC
Q ss_conf 35840685334569999999999984199467799999999832599982223226387265228763870899444147
Q 001489 518 VCKIVEGQRYSKRLNERQITALLKVTCQRPHERERDIMQTVHHNAYHEDPYAREFGIKISEKLASVEARILPAPWLKYHD 597 (1068)
Q Consensus 518 lc~i~~gQ~~~~kl~~~q~~~mik~~~~~P~~R~~~I~~~~~~~~~~~~~~l~~fGi~i~~~~~~v~grvL~~P~i~y~~ 597 (1068)
+|.. --+..+|+++|+++|+++++.+|.+|.+.|.++++.+ +++|+.|||+|+++|+.|+|||||+|+|.+..
T Consensus 254 lL~p---lc~~t~Ltd~q~~~mik~t~~~P~~R~~~i~~~~~~~----~~~L~~fGi~i~~~~~~v~gRVLp~P~i~~~~ 326 (706)
T 1yvu_A 254 ILKP---VLTYENLEDEERNEVADIVRMEPGKRLNLIRYILRRY----VKALRDYGWYISPEEERAKGKLNFKDTVLDAK 326 (706)
T ss_dssp GEEE---CCCCC------HHHHTSTTSCCHHHHHHHHHHHHHHH----HHHHHTTTEEECSSCEECCEECCCCCCEECSS
T ss_pred EECC---CCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHH----HHHHHHCCCEECCCEEECCCEECCCCEEECCC
T ss_conf 4300---1213799999999999998259999999999999998----99999769888886422136873895066478
Q ss_pred CCCCCCCCCCCCCEECCCCEEEECCEECE---EEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHH
Q ss_conf 99843359967500012733530722051---599992688666899999999999988429545899920689999055
Q 001489 598 TGKEKDCLPQVGQWNMMNKKMVNGGTVNH---WICINFSRHVQDSIARGFCFELAQMCYISGMAFNPEPVIPPISARPEH 674 (1068)
Q Consensus 598 ~~~~~~~~p~~g~Wn~~~~kf~~~~~i~~---W~vv~~~~~~~~~~~~~f~~~l~~~~~~~Gi~i~~~p~~~~~~~~~~~ 674 (1068)
+.......+..+.|+++ .+|+.++.++. |.++ +..+ +..++.|++.|.+.|+.+||.++.++...... +.
T Consensus 327 g~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~lW~~i-~~~~--~~~~~~f~~~L~~~~~~~G~~i~~p~~~~~~~---~~ 399 (706)
T 1yvu_A 327 GKNTKVITNLRKFLELC-RPFVKKDVLSVEIISVSV-YKKL--EWRKEEFLKELINFLKNKGIKLKIKGKSLILA---QT 399 (706)
T ss_dssp CCEECCSSCCHHHHHHC-CCCCSCSEEEEEEEEEEC--------CHHHHHHHHHHHHHHTTTCEEEEEEEEEEEC---SS
T ss_pred CCCCEECCCCCCCCCCC-CCEECCCCCCCCEEEEEE-ECCH--HHHHHHHHHHHHHHHHHCCCEECCCCCCCCCC---HH
T ss_conf 97430236875430003-741114325643389998-1661--68999999999999987496206874223340---01
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCEEEEEEEECC-------CCCHHHHHHHHHHCCCCCEEEEEECCCCCCC-CHHHHHHHH
Q ss_conf 99999999999986506999851999995089-------9830445556521134720133300220244-177999999
Q 001489 675 VEKVLKTRYHDAMTKLGQGKELDLLIVILPDN-------NGSLYGDLKRICETDLGLVSQCCLTKHVFKM-SKQYMANVA 746 (1068)
Q Consensus 675 ~~~~l~~~~~~~~~~~~~~~~~~lvlvilp~~-------~~~~Y~~IK~~~d~~~GI~TQci~~~~~~k~-~~q~~~Ni~ 746 (1068)
++..++.+.....+ ..+++|+|||+|++ +.++|..||++|+ ++||+||||..+++.+. ..|++.||+
T Consensus 400 ~~~~~~~l~~~~~~----~~~~qlvlvIlp~~~~~~~~~~~~~Y~~IK~~~~-~~GI~TQcv~~~tl~~~~~~q~~~NI~ 474 (706)
T 1yvu_A 400 REEAKEKLIPVINK----IKDVDLVIVFLEEYPKVDPYKSFLLYDFVKRELL-KKMIPSQVILNRTLKNENLKFVLLNVA 474 (706)
T ss_dssp TTHHHHHHHHHHTT----TSSCSEEEEEEC----------CHHHHHHHHHHH-HTTCCCEEEEHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCC----CCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHH-CCCCCEEEEEHHHCCCCCHHHHHHHHH
T ss_conf 99999999987500----5899589999777444455567547999999985-289854998010216653078999999
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCEEEE-----C-CCCCCEEEEEEEECCCCCHHH
Q ss_conf 9998513972210121101477765799919999972189999999982673-----1-898530566999716871420
Q 001489 747 LKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAA-----D-WPEVTKYAGLVCAQAHRQELI 820 (1068)
Q Consensus 747 lKiN~KlGG~N~~l~~~~~~~~p~~~~~~tmiiG~DVsHp~~g~~~~pSiaa-----d-~~~~~ky~~~~~~Q~~~~E~i 820 (1068)
||||+||||+||.|+.+ ...+|||||+||+||+.+. ..||++| | +...++|.+....| .++|++
T Consensus 475 lkiN~KLGG~nw~L~~~--------~~~~tmiIGiDVsH~~~~~-~~pSv~g~vas~d~~g~~~~~~~~~~~q-~~~ei~ 544 (706)
T 1yvu_A 475 EQVLAKTGNIPYKLKEI--------EGKVDAFVGIDISRITRDG-KTVNAVAFTKIFNSKGELVRYYLTSYPA-FGEKLT 544 (706)
T ss_dssp HHHHHHTTCCSCEESCC--------TTCCSEEEEECEEECCCSS-SCCCEEEEEEEECTTSCEEEEEEEEECS-CTTHHH
T ss_pred HHHHHHHCCEEEEECCC--------CCCCEEEEEEEEECCCCCC-CCCEEEEEEEEECCCCCEEEEEEEECCC-CCCHHH
T ss_conf 99999849861560258--------8885599999886168788-8856999999985899889999873366-642699
Q ss_pred HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
Q ss_conf 31000036887675405799999999999909999449998257791579999999999999999950999999999999
Q 001489 821 QDLFKTWQDPVRGAVSGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVV 900 (1068)
Q Consensus 821 ~~l~~~~~~~~~~~~~~~~i~~~L~~f~~~~~~~P~~IIiyRDGVSEGQf~~Vl~~Ei~~ik~a~~~~~~~y~P~it~Iv 900 (1068)
+++ +..+|+.|++.++.+|++|||||||||| ++|+++|++||.+ |.|+|||||
T Consensus 545 ~~l----------------~~~~l~~~~~~~~~~P~rIIiyRDGVse-------~~El~~Ik~A~~~----~~pkit~Iv 597 (706)
T 1yvu_A 545 EKA----------------IGDVFSLLEKLGFKKGSKIVVHRDGRLY-------RDEVAAFKKYGEL----YGYSLELLE 597 (706)
T ss_dssp HHH----------------HHHHHHHHHHTTCCTTCEEEEEESSCCC-------HHHHHHHHHHHHH----HTCEEEEEE
T ss_pred HHH----------------HHHHHHHHHHHCCCCCCEEEEEECCCCC-------HHHHHHHHHHHHH----CCCCEEEEE
T ss_conf 999----------------9999999998649998379999688885-------8999999999997----299479999
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCEEECCCCC-CCCCCCCCEEE-EEECCCCCCHHHHHHH
Q ss_conf 941333332335899978777888886620311565678857366212567-65644686379-9834998898889999
Q 001489 901 VQKRHHTRLFANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAG-IQGTSRPAHYH-VLWDENKFTADGLQSL 978 (1068)
Q Consensus 901 v~KRhhtRff~~~~~~~~~~~~~~N~~pGTVVD~~It~p~~~DFyL~Sh~~-~qGTarPthY~-VL~De~~~~~d~Lq~L 978 (1068)
|+||||||||+. +||+||||||. ..+||||++|.+ +|||+||+||+ |++|+ ++|+||+|
T Consensus 598 V~Krh~tRfF~~-----------~np~pGTvVD~-----~~~~ffL~ss~~~~qGT~rPthY~vv~~D~---~~d~Lq~l 658 (706)
T 1yvu_A 598 IIKRNNPRFFSN-----------EKFIKGYFYKL-----SEDSVILATYNQVYEGTHQPIKVRKVYGEL---PVEVLCSQ 658 (706)
T ss_dssp EECSSCCCEECS-----------CSCCTTEEEEB-----SSSEEEECCSCCCSTTCCCCEEEEEEECSS---CHHHHHHH
T ss_pred EEECCCEEEECC-----------CCCCCEEEEEC-----CCCEEEEEECCCCCCCCCCCEEEEEEECCC---CHHHHHHH
T ss_conf 970467158788-----------99997389972-----797699994477667887887999991899---99999999
Q ss_pred HHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf 99953056524777445615687999999965302766
Q 001489 979 TNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPE 1016 (1068)
Q Consensus 979 T~~LCy~y~r~t~sVSip~P~yYA~l~a~Rar~~~~~~ 1016 (1068)
||+|||+|+|||++||+|+|+||||++|+|+|.+++++
T Consensus 659 ty~Lc~ly~r~t~svslPaPiyYAhllA~r~~~~~~p~ 696 (706)
T 1yvu_A 659 ILSLTLMNYSSFQPIKLPATVHYSDKITKLMLRGIEPI 696 (706)
T ss_dssp HHHGGGGGCCSSSCCCSCTTTTTHHHHHHHHHTCSSCC
T ss_pred HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC
T ss_conf 99989860164899604758999999999997427811
No 5
>1u04_A Argonaute, hypothetical protein PF0537; RNAI, silencing, PIWI, PAZ, RISC, slicer, RNAse H hydrolase-gene regulation complex; 2.25A {Pyrococcus furiosus} SCOP: b.34.14.1 c.55.3.10 PDB: 1z25_A 1z26_A
Probab=1.00 E-value=1 Score=760.06 Aligned_cols=657 Identities=14% Similarity=0.091 Sum_probs=478.2
Q ss_pred CCCEEEEEEEEEEC---CCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEECCCE-EEECCCCCCCCC
Q ss_conf 83369722478564---99852665789727765301219999999999974014983215616742-784177899963
Q 001489 212 TRCIVKANHFFAEL---PDKDLHQYDVTITPEVTSRGVNRAVMEQLVKLYRESHLGKRLPAYDGRKS-LYTAGPLPFLSK 287 (1068)
Q Consensus 212 ~~v~l~tN~f~i~~---~~~~iy~YdV~I~pe~~~k~~~r~i~~~l~~~~~~~~~~~~~~vyDG~~~-lys~~~Lp~~~~ 287 (1068)
-++.|.+|||++.. |+ .+|+|+|++.|++..+ +...++.. ++.. +| -.+|||..- ||+.++|+.
