BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001490
(1068 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 72.8 bits (177), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 131/554 (23%), Positives = 231/554 (41%), Gaps = 95/554 (17%)
Query: 374 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLE-IDAHVGNVNDLAFSAPCKQI 432
SV V +SPDG + A V+L+ +G Q L+ + H +V +AFS P Q
Sbjct: 59 SVWGVAFSPDGQTIASASDDKTVKLWNRNG-----QLLQTLTGHSSSVRGVAFS-PDGQ- 111
Query: 433 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLC--PHAKENIHFIFSISVDGKIKAW 490
++ + DDKT+K+W+ G + GH + V+ + P + I S S D +K W
Sbjct: 112 TIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQT----IASASDDKTVKLW 166
Query: 491 LYDS--LGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ 548
+ L + + G +A+S +G+ + S K + WN G + +T
Sbjct: 167 NRNGQLLQTLTGHSSSVWG---VAFSPDGQTIASASDDKT----VKLWNR-NGQLLQTLT 218
Query: 549 GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG-------LPEN 601
G +SV V F I +A DD +K+W+ N QLL T+ P+
Sbjct: 219 G---HSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVNGVAFRPDG 274
Query: 602 PRIC----------FNKNGTLLAVIANENR--IKILETPESNSVDAAGVLSDN----LRK 645
I +N+NG LL + + + +P+ ++ +A SD+ L
Sbjct: 275 QTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASA---SDDKTVKLWN 331
Query: 646 LSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLP 705
+ + T+TG + V+ + D + I+ +++K+ L+ R + LL
Sbjct: 332 RNGQHLQTLTGHSSSVWGVAFSPDGQT-----IASASDDKTV---KLWNRNGQ---LLQT 380
Query: 706 SKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGP 765
++ + + ++ GQ I + + + +W R+G
Sbjct: 381 LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-----------------------RNG- 416
Query: 766 QFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSL 825
Q + T S+S V A S +D + SAS + + T+ S + +
Sbjct: 417 QLLQTLTGHSSS---VWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGV 473
Query: 826 AFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQ 885
AF+P D IA DD T+ ++N R+ +++ L GHS V G+ FS + S+ D
Sbjct: 474 AFSP-DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT 531
Query: 886 IFVWDVDGWGIQTC 899
+ +W+ +G +QT
Sbjct: 532 VKLWNRNGQLLQTL 545
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 70/257 (27%), Positives = 117/257 (45%), Gaps = 33/257 (12%)
Query: 374 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLE-IDAHVGNVNDLAFSAPCKQI 432
SV V +SPDG + A V+L+ +G Q L+ + H +V +AFS P Q
Sbjct: 18 SVRGVAFSPDGQTIASASDDKTVKLWNRNG-----QLLQTLTGHSSSVWGVAFS-PDGQ- 70
Query: 433 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLC--PHAKENIHFIFSISVDGKIKAW 490
++ + DDKT+K+W+ G + GH + V + P + I S S D +K W
Sbjct: 71 TIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQT----IASASDDKTVKLW 125
Query: 491 LYDS--LGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ 548
+ L + + G +A+S +G+ + S K + WN G + +T
Sbjct: 126 NRNGQLLQTLTGHSSSVWG---VAFSPDGQTIASASDDKT----VKLWNR-NGQLLQTLT 177
Query: 549 GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR-ICFN 607
G +SV V F I +A DD +K+W+ N QLL T+ G + R + F+
Sbjct: 178 G---HSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTLT---GHSSSVRGVAFS 230
Query: 608 KNGTLLAVIANENRIKI 624
+G +A +++ +K+
Sbjct: 231 PDGQTIASASDDKTVKL 247
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 62/227 (27%), Positives = 103/227 (45%), Gaps = 27/227 (11%)
Query: 402 HGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG 461
H G R +LE AH +V +AFS P Q ++ + DDKT+K+W+ G + GH
Sbjct: 3 HMGVKERNRLE--AHSSSVRGVAFS-PDGQ-TIASASDDKTVKLWNR-NGQLLQTLTGHS 57
Query: 462 APVYSLC--PHAKENIHFIFSISVDGKIKAWLYDS--LGARVDYDAPGLGCTRMAYSANG 517
+ V+ + P + I S S D +K W + L + + G +A+S +G
Sbjct: 58 SSVWGVAFSPDGQT----IASASDDKTVKLWNRNGQLLQTLTGHSSSVRG---VAFSPDG 110
Query: 518 RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV 577
+ + S K + WN G + +T G +SV V F I +A DD
Sbjct: 111 QTIASASDDKT----VKLWNR-NGQLLQTLTG---HSSSVWGVAFSPDGQTIASASDDKT 162
Query: 578 IKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI 624
+K+W+ N QLL T+ G + F+ +G +A +++ +K+
Sbjct: 163 VKLWNRNG-QLLQTLT--GHSSSVWGVAFSPDGQTIASASDDKTVKL 206
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 812 ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFS 871
+ T+ S + +AF+P D IA DD T+ ++N R+ +++ L GHS V G+ FS
Sbjct: 50 LQTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFS 107
Query: 872 DALNILVSSGGDAQIFVWDVDGWGIQTC 899
+ S+ D + +W+ +G +QT
Sbjct: 108 PDGQTIASASDDKTVKLWNRNGQLLQTL 135
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 819 SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILV 878
S + +AF+P D IA DD T+ ++N R+ +++ L GHS V G+ FS +
Sbjct: 16 SSSVRGVAFSP-DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIA 73
Query: 879 SSGGDAQIFVWDVDGWGIQTC 899
S+ D + +W+ +G +QT
Sbjct: 74 SASDDKTVKLWNRNGQLLQTL 94
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 63.2 bits (152), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 103/218 (47%), Gaps = 13/218 (5%)
Query: 374 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 433
+V+ V +SP+G L + + +++++ G D + + I H ++D+A+S+ +
Sbjct: 47 AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 102
Query: 434 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 493
++ DDKT+K+WD +G + +GH Y C + + I S S D ++ W
Sbjct: 103 -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 159
Query: 494 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 553
+ A + + ++ +G + S +S +G + W+ + G +T +
Sbjct: 160 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 213
Query: 554 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 591
+ VS V F ILAA D+ +K+WD +K + L T
Sbjct: 214 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 251
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/241 (23%), Positives = 111/241 (46%), Gaps = 20/241 (8%)
Query: 748 TEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIV 806
+ + T+ P +P + +F + T +AV S N +L S+S +I ++
Sbjct: 20 SSSATQSKPTPVKPNYALKFTLAGHT-----KAVSSVKFSPNGEWLASSSADKLIKIWGA 74
Query: 807 MTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVT 866
K TI + +A++ D+N++ DD T+ I++ S + + L+GHS V
Sbjct: 75 YDGKFEKTISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF 133
Query: 867 GLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTR 926
F+ N++VS D + +WDV +T + L+T + + + + F++D +
Sbjct: 134 CCNFNPQSNLIVSGSFDESVRIWDV-----KTGKCLKT---LPAHSDPVSAVHFNRDGS- 184
Query: 927 FLLVHETH---LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 983
L+V ++ I++ CLK + P+S FS + + + + +D TL + +
Sbjct: 185 -LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 243
Query: 984 S 984
S
Sbjct: 244 S 244
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 76/187 (40%), Gaps = 27/187 (14%)
Query: 813 LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSD 872
T+ + +S+ F+P + +A D I I+ A + + GH ++ + +S
Sbjct: 39 FTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 97
Query: 873 ALNILVSSGGDAQIFVWDVD-GWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV- 930
N+LVS+ D + +WDV G ++T + P Q+ ++
Sbjct: 98 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP----------QSNLIVSG 147
Query: 931 -HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQ 989
+ + I++ + CLK P S P+S F+ D ++ +S DG
Sbjct: 148 SFDESVRIWDVKTGKCLKT-LPAHSDPVSAVHFNRDGSLIVSSSYDGL------------ 194
Query: 990 CRILSTA 996
CRI TA
Sbjct: 195 CRIWDTA 201
Score = 37.7 bits (86), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 49/221 (22%), Positives = 87/221 (39%), Gaps = 41/221 (18%)
Query: 304 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKL--------------FIR 349
+TL S+ +F+P Q L++ G+ +WDV +G+ L F R
Sbjct: 123 KTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 181
Query: 350 N------------FKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQ 397
+ ++WD + L L+ D V+ V +SP+G + A + ++
Sbjct: 182 DGSLIVSSSYDGLCRIWDTASGQCL--KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLK 239
Query: 398 LYAYHGGSDARQQLEIDAHVGNVND-----LAFSAPCKQISVITCGDDKTIKVWDAVTGS 452
L+ Y G + + G+ N+ FS + +++ +D + +W+ T
Sbjct: 240 LWDYSKGK------CLKTYTGHKNEKYCIFANFSVTGGKW-IVSGSEDNLVYIWNLQTKE 292
Query: 453 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 493
+GH V S H ENI ++ D IK W D
Sbjct: 293 IVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 333
Score = 36.6 bits (83), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 509 TRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQ 568
+ + +S NG L S + + W +G ++T G +L +S V + + +
Sbjct: 49 SSVKFSPNGEWL----ASSSADKLIKIWGAYDGKFEKTISGHKL---GISDVAWSSDSNL 101
Query: 569 ILAAGDDHVIKIWDMNKVQLLTTI 592
+++A DD +KIWD++ + L T+
Sbjct: 102 LVSASDDKTLKIWDVSSGKCLKTL 125
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 835 IAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSG--GDAQIFVWDVD 892
I G +D+ + I+N ++ E++ KL+GH+ V NI+ S+ D I +W D
Sbjct: 274 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 333
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 63.2 bits (152), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 103/218 (47%), Gaps = 13/218 (5%)
Query: 374 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 433
+V+ V +SP+G L + + +++++ G D + + I H ++D+A+S+ +
Sbjct: 49 AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 104
Query: 434 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 493
++ DDKT+K+WD +G + +GH Y C + + I S S D ++ W
Sbjct: 105 -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 161
Query: 494 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 553
+ A + + ++ +G + S +S +G + W+ + G +T +
Sbjct: 162 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 215
Query: 554 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 591
+ VS V F ILAA D+ +K+WD +K + L T
Sbjct: 216 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 253
Score = 56.2 bits (134), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 56/241 (23%), Positives = 111/241 (46%), Gaps = 20/241 (8%)
Query: 748 TEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIV 806
+ + T+ P +P + +F + T +AV S N +L S+S +I ++
Sbjct: 22 SSSATQSKPTPVKPNYALKFTLAGHT-----KAVSSVKFSPNGEWLASSSADKLIKIWGA 76
Query: 807 MTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVT 866
K TI + +A++ D+N++ DD T+ I++ S + + L+GHS V
Sbjct: 77 YDGKFEKTISGHKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF 135
Query: 867 GLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTR 926
F+ N++VS D + +WDV +T + L+T + + + + F++D +
Sbjct: 136 CCNFNPQSNLIVSGSFDESVRIWDV-----KTGKCLKT---LPAHSDPVSAVHFNRDGS- 186
Query: 927 FLLVHETH---LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 983
L+V ++ I++ CLK + P+S FS + + + + +D TL + +
Sbjct: 187 -LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 245
Query: 984 S 984
S
Sbjct: 246 S 246
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 76/187 (40%), Gaps = 27/187 (14%)
Query: 813 LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSD 872
T+ + +S+ F+P + +A D I I+ A + + GH ++ + +S
Sbjct: 41 FTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 99
Query: 873 ALNILVSSGGDAQIFVWDVD-GWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV- 930
N+LVS+ D + +WDV G ++T + P Q+ ++
Sbjct: 100 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP----------QSNLIVSG 149
Query: 931 -HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQ 989
+ + I++ + CLK P S P+S F+ D ++ +S DG
Sbjct: 150 SFDESVRIWDVKTGKCLKT-LPAHSDPVSAVHFNRDGSLIVSSSYDGL------------ 196
Query: 990 CRILSTA 996
CRI TA
Sbjct: 197 CRIWDTA 203
Score = 37.7 bits (86), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 51/221 (23%), Positives = 88/221 (39%), Gaps = 41/221 (18%)
Query: 304 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKL--------------FIR 349
+TL S+ +F+P Q L++ G+ +WDV +G+ L F R
Sbjct: 125 KTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 183
Query: 350 N------------FKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQ 397
+ ++WD A KT L+ D V+ V +SP+G + A + ++
Sbjct: 184 DGSLIVSSSYDGLCRIWDT-ASGQCLKT-LIDDDNPPVSFVKFSPNGKYILAATLDNTLK 241
Query: 398 LYAYHGGSDARQQLEIDAHVGNVND-----LAFSAPCKQISVITCGDDKTIKVWDAVTGS 452
L+ Y G + + G+ N+ FS + +++ +D + +W+ T
Sbjct: 242 LWDYSKGK------CLKTYTGHKNEKYCIFANFSVTGGKW-IVSGSEDNLVYIWNLQTKE 294
Query: 453 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 493
+GH V S H ENI ++ D IK W D
Sbjct: 295 IVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 335
Score = 36.6 bits (83), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 509 TRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQ 568
+ + +S NG L S + + W +G ++T G +L +S V + + +
Sbjct: 51 SSVKFSPNGEWL----ASSSADKLIKIWGAYDGKFEKTISGHKL---GISDVAWSSDSNL 103
Query: 569 ILAAGDDHVIKIWDMNKVQLLTTI 592
+++A DD +KIWD++ + L T+
Sbjct: 104 LVSASDDKTLKIWDVSSGKCLKTL 127
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 835 IAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSG--GDAQIFVWDVD 892
I G +D+ + I+N ++ E++ KL+GH+ V NI+ S+ D I +W D
Sbjct: 276 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 335
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 103/218 (47%), Gaps = 13/218 (5%)
Query: 374 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 433
+V+ V +SP+G L + + +++++ G D + + I H ++D+A+S+ +
Sbjct: 31 AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 86
Query: 434 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 493
++ DDKT+K+WD +G + +GH Y C + + I S S D ++ W
Sbjct: 87 -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 143
Query: 494 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 553
+ A + + ++ +G + S +S +G + W+ + G +T +
Sbjct: 144 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 197
Query: 554 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 591
+ VS V F ILAA D+ +K+WD +K + L T
Sbjct: 198 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 235
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/233 (23%), Positives = 107/233 (45%), Gaps = 20/233 (8%)
Query: 756 PRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILT 814
P +P + +F + T +AV S N +L S+S +I ++ K T
Sbjct: 12 PTPVKPNYALKFTLAGHT-----KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT 66
Query: 815 IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDAL 874
I + +A++ D+N++ DD T+ I++ S + + L+GHS V F+
Sbjct: 67 ISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS 125
Query: 875 NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETH 934
N++VS D + +WDV +T + L+T + + + + F++D + L+V ++
Sbjct: 126 NLIVSGSFDESVRIWDV-----KTGKCLKT---LPAHSDPVSAVHFNRDGS--LIVSSSY 175
Query: 935 ---LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 984
I++ CLK + P+S FS + + + + +D TL + + S
Sbjct: 176 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 228
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 77/186 (41%), Gaps = 25/186 (13%)
Query: 813 LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSD 872
T+ + +S+ F+P + +A D I I+ A + + GH ++ + +S
Sbjct: 23 FTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 81
Query: 873 ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-- 930
N+LVS+ D + +WDV + + L+T G + Q+ ++
Sbjct: 82 DSNLLVSASDDKTLKIWDV-----SSGKCLKTLKG----HSNYVFCCNFNPQSNLIVSGS 132
Query: 931 HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQC 990
+ + I++ + CLK P S P+S F+ D ++ +S DG C
Sbjct: 133 FDESVRIWDVKTGKCLKT-LPAHSDPVSAVHFNRDGSLIVSSSYDGL------------C 179
Query: 991 RILSTA 996
RI TA
Sbjct: 180 RIWDTA 185
Score = 36.6 bits (83), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 49/221 (22%), Positives = 87/221 (39%), Gaps = 41/221 (18%)
Query: 304 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKL--------------FIR 349
+TL S+ +F+P Q L++ G+ +WDV +G+ L F R
Sbjct: 107 KTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 165
Query: 350 N------------FKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQ 397
+ ++WD + L L+ D V+ V +SP+G + A + ++
Sbjct: 166 DGSLIVSSSYDGLCRIWDTASGQCL--KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLK 223
Query: 398 LYAYHGGSDARQQLEIDAHVGNVND-----LAFSAPCKQISVITCGDDKTIKVWDAVTGS 452
L+ Y G + + G+ N+ FS + +++ +D + +W+ T
Sbjct: 224 LWDYSKGKCLK------TYTGHKNEKYCIFANFSVTGGKW-IVSGSEDNLVYIWNLQTKE 276
Query: 453 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 493
+GH V S H ENI ++ D IK W D
Sbjct: 277 IVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 317
Score = 36.6 bits (83), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 509 TRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQ 568
+ + +S NG L S + + W +G ++T G +L +S V + + +
Sbjct: 33 SSVKFSPNGEWL----ASSSADKLIKIWGAYDGKFEKTISGHKL---GISDVAWSSDSNL 85
Query: 569 ILAAGDDHVIKIWDMNKVQLLTTI 592
+++A DD +KIWD++ + L T+
Sbjct: 86 LVSASDDKTLKIWDVSSGKCLKTL 109
Score = 35.0 bits (79), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 835 IAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSG--GDAQIFVWDVD 892
I G +D+ + I+N ++ E++ KL+GH+ V NI+ S+ D I +W D
Sbjct: 258 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 317
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 103/218 (47%), Gaps = 13/218 (5%)
Query: 374 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 433
+V+ V +SP+G L + + +++++ G D + + I H ++D+A+S+ +
Sbjct: 31 AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 86
Query: 434 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 493
++ DDKT+K+WD +G + +GH Y C + + I S S D ++ W
Sbjct: 87 -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 143
Query: 494 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 553
+ A + + ++ +G + S +S +G + W+ + G +T +
Sbjct: 144 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 197
Query: 554 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 591
+ VS V F ILAA D+ +K+WD +K + L T
Sbjct: 198 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 235
Score = 56.2 bits (134), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 110/239 (46%), Gaps = 20/239 (8%)
Query: 750 ATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMT 808
+ T+ P +P + +F + T +AV S N +L S+S +I ++
Sbjct: 6 SATQSKPTPVKPNYALKFTLAGHT-----KAVSSVKFSPNGEWLASSSADKLIKIWGAYD 60
Query: 809 FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGL 868
K TI + +A++ D+N++ DD T+ I++ S + + L+GHS V
Sbjct: 61 GKFEKTISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCC 119
Query: 869 VFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL 928
F+ N++VS D + +WDV +T + L+T + + + + F++D + L
Sbjct: 120 NFNPQSNLIVSGSFDESVRIWDV-----KTGKCLKT---LPAHSDPVSAVHFNRDGS--L 169
Query: 929 LVHETH---LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 984
+V ++ I++ CLK + P+S FS + + + + +D TL + + S
Sbjct: 170 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 228
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 77/186 (41%), Gaps = 25/186 (13%)
Query: 813 LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSD 872
T+ + +S+ F+P + +A D I I+ A + + GH ++ + +S
Sbjct: 23 FTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 81
Query: 873 ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-- 930
N+LVS+ D + +WDV + + L+T G + Q+ ++
Sbjct: 82 DSNLLVSASDDKTLKIWDV-----SSGKCLKTLKG----HSNYVFCCNFNPQSNLIVSGS 132
Query: 931 HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQC 990
+ + I++ + CLK P S P+S F+ D ++ +S DG C
Sbjct: 133 FDESVRIWDVKTGKCLKT-LPAHSDPVSAVHFNRDGSLIVSSSYDGL------------C 179
Query: 991 RILSTA 996
RI TA
Sbjct: 180 RIWDTA 185
Score = 36.6 bits (83), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 509 TRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQ 568
+ + +S NG L S + + W +G ++T G +L +S V + + +
Sbjct: 33 SSVKFSPNGEWL----ASSSADKLIKIWGAYDGKFEKTISGHKL---GISDVAWSSDSNL 85
Query: 569 ILAAGDDHVIKIWDMNKVQLLTTI 592
+++A DD +KIWD++ + L T+
Sbjct: 86 LVSASDDKTLKIWDVSSGKCLKTL 109
Score = 36.6 bits (83), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 49/221 (22%), Positives = 87/221 (39%), Gaps = 41/221 (18%)
Query: 304 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKL--------------FIR 349
+TL S+ +F+P Q L++ G+ +WDV +G+ L F R
Sbjct: 107 KTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 165
Query: 350 N------------FKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQ 397
+ ++WD + L L+ D V+ V +SP+G + A + ++
Sbjct: 166 DGSLIVSSSYDGLCRIWDTASGQCL--KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLK 223
Query: 398 LYAYHGGSDARQQLEIDAHVGNVND-----LAFSAPCKQISVITCGDDKTIKVWDAVTGS 452
L+ Y G + + G+ N+ FS + +++ +D + +W+ T
Sbjct: 224 LWDYSKGKCLK------TYTGHKNEKYCIFANFSVTGGKW-IVSGSEDNLVYIWNLQTKE 276
Query: 453 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 493
+GH V S H ENI ++ D IK W D
Sbjct: 277 IVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 317
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 835 IAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSG--GDAQIFVWDVD 892
I G +D+ + I+N ++ E++ KL+GH+ V NI+ S+ D I +W D
Sbjct: 258 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 317
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 103/218 (47%), Gaps = 13/218 (5%)
Query: 374 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 433
+V+ V +SP+G L + + +++++ G D + + I H ++D+A+S+ +
Sbjct: 26 AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 81
Query: 434 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 493
++ DDKT+K+WD +G + +GH Y C + + I S S D ++ W
Sbjct: 82 -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 138
Query: 494 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 553
+ A + + ++ +G + S +S +G + W+ + G +T +
Sbjct: 139 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 192
Query: 554 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 591
+ VS V F ILAA D+ +K+WD +K + L T
Sbjct: 193 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 230
Score = 56.2 bits (134), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 110/239 (46%), Gaps = 20/239 (8%)
Query: 750 ATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMT 808
+T+ P +P + +F + T +AV S N +L S+S +I ++
Sbjct: 1 GSTQSKPTPVKPNYALKFTLAGHT-----KAVSSVKFSPNGEWLASSSADKLIKIWGAYD 55
Query: 809 FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGL 868
K TI + +A++ D+N++ DD T+ I++ S + + L+GHS V
Sbjct: 56 GKFEKTISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCC 114
Query: 869 VFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL 928
F+ N++VS D + +WDV +T + L+T + + + + F++D + L
Sbjct: 115 NFNPQSNLIVSGSFDESVRIWDV-----KTGKCLKT---LPAHSDPVSAVHFNRDGS--L 164
Query: 929 LVHETH---LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 984