T Consensus 2 ~~~~~~~n~~~~~~~~~~~-~~y~y~v~~~p~~~~~-~~~~~~~~----~~~~-~g--~~~fdg~~~~l~~~~~l~~--- 69 (771)
T 1u04_A 2 MKAIVVINLVKINKKIIPD-KIYVYRLFNDPEEELQ-KEGYSIYR----LAYE-NV--GIVIDPENLIIATTKELEY--- 69 (771)
T ss_dssp CEEEEEBSEEEBCGGGSCS-CEEEEEC-------------CCHHH----HHHH-TT--EEEEETTTTEEEESSCCCC---
T ss_pred CCEEEEEEEEEEECCCCCC-EEEEEEEECCCHHHHH-HHHHHHHH----HHHH-CC--CEEECCCCEEEECCCEECC---
T ss_conf 5069994068873246887-0599986238758889-99989998----7865-37--1896475203222532146---
Q ss_pred EEEEEEECCCCCCCCCCCCCEEEEEEEEEEEECHHHHHHHHCCCCCCCHHHHHHHHHHHHCCC-CCCC-----CCCCCCC
Q ss_conf 089997059999999887858999999935407464898751689999378999999998069-9887-----3465754
Q 001489 288 EFRITLLDDDDGQGGQRREREFKVVIKLAARADLHHLGLFLQGRQADAPQEALQVLDIVLREL-PTTR-----YCPVGRS 361 (1068)
Q Consensus 288 ~~~v~~~~~~~~~~~~~~~~~~~v~i~~~~~~~l~~l~~~l~~~~~~~~~~~lq~Lniilr~~-~~~~-----~~~~Gr~ 361 (1068)
....++++++.+++++ +|++|+++|.. ...+ +..+||+
T Consensus 70 -----------------~~~~~~~~~~~~~~~~-------------------~~~~n~i~r~~l~~~~~~~~~l~~~~r~ 113 (771)
T 1u04_A 70 -----------------EGEFIPEGEISFSELR-------------------NDYQSKLVLRLLKENGIGEYELSKLLRK 113 (771)
T ss_dssp -----------------SSCCEEEEEECGGGSC-------------------HHHHHHHHHHHHHHTTCSHHHHHHHHTT
T ss_pred -----------------CCCEEEEEEEECCEEC-------------------HHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf -----------------8973789999904402-------------------9999999999998746205889997662
Q ss_pred CCCCCCCCCCCCCCCEEEEEECEEEECCCCCEEEEEEECCEEEEECCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 35999998645899759972001110024780587540541246447619999999842899999999678999999815
Q 001489 362 FYSPDLGRRQPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVQQLLNRDVSSRPLSDADRVKIKKALR 441 (1068)
Q Consensus 362 ff~~~~~~~~~lg~Gle~~~G~~~Svr~~~~~l~LniD~s~~~F~~~~~l~d~i~~~~~~~~~~~~~~~~~~~~i~~~Lk 441 (1068)
||++. .+ ..+++|.|+..|||..+++++||+|++|++ .+..+|+|+|.++. ...+.+.+.+.
T Consensus 114 ~~~~~-----~~-~~~~~~~~~~tsi~~~e~~~ll~~di~hkv-~r~~t~~d~~~~~~-----------~~~~~~~~~~~ 175 (771)
T 1u04_A 114 FRKPK-----TF-GDYKVIPSVEMSVIKHDEDFYLVIHIIHQI-QSMKTLWELVNKDP-----------KELEEFLMTHK 175 (771)
T ss_dssp TSCCE-----EE-TTEEEEEEEEEEEEECSSCEEEEEEEEEEE-EESSCHHHHTTTCH-----------HHHHHHHHHST
T ss_pred CCCCC-----CC-CCCEEEECCEEEEEECCCCEEEEEEEEEEE-EEHHHHHHHHHHHH-----------HHHHHHHHHCC
T ss_conf 07983-----34-662799873466885378438999866567-55567999999999-----------99998887356
Q ss_pred CCEEEEE--------ECCCCCCEEEEECCCCCCCCCE--EE---EECCCC-CEEEHHHHHHHHCCCCCCCCCCCEEEECC
Q ss_conf 9599993--------2598773399943578998750--55---416999-17629999998819765789984699245
Q 001489 442 GVRVEVT--------HRGNMRRKYRISGLTSQTTGEL--TF---PVDESG-TLKSVVEYFYETYGFVIQHTQWPCLQVGN 507 (1068)
Q Consensus 442 gl~V~~~--------~~~~~~r~~~I~~i~~~~a~~~--~F---~~~~~g-~~isV~eYf~~kY~i~L~~p~lP~v~~g~ 507 (1068)
|..|.+. |.-+ +++|+|++ .++..+.. +| ..+ ++ .++++.+||+++|++ ++++||+|+...
T Consensus 176 g~~~~~~~~~~~~~vy~~n-~~~Y~~~~-~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~y~~~y~i--~d~~QPllvs~~ 250 (771)
T 1u04_A 176 ENLMLKDIASPLKTVYKPC-FEEYTKKP-KLDHNQEIVKYWYNYHIE-RYWNTPEAKLEFYRKFGQ--VDLKQPAILAKF 250 (771)
T ss_dssp TTCEEEETTSTTCCEEEEC-BCTTSSCB-CEECCHHHHHHHHHHHHH-HHCCSHHHHHHHHHHHCS--CCTTSCEEEEEE
T ss_pred CCEEEEECCCCCEEEEECC-CCEEECCC-CCCCCCCCHHHEECEEEC-CCCCCCCHHHHHHHHCCC--CCCCCCEEEECC
T ss_conf 7378531134442686046-62441588-512378985440130213-778874116878876486--767887698514
Q ss_pred CC-------CCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHC-----CCCC--CCCCCCCC
Q ss_conf 88-------7741145435840685334569999999999984199467799999999832-----5999--82223226
Q 001489 508 QQ-------RPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPHERERDIMQTVHHN-----AYHE--DPYAREFG 573 (1068)
Q Consensus 508 ~~-------~~~ylP~Elc~i~~gQ~~~~kl~~~q~~~mik~~~~~P~~R~~~I~~~~~~~-----~~~~--~~~l~~fG 573 (1068)
++ +.+||.||||.++. ...+++.+.|++|..++...|.+|.+.+.++.+.+ .-+. ...|+.|+
T Consensus 251 ~~~~~~~~~~~i~LiPELc~~TG---~~~~~~~~~MK~la~~trl~P~~R~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~ 327 (771)
T 1u04_A 251 ASKIKKNKNYKIYLLPQLVVPTY---NAEQLESDVAKEILEYTKLMPEERKELLENILAEVDSDIIDKSLSEIEVEKIAQ 327 (771)
T ss_dssp SCC-----CCCEEECTTTEEEEE---EGGGC----CCHHHHHHCCCHHHHHHHHHHHHHHCCCSSBCSSCCEEEEEECCG
T ss_pred HHHCCCCCCCEEEECHHHHHHCC---CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 43246788960364247653367---435666899999999877798999999999999861544307988999975554
Q ss_pred EEECCCCEEEEEEECCCCCEEECCCCCCCCCCCCCCCEE--CCCCEEEECCE----EC------EEEEEEECCCCCHHHH
Q ss_conf 387265228763870899444147998433599675000--12733530722----05------1599992688666899
Q 001489 574 IKISEKLASVEARILPAPWLKYHDTGKEKDCLPQVGQWN--MMNKKMVNGGT----VN------HWICINFSRHVQDSIA 641 (1068)
Q Consensus 574 i~i~~~~~~v~grvL~~P~i~y~~~~~~~~~~p~~g~Wn--~~~~kf~~~~~----i~------~W~vv~~~~~~~~~~~ 641 (1068)
.++.. +.|.++++.+-.|.+.+. .....+.|. +++.+++.+.. ++ .|.++ ..+. .+.+
T Consensus 328 -~l~~~-~~v~~~~~~~~~i~~~~~-----~~~~~adW~~~~~~~~~~~~~~~p~~l~~~~~i~~wil~-~~~~--~~~~ 397 (771)
T 1u04_A 328 -ELENK-IRVRDDKGNSVPISQLNV-----QKSQLLLWTNYSRKYPVILPYEVPEKFRKIREIPMFIIL-DSGL--LADI 397 (771)
T ss_dssp -GGGSS-EEEECSSSCEEESCCC-------------CGGGGSCCCCCCCCSBCCTHHHHCCCCCEEEEE-ETTS--CHHH
T ss_pred -CCCCC-CCCCCCCCCCCCEEECCC-----CCCCCCCCCHHHCCCCCEECCCCHHHHHCCCCCCEEEEE-ECCC--HHHH
T ss_conf -11767-500254566453263276-----777667760553778511046542655043555359999-5771--6889
Q ss_pred HHHH---------HHHHHHHHHCC-----------CCCCCC-----CC-CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 9999---------99999988429-----------545899-----92-0689999055999999999999865069998
Q 001489 642 RGFC---------FELAQMCYISG-----------MAFNPE-----PV-IPPISARPEHVEKVLKTRYHDAMTKLGQGKE 695 (1068)
Q Consensus 642 ~~f~---------~~l~~~~~~~G-----------i~i~~~-----p~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 695 (1068)
.+|+ +.|.+.+..++ |.++.. +. +.....+.+.++..++.+.+... ...
T Consensus 398 ~~f~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~p~~~~~~~~~~i~~dl~~~~~i~~~l~~~~~~~~-----~~~ 472 (771)
T 1u04_A 398 QNFATNEFRELVKSMYYSLAKKYNSLAKKARSTNEIGLPFLDFRGKEKVITEDLNSDKGIIEVVEQVSSFMK-----GKE 472 (771)
T ss_dssp HHHHHHHHHHHHHHHCC-----------------------------CEEEEECTTSHHHHHHHHHHHHHHHT-----TCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHCC-----CCC
T ss_conf 988888766677899998753223101103566422578733346751431565534779999999997515-----789
Q ss_pred CEEEEEEEE-CCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCC----C-----HHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 519999950-899830445556521134720133300220244----1-----779999999998513972210121101
Q 001489 696 LDLLIVILP-DNNGSLYGDLKRICETDLGLVSQCCLTKHVFKM----S-----KQYMANVALKINVKVGGRNTVLVDAIS 765 (1068)
Q Consensus 696 ~~lvlvilp-~~~~~~Y~~IK~~~d~~~GI~TQci~~~~~~k~----~-----~q~~~Ni~lKiN~KlGG~N~~l~~~~~ 765 (1068)
++|+||+++ .++.+.|..||+.| ++.||+||||..+|+.+. + .+++.||+||||+||||+||.|+.
T Consensus 473 ~~lvlv~l~~~~~~d~Y~~IK~~~-~~~gIpTQcV~~~Tl~~~~~k~~~~~l~~sia~NIalqIn~KLGG~pW~L~~--- 548 (771)
T 1u04_A 473 LGLAFIAARNKLSSEKFEEIKRRL-FNLNVISQVVNEDTLKNKRDKYDRNRLDLFVRHNLLFQVLSKLGVKYYVLDY--- 548 (771)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHH-HHTTEEEEEEEHHHHHHCEETTEEEEECHHHHHHHHHHHHHHTTCBCCEESC---
T ss_pred CCEEEEEECCCCCCCHHHHHHHHH-HCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECC---
T ss_conf 878999975898866689999998-5489663998435006765443323132899999999999985983326068---
Q ss_pred CCCCCCCCCCEEEEEEEECCCCCCCCCCCEEEE-----CCCCCCEEEEEEEECCCCCHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 477765799919999972189999999982673-----189853056699971687142031000036887675405799
Q 001489 766 RRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAA-----DWPEVTKYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMI 840 (1068)
Q Consensus 766 ~~~p~~~~~~tmiiG~DVsHp~~g~~~~pSiaa-----d~~~~~ky~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~~~i 840 (1068)
| ..+|||||+||+|++++. .++|++| | ....+|.+.+..|.++ |.+. + ..|+
T Consensus 549 ---p---~~~tmiIGiDV~H~~~~~-~svs~~A~V~s~d-g~~~~~~s~~~~~~~~-E~i~-l-------------~~~l 605 (771)
T 1u04_A 549 ---R---FNYDYIIGIDVAPMKRSE-GYIGGSAVMFDSQ-GYIRKIVPIKIGEQRG-ESVD-M-------------NEFF 605 (771)