+V ++ I++ CLK + P+S FS + + + + +D TL + + S
Sbjct: 165 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 223
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 76/187 (40%), Gaps = 27/187 (14%)
Query: 813 LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSD 872
T+ + +S+ F+P + +A D I I+ A + + GH ++ + +S
Sbjct: 18 FTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 76
Query: 873 ALNILVSSGGDAQIFVWDVD-GWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV- 930
N+LVS+ D + +WDV G ++T + P Q+ ++
Sbjct: 77 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP----------QSNLIVSG 126
Query: 931 -HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQ 989
+ + I++ + CLK P S P+S F+ D ++ +S DG
Sbjct: 127 SFDESVRIWDVKTGKCLKT-LPAHSDPVSAVHFNRDGSLIVSSSYDGL------------ 173
Query: 990 CRILSTA 996
CRI TA
Sbjct: 174 CRIWDTA 180
Score = 36.6 bits (83), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 49/221 (22%), Positives = 87/221 (39%), Gaps = 41/221 (18%)
Query: 304 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKL--------------FIR 349
+TL S+ +F+P Q L++ G+ +WDV +G+ L F R
Sbjct: 102 KTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 160
Query: 350 N------------FKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQ 397
+ ++WD + L L+ D V+ V +SP+G + A + ++
Sbjct: 161 DGSLIVSSSYDGLCRIWDTASGQCL--KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLK 218
Query: 398 LYAYHGGSDARQQLEIDAHVGNVND-----LAFSAPCKQISVITCGDDKTIKVWDAVTGS 452
L+ Y G + + G+ N+ FS + +++ +D + +W+ T
Sbjct: 219 LWDYSKGKCLK------TYTGHKNEKYCIFANFSVTGGKW-IVSGSEDNLVYIWNLQTKE 271
Query: 453 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 493
+GH V S H ENI ++ D IK W D
Sbjct: 272 IVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 312
Score = 36.6 bits (83), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 509 TRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQ 568
+ + +S NG L S + + W +G ++T G +L +S V + + +
Sbjct: 28 SSVKFSPNGEWL----ASSSADKLIKIWGAYDGKFEKTISGHKL---GISDVAWSSDSNL 80
Query: 569 ILAAGDDHVIKIWDMNKVQLLTTI 592
+++A DD +KIWD++ + L T+
Sbjct: 81 LVSASDDKTLKIWDVSSGKCLKTL 104
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 835 IAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSG--GDAQIFVWDVD 892
I G +D+ + I+N ++ E++ KL+GH+ V NI+ S+ D I +W D
Sbjct: 253 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 312
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 103/218 (47%), Gaps = 13/218 (5%)
Query: 374 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 433
+V+ V +SP+G L + + +++++ G D + + I H ++D+A+S+ +
Sbjct: 25 AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 80
Query: 434 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 493
++ DDKT+K+WD +G + +GH Y C + + I S S D ++ W
Sbjct: 81 -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 137
Query: 494 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 553
+ A + + ++ +G + S +S +G + W+ + G +T +
Sbjct: 138 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 191
Query: 554 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 591
+ VS V F ILAA D+ +K+WD +K + L T
Sbjct: 192 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 229
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/237 (23%), Positives = 109/237 (45%), Gaps = 20/237 (8%)
Query: 752 TKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFK 810
T+ P +P + +F + T +AV S N +L S+S +I ++ K
Sbjct: 2 TQSKPTPVKPNYALKFTLAGHT-----KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK 56
Query: 811 TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVF 870
TI + +A++ D+N++ DD T+ I++ S + + L+GHS V F
Sbjct: 57 FEKTISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF 115
Query: 871 SDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV 930
+ N++VS D + +WDV +T + L+T + + + + F++D + L+V
Sbjct: 116 NPQSNLIVSGSFDESVRIWDV-----KTGKCLKT---LPAHSDPVSAVHFNRDGS--LIV 165
Query: 931 HETH---LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 984
++ I++ CLK + P+S FS + + + + +D TL + + S
Sbjct: 166 SSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 222
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 76/187 (40%), Gaps = 27/187 (14%)
Query: 813 LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSD 872
T+ + +S+ F+P + +A D I I+ A + + GH ++ + +S
Sbjct: 17 FTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 75
Query: 873 ALNILVSSGGDAQIFVWDVD-GWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV- 930
N+LVS+ D + +WDV G ++T + P Q+ ++
Sbjct: 76 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP----------QSNLIVSG 125
Query: 931 -HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQ 989
+ + I++ + CLK P S P+S F+ D ++ +S DG
Sbjct: 126 SFDESVRIWDVKTGKCLKT-LPAHSDPVSAVHFNRDGSLIVSSSYDGL------------ 172
Query: 990 CRILSTA 996
CRI TA
Sbjct: 173 CRIWDTA 179
Score = 36.6 bits (83), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 49/221 (22%), Positives = 87/221 (39%), Gaps = 41/221 (18%)
Query: 304 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKL--------------FIR 349
+TL S+ +F+P Q L++ G+ +WDV +G+ L F R
Sbjct: 101 KTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 159
Query: 350 N------------FKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQ 397
+ ++WD + L L+ D V+ V +SP+G + A + ++
Sbjct: 160 DGSLIVSSSYDGLCRIWDTASGQCL--KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLK 217
Query: 398 LYAYHGGSDARQQLEIDAHVGNVND-----LAFSAPCKQISVITCGDDKTIKVWDAVTGS 452
L+ Y G + + G+ N+ FS + +++ +D + +W+ T
Sbjct: 218 LWDYSKGKCLK------TYTGHKNEKYCIFANFSVTGGKW-IVSGSEDNLVYIWNLQTKE 270
Query: 453 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 493
+GH V S H ENI ++ D IK W D
Sbjct: 271 IVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311
Score = 36.2 bits (82), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 509 TRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQ 568
+ + +S NG L S + + W +G ++T G +L +S V + + +
Sbjct: 27 SSVKFSPNGEWL----ASSSADKLIKIWGAYDGKFEKTISGHKL---GISDVAWSSDSNL 79
Query: 569 ILAAGDDHVIKIWDMNKVQLLTTI 592
+++A DD +KIWD++ + L T+
Sbjct: 80 LVSASDDKTLKIWDVSSGKCLKTL 103
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 835 IAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSG--GDAQIFVWDVD 892
I G +D+ + I+N ++ E++ KL+GH+ V NI+ S+ D I +W D
Sbjct: 252 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 103/218 (47%), Gaps = 13/218 (5%)
Query: 374 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 433
+V+ V +SP+G L + + +++++ G D + + I H ++D+A+S+ +
Sbjct: 21 AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 76
Query: 434 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 493
++ DDKT+K+WD +G + +GH Y C + + I S S D ++ W
Sbjct: 77 -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 133
Query: 494 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 553
+ A + + ++ +G + S +S +G + W+ + G +T +
Sbjct: 134 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 187
Query: 554 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 591
+ VS V F ILAA D+ +K+WD +K + L T
Sbjct: 188 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 225
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/233 (23%), Positives = 107/233 (45%), Gaps = 20/233 (8%)
Query: 756 PRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILT 814
P +P + +F + T +AV S N +L S+S +I ++ K T
Sbjct: 2 PTPVKPNYALKFTLAGHT-----KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT 56
Query: 815 IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDAL 874
I + +A++ D+N++ DD T+ I++ S + + L+GHS V F+
Sbjct: 57 ISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS 115
Query: 875 NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETH 934
N++VS D + +WDV +T + L+T + + + + F++D + L+V ++
Sbjct: 116 NLIVSGSFDESVRIWDV-----KTGKCLKT---LPAHSDPVSAVHFNRDGS--LIVSSSY 165
Query: 935 ---LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 984
I++ CLK + P+S FS + + + + +D TL + + S
Sbjct: 166 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 218
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 76/187 (40%), Gaps = 27/187 (14%)
Query: 813 LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSD 872
T+ + +S+ F+P + +A D I I+ A + + GH ++ + +S
Sbjct: 13 FTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 71
Query: 873 ALNILVSSGGDAQIFVWDVD-GWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV- 930
N+LVS+ D + +WDV G ++T + P Q+ ++
Sbjct: 72 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP----------QSNLIVSG 121
Query: 931 -HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQ 989
+ + I++ + CLK P S P+S F+ D ++ +S DG
Sbjct: 122 SFDESVRIWDVKTGKCLKT-LPAHSDPVSAVHFNRDGSLIVSSSYDGL------------ 168
Query: 990 CRILSTA 996
CRI TA
Sbjct: 169 CRIWDTA 175
Score = 36.6 bits (83), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 49/221 (22%), Positives = 87/221 (39%), Gaps = 41/221 (18%)
Query: 304 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKL--------------FIR 349
+TL S+ +F+P Q L++ G+ +WDV +G+ L F R
Sbjct: 97 KTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 155
Query: 350 N------------FKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQ 397
+ ++WD + L L+ D V+ V +SP+G + A + ++
Sbjct: 156 DGSLIVSSSYDGLCRIWDTASGQCL--KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLK 213
Query: 398 LYAYHGGSDARQQLEIDAHVGNVND-----LAFSAPCKQISVITCGDDKTIKVWDAVTGS 452
L+ Y G + + G+ N+ FS + +++ +D + +W+ T
Sbjct: 214 LWDYSKGKCLK------TYTGHKNEKYCIFANFSVTGGKW-IVSGSEDNLVYIWNLQTKE 266
Query: 453 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 493
+GH V S H ENI ++ D IK W D
Sbjct: 267 IVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 307
Score = 36.6 bits (83), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 509 TRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQ 568
+ + +S NG L S + + W +G ++T G +L +S V + + +
Sbjct: 23 SSVKFSPNGEWL----ASSSADKLIKIWGAYDGKFEKTISGHKL---GISDVAWSSDSNL 75
Query: 569 ILAAGDDHVIKIWDMNKVQLLTTI 592
+++A DD +KIWD++ + L T+
Sbjct: 76 LVSASDDKTLKIWDVSSGKCLKTL 99
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 835 IAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSG--GDAQIFVWDVD 892
I G +D+ + I+N ++ E++ KL+GH+ V NI+ S+ D I +W D
Sbjct: 248 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 307
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 103/218 (47%), Gaps = 13/218 (5%)
Query: 374 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 433
+V+ V +SP+G L + + +++++ G D + + I H ++D+A+S+ +
Sbjct: 25 AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 80
Query: 434 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 493
++ DDKT+K+WD +G + +GH Y C + + I S S D ++ W
Sbjct: 81 -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 137
Query: 494 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 553
+ A + + ++ +G + S +S +G + W+ + G +T +
Sbjct: 138 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 191
Query: 554 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 591
+ VS V F ILAA D+ +K+WD +K + L T
Sbjct: 192 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 229
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/237 (23%), Positives = 109/237 (45%), Gaps = 20/237 (8%)
Query: 752 TKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFK 810
T+ P +P + +F + T +AV S N +L S+S +I ++ K
Sbjct: 2 TQSKPTPVKPNYALKFTLAGHT-----KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK 56
Query: 811 TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVF 870
TI + +A++ D+N++ DD T+ I++ S + + L+GHS V F
Sbjct: 57 FEKTISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF 115
Query: 871 SDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV 930
+ N++VS D + +WDV +T + L+T + + + + F++D + L+V
Sbjct: 116 NPQSNLIVSGSFDESVRIWDV-----KTGKCLKT---LPAHSDPVSAVHFNRDGS--LIV 165
Query: 931 HETH---LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 984
++ I++ CLK + P+S FS + + + + +D TL + + S
Sbjct: 166 SSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 222
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 77/186 (41%), Gaps = 25/186 (13%)
Query: 813 LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSD 872
T+ + +S+ F+P + +A D I I+ A + + GH ++ + +S
Sbjct: 17 FTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 75
Query: 873 ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-- 930
N+LVS+ D + +WDV + + L+T G + Q+ ++
Sbjct: 76 DSNLLVSASDDKTLKIWDV-----SSGKCLKTLKG----HSNYVFCCNFNPQSNLIVSGS 126
Query: 931 HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQC 990
+ + I++ + CLK P S P+S F+ D ++ +S DG C
Sbjct: 127 FDESVRIWDVKTGKCLKT-LPAHSDPVSAVHFNRDGSLIVSSSYDGL------------C 173
Query: 991 RILSTA 996
RI TA
Sbjct: 174 RIWDTA 179
Score = 36.6 bits (83), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 49/221 (22%), Positives = 87/221 (39%), Gaps = 41/221 (18%)
Query: 304 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKL--------------FIR 349
+TL S+ +F+P Q L++ G+ +WDV +G+ L F R
Sbjct: 101 KTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 159
Query: 350 N------------FKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQ 397
+ ++WD + L L+ D V+ V +SP+G + A + ++
Sbjct: 160 DGSLIVSSSYDGLCRIWDTASGQCL--KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLK 217
Query: 398 LYAYHGGSDARQQLEIDAHVGNVND-----LAFSAPCKQISVITCGDDKTIKVWDAVTGS 452
L+ Y G + + G+ N+ FS + +++ +D + +W+ T
Sbjct: 218 LWDYSKGKCLK------TYTGHKNEKYCIFANFSVTGGKW-IVSGSEDNLVYIWNLQTKE 270
Query: 453 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 493
+GH V S H ENI ++ D IK W D
Sbjct: 271 IVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311
Score = 36.6 bits (83), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 509 TRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQ 568
+ + +S NG L S + + W +G ++T G +L +S V + + +
Sbjct: 27 SSVKFSPNGEWL----ASSSADKLIKIWGAYDGKFEKTISGHKL---GISDVAWSSDSNL 79
Query: 569 ILAAGDDHVIKIWDMNKVQLLTTI 592
+++A DD +KIWD++ + L T+
Sbjct: 80 LVSASDDKTLKIWDVSSGKCLKTL 103
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 835 IAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSG--GDAQIFVWDVD 892
I G +D+ + I+N ++ E++ KL+GH+ V NI+ S+ D I +W D
Sbjct: 252 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 103/218 (47%), Gaps = 13/218 (5%)
Query: 374 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 433
+V+ V +SP+G L + + +++++ G D + + I H ++D+A+S+ +
Sbjct: 42 AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 97
Query: 434 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 493
++ DDKT+K+WD +G + +GH Y C + + I S S D ++ W
Sbjct: 98 -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 154
Query: 494 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 553
+ A + + ++ +G + S +S +G + W+ + G +T +
Sbjct: 155 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 208
Query: 554 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 591
+ VS V F ILAA D+ +K+WD +K + L T
Sbjct: 209 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 246
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/237 (23%), Positives = 109/237 (45%), Gaps = 20/237 (8%)
Query: 752 TKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFK 810
T+ P +P + +F + T +AV S N +L S+S +I ++ K
Sbjct: 19 TQSKPTPVKPNYALKFTLAGHT-----KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK 73
Query: 811 TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVF 870
TI + +A++ D+N++ DD T+ I++ S + + L+GHS V F
Sbjct: 74 FEKTISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF 132
Query: 871 SDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV 930
+ N++VS D + +WDV +T + L+T + + + + F++D + L+V
Sbjct: 133 NPQSNLIVSGSFDESVRIWDV-----KTGKCLKT---LPAHSDPVSAVHFNRDGS--LIV 182
Query: 931 HETH---LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 984
++ I++ CLK + P+S FS + + + + +D TL + + S
Sbjct: 183 SSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 239
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 76/187 (40%), Gaps = 27/187 (14%)
Query: 813 LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSD 872
T+ + +S+ F+P + +A D I I+ A + + GH ++ + +S
Sbjct: 34 FTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 92
Query: 873 ALNILVSSGGDAQIFVWDVD-GWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV- 930
N+LVS+ D + +WDV G ++T + P Q+ ++
Sbjct: 93 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP----------QSNLIVSG 142
Query: 931 -HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQ 989
+ + I++ + CLK P S P+S F+ D ++ +S DG
Sbjct: 143 SFDESVRIWDVKTGKCLKT-LPAHSDPVSAVHFNRDGSLIVSSSYDGL------------ 189
Query: 990 CRILSTA 996
CRI TA
Sbjct: 190 CRIWDTA 196
Score = 36.6 bits (83), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 49/221 (22%), Positives = 87/221 (39%), Gaps = 41/221 (18%)
Query: 304 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKL--------------FIR 349
+TL S+ +F+P Q L++ G+ +WDV +G+ L F R
Sbjct: 118 KTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 176
Query: 350 N------------FKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQ 397
+ ++WD + L L+ D V+ V +SP+G + A + ++
Sbjct: 177 DGSLIVSSSYDGLCRIWDTASGQCL--KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLK 234
Query: 398 LYAYHGGSDARQQLEIDAHVGNVND-----LAFSAPCKQISVITCGDDKTIKVWDAVTGS 452
L+ Y G + + G+ N+ FS + +++ +D + +W+ T
Sbjct: 235 LWDYSKGKCLK------TYTGHKNEKYCIFANFSVTGGKW-IVSGSEDNLVYIWNLQTKE 287
Query: 453 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 493
+GH V S H ENI ++ D IK W D
Sbjct: 288 IVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 328
Score = 36.2 bits (82), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 509 TRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQ 568
+ + +S NG L S + + W +G ++T G +L +S V + + +
Sbjct: 44 SSVKFSPNGEWL----ASSSADKLIKIWGAYDGKFEKTISGHKL---GISDVAWSSDSNL 96
Query: 569 ILAAGDDHVIKIWDMNKVQLLTTI 592
+++A DD +KIWD++ + L T+
Sbjct: 97 LVSASDDKTLKIWDVSSGKCLKTL 120
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 835 IAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSG--GDAQIFVWDVD 892
I G +D+ + I+N ++ E++ KL+GH+ V NI+ S+ D I +W D
Sbjct: 269 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 328
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/263 (23%), Positives = 119/263 (45%), Gaps = 24/263 (9%)
Query: 374 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 433
+V+ V +SP+G L + + +++++ G D + + I H ++D+A+S+ +
Sbjct: 28 AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 83
Query: 434 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 493
++ DDKT+K+WD +G + +GH Y C + + I S S D ++ W
Sbjct: 84 -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 494 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 553
+ A + + ++ +G + S +S +G + W+ + G +T +
Sbjct: 141 TGMCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 194
Query: 554 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN---- 609
+ VS V F ILAA D+ +K+WD +K + L T +N + C N
Sbjct: 195 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG----HKNEKYCIFANFSVT 250
Query: 610 -GTLLAVIANENRIKI--LETPE 629
G + + +N + I L+T E
Sbjct: 251 GGKWIVSGSEDNMVYIWNLQTKE 273
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 56/242 (23%), Positives = 108/242 (44%), Gaps = 22/242 (9%)
Query: 748 TEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIV 806
+ + T+ P +P + F + T +AV S N +L S+S +I ++
Sbjct: 1 SSSATQSKPTPVKPNYALMFTLAGHT-----KAVSSVKFSPNGEWLASSSADKLIKIWGA 55
Query: 807 MTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVT 866
K TI + +A++ D+N++ DD T+ I++ S + + L+GHS V
Sbjct: 56 YDGKFEKTISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF 114
Query: 867 GLVFSDALNILVSSGGDAQIFVWDVD-GWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQT 925
F+ N++VS D + +WDV G ++T + P + + F++D +
Sbjct: 115 CCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDP---------VSAVHFNRDGS 165
Query: 926 RFLLVHETH---LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHE 982
L+V ++ I++ CLK + P+S FS + + + + +D TL + +
Sbjct: 166 --LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 223
Query: 983 AS 984
S
Sbjct: 224 YS 225
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/190 (22%), Positives = 79/190 (41%), Gaps = 25/190 (13%)
Query: 809 FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGL 868
+ + T+ + +S+ F+P + +A D I I+ A + + GH ++ +
Sbjct: 16 YALMFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 74
Query: 869 VFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL 928
+S N+LVS+ D + +WDV + + L+T G + Q+ +
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDV-----SSGKCLKTLKG----HSNYVFCCNFNPQSNLI 125
Query: 929 LV--HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 986
+ + + I++ + CLK P S P+S F+ D ++ +S DG
Sbjct: 126 VSGSFDESVRIWDVKTGMCLKT-LPAHSDPVSAVHFNRDGSLIVSSSYDGL--------- 175
Query: 987 EVQCRILSTA 996
CRI TA
Sbjct: 176 ---CRIWDTA 182
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 49/221 (22%), Positives = 86/221 (38%), Gaps = 41/221 (18%)
Query: 304 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKL--------------FIR 349
+TL S+ +F+P Q L++ G+ +WDV +G L F R
Sbjct: 104 KTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNR 162
Query: 350 N------------FKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQ 397
+ ++WD + L L+ D V+ V +SP+G + A + ++
Sbjct: 163 DGSLIVSSSYDGLCRIWDTASGQCL--KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLK 220
Query: 398 LYAYHGGSDARQQLEIDAHVGNVND-----LAFSAPCKQISVITCGDDKTIKVWDAVTGS 452
L+ Y G + + G+ N+ FS + +++ +D + +W+ T
Sbjct: 221 LWDYSKGKCLK------TYTGHKNEKYCIFANFSVTGGKW-IVSGSEDNMVYIWNLQTKE 273
Query: 453 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 493
+GH V S H ENI ++ D IK W D
Sbjct: 274 IVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 314
Score = 35.0 bits (79), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 835 IAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSG--GDAQIFVWDVD 892
I G +D+ + I+N ++ E++ KL+GH+ V NI+ S+ D I +W D
Sbjct: 255 IVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 314
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 103/218 (47%), Gaps = 13/218 (5%)
Query: 374 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 433
+V+ V +SP+G L + + +++++ G D + + I H ++D+A+S+ +
Sbjct: 31 AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 86
Query: 434 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 493