T ss_dssp ---C---CSSSEEEEEEEEEECCTT-TCEEEEEEEEETT-SCEEEEEEEECCCCSS-SSCC-H-------------HHHH
T ss_pred ---C---CCCEEEEEEEEECCCCCC-CCEEEEEEEECCC-CCEEEEEEEEEECCCC-CEEC-H-------------HHHH
T ss_conf ---9---998799999987479899-7469999997799-9789998887303776-3773-9-------------9999
Q ss_pred HHHHHHHHHH-CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCCCCC
Q ss_conf 9999999999-099994499982577915799999999999999999509999999999999413333323358999787
Q 001489 841 KELLISFRRA-TGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHHDRNA 919 (1068)
Q Consensus 841 ~~~L~~f~~~-~~~~P~~IIiyRDGVSEGQf~~Vl~~Ei~~ik~a~~~~~~~y~P~it~Ivv~KRhhtRff~~~~~~~~~ 919 (1068)
+++|..|++. ++.+|++|||||||+ |+++|+++|++||.+. .|+||||+|+|||||||| .+
T Consensus 606 ~~~L~~y~~~n~~~lP~RIIiyRDG~-------v~~~El~~i~ea~~~~----~p~itfIvV~Krh~tRfF-~~------ 667 (771)
T 1u04_A 606 KEMVDKFKEFNIKLDNKKILLLRDGR-------ITNNEEEGLKYISEMF----DIEVVTMDVIKNHPVRAF-AN------ 667 (771)
T ss_dssp HHHHHHHHHTTCCCTTCEEEEECSBC-------CCHHHHHHHHHHHHHH----TCEEEEEEEESCCCCCBS-SC------
T ss_pred HHHHHHHHHHHCCCCCCEEEEECCCC-------CCHHHHHHHHHHHHHC----CCCEEEEEEEECCCEEEE-CC------
T ss_conf 99999999970799997799991888-------8789999999999855----998899999945751564-69------
Q ss_pred CCCCCCCCCCEEECCCCCCCCCCCEEECCCC--CCCCCCCCCEE--EEEECCCCCC----HHHHHHHHHHHHCCCCCCCC
Q ss_conf 7788888662031156567885736621256--76564468637--9983499889----88899999995305652477
Q 001489 920 VDRSGNILPGTVVDSKICHPTEFDFYLCSHA--GIQGTSRPAHY--HVLWDENKFT----ADGLQSLTNNLCYTYARCTR 991 (1068)
Q Consensus 920 ~~~~~N~~pGTVVD~~It~p~~~DFyL~Sh~--~~qGTarPthY--~VL~De~~~~----~d~Lq~LT~~LCy~y~r~t~ 991 (1068)
.+|||||| . ||||+||. ++|||+||+|| +||+|+++++ +|+||.|||+|||+|+||++
T Consensus 668 ------~~pGTVV~-------~-DFyL~Sh~v~~~qGTprPthY~~~Vi~D~~~~~~~~~~D~lq~lty~Lchlyyn~~~ 733 (771)
T 1u04_A 668 ------MKMYFNLG-------G-AIYLIPHKLKQAKGTPIPIKLAKKRIIKNGKVEKQSITRQDVLDIFILTRLNYGSIS 733 (771)
T ss_dssp ------SCEEEEET-------T-EEEEECSCCSSSCSCCCCEEEEEEEEEETTEEEECCCCHHHHHHHHHHHTCCTTCSS
T ss_pred ------CCCEEEEE-------C-CEEEEECCCCCCCCCCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCC
T ss_conf ------99804996-------8-889983454588888887899978875278878777899999999986550145799
Q ss_pred -CCCCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf -7445615687999999965302766
Q 001489 992 -SVSIVPPAYYAHLAAFRARFYMEPE 1016 (1068)
Q Consensus 992 -sVSip~P~yYA~l~a~Rar~~~~~~ 1016 (1068)
+||+|+||||||++|++.+.++..+
T Consensus 734 ~svrvPAP~~YAhklA~lvgq~~~~~ 759 (771)
T 1u04_A 734 ADMRLPAPVHYAHKFANAIRNEWKIK 759 (771)
T ss_dssp CCCCSCHHHHHHHHHHHHHHTTCCCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 99647812799999999997662457
No 6
>3ho1_A Argonaute; argonaute, protein-DNA-RNA complex, nucleic acid binding Pro RNA complex; 2.60A {Thermus thermophilus} PDB: 3dlb_A* 3dlh_A* 3f73_A* 3hm9_A 3hvr_A 3hxm_A* 3hk2_A 3hjf_A
Probab=1.00 E-value=1 Score=698.18 Aligned_cols=639 Identities=17% Similarity=0.161 Sum_probs=468.2
Q ss_pred CCCEEEEEEEEEE-CC--CCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEECCCEEEECCCCCCCCCE
Q ss_conf 8336972247856-49--98526657897277653012199999999999740149832156167427841778999630
Q 001489 212 TRCIVKANHFFAE-LP--DKDLHQYDVTITPEVTSRGVNRAVMEQLVKLYRESHLGKRLPAYDGRKSLYTAGPLPFLSKE 288 (1068)
Q Consensus 212 ~~v~l~tN~f~i~-~~--~~~iy~YdV~I~pe~~~k~~~r~i~~~l~~~~~~~~~~~~~~vyDG~~~lys~~~Lp~~~~~ 288 (1068)
.++.|.-|-|.++ +. +.+.|.|+|.++|....... ..++..++. + .|. ++--....|+|..+ |. ...
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~--~~~--~~~~~~~~~~~~~~-~~-~~~ 74 (685)
T 3ho1_A 5 GKTEVFLNRFALRPLNPEELRPWRLEVVLDPPPGREEV-YPLLAQVAR---R--AGG--VTVRMGDGLASWSP-PE-VLV 74 (685)
T ss_dssp CCEEEEEEEEEEEECCTTTSSCEEEEEEEESCCCTTTH-HHHHHHHHH---H--TCS--SEEEETTEEEESSC-TT-TSC
T ss_pred CCEEEEEEEEECCCCCHHHCCEEEEEEECCCCCCCCHH-HHHHHHHHH---H--HCC--EEEEECCCEECCCC-CH-HHH
T ss_conf 52058975003454885348505899850799884147-789999998---7--387--47863274000467-05-541
Q ss_pred EEEEEECCCCCCCCCCCCCEEEEEEEEEEEECHHHHHHHHCCCCCCCHHHHHHHH-----HHHHCCCCCCCCCCCCCCCC
Q ss_conf 8999705999999988785899999993540746489875168999937899999-----99980699887346575435
Q 001489 289 FRITLLDDDDGQGGQRREREFKVVIKLAARADLHHLGLFLQGRQADAPQEALQVL-----DIVLRELPTTRYCPVGRSFY 363 (1068)
Q Consensus 289 ~~v~~~~~~~~~~~~~~~~~~~v~i~~~~~~~l~~l~~~l~~~~~~~~~~~lq~L-----niilr~~~~~~~~~~Gr~ff 363 (1068)
.+=.+.. .+....|++.-.-.+.+|...- ..+++|..| +-.|+.. +++..-|.-.+
T Consensus 75 ~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 135 (685)
T 3ho1_A 75 LEGTLAR-------MGQTYAYRLYPKGRRPLDPKDP----------GERSVLSALARRLLQERLRRL--EGVWVEGLAVY 135 (685)
T ss_dssp CEEEEEC-------SSCEEEEEEEEEEECCCCTTSH----------HHHHHHHHHHHHHHHHHHHTC--SSSEEETTEEE
T ss_pred CCCHHCC-------CCCCCCEEEEECCCCCCCCCCH----------HHHHHHHHHHHHHHHHHHHHH--HCEEECCEEEE
T ss_conf 0220002-------3688663653056645788986----------788999999999999998765--33377647898
Q ss_pred CCCCCCCCCCCCCEEEEEECEEEECCCC-CEEEEEEECCEEEEECCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 9999986458997599720011100247-805875405412464476199999998428999999996789999998159
Q 001489 364 SPDLGRRQPLGEGLESWRGFYQSIRPTQ-MGLSLNIDMSSTAFIEPLPVIDFVQQLLNRDVSSRPLSDADRVKIKKALRG 442 (1068)
Q Consensus 364 ~~~~~~~~~lg~Gle~~~G~~~Svr~~~-~~l~LniD~s~~~F~~~~~l~d~i~~~~~~~~~~~~~~~~~~~~i~~~Lkg 442 (1068)
-.. . .-|.|.|+.+|+...|-++. ++++|.||+.+. |+.+.++.+++.+.. . |.