++ DDKT+K+WD +G + +GH Y C + + I S S D ++ W
Sbjct: 87 -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 143
Query: 494 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 553
+ A + + ++ +G + S +S +G + W+ + G +T +
Sbjct: 144 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 197
Query: 554 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 591
+ VS V F ILAA D+ +K+WD +K + L T
Sbjct: 198 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 235
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 110/239 (46%), Gaps = 20/239 (8%)
Query: 750 ATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMT 808
+ T+ P +P + +F + T +AV S N +L S+S +I ++
Sbjct: 6 SATQSKPTPVKPNYALKFTLAGHT-----KAVSSVKFSPNGEWLASSSADKLIKIWGAYD 60
Query: 809 FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGL 868
K TI + +A++ D+N++ DD T+ I++ S + + L+GHS V
Sbjct: 61 GKFEKTISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCC 119
Query: 869 VFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL 928
F+ N++VS D + +WDV +T + L+T + + + + F++D + L
Sbjct: 120 NFNPQSNLIVSGSFDESVRIWDV-----KTGKCLKT---LPAHSDPVSAVHFNRDGS--L 169
Query: 929 LVHETH---LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 984
+V ++ I++ CLK + P+S FS + + + + +D TL + + S
Sbjct: 170 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 228
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 77/186 (41%), Gaps = 25/186 (13%)
Query: 813 LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSD 872
T+ + +S+ F+P + +A D I I+ A + + GH ++ + +S
Sbjct: 23 FTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 81
Query: 873 ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-- 930
N+LVS+ D + +WDV + + L+T G + Q+ ++
Sbjct: 82 DSNLLVSASDDKTLKIWDV-----SSGKCLKTLKG----HSNYVFCCNFNPQSNLIVSGS 132
Query: 931 HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQC 990
+ + I++ + CLK P S P+S F+ D ++ +S DG C
Sbjct: 133 FDESVRIWDVKTGKCLKT-LPAHSDPVSAVHFNRDGSLIVSSSYDGL------------C 179
Query: 991 RILSTA 996
RI TA
Sbjct: 180 RIWDTA 185
Score = 36.6 bits (83), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 509 TRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQ 568
+ + +S NG L S + + W +G ++T G +L +S V + + +
Sbjct: 33 SSVKFSPNGEWL----ASSSADKLIKIWGAYDGKFEKTISGHKL---GISDVAWSSDSNL 85
Query: 569 ILAAGDDHVIKIWDMNKVQLLTTI 592
+++A DD +KIWD++ + L T+
Sbjct: 86 LVSASDDKTLKIWDVSSGKCLKTL 109
Score = 36.2 bits (82), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 49/221 (22%), Positives = 87/221 (39%), Gaps = 41/221 (18%)
Query: 304 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKL--------------FIR 349
+TL S+ +F+P Q L++ G+ +WDV +G+ L F R
Sbjct: 107 KTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 165
Query: 350 N------------FKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQ 397
+ ++WD + L L+ D V+ V +SP+G + A + ++
Sbjct: 166 DGSLIVSSSYDGLCRIWDTASGQCL--KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLK 223
Query: 398 LYAYHGGSDARQQLEIDAHVGNVND-----LAFSAPCKQISVITCGDDKTIKVWDAVTGS 452
L+ Y G + + G+ N+ FS + +++ +D + +W+ T
Sbjct: 224 LWDYSKGKCLK------TYTGHKNEKYCIFANFSVTGGKW-IVSGSEDNLVYIWNLQTKE 276
Query: 453 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 493
+GH V S H ENI ++ D IK W D
Sbjct: 277 IVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 317
Score = 34.7 bits (78), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 835 IAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSG--GDAQIFVWDVD 892
I G +D+ + I+N ++ E++ KL+GH+ V NI+ S+ D I +W D
Sbjct: 258 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 317
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 103/218 (47%), Gaps = 13/218 (5%)
Query: 374 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 433
+V+ V +SP+G L + + +++++ G D + + I H ++D+A+S+ +
Sbjct: 24 AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 79
Query: 434 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 493
++ DDKT+K+WD +G + +GH Y C + + I S S D ++ W
Sbjct: 80 -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 136
Query: 494 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 553
+ A + + ++ +G + S +S +G + W+ + G +T +
Sbjct: 137 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 190
Query: 554 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 591
+ VS V F ILAA D+ +K+WD +K + L T
Sbjct: 191 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 228
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 54/229 (23%), Positives = 106/229 (46%), Gaps = 20/229 (8%)
Query: 760 QPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPP 818
+P + +F + T +AV S N +L S+S +I ++ K TI
Sbjct: 9 KPNYALKFTLAGHT-----KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH 63
Query: 819 SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILV 878
+ +A++ D+N++ DD T+ I++ S + + L+GHS V F+ N++V
Sbjct: 64 KLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 122
Query: 879 SSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETH---L 935
S D + +WDV +T + L+T + + + + F++D + L+V ++
Sbjct: 123 SGSFDESVRIWDV-----KTGKCLKT---LPAHSDPVSAVHFNRDGS--LIVSSSYDGLC 172
Query: 936 AIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 984
I++ CLK + P+S FS + + + + +D TL + + S
Sbjct: 173 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 221
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 77/186 (41%), Gaps = 25/186 (13%)
Query: 813 LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSD 872
T+ + +S+ F+P + +A D I I+ A + + GH ++ + +S
Sbjct: 16 FTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 74
Query: 873 ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-- 930
N+LVS+ D + +WDV + + L+T G + Q+ ++
Sbjct: 75 DSNLLVSASDDKTLKIWDV-----SSGKCLKTLKG----HSNYVFCCNFNPQSNLIVSGS 125
Query: 931 HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQC 990
+ + I++ + CLK P S P+S F+ D ++ +S DG C
Sbjct: 126 FDESVRIWDVKTGKCLKT-LPAHSDPVSAVHFNRDGSLIVSSSYDGL------------C 172
Query: 991 RILSTA 996
RI TA
Sbjct: 173 RIWDTA 178
Score = 36.6 bits (83), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 509 TRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQ 568
+ + +S NG L S + + W +G ++T G +L +S V + + +
Sbjct: 26 SSVKFSPNGEWL----ASSSADKLIKIWGAYDGKFEKTISGHKL---GISDVAWSSDSNL 78
Query: 569 ILAAGDDHVIKIWDMNKVQLLTTI 592
+++A DD +KIWD++ + L T+
Sbjct: 79 LVSASDDKTLKIWDVSSGKCLKTL 102
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 49/221 (22%), Positives = 87/221 (39%), Gaps = 41/221 (18%)
Query: 304 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKL--------------FIR 349
+TL S+ +F+P Q L++ G+ +WDV +G+ L F R
Sbjct: 100 KTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 158
Query: 350 N------------FKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQ 397
+ ++WD + L L+ D V+ V +SP+G + A + ++
Sbjct: 159 DGSLIVSSSYDGLCRIWDTASGQCL--KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLK 216
Query: 398 LYAYHGGSDARQQLEIDAHVGNVND-----LAFSAPCKQISVITCGDDKTIKVWDAVTGS 452
L+ Y G + + G+ N+ FS + +++ +D + +W+ T
Sbjct: 217 LWDYSKGKCLK------TYTGHKNEKYCIFANFSVTGGKW-IVSGSEDNLVYIWNLQTKE 269
Query: 453 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 493
+GH V S H ENI ++ D IK W D
Sbjct: 270 IVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 310
Score = 34.7 bits (78), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 835 IAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSG--GDAQIFVWDVD 892
I G +D+ + I+N ++ E++ KL+GH+ V NI+ S+ D I +W D
Sbjct: 251 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 310
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 103/218 (47%), Gaps = 13/218 (5%)
Query: 374 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 433
+V+ V +SP+G L + + +++++ G D + + I H ++D+A+S+ +
Sbjct: 30 AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 85
Query: 434 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 493
++ DDKT+K+WD +G + +GH Y C + + I S S D ++ W
Sbjct: 86 -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 142
Query: 494 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 553
+ A + + ++ +G + S +S +G + W+ + G +T +
Sbjct: 143 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 196
Query: 554 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 591
+ VS V F ILAA D+ +K+WD +K + L T
Sbjct: 197 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 234
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 110/239 (46%), Gaps = 20/239 (8%)
Query: 750 ATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMT 808
+ T+ P +P + +F + T +AV S N +L S+S +I ++
Sbjct: 5 SATQSKPTPVKPNYALKFTLAGHT-----KAVSSVKFSPNGEWLASSSADKLIKIWGAYD 59
Query: 809 FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGL 868
K TI + +A++ D+N++ DD T+ I++ S + + L+GHS V
Sbjct: 60 GKFEKTISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCC 118
Query: 869 VFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL 928
F+ N++VS D + +WDV +T + L+T + + + + F++D + L
Sbjct: 119 NFNPQSNLIVSGSFDESVRIWDV-----KTGKCLKT---LPAHSDPVSAVHFNRDGS--L 168
Query: 929 LVHETH---LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 984
+V ++ I++ CLK + P+S FS + + + + +D TL + + S
Sbjct: 169 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 227
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 77/186 (41%), Gaps = 25/186 (13%)
Query: 813 LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSD 872
T+ + +S+ F+P + +A D I I+ A + + GH ++ + +S
Sbjct: 22 FTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 80
Query: 873 ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-- 930
N+LVS+ D + +WDV + + L+T G + Q+ ++
Sbjct: 81 DSNLLVSASDDKTLKIWDV-----SSGKCLKTLKG----HSNYVFCCNFNPQSNLIVSGS 131
Query: 931 HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQC 990
+ + I++ + CLK P S P+S F+ D ++ +S DG C
Sbjct: 132 FDESVRIWDVKTGKCLKT-LPAHSDPVSAVHFNRDGSLIVSSSYDGL------------C 178
Query: 991 RILSTA 996
RI TA
Sbjct: 179 RIWDTA 184
Score = 36.2 bits (82), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 509 TRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQ 568
+ + +S NG L S + + W +G ++T G +L +S V + + +
Sbjct: 32 SSVKFSPNGEWL----ASSSADKLIKIWGAYDGKFEKTISGHKL---GISDVAWSSDSNL 84
Query: 569 ILAAGDDHVIKIWDMNKVQLLTTI 592
+++A DD +KIWD++ + L T+
Sbjct: 85 LVSASDDKTLKIWDVSSGKCLKTL 108
Score = 36.2 bits (82), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 51/221 (23%), Positives = 88/221 (39%), Gaps = 41/221 (18%)
Query: 304 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKL--------------FIR 349
+TL S+ +F+P Q L++ G+ +WDV +G+ L F R
Sbjct: 106 KTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 164
Query: 350 N------------FKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQ 397
+ ++WD A KT L+ D V+ V +SP+G + A + ++
Sbjct: 165 DGSLIVSSSYDGLCRIWDT-ASGQCLKT-LIDDDNPPVSFVKFSPNGKYILAATLDNTLK 222
Query: 398 LYAYHGGSDARQQLEIDAHVGNVND-----LAFSAPCKQISVITCGDDKTIKVWDAVTGS 452
L+ Y G + + G+ N+ FS + +++ +D + +W+ T
Sbjct: 223 LWDYSKGKCLK------TYTGHKNEKYCIFANFSVTGGKW-IVSGSEDNLVYIWNLQTKE 275
Query: 453 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 493
+GH V S H ENI ++ D IK W D
Sbjct: 276 IVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 316
Score = 34.7 bits (78), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 835 IAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSG--GDAQIFVWDVD 892
I G +D+ + I+N ++ E++ KL+GH+ V NI+ S+ D I +W D
Sbjct: 257 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 316
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/236 (23%), Positives = 108/236 (45%), Gaps = 17/236 (7%)
Query: 374 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 433
+V+ V +SP+G L + + +++++ G D + + I H ++D+A+S+ +
Sbjct: 28 AVSSVKFSPNGEWLAASSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 83
Query: 434 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 493
++ DDKT+K+WD +G + +GH Y C + + I S S D ++ W
Sbjct: 84 -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 494 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 553
+ A + + ++ +G + S +S +G + W+ + G +T +
Sbjct: 141 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 194
Query: 554 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN 609
+ VS V F ILAA D+ +K+WD +K + L T +N + C N
Sbjct: 195 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG----HKNEKYCIFAN 246
Score = 53.1 bits (126), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 53/229 (23%), Positives = 106/229 (46%), Gaps = 20/229 (8%)
Query: 760 QPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPP 818
+P + +F + T +AV S N +L ++S +I ++ K TI
Sbjct: 13 KPNYALKFTLAGHT-----KAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGH 67
Query: 819 SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILV 878
+ +A++ D+N++ DD T+ I++ S + + L+GHS V F+ N++V
Sbjct: 68 KLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 126
Query: 879 SSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETH---L 935
S D + +WDV +T + L+T + + + + F++D + L+V ++
Sbjct: 127 SGSFDESVRIWDV-----KTGKCLKT---LPAHSDPVSAVHFNRDGS--LIVSSSYDGLC 176
Query: 936 AIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 984
I++ CLK + P+S FS + + + + +D TL + + S
Sbjct: 177 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 225
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/200 (22%), Positives = 82/200 (41%), Gaps = 25/200 (12%)
Query: 799 GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL 858
G S ++ + T+ + +S+ F+P + +A D I I+ A + +
Sbjct: 6 GRGSEFVKPNYALKFTLAGHTKAVSSVKFSP-NGEWLAASSADKLIKIWGAYDGKFEKTI 64
Query: 859 EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHI 918
GH ++ + +S N+LVS+ D + +WDV + + L+T G +
Sbjct: 65 SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV-----SSGKCLKTLKG----HSNYVFC 115
Query: 919 QFHKDQTRFLL--VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDG 976
Q+ ++ + + I++ + CLK P S P+S F+ D ++ +S DG
Sbjct: 116 CNFNPQSNLIVSGSFDESVRIWDVKTGKCLKT-LPAHSDPVSAVHFNRDGSLIVSSSYDG 174
Query: 977 TLSIHEASNLEVQCRILSTA 996
CRI TA
Sbjct: 175 L------------CRIWDTA 182
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 51/221 (23%), Positives = 88/221 (39%), Gaps = 41/221 (18%)
Query: 304 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKL--------------FIR 349
+TL S+ +F+P Q L++ G+ +WDV +G+ L F R
Sbjct: 104 KTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 162
Query: 350 N------------FKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQ 397
+ ++WD A KT L+ D V+ V +SP+G + A + ++
Sbjct: 163 DGSLIVSSSYDGLCRIWDT-ASGQCLKT-LIDDDNPPVSFVKFSPNGKYILAATLDNTLK 220
Query: 398 LYAYHGGSDARQQLEIDAHVGNVND-----LAFSAPCKQISVITCGDDKTIKVWDAVTGS 452
L+ Y G + + G+ N+ FS + +++ +D + +W+ T
Sbjct: 221 LWDYSKGKCLK------TYTGHKNEKYCIFANFSVTGGKW-IVSGSEDNLVYIWNLQTKE 273
Query: 453 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 493
+GH V S H ENI ++ D IK W D
Sbjct: 274 IVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 314
Score = 34.3 bits (77), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 835 IAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSG--GDAQIFVWDVD 892
I G +D+ + I+N ++ E++ KL+GH+ V NI+ S+ D I +W D
Sbjct: 255 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 314
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/236 (23%), Positives = 108/236 (45%), Gaps = 17/236 (7%)
Query: 374 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 433
+V+ V +SP+G L + + +++++ G D + + I H ++D+A+S+ +
Sbjct: 28 AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 83
Query: 434 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 493
++ DDKT+K+WD +G + +GH Y C + + I S S D ++ W
Sbjct: 84 -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 494 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 553
+ A + + ++ +G + S +S +G + W+ + G +T +
Sbjct: 141 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 194
Query: 554 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN 609
+ VS V F ILAA D+ +K+WD +K + L T +N + C N
Sbjct: 195 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG----HKNEKYCIFAN 246
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 54/229 (23%), Positives = 106/229 (46%), Gaps = 20/229 (8%)
Query: 760 QPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPP 818
+P + +F + T +AV S N +L S+S +I ++ K TI
Sbjct: 13 KPNYALKFTLAGHT-----KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH 67
Query: 819 SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILV 878
+ +A++ D+N++ DD T+ I++ S + + L+GHS V F+ N++V
Sbjct: 68 KLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 126
Query: 879 SSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETH---L 935
S D + +WDV +T + L+T + + + + F++D + L+V ++
Sbjct: 127 SGSFDESVRIWDV-----KTGKCLKT---LPAHSDPVSAVHFNRDGS--LIVSSSYDGLC 176
Query: 936 AIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 984
I++ CLK + P+S FS + + + + +D TL + + S
Sbjct: 177 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 225
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/201 (21%), Positives = 81/201 (40%), Gaps = 27/201 (13%)
Query: 799 GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL 858
G S ++ + T+ + +S+ F+P + +A D I I+ A + +
Sbjct: 6 GRGSEFVKPNYALKFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTI 64
Query: 859 EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVD-GWGIQTCRSLQTPDGVMTLAPSETH 917
GH ++ + +S N+LVS+ D + +WDV G ++T + P
Sbjct: 65 SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP---- 120
Query: 918 IQFHKDQTRFLLV--HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD 975
Q+ ++ + + I++ + CLK P S P+S F+ D ++ +S D
Sbjct: 121 ------QSNLIVSGSFDESVRIWDVKTGKCLKT-LPAHSDPVSAVHFNRDGSLIVSSSYD 173
Query: 976 GTLSIHEASNLEVQCRILSTA 996
G CRI TA
Sbjct: 174 GL------------CRIWDTA 182
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 47/216 (21%), Positives = 85/216 (39%), Gaps = 41/216 (18%)
Query: 304 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKL--------------FIR 349
+TL S+ +F+P Q L++ G+ +WDV +G+ L F R
Sbjct: 104 KTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 162
Query: 350 N------------FKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQ 397
+ ++WD + L L+ D V+ V +SP+G + A + ++
Sbjct: 163 DGSLIVSSSYDGLCRIWDTASGQCL--KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLK 220
Query: 398 LYAYHGGSDARQQLEIDAHVGNVND-----LAFSAPCKQISVITCGDDKTIKVWDAVTGS 452
L+ Y G + + G+ N+ FS + +++ +D + +W+ T
Sbjct: 221 LWDYSKGKCLK------TYTGHKNEKYCIFANFSVTGGKW-IVSGSEDNLVYIWNLQTKE 273
Query: 453 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIK 488
+GH V S H ENI ++ D IK
Sbjct: 274 IVQKLQGHTDVVISTACHPTENIIASAALENDKTIK 309
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 26/46 (56%)
Query: 835 IAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSS 880
I G +D+ + I+N ++ E++ KL+GH+ V NI+ S+
Sbjct: 255 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 300
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/236 (23%), Positives = 108/236 (45%), Gaps = 17/236 (7%)
Query: 374 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 433
+V+ V +SP+G L + + +++++ G D + + I H ++D+A+S+ +
Sbjct: 28 AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 83
Query: 434 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 493
++ DDKT+K+WD +G + +GH Y C + + I S S D ++ W
Sbjct: 84 -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 494 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 553
+ A + + ++ +G + S +S +G + W+ + G +T +
Sbjct: 141 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 194
Query: 554 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN 609
+ VS V F ILAA D+ +K+WD +K + L T +N + C N
Sbjct: 195 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG----HKNEKYCIFAN 246
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 54/229 (23%), Positives = 106/229 (46%), Gaps = 20/229 (8%)
Query: 760 QPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPP 818
+P + +F + T +AV S N +L S+S +I ++ K TI
Sbjct: 13 KPNYALKFTLAGHT-----KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH 67
Query: 819 SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILV 878
+ +A++ D+N++ DD T+ I++ S + + L+GHS V F+ N++V
Sbjct: 68 KLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 126
Query: 879 SSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETH---L 935
S D + +WDV +T + L+T + + + + F++D + L+V ++
Sbjct: 127 SGSFDESVRIWDV-----KTGKCLKT---LPAHSDPVSAVHFNRDGS--LIVSSSYDGLC 176
Query: 936 AIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 984
I++ CLK + P+S FS + + + + +D TL + + S
Sbjct: 177 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 225
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/201 (21%), Positives = 81/201 (40%), Gaps = 27/201 (13%)
Query: 799 GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL 858
G S ++ + T+ + +S+ F+P + +A D I I+ A + +
Sbjct: 6 GRGSEFVKPNYALKFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTI 64
Query: 859 EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVD-GWGIQTCRSLQTPDGVMTLAPSETH 917
GH ++ + +S N+LVS+ D + +WDV G ++T + P
Sbjct: 65 SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP---- 120
Query: 918 IQFHKDQTRFLLV--HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD 975
Q+ ++ + + I++ + CLK P S P+S F+ D ++ +S D
Sbjct: 121 ------QSNLIVSGSFDESVRIWDVKTGKCLKT-LPAHSDPVSAVHFNRDGSLIVSSSYD 173
Query: 976 GTLSIHEASNLEVQCRILSTA 996
G CRI TA
Sbjct: 174 GL------------CRIWDTA 182
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 89/222 (40%), Gaps = 43/222 (19%)
Query: 304 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKL--------------FIR 349
+TL S+ +F+P Q L++ G+ +WDV +G+ L F R
Sbjct: 104 KTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 162
Query: 350 N------------FKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQ 397
+ ++WD A KT L+ D V+ V +SP+G + A + ++
Sbjct: 163 DGSLIVSSSYDGLCRIWDT-ASGQCLKT-LIDDDNPPVSFVKFSPNGKYILAATLDNTLK 220
Query: 398 LYAYHGGSDARQQLEIDAHVGNVND-----LAFSAPCKQISVITCGDDKTIKVWDAVTGS 452
L+ Y G + + G+ N+ FS + +++ +D + +W+ T
Sbjct: 221 LWDYSKGKCLK------TYTGHKNEKYCIFANFSVTGGKW-IVSGSEDNLVYIWNLQTKE 273
Query: 453 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS 494
+GH V S H ENI ++ D IK LY S
Sbjct: 274 IVQKLQGHTDVVISTACHPTENIIASAALENDKTIK--LYKS 313
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 26/46 (56%)
Query: 835 IAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSS 880
I G +D+ + I+N ++ E++ KL+GH+ V NI+ S+
Sbjct: 255 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 300