T Consensus 136 ~~~---~-~~~~~~~~~~g~~~~v~~~~~~~~~l~vd~~~r-~~~~~~~~~~l~~~~------------------~-~~- 190 (685)
T 3ho1_A 136 RRE---H-ARGPGWRVLGGAVLDLWVSDSGAFLLEVDPAYR-ILCEMSLEAWLAQGH------------------P-LP- 190 (685)
T ss_dssp EEE---E-EEETTEEEEEEEEEEEEECSSSEEEEEEEEEEE-EEECSCHHHHHHHSC------------------C-CC-
T ss_pred EEC---C-CCCCCEEEECCEEEEEEECCCCCEEEEEEEHEE-ECCHHHHHHHHHHCC------------------C-CC-
T ss_conf 406---8-877743884366999998778867999740301-147644999998179------------------8-32-
Q ss_pred CEEEEEECCCCCCEEEEECCCCCCCCCEEEEECCCCCEEEHHHHHHHHCCCCCCCCCCCEEEECCC----CC-----CCC
Q ss_conf 599993259877339994357899875055416999176299999988197657899846992458----87-----741
Q 001489 443 VRVEVTHRGNMRRKYRISGLTSQTTGELTFPVDESGTLKSVVEYFYETYGFVIQHTQWPCLQVGNQ----QR-----PNY 513 (1068)
Q Consensus 443 l~V~~~~~~~~~r~~~I~~i~~~~a~~~~F~~~~~g~~isV~eYf~~kY~i~L~~p~lP~v~~g~~----~~-----~~y 513 (1068)
..|..+|+ .++|+|.+|+. .+++..|. + + .+|++||+++||.+ +.-++|.|+...+ .+ .+|
T Consensus 191 ~~v~~~y~---~~~~~~~~~~~-~~p~~~~l-~--~-~~s~~~y~~~k~~~--~~~~~~~vv~~~~~~~~~~~i~~~~~~ 260 (685)
T 3ho1_A 191 KRVRNAYD---RRTWELLRLGE-EDPKELPL-P--G-GLSLLDYHASKGRL--QGREGGRVAWVADPKDPRKPIPHLTGL 260 (685)
T ss_dssp SEEEESSS---CCEECCCEEEC-CCTTCC----------CSTTTTTTTSTT--TTSCCCSEEEECSCC---CCEEEETTS
T ss_pred HHHHHHCC---CCEEEEEECCC-CCCHHEEC-C--C-CCCHHHHHHHCCCC--CCCCCCEEEEEECCCCCCCCCEEEEEE
T ss_conf 77764316---62489863366-89332345-7--8-86599997542653--346786599995544578733244256
Q ss_pred CCCCCEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCEEEEEEECCCCCE
Q ss_conf 14543584068533456999999999998419946779999999983259998222322638726522876387089944
Q 001489 514 LPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPHERERDIMQTVHHNAYHEDPYAREFGIKISEKLASVEARILPAPWL 593 (1068)
Q Consensus 514 lP~Elc~i~~gQ~~~~kl~~~q~~~mik~~~~~P~~R~~~I~~~~~~~~~~~~~~l~~fGi~i~~~~~~v~grvL~~P~i 593 (1068)
|.|||| + ++ |++.+.. .++...|.+|.+.+.++++. +++.|||+ +++|+.|+||+||||+|
T Consensus 261 l~p~l~-m-~~------l~~~~~~---~~trlsP~~R~~~l~~~~~~-------i~~~~Gl~-~~~~i~v~gRvLppp~I 321 (685)
T 3ho1_A 261 LVPVLT-L-ED------LHEEEGS---LALSLPWEERRRRTREIASW-------IGRRLGLG-TPEAVRAQAYRLSIPKL 321 (685)
T ss_dssp EEEECC-T-TT------TSSCSSC---CCCCCCHHHHHHHHHHHHHH-------HHHTTCSC-CCEEEEEEEEECCCCCE
T ss_pred ECHHHH-H-HH------HHHHHHH---CCCCCCHHHHHHHHHHHHHH-------HHHHCCCC-CCCCCEEEEEECCHHHH
T ss_conf 322767-8-77------7666640---62567989999999999999-------88853999-89711687788388995
Q ss_pred EECCCCCCCCCCCCCCCEECCCCEEEECCEECEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHH
Q ss_conf 41479984335996750001273353072205159999268866689999999999998842954589992068999905
Q 001489 594 KYHDTGKEKDCLPQVGQWNMMNKKMVNGGTVNHWICINFSRHVQDSIARGFCFELAQMCYISGMAFNPEPVIPPISARPE 673 (1068)
Q Consensus 594 ~y~~~~~~~~~~p~~g~Wn~~~~kf~~~~~i~~W~vv~~~~~~~~~~~~~f~~~l~~~~~~~Gi~i~~~p~~~~~~~~~~ 673 (1068)
+++. . + ...|++.+.+|+.++.+ .|+++++... ...+++|++.|.+.|+.+||.|+. |... ..++
T Consensus 322 -~g~~-~---~---~~~~d~~~~~~~~~~~~-~~ail~l~~~--~~~~~~f~~~L~~va~~~G~~i~~-~~~~---~~~~ 386 (685)
T 3ho1_A 322 -MGRR-A---V---SKPADALRVGFYRAQET-ALALLRLDGA--QGWPEFLRRALLRAFGASGASLRL-HTLH---AHPS 386 (685)
T ss_dssp -ESSS-B---C---SSGGGHHHHCCSSCCCE-EEEEEECSSC--CSCCHHHHHHHHHHHHSSSSCEEE-EECC---CCGG
T ss_pred -CCCC-C---C---CCCHHHCCCCCEECCCC-EEEEEECCCC--HHHHHHHHHHHHHHHHHCCCEECC-CEEE---CCCC
T ss_conf -5899-7---5---78621114753113673-5999962672--678999999999988767937635-5110---4777
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 59999999999998650699985199999508998304455565211347201333002202441779999999998513
Q 001489 674 HVEKVLKTRYHDAMTKLGQGKELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYMANVALKINVKV 753 (1068)
Q Consensus 674 ~~~~~l~~~~~~~~~~~~~~~~~~lvlvilp~~~~~~Y~~IK~~~d~~~GI~TQci~~~~~~k~~~q~~~Ni~lKiN~Kl 753 (1068)
+.. .+...+++..+ .++||||||+|+++.+.|..||++| .++||+||||. +++.+...+++.||+||||+||
T Consensus 387 d~~-~~~~~l~~~~~-----~~~qlvvvIlp~~~~~~y~~IKk~~-~~~GIpTQcV~-~tl~k~~~~ia~NIaLkINaKL 458 (685)
T 3ho1_A 387 QGL-AFREALRKAKE-----EGVQAVLVLTPPMAWEDRNRLKALL-LREGLPSQILN-VPLREEERHRWENALLGLLAKA 458 (685)
T ss_dssp GTH-HHHHHHHHHHH-----TTCCEEEEEESCCCHHHHHHHHHHH-HHTTCCEEEEE-SSCCTTCHHHHHHHHHHHHHHH
T ss_pred CHH-HHHHHHHHHHH-----CCCCEEEEEECCCCCCHHHHHHHHH-HCCCCCCEEEE-CCCCCCCHHHHHHHHHHHHHHH
T ss_conf 369-99999998642-----3998899997799954789999998-63997638996-1225640719999999998873
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCEEEE--C-CCCCCEEEEEEEECCCCCHHHHHHHCCCCCC
Q ss_conf 972210121101477765799919999972189999999982673--1-8985305669997168714203100003688
Q 001489 754 GGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAA--D-WPEVTKYAGLVCAQAHRQELIQDLFKTWQDP 830 (1068)
Q Consensus 754 GG~N~~l~~~~~~~~p~~~~~~tmiiG~DVsHp~~g~~~~pSiaa--d-~~~~~ky~~~~~~Q~~~~E~i~~l~~~~~~~ 830 (1068)
||+||.|+. | ..+|||||+||+|++.. +.+++|+ + .....+| ..+..|.+.++.++++
T Consensus 459 GG~pW~L~~------P---~~~tmiIGiDVsH~~~~--~~~~~aav~~~dg~~~~~-~~~~~Q~~e~l~~~~L------- 519 (685)
T 3ho1_A 459 GLQVVALSG------A---YPAELAVGFDAGGRESF--RFGGAACAVGGDGGHLLW-TLPEAQAGERIPQEVV------- 519 (685)
T ss_dssp TCCCCEECS------C---CSCSEEEEEEEEETTEE--EEEEEEEEECC--CCCEE-ECCCCCCSCCCHHHHH-------
T ss_pred CCEEEEECC------C---CCCEEEEEEEEECCCCC--CCCEEEEEEECCCCEEEE-EEEECCCCCEECHHHH-------
T ss_conf 983578568------9---99869999999738989--612399999788887776-7887267858649999-------
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCC-CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCC
Q ss_conf 76754057999999999999099994499982577-91579999999999999999950999999999999941333332
Q 001489 831 VRGAVSGGMIKELLISFRRATGQKPQRIIFYRDGV-SEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRL 909 (1068)
Q Consensus 831 ~~~~~~~~~i~~~L~~f~~~~~~~P~~IIiyRDGV-SEGQf~~Vl~~Ei~~ik~a~~~~~~~y~P~it~Ivv~KRhhtRf 909 (1068)
..|+.++|..|++.++.+|++|||||||| ||+||. +|++||.++ .+++|||||+|||||||
T Consensus 520 ------~~~l~eaL~~Y~k~ng~lP~RIIIyRDGV~se~E~~--------~I~eAl~~~----~~~~t~IvVqKRh~tRf 581 (685)
T 3ho1_A 520 ------WDLLEETLWAFRRKAGRLPSRVLLLRNGRVPQDEFA--------LALEALARE----GIAYDLVSVRKSGGGRV 581 (685)
T ss_dssp ------HHHHHHHHHHHHHHHSSCCSEEEEEECSSSCSGGGH--------HHHHHHHHT----TCEEEEEEEESSCCCCE
T ss_pred ------HHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHH--------HHHHHHHHC----CCCEEEEEEEECCCCEE
T ss_conf ------999999999999983899848999958989989999--------999999861----99879999991687137
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCEEECCC--CCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 3358999787778888866203115656788573662125--67656446863799834998898889999999530565
Q 001489 910 FANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSH--AGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYA 987 (1068)
Q Consensus 910 f~~~~~~~~~~~~~~N~~pGTVVD~~It~p~~~DFyL~Sh--~~~qGTarPthY~VL~De~~~~~d~Lq~LT~~LCy~y~ 987 (1068)
|+.+ .++.+||+|+ .++||||++| .++|||+||+||+ +|++++++|+||.|||+|||+|+
T Consensus 582 F~~n----------~pp~~Gt~v~------~e~d~flL~s~gsv~qGT~rPthy~--~D~~~~s~D~LQ~ltY~Lchmy~ 643 (685)
T 3ho1_A 582 YPVQ----------GRLADGLYVP------LEDKTFLLLTVHRDFRGTPRPLKLV--HEAGDTPLEALAHQIFHLTRLYP 643 (685)
T ss_dssp EESS----------SCCCSSEEEE------CSTTEEEEECCCCCSSSCCCCEEEE--EEEECSCHHHHHHHHHHGGGCCS
T ss_pred ECCC----------CCCCCEEEEE------CCCCEEEEEECCCCCCCCCCEEEEE--ECCCCCCHHHHHHHHHHHHHHHC
T ss_conf 4689----------8998759980------7897899996688876678619999--89899899999999999777511
Q ss_pred CCC-CCCCCCCHHHHHHHHH-HHHHH
Q ss_conf 247-7744561568799999-99653
Q 001489 988 RCT-RSVSIVPPAYYAHLAA-FRARF 1011 (1068)
Q Consensus 988 r~t-~sVSip~P~yYA~l~a-~Rar~ 1011 (1068)
||| ++||+|+||||||++| .|||.