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 62/263 (23%), Positives = 119/263 (45%), Gaps = 24/263 (9%)
Query: 374 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 433
+V+ V +SP+G L + + +++++ G D + + I H ++D+A+S+ +
Sbjct: 28 AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 83
Query: 434 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 493
++ DDKT+K+WD +G + +GH Y C + + I S S D ++ W
Sbjct: 84 -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 494 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 553
+ A + + ++ +G + S +S +G + W+ + G +T +
Sbjct: 141 TGMCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 194
Query: 554 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN---- 609
+ VS V F ILAA D+ +K+WD +K + L T +N + C N
Sbjct: 195 NPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTG----HKNEKYCIFANFSVT 250
Query: 610 -GTLLAVIANENRIKI--LETPE 629
G + + +N + I L+T E
Sbjct: 251 GGKWIVSGSEDNMVYIWNLQTKE 273
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/242 (22%), Positives = 107/242 (44%), Gaps = 22/242 (9%)
Query: 748 TEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGG-VISLYIV 806
+ + T+ P +P + F + T +AV S N +L S+S +I ++
Sbjct: 1 SSSATQSKPTPVKPNYALMFTLAGHT-----KAVSSVKFSPNGEWLASSSADKLIKIWGA 55
Query: 807 MTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVT 866
K TI + +A++ D+N++ DD T+ I++ S + + L+GHS V
Sbjct: 56 YDGKFEKTISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF 114
Query: 867 GLVFSDALNILVSSGGDAQIFVWDVD-GWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQT 925
F+ N++VS D + +WDV G ++T + P + + F++D +
Sbjct: 115 CCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDP---------VSAVHFNRDGS 165
Query: 926 RFLLVHETH---LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHE 982
L+V ++ I++ CLK + P+S FS + + + + +D L + +
Sbjct: 166 --LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWD 223
Query: 983 AS 984
S
Sbjct: 224 YS 225
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/190 (22%), Positives = 79/190 (41%), Gaps = 25/190 (13%)
Query: 809 FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGL 868
+ + T+ + +S+ F+P + +A D I I+ A + + GH ++ +
Sbjct: 16 YALMFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 74
Query: 869 VFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL 928
+S N+LVS+ D + +WDV + + L+T G + Q+ +
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDV-----SSGKCLKTLKG----HSNYVFCCNFNPQSNLI 125
Query: 929 LV--HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 986
+ + + I++ + CLK P S P+S F+ D ++ +S DG
Sbjct: 126 VSGSFDESVRIWDVKTGMCLKT-LPAHSDPVSAVHFNRDGSLIVSSSYDGL--------- 175
Query: 987 EVQCRILSTA 996
CRI TA
Sbjct: 176 ---CRIWDTA 182
Score = 35.0 bits (79), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 49/221 (22%), Positives = 86/221 (38%), Gaps = 41/221 (18%)
Query: 304 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKL--------------FIR 349
+TL S+ +F+P Q L++ G+ +WDV +G L F R
Sbjct: 104 KTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNR 162
Query: 350 N------------FKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQ 397
+ ++WD + L L+ D V+ V +SP+G + A + ++
Sbjct: 163 DGSLIVSSSYDGLCRIWDTASGQCL--KTLIDDDNPPVSFVKFSPNGKYILAATLDNDLK 220
Query: 398 LYAYHGGSDARQQLEIDAHVGNVND-----LAFSAPCKQISVITCGDDKTIKVWDAVTGS 452
L+ Y G + + G+ N+ FS + +++ +D + +W+ T
Sbjct: 221 LWDYSKGKCLK------TYTGHKNEKYCIFANFSVTGGKW-IVSGSEDNMVYIWNLQTKE 273
Query: 453 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 493
+GH V S H ENI ++ D IK W D
Sbjct: 274 IVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 314
Score = 35.0 bits (79), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 835 IAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSG--GDAQIFVWDVD 892
I G +D+ + I+N ++ E++ KL+GH+ V NI+ S+ D I +W D
Sbjct: 255 IVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 314
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 62/125 (49%), Gaps = 19/125 (15%)
Query: 783 CFALSKNDAYLFSASGGVISLYIVMTF-------KTILTIMPPSPTATSLAFNPHDNNVI 835
C K A + ASGG ++V+ K + + + +A+ PH++NVI
Sbjct: 40 CAVNPKFMALIXEASGG--GAFLVLPLGKTGRVDKNVPLVXGHTAPVLDIAWXPHNDNVI 97
Query: 836 AIGMDDSTILIYNARSS-------EVISKLEGHSKRVTGLV--FSDALNILVSSGGDAQI 886
A G +D T++++ E + LEGH+KRV G+V A N+L+S+G D I
Sbjct: 98 ASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRV-GIVAWHPTAQNVLLSAGXDNVI 156
Query: 887 FVWDV 891
VWDV
Sbjct: 157 LVWDV 161
Score = 33.5 bits (75), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 564 TAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK 623
TA++ +L+AG D+VI +WD+ + T+ + ++++G L+ + R++
Sbjct: 142 TAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVR 201
Query: 624 ILETPESNSVDA 635
++E P +V A
Sbjct: 202 VIE-PRKGTVVA 212
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 62/125 (49%), Gaps = 19/125 (15%)
Query: 783 CFALSKNDAYLFSASGGVISLYIVMTF-------KTILTIMPPSPTATSLAFNPHDNNVI 835
C K A + ASGG ++V+ K + + + +A+ PH++NVI
Sbjct: 40 CAVNPKFMALICEASGG--GAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVI 97
Query: 836 AIGMDDSTILIYNARSS-------EVISKLEGHSKRVTGLV--FSDALNILVSSGGDAQI 886
A G +D T++++ E + LEGH+KRV G+V A N+L+S+G D I
Sbjct: 98 ASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRV-GIVAWHPTAQNVLLSAGCDNVI 156
Query: 887 FVWDV 891
VWDV
Sbjct: 157 LVWDV 161
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 564 TAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK 623
TA++ +L+AG D+VI +WD+ + T+ + ++++G L+ + R++
Sbjct: 142 TAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVR 201
Query: 624 ILETPESNSVDA 635
++E P +V A
Sbjct: 202 VIE-PRKGTVVA 212
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 123/624 (19%), Positives = 229/624 (36%), Gaps = 111/624 (17%)
Query: 367 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFS 426
+VR +V +S DG + + +Q++ G + L+I AH V AFS
Sbjct: 617 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETG---EKLLDIKAHEDEVLCCAFS 673
Query: 427 APCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSI-SVDG 485
+ I+ TC DK +K+WD+ TG ++++ H V + C ++ H + + S D
Sbjct: 674 SDDSYIA--TCSADKKVKIWDSATGKLVHTYDEHSEQV-NCCHFTNKSNHLLLATGSNDF 730
Query: 486 KIKAWLY------------------------DSLGARVDYDAP-GLGCTRMA---YSANG 517
+K W D L A D L R A S N
Sbjct: 731 FLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINV 790
Query: 518 RRLF---------------SCGTSKEGESFLVEWN--------ESEGAIKRTYQGLQLQH 554
+R F C S +G+ +V + G + + G H
Sbjct: 791 KRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTG---HH 847
Query: 555 NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA 614
+++ F + A + +++W+++ L D G L + F+ +G+
Sbjct: 848 STIQYCDFSPYDHLAVIALSQYCVELWNID--SRLKVADCRGHLSWVHGVMFSPDGSSFL 905
Query: 615 VIANENRIKILETPESNSVDAAGVLSDNL------RKLSVNPISTVTGAG-IANGSVSVN 667
+++ I++ ET + ++A VL + + V + + G IA + ++
Sbjct: 906 TASDDQTIRVWETKKVCK-NSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQID 964
Query: 668 EDPKEDV-----KPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISR-LTYNNG 721
P+ V P + A + + P+ + + S V K R + +
Sbjct: 965 YLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPN---NRVFSSGVGHKKAVRHIQFTAD 1021
Query: 722 GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAV 781
G+ + + + + V +W W D ++ H QE V
Sbjct: 1022 GKTLISSSEDSVIQVWNWQTGDY-------------VFLQAH--------------QETV 1054
Query: 782 PCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD 841
F L ++ L + G + ++ V+T + T S A + D + D
Sbjct: 1055 KDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISS-DATKFSSTSAD 1113
Query: 842 STILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGD-AQIFVWDV-DGWGIQTC 899
T I++ + +L+GH+ V FS IL+++G D +I +W+V DG + +C
Sbjct: 1114 KTAKIWSFDLLSPLHELKGHNGCVRCSAFS-LDGILLATGDDNGEIRIWNVSDGQLLHSC 1172
Query: 900 RSLQTPDGVMTLAPSETHIQFHKD 923
+ +G T T + F D
Sbjct: 1173 APISVEEGTATHGGWVTDVCFSPD 1196
Score = 36.6 bits (83), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 45/112 (40%), Gaps = 12/112 (10%)
Query: 818 PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNIL 877
P + +PH +A G +D I I ++ V S GH K V + F+ L
Sbjct: 967 PEAQVSCCCLSPH-LEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTL 1025
Query: 878 VSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL 929
+SS D+ I VW+ W QT D V A ET F Q LL
Sbjct: 1026 ISSSEDSVIQVWN---W--------QTGDYVFLQAHQETVKDFRLLQDSRLL 1066
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 122/624 (19%), Positives = 231/624 (37%), Gaps = 111/624 (17%)
Query: 367 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFS 426
+VR +V +S DG + + +Q++ G + L+I AH V AFS
Sbjct: 610 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETG---EKLLDIKAHEDEVLCCAFS 666
Query: 427 APCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSI-SVDG 485
+ I+ TC DK +K+WD+ TG ++++ H V + C ++ H + + S D
Sbjct: 667 SDDSYIA--TCSADKKVKIWDSATGKLVHTYDEHSEQV-NCCHFTNKSNHLLLATGSNDF 723
Query: 486 KIKAWLYDSLGAR---------VDY-----------DAPGLGCTRM--AYSANGR----- 518
+K W + R V++ G R+ SAN R
Sbjct: 724 FLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINV 783
Query: 519 -RLF---------------SCGTSKEGESFLVEWN--------ESEGAIKRTYQGLQLQH 554
R F C S +G+ +V + G + + G H
Sbjct: 784 KRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTG---HH 840
Query: 555 NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA 614
+++ F + A + +++W+++ L D G L + F+ +G+
Sbjct: 841 STIQYCDFSPYDHLAVIALSQYCVELWNID--SRLKVADCRGHLSWVHGVMFSPDGSSFL 898
Query: 615 VIANENRIKILETPESNSVDAAGVLSDNL------RKLSVNPISTVTGAG-IANGSVSVN 667
+++ I++ ET + ++A VL + + V + + G IA + ++
Sbjct: 899 TASDDQTIRVWETKKVCK-NSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQID 957
Query: 668 EDPKEDV-----KPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISR-LTYNNG 721
P+ V P + A + + P+ + + S V K R + +
Sbjct: 958 YLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPN---NRVFSSGVGHKKAVRHIQFTAD 1014
Query: 722 GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAV 781
G+ + + + + V +W W D ++ H QE V
Sbjct: 1015 GKTLISSSEDSVIQVWNWQTGDY-------------VFLQAH--------------QETV 1047
Query: 782 PCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD 841
F L ++ L + G + ++ V+T + T S A + D + D
Sbjct: 1048 KDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISS-DATKFSSTSAD 1106
Query: 842 STILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGD-AQIFVWDV-DGWGIQTC 899
T I++ + +L+GH+ V FS IL+++G D +I +W+V DG + +C
Sbjct: 1107 KTAKIWSFDLLSPLHELKGHNGCVRCSAFS-LDGILLATGDDNGEIRIWNVSDGQLLHSC 1165
Query: 900 RSLQTPDGVMTLAPSETHIQFHKD 923
+ +G T T + F D
Sbjct: 1166 APISVEEGTATHGGWVTDVCFSPD 1189
Score = 36.6 bits (83), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 45/112 (40%), Gaps = 12/112 (10%)
Query: 818 PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNIL 877
P + +PH +A G +D I I ++ V S GH K V + F+ L
Sbjct: 960 PEAQVSCCCLSPH-LEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTL 1018
Query: 878 VSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL 929
+SS D+ I VW+ W QT D V A ET F Q LL
Sbjct: 1019 ISSSEDSVIQVWN---W--------QTGDYVFLQAHQETVKDFRLLQDSRLL 1059
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 89/194 (45%), Gaps = 24/194 (12%)
Query: 440 DKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG--- 496
D T+++WD TG+ T F GH V S+ + +N I S S D IK W ++LG
Sbjct: 107 DGTLRLWDLTTGTTTRRFVGHTKDVLSV-AFSSDNRQ-IVSGSRDKTIKLW--NTLGVCK 162
Query: 497 --ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQH 554
+ + + + C R + +++ + SCG K + WN + +K + G
Sbjct: 163 YTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDK----LVKVWNLANCKLKTNHIGHTGYL 218
Query: 555 NSVSVVHFDTAKDQILAA--GDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTL 612
N+V+V + D L A G D +WD+N+ + L T+D G + +CF+ N
Sbjct: 219 NTVTV-----SPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINA---LCFSPNRYW 270
Query: 613 LAVIANENRIKILE 626
L A IKI +
Sbjct: 271 LCA-ATGPSIKIWD 283
Score = 36.2 bits (82), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 89/211 (42%), Gaps = 17/211 (8%)
Query: 375 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISV 434
V+ VV S DG ++L+ G+ R+ + H +V +AFS+ +QI
Sbjct: 89 VSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFV---GHTKDVLSVAFSSDNRQI-- 143
Query: 435 ITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIH--FIFSISVDGKIKAWLY 492
++ DKTIK+W+ + G Y+ + + C N I S D +K W
Sbjct: 144 VSGSRDKTIKLWNTL-GVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL 202
Query: 493 DSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL 552
+ + ++ + S +G S G K+G++ L W+ +EG T G +
Sbjct: 203 ANCKLKTNHIGHTGYLNTVTVSPDGSLCASGG--KDGQAML--WDLNEGKHLYTLDGGDI 258
Query: 553 QHNSVSVVHFDTAKDQILAAGDDHVIKIWDM 583
++ + F + + AA IKIWD+
Sbjct: 259 ----INALCFSPNRYWLCAATGPS-IKIWDL 284
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 89/194 (45%), Gaps = 24/194 (12%)
Query: 440 DKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG--- 496
D T+++WD TG+ T F GH V S+ + +N I S S D IK W ++LG
Sbjct: 84 DGTLRLWDLTTGTTTRRFVGHTKDVLSV-AFSSDNRQ-IVSGSRDKTIKLW--NTLGVCK 139
Query: 497 --ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQH 554
+ + + + C R + +++ + SCG K + WN + +K + G
Sbjct: 140 YTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDK----LVKVWNLANCKLKTNHIGHTGYL 195
Query: 555 NSVSVVHFDTAKDQILAA--GDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTL 612
N+V+V + D L A G D +WD+N+ + L T+D G + +CF+ N
Sbjct: 196 NTVTV-----SPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINA---LCFSPNRYW 247
Query: 613 LAVIANENRIKILE 626
L A IKI +
Sbjct: 248 LCA-ATGPSIKIWD 260
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 89/211 (42%), Gaps = 17/211 (8%)
Query: 375 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISV 434
V+ VV S DG ++L+ G+ R+ + H +V +AFS+ +QI
Sbjct: 66 VSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFV---GHTKDVLSVAFSSDNRQI-- 120
Query: 435 ITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIH--FIFSISVDGKIKAWLY 492
++ DKTIK+W+ + G Y+ + + C N I S D +K W
Sbjct: 121 VSGSRDKTIKLWNTL-GVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL 179
Query: 493 DSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL 552
+ + ++ + S +G S G K+G++ L W+ +EG T G +
Sbjct: 180 ANCKLKTNHIGHTGYLNTVTVSPDGSLCASGG--KDGQAML--WDLNEGKHLYTLDGGDI 235
Query: 553 QHNSVSVVHFDTAKDQILAAGDDHVIKIWDM 583
++ + F + + AA IKIWD+
Sbjct: 236 ----INALCFSPNRYWLCAATGPS-IKIWDL 261
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 71/315 (22%), Positives = 124/315 (39%), Gaps = 49/315 (15%)
Query: 298 FPKTVAQTLIEGSSSPMS-MDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDI 356
P+ + + G SP++ + FHPV ++++ + +WD +G F R K
Sbjct: 95 IPRPPEKYALSGHRSPVTRVIFHPV-FSVMVSASEDATIKVWDYETGD--FERTLK---- 147
Query: 357 GACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAH 416
SV + + G LL + ++L+ + G R + H
Sbjct: 148 -------------GHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRT---MHGH 191
Query: 417 VGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIH 476
NV+ ++ I ++ DKTIK+W+ TG +F GH V + P+ ++
Sbjct: 192 DHNVSSVSIMPNGDHI--VSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPN--QDGT 247
Query: 477 FIFSISVDGKIKAWLYDSLGARVDYDAPG--LGCTRMA----YSANGRRLFSCGTSKEGE 530
I S S D ++ W+ + + + + C A YS+ S T K G+
Sbjct: 248 LIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGS-ETKKSGK 306
Query: 531 --SFLVE---------WNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIK 579
FL+ W+ S G T G N V V F + IL+ DD ++
Sbjct: 307 PGPFLLSGSRDKTIKMWDVSTGMCLMTLVG---HDNWVRGVLFHSGGKFILSCADDKTLR 363
Query: 580 IWDMNKVQLLTTIDA 594
+WD + + T++A
Sbjct: 364 VWDYKNKRCMKTLNA 378
Score = 36.6 bits (83), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 6/99 (6%)
Query: 823 TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGG 882
T + F+P +V+ +D+TI +++ + + L+GH+ V + F + +L S
Sbjct: 112 TRVIFHP-VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSA 170
Query: 883 DAQIFVWDVDGWGIQTCRSLQTPD---GVMTLAPSETHI 918
D I +WD G + R++ D +++ P+ HI
Sbjct: 171 DMTIKLWDFQ--GFECIRTMHGHDHNVSSVSIMPNGDHI 207
Score = 34.7 bits (78), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 434 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAW 490
+++C DDKT++VWD + H V SL H + ++ + SVD +K W
Sbjct: 353 ILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFH--KTAPYVVTGSVDQTVKVW 407
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 25/53 (47%)
Query: 838 GMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 890
G D TI +++ + + L GH V G++F ++S D + VWD
Sbjct: 314 GSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWD 366
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 858 LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVD 892
L GH VT ++F +++VS+ DA I VWD +
Sbjct: 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYE 138
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Query: 814 TIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDA 873
T+ + + ++F+ H ++A D TI +++ + E I + GH V+ +
Sbjct: 145 TLKGHTDSVQDISFD-HSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPN 203
Query: 874 LNILVSSGGDAQIFVWDVD-GWGIQT 898
+ +VS+ D I +W+V G+ ++T
Sbjct: 204 GDHIVSASRDKTIKMWEVQTGYCVKT 229
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 69/288 (23%), Positives = 117/288 (40%), Gaps = 57/288 (19%)
Query: 330 TNVGDTG-LWDVNSGQKLFI-----RNFKVW--DIGAC--SMLFKTALVRDPGVSVNRVV 379
T VG TG +W + I R KVW + G C ++ T+ VR + RVV
Sbjct: 154 TLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVV 213
Query: 380 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD 439
+ L V + L+ G HV V + + V++
Sbjct: 214 SGSRDATLRVWDIETGQCLHVLMG------------HVAAVRCVQYDGR----RVVSGAY 257
Query: 440 DKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV 499
D +KVWD T + ++ +GH VYSL + IH + S S+D I+ W
Sbjct: 258 DFMVKVWDPETETCLHTLQGHTNRVYSL---QFDGIHVV-SGSLDTSIRVW--------- 304
Query: 500 DYDAPGLGCTRMAYSANGRRLFSCG--------TSKEGESFLVEWNESEGAIKRTYQGLQ 551
D C ++ G + + G S +S + W+ G +T QG
Sbjct: 305 --DVETGNCI---HTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPN 359
Query: 552 LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK---VQLLTTIDAGG 596
++V+ + F+ K+ ++ + DD +K+WD+ ++ L T+++GG
Sbjct: 360 KHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGG 405
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 54/124 (43%), Gaps = 16/124 (12%)
Query: 809 FKTILTIMPPSPTATSLAFNPHDNNVIAIGMD---------DSTILIYNARSSEVISKLE 859
+ ++ + P H N V ++ D D++I +++ + I L
Sbjct: 257 YDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLT 316
Query: 860 GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQ 919
GH +G+ D NILVS D+ + +WD I+T + LQT G + T +Q
Sbjct: 317 GHQSLTSGMELKD--NILVSGNADSTVKIWD-----IKTGQCLQTLQGPNKHQSAVTCLQ 369
Query: 920 FHKD 923
F+K+
Sbjct: 370 FNKN 373
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 60/253 (23%), Positives = 99/253 (39%), Gaps = 54/253 (21%)
Query: 415 AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKEN 474
H G V +S+ + +I+ D+T+KVW+A TG ++ GH + V + H K
Sbjct: 157 GHTGGV----WSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKR- 211
Query: 475 IHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV 534
+ S S D ++ W D + + G +GRR+ S F+V
Sbjct: 212 ---VVSGSRDATLRVW--DIETGQCLHVLMGHVAAVRCVQYDGRRVVS-----GAYDFMV 261
Query: 535 E-WNESEGAIKRTYQG-----LQLQHNSVSVV--HFDTA--------------------- 565
+ W+ T QG LQ + + VV DT+
Sbjct: 262 KVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSL 321
Query: 566 ------KDQILAAGD-DHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 618
KD IL +G+ D +KIWD+ Q L T+ G ++ C N + ++
Sbjct: 322 TSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQ-GPNKHQSAVTCLQFNKNFVITSSD 380
Query: 619 ENRIKI--LETPE 629
+ +K+ L+T E
Sbjct: 381 DGTVKLWDLKTGE 393
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 64/149 (42%), Gaps = 15/149 (10%)
Query: 434 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 493
+++ DD T+KVW AVTG + GH V+S ++NI I S S D +K W +
Sbjct: 132 IVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWS--SQMRDNI--IISGSTDRTLKVWNAE 187
Query: 494 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 553
+ + G T + +R+ S ++ L W+ G G
Sbjct: 188 T--GECIHTLYGHTSTVRCMHLHEKRVV----SGSRDATLRVWDIETGQCLHVLMG---H 238
Query: 554 HNSVSVVHFDTAKDQILAAGDDHVIKIWD 582
+V V +D + +++ D ++K+WD
Sbjct: 239 VAAVRCVQYDGRR--VVSGAYDFMVKVWD 265
Score = 38.5 bits (88), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 832 NNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDV 891
+N+I G D T+ ++NA + E I L GH+ V + + +VS DA + VWD+
Sbjct: 169 DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKR--VVSGSRDATLRVWDI 226
Query: 892 D 892
+
Sbjct: 227 E 227
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 46/94 (48%), Gaps = 8/94 (8%)
Query: 801 ISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG 860
I ++ V T I T+ + + +N++ G DST+ I++ ++ + + L+G
Sbjct: 301 IRVWDVETGNCIHTLTGHQSLTSGMELK---DNILVSGNADSTVKIWDIKTGQCLQTLQG 357
Query: 861 ---HSKRVTGLVFSDALNILVSSGGDAQIFVWDV 891
H VT L F+ N +++S D + +WD+
Sbjct: 358 PNKHQSAVTCLQFNK--NFVITSSDDGTVKLWDL 389
Score = 34.3 bits (77), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 6/62 (9%)
Query: 833 NVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDAL--NILVSSGGDAQIFVWD 890
N I G DD+T+ +++A + + + L GH TG V+S + NI++S D + VW+
Sbjct: 130 NRIVSGSDDNTLKVWSAVTGKCLRTLVGH----TGGVWSSQMRDNIIISGSTDRTLKVWN 185
Query: 891 VD 892
+
Sbjct: 186 AE 187
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 46.6 bits (109), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 59/125 (47%), Gaps = 7/125 (5%)
Query: 367 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFS 426
+VR +V +S DG + + +Q++ G + LEI AH V AFS
Sbjct: 616 VVRPHTDAVYHACFSEDGQRIASCGADKTLQVFKAETG---EKLLEIKAHEDEVLCCAFS 672
Query: 427 APCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSI-SVDG 485
+ I+ TC DK +K+W+++TG ++++ H V + C + H + + S D
Sbjct: 673 TDDRFIA--TCSVDKKVKIWNSMTGELVHTYDEHSEQV-NCCHFTNSSHHLLLATGSSDC 729
Query: 486 KIKAW 490
+K W
Sbjct: 730 FLKLW 734
Score = 38.1 bits (87), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 94/441 (21%), Positives = 158/441 (35%), Gaps = 78/441 (17%)
Query: 512 AYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA 571
+S +G+R+ SCG K + F E E IK + V F T I
Sbjct: 628 CFSEDGQRIASCGADKTLQVFKAETGEKLLEIKA-------HEDEVLCCAFSTDDRFIAT 680
Query: 572 AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT---LLAVIANENRIKILETP 628
D +KIW+ +L+ T D E C N + LLA +++ +K+ +
Sbjct: 681 CSVDKKVKIWNSMTGELVHTYDEHS---EQVNCCHFTNSSHHLLLATGSSDCFLKLWDLN 737
Query: 629 E----------SNSVDAAGVLSDN--LRKLSVNPISTVTGAGIANGSVSVN--------E 668
+ +NSV+ D+ L S + + A AN S+N E
Sbjct: 738 QKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFFLNLE 797
Query: 669 DPKEDVK------------PEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRL 716
DP+ED++ I V A+NK +F LL ++ S +
Sbjct: 798 DPQEDMEVIVKCCSWSADGARIMVAAKNK------IFLFDIHTSGLL--GEIHTGHHSTI 849
Query: 717 TYNN----GGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDT 772
Y + A+ AL+ V L R+ + + V ++ P G F+ +
Sbjct: 850 QYCDFSPQNHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPD-GSSFLT--S 906
Query: 773 TDSNSQEAVPCFALSKNDAYLFSASGGVI---SLYIVMTFKTILTIM-----------PP 818
+D + + KN A + V+ + +V+ I +
Sbjct: 907 SDDQTIRLWETKKVCKNSAVMLKQEVDVVFQENEVMVLAVDHIRRLQLINGRTGQIDYLT 966
Query: 819 SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILV 878
+ +PH IA G ++ I I ++ + H K V + F+ L+
Sbjct: 967 EAQVSCCCLSPH-LQYIAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQFTADEKTLI 1025
Query: 879 SSGGDAQIFVWDVDGWGIQTC 899
SS DA+I VW+ W + C
Sbjct: 1026 SSSDDAEIQVWN---WQLDKC 1043
Score = 34.7 bits (78), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 45/104 (43%), Gaps = 6/104 (5%)
Query: 440 DKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV 499
D T+KVW+ +TG++ F H V S C + + F S S D K W +D L
Sbjct: 1070 DGTVKVWNIITGNKEKDFVCHQGTVLS-CDISHDATKF-SSTSADKTAKIWSFDLLLPLH 1127
Query: 500 DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI 543
+ GC R + + L + G GE + WN S G +
Sbjct: 1128 ELRGHN-GCVRCSAFSVDSTLLATG-DDNGEIRI--WNVSNGEL 1167
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 46/231 (19%), Positives = 91/231 (39%), Gaps = 28/231 (12%)
Query: 414 DAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKE 473
D H VN F+ + + T D +K+WD + GH V + C + +
Sbjct: 702 DEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRNTMFGHTNSV-NHCRFSPD 760
Query: 474 NIHFIFSISVDGKIKAWLYDSLGAR---------VDYDAPG------LGCTRMAYSANGR 518
+ + S S DG +K W S R ++ + P + C ++SA+G
Sbjct: 761 D-KLLASCSADGTLKLWDATSANERKSINVKQFFLNLEDPQEDMEVIVKCC--SWSADGA 817
Query: 519 RLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVI 578
R+ +K FL + + S G + + G H+++ F + A + +
Sbjct: 818 RIMVAAKNK---IFLFDIHTS-GLLGEIHTG---HHSTIQYCDFSPQNHLAVVALSQYCV 870
Query: 579 KIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPE 629
++W+ + D G L + F+ +G+ +++ I++ ET +
Sbjct: 871 ELWNTDSRS--KVADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWETKK 919
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 7/69 (10%)
Query: 380 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQL-EIDAHVGNVNDLAFSAPCKQISVITCG 438
+SP L VA S++ V+L+ +D+R ++ + H+ V+ + FS S +T
Sbjct: 854 FSPQNHLAVVALSQYCVELW----NTDSRSKVADCRGHLSWVHGVMFSPDGS--SFLTSS 907
Query: 439 DDKTIKVWD 447
DD+TI++W+
Sbjct: 908 DDQTIRLWE 916
Score = 30.0 bits (66), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 15/82 (18%)
Query: 831 DNNVIAIGMDDSTILIYNARSSEVISKL-----EG---HSKRVTGLVFSDALNILVSSGG 882
D+ ++A G D+ I I+N + E++ EG H VT L FS +L+S+GG
Sbjct: 1144 DSTLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHGGWVTDLCFSPDGKMLISAGG 1203
Query: 883 DAQIFVWDVDGWGIQTCRSLQT 904
+ W + T S QT
Sbjct: 1204 -------YIKWWNVVTGESSQT 1218
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 83/205 (40%), Gaps = 23/205 (11%)
Query: 411 LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH 470
L++ H G V L ++ +S T D+T++VWD G T+ FEGH + V L
Sbjct: 156 LQLSGHDGGVWALKYAHGGILVSGST---DRTVRVWDIKKGCCTHVFEGHNSTVRCLDIV 212
Query: 471 AKENIHFIFSISVDGKIKAWLYDS------LGARVDY--------DAPGLGCTRMAYSAN 516
+NI +I + S D + W G DY + P + A+
Sbjct: 213 EYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMAS 272
Query: 517 GRRLFSCG---TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG 573
R + G S ++ L+ W+ ++ G + + +D + + ++A
Sbjct: 273 VRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSG---HTDRIYSTIYDHERKRCISAS 329
Query: 574 DDHVIKIWDMNKVQLLTTIDAGGGL 598
D I+IWD+ +L+ T+ L
Sbjct: 330 MDTTIRIWDLENGELMYTLQGHTAL 354
Score = 38.9 bits (89), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
Query: 435 ITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS 494
I+ D TI++WD G Y+ +GH A V L K F+ S + DG I+ W +
Sbjct: 326 ISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDK----FLVSAAADGSIRGWDAND 381
Query: 495 LGARVDYDAPGLGCTRMAYSAN 516
+ Y L Y ++
Sbjct: 382 YSRKFSYHHTNLSAITTFYVSD 403
Score = 37.7 bits (86), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Query: 819 SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILV 878
+ T L F ++N + G DD I +Y++ + + + +L GH V L ++ ILV
Sbjct: 122 TSVITCLQF---EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILV 177
Query: 879 SSGGDAQIFVWDV 891
S D + VWD+
Sbjct: 178 SGSTDRTVRVWDI 190
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 13/60 (21%), Positives = 32/60 (53%)
Query: 833 NVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVD 892
N++ G D+T+++++ + + L GH+ R+ ++ +S+ D I +WD++
Sbjct: 281 NIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLE 340
Score = 34.3 bits (77), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 841 DSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGW 894
D+TI I++ + E++ L+GH+ V L SD LVS+ D I WD + +
Sbjct: 331 DTTIRIWDLENGELMYTLQGHTALVGLLRLSDKF--LVSAAADGSIRGWDANDY 382
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 434 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAW 490
VIT DDK I+V+D++ GH V++L +A I + S S D ++ W
Sbjct: 135 VITGADDKMIRVYDSINKKFLLQLSGHDGGVWAL-KYAHGGI--LVSGSTDRTVRVW 188
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 35/161 (21%), Positives = 67/161 (41%), Gaps = 23/161 (14%)
Query: 434 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYS-LCPHAKENIHFIFSISVDGKIKAWLY 492
V++ D T+ VWD Y GH +YS + H ++ S S+D I+ W
Sbjct: 283 VVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKR---CISASMDTTIRIW-- 337
Query: 493 DSLGARVDYDAPG----LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ 548
D + Y G +G R++ F + +G + W+ ++ + K +Y
Sbjct: 338 DLENGELMYTLQGHTALVGLLRLSDK------FLVSAAADGS--IRGWDANDYSRKFSY- 388
Query: 549 GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLL 589
H ++S + D IL +G ++ I+++ +L+
Sbjct: 389 ----HHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLV 425
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 3/91 (3%)
Query: 824 SLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGD 883
S+ F+P D +A G +D I I++ + +++ L+GH + + L + + + LVS GD
Sbjct: 128 SVCFSP-DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGD 186
Query: 884 AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPS 914
+ +WD+ Q +L DGV T+A S
Sbjct: 187 RTVRIWDLRTG--QCSLTLSIEDGVTTVAVS 215
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 82/205 (40%), Gaps = 23/205 (11%)
Query: 411 LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH 470
L++ H G V L ++ +S T D+T++VWD G T+ FEGH + V L
Sbjct: 156 LQLSGHDGGVWALKYAHGGILVSGST---DRTVRVWDIKKGCCTHVFEGHNSTVRCLDIV 212
Query: 471 AKENIHFIFSISVDGKIKAWLYDS------LGARVDY--------DAPGLGCTRMAYSAN 516
+NI +I + S D + W G DY + P + A+
Sbjct: 213 EYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXAS 272
Query: 517 GRRLFSCG---TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG 573
R + G S ++ L+ W+ ++ G + + +D + + ++A
Sbjct: 273 VRTVSGHGNIVVSGSYDNTLIVWDVAQXKCLYILSG---HTDRIYSTIYDHERKRCISAS 329
Query: 574 DDHVIKIWDMNKVQLLTTIDAGGGL 598
D I+IWD+ +L T+ L
Sbjct: 330 XDTTIRIWDLENGELXYTLQGHTAL 354
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
Query: 435 ITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS 494
I+ D TI++WD G Y+ +GH A V L K F+ S + DG I+ W +
Sbjct: 326 ISASXDTTIRIWDLENGELXYTLQGHTALVGLLRLSDK----FLVSAAADGSIRGWDAND 381
Query: 495 LGARVDYDAPGLGCTRMAYSAN 516
+ Y L Y ++
Sbjct: 382 YSRKFSYHHTNLSAITTFYVSD 403
Score = 37.7 bits (86), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Query: 819 SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILV 878
+ T L F ++N + G DD I +Y++ + + + +L GH V L ++ ILV
Sbjct: 122 TSVITCLQF---EDNYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILV 177
Query: 879 SSGGDAQIFVWDV 891
S D + VWD+
Sbjct: 178 SGSTDRTVRVWDI 190
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 13/60 (21%), Positives = 32/60 (53%)
Query: 833 NVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVD 892
N++ G D+T+++++ + + L GH+ R+ ++ +S+ D I +WD++
Sbjct: 281 NIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLE 340
Score = 33.1 bits (74), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 841 DSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGW 894
D+TI I++ + E+ L+GH+ V L SD LVS+ D I WD + +
Sbjct: 331 DTTIRIWDLENGELXYTLQGHTALVGLLRLSDKF--LVSAAADGSIRGWDANDY 382
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 434 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAW 490
VIT DDK I+V+D++ GH V++L +A I + S S D ++ W
Sbjct: 135 VITGADDKXIRVYDSINKKFLLQLSGHDGGVWAL-KYAHGGI--LVSGSTDRTVRVW 188
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 35/161 (21%), Positives = 66/161 (40%), Gaps = 23/161 (14%)
Query: 434 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYS-LCPHAKENIHFIFSISVDGKIKAWLY 492
V++ D T+ VWD Y GH +YS + H ++ S S D I+ W
Sbjct: 283 VVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKR---CISASXDTTIRIW-- 337
Query: 493 DSLGARVDYDAPG----LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ 548
D + Y G +G R++ F + +G + W+ ++ + K +Y
Sbjct: 338 DLENGELXYTLQGHTALVGLLRLSDK------FLVSAAADGS--IRGWDANDYSRKFSY- 388
Query: 549 GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLL 589
H ++S + D IL +G ++ I+++ +L+
Sbjct: 389 ----HHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLV 425
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 72/149 (48%), Gaps = 6/149 (4%)
Query: 744 LTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVIS 802
L ++ ++ RL+ +G Q + D+ +A A S + YL + + G ++
Sbjct: 92 LPIAASSSLDAHIRLWDLENGKQIK---SIDAGPVDAW-TLAFSPDSQYLATGTHVGKVN 147
Query: 803 LYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHS 862
++ V + K ++ S+A++P D +A G D I I++ + +++ LEGH+
Sbjct: 148 IFGVESGKKEYSLDTRGKFILSIAYSP-DGKYLASGAIDGIINIFDIATGKLLHTLEGHA 206
Query: 863 KRVTGLVFSDALNILVSSGGDAQIFVWDV 891
+ L FS +LV++ D I ++DV
Sbjct: 207 MPIRSLTFSPDSQLLVTASDDGYIKIYDV 235
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 59/120 (49%), Gaps = 5/120 (4%)
Query: 781 VPCFALSKNDAYLFS-ASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGM 839
+ A S + YL S A G+I+++ + T K + T+ + SL F+P D+ ++
Sbjct: 167 ILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSP-DSQLLVTAS 225
Query: 840 DDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTC 899
DD I IY+ + + + L GH+ V + F VSS D + VWDV G +TC
Sbjct: 226 DDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDV---GTRTC 282
Score = 33.1 bits (74), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 39/175 (22%), Positives = 73/175 (41%), Gaps = 30/175 (17%)
Query: 321 VQHTLLLVGTNVGDTG--LWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRV 378
+ HTL + ++ D LWD+ +G++ I++ + A ++ F
Sbjct: 88 ISHTLPIAASSSLDAHIRLWDLENGKQ--IKSIDAGPVDAWTLAF--------------- 130
Query: 379 VWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG 438
SPD L V ++ G +++ +D + +A+S K ++ +
Sbjct: 131 --SPDSQYLATGTHVGKVNIFGVESG---KKEYSLDTRGKFILSIAYSPDGKYLA--SGA 183
Query: 439 DDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 493
D I ++D TG ++ EGH P+ SL + + + S DG IK +YD
Sbjct: 184 IDGIINIFDIATGKLLHTLEGHAMPIRSLT--FSPDSQLLVTASDDGYIK--IYD 234
Score = 30.8 bits (68), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 35/166 (21%), Positives = 66/166 (39%), Gaps = 9/166 (5%)
Query: 440 DKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV 499
D I++WD G + S + PV + + ++ + + GK+ + +S
Sbjct: 101 DAHIRLWDLENGKQIKSIDA--GPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEY 158
Query: 500 DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSV 559
D G +AYS +G+ L S + + ++ + G + T +G + S++
Sbjct: 159 SLDTRGKFILSIAYSPDGKYLASGAI----DGIINIFDIATGKLLHTLEGHAMPIRSLT- 213
Query: 560 VHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC 605
F ++ A DD IKI+D+ L T+ N C
Sbjct: 214 --FSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFC 257
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 61/218 (27%), Positives = 90/218 (41%), Gaps = 29/218 (13%)
Query: 375 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISV 434
V VV S DG ++L+ G R+ + H +V +AFS +QI
Sbjct: 433 VEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFV---GHTKDVLSVAFSLDNRQI-- 487
Query: 435 ITCGDDKTIKVWDAVTGSR-TYSFEGHGAPVYSLCPHAKENI--HFIFSISVDGKIKAW- 490
++ D+TIK+W+ + + T S G G + C N I S S D +K W
Sbjct: 488 VSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWN 547
Query: 491 -----LYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR 545
L +L Y + +A S +G S G K+G L W+ +EG K+
Sbjct: 548 LSNCKLRSTLAGHTGY------VSTVAVSPDGSLCASGG--KDGVVLL--WDLAEG--KK 595
Query: 546 TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM 583
Y L+ NSV + L A +H IKIWD+
Sbjct: 596 LYS---LEANSVIHALCFSPNRYWLCAATEHGIKIWDL 630
Score = 36.6 bits (83), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 83/201 (41%), Gaps = 23/201 (11%)
Query: 440 DKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG-AR 498
D +++WD G T F GH V S+ + +N I S S D IK W ++LG +
Sbjct: 451 DGELRLWDLAAGVSTRRFVGHTKDVLSVA-FSLDNRQ-IVSASRDRTIKLW--NTLGECK 506
Query: 499 VDYDAPGLG------CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL 552
G G C R + + + S K + WN S ++ T G
Sbjct: 507 YTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKT----VKVWNLSNCKLRSTLAG--- 559
Query: 553 QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTL 612
VS V + G D V+ +WD+ + + L +++A + +CF+ N
Sbjct: 560 HTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHA---LCFSPNRYW 616
Query: 613 LAVIANENRIKILETPESNSV 633
L A E+ IKI + ES S+
Sbjct: 617 LCA-ATEHGIKIWDL-ESKSI 635
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 28/51 (54%)
Query: 841 DSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDV 891
D T+ ++N + ++ S L GH+ V+ + S ++ S G D + +WD+
Sbjct: 540 DKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDL 590
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 59/137 (43%), Gaps = 25/137 (18%)
Query: 405 SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 464
S+ + + + H G V+ +A S P + + G D + +WD G + YS E + +
Sbjct: 549 SNCKLRSTLAGHTGYVSTVAVS-PDGSLCA-SGGKDGVVLLWDLAEGKKLYSLEANSV-I 605
Query: 465 YSLCPHAKENIHFIFSISVDGKIKAWLYDSL-------------GARVDYDAPG------ 505
++LC N +++ + + G IK W +S + D P
Sbjct: 606 HALC--FSPNRYWLCAATEHG-IKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKV 662
Query: 506 LGCTRMAYSANGRRLFS 522
+ CT + +SA+G LFS
Sbjct: 663 IYCTSLNWSADGSTLFS 679
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 43.1 bits (100), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 57/118 (48%), Gaps = 9/118 (7%)
Query: 783 CFALSKNDA-YLFSASGGVISLYIVMT------FKTILTIMPPSPTATSLAFNPHDNNVI 835
C+ L+ N A L ++ GG + I T K++L+ T +A++P N +
Sbjct: 19 CWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLS-EGHQRTVRKVAWSPCGNYLA 77
Query: 836 AIGMDDST-ILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVD 892
+ D +T I N E ++ LEGH V + ++ + N+L + D ++VW+VD
Sbjct: 78 SASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVD 135
Score = 35.8 bits (81), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 36/182 (19%), Positives = 77/182 (42%), Gaps = 25/182 (13%)
Query: 504 PGLGCTRMAYSANGRRLFSCGTSK-------EGESFLVEWNESEGAIKRTYQGLQLQHNS 556
P C +A++ G L SCG + EG+S++ + SEG +
Sbjct: 15 PDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEG-----------HQRT 63
Query: 557 VSVVHFDTAKDQILAAGDDHVIKIWDMNK--VQLLTTIDAGGGLPENPRICFNKNGTLLA 614
V V + + + +A D IW N+ + +TT++ G E + + +G LLA
Sbjct: 64 VRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLE--GHENEVKSVAWAPSGNLLA 121
Query: 615 VIANENRIKILETPESNSVDAAGVL---SDNLRKLSVNPISTVTGAGIANGSVSVNEDPK 671
+ + + + E E + + VL + +++ + +P + + + +V + + +
Sbjct: 122 TCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEE 181
Query: 672 ED 673
+D
Sbjct: 182 DD 183
Score = 35.0 bits (79), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 375 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISV 434
V VVW P LL A V+LY D ++ H V LAF ++++
Sbjct: 153 VKHVVWHPSQELLASASYDDTVKLYREEE-DDWVCCATLEGHESTVWSLAFDPSGQRLA- 210
Query: 435 ITCGDDKTIKVW 446
+C DD+T+++W
Sbjct: 211 -SCSDDRTVRIW 221
Score = 34.7 bits (78), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 3/99 (3%)
Query: 349 RNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDAR 408
R ++W S + K+ L +V +V WSP G+ L A ++ + D
Sbjct: 38 RRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKN-QDDFE 96
Query: 409 QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 447
++ H V +A+ AP + + TC DK++ VW+
Sbjct: 97 CVTTLEGHENEVKSVAW-APSGNL-LATCSRDKSVWVWE 133
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 94/215 (43%), Gaps = 28/215 (13%)
Query: 413 IDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLC--PH 470
+ H V+DLA S + I+ DKT+++WD TG+ F GH + VYS+ P
Sbjct: 72 LTGHNHFVSDLALSQ--ENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPD 129
Query: 471 AKENIHFIFSISVDGKIKAWLYDSLG------ARVDYDAPGLGCTR---MAYSANGRRLF 521
++ I S + +IK W + LG A + + + C R + SAN + F
Sbjct: 130 NRQ----ILSAGAEREIKLW--NILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPF 183
Query: 522 SCGTSKEG-ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKI 580
+ + G + L WN + I+ T++ + N +S+ I G D + I
Sbjct: 184 APYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSI---SPNGKYIATGGKDKKLLI 239
Query: 581 WD-MNKVQLLTTIDAGGGLPE---NPRICFNKNGT 611
WD +N DAG + + NP++ + GT
Sbjct: 240 WDILNLTYPQREFDAGSTINQIAFNPKLQWVAVGT 274
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/53 (24%), Positives = 28/53 (52%)
Query: 841 DSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG 893
D T+ +++ R+ + GH V + FS ++S+G + +I +W++ G
Sbjct: 97 DKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILG 149
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 51/216 (23%), Positives = 84/216 (38%), Gaps = 50/216 (23%)
Query: 349 RNFKVW--DIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLY------- 399
RN VW D G+ S L +T D V V WS DGS L V +V +Y
Sbjct: 113 RNVYVWNADSGSVSALAET----DESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTK 168
Query: 400 ------------------------------AYHGGSDARQQL-EIDAHVGNVNDLAFSAP 428
+H A Q+ + H V LA+ +
Sbjct: 169 LRTMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSD 228
Query: 429 CKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL--CPHAKENIHFIFSISVDGK 486
Q++ + G+D +++WDA + ++ H A V ++ CP + N+ ++D +
Sbjct: 229 GLQLA--SGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPW-QSNLLATGGGTMDKQ 285
Query: 487 IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFS 522
I W + GARV+ G T + +S + + + S
Sbjct: 286 IHFW-NAATGARVNTVDAGSQVTSLIWSPHSKEIMS 320
Score = 36.6 bits (83), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 6/94 (6%)
Query: 799 GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNAR-SSEVISK 857
G++ +Y V + + T+ L++N H V++ G I ++ R ++ I
Sbjct: 156 GLVDIYDVESQTKLRTMAGHQARVGCLSWNRH---VLSSGSRSGAIHHHDVRIANHQIGT 212
Query: 858 LEGHSKRVTGLVF-SDALNILVSSGGDAQIFVWD 890
L+GHS V GL + SD L L S G D + +WD
Sbjct: 213 LQGHSSEVCGLAWRSDGLQ-LASGGNDNVVQIWD 245
Score = 31.2 bits (69), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 54/121 (44%), Gaps = 4/121 (3%)
Query: 773 TDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDN 832
T + Q V C + +++ S SG + + + I T+ S LA+ D
Sbjct: 171 TMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRS-DG 229
Query: 833 NVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGG---DAQIFVW 889
+A G +D+ + I++ARSS H+ V + + + L+++GG D QI W
Sbjct: 230 LQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFW 289
Query: 890 D 890
+
Sbjct: 290 N 290
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 76/185 (41%), Gaps = 20/185 (10%)
Query: 316 MDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSV 375
+ ++P + LL ++ LWD+N+ K +V D TA+V D
Sbjct: 187 LSWNPNLNGYLLSASDDHTICLWDINATPK----EHRVIDAKNI-FTGHTAVVED----- 236
Query: 376 NRVVWSP-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISV 434
V W SL G + ++ + ++ +DAH VN L+F+ P + +
Sbjct: 237 --VAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFN-PYSEFIL 293
Query: 435 ITCGDDKTIKVWDAVTGS-RTYSFEGHGAPVYSL--CPHAKENIHFIFSISVDGKIKAWL 491
T DKT+ +WD + +SFE H ++ + PH N + S D ++ W
Sbjct: 294 ATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH---NETILASSGTDRRLHVWD 350
Query: 492 YDSLG 496
+G
Sbjct: 351 LSKIG 355
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 808 TFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV-ISKLEGHSKRVT 866
T K T+ + L+FNP+ ++A G D T+ +++ R+ ++ + E H +
Sbjct: 266 TSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIF 325
Query: 867 GLVFS-DALNILVSSGGDAQIFVWDV 891
+ +S IL SSG D ++ VWD+
Sbjct: 326 QVQWSPHNETILASSGTDRRLHVWDL 351
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 38/189 (20%), Positives = 77/189 (40%), Gaps = 38/189 (20%)
Query: 434 VITCGDDKTIKVWDAVTGSRTYS-------FEGHGAPVYSLCPHAKENIHFIFSISVDGK 486
+++ DD TI +WD + + F GH A V + H F S++ D K
Sbjct: 197 LLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLF-GSVADDQK 255
Query: 487 IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRL-FSCGTSKEGESFLVEWNESEGAIKR 545
+ W D ++ +++ + +C + F++ + G+ +
Sbjct: 256 LMIW-----------DTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFIL----ATGSADK 300
Query: 546 TYQGLQLQHNSVSVVHFDTAKDQIL-------------AAGDDHVIKIWDMNKV-QLLTT 591
T L++ + + F++ KD+I ++G D + +WD++K+ + +T
Sbjct: 301 TVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQST 360
Query: 592 IDAGGGLPE 600
DA G PE
Sbjct: 361 EDAEDGPPE 369
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 76/185 (41%), Gaps = 20/185 (10%)
Query: 316 MDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSV 375
+ ++P + LL ++ LWD+N+ K +V D TA+V D
Sbjct: 189 LSWNPNLNGYLLSASDDHTICLWDINATPK----EHRVIDAKNI-FTGHTAVVED----- 238
Query: 376 NRVVWSP-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISV 434
V W SL G + ++ + ++ +DAH VN L+F+ P + +
Sbjct: 239 --VAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFN-PYSEFIL 295