T Consensus 644 nst~~svsvPAP~~YAhklAk~~~r~ 669 (685)
T 3ho1_A 644 ASGFAFPRLPAPLHLADRLVKEVGRL 669 (685)
T ss_dssp SCSSSCCSSCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 68999998675789999999999873
No 7
>2yha_A Post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; HET: GOL; 1.85A {Neurospora crassa} PDB: 2xdy_A
Probab=1.00 E-value=1 Score=695.78 Aligned_cols=360 Identities=30% Similarity=0.492 Sum_probs=302.0
Q ss_pred CCCCEEEE-CCEECEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 12733530-72205159999268866689999999999998842954589992-06899990559999999999998650
Q 001489 613 MMNKKMVN-GGTVNHWICINFSRHVQDSIARGFCFELAQMCYISGMAFNPEPV-IPPISARPEHVEKVLKTRYHDAMTKL 690 (1068)
Q Consensus 613 ~~~~kf~~-~~~i~~W~vv~~~~~~~~~~~~~f~~~l~~~~~~~Gi~i~~~p~-~~~~~~~~~~~~~~l~~~~~~~~~~~ 690 (1068)
|++++|++ +++|++|++++|....+.+.++.|++.|.+.|+.+||.+..+.. +... . .++.+..+ .++++.+.
T Consensus 2 ~~~~~f~~p~~~l~~W~vv~~~~~~~~~~~~~f~~~l~~~~~~~G~~i~~p~~~~~~~-~-~~~~~~~~--~~~~~~~~- 76 (388)
T 2yha_A 2 AMAVKVARPCRKIEKWTYLELKGSKANEGVPQAMTAFAEFLNRTGIPINPRFSPGMSM-S-VPGSEKEF--FAKVKELM- 76 (388)
T ss_dssp ---CCCSBCCSCBCSEEEEEEECSSCCCCHHHHHHHHHHHHHHTTCCBCSCCCCCEEE-E-CCSSHHHH--HHHHHHHH-
T ss_pred CCCCEECCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEECCCCCCCEEC-C-CCCHHHHH--HHHHHHCC-
T ss_conf 9888851699727789999902777879999999999999987697747998754103-7-78638785--89875045-
Q ss_pred CCCCCCEEEEEEEECCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCHH--HHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 69998519999950899830445556521134720133300220244177--9999999998513972210121101477
Q 001489 691 GQGKELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQ--YMANVALKINVKVGGRNTVLVDAISRRI 768 (1068)
Q Consensus 691 ~~~~~~~lvlvilp~~~~~~Y~~IK~~~d~~~GI~TQci~~~~~~k~~~q--~~~Ni~lKiN~KlGG~N~~l~~~~~~~~ 768 (1068)
.++||||||||+++.++|..||++||+++||+||||+.+++.|.++| |++||+||||+||||+||.|+++ +
T Consensus 77 ---~~~~lvl~ilp~~~~~~Y~~iK~~~~~~~GI~TQcv~~~~~~k~~~q~s~~~NI~lKiN~KlGG~n~~l~~~----~ 149 (388)
T 2yha_A 77 ---SSHQFVVVLLPRKDVAIYNMVKRAADITFGVHTVCCVAEKFLSTKGQLGYFANVGLKVNLKFGGTNHNIKTP----I 149 (388)
T ss_dssp ---HTCSEEEEEESSSCHHHHHHHHHHHHTTTCCEEEEEEHHHHHCSTTHHHHHHHHHHHHHHHTTCBCCCCCSC----C
T ss_pred ---CCCEEEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEHHHHCCCCCHHHHHHHHHHHHHHHHCCCCEECCCC----C
T ss_conf ---898299999789983489999998710579750898345605767489999999999999718933122566----5
Q ss_pred CCCCCCCEEEEEEEECCCC---CC--CCCCCEEEE-----CCCCCCEEEEEEEECC-CCCHHHHHHHCCCCCCCCCCCHH
Q ss_conf 7657999199999721899---99--999982673-----1898530566999716-87142031000036887675405
Q 001489 769 PLVSDRPTIIFGADVTHPH---PG--EDSSPSIAA-----DWPEVTKYAGLVCAQA-HRQELIQDLFKTWQDPVRGAVSG 837 (1068)
Q Consensus 769 p~~~~~~tmiiG~DVsHp~---~g--~~~~pSiaa-----d~~~~~ky~~~~~~Q~-~~~E~i~~l~~~~~~~~~~~~~~ 837 (1068)
|++.+.+|||||+||+||+ +| ....||||| | .+.++|.+.+++|. +++|+|++| +
T Consensus 150 ~~~~~~~tmiiG~DV~H~~~~~~g~~~~~~pSiaavVaS~d-~~~~~y~~~~~~Q~~~~~E~i~~l-------------~ 215 (388)
T 2yha_A 150 PLLAKGKTMVVGYDVTHPTNLAAGQSPASAPSIVGLVSTID-QHLGQWPAMVWNNPHGQESMTEQF-------------T 215 (388)
T ss_dssp HHHHTSCEEEEEEEEECSCCCSSSSCCTTSCEEEEEEECCS-TTCCCCCEEEEEETTTHHHHHHHH-------------H
T ss_pred CCCCCCCEEEEEEEEECCCCCCCCCCCCCCCEEEEEEEECC-CCCCEEEEEEEECCCCCCCHHHHH-------------H
T ss_conf 54577877999877751565677776789987999877759-997779789998688862579999-------------9
Q ss_pred HHHHHHHHHHHH---HCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCEEEEEEEECCCCCCCCCC
Q ss_conf 799999999999---9099994499982577915799999999999999999509999-999999999413333323358
Q 001489 838 GMIKELLISFRR---ATGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNY-QPPVTFVVVQKRHHTRLFANN 913 (1068)
Q Consensus 838 ~~i~~~L~~f~~---~~~~~P~~IIiyRDGVSEGQf~~Vl~~Ei~~ik~a~~~~~~~y-~P~it~Ivv~KRhhtRff~~~ 913 (1068)
+|++++|+.|++ +++.+|++|||||||||||||.+|+++|+++|++||.+++.+| +|+||||||+||
T Consensus 216 ~~~~~~L~~~~~~~~~~~~~P~rIiiyRDGVseGQf~~V~~~El~~i~~a~~~~~~~~~~P~it~Ivv~Kr--------- 286 (388)
T 2yha_A 216 DKFKTRLELWRSNPANNRSLPENILIFRDGVSEGQFQMVIKDELPLVRAACKLVYPAGKLPRITLIVSVKG--------- 286 (388)
T ss_dssp HHHHHHHHHHHHSGGGTTCCCSEEEEEEESCCGGGHHHHHHHTHHHHHHHHHHHSCTTCCCEEEEEEEC-----------
T ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCC---------
T ss_conf 99999999998756543789752899946867257999999999999999998514467986799996466---------
Q ss_pred CCCCCCCCCCCCCCCCEEECCCCCCCCCCCEEECCCCCCCCCCCCCEEEEEECCC------CCCHHHHHHHHHHHHCCCC
Q ss_conf 9997877788888662031156567885736621256765644686379983499------8898889999999530565
Q 001489 914 HHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDEN------KFTADGLQSLTNNLCYTYA 987 (1068)
Q Consensus 914 ~~~~~~~~~~~N~~pGTVVD~~It~p~~~DFyL~Sh~~~qGTarPthY~VL~De~------~~~~d~Lq~LT~~LCy~y~ 987 (1068)
+|||||+||+||+ ++++|+||+|||+|||+|+
T Consensus 287 ------------------------------------------arPthY~Vl~De~f~~~~~~~~~d~lq~lty~Lc~~y~ 324 (388)
T 2yha_A 287 ------------------------------------------SGSAHYTVLVDEIFRADYGNKAADTLEQLTHDMCYLFG 324 (388)
T ss_dssp ----------------------------------------------CEEEEEESSHHHHHGGGHHHHHHHHHHHHHHC--
T ss_pred ------------------------------------------CCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf ------------------------------------------68826999827864334579999999999999977753
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 2477744561568799999996530276668--99986557778889888877766789998877899900111023680
Q 001489 988 RCTRSVSIVPPAYYAHLAAFRARFYMEPETS--DSGSMTSGTIGRGGMGGGVGARSTRGPGVGAAVRPLPALKENVKRVM 1065 (1068)