Query: 435 ITCGDDKTIKVWDAVTGS-RTYSFEGHGAPVYSL--CPHAKENIHFIFSISVDGKIKAWL 491
T DKT+ +WD + +SFE H ++ + PH N + S D ++ W
Sbjct: 296 ATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH---NETILASSGTDRRLHVWD 352
Query: 492 YDSLG 496
+G
Sbjct: 353 LSKIG 357
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 808 TFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV-ISKLEGHSKRVT 866
T K T+ + L+FNP+ ++A G D T+ +++ R+ ++ + E H +
Sbjct: 268 TSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIF 327
Query: 867 GLVFS-DALNILVSSGGDAQIFVWDV 891
+ +S IL SSG D ++ VWD+
Sbjct: 328 QVQWSPHNETILASSGTDRRLHVWDL 353
Score = 30.4 bits (67), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 38/189 (20%), Positives = 77/189 (40%), Gaps = 38/189 (20%)
Query: 434 VITCGDDKTIKVWDAVTGSRTYS-------FEGHGAPVYSLCPHAKENIHFIFSISVDGK 486
+++ DD TI +WD + + F GH A V + H F S++ D K
Sbjct: 199 LLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLF-GSVADDQK 257
Query: 487 IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRL-FSCGTSKEGESFLVEWNESEGAIKR 545
+ W D ++ +++ + +C + F++ + G+ +
Sbjct: 258 LMIW-----------DTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFIL----ATGSADK 302
Query: 546 TYQGLQLQHNSVSVVHFDTAKDQIL-------------AAGDDHVIKIWDMNKV-QLLTT 591
T L++ + + F++ KD+I ++G D + +WD++K+ + +T
Sbjct: 303 TVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQST 362
Query: 592 IDAGGGLPE 600
DA G PE
Sbjct: 363 EDAEDGPPE 371
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 73/175 (41%), Gaps = 20/175 (11%)
Query: 326 LLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DG 384
LL ++ LWD+N+G K K+ D A +A+V D V W
Sbjct: 195 LLSASDDHTVCLWDINAGPK----EGKIVDAKAI-FTGHSAVVED-------VAWHLLHE 242
Query: 385 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIK 444
SL G + ++ + ++ +DAH VN L+F+ P + + T DKT+
Sbjct: 243 SLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFN-PYSEFILATGSADKTVA 301
Query: 445 VWDAVTGS-RTYSFEGHGAPVYSL--CPHAKENIHFIFSISVDGKIKAWLYDSLG 496
+WD + ++FE H ++ + PH N + S D ++ W +G
Sbjct: 302 LWDLRNLKLKLHTFESHKDEIFQVHWSPH---NETILASSGTDRRLNVWDLSKIG 353
Score = 38.1 bits (87), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 825 LAFNPHDNNVIAIGMDDSTILIYNARSSEV-ISKLEGHSKRVTGLVFS-DALNILVSSGG 882
L+FNP+ ++A G D T+ +++ R+ ++ + E H + + +S IL SSG
Sbjct: 281 LSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGT 340
Query: 883 DAQIFVWDV 891
D ++ VWD+
Sbjct: 341 DRRLNVWDL 349
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 75/181 (41%), Gaps = 22/181 (12%)
Query: 434 VITCGDDKTIKVWDAVTGSRTYS-------FEGHGAPVYSLCPHAKENIHFIFSISVDGK 486
+++ DD T+ +WD G + F GH A V + H F S++ D K
Sbjct: 195 LLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLF-GSVADDQK 253
Query: 487 IKAWLYDSLGAR-----VDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 541
+ W S VD + C ++++ + + G++ + + W+
Sbjct: 254 LMIWDTRSNTTSKPSHLVDAHTAEVNC--LSFNPYSEFILATGSADKTVAL---WDLRN- 307
Query: 542 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMNKV-QLLTTIDAGGGLP 599
+K + + + VH+ + ILA+ G D + +WD++K+ + + DA G P
Sbjct: 308 -LKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPP 366
Query: 600 E 600
E
Sbjct: 367 E 367
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 46/92 (50%), Gaps = 12/92 (13%)
Query: 830 HDNNVIAIGMDDSTILIYNARSSE----VISKLEGHSKRVTGLVFSDAL-NILVSSGGDA 884
H+N +IA +D+ ++ +Y+ + +++ HS V + F+ N+L S G +
Sbjct: 77 HNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNG 136
Query: 885 QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSET 916
+IF+WD++ + ++P L P ++
Sbjct: 137 EIFIWDMN-------KCTESPSNYTPLTPGQS 161
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 53/239 (22%), Positives = 98/239 (41%), Gaps = 49/239 (20%)
Query: 310 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVR 369
SSS ++ F+ Q +L G N G+ +WD+N C+
Sbjct: 113 SSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNK----------------CTESPSNYTPL 156
Query: 370 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPC 429
PG S++ V ++ +A+++ + ++A G S+ ++ A V L++++P
Sbjct: 157 TPGQSMSSV-----DEVISLAWNQSLAHVFASAGSSNFASIWDLKAK-KEVIHLSYTSPN 210
Query: 430 ----KQISVIT--------------CGDDKTIKVWD---AVTGSRTYSFEGHGAPVYSL- 467
+Q+SV+ +D +I +WD A T +T + +GH + SL
Sbjct: 211 SGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLN-QGHQKGILSLD 269
Query: 468 -CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT 525
C H E H + S D + W +S + A G C + ++ LF+C +
Sbjct: 270 WC-HQDE--HLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACAS 325
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 537 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH-VIKIWDMNK 585
NE+ AI + +SV V F+ +D +LA+G ++ I IWDMNK
Sbjct: 97 NEANNAINSMAR-FSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNK 145
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 73/175 (41%), Gaps = 20/175 (11%)
Query: 326 LLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DG 384
LL ++ LWD+N+G K K+ D A +A+V D V W
Sbjct: 195 LLSASDDHTVCLWDINAGPK----EGKIVDAKAI-FTGHSAVVED-------VAWHLLHE 242
Query: 385 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIK 444
SL G + ++ + ++ +DAH VN L+F+ P + + T DKT+
Sbjct: 243 SLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFN-PYSEFILATGSADKTVA 301
Query: 445 VWDAVTGS-RTYSFEGHGAPVYSL--CPHAKENIHFIFSISVDGKIKAWLYDSLG 496
+WD + ++FE H ++ + PH N + S D ++ W +G
Sbjct: 302 LWDLRNLKLKLHTFESHKDEIFQVHWSPH---NETILASSGTDRRLNVWDLSKIG 353
Score = 38.1 bits (87), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 825 LAFNPHDNNVIAIGMDDSTILIYNARSSEV-ISKLEGHSKRVTGLVFS-DALNILVSSGG 882
L+FNP+ ++A G D T+ +++ R+ ++ + E H + + +S IL SSG
Sbjct: 281 LSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGT 340
Query: 883 DAQIFVWDV 891
D ++ VWD+
Sbjct: 341 DRRLNVWDL 349
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 75/181 (41%), Gaps = 22/181 (12%)
Query: 434 VITCGDDKTIKVWDAVTGSRTYS-------FEGHGAPVYSLCPHAKENIHFIFSISVDGK 486
+++ DD T+ +WD G + F GH A V + H F S++ D K
Sbjct: 195 LLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLF-GSVADDQK 253
Query: 487 IKAWLYDSLGAR-----VDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 541
+ W S VD + C ++++ + + G++ + + W+
Sbjct: 254 LXIWDTRSNTTSKPSHLVDAHTAEVNC--LSFNPYSEFILATGSADKTVAL---WDLRN- 307
Query: 542 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMNKV-QLLTTIDAGGGLP 599
+K + + + VH+ + ILA+ G D + +WD++K+ + + DA G P
Sbjct: 308 -LKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPP 366
Query: 600 E 600
E
Sbjct: 367 E 367
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 65/144 (45%), Gaps = 9/144 (6%)
Query: 456 SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRM---A 512
+ +GHG V LC ++ I S S DGK+ W DS ++ A + CT + A
Sbjct: 59 TLKGHGNKV--LCMDWCKDKRRIVSSSQDGKVIVW--DSFTTNKEH-AVTMPCTWVMACA 113
Query: 513 YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA 572
Y+ +G + G + + + ++++E + + + + N +S F + QIL A
Sbjct: 114 YAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKK-KSVAMHTNYLSACSFTNSDMQILTA 172
Query: 573 GDDHVIKIWDMNKVQLLTTIDAGG 596
D +WD+ QLL + G
Sbjct: 173 SGDGTCALWDVESGQLLQSFHGHG 196
Score = 34.3 bits (77), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 2/84 (2%)
Query: 407 ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYS 466
A ++ + H ++ +F+ QI +T D T +WD +G SF GHGA V
Sbjct: 144 AAKKKSVAMHTNYLSACSFTNSDMQI--LTASGDGTCALWDVESGQLLQSFHGHGADVLC 201
Query: 467 LCPHAKENIHFIFSISVDGKIKAW 490
L E + S D K W
Sbjct: 202 LDLAPSETGNTFVSGGCDKKAMVW 225
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 60/177 (33%), Gaps = 48/177 (27%)
Query: 326 LLVGTNVGDTGLWDVNSGQKL-----------------------FI-----RNFKVWDI- 356
+L + G LWDV SGQ L F+ + VWD+
Sbjct: 169 ILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMR 228
Query: 357 -GACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDA 415
G C F+T VN V + P G +LY D R E+
Sbjct: 229 SGQCVQAFET-----HESDVNSVRYYPSGDAFASGSDDATCRLY------DLRADREVAI 277
Query: 416 HVGNVNDLAFSAPCKQISV-----ITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL 467
+ + + F A S+ +D TI VWD + GSR GH V +L
Sbjct: 278 Y--SKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTL 332
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 808 TFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV-ISKLEGHSKRVT 866
T K T+ + L+FNP+ ++A G D T+ +++ R+ ++ + E H +
Sbjct: 270 TSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIF 329
Query: 867 GLVFS-DALNILVSSGGDAQIFVWDV 891
+ +S IL SSG D ++ VWD+
Sbjct: 330 QVQWSPHNETILASSGTDRRLHVWDL 355
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 76/185 (41%), Gaps = 20/185 (10%)
Query: 316 MDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSV 375
+ ++P + LL ++ LWD+N+ K +V D TA+V D
Sbjct: 191 LSWNPNLNGYLLSASDDHTICLWDINATPK----EHRVIDAKNI-FTGHTAVVED----- 240
Query: 376 NRVVWSP-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISV 434
V W SL G + ++ + ++ +DAH VN L+F+ P + +
Sbjct: 241 --VAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFN-PYSEFIL 297
Query: 435 ITCGDDKTIKVWDAVTGS-RTYSFEGHGAPVYSL--CPHAKENIHFIFSISVDGKIKAWL 491
T DKT+ +WD + +SFE H ++ + PH N + S D ++ W
Sbjct: 298 ATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH---NETILASSGTDRRLHVWD 354
Query: 492 YDSLG 496
+G
Sbjct: 355 LSKIG 359
Score = 29.6 bits (65), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 38/189 (20%), Positives = 77/189 (40%), Gaps = 38/189 (20%)
Query: 434 VITCGDDKTIKVWDAVTGSRTYS-------FEGHGAPVYSLCPHAKENIHFIFSISVDGK 486
+++ DD TI +WD + + F GH A V + H F S++ D K
Sbjct: 201 LLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLF-GSVADDQK 259
Query: 487 IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRL-FSCGTSKEGESFLVEWNESEGAIKR 545
+ W D ++ +++ + +C + F++ + G+ +
Sbjct: 260 LMIW-----------DTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFIL----ATGSADK 304
Query: 546 TYQGLQLQHNSVSVVHFDTAKDQIL-------------AAGDDHVIKIWDMNKV-QLLTT 591
T L++ + + F++ KD+I ++G D + +WD++K+ + +T
Sbjct: 305 TVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQST 364
Query: 592 IDAGGGLPE 600
DA G PE
Sbjct: 365 EDAEDGPPE 373
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 54/115 (46%), Gaps = 5/115 (4%)
Query: 781 VPCFALS--KNDAYLFSASGGVISLYIVMTFKTILTIMPPSP--TATSLAFNPHDNNVIA 836
V C A S K+ +L + I L+ K I +P TSLA++P + V
Sbjct: 172 VTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFV 231
Query: 837 IGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFS-DALNILVSSGGDAQIFVWD 890
G ++ T+ + + +S+ + HS+ VTGLVFS ++ L S D + V D
Sbjct: 232 FGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLD 286
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 48/101 (47%), Gaps = 4/101 (3%)
Query: 788 KNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIY 847
+++ ++F G +SL + +L+ S T L F+PH +A +D ++ +
Sbjct: 226 QSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVL 285
Query: 848 NARSSEVISKLEGHSKRVTGLVFSDALN--ILVSSGGDAQI 886
++ SE+ + + H V +S LN +L + G D Q+
Sbjct: 286 DSSLSELF-RSQAHRDFVRDATWS-PLNHSLLTTVGWDHQV 324
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 50/115 (43%), Gaps = 7/115 (6%)
Query: 385 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIK 444
SL G + ++ + ++ +DAH VN L+F+ P + + T DKT+
Sbjct: 241 SLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFN-PYSEFILATGSADKTVA 299
Query: 445 VWDAVTGS-RTYSFEGHGAPVYSL--CPHAKENIHFIFSISVDGKIKAWLYDSLG 496
+WD + +SFE H ++ + PH N + S D ++ W +G
Sbjct: 300 LWDLRNLKLKLHSFESHKDEIFQVQWSPH---NETILASSGTDRRLNVWDLSKIG 351
Score = 38.5 bits (88), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 825 LAFNPHDNNVIAIGMDDSTILIYNARSSEV-ISKLEGHSKRVTGLVFS-DALNILVSSGG 882
L+FNP+ ++A G D T+ +++ R+ ++ + E H + + +S IL SSG
Sbjct: 279 LSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGT 338
Query: 883 DAQIFVWDV 891
D ++ VWD+
Sbjct: 339 DRRLNVWDL 347
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 38.9 bits (89), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 45/96 (46%), Gaps = 8/96 (8%)
Query: 804 YIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS-------EVIS 856
Y T +L S+A+ PH +++A G DST+ I+ S ++++
Sbjct: 43 YDDFTLIDVLDETAHKKAIRSVAWRPH-TSLLAAGSFDSTVSIWAKEESADRTFEMDLLA 101
Query: 857 KLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVD 892
+EGH V G+ +S+ L + D +++W+ D
Sbjct: 102 IIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETD 137
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 51/125 (40%), Gaps = 12/125 (9%)
Query: 374 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLE----IDAHVGNVNDLAFSAPC 429
++ V W P SLL V ++A +D +++ I+ H V +A+S
Sbjct: 60 AIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDG 119
Query: 430 KQISVITCGDDKTIKVWDAVTGSRTYS----FEGHGAPVYSLCPHAKENIHFIFSISVDG 485
++ TC DK++ +W+ Y + H V + H E + + S S D
Sbjct: 120 YYLA--TCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEAL--LASSSYDD 175
Query: 486 KIKAW 490
++ W
Sbjct: 176 TVRIW 180
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 38.9 bits (89), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 81/193 (41%), Gaps = 20/193 (10%)
Query: 412 EIDAHVGNVNDLAF-SAPCKQISVITCGDDKTIKVW----DAVTGSRTYSF-----EGHG 461
++ H G V LA P V++ DKT+ W D + +Y EGH
Sbjct: 8 QLTGHRGWVTSLACPQTPETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHS 67
Query: 462 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLF 521
A V + N +F S S D ++ W + + + +A+S + R++
Sbjct: 68 AFVSDVA--LSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIV 125
Query: 522 SCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQ--ILAAGDDHVIK 579
S G ++ L WN + +G + VS V F + D I++ G D+++K
Sbjct: 126 SGGR----DNALRVWNVKGECMHTLSRGAHT--DWVSCVRFSPSLDAPVIVSGGWDNLVK 179
Query: 580 IWDMNKVQLLTTI 592
+WD+ +L+T +
Sbjct: 180 VWDLATGRLVTDL 192
Score = 34.3 bits (77), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 29/53 (54%)
Query: 841 DSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG 893
D ++ ++N ++ + K GH+K V + FS +VS G D + VW+V G
Sbjct: 88 DHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKG 140
Score = 33.9 bits (76), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 43/209 (20%), Positives = 85/209 (40%), Gaps = 8/209 (3%)
Query: 378 VVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITC 437
V +SPD + + ++++ G + L AH V+ + FS +++
Sbjct: 115 VAFSPDNRQIVSGGRDNALRVWNVKG--ECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSG 172
Query: 438 GDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA 497
G D +KVWD TG +GH V S+ + S DG + W + G
Sbjct: 173 GWDNLVKVWDLATGRLVTDLKGHTNYVTSVT--VSPDGSLCASSDKDGVARLWDL-TKGE 229
Query: 498 RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG-ESFLVEWNESEGAIKRTYQGLQLQHNS 556
+ A G ++ +S N R + C +++G F +E + + +QG +
Sbjct: 230 ALSEMAAGAPINQICFSPN--RYWMCAATEKGIRIFDLENKDIIVELAPEHQGSKKIVPE 287
Query: 557 VSVVHFDTAKDQILAAGDDHVIKIWDMNK 585
+ + + + D+VI++W +++
Sbjct: 288 CVSIAWSADGSTLYSGYTDNVIRVWGVSE 316
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 823 TSLAFNPH-DNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSG 881
+ + F+P D VI G D+ + +++ + +++ L+GH+ VT + S ++ SS
Sbjct: 156 SCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSD 215
Query: 882 GDAQIFVWDV 891
D +WD+
Sbjct: 216 KDGVARLWDL 225
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 56/250 (22%), Positives = 90/250 (36%), Gaps = 66/250 (26%)
Query: 440 DKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV 499
DKT+++WD TG F GH + V S+ K ++ I S S D IK W
Sbjct: 86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM--IISGSRDKTIKVW--------- 134
Query: 500 DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHN---- 555
IK L HN
Sbjct: 135 ------------------------------------------TIKGQCLATLLGHNDWVS 152
Query: 556 SVSVVHFDTAKDQ---ILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTL 612
V VV + A D I++AG+D ++K W++N+ Q+ D G + + +GTL
Sbjct: 153 QVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI--EADFIGHNSNINTLTASPDGTL 210
Query: 613 LAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPK- 671
+A + I + ++ D + L+ +P A A G + DP+
Sbjct: 211 IASAGKDGEIMLWNLAAKKAMYTLSA-QDEVFSLAFSPNRYWLAAATATGIKVFSLDPQY 269
Query: 672 --EDVKPEIS 679
+D++PE +
Sbjct: 270 LVDDLRPEFA 279
Score = 33.5 bits (75), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 55/126 (43%), Gaps = 10/126 (7%)
Query: 417 VGNVNDLAFSAPCKQISVITCGD-DKTIKVWDAVTGSRTYSFEGHGAPV--YSLCPHAKE 473
VG+ +D+ K+ S+I G DKTIKVW + G + GH V + P+ K
Sbjct: 104 VGHKSDVMSVDIDKKASMIISGSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKA 162
Query: 474 NIHFIFSISV--DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGES 531
+ + IS D +KAW + D+ + S +G + S G K+GE
Sbjct: 163 DDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAG--KDGEI 220
Query: 532 FLVEWN 537
L WN
Sbjct: 221 ML--WN 224
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 56/250 (22%), Positives = 90/250 (36%), Gaps = 66/250 (26%)
Query: 440 DKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV 499
DKT+++WD TG F GH + V S+ K ++ I S S D IK W
Sbjct: 80 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM--IISGSRDKTIKVW--------- 128
Query: 500 DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHN---- 555
IK L HN
Sbjct: 129 ------------------------------------------TIKGQCLATLLGHNDWVS 146
Query: 556 SVSVVHFDTAKDQ---ILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTL 612
V VV + A D I++AG+D ++K W++N+ Q+ D G + + +GTL
Sbjct: 147 QVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI--EADFIGHNSNINTLTASPDGTL 204
Query: 613 LAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPK- 671
+A + I + ++ D + L+ +P A A G + DP+
Sbjct: 205 IASAGKDGEIMLWNLAAKKAMYTLSA-QDEVFSLAFSPNRYWLAAATATGIKVFSLDPQY 263
Query: 672 --EDVKPEIS 679
+D++PE +
Sbjct: 264 LVDDLRPEFA 273
Score = 33.5 bits (75), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 55/126 (43%), Gaps = 10/126 (7%)
Query: 417 VGNVNDLAFSAPCKQISVITCGD-DKTIKVWDAVTGSRTYSFEGHGAPV--YSLCPHAKE 473
VG+ +D+ K+ S+I G DKTIKVW + G + GH V + P+ K
Sbjct: 98 VGHKSDVMSVDIDKKASMIISGSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKA 156
Query: 474 NIHFIFSISV--DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGES 531
+ + IS D +KAW + D+ + S +G + S G K+GE
Sbjct: 157 DDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAG--KDGEI 214
Query: 532 FLVEWN 537
L WN
Sbjct: 215 ML--WN 218
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 56/250 (22%), Positives = 90/250 (36%), Gaps = 66/250 (26%)
Query: 440 DKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV 499
DKT+++WD TG F GH + V S+ K ++ I S S D IK W
Sbjct: 86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM--IISGSRDKTIKVW--------- 134
Query: 500 DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHN---- 555
IK L HN
Sbjct: 135 ------------------------------------------TIKGQCLATLLGHNDWVS 152
Query: 556 SVSVVHFDTAKDQ---ILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTL 612
V VV + A D I++AG+D ++K W++N+ Q+ D G + + +GTL
Sbjct: 153 QVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI--EADFIGHNSNINTLTASPDGTL 210
Query: 613 LAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPK- 671
+A + I + ++ D + L+ +P A A G + DP+
Sbjct: 211 IASAGKDGEIMLWNLAAKKAMYTLSA-QDEVFSLAFSPNRYWLAAATATGIKVFSLDPQY 269
Query: 672 --EDVKPEIS 679
+D++PE +
Sbjct: 270 LVDDLRPEFA 279
Score = 33.5 bits (75), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 55/126 (43%), Gaps = 10/126 (7%)
Query: 417 VGNVNDLAFSAPCKQISVITCGD-DKTIKVWDAVTGSRTYSFEGHGAPV--YSLCPHAKE 473
VG+ +D+ K+ S+I G DKTIKVW + G + GH V + P+ K
Sbjct: 104 VGHKSDVMSVDIDKKASMIISGSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKA 162
Query: 474 NIHFIFSISV--DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGES 531
+ + IS D +KAW + D+ + S +G + S G K+GE
Sbjct: 163 DDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAG--KDGEI 220
Query: 532 FLVEWN 537
L WN
Sbjct: 221 ML--WN 224
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 38.5 bits (88), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 56/250 (22%), Positives = 90/250 (36%), Gaps = 66/250 (26%)
Query: 440 DKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV 499
DKT+++WD TG F GH + V S+ K ++ I S S D IK W
Sbjct: 86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM--IISGSRDKTIKVW--------- 134
Query: 500 DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHN---- 555
IK L HN
Sbjct: 135 ------------------------------------------TIKGQCLATLLGHNDWVS 152
Query: 556 SVSVVHFDTAKDQ---ILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTL 612
V VV + A D I++AG+D ++K W++N+ Q+ D G + + +GTL
Sbjct: 153 QVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI--EADFIGHNSNINTLTASPDGTL 210
Query: 613 LAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPK- 671
+A + I + ++ D + L+ +P A A G + DP+
Sbjct: 211 IASAGKDGEIMLWNLAAKKAMYTLSA-QDEVFSLAFSPNRYWLAAATATGIKVFSLDPQY 269
Query: 672 --EDVKPEIS 679
+D++PE +
Sbjct: 270 LVDDLRPEFA 279
Score = 33.5 bits (75), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 55/126 (43%), Gaps = 10/126 (7%)
Query: 417 VGNVNDLAFSAPCKQISVITCGD-DKTIKVWDAVTGSRTYSFEGHGAPV--YSLCPHAKE 473
VG+ +D+ K+ S+I G DKTIKVW + G + GH V + P+ K
Sbjct: 104 VGHKSDVMSVDIDKKASMIISGSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKA 162
Query: 474 NIHFIFSISV--DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGES 531
+ + IS D +KAW + D+ + S +G + S G K+GE
Sbjct: 163 DDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAG--KDGEI 220
Query: 532 FLVEWN 537
L WN
Sbjct: 221 ML--WN 224
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 38.5 bits (88), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 56/250 (22%), Positives = 90/250 (36%), Gaps = 66/250 (26%)
Query: 440 DKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV 499
DKT+++WD TG F GH + V S+ K ++ I S S D IK W
Sbjct: 86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM--IISGSRDKTIKVW--------- 134
Query: 500 DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHN---- 555
IK L HN
Sbjct: 135 ------------------------------------------TIKGQCLATLLGHNDWVS 152
Query: 556 SVSVVHFDTAKDQ---ILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTL 612
V VV + A D I++AG+D ++K W++N+ Q+ D G + + +GTL
Sbjct: 153 QVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI--EADFIGHNSNINTLTASPDGTL 210
Query: 613 LAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPK- 671
+A + I + ++ D + L+ +P A A G + DP+
Sbjct: 211 IASAGKDGEIMLWNLAAKKAMYTLSA-QDEVFSLAFSPNRYWLAAATATGIKVFSLDPQY 269
Query: 672 --EDVKPEIS 679
+D++PE +
Sbjct: 270 LVDDLRPEFA 279
Score = 33.5 bits (75), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 54/226 (23%), Positives = 91/226 (40%), Gaps = 21/226 (9%)
Query: 417 VGNVNDLAFSAPCKQISVITCGD-DKTIKVWDAVTGSRTYSFEGHGAPV--YSLCPHAKE 473
VG+ +D+ K+ S+I G DKTIKVW + G + GH V + P+ K
Sbjct: 104 VGHKSDVMSVDIDKKASMIISGSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKA 162
Query: 474 NIHFIFSISV--DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGES 531
+ + IS D +KAW + D+ + S +G + S G K+GE
Sbjct: 163 DDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAG--KDGEI 220
Query: 532 FLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 591
L WN A K+ L Q S+ + LAA IK++ ++ L+
Sbjct: 221 ML--WNL---AAKKAMYTLSAQDEVFSLAF--SPNRYWLAAATATGIKVFSLDPQYLVDD 273
Query: 592 ID------AGGGLPENPRICFNKNGTLLAVIANENRIKILETPESN 631
+ + P + ++ +G L +N I++ + +N
Sbjct: 274 LRPEFAGYSAAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTAN 319
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 38.5 bits (88), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 49/104 (47%), Gaps = 6/104 (5%)
Query: 789 NDAYLFSASGG-VISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIY 847
+D Y+ SASG I ++ T + + T+ L + + ++ G D+TI ++
Sbjct: 265 DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR---DRLVVSGSSDNTIRLW 321
Query: 848 NARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDV 891
+ + LEGH + V + F + +VS D +I VWD+
Sbjct: 322 DIECGACLRVLEGHEELVRCIRFDNKR--IVSGAYDGKIKVWDL 363
Score = 38.5 bits (88), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 831 DNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 890
D+ I D TI ++N + E + L GH + + L + D L +VS D I +WD
Sbjct: 265 DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRL--VVSGSSDNTIRLWD 322
Query: 891 VD 892
++
Sbjct: 323 IE 324
Score = 37.7 bits (86), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 39/86 (45%), Gaps = 8/86 (9%)
Query: 434 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 493
V++ D TI++WD G+ EGH V + K I S + DGKIK W
Sbjct: 309 VVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKR----IVSGAYDGKIKVW--- 361
Query: 494 SLGARVDYDAP-GLGCTRMAYSANGR 518
L A +D AP G C R +GR
Sbjct: 362 DLVAALDPRAPAGTLCLRTLVEHSGR 387
Score = 37.0 bits (84), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Query: 815 IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDAL 874
I S T+ + +D+ I G+ D+TI I++ + E L GH+ V L + +
Sbjct: 126 IHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDE-- 183
Query: 875 NILVSSGGDAQIFVWDVD 892
++++ D+ + VWDV+
Sbjct: 184 RVIITGSSDSTVRVWDVN 201
Score = 33.9 bits (76), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 47/230 (20%), Positives = 84/230 (36%), Gaps = 52/230 (22%)
Query: 413 IDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAK 472
+ H G+V L + + +IT D T++VWD TG + H V H +
Sbjct: 169 LTGHTGSVLCLQYD----ERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVL----HLR 220
Query: 473 ENIHFIFSISVDGKIKAWLYDS----------LGAR-----VDYDAPGLGCTRMAYSANG 517
N + + S D I W S +G R VD+D +
Sbjct: 221 FNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYI----------- 269
Query: 518 RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDH 576
S G+ + WN S RT G ++ + + +D+++ +G D+
Sbjct: 270 -------VSASGDRTIKVWNTSTCEFVRTLNG---HKRGIACLQY---RDRLVVSGSSDN 316
Query: 577 VIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILE 626
I++WD+ L ++ L C + + A + +IK+ +
Sbjct: 317 TIRLWDIECGACLRVLEGHEELVR----CIRFDNKRIVSGAYDGKIKVWD 362
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 38.1 bits (87), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 99/244 (40%), Gaps = 37/244 (15%)
Query: 375 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDAR----QQLEIDAHVGNVNDLAFSAPCK 430
V+ V ++PDGSL + LY G+ L+ AH G+V L +S
Sbjct: 193 VHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGT 252
Query: 431 QISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENI----HFIFSISVDGK 486
+I+ + DKTIK+W+ T + PV + + I + SIS +G
Sbjct: 253 KIA--SASADKTIKIWNVATLKVEKTI-----PVGTRIEDQQLGIIWTKQALVSISANGF 305
Query: 487 IKAWLYDSLGA--RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 544
I ++ LG+ +V Y T ++ SA+G+ LFS + E + W+ S G
Sbjct: 306 IN-FVNPELGSIDQVRY-GHNKAITALSSSADGKTLFSA----DAEGHINSWDISTGISN 359
Query: 545 RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRI 604
R + + ++ + + D + DDH L + AGG ++ +
Sbjct: 360 RVFP--DVHATMITGIKTTSKGDLFTVSWDDH------------LKVVPAGGSGVDSSKA 405
Query: 605 CFNK 608
NK
Sbjct: 406 VANK 409
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 824 SLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGD 883
S+ F P I G DD+T+ I+ + S H+K V + ++ ++ S+GGD
Sbjct: 152 SVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGD 211
Query: 884 AQIFVWD-VDG 893
I +++ VDG
Sbjct: 212 GTIVLYNGVDG 222
Score = 30.0 bits (66), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 8/75 (10%)
Query: 824 SLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE-------GHSKRVTGLVFSDALNI 876
S+ +NP D ++ A D TI++YN E HS V GL +S
Sbjct: 195 SVRYNP-DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTK 253
Query: 877 LVSSGGDAQIFVWDV 891
+ S+ D I +W+V
Sbjct: 254 IASASADKTIKIWNV 268
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 38.1 bits (87), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%)
Query: 831 DNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 890
D + DD TI I++ ++ ++ LEGH V+ VF L I++S D + +W+
Sbjct: 197 DKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Score = 37.0 bits (84), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 434 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAW 490
+IT DD TIK+WD T S + EGH + V H + I S S DG +K W
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHP--TLPIIISGSEDGTLKIW 255
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 68/164 (41%), Gaps = 10/164 (6%)
Query: 434 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 493
+I DD I+V++ TG + FE H + S+ H + ++ S S D +K W ++
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTK--PYVLSGSDDLTVKLWNWE 127
Query: 494 SLGA-RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL 552
+ A ++ +A++ F+ G + + W S G +
Sbjct: 128 NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL---DRTVKVW--SLGQSTPNFTLTTG 182
Query: 553 QHNSVSVVHFDTAKDQ--ILAAGDDHVIKIWDMNKVQLLTTIDA 594
Q V+ V + D+ ++ A DD IKIWD + T++
Sbjct: 183 QERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEG 226
Score = 30.8 bits (68), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 46/102 (45%), Gaps = 5/102 (4%)
Query: 349 RNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDAR 408
R KVW +G + F ++ GV+ PD + A ++++ Y S
Sbjct: 163 RTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVA 222
Query: 409 QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 450
++ H+ NV+ F P I +I+ +D T+K+W++ T
Sbjct: 223 T---LEGHMSNVSFAVFH-PTLPI-IISGSEDGTLKIWNSST 259
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 38.1 bits (87), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%)
Query: 831 DNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 890
D + DD TI I++ ++ ++ LEGH V+ VF L I++S D + +W+
Sbjct: 197 DKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Score = 37.0 bits (84), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 434 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAW 490
+IT DD TIK+WD T S + EGH + V H + I S S DG +K W
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHP--TLPIIISGSEDGTLKIW 255
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 68/164 (41%), Gaps = 10/164 (6%)
Query: 434 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 493
+I DD I+V++ TG + FE H + S+ H + ++ S S D +K W ++
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTK--PYVLSGSDDLTVKLWNWE 127
Query: 494 SLGA-RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL 552
+ A ++ +A++ F+ G + + W S G +
Sbjct: 128 NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL---DRTVKVW--SLGQSTPNFTLTTG 182
Query: 553 QHNSVSVVHFDTAKDQ--ILAAGDDHVIKIWDMNKVQLLTTIDA 594
Q V+ V + D+ ++ A DD IKIWD + T++
Sbjct: 183 QERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEG 226
Score = 30.8 bits (68), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 46/102 (45%), Gaps = 5/102 (4%)
Query: 349 RNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDAR 408
R KVW +G + F ++ GV+ PD + A ++++ Y S
Sbjct: 163 RTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVA 222
Query: 409 QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 450
++ H+ NV+ F P I +I+ +D T+K+W++ T
Sbjct: 223 T---LEGHMSNVSFAVFH-PTLPI-IISGSEDGTLKIWNSST 259
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 38.1 bits (87), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 69/170 (40%), Gaps = 23/170 (13%)
Query: 415 AHVGNVNDLAFSAPCKQISVITCGD-DKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKE 473
H GNV L+F Q V+ G DKT KVW GS Y+ + H A V+ +
Sbjct: 102 GHQGNVCSLSF-----QDGVVISGSWDKTAKVWKE--GSLVYNLQAHNASVWDAKVVSFS 154
Query: 474 NIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL--GCTRMAYSANGRRLFSCGTSKEGES 531
F+ + S D IK W D +V G+ R + SC S +G
Sbjct: 155 ENKFL-TASADKTIKLWQND----KVIKTFSGIHNDVVRHLAVVDDGHFISC--SNDGLI 207
Query: 532 FLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIW 581
LV+ G + RTY+G H S I++ G+D ++IW
Sbjct: 208 KLVD--XHTGDVLRTYEG----HESFVYCIKLLPNGDIVSCGEDRTVRIW 251
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 37.7 bits (86), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 434 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAW 490
+IT DD TIK+WD T S + EGH + V H + I S S DG +K W
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHP--TLPIIISGSEDGTLKIW 255
Score = 37.0 bits (84), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 29/51 (56%)
Query: 840 DDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 890
DD TI I++ ++ ++ LEGH V+ VF L I++S D + +W+
Sbjct: 206 DDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Score = 31.2 bits (69), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 68/164 (41%), Gaps = 10/164 (6%)
Query: 434 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 493
+I DD I+V++ TG + FE H + S+ H + ++ S S D +K W ++
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTK--PYVLSGSDDLTVKLWNWE 127
Query: 494 SLGA-RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL 552
+ A ++ +A++ F+ G + + W S G +
Sbjct: 128 NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL---DRTVKVW--SLGQSTPNFTLTTG 182
Query: 553 QHNSVSVVHFDTAKDQ--ILAAGDDHVIKIWDMNKVQLLTTIDA 594
Q V+ V + D+ ++ A DD IKIWD + T++
Sbjct: 183 QERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEG 226
Score = 30.4 bits (67), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 46/102 (45%), Gaps = 5/102 (4%)
Query: 349 RNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDAR 408
R KVW +G + F ++ GV+ PD + A ++++ Y S
Sbjct: 163 RTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVA 222
Query: 409 QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 450
++ H+ NV+ F P I +I+ +D T+K+W++ T
Sbjct: 223 T---LEGHMSNVSFAVFH-PTLPI-IISGSEDGTLKIWNSST 259
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 37.0 bits (84), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 434 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAW 490
+IT DD TIK+WD T S + EGH + V H + I S S DG +K W
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHP--TLPIIISGSEDGTLKIW 255
Score = 37.0 bits (84), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 29/51 (56%)
Query: 840 DDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 890
DD TI I++ ++ ++ LEGH V+ VF L I++S D + +W+
Sbjct: 206 DDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Score = 31.2 bits (69), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 68/164 (41%), Gaps = 10/164 (6%)
Query: 434 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 493
+I DD I+V++ TG + FE H + S+ H + ++ S S D +K W ++
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTK--PYVLSGSDDLTVKLWNWE 127
Query: 494 SLGA-RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL 552
+ A ++ +A++ F+ G + + W S G +
Sbjct: 128 NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL---DRTVKVW--SLGQSTPNFTLTTG 182
Query: 553 QHNSVSVVHFDTAKDQ--ILAAGDDHVIKIWDMNKVQLLTTIDA 594
Q V+ V + D+ ++ A DD IKIWD + T++
Sbjct: 183 QERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEG 226
Score = 30.0 bits (66), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 46/102 (45%), Gaps = 5/102 (4%)
Query: 349 RNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDAR 408
R KVW +G + F ++ GV+ PD + A ++++ Y S
Sbjct: 163 RTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVA 222
Query: 409 QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 450
++ H+ NV+ F P I +I+ +D T+K+W++ T
Sbjct: 223 T---LEGHMSNVSFAVFH-PTLPI-IISGSEDGTLKIWNSST 259
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 36.6 bits (83), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 22/48 (45%)
Query: 842 STILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVW 889
STI +Y S E I+ L+GH K V VF L S D I W
Sbjct: 314 STIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAW 361
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 74/178 (41%), Gaps = 20/178 (11%)
Query: 304 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLF 363
+T+ SP+S +H L+ VGT L D+ SG I +I A S
Sbjct: 142 ETVYSHHMSPVS-----TKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSP 196
Query: 364 KTALVRDPGVSVNRV-VWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVND 422
+ + + +RV +W + S ++ L ++G + AH G VN
Sbjct: 197 RYDYILATASADSRVKLWDVRRA------SGCLITLDQHNGKKSQAVESANTAHNGKVNG 250
Query: 423 LAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFS 480
L F++ + ++T G D +++W++ G T G +C ++K+ + F S
Sbjct: 251 LCFTS--DGLHLLTVGTDNRMRLWNSSNGENTLVNYG------KVCNNSKKGLKFTVS 300
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 48/112 (42%), Gaps = 16/112 (14%)
Query: 550 LQLQHNSVSVVHFDTAKDQILA-AGDDHVIKIWDMNKVQ-LLTTIDAGGG---------- 597
LQ + V + D ILA A D +K+WD+ + L T+D G
Sbjct: 182 LQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESAN 241
Query: 598 LPENPRI---CFNKNGTLLAVIANENRIKILETPES-NSVDAAGVLSDNLRK 645
N ++ CF +G L + +NR+++ + N++ G + +N +K
Sbjct: 242 TAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKK 293
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 5/113 (4%)
Query: 779 EAVPCFALSKNDAYL-FSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAI 837
E + A K YL S + L+ V K + + S SL++N + +++
Sbjct: 148 EYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSY---ILSS 204
Query: 838 GMDDSTILIYNARSSEV-ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVW 889
G I ++ R +E ++ L GHS+ V GL ++ L S G D + VW
Sbjct: 205 GSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW 257
Score = 33.1 bits (74), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 824 SLAFNPHDNNVIAIG--MDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSG 881
++A+ P +NV+A G D I I+N S +S ++ HS+ V +++S L+S
Sbjct: 281 AVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ-VCSILWSPHYKELISGH 339
Query: 882 GDA--QIFVW 889
G A Q+ +W
Sbjct: 340 GFAQNQLVIW 349
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 5/113 (4%)
Query: 779 EAVPCFALSKNDAYL-FSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAI 837
E + A K YL S + L+ V K + + S SL++N + +++
Sbjct: 159 EYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSY---ILSS 215
Query: 838 GMDDSTILIYNARSSEV-ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVW 889
G I ++ R +E ++ L GHS+ V GL ++ L S G D + VW
Sbjct: 216 GSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW 268
Score = 33.1 bits (74), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 824 SLAFNPHDNNVIAIG--MDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSG 881
++A+ P +NV+A G D I I+N S +S ++ HS+ V +++S L+S
Sbjct: 292 AVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ-VCSILWSPHYKELISGH 350
Query: 882 GDA--QIFVW 889
G A Q+ +W
Sbjct: 351 GFAQNQLVIW 360
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 59/252 (23%), Positives = 89/252 (35%), Gaps = 70/252 (27%)
Query: 440 DKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV 499
DKT+++WD TG F GH + V S+ K + I S S D IK W
Sbjct: 86 DKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASX--IISGSRDKTIKVW--------- 134
Query: 500 DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHN---- 555
IK L HN
Sbjct: 135 ------------------------------------------TIKGQCLATLLGHNDWVS 152
Query: 556 SVSVVHFDTAKDQ---ILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTL 612
V VV + A D I++AG+D +K W++N+ Q+ D G + + +GTL
Sbjct: 153 QVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQI--EADFIGHNSNINTLTASPDGTL 210
Query: 613 LAVIANENRIKILETPESNSVDAAGVLS--DNLRKLSVNPISTVTGAGIANGSVSVNEDP 670
+A + I + A LS D + L+ +P A A G + DP
Sbjct: 211 IASAGKDGEIXLWNLAAKK---AXYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDP 267
Query: 671 K---EDVKPEIS 679
+ +D++PE +
Sbjct: 268 QYLVDDLRPEFA 279
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 54/126 (42%), Gaps = 10/126 (7%)
Query: 417 VGNVNDLAFSAPCKQISVITCGD-DKTIKVWDAVTGSRTYSFEGHGAPV--YSLCPHAKE 473
VG+ +D+ K+ S I G DKTIKVW + G + GH V + P+ K
Sbjct: 104 VGHKSDVXSVDIDKKASXIISGSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKA 162
Query: 474 NIHFIFSISV--DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGES 531
+ + IS D +KAW + D+ + S +G + S G K+GE
Sbjct: 163 DDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAG--KDGEI 220
Query: 532 FLVEWN 537
L WN
Sbjct: 221 XL--WN 224
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 831 DNNVIAIGMDDSTILIYNA-RSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVW 889
+ +++A G D+ I IY+ R ++I L H V L++ + + LVSSG DA I W
Sbjct: 552 EEDLVATGSLDTNIFIYSVKRPXKIIKALNAHKDGVNNLLW-ETPSTLVSSGADACIKRW 610
Query: 890 DV 891
+V
Sbjct: 611 NV 612
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 7/72 (9%)
Query: 825 LAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSS---- 880
+ F+P + D I ++ +S E + +E + V G +F AL+ L S
Sbjct: 212 VEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIF--ALSWLDSQKFAT 269
Query: 881 -GGDAQIFVWDV 891
G DA I VWDV
Sbjct: 270 VGADATIRVWDV 281
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 35.0 bits (79), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
Query: 405 SDARQQLEID-AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP 463
S+ Q EID AHV + L F P + ++I+ D +K+W GS + GH A
Sbjct: 123 SNFNLQREIDQAHVSEITKLKF-FPSGE-ALISSSQDMQLKIWSVKDGSNPRTLIGHRAT 180
Query: 464 VYSLCPHAKENIHFIFSISVDGKIKAW 490
V + + + S S+DG I+ W
Sbjct: 181 VTDIAIIDRG--RNVLSASLDGTIRLW 205
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 831 DNNVIAIGMDDSTILIYNA-RSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVW 889
+ +++A G D+ I IY+ R ++I L H V L++ + + LVSSG DA I W
Sbjct: 552 EEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLW-ETPSTLVSSGADACIKRW 610
Query: 890 DV 891
+V
Sbjct: 611 NV 612
Score = 30.4 bits (67), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 7/72 (9%)
Query: 825 LAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSS---- 880
+ F+P + D I ++ +S E + +E + V G +F AL+ L S
Sbjct: 212 VEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIF--ALSWLDSQKFAT 269
Query: 881 -GGDAQIFVWDV 891
G DA I VWDV
Sbjct: 270 VGADATIRVWDV 281
Score = 30.0 bits (66), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 831 DNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVW 889
+ +I++ +D T+ Y EV+ + GH+K +T L +N L+S D +I W
Sbjct: 309 NGRIISLSLD-GTLNFYELGHDEVLKTISGHNKGITAL----TVNPLISGSYDGRIMEW 362
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
Query: 405 SDARQQLEID-AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP 463
S+ Q EID AHV + L F P + ++I+ D +K+W GS + GH A
Sbjct: 126 SNFNLQREIDQAHVSEITKLKF-FPSGE-ALISSSQDMQLKIWSVKDGSNPRTLIGHRAT 183
Query: 464 VYSLCPHAKENIHFIFSISVDGKIKAW 490
V + + + S S+DG I+ W
Sbjct: 184 VTDIAIIDRG--RNVLSASLDGTIRLW 208
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 34.7 bits (78), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 5/113 (4%)
Query: 779 EAVPCFALSKNDAYL-FSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAI 837
E + A K YL S + L+ V K + + S SL++N + +++
Sbjct: 68 EYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSY---ILSS 124
Query: 838 GMDDSTILIYNARSSEV-ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVW 889
G I ++ R +E ++ L GHS+ V GL ++ L S G D + VW
Sbjct: 125 GSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW 177
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 824 SLAFNPHDNNVIAIG--MDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSG 881
++A+ P +NV+A G D I I+N S +S ++ HS+ V +++S L+S
Sbjct: 201 AVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ-VCSILWSPHYKELISGH 259
Query: 882 GDA--QIFVW 889
G A Q+ +W
Sbjct: 260 GFAQNQLVIW 269
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 33.9 bits (76), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 13/57 (22%), Positives = 29/57 (50%)
Query: 536 WNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI 592
WN + + G++ + V +D ++I++ G DH +K+W +N +++ I
Sbjct: 179 WNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAI 235
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/101 (19%), Positives = 45/101 (44%), Gaps = 3/101 (2%)
Query: 795 SASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV 854
+ S G+I + +T + I + L F+P D N++ D + ++N ++ +
Sbjct: 127 AGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTL 186
Query: 855 IS---KLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVD 892
++ +EGH V + ++S G D + +W ++
Sbjct: 187 VAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRIN 227
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 33.5 bits (75), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 13/57 (22%), Positives = 29/57 (50%)
Query: 536 WNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI 592
WN + + G++ + V +D ++I++ G DH +K+W +N +++ I
Sbjct: 142 WNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAI 198
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/101 (19%), Positives = 45/101 (44%), Gaps = 3/101 (2%)
Query: 795 SASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV 854
+ S G+I + +T + I + L F+P D N++ D + ++N ++ +
Sbjct: 90 AGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTL 149