Q Consensus 988 r~t~sVSip~P~yYA~l~a~Rar~~~~~~~~--d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vh~~~~~~M 1065 (1068)
|||++||||+|+||||++|+|||.|+.+..+ +++|+.++++ ..+...++++|++|+++|
T Consensus 325 r~t~sVsipaP~yYAh~~a~R~r~~l~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~l~~~m 385 (388)
T 2yha_A 325 RATKAVSICPPAYYADLVCDRARIHQKELFDALDENDSVKTDD-------------------FARWGNSGAVHPNLRNSM 385 (388)
T ss_dssp --------CHHHHHHHHHHHHHHHHCHHHHHHHTTCSCCCHHH-------------------HHHHHHHTCCCGGGTTSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC-------------------CCCCCCCCCCCHHHCCCC
T ss_conf 3258877575899999999999998554126777666667776-------------------433223466597763784
Q ss_pred EEC
Q ss_conf 419
Q 001489 1066 FYC 1068 (1068)
Q Consensus 1066 ~y~ 1068 (1068)
|||
T Consensus 386 fyl 388 (388)
T 2yha_A 386 YYI 388 (388)
T ss_dssp TTC
T ss_pred EEC
T ss_conf 369
No 8
>2w42_A PIWI, putative uncharacterized protein; RNAI, RISC, argonaute, PIWI domain, protein/DNA complex; 1.90A {Archaeoglobus fulgidus} PDB: 1ytu_A 2bgg_A 1w9h_A
Probab=1.00 E-value=1 Score=467.24 Aligned_cols=360 Identities=14% Similarity=0.047 Sum_probs=258.3
Q ss_pred ECCCCCEEEC--CCCCCC---CCCCCCCCEECCCCEEEECCEE--CEEEEEEECCCCCHHHHHHHHHHHHHHHH---HCC
Q ss_conf 7089944414--799843---3599675000127335307220--51599992688666899999999999988---429
Q 001489 587 ILPAPWLKYH--DTGKEK---DCLPQVGQWNMMNKKMVNGGTV--NHWICINFSRHVQDSIARGFCFELAQMCY---ISG 656 (1068)
Q Consensus 587 vL~~P~i~y~--~~~~~~---~~~p~~g~Wn~~~~kf~~~~~i--~~W~vv~~~~~~~~~~~~~f~~~l~~~~~---~~G 656 (1068)
-|..|.+.|+ ++.+.. ..+|..| +++...+....+ .+|++|+-.+.. + |++.|.+.+. ..+
T Consensus 5 ~~~ep~~~~~~~~~~~~~~~~~~~~~~g---l~~~gpy~~~~~~~~~w~vI~~~~~~--~----~l~~l~~~~~~~~g~~ 75 (427)
T 2w42_A 5 KIVENGLTYRIGNGASVPISNTGELIKG---LRNYGPYEVPSLKYNQIALIHNNQFS--S----LINQLKSQISSKIDEV 75 (427)
T ss_dssp ------CEEECGGGCEEESSCHHHHHHH---HHHHCCSBCCCCSSSEEEEEESCTTC--H----HHHHHHHHHHHHHHHT
T ss_pred CCCCCCCEEECCCCCCCCCCCCCCHHHH---HHHCCCCCCCCCCCCEEEEEECCCCH--H----HHHHHHHHHHHCCCCC
T ss_conf 4478753441247973444456787899---98669974677889889999773308--9----9999987533128984
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEE--------ECCCCCHHHHHHHHHHCCCCCEEEE
Q ss_conf 54589992068999905599999999999986506999851999995--------0899830445556521134720133
Q 001489 657 MAFNPEPVIPPISARPEHVEKVLKTRYHDAMTKLGQGKELDLLIVIL--------PDNNGSLYGDLKRICETDLGLVSQC 728 (1068)
Q Consensus 657 i~i~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~lvlvil--------p~~~~~~Y~~IK~~~d~~~GI~TQc 728 (1068)
+.+.. +. .+.+.+.+.+++... .+++++|||+ |+++.. |-.+|+ ++++.||+|||
T Consensus 76 f~~~~-~~-----~~~~~y~~~i~~~l~---------~~~~lvlvilp~~~~~~~~~~~~~-~y~~K~-~~~~~gvptQ~ 138 (427)
T 2w42_A 76 WHIHN-IN-----ISEFIYDSPHFDSIK---------SQVDNAIDTGVDGIMLVLPEYNTP-LYYKLK-SYLINSIPSQF 138 (427)
T ss_dssp TCCCS-CE-----EEEEECSSSSHHHHH---------HHHHHHHHHCCSEEEEEESSCCHH-HHHHHH-HHHHTTSCEEE
T ss_pred EEECC-CC-----CCHHHHHHHHHHHHC---------CCCCEEEEEEECCCCCCCCCCCCC-HHHHHH-HHHCCCCCCEE
T ss_conf 05357-76-----780789999999743---------799799999976010458987750-599999-98679967589
Q ss_pred EECCCCCCCCHH-HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCEEEE--CCCCCCE
Q ss_conf 300220244177-9999999998513972210121101477765799919999972189999999982673--1898530
Q 001489 729 CLTKHVFKMSKQ-YMANVALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAA--DWPEVTK 805 (1068)
Q Consensus 729 i~~~~~~k~~~q-~~~Ni~lKiN~KlGG~N~~l~~~~~~~~p~~~~~~tmiiG~DVsHp~~g~~~~pSiaa--d~~~~~k 805 (1068)
|..+|+.+.+.+ ++.||++|||+||||+||.|+.. .| ..+|||||+||+|++++ ...++|. | .+...
T Consensus 139 I~~~tl~~~~~~~~~~nIalqi~~KlGG~pW~l~~~----~~---~~~~miiGidv~h~~~~--~v~g~a~v~~-~~g~~ 208 (427)
T 2w42_A 139 MRYDILSNRNLTFYVDNLLVQFVSKLGGKPWILNVD----PE---KGSDIIIGTGATRIDNV--NLFCFAMVFK-KDGTM 208 (427)
T ss_dssp EEGGGCCTTTHHHHHHHHHHHHHHHTTCBCCEECCC----TT---SSCSEEEEEEEEESSSS--EEEEEEEEEC-TTSCE
T ss_pred EEHHHCCCCCCHHHHHHHHHHHHHHHCCCCEECCCC----CC---CCCEEEEEEEEEECCCC--CEEEEEEEEC-CCCCE
T ss_conf 873354556505699999999978738966064567----89---89869997899876999--5799999983-89978
Q ss_pred EEEEEEECCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH-HCCCCCC--EEEEEECCCCHHHHHHHHHHHHHHHH
Q ss_conf 56699971687142031000036887675405799999999999-9099994--49998257791579999999999999
Q 001489 806 YAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISFRR-ATGQKPQ--RIIFYRDGVSEGQFYQVLLYELDAIR 882 (1068)
Q Consensus 806 y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~~~i~~~L~~f~~-~~~~~P~--~IIiyRDGVSEGQf~~Vl~~Ei~~ik 882 (1068)
+...+..|.+++|++++| ..+++++|+.|++ .++.+|+ ||||| |||.+|+++|+++|+
T Consensus 209 ~~~~~~~~~~~~E~~~~l-------------~~~l~~aL~~y~~~~~~~~P~~~rIii~------gq~~~v~~~Ei~~i~ 269 (427)
T 2w42_A 209 LWNEISPIVTSSEYLTYL-------------KSTIKKVVYGFKKSNPDWDVEKLTLHVS------GKRPKMKDGETKILK 269 (427)
T ss_dssp EEEEECCCEEGGGHHHHH-------------HHHHHHHHHHHHHHCTTCCCSEEEEEEE------SSCCSCHHHHHHHHH
T ss_pred EEEEEEECCCHHHHHHHH-------------HHHHHHHHHHHHHHHCCCCCCCEEEEEE------EECCCCCHHHHHHHH
T ss_conf 999888427706799999-------------9999999999998742789982599999------214111699999999
Q ss_pred HHHHHHCC----CCCCCEEEEEEEECCC-CCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCEEECCCCCCCC---
Q ss_conf 99995099----9999999999941333-332335899978777888886620311565678857366212567656---
Q 001489 883 KACASLEP----NYQPPVTFVVVQKRHH-TRLFANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQG--- 954 (1068)
Q Consensus 883 ~a~~~~~~----~y~P~it~Ivv~KRhh-tRff~~~~~~~~~~~~~~N~~pGTVVD~~It~p~~~DFyL~Sh~~~qG--- 954 (1068)
+||.++.. +|+|+||||+|+|||| +|||..+ ..+||+||||||.+ ++|||++|.+.|+
T Consensus 270 ~a~~~~~~~~~~~~~~~l~~IvV~Kr~~~~r~f~~~--------~~~nP~~GTvVd~~------~~~~l~~~~g~q~~~~ 335 (427)
T 2w42_A 270 ETVEELKKQEMVSRDVKYAILHLNETHPFWVMGDPN--------NRFHPYEGTKVKLS------SKRYLLTLLQPYLKRN 335 (427)
T ss_dssp HHHHHHHHTTSSCTTCEEEEEEEEECCCEEEEC----------------CCSEEEESS------SSEEEEEEEC------
T ss_pred HHHHHHCCCCCCCCCCCEEEEEEECCCCCEEEECCC--------CCCCCCCCEEEECC------CCEEEEEEEEEECCCC
T ss_conf 999871544345788877999998166654665478--------88998996499758------9808999974523656
Q ss_pred ---CCC---CCEEEEEEC----CCCC-CHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf ---446---863799834----9988-988899999995305652477744561568799999996530276
Q 001489 955 ---TSR---PAHYHVLWD----ENKF-TADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEP 1015 (1068)
Q Consensus 955 ---Tar---PthY~VL~D----e~~~-~~d~Lq~LT~~LCy~y~r~t~sVSip~P~yYA~l~a~Rar~~~~~ 1015 (1068)
+.+ ||||+|++| |+.+ ++|+||++||+|||+|+|||++||+|+||||||++|+|+.....-
T Consensus 336 ~~~~~~~~~Pt~y~vi~d~~~~~~~~~~~d~lq~lty~L~~~nw~~t~~v~vPap~~YAhklA~l~~~~~~~ 407 (427)
T 2w42_A 336 GLEMVTPIKPLSVEIVSDNWTSEEYYHNVHEILDEIYYLSKMNWRGFRSRNLPVTVNYPKLVAGIIANVNRY 407 (427)
T ss_dssp ---CEEEEEEEEEEEEEECCCTTTHHHHHHHHHHHHHHHHTCCTTSSSCCSSCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 656535889879999966876844598999999999985476568888898376507699999998656425
No 9
>4g0x_A Protein argonaute 1; MID domain, small RNA 5' nucleotide recognition, gene regula; 1.35A {Arabidopsis thaliana} PDB: 4g0q_A* 4g0p_A 4g0y_A* 4g0z_A* 3vna_A 3vnb_A
Probab=1.00 E-value=1 Score=226.99 Aligned_cols=146 Identities=88% Similarity=1.424 Sum_probs=129.6
Q ss_pred CCEEEECCEECEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 73353072205159999268866689999999999998842954589992068999905599999999999986506999
Q 001489 615 NKKMVNGGTVNHWICINFSRHVQDSIARGFCFELAQMCYISGMAFNPEPVIPPISARPEHVEKVLKTRYHDAMTKLGQGK 694 (1068)
Q Consensus 615 ~~kf~~~~~i~~W~vv~~~~~~~~~~~~~f~~~l~~~~~~~Gi~i~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 694 (1068)
+++|++|++|++|++|+|++..+++.++.|++.|.+.|+.+||.+.++|.+.....+++++++.|+.+++++.+++..+.
T Consensus 2 ~kkf~~~~~l~~Wavv~~~~~~~~~~~~~F~~~L~~~~~~~Gm~i~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 81 (147)
T 4g0x_A 2 NKKMINGGTVNNWICINFSRQVQDNLARTFCQELAQMCYVSGMAFNPEPVLPPVSARPEQVEKVLKTRYHDATSKLSQGK 81 (147)
T ss_dssp CCCEEECCEECSEEEEECCTTCCHHHHHHHHHHHHHHHHHTTCEECSSCSSCCEECCGGGHHHHHHHHHHHHHHTSSTTC
T ss_pred CCEEECCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 88770277467489998468776799999999999999984997799986521478817799999999999986404489
Q ss_pred CCEEEEEEEECCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 851999995089983044555652113472013330022024417799999999985139722101
Q 001489 695 ELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYMANVALKINVKVGGRNTVL 760 (1068)
Q Consensus 695 ~~~lvlvilp~~~~~~Y~~IK~~~d~~~GI~TQci~~~~~~k~~~q~~~Ni~lKiN~KlGG~N~~l 760 (1068)
++||||||||+++.++|+.||++||+++||+||||+.+++.|.++||++||+||||+||||+||.|
T Consensus 82 ~~~lv~~il~~~~~~~Y~~iK~~~~~~~gi~tqcv~~~~~~k~~~q~~~nv~lKiN~KlGG~N~~l 147 (147)
T 4g0x_A 82 EIDLLIVILPDNNGSLYGDLKRICETELGIVSQCCLTKHVFKMSKQYMANVALKINVKVGGRNTVL 147 (147)
T ss_dssp CCCEEEEEECSSCTTHHHHHHHHCCCCCCCCEEEEEHHHHHHCCHHHHHHHHHHHHHHTTCEECCC
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEECHHHHCCCCHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 971999996899940789999987327891658854455167778899999999977657545639
No 10
>1vyn_A Argonaute2; nucleic acid binding, RNA interference; NMR {Drosophila melanogaster} SCOP: b.34.14.1
Probab=1.00 E-value=1 Score=222.59 Aligned_cols=138 Identities=25% Similarity=0.498 Sum_probs=121.2
Q ss_pred ECCCCHHHHHHHHHCCC-CCCCCCCHHHHHHHHHHHCCCEEEEEECC---CCCCEEEEECCCCCCCCCEEEEECCCCCEE
Q ss_conf 44761999999984289-99999996789999998159599993259---877339994357899875055416999176
Q 001489 406 IEPLPVIDFVQQLLNRD-VSSRPLSDADRVKIKKALRGVRVEVTHRG---NMRRKYRISGLTSQTTGELTFPVDESGTLK 481 (1068)
Q Consensus 406 ~~~~~l~d~i~~~~~~~-~~~~~~~~~~~~~i~~~Lkgl~V~~~~~~---~~~r~~~I~~i~~~~a~~~~F~~~~~g~~i 481 (1068)
++++||+||++++++.. ...+...+.++.+++++|+|++|.++|.+ ..+|+|+|.+|++.++++.+|+++ |.++
T Consensus 2 ~~~~~vidfl~~~~~~~~~~~~~~~~~~r~~~~k~LkGl~V~~~~~~~~~~~~r~yrI~~i~~~~a~~~~F~~~--g~~i 79 (143)
T 1vyn_A 2 AMAMPMIEYLERFSLKAKINNTTNLDYSRRFLEPFLRGINVVYTPPQSFQSAPRVYRVNGLSRAPASSETFEHD--GKKV 79 (143)
T ss_dssp --CEEHHHHHHHHTTSSCCSSSSCHHHHHHHSHHHHTTEEEEECCCTTSCCCCEEEEEEEEEEEETTTCEEESS--SCEE
T ss_pred CCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEEEECCCCCCCCEEEECC--CCEE
T ss_conf 88634999999986216666557566899999997498399995687766787359981056899521289749--9779
Q ss_pred EHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 29999998819765789984699245887741145435840685334569999999999984199
Q 001489 482 SVVEYFYETYGFVIQHTQWPCLQVGNQQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQR 546 (1068)
Q Consensus 482 sV~eYf~~kY~i~L~~p~lP~v~~g~~~~~~ylP~Elc~i~~gQ~~~~kl~~~q~~~mik~~~~~ 546 (1068)
||+|||+++ |++|+||+||||++|++.+++|||||||.|++||+++++|+++|+++||++||++
T Consensus 80 sv~~Yf~~~-~~~l~~p~lP~l~~g~~~k~~ylP~ElC~i~~gQ~~~~kl~~~q~~~mik~a~~~ 143 (143)
T 1vyn_A 80 TIASYFHSR-NYPLKFPQLHCLNVGSSIKSILLPIELCSIEEGQALNRKDGATQVANMIKYAATS 143 (143)
T ss_dssp EHHHHHHHT-TCCCSSTTSEEEEEECSSSEEEEEGGGEEECC-----------------------
T ss_pred EHHHHHHHC-CCCCCCCCCCEEEECCCCCCEEECCEEEECCCCCCCCCCCCHHHHHHHHHHHHCC
T ss_conf 899999872-9977899987587437889758511858805895224318989999999998359
Done!