Query: 855 IS---KLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVD 892
++ +EGH V + ++S G D + +W ++
Sbjct: 150 VAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRIN 190
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 33.5 bits (75), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 13/57 (22%), Positives = 29/57 (50%)
Query: 536 WNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI 592
WN + + G++ + V +D ++I++ G DH +K+W +N +++ I
Sbjct: 143 WNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAI 199
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/101 (19%), Positives = 45/101 (44%), Gaps = 3/101 (2%)
Query: 795 SASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV 854
+ S G+I + +T + I + L F+P D N++ D + ++N ++ +
Sbjct: 91 AGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTL 150
Query: 855 IS---KLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVD 892
++ +EGH V + ++S G D + +W ++
Sbjct: 151 VAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRIN 191
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 33.5 bits (75), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 13/57 (22%), Positives = 29/57 (50%)
Query: 536 WNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI 592
WN + + G++ + V +D ++I++ G DH +K+W +N +++ I
Sbjct: 142 WNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAI 198
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/101 (19%), Positives = 45/101 (44%), Gaps = 3/101 (2%)
Query: 795 SASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV 854
+ S G+I + +T + I + L F+P D N++ D + ++N ++ +
Sbjct: 90 AGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTL 149
Query: 855 IS---KLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVD 892
++ +EGH V + ++S G D + +W ++
Sbjct: 150 VAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRIN 190
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 33.5 bits (75), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 13/57 (22%), Positives = 29/57 (50%)
Query: 536 WNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI 592
WN + + G++ + V +D ++I++ G DH +K+W +N +++ I
Sbjct: 138 WNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAI 194
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/101 (19%), Positives = 45/101 (44%), Gaps = 3/101 (2%)
Query: 795 SASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV 854
+ S G+I + +T + I + L F+P D N++ D + ++N ++ +
Sbjct: 86 AGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTL 145
Query: 855 IS---KLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVD 892
++ +EGH V + ++S G D + +W ++
Sbjct: 146 VAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRIN 186
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 33.1 bits (74), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
Query: 415 AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKEN 474
H G ++ L F+ K + ++ DD T+++W G+ F GH + S +
Sbjct: 245 GHHGPISVLEFNDTNKLL--LSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDDK 302
Query: 475 IHFIFSISVDGKIKAW 490
+ S S+DG ++ W
Sbjct: 303 ---VISCSMDGSVRLW 315
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/150 (20%), Positives = 57/150 (38%), Gaps = 9/150 (6%)
Query: 844 ILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQ 903
I +Y KL GH ++ L F+D +L+S+ D + +W Q C
Sbjct: 229 IFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNC---- 284
Query: 904 TPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFS 963
+ S + D + + ++ ++ T L + VPI S
Sbjct: 285 ----FYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQNTLLALSI-VDGVPIFAGRIS 339
Query: 964 CDCRMVFTSFVDGTLSIHEASNLEVQCRIL 993
D + +F+DG +++++ L + R L
Sbjct: 340 QDGQKYAVAFMDGQVNVYDLKKLNSKSRSL 369
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 33.1 bits (74), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 7/83 (8%)
Query: 413 IDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-----EGHGAPVYSL 467
+ H G + + P ++ +IT D+T +WD TG R F GH A V SL
Sbjct: 153 LTGHKGYASSCQY-VPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSL 211
Query: 468 CPHAKENIHFIFSISVDGKIKAW 490
++ N + S S D ++ W
Sbjct: 212 SINSL-NANMFISGSCDTTVRLW 233
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 33.1 bits (74), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 48/106 (45%), Gaps = 17/106 (16%)
Query: 802 SLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDST---ILIYNARSSEVISKL 858
+L + F++ +++ S + S+ F+P +++AI D ++ I +Y E I L
Sbjct: 226 TLRPLYNFESQHSMINNSNSIRSVKFSPQ-GSLLAIAHDSNSFGCITLYETEFGERIGSL 284
Query: 859 E-------------GHSKRVTGLVFSDALNILVSSGGDAQIFVWDV 891
HS V L F+D+ L S+G D ++ WDV
Sbjct: 285 SVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDV 330
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 33.1 bits (74), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 48/106 (45%), Gaps = 17/106 (16%)
Query: 802 SLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDST---ILIYNARSSEVISKL 858
+L + F++ +++ S + S+ F+P +++AI D ++ I +Y E I L
Sbjct: 216 TLRPLYNFESQHSMINNSNSIRSVKFSPQ-GSLLAIAHDSNSFGCITLYETEFGERIGSL 274
Query: 859 E-------------GHSKRVTGLVFSDALNILVSSGGDAQIFVWDV 891
HS V L F+D+ L S+G D ++ WDV
Sbjct: 275 SVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDV 320
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Query: 268 VSLKNIPDYSPKSSLKKEMFQSFGETSFSDFPKTVAQTLIEGSSSPM-----SMDFHPVQ 322
V +I Y KSSL + + + F +++ + ++SP S+++HP
Sbjct: 25 VGQTSILHYIYKSSLGQSIHAQLRQCLQEPFIRSLKSYKLHRTASPFDRRVTSLEWHPTH 84
Query: 323 HTLLLVGTNVGDTGLWDVNSGQK 345
T + VG+ GD LWD + K
Sbjct: 85 PTTVAVGSKGGDIILWDYDVQNK 107
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Query: 268 VSLKNIPDYSPKSSLKKEMFQSFGETSFSDFPKTVAQTLIEGSSSPM-----SMDFHPVQ 322
V +I Y KSSL + + + F +++ + ++SP S+++HP
Sbjct: 26 VGQTSILHYIYKSSLGQSIHAQLRQCLQEPFIRSLKSYKLHRTASPFDRRVTSLEWHPTH 85
Query: 323 HTLLLVGTNVGDTGLWDVNSGQK 345
T + VG+ GD LWD + K
Sbjct: 86 PTTVAVGSKGGDIILWDYDVQNK 108
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 67/173 (38%), Gaps = 22/173 (12%)
Query: 472 KENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMA-YSANGRRLFS-------- 522
K+ FI I G I ++ L Y + G TR+ + N R+F+
Sbjct: 152 KDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIW 211
Query: 523 -CGTSKEGESFLVEWNESEGAI------KRTYQGLQLQHNSVSVVHFDTAKDQILA-AGD 574
C S +V ++ G + + L++ V+ V + D LA A
Sbjct: 212 FCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASV 271
Query: 575 DHVIKIWDMNKVQLLTTIDAGGGLPENPRI---CFNKNGTLLAVIANENRIKI 624
D +KIWD+ +V+ + LP + CF+ +G L ++ I++
Sbjct: 272 DQTVKIWDLRQVRGKASFLY--SLPHRHPVNAACFSPDGARLLTTDQKSEIRV 322
Score = 30.4 bits (67), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 803 LYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYN--ARSSEVISKLEG 860
L+ + +++ + P ATSLA++P + +A+G I+++N + K G
Sbjct: 103 LHTLDSYRILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIG 162
Query: 861 HSKRVTGLVFS 871
+TGL F+
Sbjct: 163 AGGSITGLKFN 173
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 67/173 (38%), Gaps = 22/173 (12%)
Query: 472 KENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMA-YSANGRRLFS-------- 522
K+ FI I G I ++ L Y + G TR+ + N R+F+
Sbjct: 152 KDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIW 211
Query: 523 -CGTSKEGESFLVEWNESEGAI------KRTYQGLQLQHNSVSVVHFDTAKDQILA-AGD 574
C S +V ++ G + + L++ V+ V + D LA A
Sbjct: 212 FCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASV 271
Query: 575 DHVIKIWDMNKVQLLTTIDAGGGLPENPRI---CFNKNGTLLAVIANENRIKI 624
D +KIWD+ +V+ + LP + CF+ +G L ++ I++
Sbjct: 272 DQTVKIWDLRQVRGKASFLY--SLPHRHPVNAACFSPDGARLLTTDQKSEIRV 322
Score = 30.4 bits (67), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 803 LYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYN--ARSSEVISKLEG 860
L+ + +++ + P ATSLA++P + +A+G I+++N + K G
Sbjct: 103 LHTLDSYRILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIG 162
Query: 861 HSKRVTGLVFS 871
+TGL F+
Sbjct: 163 AGGSITGLKFN 173
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 67/173 (38%), Gaps = 22/173 (12%)
Query: 472 KENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMA-YSANGRRLFS-------- 522
K+ FI I G I ++ L Y + G TR+ + N R+F+
Sbjct: 153 KDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIW 212
Query: 523 -CGTSKEGESFLVEWNESEGAI------KRTYQGLQLQHNSVSVVHFDTAKDQILA-AGD 574
C S +V ++ G + + L++ V+ V + D LA A
Sbjct: 213 FCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASV 272
Query: 575 DHVIKIWDMNKVQLLTTIDAGGGLPENPRI---CFNKNGTLLAVIANENRIKI 624
D +KIWD+ +V+ + LP + CF+ +G L ++ I++
Sbjct: 273 DQTVKIWDLRQVRGKASFLY--SLPHRHPVNAACFSPDGARLLTTDQKSEIRV 323
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 803 LYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYN--ARSSEVISKLEG 860
L+ + +++ + P ATSLA++P + +A+G I+++N + K G
Sbjct: 104 LHTLDSYRILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIG 163
Query: 861 HSKRVTGLVFS 871
+TGL F+
Sbjct: 164 AGGSITGLKFN 174
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 831 DNNVIAIGMDDSTILIYNARSSEVIS--KLEGHSKRVTGLVFSDALNILVSSGGDAQIFV 888
D IAI ++ + IY ++ + +L+ H+ +VTG+ ++ N +V+ G D +V
Sbjct: 19 DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDWAPDSNRIVTCGTDRNAYV 78
Query: 889 WDVDG 893
W + G
Sbjct: 79 WTLKG 83
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 380 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD 439
W+ D + + + + H V +Y G+ Q E+ H G V + ++ +I +TCG
Sbjct: 16 WNKDRTQIAICPNNHEVHIYE-KSGNKWVQVHELKEHNGQVTGIDWAPDSNRI--VTCGT 72
Query: 440 DKTIKVW 446
D+ VW
Sbjct: 73 DRNAYVW 79
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 831 DNNVIAIGMDDSTILIYNARSSEVIS--KLEGHSKRVTGLVFSDALNILVSSGGDAQIFV 888
D IAI ++ + IY ++ + +L+ H+ +VTG+ ++ N +V+ G D +V
Sbjct: 19 DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYV 78
Query: 889 WDVDG 893
W + G
Sbjct: 79 WTLKG 83
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 380 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD 439
W+ D + + + + H V +Y G+ Q E+ H G V + ++ +I +TCG
Sbjct: 16 WNKDRTQIAICPNNHEVHIYE-KSGNKWVQVHELKEHNGQVTGVDWAPDSNRI--VTCGT 72
Query: 440 DKTIKVW 446
D+ VW
Sbjct: 73 DRNAYVW 79
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 788 KNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIY 847
K+D + G +SL + + T S T LA++ H + +A +D T+ +
Sbjct: 238 KDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVL 297
Query: 848 NARSSEVISKLEGHSKRVTGLVFS 871
+A SEV L H VTG+ +S
Sbjct: 298 DADFSEVFRDLS-HRDFVTGVAWS 320
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 7/78 (8%)
Query: 520 LFSCGTS--KEGESFLVE-WNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQI-LAAGDD 575
+FS GT G+ F V+ W+ S+ A+ ++Y + N V+ KD I L+ G+D
Sbjct: 147 VFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAAC---PGKDTIFLSCGED 203
Query: 576 HVIKIWDMNKVQLLTTID 593
I +WD K + T ID
Sbjct: 204 GRILLWDTRKPKPATRID 221
Score = 30.0 bits (66), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 7/94 (7%)
Query: 435 ITCGDDKTIKVWDAVTGSRTYSFEGHGAPV--YSLCPHAKENIHFIFSISVDGKIKAW-- 490
++ G D ++KVWD + S+ H + V + CP K+ I S DG+I W
Sbjct: 155 VSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACP-GKDTI--FLSCGEDGRILLWDT 211
Query: 491 LYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCG 524
R+D+ A T + + F+CG
Sbjct: 212 RKPKPATRIDFCASDTIPTSVTWHPEKDDTFACG 245
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 45/105 (42%), Gaps = 20/105 (19%)
Query: 374 SVNRVVWSPD--GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPC-- 429
SVN V W+P G LL VA S V + + + IDAH VN ++ AP
Sbjct: 101 SVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII-IDAHAIGVNSASW-APATI 158
Query: 430 ----------KQISVITCGDDKTIKVWDAVTGSRTY----SFEGH 460
+ +T G D +K+W + ++TY + EGH
Sbjct: 159 EEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH 203
Score = 30.4 bits (67), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Query: 414 DAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW--DAVTGSRTYSFEGHGAPVYSL-CPH 470
+AH ++D K+++ TC DKTIK++ + T + GH PV+ + H
Sbjct: 6 NAHNELIHDAVLDYYGKRLA--TCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH 63
Query: 471 AKENIHFIFSISVDGKIKAW 490
K + S S DGK+ W
Sbjct: 64 PKFGT-ILASCSYDGKVLIW 82
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Query: 416 HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENI 475
H G V D+ +S ++ +C DKT K+WD ++ ++ H APV ++ N
Sbjct: 85 HTGPVLDVCWSDDGSKVFTASC--DKTAKMWD-LSSNQAIQIAQHDAPVKTIHWIKAPNY 141
Query: 476 HFIFSISVDGKIKAW 490
+ + S D +K W
Sbjct: 142 SCVMTGSWDKTLKFW 156
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 63/294 (21%), Positives = 112/294 (38%), Gaps = 40/294 (13%)
Query: 394 HIVQLYAYHGGSDARQQLEI---------DAHVGNVNDLAFSAPCKQISVITC------- 437
H+ ++YA H G+D+R L D++ N + P + V+TC
Sbjct: 54 HLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNK---VHAIPLRSSWVMTCAYAPSGN 110
Query: 438 -----GDDKTIKVWDAVT--GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAW 490
G D +++ T G+ S E G Y C ++ + S G
Sbjct: 111 YVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTS---SGDTTCA 167
Query: 491 LYDSLGARVDYDAPGLGCTRMAYS-ANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG 549
L+D + G M+ S A RLF G W+ EG ++T+ G
Sbjct: 168 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKL---WDVREGMCRQTFTG 224
Query: 550 LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN 609
+ ++ + F + DD +++D+ Q L T + + F+K+
Sbjct: 225 ---HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKS 281
Query: 610 GTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGS 663
G LL ++ + + ++ D AGVL+ + ++S + T G +A GS
Sbjct: 282 GRLLLAGYDDFNCNVWDALKA---DRAGVLAGHDNRVSCLGV-TDDGMAVATGS 331
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 31.2 bits (69), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 63/294 (21%), Positives = 112/294 (38%), Gaps = 40/294 (13%)
Query: 394 HIVQLYAYHGGSDARQQLEI---------DAHVGNVNDLAFSAPCKQISVITC------- 437
H+ ++YA H G+D+R L D++ N + P + V+TC
Sbjct: 54 HLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNK---VHAIPLRSSWVMTCAYAPSGN 110
Query: 438 -----GDDKTIKVWDAVT--GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAW 490
G D +++ T G+ S E G Y C ++ + S G
Sbjct: 111 YVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTS---SGDTTCA 167
Query: 491 LYDSLGARVDYDAPGLGCTRMAYS-ANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG 549
L+D + G M+ S A RLF G W+ EG ++T+ G
Sbjct: 168 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKL---WDVREGMCRQTFTG 224
Query: 550 LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN 609
+ ++ + F + DD +++D+ Q L T + + F+K+
Sbjct: 225 ---HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKS 281
Query: 610 GTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGS 663
G LL ++ + + ++ D AGVL+ + ++S + T G +A GS
Sbjct: 282 GRLLLAGYDDFNCNVWDALKA---DRAGVLAGHDNRVSCLGV-TDDGMAVATGS 331
>pdb|3LOQ|A Chain A, The Crystal Structure Of A Universal Stress Protein From
Archaeoglobus Fulgidus Dsm 4304
pdb|3LOQ|B Chain B, The Crystal Structure Of A Universal Stress Protein From
Archaeoglobus Fulgidus Dsm 4304
Length = 294
Score = 31.2 bits (69), Expect = 3.5, Method: Composition-based stats.
Identities = 32/96 (33%), Positives = 45/96 (46%), Gaps = 12/96 (12%)
Query: 606 FNKNGTLLAVIANENRIKILETP---ESNSVDAAGVL-SDNLRKLSVNPISTVTGAGIAN 661
F N LL +EN K+LE + V+ GVL NL KL STV+G +
Sbjct: 20 FQSNAXLLPTDLSENSFKVLEYLGDFKKVGVEEIGVLFVINLTKL-----STVSGGIDID 74
Query: 662 GSVSVNEDPKEDVKPEISVEAEN---KSEVEKPLFA 694
+ + E+V PE++ + E K+EV KP A
Sbjct: 75 HYIDEXSEKAEEVLPEVAQKIEAAGIKAEVIKPFPA 110
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 428 PCKQISVITCGDDKTIKVWDAVTGSRTYS-FEGHGAPVYSLCPHAKENIHFIFSISVDGK 486
P +Q V T G D + +WD G+ S + H A ++ + H H +F+ S DG
Sbjct: 246 PNQQHVVATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEVHFHPSNPEH-LFTCSEDGS 304
Query: 487 IKAW 490
+ W
Sbjct: 305 LWHW 308
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 46/105 (43%), Gaps = 20/105 (19%)
Query: 374 SVNRVVWSPD--GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPC-- 429
SVN V W+P G LL VA S V + + + + IDAH VN ++ AP
Sbjct: 103 SVNSVQWAPHEYGPLLLVASSDGKVSVVEFKE-NGTTSPIIIDAHAIGVNSASW-APATI 160
Query: 430 ----------KQISVITCGDDKTIKVWDAVTGSRTY----SFEGH 460
+ +T G D +K+W + ++TY + EGH
Sbjct: 161 EEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH 205
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 30.0 bits (66), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 61/291 (20%), Positives = 111/291 (38%), Gaps = 34/291 (11%)
Query: 394 HIVQLYAYHGGSDAR------QQLEIDAHVGNVNDLAFSAPCKQISVITC---------- 437
H+ ++YA H G+D+R Q ++ + + P + V+TC
Sbjct: 54 HLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVA 113
Query: 438 --GDDKTIKVWDAVT--GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 493
G D +++ T G+ S E G Y C ++ + S G L+D
Sbjct: 114 CGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTS---SGDTTCALWD 170
Query: 494 SLGARVDYDAPGLGCTRMAYS-ANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL 552
+ G M+ S A RLF G W+ EG ++T+ G
Sbjct: 171 IETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKL---WDVREGMCRQTFTG--- 224
Query: 553 QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTL 612
+ ++ + F + DD +++D+ Q L T + + F+K+G L
Sbjct: 225 HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRL 284
Query: 613 LAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGS 663
L ++ + + ++ D AGVL+ + ++S + T G +A GS
Sbjct: 285 LLAGYDDFNCNVWDALKA---DRAGVLAGHDNRVSCLGV-TDDGMAVATGS 331
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 30.0 bits (66), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 61/291 (20%), Positives = 111/291 (38%), Gaps = 34/291 (11%)
Query: 394 HIVQLYAYHGGSDAR------QQLEIDAHVGNVNDLAFSAPCKQISVITC---------- 437
H+ ++YA H G+D+R Q ++ + + P + V+TC
Sbjct: 54 HLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVA 113
Query: 438 --GDDKTIKVWDAVT--GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 493
G D +++ T G+ S E G Y C ++ + S G L+D
Sbjct: 114 CGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTS---SGDTTCALWD 170
Query: 494 SLGARVDYDAPGLGCTRMAYS-ANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL 552
+ G M+ S A RLF G W+ EG ++T+ G
Sbjct: 171 IETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKL---WDVREGMCRQTFTG--- 224
Query: 553 QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTL 612
+ ++ + F + DD +++D+ Q L T + + F+K+G L
Sbjct: 225 HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRL 284
Query: 613 LAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGS 663
L ++ + + ++ D AGVL+ + ++S + T G +A GS
Sbjct: 285 LLAGYDDFNCNVWDALKA---DRAGVLAGHDNRVSCLGV-TDDGMAVATGS 331
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 30.0 bits (66), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 46/105 (43%), Gaps = 20/105 (19%)
Query: 374 SVNRVVWSPD--GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPC-- 429
SVN V W+P G LL VA S V + + + + IDAH VN ++ AP
Sbjct: 101 SVNSVQWAPHEYGPLLLVASSDGKVSVVEFKE-NGTTSPIIIDAHAIGVNSASW-APATI 158
Query: 430 ----------KQISVITCGDDKTIKVWDAVTGSRTY----SFEGH 460
+ +T G D +K+W + ++TY + EGH
Sbjct: 159 EEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH 203
>pdb|2HR7|A Chain A, Insulin Receptor (Domains 1-3)
pdb|2HR7|B Chain B, Insulin Receptor (Domains 1-3)
Length = 486
Score = 30.0 bits (66), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 46/102 (45%), Gaps = 3/102 (2%)
Query: 647 SVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPS 706
SV + G + NGS+ +N ++ E+ E+ L R S +L+ S
Sbjct: 323 SVTSAQELRGCTVINGSLIINIRGGNNLAAELEANLGLIEEISGYLKIRRS--YALVSLS 380
Query: 707 KVKANKISR-LTYNNGGQAIFALASNGVHLMWRWPRNDLTLS 747
+ ++ R T G + +AL + + +W W +++LT++
Sbjct: 381 FFRKLRLIRGETLEIGNYSFYALDNQNLRQLWDWSKHNLTIT 422
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 29.6 bits (65), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 62/294 (21%), Positives = 113/294 (38%), Gaps = 40/294 (13%)
Query: 394 HIVQLYAYHGGSDAR---------QQLEIDAHVGNVNDLAFSAPCKQISVITC------- 437
H+ ++YA H G+D+R + + D++ N + P + V+TC
Sbjct: 65 HLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNK---VHAIPLRSSWVMTCAYAPSGN 121
Query: 438 -----GDDKTIKVWDAVT--GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAW 490
G D +++ T G+ S E G Y C ++ + S G
Sbjct: 122 YVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTS---SGDTTCA 178
Query: 491 LYDSLGARVDYDAPGLGCTRMAYS-ANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG 549
L+D + G M+ S A RLF G W+ EG ++T+ G
Sbjct: 179 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKL---WDVREGMCRQTFTG 235
Query: 550 LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN 609
+ ++ + F + DD +++D+ Q L T + + F+K+
Sbjct: 236 ---HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKS 292
Query: 610 GTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGS 663
G LL ++ + + ++ D AGVL+ + ++S + T G +A GS
Sbjct: 293 GRLLLAGYDDFNCNVWDALKA---DRAGVLAGHDNRVSCLGV-TDDGMAVATGS 342
>pdb|3W14|E Chain E, Insulin Receptor Ectodomain Construct Comprising Domains
L1,cr,l2, Fniii-1 And Alphact Peptide In Complex With
Bovine Insulin And Fab 83-14
pdb|3W14|F Chain F, Insulin Receptor Ectodomain Construct Comprising Domains
L1,cr,l2, Fniii-1 And Alphact Peptide In Complex With
Bovine Insulin And Fab 83-14
Length = 609
Score = 29.6 bits (65), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 46/102 (45%), Gaps = 3/102 (2%)
Query: 647 SVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPS 706
SV + G + NGS+ +N ++ E+ E+ L R S +L+ S
Sbjct: 323 SVTSAQELRGCTVINGSLIINIRGGNNLAAELEANLGLIEEISGYLKIRRS--YALVSLS 380
Query: 707 KVKANKISR-LTYNNGGQAIFALASNGVHLMWRWPRNDLTLS 747
+ ++ R T G + +AL + + +W W +++LT++
Sbjct: 381 FFRKLRLIRGETLEIGNYSFYALDNQNLRQLWDWSKHNLTIT 422
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,549,600
Number of Sequences: 62578
Number of extensions: 1373683
Number of successful extensions: 3895
Number of sequences better than 100.0: 116
Number of HSP's better than 100.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 51
Number of HSP's that attempted gapping in prelim test: 2989
Number of HSP's gapped (non-prelim): 654
length of query: 1068
length of database: 14,973,337
effective HSP length: 109
effective length of query: 959
effective length of database: 8,152,335
effective search space: 7818089265
effective search space used: 7818089265
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)